Query 024413
Match_columns 268
No_of_seqs 267 out of 3204
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 04:25:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024413.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024413hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1116 TauB ABC-type nitrate/ 100.0 1.9E-28 4.2E-33 210.5 13.2 148 60-209 20-193 (248)
2 COG1136 SalX ABC-type antimicr 99.9 6.8E-27 1.5E-31 200.2 13.8 145 61-207 23-203 (226)
3 COG1121 ZnuC ABC-type Mn/Zn tr 99.9 5.8E-27 1.3E-31 203.4 13.3 148 59-208 20-200 (254)
4 KOG1532 GTPase XAB1, interacts 99.9 1.3E-26 2.9E-31 199.9 15.0 188 66-253 16-203 (366)
5 COG1126 GlnQ ABC-type polar am 99.9 1.6E-26 3.5E-31 194.2 13.8 144 61-207 20-196 (240)
6 COG1125 OpuBA ABC-type proline 99.9 8.3E-27 1.8E-31 200.0 10.4 154 59-212 17-201 (309)
7 COG1120 FepC ABC-type cobalami 99.9 1.4E-25 3E-30 195.7 13.8 148 61-210 20-202 (258)
8 COG3842 PotA ABC-type spermidi 99.9 3.1E-25 6.8E-30 201.3 11.0 152 60-213 22-203 (352)
9 COG3839 MalK ABC-type sugar tr 99.9 1.1E-24 2.3E-29 196.8 12.8 129 61-191 21-178 (338)
10 COG1135 AbcC ABC-type metal io 99.9 2.5E-24 5.4E-29 189.4 12.7 121 59-181 22-176 (339)
11 COG1127 Ttg2A ABC-type transpo 99.9 3.3E-24 7.1E-29 182.8 12.9 152 59-213 24-212 (263)
12 COG1118 CysA ABC-type sulfate/ 99.9 4.1E-24 8.9E-29 187.8 13.1 145 61-207 20-198 (345)
13 COG2884 FtsE Predicted ATPase 99.9 1.2E-23 2.5E-28 173.6 14.1 145 60-207 19-197 (223)
14 PF03029 ATP_bind_1: Conserved 99.9 2E-24 4.4E-29 188.2 9.3 172 74-247 1-172 (238)
15 COG1131 CcmA ABC-type multidru 99.9 1.8E-23 3.9E-28 187.7 15.1 132 59-192 21-182 (293)
16 COG3840 ThiQ ABC-type thiamine 99.9 1.2E-23 2.6E-28 172.5 11.7 138 66-205 22-188 (231)
17 COG3638 ABC-type phosphate/pho 99.9 1.1E-23 2.4E-28 179.1 10.4 147 60-208 21-209 (258)
18 COG4525 TauB ABC-type taurine 99.9 2.1E-23 4.6E-28 172.9 10.4 145 63-209 25-195 (259)
19 COG1124 DppF ABC-type dipeptid 99.9 3.9E-23 8.5E-28 176.6 12.1 147 60-207 24-202 (252)
20 TIGR00960 3a0501s02 Type II (G 99.9 6.4E-23 1.4E-27 176.0 13.5 144 62-207 22-198 (216)
21 COG0411 LivG ABC-type branched 99.9 2.1E-23 4.6E-28 178.3 9.9 148 59-208 20-211 (250)
22 COG4175 ProV ABC-type proline/ 99.9 7.9E-24 1.7E-28 186.5 7.4 152 61-214 46-232 (386)
23 cd03226 ABC_cobalt_CbiO_domain 99.9 9.1E-23 2E-27 173.8 13.7 144 61-207 18-186 (205)
24 COG4181 Predicted ABC-type tra 99.9 1.2E-22 2.6E-27 165.2 13.1 145 62-208 29-208 (228)
25 COG4604 CeuD ABC-type enteroch 99.9 6.5E-23 1.4E-27 170.2 11.1 147 61-209 19-198 (252)
26 COG4555 NatA ABC-type Na+ tran 99.9 4.8E-23 1.1E-27 171.4 10.4 140 61-203 20-188 (245)
27 TIGR01188 drrA daunorubicin re 99.9 1.6E-22 3.5E-27 182.3 12.8 115 62-178 12-155 (302)
28 TIGR01166 cbiO cobalt transpor 99.9 3.8E-22 8.2E-27 168.0 14.1 144 62-207 11-187 (190)
29 cd03259 ABC_Carb_Solutes_like 99.9 2.9E-22 6.3E-27 171.6 13.5 145 61-207 18-191 (213)
30 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.9 3E-22 6.6E-27 172.0 13.4 145 61-207 22-201 (218)
31 PRK11650 ugpC glycerol-3-phosp 99.9 2.4E-22 5.3E-27 184.9 13.6 115 62-178 23-165 (356)
32 TIGR02314 ABC_MetN D-methionin 99.9 3E-22 6.5E-27 183.2 14.0 119 61-181 23-175 (343)
33 cd03293 ABC_NrtD_SsuB_transpor 99.9 3.4E-22 7.3E-27 172.1 13.3 144 62-207 23-192 (220)
34 TIGR02673 FtsE cell division A 99.9 4.3E-22 9.3E-27 170.6 13.7 145 61-207 20-197 (214)
35 cd03261 ABC_Org_Solvent_Resist 99.9 5.3E-22 1.2E-26 172.5 14.4 144 62-207 19-197 (235)
36 PRK13538 cytochrome c biogenes 99.9 4.3E-22 9.3E-27 169.7 13.3 145 61-207 19-189 (204)
37 COG1137 YhbG ABC-type (unclass 99.9 3.1E-23 6.8E-28 172.3 6.1 149 59-210 20-202 (243)
38 cd03225 ABC_cobalt_CbiO_domain 99.9 4.2E-22 9E-27 170.3 13.3 144 61-207 19-194 (211)
39 PRK13537 nodulation ABC transp 99.9 3.6E-22 7.9E-27 180.4 13.3 116 61-178 25-169 (306)
40 TIGR02211 LolD_lipo_ex lipopro 99.9 5.1E-22 1.1E-26 170.9 13.6 144 62-207 24-202 (221)
41 cd03265 ABC_DrrA DrrA is the A 99.9 4.8E-22 1E-26 171.1 13.3 145 61-207 18-192 (220)
42 PRK11629 lolD lipoprotein tran 99.9 6.6E-22 1.4E-26 171.8 14.1 144 62-207 28-206 (233)
43 TIGR03265 PhnT2 putative 2-ami 99.9 4.7E-22 1E-26 182.8 13.8 115 62-178 23-165 (353)
44 cd03268 ABC_BcrA_bacitracin_re 99.9 5.1E-22 1.1E-26 169.5 12.7 145 61-207 18-186 (208)
45 COG1122 CbiO ABC-type cobalt t 99.9 2.3E-22 5E-27 174.5 10.7 145 62-208 23-200 (235)
46 cd03269 ABC_putative_ATPase Th 99.9 5.9E-22 1.3E-26 169.3 13.1 144 62-207 19-188 (210)
47 cd03262 ABC_HisP_GlnQ_permease 99.9 6.9E-22 1.5E-26 169.1 13.4 145 61-207 18-195 (213)
48 TIGR03608 L_ocin_972_ABC putat 99.9 7.2E-22 1.6E-26 168.1 13.4 144 62-207 17-194 (206)
49 cd03219 ABC_Mj1267_LivG_branch 99.9 8.5E-22 1.8E-26 171.2 14.1 145 61-207 18-203 (236)
50 TIGR01184 ntrCD nitrate transp 99.9 7E-22 1.5E-26 171.5 13.4 142 64-207 6-175 (230)
51 TIGR01189 ccmA heme ABC export 99.9 1.2E-21 2.5E-26 166.2 14.4 145 61-207 18-187 (198)
52 PRK09536 btuD corrinoid ABC tr 99.9 7.2E-22 1.6E-26 184.0 14.2 145 61-207 21-199 (402)
53 PRK11432 fbpC ferric transport 99.9 6.5E-22 1.4E-26 181.7 13.7 115 62-178 25-167 (351)
54 PRK13536 nodulation factor exp 99.9 7.1E-22 1.5E-26 180.8 13.8 128 60-189 58-215 (340)
55 cd03235 ABC_Metallic_Cations A 99.9 6.9E-22 1.5E-26 169.2 12.9 144 62-207 18-192 (213)
56 cd03218 ABC_YhbG The ABC trans 99.9 9.2E-22 2E-26 170.5 13.7 145 61-207 18-193 (232)
57 cd03231 ABC_CcmA_heme_exporter 99.9 1.2E-21 2.5E-26 166.7 14.1 145 61-207 18-185 (201)
58 PRK11248 tauB taurine transpor 99.9 1.2E-21 2.6E-26 172.7 14.5 144 62-207 20-189 (255)
59 cd03266 ABC_NatA_sodium_export 99.9 6.2E-22 1.3E-26 170.0 12.4 144 62-207 24-196 (218)
60 PRK11247 ssuB aliphatic sulfon 99.9 1E-21 2.2E-26 173.3 14.1 145 61-207 30-194 (257)
61 COG0410 LivF ABC-type branched 99.9 4.5E-22 9.7E-27 169.0 11.3 134 61-196 21-185 (237)
62 TIGR01186 proV glycine betaine 99.9 7.6E-22 1.7E-26 181.7 13.8 128 61-190 11-173 (363)
63 cd03292 ABC_FtsE_transporter F 99.9 8.9E-22 1.9E-26 168.5 13.2 144 62-207 20-196 (214)
64 TIGR02315 ABC_phnC phosphonate 99.9 8.3E-22 1.8E-26 172.0 13.1 145 61-207 20-206 (243)
65 cd03301 ABC_MalK_N The N-termi 99.9 9E-22 1.9E-26 168.5 13.0 145 61-207 18-191 (213)
66 cd03256 ABC_PhnC_transporter A 99.9 1.1E-21 2.4E-26 170.9 13.6 144 62-207 20-205 (241)
67 cd03214 ABC_Iron-Siderophores_ 99.9 1.1E-21 2.3E-26 164.1 13.0 139 62-207 18-158 (180)
68 PRK11000 maltose/maltodextrin 99.9 9.1E-22 2E-26 182.0 13.8 116 62-179 22-165 (369)
69 TIGR03258 PhnT 2-aminoethylpho 99.9 9.9E-22 2.1E-26 181.1 13.7 115 62-178 24-168 (362)
70 TIGR01288 nodI ATP-binding ABC 99.9 9.6E-22 2.1E-26 177.4 13.3 116 61-178 22-166 (303)
71 PRK09452 potA putrescine/sperm 99.9 1.1E-21 2.5E-26 181.4 14.0 116 62-179 33-176 (375)
72 cd03296 ABC_CysA_sulfate_impor 99.9 1.2E-21 2.6E-26 170.8 13.3 145 61-207 20-197 (239)
73 PRK10851 sulfate/thiosulfate t 99.9 1.3E-21 2.8E-26 179.9 14.0 127 62-190 21-180 (353)
74 cd03298 ABC_ThiQ_thiamine_tran 99.9 1.4E-21 3E-26 167.2 13.3 143 63-207 18-189 (211)
75 PRK13539 cytochrome c biogenes 99.9 1.7E-21 3.7E-26 166.4 13.5 145 61-208 20-188 (207)
76 cd03263 ABC_subfamily_A The AB 99.9 1.8E-21 3.9E-26 167.4 13.7 117 61-179 20-165 (220)
77 COG4608 AppF ABC-type oligopep 99.9 8.9E-22 1.9E-26 171.4 11.8 141 59-207 29-170 (268)
78 PRK11153 metN DL-methionine tr 99.9 1.6E-21 3.5E-26 178.8 14.0 116 61-178 23-171 (343)
79 PRK13647 cbiO cobalt transport 99.9 1.6E-21 3.6E-26 173.5 13.5 145 61-207 23-198 (274)
80 PRK11607 potG putrescine trans 99.9 1.7E-21 3.6E-26 180.5 13.8 115 62-178 38-180 (377)
81 cd03258 ABC_MetN_methionine_tr 99.9 2E-21 4.2E-26 168.7 13.4 145 61-207 23-201 (233)
82 TIGR03864 PQQ_ABC_ATP ABC tran 99.9 2.5E-21 5.4E-26 168.5 14.0 144 62-207 20-193 (236)
83 cd03294 ABC_Pro_Gly_Bertaine T 99.9 1.5E-21 3.3E-26 173.2 12.9 145 61-207 42-221 (269)
84 PRK10908 cell division protein 99.9 2.3E-21 5.1E-26 167.1 13.6 144 62-207 21-197 (222)
85 PRK10584 putative ABC transpor 99.9 2.2E-21 4.7E-26 167.9 13.4 144 62-207 29-207 (228)
86 COG4559 ABC-type hemin transpo 99.9 1.9E-21 4.1E-26 163.1 12.4 184 61-255 19-240 (259)
87 PRK10070 glycine betaine trans 99.9 2.4E-21 5.2E-26 180.4 14.1 127 61-189 46-207 (400)
88 cd03264 ABC_drug_resistance_li 99.9 2.8E-21 6E-26 165.3 13.4 142 62-207 19-189 (211)
89 PRK13641 cbiO cobalt transport 99.9 2.4E-21 5.1E-26 173.6 13.3 144 61-206 25-204 (287)
90 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.9 5E-21 1.1E-25 165.5 14.8 144 61-207 40-202 (224)
91 PRK13541 cytochrome c biogenes 99.9 6.3E-21 1.4E-25 161.4 14.9 143 63-208 20-184 (195)
92 TIGR03522 GldA_ABC_ATP gliding 99.9 2.7E-21 5.7E-26 174.4 13.4 115 62-178 21-164 (301)
93 TIGR03411 urea_trans_UrtD urea 99.9 4E-21 8.6E-26 167.7 14.1 144 61-207 20-202 (242)
94 cd03237 ABC_RNaseL_inhibitor_d 99.9 4.1E-21 9E-26 168.4 14.0 140 66-207 22-176 (246)
95 PRK13540 cytochrome c biogenes 99.9 3.9E-21 8.5E-26 163.3 13.3 145 61-207 19-187 (200)
96 PRK13637 cbiO cobalt transport 99.9 4.1E-21 8.9E-26 172.0 13.9 119 61-179 25-176 (287)
97 PRK13638 cbiO cobalt transport 99.9 3.3E-21 7.1E-26 171.2 13.2 144 61-207 19-196 (271)
98 cd03295 ABC_OpuCA_Osmoprotecti 99.9 4E-21 8.6E-26 167.8 13.5 144 62-207 20-196 (242)
99 TIGR03771 anch_rpt_ABC anchore 99.9 6.1E-21 1.3E-25 164.8 14.5 139 66-207 3-173 (223)
100 cd03224 ABC_TM1139_LivF_branch 99.9 3.4E-21 7.3E-26 165.8 12.8 143 62-207 19-192 (222)
101 PRK10771 thiQ thiamine transpo 99.9 3.5E-21 7.6E-26 167.1 12.9 143 63-207 19-190 (232)
102 PRK11144 modC molybdate transp 99.9 4E-21 8.6E-26 176.8 13.9 114 63-178 18-159 (352)
103 PRK13650 cbiO cobalt transport 99.9 3.5E-21 7.6E-26 171.8 13.1 145 61-207 25-201 (279)
104 TIGR02142 modC_ABC molybdenum 99.9 4.4E-21 9.6E-26 176.6 14.2 115 63-179 17-163 (354)
105 PRK11300 livG leucine/isoleuci 99.9 4.1E-21 8.9E-26 168.8 13.3 145 61-207 23-214 (255)
106 PRK11124 artP arginine transpo 99.9 6.1E-21 1.3E-25 166.6 14.2 144 62-207 21-201 (242)
107 PRK11264 putative amino-acid A 99.9 6.4E-21 1.4E-25 167.1 14.3 145 61-207 21-204 (250)
108 TIGR03415 ABC_choXWV_ATP choli 99.9 6.8E-21 1.5E-25 176.3 15.1 117 60-178 41-195 (382)
109 TIGR01277 thiQ thiamine ABC tr 99.9 4.1E-21 8.8E-26 164.6 12.7 115 63-179 18-160 (213)
110 PRK11831 putative ABC transpor 99.9 4.9E-21 1.1E-25 169.9 13.6 144 62-207 26-204 (269)
111 PRK10895 lipopolysaccharide AB 99.9 5E-21 1.1E-25 167.0 13.4 145 61-207 21-197 (241)
112 KOG1533 Predicted GTPase [Gene 99.9 1.3E-21 2.8E-26 165.8 9.2 175 72-248 5-180 (290)
113 PRK13651 cobalt transporter AT 99.9 6E-21 1.3E-25 172.3 14.2 145 61-207 25-225 (305)
114 cd03297 ABC_ModC_molybdenum_tr 99.9 4.8E-21 1E-25 164.2 12.9 143 62-207 17-192 (214)
115 PRK09493 glnQ glutamine ABC tr 99.9 5.5E-21 1.2E-25 166.7 13.5 145 61-207 19-196 (240)
116 TIGR03740 galliderm_ABC gallid 99.9 6.8E-21 1.5E-25 164.3 13.9 144 62-207 19-184 (223)
117 PRK13644 cbiO cobalt transport 99.9 4.6E-21 1E-25 170.6 13.0 144 61-207 20-196 (274)
118 cd03260 ABC_PstB_phosphate_tra 99.9 4.8E-21 1E-25 165.6 12.6 145 62-207 19-200 (227)
119 PRK13635 cbiO cobalt transport 99.9 5.5E-21 1.2E-25 170.5 13.2 145 61-207 25-201 (279)
120 PRK13543 cytochrome c biogenes 99.9 1.3E-20 2.9E-25 161.7 14.6 145 61-207 29-197 (214)
121 cd03267 ABC_NatA_like Similar 99.9 9.8E-21 2.1E-25 164.9 13.8 145 61-207 39-214 (236)
122 cd03257 ABC_NikE_OppD_transpor 99.9 8.6E-21 1.9E-25 163.8 13.3 145 61-207 23-206 (228)
123 PRK13643 cbiO cobalt transport 99.8 1E-20 2.2E-25 169.6 13.8 144 61-207 24-204 (288)
124 PRK13652 cbiO cobalt transport 99.8 8.3E-21 1.8E-25 169.2 13.1 117 61-179 22-169 (277)
125 PRK15056 manganese/iron transp 99.8 9.2E-21 2E-25 168.4 13.3 144 62-207 26-202 (272)
126 PRK10619 histidine/lysine/argi 99.8 1.1E-20 2.4E-25 166.5 13.6 144 62-207 24-212 (257)
127 PRK11288 araG L-arabinose tran 99.8 1E-20 2.2E-25 181.7 14.2 147 59-207 269-456 (501)
128 PRK13649 cbiO cobalt transport 99.8 1.1E-20 2.5E-25 168.4 13.6 144 62-207 26-205 (280)
129 PRK13634 cbiO cobalt transport 99.8 1E-20 2.3E-25 169.7 13.3 117 61-179 25-177 (290)
130 PRK10575 iron-hydroxamate tran 99.8 7.8E-21 1.7E-25 168.3 12.4 116 62-179 30-179 (265)
131 PRK10762 D-ribose transporter 99.8 1.3E-20 2.8E-25 180.9 14.8 145 61-207 22-201 (501)
132 COG1117 PstB ABC-type phosphat 99.8 6.9E-21 1.5E-25 159.9 11.2 145 61-207 25-208 (253)
133 PRK09700 D-allose transporter 99.8 1.3E-20 2.8E-25 181.3 14.7 144 61-206 23-204 (510)
134 PRK11231 fecE iron-dicitrate t 99.8 1E-20 2.3E-25 166.4 12.9 143 62-207 21-198 (255)
135 COG4598 HisP ABC-type histidin 99.8 1.3E-20 2.8E-25 154.6 12.4 158 39-207 10-212 (256)
136 PRK09700 D-allose transporter 99.8 1.2E-20 2.5E-25 181.6 14.3 146 60-207 280-469 (510)
137 PRK13646 cbiO cobalt transport 99.8 1.1E-20 2.5E-25 169.1 13.3 145 61-207 25-206 (286)
138 PRK15439 autoinducer 2 ABC tra 99.8 1.3E-20 2.9E-25 181.2 14.7 117 61-179 29-172 (510)
139 PRK13548 hmuV hemin importer A 99.8 1.3E-20 2.7E-25 166.3 13.4 145 61-207 20-201 (258)
140 PRK13632 cbiO cobalt transport 99.8 1E-20 2.3E-25 168.0 12.8 145 61-207 27-203 (271)
141 COG4586 ABC-type uncharacteriz 99.8 6.4E-21 1.4E-25 165.2 11.0 147 59-207 40-217 (325)
142 PRK10253 iron-enterobactin tra 99.8 1.1E-20 2.3E-25 167.4 12.7 116 61-178 25-174 (265)
143 PRK14250 phosphate ABC transpo 99.8 1E-20 2.3E-25 165.2 12.5 145 61-207 21-192 (241)
144 TIGR00972 3a0107s01c2 phosphat 99.8 1.5E-20 3.2E-25 164.7 13.5 145 61-207 19-203 (247)
145 PRK15079 oligopeptide ABC tran 99.8 1.1E-20 2.3E-25 172.4 13.1 118 61-179 39-193 (331)
146 PRK10938 putative molybdenum t 99.8 1.2E-20 2.7E-25 180.6 13.9 144 61-207 21-195 (490)
147 PRK10247 putative ABC transpor 99.8 1.6E-20 3.5E-25 162.4 13.3 145 61-207 25-198 (225)
148 TIGR03005 ectoine_ehuA ectoine 99.8 1.4E-20 3.1E-25 165.2 13.2 144 62-207 19-207 (252)
149 PRK13639 cbiO cobalt transport 99.8 1.9E-20 4E-25 166.8 13.9 144 61-207 20-197 (275)
150 TIGR02982 heterocyst_DevA ABC 99.8 1.8E-20 4E-25 161.4 13.4 145 61-207 23-202 (220)
151 TIGR02769 nickel_nikE nickel i 99.8 1.9E-20 4.1E-25 165.8 13.8 145 61-207 29-211 (265)
152 PRK13636 cbiO cobalt transport 99.8 1.6E-20 3.5E-25 167.9 13.2 116 61-178 24-172 (283)
153 COG3845 ABC-type uncharacteriz 99.8 1.6E-20 3.4E-25 174.1 13.3 141 60-202 21-195 (501)
154 PRK09544 znuC high-affinity zi 99.8 2.2E-20 4.8E-25 164.2 13.7 144 62-207 23-181 (251)
155 PRK13549 xylose transporter AT 99.8 2.3E-20 5E-25 179.4 15.0 116 61-178 23-174 (506)
156 PF00005 ABC_tran: ABC transpo 99.8 6.5E-21 1.4E-25 151.7 9.3 111 65-175 7-136 (137)
157 PRK13631 cbiO cobalt transport 99.8 2.3E-20 5E-25 169.6 14.0 145 61-207 44-236 (320)
158 cd03300 ABC_PotA_N PotA is an 99.8 2.7E-20 5.8E-25 161.6 13.8 144 62-207 19-191 (232)
159 TIGR02770 nickel_nikD nickel i 99.8 2.7E-20 5.8E-25 161.4 13.7 117 63-179 6-157 (230)
160 TIGR03873 F420-0_ABC_ATP propo 99.8 1.9E-20 4.2E-25 164.8 13.0 144 62-207 20-197 (256)
161 PRK13645 cbiO cobalt transport 99.8 2.1E-20 4.6E-25 167.5 13.4 117 61-179 29-182 (289)
162 PRK11614 livF leucine/isoleuci 99.8 1.3E-20 2.8E-25 164.0 11.6 145 61-207 23-197 (237)
163 PRK11022 dppD dipeptide transp 99.8 1.9E-20 4.1E-25 170.5 13.1 119 61-179 25-185 (326)
164 cd03216 ABC_Carb_Monos_I This 99.8 1.5E-20 3.3E-25 154.9 11.2 124 62-207 19-142 (163)
165 PRK15112 antimicrobial peptide 99.8 1.9E-20 4.1E-25 166.0 12.6 145 61-207 31-210 (267)
166 PRK11308 dppF dipeptide transp 99.8 1.8E-20 3.8E-25 170.8 12.7 118 61-179 33-186 (327)
167 TIGR03410 urea_trans_UrtE urea 99.8 2E-20 4.4E-25 162.0 12.5 145 61-207 18-192 (230)
168 TIGR01978 sufC FeS assembly AT 99.8 3.5E-20 7.6E-25 161.6 14.0 144 62-207 19-204 (243)
169 COG4619 ABC-type uncharacteriz 99.8 4.5E-20 9.8E-25 149.8 13.5 143 61-205 21-191 (223)
170 PRK13648 cbiO cobalt transport 99.8 2.5E-20 5.4E-25 165.4 13.2 145 61-207 27-203 (269)
171 PRK13633 cobalt transporter AT 99.8 2.5E-20 5.5E-25 166.3 13.2 144 61-207 28-205 (280)
172 cd03245 ABCC_bacteriocin_expor 99.8 1.7E-20 3.6E-25 161.4 11.6 146 61-207 22-199 (220)
173 PRK10762 D-ribose transporter 99.8 3.1E-20 6.7E-25 178.3 14.4 146 60-207 269-455 (501)
174 PRK11288 araG L-arabinose tran 99.8 3.5E-20 7.5E-25 178.0 14.4 144 61-207 22-200 (501)
175 PRK10418 nikD nickel transport 99.8 4.6E-20 1E-24 162.3 14.0 147 61-207 21-201 (254)
176 PRK10982 galactose/methyl gala 99.8 3.8E-20 8.3E-25 177.2 14.6 144 61-207 16-194 (491)
177 TIGR02323 CP_lyasePhnK phospho 99.8 4.5E-20 9.8E-25 162.1 13.9 144 62-207 22-209 (253)
178 PRK13545 tagH teichoic acids e 99.8 2.6E-20 5.7E-25 176.8 13.3 116 61-178 42-174 (549)
179 cd03299 ABC_ModC_like Archeal 99.8 3.3E-20 7.1E-25 161.4 12.9 143 63-207 19-190 (235)
180 PRK13640 cbiO cobalt transport 99.8 3.3E-20 7.2E-25 165.7 13.1 117 61-179 25-175 (282)
181 PRK13549 xylose transporter AT 99.8 3.3E-20 7.1E-25 178.3 14.0 145 61-207 280-465 (506)
182 COG1123 ATPase components of v 99.8 2.6E-20 5.7E-25 176.3 12.9 148 59-207 307-490 (539)
183 cd03222 ABC_RNaseL_inhibitor T 99.8 2.7E-20 5.7E-25 155.4 11.5 82 65-178 21-102 (177)
184 PRK15439 autoinducer 2 ABC tra 99.8 3.1E-20 6.6E-25 178.7 13.5 146 60-207 280-463 (510)
185 PRK11701 phnK phosphonate C-P 99.8 3.5E-20 7.6E-25 163.4 12.8 145 61-207 24-212 (258)
186 PRK13546 teichoic acids export 99.8 4.9E-20 1.1E-24 163.2 13.6 116 61-178 42-174 (264)
187 TIGR02633 xylG D-xylose ABC tr 99.8 4.1E-20 9E-25 177.3 14.2 145 61-207 278-463 (500)
188 PRK15093 antimicrobial peptide 99.8 3.9E-20 8.4E-25 168.8 13.3 119 61-179 25-190 (330)
189 TIGR02324 CP_lyasePhnL phospho 99.8 7.7E-20 1.7E-24 157.7 14.4 146 61-207 26-209 (224)
190 PRK13642 cbiO cobalt transport 99.8 4.1E-20 8.9E-25 164.7 13.0 144 61-207 25-201 (277)
191 cd03234 ABCG_White The White s 99.8 5.4E-20 1.2E-24 159.1 13.3 144 61-207 25-203 (226)
192 PRK15177 Vi polysaccharide exp 99.8 4E-20 8.7E-25 158.8 12.4 113 63-177 7-134 (213)
193 PRK09473 oppD oligopeptide tra 99.8 4.3E-20 9.3E-25 168.5 12.7 119 61-179 34-193 (330)
194 PRK14247 phosphate ABC transpo 99.8 8.1E-20 1.7E-24 160.2 13.8 145 62-207 22-205 (250)
195 cd03215 ABC_Carb_Monos_II This 99.8 9.3E-20 2E-24 152.6 13.6 135 61-207 18-164 (182)
196 PRK14267 phosphate ABC transpo 99.8 8.4E-20 1.8E-24 160.4 13.7 146 61-207 22-208 (253)
197 PRK10419 nikE nickel transport 99.8 7.5E-20 1.6E-24 162.3 13.3 145 61-207 30-212 (268)
198 cd03236 ABC_RNaseL_inhibitor_d 99.8 9.1E-20 2E-24 160.7 13.6 140 66-207 23-199 (255)
199 cd03230 ABC_DR_subfamily_A Thi 99.8 7.1E-20 1.5E-24 152.1 12.3 137 62-207 19-155 (173)
200 PRK09984 phosphonate/organopho 99.8 9.1E-20 2E-24 161.1 13.6 145 61-207 22-213 (262)
201 PRK14241 phosphate transporter 99.8 9E-20 1.9E-24 160.8 13.4 145 62-207 23-207 (258)
202 cd03252 ABCC_Hemolysin The ABC 99.8 6.1E-20 1.3E-24 159.7 11.8 118 62-179 21-170 (237)
203 TIGR00968 3a0106s01 sulfate AB 99.8 1E-19 2.3E-24 158.5 13.2 115 63-179 20-162 (237)
204 PRK14242 phosphate transporter 99.8 1.2E-19 2.7E-24 159.3 13.7 146 61-207 24-208 (253)
205 PRK03695 vitamin B12-transport 99.8 1.1E-19 2.3E-24 159.5 13.2 144 61-207 14-193 (248)
206 cd03238 ABC_UvrA The excision 99.8 1.6E-19 3.4E-24 150.6 13.4 135 60-207 12-149 (176)
207 PRK10261 glutathione transport 99.8 6.8E-20 1.5E-24 180.1 13.0 117 61-179 342-495 (623)
208 COG4674 Uncharacterized ABC-ty 99.8 1.3E-20 2.8E-25 156.2 6.7 144 61-207 23-206 (249)
209 PRK13547 hmuV hemin importer A 99.8 1.1E-19 2.5E-24 161.5 13.1 144 61-207 19-215 (272)
210 cd03251 ABCC_MsbA MsbA is an e 99.8 7.8E-20 1.7E-24 158.7 11.8 144 61-207 20-197 (234)
211 cd03248 ABCC_TAP TAP, the Tran 99.8 9E-20 2E-24 157.5 12.1 144 61-207 32-209 (226)
212 cd03229 ABC_Class3 This class 99.8 7.1E-20 1.5E-24 152.8 11.0 137 63-207 20-161 (178)
213 PRK14254 phosphate ABC transpo 99.8 1.2E-19 2.5E-24 162.5 13.0 146 61-207 57-239 (285)
214 TIGR02633 xylG D-xylose ABC tr 99.8 1.5E-19 3.3E-24 173.5 14.6 118 61-179 19-173 (500)
215 PRK13409 putative ATPase RIL; 99.8 8.8E-20 1.9E-24 177.9 13.1 140 65-207 361-514 (590)
216 cd03244 ABCC_MRP_domain2 Domai 99.8 8.9E-20 1.9E-24 157.0 11.6 120 60-179 21-171 (221)
217 PRK10982 galactose/methyl gala 99.8 1.1E-19 2.4E-24 174.1 13.4 147 60-207 265-451 (491)
218 cd03213 ABCG_EPDR ABCG transpo 99.8 2.3E-19 5E-24 151.8 13.9 136 61-207 27-171 (194)
219 cd03223 ABCD_peroxisomal_ALDP 99.8 1.3E-19 2.8E-24 149.7 12.0 104 61-178 19-122 (166)
220 TIGR03269 met_CoM_red_A2 methy 99.8 1.2E-19 2.6E-24 175.0 13.6 145 61-207 18-229 (520)
221 COG4148 ModC ABC-type molybdat 99.8 6.7E-20 1.4E-24 159.4 10.5 138 66-205 21-186 (352)
222 TIGR01187 potA spermidine/putr 99.8 1.1E-19 2.3E-24 165.6 12.4 104 74-179 1-132 (325)
223 TIGR03269 met_CoM_red_A2 methy 99.8 1.6E-19 3.5E-24 174.0 14.3 146 61-207 302-488 (520)
224 CHL00131 ycf16 sulfate ABC tra 99.8 1.9E-19 4E-24 158.0 13.4 145 61-207 25-211 (252)
225 cd03233 ABC_PDR_domain1 The pl 99.8 2.5E-19 5.4E-24 152.6 13.7 114 62-179 26-150 (202)
226 cd03254 ABCC_Glucan_exporter_l 99.8 1.6E-19 3.5E-24 156.1 12.7 119 61-179 21-171 (229)
227 cd03232 ABC_PDR_domain2 The pl 99.8 3.1E-19 6.6E-24 150.8 13.9 130 63-207 27-168 (192)
228 cd03290 ABCC_SUR1_N The SUR do 99.8 1.8E-19 3.9E-24 154.9 12.7 146 62-207 20-202 (218)
229 cd03246 ABCC_Protease_Secretio 99.8 1.5E-19 3.3E-24 150.1 11.8 133 62-207 21-156 (173)
230 PRK14273 phosphate ABC transpo 99.8 1.9E-19 4.1E-24 158.3 13.0 146 61-207 25-209 (254)
231 PRK14235 phosphate transporter 99.8 2.2E-19 4.7E-24 159.2 13.4 146 61-207 37-222 (267)
232 PRK14268 phosphate ABC transpo 99.8 2.2E-19 4.8E-24 158.3 13.4 146 61-207 30-213 (258)
233 PRK10261 glutathione transport 99.8 1.2E-19 2.5E-24 178.5 12.8 133 61-193 34-214 (623)
234 COG4152 ABC-type uncharacteriz 99.8 2.5E-19 5.4E-24 153.3 13.1 140 60-202 19-185 (300)
235 PRK15064 ABC transporter ATP-b 99.8 2E-19 4.4E-24 173.8 13.8 117 61-178 19-186 (530)
236 PRK14269 phosphate ABC transpo 99.8 3.2E-19 7E-24 156.2 13.6 118 62-179 21-174 (246)
237 PRK09580 sufC cysteine desulfu 99.8 3.4E-19 7.5E-24 155.9 13.7 145 61-207 19-205 (248)
238 TIGR02868 CydC thiol reductant 99.8 1.6E-19 3.5E-24 174.3 12.7 118 61-178 353-501 (529)
239 PRK14259 phosphate ABC transpo 99.8 3.3E-19 7.2E-24 158.2 13.7 146 61-207 31-213 (269)
240 PRK10744 pstB phosphate transp 99.8 2.6E-19 5.6E-24 158.1 12.9 117 62-178 32-187 (260)
241 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.8 3E-19 6.5E-24 155.4 13.0 119 61-179 21-171 (238)
242 cd03369 ABCC_NFT1 Domain 2 of 99.8 2.5E-19 5.4E-24 152.8 12.3 112 61-178 26-156 (207)
243 PRK11819 putative ABC transpor 99.8 3.2E-19 6.9E-24 173.3 14.6 117 60-179 24-195 (556)
244 cd03247 ABCC_cytochrome_bd The 99.8 2.5E-19 5.4E-24 149.4 11.8 109 62-179 21-130 (178)
245 COG0488 Uup ATPase components 99.8 4E-19 8.6E-24 170.2 14.7 142 60-207 20-210 (530)
246 PRK13409 putative ATPase RIL; 99.8 2.3E-19 5E-24 175.0 13.2 139 65-206 95-270 (590)
247 PRK15134 microcin C ABC transp 99.8 2E-19 4.3E-24 173.8 12.7 119 61-179 27-188 (529)
248 cd03250 ABCC_MRP_domain1 Domai 99.8 5.4E-19 1.2E-23 150.4 13.6 119 61-179 23-159 (204)
249 PRK10636 putative ABC transpor 99.8 3.6E-19 7.9E-24 175.4 14.4 118 60-179 18-181 (638)
250 PRK10938 putative molybdenum t 99.8 3.8E-19 8.2E-24 170.3 14.1 146 61-208 278-463 (490)
251 cd03253 ABCC_ATM1_transporter 99.8 2.4E-19 5.3E-24 155.7 11.5 118 62-179 20-169 (236)
252 cd03228 ABCC_MRP_Like The MRP 99.8 4.3E-19 9.2E-24 147.2 12.4 106 61-179 20-128 (171)
253 PRK14251 phosphate ABC transpo 99.8 5.7E-19 1.2E-23 154.9 13.9 144 62-207 23-206 (251)
254 PRK15134 microcin C ABC transp 99.8 2.5E-19 5.5E-24 173.1 12.7 144 61-207 304-486 (529)
255 COG1119 ModF ABC-type molybden 99.8 6.7E-19 1.5E-23 150.9 13.8 140 63-204 51-229 (257)
256 PRK14244 phosphate ABC transpo 99.8 5.6E-19 1.2E-23 155.0 13.6 146 61-207 23-208 (251)
257 COG4161 ArtP ABC-type arginine 99.8 5.7E-19 1.2E-23 142.7 12.2 142 64-207 23-201 (242)
258 COG0444 DppD ABC-type dipeptid 99.8 3.2E-19 6.9E-24 158.6 11.6 149 59-207 21-214 (316)
259 PRK14275 phosphate ABC transpo 99.8 5.9E-19 1.3E-23 158.0 13.5 119 61-179 57-214 (286)
260 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.8 4E-19 8.7E-24 143.5 11.2 82 63-178 20-101 (144)
261 PRK14274 phosphate ABC transpo 99.8 6.8E-19 1.5E-23 155.3 13.6 118 62-179 31-187 (259)
262 KOG1534 Putative transcription 99.8 4.8E-19 1E-23 148.0 11.8 172 71-246 5-179 (273)
263 PRK14248 phosphate ABC transpo 99.8 6.9E-19 1.5E-23 156.0 13.5 146 61-207 39-223 (268)
264 PRK14256 phosphate ABC transpo 99.8 7E-19 1.5E-23 154.5 13.5 145 62-207 23-207 (252)
265 cd03217 ABC_FeS_Assembly ABC-t 99.8 6.5E-19 1.4E-23 149.7 12.7 136 61-207 18-164 (200)
266 COG1123 ATPase components of v 99.8 4.6E-19 1E-23 167.9 12.9 136 59-194 25-201 (539)
267 COG1129 MglA ABC-type sugar tr 99.8 6.9E-19 1.5E-23 165.6 13.9 149 60-210 25-224 (500)
268 PRK14262 phosphate ABC transpo 99.8 8.6E-19 1.9E-23 153.7 13.6 118 62-179 22-178 (250)
269 PRK14270 phosphate ABC transpo 99.8 8.9E-19 1.9E-23 153.7 13.7 144 62-207 23-206 (251)
270 PRK11147 ABC transporter ATPas 99.8 6.6E-19 1.4E-23 173.5 14.3 115 61-179 21-188 (635)
271 PRK14245 phosphate ABC transpo 99.8 1E-18 2.2E-23 153.3 13.8 118 62-179 22-178 (250)
272 PRK14240 phosphate transporter 99.8 9.2E-19 2E-23 153.5 13.5 145 62-207 22-205 (250)
273 COG1134 TagH ABC-type polysacc 99.8 4.7E-19 1E-23 151.9 11.2 144 61-207 45-207 (249)
274 PRK15064 ABC transporter ATP-b 99.8 6.8E-19 1.5E-23 170.1 13.6 116 62-179 338-470 (530)
275 PLN03211 ABC transporter G-25; 99.8 6.7E-19 1.5E-23 173.7 13.7 146 62-207 87-266 (659)
276 PRK14263 phosphate ABC transpo 99.8 1.1E-18 2.3E-23 154.4 13.6 119 61-179 26-181 (261)
277 PRK14260 phosphate ABC transpo 99.8 9.8E-19 2.1E-23 154.3 13.3 146 61-207 25-209 (259)
278 PRK14249 phosphate ABC transpo 99.8 1.1E-18 2.3E-23 153.3 13.3 146 61-207 22-206 (251)
279 PRK14239 phosphate transporter 99.8 9.1E-19 2E-23 153.6 12.9 146 61-207 23-207 (252)
280 PRK14272 phosphate ABC transpo 99.8 1.2E-18 2.7E-23 152.8 13.7 146 61-207 22-207 (252)
281 PRK14246 phosphate ABC transpo 99.8 1.2E-18 2.6E-23 153.7 13.5 147 60-207 27-212 (257)
282 TIGR03719 ABC_ABC_ChvD ATP-bin 99.8 1.3E-18 2.8E-23 169.0 14.8 116 61-179 23-193 (552)
283 PRK13768 GTPase; Provisional 99.8 3.1E-18 6.6E-23 150.8 15.8 179 70-250 3-181 (253)
284 COG4133 CcmA ABC-type transpor 99.8 1.6E-18 3.5E-23 143.0 12.9 116 61-178 20-161 (209)
285 PRK14243 phosphate transporter 99.8 1.2E-18 2.6E-23 154.2 13.1 146 61-207 28-210 (264)
286 PRK14237 phosphate transporter 99.8 1.5E-18 3.3E-23 153.8 13.7 146 61-207 38-222 (267)
287 PRK14264 phosphate ABC transpo 99.8 1.2E-18 2.7E-23 157.3 13.2 146 61-207 63-259 (305)
288 COG1101 PhnK ABC-type uncharac 99.8 7.1E-19 1.5E-23 148.0 10.7 144 65-208 28-210 (263)
289 COG4988 CydD ABC-type transpor 99.8 9.2E-19 2E-23 165.5 12.7 121 59-179 337-488 (559)
290 PRK14253 phosphate ABC transpo 99.8 1.8E-18 3.9E-23 151.6 13.7 146 61-207 21-204 (249)
291 PRK14236 phosphate transporter 99.8 1.4E-18 3E-23 154.4 13.2 146 61-207 43-227 (272)
292 PRK14258 phosphate ABC transpo 99.8 1.5E-18 3.2E-23 153.3 13.2 147 61-207 25-211 (261)
293 TIGR01257 rim_protein retinal- 99.8 1.1E-18 2.5E-23 186.5 14.3 127 61-189 1957-2113(2272)
294 PRK14265 phosphate ABC transpo 99.8 1.6E-18 3.6E-23 154.2 13.0 146 61-207 38-220 (274)
295 PRK10522 multidrug transporter 99.8 2.3E-18 5E-23 167.0 15.0 119 61-179 341-481 (547)
296 TIGR01257 rim_protein retinal- 99.8 1.1E-18 2.5E-23 186.5 13.9 143 61-207 948-1120(2272)
297 PRK11819 putative ABC transpor 99.8 1.7E-18 3.7E-23 168.2 14.0 115 61-178 342-476 (556)
298 PRK14271 phosphate ABC transpo 99.8 2.5E-18 5.5E-23 153.2 13.9 119 61-179 39-195 (276)
299 PRK10636 putative ABC transpor 99.8 1.6E-18 3.4E-23 170.9 13.7 116 62-179 331-462 (638)
300 TIGR03719 ABC_ABC_ChvD ATP-bin 99.8 2E-18 4.3E-23 167.7 14.2 117 61-179 340-475 (552)
301 PRK11147 ABC transporter ATPas 99.8 1.5E-18 3.2E-23 171.1 13.5 116 62-179 338-472 (635)
302 PRK14255 phosphate ABC transpo 99.8 2.4E-18 5.3E-23 151.0 13.4 146 61-207 23-207 (252)
303 TIGR03797 NHPM_micro_ABC2 NHPM 99.8 1.4E-18 3.1E-23 172.6 13.4 118 61-178 471-619 (686)
304 COG2274 SunT ABC-type bacterio 99.8 9.2E-19 2E-23 172.7 11.7 116 63-178 493-640 (709)
305 PRK14261 phosphate ABC transpo 99.8 2.7E-18 5.9E-23 150.9 13.5 145 62-207 25-208 (253)
306 PRK14238 phosphate transporter 99.8 2.1E-18 4.5E-23 153.3 12.6 145 62-207 43-226 (271)
307 cd03291 ABCC_CFTR1 The CFTR su 99.8 2.2E-18 4.9E-23 153.9 12.8 118 61-178 55-190 (282)
308 KOG0058 Peptide exporter, ABC 99.8 1.7E-18 3.7E-23 166.9 12.5 117 63-179 488-636 (716)
309 COG4172 ABC-type uncharacteriz 99.8 1.9E-18 4.1E-23 156.9 12.1 132 61-194 305-473 (534)
310 cd03289 ABCC_CFTR2 The CFTR su 99.8 1.4E-18 3E-23 154.8 11.1 116 61-179 22-170 (275)
311 COG4107 PhnK ABC-type phosphon 99.8 7.6E-18 1.6E-22 137.7 14.1 148 59-207 22-212 (258)
312 PRK11176 lipid transporter ATP 99.8 2.3E-18 4.9E-23 168.1 13.2 118 61-178 361-511 (582)
313 PRK10790 putative multidrug tr 99.8 2.4E-18 5.3E-23 168.3 13.2 118 61-178 359-507 (592)
314 PRK11174 cysteine/glutathione 99.8 2.4E-18 5.1E-23 168.2 12.9 117 61-178 368-516 (588)
315 TIGR01194 cyc_pep_trnsptr cycl 99.8 4.1E-18 8.9E-23 165.6 14.4 118 61-178 360-501 (555)
316 cd03288 ABCC_SUR2 The SUR doma 99.8 4.3E-18 9.3E-23 150.1 13.0 116 61-178 39-187 (257)
317 PLN03073 ABC transporter F fam 99.8 3.5E-18 7.5E-23 169.8 13.8 141 62-207 528-684 (718)
318 PRK14266 phosphate ABC transpo 99.8 4.4E-18 9.4E-23 149.2 12.9 118 62-179 22-178 (250)
319 cd00267 ABC_ATPase ABC (ATP-bi 99.8 4.8E-18 1E-22 138.8 12.0 94 63-179 19-112 (157)
320 TIGR02203 MsbA_lipidA lipid A 99.8 5E-18 1.1E-22 165.2 13.9 119 61-179 350-501 (571)
321 TIGR03796 NHPM_micro_ABC1 NHPM 99.8 3.1E-18 6.7E-23 170.8 12.7 143 61-206 497-671 (710)
322 TIGR02857 CydD thiol reductant 99.8 4.5E-18 9.9E-23 164.2 13.0 117 62-178 341-489 (529)
323 PRK14257 phosphate ABC transpo 99.8 9E-18 1.9E-22 153.1 14.2 119 61-179 100-257 (329)
324 TIGR01842 type_I_sec_PrtD type 99.8 5.5E-18 1.2E-22 164.3 13.2 116 61-178 336-485 (544)
325 TIGR00955 3a01204 The Eye Pigm 99.8 5.4E-18 1.2E-22 166.6 13.2 147 61-207 43-226 (617)
326 COG4778 PhnL ABC-type phosphon 99.8 3.9E-18 8.4E-23 138.8 10.1 145 61-206 29-211 (235)
327 PRK13657 cyclic beta-1,2-gluca 99.8 6.4E-18 1.4E-22 165.2 13.5 119 61-179 353-503 (588)
328 PRK11160 cysteine/glutathione 99.8 5.1E-18 1.1E-22 165.5 12.1 118 61-178 358-506 (574)
329 COG1159 Era GTPase [General fu 99.8 3.6E-18 7.9E-23 150.1 9.7 125 68-248 5-131 (298)
330 TIGR00958 3a01208 Conjugate Tr 99.8 8.8E-18 1.9E-22 167.6 13.7 119 61-179 499-649 (711)
331 TIGR01193 bacteriocin_ABC ABC- 99.7 7.3E-18 1.6E-22 168.1 12.7 118 61-178 492-642 (708)
332 TIGR00954 3a01203 Peroxysomal 99.7 9.2E-18 2E-22 166.0 13.2 144 61-207 470-639 (659)
333 TIGR02204 MsbA_rel ABC transpo 99.7 1.5E-17 3.2E-22 162.1 14.3 119 61-179 358-508 (576)
334 PRK14252 phosphate ABC transpo 99.7 2E-17 4.3E-22 146.4 13.5 119 61-179 34-193 (265)
335 PRK10789 putative multidrug tr 99.7 1.6E-17 3.4E-22 162.0 13.4 118 61-178 333-482 (569)
336 COG4167 SapF ABC-type antimicr 99.7 2.4E-17 5.1E-22 135.8 12.2 117 59-176 29-178 (267)
337 TIGR03375 type_I_sec_LssB type 99.7 1.3E-17 2.7E-22 166.1 12.6 118 61-178 483-632 (694)
338 TIGR00956 3a01205 Pleiotropic 99.7 1.5E-17 3.3E-22 175.6 13.7 144 62-207 782-962 (1394)
339 KOG0055 Multidrug/pheromone ex 99.7 6.6E-18 1.4E-22 171.0 10.4 147 63-209 373-565 (1228)
340 PRK10535 macrolide transporter 99.7 2.2E-17 4.7E-22 163.1 13.8 144 61-206 26-203 (648)
341 KOG0061 Transporter, ABC super 99.7 1.5E-17 3.2E-22 162.8 12.5 140 66-207 53-230 (613)
342 KOG0057 Mitochondrial Fe/S clu 99.7 9E-18 2E-22 157.3 10.0 142 62-207 371-546 (591)
343 COG1132 MdlB ABC-type multidru 99.7 2.3E-17 5.1E-22 160.6 12.7 116 61-178 347-496 (567)
344 TIGR01192 chvA glucan exporter 99.7 2.4E-17 5.1E-22 161.2 12.7 118 61-178 353-502 (585)
345 COG0488 Uup ATPase components 99.7 3.5E-17 7.6E-22 156.9 13.2 142 61-207 340-496 (530)
346 PLN03140 ABC transporter G fam 99.7 3E-17 6.4E-22 173.4 13.7 146 63-208 900-1080(1470)
347 TIGR01846 type_I_sec_HlyB type 99.7 3E-17 6.5E-22 163.4 13.0 118 61-178 475-624 (694)
348 PLN03073 ABC transporter F fam 99.7 4.4E-17 9.5E-22 162.0 13.9 116 63-179 197-376 (718)
349 COG4136 ABC-type uncharacteriz 99.7 5.9E-17 1.3E-21 129.6 11.6 145 63-209 22-197 (213)
350 PTZ00265 multidrug resistance 99.7 1E-16 2.2E-21 169.8 13.5 119 61-179 1186-1390(1466)
351 COG0396 sufC Cysteine desulfur 99.7 1.7E-16 3.7E-21 134.9 12.1 134 64-197 25-194 (251)
352 TIGR00956 3a01205 Pleiotropic 99.7 7E-17 1.5E-21 170.6 11.9 147 61-207 79-270 (1394)
353 PTZ00265 multidrug resistance 99.7 8.5E-17 1.8E-21 170.3 12.2 119 61-179 403-611 (1466)
354 PLN03232 ABC transporter C fam 99.7 1.5E-16 3.2E-21 169.4 13.9 118 61-178 1254-1402(1495)
355 KOG0055 Multidrug/pheromone ex 99.7 1.3E-16 2.7E-21 161.8 12.3 117 63-179 1010-1158(1228)
356 PLN03130 ABC transporter C fam 99.7 2E-16 4.4E-21 168.9 14.1 118 61-178 1257-1405(1622)
357 TIGR00957 MRP_assoc_pro multi 99.7 2.1E-16 4.6E-21 168.4 13.3 118 61-178 1304-1452(1522)
358 COG4987 CydC ABC-type transpor 99.7 2.9E-16 6.2E-21 147.2 12.3 144 62-207 357-533 (573)
359 COG4618 ArpD ABC-type protease 99.7 4.7E-16 1E-20 144.8 13.5 119 61-179 354-504 (580)
360 cd03270 ABC_UvrA_I The excisio 99.7 1.1E-15 2.3E-20 132.5 14.8 79 127-207 118-199 (226)
361 PTZ00243 ABC transporter; Prov 99.7 3.4E-16 7.3E-21 166.8 13.7 118 61-178 1328-1477(1560)
362 PLN03140 ABC transporter G fam 99.7 1.3E-16 2.8E-21 168.5 10.0 146 62-207 184-397 (1470)
363 COG4172 ABC-type uncharacteriz 99.7 3.9E-16 8.5E-21 141.9 11.2 139 60-198 27-208 (534)
364 cd03278 ABC_SMC_barmotin Barmo 99.7 1.6E-15 3.4E-20 128.8 13.7 110 63-178 17-148 (197)
365 TIGR01271 CFTR_protein cystic 99.6 1.1E-15 2.3E-20 162.7 13.9 118 61-178 444-579 (1490)
366 KOG0059 Lipid exporter ABCA1 a 99.6 7.4E-16 1.6E-20 156.7 11.2 144 61-207 583-758 (885)
367 KOG0062 ATPase component of AB 99.6 4.9E-16 1.1E-20 144.7 8.7 140 65-208 102-256 (582)
368 TIGR01271 CFTR_protein cystic 99.6 1.8E-15 3.8E-20 161.0 13.8 117 61-178 1237-1384(1490)
369 cd03272 ABC_SMC3_euk Eukaryoti 99.6 8.1E-15 1.8E-19 127.8 15.1 111 68-178 22-193 (243)
370 TIGR00957 MRP_assoc_pro multi 99.6 1.3E-15 2.8E-20 162.4 11.9 117 62-178 657-791 (1522)
371 KOG0927 Predicted transporter 99.6 2.1E-15 4.6E-20 141.2 11.1 139 66-208 413-567 (614)
372 COG1160 Predicted GTPases [Gen 99.6 2.7E-15 5.7E-20 138.8 11.5 123 70-247 4-128 (444)
373 PF02421 FeoB_N: Ferrous iron 99.6 4.7E-16 1E-20 126.8 5.7 120 71-247 2-121 (156)
374 COG1245 Predicted ATPase, RNas 99.6 1.4E-15 3E-20 140.1 9.3 122 66-193 364-501 (591)
375 PLN03130 ABC transporter C fam 99.6 3.4E-15 7.3E-20 159.6 13.4 119 61-179 635-772 (1622)
376 TIGR00436 era GTP-binding prot 99.6 2.8E-15 6.2E-20 133.1 10.4 123 71-250 2-126 (270)
377 PLN03232 ABC transporter C fam 99.6 2.9E-15 6.4E-20 159.5 12.1 118 62-179 636-772 (1495)
378 PTZ00243 ABC transporter; Prov 99.6 4.7E-15 1E-19 158.2 13.1 115 63-179 680-814 (1560)
379 PRK00089 era GTPase Era; Revie 99.6 4E-15 8.7E-20 133.4 10.7 122 68-245 4-127 (292)
380 cd03271 ABC_UvrA_II The excisi 99.6 3.7E-14 8E-19 125.2 13.7 81 125-207 148-232 (261)
381 cd03273 ABC_SMC2_euk Eukaryoti 99.6 1.7E-14 3.7E-19 126.7 11.6 112 68-179 24-202 (251)
382 cd03279 ABC_sbcCD SbcCD and ot 99.6 1.3E-14 2.9E-19 124.4 10.0 138 68-207 27-193 (213)
383 COG4615 PvdE ABC-type sideroph 99.6 1.7E-14 3.7E-19 131.0 10.8 148 61-208 341-510 (546)
384 KOG0056 Heavy metal exporter H 99.6 1.3E-14 2.8E-19 134.7 10.1 121 59-179 554-706 (790)
385 cd03275 ABC_SMC1_euk Eukaryoti 99.6 3.6E-14 7.9E-19 124.4 12.2 137 70-206 23-218 (247)
386 COG0486 ThdF Predicted GTPase 99.5 1.6E-14 3.4E-19 134.0 9.3 133 62-250 210-343 (454)
387 COG4178 ABC-type uncharacteriz 99.5 3.9E-14 8.5E-19 136.1 11.7 140 63-205 413-570 (604)
388 KOG0066 eIF2-interacting prote 99.5 3.7E-14 8.1E-19 130.3 9.2 140 66-210 610-764 (807)
389 cd03240 ABC_Rad50 The catalyti 99.5 1.6E-13 3.5E-18 117.0 12.6 130 66-207 20-183 (204)
390 KOG0927 Predicted transporter 99.5 8.3E-14 1.8E-18 130.6 11.4 129 66-198 98-269 (614)
391 PRK15494 era GTPase Era; Provi 99.5 6.5E-14 1.4E-18 128.3 10.6 75 165-246 99-175 (339)
392 cd04163 Era Era subfamily. Er 99.5 7.9E-14 1.7E-18 112.3 9.7 74 165-245 50-125 (168)
393 KOG0054 Multidrug resistance-a 99.5 1.2E-13 2.7E-18 142.9 13.2 132 62-193 1159-1322(1381)
394 COG1245 Predicted ATPase, RNas 99.5 7E-14 1.5E-18 129.0 9.9 136 66-206 97-272 (591)
395 cd03274 ABC_SMC4_euk Eukaryoti 99.5 2.6E-14 5.5E-19 122.7 6.0 50 127-178 109-162 (212)
396 KOG0054 Multidrug resistance-a 99.5 1.5E-13 3.2E-18 142.3 11.8 116 62-177 540-673 (1381)
397 KOG0065 Pleiotropic drug resis 99.5 2.3E-14 4.9E-19 145.9 5.5 142 66-207 814-990 (1391)
398 cd01878 HflX HflX subfamily. 99.5 4.8E-13 1E-17 113.4 12.7 82 167-250 90-172 (204)
399 cd04164 trmE TrmE (MnmE, ThdF, 99.5 1.8E-13 4E-18 109.8 9.0 77 165-249 48-125 (157)
400 cd01898 Obg Obg subfamily. Th 99.5 3.7E-13 8E-18 110.0 10.9 82 167-250 49-133 (170)
401 COG1084 Predicted GTPase [Gene 99.5 5.8E-13 1.3E-17 118.6 12.6 134 67-255 166-304 (346)
402 COG5265 ATM1 ABC-type transpor 99.5 2E-13 4.4E-18 124.9 9.5 117 63-179 283-431 (497)
403 cd04171 SelB SelB subfamily. 99.5 4.6E-13 9.9E-18 108.5 10.7 69 165-246 50-119 (164)
404 cd03276 ABC_SMC6_euk Eukaryoti 99.5 1.5E-12 3.2E-17 110.7 13.8 104 70-179 22-145 (198)
405 cd01879 FeoB Ferrous iron tran 99.5 1.3E-13 2.8E-18 111.2 7.0 76 165-247 42-117 (158)
406 cd01894 EngA1 EngA1 subfamily. 99.5 3.8E-13 8.2E-18 108.0 9.5 78 165-249 44-123 (157)
407 cd04160 Arfrp1 Arfrp1 subfamil 99.5 4.6E-13 1E-17 109.3 10.1 71 165-246 49-122 (167)
408 PF01926 MMR_HSR1: 50S ribosom 99.4 2.4E-13 5.1E-18 105.2 7.5 70 165-240 46-116 (116)
409 PRK09866 hypothetical protein; 99.4 6.9E-13 1.5E-17 127.7 12.0 75 163-245 227-303 (741)
410 cd00881 GTP_translation_factor 99.4 7.7E-13 1.7E-17 109.6 10.7 70 165-247 61-130 (189)
411 cd04104 p47_IIGP_like p47 (47- 99.4 1E-12 2.2E-17 111.4 11.4 120 71-246 3-122 (197)
412 cd04145 M_R_Ras_like M-Ras/R-R 99.4 2.7E-13 5.9E-18 110.1 7.5 72 166-246 50-122 (164)
413 smart00173 RAS Ras subfamily o 99.4 2.6E-13 5.6E-18 110.4 6.7 72 167-246 49-120 (164)
414 cd03112 CobW_like The function 99.4 8.2E-13 1.8E-17 108.3 9.2 154 71-243 2-158 (158)
415 cd03280 ABC_MutS2 MutS2 homolo 99.4 7.2E-13 1.6E-17 112.6 9.1 91 65-179 23-122 (200)
416 TIGR03598 GTPase_YsxC ribosome 99.4 3.7E-12 8E-17 106.0 13.1 126 66-247 15-145 (179)
417 COG1160 Predicted GTPases [Gen 99.4 2.7E-13 5.9E-18 125.5 6.8 125 68-246 177-304 (444)
418 cd04136 Rap_like Rap-like subf 99.4 3E-13 6.4E-18 109.7 6.3 69 167-247 50-122 (163)
419 TIGR03156 GTP_HflX GTP-binding 99.4 1.4E-12 3E-17 120.0 11.5 131 68-249 188-319 (351)
420 COG1129 MglA ABC-type sugar tr 99.4 3.2E-12 7E-17 120.8 14.0 143 59-202 275-456 (500)
421 TIGR00450 mnmE_trmE_thdF tRNA 99.4 8.1E-13 1.8E-17 124.9 10.0 126 65-246 199-325 (442)
422 TIGR03594 GTPase_EngA ribosome 99.4 1.1E-12 2.4E-17 123.6 10.8 76 165-247 46-123 (429)
423 cd01881 Obg_like The Obg-like 99.4 1.8E-12 3.9E-17 106.3 10.6 86 165-252 43-141 (176)
424 cd01895 EngA2 EngA2 subfamily. 99.4 2.6E-12 5.6E-17 104.5 11.5 77 165-246 49-128 (174)
425 cd04155 Arl3 Arl3 subfamily. 99.4 2.5E-12 5.4E-17 105.6 11.4 75 165-247 57-131 (173)
426 cd01864 Rab19 Rab19 subfamily. 99.4 5.2E-13 1.1E-17 109.1 7.2 72 167-247 53-124 (165)
427 COG4138 BtuD ABC-type cobalami 99.4 3.9E-13 8.5E-18 110.3 6.3 144 66-212 22-197 (248)
428 cd01886 EF-G Elongation factor 99.4 1.9E-12 4.1E-17 115.1 11.2 69 165-246 63-131 (270)
429 cd04140 ARHI_like ARHI subfami 99.4 3.4E-13 7.3E-18 110.4 5.5 73 166-247 49-124 (165)
430 PRK12298 obgE GTPase CgtA; Rev 99.4 4.1E-12 8.8E-17 118.4 13.2 124 71-249 161-293 (390)
431 cd04119 RJL RJL (RabJ-Like) su 99.4 4.7E-13 1E-17 108.7 6.1 25 71-95 2-26 (168)
432 cd04159 Arl10_like Arl10-like 99.4 1.6E-12 3.6E-17 104.0 8.7 71 166-247 44-117 (159)
433 cd04115 Rab33B_Rab33A Rab33B/R 99.4 9.3E-13 2E-17 108.4 7.2 72 166-248 51-126 (170)
434 cd04165 GTPBP1_like GTPBP1-lik 99.4 6.9E-12 1.5E-16 108.5 13.0 75 165-250 83-157 (224)
435 cd00157 Rho Rho (Ras homology) 99.4 9.1E-13 2E-17 107.7 7.1 70 167-247 49-120 (171)
436 cd04127 Rab27A Rab27a subfamil 99.4 2.3E-12 5E-17 106.6 9.5 69 166-246 63-135 (180)
437 cd01887 IF2_eIF5B IF2/eIF5B (i 99.4 2.9E-12 6.3E-17 104.4 10.0 69 165-246 49-117 (168)
438 smart00053 DYNc Dynamin, GTPas 99.4 9.7E-12 2.1E-16 108.4 13.7 78 165-247 124-208 (240)
439 PRK00093 GTP-binding protein D 99.4 3.4E-12 7.3E-17 120.6 11.5 74 165-245 48-123 (435)
440 PRK05291 trmE tRNA modificatio 99.4 1.2E-12 2.5E-17 124.3 8.2 125 66-247 212-337 (449)
441 KOG2743 Cobalamin synthesis pr 99.4 5E-12 1.1E-16 111.2 11.4 175 66-254 54-234 (391)
442 cd04175 Rap1 Rap1 subgroup. T 99.4 4.9E-13 1.1E-17 109.0 4.8 72 166-246 49-121 (164)
443 cd04137 RheB Rheb (Ras Homolog 99.4 8E-13 1.7E-17 109.5 6.1 72 166-246 49-121 (180)
444 cd04112 Rab26 Rab26 subfamily. 99.4 1.1E-12 2.3E-17 110.3 7.0 71 167-246 51-121 (191)
445 PRK12299 obgE GTPase CgtA; Rev 99.4 5.5E-12 1.2E-16 115.3 12.1 78 165-248 205-288 (335)
446 cd04138 H_N_K_Ras_like H-Ras/N 99.4 6.4E-13 1.4E-17 107.3 5.4 23 71-93 3-25 (162)
447 cd04139 RalA_RalB RalA/RalB su 99.4 1E-12 2.2E-17 106.4 6.6 69 166-245 48-119 (164)
448 cd01897 NOG NOG1 is a nucleola 99.4 6.1E-12 1.3E-16 102.7 11.2 82 165-250 46-132 (168)
449 PF00009 GTP_EFTU: Elongation 99.4 9.9E-13 2.1E-17 110.4 6.6 69 165-246 69-137 (188)
450 TIGR02528 EutP ethanolamine ut 99.4 2.9E-12 6.3E-17 102.1 8.8 65 169-245 38-102 (142)
451 PRK03003 GTP-binding protein D 99.4 3.6E-12 7.8E-17 121.7 10.9 125 68-246 210-337 (472)
452 PRK00093 GTP-binding protein D 99.4 3.1E-12 6.7E-17 120.9 10.3 127 68-248 172-301 (435)
453 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.4 8.3E-13 1.8E-17 109.3 5.6 70 167-247 51-123 (172)
454 cd04162 Arl9_Arfrp2_like Arl9/ 99.4 6.5E-12 1.4E-16 103.1 10.8 72 165-247 43-115 (164)
455 cd01861 Rab6 Rab6 subfamily. 99.4 6.6E-12 1.4E-16 101.7 10.7 68 167-246 50-120 (161)
456 KOG0084 GTPase Rab1/YPT1, smal 99.4 1E-12 2.2E-17 109.1 5.9 140 67-263 7-146 (205)
457 cd00879 Sar1 Sar1 subfamily. 99.4 7E-12 1.5E-16 104.8 11.1 70 165-245 62-134 (190)
458 PRK11058 GTPase HflX; Provisio 99.4 4.4E-12 9.5E-17 119.4 10.8 78 167-246 246-324 (426)
459 TIGR02729 Obg_CgtA Obg family 99.3 7.5E-12 1.6E-16 114.2 11.9 82 166-249 205-291 (329)
460 PRK03003 GTP-binding protein D 99.3 5.1E-12 1.1E-16 120.7 11.2 75 165-246 85-161 (472)
461 cd00880 Era_like Era (E. coli 99.3 5.4E-12 1.2E-16 100.2 9.6 80 165-251 44-124 (163)
462 cd04176 Rap2 Rap2 subgroup. T 99.3 1.4E-12 3E-17 106.1 6.2 68 167-246 50-121 (163)
463 cd01884 EF_Tu EF-Tu subfamily. 99.3 4E-12 8.6E-17 107.8 9.2 70 165-247 64-134 (195)
464 cd01865 Rab3 Rab3 subfamily. 99.3 2.3E-12 5.1E-17 105.4 7.5 70 166-247 50-122 (165)
465 cd04106 Rab23_lke Rab23-like s 99.3 2.6E-12 5.7E-17 104.2 7.7 70 166-247 51-122 (162)
466 cd01867 Rab8_Rab10_Rab13_like 99.3 6E-12 1.3E-16 103.1 9.9 68 167-246 53-123 (167)
467 TIGR03594 GTPase_EngA ribosome 99.3 5.3E-12 1.1E-16 119.0 10.8 75 165-244 219-296 (429)
468 smart00174 RHO Rho (Ras homolo 99.3 2.3E-12 4.9E-17 106.0 7.3 68 167-245 47-116 (174)
469 cd01888 eIF2_gamma eIF2-gamma 99.3 1.5E-11 3.1E-16 104.8 12.4 70 166-248 83-154 (203)
470 cd04161 Arl2l1_Arl13_like Arl2 99.3 5E-12 1.1E-16 104.0 9.1 71 165-247 42-116 (167)
471 cd04132 Rho4_like Rho4-like su 99.3 7E-12 1.5E-16 104.5 10.1 68 167-245 50-119 (187)
472 smart00175 RAB Rab subfamily o 99.3 2E-12 4.4E-17 104.8 6.6 68 167-246 50-120 (164)
473 cd04114 Rab30 Rab30 subfamily. 99.3 7.3E-12 1.6E-16 102.3 10.0 73 167-248 57-129 (169)
474 cd04142 RRP22 RRP22 subfamily. 99.3 4.3E-12 9.2E-17 107.7 8.6 75 167-246 50-131 (198)
475 cd04157 Arl6 Arl6 subfamily. 99.3 5.3E-12 1.1E-16 102.2 8.7 74 165-246 44-119 (162)
476 cd04107 Rab32_Rab38 Rab38/Rab3 99.3 5.3E-12 1.2E-16 106.9 9.1 71 167-245 51-124 (201)
477 PRK12296 obgE GTPase CgtA; Rev 99.3 1E-11 2.2E-16 118.3 11.8 129 69-249 159-302 (500)
478 cd00154 Rab Rab family. Rab G 99.3 3.3E-12 7.1E-17 102.1 7.3 67 166-244 49-118 (159)
479 cd04154 Arl2 Arl2 subfamily. 99.3 1.2E-11 2.5E-16 102.1 10.7 74 165-246 57-130 (173)
480 PRK09435 membrane ATPase/prote 99.3 1.5E-11 3.2E-16 112.0 12.2 152 67-247 54-210 (332)
481 cd01890 LepA LepA subfamily. 99.3 2.3E-11 5E-16 100.4 12.4 69 165-246 66-134 (179)
482 PRK04213 GTP-binding protein; 99.3 1.5E-11 3.2E-16 104.0 11.4 81 167-247 53-146 (201)
483 COG0523 Putative GTPases (G3E 99.3 1E-11 2.2E-16 112.6 11.1 161 70-251 2-165 (323)
484 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.3 4.6E-12 9.9E-17 103.5 7.9 69 167-247 52-123 (166)
485 cd04122 Rab14 Rab14 subfamily. 99.3 3.8E-12 8.2E-17 104.2 7.3 69 167-247 52-123 (166)
486 cd01876 YihA_EngB The YihA (En 99.3 1.4E-11 3.1E-16 99.4 10.6 78 166-248 45-127 (170)
487 cd01866 Rab2 Rab2 subfamily. 99.3 5.3E-12 1.2E-16 103.6 8.0 68 167-246 54-124 (168)
488 cd04105 SR_beta Signal recogni 99.3 1.7E-11 3.7E-16 104.4 11.4 75 165-246 47-124 (203)
489 KOG0062 ATPase component of AB 99.3 7.1E-12 1.5E-16 117.2 9.6 138 66-208 387-540 (582)
490 cd04113 Rab4 Rab4 subfamily. 99.3 5.1E-12 1.1E-16 102.6 7.6 72 166-246 49-120 (161)
491 cd04168 TetM_like Tet(M)-like 99.3 1.4E-11 3E-16 107.5 10.9 69 165-246 63-131 (237)
492 PTZ00369 Ras-like protein; Pro 99.3 3E-12 6.4E-17 107.5 6.4 71 167-246 54-125 (189)
493 cd04101 RabL4 RabL4 (Rab-like4 99.3 2.6E-11 5.6E-16 98.6 11.5 70 166-247 52-123 (164)
494 cd04151 Arl1 Arl1 subfamily. 99.3 1.1E-11 2.3E-16 100.6 9.1 71 165-246 42-115 (158)
495 smart00178 SAR Sar1p-like memb 99.3 1.7E-11 3.7E-16 102.6 10.5 69 165-244 60-131 (184)
496 cd04148 RGK RGK subfamily. Th 99.3 4.4E-12 9.5E-17 109.4 7.1 70 166-248 50-123 (221)
497 cd04156 ARLTS1 ARLTS1 subfamil 99.3 2E-11 4.3E-16 98.9 10.5 69 166-245 44-115 (160)
498 cd01868 Rab11_like Rab11-like. 99.3 4.6E-12 9.9E-17 103.3 6.8 68 167-246 53-123 (165)
499 cd00876 Ras Ras family. The R 99.3 2.9E-12 6.3E-17 103.2 5.5 71 167-246 48-119 (160)
500 cd01862 Rab7 Rab7 subfamily. 99.3 3.5E-12 7.7E-17 104.3 6.0 23 71-93 2-24 (172)
No 1
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.9e-28 Score=210.47 Aligned_cols=148 Identities=15% Similarity=0.170 Sum_probs=122.0
Q ss_pred CcccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCC---------------CCCcccccccch----
Q 024413 60 SSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA---------------VMTLPFAANIDI---- 120 (268)
Q Consensus 60 ~~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~---------------~~~~~~~~~~~~---- 120 (268)
......+.+|++++|+||+|||||||+|.|+|+..|++|.|.+.|..+. .++.+..+|+..
T Consensus 20 ~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~ 99 (248)
T COG1116 20 EDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLEL 99 (248)
T ss_pred ccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhheehhhc
Confidence 3445568999999999999999999999999999999999999887541 122333344432
Q ss_pred ------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCC-CCcchhhhhhHHHHHHHHH
Q 024413 121 ------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP-GQIEIFTWSASGAIITEAF 193 (268)
Q Consensus 121 ------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDeP-G~~~~~~~~~~~~~i~~~~ 193 (268)
....++.++++.+||....+.. |++||||||||++||||++.+|+++|+||| |..|..++..+...+.+.+
T Consensus 100 ~~~~~~e~~~~a~~~L~~VgL~~~~~~~--P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw 177 (248)
T COG1116 100 RGKSKAEARERAKELLELVGLAGFEDKY--PHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLW 177 (248)
T ss_pred cccchHhHHHHHHHHHHHcCCcchhhcC--ccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHH
Confidence 1234688899999999888877 999999999999999999999999999999 6678777888888888888
Q ss_pred hccCCcEEEEEEcCCC
Q 024413 194 ASTFPTVVTYVVDTPR 209 (268)
Q Consensus 194 ~~~~~d~vv~vvD~~~ 209 (268)
+.....++++.||..+
T Consensus 178 ~~~~~TvllVTHdi~E 193 (248)
T COG1116 178 EETRKTVLLVTHDVDE 193 (248)
T ss_pred HhhCCEEEEEeCCHHH
Confidence 8877788888888844
No 2
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.94 E-value=6.8e-27 Score=200.17 Aligned_cols=145 Identities=14% Similarity=0.118 Sum_probs=107.3
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC------------------------CCccccc
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV------------------------MTLPFAA 116 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~------------------------~~~~~~~ 116 (268)
.....+++|++++|+||+|||||||||+|.|+..|++|.+++.|.+... +.++..+
T Consensus 23 ~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~E 102 (226)
T COG1136 23 DVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLE 102 (226)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHH
Confidence 4445589999999999999999999999999999999999999976431 1233333
Q ss_pred ccch----------hhHHHHHHHHHHcCCCCCCC-cccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCC-cchhhhhh
Q 024413 117 NIDI----------RDTIRYKEVMKQFNLGPNGG-ILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQ-IEIFTWSA 184 (268)
Q Consensus 117 ~~~~----------~~~~~~~~~l~~~~l~~~~~-~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~-~~~~~~~~ 184 (268)
|+.+ .....+.++++.+||.+... .. |.+|||||||||+||||++.+|+++|.|||+- .|..+...
T Consensus 103 Nv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~--p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~ 180 (226)
T COG1136 103 NVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKK--PSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKE 180 (226)
T ss_pred HHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCC--chhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHH
Confidence 4332 12345677889999986655 44 99999999999999999999999999999965 44433333
Q ss_pred HHHHHHHHHhccCCcEEEEEEcC
Q 024413 185 SGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 185 ~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
....+.+..+.....+|++.||.
T Consensus 181 V~~ll~~~~~~~g~tii~VTHd~ 203 (226)
T COG1136 181 VLELLRELNKERGKTIIMVTHDP 203 (226)
T ss_pred HHHHHHHHHHhcCCEEEEEcCCH
Confidence 33333333333345777777776
No 3
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=5.8e-27 Score=203.43 Aligned_cols=148 Identities=14% Similarity=0.090 Sum_probs=115.4
Q ss_pred CCcccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccC-------CCCCcccccccc------------
Q 024413 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP-------AVMTLPFAANID------------ 119 (268)
Q Consensus 59 ~~~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~-------~~~~~~~~~~~~------------ 119 (268)
.......+++|++++|+||||||||||+++|+|+.+|.+|.|.+.+.+. ...++|+...++
T Consensus 20 l~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~ 99 (254)
T COG1121 20 LEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVL 99 (254)
T ss_pred eeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHH
Confidence 3444556899999999999999999999999999999999999988742 122333322221
Q ss_pred --------------hhhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhH
Q 024413 120 --------------IRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSAS 185 (268)
Q Consensus 120 --------------~~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~ 185 (268)
-.++..++++++.+++....+.. +.+|||||+||+-|||||+.+|++++||||...-+......
T Consensus 100 ~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~--i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~ 177 (254)
T COG1121 100 LGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQ--IGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKE 177 (254)
T ss_pred ccCcccccccccccHHHHHHHHHHHHHcCchhhhCCc--ccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHH
Confidence 12457899999999999777766 99999999999999999999999999999988644344555
Q ss_pred HHHHHHHHhccCCcEEEEEEcCC
Q 024413 186 GAIITEAFASTFPTVVTYVVDTP 208 (268)
Q Consensus 186 ~~~i~~~~~~~~~d~vv~vvD~~ 208 (268)
...+.+.++.+...+++..+|-.
T Consensus 178 i~~lL~~l~~eg~tIl~vtHDL~ 200 (254)
T COG1121 178 IYDLLKELRQEGKTVLMVTHDLG 200 (254)
T ss_pred HHHHHHHHHHCCCEEEEEeCCcH
Confidence 66666777666556666667763
No 4
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.94 E-value=1.3e-26 Score=199.94 Aligned_cols=188 Identities=72% Similarity=1.165 Sum_probs=178.4
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccch
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 145 (268)
.++..++.++|-.||||||++..|.+....+.-..|+.+.||.+.++|+..|+++||.+.+.++|+.++|+||+++..++
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsL 95 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSL 95 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhH
Confidence 67788999999999999999999999999988889999999999999999999999999999999999999999999999
Q ss_pred hhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHH
Q 024413 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (268)
Q Consensus 146 ~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~ 225 (268)
+.+..-..|-+.++.-.....+++|+|||||.+.++++..+..+.+.++.....+|+|++|..++..+..|+..++++..
T Consensus 96 NLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcS 175 (366)
T KOG1532|consen 96 NLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACS 175 (366)
T ss_pred HHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHH
Confidence 99999999999999988888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCceeeecCCCcCChhhhhhhh
Q 024413 226 ILYKTRLPLVLAFNKTDVAQHEFALEVQ 253 (268)
Q Consensus 226 ~l~~~~~p~ilV~NK~Dl~~~~~~~~~~ 253 (268)
.+.+...|.|+|+||+|+.+.+...+|.
T Consensus 176 ilyktklp~ivvfNK~Dv~d~~fa~eWm 203 (366)
T KOG1532|consen 176 ILYKTKLPFIVVFNKTDVSDSEFALEWM 203 (366)
T ss_pred HHHhccCCeEEEEecccccccHHHHHHH
Confidence 9999999999999999999887766553
No 5
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.94 E-value=1.6e-26 Score=194.15 Aligned_cols=144 Identities=13% Similarity=0.112 Sum_probs=106.1
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC---------------CCc------ccccccc
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV---------------MTL------PFAANID 119 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~---------------~~~------~~~~~~~ 119 (268)
.....+.+|++++|+||+|||||||++||.++..+++|.|+++|.+... +.+ +..+|+.
T Consensus 20 gi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~ 99 (240)
T COG1126 20 GISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVT 99 (240)
T ss_pred CcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHH
Confidence 3344589999999999999999999999999999999999999965431 112 2222222
Q ss_pred h-----------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCc-chhhhhhHHH
Q 024413 120 I-----------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQI-EIFTWSASGA 187 (268)
Q Consensus 120 ~-----------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~-~~~~~~~~~~ 187 (268)
. ..+..+.++++.+||....+.. |.+|||||+||++|||||+.+|+++|+|||+-. ||.-.. +.-
T Consensus 100 lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~y--P~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~-EVL 176 (240)
T COG1126 100 LAPVKVKKLSKAEAREKALELLEKVGLADKADAY--PAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVG-EVL 176 (240)
T ss_pred hhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhC--ccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHH-HHH
Confidence 1 1234567799999999887766 999999999999999999999999999999875 542211 222
Q ss_pred HHHHHHhccCCcEEEEEEcC
Q 024413 188 IITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 188 ~i~~~~~~~~~d~vv~vvD~ 207 (268)
.+.+.++...-..+++.++.
T Consensus 177 ~vm~~LA~eGmTMivVTHEM 196 (240)
T COG1126 177 DVMKDLAEEGMTMIIVTHEM 196 (240)
T ss_pred HHHHHHHHcCCeEEEEechh
Confidence 33333444444556655555
No 6
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.94 E-value=8.3e-27 Score=199.97 Aligned_cols=154 Identities=18% Similarity=0.119 Sum_probs=119.4
Q ss_pred CCcccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC--------------------CCccccccc
Q 024413 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV--------------------MTLPFAANI 118 (268)
Q Consensus 59 ~~~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~--------------------~~~~~~~~~ 118 (268)
.......+++|++++++||+||||||+|++|.++..|++|.|+++|.+... +.++..+|+
T Consensus 17 v~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNI 96 (309)
T COG1125 17 VDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENI 96 (309)
T ss_pred eeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHH
Confidence 344555699999999999999999999999999999999999999987542 122333333
Q ss_pred ch------h----hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCC-CCcchhhhhhHHH
Q 024413 119 DI------R----DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP-GQIEIFTWSASGA 187 (268)
Q Consensus 119 ~~------~----~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDeP-G~~~~~~~~~~~~ 187 (268)
.+ | -..+++|+++.++|++......+|++|||||+||+.+|||++.+|+++|+||| |..+|-++.....
T Consensus 97 a~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~ 176 (309)
T COG1125 97 ATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQE 176 (309)
T ss_pred HhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHH
Confidence 21 2 24568899999999986555556999999999999999999999999999999 7788866665555
Q ss_pred HHHHHHhccCCcEEEEEEcCCCcCC
Q 024413 188 IITEAFASTFPTVVTYVVDTPRSAN 212 (268)
Q Consensus 188 ~i~~~~~~~~~d~vv~vvD~~~~~~ 212 (268)
.+.+..+.....+|++.+|..+.+.
T Consensus 177 e~~~lq~~l~kTivfVTHDidEA~k 201 (309)
T COG1125 177 EIKELQKELGKTIVFVTHDIDEALK 201 (309)
T ss_pred HHHHHHHHhCCEEEEEecCHHHHHh
Confidence 5555444455677777788755433
No 7
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.93 E-value=1.4e-25 Score=195.67 Aligned_cols=148 Identities=16% Similarity=0.085 Sum_probs=116.2
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC----------CCccccc----cc--------
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV----------MTLPFAA----NI-------- 118 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~----------~~~~~~~----~~-------- 118 (268)
...+.+++|++++|+|||||||||||++|+|+.+|.+|.|+++|.+... ..+|+.. .+
T Consensus 20 ~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~ 99 (258)
T COG1120 20 DLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLL 99 (258)
T ss_pred cceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhh
Confidence 4455689999999999999999999999999999999999999986431 1111111 00
Q ss_pred ------------chhhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHH
Q 024413 119 ------------DIRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASG 186 (268)
Q Consensus 119 ------------~~~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~ 186 (268)
.-.|...+.+.++.+++....... +.+||||||||+.||+|++++|+++|+|||+-..+..+....
T Consensus 100 GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~--~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~ev 177 (258)
T COG1120 100 GRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRP--VDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEV 177 (258)
T ss_pred cCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCc--ccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHH
Confidence 113455688889999999877766 899999999999999999999999999999987665666666
Q ss_pred HHHHHHHhc-cCCcEEEEEEcCCCc
Q 024413 187 AIITEAFAS-TFPTVVTYVVDTPRS 210 (268)
Q Consensus 187 ~~i~~~~~~-~~~d~vv~vvD~~~~ 210 (268)
..+.+.+.. ....+|+.+||....
T Consensus 178 l~ll~~l~~~~~~tvv~vlHDlN~A 202 (258)
T COG1120 178 LELLRDLNREKGLTVVMVLHDLNLA 202 (258)
T ss_pred HHHHHHHHHhcCCEEEEEecCHHHH
Confidence 677777664 456788888887443
No 8
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.92 E-value=3.1e-25 Score=201.27 Aligned_cols=152 Identities=14% Similarity=0.082 Sum_probs=112.9
Q ss_pred CcccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC------------C------Ccccccccch-
Q 024413 60 SSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV------------M------TLPFAANIDI- 120 (268)
Q Consensus 60 ~~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~------------~------~~~~~~~~~~- 120 (268)
......+++|++++++|||||||||||++|+|+..|++|.|++.|.+... + .++..+|+..
T Consensus 22 ~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafG 101 (352)
T COG3842 22 DDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFG 101 (352)
T ss_pred ecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhh
Confidence 34455689999999999999999999999999999999999999987542 1 2222233211
Q ss_pred -------h---hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCC-cchhhhhhHHHHH
Q 024413 121 -------R---DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQ-IEIFTWSASGAII 189 (268)
Q Consensus 121 -------~---~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~-~~~~~~~~~~~~i 189 (268)
. ...++.++++.++|....... |.+|||||+||+++||||+.+|+++|+|||-- .|..-+..+...+
T Consensus 102 Lk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~--p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~El 179 (352)
T COG3842 102 LKVRKKLKKAEIKARVEEALELVGLEGFADRK--PHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKEL 179 (352)
T ss_pred hhhcCCCCHHHHHHHHHHHHHHcCchhhhhhC--hhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHH
Confidence 1 124788999999999988777 99999999999999999999999999999954 4443334444444
Q ss_pred HHHHhccCCcEEEEEEcCCCcCCc
Q 024413 190 TEAFASTFPTVVTYVVDTPRSANP 213 (268)
Q Consensus 190 ~~~~~~~~~d~vv~vvD~~~~~~~ 213 (268)
.+..+......|.+.+|-.+.+..
T Consensus 180 k~lq~~~giT~i~VTHDqeEAl~m 203 (352)
T COG3842 180 KELQRELGITFVYVTHDQEEALAM 203 (352)
T ss_pred HHHHHhcCCeEEEEECCHHHHhhh
Confidence 444444445666666676444433
No 9
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.92 E-value=1.1e-24 Score=196.81 Aligned_cols=129 Identities=13% Similarity=0.082 Sum_probs=101.5
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC------------CCcccccccch--------
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV------------MTLPFAANIDI-------- 120 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~------------~~~~~~~~~~~-------- 120 (268)
.....+++|++++|+||||||||||||+|+|+..|++|.|++.|.+... ++...+++++.
T Consensus 21 ~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~L 100 (338)
T COG3839 21 DVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGL 100 (338)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhh
Confidence 3445589999999999999999999999999999999999999987532 22222333322
Q ss_pred --------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCC-cchhhhhhHHHHHHH
Q 024413 121 --------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQ-IEIFTWSASGAIITE 191 (268)
Q Consensus 121 --------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~-~~~~~~~~~~~~i~~ 191 (268)
....++.++.+.++|......+ |.+|||||+||+++|||++.+|+++|+|||-. .|...+......+.+
T Consensus 101 k~~~~~k~ei~~rV~eva~~L~l~~lL~r~--P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~ 178 (338)
T COG3839 101 KLRGVPKAEIDKRVKEVAKLLGLEHLLNRK--PLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKK 178 (338)
T ss_pred hhCCCchHHHHHHHHHHHHHcCChhHHhcC--cccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHH
Confidence 1245788999999999887777 99999999999999999999999999999977 444333334444443
No 10
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=2.5e-24 Score=189.41 Aligned_cols=121 Identities=14% Similarity=0.133 Sum_probs=97.3
Q ss_pred CCcccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC-----------------------Ccccc
Q 024413 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM-----------------------TLPFA 115 (268)
Q Consensus 59 ~~~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~-----------------------~~~~~ 115 (268)
.......+++|++++|+|++|||||||++++.++..|++|.+.++|.+...- ..+..
T Consensus 22 l~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~ 101 (339)
T COG1135 22 LDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVF 101 (339)
T ss_pred eccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHH
Confidence 3345556999999999999999999999999999999999999999765321 11222
Q ss_pred cccch----------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCc-chhh
Q 024413 116 ANIDI----------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQI-EIFT 181 (268)
Q Consensus 116 ~~~~~----------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~-~~~~ 181 (268)
+|+.. .-..++.++++.+||....+.. |.+|||||||||+|||||+.+|+++|.|||+-+ ||.+
T Consensus 102 ~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~y--P~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~T 176 (339)
T COG1135 102 ENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRY--PAQLSGGQKQRVAIARALANNPKILLCDEATSALDPET 176 (339)
T ss_pred hhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccC--chhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHH
Confidence 22211 1245788999999999766655 999999999999999999999999999999864 5533
No 11
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.91 E-value=3.3e-24 Score=182.80 Aligned_cols=152 Identities=13% Similarity=0.077 Sum_probs=112.2
Q ss_pred CCcccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCC-----------------------CCCcccc
Q 024413 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-----------------------VMTLPFA 115 (268)
Q Consensus 59 ~~~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~-----------------------~~~~~~~ 115 (268)
.......+++|++++|+|++|+|||||+++|.|+.+|++|+|.++|.+.. ++.++..
T Consensus 24 ld~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~ 103 (263)
T COG1127 24 LDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVF 103 (263)
T ss_pred ecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchh
Confidence 33445569999999999999999999999999999999999999998753 1234444
Q ss_pred cccch--h-----h----HHHHHHHHHHcCCCCC-CCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCc-chhhh
Q 024413 116 ANIDI--R-----D----TIRYKEVMKQFNLGPN-GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQI-EIFTW 182 (268)
Q Consensus 116 ~~~~~--~-----~----~~~~~~~l~~~~l~~~-~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~-~~~~~ 182 (268)
+|+.. + . +..+..-++.+||.+. .... |++|||||++|+++|||++.+|+++|+|||+.. ||.+
T Consensus 104 eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~--PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~- 180 (263)
T COG1127 104 ENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLY--PSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPIS- 180 (263)
T ss_pred HhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhC--chhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcch-
Confidence 44432 1 1 1224446788999877 4444 999999999999999999999999999999874 4433
Q ss_pred hhHHHHHHHHHhcc-CCcEEEEEEcCCCcCCc
Q 024413 183 SASGAIITEAFAST-FPTVVTYVVDTPRSANP 213 (268)
Q Consensus 183 ~~~~~~i~~~~~~~-~~d~vv~vvD~~~~~~~ 213 (268)
......+++.++.. ...++++.||.....+.
T Consensus 181 a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i 212 (263)
T COG1127 181 AGVIDELIRELNDALGLTVIMVTHDLDSLLTI 212 (263)
T ss_pred HHHHHHHHHHHHHhhCCEEEEEECChHHHHhh
Confidence 23344555555544 45777777887544333
No 12
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=4.1e-24 Score=187.76 Aligned_cols=145 Identities=15% Similarity=0.119 Sum_probs=111.0
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecc---cCCC------------------CCcccccccc
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNL---DPAV------------------MTLPFAANID 119 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~---~~~~------------------~~~~~~~~~~ 119 (268)
.....++.|+.++++|||||||||||++|+|++.|+.|.|.++|. |... ..++...|+.
T Consensus 20 di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIA 99 (345)
T COG1118 20 DISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIA 99 (345)
T ss_pred cceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhcccchHHhhhh
Confidence 344458899999999999999999999999999999999999998 4321 1122222221
Q ss_pred h------------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCC-CCcchhhhhhHH
Q 024413 120 I------------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP-GQIEIFTWSASG 186 (268)
Q Consensus 120 ~------------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDeP-G~~~~~~~~~~~ 186 (268)
. ..+.++.++++.+.|+.-+... |.+|||||+||+++|||++.+|+++||||| |..|..-+....
T Consensus 100 FGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ry--P~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr 177 (345)
T COG1118 100 FGLKVRKERPSEAEIRARVEELLRLVQLEGLADRY--PAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELR 177 (345)
T ss_pred hcccccccCCChhhHHHHHHHHHHHhcccchhhcC--chhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHH
Confidence 1 2345788899999999877766 999999999999999999999999999999 455554455566
Q ss_pred HHHHHHHhccCCcEEEEEEcC
Q 024413 187 AIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 187 ~~i~~~~~~~~~d~vv~vvD~ 207 (268)
.++.+.........|++.+|.
T Consensus 178 ~wLr~~~~~~~~ttvfVTHD~ 198 (345)
T COG1118 178 RWLRKLHDRLGVTTVFVTHDQ 198 (345)
T ss_pred HHHHHHHHhhCceEEEEeCCH
Confidence 666666555445566666665
No 13
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.91 E-value=1.2e-23 Score=173.56 Aligned_cols=145 Identities=15% Similarity=0.128 Sum_probs=112.8
Q ss_pred CcccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC-----------------------Cccccc
Q 024413 60 SSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM-----------------------TLPFAA 116 (268)
Q Consensus 60 ~~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~-----------------------~~~~~~ 116 (268)
....+.+++|+.+-|+||+|||||||++.|++..+|+.|.+.+++.+...- ..+.++
T Consensus 19 ~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvye 98 (223)
T COG2884 19 RDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYE 98 (223)
T ss_pred hCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhh
Confidence 344556899999999999999999999999999999999999999885421 122223
Q ss_pred ccch----------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCC-CcchhhhhhH
Q 024413 117 NIDI----------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG-QIEIFTWSAS 185 (268)
Q Consensus 117 ~~~~----------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG-~~~~~~~~~~ 185 (268)
|+.. .-..++.++++++||....... |.+||||++||++||||++.+|+++|.|||+ -.||. .+..
T Consensus 99 NVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~l--P~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~-~s~~ 175 (223)
T COG2884 99 NVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARAL--PSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPD-LSWE 175 (223)
T ss_pred hhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcC--ccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChH-HHHH
Confidence 3221 1245688899999999887777 9999999999999999999999999999995 45653 2334
Q ss_pred HHHHHHHHhccCCcEEEEEEcC
Q 024413 186 GAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 186 ~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
...+.+.+......+++..+|.
T Consensus 176 im~lfeeinr~GtTVl~ATHd~ 197 (223)
T COG2884 176 IMRLFEEINRLGTTVLMATHDL 197 (223)
T ss_pred HHHHHHHHhhcCcEEEEEeccH
Confidence 4556666656666777777776
No 14
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.91 E-value=2e-24 Score=188.21 Aligned_cols=172 Identities=41% Similarity=0.641 Sum_probs=128.5
Q ss_pred EEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccchhhhcHHHH
Q 024413 74 VVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFD 153 (268)
Q Consensus 74 iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~ 153 (268)
|+||+||||||+++.+..+....+..+++.+.||....+++...+++++...++++|+.++|+||+....++..+...-.
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~~~~~y~~~iDird~i~~~evm~~~~LGPNGal~~~me~l~~~~d 80 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAVENLPYPPDIDIRDLISVEEVMEEYGLGPNGALIYCMEYLEENID 80 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-S--SS--SEEGGGT--HHHHHTT-T--HHHHHHHHHHHHGGGHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchHhcccccCchHHHHhhhhhhhhhhhcCcCCcHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999998887888777775
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCC
Q 024413 154 EVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLP 233 (268)
Q Consensus 154 qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p 233 (268)
+...-.... +.+++|+|||||.|.+.+......+.+.+.....-++|+++|+....++.++....+.++..+...+.|
T Consensus 81 ~l~~~i~~~--~~~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP 158 (238)
T PF03029_consen 81 WLDEEIEKY--EDDYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELP 158 (238)
T ss_dssp HHHHHHHHH--H-SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHhhc--CCcEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCC
Confidence 554444444 449999999999999999988888988887766789999999998888888888888777777788999
Q ss_pred ceeeecCCCcCChh
Q 024413 234 LVLAFNKTDVAQHE 247 (268)
Q Consensus 234 ~ilV~NK~Dl~~~~ 247 (268)
.|.|+||+|++++.
T Consensus 159 ~vnvlsK~Dl~~~~ 172 (238)
T PF03029_consen 159 HVNVLSKIDLLSKY 172 (238)
T ss_dssp EEEEE--GGGS-HH
T ss_pred EEEeeeccCcccch
Confidence 99999999999843
No 15
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.91 E-value=1.8e-23 Score=187.66 Aligned_cols=132 Identities=15% Similarity=0.157 Sum_probs=100.0
Q ss_pred CCcccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC-------------------Ccccccccc
Q 024413 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM-------------------TLPFAANID 119 (268)
Q Consensus 59 ~~~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~-------------------~~~~~~~~~ 119 (268)
.......+++|++++++||||||||||+++|+|+..|++|.|.+.|.++... .++..+++.
T Consensus 21 l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~ 100 (293)
T COG1131 21 LDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLE 100 (293)
T ss_pred EeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHH
Confidence 3345556899999999999999999999999999999999999999765321 111222221
Q ss_pred h----------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCc-chhhhhhHHHH
Q 024413 120 I----------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQI-EIFTWSASGAI 188 (268)
Q Consensus 120 ~----------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~-~~~~~~~~~~~ 188 (268)
. .+..+++++++.++|....... ++.||+|||||++||+||+.+|+++|||||+.. |+.........
T Consensus 101 ~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~--~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~ 178 (293)
T COG1131 101 FFARLYGLSKEEAEERIEELLELFGLEDKANKK--VRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWEL 178 (293)
T ss_pred HHHHHhCCChhHHHHHHHHHHHHcCCchhhCcc--hhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHH
Confidence 1 1235788999999999854333 899999999999999999999999999999874 54443333333
Q ss_pred HHHH
Q 024413 189 ITEA 192 (268)
Q Consensus 189 i~~~ 192 (268)
+.+.
T Consensus 179 l~~l 182 (293)
T COG1131 179 LREL 182 (293)
T ss_pred HHHH
Confidence 3333
No 16
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.90 E-value=1.2e-23 Score=172.52 Aligned_cols=138 Identities=14% Similarity=0.125 Sum_probs=104.1
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC------------------Ccccccccc--------
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM------------------TLPFAANID-------- 119 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~------------------~~~~~~~~~-------- 119 (268)
+..|++++|+||+|||||||+|.++|+..|.+|.+.++|.+.... .++..+|+.
T Consensus 22 v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~Lk 101 (231)
T COG3840 22 VPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLK 101 (231)
T ss_pred ecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCcccc
Confidence 789999999999999999999999999999999999999886422 122222221
Q ss_pred --hhhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCc-chhhhhhHHHHHHHHHhcc
Q 024413 120 --IRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQI-EIFTWSASGAIITEAFAST 196 (268)
Q Consensus 120 --~~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~-~~~~~~~~~~~i~~~~~~~ 196 (268)
..++.+++.++..+||....... |.+||||||||+++||++..+.+|+++|||... +|.-+..+...+...-...
T Consensus 102 L~a~~r~~v~~aa~~vGl~~~~~RL--P~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~ 179 (231)
T COG3840 102 LNAEQREKVEAAAAQVGLAGFLKRL--PGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDER 179 (231)
T ss_pred cCHHHHHHHHHHHHHhChhhHhhhC--ccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhh
Confidence 13567788899999999888777 999999999999999999999999999999764 5533333333333333333
Q ss_pred CCcEEEEEE
Q 024413 197 FPTVVTYVV 205 (268)
Q Consensus 197 ~~d~vv~vv 205 (268)
.-.++++.+
T Consensus 180 ~~TllmVTH 188 (231)
T COG3840 180 KMTLLMVTH 188 (231)
T ss_pred CCEEEEEeC
Confidence 334444433
No 17
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=1.1e-23 Score=179.11 Aligned_cols=147 Identities=10% Similarity=0.093 Sum_probs=110.3
Q ss_pred CcccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC-----------------------Cccccc
Q 024413 60 SSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM-----------------------TLPFAA 116 (268)
Q Consensus 60 ~~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~-----------------------~~~~~~ 116 (268)
......+++|++++|+|++||||||||++|.|+..++.|.+.+.+.++... .....+
T Consensus 21 ~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~ 100 (258)
T COG3638 21 KDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLE 100 (258)
T ss_pred eeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCCcccccHHHH
Confidence 344556899999999999999999999999999999999999999764321 111111
Q ss_pred ccc------------------hhhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCC-c
Q 024413 117 NID------------------IRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQ-I 177 (268)
Q Consensus 117 ~~~------------------~~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~-~ 177 (268)
|+- -.++..+-+.++.+|+.+....+ ..+|||||+|||+|||||+++|+++|.|||.. .
T Consensus 101 NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qr--a~~LSGGQQQRVaIARaL~Q~pkiILADEPvasL 178 (258)
T COG3638 101 NVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQR--ASTLSGGQQQRVAIARALVQQPKIILADEPVASL 178 (258)
T ss_pred HHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHH--hccCCcchhHHHHHHHHHhcCCCEEecCCccccc
Confidence 110 13455677789999999887777 89999999999999999999999999999977 4
Q ss_pred chhhhhhHHHHHHHHHhccCCcEEEEEEcCC
Q 024413 178 EIFTWSASGAIITEAFASTFPTVVTYVVDTP 208 (268)
Q Consensus 178 ~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~ 208 (268)
||.+....+..+.+.-+.....+|+.+|+..
T Consensus 179 Dp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vd 209 (258)
T COG3638 179 DPESAKKVMDILKDINQEDGITVIVNLHQVD 209 (258)
T ss_pred ChhhHHHHHHHHHHHHHHcCCEEEEEechHH
Confidence 5544344444444443445567777777763
No 18
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=2.1e-23 Score=172.88 Aligned_cols=145 Identities=13% Similarity=0.135 Sum_probs=115.4
Q ss_pred cccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC---------------CCcccccccch-------
Q 024413 63 INFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV---------------MTLPFAANIDI------- 120 (268)
Q Consensus 63 ~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~---------------~~~~~~~~~~~------- 120 (268)
...+.+|+.++++||+|||||||+|.++|+..|..|++.+++..+.. .++....|+..
T Consensus 25 sL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNvafgL~l~Gi 104 (259)
T COG4525 25 SLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVAFGLQLRGI 104 (259)
T ss_pred ceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCccchhhHHHHHHHHHHHhcCC
Confidence 34488999999999999999999999999999999999998874321 11122222211
Q ss_pred ---hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCC-CCcchhhhhhHHHHHHHHHhcc
Q 024413 121 ---RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP-GQIEIFTWSASGAIITEAFAST 196 (268)
Q Consensus 121 ---~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDeP-G~~~~~~~~~~~~~i~~~~~~~ 196 (268)
.....+.+.+..++|....+.. +-+||||||||+.||||++-+|+++++||| |..+..++..+...+...|+.+
T Consensus 105 ~k~~R~~~a~q~l~~VgL~~~~~~~--i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~t 182 (259)
T COG4525 105 EKAQRREIAHQMLALVGLEGAEHKY--IWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQET 182 (259)
T ss_pred CHHHHHHHHHHHHHHhCcccccccc--eEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHh
Confidence 1234567788999999887555 999999999999999999999999999999 6677777777888888888888
Q ss_pred CCcEEEEEEcCCC
Q 024413 197 FPTVVTYVVDTPR 209 (268)
Q Consensus 197 ~~d~vv~vvD~~~ 209 (268)
..-+.+..+|.++
T Consensus 183 gk~~lliTH~ieE 195 (259)
T COG4525 183 GKQVLLITHDIEE 195 (259)
T ss_pred CCeEEEEeccHHH
Confidence 7777777777643
No 19
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.90 E-value=3.9e-23 Score=176.63 Aligned_cols=147 Identities=14% Similarity=0.043 Sum_probs=106.0
Q ss_pred CcccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCC-----------------cccccccch--
Q 024413 60 SSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT-----------------LPFAANIDI-- 120 (268)
Q Consensus 60 ~~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~-----------------~~~~~~~~~-- 120 (268)
......+.+|++++|+|++|||||||.++|+|+.+|+.|.|+++|....... -...+..++
T Consensus 24 ~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~ 103 (252)
T COG1124 24 NNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGR 103 (252)
T ss_pred cceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHH
Confidence 3445568999999999999999999999999999999999999996432210 000111111
Q ss_pred ------------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHH
Q 024413 121 ------------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAI 188 (268)
Q Consensus 121 ------------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~ 188 (268)
....++.++++.++|.+.-..+. |.+|||||+||++||||+..+|+++|+|||+-..+..-....-.
T Consensus 104 ~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~-P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~Iln 182 (252)
T COG1124 104 ILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRR-PHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILN 182 (252)
T ss_pred HHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcC-chhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHH
Confidence 11234788999999987644443 89999999999999999999999999999987654343444444
Q ss_pred HHHHHhccCC-cEEEEEEcC
Q 024413 189 ITEAFASTFP-TVVTYVVDT 207 (268)
Q Consensus 189 i~~~~~~~~~-d~vv~vvD~ 207 (268)
+...++..+. ..+++.+|.
T Consensus 183 lL~~l~~~~~lt~l~IsHdl 202 (252)
T COG1124 183 LLLELKKERGLTYLFISHDL 202 (252)
T ss_pred HHHHHHHhcCceEEEEeCcH
Confidence 4444444443 555555665
No 20
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.89 E-value=6.4e-23 Score=176.01 Aligned_cols=144 Identities=15% Similarity=0.100 Sum_probs=100.9
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC-------------CC----------ccccccc
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV-------------MT----------LPFAANI 118 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~-------------~~----------~~~~~~~ 118 (268)
....+.+|++++|+||||||||||+++|+|+.+|++|.++++|.+... .. .+..+++
T Consensus 22 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l 101 (216)
T TIGR00960 22 LNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNV 101 (216)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHH
Confidence 344589999999999999999999999999999999999998865311 00 1111111
Q ss_pred chh----------hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHH
Q 024413 119 DIR----------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAI 188 (268)
Q Consensus 119 ~~~----------~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~ 188 (268)
... ...++.++++.+++....... +..|||||+||+++|+|++.+|+++|+|||+..-+.........
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~ 179 (216)
T TIGR00960 102 AFPLRIIGVPPRDANERVSAALEKVGLEGKAHAL--PMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMR 179 (216)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCC--hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHH
Confidence 110 123466788999997654444 89999999999999999999999999999987543222222233
Q ss_pred HHHHHhccCCcEEEEEEcC
Q 024413 189 ITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 189 i~~~~~~~~~d~vv~vvD~ 207 (268)
+...++.....+++..+|.
T Consensus 180 ~l~~~~~~~~tii~vsH~~ 198 (216)
T TIGR00960 180 LFEEFNRRGTTVLVATHDI 198 (216)
T ss_pred HHHHHHHCCCEEEEEeCCH
Confidence 3334433334555555654
No 21
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.89 E-value=2.1e-23 Score=178.32 Aligned_cols=148 Identities=15% Similarity=0.077 Sum_probs=112.1
Q ss_pred CCcccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC---------------------CCcccccc
Q 024413 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV---------------------MTLPFAAN 117 (268)
Q Consensus 59 ~~~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~---------------------~~~~~~~~ 117 (268)
.......+++|++++||||||||||||+|+|+|+++|++|.|++.|.+... ..++..+|
T Consensus 20 l~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlEN 99 (250)
T COG0411 20 VNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLEN 99 (250)
T ss_pred EeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccccccCCCcHHHH
Confidence 345556689999999999999999999999999999999999999987542 12222222
Q ss_pred cch----------------------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCC
Q 024413 118 IDI----------------------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (268)
Q Consensus 118 ~~~----------------------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG 175 (268)
+-+ ....++.++++.++|....+.. ..+||+|+++|+.||+|++.+|++++||||.
T Consensus 100 v~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~--A~~LsyG~qR~LEIArALa~~P~lLLLDEPa 177 (250)
T COG0411 100 VAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRP--AGNLSYGQQRRLEIARALATQPKLLLLDEPA 177 (250)
T ss_pred HHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcch--hhcCChhHhHHHHHHHHHhcCCCEEEecCcc
Confidence 211 0123466789999999887777 8999999999999999999999999999998
Q ss_pred CcchhhhhhHHHHHHHHHhccC-CcEEEEEEcCC
Q 024413 176 QIEIFTWSASGAIITEAFASTF-PTVVTYVVDTP 208 (268)
Q Consensus 176 ~~~~~~~~~~~~~i~~~~~~~~-~d~vv~vvD~~ 208 (268)
..-..........+++.++... ..+++.=||..
T Consensus 178 AGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~ 211 (250)
T COG0411 178 AGLNPEETEELAELIRELRDRGGVTILLIEHDMK 211 (250)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccH
Confidence 7655444555556666666543 34444446663
No 22
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.89 E-value=7.9e-24 Score=186.48 Aligned_cols=152 Identities=18% Similarity=0.163 Sum_probs=113.9
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCC---------------------ccc---cc
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT---------------------LPF---AA 116 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~---------------------~~~---~~ 116 (268)
.....++.|++++|+|.+|||||||++++.+++.|+.|+|.+.|.|+...+ +|. .+
T Consensus 46 ~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~ 125 (386)
T COG4175 46 DASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLE 125 (386)
T ss_pred cceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhh
Confidence 445568999999999999999999999999999999999999999865211 111 11
Q ss_pred ccch----------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCC-cchhhhhhH
Q 024413 117 NIDI----------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQ-IEIFTWSAS 185 (268)
Q Consensus 117 ~~~~----------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~-~~~~~~~~~ 185 (268)
|... ....++.++++.+||..+.+.. |++|||||+|||.+||||+.+|+++|+|||.- .+|.-+..+
T Consensus 126 Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~y--p~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~m 203 (386)
T COG4175 126 NVAFGLEVQGVPKAEREERALEALELVGLEGYADKY--PNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEM 203 (386)
T ss_pred hhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcC--cccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHH
Confidence 1111 1245678899999999887777 99999999999999999999999999999965 566444444
Q ss_pred HHHHHHHHhccCCcEEEEEEcCCCcCCch
Q 024413 186 GAIITEAFASTFPTVVTYVVDTPRSANPM 214 (268)
Q Consensus 186 ~~~i~~~~~~~~~d~vv~vvD~~~~~~~~ 214 (268)
...+.+.-+.....+|+..+|-.+.+...
T Consensus 204 QdeLl~Lq~~l~KTIvFitHDLdEAlriG 232 (386)
T COG4175 204 QDELLELQAKLKKTIVFITHDLDEALRIG 232 (386)
T ss_pred HHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence 44554443334446666667775544433
No 23
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.89 E-value=9.1e-23 Score=173.80 Aligned_cols=144 Identities=13% Similarity=0.030 Sum_probs=101.4
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCC-------CCCcc-----------cccccch--
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-------VMTLP-----------FAANIDI-- 120 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~-------~~~~~-----------~~~~~~~-- 120 (268)
.....+++|++++|+||||||||||+++|+|+.+|++|.++++|.+.. ...++ ..+++..
T Consensus 18 ~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~ 97 (205)
T cd03226 18 DLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGL 97 (205)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhhhh
Confidence 334458899999999999999999999999999999999999886531 00111 1111111
Q ss_pred ----hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc-hhhhhhHHHHHHHHHhc
Q 024413 121 ----RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE-IFTWSASGAIITEAFAS 195 (268)
Q Consensus 121 ----~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~-~~~~~~~~~~i~~~~~~ 195 (268)
....++.++++.+++....... +..|||||+||+++|+|++.+|+++|+|||+..- +...... ..+...++.
T Consensus 98 ~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l-~~~l~~~~~ 174 (205)
T cd03226 98 KELDAGNEQAETVLKDLDLYALKERH--PLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERV-GELIRELAA 174 (205)
T ss_pred hhcCccHHHHHHHHHHcCCchhcCCC--chhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHH-HHHHHHHHH
Confidence 1123577889999998655444 8999999999999999999999999999998754 3332323 333333333
Q ss_pred cCCcEEEEEEcC
Q 024413 196 TFPTVVTYVVDT 207 (268)
Q Consensus 196 ~~~d~vv~vvD~ 207 (268)
....+++..+|.
T Consensus 175 ~~~tii~~sH~~ 186 (205)
T cd03226 175 QGKAVIVITHDY 186 (205)
T ss_pred CCCEEEEEeCCH
Confidence 334555555554
No 24
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.89 E-value=1.2e-22 Score=165.23 Aligned_cols=145 Identities=15% Similarity=0.126 Sum_probs=109.1
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC------------------------CCcccccc
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV------------------------MTLPFAAN 117 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~------------------------~~~~~~~~ 117 (268)
....++.|+.++|+||+|||||||+-.++|+..+++|.|++.|.+... ++++..+|
T Consensus 29 V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlEN 108 (228)
T COG4181 29 VELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALEN 108 (228)
T ss_pred ceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhh
Confidence 344589999999999999999999999999999999999999886431 11222223
Q ss_pred cch----------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCC-cchhhhhhHH
Q 024413 118 IDI----------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQ-IEIFTWSASG 186 (268)
Q Consensus 118 ~~~----------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~-~~~~~~~~~~ 186 (268)
+.. .......++++.+||+...... |.+||||++|||+||||++..|+++|.|||+= .+..+-....
T Consensus 109 V~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~Hy--P~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~ia 186 (228)
T COG4181 109 VALPLELRGESSADSRAGAKALLEAVGLGKRLTHY--PAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIA 186 (228)
T ss_pred ccchhhhcCCccccHHHHHHHHHHHhCcccccccC--ccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHH
Confidence 221 2345678899999999776665 99999999999999999999999999999954 4443333333
Q ss_pred HHHHHHHhccCCcEEEEEEcCC
Q 024413 187 AIITEAFASTFPTVVTYVVDTP 208 (268)
Q Consensus 187 ~~i~~~~~~~~~d~vv~vvD~~ 208 (268)
..+...-+......|++.+|..
T Consensus 187 DLlF~lnre~G~TlVlVTHD~~ 208 (228)
T COG4181 187 DLLFALNRERGTTLVLVTHDPQ 208 (228)
T ss_pred HHHHHHhhhcCceEEEEeCCHH
Confidence 4444444444567788778873
No 25
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=6.5e-23 Score=170.16 Aligned_cols=147 Identities=18% Similarity=0.152 Sum_probs=118.2
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC------------------------------
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM------------------------------ 110 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~------------------------------ 110 (268)
.....+++|.+++++||||||||||+.+++++.+.++|.++++|.+....
T Consensus 19 ~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~F 98 (252)
T COG4604 19 DVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGF 98 (252)
T ss_pred cceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhchhhheeEHHHHhhc
Confidence 44455899999999999999999999999999999999999999876421
Q ss_pred -Cccccc-ccchhhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHH
Q 024413 111 -TLPFAA-NIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAI 188 (268)
Q Consensus 111 -~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~ 188 (268)
.+|+.. .++..++..+++.++.++|.+-.... +.+||||||||.-+|+.++++.+++|||||--..+..++.....
T Consensus 99 GRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dry--Ld~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk 176 (252)
T COG4604 99 GRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRY--LDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMK 176 (252)
T ss_pred CCCcccCCCCchHHHHHHHHHHHHhcccchHHHh--HHhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHH
Confidence 123222 22346788899999999998766655 89999999999999999999999999999987665566666666
Q ss_pred HHHHHhccC-CcEEEEEEcCCC
Q 024413 189 ITEAFASTF-PTVVTYVVDTPR 209 (268)
Q Consensus 189 i~~~~~~~~-~d~vv~vvD~~~ 209 (268)
+.+.++.+. ..+|++++|...
T Consensus 177 ~Lrrla~el~KtiviVlHDINf 198 (252)
T COG4604 177 ILRRLADELGKTIVVVLHDINF 198 (252)
T ss_pred HHHHHHHHhCCeEEEEEecccH
Confidence 666665544 577888888753
No 26
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.89 E-value=4.8e-23 Score=171.39 Aligned_cols=140 Identities=14% Similarity=0.093 Sum_probs=104.2
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC-------------------Ccccccccch-
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM-------------------TLPFAANIDI- 120 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~-------------------~~~~~~~~~~- 120 (268)
...+.++.|++++|+|+|||||||+|++|++++.|++|.+++++.|..-. .++..+|+..
T Consensus 20 dVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~F 99 (245)
T COG4555 20 DVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYF 99 (245)
T ss_pred heeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHHHH
Confidence 34455899999999999999999999999999999999999999875422 1222222211
Q ss_pred ---------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHH
Q 024413 121 ---------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITE 191 (268)
Q Consensus 121 ---------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~ 191 (268)
.-..+++++.+.|+|....+.. +..||.|||||++||||++++|+++++|||.-..+-.........+.
T Consensus 100 a~L~~l~~~~~kari~~l~k~l~l~~~~~rR--v~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~ 177 (245)
T COG4555 100 ARLNGLSRKEIKARIAELSKRLQLLEYLDRR--VGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIK 177 (245)
T ss_pred HHHhhhhhhHHHHHHHHHHHHhChHHHHHHH--HhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHH
Confidence 1145688899999999877777 89999999999999999999999999999977543222333334444
Q ss_pred HHhccCCcEEEE
Q 024413 192 AFASTFPTVVTY 203 (268)
Q Consensus 192 ~~~~~~~d~vv~ 203 (268)
+.+.+ .-+|+|
T Consensus 178 q~k~e-gr~viF 188 (245)
T COG4555 178 QLKNE-GRAVIF 188 (245)
T ss_pred HhhcC-CcEEEE
Confidence 44333 344444
No 27
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.88 E-value=1.6e-22 Score=182.30 Aligned_cols=115 Identities=17% Similarity=0.182 Sum_probs=89.6
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC---------CCc----------ccccccch--
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV---------MTL----------PFAANIDI-- 120 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~---------~~~----------~~~~~~~~-- 120 (268)
....+++|++++|+||||||||||+++|+|+.+|++|.++++|.+... ..+ +..+++..
T Consensus 12 vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~ 91 (302)
T TIGR01188 12 VNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMG 91 (302)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHHHHH
Confidence 344589999999999999999999999999999999999998865421 011 11111111
Q ss_pred --h------hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc
Q 024413 121 --R------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE 178 (268)
Q Consensus 121 --~------~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~ 178 (268)
. ...++.++++.++|....... ++.|||||+||++||+|++.+|+++|+|||+..-
T Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gL 155 (302)
T TIGR01188 92 RLYGLPKDEAEERAEELLELFELGEAADRP--VGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGL 155 (302)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCChhHhCCc--hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 0 123467789999997654444 8999999999999999999999999999998753
No 28
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.88 E-value=3.8e-22 Score=168.03 Aligned_cols=144 Identities=13% Similarity=0.018 Sum_probs=100.4
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC------------CCcccc-----------ccc
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV------------MTLPFA-----------ANI 118 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~------------~~~~~~-----------~~~ 118 (268)
....+.+|++++|+|+||||||||+++|+|+.+|++|.++++|.+... ..++.. +++
T Consensus 11 vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~~nl 90 (190)
T TIGR01166 11 LNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAADVDQDV 90 (190)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccccHHHHH
Confidence 344589999999999999999999999999999999999998865321 001111 111
Q ss_pred ch-------h---hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHH
Q 024413 119 DI-------R---DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAI 188 (268)
Q Consensus 119 ~~-------~---~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~ 188 (268)
.. . ....+.++++.+++....... +..||+||+||++||+|++.+|+++|+|||+..-+.........
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~ 168 (190)
T TIGR01166 91 AFGPLNLGLSEAEVERRVREALTAVGASGLRERP--THCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLA 168 (190)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCC--hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 10 0 012456788889987654444 89999999999999999999999999999987543222222233
Q ss_pred HHHHHhccCCcEEEEEEcC
Q 024413 189 ITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 189 i~~~~~~~~~d~vv~vvD~ 207 (268)
+...++.....+++..+|.
T Consensus 169 ~l~~~~~~~~tili~sH~~ 187 (190)
T TIGR01166 169 ILRRLRAEGMTVVISTHDV 187 (190)
T ss_pred HHHHHHHcCCEEEEEeecc
Confidence 3333333334566666665
No 29
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=2.9e-22 Score=171.60 Aligned_cols=145 Identities=14% Similarity=0.046 Sum_probs=100.4
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC--------CCc----------ccccccch--
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV--------MTL----------PFAANIDI-- 120 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~--------~~~----------~~~~~~~~-- 120 (268)
.....+.+|++++|+|+||||||||+++|+|+.+|++|.+++++.+... ..+ +..+++..
T Consensus 18 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~ 97 (213)
T cd03259 18 DLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGL 97 (213)
T ss_pred ceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHhHH
Confidence 3445589999999999999999999999999999999999998865321 001 11111110
Q ss_pred --------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHH
Q 024413 121 --------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEA 192 (268)
Q Consensus 121 --------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~ 192 (268)
.....+.++++.+++....... +..|||||+||++||++++.+|+++|+|||+..-+.........+...
T Consensus 98 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~ 175 (213)
T cd03259 98 KLRGVPKAEIRARVRELLELVGLEGLLNRY--PHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKE 175 (213)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCChhhhhcC--hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 0122456788899987554444 889999999999999999999999999999875432222222333333
Q ss_pred Hhc-cCCcEEEEEEcC
Q 024413 193 FAS-TFPTVVTYVVDT 207 (268)
Q Consensus 193 ~~~-~~~d~vv~vvD~ 207 (268)
++. ....+++..+|.
T Consensus 176 ~~~~~~~tii~~sH~~ 191 (213)
T cd03259 176 LQRELGITTIYVTHDQ 191 (213)
T ss_pred HHHHcCCEEEEEecCH
Confidence 333 234555555554
No 30
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.88 E-value=3e-22 Score=171.97 Aligned_cols=145 Identities=17% Similarity=0.128 Sum_probs=100.4
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC-----------CC-------------ccccc
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV-----------MT-------------LPFAA 116 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~-----------~~-------------~~~~~ 116 (268)
.....+++|++++|+||||||||||+++|+|+++|++|.++++|.+... .. .+..+
T Consensus 22 ~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 101 (218)
T cd03255 22 GVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALE 101 (218)
T ss_pred eeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHH
Confidence 3344589999999999999999999999999999999999998865321 00 01111
Q ss_pred ccch----h------hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHH
Q 024413 117 NIDI----R------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASG 186 (268)
Q Consensus 117 ~~~~----~------~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~ 186 (268)
++.. . ....+.++++.+++....... +..|||||+||++||+|++.+|+++|+|||+..-+.......
T Consensus 102 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l 179 (218)
T cd03255 102 NVELPLLLAGVPKKERRERAEELLERVGLGDRLNHY--PSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEV 179 (218)
T ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcC--hhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHH
Confidence 1111 0 123466788999997654444 899999999999999999999999999999875432222233
Q ss_pred HHHHHHHhc-cCCcEEEEEEcC
Q 024413 187 AIITEAFAS-TFPTVVTYVVDT 207 (268)
Q Consensus 187 ~~i~~~~~~-~~~d~vv~vvD~ 207 (268)
..+...++. ....+++..+|.
T Consensus 180 ~~~l~~~~~~~~~tii~~sH~~ 201 (218)
T cd03255 180 MELLRELNKEAGTTIVVVTHDP 201 (218)
T ss_pred HHHHHHHHHhcCCeEEEEECCH
Confidence 333333333 234555555554
No 31
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=2.4e-22 Score=184.90 Aligned_cols=115 Identities=13% Similarity=0.048 Sum_probs=91.3
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC------------------CCcccccccch--h
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV------------------MTLPFAANIDI--R 121 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~------------------~~~~~~~~~~~--~ 121 (268)
....+.+|++++|+||||||||||+++|+|+.+|++|.|+++|.+... ..++..+|+.. +
T Consensus 23 vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~ 102 (356)
T PRK11650 23 IDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLK 102 (356)
T ss_pred eeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHh
Confidence 345588999999999999999999999999999999999999876421 01122222211 0
Q ss_pred --------hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc
Q 024413 122 --------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE 178 (268)
Q Consensus 122 --------~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~ 178 (268)
...++.++++.++|....... +.+|||||+||++||||++.+|+++|+|||....
T Consensus 103 ~~~~~~~~~~~~~~~~l~~~gL~~~~~~~--~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~L 165 (356)
T PRK11650 103 IRGMPKAEIEERVAEAARILELEPLLDRK--PRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNL 165 (356)
T ss_pred hcCCCHHHHHHHHHHHHHHcCChhHhhCC--hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 123567889999998665555 9999999999999999999999999999998754
No 32
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.88 E-value=3e-22 Score=183.23 Aligned_cols=119 Identities=14% Similarity=0.129 Sum_probs=91.9
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC----------C-------------cccccc
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM----------T-------------LPFAAN 117 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~----------~-------------~~~~~~ 117 (268)
.....+.+|++++|+|+||||||||+++|+|+.+|++|.++++|.+.... . .+..++
T Consensus 23 ~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~en 102 (343)
T TIGR02314 23 NVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGN 102 (343)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHH
Confidence 34455899999999999999999999999999999999999998764210 0 011111
Q ss_pred cch----------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCc-chhh
Q 024413 118 IDI----------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQI-EIFT 181 (268)
Q Consensus 118 ~~~----------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~-~~~~ 181 (268)
+.. ....++.++++.++|....... +.+|||||+||++||||++.+|+++|+|||+.. |+.+
T Consensus 103 i~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~--~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t 175 (343)
T TIGR02314 103 VALPLELDNTPKDEIKRKVTELLALVGLGDKHDSY--PSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPAT 175 (343)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCC--hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHH
Confidence 110 0123467889999998654444 999999999999999999999999999999875 4433
No 33
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=3.4e-22 Score=172.10 Aligned_cols=144 Identities=16% Similarity=0.114 Sum_probs=99.8
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC-----CC----------cccccccchh-----
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV-----MT----------LPFAANIDIR----- 121 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~-----~~----------~~~~~~~~~~----- 121 (268)
....+++|++++|+|+||||||||+++|+|+.+|++|.++++|.+... .. .+..+++...
T Consensus 23 vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 102 (220)
T cd03293 23 ISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVALGLELQG 102 (220)
T ss_pred eeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecccccccCCCHHHHHHHHHHHcC
Confidence 344589999999999999999999999999999999999998865310 00 1111121110
Q ss_pred -----hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc-hhhhhhHHHHHHHHHhc
Q 024413 122 -----DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE-IFTWSASGAIITEAFAS 195 (268)
Q Consensus 122 -----~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~-~~~~~~~~~~i~~~~~~ 195 (268)
....+.++++.+++....... +..|||||+||++||+|++.+|+++|+|||+..- +.+.......+.+..+.
T Consensus 103 ~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~ 180 (220)
T cd03293 103 VPKAEARERAEELLELVGLSGFENAY--PHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRE 180 (220)
T ss_pred CCHHHHHHHHHHHHHHcCChhhhhCC--cccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 123466788999997544444 8899999999999999999999999999998754 33322233333322222
Q ss_pred cCCcEEEEEEcC
Q 024413 196 TFPTVVTYVVDT 207 (268)
Q Consensus 196 ~~~d~vv~vvD~ 207 (268)
....+++..+|.
T Consensus 181 ~~~tiii~sH~~ 192 (220)
T cd03293 181 TGKTVLLVTHDI 192 (220)
T ss_pred cCCEEEEEecCH
Confidence 334555555555
No 34
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.88 E-value=4.3e-22 Score=170.56 Aligned_cols=145 Identities=14% Similarity=0.085 Sum_probs=99.7
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC-------------CCcc----------cccc
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV-------------MTLP----------FAAN 117 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~-------------~~~~----------~~~~ 117 (268)
.....+++|++++|+|+||||||||+++|+|+.+|++|.+++++.++.. ..++ ..++
T Consensus 20 ~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~ 99 (214)
T TIGR02673 20 DVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYEN 99 (214)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHHHH
Confidence 3344589999999999999999999999999999999999998865421 0001 1111
Q ss_pred cchh----------hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHH
Q 024413 118 IDIR----------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGA 187 (268)
Q Consensus 118 ~~~~----------~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~ 187 (268)
+... ....+.++++.+++....... +..|||||+||++||+|++.+|+++|+|||+..-+........
T Consensus 100 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~ 177 (214)
T TIGR02673 100 VALPLEVRGKKEREIQRRVGAALRQVGLEHKADAF--PEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERIL 177 (214)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCC--hhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHH
Confidence 1110 123456788889987544333 8899999999999999999999999999998754322222233
Q ss_pred HHHHHHhccCCcEEEEEEcC
Q 024413 188 IITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 188 ~i~~~~~~~~~d~vv~vvD~ 207 (268)
.+.+.+......+++..+|.
T Consensus 178 ~~l~~~~~~~~tii~~tH~~ 197 (214)
T TIGR02673 178 DLLKRLNKRGTTVIVATHDL 197 (214)
T ss_pred HHHHHHHHcCCEEEEEeCCH
Confidence 33333333334555555554
No 35
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=5.3e-22 Score=172.50 Aligned_cols=144 Identities=16% Similarity=0.077 Sum_probs=99.5
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC-------------C----------ccccccc
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM-------------T----------LPFAANI 118 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~-------------~----------~~~~~~~ 118 (268)
....+.+|++++|+||||||||||+++|+|+.+|++|.++++|.+.... . .+..+++
T Consensus 19 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l 98 (235)
T cd03261 19 VDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENV 98 (235)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHH
Confidence 3445899999999999999999999999999999999999988653210 0 1111111
Q ss_pred ch--h---------hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHH
Q 024413 119 DI--R---------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGA 187 (268)
Q Consensus 119 ~~--~---------~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~ 187 (268)
.. . ....+.++++.+++....... +..|||||+||++||+|++.+|+++|+|||+..-+........
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~ 176 (235)
T cd03261 99 AFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLY--PAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVID 176 (235)
T ss_pred HHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCC--hhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHH
Confidence 10 0 022456688899997654444 8999999999999999999999999999998754322222222
Q ss_pred HHHHHHhc-cCCcEEEEEEcC
Q 024413 188 IITEAFAS-TFPTVVTYVVDT 207 (268)
Q Consensus 188 ~i~~~~~~-~~~d~vv~vvD~ 207 (268)
.+.+.+.. ....+++..+|.
T Consensus 177 ~~l~~~~~~~~~tvi~vsH~~ 197 (235)
T cd03261 177 DLIRSLKKELGLTSIMVTHDL 197 (235)
T ss_pred HHHHHHHHhcCcEEEEEecCH
Confidence 33333333 234555555554
No 36
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.88 E-value=4.3e-22 Score=169.67 Aligned_cols=145 Identities=12% Similarity=0.015 Sum_probs=101.8
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC-------------------Ccccccccch-
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM-------------------TLPFAANIDI- 120 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~-------------------~~~~~~~~~~- 120 (268)
.....+++|++++|+|+||||||||+++|+|..+|++|.|+++|.+.... ..+..+++..
T Consensus 19 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~ 98 (204)
T PRK13538 19 GLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENLRFY 98 (204)
T ss_pred cceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHHHHHHHH
Confidence 44455899999999999999999999999999999999999988653210 0111111111
Q ss_pred ------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHh
Q 024413 121 ------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFA 194 (268)
Q Consensus 121 ------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~ 194 (268)
.....+.++++.+++....... +..|||||+||+++|+|++.+|+++|+|||+..-+.........+.+.++
T Consensus 99 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 176 (204)
T PRK13538 99 QRLHGPGDDEALWEALAQVGLAGFEDVP--VRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHA 176 (204)
T ss_pred HHhcCccHHHHHHHHHHHcCCHHHhhCC--hhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 1234567789999997544433 89999999999999999999999999999987543222222233333333
Q ss_pred ccCCcEEEEEEcC
Q 024413 195 STFPTVVTYVVDT 207 (268)
Q Consensus 195 ~~~~d~vv~vvD~ 207 (268)
.....+++..+|.
T Consensus 177 ~~~~tiii~sh~~ 189 (204)
T PRK13538 177 EQGGMVILTTHQD 189 (204)
T ss_pred HCCCEEEEEecCh
Confidence 3334556655665
No 37
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.88 E-value=3.1e-23 Score=172.32 Aligned_cols=149 Identities=15% Similarity=0.071 Sum_probs=112.2
Q ss_pred CCcccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC-----------CCccccccc---------
Q 024413 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV-----------MTLPFAANI--------- 118 (268)
Q Consensus 59 ~~~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~-----------~~~~~~~~~--------- 118 (268)
.......+++|++++++|||||||||.+.++.|+.+|++|.|.+++.|... .++|+..++
T Consensus 20 v~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dN 99 (243)
T COG1137 20 VNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDN 99 (243)
T ss_pred eeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccchHhhcCcHHHH
Confidence 345556699999999999999999999999999999999999999998642 233433322
Q ss_pred -c----hh--------hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCc-chhhhhh
Q 024413 119 -D----IR--------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQI-EIFTWSA 184 (268)
Q Consensus 119 -~----~~--------~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~-~~~~~~~ 184 (268)
. ++ ...+.+++++.|.+..-.+.. ...||||+|+|+.|||||+.+|+++|||||... ||- ...
T Consensus 100 i~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~--a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPi-aV~ 176 (243)
T COG1137 100 IMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSK--AYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPI-AVI 176 (243)
T ss_pred HHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCc--ccccccchHHHHHHHHHHhcCCCEEEecCCccCCCch-hHH
Confidence 1 01 122466899999998665555 678999999999999999999999999999774 542 233
Q ss_pred HHHHHHHHHhccCCcEEEEEEcCCCc
Q 024413 185 SGAIITEAFASTFPTVVTYVVDTPRS 210 (268)
Q Consensus 185 ~~~~i~~~~~~~~~d~vv~vvD~~~~ 210 (268)
....+++.++...--+++..++.++.
T Consensus 177 dIq~iI~~L~~rgiGvLITDHNVREt 202 (243)
T COG1137 177 DIQRIIKHLKDRGIGVLITDHNVRET 202 (243)
T ss_pred HHHHHHHHHHhCCceEEEccccHHHH
Confidence 45566677766655666665665443
No 38
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.88 E-value=4.2e-22 Score=170.29 Aligned_cols=144 Identities=15% Similarity=0.040 Sum_probs=98.7
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC----------CCccc-----------ccccc
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV----------MTLPF-----------AANID 119 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~----------~~~~~-----------~~~~~ 119 (268)
.....+.+|++++|+||||||||||+++|+|+.+|++|.+++++.+... ..++. .+++.
T Consensus 19 ~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~ 98 (211)
T cd03225 19 DISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVA 98 (211)
T ss_pred ceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHHHHH
Confidence 3344588999999999999999999999999999999999998864321 01111 11111
Q ss_pred h-------h---hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc-hhhhhhHHHH
Q 024413 120 I-------R---DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE-IFTWSASGAI 188 (268)
Q Consensus 120 ~-------~---~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~-~~~~~~~~~~ 188 (268)
. . ....+.++++.+++....... +..|||||+||++||+|++.+|+++|+|||+..- +........
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~- 175 (211)
T cd03225 99 FGLENLGLPEEEIEERVEEALELVGLEGLRDRS--PFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLE- 175 (211)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCC--cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-
Confidence 1 0 122456688889987543333 8899999999999999999999999999998754 332222333
Q ss_pred HHHHHhccCCcEEEEEEcC
Q 024413 189 ITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 189 i~~~~~~~~~d~vv~vvD~ 207 (268)
+...++.....+++..+|.
T Consensus 176 ~l~~~~~~~~tvi~~sH~~ 194 (211)
T cd03225 176 LLKKLKAEGKTIIIVTHDL 194 (211)
T ss_pred HHHHHHHcCCEEEEEeCCH
Confidence 3333333334455555554
No 39
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.88 E-value=3.6e-22 Score=180.36 Aligned_cols=116 Identities=12% Similarity=0.084 Sum_probs=90.6
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC-------------------Ccccccccch-
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM-------------------TLPFAANIDI- 120 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~-------------------~~~~~~~~~~- 120 (268)
.....+++|++++|+||||||||||+++|+|+..|++|.++++|.++... .++..+++..
T Consensus 25 ~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~ 104 (306)
T PRK13537 25 GLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVF 104 (306)
T ss_pred cceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHH
Confidence 34455899999999999999999999999999999999999998764311 0111112111
Q ss_pred ------h---hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc
Q 024413 121 ------R---DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE 178 (268)
Q Consensus 121 ------~---~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~ 178 (268)
. ...++.++++.+++....... ++.||+||+||++||+|++.+|+++|+|||+...
T Consensus 105 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gL 169 (306)
T PRK13537 105 GRYFGLSAAAARALVPPLLEFAKLENKADAK--VGELSGGMKRRLTLARALVNDPDVLVLDEPTTGL 169 (306)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCchHhcCc--hhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCC
Confidence 0 123456788999997655544 8999999999999999999999999999998754
No 40
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.88 E-value=5.1e-22 Score=170.95 Aligned_cols=144 Identities=14% Similarity=0.046 Sum_probs=99.9
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC--------------CC----------cccccc
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV--------------MT----------LPFAAN 117 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~--------------~~----------~~~~~~ 117 (268)
....+.+|++++|+||||||||||+++|+|..+|++|.++++|.+... .. .+..++
T Consensus 24 isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~ 103 (221)
T TIGR02211 24 VSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALEN 103 (221)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHH
Confidence 344589999999999999999999999999999999999998765321 00 011111
Q ss_pred cch----------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHH
Q 024413 118 IDI----------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGA 187 (268)
Q Consensus 118 ~~~----------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~ 187 (268)
+.. .....+.++++.+++....... +..|||||+||++||++++.+|+++|+|||+..-+........
T Consensus 104 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~ 181 (221)
T TIGR02211 104 VAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHR--PSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIF 181 (221)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCC--hhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHH
Confidence 111 0122456788899997554444 8999999999999999999999999999998754322222333
Q ss_pred HHHHHHhcc-CCcEEEEEEcC
Q 024413 188 IITEAFAST-FPTVVTYVVDT 207 (268)
Q Consensus 188 ~i~~~~~~~-~~d~vv~vvD~ 207 (268)
.+...+... ...+|+..+|.
T Consensus 182 ~~l~~~~~~~~~tii~~tH~~ 202 (221)
T TIGR02211 182 DLMLELNRELNTSFLVVTHDL 202 (221)
T ss_pred HHHHHHHHhcCCEEEEEeCCH
Confidence 333333332 34555555555
No 41
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=4.8e-22 Score=171.13 Aligned_cols=145 Identities=17% Similarity=0.068 Sum_probs=100.0
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC-------------CC------cccccccch-
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV-------------MT------LPFAANIDI- 120 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~-------------~~------~~~~~~~~~- 120 (268)
.....+.+|++++|+|+||||||||+++|+|+.+|++|.++++|.+... +. .+..+++..
T Consensus 18 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~ 97 (220)
T cd03265 18 GVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIH 97 (220)
T ss_pred ceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHHHHHH
Confidence 3445588999999999999999999999999999999999998865321 00 011111110
Q ss_pred ---h------hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHH
Q 024413 121 ---R------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITE 191 (268)
Q Consensus 121 ---~------~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~ 191 (268)
. ...++.++++.+++....... +..|||||+||++||+|++.+|+++|+|||+..-+.........+..
T Consensus 98 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~ 175 (220)
T cd03265 98 ARLYGVPGAERRERIDELLDFVGLLEAADRL--VKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIE 175 (220)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC--hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHH
Confidence 0 123467788999997544433 89999999999999999999999999999987543222222333333
Q ss_pred HHhcc-CCcEEEEEEcC
Q 024413 192 AFAST-FPTVVTYVVDT 207 (268)
Q Consensus 192 ~~~~~-~~d~vv~vvD~ 207 (268)
.+... ...+++..+|.
T Consensus 176 ~~~~~~~~tvi~~tH~~ 192 (220)
T cd03265 176 KLKEEFGMTILLTTHYM 192 (220)
T ss_pred HHHHhcCCEEEEEeCCH
Confidence 33333 34555555554
No 42
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=6.6e-22 Score=171.77 Aligned_cols=144 Identities=13% Similarity=0.047 Sum_probs=100.1
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC-----------C---C----------cccccc
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV-----------M---T----------LPFAAN 117 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~-----------~---~----------~~~~~~ 117 (268)
....+++|++++|+|+||||||||+++|+|+.+|++|.++++|.+... . . .+..++
T Consensus 28 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~ 107 (233)
T PRK11629 28 VSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALEN 107 (233)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHH
Confidence 344589999999999999999999999999999999999998865321 0 0 011111
Q ss_pred cch-------h---hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHH
Q 024413 118 IDI-------R---DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGA 187 (268)
Q Consensus 118 ~~~-------~---~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~ 187 (268)
+.. . ...++.++++.+++....... +..|||||+||++||++++.+|+++|+|||+..-+........
T Consensus 108 l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~ 185 (233)
T PRK11629 108 VAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHR--PSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIF 185 (233)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCC--hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH
Confidence 111 0 123466788999997554444 8999999999999999999999999999998754322222233
Q ss_pred HHHHHHhc-cCCcEEEEEEcC
Q 024413 188 IITEAFAS-TFPTVVTYVVDT 207 (268)
Q Consensus 188 ~i~~~~~~-~~~d~vv~vvD~ 207 (268)
.+.+.++. ....+|+..+|.
T Consensus 186 ~~l~~~~~~~g~tvii~sH~~ 206 (233)
T PRK11629 186 QLLGELNRLQGTAFLVVTHDL 206 (233)
T ss_pred HHHHHHHHhCCCEEEEEeCCH
Confidence 33333332 234555555554
No 43
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.88 E-value=4.7e-22 Score=182.78 Aligned_cols=115 Identities=18% Similarity=0.153 Sum_probs=91.6
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC------------C------Ccccccccch--h
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV------------M------TLPFAANIDI--R 121 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~------------~------~~~~~~~~~~--~ 121 (268)
....+.+|++++|+||||||||||+++|+|+.+|++|.|.++|.+... + .++..+|+.. +
T Consensus 23 vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~ 102 (353)
T TIGR03265 23 ISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLK 102 (353)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHH
Confidence 344578999999999999999999999999999999999999876421 0 1122222221 0
Q ss_pred --------hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc
Q 024413 122 --------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE 178 (268)
Q Consensus 122 --------~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~ 178 (268)
...++.++++.++|....... +.+|||||+||++||||++.+|+++|+|||...-
T Consensus 103 ~~~~~~~~~~~~~~~~l~~l~L~~~~~~~--~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~L 165 (353)
T TIGR03265 103 NRGMGRAEVAERVAELLDLVGLPGSERKY--PGQLSGGQQQRVALARALATSPGLLLLDEPLSAL 165 (353)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCCchhhCC--hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 134678899999998765555 9999999999999999999999999999997643
No 44
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.88 E-value=5.1e-22 Score=169.46 Aligned_cols=145 Identities=14% Similarity=0.027 Sum_probs=100.1
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC------------CC------cccccccch--
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV------------MT------LPFAANIDI-- 120 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~------------~~------~~~~~~~~~-- 120 (268)
.....+.+|++++|+|+||||||||+++|+|+.+|++|.+.++|.+... +. .+..+++..
T Consensus 18 ~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~ 97 (208)
T cd03268 18 DISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLA 97 (208)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHHHHHHH
Confidence 3344588999999999999999999999999999999999998875421 00 111111111
Q ss_pred ----hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhcc
Q 024413 121 ----RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAST 196 (268)
Q Consensus 121 ----~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~ 196 (268)
....++.++++.+++....... +..|||||+||+++|++++.+|+++|+|||+..-+.........+...++..
T Consensus 98 ~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 175 (208)
T cd03268 98 RLLGIRKKRIDEVLDVVGLKDSAKKK--VKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQ 175 (208)
T ss_pred HhcCCcHHHHHHHHHHcCCHHHHhhh--HhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHC
Confidence 0133567788999987544443 8999999999999999999999999999998754322222222333333333
Q ss_pred CCcEEEEEEcC
Q 024413 197 FPTVVTYVVDT 207 (268)
Q Consensus 197 ~~d~vv~vvD~ 207 (268)
...+++..+|.
T Consensus 176 ~~tii~~tH~~ 186 (208)
T cd03268 176 GITVLISSHLL 186 (208)
T ss_pred CCEEEEEcCCH
Confidence 34445544554
No 45
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.88 E-value=2.3e-22 Score=174.54 Aligned_cols=145 Identities=16% Similarity=0.068 Sum_probs=108.0
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC-C-------C------cc--------------
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV-M-------T------LP-------------- 113 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~-~-------~------~~-------------- 113 (268)
....+.+|+.++|+|+||||||||+++|+|+.+|+.|.++++|.+... . . .|
T Consensus 23 v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~eva 102 (235)
T COG1122 23 VSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVA 102 (235)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHh
Confidence 344589999999999999999999999999999999999998876431 0 0 00
Q ss_pred cc-cccch---hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHH
Q 024413 114 FA-ANIDI---RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAII 189 (268)
Q Consensus 114 ~~-~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i 189 (268)
+. .+... ....++.++++.+++....... +..|||||+||++||.+++.+|+++|+|||+...+.........+
T Consensus 103 fg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~--p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~ 180 (235)
T COG1122 103 FGLENLGLPREEIEERVAEALELVGLEELLDRP--PFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLEL 180 (235)
T ss_pred hchhhcCCCHHHHHHHHHHHHHHcCchhhccCC--ccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHH
Confidence 00 00001 1245688899999999875555 999999999999999999999999999999986443333333444
Q ss_pred HHHHhcc-CCcEEEEEEcCC
Q 024413 190 TEAFAST-FPTVVTYVVDTP 208 (268)
Q Consensus 190 ~~~~~~~-~~d~vv~vvD~~ 208 (268)
...+... ...+|+..||..
T Consensus 181 l~~L~~~~~~tii~~tHd~~ 200 (235)
T COG1122 181 LKKLKEEGGKTIIIVTHDLE 200 (235)
T ss_pred HHHHHhcCCCeEEEEeCcHH
Confidence 4444444 357888888873
No 46
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=5.9e-22 Score=169.32 Aligned_cols=144 Identities=12% Similarity=0.018 Sum_probs=98.6
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCC----------CC------Ccccccccchh----
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA----------VM------TLPFAANIDIR---- 121 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~----------~~------~~~~~~~~~~~---- 121 (268)
....+.+|++++|+|+||||||||+++|+|..+|++|.++++|.+.. .+ ..+..+++...
T Consensus 19 v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~ 98 (210)
T cd03269 19 ISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLVYLAQLK 98 (210)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCcCCcCCcHHHHHHHHHHHc
Confidence 34458999999999999999999999999999999999999886531 00 01111121110
Q ss_pred ------hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhc
Q 024413 122 ------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS 195 (268)
Q Consensus 122 ------~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~ 195 (268)
....+.++++.+++...... .+..|||||+||+++|++++.+|+++|+|||...-+.........+.+.+..
T Consensus 99 ~~~~~~~~~~~~~~l~~~~l~~~~~~--~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~ 176 (210)
T cd03269 99 GLKKEEARRRIDEWLERLELSEYANK--RVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELAR 176 (210)
T ss_pred CCChHHHHHHHHHHHHHcCChHHHhC--cHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH
Confidence 12346678888998754443 3899999999999999999999999999999875432222222233333333
Q ss_pred cCCcEEEEEEcC
Q 024413 196 TFPTVVTYVVDT 207 (268)
Q Consensus 196 ~~~d~vv~vvD~ 207 (268)
....+++..+|.
T Consensus 177 ~~~tii~~sH~~ 188 (210)
T cd03269 177 AGKTVILSTHQM 188 (210)
T ss_pred CCCEEEEECCCH
Confidence 333444444443
No 47
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.88 E-value=6.9e-22 Score=169.10 Aligned_cols=145 Identities=14% Similarity=0.122 Sum_probs=99.7
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC------------CC----------ccccccc
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV------------MT----------LPFAANI 118 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~------------~~----------~~~~~~~ 118 (268)
.....+.+|++++|+|+||||||||+++|+|+.++++|.++++|.+... .. .+..+++
T Consensus 18 ~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l 97 (213)
T cd03262 18 GIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENI 97 (213)
T ss_pred CceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCcHHHHH
Confidence 3344588999999999999999999999999999999999998875421 00 1111111
Q ss_pred ch-----h------hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHH
Q 024413 119 DI-----R------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGA 187 (268)
Q Consensus 119 ~~-----~------~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~ 187 (268)
.. + ....+.++++.+++....... +..|||||+||+++|+|++.+|+++|+|||...-+........
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~ 175 (213)
T cd03262 98 TLAPIKVKGMSKAEAEERALELLEKVGLADKADAY--PAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVL 175 (213)
T ss_pred HhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhC--ccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHH
Confidence 10 0 112456678888887544443 8899999999999999999999999999998754322223333
Q ss_pred HHHHHHhccCCcEEEEEEcC
Q 024413 188 IITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 188 ~i~~~~~~~~~d~vv~vvD~ 207 (268)
.+...++.....+++..+|.
T Consensus 176 ~~l~~~~~~~~tvi~~sh~~ 195 (213)
T cd03262 176 DVMKDLAEEGMTMVVVTHEM 195 (213)
T ss_pred HHHHHHHHcCCEEEEEeCCH
Confidence 33344433334455544544
No 48
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.88 E-value=7.2e-22 Score=168.12 Aligned_cols=144 Identities=13% Similarity=0.078 Sum_probs=99.1
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC--------------C----------Ccccccc
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV--------------M----------TLPFAAN 117 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~--------------~----------~~~~~~~ 117 (268)
....+.+|++++|+|+||||||||+++|+|..+|++|.+++.|.+... . ..+..++
T Consensus 17 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~ 96 (206)
T TIGR03608 17 LNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENETVEEN 96 (206)
T ss_pred eEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCCcHHHH
Confidence 344588999999999999999999999999999999999998876210 0 0111111
Q ss_pred cch----------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHH
Q 024413 118 IDI----------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGA 187 (268)
Q Consensus 118 ~~~----------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~ 187 (268)
+.. ....++.++++.+++....... +..||+||+||++||+|++.+|+++|+|||+..-+........
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~ 174 (206)
T TIGR03608 97 LDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQK--IYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVL 174 (206)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCC--hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHH
Confidence 111 0123466788999986554444 8899999999999999999999999999998754322222222
Q ss_pred HHHHHHhccCCcEEEEEEcC
Q 024413 188 IITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 188 ~i~~~~~~~~~d~vv~vvD~ 207 (268)
.+.+.+......+++..+|.
T Consensus 175 ~~l~~~~~~~~tii~~sh~~ 194 (206)
T TIGR03608 175 DLLLELNDEGKTIIIVTHDP 194 (206)
T ss_pred HHHHHHHhcCCEEEEEeCCH
Confidence 33333333334555554554
No 49
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.88 E-value=8.5e-22 Score=171.18 Aligned_cols=145 Identities=15% Similarity=0.051 Sum_probs=99.8
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC-----------CCc----------ccccccc
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV-----------MTL----------PFAANID 119 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~-----------~~~----------~~~~~~~ 119 (268)
.....+++|++++|+|+||||||||+++|+|+.+|++|.++++|.+... ..+ +..+++.
T Consensus 18 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~ 97 (236)
T cd03219 18 DVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVM 97 (236)
T ss_pred CceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHHHHH
Confidence 3344588999999999999999999999999999999999998865321 000 1111111
Q ss_pred h----h----------------hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 120 I----R----------------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 120 ~----~----------------~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
. . ....+.++++.+++....... +..|||||+||+++|+|++.+|+++|+|||+..-+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD 175 (236)
T cd03219 98 VAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRP--AGELSYGQQRRLEIARALATDPKLLLLDEPAAGLN 175 (236)
T ss_pred HHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCC--hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 0 0 012456788889987544433 89999999999999999999999999999987543
Q ss_pred hhhhhHHHHHHHHHhccCCcEEEEEEcC
Q 024413 180 FTWSASGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 180 ~~~~~~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
.........+...++.....+|+..+|.
T Consensus 176 ~~~~~~l~~~l~~~~~~~~tii~vsH~~ 203 (236)
T cd03219 176 PEETEELAELIRELRERGITVLLVEHDM 203 (236)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEecCH
Confidence 2222222233333333334555555554
No 50
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.88 E-value=7e-22 Score=171.48 Aligned_cols=142 Identities=13% Similarity=0.029 Sum_probs=98.1
Q ss_pred ccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC---------------Ccccccccch--------
Q 024413 64 NFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM---------------TLPFAANIDI-------- 120 (268)
Q Consensus 64 ~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~---------------~~~~~~~~~~-------- 120 (268)
..+.+|++++|+|+||||||||+++|+|+.+|++|.++++|.+.... ..+..+++..
T Consensus 6 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~~~~~ 85 (230)
T TIGR01184 6 LTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVDRVLPD 85 (230)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHHhcccC
Confidence 34789999999999999999999999999999999999988653210 1111112111
Q ss_pred ----hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhcc
Q 024413 121 ----RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAST 196 (268)
Q Consensus 121 ----~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~ 196 (268)
.....+.++++.+++....... +..|||||+||++||++++.+|+++|+|||+..-+.........+...+...
T Consensus 86 ~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~ 163 (230)
T TIGR01184 86 LSKSERRAIVEEHIALVGLTEAADKR--PGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEE 163 (230)
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHcCC--hhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHh
Confidence 0112356788889987543333 8999999999999999999999999999998754322222222333333222
Q ss_pred -CCcEEEEEEcC
Q 024413 197 -FPTVVTYVVDT 207 (268)
Q Consensus 197 -~~d~vv~vvD~ 207 (268)
...+++..+|.
T Consensus 164 ~~~tii~~sH~~ 175 (230)
T TIGR01184 164 HRVTVLMVTHDV 175 (230)
T ss_pred cCCEEEEEeCCH
Confidence 34555555554
No 51
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.87 E-value=1.2e-21 Score=166.20 Aligned_cols=145 Identities=13% Similarity=-0.008 Sum_probs=101.5
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC---------CCcc----------cccccch-
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV---------MTLP----------FAANIDI- 120 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~---------~~~~----------~~~~~~~- 120 (268)
.....+.+|++++|+||||||||||+++|+|.++|++|.+++++.+... ..++ ..+++..
T Consensus 18 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~ 97 (198)
T TIGR01189 18 GLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALENLHFW 97 (198)
T ss_pred eeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEeccCcccccCCcHHHHHHHH
Confidence 3344588999999999999999999999999999999999998865311 0011 1111110
Q ss_pred -----hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhc
Q 024413 121 -----RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS 195 (268)
Q Consensus 121 -----~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~ 195 (268)
.+...+.++++.+++.+..... +..||+||+||++||+|++.+|+++|+|||+..-+.........+...++.
T Consensus 98 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 175 (198)
T TIGR01189 98 AAIHGGAQRTIEDALAAVGLTGFEDLP--AAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLA 175 (198)
T ss_pred HHHcCCcHHHHHHHHHHcCCHHHhcCC--hhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh
Confidence 0123467788889987654443 899999999999999999999999999999875442222233333333333
Q ss_pred cCCcEEEEEEcC
Q 024413 196 TFPTVVTYVVDT 207 (268)
Q Consensus 196 ~~~d~vv~vvD~ 207 (268)
....+++..+|.
T Consensus 176 ~~~tii~~sH~~ 187 (198)
T TIGR01189 176 RGGIVLLTTHQD 187 (198)
T ss_pred CCCEEEEEEccc
Confidence 344566666665
No 52
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.87 E-value=7.2e-22 Score=184.00 Aligned_cols=145 Identities=14% Similarity=0.095 Sum_probs=102.1
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC--------------------Ccccccccc-
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM--------------------TLPFAANID- 119 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~--------------------~~~~~~~~~- 119 (268)
...+.+++|++++|+||||||||||+++|+|+.+|++|.|+++|.++... .++..+++.
T Consensus 21 ~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~ 100 (402)
T PRK09536 21 GVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEM 100 (402)
T ss_pred eeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHh
Confidence 33445899999999999999999999999999999999999998764210 011111110
Q ss_pred -------------hhhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHH
Q 024413 120 -------------IRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASG 186 (268)
Q Consensus 120 -------------~~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~ 186 (268)
..+..++.++++.+++....... +..||||||||++||+|++++|+++|||||+...+.......
T Consensus 101 ~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~--~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l 178 (402)
T PRK09536 101 GRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRP--VTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRT 178 (402)
T ss_pred ccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCC--hhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHH
Confidence 11234577889999997655444 899999999999999999999999999999886443333333
Q ss_pred HHHHHHHhccCCcEEEEEEcC
Q 024413 187 AIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 187 ~~i~~~~~~~~~d~vv~vvD~ 207 (268)
..+.+.+......+++..+|.
T Consensus 179 ~~lL~~l~~~g~TIIivsHdl 199 (402)
T PRK09536 179 LELVRRLVDDGKTAVAAIHDL 199 (402)
T ss_pred HHHHHHHHhcCCEEEEEECCH
Confidence 334444433323444444443
No 53
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=6.5e-22 Score=181.69 Aligned_cols=115 Identities=14% Similarity=0.156 Sum_probs=90.9
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC------------------CCcccccccch--h
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV------------------MTLPFAANIDI--R 121 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~------------------~~~~~~~~~~~--~ 121 (268)
....+++|++++|+||||||||||+++|+|+.+|++|.|+++|.+... ..++..+|+.. +
T Consensus 25 isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~ 104 (351)
T PRK11432 25 LNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLK 104 (351)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHh
Confidence 344588999999999999999999999999999999999999875421 01112222211 0
Q ss_pred --------hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc
Q 024413 122 --------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE 178 (268)
Q Consensus 122 --------~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~ 178 (268)
...++.++++.++|....... +..|||||+||++||||++.+|+++|+|||...-
T Consensus 105 ~~~~~~~~~~~~v~~~l~~~gl~~~~~r~--~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~L 167 (351)
T PRK11432 105 MLGVPKEERKQRVKEALELVDLAGFEDRY--VDQISGGQQQRVALARALILKPKVLLFDEPLSNL 167 (351)
T ss_pred HcCCCHHHHHHHHHHHHHHcCCchhhcCC--hhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC
Confidence 123567789999998665544 9999999999999999999999999999998753
No 54
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.87 E-value=7.1e-22 Score=180.76 Aligned_cols=128 Identities=9% Similarity=0.064 Sum_probs=95.0
Q ss_pred CcccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC-------------------Ccccccccch
Q 024413 60 SSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM-------------------TLPFAANIDI 120 (268)
Q Consensus 60 ~~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~-------------------~~~~~~~~~~ 120 (268)
....+.+.+|++++|+||||||||||+++|+|++.|++|.++++|.++... .++..+++..
T Consensus 58 ~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~ 137 (340)
T PRK13536 58 NGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLV 137 (340)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHH
Confidence 344556899999999999999999999999999999999999998764210 0111111111
Q ss_pred -------h---hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCc-chhhhhhHHHHH
Q 024413 121 -------R---DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQI-EIFTWSASGAII 189 (268)
Q Consensus 121 -------~---~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~-~~~~~~~~~~~i 189 (268)
. ....+.++++.++|....... ++.||+||+||++||+|++.+|+++|+|||+.. |+.........+
T Consensus 138 ~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~--~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l 215 (340)
T PRK13536 138 FGRYFGMSTREIEAVIPSLLEFARLESKADAR--VSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERL 215 (340)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCchhhCCC--hhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 0 123456788889998655555 899999999999999999999999999999875 443333333333
No 55
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.87 E-value=6.9e-22 Score=169.25 Aligned_cols=144 Identities=12% Similarity=0.063 Sum_probs=99.4
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCC---------CCC--------cccccccch----
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA---------VMT--------LPFAANIDI---- 120 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~---------~~~--------~~~~~~~~~---- 120 (268)
....+++|++++|+|+||||||||+++|+|+.+|++|.++++|.+.. .+. .+..+++..
T Consensus 18 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~ 97 (213)
T cd03235 18 VSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYG 97 (213)
T ss_pred ceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccccCCCCcHHHHHHhcccc
Confidence 34458999999999999999999999999999999999999875420 010 111112110
Q ss_pred ----------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHH
Q 024413 121 ----------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIIT 190 (268)
Q Consensus 121 ----------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~ 190 (268)
....++.++++.+++....... +..|||||+||++||+|++.+|+++|+|||+..-+.........+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l 175 (213)
T cd03235 98 HKGLFRRLSKADKAKVDEALERVGLSELADRQ--IGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELL 175 (213)
T ss_pred ccccccCCCHHHHHHHHHHHHHcCCHHHHhCC--cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 1123466788899987543333 8899999999999999999999999999998754322222222333
Q ss_pred HHHhccCCcEEEEEEcC
Q 024413 191 EAFASTFPTVVTYVVDT 207 (268)
Q Consensus 191 ~~~~~~~~d~vv~vvD~ 207 (268)
..++.....+|+..+|.
T Consensus 176 ~~~~~~~~tvi~~sH~~ 192 (213)
T cd03235 176 RELRREGMTILVVTHDL 192 (213)
T ss_pred HHHHhcCCEEEEEeCCH
Confidence 33333334555555664
No 56
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.87 E-value=9.2e-22 Score=170.54 Aligned_cols=145 Identities=14% Similarity=0.054 Sum_probs=100.2
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC-----------CCc----------ccccccc
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV-----------MTL----------PFAANID 119 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~-----------~~~----------~~~~~~~ 119 (268)
.....+.+|++++|+|+||||||||+++|+|..+|++|.++++|.+... ..+ +..+++.
T Consensus 18 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~ 97 (232)
T cd03218 18 GVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENIL 97 (232)
T ss_pred cceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHH
Confidence 3344588999999999999999999999999999999999998864311 000 1111111
Q ss_pred h----h------hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHH
Q 024413 120 I----R------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAII 189 (268)
Q Consensus 120 ~----~------~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i 189 (268)
. . ....+.++++.+++....... +..||+||+||+++|+|++.+|+++|+|||+..-+.........+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~ 175 (232)
T cd03218 98 AVLEIRGLSKKEREEKLEELLEEFHITHLRKSK--ASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKI 175 (232)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCC--hhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHH
Confidence 0 0 122456788889887544444 899999999999999999999999999999875442322333333
Q ss_pred HHHHhccCCcEEEEEEcC
Q 024413 190 TEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 190 ~~~~~~~~~d~vv~vvD~ 207 (268)
.+.+......+++..+|.
T Consensus 176 l~~~~~~~~tii~~sH~~ 193 (232)
T cd03218 176 IKILKDRGIGVLITDHNV 193 (232)
T ss_pred HHHHHHCCCEEEEEeCCH
Confidence 344433334455555554
No 57
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.87 E-value=1.2e-21 Score=166.67 Aligned_cols=145 Identities=14% Similarity=0.015 Sum_probs=101.8
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC---------Cc----------ccccccch-
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM---------TL----------PFAANIDI- 120 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~---------~~----------~~~~~~~~- 120 (268)
.....+++|++++|+|+||||||||+++|+|..+|++|.+++++.+.... .+ +..+++..
T Consensus 18 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~ 97 (201)
T cd03231 18 GLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFW 97 (201)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccccccCCCcCHHHHHHhh
Confidence 34455899999999999999999999999999999999999988664210 01 11111111
Q ss_pred ---hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhccC
Q 024413 121 ---RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTF 197 (268)
Q Consensus 121 ---~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~ 197 (268)
.....+.++++.+++....... +..|||||+||+++|++++.+|+++|+|||+..-+.........+...+....
T Consensus 98 ~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g 175 (201)
T cd03231 98 HADHSDEQVEEALARVGLNGFEDRP--VAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARG 175 (201)
T ss_pred cccccHHHHHHHHHHcCChhhhcCc--hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Confidence 1234567788999997554443 88999999999999999999999999999987543222222223333333334
Q ss_pred CcEEEEEEcC
Q 024413 198 PTVVTYVVDT 207 (268)
Q Consensus 198 ~d~vv~vvD~ 207 (268)
..+|+..+|.
T Consensus 176 ~tiii~sH~~ 185 (201)
T cd03231 176 GMVVLTTHQD 185 (201)
T ss_pred CEEEEEecCc
Confidence 4555655655
No 58
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=1.2e-21 Score=172.67 Aligned_cols=144 Identities=13% Similarity=0.097 Sum_probs=100.6
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC---------CC------cccccccch------
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV---------MT------LPFAANIDI------ 120 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~---------~~------~~~~~~~~~------ 120 (268)
....+.+|++++|+|+||||||||+++|+|+.+|++|.++++|.+... .. .+..+++..
T Consensus 20 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~ 99 (255)
T PRK11248 20 INLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEGLLPWRNVQDNVAFGLQLAG 99 (255)
T ss_pred eeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCccCCCCcHHHHHHhHHHHcC
Confidence 344589999999999999999999999999999999999998765321 00 111112111
Q ss_pred -h---hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc-hhhhhhHHHHHHHHHhc
Q 024413 121 -R---DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE-IFTWSASGAIITEAFAS 195 (268)
Q Consensus 121 -~---~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~-~~~~~~~~~~i~~~~~~ 195 (268)
. ...++.++++.+++....... +..|||||+||+++|++++.+|+++|+|||+..- +.+.......+.+..+.
T Consensus 100 ~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~ 177 (255)
T PRK11248 100 VEKMQRLEIAHQMLKKVGLEGAEKRY--IWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQE 177 (255)
T ss_pred CCHHHHHHHHHHHHHHcCChhHhhCC--hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh
Confidence 0 123467788999997544433 8999999999999999999999999999998754 33322233333322233
Q ss_pred cCCcEEEEEEcC
Q 024413 196 TFPTVVTYVVDT 207 (268)
Q Consensus 196 ~~~d~vv~vvD~ 207 (268)
....+|+..+|.
T Consensus 178 ~g~tviivsH~~ 189 (255)
T PRK11248 178 TGKQVLLITHDI 189 (255)
T ss_pred cCCEEEEEeCCH
Confidence 334566666665
No 59
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.87 E-value=6.2e-22 Score=170.04 Aligned_cols=144 Identities=13% Similarity=0.049 Sum_probs=99.9
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC-------------CC------cccccccch--
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV-------------MT------LPFAANIDI-- 120 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~-------------~~------~~~~~~~~~-- 120 (268)
....+.+|++++|+|+||||||||+++|+|+.+|++|.+++++.+... +. .+..+++..
T Consensus 24 ~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~ 103 (218)
T cd03266 24 VSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFA 103 (218)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHH
Confidence 344588999999999999999999999999999999999998865321 00 111111111
Q ss_pred --------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHH
Q 024413 121 --------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEA 192 (268)
Q Consensus 121 --------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~ 192 (268)
.....+.++++.+++....... +..|||||+||+++|+|++.+|+++|+|||...-+.........+...
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~ 181 (218)
T cd03266 104 GLYGLKGDELTARLEELADRLGMEELLDRR--VGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQ 181 (218)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCHHHHhhh--hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHH
Confidence 0123466788999987544443 899999999999999999999999999999875432222233333333
Q ss_pred HhccCCcEEEEEEcC
Q 024413 193 FASTFPTVVTYVVDT 207 (268)
Q Consensus 193 ~~~~~~d~vv~vvD~ 207 (268)
+......+|+..+|.
T Consensus 182 ~~~~~~tii~~tH~~ 196 (218)
T cd03266 182 LRALGKCILFSTHIM 196 (218)
T ss_pred HHHCCCEEEEEeCCH
Confidence 333334555554554
No 60
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.87 E-value=1e-21 Score=173.26 Aligned_cols=145 Identities=14% Similarity=0.047 Sum_probs=101.0
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCC---------CC------Ccccccccch--h--
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA---------VM------TLPFAANIDI--R-- 121 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~---------~~------~~~~~~~~~~--~-- 121 (268)
.....+.+|++++|+|+||||||||+++|+|+.+|++|.+++.+.+.. .+ ..+..+++.. .
T Consensus 30 ~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~ 109 (257)
T PRK11247 30 QLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQ 109 (257)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHhcccch
Confidence 334458999999999999999999999999999999999988664321 00 1111222211 1
Q ss_pred hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch-hhhhhHHHHHHHHHhccCCcE
Q 024413 122 DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI-FTWSASGAIITEAFASTFPTV 200 (268)
Q Consensus 122 ~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~-~~~~~~~~~i~~~~~~~~~d~ 200 (268)
...++.++++.+++....... +..|||||+||++||++++.+|+++|+|||+..-+ .........+.+..+.....+
T Consensus 110 ~~~~~~~~l~~~gl~~~~~~~--~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tv 187 (257)
T PRK11247 110 WRDAALQALAAVGLADRANEW--PAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTV 187 (257)
T ss_pred HHHHHHHHHHHcCChhHhcCC--hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 123567789999997654444 89999999999999999999999999999987543 332223333333223333456
Q ss_pred EEEEEcC
Q 024413 201 VTYVVDT 207 (268)
Q Consensus 201 vv~vvD~ 207 (268)
++..+|.
T Consensus 188 iivsHd~ 194 (257)
T PRK11247 188 LLVTHDV 194 (257)
T ss_pred EEEeCCH
Confidence 6666665
No 61
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.87 E-value=4.5e-22 Score=169.00 Aligned_cols=134 Identities=15% Similarity=0.125 Sum_probs=92.6
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC---------------------CCcccccccc
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV---------------------MTLPFAANID 119 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~---------------------~~~~~~~~~~ 119 (268)
.....+++|++++|+|+||||||||+++|+|+.++.+|.|.+.|.|... ..++..+|+.
T Consensus 21 gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~ 100 (237)
T COG0410 21 GVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLL 100 (237)
T ss_pred eeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHh
Confidence 3445589999999999999999999999999999999999999998642 2234444443
Q ss_pred hh-----hHH----HHHHHHHHc-CCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHH
Q 024413 120 IR-----DTI----RYKEVMKQF-NLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAII 189 (268)
Q Consensus 120 ~~-----~~~----~~~~~l~~~-~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i 189 (268)
+. +.. .++++.+.| .|.+..+.. ..+|||||+|.++|||||+.+|++++||||+..-.-.-.......
T Consensus 101 ~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~--aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~ 178 (237)
T COG0410 101 LGAYARRDKEAQERDLEEVYELFPRLKERRNQR--AGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEA 178 (237)
T ss_pred hhhhcccccccccccHHHHHHHChhHHHHhcCc--ccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHH
Confidence 21 101 133444443 122223333 678999999999999999999999999999875431122233344
Q ss_pred HHHHhcc
Q 024413 190 TEAFAST 196 (268)
Q Consensus 190 ~~~~~~~ 196 (268)
++.++..
T Consensus 179 i~~l~~~ 185 (237)
T COG0410 179 IKELRKE 185 (237)
T ss_pred HHHHHHc
Confidence 4444443
No 62
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.87 E-value=7.6e-22 Score=181.68 Aligned_cols=128 Identities=14% Similarity=0.133 Sum_probs=95.7
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC------------------------Cccccc
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM------------------------TLPFAA 116 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~------------------------~~~~~~ 116 (268)
...+.+++|++++|+|+||||||||+++|+|+.+|++|.|+++|.+.... ..+..+
T Consensus 11 ~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~e 90 (363)
T TIGR01186 11 DADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQ 90 (363)
T ss_pred eeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHH
Confidence 33445899999999999999999999999999999999999999764311 011112
Q ss_pred ccch----------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCc-chhhhhhH
Q 024413 117 NIDI----------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQI-EIFTWSAS 185 (268)
Q Consensus 117 ~~~~----------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~-~~~~~~~~ 185 (268)
|+.. ....++.++++.++|....... +.+|||||+||++||||++.+|+++|+|||... ++......
T Consensus 91 Ni~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~--p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l 168 (363)
T TIGR01186 91 NTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRY--PDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSM 168 (363)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCC--hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 2211 0123567789999997654444 999999999999999999999999999999764 55443333
Q ss_pred HHHHH
Q 024413 186 GAIIT 190 (268)
Q Consensus 186 ~~~i~ 190 (268)
...+.
T Consensus 169 ~~~l~ 173 (363)
T TIGR01186 169 QDELK 173 (363)
T ss_pred HHHHH
Confidence 33333
No 63
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.87 E-value=8.9e-22 Score=168.51 Aligned_cols=144 Identities=12% Similarity=0.024 Sum_probs=98.7
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC-------------C----------ccccccc
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM-------------T----------LPFAANI 118 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~-------------~----------~~~~~~~ 118 (268)
....+.+|++++|+|+||||||||+++|+|+.+|++|.+++++.+.... . .+..+++
T Consensus 20 ~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l 99 (214)
T cd03292 20 INISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENV 99 (214)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHH
Confidence 3445889999999999999999999999999999999999988653210 0 0111111
Q ss_pred chh----------hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHH
Q 024413 119 DIR----------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAI 188 (268)
Q Consensus 119 ~~~----------~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~ 188 (268)
... ....+.++++.+++....... +..|||||+||++||+|++.+|+++|+|||+..-+.........
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~ 177 (214)
T cd03292 100 AFALEVTGVPPREIRKRVPAALELVGLSHKHRAL--PAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMN 177 (214)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC--hhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHH
Confidence 110 112456788888887544433 88999999999999999999999999999987543222223333
Q ss_pred HHHHHhccCCcEEEEEEcC
Q 024413 189 ITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 189 i~~~~~~~~~d~vv~vvD~ 207 (268)
+.+.++.....+++..+|.
T Consensus 178 ~l~~~~~~~~tiiivtH~~ 196 (214)
T cd03292 178 LLKKINKAGTTVVVATHAK 196 (214)
T ss_pred HHHHHHHcCCEEEEEeCCH
Confidence 3333333334445544554
No 64
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.87 E-value=8.3e-22 Score=171.97 Aligned_cols=145 Identities=13% Similarity=0.053 Sum_probs=99.3
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC-------------C----------Ccccccc
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV-------------M----------TLPFAAN 117 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~-------------~----------~~~~~~~ 117 (268)
.....+.+|++++|+||||||||||+++|+|+.+|++|.++++|.+... . ..+..++
T Consensus 20 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~ 99 (243)
T TIGR02315 20 NINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLEN 99 (243)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccHHHH
Confidence 3444589999999999999999999999999999999999998865310 0 0111111
Q ss_pred cch------------------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 118 IDI------------------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 118 ~~~------------------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
+.. ....++.++++.+++....... +..|||||+||++||+|++.+|+++|+|||+..-+
T Consensus 100 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD 177 (243)
T TIGR02315 100 VLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQR--ADQLSGGQQQRVAIARALAQQPDLILADEPIASLD 177 (243)
T ss_pred HhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCC--cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 110 0123466788889887544433 88999999999999999999999999999987543
Q ss_pred hhhhhHHHHHHHHHhcc-CCcEEEEEEcC
Q 024413 180 FTWSASGAIITEAFAST-FPTVVTYVVDT 207 (268)
Q Consensus 180 ~~~~~~~~~i~~~~~~~-~~d~vv~vvD~ 207 (268)
.........+...+... ...+++..+|.
T Consensus 178 ~~~~~~l~~~l~~~~~~~~~tiii~tH~~ 206 (243)
T TIGR02315 178 PKTSKQVMDYLKRINKEDGITVIINLHQV 206 (243)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 22222223333333322 34555555554
No 65
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.87 E-value=9e-22 Score=168.47 Aligned_cols=145 Identities=14% Similarity=0.055 Sum_probs=100.0
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC--------C----------cccccccch--
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM--------T----------LPFAANIDI-- 120 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~--------~----------~~~~~~~~~-- 120 (268)
.....+++|++++|+|+||||||||+++|+|..+|++|.+++++.+.... . .+..+++..
T Consensus 18 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~ 97 (213)
T cd03301 18 DLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGL 97 (213)
T ss_pred ceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHHHHH
Confidence 33445889999999999999999999999999999999999988653210 0 111111111
Q ss_pred ------h--hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHH
Q 024413 121 ------R--DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEA 192 (268)
Q Consensus 121 ------~--~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~ 192 (268)
. ....+.++++.+++....... +..|||||+||+++|++++.+|+++|+|||...-+.........+...
T Consensus 98 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 175 (213)
T cd03301 98 KLRKVPKDEIDERVREVAELLQIEHLLDRK--PKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKR 175 (213)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCCHHHHhCC--hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 0 122456678889887544444 899999999999999999999999999999875432222233333333
Q ss_pred Hhcc-CCcEEEEEEcC
Q 024413 193 FAST-FPTVVTYVVDT 207 (268)
Q Consensus 193 ~~~~-~~d~vv~vvD~ 207 (268)
++.. ...+++..+|.
T Consensus 176 ~~~~~~~tvi~~sH~~ 191 (213)
T cd03301 176 LQQRLGTTTIYVTHDQ 191 (213)
T ss_pred HHHHcCCEEEEEeCCH
Confidence 3332 34555555554
No 66
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=1.1e-21 Score=170.91 Aligned_cols=144 Identities=12% Similarity=0.053 Sum_probs=99.1
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC-------------C----------ccccccc
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM-------------T----------LPFAANI 118 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~-------------~----------~~~~~~~ 118 (268)
....+.+|++++|+|+||||||||+++|+|+.+|++|.++++|.+.... . .+..+++
T Consensus 20 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l 99 (241)
T cd03256 20 VSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENV 99 (241)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcHHHHH
Confidence 3445899999999999999999999999999999999999988653210 0 1111111
Q ss_pred ch------------------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchh
Q 024413 119 DI------------------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIF 180 (268)
Q Consensus 119 ~~------------------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~ 180 (268)
.. .....+.++++.+++....... +..|||||+||++||+|++.+|+++|+|||+..-+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~ 177 (241)
T cd03256 100 LSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQR--ADQLSGGQQQRVAIARALMQQPKLILADEPVASLDP 177 (241)
T ss_pred HhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCC--cccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCH
Confidence 10 0122456678889887544433 889999999999999999999999999999875432
Q ss_pred hhhhHHHHHHHHHhc-cCCcEEEEEEcC
Q 024413 181 TWSASGAIITEAFAS-TFPTVVTYVVDT 207 (268)
Q Consensus 181 ~~~~~~~~i~~~~~~-~~~d~vv~vvD~ 207 (268)
........+...+.. ....+|+..+|.
T Consensus 178 ~~~~~l~~~l~~~~~~~~~tii~~tH~~ 205 (241)
T cd03256 178 ASSRQVMDLLKRINREEGITVIVSLHQV 205 (241)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 222222233333332 234555555654
No 67
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.87 E-value=1.1e-21 Score=164.09 Aligned_cols=139 Identities=15% Similarity=0.084 Sum_probs=97.1
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchh-hHHHHHHHHHHcCCCCCCC
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIR-DTIRYKEVMKQFNLGPNGG 140 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~l~~~~~ 140 (268)
....+++|++++|+|+||||||||+++|+|+.+|++|.+++++.+..... .. ... ....+..+++.+++.....
T Consensus 18 ~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~--~~---~~~~~i~~~~q~l~~~gl~~~~~ 92 (180)
T cd03214 18 LSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLS--PK---ELARKIAYVPQALELLGLAHLAD 92 (180)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCC--HH---HHHHHHhHHHHHHHHcCCHhHhc
Confidence 34458899999999999999999999999999999999999887652111 00 001 1111223778888875443
Q ss_pred cccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhcc-CCcEEEEEEcC
Q 024413 141 ILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAST-FPTVVTYVVDT 207 (268)
Q Consensus 141 ~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~-~~d~vv~vvD~ 207 (268)
.. +..||+||+||+++|++++.+|+++|+|||...-+.........+...++.. ...+++..+|.
T Consensus 93 ~~--~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~ 158 (180)
T cd03214 93 RP--FNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDL 158 (180)
T ss_pred CC--cccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 33 8899999999999999999999999999998754322222333333444333 34555554554
No 68
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.87 E-value=9.1e-22 Score=182.02 Aligned_cols=116 Identities=13% Similarity=0.057 Sum_probs=90.0
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC------------C------Ccccccccchh--
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV------------M------TLPFAANIDIR-- 121 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~------------~------~~~~~~~~~~~-- 121 (268)
....+.+|++++|+||||||||||+++|+|+.+|++|.|+++|.+... + ..+..+++...
T Consensus 22 vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~ 101 (369)
T PRK11000 22 INLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLK 101 (369)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHh
Confidence 344588999999999999999999999999999999999998865421 0 11111222110
Q ss_pred --------hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 122 --------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 122 --------~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
...++.++++.++|....... +..|||||+||++||+|++.+|+++|+|||....+
T Consensus 102 ~~~~~~~~~~~~~~~~l~~lgL~~~~~~~--~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD 165 (369)
T PRK11000 102 LAGAKKEEINQRVNQVAEVLQLAHLLDRK--PKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165 (369)
T ss_pred hcCCCHHHHHHHHHHHHHHcCChhhhcCC--hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 123567789999997654444 89999999999999999999999999999987543
No 69
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.87 E-value=9.9e-22 Score=181.12 Aligned_cols=115 Identities=19% Similarity=0.211 Sum_probs=91.2
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcc--cEEEEecccCCC------------------CCcccccccch-
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRN--IRGYVMNLDPAV------------------MTLPFAANIDI- 120 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~--g~i~i~~~~~~~------------------~~~~~~~~~~~- 120 (268)
....+.+|++++|+||||||||||+++|+|+.+|++ |.++++|.+... ..++..+|+..
T Consensus 24 vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~ 103 (362)
T TIGR03258 24 LSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFG 103 (362)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHH
Confidence 344588999999999999999999999999999999 999998876421 01122222211
Q ss_pred -h--------hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc
Q 024413 121 -R--------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE 178 (268)
Q Consensus 121 -~--------~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~ 178 (268)
+ ...++.++++.++|....... +.+|||||+||++||||++.+|+++|+|||....
T Consensus 104 l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~--~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~L 168 (362)
T TIGR03258 104 LRAQKMPKADIAERVADALKLVGLGDAAAHL--PAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSAL 168 (362)
T ss_pred HHHcCCCHHHHHHHHHHHHHhcCCCchhhCC--hhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccC
Confidence 0 123577889999998765555 9999999999999999999999999999998754
No 70
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.87 E-value=9.6e-22 Score=177.37 Aligned_cols=116 Identities=11% Similarity=0.104 Sum_probs=88.6
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC---------C----------cccccccchh
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM---------T----------LPFAANIDIR 121 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~---------~----------~~~~~~~~~~ 121 (268)
.....+++|++++|+||||||||||+++|+|+.+|++|.++++|.+.... . .+..+++...
T Consensus 22 ~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~ 101 (303)
T TIGR01288 22 DLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVF 101 (303)
T ss_pred ceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHH
Confidence 34455899999999999999999999999999999999999988653210 0 1111111100
Q ss_pred ------h----HHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc
Q 024413 122 ------D----TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE 178 (268)
Q Consensus 122 ------~----~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~ 178 (268)
. ...+.++++.+++....... +..|||||+||++||+|++.+|+++|+|||+..-
T Consensus 102 ~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~--~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gL 166 (303)
T TIGR01288 102 GRYFGMSTREIEAVIPSLLEFARLESKADVR--VALLSGGMKRRLTLARALINDPQLLILDEPTTGL 166 (303)
T ss_pred HHHcCCCHHHHHHHHHHHHHHCCChhHhcCc--hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 0 12355678889887654444 8999999999999999999999999999998754
No 71
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.87 E-value=1.1e-21 Score=181.43 Aligned_cols=116 Identities=14% Similarity=0.088 Sum_probs=91.2
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC------------C------Ccccccccch--h
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV------------M------TLPFAANIDI--R 121 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~------------~------~~~~~~~~~~--~ 121 (268)
....+.+|++++|+||||||||||+++|+|+.+|++|.|+++|.+... . .++..+|+.. +
T Consensus 33 vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~ 112 (375)
T PRK09452 33 LDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLR 112 (375)
T ss_pred eEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHh
Confidence 344588999999999999999999999999999999999999876421 0 1112222211 0
Q ss_pred --------hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 122 --------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 122 --------~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
...++.++++.++|....... +.+|||||+||++||||++.+|+++|+|||....+
T Consensus 113 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD 176 (375)
T PRK09452 113 MQKTPAAEITPRVMEALRMVQLEEFAQRK--PHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALD 176 (375)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCchhhhCC--hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCC
Confidence 023567789999998665555 99999999999999999999999999999987543
No 72
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=1.2e-21 Score=170.77 Aligned_cols=145 Identities=14% Similarity=0.033 Sum_probs=99.4
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC--------C----------Ccccccccchh-
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV--------M----------TLPFAANIDIR- 121 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~--------~----------~~~~~~~~~~~- 121 (268)
.....+.+|++++|+||||||||||+++|+|+.+|++|.++++|.+... . ..+..+++...
T Consensus 20 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~ 99 (239)
T cd03296 20 DVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGL 99 (239)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHHhhhh
Confidence 3344588999999999999999999999999999999999998865311 0 01111111110
Q ss_pred ---------h----HHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHH
Q 024413 122 ---------D----TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAI 188 (268)
Q Consensus 122 ---------~----~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~ 188 (268)
. ...+.++++.+++....... +..||+||+||++||+|++.+|+++|+|||...-+.........
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~ 177 (239)
T cd03296 100 RVKPRSERPPEAEIRAKVHELLKLVQLDWLADRY--PAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRR 177 (239)
T ss_pred hhccccccCCHHHHHHHHHHHHHHcCChhhhhcC--hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 0 12356678889987544444 89999999999999999999999999999987543222222223
Q ss_pred HHHHHhcc-CCcEEEEEEcC
Q 024413 189 ITEAFAST-FPTVVTYVVDT 207 (268)
Q Consensus 189 i~~~~~~~-~~d~vv~vvD~ 207 (268)
+...++.. ...+|+..+|.
T Consensus 178 ~l~~~~~~~~~tvii~sH~~ 197 (239)
T cd03296 178 WLRRLHDELHVTTVFVTHDQ 197 (239)
T ss_pred HHHHHHHHcCCEEEEEeCCH
Confidence 33333332 34555555554
No 73
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.87 E-value=1.3e-21 Score=179.94 Aligned_cols=127 Identities=13% Similarity=0.080 Sum_probs=94.7
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC------------C------Ccccccccch--h
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV------------M------TLPFAANIDI--R 121 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~------------~------~~~~~~~~~~--~ 121 (268)
....+.+|++++|+||||||||||+++|+|+.+|++|.|+++|.+... + ..+..+|+.. .
T Consensus 21 isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~ 100 (353)
T PRK10851 21 ISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLT 100 (353)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhh
Confidence 344588999999999999999999999999999999999999876421 0 1111122211 0
Q ss_pred ------------hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCc-chhhhhhHHHH
Q 024413 122 ------------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQI-EIFTWSASGAI 188 (268)
Q Consensus 122 ------------~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~-~~~~~~~~~~~ 188 (268)
...++.++++.++|....... +.+|||||+||++||||++.+|+++|+|||... |+.........
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~--~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~ 178 (353)
T PRK10851 101 VLPRRERPNAAAIKAKVTQLLEMVQLAHLADRY--PAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRW 178 (353)
T ss_pred hcccccCCCHHHHHHHHHHHHHHcCCchhhhCC--hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH
Confidence 123567789999997655544 999999999999999999999999999999775 44333333333
Q ss_pred HH
Q 024413 189 IT 190 (268)
Q Consensus 189 i~ 190 (268)
+.
T Consensus 179 L~ 180 (353)
T PRK10851 179 LR 180 (353)
T ss_pred HH
Confidence 33
No 74
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=1.4e-21 Score=167.17 Aligned_cols=143 Identities=15% Similarity=0.097 Sum_probs=99.4
Q ss_pred cccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC------------C------Ccccccccch----
Q 024413 63 INFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV------------M------TLPFAANIDI---- 120 (268)
Q Consensus 63 ~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~------------~------~~~~~~~~~~---- 120 (268)
...+.+|++++|+||||||||||+++|+|+.+|++|.++++|.+... . ..+..+++..
T Consensus 18 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~ 97 (211)
T cd03298 18 DLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSP 97 (211)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhccccc
Confidence 34588999999999999999999999999999999999998865311 0 0111112210
Q ss_pred ------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHh
Q 024413 121 ------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFA 194 (268)
Q Consensus 121 ------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~ 194 (268)
.....+.++++.+++....... +..||+||+||++||+|++.+|+++|+|||...-+.........+...+.
T Consensus 98 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 175 (211)
T cd03298 98 GLKLTAEDRQAIEVALARVGLAGLEKRL--PGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLH 175 (211)
T ss_pred ccCccHHHHHHHHHHHHHcCCHHHHhCC--cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 1123567788999987544443 88999999999999999999999999999987543222222223333333
Q ss_pred cc-CCcEEEEEEcC
Q 024413 195 ST-FPTVVTYVVDT 207 (268)
Q Consensus 195 ~~-~~d~vv~vvD~ 207 (268)
.. ...+++..+|.
T Consensus 176 ~~~~~tii~~sH~~ 189 (211)
T cd03298 176 AETKMTVLMVTHQP 189 (211)
T ss_pred HhcCCEEEEEecCH
Confidence 32 34555555554
No 75
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.87 E-value=1.7e-21 Score=166.40 Aligned_cols=145 Identities=12% Similarity=0.057 Sum_probs=100.8
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC-------CCc----------ccccccch---
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV-------MTL----------PFAANIDI--- 120 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~-------~~~----------~~~~~~~~--- 120 (268)
.....+++|++++|+|+||||||||+++|+|..++++|.+++++.+... ..+ +..+++..
T Consensus 20 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~ 99 (207)
T PRK13539 20 GLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAA 99 (207)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHHHHHHHH
Confidence 3444589999999999999999999999999999999999998865311 001 11111111
Q ss_pred ---hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch-hhhhhHHHHHHHHHhcc
Q 024413 121 ---RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI-FTWSASGAIITEAFAST 196 (268)
Q Consensus 121 ---~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~-~~~~~~~~~i~~~~~~~ 196 (268)
.....+.++++.+++..... ..+..||+||+||++||++++.+|+++|+|||+..-+ ....... .+...++..
T Consensus 100 ~~~~~~~~~~~~l~~~~l~~~~~--~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~-~~l~~~~~~ 176 (207)
T PRK13539 100 FLGGEELDIAAALEAVGLAPLAH--LPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFA-ELIRAHLAQ 176 (207)
T ss_pred hcCCcHHHHHHHHHHcCCHHHHc--CChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHC
Confidence 11234677889999975433 3388999999999999999999999999999987543 3223233 333333333
Q ss_pred CCcEEEEEEcCC
Q 024413 197 FPTVVTYVVDTP 208 (268)
Q Consensus 197 ~~d~vv~vvD~~ 208 (268)
...+++..+|..
T Consensus 177 ~~tiii~sH~~~ 188 (207)
T PRK13539 177 GGIVIAATHIPL 188 (207)
T ss_pred CCEEEEEeCCch
Confidence 445555556653
No 76
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.87 E-value=1.8e-21 Score=167.40 Aligned_cols=117 Identities=15% Similarity=0.088 Sum_probs=89.0
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC---------CC----------cccccccch-
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV---------MT----------LPFAANIDI- 120 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~---------~~----------~~~~~~~~~- 120 (268)
.....+++|++++|+||||||||||+++|+|+.+|++|.++++|.+... .. .+..+++..
T Consensus 20 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~ 99 (220)
T cd03263 20 DLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFY 99 (220)
T ss_pred ceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHHHHHH
Confidence 3344589999999999999999999999999999999999998875321 00 111111111
Q ss_pred ------h---hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 121 ------R---DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 121 ------~---~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
. ...++.++++.+++....... +..||+||+||++||++++.+|+++|+|||...-+
T Consensus 100 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD 165 (220)
T cd03263 100 ARLKGLPKSEIKEEVELLLRVLGLTDKANKR--ARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLD 165 (220)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCHHHHhCh--hhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCC
Confidence 0 113456788889987544433 89999999999999999999999999999987543
No 77
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.87 E-value=8.9e-22 Score=171.36 Aligned_cols=141 Identities=12% Similarity=0.025 Sum_probs=107.6
Q ss_pred CCcccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCC
Q 024413 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPN 138 (268)
Q Consensus 59 ~~~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 138 (268)
.....+.+++|++++|+|.||||||||-++|+|++.|++|.|++.|.+..... ......++.++++.+|+.+.
T Consensus 29 vd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-------~~~~~~~v~elL~~Vgl~~~ 101 (268)
T COG4608 29 VDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-------KEERRERVLELLEKVGLPEE 101 (268)
T ss_pred ecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc-------hhHHHHHHHHHHHHhCCCHH
Confidence 44556679999999999999999999999999999999999999998753221 11234568899999997764
Q ss_pred CCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCC-cEEEEEEcC
Q 024413 139 GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFP-TVVTYVVDT 207 (268)
Q Consensus 139 ~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~-d~vv~vvD~ 207 (268)
... .++++|||||+||+.||||++.+|++++.|||.-..+.+-....-.+...++.... ..+...||-
T Consensus 102 ~~~-ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL 170 (268)
T COG4608 102 FLY-RYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDL 170 (268)
T ss_pred Hhh-cCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEH
Confidence 333 34999999999999999999999999999999887664444444455555544433 444444554
No 78
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=1.6e-21 Score=178.79 Aligned_cols=116 Identities=15% Similarity=0.139 Sum_probs=89.7
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC-------------C----------cccccc
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM-------------T----------LPFAAN 117 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~-------------~----------~~~~~~ 117 (268)
.....+++|++++|+||||||||||+++|+|+.+|++|.++++|.++... . .+..++
T Consensus 23 ~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~en 102 (343)
T PRK11153 23 NVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDN 102 (343)
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHH
Confidence 33455899999999999999999999999999999999999998754210 0 111111
Q ss_pred cchh----------hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc
Q 024413 118 IDIR----------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE 178 (268)
Q Consensus 118 ~~~~----------~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~ 178 (268)
+... ...++.++++.++|....... +..|||||+||++||+|++.+|+++|+|||+...
T Consensus 103 i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~--~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~L 171 (343)
T PRK11153 103 VALPLELAGTPKAEIKARVTELLELVGLSDKADRY--PAQLSGGQKQRVAIARALASNPKVLLCDEATSAL 171 (343)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCC--hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccC
Confidence 1110 123466788999997554444 8999999999999999999999999999998754
No 79
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=1.6e-21 Score=173.47 Aligned_cols=145 Identities=14% Similarity=0.017 Sum_probs=100.1
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC----------CCcc-----------cccccc
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV----------MTLP-----------FAANID 119 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~----------~~~~-----------~~~~~~ 119 (268)
.....+.+|++++|+|+||||||||+++|+|+.+|++|.|+++|.+... ..++ ..+++.
T Consensus 23 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~ 102 (274)
T PRK13647 23 GLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVA 102 (274)
T ss_pred eEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHHHHHH
Confidence 3344589999999999999999999999999999999999999865421 0011 111111
Q ss_pred h----------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHH
Q 024413 120 I----------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAII 189 (268)
Q Consensus 120 ~----------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i 189 (268)
. ....++.++++.++|....... +..|||||+||++||+|++.+|+++|+|||+..-+.........+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~--~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~ 180 (274)
T PRK13647 103 FGPVNMGLDKDEVERRVEEALKAVRMWDFRDKP--PYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEI 180 (274)
T ss_pred hhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCC--hhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHH
Confidence 1 0123466788999997554444 899999999999999999999999999999875432222233333
Q ss_pred HHHHhccCCcEEEEEEcC
Q 024413 190 TEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 190 ~~~~~~~~~d~vv~vvD~ 207 (268)
...++.....+++..+|.
T Consensus 181 l~~~~~~g~tili~tH~~ 198 (274)
T PRK13647 181 LDRLHNQGKTVIVATHDV 198 (274)
T ss_pred HHHHHHCCCEEEEEeCCH
Confidence 333332233444444444
No 80
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=1.7e-21 Score=180.54 Aligned_cols=115 Identities=17% Similarity=0.149 Sum_probs=91.0
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC------------------CCcccccccch--h
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV------------------MTLPFAANIDI--R 121 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~------------------~~~~~~~~~~~--~ 121 (268)
....+.+|++++|+||||||||||+++|+|+..|++|.|+++|.+... ..++..+|+.. +
T Consensus 38 vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~ 117 (377)
T PRK11607 38 VSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLK 117 (377)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHH
Confidence 344588999999999999999999999999999999999998876421 01122222221 0
Q ss_pred --------hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc
Q 024413 122 --------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE 178 (268)
Q Consensus 122 --------~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~ 178 (268)
...++.++++.++|....... +..|||||+||++||||++.+|+++|+|||....
T Consensus 118 ~~~~~~~~~~~~v~~~l~~l~L~~~~~~~--~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~L 180 (377)
T PRK11607 118 QDKLPKAEIASRVNEMLGLVHMQEFAKRK--PHQLSGGQRQRVALARSLAKRPKLLLLDEPMGAL 180 (377)
T ss_pred HcCCCHHHHHHHHHHHHHHcCCchhhcCC--hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 123567889999998665554 9999999999999999999999999999997754
No 81
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=2e-21 Score=168.67 Aligned_cols=145 Identities=13% Similarity=0.069 Sum_probs=99.2
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC-------------C----------cccccc
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM-------------T----------LPFAAN 117 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~-------------~----------~~~~~~ 117 (268)
.....+.+|++++|+||||||||||+++|+|+.+|++|.++++|.+.... . .+..++
T Consensus 23 ~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~ 102 (233)
T cd03258 23 DVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFEN 102 (233)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHH
Confidence 33455899999999999999999999999999999999999988753210 0 011111
Q ss_pred cch----h------hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHH
Q 024413 118 IDI----R------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGA 187 (268)
Q Consensus 118 ~~~----~------~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~ 187 (268)
+.. . ....+.++++.+++....... +..|||||+||++||++++.+|+++|+|||...-+........
T Consensus 103 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~ 180 (233)
T cd03258 103 VALPLEIAGVPKAEIEERVLELLELVGLEDKADAY--PAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSIL 180 (233)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcC--hhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHH
Confidence 110 0 122456788899987554444 8999999999999999999999999999998754322222222
Q ss_pred HHHHHHhcc-CCcEEEEEEcC
Q 024413 188 IITEAFAST-FPTVVTYVVDT 207 (268)
Q Consensus 188 ~i~~~~~~~-~~d~vv~vvD~ 207 (268)
.+...++.. ...+++..+|.
T Consensus 181 ~~l~~~~~~~~~tvii~sH~~ 201 (233)
T cd03258 181 ALLRDINRELGLTIVLITHEM 201 (233)
T ss_pred HHHHHHHHHcCCEEEEEeCCH
Confidence 333333332 34555554544
No 82
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.87 E-value=2.5e-21 Score=168.47 Aligned_cols=144 Identities=13% Similarity=0.033 Sum_probs=99.6
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC---------CCc----------ccccccch--
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV---------MTL----------PFAANIDI-- 120 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~---------~~~----------~~~~~~~~-- 120 (268)
....+.+|++++|+|+||||||||+++|+|+.+|++|.++++|.+... ..+ +..+++..
T Consensus 20 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~ 99 (236)
T TIGR03864 20 VSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHA 99 (236)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHH
Confidence 344588999999999999999999999999999999999998865311 001 11111111
Q ss_pred --h------hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHH
Q 024413 121 --R------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEA 192 (268)
Q Consensus 121 --~------~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~ 192 (268)
. ....+.++++.+++....... +..|||||+||++||+|++.+|+++|+|||...-+.........+...
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 177 (236)
T TIGR03864 100 ALHGLSRAEARERIAALLARLGLAERADDK--VRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRA 177 (236)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCChhhhcCC--hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHH
Confidence 0 122456788889987554444 899999999999999999999999999999875432222223333333
Q ss_pred Hhc-cCCcEEEEEEcC
Q 024413 193 FAS-TFPTVVTYVVDT 207 (268)
Q Consensus 193 ~~~-~~~d~vv~vvD~ 207 (268)
++. ....+++..+|.
T Consensus 178 ~~~~~~~tiii~sH~~ 193 (236)
T TIGR03864 178 LCRDQGLSVLWATHLV 193 (236)
T ss_pred HHHhCCCEEEEEecCh
Confidence 332 334555555555
No 83
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=1.5e-21 Score=173.19 Aligned_cols=145 Identities=15% Similarity=0.069 Sum_probs=99.8
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC-----------C---C----------ccccc
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV-----------M---T----------LPFAA 116 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~-----------~---~----------~~~~~ 116 (268)
.....+.+|++++|+|+||||||||+++|+|+.+|++|.++++|.+... . . .+..+
T Consensus 42 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e 121 (269)
T cd03294 42 DVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLE 121 (269)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHH
Confidence 4445589999999999999999999999999999999999998865321 0 0 01111
Q ss_pred ccch-------h---hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHH
Q 024413 117 NIDI-------R---DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASG 186 (268)
Q Consensus 117 ~~~~-------~---~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~ 186 (268)
++.. . ....+.++++.++|....... +..|||||+||++||+|++.+|+++|+|||+..-+.......
T Consensus 122 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l 199 (269)
T cd03294 122 NVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKY--PDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREM 199 (269)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCC--cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHH
Confidence 1111 0 112456788899987544444 889999999999999999999999999999875432222223
Q ss_pred HHHHHHHhcc-CCcEEEEEEcC
Q 024413 187 AIITEAFAST-FPTVVTYVVDT 207 (268)
Q Consensus 187 ~~i~~~~~~~-~~d~vv~vvD~ 207 (268)
..+...+... ...+++..+|.
T Consensus 200 ~~~l~~~~~~~g~tiii~tH~~ 221 (269)
T cd03294 200 QDELLRLQAELQKTIVFITHDL 221 (269)
T ss_pred HHHHHHHHHhcCCEEEEEeCCH
Confidence 3333333322 34555555554
No 84
>PRK10908 cell division protein FtsE; Provisional
Probab=99.87 E-value=2.3e-21 Score=167.07 Aligned_cols=144 Identities=14% Similarity=0.065 Sum_probs=98.7
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC-------------CCccc----------cccc
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV-------------MTLPF----------AANI 118 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~-------------~~~~~----------~~~~ 118 (268)
....+++|++++|+|+||||||||+++|+|+.+|++|.|++.|.+... ..++. .+++
T Consensus 21 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l 100 (222)
T PRK10908 21 VTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNV 100 (222)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCccccccccHHHHH
Confidence 344589999999999999999999999999999999999998865321 00111 1111
Q ss_pred chh----------hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHH
Q 024413 119 DIR----------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAI 188 (268)
Q Consensus 119 ~~~----------~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~ 188 (268)
... ....+.++++.+++....... +..||+||+||+++|+|++.+|+++|+|||+..-+.........
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~ 178 (222)
T PRK10908 101 AIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNF--PIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILR 178 (222)
T ss_pred HhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCC--chhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHH
Confidence 110 012356788889887543333 88999999999999999999999999999987543222222223
Q ss_pred HHHHHhccCCcEEEEEEcC
Q 024413 189 ITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 189 i~~~~~~~~~d~vv~vvD~ 207 (268)
+...++.....+++..+|.
T Consensus 179 ~l~~~~~~~~tiii~sH~~ 197 (222)
T PRK10908 179 LFEEFNRVGVTVLMATHDI 197 (222)
T ss_pred HHHHHHHCCCEEEEEeCCH
Confidence 3333433334555555554
No 85
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.86 E-value=2.2e-21 Score=167.87 Aligned_cols=144 Identities=15% Similarity=0.085 Sum_probs=99.7
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC--------------CCc----------ccccc
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV--------------MTL----------PFAAN 117 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~--------------~~~----------~~~~~ 117 (268)
....+.+|++++|+|+||||||||+++|+|+++|++|.++++|.+... ..+ +..++
T Consensus 29 ~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~ 108 (228)
T PRK10584 29 VELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALEN 108 (228)
T ss_pred cEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHH
Confidence 344589999999999999999999999999999999999998864321 000 11111
Q ss_pred cch----------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHH
Q 024413 118 IDI----------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGA 187 (268)
Q Consensus 118 ~~~----------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~ 187 (268)
+.. ....++.++++.+++....... +..|||||+||++||++++.+|+++|+|||+..-+........
T Consensus 109 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~ 186 (228)
T PRK10584 109 VELPALLRGESSRQSRNGAKALLEQLGLGKRLDHL--PAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIA 186 (228)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCC--hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH
Confidence 110 0123466788899987544333 8899999999999999999999999999998754322222333
Q ss_pred HHHHHHhcc-CCcEEEEEEcC
Q 024413 188 IITEAFAST-FPTVVTYVVDT 207 (268)
Q Consensus 188 ~i~~~~~~~-~~d~vv~vvD~ 207 (268)
.+...++.. ...+++..+|.
T Consensus 187 ~~l~~~~~~~~~tii~~sH~~ 207 (228)
T PRK10584 187 DLLFSLNREHGTTLILVTHDL 207 (228)
T ss_pred HHHHHHHHhcCCEEEEEecCH
Confidence 333333333 34555555564
No 86
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.86 E-value=1.9e-21 Score=163.10 Aligned_cols=184 Identities=14% Similarity=0.079 Sum_probs=127.4
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC----------Ccccccccc-----------
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM----------TLPFAANID----------- 119 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~----------~~~~~~~~~----------- 119 (268)
......++|++.+|+||||||||||++.|+|...|++|++.++|.+.... -+++...+.
T Consensus 19 ~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~m 98 (259)
T COG4559 19 GVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQM 98 (259)
T ss_pred CcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHHHHHh
Confidence 33445899999999999999999999999999999999999999875321 011111110
Q ss_pred -----------hhhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhc------CCCEEEEeCCCCcchhhh
Q 024413 120 -----------IRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRAD------HLDYVLVDTPGQIEIFTW 182 (268)
Q Consensus 120 -----------~~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~------~~~illlDePG~~~~~~~ 182 (268)
.++...++..|...++....... ...||||++||+.+||.|.+ +++++|+|||+...+-.+
T Consensus 99 Gr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~--y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~H 176 (259)
T COG4559 99 GRIPHRSGREPEEDERIAAQALAATDLSGLAGRD--YRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAH 176 (259)
T ss_pred cccccccCCCchhhHHHHHHHHHHcChhhhhccc--hhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHH
Confidence 02233466788888887766666 67899999999999999975 445999999998766566
Q ss_pred hhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeecCCCcCChhhhhhhhhh
Q 024413 183 SASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEVQFF 255 (268)
Q Consensus 183 ~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~ 255 (268)
......+.+.+......++++++|-.......| +.+...+-.++.-..-.|..+++.+...+..
T Consensus 177 Q~~tl~laR~la~~g~~V~~VLHDLNLAA~YaD---------rivll~~Grv~a~g~p~~vlt~Etl~~vyg~ 240 (259)
T COG4559 177 QHHTLRLARQLAREGGAVLAVLHDLNLAAQYAD---------RIVLLHQGRVIASGSPQDVLTDETLERVYGA 240 (259)
T ss_pred HHHHHHHHHHHHhcCCcEEEEEccchHHHHhhh---------eeeeeeCCeEeecCCHHHhcCHHHHHHHhCC
Confidence 666667777777777788888888744322222 1122223334445555666666655555443
No 87
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=2.4e-21 Score=180.40 Aligned_cols=127 Identities=14% Similarity=0.149 Sum_probs=94.2
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC--------------CC----------ccccc
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV--------------MT----------LPFAA 116 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~--------------~~----------~~~~~ 116 (268)
...+.+++|++++|+||||||||||+++|+|+++|++|.|+++|.+... .. .+..+
T Consensus 46 ~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~e 125 (400)
T PRK10070 46 DASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLD 125 (400)
T ss_pred eEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHH
Confidence 4455589999999999999999999999999999999999998875321 00 11111
Q ss_pred ccch----------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCc-chhhhhhH
Q 024413 117 NIDI----------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQI-EIFTWSAS 185 (268)
Q Consensus 117 ~~~~----------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~-~~~~~~~~ 185 (268)
++.. ....++.++++.++|....... +.+|||||+||++||+|++.+|+++|+|||+.. ++......
T Consensus 126 nl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~--~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l 203 (400)
T PRK10070 126 NTAFGMELAGINAEERREKALDALRQVGLENYAHSY--PDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEM 203 (400)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcC--cccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHH
Confidence 1111 0123466789999997655444 899999999999999999999999999999875 44333333
Q ss_pred HHHH
Q 024413 186 GAII 189 (268)
Q Consensus 186 ~~~i 189 (268)
...+
T Consensus 204 ~~~L 207 (400)
T PRK10070 204 QDEL 207 (400)
T ss_pred HHHH
Confidence 3333
No 88
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=2.8e-21 Score=165.30 Aligned_cols=142 Identities=15% Similarity=0.072 Sum_probs=97.1
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC-------------CC------cccccccchh-
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV-------------MT------LPFAANIDIR- 121 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~-------------~~------~~~~~~~~~~- 121 (268)
....+++| +++|+||||||||||+++|+|+++|++|.++++|.+... .. .+..+++...
T Consensus 19 vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~ 97 (211)
T cd03264 19 VSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIA 97 (211)
T ss_pred eeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHHHHHHH
Confidence 34447788 999999999999999999999999999999998865321 00 1111111110
Q ss_pred ---------hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHH
Q 024413 122 ---------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEA 192 (268)
Q Consensus 122 ---------~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~ 192 (268)
....+.++++.+++...... .+..|||||+||+++|+|++.+|+++|+|||+..-+.........+.+.
T Consensus 98 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 175 (211)
T cd03264 98 WLKGIPSKEVKARVDEVLELVNLGDRAKK--KIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSE 175 (211)
T ss_pred HHhCCCHHHHHHHHHHHHHHCCCHHHHhC--chhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 02345678888998754433 3899999999999999999999999999999875432322333333344
Q ss_pred HhccCCcEEEEEEcC
Q 024413 193 FASTFPTVVTYVVDT 207 (268)
Q Consensus 193 ~~~~~~d~vv~vvD~ 207 (268)
++.. ..+++..+|.
T Consensus 176 ~~~~-~tii~vsH~~ 189 (211)
T cd03264 176 LGED-RIVILSTHIV 189 (211)
T ss_pred HhCC-CEEEEEcCCH
Confidence 4332 4444444444
No 89
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=2.4e-21 Score=173.57 Aligned_cols=144 Identities=10% Similarity=0.004 Sum_probs=98.7
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC--------------CCcccc-----------
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV--------------MTLPFA----------- 115 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~--------------~~~~~~----------- 115 (268)
.....+++|++++|+|+||||||||+++|+|+.+|++|.++++|.++.. ..++..
T Consensus 25 ~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~ 104 (287)
T PRK13641 25 NISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVL 104 (287)
T ss_pred eeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhccchHH
Confidence 3345589999999999999999999999999999999999999875421 011111
Q ss_pred cccch--h--------hHHHHHHHHHHcCCC-CCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhh
Q 024413 116 ANIDI--R--------DTIRYKEVMKQFNLG-PNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSA 184 (268)
Q Consensus 116 ~~~~~--~--------~~~~~~~~l~~~~l~-~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~ 184 (268)
+++.. . ...++.++++.++|. ...... +..|||||+||++||+|++.+|+++|+|||+..-+.....
T Consensus 105 e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~--~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~ 182 (287)
T PRK13641 105 KDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKS--PFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRK 182 (287)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCC--cccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHH
Confidence 11110 0 122467788899986 333444 8899999999999999999999999999998754322222
Q ss_pred HHHHHHHHHhccCCcEEEEEEc
Q 024413 185 SGAIITEAFASTFPTVVTYVVD 206 (268)
Q Consensus 185 ~~~~i~~~~~~~~~d~vv~vvD 206 (268)
....+...++.....+++..+|
T Consensus 183 ~l~~~l~~l~~~g~tvlivsH~ 204 (287)
T PRK13641 183 EMMQLFKDYQKAGHTVILVTHN 204 (287)
T ss_pred HHHHHHHHHHhCCCEEEEEeCC
Confidence 3333333343332344444444
No 90
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.86 E-value=5e-21 Score=165.53 Aligned_cols=144 Identities=15% Similarity=0.072 Sum_probs=99.1
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC--------CCcccccccch-------h---h
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV--------MTLPFAANIDI-------R---D 122 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~--------~~~~~~~~~~~-------~---~ 122 (268)
.....+++|++++|+|+||||||||+++|+|..+|++|.+++++.+... ...+..+++.. . .
T Consensus 40 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~ 119 (224)
T cd03220 40 DVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPELTGRENIYLNGRLLGLSRKEI 119 (224)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCCCcHHHHHHHHHHHcCCCHHHH
Confidence 3445589999999999999999999999999999999999998865321 11122222211 0 0
Q ss_pred HHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc-hhhhhhHHHHHHHHHhccCCcEE
Q 024413 123 TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE-IFTWSASGAIITEAFASTFPTVV 201 (268)
Q Consensus 123 ~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~-~~~~~~~~~~i~~~~~~~~~d~v 201 (268)
...+.++++.+++.+..... +..|||||+||+++|++++.+|+++|+|||...- +.+.......+. .+......++
T Consensus 120 ~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~-~~~~~~~tii 196 (224)
T cd03220 120 DEKIDEIIEFSELGDFIDLP--VKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLR-ELLKQGKTVI 196 (224)
T ss_pred HHHHHHHHHHcCChhhhhCC--hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH-HHHhCCCEEE
Confidence 12355677888887554443 8999999999999999999999999999998754 333232333333 3333333444
Q ss_pred EEEEcC
Q 024413 202 TYVVDT 207 (268)
Q Consensus 202 v~vvD~ 207 (268)
+..+|.
T Consensus 197 i~sH~~ 202 (224)
T cd03220 197 LVSHDP 202 (224)
T ss_pred EEeCCH
Confidence 444443
No 91
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.86 E-value=6.3e-21 Score=161.38 Aligned_cols=143 Identities=12% Similarity=0.028 Sum_probs=98.1
Q ss_pred cccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC------CCccc----ccccchh-----------
Q 024413 63 INFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV------MTLPF----AANIDIR----------- 121 (268)
Q Consensus 63 ~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~------~~~~~----~~~~~~~----------- 121 (268)
...+++|++++|+|+||||||||+++|+|..+|++|.++++|.+... ..++. .....+.
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~ 99 (195)
T PRK13541 20 SITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKFWSEIYN 99 (195)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHHHHHHHhcc
Confidence 34588999999999999999999999999999999999999865321 01111 0111111
Q ss_pred hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCc-chhhhhhHHHHHHHHHhccCCcE
Q 024413 122 DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQI-EIFTWSASGAIITEAFASTFPTV 200 (268)
Q Consensus 122 ~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~-~~~~~~~~~~~i~~~~~~~~~d~ 200 (268)
....+.++++.+++....... +..||+||+||+++|+|++.+|+++|+|||... ++.........+ .........+
T Consensus 100 ~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l-~~~~~~~~ti 176 (195)
T PRK13541 100 SAETLYAAIHYFKLHDLLDEK--CYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLI-VMKANSGGIV 176 (195)
T ss_pred cHHHHHHHHHHcCCHhhhccC--hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-HHHHhCCCEE
Confidence 123456677888887544433 889999999999999999999999999999874 443322233333 2222233455
Q ss_pred EEEEEcCC
Q 024413 201 VTYVVDTP 208 (268)
Q Consensus 201 vv~vvD~~ 208 (268)
++..+|..
T Consensus 177 ii~sh~~~ 184 (195)
T PRK13541 177 LLSSHLES 184 (195)
T ss_pred EEEeCCcc
Confidence 55555553
No 92
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.86 E-value=2.7e-21 Score=174.36 Aligned_cols=115 Identities=15% Similarity=0.150 Sum_probs=90.4
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC-------------------Ccccccccch--
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM-------------------TLPFAANIDI-- 120 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~-------------------~~~~~~~~~~-- 120 (268)
....+++|++++|+||||||||||+++|+|+..|++|.|.++|.++... .++..+++..
T Consensus 21 is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~ 100 (301)
T TIGR03522 21 VSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIA 100 (301)
T ss_pred eEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHH
Confidence 3445899999999999999999999999999999999999988754210 1111112111
Q ss_pred -----h-h--HHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc
Q 024413 121 -----R-D--TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE 178 (268)
Q Consensus 121 -----~-~--~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~ 178 (268)
. . ..++.++++.++|.+..+.. ++.||+||+||+++|+|++.+|+++|+|||+..-
T Consensus 101 ~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gL 164 (301)
T TIGR03522 101 GIYGMKGQLLKQRVEEMIELVGLRPEQHKK--IGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGL 164 (301)
T ss_pred HHcCCCHHHHHHHHHHHHHHCCCchHhcCc--hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 0 0 23567788999998765555 8999999999999999999999999999998754
No 93
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.86 E-value=4e-21 Score=167.67 Aligned_cols=144 Identities=17% Similarity=0.174 Sum_probs=99.4
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC-----------C----------cccccccc
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM-----------T----------LPFAANID 119 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~-----------~----------~~~~~~~~ 119 (268)
.....+.+|++++|+|+||||||||+++|+|..+|++|.+++++.+.... . .+..+++.
T Consensus 20 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~ 99 (242)
T TIGR03411 20 DLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLE 99 (242)
T ss_pred eeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHHHHHH
Confidence 34445899999999999999999999999999999999999988653210 0 11111111
Q ss_pred hh------------------hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhh
Q 024413 120 IR------------------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFT 181 (268)
Q Consensus 120 ~~------------------~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~ 181 (268)
.. ....+.++++.+++....... +..|||||+||++||+|++.+|+++|+|||+..-+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~ 177 (242)
T TIGR03411 100 LALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRL--AGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDE 177 (242)
T ss_pred HhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCC--hhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHH
Confidence 10 123466788889987544443 8999999999999999999999999999998754322
Q ss_pred hhhHHHHHHHHHhccCCcEEEEEEcC
Q 024413 182 WSASGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 182 ~~~~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
.......+.+.+.. ...+|+..+|.
T Consensus 178 ~~~~l~~~l~~~~~-~~tii~~sH~~ 202 (242)
T TIGR03411 178 ETEKTAELLKSLAG-KHSVVVVEHDM 202 (242)
T ss_pred HHHHHHHHHHHHhc-CCEEEEEECCH
Confidence 22223333333333 23445544544
No 94
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.86 E-value=4.1e-21 Score=168.39 Aligned_cols=140 Identities=14% Similarity=0.051 Sum_probs=94.9
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC--C------Ccccccccch--h----hHHHHHHHHH
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV--M------TLPFAANIDI--R----DTIRYKEVMK 131 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~--~------~~~~~~~~~~--~----~~~~~~~~l~ 131 (268)
+.+|++++|+|+||||||||+++|+|+.+|++|.+.+.+..... + ..+..+++.. . ......++++
T Consensus 22 i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~ 101 (246)
T cd03237 22 ISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAK 101 (246)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHH
Confidence 67899999999999999999999999999999999988743211 1 1111111111 0 1123566888
Q ss_pred HcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhc-cCCcEEEEEEcC
Q 024413 132 QFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS-TFPTVVTYVVDT 207 (268)
Q Consensus 132 ~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~-~~~d~vv~vvD~ 207 (268)
.+++....... +..|||||+||++||++++.+|+++|+|||....+.........++..+.. ....+|+..+|.
T Consensus 102 ~l~l~~~~~~~--~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~ 176 (246)
T cd03237 102 PLQIEQILDRE--VPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDI 176 (246)
T ss_pred HcCCHHHhhCC--hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 88887544333 889999999999999999999999999999875432222222333333322 233444444443
No 95
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.86 E-value=3.9e-21 Score=163.26 Aligned_cols=145 Identities=11% Similarity=0.015 Sum_probs=98.8
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC---------Ccccc----cccchh------
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM---------TLPFA----ANIDIR------ 121 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~---------~~~~~----~~~~~~------ 121 (268)
.....+.+|++++|+|+||||||||+++|+|..+|++|.++++|.+.... .++.. ...++.
T Consensus 19 ~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~ 98 (200)
T PRK13540 19 QISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYD 98 (200)
T ss_pred eeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCHHHHHHHH
Confidence 33445899999999999999999999999999999999999988754210 00000 111111
Q ss_pred -----hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhcc
Q 024413 122 -----DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAST 196 (268)
Q Consensus 122 -----~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~ 196 (268)
....+.++++.+++..... ..+..||+||+||+++|++++.+|+++|+|||...-+.........+.+.++..
T Consensus 99 ~~~~~~~~~~~~~l~~~~l~~~~~--~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~ 176 (200)
T PRK13540 99 IHFSPGAVGITELCRLFSLEHLID--YPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAK 176 (200)
T ss_pred HhcCcchHHHHHHHHHcCCchhhh--CChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHc
Confidence 1234677888888864333 337899999999999999999999999999998754322222222333333333
Q ss_pred CCcEEEEEEcC
Q 024413 197 FPTVVTYVVDT 207 (268)
Q Consensus 197 ~~d~vv~vvD~ 207 (268)
...+++..+|.
T Consensus 177 ~~tiii~sh~~ 187 (200)
T PRK13540 177 GGAVLLTSHQD 187 (200)
T ss_pred CCEEEEEeCCc
Confidence 33444444453
No 96
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=4.1e-21 Score=172.01 Aligned_cols=119 Identities=14% Similarity=0.018 Sum_probs=89.1
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC------------Cccccc-----ccchh--
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM------------TLPFAA-----NIDIR-- 121 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~------------~~~~~~-----~~~~~-- 121 (268)
.....+.+|++++|+|+||||||||+++|+|+.+|++|.|+++|.+.... .++... ..++.
T Consensus 25 ~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~ 104 (287)
T PRK13637 25 NVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKD 104 (287)
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccHHHH
Confidence 34455899999999999999999999999999999999999988654210 011111 00110
Q ss_pred --------------hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 122 --------------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 122 --------------~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
...++.++++.++|.........+..|||||+||++||+|++.+|+++|+|||+...+
T Consensus 105 l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD 176 (287)
T PRK13637 105 IAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLD 176 (287)
T ss_pred HHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCC
Confidence 1134677899999962111223389999999999999999999999999999987543
No 97
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=3.3e-21 Score=171.18 Aligned_cols=144 Identities=14% Similarity=0.018 Sum_probs=98.6
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC------------Ccccc-----------cc
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM------------TLPFA-----------AN 117 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~------------~~~~~-----------~~ 117 (268)
.....+.+|++++|+|+||||||||+++|+|+.+|++|.++++|.+.... .++.. ++
T Consensus 19 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~ 98 (271)
T PRK13638 19 GLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSD 98 (271)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhccccccHHHH
Confidence 34455899999999999999999999999999999999999988764210 01111 01
Q ss_pred cch-------h---hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch-hhhhhHH
Q 024413 118 IDI-------R---DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI-FTWSASG 186 (268)
Q Consensus 118 ~~~-------~---~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~-~~~~~~~ 186 (268)
+.. . ....+.++++.+++....... +..|||||+||++||++++.+|+++|+|||+..-+ .......
T Consensus 99 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~ 176 (271)
T PRK13638 99 IAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQP--IQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMI 176 (271)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCC--chhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence 110 0 012345678888887544433 88999999999999999999999999999987543 3323233
Q ss_pred HHHHHHHhccCCcEEEEEEcC
Q 024413 187 AIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 187 ~~i~~~~~~~~~d~vv~vvD~ 207 (268)
. +...+......+|+..+|.
T Consensus 177 ~-~l~~~~~~g~tii~vtH~~ 196 (271)
T PRK13638 177 A-IIRRIVAQGNHVIISSHDI 196 (271)
T ss_pred H-HHHHHHHCCCEEEEEeCCH
Confidence 3 3333333333444544554
No 98
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=4e-21 Score=167.79 Aligned_cols=144 Identities=16% Similarity=0.054 Sum_probs=98.4
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC----------CC----------cccccccchh
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV----------MT----------LPFAANIDIR 121 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~----------~~----------~~~~~~~~~~ 121 (268)
....+.+|++++|+||||||||||+++|+|..+|++|.+.++|.+... .. .+..+++...
T Consensus 20 is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~ 99 (242)
T cd03295 20 LNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALV 99 (242)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHH
Confidence 344589999999999999999999999999999999999998865321 00 1111111110
Q ss_pred ----------hHHHHHHHHHHcCCCC--CCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHH
Q 024413 122 ----------DTIRYKEVMKQFNLGP--NGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAII 189 (268)
Q Consensus 122 ----------~~~~~~~~l~~~~l~~--~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i 189 (268)
....+.++++.+++.. ... ..+..|||||+||++||+|++.+|+++|+|||...-+.........+
T Consensus 100 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~--~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~ 177 (242)
T cd03295 100 PKLLKWPKEKIRERADELLALVGLDPAEFAD--RYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEE 177 (242)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCCcHHHHh--cChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHH
Confidence 1234667889999975 333 33899999999999999999999999999999875432222222233
Q ss_pred HHHHhcc-CCcEEEEEEcC
Q 024413 190 TEAFAST-FPTVVTYVVDT 207 (268)
Q Consensus 190 ~~~~~~~-~~d~vv~vvD~ 207 (268)
...++.. ...+|+..+|.
T Consensus 178 L~~~~~~~g~tvii~sH~~ 196 (242)
T cd03295 178 FKRLQQELGKTIVFVTHDI 196 (242)
T ss_pred HHHHHHHcCCEEEEEecCH
Confidence 3333322 34455554554
No 99
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.86 E-value=6.1e-21 Score=164.80 Aligned_cols=139 Identities=14% Similarity=0.122 Sum_probs=97.4
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCC-----CCCc------------ccccccc---------
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-----VMTL------------PFAANID--------- 119 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~-----~~~~------------~~~~~~~--------- 119 (268)
+++|++++|+|+||||||||+++|+|..++++|.+.++|.+.. ...+ +..+++.
T Consensus 3 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~ 82 (223)
T TIGR03771 3 ADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIGW 82 (223)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhcccccccc
Confidence 6789999999999999999999999999999999999886531 0000 1111110
Q ss_pred -----hhhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc-hhhhhhHHHHHHHHH
Q 024413 120 -----IRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE-IFTWSASGAIITEAF 193 (268)
Q Consensus 120 -----~~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~-~~~~~~~~~~i~~~~ 193 (268)
......+.++++.+++....... +..||+||+||++||++++.+|+++|+|||...- +.+....... ...+
T Consensus 83 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~-l~~~ 159 (223)
T TIGR03771 83 LRRPCVADFAAVRDALRRVGLTELADRP--VGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTEL-FIEL 159 (223)
T ss_pred ccCCcHHHHHHHHHHHHHhCCchhhcCC--hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHHH
Confidence 01123467788999997654444 8899999999999999999999999999998754 3333333333 3333
Q ss_pred hccCCcEEEEEEcC
Q 024413 194 ASTFPTVVTYVVDT 207 (268)
Q Consensus 194 ~~~~~d~vv~vvD~ 207 (268)
......+++..+|.
T Consensus 160 ~~~~~tvii~sH~~ 173 (223)
T TIGR03771 160 AGAGTAILMTTHDL 173 (223)
T ss_pred HHcCCEEEEEeCCH
Confidence 33333455554554
No 100
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.86 E-value=3.4e-21 Score=165.84 Aligned_cols=143 Identities=13% Similarity=0.096 Sum_probs=95.7
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC-----------CCcccc----cccchh-----
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV-----------MTLPFA----ANIDIR----- 121 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~-----------~~~~~~----~~~~~~----- 121 (268)
....+.+|++++|+||||||||||+++|+|+.+|++|.+++++.+... ..++.. ..+++.
T Consensus 19 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~ 98 (222)
T cd03224 19 VSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLL 98 (222)
T ss_pred eeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHH
Confidence 344588999999999999999999999999999999999998865321 001111 011110
Q ss_pred ---------hHHHHHHHHHHc-CCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch-hhhhhHHHHHH
Q 024413 122 ---------DTIRYKEVMKQF-NLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI-FTWSASGAIIT 190 (268)
Q Consensus 122 ---------~~~~~~~~l~~~-~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~-~~~~~~~~~i~ 190 (268)
....+.++++.+ ++..... ..+..|||||+||++||+|++.+|+++|+|||...-+ ........ +.
T Consensus 99 ~~~~~~~~~~~~~~~~~l~~~~~l~~~~~--~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l 175 (222)
T cd03224 99 GAYARRRAKRKARLERVYELFPRLKERRK--QLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFE-AI 175 (222)
T ss_pred HhhhcCchhHHHHHHHHHHHHHhhhhhhh--CchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHH-HH
Confidence 112344566666 4544333 3388999999999999999999999999999987543 22232333 33
Q ss_pred HHHhccCCcEEEEEEcC
Q 024413 191 EAFASTFPTVVTYVVDT 207 (268)
Q Consensus 191 ~~~~~~~~d~vv~vvD~ 207 (268)
..+......+++..+|.
T Consensus 176 ~~~~~~~~tiii~sH~~ 192 (222)
T cd03224 176 RELRDEGVTILLVEQNA 192 (222)
T ss_pred HHHHHCCCEEEEEeCCH
Confidence 33333334555555554
No 101
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=3.5e-21 Score=167.12 Aligned_cols=143 Identities=12% Similarity=0.083 Sum_probs=99.2
Q ss_pred cccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC------------C------Ccccccccch----
Q 024413 63 INFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV------------M------TLPFAANIDI---- 120 (268)
Q Consensus 63 ~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~------------~------~~~~~~~~~~---- 120 (268)
...+.+|++++|+|+||||||||+++|+|.++|++|.+.++|.+... + ..+..+++..
T Consensus 19 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~ 98 (232)
T PRK10771 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNP 98 (232)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhccccc
Confidence 44588999999999999999999999999999999999998865321 0 0111111110
Q ss_pred ------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch-hhhhhHHHHHHHHH
Q 024413 121 ------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI-FTWSASGAIITEAF 193 (268)
Q Consensus 121 ------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~-~~~~~~~~~i~~~~ 193 (268)
....++.++++.+++....... +..|||||+||+++|++++.+|+++|+|||...-+ .+.......+.+..
T Consensus 99 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~ 176 (232)
T PRK10771 99 GLKLNAAQREKLHAIARQMGIEDLLARL--PGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVC 176 (232)
T ss_pred ccCCCHHHHHHHHHHHHHcCcHHHHhCC--cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 1123467788999987544444 88999999999999999999999999999987543 22222233333322
Q ss_pred hccCCcEEEEEEcC
Q 024413 194 ASTFPTVVTYVVDT 207 (268)
Q Consensus 194 ~~~~~d~vv~vvD~ 207 (268)
+.....+|+..+|.
T Consensus 177 ~~~~~tiii~sH~~ 190 (232)
T PRK10771 177 QERQLTLLMVSHSL 190 (232)
T ss_pred HhcCCEEEEEECCH
Confidence 22234555555555
No 102
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.86 E-value=4e-21 Score=176.77 Aligned_cols=114 Identities=11% Similarity=0.078 Sum_probs=88.6
Q ss_pred cccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC------------------CC------ccccccc
Q 024413 63 INFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV------------------MT------LPFAANI 118 (268)
Q Consensus 63 ~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~------------------~~------~~~~~~~ 118 (268)
...+++|++++|+||||||||||+++|+|+.+|++|.++++|.+... +. .+..+++
T Consensus 18 sl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl 97 (352)
T PRK11144 18 NLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNL 97 (352)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHH
Confidence 34478999999999999999999999999999999999998865321 00 0111111
Q ss_pred ch----hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc
Q 024413 119 DI----RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE 178 (268)
Q Consensus 119 ~~----~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~ 178 (268)
.. ....++.++++.++|....... +..|||||+||++||+|++.+|+++|+|||...-
T Consensus 98 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LSgGq~qRvalaraL~~~p~llLLDEPts~L 159 (352)
T PRK11144 98 RYGMAKSMVAQFDKIVALLGIEPLLDRY--PGSLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred HhhhhhhhHHHHHHHHHHcCCchhhhCC--cccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC
Confidence 11 1123577889999997654444 8999999999999999999999999999998753
No 103
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=3.5e-21 Score=171.78 Aligned_cols=145 Identities=9% Similarity=-0.007 Sum_probs=100.3
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC----------CCc-----------ccccccc
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV----------MTL-----------PFAANID 119 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~----------~~~-----------~~~~~~~ 119 (268)
.....+++|++++|+|+||||||||+++|+|+.+|++|.++++|.+... ..+ +..+++.
T Consensus 25 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~ 104 (279)
T PRK13650 25 DVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVA 104 (279)
T ss_pred eeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHH
Confidence 3445589999999999999999999999999999999999999876421 000 1111111
Q ss_pred hh----------hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHH
Q 024413 120 IR----------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAII 189 (268)
Q Consensus 120 ~~----------~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i 189 (268)
.. ...++.++++.++|....... +..|||||+||++||+|++.+|+++|+|||+...+.........+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~--~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~ 182 (279)
T PRK13650 105 FGLENKGIPHEEMKERVNEALELVGMQDFKERE--PARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKT 182 (279)
T ss_pred hhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCC--cccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHH
Confidence 10 123467789999997544444 899999999999999999999999999999875432222222233
Q ss_pred HHHHhcc-CCcEEEEEEcC
Q 024413 190 TEAFAST-FPTVVTYVVDT 207 (268)
Q Consensus 190 ~~~~~~~-~~d~vv~vvD~ 207 (268)
...++.. ...+++..+|.
T Consensus 183 l~~l~~~~g~tilivtH~~ 201 (279)
T PRK13650 183 IKGIRDDYQMTVISITHDL 201 (279)
T ss_pred HHHHHHhcCCEEEEEecCH
Confidence 3333322 33444444554
No 104
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.86 E-value=4.4e-21 Score=176.59 Aligned_cols=115 Identities=16% Similarity=0.116 Sum_probs=89.1
Q ss_pred cccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC--------------C----------ccccccc
Q 024413 63 INFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM--------------T----------LPFAANI 118 (268)
Q Consensus 63 ~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~--------------~----------~~~~~~~ 118 (268)
...+++|++++|+||||||||||+++|+|+.+|++|.++++|.+.... . ++..+++
T Consensus 17 sl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl 96 (354)
T TIGR02142 17 DFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNL 96 (354)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHH
Confidence 345789999999999999999999999999999999999988654210 0 1111111
Q ss_pred ch--h------hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 119 DI--R------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 119 ~~--~------~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
.. . ...++.++++.++|....... +..|||||+||++||+|++.+|+++|+|||...-+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~--~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD 163 (354)
T TIGR02142 97 RYGMKRARPSERRISFERVIELLGIGHLLGRL--PGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALD 163 (354)
T ss_pred HHHhhccChhHHHHHHHHHHHHcCChhHhcCC--hhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCC
Confidence 11 0 122467889999997655544 89999999999999999999999999999987543
No 105
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=4.1e-21 Score=168.82 Aligned_cols=145 Identities=12% Similarity=0.035 Sum_probs=98.2
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC---------------CC------cccccccc
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV---------------MT------LPFAANID 119 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~---------------~~------~~~~~~~~ 119 (268)
.....+.+|++++|+|+||||||||+++|+|+.+|++|.+.++|.+... .. .+..+++.
T Consensus 23 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~ 102 (255)
T PRK11300 23 NVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLL 102 (255)
T ss_pred eeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHHHHHH
Confidence 3344588999999999999999999999999999999999998865321 00 01111111
Q ss_pred hh-------------------------hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCC
Q 024413 120 IR-------------------------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP 174 (268)
Q Consensus 120 ~~-------------------------~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDeP 174 (268)
.. ....+.++++.+++....... +..|||||+||++||+|++.+|+++|+|||
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LS~G~~qrv~la~al~~~p~llllDEP 180 (255)
T PRK11300 103 VAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQ--AGNLAYGQQRRLEIARCMVTQPEILMLDEP 180 (255)
T ss_pred HhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCC--hhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 00 012355677888886544433 899999999999999999999999999999
Q ss_pred CCcchhhhhhHHHHHHHHHhcc-CCcEEEEEEcC
Q 024413 175 GQIEIFTWSASGAIITEAFAST-FPTVVTYVVDT 207 (268)
Q Consensus 175 G~~~~~~~~~~~~~i~~~~~~~-~~d~vv~vvD~ 207 (268)
...-+.........+...++.. ...+++..+|.
T Consensus 181 t~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~ 214 (255)
T PRK11300 181 AAGLNPKETKELDELIAELRNEHNVTVLLIEHDM 214 (255)
T ss_pred ccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH
Confidence 8754322222333333333333 34445544544
No 106
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=6.1e-21 Score=166.56 Aligned_cols=144 Identities=14% Similarity=0.076 Sum_probs=98.5
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCC----------------CCCc----------ccc
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA----------------VMTL----------PFA 115 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~----------------~~~~----------~~~ 115 (268)
....+.+|++++|+|+||||||||+++|+|..+|++|.+.++|.+.. ...+ +..
T Consensus 21 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 100 (242)
T PRK11124 21 ITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQ 100 (242)
T ss_pred eeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCccccCCCcHH
Confidence 34458899999999999999999999999999999999999887531 0001 111
Q ss_pred cccch--------h---hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhh
Q 024413 116 ANIDI--------R---DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSA 184 (268)
Q Consensus 116 ~~~~~--------~---~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~ 184 (268)
+++.. . ....+.++++.+++....... +..|||||+||++||+|++.+|+++|+|||...-+.....
T Consensus 101 e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~ 178 (242)
T PRK11124 101 QNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRF--PLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITA 178 (242)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCC--hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHH
Confidence 11110 0 022356678888987544444 8999999999999999999999999999998754322222
Q ss_pred HHHHHHHHHhccCCcEEEEEEcC
Q 024413 185 SGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 185 ~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
....+.+.++.....+++..+|.
T Consensus 179 ~l~~~l~~~~~~~~tii~~sh~~ 201 (242)
T PRK11124 179 QIVSIIRELAETGITQVIVTHEV 201 (242)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCH
Confidence 22233333333334455544554
No 107
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.86 E-value=6.4e-21 Score=167.13 Aligned_cols=145 Identities=15% Similarity=0.080 Sum_probs=98.5
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC------------------CC----------c
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV------------------MT----------L 112 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~------------------~~----------~ 112 (268)
.....+++|++++|+|+||||||||+++|+|..+|++|.+++++.+... .. .
T Consensus 21 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 100 (250)
T PRK11264 21 GIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHR 100 (250)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcccCCCC
Confidence 3445589999999999999999999999999999999999988754310 00 0
Q ss_pred ccccccch-----h------hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhh
Q 024413 113 PFAANIDI-----R------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFT 181 (268)
Q Consensus 113 ~~~~~~~~-----~------~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~ 181 (268)
+..+++.. . ....+.++++.+++....... +..|||||+||++||+|++.+|+++|+|||+..-+..
T Consensus 101 tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~ 178 (250)
T PRK11264 101 TVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSY--PRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPE 178 (250)
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCC--hhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHH
Confidence 11111110 0 112356678888887544333 8999999999999999999999999999998754322
Q ss_pred hhhHHHHHHHHHhccCCcEEEEEEcC
Q 024413 182 WSASGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 182 ~~~~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
.......+...+......+++..+|.
T Consensus 179 ~~~~l~~~l~~~~~~~~tvi~~tH~~ 204 (250)
T PRK11264 179 LVGEVLNTIRQLAQEKRTMVIVTHEM 204 (250)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 22222233333333334455544554
No 108
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.86 E-value=6.8e-21 Score=176.30 Aligned_cols=117 Identities=17% Similarity=0.152 Sum_probs=90.3
Q ss_pred CcccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecc----cCCC--------------C----------C
Q 024413 60 SSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNL----DPAV--------------M----------T 111 (268)
Q Consensus 60 ~~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~----~~~~--------------~----------~ 111 (268)
....+.+++|++++|+|+||||||||+++|+|+++|++|.|+++|. +... . .
T Consensus 41 ~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~ 120 (382)
T TIGR03415 41 ANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPW 120 (382)
T ss_pred EeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCC
Confidence 3445568999999999999999999999999999999999999884 2110 0 0
Q ss_pred cccccccch----------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc
Q 024413 112 LPFAANIDI----------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE 178 (268)
Q Consensus 112 ~~~~~~~~~----------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~ 178 (268)
.+..+|+.. ....++.++++.++|....... +.+|||||+||++||||++.+|+++|+|||....
T Consensus 121 ~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~--~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~L 195 (382)
T TIGR03415 121 LTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKK--PGELSGGMQQRVGLARAFAMDADILLMDEPFSAL 195 (382)
T ss_pred CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCC--hhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccC
Confidence 111112211 0123567789999997655544 8999999999999999999999999999998753
No 109
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.86 E-value=4.1e-21 Score=164.63 Aligned_cols=115 Identities=14% Similarity=0.097 Sum_probs=88.6
Q ss_pred cccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC--------C----------Ccccccccch----
Q 024413 63 INFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV--------M----------TLPFAANIDI---- 120 (268)
Q Consensus 63 ~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~--------~----------~~~~~~~~~~---- 120 (268)
...+.+|++++|+|+||||||||+++|+|..+|++|.+++++.+... . ..+..+++..
T Consensus 18 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~ 97 (213)
T TIGR01277 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHP 97 (213)
T ss_pred EEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhHhhc
Confidence 34588999999999999999999999999999999999998875321 0 0111112111
Q ss_pred ------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 121 ------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 121 ------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
....++.++++.+++....... +..||+||+||++||++++.+|+++|+|||+..-+
T Consensus 98 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD 160 (213)
T TIGR01277 98 GLKLNAEQQEKVVDAAQQVGIADYLDRL--PEQLSGGQRQRVALARCLVRPNPILLLDEPFSALD 160 (213)
T ss_pred cCCccHHHHHHHHHHHHHcCcHHHhhCC--cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCC
Confidence 0123466788999997544443 88999999999999999999999999999987543
No 110
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.86 E-value=4.9e-21 Score=169.92 Aligned_cols=144 Identities=14% Similarity=0.033 Sum_probs=99.2
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC-------------CCc----------cccccc
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV-------------MTL----------PFAANI 118 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~-------------~~~----------~~~~~~ 118 (268)
....+++|++++|+|+||||||||+++|+|+.+|++|.++++|.+... ..+ +..+++
T Consensus 26 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl 105 (269)
T PRK11831 26 ISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNV 105 (269)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHH
Confidence 344589999999999999999999999999999999999998864320 000 111111
Q ss_pred ch--h-----h----HHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHH
Q 024413 119 DI--R-----D----TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGA 187 (268)
Q Consensus 119 ~~--~-----~----~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~ 187 (268)
.. . + ...+.++++.+++....... +..|||||+||++||++++.+|+++|+|||+..-+........
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~ 183 (269)
T PRK11831 106 AYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLM--PSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLV 183 (269)
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCC--hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHH
Confidence 11 0 0 12345678889987544444 8999999999999999999999999999998754322222333
Q ss_pred HHHHHHhcc-CCcEEEEEEcC
Q 024413 188 IITEAFAST-FPTVVTYVVDT 207 (268)
Q Consensus 188 ~i~~~~~~~-~~d~vv~vvD~ 207 (268)
.+...+... ...+|+..+|.
T Consensus 184 ~~l~~~~~~~g~tiiivsH~~ 204 (269)
T PRK11831 184 KLISELNSALGVTCVVVSHDV 204 (269)
T ss_pred HHHHHHHHhcCcEEEEEecCH
Confidence 333343332 34555555554
No 111
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=5e-21 Score=167.01 Aligned_cols=145 Identities=16% Similarity=0.054 Sum_probs=99.6
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC-----------CC----------cccccccc
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV-----------MT----------LPFAANID 119 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~-----------~~----------~~~~~~~~ 119 (268)
.....+++|++++|+|+||||||||+++|+|+.+|++|.+++++.+... .. .+..+++.
T Consensus 21 ~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~ 100 (241)
T PRK10895 21 DVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLM 100 (241)
T ss_pred eeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHh
Confidence 3345589999999999999999999999999999999999998865311 00 11111111
Q ss_pred h----h-------hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHH
Q 024413 120 I----R-------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAI 188 (268)
Q Consensus 120 ~----~-------~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~ 188 (268)
. . ....+.++++.+++....... ++.|||||+||+++|++++.+|+++|+|||+..-+.........
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~ 178 (241)
T PRK10895 101 AVLQIRDDLSAEQREDRANELMEEFHIEHLRDSM--GQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKR 178 (241)
T ss_pred hhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcc--hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 1 0 123467788888887543333 88999999999999999999999999999987543222222223
Q ss_pred HHHHHhccCCcEEEEEEcC
Q 024413 189 ITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 189 i~~~~~~~~~d~vv~vvD~ 207 (268)
+...++.....+++..+|.
T Consensus 179 ~l~~~~~~g~tiii~sH~~ 197 (241)
T PRK10895 179 IIEHLRDSGLGVLITDHNV 197 (241)
T ss_pred HHHHHHhcCCEEEEEEcCH
Confidence 3334433334555555554
No 112
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=99.86 E-value=1.3e-21 Score=165.76 Aligned_cols=175 Identities=29% Similarity=0.484 Sum_probs=156.4
Q ss_pred EEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccchhhhcHH
Q 024413 72 IIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTTK 151 (268)
Q Consensus 72 v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G 151 (268)
.+|||||||||||.++-+..++...+..+.+.+.||..+++++...+++++...+.++++.++|+||+...+.+..|--+
T Consensus 5 qvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaNd~~~Y~~~v~I~elit~edvm~~~~LGPNg~l~yc~E~l~~~ 84 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPANDNLPYECAVDIRELITVEDVMEELGLGPNGALKYCMEYLEAN 84 (290)
T ss_pred eEEEcCCCCCccchhhhHHHHHHHhCCceEEEecCCcccCCCCCCcccHHHHccHHHHHHHhCCCCchhHHHHHHHHHhh
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999989999888
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhc-cCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhh
Q 024413 152 FDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKT 230 (268)
Q Consensus 152 ~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~-~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~ 230 (268)
-.+.+.-.+. ..-.++|+|.|||.|.+.++.....+.+++++ ...-++|.++|+.-..++..+....+..+.-+.+.
T Consensus 85 idwl~~~l~~--~~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~m 162 (290)
T KOG1533|consen 85 IDWLLEKLKP--LTDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHM 162 (290)
T ss_pred hHHHHHHhhh--ccCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHhh
Confidence 8666655554 35679999999999999988888888888765 55789999999999999999998888888888899
Q ss_pred CCCceeeecCCCcCChhh
Q 024413 231 RLPLVLAFNKTDVAQHEF 248 (268)
Q Consensus 231 ~~p~ilV~NK~Dl~~~~~ 248 (268)
+.|.|.|+.|+|+.+.-+
T Consensus 163 elphVNvlSK~Dl~~~yg 180 (290)
T KOG1533|consen 163 ELPHVNVLSKADLLKKYG 180 (290)
T ss_pred cccchhhhhHhHHHHhhc
Confidence 999999999999987543
No 113
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=6e-21 Score=172.32 Aligned_cols=145 Identities=17% Similarity=0.032 Sum_probs=98.8
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCC--------------------------------
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-------------------------------- 108 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~-------------------------------- 108 (268)
.....+.+|++++|+|+||||||||+++|+|+.+|++|.+++++.+..
T Consensus 25 ~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (305)
T PRK13651 25 NVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIR 104 (305)
T ss_pred eeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccchHHHHH
Confidence 344558999999999999999999999999999999999999764320
Q ss_pred --CCCcccc-----------cccch----------hhHHHHHHHHHHcCCC-CCCCcccchhhhcHHHHHHHHHHHHHhc
Q 024413 109 --VMTLPFA-----------ANIDI----------RDTIRYKEVMKQFNLG-PNGGILTSLNLFTTKFDEVISLIERRAD 164 (268)
Q Consensus 109 --~~~~~~~-----------~~~~~----------~~~~~~~~~l~~~~l~-~~~~~~~~~~~lS~G~~qr~~ia~al~~ 164 (268)
...++.. +++.. ....++.++++.++|. ..... .+..|||||+||++||++++.
T Consensus 105 ~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~--~~~~LSgGqkqrvalA~aL~~ 182 (305)
T PRK13651 105 RRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQR--SPFELSGGQKRRVALAGILAM 182 (305)
T ss_pred hceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhC--ChhhCCHHHHHHHHHHHHHHh
Confidence 0001111 11110 0123567889999996 33333 389999999999999999999
Q ss_pred CCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcC
Q 024413 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
+|+++|+|||+...+.........+...++.....+++..+|.
T Consensus 183 ~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~ 225 (305)
T PRK13651 183 EPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDL 225 (305)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCH
Confidence 9999999999875432222222233333333333445544554
No 114
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=4.8e-21 Score=164.25 Aligned_cols=143 Identities=13% Similarity=0.013 Sum_probs=98.2
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC--------------CC----------cccccc
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV--------------MT----------LPFAAN 117 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~--------------~~----------~~~~~~ 117 (268)
....+.+ ++++|+|+||||||||+++|+|+.+|++|.++++|.+... .. .+..++
T Consensus 17 vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~ 95 (214)
T cd03297 17 IDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVREN 95 (214)
T ss_pred ceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHH
Confidence 3445788 9999999999999999999999999999999998865310 00 011111
Q ss_pred cch--------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHH
Q 024413 118 IDI--------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAII 189 (268)
Q Consensus 118 ~~~--------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i 189 (268)
+.. ....++.++++.+++...... .+..|||||+||++||++++.+|+++|+|||+..-+.........+
T Consensus 96 l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~ 173 (214)
T cd03297 96 LAFGLKRKRNREDRISVDELLDLLGLDHLLNR--YPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPE 173 (214)
T ss_pred HHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhc--CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 111 012346678899998754333 3889999999999999999999999999999875442222333333
Q ss_pred HHHHhcc-CCcEEEEEEcC
Q 024413 190 TEAFAST-FPTVVTYVVDT 207 (268)
Q Consensus 190 ~~~~~~~-~~d~vv~vvD~ 207 (268)
...++.. ...+++..+|.
T Consensus 174 l~~~~~~~~~tiii~sH~~ 192 (214)
T cd03297 174 LKQIKKNLNIPVIFVTHDL 192 (214)
T ss_pred HHHHHHHcCcEEEEEecCH
Confidence 3333333 34455555554
No 115
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.86 E-value=5.5e-21 Score=166.65 Aligned_cols=145 Identities=12% Similarity=0.068 Sum_probs=99.9
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC------------CCc----------cccccc
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV------------MTL----------PFAANI 118 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~------------~~~----------~~~~~~ 118 (268)
.....+.+|++++|+|+||||||||+++|+|..+|++|.++++|.+... ..+ +..+++
T Consensus 19 ~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l 98 (240)
T PRK09493 19 NIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENV 98 (240)
T ss_pred eeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHH
Confidence 3344588999999999999999999999999999999999998865321 000 111111
Q ss_pred chh-----------hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHH
Q 024413 119 DIR-----------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGA 187 (268)
Q Consensus 119 ~~~-----------~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~ 187 (268)
... ....+.++++.+++....... +..||+||+||++||+|++.+|+++|+|||...-+........
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~ 176 (240)
T PRK09493 99 MFGPLRVRGASKEEAEKQARELLAKVGLAERAHHY--PSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVL 176 (240)
T ss_pred HhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcC--hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH
Confidence 110 112456788899987544443 8899999999999999999999999999998754322222222
Q ss_pred HHHHHHhccCCcEEEEEEcC
Q 024413 188 IITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 188 ~i~~~~~~~~~d~vv~vvD~ 207 (268)
.+...+......+++..+|.
T Consensus 177 ~~l~~~~~~~~tiii~sH~~ 196 (240)
T PRK09493 177 KVMQDLAEEGMTMVIVTHEI 196 (240)
T ss_pred HHHHHHHHcCCEEEEEeCCH
Confidence 33333433334555555554
No 116
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.86 E-value=6.8e-21 Score=164.29 Aligned_cols=144 Identities=14% Similarity=0.063 Sum_probs=99.6
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC----------CC------cccccccch-----
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV----------MT------LPFAANIDI----- 120 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~----------~~------~~~~~~~~~----- 120 (268)
....+++|++++|+|+||||||||+++|+|..+|++|.+.+++.+... .. .+..+++..
T Consensus 19 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~ 98 (223)
T TIGR03740 19 ISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARENLKVHTTLL 98 (223)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCCccccCCHHHHHHHHHHHc
Confidence 344588999999999999999999999999999999999998864310 00 111111111
Q ss_pred -hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCc
Q 024413 121 -RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPT 199 (268)
Q Consensus 121 -~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d 199 (268)
.....+.++++.+++....... +..||+||+||+++|+|++.+|+++|+|||...-+.........+...++.....
T Consensus 99 ~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~t 176 (223)
T TIGR03740 99 GLPDSRIDEVLNIVDLTNTGKKK--AKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGIT 176 (223)
T ss_pred CCCHHHHHHHHHHcCCcHHHhhh--HhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCE
Confidence 0133567788999997554443 8999999999999999999999999999998754322222223333333333344
Q ss_pred EEEEEEcC
Q 024413 200 VVTYVVDT 207 (268)
Q Consensus 200 ~vv~vvD~ 207 (268)
+++..+|.
T Consensus 177 iii~sH~~ 184 (223)
T TIGR03740 177 VILSSHIL 184 (223)
T ss_pred EEEEcCCH
Confidence 55555554
No 117
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=4.6e-21 Score=170.59 Aligned_cols=144 Identities=13% Similarity=0.042 Sum_probs=100.2
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC-----------Ccccc-----------ccc
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM-----------TLPFA-----------ANI 118 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~-----------~~~~~-----------~~~ 118 (268)
.....+++|++++|+|+||||||||+++|+|+.+|++|.++++|.+.... .++.. +++
T Consensus 20 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl 99 (274)
T PRK13644 20 NINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDL 99 (274)
T ss_pred eeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccchHHHHH
Confidence 34455899999999999999999999999999999999999998754210 01111 111
Q ss_pred chh----------hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc-hhhhhhHHH
Q 024413 119 DIR----------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE-IFTWSASGA 187 (268)
Q Consensus 119 ~~~----------~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~-~~~~~~~~~ 187 (268)
... ....+.++++.+++....... +..||+||+||++||+|++.+|+++|+|||+..- +.+......
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~ 177 (274)
T PRK13644 100 AFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRS--PKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLE 177 (274)
T ss_pred HhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCC--cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 110 123466778889987554444 8999999999999999999999999999998754 332222223
Q ss_pred HHHHHHhccCCcEEEEEEcC
Q 024413 188 IITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 188 ~i~~~~~~~~~d~vv~vvD~ 207 (268)
+.+.++.....+++..+|.
T Consensus 178 -~l~~l~~~g~til~~tH~~ 196 (274)
T PRK13644 178 -RIKKLHEKGKTIVYITHNL 196 (274)
T ss_pred -HHHHHHhCCCEEEEEecCH
Confidence 3333333334555555554
No 118
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.85 E-value=4.8e-21 Score=165.60 Aligned_cols=145 Identities=14% Similarity=0.016 Sum_probs=97.8
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcc-----cCcccEEEEecccCCC------------CC---------cccc
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHT-----QSRNIRGYVMNLDPAV------------MT---------LPFA 115 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~-----~~~~g~i~i~~~~~~~------------~~---------~~~~ 115 (268)
....+.+|++++|+|+||||||||+++|+|+. +|++|.++++|.+... .. .+..
T Consensus 19 vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 98 (227)
T cd03260 19 ISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIY 98 (227)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchhccccHH
Confidence 34458899999999999999999999999999 9999999998865311 00 1111
Q ss_pred cccch----h-------hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhh
Q 024413 116 ANIDI----R-------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSA 184 (268)
Q Consensus 116 ~~~~~----~-------~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~ 184 (268)
+++.. . ...++.++++.+++.........+..|||||+||++||+|++.+|+++|+|||+..-+.....
T Consensus 99 e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~ 178 (227)
T cd03260 99 DNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTA 178 (227)
T ss_pred HHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence 11111 0 123456788888887432222004889999999999999999999999999998754322222
Q ss_pred HHHHHHHHHhccCCcEEEEEEcC
Q 024413 185 SGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 185 ~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
....+...++.. ..+|+..+|.
T Consensus 179 ~l~~~l~~~~~~-~tii~~sH~~ 200 (227)
T cd03260 179 KIEELIAELKKE-YTIVIVTHNM 200 (227)
T ss_pred HHHHHHHHHhhC-cEEEEEeccH
Confidence 333333333333 4455554554
No 119
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=5.5e-21 Score=170.54 Aligned_cols=145 Identities=12% Similarity=-0.004 Sum_probs=101.3
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC----------Cc-----------ccccccc
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM----------TL-----------PFAANID 119 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~----------~~-----------~~~~~~~ 119 (268)
.....+.+|++++|+|+||||||||+++|+|..+|++|.++++|.+.... .+ +..+++.
T Consensus 25 ~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~ 104 (279)
T PRK13635 25 DVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVA 104 (279)
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHh
Confidence 33445899999999999999999999999999999999999999764210 00 1111111
Q ss_pred h-------h---hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHH
Q 024413 120 I-------R---DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAII 189 (268)
Q Consensus 120 ~-------~---~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i 189 (268)
. . ...++.++++.++|....... +..|||||+||++||+|++.+|+++|+|||....+.........+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~--~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~ 182 (279)
T PRK13635 105 FGLENIGVPREEMVERVDQALRQVGMEDFLNRE--PHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLET 182 (279)
T ss_pred hhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCC--cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 1 0 123467788899997655544 899999999999999999999999999999875432222233333
Q ss_pred HHHHhcc-CCcEEEEEEcC
Q 024413 190 TEAFAST-FPTVVTYVVDT 207 (268)
Q Consensus 190 ~~~~~~~-~~d~vv~vvD~ 207 (268)
...+... ...+++..+|.
T Consensus 183 l~~l~~~~~~tilivsH~~ 201 (279)
T PRK13635 183 VRQLKEQKGITVLSITHDL 201 (279)
T ss_pred HHHHHHcCCCEEEEEecCH
Confidence 3333333 33455554554
No 120
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.85 E-value=1.3e-20 Score=161.68 Aligned_cols=145 Identities=12% Similarity=0.007 Sum_probs=100.7
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC-------CCcc----------cccccch---
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV-------MTLP----------FAANIDI--- 120 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~-------~~~~----------~~~~~~~--- 120 (268)
.....+.+|++++|+|+||||||||+++|+|.++|++|.+.++|.+... ..++ ..+++..
T Consensus 29 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~ 108 (214)
T PRK13543 29 PLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCG 108 (214)
T ss_pred cceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHHHHHHH
Confidence 3445589999999999999999999999999999999999998864321 0111 1111100
Q ss_pred ----hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhcc
Q 024413 121 ----RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAST 196 (268)
Q Consensus 121 ----~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~ 196 (268)
.....+.++++.+++....... +..||+||+||+++|++++.+|+++|+|||+..-+.........+...+...
T Consensus 109 ~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 186 (214)
T PRK13543 109 LHGRRAKQMPGSALAIVGLAGYEDTL--VRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRG 186 (214)
T ss_pred hcCCcHHHHHHHHHHHcCChhhccCC--hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC
Confidence 0122346678888887554444 8999999999999999999999999999998754322222333333333334
Q ss_pred CCcEEEEEEcC
Q 024413 197 FPTVVTYVVDT 207 (268)
Q Consensus 197 ~~d~vv~vvD~ 207 (268)
...+++..+|.
T Consensus 187 ~~tiii~sH~~ 197 (214)
T PRK13543 187 GGAALVTTHGA 197 (214)
T ss_pred CCEEEEEecCh
Confidence 45556655665
No 121
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.85 E-value=9.8e-21 Score=164.88 Aligned_cols=145 Identities=14% Similarity=-0.004 Sum_probs=99.0
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC---------CCcc-----cccccchh-----
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV---------MTLP-----FAANIDIR----- 121 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~---------~~~~-----~~~~~~~~----- 121 (268)
.....+++|++++|+|+||||||||+++|+|+.+|++|.+++.+.+... ..++ ....++..
T Consensus 39 ~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~ 118 (236)
T cd03267 39 GISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYL 118 (236)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHH
Confidence 3445589999999999999999999999999999999999998764210 0000 00111110
Q ss_pred -----------hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHH
Q 024413 122 -----------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIIT 190 (268)
Q Consensus 122 -----------~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~ 190 (268)
....+.++++.+++....... +..||+||+||+++|++++.+|+++|+|||+..-+.........+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l 196 (236)
T cd03267 119 LAAIYDLPPARFKKRLDELSELLDLEELLDTP--VRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFL 196 (236)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCChhHhcCC--hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHH
Confidence 012345678888887544443 8899999999999999999999999999998754322223333333
Q ss_pred HHHhcc-CCcEEEEEEcC
Q 024413 191 EAFAST-FPTVVTYVVDT 207 (268)
Q Consensus 191 ~~~~~~-~~d~vv~vvD~ 207 (268)
..++.. ...+++..+|.
T Consensus 197 ~~~~~~~~~tiiivsH~~ 214 (236)
T cd03267 197 KEYNRERGTTVLLTSHYM 214 (236)
T ss_pred HHHHhcCCCEEEEEecCH
Confidence 344332 34555555554
No 122
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.85 E-value=8.6e-21 Score=163.84 Aligned_cols=145 Identities=12% Similarity=-0.012 Sum_probs=96.8
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC-------------CCcccc------------
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV-------------MTLPFA------------ 115 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~-------------~~~~~~------------ 115 (268)
.....+++|++++|+||||||||||+++|+|..+|++|.++++|.++.. ..++..
T Consensus 23 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~ 102 (228)
T cd03257 23 DVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIG 102 (228)
T ss_pred CceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCcCCHH
Confidence 3345589999999999999999999999999999999999998865321 000111
Q ss_pred cccch----h-----hH--HH-HHHHHHHcCCC-CCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhh
Q 024413 116 ANIDI----R-----DT--IR-YKEVMKQFNLG-PNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTW 182 (268)
Q Consensus 116 ~~~~~----~-----~~--~~-~~~~l~~~~l~-~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~ 182 (268)
+++.. . .. .. ..++++.+++. ...... +..|||||+||++||++++.+|+++|+|||+..-+...
T Consensus 103 ~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~ 180 (228)
T cd03257 103 EQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRY--PHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSV 180 (228)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCC--chhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHH
Confidence 11110 0 00 11 13677788885 233333 78999999999999999999999999999987543222
Q ss_pred hhHHHHHHHHHhcc-CCcEEEEEEcC
Q 024413 183 SASGAIITEAFAST-FPTVVTYVVDT 207 (268)
Q Consensus 183 ~~~~~~i~~~~~~~-~~d~vv~vvD~ 207 (268)
......+...+... ...+++..+|.
T Consensus 181 ~~~l~~~l~~~~~~~~~tii~~sH~~ 206 (228)
T cd03257 181 QAQILDLLKKLQEELGLTLLFITHDL 206 (228)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 22222333333332 34556655664
No 123
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=1e-20 Score=169.58 Aligned_cols=144 Identities=14% Similarity=-0.006 Sum_probs=99.1
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC--------------CCccc-----------c
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV--------------MTLPF-----------A 115 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~--------------~~~~~-----------~ 115 (268)
.....+.+|++++|+|+||||||||+++|+|+++|++|.++++|.+... ..+.. .
T Consensus 24 ~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~ 103 (288)
T PRK13643 24 DIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVL 103 (288)
T ss_pred eeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhcccchHH
Confidence 4445589999999999999999999999999999999999999876420 00111 0
Q ss_pred cccch--h--------hHHHHHHHHHHcCCCC-CCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc-hhhhh
Q 024413 116 ANIDI--R--------DTIRYKEVMKQFNLGP-NGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE-IFTWS 183 (268)
Q Consensus 116 ~~~~~--~--------~~~~~~~~l~~~~l~~-~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~-~~~~~ 183 (268)
+++.. . ...++.++++.++|.. ... ..+..|||||+||++||++++.+|+++|+|||+... +.+..
T Consensus 104 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~--~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~ 181 (288)
T PRK13643 104 KDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWE--KSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARI 181 (288)
T ss_pred HHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhcc--CCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHH
Confidence 11110 0 1224667888899863 333 338999999999999999999999999999998754 33323
Q ss_pred hHHHHHHHHHhccCCcEEEEEEcC
Q 024413 184 ASGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 184 ~~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
... .+...++.....+++..+|.
T Consensus 182 ~l~-~~l~~l~~~g~til~vtHd~ 204 (288)
T PRK13643 182 EMM-QLFESIHQSGQTVVLVTHLM 204 (288)
T ss_pred HHH-HHHHHHHHCCCEEEEEecCH
Confidence 233 33333333333455554554
No 124
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=8.3e-21 Score=169.18 Aligned_cols=117 Identities=11% Similarity=0.059 Sum_probs=89.6
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC----------Cc-----------ccccccc
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM----------TL-----------PFAANID 119 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~----------~~-----------~~~~~~~ 119 (268)
.....+.+|++++|+|+||||||||+++|+|+.+|++|.++++|.+.... .+ +..+++.
T Consensus 22 ~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~ 101 (277)
T PRK13652 22 NINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIA 101 (277)
T ss_pred EeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHHHHHH
Confidence 34455899999999999999999999999999999999999988754210 00 1111111
Q ss_pred h-------h---hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 120 I-------R---DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 120 ~-------~---~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
. . ....+.++++.+++.+..... +..|||||+||++||+|++.+|+++|+|||+...+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD 169 (277)
T PRK13652 102 FGPINLGLDEETVAHRVSSALHMLGLEELRDRV--PHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLD 169 (277)
T ss_pred hHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCC--cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 0 0 012467788999997654444 89999999999999999999999999999987543
No 125
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.85 E-value=9.2e-21 Score=168.44 Aligned_cols=144 Identities=14% Similarity=0.079 Sum_probs=98.5
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCC-------CCCcc------------cccccc---
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-------VMTLP------------FAANID--- 119 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~-------~~~~~------------~~~~~~--- 119 (268)
....+.+|++++|+|+||||||||+++|+|+++|++|.++++|.+.. ...++ ..+++.
T Consensus 26 vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~ 105 (272)
T PRK15056 26 ASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGR 105 (272)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEeccccccccCCCcchhhheeccc
Confidence 34458899999999999999999999999999999999999885421 00010 011110
Q ss_pred -----------hhhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHH
Q 024413 120 -----------IRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAI 188 (268)
Q Consensus 120 -----------~~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~ 188 (268)
......+.++++.+++...... .+..|||||+||++||+|++.+|+++|+|||...-+.........
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~--~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~ 183 (272)
T PRK15056 106 YGHMGWLRRAKKRDRQIVTAALARVDMVEFRHR--QIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIIS 183 (272)
T ss_pred ccccccccCCCHHHHHHHHHHHHHcCChhHhcC--CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH
Confidence 0112345678889998754443 388999999999999999999999999999987543222233333
Q ss_pred HHHHHhccCCcEEEEEEcC
Q 024413 189 ITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 189 i~~~~~~~~~d~vv~vvD~ 207 (268)
+...++.....+++..+|.
T Consensus 184 ~L~~~~~~g~tviivsH~~ 202 (272)
T PRK15056 184 LLRELRDEGKTMLVSTHNL 202 (272)
T ss_pred HHHHHHhCCCEEEEEeCCH
Confidence 3334433333444444444
No 126
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.85 E-value=1.1e-20 Score=166.49 Aligned_cols=144 Identities=15% Similarity=0.093 Sum_probs=99.7
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC-----------------------CC-------
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV-----------------------MT------- 111 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~-----------------------~~------- 111 (268)
....+.+|++++|+|+||||||||+++|+|..+|++|.+++++.+... ..
T Consensus 24 is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l 103 (257)
T PRK10619 24 VSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNL 103 (257)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEEEecCccc
Confidence 344588999999999999999999999999999999999998864310 00
Q ss_pred ---cccccccch-----------hhHHHHHHHHHHcCCCCCC-CcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 024413 112 ---LPFAANIDI-----------RDTIRYKEVMKQFNLGPNG-GILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQ 176 (268)
Q Consensus 112 ---~~~~~~~~~-----------~~~~~~~~~l~~~~l~~~~-~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~ 176 (268)
.+..+++.. ....++.++++.+++.... .. .+..|||||+||++||+|++.+|+++|+|||..
T Consensus 104 ~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~~LS~G~~qrv~laral~~~p~llllDEPt~ 181 (257)
T PRK10619 104 WSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGK--YPVHLSGGQQQRVSIARALAMEPEVLLFDEPTS 181 (257)
T ss_pred CCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhC--CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 111112111 0123456788999987542 32 378999999999999999999999999999987
Q ss_pred cchhhhhhHHHHHHHHHhccCCcEEEEEEcC
Q 024413 177 IEIFTWSASGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 177 ~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
..+.........+.+.++.....+++..+|.
T Consensus 182 ~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~ 212 (257)
T PRK10619 182 ALDPELVGEVLRIMQQLAEEGKTMVVVTHEM 212 (257)
T ss_pred cCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 5432222333333344433334555555554
No 127
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.85 E-value=1e-20 Score=181.66 Aligned_cols=147 Identities=16% Similarity=0.129 Sum_probs=103.7
Q ss_pred CCcccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC-----------CC-------------ccc
Q 024413 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV-----------MT-------------LPF 114 (268)
Q Consensus 59 ~~~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~-----------~~-------------~~~ 114 (268)
.......+++|++++|+||||||||||+++|+|..+|++|.|+++|.+... .. .+.
T Consensus 269 l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv 348 (501)
T PRK11288 269 REPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSV 348 (501)
T ss_pred ccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCH
Confidence 344455689999999999999999999999999999999999998754310 00 111
Q ss_pred ccccch----------------hhHHHHHHHHHHcCCC-CCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCc
Q 024413 115 AANIDI----------------RDTIRYKEVMKQFNLG-PNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQI 177 (268)
Q Consensus 115 ~~~~~~----------------~~~~~~~~~l~~~~l~-~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~ 177 (268)
.+++.. .....+.++++.+++. .... +.+..||||||||++||++++.+|+++|+|||+..
T Consensus 349 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~ 426 (501)
T PRK11288 349 ADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSRE--QLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRG 426 (501)
T ss_pred HHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCcc--CccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCC
Confidence 112111 0112466788899984 3333 33899999999999999999999999999999886
Q ss_pred chhhhhhHHHHHHHHHhccCCcEEEEEEcC
Q 024413 178 EIFTWSASGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 178 ~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
-+.........++..++.....+|+..+|.
T Consensus 427 LD~~~~~~l~~~l~~l~~~g~tviivsHd~ 456 (501)
T PRK11288 427 IDVGAKHEIYNVIYELAAQGVAVLFVSSDL 456 (501)
T ss_pred CCHhHHHHHHHHHHHHHhCCCEEEEECCCH
Confidence 443333333334444444445677776776
No 128
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=1.1e-20 Score=168.44 Aligned_cols=144 Identities=10% Similarity=-0.083 Sum_probs=96.9
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC--------------CCcccc-----------c
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV--------------MTLPFA-----------A 116 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~--------------~~~~~~-----------~ 116 (268)
....+++|++++|+|+||||||||+++|+|+.+|++|.|+++|.+... ..++.. +
T Consensus 26 is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e 105 (280)
T PRK13649 26 VNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLK 105 (280)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhccccHHH
Confidence 344588999999999999999999999999999999999998865321 011111 1
Q ss_pred ccch--------h--hHHHHHHHHHHcCCCC-CCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhH
Q 024413 117 NIDI--------R--DTIRYKEVMKQFNLGP-NGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSAS 185 (268)
Q Consensus 117 ~~~~--------~--~~~~~~~~l~~~~l~~-~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~ 185 (268)
++.. . ....+.++++.+++.. .... .+..|||||+||++||+|++.+|+++|+|||+..-+......
T Consensus 106 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~ 183 (280)
T PRK13649 106 DVAFGPQNFGVSQEEAEALAREKLALVGISESLFEK--NPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKE 183 (280)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhC--CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 1110 0 0123456778888863 2233 388999999999999999999999999999987543222222
Q ss_pred HHHHHHHHhccCCcEEEEEEcC
Q 024413 186 GAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 186 ~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
...+...++.....+++..+|.
T Consensus 184 l~~~l~~~~~~~~tiiivsH~~ 205 (280)
T PRK13649 184 LMTLFKKLHQSGMTIVLVTHLM 205 (280)
T ss_pred HHHHHHHHHHCCCEEEEEeccH
Confidence 2233333333334555555554
No 129
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=1e-20 Score=169.66 Aligned_cols=117 Identities=12% Similarity=-0.006 Sum_probs=88.9
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC--------------CCcccc-----------
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV--------------MTLPFA----------- 115 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~--------------~~~~~~----------- 115 (268)
.....+++|++++|+|+||||||||+++|+|+.+|++|.|.++|.+... ..++..
T Consensus 25 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~ 104 (290)
T PRK13634 25 DVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVE 104 (290)
T ss_pred eEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhhhhHH
Confidence 3445589999999999999999999999999999999999999875421 011111
Q ss_pred cccch--------h--hHHHHHHHHHHcCCCC-CCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 116 ANIDI--------R--DTIRYKEVMKQFNLGP-NGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 116 ~~~~~--------~--~~~~~~~~l~~~~l~~-~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
+++.. . ....+.++++.++|.. ..... +..|||||+||++||++++.+|+++|+|||+...+
T Consensus 105 eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~--~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD 177 (290)
T PRK13634 105 KDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARS--PFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLD 177 (290)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCC--cccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCC
Confidence 11110 0 1234677888999963 23333 89999999999999999999999999999987543
No 130
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=7.8e-21 Score=168.26 Aligned_cols=116 Identities=16% Similarity=0.095 Sum_probs=87.9
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC--------------CC------cccccccch-
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV--------------MT------LPFAANIDI- 120 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~--------------~~------~~~~~~~~~- 120 (268)
..+.+++|++++|+|+||||||||+++|+|+++|++|.++++|.+... .. .+..+++..
T Consensus 30 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~ 109 (265)
T PRK10575 30 LSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIG 109 (265)
T ss_pred eeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhC
Confidence 344588999999999999999999999999999999999998865310 00 111111110
Q ss_pred -------------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 121 -------------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 121 -------------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
.....+.++++.+++....... +..|||||+||+++|+|++.+|+++|+|||+..-+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD 179 (265)
T PRK10575 110 RYPWHGALGRFGAADREKVEEAISLVGLKPLAHRL--VDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALD 179 (265)
T ss_pred cccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC--cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 0123466788888886543333 88999999999999999999999999999987543
No 131
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.85 E-value=1.3e-20 Score=180.93 Aligned_cols=145 Identities=14% Similarity=0.090 Sum_probs=100.6
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC-----------C----------Ccccccccc
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV-----------M----------TLPFAANID 119 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~-----------~----------~~~~~~~~~ 119 (268)
.....+.+|++++|+||||||||||+++|+|+.+|++|.|+++|.+... . ..+..+++.
T Consensus 22 ~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~ 101 (501)
T PRK10762 22 GAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIF 101 (501)
T ss_pred eeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHHHHhh
Confidence 3445588999999999999999999999999999999999998865311 0 011111111
Q ss_pred h-------------h-hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhH
Q 024413 120 I-------------R-DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSAS 185 (268)
Q Consensus 120 ~-------------~-~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~ 185 (268)
. . ...++.++++.+++....... +.+|||||+||++||+|++.+|+++|+|||+..-+......
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~ 179 (501)
T PRK10762 102 LGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKL--VGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETES 179 (501)
T ss_pred hccccccccCccCHHHHHHHHHHHHHHcCCCCCccCc--hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHH
Confidence 0 0 123467789999997654444 89999999999999999999999999999987543222223
Q ss_pred HHHHHHHHhccCCcEEEEEEcC
Q 024413 186 GAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 186 ~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
...+...++.....+|+..+|.
T Consensus 180 l~~~l~~l~~~~~tvii~sHd~ 201 (501)
T PRK10762 180 LFRVIRELKSQGRGIVYISHRL 201 (501)
T ss_pred HHHHHHHHHHCCCEEEEEeCCH
Confidence 3333333333333444444554
No 132
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.85 E-value=6.9e-21 Score=159.89 Aligned_cols=145 Identities=12% Similarity=0.060 Sum_probs=96.6
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcc-----cEEEEecccCCCCC---------------------ccc
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRN-----IRGYVMNLDPAVMT---------------------LPF 114 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~-----g~i~i~~~~~~~~~---------------------~~~ 114 (268)
.....++++.++++|||+||||||||++|..+..... |.|.++|.+..... .+.
T Consensus 25 ~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp~SI 104 (253)
T COG1117 25 DINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSI 104 (253)
T ss_pred cCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCCchH
Confidence 3445589999999999999999999999999987754 99999998764321 111
Q ss_pred ccccch-------hh---HHHHHHHHHHcCCCCC--CCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCc-chhh
Q 024413 115 AANIDI-------RD---TIRYKEVMKQFNLGPN--GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQI-EIFT 181 (268)
Q Consensus 115 ~~~~~~-------~~---~~~~~~~l~~~~l~~~--~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~-~~~~ 181 (268)
++|+.. .+ ...++..++...|+.. ..+..++..|||||+||++||||++.+|+++|+|||+.. ||-+
T Consensus 105 ydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIs 184 (253)
T COG1117 105 YDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPIS 184 (253)
T ss_pred HHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchh
Confidence 222211 11 1123444555555432 233345778999999999999999999999999999874 5532
Q ss_pred hhhHHHHHHHHHhccCCcEEEEEEcC
Q 024413 182 WSASGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 182 ~~~~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
......++..++ ..-.+|++.+..
T Consensus 185 -T~kIEeLi~eLk-~~yTIviVTHnm 208 (253)
T COG1117 185 -TLKIEELITELK-KKYTIVIVTHNM 208 (253)
T ss_pred -HHHHHHHHHHHH-hccEEEEEeCCH
Confidence 233334444444 224555555554
No 133
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.85 E-value=1.3e-20 Score=181.31 Aligned_cols=144 Identities=13% Similarity=0.062 Sum_probs=99.1
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC-----------CC----------cccccccc
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV-----------MT----------LPFAANID 119 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~-----------~~----------~~~~~~~~ 119 (268)
.....+.+|++++|+||||||||||+++|+|+.+|++|.|++.|.+... .. .+..+++.
T Consensus 23 ~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~ 102 (510)
T PRK09700 23 SVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLY 102 (510)
T ss_pred eeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHHHHhh
Confidence 4445589999999999999999999999999999999999998864311 00 11111111
Q ss_pred h-----------------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhh
Q 024413 120 I-----------------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTW 182 (268)
Q Consensus 120 ~-----------------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~ 182 (268)
. ....++.++++.+++....... +.+|||||+||++||++++.+|+++|+|||+..-+...
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~ 180 (510)
T PRK09700 103 IGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEK--VANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKE 180 (510)
T ss_pred hccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccc--hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Confidence 0 0123466788999997554444 89999999999999999999999999999987543222
Q ss_pred hhHHHHHHHHHhccCCcEEEEEEc
Q 024413 183 SASGAIITEAFASTFPTVVTYVVD 206 (268)
Q Consensus 183 ~~~~~~i~~~~~~~~~d~vv~vvD 206 (268)
......+...++.....+|+..+|
T Consensus 181 ~~~l~~~l~~l~~~g~tiiivsHd 204 (510)
T PRK09700 181 VDYLFLIMNQLRKEGTAIVYISHK 204 (510)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCC
Confidence 233333333333332334444444
No 134
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=1e-20 Score=166.45 Aligned_cols=143 Identities=16% Similarity=0.102 Sum_probs=98.0
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCC----------C----C------Ccccccccch-
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA----------V----M------TLPFAANIDI- 120 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~----------~----~------~~~~~~~~~~- 120 (268)
....+++|++++|+|+||||||||+++|+|+.+|++|.+.+++.+.. . . ..+..+++..
T Consensus 21 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~ 100 (255)
T PRK11231 21 LSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYG 100 (255)
T ss_pred eeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHHHHHHhc
Confidence 34458899999999999999999999999999999999999886421 0 0 0111111111
Q ss_pred -------------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc-hhhhhhHH
Q 024413 121 -------------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE-IFTWSASG 186 (268)
Q Consensus 121 -------------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~-~~~~~~~~ 186 (268)
.....+.++++.+++....... +..|||||+||++||+|++.+|+++|+|||...- +.......
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~ 178 (255)
T PRK11231 101 RSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRR--LTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELM 178 (255)
T ss_pred cchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCC--cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH
Confidence 0123456778888886544433 8899999999999999999999999999998754 32222222
Q ss_pred HHHHHHHhccCCcEEEEEEcC
Q 024413 187 AIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 187 ~~i~~~~~~~~~d~vv~vvD~ 207 (268)
..+ ..++.....+|+..+|.
T Consensus 179 ~~l-~~l~~~~~tiii~tH~~ 198 (255)
T PRK11231 179 RLM-RELNTQGKTVVTVLHDL 198 (255)
T ss_pred HHH-HHHHHCCCEEEEEECCH
Confidence 333 33333334555555554
No 135
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.85 E-value=1.3e-20 Score=154.60 Aligned_cols=158 Identities=12% Similarity=0.131 Sum_probs=110.4
Q ss_pred HHHHHhccccccccccCCCCCCcccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCC------c
Q 024413 39 EEITESMDKLHIEESSSGLAGSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT------L 112 (268)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~------~ 112 (268)
+.+...++..+... ......++|.++.|||.+||||||+++||.-+..|..|.|.+.|....... .
T Consensus 10 ~dlHK~~G~~eVLK--------GvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~ 81 (256)
T COG4598 10 EDLHKRYGEHEVLK--------GVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLK 81 (256)
T ss_pred hHHHhhcccchhhc--------ceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCee
Confidence 44555555554422 233447899999999999999999999999999999999999987542110 0
Q ss_pred c---------------cccccch-----------------------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHH
Q 024413 113 P---------------FAANIDI-----------------------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDE 154 (268)
Q Consensus 113 ~---------------~~~~~~~-----------------------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~q 154 (268)
+ ...++.. ....++..++..+|+...... +|..|||||+|
T Consensus 82 ~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~--YP~~LSGGQQQ 159 (256)
T COG4598 82 PADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADA--YPAHLSGGQQQ 159 (256)
T ss_pred eCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhc--CccccCchHHH
Confidence 0 0001111 123456678899999877764 49999999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCc-chhhhhhHHHHHHHHHhccCCcEEEEEEcC
Q 024413 155 VISLIERRADHLDYVLVDTPGQI-EIFTWSASGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 155 r~~ia~al~~~~~illlDePG~~-~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
|++|||||+.+|+++|+|||+-. +|. ..-+.-.+...++.+....+++.+..
T Consensus 160 R~aIARaLameP~vmLFDEPTSALDPE-lVgEVLkv~~~LAeEgrTMv~VTHEM 212 (256)
T COG4598 160 RVAIARALAMEPEVMLFDEPTSALDPE-LVGEVLKVMQDLAEEGRTMVVVTHEM 212 (256)
T ss_pred HHHHHHHHhcCCceEeecCCcccCCHH-HHHHHHHHHHHHHHhCCeEEEEeeeh
Confidence 99999999999999999999875 431 11222344444556666777766655
No 136
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.85 E-value=1.2e-20 Score=181.59 Aligned_cols=146 Identities=12% Similarity=0.044 Sum_probs=102.2
Q ss_pred CcccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCC-----------CCCccc-------------c
Q 024413 60 SSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-----------VMTLPF-------------A 115 (268)
Q Consensus 60 ~~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~-----------~~~~~~-------------~ 115 (268)
......+++|++++|+||||||||||+++|+|+.+|++|.|+++|.+.. ...++. .
T Consensus 280 ~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~ 359 (510)
T PRK09700 280 RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIA 359 (510)
T ss_pred cceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHH
Confidence 3445568999999999999999999999999999999999999885431 011111 1
Q ss_pred cccchh-------------------hHHHHHHHHHHcCCC-CCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCC
Q 024413 116 ANIDIR-------------------DTIRYKEVMKQFNLG-PNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (268)
Q Consensus 116 ~~~~~~-------------------~~~~~~~~l~~~~l~-~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG 175 (268)
+++... ....+.++++.+++. ..... .+.+||||||||++||++++.+|+++|+|||+
T Consensus 360 e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt 437 (510)
T PRK09700 360 QNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQ--NITELSGGNQQKVLISKWLCCCPEVIIFDEPT 437 (510)
T ss_pred HHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccC--ccccCChHHHHHHHHHHHHhcCCCEEEECCCC
Confidence 111100 112356788999985 33333 38999999999999999999999999999998
Q ss_pred CcchhhhhhHHHHHHHHHhccCCcEEEEEEcC
Q 024413 176 QIEIFTWSASGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 176 ~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
..-+.........+.+.++.....+|+..+|.
T Consensus 438 ~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~ 469 (510)
T PRK09700 438 RGIDVGAKAEIYKVMRQLADDGKVILMVSSEL 469 (510)
T ss_pred CCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 75443333333344444444444566666665
No 137
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=1.1e-20 Score=169.07 Aligned_cols=145 Identities=11% Similarity=0.007 Sum_probs=98.7
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC--------------CCccc-----------c
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV--------------MTLPF-----------A 115 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~--------------~~~~~-----------~ 115 (268)
.....+++|++++|+|+||||||||+++|+|+..|++|.|+++|.+... ..++. .
T Consensus 25 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~ 104 (286)
T PRK13646 25 DVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVE 104 (286)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccchhhHH
Confidence 3445589999999999999999999999999999999999999865421 01111 1
Q ss_pred cccch-------h---hHHHHHHHHHHcCCC-CCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhh
Q 024413 116 ANIDI-------R---DTIRYKEVMKQFNLG-PNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSA 184 (268)
Q Consensus 116 ~~~~~-------~---~~~~~~~~l~~~~l~-~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~ 184 (268)
+++.. . ...++.++++.++|. ...... +..|||||+||++||+|++.+|+++|+|||...-+.....
T Consensus 105 e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~--~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~ 182 (286)
T PRK13646 105 REIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQS--PFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKR 182 (286)
T ss_pred HHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCC--cccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHH
Confidence 11111 0 123456788889986 333333 8899999999999999999999999999998754322222
Q ss_pred HHHHHHHHHhcc-CCcEEEEEEcC
Q 024413 185 SGAIITEAFAST-FPTVVTYVVDT 207 (268)
Q Consensus 185 ~~~~i~~~~~~~-~~d~vv~vvD~ 207 (268)
....+...++.. ...+++..+|.
T Consensus 183 ~l~~~l~~l~~~~g~tvl~vtH~~ 206 (286)
T PRK13646 183 QVMRLLKSLQTDENKTIILVSHDM 206 (286)
T ss_pred HHHHHHHHHHHhCCCEEEEEecCH
Confidence 333333333322 23444444443
No 138
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.85 E-value=1.3e-20 Score=181.25 Aligned_cols=117 Identities=10% Similarity=0.050 Sum_probs=90.2
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC-----------CCc----------ccccccc
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV-----------MTL----------PFAANID 119 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~-----------~~~----------~~~~~~~ 119 (268)
.....+.+|++++|+||||||||||+++|+|+.+|++|.|++.|.+... ..+ +..+++.
T Consensus 29 ~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~ 108 (510)
T PRK15439 29 GIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENIL 108 (510)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhh
Confidence 3444589999999999999999999999999999999999998865321 011 1111111
Q ss_pred h------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 120 I------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 120 ~------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
. ....++.++++.+++....... +..||||||||++||+|++.+|+++|+|||+..-+
T Consensus 109 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD 172 (510)
T PRK15439 109 FGLPKRQASMQKMKQLLAALGCQLDLDSS--AGSLEVADRQIVEILRGLMRDSRILILDEPTASLT 172 (510)
T ss_pred cccccchHHHHHHHHHHHHcCCCccccCC--hhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCC
Confidence 1 1124567789999997554444 89999999999999999999999999999987543
No 139
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.85 E-value=1.3e-20 Score=166.32 Aligned_cols=145 Identities=14% Similarity=0.098 Sum_probs=98.9
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC----------CCc----------ccccccch
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV----------MTL----------PFAANIDI 120 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~----------~~~----------~~~~~~~~ 120 (268)
.....+++|++++|+|+||||||||+++|+|+.+|++|.++++|.+... ..+ +..+++..
T Consensus 20 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~ 99 (258)
T PRK13548 20 DVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAM 99 (258)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHHHHHh
Confidence 3344588999999999999999999999999999999999998864310 000 11111111
Q ss_pred ----------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHh------cCCCEEEEeCCCCcc-hhhhh
Q 024413 121 ----------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRA------DHLDYVLVDTPGQIE-IFTWS 183 (268)
Q Consensus 121 ----------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~------~~~~illlDePG~~~-~~~~~ 183 (268)
.....+.++++.+++....... +..|||||+||++||+|++ .+|+++|+|||+... +.+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~ 177 (258)
T PRK13548 100 GRAPHGLSRAEDDALVAAALAQVDLAHLAGRD--YPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQH 177 (258)
T ss_pred hhcccCCCcHHHHHHHHHHHHHcCCHhHhcCC--cccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHH
Confidence 0123456788889987544444 8899999999999999999 599999999998754 33333
Q ss_pred hHHHHHHHHHhccCCcEEEEEEcC
Q 024413 184 ASGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 184 ~~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
.....+.+..+.....+|+..+|.
T Consensus 178 ~l~~~l~~~~~~~~~tiii~sH~~ 201 (258)
T PRK13548 178 HVLRLARQLAHERGLAVIVVLHDL 201 (258)
T ss_pred HHHHHHHHHHHhcCCEEEEEECCH
Confidence 333333332213334555555554
No 140
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=1e-20 Score=168.00 Aligned_cols=145 Identities=10% Similarity=0.008 Sum_probs=99.4
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC----------Ccc-----------cccccc
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM----------TLP-----------FAANID 119 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~----------~~~-----------~~~~~~ 119 (268)
.....+.+|++++|+||||||||||+++|+|+.+|++|.|+++|.+.... .++ ..+++.
T Consensus 27 ~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~ 106 (271)
T PRK13632 27 NVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIA 106 (271)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHH
Confidence 33445899999999999999999999999999999999999988764210 011 111111
Q ss_pred h-------h---hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHH
Q 024413 120 I-------R---DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAII 189 (268)
Q Consensus 120 ~-------~---~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i 189 (268)
. . ....+.++++.+++....... +..|||||+||++||+|++.+|+++|+|||+..-+.........+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~ 184 (271)
T PRK13632 107 FGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKE--PQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKI 184 (271)
T ss_pred hHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC--cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 0 0 112356678889987554444 889999999999999999999999999999875432222222233
Q ss_pred HHHHhcc-CCcEEEEEEcC
Q 024413 190 TEAFAST-FPTVVTYVVDT 207 (268)
Q Consensus 190 ~~~~~~~-~~d~vv~vvD~ 207 (268)
...++.. ...+++..+|.
T Consensus 185 l~~~~~~~~~tiii~sH~~ 203 (271)
T PRK13632 185 MVDLRKTRKKTLISITHDM 203 (271)
T ss_pred HHHHHHhcCcEEEEEEech
Confidence 3333332 24555555554
No 141
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.85 E-value=6.4e-21 Score=165.20 Aligned_cols=147 Identities=15% Similarity=0.009 Sum_probs=107.4
Q ss_pred CCcccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCC--------------------ccccccc
Q 024413 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT--------------------LPFAANI 118 (268)
Q Consensus 59 ~~~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~--------------------~~~~~~~ 118 (268)
.....+.+++|.+++++|+|||||||++++|+|...|++|.+.|.|.+|.... ++..+.+
T Consensus 40 Vqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~ 119 (325)
T COG4586 40 VQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSL 119 (325)
T ss_pred hheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhH
Confidence 44455569999999999999999999999999999999999999999876421 1111111
Q ss_pred ch-------h---hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhh-HHH
Q 024413 119 DI-------R---DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSA-SGA 187 (268)
Q Consensus 119 ~~-------~---~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~-~~~ 187 (268)
.+ . -..+.+.+.+.++|++..... ++.||-|||.|+.+|.+|.++|+++|||||++..+..-.. ...
T Consensus 120 ~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~--vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~ 197 (325)
T COG4586 120 EVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWP--VRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIRE 197 (325)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhh--hhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHH
Confidence 11 1 134567788899998776666 9999999999999999999999999999999976533222 222
Q ss_pred HHHHHHhccCCcEEEEEEcC
Q 024413 188 IITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 188 ~i~~~~~~~~~d~vv~vvD~ 207 (268)
.+.++-+...+.+++..++-
T Consensus 198 Flke~n~~~~aTVllTTH~~ 217 (325)
T COG4586 198 FLKEYNEERQATVLLTTHIF 217 (325)
T ss_pred HHHHHHHhhCceEEEEecch
Confidence 33333233445666555554
No 142
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.85 E-value=1.1e-20 Score=167.38 Aligned_cols=116 Identities=10% Similarity=0.050 Sum_probs=88.3
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC--------------C------Ccccccccch
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV--------------M------TLPFAANIDI 120 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~--------------~------~~~~~~~~~~ 120 (268)
.....+.+|++++|+|+||||||||+++|+|..++++|.+.++|.+... . ..+..+++..
T Consensus 25 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~ 104 (265)
T PRK10253 25 NLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVAR 104 (265)
T ss_pred ecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHh
Confidence 3344588999999999999999999999999999999999998865310 0 0111111110
Q ss_pred --------------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc
Q 024413 121 --------------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE 178 (268)
Q Consensus 121 --------------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~ 178 (268)
.....+.++++.+++....... +..|||||+||++||+|++.+|+++|+|||+..-
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~Gq~qrv~laral~~~p~llllDEPt~gL 174 (265)
T PRK10253 105 GRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQS--VDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWL 174 (265)
T ss_pred CcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC--cccCChHHHHHHHHHHHHhcCCCEEEEeCccccC
Confidence 0123466788889987544333 8999999999999999999999999999998754
No 143
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=1e-20 Score=165.16 Aligned_cols=145 Identities=13% Similarity=0.081 Sum_probs=99.3
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC----------CCc---------ccccccch-
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV----------MTL---------PFAANIDI- 120 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~----------~~~---------~~~~~~~~- 120 (268)
.....+.+|++++|+|+||||||||+++|+|..+|++|.|.++|.+... ..+ +..+++..
T Consensus 21 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~ 100 (241)
T PRK14250 21 DISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYG 100 (241)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhchhhHHHHHhcc
Confidence 3344588999999999999999999999999999999999998865321 000 11111111
Q ss_pred -----hhHHHHHHHHHHcCCCC-CCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHh
Q 024413 121 -----RDTIRYKEVMKQFNLGP-NGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFA 194 (268)
Q Consensus 121 -----~~~~~~~~~l~~~~l~~-~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~ 194 (268)
....++.++++.+++.. .... .+..|||||+||++||+|++.+|+++|+|||...-+.........+...++
T Consensus 101 ~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 178 (241)
T PRK14250 101 PMLKGEKNVDVEYYLSIVGLNKEYATR--DVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLK 178 (241)
T ss_pred hhhcCcHHHHHHHHHHHcCCCHHHhhC--CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 11235667888999862 2233 388999999999999999999999999999987543222222223333333
Q ss_pred cc-CCcEEEEEEcC
Q 024413 195 ST-FPTVVTYVVDT 207 (268)
Q Consensus 195 ~~-~~d~vv~vvD~ 207 (268)
.. ...+++..+|.
T Consensus 179 ~~~g~tii~~sH~~ 192 (241)
T PRK14250 179 NKMNLTVIWITHNM 192 (241)
T ss_pred HhCCCEEEEEeccH
Confidence 32 34555555655
No 144
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.85 E-value=1.5e-20 Score=164.69 Aligned_cols=145 Identities=14% Similarity=0.052 Sum_probs=97.6
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCc-----ccEEEEecccCCC------------CCc---------cc
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSR-----NIRGYVMNLDPAV------------MTL---------PF 114 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~-----~g~i~i~~~~~~~------------~~~---------~~ 114 (268)
.....+++|++++|+|+||||||||+++|+|+.+|+ +|.++++|.+... ..+ +.
T Consensus 19 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv 98 (247)
T TIGR00972 19 NINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSI 98 (247)
T ss_pred ceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccCCCCH
Confidence 344558999999999999999999999999999988 9999998875421 000 11
Q ss_pred ccccch----h-------hHHHHHHHHHHcCCCCC--CCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc-hh
Q 024413 115 AANIDI----R-------DTIRYKEVMKQFNLGPN--GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE-IF 180 (268)
Q Consensus 115 ~~~~~~----~-------~~~~~~~~l~~~~l~~~--~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~-~~ 180 (268)
.+++.. . ....+.++++.+++.+. ......+..|||||+||++||+|++.+|+++|+|||...- +.
T Consensus 99 ~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~ 178 (247)
T TIGR00972 99 YDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPI 178 (247)
T ss_pred HHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 111111 0 01245667888898621 1122348899999999999999999999999999998754 33
Q ss_pred hhhhHHHHHHHHHhccCCcEEEEEEcC
Q 024413 181 TWSASGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 181 ~~~~~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
..... ..+...++.. ..+++..+|.
T Consensus 179 ~~~~l-~~~l~~~~~~-~tiiivsH~~ 203 (247)
T TIGR00972 179 ATGKI-EELIQELKKK-YTIVIVTHNM 203 (247)
T ss_pred HHHHH-HHHHHHHHhc-CeEEEEecCH
Confidence 22222 2333333332 4445544544
No 145
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.85 E-value=1.1e-20 Score=172.42 Aligned_cols=118 Identities=19% Similarity=0.120 Sum_probs=89.1
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC-------------C------------cccc
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM-------------T------------LPFA 115 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~-------------~------------~~~~ 115 (268)
.....+.+|++++|+|+||||||||+++|+|+..+++|.|+++|.+.... . .+..
T Consensus 39 ~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~ 118 (331)
T PRK15079 39 GVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIG 118 (331)
T ss_pred eEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHH
Confidence 44455899999999999999999999999999999999999988764210 0 0111
Q ss_pred cccc---------hh---hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 116 ANID---------IR---DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 116 ~~~~---------~~---~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
+++. .. ....+.++++.+++.+. ....++.+|||||+||++||+|++.+|+++|+|||+...+
T Consensus 119 ~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~-~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD 193 (331)
T PRK15079 119 EIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPN-LINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALD 193 (331)
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChH-HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 1110 00 12245678899999532 2234489999999999999999999999999999987544
No 146
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.84 E-value=1.2e-20 Score=180.55 Aligned_cols=144 Identities=13% Similarity=0.002 Sum_probs=99.6
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC----------CCccccc------------cc
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV----------MTLPFAA------------NI 118 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~----------~~~~~~~------------~~ 118 (268)
.....+.+|++++|+|+||||||||+++|+|+.+|++|.+.+.+.+... ..++... .+
T Consensus 21 ~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~ 100 (490)
T PRK10938 21 LPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGR 100 (490)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceeccCcchhhcccchhhccc
Confidence 3445589999999999999999999999999999999999987754311 0011000 11
Q ss_pred chh--------hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc-hhhhhhHHHHH
Q 024413 119 DIR--------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE-IFTWSASGAII 189 (268)
Q Consensus 119 ~~~--------~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~-~~~~~~~~~~i 189 (268)
... ...++.++++.+++....... +.+||||||||++||+|++.+|+++|+|||+..- +........ +
T Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~-~ 177 (490)
T PRK10938 101 TTAEIIQDEVKDPARCEQLAQQFGITALLDRR--FKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAE-L 177 (490)
T ss_pred cHHHhcccchhHHHHHHHHHHHcCCHhhhhCC--cccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHH-H
Confidence 111 234567889999997554444 8999999999999999999999999999998754 433333333 3
Q ss_pred HHHHhccCCcEEEEEEcC
Q 024413 190 TEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 190 ~~~~~~~~~d~vv~vvD~ 207 (268)
...++.....+|+..+|.
T Consensus 178 l~~~~~~g~tvii~tH~~ 195 (490)
T PRK10938 178 LASLHQSGITLVLVLNRF 195 (490)
T ss_pred HHHHHhcCCeEEEEeCCH
Confidence 333333333444444443
No 147
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.84 E-value=1.6e-20 Score=162.38 Aligned_cols=145 Identities=14% Similarity=0.044 Sum_probs=99.4
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC----------CCc---------ccccccch-
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV----------MTL---------PFAANIDI- 120 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~----------~~~---------~~~~~~~~- 120 (268)
.....+++|++++|+||||||||||+++|+|+.+|++|.+++++.+... ..+ +..+++..
T Consensus 25 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~ 104 (225)
T PRK10247 25 NISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFP 104 (225)
T ss_pred ccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEecccccccccHHHHHHhH
Confidence 3445589999999999999999999999999999999999998864321 000 11111111
Q ss_pred -------hhHHHHHHHHHHcCCCC-CCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHH
Q 024413 121 -------RDTIRYKEVMKQFNLGP-NGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEA 192 (268)
Q Consensus 121 -------~~~~~~~~~l~~~~l~~-~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~ 192 (268)
.....+.++++.+++.. ... ..+..||+||+||++||++++.+|+++|+|||+..-+.........+...
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 182 (225)
T PRK10247 105 WQIRNQQPDPAIFLDDLERFALPDTILT--KNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHR 182 (225)
T ss_pred HhhcCCChHHHHHHHHHHHcCCChHHhc--CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 11234567888998853 223 33889999999999999999999999999999875432222222333333
Q ss_pred Hhc-cCCcEEEEEEcC
Q 024413 193 FAS-TFPTVVTYVVDT 207 (268)
Q Consensus 193 ~~~-~~~d~vv~vvD~ 207 (268)
+.. ....+++..+|.
T Consensus 183 ~~~~~~~tvii~sh~~ 198 (225)
T PRK10247 183 YVREQNIAVLWVTHDK 198 (225)
T ss_pred HHHhcCCEEEEEECCh
Confidence 333 234555555554
No 148
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.84 E-value=1.4e-20 Score=165.23 Aligned_cols=144 Identities=13% Similarity=0.007 Sum_probs=98.3
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC-----------------------CC-------
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV-----------------------MT------- 111 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~-----------------------~~------- 111 (268)
....+.+|++++|+|+||||||||+++|+|+..|++|.+.++|.+... ..
T Consensus 19 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 98 (252)
T TIGR03005 19 LNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNL 98 (252)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEEEecCccc
Confidence 344589999999999999999999999999999999999998864310 00
Q ss_pred ---cccccccch--------h---hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCc
Q 024413 112 ---LPFAANIDI--------R---DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQI 177 (268)
Q Consensus 112 ---~~~~~~~~~--------~---~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~ 177 (268)
.+..+++.. . ....+.++++.+++....... +..|||||+||++||+|++.+|+++|+|||...
T Consensus 99 ~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LS~G~~qrv~laral~~~p~llllDEP~~~ 176 (252)
T TIGR03005 99 FPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHM--PAQLSGGQQQRVAIARALAMRPKVMLFDEVTSA 176 (252)
T ss_pred CCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcC--hhhcCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 011111111 0 112456788888887543333 889999999999999999999999999999875
Q ss_pred chhhhhhHHHHHHHHHhc-cCCcEEEEEEcC
Q 024413 178 EIFTWSASGAIITEAFAS-TFPTVVTYVVDT 207 (268)
Q Consensus 178 ~~~~~~~~~~~i~~~~~~-~~~d~vv~vvD~ 207 (268)
-+.........+.+.+.. ....+|+..+|.
T Consensus 177 LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~ 207 (252)
T TIGR03005 177 LDPELVGEVLNVIRRLASEHDLTMLLVTHEM 207 (252)
T ss_pred CCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH
Confidence 432222222233333322 234555555554
No 149
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=1.9e-20 Score=166.78 Aligned_cols=144 Identities=11% Similarity=0.030 Sum_probs=100.0
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC------------CCcccc-----------cc
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV------------MTLPFA-----------AN 117 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~------------~~~~~~-----------~~ 117 (268)
.....+.+|++++|+|+||||||||+++|+|+.++++|.++++|.+... ..++.. ++
T Consensus 20 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~ 99 (275)
T PRK13639 20 GINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEED 99 (275)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhhccccHHHH
Confidence 3445589999999999999999999999999999999999998876420 011111 11
Q ss_pred cchh----------hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc-hhhhhhHH
Q 024413 118 IDIR----------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE-IFTWSASG 186 (268)
Q Consensus 118 ~~~~----------~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~-~~~~~~~~ 186 (268)
+... ...++.++++.++|....... +..|||||+||+++|++++.+|+++|+|||+..- +.......
T Consensus 100 i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~--~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~ 177 (275)
T PRK13639 100 VAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKP--PHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIM 177 (275)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCC--hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHH
Confidence 1100 113466788999997655444 8999999999999999999999999999998754 33323233
Q ss_pred HHHHHHHhccCCcEEEEEEcC
Q 024413 187 AIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 187 ~~i~~~~~~~~~d~vv~vvD~ 207 (268)
..+ ..+......+++..+|.
T Consensus 178 ~~l-~~l~~~~~til~vtH~~ 197 (275)
T PRK13639 178 KLL-YDLNKEGITIIISTHDV 197 (275)
T ss_pred HHH-HHHHHCCCEEEEEecCH
Confidence 333 33333333445544444
No 150
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.84 E-value=1.8e-20 Score=161.35 Aligned_cols=145 Identities=15% Similarity=0.100 Sum_probs=100.6
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC-------------C----C------cccccc
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV-------------M----T------LPFAAN 117 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~-------------~----~------~~~~~~ 117 (268)
.....+.+|++++|+|+||||||||+++|+|.+++++|.++++|.+... . + .+..++
T Consensus 23 ~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n 102 (220)
T TIGR02982 23 DINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQN 102 (220)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCCHHHH
Confidence 3344588999999999999999999999999999999999998875420 0 0 111111
Q ss_pred cch----h-------hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHH
Q 024413 118 IDI----R-------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASG 186 (268)
Q Consensus 118 ~~~----~-------~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~ 186 (268)
+.. . ....+.++++.+++....... +..||+||+||+++|++++.+|+++|+|||...-+.......
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l 180 (220)
T TIGR02982 103 VQMALELQPNLSYQEARERARAMLEAVGLGDHLDYY--PHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDV 180 (220)
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcC--hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHH
Confidence 110 0 122467788999997544444 899999999999999999999999999999875432222222
Q ss_pred HHHHHHHhc-cCCcEEEEEEcC
Q 024413 187 AIITEAFAS-TFPTVVTYVVDT 207 (268)
Q Consensus 187 ~~i~~~~~~-~~~d~vv~vvD~ 207 (268)
..+.+.+.. ....+++..+|.
T Consensus 181 ~~~l~~~~~~~~~tii~~sh~~ 202 (220)
T TIGR02982 181 VELMQKLAREQGCTILIVTHDN 202 (220)
T ss_pred HHHHHHHHHHcCCEEEEEeCCH
Confidence 333333333 234555555554
No 151
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.84 E-value=1.9e-20 Score=165.77 Aligned_cols=145 Identities=10% Similarity=0.014 Sum_probs=98.7
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC-------------CCcccc------cccch-
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV-------------MTLPFA------ANIDI- 120 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~-------------~~~~~~------~~~~~- 120 (268)
.....+++|++++|+|+||||||||+++|+|+++|++|.++++|.+... ..++.. ....+
T Consensus 29 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~ 108 (265)
T TIGR02769 29 NVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVR 108 (265)
T ss_pred CceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHH
Confidence 3445589999999999999999999999999999999999998865321 001110 00110
Q ss_pred ----------------hhHHHHHHHHHHcCCCC-CCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhh
Q 024413 121 ----------------RDTIRYKEVMKQFNLGP-NGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWS 183 (268)
Q Consensus 121 ----------------~~~~~~~~~l~~~~l~~-~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~ 183 (268)
....++.++++.+++.. .... .+..|||||+||++||+|++.+|+++|+|||...-+....
T Consensus 109 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~ 186 (265)
T TIGR02769 109 QIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADK--LPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQ 186 (265)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhC--ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 01234667888999853 2233 3889999999999999999999999999999875432222
Q ss_pred hHHHHHHHHHhcc-CCcEEEEEEcC
Q 024413 184 ASGAIITEAFAST-FPTVVTYVVDT 207 (268)
Q Consensus 184 ~~~~~i~~~~~~~-~~d~vv~vvD~ 207 (268)
.....+...+... ...+++..+|.
T Consensus 187 ~~l~~~l~~~~~~~g~tiiivsH~~ 211 (265)
T TIGR02769 187 AVILELLRKLQQAFGTAYLFITHDL 211 (265)
T ss_pred HHHHHHHHHHHHhcCcEEEEEeCCH
Confidence 2222333333332 34555555554
No 152
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=1.6e-20 Score=167.87 Aligned_cols=116 Identities=10% Similarity=0.022 Sum_probs=89.9
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC------------CCcccc-----------cc
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV------------MTLPFA-----------AN 117 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~------------~~~~~~-----------~~ 117 (268)
.....+++|++++|+|+||||||||+++|+|+.+|++|.++++|.+... ..++.. ++
T Consensus 24 ~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~ 103 (283)
T PRK13636 24 GININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQD 103 (283)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccHHHH
Confidence 3445589999999999999999999999999999999999999876420 001111 11
Q ss_pred cch-------h---hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc
Q 024413 118 IDI-------R---DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE 178 (268)
Q Consensus 118 ~~~-------~---~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~ 178 (268)
+.. . ....+.++++.++|....... +..|||||+||++||+|++.+|+++|+|||...-
T Consensus 104 l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~--~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gL 172 (283)
T PRK13636 104 VSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKP--THCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGL 172 (283)
T ss_pred HHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCC--cccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCC
Confidence 110 0 123467788999997655444 8999999999999999999999999999998754
No 153
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.84 E-value=1.6e-20 Score=174.09 Aligned_cols=141 Identities=18% Similarity=0.147 Sum_probs=109.7
Q ss_pred CcccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCC---------------------CCCccccccc
Q 024413 60 SSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA---------------------VMTLPFAANI 118 (268)
Q Consensus 60 ~~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~---------------------~~~~~~~~~~ 118 (268)
......+++|++.+|+|.||||||||+++|.|.++|++|.|+|+|+... ++.++..+|+
T Consensus 21 d~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENi 100 (501)
T COG3845 21 DDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENI 100 (501)
T ss_pred CceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccchhhhh
Confidence 3445569999999999999999999999999999999999999998643 2234444444
Q ss_pred ch-------------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhH
Q 024413 119 DI-------------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSAS 185 (268)
Q Consensus 119 ~~-------------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~ 185 (268)
-+ ..+.++.++.+.+||.-+.+.. +.+||-|+|||+.|.++|..+++++|||||+......+...
T Consensus 101 iLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~--V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~ 178 (501)
T COG3845 101 ILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAK--VADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADE 178 (501)
T ss_pred hhcCccccccccCHHHHHHHHHHHHHHhCCCCCccce--eecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 22 2345688899999998777766 89999999999999999999999999999998765444444
Q ss_pred HHHHHHHHhccCCcEEE
Q 024413 186 GAIITEAFASTFPTVVT 202 (268)
Q Consensus 186 ~~~i~~~~~~~~~d~vv 202 (268)
...+.+.+++....+|+
T Consensus 179 lf~~l~~l~~~G~tIi~ 195 (501)
T COG3845 179 LFEILRRLAAEGKTIIF 195 (501)
T ss_pred HHHHHHHHHHCCCEEEE
Confidence 45555555554333333
No 154
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.84 E-value=2.2e-20 Score=164.22 Aligned_cols=144 Identities=10% Similarity=-0.003 Sum_probs=97.4
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCC---CCCccc--------ccccch---hhHHHHH
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA---VMTLPF--------AANIDI---RDTIRYK 127 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~---~~~~~~--------~~~~~~---~~~~~~~ 127 (268)
....+.+|++++|+|+||||||||+++|+|+.+|++|.+.+.+.... ...... ..++.. .....+.
T Consensus 23 vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 102 (251)
T PRK09544 23 VSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDIL 102 (251)
T ss_pred EEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhccccccHHHHH
Confidence 34458999999999999999999999999999999999988753210 111001 111100 1123466
Q ss_pred HHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhcc-CCcEEEEEEc
Q 024413 128 EVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAST-FPTVVTYVVD 206 (268)
Q Consensus 128 ~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~-~~d~vv~vvD 206 (268)
++++.+++....... +..||+||+||++||+|++.+|+++|+|||+..-+.........+...+... ...+|+..+|
T Consensus 103 ~~l~~~gl~~~~~~~--~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~ 180 (251)
T PRK09544 103 PALKRVQAGHLIDAP--MQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHD 180 (251)
T ss_pred HHHHHcCChHHHhCC--hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 788889887544433 8999999999999999999999999999998754322222222333333332 3455555555
Q ss_pred C
Q 024413 207 T 207 (268)
Q Consensus 207 ~ 207 (268)
.
T Consensus 181 ~ 181 (251)
T PRK09544 181 L 181 (251)
T ss_pred H
Confidence 4
No 155
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=2.3e-20 Score=179.37 Aligned_cols=116 Identities=16% Similarity=0.143 Sum_probs=88.8
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccC--cccEEEEecccCCC-----------C----------Ccccccc
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQS--RNIRGYVMNLDPAV-----------M----------TLPFAAN 117 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~--~~g~i~i~~~~~~~-----------~----------~~~~~~~ 117 (268)
.....+.+|++++|+||||||||||+++|+|+.+| ++|.|+++|.+... . ..+..++
T Consensus 23 ~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~ 102 (506)
T PRK13549 23 NVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLEN 102 (506)
T ss_pred ceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCCcHHHH
Confidence 44455899999999999999999999999999986 79999998864311 0 0111111
Q ss_pred cch-------------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc
Q 024413 118 IDI-------------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE 178 (268)
Q Consensus 118 ~~~-------------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~ 178 (268)
+.. ....++.++++.+++....... +.+||||||||++||+|++.+|+++|+|||+..-
T Consensus 103 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~L 174 (506)
T PRK13549 103 IFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATP--VGNLGLGQQQLVEIAKALNKQARLLILDEPTASL 174 (506)
T ss_pred hhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccc--hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Confidence 110 0123567789999997554444 8999999999999999999999999999998753
No 156
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.84 E-value=6.5e-21 Score=151.74 Aligned_cols=111 Identities=19% Similarity=0.226 Sum_probs=86.8
Q ss_pred cccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCC----------cccc----cccchh---hHHHHH
Q 024413 65 FKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT----------LPFA----ANIDIR---DTIRYK 127 (268)
Q Consensus 65 ~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~----------~~~~----~~~~~~---~~~~~~ 127 (268)
.+.+|++++|+|+||||||||+++|+|..++++|.+++++.+..... ++.. ..+++. ...++.
T Consensus 7 ~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~~~~~~~ 86 (137)
T PF00005_consen 7 EIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENESDERIE 86 (137)
T ss_dssp EEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHHHHHHHH
T ss_pred EEcCCCEEEEEccCCCccccceeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 47899999999999999999999999999999999999987654310 1111 111122 234677
Q ss_pred HHHHHcCCCCCCCcc--cchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCC
Q 024413 128 EVMKQFNLGPNGGIL--TSLNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (268)
Q Consensus 128 ~~l~~~~l~~~~~~~--~~~~~lS~G~~qr~~ia~al~~~~~illlDePG 175 (268)
++++.+++....... ..+..||+||+||++||+|++.+|+++|+|||+
T Consensus 87 ~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt 136 (137)
T PF00005_consen 87 EVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPT 136 (137)
T ss_dssp HHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTT
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 888998887633333 234999999999999999999999999999997
No 157
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=2.3e-20 Score=169.55 Aligned_cols=145 Identities=13% Similarity=-0.026 Sum_probs=97.9
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC--------------------------Cccc
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM--------------------------TLPF 114 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~--------------------------~~~~ 114 (268)
.....+++|++++|+|+||||||||+++|+|++.|++|.|+++|.+.... .+..
T Consensus 44 ~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q 123 (320)
T PRK13631 44 NISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQ 123 (320)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhcEEEEEE
Confidence 34445899999999999999999999999999999999999987543110 0011
Q ss_pred c-----------cccch----------hhHHHHHHHHHHcCCC-CCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEe
Q 024413 115 A-----------ANIDI----------RDTIRYKEVMKQFNLG-PNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVD 172 (268)
Q Consensus 115 ~-----------~~~~~----------~~~~~~~~~l~~~~l~-~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlD 172 (268)
. +++.. ....++.++++.++|. ..... .+..|||||+||++||+|++.+|+++|+|
T Consensus 124 ~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~--~~~~LSgGqkqRvaiAraL~~~p~iLLLD 201 (320)
T PRK13631 124 FPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLER--SPFGLSGGQKRRVAIAGILAIQPEILIFD 201 (320)
T ss_pred CchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcC--CcccCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 1 11100 0123466788899986 33333 38899999999999999999999999999
Q ss_pred CCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcC
Q 024413 173 TPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 173 ePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
||+..-+.........+...++.....+++..+|.
T Consensus 202 EPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~ 236 (320)
T PRK13631 202 EPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTM 236 (320)
T ss_pred CCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH
Confidence 99875432222222233333333333444444554
No 158
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=2.7e-20 Score=161.63 Aligned_cols=144 Identities=13% Similarity=0.057 Sum_probs=100.5
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC--------C----------Ccccccccchh--
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV--------M----------TLPFAANIDIR-- 121 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~--------~----------~~~~~~~~~~~-- 121 (268)
....+.+|++++|+|+||+|||||+++|+|.++|+.|.++++|.+... . ..+..+++...
T Consensus 19 i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~ 98 (232)
T cd03300 19 VSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLR 98 (232)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHHHHHHHHH
Confidence 344588999999999999999999999999999999999998864321 0 01111111100
Q ss_pred --------hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHH
Q 024413 122 --------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAF 193 (268)
Q Consensus 122 --------~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~ 193 (268)
....+.++++.+++....... +..||+||+||+++|++++.+|+++|+|||....+.........+...+
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~ 176 (232)
T cd03300 99 LKKLPKAEIKERVAEALDLVQLEGYANRK--PSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRL 176 (232)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCchhhcCC--hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 122456788889997655544 8999999999999999999999999999998754423223333333334
Q ss_pred hcc-CCcEEEEEEcC
Q 024413 194 AST-FPTVVTYVVDT 207 (268)
Q Consensus 194 ~~~-~~d~vv~vvD~ 207 (268)
+.. ...+++..+|-
T Consensus 177 ~~~~~~tiii~sh~~ 191 (232)
T cd03300 177 QKELGITFVFVTHDQ 191 (232)
T ss_pred HHHcCCEEEEEeCCH
Confidence 332 34555555554
No 159
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.84 E-value=2.7e-20 Score=161.45 Aligned_cols=117 Identities=10% Similarity=0.014 Sum_probs=86.2
Q ss_pred cccccCCeEEEEEecCCCCHHHHHHHHHhcccC----cccEEEEecccCCC--------CCcc------cccccch----
Q 024413 63 INFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQS----RNIRGYVMNLDPAV--------MTLP------FAANIDI---- 120 (268)
Q Consensus 63 ~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~----~~g~i~i~~~~~~~--------~~~~------~~~~~~~---- 120 (268)
...+++|++++|+|+||||||||+++|+|+.+| ++|.++++|.+... ..++ +...+..
T Consensus 6 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~~~~ 85 (230)
T TIGR02770 6 NLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNHA 85 (230)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHHHHH
Confidence 345889999999999999999999999999998 89999998865311 0000 1111110
Q ss_pred ------------hhHHHHHHHHHHcCCCCC-CCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 121 ------------RDTIRYKEVMKQFNLGPN-GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 121 ------------~~~~~~~~~l~~~~l~~~-~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
....++.++++.+++... ......+..|||||+||++||++++.+|+++|+|||+..-+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD 157 (230)
T TIGR02770 86 IETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLD 157 (230)
T ss_pred HHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccC
Confidence 012236678888888631 11223388999999999999999999999999999987543
No 160
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.84 E-value=1.9e-20 Score=164.82 Aligned_cols=144 Identities=15% Similarity=0.085 Sum_probs=98.3
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC--------------CC------cccccccch-
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV--------------MT------LPFAANIDI- 120 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~--------------~~------~~~~~~~~~- 120 (268)
....+++|++++|+|+||||||||+++|+|.+++++|.++++|.+... +. .+..+++..
T Consensus 20 is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~ 99 (256)
T TIGR03873 20 VDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALG 99 (256)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHHHHHHhc
Confidence 344588999999999999999999999999999999999998865310 00 011111111
Q ss_pred -------------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHH
Q 024413 121 -------------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGA 187 (268)
Q Consensus 121 -------------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~ 187 (268)
....++.++++.+++....... +..||+||+||+++|+|++.+|+++|+|||+..-+........
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~ 177 (256)
T TIGR03873 100 RIPHRSLWAGDSPHDAAVVDRALARTELSHLADRD--MSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETL 177 (256)
T ss_pred chhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCC--cccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHH
Confidence 0112456678888886544433 8899999999999999999999999999998754322222233
Q ss_pred HHHHHHhccCCcEEEEEEcC
Q 024413 188 IITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 188 ~i~~~~~~~~~d~vv~vvD~ 207 (268)
.+.+.++.....+|+..+|.
T Consensus 178 ~~l~~~~~~~~tiii~sH~~ 197 (256)
T TIGR03873 178 ALVRELAATGVTVVAALHDL 197 (256)
T ss_pred HHHHHHHhcCCEEEEEeCCH
Confidence 33333333333455544554
No 161
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=2.1e-20 Score=167.48 Aligned_cols=117 Identities=16% Similarity=0.044 Sum_probs=86.6
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC---------------CCcccc----------
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV---------------MTLPFA---------- 115 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~---------------~~~~~~---------- 115 (268)
.....+++|++++|+|+||||||||+++|+|+.+|++|.++++|.+... ..++..
T Consensus 29 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv 108 (289)
T PRK13645 29 NTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETI 108 (289)
T ss_pred eeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhhhhHH
Confidence 3344589999999999999999999999999999999999998865310 001111
Q ss_pred -cccchh-------h---HHHHHHHHHHcCCC-CCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 116 -ANIDIR-------D---TIRYKEVMKQFNLG-PNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 116 -~~~~~~-------~---~~~~~~~l~~~~l~-~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
+++... . ...+.++++.++|. .... ..+..|||||+||++||+|++.+|+++|+|||+..-+
T Consensus 109 ~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~--~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD 182 (289)
T PRK13645 109 EKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVK--RSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLD 182 (289)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhc--CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCC
Confidence 011100 0 12355678888884 3333 3388999999999999999999999999999987543
No 162
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=1.3e-20 Score=163.96 Aligned_cols=145 Identities=14% Similarity=0.067 Sum_probs=95.4
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC-----------Cc----------ccccccc
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM-----------TL----------PFAANID 119 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~-----------~~----------~~~~~~~ 119 (268)
.....+++|++++|+|+||||||||+++|+|..+|++|.+.++|.+.... .+ +..+++.
T Consensus 23 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~ 102 (237)
T PRK11614 23 EVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLA 102 (237)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHHHHHH
Confidence 33455899999999999999999999999999999999999988653210 00 1111111
Q ss_pred h----h----hHHHHHHHHHHc-CCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHH
Q 024413 120 I----R----DTIRYKEVMKQF-NLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIIT 190 (268)
Q Consensus 120 ~----~----~~~~~~~~l~~~-~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~ 190 (268)
. . ....+.++++.+ ++..... ..+..|||||+||++||++++.+|+++|+|||+..-+.........+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~--~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l 180 (237)
T PRK11614 103 MGGFFAERDQFQERIKWVYELFPRLHERRI--QRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTI 180 (237)
T ss_pred HhhhccChhHHHHHHHHHHHHHHHHHHHHh--CchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHH
Confidence 1 0 011234455666 3543222 238899999999999999999999999999998754322222222333
Q ss_pred HHHhccCCcEEEEEEcC
Q 024413 191 EAFASTFPTVVTYVVDT 207 (268)
Q Consensus 191 ~~~~~~~~d~vv~vvD~ 207 (268)
..++.....+|+..+|.
T Consensus 181 ~~~~~~~~tiii~sH~~ 197 (237)
T PRK11614 181 EQLREQGMTIFLVEQNA 197 (237)
T ss_pred HHHHHCCCEEEEEeCcH
Confidence 33433334555555554
No 163
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=1.9e-20 Score=170.55 Aligned_cols=119 Identities=10% Similarity=0.036 Sum_probs=89.4
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhccc----CcccEEEEecccCCC--------------CCccc------cc
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQ----SRNIRGYVMNLDPAV--------------MTLPF------AA 116 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~----~~~g~i~i~~~~~~~--------------~~~~~------~~ 116 (268)
...+.+.+|++++|+|+||||||||+++|+|++. +++|.|+++|.+... ..+++ .+
T Consensus 25 ~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p 104 (326)
T PRK11022 25 RISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNP 104 (326)
T ss_pred eeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCC
Confidence 4455689999999999999999999999999987 378999999876421 00111 11
Q ss_pred ccch-----------------hhHHHHHHHHHHcCCCCC-CCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc
Q 024413 117 NIDI-----------------RDTIRYKEVMKQFNLGPN-GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE 178 (268)
Q Consensus 117 ~~~~-----------------~~~~~~~~~l~~~~l~~~-~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~ 178 (268)
.+.+ ....++.++++.++|... .....++.+|||||+||++||+|++.+|+++|+|||+...
T Consensus 105 ~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~L 184 (326)
T PRK11022 105 CYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTAL 184 (326)
T ss_pred cCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Confidence 1111 012346778999999742 1233458999999999999999999999999999998754
Q ss_pred h
Q 024413 179 I 179 (268)
Q Consensus 179 ~ 179 (268)
+
T Consensus 185 D 185 (326)
T PRK11022 185 D 185 (326)
T ss_pred C
Confidence 3
No 164
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.84 E-value=1.5e-20 Score=154.87 Aligned_cols=124 Identities=12% Similarity=0.067 Sum_probs=84.9
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCc
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGI 141 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 141 (268)
....+++|++++|+|+||||||||+++|+|+.+|++|.+++++.+..... ..+.. . ..
T Consensus 19 i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~--------~~~~~------~--------~~ 76 (163)
T cd03216 19 VSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFAS--------PRDAR------R--------AG 76 (163)
T ss_pred eEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCC--------HHHHH------h--------cC
Confidence 34458999999999999999999999999999999999999886542110 00000 0 00
Q ss_pred ccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcC
Q 024413 142 LTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 142 ~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
..++.+||+||+||+++|+|++.+|+++|+|||...-+.........+.+.++.....+++..+|.
T Consensus 77 i~~~~qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~ 142 (163)
T cd03216 77 IAMVYQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRL 142 (163)
T ss_pred eEEEEecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 111344999999999999999999999999999875432222223333333333334455544544
No 165
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.84 E-value=1.9e-20 Score=166.01 Aligned_cols=145 Identities=10% Similarity=0.035 Sum_probs=97.6
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC----------Cccccc------------cc
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM----------TLPFAA------------NI 118 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~----------~~~~~~------------~~ 118 (268)
.....+++|++++|+||||||||||+++|+|+++|++|.|+++|.+.... .++... ++
T Consensus 31 ~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l 110 (267)
T PRK15112 31 PLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQIL 110 (267)
T ss_pred eeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhHHHHH
Confidence 34455899999999999999999999999999999999999988653210 001110 11
Q ss_pred ch----h-------hHHHHHHHHHHcCCCC-CCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHH
Q 024413 119 DI----R-------DTIRYKEVMKQFNLGP-NGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASG 186 (268)
Q Consensus 119 ~~----~-------~~~~~~~~l~~~~l~~-~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~ 186 (268)
.. . ....+.++++.+++.+ .... .+..||+||+||++||++++.+|+++|+|||...-+.......
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l 188 (267)
T PRK15112 111 DFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASY--YPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQL 188 (267)
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhc--CchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHH
Confidence 00 0 0124567888999853 2222 3789999999999999999999999999999875432222222
Q ss_pred HHHHHHHhcc-CCcEEEEEEcC
Q 024413 187 AIITEAFAST-FPTVVTYVVDT 207 (268)
Q Consensus 187 ~~i~~~~~~~-~~d~vv~vvD~ 207 (268)
..+...+... ...+|+..+|.
T Consensus 189 ~~~l~~~~~~~g~tviivsH~~ 210 (267)
T PRK15112 189 INLMLELQEKQGISYIYVTQHL 210 (267)
T ss_pred HHHHHHHHHHcCcEEEEEeCCH
Confidence 2333333332 33455544554
No 166
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=1.8e-20 Score=170.78 Aligned_cols=118 Identities=16% Similarity=0.104 Sum_probs=90.1
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC-------------Ccccc------cccch-
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM-------------TLPFA------ANIDI- 120 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~-------------~~~~~------~~~~~- 120 (268)
.....+.+|++++|+|+||||||||+++|+|+.++++|.++++|.+.... .+++. +.+.+
T Consensus 33 ~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~ 112 (327)
T PRK11308 33 GVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVG 112 (327)
T ss_pred eeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHH
Confidence 44555899999999999999999999999999999999999998764210 00100 00110
Q ss_pred -------------h---hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 121 -------------R---DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 121 -------------~---~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
. ...++.++++.++|.+. ....++++|||||+||++||+|++.+|+++|+|||+...+
T Consensus 113 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD 186 (327)
T PRK11308 113 QILEEPLLINTSLSAAERREKALAMMAKVGLRPE-HYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALD 186 (327)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChH-HhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCC
Confidence 0 12356788999999642 2233489999999999999999999999999999987654
No 167
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.84 E-value=2e-20 Score=161.96 Aligned_cols=145 Identities=12% Similarity=0.046 Sum_probs=95.5
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC-----------CCcccc----cccchh----
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV-----------MTLPFA----ANIDIR---- 121 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~-----------~~~~~~----~~~~~~---- 121 (268)
.....+++|++++|+|+||||||||+++|+|..+|++|.+++++.+... ..++.. ..+++.
T Consensus 18 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~ 97 (230)
T TIGR03410 18 GVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLL 97 (230)
T ss_pred ceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHHHHHH
Confidence 3445588999999999999999999999999999999999998865321 011111 011110
Q ss_pred ---------hHHHHHHHHHHcC-CCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHH
Q 024413 122 ---------DTIRYKEVMKQFN-LGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITE 191 (268)
Q Consensus 122 ---------~~~~~~~~l~~~~-l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~ 191 (268)
......++++.++ +..... ..+..|||||+||++||++++.+|+++|+|||...-+.........+..
T Consensus 98 ~~~~~~~~~~~~~~~~~l~~~~~l~~~~~--~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~ 175 (230)
T TIGR03410 98 TGLAALPRRSRKIPDEIYELFPVLKEMLG--RRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIR 175 (230)
T ss_pred HHHHhcCcchHHHHHHHHHHHHhHHHHhh--CChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHH
Confidence 0112355666665 333223 3388999999999999999999999999999987543222223333333
Q ss_pred HHhcc-CCcEEEEEEcC
Q 024413 192 AFAST-FPTVVTYVVDT 207 (268)
Q Consensus 192 ~~~~~-~~d~vv~vvD~ 207 (268)
.++.. ...+++..+|.
T Consensus 176 ~~~~~~~~tii~~sH~~ 192 (230)
T TIGR03410 176 RLRAEGGMAILLVEQYL 192 (230)
T ss_pred HHHHcCCcEEEEEeCCH
Confidence 33332 34555555554
No 168
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.84 E-value=3.5e-20 Score=161.61 Aligned_cols=144 Identities=11% Similarity=-0.047 Sum_probs=96.1
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcc--cCcccEEEEecccCCC-----------CCccccc----ccchh---
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHT--QSRNIRGYVMNLDPAV-----------MTLPFAA----NIDIR--- 121 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~--~~~~g~i~i~~~~~~~-----------~~~~~~~----~~~~~--- 121 (268)
....+++|++++|+|+||||||||+++|+|+. +|++|.|+++|.+... ..++... ..+..
T Consensus 19 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~ 98 (243)
T TIGR01978 19 VNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFL 98 (243)
T ss_pred cceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCcCHHHHH
Confidence 34458999999999999999999999999994 7899999998865321 0011110 00000
Q ss_pred ----------------h----HHHHHHHHHHcCCCC-CCCcccchh-hhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 122 ----------------D----TIRYKEVMKQFNLGP-NGGILTSLN-LFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 122 ----------------~----~~~~~~~l~~~~l~~-~~~~~~~~~-~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
. ..++.++++.+++.. ..... +. .|||||+||++||++++.+|+++|+|||+..-+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD 176 (243)
T TIGR01978 99 RSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRS--VNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLD 176 (243)
T ss_pred HHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccc--cccCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCC
Confidence 0 123566788888863 22322 55 599999999999999999999999999987543
Q ss_pred hhhhhHHHHHHHHHhccCCcEEEEEEcC
Q 024413 180 FTWSASGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 180 ~~~~~~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
.........+...++.....+++..+|.
T Consensus 177 ~~~~~~l~~~l~~~~~~~~tvi~vsH~~ 204 (243)
T TIGR01978 177 IDALKIVAEGINRLREPDRSFLIITHYQ 204 (243)
T ss_pred HHHHHHHHHHHHHHHHCCcEEEEEEecH
Confidence 2222223333333433334555555655
No 169
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.84 E-value=4.5e-20 Score=149.78 Aligned_cols=143 Identities=13% Similarity=0.092 Sum_probs=107.5
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCC-------------------cccccccch-
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT-------------------LPFAANIDI- 120 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~-------------------~~~~~~~~~- 120 (268)
...+.+++|+.++|+||+|||||||+++++.+..|+.|.+++.|++..... -+...|+.+
T Consensus 21 ~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVeDNlifP 100 (223)
T COG4619 21 NISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFP 100 (223)
T ss_pred ceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchhhccccc
Confidence 344558999999999999999999999999999999999999998864211 111122211
Q ss_pred -------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCc-chhhhhhHHHHHHHH
Q 024413 121 -------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQI-EIFTWSASGAIITEA 192 (268)
Q Consensus 121 -------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~-~~~~~~~~~~~i~~~ 192 (268)
.++..+..++..++++..--.+ .+.+||||++||++++|.|...|+++|||||+.. +..+......++.++
T Consensus 101 ~~~r~rr~dr~aa~~llar~~l~~~~L~k-~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~ 179 (223)
T COG4619 101 WQIRNRRPDRAAALDLLARFALPDSILTK-NITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRY 179 (223)
T ss_pred hHHhccCCChHHHHHHHHHcCCchhhhcc-hhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHH
Confidence 2566778899999998653333 3889999999999999999999999999999875 444455566666676
Q ss_pred HhccCCcEEEEEE
Q 024413 193 FASTFPTVVTYVV 205 (268)
Q Consensus 193 ~~~~~~d~vv~vv 205 (268)
++.. ...++++.
T Consensus 180 v~~q-~vAv~WiT 191 (223)
T COG4619 180 VREQ-NVAVLWIT 191 (223)
T ss_pred hhhh-ceEEEEEe
Confidence 6543 34444443
No 170
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=2.5e-20 Score=165.36 Aligned_cols=145 Identities=13% Similarity=0.033 Sum_probs=99.1
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC----------CCcccc-----------cccc
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV----------MTLPFA-----------ANID 119 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~----------~~~~~~-----------~~~~ 119 (268)
.....+++|++++|+||||||||||+++|+|+.+|++|.|+++|.+... ..++.. .++.
T Consensus 27 ~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~ 106 (269)
T PRK13648 27 DVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVA 106 (269)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHHHHH
Confidence 3344589999999999999999999999999999999999999875421 001111 0110
Q ss_pred h-------h---hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHH
Q 024413 120 I-------R---DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAII 189 (268)
Q Consensus 120 ~-------~---~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i 189 (268)
. . ....+.++++.+++.+..... +..||+||+||++||+|++.+|+++|+|||...-+.........+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~ 184 (269)
T PRK13648 107 FGLENHAVPYDEMHRRVSEALKQVDMLERADYE--PNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDL 184 (269)
T ss_pred hhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCC--cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 0 0 112456788899987654444 889999999999999999999999999999875432222222223
Q ss_pred HHHHhcc-CCcEEEEEEcC
Q 024413 190 TEAFAST-FPTVVTYVVDT 207 (268)
Q Consensus 190 ~~~~~~~-~~d~vv~vvD~ 207 (268)
...+... ...+++..+|.
T Consensus 185 L~~~~~~~~~tiiivtH~~ 203 (269)
T PRK13648 185 VRKVKSEHNITIISITHDL 203 (269)
T ss_pred HHHHHHhcCCEEEEEecCc
Confidence 3333322 33445544554
No 171
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=2.5e-20 Score=166.30 Aligned_cols=144 Identities=13% Similarity=0.075 Sum_probs=99.8
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC-----------Ccccc-----------ccc
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM-----------TLPFA-----------ANI 118 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~-----------~~~~~-----------~~~ 118 (268)
.....+.+|++++|+|+||||||||+++|+|+++|++|.|+++|.+.... .++.. +++
T Consensus 28 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l 107 (280)
T PRK13633 28 DVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDV 107 (280)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhccccHHHHH
Confidence 34445899999999999999999999999999999999999998654210 01110 011
Q ss_pred ch-------h---hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch-hhhhhHHH
Q 024413 119 DI-------R---DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI-FTWSASGA 187 (268)
Q Consensus 119 ~~-------~---~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~-~~~~~~~~ 187 (268)
.. . ....+.++++.++|....... +.+|||||+||++||++++.+|+++|+|||....+ .......
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~--~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~- 184 (280)
T PRK13633 108 AFGPENLGIPPEEIRERVDESLKKVGMYEYRRHA--PHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVV- 184 (280)
T ss_pred HhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCC--cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH-
Confidence 00 0 123466788899997655444 89999999999999999999999999999987543 3333333
Q ss_pred HHHHHHhc-cCCcEEEEEEcC
Q 024413 188 IITEAFAS-TFPTVVTYVVDT 207 (268)
Q Consensus 188 ~i~~~~~~-~~~d~vv~vvD~ 207 (268)
.+...+.. ....+++..+|.
T Consensus 185 ~~l~~l~~~~g~tillvtH~~ 205 (280)
T PRK13633 185 NTIKELNKKYGITIILITHYM 205 (280)
T ss_pred HHHHHHHHhcCCEEEEEecCh
Confidence 33333322 233444444444
No 172
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.84 E-value=1.7e-20 Score=161.37 Aligned_cols=146 Identities=12% Similarity=0.042 Sum_probs=96.1
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC----------CCc---------ccccccch-
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV----------MTL---------PFAANIDI- 120 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~----------~~~---------~~~~~~~~- 120 (268)
.....+++|++++|+||||||||||+++|+|..+|++|.+++.+.+... ..+ +..+++..
T Consensus 22 ~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~ 101 (220)
T cd03245 22 NVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLG 101 (220)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCccccchHHHHhhcC
Confidence 3445589999999999999999999999999999999999998864310 000 11111111
Q ss_pred ---hhHHHHHHHHHHcCCCCCCCcc---------cchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHH
Q 024413 121 ---RDTIRYKEVMKQFNLGPNGGIL---------TSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAI 188 (268)
Q Consensus 121 ---~~~~~~~~~l~~~~l~~~~~~~---------~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~ 188 (268)
.....+.++++.+++....... ..+..|||||+||++||++++.+|+++|+|||+..-+.........
T Consensus 102 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~ 181 (220)
T cd03245 102 APLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKE 181 (220)
T ss_pred CCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHH
Confidence 1223455667777775322211 1246899999999999999999999999999987543222223333
Q ss_pred HHHHHhccCCcEEEEEEcC
Q 024413 189 ITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 189 i~~~~~~~~~d~vv~vvD~ 207 (268)
+...++.. ..+++..+|.
T Consensus 182 ~l~~~~~~-~tii~~sH~~ 199 (220)
T cd03245 182 RLRQLLGD-KTLIIITHRP 199 (220)
T ss_pred HHHHhcCC-CEEEEEeCCH
Confidence 33333332 4445544554
No 173
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.84 E-value=3.1e-20 Score=178.29 Aligned_cols=146 Identities=12% Similarity=0.145 Sum_probs=101.8
Q ss_pred CcccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCC-----------CCCcccc-------------
Q 024413 60 SSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-----------VMTLPFA------------- 115 (268)
Q Consensus 60 ~~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~-----------~~~~~~~------------- 115 (268)
......+.+|++++|+|+||||||||+++|+|+.+|++|.|+++|.+.. ...++..
T Consensus 269 ~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~ 348 (501)
T PRK10762 269 NDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVK 348 (501)
T ss_pred ccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHH
Confidence 3445568999999999999999999999999999999999999885431 1111111
Q ss_pred cccch----------------hhHHHHHHHHHHcCCC-CCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc
Q 024413 116 ANIDI----------------RDTIRYKEVMKQFNLG-PNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE 178 (268)
Q Consensus 116 ~~~~~----------------~~~~~~~~~l~~~~l~-~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~ 178 (268)
+++.. ....++.++++.+++. ..... .+..||||||||++||++++.+|+++|+|||+..-
T Consensus 349 e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~L 426 (501)
T PRK10762 349 ENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQ--AIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGV 426 (501)
T ss_pred HHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccC--chhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCC
Confidence 11110 0122466788999995 34433 38999999999999999999999999999998754
Q ss_pred hhhhhhHHHHHHHHHhccCCcEEEEEEcC
Q 024413 179 IFTWSASGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 179 ~~~~~~~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
+.........+.+.++.....+|+..+|.
T Consensus 427 D~~~~~~l~~~l~~~~~~g~tviivtHd~ 455 (501)
T PRK10762 427 DVGAKKEIYQLINQFKAEGLSIILVSSEM 455 (501)
T ss_pred CHhHHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 42323333334444443444566666665
No 174
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.83 E-value=3.5e-20 Score=177.97 Aligned_cols=144 Identities=10% Similarity=0.073 Sum_probs=99.6
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC-----------CC----------cccccccc
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV-----------MT----------LPFAANID 119 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~-----------~~----------~~~~~~~~ 119 (268)
.....+++|++++|+|+||||||||+++|+|+++|++|.|++.+.+... .. .+..+++.
T Consensus 22 ~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~ 101 (501)
T PRK11288 22 DISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLY 101 (501)
T ss_pred eeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHHHHHH
Confidence 3444589999999999999999999999999999999999998865321 00 11111111
Q ss_pred h-------------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc-hhhhhhH
Q 024413 120 I-------------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE-IFTWSAS 185 (268)
Q Consensus 120 ~-------------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~-~~~~~~~ 185 (268)
. ....++.++++.+++...... .+..|||||+||++||++++.+|+++|+|||+..- +......
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l 179 (501)
T PRK11288 102 LGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDT--PLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQL 179 (501)
T ss_pred hcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCC--chhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHH
Confidence 0 012356778999999754443 38999999999999999999999999999998754 3332223
Q ss_pred HHHHHHHHhccCCcEEEEEEcC
Q 024413 186 GAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 186 ~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
.. +...++.....+|+..+|.
T Consensus 180 ~~-~l~~~~~~g~tiiiitHd~ 200 (501)
T PRK11288 180 FR-VIRELRAEGRVILYVSHRM 200 (501)
T ss_pred HH-HHHHHHhCCCEEEEEeCCH
Confidence 33 3333333333455555554
No 175
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.83 E-value=4.6e-20 Score=162.31 Aligned_cols=147 Identities=10% Similarity=-0.006 Sum_probs=98.4
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccC----cccEEEEecccCCC--------CCccc------ccccch--
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQS----RNIRGYVMNLDPAV--------MTLPF------AANIDI-- 120 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~----~~g~i~i~~~~~~~--------~~~~~------~~~~~~-- 120 (268)
.....+.+|++++|+|+||||||||+++|+|+.+| ++|.++++|.+... ..++. ....++
T Consensus 21 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~ 100 (254)
T PRK10418 21 GVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHTMHT 100 (254)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccccHHH
Confidence 33445899999999999999999999999999998 99999998865310 00011 100110
Q ss_pred ------------hhHHHHHHHHHHcCCCCCC-CcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch-hhhhhHH
Q 024413 121 ------------RDTIRYKEVMKQFNLGPNG-GILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI-FTWSASG 186 (268)
Q Consensus 121 ------------~~~~~~~~~l~~~~l~~~~-~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~-~~~~~~~ 186 (268)
.....+.++++.+++.... .....+..|||||+||++||+|++.+|+++|+|||+..-+ .+.....
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~ 180 (254)
T PRK10418 101 HARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARIL 180 (254)
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHH
Confidence 1123466788899987532 1233478999999999999999999999999999987543 2222233
Q ss_pred HHHHHHHhccCCcEEEEEEcC
Q 024413 187 AIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 187 ~~i~~~~~~~~~d~vv~vvD~ 207 (268)
..+.+..+.....+++..+|.
T Consensus 181 ~~L~~~~~~~g~til~~sH~~ 201 (254)
T PRK10418 181 DLLESIVQKRALGMLLVTHDM 201 (254)
T ss_pred HHHHHHHHhcCcEEEEEecCH
Confidence 333332222234455544544
No 176
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.83 E-value=3.8e-20 Score=177.24 Aligned_cols=144 Identities=12% Similarity=0.031 Sum_probs=99.2
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC-----------CC----------cccccccc
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV-----------MT----------LPFAANID 119 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~-----------~~----------~~~~~~~~ 119 (268)
.....+++|++++|+|+||||||||+++|+|+.+|++|.++++|.+... .. .+..+++.
T Consensus 16 ~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~ 95 (491)
T PRK10982 16 NVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMW 95 (491)
T ss_pred eeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHHHHhh
Confidence 3445589999999999999999999999999999999999998865321 00 11111111
Q ss_pred h----------h---hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc-hhhhhhH
Q 024413 120 I----------R---DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE-IFTWSAS 185 (268)
Q Consensus 120 ~----------~---~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~-~~~~~~~ 185 (268)
. . ...++.++++.+++....... +.+|||||+||++||+|++.+|+++|+|||+..- +......
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l 173 (491)
T PRK10982 96 LGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAK--VATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHL 173 (491)
T ss_pred cccccccccccCHHHHHHHHHHHHHHcCCCCCccCc--hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHH
Confidence 0 0 122466788889987544433 8999999999999999999999999999998754 3332223
Q ss_pred HHHHHHHHhccCCcEEEEEEcC
Q 024413 186 GAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 186 ~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
. .+...++.....+|+..+|.
T Consensus 174 ~-~~l~~l~~~g~tvii~tH~~ 194 (491)
T PRK10982 174 F-TIIRKLKERGCGIVYISHKM 194 (491)
T ss_pred H-HHHHHHHhCCCEEEEEecCH
Confidence 2 33333333333444444543
No 177
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.83 E-value=4.5e-20 Score=162.08 Aligned_cols=144 Identities=13% Similarity=0.058 Sum_probs=96.7
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEeccc-----CC--------------CCCccccc------
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLD-----PA--------------VMTLPFAA------ 116 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~-----~~--------------~~~~~~~~------ 116 (268)
....+++|++++|+|+||||||||+++|+|..+|++|.|++++.+ .. ...++...
T Consensus 22 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 101 (253)
T TIGR02323 22 VSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRM 101 (253)
T ss_pred ceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCcccccCc
Confidence 344589999999999999999999999999999999999998754 21 00001110
Q ss_pred ------ccc-----h------hhHHHHHHHHHHcCCCC-CCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc
Q 024413 117 ------NID-----I------RDTIRYKEVMKQFNLGP-NGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE 178 (268)
Q Consensus 117 ------~~~-----~------~~~~~~~~~l~~~~l~~-~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~ 178 (268)
++. . .....+.++++.+++.. ... ..+..|||||+||++||+|++.+|+++|+|||...-
T Consensus 102 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~--~~~~~LSgG~~qrv~laral~~~p~vlllDEP~~~L 179 (253)
T TIGR02323 102 RVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRID--DLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGL 179 (253)
T ss_pred cccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhh--cCchhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccC
Confidence 110 0 01234566788888863 223 338899999999999999999999999999998754
Q ss_pred -hhhhhhHHHHHHHHHhccCCcEEEEEEcC
Q 024413 179 -IFTWSASGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 179 -~~~~~~~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
+.+.......+.+..+.....+|+..+|.
T Consensus 180 D~~~~~~l~~~l~~~~~~~~~tii~vsH~~ 209 (253)
T TIGR02323 180 DVSVQARLLDLLRGLVRDLGLAVIIVTHDL 209 (253)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 33323233333332222234455544544
No 178
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.83 E-value=2.6e-20 Score=176.84 Aligned_cols=116 Identities=13% Similarity=0.097 Sum_probs=88.5
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC-------CCcccccccch-------h---hH
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV-------MTLPFAANIDI-------R---DT 123 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~-------~~~~~~~~~~~-------~---~~ 123 (268)
.....+.+|++++|+|+||||||||+++|+|+.+|++|.++++|.+... ...+..+++.. . ..
T Consensus 42 nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~ 121 (549)
T PRK13545 42 NISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLTKEKIK 121 (549)
T ss_pred eeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCCHHHHH
Confidence 3344589999999999999999999999999999999999998764211 11122222211 0 11
Q ss_pred HHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc
Q 024413 124 IRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE 178 (268)
Q Consensus 124 ~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~ 178 (268)
..+.++++.+++....... +..|||||+||++||+|++.+|+++|+|||....
T Consensus 122 e~i~elLe~lgL~~~ld~~--~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgL 174 (549)
T PRK13545 122 EIIPEIIEFADIGKFIYQP--VKTYSSGMKSRLGFAISVHINPDILVIDEALSVG 174 (549)
T ss_pred HHHHHHHHHcCChhHhhCC--cccCCHHHHHHHHHHHHHHhCCCEEEEECCcccC
Confidence 2345678888887554444 8999999999999999999999999999998753
No 179
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=3.3e-20 Score=161.44 Aligned_cols=143 Identities=10% Similarity=0.025 Sum_probs=98.5
Q ss_pred cccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC--------C----------Ccccccccch----
Q 024413 63 INFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV--------M----------TLPFAANIDI---- 120 (268)
Q Consensus 63 ~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~--------~----------~~~~~~~~~~---- 120 (268)
...+.+|++++|+|+||||||||+++|+|..+|++|.++++|.+... . ..+..+++..
T Consensus 19 s~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~ 98 (235)
T cd03299 19 SLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKK 98 (235)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHHHHHHH
Confidence 34588999999999999999999999999999999999998865421 0 0111111110
Q ss_pred -----h-hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHh
Q 024413 121 -----R-DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFA 194 (268)
Q Consensus 121 -----~-~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~ 194 (268)
. ....+.++++.+++....... +..||+||+||++||+|++.+|+++++|||...-+.........+...+.
T Consensus 99 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~ 176 (235)
T cd03299 99 RKVDKKEIERKVLEIAEMLGIDHLLNRK--PETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIR 176 (235)
T ss_pred cCCCHHHHHHHHHHHHHHcCChhHHhcC--cccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHH
Confidence 0 112356678889987544433 88999999999999999999999999999987543222222223333333
Q ss_pred cc-CCcEEEEEEcC
Q 024413 195 ST-FPTVVTYVVDT 207 (268)
Q Consensus 195 ~~-~~d~vv~vvD~ 207 (268)
.. ...+++..+|.
T Consensus 177 ~~~~~tili~tH~~ 190 (235)
T cd03299 177 KEFGVTVLHVTHDF 190 (235)
T ss_pred HhcCCEEEEEecCH
Confidence 32 34555555544
No 180
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=3.3e-20 Score=165.74 Aligned_cols=117 Identities=9% Similarity=-0.002 Sum_probs=88.9
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcc---cEEEEecccCCC----------CCcc-----------ccc
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRN---IRGYVMNLDPAV----------MTLP-----------FAA 116 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~---g~i~i~~~~~~~----------~~~~-----------~~~ 116 (268)
.....+.+|++++|+|+||||||||+++|+|+..|+. |.++++|.+... ..++ ..+
T Consensus 25 ~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e 104 (282)
T PRK13640 25 DISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGD 104 (282)
T ss_pred eEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccCCHHH
Confidence 3344589999999999999999999999999999987 899998876421 0011 111
Q ss_pred ccch--h--------hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 117 NIDI--R--------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 117 ~~~~--~--------~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
++.. . ...++.++++.++|.+..... ++.||+||+||++||+|++.+|+++|+|||...-+
T Consensus 105 nl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~--~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD 175 (282)
T PRK13640 105 DVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSE--PANLSGGQKQRVAIAGILAVEPKIIILDESTSMLD 175 (282)
T ss_pred HHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCC--cccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCC
Confidence 1110 0 012466788999997654444 89999999999999999999999999999987543
No 181
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=3.3e-20 Score=178.32 Aligned_cols=145 Identities=9% Similarity=0.071 Sum_probs=101.1
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhccc-CcccEEEEecccCC-----------CCC-------------cccc
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQ-SRNIRGYVMNLDPA-----------VMT-------------LPFA 115 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~-~~~g~i~i~~~~~~-----------~~~-------------~~~~ 115 (268)
.....+++|++++|+|+||||||||+++|+|+.+ +++|.|++++.++. ... .+..
T Consensus 280 ~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~ 359 (506)
T PRK13549 280 DVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVG 359 (506)
T ss_pred ceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHH
Confidence 3455689999999999999999999999999998 59999999875431 000 1111
Q ss_pred cccch------------h---hHHHHHHHHHHcCCCC-CCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 116 ANIDI------------R---DTIRYKEVMKQFNLGP-NGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 116 ~~~~~------------~---~~~~~~~~l~~~~l~~-~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
+++.. . ....+.++++.+++.. ..... +.+||||||||++||+|++.+|+++|+|||+..-+
T Consensus 360 e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD 437 (506)
T PRK13549 360 KNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELA--IARLSGGNQQKAVLAKCLLLNPKILILDEPTRGID 437 (506)
T ss_pred HHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccc--cccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcC
Confidence 11110 0 1134667889999853 33333 89999999999999999999999999999988544
Q ss_pred hhhhhHHHHHHHHHhccCCcEEEEEEcC
Q 024413 180 FTWSASGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 180 ~~~~~~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
.........+...++.....+|+..+|.
T Consensus 438 ~~~~~~l~~~l~~l~~~g~tvi~~sHd~ 465 (506)
T PRK13549 438 VGAKYEIYKLINQLVQQGVAIIVISSEL 465 (506)
T ss_pred HhHHHHHHHHHHHHHHCCCEEEEECCCH
Confidence 3333333344444444444566666665
No 182
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.83 E-value=2.6e-20 Score=176.27 Aligned_cols=148 Identities=14% Similarity=0.047 Sum_probs=104.2
Q ss_pred CCcccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC------------------Ccccccccch
Q 024413 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM------------------TLPFAANIDI 120 (268)
Q Consensus 59 ~~~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~------------------~~~~~~~~~~ 120 (268)
.....+.+++|++++|+|++|||||||.++|+|+.+|++|.+.+.|.+.... +....+..++
T Consensus 307 v~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV 386 (539)
T COG1123 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTV 386 (539)
T ss_pred eeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccH
Confidence 4455666899999999999999999999999999999999999999771100 0000111111
Q ss_pred -----------------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhh
Q 024413 121 -----------------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWS 183 (268)
Q Consensus 121 -----------------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~ 183 (268)
..+.++.++++.++|.+... ..+|.+||||||||++|||||+.+|+++++|||.-..+-+-.
T Consensus 387 ~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l-~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvq 465 (539)
T COG1123 387 GDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFL-DRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQ 465 (539)
T ss_pred HHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHH-hcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHH
Confidence 11235888999999996522 234999999999999999999999999999999664432223
Q ss_pred hHHHHHHHHHhccC-CcEEEEEEcC
Q 024413 184 ASGAIITEAFASTF-PTVVTYVVDT 207 (268)
Q Consensus 184 ~~~~~i~~~~~~~~-~d~vv~vvD~ 207 (268)
.....+...++.+. ...++..||-
T Consensus 466 a~VlnLl~~lq~e~g~t~lfISHDl 490 (539)
T COG1123 466 AQVLNLLKDLQEELGLTYLFISHDL 490 (539)
T ss_pred HHHHHHHHHHHHHhCCEEEEEeCCH
Confidence 33334444444443 3444444555
No 183
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.83 E-value=2.7e-20 Score=155.38 Aligned_cols=82 Identities=17% Similarity=0.177 Sum_probs=69.5
Q ss_pred cccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccc
Q 024413 65 FKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTS 144 (268)
Q Consensus 65 ~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 144 (268)
.+++|++++|+||||||||||+++|+|+.+|++|.+.+++.+... .+..
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~--~~q~----------------------------- 69 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVY--KPQY----------------------------- 69 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEE--Eccc-----------------------------
Confidence 478999999999999999999999999999999999998753210 0000
Q ss_pred hhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc
Q 024413 145 LNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE 178 (268)
Q Consensus 145 ~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~ 178 (268)
+ .||+||+||+++|++++.+|+++|+|||...-
T Consensus 70 ~-~LSgGq~qrv~laral~~~p~lllLDEPts~L 102 (177)
T cd03222 70 I-DLSGGELQRVAIAAALLRNATFYLFDEPSAYL 102 (177)
T ss_pred C-CCCHHHHHHHHHHHHHhcCCCEEEEECCcccC
Confidence 1 19999999999999999999999999998754
No 184
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.83 E-value=3.1e-20 Score=178.71 Aligned_cols=146 Identities=14% Similarity=0.108 Sum_probs=101.9
Q ss_pred CcccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCC-----------CCCccc-------------c
Q 024413 60 SSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-----------VMTLPF-------------A 115 (268)
Q Consensus 60 ~~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~-----------~~~~~~-------------~ 115 (268)
......+++|++++|+|+||||||||+++|+|+.+|++|.+++++.+.. ...++. .
T Consensus 280 ~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~ 359 (510)
T PRK15439 280 RNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLA 359 (510)
T ss_pred cceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHH
Confidence 3445568999999999999999999999999999999999999886431 111111 0
Q ss_pred cccc--------h-----hhHHHHHHHHHHcCCC-CCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhh
Q 024413 116 ANID--------I-----RDTIRYKEVMKQFNLG-PNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFT 181 (268)
Q Consensus 116 ~~~~--------~-----~~~~~~~~~l~~~~l~-~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~ 181 (268)
+++. . .....+.++++.+++. ...... +..||||||||++||++++.+|+++|+|||+..-+..
T Consensus 360 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~ 437 (510)
T PRK15439 360 WNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQA--ARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVS 437 (510)
T ss_pred HHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCc--cccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChh
Confidence 1110 0 0112356788999986 343333 8999999999999999999999999999998854322
Q ss_pred hhhHHHHHHHHHhccCCcEEEEEEcC
Q 024413 182 WSASGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 182 ~~~~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
.......+...++.....+|+..+|.
T Consensus 438 ~~~~l~~~l~~l~~~g~tiIivsHd~ 463 (510)
T PRK15439 438 ARNDIYQLIRSIAAQNVAVLFISSDL 463 (510)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCCH
Confidence 22333333344433445566666665
No 185
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.83 E-value=3.5e-20 Score=163.38 Aligned_cols=145 Identities=14% Similarity=0.041 Sum_probs=97.7
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEeccc-----CCC--------------CCccccc-----
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLD-----PAV--------------MTLPFAA----- 116 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~-----~~~--------------~~~~~~~----- 116 (268)
.....+++|++++|+|+||||||||+++|+|.++|++|.+++++.+ ... ..++...
T Consensus 24 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 103 (258)
T PRK11701 24 DVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLR 103 (258)
T ss_pred eeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCcccccC
Confidence 3344589999999999999999999999999999999999998875 210 0111111
Q ss_pred -------ccch-----------hhHHHHHHHHHHcCCCC-CCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCc
Q 024413 117 -------NIDI-----------RDTIRYKEVMKQFNLGP-NGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQI 177 (268)
Q Consensus 117 -------~~~~-----------~~~~~~~~~l~~~~l~~-~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~ 177 (268)
++.. .....+.++++.+++.. ... ..+..|||||+||++||+|++.+|+++|+|||+..
T Consensus 104 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~ 181 (258)
T PRK11701 104 MQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARID--DLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGG 181 (258)
T ss_pred ccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHh--CCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 1100 00224567788888863 222 33889999999999999999999999999999875
Q ss_pred chhhhhhHHHHHHHHHhcc-CCcEEEEEEcC
Q 024413 178 EIFTWSASGAIITEAFAST-FPTVVTYVVDT 207 (268)
Q Consensus 178 ~~~~~~~~~~~i~~~~~~~-~~d~vv~vvD~ 207 (268)
-+.........+.+.+... ...+|+..+|.
T Consensus 182 LD~~~~~~l~~~l~~~~~~~~~tii~isH~~ 212 (258)
T PRK11701 182 LDVSVQARLLDLLRGLVRELGLAVVIVTHDL 212 (258)
T ss_pred CCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH
Confidence 4322222222333333332 33445544554
No 186
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.83 E-value=4.9e-20 Score=163.22 Aligned_cols=116 Identities=13% Similarity=0.061 Sum_probs=86.4
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCC-------CCCcccccccch-------h--h-H
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-------VMTLPFAANIDI-------R--D-T 123 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~-------~~~~~~~~~~~~-------~--~-~ 123 (268)
.....+++|++++|+|+||||||||+++|+|..+|++|.+.+.+.... ....+..+++.. . . .
T Consensus 42 ~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~ 121 (264)
T PRK13546 42 DISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIK 121 (264)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHH
Confidence 445568999999999999999999999999999999999998774211 111222222211 0 0 1
Q ss_pred HHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc
Q 024413 124 IRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE 178 (268)
Q Consensus 124 ~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~ 178 (268)
..+..+++.+++.+..... +..||+||+||+++|+|++.+|+++|+|||...-
T Consensus 122 ~~~~~~l~~~~l~~~~~~~--~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gL 174 (264)
T PRK13546 122 AMTPKIIEFSELGEFIYQP--VKKYSSGMRAKLGFSINITVNPDILVIDEALSVG 174 (264)
T ss_pred HHHHHHHHHcCCchhhcCC--cccCCHHHHHHHHHHHHHhhCCCEEEEeCccccC
Confidence 1234567777876544433 8899999999999999999999999999998754
No 187
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.83 E-value=4.1e-20 Score=177.33 Aligned_cols=145 Identities=10% Similarity=0.098 Sum_probs=101.6
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccC-cccEEEEecccCCC-----------CCcc-------------cc
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQS-RNIRGYVMNLDPAV-----------MTLP-------------FA 115 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~-~~g~i~i~~~~~~~-----------~~~~-------------~~ 115 (268)
.....+.+|++++|+|+||||||||+++|+|+.+| ++|.++++|.+... ..++ ..
T Consensus 278 ~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~ 357 (500)
T TIGR02633 278 DVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVG 357 (500)
T ss_pred cceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHH
Confidence 44555899999999999999999999999999985 89999998754310 0000 01
Q ss_pred cccch------------h---hHHHHHHHHHHcCCCC-CCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 116 ANIDI------------R---DTIRYKEVMKQFNLGP-NGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 116 ~~~~~------------~---~~~~~~~~l~~~~l~~-~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
+++.. . ....+.++++.+++.. .... .+..||||||||++||++++.+|+++|+|||+..-+
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD 435 (500)
T TIGR02633 358 KNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFL--PIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVD 435 (500)
T ss_pred HHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccC--ccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcC
Confidence 11100 0 1234667889999853 2333 389999999999999999999999999999988644
Q ss_pred hhhhhHHHHHHHHHhccCCcEEEEEEcC
Q 024413 180 FTWSASGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 180 ~~~~~~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
.........+...++.....+|+..||.
T Consensus 436 ~~~~~~l~~~l~~l~~~g~tviivsHd~ 463 (500)
T TIGR02633 436 VGAKYEIYKLINQLAQEGVAIIVVSSEL 463 (500)
T ss_pred HhHHHHHHHHHHHHHhCCCEEEEECCCH
Confidence 3333333334444544445666766776
No 188
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=3.9e-20 Score=168.83 Aligned_cols=119 Identities=13% Similarity=0.055 Sum_probs=88.6
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhccc----CcccEEEEecccCCC--------------CCccccc------
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQ----SRNIRGYVMNLDPAV--------------MTLPFAA------ 116 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~----~~~g~i~i~~~~~~~--------------~~~~~~~------ 116 (268)
.....+.+|++++|+|+||||||||+++|+|+.+ +++|.|+++|.+... ..+++..
T Consensus 25 ~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p 104 (330)
T PRK15093 25 RVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDP 104 (330)
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcchhcCc
Confidence 3445589999999999999999999999999986 578999998875421 0011110
Q ss_pred ccch----------------------hhHHHHHHHHHHcCCCCCC-CcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeC
Q 024413 117 NIDI----------------------RDTIRYKEVMKQFNLGPNG-GILTSLNLFTTKFDEVISLIERRADHLDYVLVDT 173 (268)
Q Consensus 117 ~~~~----------------------~~~~~~~~~l~~~~l~~~~-~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDe 173 (268)
.+.+ ....++.++++.++|.... ....++.+|||||+||++||+|++.+|+++|+||
T Consensus 105 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDE 184 (330)
T PRK15093 105 SERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADE 184 (330)
T ss_pred cccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeC
Confidence 0000 0123466789999997532 2334589999999999999999999999999999
Q ss_pred CCCcch
Q 024413 174 PGQIEI 179 (268)
Q Consensus 174 PG~~~~ 179 (268)
|+...+
T Consensus 185 Pts~LD 190 (330)
T PRK15093 185 PTNAME 190 (330)
T ss_pred CCCcCC
Confidence 987543
No 189
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.83 E-value=7.7e-20 Score=157.74 Aligned_cols=146 Identities=12% Similarity=0.061 Sum_probs=95.9
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecc----cCC--------------CCCcccc-------
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNL----DPA--------------VMTLPFA------- 115 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~----~~~--------------~~~~~~~------- 115 (268)
.....+.+|++++|+|+||||||||+++|+|.++|++|.+++++. +.. ...++..
T Consensus 26 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 105 (224)
T TIGR02324 26 NVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRV 105 (224)
T ss_pred cceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccccCCCc
Confidence 334458899999999999999999999999999999999999731 210 0011111
Q ss_pred ---cccch-------h---hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhh
Q 024413 116 ---ANIDI-------R---DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTW 182 (268)
Q Consensus 116 ---~~~~~-------~---~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~ 182 (268)
+++.. . ....+.++++.+++.... ....+..||+||+||++||+|++.+|+++|+|||+..-+...
T Consensus 106 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~ 184 (224)
T TIGR02324 106 SALEVVAEPLLERGVPREAARARARELLARLNIPERL-WHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAAN 184 (224)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-hhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 11110 0 123456678888886422 122388999999999999999999999999999987543222
Q ss_pred hhHHHHHHHHHhccCCcEEEEEEcC
Q 024413 183 SASGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 183 ~~~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
......+...++.....+++..+|.
T Consensus 185 ~~~l~~~l~~~~~~g~tii~vsH~~ 209 (224)
T TIGR02324 185 RQVVVELIAEAKARGAALIGIFHDE 209 (224)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 2222233333333333445544553
No 190
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=4.1e-20 Score=164.73 Aligned_cols=144 Identities=10% Similarity=-0.017 Sum_probs=99.0
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC----------CCccc-----------ccccc
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV----------MTLPF-----------AANID 119 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~----------~~~~~-----------~~~~~ 119 (268)
.....+.+|++++|+|+||||||||+++|+|+.+|++|.++++|.+... ..++. .+++.
T Consensus 25 ~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~ 104 (277)
T PRK13642 25 GVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVA 104 (277)
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHHHHHH
Confidence 3344589999999999999999999999999999999999998875421 00011 11111
Q ss_pred h--h-----h---HHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch-hhhhhHHHH
Q 024413 120 I--R-----D---TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI-FTWSASGAI 188 (268)
Q Consensus 120 ~--~-----~---~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~-~~~~~~~~~ 188 (268)
. . . ..++.++++.+++...... .+..|||||+||++||+|++.+|+++|+|||...-+ .+......
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~- 181 (277)
T PRK13642 105 FGMENQGIPREEMIKRVDEALLAVNMLDFKTR--EPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMR- 181 (277)
T ss_pred hhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhC--CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH-
Confidence 0 0 0 1235677888888754443 388999999999999999999999999999987543 32232333
Q ss_pred HHHHHhcc-CCcEEEEEEcC
Q 024413 189 ITEAFAST-FPTVVTYVVDT 207 (268)
Q Consensus 189 i~~~~~~~-~~d~vv~vvD~ 207 (268)
+...+... ...+++..+|.
T Consensus 182 ~l~~l~~~~g~tiil~sH~~ 201 (277)
T PRK13642 182 VIHEIKEKYQLTVLSITHDL 201 (277)
T ss_pred HHHHHHHhcCCEEEEEeCCH
Confidence 33333332 34455544554
No 191
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.83 E-value=5.4e-20 Score=159.07 Aligned_cols=144 Identities=14% Similarity=0.132 Sum_probs=96.0
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhccc---CcccEEEEecccCCC-----------CC------cccccccch
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQ---SRNIRGYVMNLDPAV-----------MT------LPFAANIDI 120 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~---~~~g~i~i~~~~~~~-----------~~------~~~~~~~~~ 120 (268)
.....+++|++++|+||||||||||+++|+|..+ +++|.++++|.+... +. .+..+++..
T Consensus 25 ~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~ 104 (226)
T cd03234 25 DVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTY 104 (226)
T ss_pred CceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHHHHHHH
Confidence 3344589999999999999999999999999999 899999998865321 00 111111111
Q ss_pred ----h---------hHHHHHH-HHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc-hhhhhhH
Q 024413 121 ----R---------DTIRYKE-VMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE-IFTWSAS 185 (268)
Q Consensus 121 ----~---------~~~~~~~-~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~-~~~~~~~ 185 (268)
. ....+.+ .++.+++...... .++.||+||+||+++|++++.+|+++|+|||...- +.+....
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~ 182 (226)
T cd03234 105 TAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGN--LVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNL 182 (226)
T ss_pred HHHhhcccccchHHHHHHHHHHHHHhhcchhhhcc--cccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHH
Confidence 0 0112333 6777777644333 37899999999999999999999999999998754 3222223
Q ss_pred HHHHHHHHhccCCcEEEEEEcC
Q 024413 186 GAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 186 ~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
.. +...+......+++..++.
T Consensus 183 ~~-~l~~~~~~~~tiii~sh~~ 203 (226)
T cd03234 183 VS-TLSQLARRNRIVILTIHQP 203 (226)
T ss_pred HH-HHHHHHHCCCEEEEEecCC
Confidence 33 3333333334555555554
No 192
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.83 E-value=4e-20 Score=158.75 Aligned_cols=113 Identities=12% Similarity=-0.050 Sum_probs=80.9
Q ss_pred cccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEE-EecccCCC-------CCcccccccch------hhHHH-HH
Q 024413 63 INFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGY-VMNLDPAV-------MTLPFAANIDI------RDTIR-YK 127 (268)
Q Consensus 63 ~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~-i~~~~~~~-------~~~~~~~~~~~------~~~~~-~~ 127 (268)
...+.+|++++|+||||||||||+++|+|+.+|++|.++ +.+..... ..++..+++.. .+... ..
T Consensus 7 s~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~~~~~~~ 86 (213)
T PRK15177 7 DFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLDGDEFSH 86 (213)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCCHHHHHH
Confidence 345889999999999999999999999999999999997 65543211 11222222221 01111 22
Q ss_pred HHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCc
Q 024413 128 EVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQI 177 (268)
Q Consensus 128 ~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~ 177 (268)
.+.+.+++..... ..++.||+||+||+++|+|++.+|+++|+|||...
T Consensus 87 ~~~~~~~l~~~~~--~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~ 134 (213)
T PRK15177 87 FCYQLTQLEQCYT--DRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYT 134 (213)
T ss_pred HHHHHhChhHHhh--chHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcc
Confidence 2334556654333 34899999999999999999999999999999553
No 193
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.83 E-value=4.3e-20 Score=168.47 Aligned_cols=119 Identities=9% Similarity=0.018 Sum_probs=89.2
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCc---ccEEEEecccCCCC--------------Ccccc------cc
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSR---NIRGYVMNLDPAVM--------------TLPFA------AN 117 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~---~g~i~i~~~~~~~~--------------~~~~~------~~ 117 (268)
...+.+.+|++++|+|+||||||||+++|+|+.++. +|.|+++|.+.... .+++. +.
T Consensus 34 ~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~ 113 (330)
T PRK09473 34 DLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPY 113 (330)
T ss_pred eeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCC
Confidence 445568999999999999999999999999999885 99999998764210 00111 01
Q ss_pred cch----------h-------hHHHHHHHHHHcCCCCCC-CcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 118 IDI----------R-------DTIRYKEVMKQFNLGPNG-GILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 118 ~~~----------~-------~~~~~~~~l~~~~l~~~~-~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
+.+ . ...++.++++.++|.... ....++++|||||+||++||+|++.+|+++|+|||+-..+
T Consensus 114 ~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD 193 (330)
T PRK09473 114 MRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALD 193 (330)
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCC
Confidence 111 0 123466788889986422 1234589999999999999999999999999999987544
No 194
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=8.1e-20 Score=160.22 Aligned_cols=145 Identities=14% Similarity=0.044 Sum_probs=96.0
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccC-----cccEEEEecccCCC----------C----------Cccccc
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQS-----RNIRGYVMNLDPAV----------M----------TLPFAA 116 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~-----~~g~i~i~~~~~~~----------~----------~~~~~~ 116 (268)
....+++|++++|+|+||||||||+++|+|...+ ++|.|+++|.+... . ..+..+
T Consensus 22 is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~e 101 (250)
T PRK14247 22 VNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFE 101 (250)
T ss_pred ceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCCCcHHH
Confidence 3445889999999999999999999999999874 69999998875321 0 011111
Q ss_pred ccch--h------h----HHHHHHHHHHcCCCCC--CCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhh
Q 024413 117 NIDI--R------D----TIRYKEVMKQFNLGPN--GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTW 182 (268)
Q Consensus 117 ~~~~--~------~----~~~~~~~l~~~~l~~~--~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~ 182 (268)
++.. . . ...+.++++.+++... ......+..|||||+||+++|+|++.+|+++|+|||...-+...
T Consensus 102 nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~ 181 (250)
T PRK14247 102 NVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPEN 181 (250)
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHH
Confidence 1110 0 0 1235567888888542 12334488999999999999999999999999999987543222
Q ss_pred hhHHHHHHHHHhccCCcEEEEEEcC
Q 024413 183 SASGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 183 ~~~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
......+...+.. ...+|+..+|.
T Consensus 182 ~~~l~~~l~~~~~-~~tiii~sH~~ 205 (250)
T PRK14247 182 TAKIESLFLELKK-DMTIVLVTHFP 205 (250)
T ss_pred HHHHHHHHHHHhc-CCEEEEEeCCH
Confidence 2222233333332 23444444554
No 195
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.83 E-value=9.3e-20 Score=152.62 Aligned_cols=135 Identities=12% Similarity=0.054 Sum_probs=85.0
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCC--------ccccc-c---cchhhHHHHHH
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT--------LPFAA-N---IDIRDTIRYKE 128 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~--------~~~~~-~---~~~~~~~~~~~ 128 (268)
.....+++|++++|+|+||||||||+++|+|.++|++|.++++|.+..... ..+.. . ........+.+
T Consensus 18 ~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e 97 (182)
T cd03215 18 DVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAE 97 (182)
T ss_pred ceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHH
Confidence 334458899999999999999999999999999999999999987643210 00000 0 00000001111
Q ss_pred HHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcC
Q 024413 129 VMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 129 ~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
.+.. ...||+||+||++||+|++.+|+++|+|||...-+.........+...+......+++..+|.
T Consensus 98 ~l~~------------~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~ 164 (182)
T cd03215 98 NIAL------------SSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSEL 164 (182)
T ss_pred HHHH------------HhhcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 1100 112999999999999999999999999999875432222223333333333333444444443
No 196
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=8.4e-20 Score=160.38 Aligned_cols=146 Identities=12% Similarity=0.005 Sum_probs=96.2
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccC-----cccEEEEecccCCC------------CC----------cc
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQS-----RNIRGYVMNLDPAV------------MT----------LP 113 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~-----~~g~i~i~~~~~~~------------~~----------~~ 113 (268)
.....+.+|++++|+|+||||||||+++|+|+++| ++|.|+++|.+... .. .+
T Consensus 22 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~t 101 (253)
T PRK14267 22 GVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLT 101 (253)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccCCCCc
Confidence 33445889999999999999999999999999987 48999998865420 00 01
Q ss_pred cccccch----h----h----HHHHHHHHHHcCCCCC--CCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 114 FAANIDI----R----D----TIRYKEVMKQFNLGPN--GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 114 ~~~~~~~----~----~----~~~~~~~l~~~~l~~~--~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
..+++.. . . ...+.++++.+++... ......+..|||||+||++||+|++.+|+++|+|||+..-+
T Consensus 102 v~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD 181 (253)
T PRK14267 102 IYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANID 181 (253)
T ss_pred HHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCC
Confidence 1111111 0 0 1234567778887532 12334488999999999999999999999999999987543
Q ss_pred hhhhhHHHHHHHHHhccCCcEEEEEEcC
Q 024413 180 FTWSASGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 180 ~~~~~~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
.........+...++. ...+|+..+|.
T Consensus 182 ~~~~~~l~~~l~~~~~-~~tiii~sH~~ 208 (253)
T PRK14267 182 PVGTAKIEELLFELKK-EYTIVLVTHSP 208 (253)
T ss_pred HHHHHHHHHHHHHHhh-CCEEEEEECCH
Confidence 2222222333333333 24455554554
No 197
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.83 E-value=7.5e-20 Score=162.31 Aligned_cols=145 Identities=11% Similarity=0.014 Sum_probs=98.1
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC-------------Ccc------cccccch-
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM-------------TLP------FAANIDI- 120 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~-------------~~~------~~~~~~~- 120 (268)
.....+.+|++++|+|+||||||||+++|+|...|++|.+.++|.+.... .++ +......
T Consensus 30 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~ 109 (268)
T PRK10419 30 NVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVR 109 (268)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCCCCCHH
Confidence 33445899999999999999999999999999999999999988753210 000 1000110
Q ss_pred ----------------hhHHHHHHHHHHcCCCC-CCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhh
Q 024413 121 ----------------RDTIRYKEVMKQFNLGP-NGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWS 183 (268)
Q Consensus 121 ----------------~~~~~~~~~l~~~~l~~-~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~ 183 (268)
.....+.++++.+++.. .... .+..||+||+||++||++++.+|+++|+|||....+....
T Consensus 110 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~ 187 (268)
T PRK10419 110 EIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDK--RPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQ 187 (268)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhC--CCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHH
Confidence 01124667888888863 3333 3789999999999999999999999999999875432222
Q ss_pred hHHHHHHHHHhcc-CCcEEEEEEcC
Q 024413 184 ASGAIITEAFAST-FPTVVTYVVDT 207 (268)
Q Consensus 184 ~~~~~i~~~~~~~-~~d~vv~vvD~ 207 (268)
.....+.+.+... ...+|+..+|.
T Consensus 188 ~~~~~~l~~~~~~~~~tiiivsH~~ 212 (268)
T PRK10419 188 AGVIRLLKKLQQQFGTACLFITHDL 212 (268)
T ss_pred HHHHHHHHHHHHHcCcEEEEEECCH
Confidence 2222333333332 34455554554
No 198
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.83 E-value=9.1e-20 Score=160.69 Aligned_cols=140 Identities=14% Similarity=0.099 Sum_probs=95.8
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEE-----------EecccCCC----------------CCccccc--
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGY-----------VMNLDPAV----------------MTLPFAA-- 116 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~-----------i~~~~~~~----------------~~~~~~~-- 116 (268)
+.+|++++|+|+||||||||+++|+|+++|++|.+. +.+.+... ......+
T Consensus 23 i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 102 (255)
T cd03236 23 PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKPQYVDLIPKA 102 (255)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeeecchhccCchH
Confidence 789999999999999999999999999999999996 44543210 0000000
Q ss_pred ---c----cch-hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHH
Q 024413 117 ---N----IDI-RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAI 188 (268)
Q Consensus 117 ---~----~~~-~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~ 188 (268)
+ +.. .....+.++++.+++....... +..||+||+||+++|++++.+|+++|+|||+..-+.........
T Consensus 103 ~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~ 180 (255)
T cd03236 103 VKGKVGELLKKKDERGKLDELVDQLELRHVLDRN--IDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAAR 180 (255)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCC--hhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHH
Confidence 0 000 1234577789999997654444 88999999999999999999999999999987543222222233
Q ss_pred HHHHHhccCCcEEEEEEcC
Q 024413 189 ITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 189 i~~~~~~~~~d~vv~vvD~ 207 (268)
+.+.++.....+++..+|.
T Consensus 181 ~l~~l~~~~~tIIiiSHd~ 199 (255)
T cd03236 181 LIRELAEDDNYVLVVEHDL 199 (255)
T ss_pred HHHHHHhcCCEEEEEECCH
Confidence 3344433334445444444
No 199
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=7.1e-20 Score=152.13 Aligned_cols=137 Identities=13% Similarity=0.023 Sum_probs=85.5
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCc
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGI 141 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 141 (268)
....+.+|++++|+|+||||||||+++|+|+.+|++|.+++++.+...........+.. +.+...+.+....
T Consensus 19 ~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~--------~~q~~~~~~~~tv 90 (173)
T cd03230 19 ISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGY--------LPEEPSLYENLTV 90 (173)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEE--------EecCCccccCCcH
Confidence 34458899999999999999999999999999999999999887542110000000000 0000001000000
Q ss_pred ccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcC
Q 024413 142 LTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 142 ~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
...+. ||+||+||++||+|++.+|+++|+|||...-+.........+.+.+......+++..+|.
T Consensus 91 ~~~~~-LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~ 155 (173)
T cd03230 91 RENLK-LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHIL 155 (173)
T ss_pred HHHhh-cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH
Confidence 00011 999999999999999999999999999875443333333333344433333445544544
No 200
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.82 E-value=9.1e-20 Score=161.07 Aligned_cols=145 Identities=12% Similarity=0.036 Sum_probs=99.0
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCc---ccEEEEecccCCC---------------CC----------c
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSR---NIRGYVMNLDPAV---------------MT----------L 112 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~---~g~i~i~~~~~~~---------------~~----------~ 112 (268)
.....+.+|++++|+|+||||||||+++|+|...|+ +|.++++|.+... .. .
T Consensus 22 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 101 (262)
T PRK09984 22 AVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRL 101 (262)
T ss_pred cceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccccccCC
Confidence 344458899999999999999999999999999876 4899988865311 00 0
Q ss_pred ccccccch------------------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCC
Q 024413 113 PFAANIDI------------------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP 174 (268)
Q Consensus 113 ~~~~~~~~------------------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDeP 174 (268)
+..+++.. ....++.++++.+++...... .+..||+||+||++||+|++.+|+++|+|||
T Consensus 102 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~~~LS~G~~qrv~laral~~~p~llllDEP 179 (262)
T PRK09984 102 SVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQ--RVSTLSGGQQQRVAIARALMQQAKVILADEP 179 (262)
T ss_pred cHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhC--CccccCHHHHHHHHHHHHHhcCCCEEEecCc
Confidence 11111110 012346778888998743333 3889999999999999999999999999999
Q ss_pred CCcchhhhhhHHHHHHHHHhc-cCCcEEEEEEcC
Q 024413 175 GQIEIFTWSASGAIITEAFAS-TFPTVVTYVVDT 207 (268)
Q Consensus 175 G~~~~~~~~~~~~~i~~~~~~-~~~d~vv~vvD~ 207 (268)
+...+.........+++.+.. ....+|+..+|.
T Consensus 180 t~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~ 213 (262)
T PRK09984 180 IASLDPESARIVMDTLRDINQNDGITVVVTLHQV 213 (262)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 875432222233333334433 234566665665
No 201
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.82 E-value=9e-20 Score=160.77 Aligned_cols=145 Identities=12% Similarity=0.008 Sum_probs=95.4
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccC-----cccEEEEecccCCC------------CC----------ccc
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQS-----RNIRGYVMNLDPAV------------MT----------LPF 114 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~-----~~g~i~i~~~~~~~------------~~----------~~~ 114 (268)
....+++|++++|+|+||||||||+++|+|...| ++|.|+++|.+... .. .+.
T Consensus 23 isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 102 (258)
T PRK14241 23 VNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSI 102 (258)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccCCCCcH
Confidence 3445899999999999999999999999999874 69999998865410 00 111
Q ss_pred ccccch----h---h----HHHHHHHHHHcCCCCC--CCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhh
Q 024413 115 AANIDI----R---D----TIRYKEVMKQFNLGPN--GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFT 181 (268)
Q Consensus 115 ~~~~~~----~---~----~~~~~~~l~~~~l~~~--~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~ 181 (268)
.+++.. . . ...+.++++.+++... ......+..|||||+||++||+|++.+|+++|+|||+..-+..
T Consensus 103 ~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~ 182 (258)
T PRK14241 103 RDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPI 182 (258)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHH
Confidence 111110 0 0 1234557777887421 1223447899999999999999999999999999998754322
Q ss_pred hhhHHHHHHHHHhccCCcEEEEEEcC
Q 024413 182 WSASGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 182 ~~~~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
.......+...++. ...+|+..+|.
T Consensus 183 ~~~~l~~~l~~~~~-~~tviivsH~~ 207 (258)
T PRK14241 183 STLAIEDLINELKQ-DYTIVIVTHNM 207 (258)
T ss_pred HHHHHHHHHHHHhc-CCEEEEEecCH
Confidence 22233333334433 23444444444
No 202
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.82 E-value=6.1e-20 Score=159.67 Aligned_cols=118 Identities=16% Similarity=0.046 Sum_probs=80.4
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC----------CC---------cccccccch--
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV----------MT---------LPFAANIDI-- 120 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~----------~~---------~~~~~~~~~-- 120 (268)
....+.+|++++|+|+||||||||+++|+|+.+|++|.++++|.+... .. .+..+++..
T Consensus 21 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~ 100 (237)
T cd03252 21 ISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALAD 100 (237)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhccchHHHHhhccC
Confidence 344588999999999999999999999999999999999998865311 00 011111111
Q ss_pred --hhHHHHHHHHHHcCCCC---------CCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 121 --RDTIRYKEVMKQFNLGP---------NGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 121 --~~~~~~~~~l~~~~l~~---------~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
.....+.+.++..++.. .......+..|||||+||++||+|++.+|+++|+|||...-+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD 170 (237)
T cd03252 101 PGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALD 170 (237)
T ss_pred CCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCC
Confidence 01112222222222211 111122378999999999999999999999999999987543
No 203
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.82 E-value=1e-19 Score=158.48 Aligned_cols=115 Identities=19% Similarity=0.169 Sum_probs=87.7
Q ss_pred cccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC------------------Ccccccccch----
Q 024413 63 INFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM------------------TLPFAANIDI---- 120 (268)
Q Consensus 63 ~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~------------------~~~~~~~~~~---- 120 (268)
...+.+|++++|+|+||||||||+++|+|..++++|.++++|.+.... ..+..+++..
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~ 99 (237)
T TIGR00968 20 NLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEI 99 (237)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHHHHhHHHh
Confidence 345899999999999999999999999999999999999988653210 0111111111
Q ss_pred ------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 121 ------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 121 ------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
.....+.++++.+++....... +..||+||+||+++|++++.+|+++|+|||...-+
T Consensus 100 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD 162 (237)
T TIGR00968 100 RKHPKAKIKARVEELLELVQLEGLGDRY--PNQLSGGQRQRVALARALAVEPQVLLLDEPFGALD 162 (237)
T ss_pred cCCCHHHHHHHHHHHHHHcCCHhHhhCC--hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 0123456788888886544433 78999999999999999999999999999987543
No 204
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.82 E-value=1.2e-19 Score=159.32 Aligned_cols=146 Identities=11% Similarity=0.017 Sum_probs=95.7
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhccc-----CcccEEEEecccCCC------------CCcc---------c
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQ-----SRNIRGYVMNLDPAV------------MTLP---------F 114 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~-----~~~g~i~i~~~~~~~------------~~~~---------~ 114 (268)
.....+++|++++|+|+||||||||+++|+|+.. +++|.++++|.+... ..++ .
T Consensus 24 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv 103 (253)
T PRK14242 24 DISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSI 103 (253)
T ss_pred ceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCCcCcH
Confidence 3344589999999999999999999999999864 579999998865421 0001 1
Q ss_pred ccccchh-----------hHHHHHHHHHHcCCCCC--CCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhh
Q 024413 115 AANIDIR-----------DTIRYKEVMKQFNLGPN--GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFT 181 (268)
Q Consensus 115 ~~~~~~~-----------~~~~~~~~l~~~~l~~~--~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~ 181 (268)
.+++... ....+.++++.+++... ......+..|||||+||++||+|++.+|+++|+|||+..-+..
T Consensus 104 ~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~ 183 (253)
T PRK14242 104 FENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPI 183 (253)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 1111110 01234556777887531 1122347889999999999999999999999999998754322
Q ss_pred hhhHHHHHHHHHhccCCcEEEEEEcC
Q 024413 182 WSASGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 182 ~~~~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
.......+...+.. ...+++..+|.
T Consensus 184 ~~~~l~~~l~~~~~-~~tvii~tH~~ 208 (253)
T PRK14242 184 ATQKIEELIHELKA-RYTIIIVTHNM 208 (253)
T ss_pred HHHHHHHHHHHHhc-CCeEEEEEecH
Confidence 22233333333433 34455555554
No 205
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.82 E-value=1.1e-19 Score=159.53 Aligned_cols=144 Identities=17% Similarity=0.075 Sum_probs=97.2
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC----------CCcc----------cccccch
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV----------MTLP----------FAANIDI 120 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~----------~~~~----------~~~~~~~ 120 (268)
.....+++|++++|+|+||||||||+++|+|+.+ .+|.++++|.+... ..++ ..+++..
T Consensus 14 ~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~ 92 (248)
T PRK03695 14 PLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYLTL 92 (248)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHHHHh
Confidence 3444589999999999999999999999999985 48999998865321 0011 1111111
Q ss_pred ------h---hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhc-------CCCEEEEeCCCCcchhhhhh
Q 024413 121 ------R---DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRAD-------HLDYVLVDTPGQIEIFTWSA 184 (268)
Q Consensus 121 ------~---~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~-------~~~illlDePG~~~~~~~~~ 184 (268)
. ...++.++++.+++....... +..||+||+||++||+|++. +|+++|+|||...-+.....
T Consensus 93 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~ 170 (248)
T PRK03695 93 HQPDKTRTEAVASALNEVAEALGLDDKLGRS--VNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQA 170 (248)
T ss_pred cCccCCCcHHHHHHHHHHHHHcCCHhHhcCC--cccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHH
Confidence 0 123467788999987544433 88999999999999999997 67999999998754322222
Q ss_pred HHHHHHHHHhccCCcEEEEEEcC
Q 024413 185 SGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 185 ~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
....+...++.....+++..+|.
T Consensus 171 ~l~~~L~~~~~~~~tvi~~sH~~ 193 (248)
T PRK03695 171 ALDRLLSELCQQGIAVVMSSHDL 193 (248)
T ss_pred HHHHHHHHHHhCCCEEEEEecCH
Confidence 33333333433334555555554
No 206
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.82 E-value=1.6e-19 Score=150.60 Aligned_cols=135 Identities=14% Similarity=0.080 Sum_probs=89.5
Q ss_pred CcccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCC-
Q 024413 60 SSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPN- 138 (268)
Q Consensus 60 ~~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~- 138 (268)
......+++|++++|+||||||||||++++.+ ++|.+.+.+........+ +-.... .++++.+++...
T Consensus 12 ~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----~~G~v~~~~~~~~~~~~~----~~~~~q---~~~l~~~~L~~~~ 80 (176)
T cd03238 12 QNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----ASGKARLISFLPKFSRNK----LIFIDQ---LQFLIDVGLGYLT 80 (176)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----cCCcEEECCccccccccc----EEEEhH---HHHHHHcCCCccc
Confidence 34455689999999999999999999999863 688888765532111100 001111 467888998753
Q ss_pred CCcccchhhhcHHHHHHHHHHHHHhcC--CCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcC
Q 024413 139 GGILTSLNLFTTKFDEVISLIERRADH--LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 139 ~~~~~~~~~lS~G~~qr~~ia~al~~~--~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
.... +..||+||+||+++|++++.+ |+++|+|||...-+...........+.+......+++..+|.
T Consensus 81 ~~~~--~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~ 149 (176)
T cd03238 81 LGQK--LSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNL 149 (176)
T ss_pred cCCC--cCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 3333 889999999999999999999 999999999875432222222222333333334455544444
No 207
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.82 E-value=6.8e-20 Score=180.13 Aligned_cols=117 Identities=14% Similarity=0.015 Sum_probs=88.8
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC-------------CCcccc------cccchh
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV-------------MTLPFA------ANIDIR 121 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~-------------~~~~~~------~~~~~~ 121 (268)
...+.+.+|++++|+|+||||||||+++|+|+.+|++|.|+++|.+... ..+++. ..+.+.
T Consensus 342 ~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~ 421 (623)
T PRK10261 342 KVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVG 421 (623)
T ss_pred eeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHH
Confidence 4455589999999999999999999999999999999999998864311 011111 011110
Q ss_pred -----------------hHHHHHHHHHHcCCCC-CCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 122 -----------------DTIRYKEVMKQFNLGP-NGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 122 -----------------~~~~~~~~l~~~~l~~-~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
...++.++++.++|.. ... ..+.+||||||||++||+|++.+|+++|+|||+...+
T Consensus 422 ~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~--~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD 495 (623)
T PRK10261 422 DSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAW--RYPHEFSGGQRQRICIARALALNPKVIIADEAVSALD 495 (623)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhh--CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 0134667899999963 233 3489999999999999999999999999999987544
No 208
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.82 E-value=1.3e-20 Score=156.25 Aligned_cols=144 Identities=17% Similarity=0.180 Sum_probs=107.7
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEec-ccCC---------------------CCCccccccc
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMN-LDPA---------------------VMTLPFAANI 118 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~-~~~~---------------------~~~~~~~~~~ 118 (268)
...+.+.+|+.-+|||||||||||+|..|+|..+|+.|++++.| .+.. +..++..+|+
T Consensus 23 ~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNL 102 (249)
T COG4674 23 DLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENL 102 (249)
T ss_pred eeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCeehhhccHHHHH
Confidence 34455899999999999999999999999999999999999998 4432 1123333343
Q ss_pred ch------------------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchh
Q 024413 119 DI------------------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIF 180 (268)
Q Consensus 119 ~~------------------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~ 180 (268)
++ ..+.++++++...+|.+..+.. ...||.|||||+.|.+-++++|+++++|||......
T Consensus 103 elA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~--A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd 180 (249)
T COG4674 103 ELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRL--AALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTD 180 (249)
T ss_pred HHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhh--hhhhccchhhhhhhheeeccCCcEEEecCccCCCcH
Confidence 22 2356899999999999888777 899999999999999999999999999999765443
Q ss_pred hhhhHHHHHHHHHhccCCcEEEEEEcC
Q 024413 181 TWSASGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 181 ~~~~~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
.+...-..+.+.++.. ..++|+=+|.
T Consensus 181 ~Et~~taeLl~~la~~-hsilVVEHDM 206 (249)
T COG4674 181 AETEKTAELLKSLAGK-HSILVVEHDM 206 (249)
T ss_pred HHHHHHHHHHHHHhcC-ceEEEEeccH
Confidence 3334444555555332 2333333555
No 209
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.82 E-value=1.1e-19 Score=161.53 Aligned_cols=144 Identities=13% Similarity=0.029 Sum_probs=98.1
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCc--------ccEEEEecccCCC--------------CC------c
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSR--------NIRGYVMNLDPAV--------------MT------L 112 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~--------~g~i~i~~~~~~~--------------~~------~ 112 (268)
.....+.+|++++|+|+||||||||+++|+|..+|+ +|.+.++|.+... .. .
T Consensus 19 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~ 98 (272)
T PRK13547 19 DLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQPAFAF 98 (272)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCCCCCCC
Confidence 334458999999999999999999999999999987 8999998865321 00 1
Q ss_pred ccccccch--------------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHh---------cCCCEE
Q 024413 113 PFAANIDI--------------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRA---------DHLDYV 169 (268)
Q Consensus 113 ~~~~~~~~--------------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~---------~~~~il 169 (268)
+..+++.. .....+.++++.+++...... .+..|||||+||++||++++ .+|+++
T Consensus 99 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~ll 176 (272)
T PRK13547 99 SAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGR--DVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYL 176 (272)
T ss_pred cHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcC--CcccCCHHHHHHHHHHHHHhccccccccCCCCCEE
Confidence 11111110 012245678888998765443 38899999999999999999 599999
Q ss_pred EEeCCCCcch-hhhhhHHHHHHHHHhcc-CCcEEEEEEcC
Q 024413 170 LVDTPGQIEI-FTWSASGAIITEAFAST-FPTVVTYVVDT 207 (268)
Q Consensus 170 llDePG~~~~-~~~~~~~~~i~~~~~~~-~~d~vv~vvD~ 207 (268)
|+|||+..-+ .........+ ..+... ...+++..+|.
T Consensus 177 lLDEPt~~LD~~~~~~l~~~l-~~~~~~~~~tviiisH~~ 215 (272)
T PRK13547 177 LLDEPTAALDLAHQHRLLDTV-RRLARDWNLGVLAIVHDP 215 (272)
T ss_pred EEcCccccCCHHHHHHHHHHH-HHHHHhcCCEEEEEECCH
Confidence 9999987543 3223333333 333333 34555555554
No 210
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=7.8e-20 Score=158.65 Aligned_cols=144 Identities=13% Similarity=-0.001 Sum_probs=91.5
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC----------CCc---------ccccccchh
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV----------MTL---------PFAANIDIR 121 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~----------~~~---------~~~~~~~~~ 121 (268)
.....+++|++++|+|+||||||||+++|+|+.+|++|.++++|.+... ..+ +..+++...
T Consensus 20 ~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~ 99 (234)
T cd03251 20 DISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYG 99 (234)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeeccccHHHHhhcc
Confidence 3344588999999999999999999999999999999999998864310 000 111111110
Q ss_pred ----hHHH---------HHHHHHHc--CCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHH
Q 024413 122 ----DTIR---------YKEVMKQF--NLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASG 186 (268)
Q Consensus 122 ----~~~~---------~~~~l~~~--~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~ 186 (268)
.... +.++++.+ ++..... ..+..||+||+||++||+|++.+|+++|+|||...-+.......
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l 177 (234)
T cd03251 100 RPGATREEVEEAARAANAHEFIMELPEGYDTVIG--ERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLV 177 (234)
T ss_pred CCCCCHHHHHHHHHHcCcHHHHHhcccCcceeec--cCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHH
Confidence 0111 12233333 3332222 23789999999999999999999999999999875432222223
Q ss_pred HHHHHHHhccCCcEEEEEEcC
Q 024413 187 AIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 187 ~~i~~~~~~~~~d~vv~vvD~ 207 (268)
..+...+.. ...+++..+|.
T Consensus 178 ~~~l~~~~~-~~tii~~sh~~ 197 (234)
T cd03251 178 QAALERLMK-NRTTFVIAHRL 197 (234)
T ss_pred HHHHHHhcC-CCEEEEEecCH
Confidence 333333332 33444444444
No 211
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.82 E-value=9e-20 Score=157.52 Aligned_cols=144 Identities=10% Similarity=0.028 Sum_probs=94.3
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC----------CCc---------ccccccch-
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV----------MTL---------PFAANIDI- 120 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~----------~~~---------~~~~~~~~- 120 (268)
.....+++|++++|+|+||||||||+++|+|..+|++|.+++.|.+... ..+ +..+++..
T Consensus 32 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~~nl~~~ 111 (226)
T cd03248 32 DVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYG 111 (226)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHhhhHHHHhccc
Confidence 3445589999999999999999999999999999999999998864311 000 11111110
Q ss_pred -h--hH---------HHHHHHHHHc--CCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHH
Q 024413 121 -R--DT---------IRYKEVMKQF--NLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASG 186 (268)
Q Consensus 121 -~--~~---------~~~~~~l~~~--~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~ 186 (268)
. .. ..+.++++.+ ++...... .+..|||||+||++||++++.+|+++|+|||...-+.......
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~--~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l 189 (226)
T cd03248 112 LQSCSFECVKEAAQKAHAHSFISELASGYDTEVGE--KGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQV 189 (226)
T ss_pred cCCCCHHHHHHHHHHcCcHHHHHhccccccchhhc--CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 0 00 0123456666 55544333 3889999999999999999999999999999875432222222
Q ss_pred HHHHHHHhccCCcEEEEEEcC
Q 024413 187 AIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 187 ~~i~~~~~~~~~d~vv~vvD~ 207 (268)
..+...+.. ...+++..+|.
T Consensus 190 ~~~l~~~~~-~~tii~~sh~~ 209 (226)
T cd03248 190 QQALYDWPE-RRTVLVIAHRL 209 (226)
T ss_pred HHHHHHHcC-CCEEEEEECCH
Confidence 233333333 23444544554
No 212
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=7.1e-20 Score=152.80 Aligned_cols=137 Identities=19% Similarity=0.184 Sum_probs=85.4
Q ss_pred cccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCC---cccccccchhhHHHHHHHHHHcCCCCCC
Q 024413 63 INFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT---LPFAANIDIRDTIRYKEVMKQFNLGPNG 139 (268)
Q Consensus 63 ~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 139 (268)
...+.+|++++|+|+||||||||+++|+|.+++++|.+++++.+..... ......+.. +.+...+....
T Consensus 20 ~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~--------~~q~~~~~~~~ 91 (178)
T cd03229 20 SLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGM--------VFQDFALFPHL 91 (178)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEE--------EecCCccCCCC
Confidence 3458899999999999999999999999999999999999887542110 000000000 00000011000
Q ss_pred Ccccchhh-hcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhcc-CCcEEEEEEcC
Q 024413 140 GILTSLNL-FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAST-FPTVVTYVVDT 207 (268)
Q Consensus 140 ~~~~~~~~-lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~-~~d~vv~vvD~ 207 (268)
.....+.. ||+||+||+++|+|++.+|+++|+|||...-+.........+...++.. ...+++..+|.
T Consensus 92 t~~~~l~~~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~ 161 (178)
T cd03229 92 TVLENIALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDL 161 (178)
T ss_pred CHHHheeecCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 11100111 9999999999999999999999999998854322223333333344333 23455554554
No 213
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=1.2e-19 Score=162.48 Aligned_cols=146 Identities=14% Similarity=0.052 Sum_probs=97.3
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhccc-----CcccEEEEecccCCC------------CCc---------cc
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQ-----SRNIRGYVMNLDPAV------------MTL---------PF 114 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~-----~~~g~i~i~~~~~~~------------~~~---------~~ 114 (268)
.....+.+|++++|+|+||||||||+++|+|+.+ |++|.|+++|.+... ..+ +.
T Consensus 57 ~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv 136 (285)
T PRK14254 57 DVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPKSI 136 (285)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCcCCH
Confidence 4445589999999999999999999999999986 689999998865311 000 11
Q ss_pred ccccchh---------hHHHHHHHHHHcCCCCC--CCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhh
Q 024413 115 AANIDIR---------DTIRYKEVMKQFNLGPN--GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWS 183 (268)
Q Consensus 115 ~~~~~~~---------~~~~~~~~l~~~~l~~~--~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~ 183 (268)
.+++... ...++.++++.+++... ......+..|||||+||++||+|++.+|+++|+|||...-+....
T Consensus 137 ~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~ 216 (285)
T PRK14254 137 YDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVAT 216 (285)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHH
Confidence 1111110 12245667888887532 112334789999999999999999999999999999875442222
Q ss_pred hHHHHHHHHHhccCCcEEEEEEcC
Q 024413 184 ASGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 184 ~~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
.....+++.++.. ..+|+..+|.
T Consensus 217 ~~l~~~L~~~~~~-~tiii~tH~~ 239 (285)
T PRK14254 217 SKIEDLIEELAEE-YTVVIVTHNM 239 (285)
T ss_pred HHHHHHHHHHhcC-CEEEEEeCCH
Confidence 3333344444332 4445544554
No 214
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.82 E-value=1.5e-19 Score=173.46 Aligned_cols=118 Identities=15% Similarity=0.159 Sum_probs=87.4
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccC--cccEEEEecccCCC-----------CC----------cccccc
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQS--RNIRGYVMNLDPAV-----------MT----------LPFAAN 117 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~--~~g~i~i~~~~~~~-----------~~----------~~~~~~ 117 (268)
.....+.+|++++|+||||||||||+++|+|+.+| ++|.++++|.+... .. .+..++
T Consensus 19 ~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~ 98 (500)
T TIGR02633 19 GIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAEN 98 (500)
T ss_pred ceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCCcHHHH
Confidence 34455899999999999999999999999999986 79999998754311 00 111111
Q ss_pred cch--------------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 118 IDI--------------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 118 ~~~--------------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
+.. ....++.++++.+++..... ...+.+|||||+||++||+|++.+|+++|+|||+..-+
T Consensus 99 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD 173 (500)
T TIGR02633 99 IFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNV-TRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLT 173 (500)
T ss_pred HHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcc-cCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Confidence 100 01134667889999874321 22388999999999999999999999999999987543
No 215
>PRK13409 putative ATPase RIL; Provisional
Probab=99.82 E-value=8.8e-20 Score=177.88 Aligned_cols=140 Identities=16% Similarity=0.036 Sum_probs=95.6
Q ss_pred cccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCC--------CCCcccccccch-----hhHHHHHHHHH
Q 024413 65 FKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA--------VMTLPFAANIDI-----RDTIRYKEVMK 131 (268)
Q Consensus 65 ~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~--------~~~~~~~~~~~~-----~~~~~~~~~l~ 131 (268)
.+++|++++|+|+||||||||+++|+|+.+|++|.+.+. .... ....+..+++.. .....+.++++
T Consensus 361 ~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~ 439 (590)
T PRK13409 361 EIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-LKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIK 439 (590)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-eeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHH
Confidence 368999999999999999999999999999999998764 1110 111111111111 01224567889
Q ss_pred HcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhc-cCCcEEEEEEcC
Q 024413 132 QFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS-TFPTVVTYVVDT 207 (268)
Q Consensus 132 ~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~-~~~d~vv~vvD~ 207 (268)
.+++...... .+.+|||||+||++||++++.+|+++|+|||+...+.........+++.++. ....+++..+|.
T Consensus 440 ~l~l~~~~~~--~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~ 514 (590)
T PRK13409 440 PLQLERLLDK--NVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDI 514 (590)
T ss_pred HCCCHHHHhC--CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 9999754443 4899999999999999999999999999999886443333333344444433 233445544553
No 216
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.82 E-value=8.9e-20 Score=156.97 Aligned_cols=120 Identities=11% Similarity=0.062 Sum_probs=85.3
Q ss_pred CcccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC----------CCc---------ccccccch
Q 024413 60 SSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV----------MTL---------PFAANIDI 120 (268)
Q Consensus 60 ~~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~----------~~~---------~~~~~~~~ 120 (268)
......+++|++++|+|+||||||||+++|+|...|++|.+++++.+... ..+ +..+++..
T Consensus 21 ~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~ 100 (221)
T cd03244 21 KNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDP 100 (221)
T ss_pred cceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCccccchHHHHhCc
Confidence 34445589999999999999999999999999999999999998865311 000 11111111
Q ss_pred ---hhHHHHHHHHHHcCCCCCCC---------cccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 121 ---RDTIRYKEVMKQFNLGPNGG---------ILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 121 ---~~~~~~~~~l~~~~l~~~~~---------~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
....++.+.++.+++..... ....+..||+||+||++||++++.+|+++|+|||...-+
T Consensus 101 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD 171 (221)
T cd03244 101 FGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVD 171 (221)
T ss_pred CCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCC
Confidence 11223445555555543211 112478899999999999999999999999999987543
No 217
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.82 E-value=1.1e-19 Score=174.07 Aligned_cols=147 Identities=10% Similarity=0.018 Sum_probs=101.3
Q ss_pred CcccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC-----------CCcccc-------cccc--
Q 024413 60 SSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV-----------MTLPFA-------ANID-- 119 (268)
Q Consensus 60 ~~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~-----------~~~~~~-------~~~~-- 119 (268)
......+++|++++|+|+||||||||+++|+|+.+|++|.|+++|.+... ..++.. .++.
T Consensus 265 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~ 344 (491)
T PRK10982 265 RDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIG 344 (491)
T ss_pred ceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHH
Confidence 34455689999999999999999999999999999999999998865321 001100 0000
Q ss_pred ----------------h-h---hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 120 ----------------I-R---DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 120 ----------------~-~---~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
. . ....+.++++.+++.... ....+.+||||||||++||++++.+|+++|+|||+..-+
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD 423 (491)
T PRK10982 345 FNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPG-HRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGID 423 (491)
T ss_pred HheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCC-cccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccC
Confidence 0 0 122356678888885221 234489999999999999999999999999999988544
Q ss_pred hhhhhHHHHHHHHHhccCCcEEEEEEcC
Q 024413 180 FTWSASGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 180 ~~~~~~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
.........+...+......+|+..+|.
T Consensus 424 ~~~~~~~~~~l~~l~~~~~tvi~vsHd~ 451 (491)
T PRK10982 424 VGAKFEIYQLIAELAKKDKGIIIISSEM 451 (491)
T ss_pred hhHHHHHHHHHHHHHHCCCEEEEECCCh
Confidence 2322333334444444445666666665
No 218
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.82 E-value=2.3e-19 Score=151.80 Aligned_cols=136 Identities=12% Similarity=0.086 Sum_probs=87.7
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcc--cCcccEEEEecccCCCC-------CcccccccchhhHHHHHHHHH
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHT--QSRNIRGYVMNLDPAVM-------TLPFAANIDIRDTIRYKEVMK 131 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~--~~~~g~i~i~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~ 131 (268)
.....+++|++++|+|+||||||||+++|+|+. +|++|.+++++.+.... ..+....+ .....+.+.+.
T Consensus 27 ~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~--~~~~t~~~~i~ 104 (194)
T cd03213 27 NVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDIL--HPTLTVRETLM 104 (194)
T ss_pred cceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccC--CCCCcHHHHHH
Confidence 334458999999999999999999999999999 99999999998765311 00101000 00001111111
Q ss_pred HcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcC
Q 024413 132 QFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 132 ~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
.. .....||+||+||+++|+|++.+|+++|+|||...-+.........+.+.+......+++..+|.
T Consensus 105 ~~---------~~~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~ 171 (194)
T cd03213 105 FA---------AKLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQP 171 (194)
T ss_pred HH---------HHhccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCc
Confidence 00 00117999999999999999999999999999875432222233333334433334555555554
No 219
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.82 E-value=1.3e-19 Score=149.72 Aligned_cols=104 Identities=11% Similarity=0.057 Sum_probs=75.6
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCC
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGG 140 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 140 (268)
.....+.+|++++|+|+||||||||+++|+|..++++|.+++.+... ...++....+. . ..+.+.+. +.
T Consensus 19 ~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~-i~~~~q~~~~~--~-~tv~~nl~---~~---- 87 (166)
T cd03223 19 DLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGED-LLFLPQRPYLP--L-GTLREQLI---YP---- 87 (166)
T ss_pred cCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCce-EEEECCCCccc--c-ccHHHHhh---cc----
Confidence 33445889999999999999999999999999999999999876321 11111111110 0 01111111 10
Q ss_pred cccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc
Q 024413 141 ILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE 178 (268)
Q Consensus 141 ~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~ 178 (268)
.+..||+||+||+++|+|++.+|+++|+|||...-
T Consensus 88 ---~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~L 122 (166)
T cd03223 88 ---WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSAL 122 (166)
T ss_pred ---CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCcccc
Confidence 26789999999999999999999999999998754
No 220
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.82 E-value=1.2e-19 Score=174.97 Aligned_cols=145 Identities=12% Similarity=-0.022 Sum_probs=96.5
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcc--cCcccEEEEec-----------------------ccC-------C
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHT--QSRNIRGYVMN-----------------------LDP-------A 108 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~--~~~~g~i~i~~-----------------------~~~-------~ 108 (268)
.....+.+|++++|+||||||||||+++|+|+. .|++|.|++.+ .+. .
T Consensus 18 ~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~ 97 (520)
T TIGR03269 18 NISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFW 97 (520)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccccccccccccchhhh
Confidence 344458999999999999999999999999997 69999998862 110 0
Q ss_pred -------------CCCccc-----------ccccch---------h-hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHH
Q 024413 109 -------------VMTLPF-----------AANIDI---------R-DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDE 154 (268)
Q Consensus 109 -------------~~~~~~-----------~~~~~~---------~-~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~q 154 (268)
...+++ .+++.. . ...++.++++.++|....... +.+|||||||
T Consensus 98 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LSgGq~q 175 (520)
T TIGR03269 98 NLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHI--ARDLSGGEKQ 175 (520)
T ss_pred ccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcC--cccCCHHHHH
Confidence 000000 011100 0 123567789999997544433 8999999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHH-hccCCcEEEEEEcC
Q 024413 155 VISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAF-ASTFPTVVTYVVDT 207 (268)
Q Consensus 155 r~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~-~~~~~d~vv~vvD~ 207 (268)
|++||+|++.+|+++|+|||+..-+.........+.+.+ +.....+++..+|.
T Consensus 176 rv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~ 229 (520)
T TIGR03269 176 RVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWP 229 (520)
T ss_pred HHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH
Confidence 999999999999999999998754322222222333333 22233455555554
No 221
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.82 E-value=6.7e-20 Score=159.41 Aligned_cols=138 Identities=12% Similarity=0.060 Sum_probs=99.5
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC------------------------Ccccccccch-
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM------------------------TLPFAANIDI- 120 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~------------------------~~~~~~~~~~- 120 (268)
.+...+++|.|++|||||||+|+|+|+.+|++|.|.++|...... .++...|+..
T Consensus 21 ~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG 100 (352)
T COG4148 21 LPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYG 100 (352)
T ss_pred CCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhhh
Confidence 344489999999999999999999999999999999988643211 1111222221
Q ss_pred ---hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhccC
Q 024413 121 ---RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTF 197 (268)
Q Consensus 121 ---~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~ 197 (268)
.....++.+...+|+++-.... |..||||+||||+|+|||...|+++|+|||-...+..+..+..-..+.++.+.
T Consensus 101 ~~~~~~~~fd~iv~lLGI~hLL~R~--P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~ 178 (352)
T COG4148 101 MWKSMRAQFDQLVALLGIEHLLDRY--PGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEI 178 (352)
T ss_pred hcccchHhHHHHHHHhCcHHHHhhC--CCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhc
Confidence 1345788899999999776666 99999999999999999999999999999976544333333333334444443
Q ss_pred CcEEEEEE
Q 024413 198 PTVVTYVV 205 (268)
Q Consensus 198 ~d~vv~vv 205 (268)
..=|+||-
T Consensus 179 ~IPIlYVS 186 (352)
T COG4148 179 NIPILYVS 186 (352)
T ss_pred CCCEEEEe
Confidence 44455553
No 222
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.82 E-value=1.1e-19 Score=165.65 Aligned_cols=104 Identities=16% Similarity=0.126 Sum_probs=79.9
Q ss_pred EEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC------------C------Ccccccccchh----------hHHH
Q 024413 74 VVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV------------M------TLPFAANIDIR----------DTIR 125 (268)
Q Consensus 74 iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~------------~------~~~~~~~~~~~----------~~~~ 125 (268)
|+||||||||||+++|+|+.+|++|.|+++|.+... + ..+..+++... ...+
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 589999999999999999999999999998865421 0 01111121110 0234
Q ss_pred HHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 126 YKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 126 ~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
+.++++.++|....... +..|||||+||++||+|++.+|+++|+|||...-+
T Consensus 81 ~~~~l~~~~l~~~~~~~--~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD 132 (325)
T TIGR01187 81 VLEALRLVQLEEFADRK--PHQLSGGQQQRVALARALVFKPKILLLDEPLSALD 132 (325)
T ss_pred HHHHHHHcCCcchhcCC--hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCC
Confidence 67788999997655544 89999999999999999999999999999987543
No 223
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.82 E-value=1.6e-19 Score=174.05 Aligned_cols=146 Identities=14% Similarity=0.032 Sum_probs=98.9
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEe-cccC---C-------------CCCccc---------
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVM-NLDP---A-------------VMTLPF--------- 114 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~-~~~~---~-------------~~~~~~--------- 114 (268)
...+.+++|++++|+||||||||||+++|+|+.+|++|.+++. +.+. . ...++.
T Consensus 302 ~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 381 (520)
T TIGR03269 302 NVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRT 381 (520)
T ss_pred eEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCc
Confidence 3445589999999999999999999999999999999999995 4210 0 001111
Q ss_pred -ccccch------h---hHHHHHHHHHHcCCCCCC---CcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc-hh
Q 024413 115 -AANIDI------R---DTIRYKEVMKQFNLGPNG---GILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE-IF 180 (268)
Q Consensus 115 -~~~~~~------~---~~~~~~~~l~~~~l~~~~---~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~-~~ 180 (268)
.+++.. . ...++.++++.+++.... .....+.+|||||+||++||+|++.+|+++|+|||+..- +.
T Consensus 382 v~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~ 461 (520)
T TIGR03269 382 VLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPI 461 (520)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 111110 0 112456788999996421 123448999999999999999999999999999998754 33
Q ss_pred hhhhHHHHHHHHHhcc-CCcEEEEEEcC
Q 024413 181 TWSASGAIITEAFAST-FPTVVTYVVDT 207 (268)
Q Consensus 181 ~~~~~~~~i~~~~~~~-~~d~vv~vvD~ 207 (268)
........+ ..++.. ...+|+..+|.
T Consensus 462 ~~~~l~~~l-~~l~~~~g~tvi~vsHd~ 488 (520)
T TIGR03269 462 TKVDVTHSI-LKAREEMEQTFIIVSHDM 488 (520)
T ss_pred HHHHHHHHH-HHHHHHcCcEEEEEeCCH
Confidence 333333333 333332 34566666665
No 224
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.82 E-value=1.9e-19 Score=158.02 Aligned_cols=145 Identities=12% Similarity=-0.045 Sum_probs=95.5
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhc--ccCcccEEEEecccCCCC-----------Ccc----------cccc
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCH--TQSRNIRGYVMNLDPAVM-----------TLP----------FAAN 117 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~--~~~~~g~i~i~~~~~~~~-----------~~~----------~~~~ 117 (268)
.....+++|++++|+|+||||||||+++|+|+ ++|++|.+++++.+.... ..+ ..++
T Consensus 25 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~ 104 (252)
T CHL00131 25 GLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPGVSNADF 104 (252)
T ss_pred cceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEeccccccccccHHHH
Confidence 34455899999999999999999999999998 578999999988653210 000 0011
Q ss_pred cch--h---------------hHHHHHHHHHHcCCCC-CCCcccchh-hhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc
Q 024413 118 IDI--R---------------DTIRYKEVMKQFNLGP-NGGILTSLN-LFTTKFDEVISLIERRADHLDYVLVDTPGQIE 178 (268)
Q Consensus 118 ~~~--~---------------~~~~~~~~l~~~~l~~-~~~~~~~~~-~lS~G~~qr~~ia~al~~~~~illlDePG~~~ 178 (268)
+.. . ....+.++++.+++.+ ..... +. .|||||+||++||+|++.+|+++|+|||+..-
T Consensus 105 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~L 182 (252)
T CHL00131 105 LRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRN--VNEGFSGGEKKRNEILQMALLDSELAILDETDSGL 182 (252)
T ss_pred HHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccc--cccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC
Confidence 000 0 0123456788888863 22222 55 59999999999999999999999999998754
Q ss_pred hhhhhhHHHHHHHHHhccCCcEEEEEEcC
Q 024413 179 IFTWSASGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 179 ~~~~~~~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
+.........+...+......+|+..+|.
T Consensus 183 D~~~~~~l~~~l~~~~~~g~tii~~tH~~ 211 (252)
T CHL00131 183 DIDALKIIAEGINKLMTSENSIILITHYQ 211 (252)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 32222233333333433334555555554
No 225
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=2.5e-19 Score=152.57 Aligned_cols=114 Identities=12% Similarity=0.042 Sum_probs=78.6
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhccc---CcccEEEEecccCCCCC------ccccc-ccchhhHHHHHHHHH
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQ---SRNIRGYVMNLDPAVMT------LPFAA-NIDIRDTIRYKEVMK 131 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~---~~~g~i~i~~~~~~~~~------~~~~~-~~~~~~~~~~~~~l~ 131 (268)
....+.+|++++|+|+||||||||+++|+|..+ +++|.+++++.+..... +.+.. .........+.+.+.
T Consensus 26 ~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~ 105 (202)
T cd03233 26 FSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLD 105 (202)
T ss_pred EEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHHHh
Confidence 344589999999999999999999999999998 89999999887643110 00000 000000011111111
Q ss_pred H-cCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 132 Q-FNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 132 ~-~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
. ..+. ....+..||+||+||++||+|++.+|+++|+|||...-+
T Consensus 106 ~~~~~~----~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD 150 (202)
T cd03233 106 FALRCK----GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLD 150 (202)
T ss_pred hhhhhc----cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCC
Confidence 1 0010 223478999999999999999999999999999987543
No 226
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=1.6e-19 Score=156.14 Aligned_cols=119 Identities=12% Similarity=0.047 Sum_probs=81.6
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC----------CCcc---------cccccch-
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV----------MTLP---------FAANIDI- 120 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~----------~~~~---------~~~~~~~- 120 (268)
.....+.+|++++|+||||||||||+++|+|+.+|++|.+++++.+... ...+ ..+++..
T Consensus 21 ~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~~~~~ 100 (229)
T cd03254 21 DINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLG 100 (229)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhhHHHHHHhcc
Confidence 3445589999999999999999999999999999999999998864321 0001 1111110
Q ss_pred ---hhHHHHHHHHHHcCCCCC---------CCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 121 ---RDTIRYKEVMKQFNLGPN---------GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 121 ---~~~~~~~~~l~~~~l~~~---------~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
.....+.+.++.+++... ......+..||+||+||++||++++.+|+++|+|||...-+
T Consensus 101 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD 171 (229)
T cd03254 101 RPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNID 171 (229)
T ss_pred CCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCC
Confidence 111223333333333211 01112368899999999999999999999999999987543
No 227
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=3.1e-19 Score=150.78 Aligned_cols=130 Identities=12% Similarity=0.114 Sum_probs=84.9
Q ss_pred cccccCCeEEEEEecCCCCHHHHHHHHHhcc--cCcccEEEEecccCCC------CCccccc----ccchhhHHHHHHHH
Q 024413 63 INFKRKPVIIIVVGMAGSGKTTFMHRLVCHT--QSRNIRGYVMNLDPAV------MTLPFAA----NIDIRDTIRYKEVM 130 (268)
Q Consensus 63 ~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~--~~~~g~i~i~~~~~~~------~~~~~~~----~~~~~~~~~~~~~l 130 (268)
...+++|++++|+|+||||||||+++|+|.. .+++|.+++++.+... ...+... .+++.+......
T Consensus 27 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~-- 104 (192)
T cd03232 27 SGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSA-- 104 (192)
T ss_pred EEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHHHHHHH--
Confidence 3458899999999999999999999999986 4799999998876420 0011111 111111111100
Q ss_pred HHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcC
Q 024413 131 KQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 131 ~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
. .+.|||||+||+++|+|++.+|+++|+|||...-+.........+.+.++.....+++..+|.
T Consensus 105 -~------------~~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~ 168 (192)
T cd03232 105 -L------------LRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQP 168 (192)
T ss_pred -H------------HhcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCC
Confidence 0 127999999999999999999999999999875432222223333334433334555555554
No 228
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.81 E-value=1.8e-19 Score=154.90 Aligned_cols=146 Identities=16% Similarity=0.073 Sum_probs=94.4
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC-----------C---Ccccc---------ccc
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV-----------M---TLPFA---------ANI 118 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~-----------~---~~~~~---------~~~ 118 (268)
....+++|++++|+|+||||||||+++|+|..+|++|.+++++.+... . .++.. +++
T Consensus 20 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~t~~~nl 99 (218)
T cd03290 20 INIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNATVEENI 99 (218)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCCccccccHHHHH
Confidence 344588999999999999999999999999999999999998764311 0 00101 111
Q ss_pred ch---hhHHHHHHHHHHcCCCCCC---------CcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhh-hhhH
Q 024413 119 DI---RDTIRYKEVMKQFNLGPNG---------GILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFT-WSAS 185 (268)
Q Consensus 119 ~~---~~~~~~~~~l~~~~l~~~~---------~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~-~~~~ 185 (268)
.. .......++++.+++.... .....+..||+||+||++||++++.+|+++|+|||+...+.. ....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l 179 (218)
T cd03290 100 TFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHL 179 (218)
T ss_pred hhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHH
Confidence 11 0112334455555553211 112247899999999999999999999999999998754322 2222
Q ss_pred HH-HHHHHHhccCCcEEEEEEcC
Q 024413 186 GA-IITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 186 ~~-~i~~~~~~~~~d~vv~vvD~ 207 (268)
.. .+.+.++.....+++..+|.
T Consensus 180 ~~~~ll~~~~~~~~tii~~sH~~ 202 (218)
T cd03290 180 MQEGILKFLQDDKRTLVLVTHKL 202 (218)
T ss_pred HHHHHHHHHhcCCCEEEEEeCCh
Confidence 22 14444443334555555554
No 229
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.81 E-value=1.5e-19 Score=150.13 Aligned_cols=133 Identities=11% Similarity=0.052 Sum_probs=84.0
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcc-cccccchhhHHHHHHHHHHcCCCCCCC
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLP-FAANIDIRDTIRYKEVMKQFNLGPNGG 140 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~ 140 (268)
....+.+|++++|+|+||||||||+++|+|+.+|++|.+++++.+....... ....+.. +.+...+.+ ..
T Consensus 21 ~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~--------~~q~~~~~~-~t 91 (173)
T cd03246 21 VSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY--------LPQDDELFS-GS 91 (173)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE--------ECCCCcccc-Cc
Confidence 3445889999999999999999999999999999999999988654211000 0000000 000001111 01
Q ss_pred cccchhh--hcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcC
Q 024413 141 ILTSLNL--FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 141 ~~~~~~~--lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
+.+ ||+||+||++||+|++.+|+++|+|||...-+.........+...++.....+++..+|.
T Consensus 92 ----v~~~lLS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~ 156 (173)
T cd03246 92 ----IAENILSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRP 156 (173)
T ss_pred ----HHHHCcCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 111 999999999999999999999999999875432222222233333333333444444444
No 230
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=1.9e-19 Score=158.28 Aligned_cols=146 Identities=14% Similarity=0.038 Sum_probs=95.3
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccC-----cccEEEEecccCCC------------CCc---------cc
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQS-----RNIRGYVMNLDPAV------------MTL---------PF 114 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~-----~~g~i~i~~~~~~~------------~~~---------~~ 114 (268)
.....+.+|++++|+|+||||||||+++|+|+.++ ++|.|+++|.+... ..+ +.
T Consensus 25 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv 104 (254)
T PRK14273 25 NINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFLMSI 104 (254)
T ss_pred ceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccccccCcH
Confidence 34455899999999999999999999999999987 48999998865310 000 11
Q ss_pred ccccchh-------h----HHHHHHHHHHcCCCCC--CCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhh
Q 024413 115 AANIDIR-------D----TIRYKEVMKQFNLGPN--GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFT 181 (268)
Q Consensus 115 ~~~~~~~-------~----~~~~~~~l~~~~l~~~--~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~ 181 (268)
.+++... . ...+.++++.+++... ......+..|||||+||++||++++.+|+++|+|||+..-+..
T Consensus 105 ~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~ 184 (254)
T PRK14273 105 YDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPI 184 (254)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHH
Confidence 1111110 0 1234556777776321 1223348899999999999999999999999999998754322
Q ss_pred hhhHHHHHHHHHhccCCcEEEEEEcC
Q 024413 182 WSASGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 182 ~~~~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
.......+...++. ...+|+..+|.
T Consensus 185 ~~~~l~~~l~~~~~-~~tvii~sH~~ 209 (254)
T PRK14273 185 STGKIEELIINLKE-SYTIIIVTHNM 209 (254)
T ss_pred HHHHHHHHHHHHhc-CCEEEEEeCCH
Confidence 22233333333432 23444444544
No 231
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.81 E-value=2.2e-19 Score=159.23 Aligned_cols=146 Identities=12% Similarity=0.021 Sum_probs=95.9
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccC-----cccEEEEecccCCC------------CCcc---------c
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQS-----RNIRGYVMNLDPAV------------MTLP---------F 114 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~-----~~g~i~i~~~~~~~------------~~~~---------~ 114 (268)
.....+++|++++|+|+||||||||+++|+|+..+ ++|.|+++|.+... ..++ .
T Consensus 37 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv 116 (267)
T PRK14235 37 DVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPKSI 116 (267)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCCCCcH
Confidence 33445899999999999999999999999999874 89999998865421 0001 0
Q ss_pred ccccch----h----h----HHHHHHHHHHcCCCCC--CCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchh
Q 024413 115 AANIDI----R----D----TIRYKEVMKQFNLGPN--GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIF 180 (268)
Q Consensus 115 ~~~~~~----~----~----~~~~~~~l~~~~l~~~--~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~ 180 (268)
.+++.. . . ...+.++++.+++... ......+..|||||+||++||++++.+|+++|+|||...-+.
T Consensus 117 ~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~ 196 (267)
T PRK14235 117 YENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDP 196 (267)
T ss_pred HHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCH
Confidence 111110 0 0 1234567888888531 122234789999999999999999999999999999875432
Q ss_pred hhhhHHHHHHHHHhccCCcEEEEEEcC
Q 024413 181 TWSASGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 181 ~~~~~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
........+.+.+.. ...+++..+|.
T Consensus 197 ~~~~~l~~~L~~l~~-~~tiiivtH~~ 222 (267)
T PRK14235 197 IATAKVEELIDELRQ-NYTIVIVTHSM 222 (267)
T ss_pred HHHHHHHHHHHHHhc-CCeEEEEEcCH
Confidence 222222333333333 23444544554
No 232
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=2.2e-19 Score=158.32 Aligned_cols=146 Identities=12% Similarity=0.021 Sum_probs=95.8
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccC-----cccEEEEecccCCC------------CCc---------cc
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQS-----RNIRGYVMNLDPAV------------MTL---------PF 114 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~-----~~g~i~i~~~~~~~------------~~~---------~~ 114 (268)
.....+.+|++++|+|+||||||||+++|+|+.++ ++|.|+++|.+... ..+ +.
T Consensus 30 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv 109 (258)
T PRK14268 30 NVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSI 109 (258)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccCcccH
Confidence 33445899999999999999999999999999874 79999998865311 000 01
Q ss_pred ccccchh----------hHHHHHHHHHHcCCCCC--CCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhh
Q 024413 115 AANIDIR----------DTIRYKEVMKQFNLGPN--GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTW 182 (268)
Q Consensus 115 ~~~~~~~----------~~~~~~~~l~~~~l~~~--~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~ 182 (268)
.+++... ....+.++++.+++... ......+..|||||+||++||+|++.+|+++|+|||+..-+...
T Consensus 110 ~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~ 189 (258)
T PRK14268 110 YDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPIS 189 (258)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHH
Confidence 1111110 01235567888887421 11233488999999999999999999999999999987543222
Q ss_pred hhHHHHHHHHHhccCCcEEEEEEcC
Q 024413 183 SASGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 183 ~~~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
......+.+.++. ...+|+..+|.
T Consensus 190 ~~~l~~~l~~l~~-~~tiiivsH~~ 213 (258)
T PRK14268 190 TARIEDLIMNLKK-DYTIVIVTHNM 213 (258)
T ss_pred HHHHHHHHHHHhh-CCEEEEEECCH
Confidence 2223333333332 24445544554
No 233
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.81 E-value=1.2e-19 Score=178.48 Aligned_cols=133 Identities=11% Similarity=0.055 Sum_probs=92.5
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccC------------------------CCCCc----
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP------------------------AVMTL---- 112 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~------------------------~~~~~---- 112 (268)
...+.+.+|++++|+|+||||||||+++|+|+++|++|.+.+.+... ....+
T Consensus 34 ~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~ 113 (623)
T PRK10261 34 NLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEP 113 (623)
T ss_pred eeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEEEEeCc
Confidence 34455899999999999999999999999999999999998865311 00000
Q ss_pred --------ccccccch--h---------hHHHHHHHHHHcCCCCC-CCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEe
Q 024413 113 --------PFAANIDI--R---------DTIRYKEVMKQFNLGPN-GGILTSLNLFTTKFDEVISLIERRADHLDYVLVD 172 (268)
Q Consensus 113 --------~~~~~~~~--~---------~~~~~~~~l~~~~l~~~-~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlD 172 (268)
+..+++.. + ...++.++++.++|... .....++.+|||||+||++||+|++.+|+++|+|
T Consensus 114 ~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllD 193 (623)
T PRK10261 114 MTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIAD 193 (623)
T ss_pred hhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 11111110 0 12356678899999642 1233448999999999999999999999999999
Q ss_pred CCCCcchhhhhhHHHHHHHHH
Q 024413 173 TPGQIEIFTWSASGAIITEAF 193 (268)
Q Consensus 173 ePG~~~~~~~~~~~~~i~~~~ 193 (268)
||+..-+.........+.+.+
T Consensus 194 EPt~~LD~~~~~~l~~ll~~l 214 (623)
T PRK10261 194 EPTTALDVTIQAQILQLIKVL 214 (623)
T ss_pred CCCCccCHHHHHHHHHHHHHH
Confidence 998754433333333344443
No 234
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.81 E-value=2.5e-19 Score=153.26 Aligned_cols=140 Identities=10% Similarity=0.009 Sum_probs=104.5
Q ss_pred CcccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC------CCccccc----ccch---------
Q 024413 60 SSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV------MTLPFAA----NIDI--------- 120 (268)
Q Consensus 60 ~~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~------~~~~~~~----~~~~--------- 120 (268)
....+.+++|++.+++|+|||||||++++|+|++.|++|.|.|+|.+... .++|-.. .++.
T Consensus 19 ~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k~tv~dql~yla~ 98 (300)
T COG4152 19 DNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAE 98 (300)
T ss_pred cceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhhccCccCcHHHHHHHHHH
Confidence 34455689999999999999999999999999999999999999976532 2222211 2221
Q ss_pred -------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCc-chhhhhhHHHHHHHH
Q 024413 121 -------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQI-EIFTWSASGAIITEA 192 (268)
Q Consensus 121 -------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~-~~~~~~~~~~~i~~~ 192 (268)
.-..++..+++.+++..+...+ +++||.|++|++.+..+++++|+++|||||.-. ||.+ .......+..
T Consensus 99 LkGm~~~e~~~~~~~wLer~~i~~~~~~k--Ik~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN-~elLk~~I~~ 175 (300)
T COG4152 99 LKGMPKAEIQKKLQAWLERLEIVGKKTKK--IKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVN-VELLKDAIFE 175 (300)
T ss_pred hcCCcHHHHHHHHHHHHHhccccccccch--HHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhh-HHHHHHHHHH
Confidence 1234677899999999888777 999999999999999999999999999999664 5533 3333333333
Q ss_pred HhccCCcEEE
Q 024413 193 FASTFPTVVT 202 (268)
Q Consensus 193 ~~~~~~d~vv 202 (268)
++...+.+++
T Consensus 176 lk~~GatIif 185 (300)
T COG4152 176 LKEEGATIIF 185 (300)
T ss_pred HHhcCCEEEE
Confidence 4444344433
No 235
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=2e-19 Score=173.77 Aligned_cols=117 Identities=14% Similarity=0.074 Sum_probs=86.2
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccC---------CCCCcccccccch-----------
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP---------AVMTLPFAANIDI----------- 120 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~---------~~~~~~~~~~~~~----------- 120 (268)
.....+.+|++++|+||||||||||+++|+|..+|++|.+++.+... .....+..+++..
T Consensus 19 ~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~ 98 (530)
T PRK15064 19 NISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQE 98 (530)
T ss_pred CCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHH
Confidence 44556899999999999999999999999999999999998875321 0111111111100
Q ss_pred -------------------------------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEE
Q 024413 121 -------------------------------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYV 169 (268)
Q Consensus 121 -------------------------------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~il 169 (268)
....++.++++.+++..... ...+..|||||+||++||++++.+|+++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~~LSgGq~qrv~lA~aL~~~p~lL 177 (530)
T PRK15064 99 RDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQH-YGLMSEVAPGWKLRVLLAQALFSNPDIL 177 (530)
T ss_pred HHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHh-cCchhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 01234667888898864221 1238899999999999999999999999
Q ss_pred EEeCCCCcc
Q 024413 170 LVDTPGQIE 178 (268)
Q Consensus 170 llDePG~~~ 178 (268)
|+|||+..-
T Consensus 178 lLDEPt~~L 186 (530)
T PRK15064 178 LLDEPTNNL 186 (530)
T ss_pred EEcCCCccc
Confidence 999998754
No 236
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=3.2e-19 Score=156.16 Aligned_cols=118 Identities=13% Similarity=0.095 Sum_probs=85.8
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhccc---CcccEEEEecccCCCC----------Cc---------ccccccc
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQ---SRNIRGYVMNLDPAVM----------TL---------PFAANID 119 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~---~~~g~i~i~~~~~~~~----------~~---------~~~~~~~ 119 (268)
....+.+|++++|+|+||||||||+++|+|+.. |++|.|+++|.+.... .+ +..+++.
T Consensus 21 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~~tv~eni~ 100 (246)
T PRK14269 21 INMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKSIYENIS 100 (246)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCccccccHHHHhh
Confidence 344588999999999999999999999999974 6899999988754210 00 1111211
Q ss_pred hh------------hHHHHHHHHHHcCCCCC--CCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 120 IR------------DTIRYKEVMKQFNLGPN--GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 120 ~~------------~~~~~~~~l~~~~l~~~--~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
.. ...++.++++.+++.+. ......+..||+||+||+++|+|++.+|+++|+|||...-+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD 174 (246)
T PRK14269 101 YAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALD 174 (246)
T ss_pred hHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 10 11235667888888532 11223378899999999999999999999999999987543
No 237
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.81 E-value=3.4e-19 Score=155.89 Aligned_cols=145 Identities=10% Similarity=-0.063 Sum_probs=94.5
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcc--cCcccEEEEecccCCC--------CCcc---ccc-----------
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHT--QSRNIRGYVMNLDPAV--------MTLP---FAA----------- 116 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~--~~~~g~i~i~~~~~~~--------~~~~---~~~----------- 116 (268)
.....+++|++++|+|+||||||||+++|+|.. +|++|.++++|.+... ..+. ...
T Consensus 19 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~ 98 (248)
T PRK09580 19 GLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGVSNQFF 98 (248)
T ss_pred cceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccchhHHHH
Confidence 334458899999999999999999999999995 6999999998865321 0000 000
Q ss_pred ------ccch------hh----HHHHHHHHHHcCCCCC-CCcccch-hhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc
Q 024413 117 ------NIDI------RD----TIRYKEVMKQFNLGPN-GGILTSL-NLFTTKFDEVISLIERRADHLDYVLVDTPGQIE 178 (268)
Q Consensus 117 ------~~~~------~~----~~~~~~~l~~~~l~~~-~~~~~~~-~~lS~G~~qr~~ia~al~~~~~illlDePG~~~ 178 (268)
++.. .+ ...+.++++.+++... .... + ..|||||+||++||+|++.+|+++|+|||+..-
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~~LS~G~~qrv~laral~~~p~illLDEPt~~L 176 (248)
T PRK09580 99 LQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRS--VNVGFSGGEKKRNDILQMAVLEPELCILDESDSGL 176 (248)
T ss_pred HHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccC--CCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccC
Confidence 0000 00 1223456677777421 1211 4 379999999999999999999999999998754
Q ss_pred hhhhhhHHHHHHHHHhccCCcEEEEEEcC
Q 024413 179 IFTWSASGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 179 ~~~~~~~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
+.........+...++.....+|+..+|.
T Consensus 177 D~~~~~~l~~~l~~l~~~~~tiii~sH~~ 205 (248)
T PRK09580 177 DIDALKIVADGVNSLRDGKRSFIIVTHYQ 205 (248)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 42222333333344443334555555654
No 238
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.81 E-value=1.6e-19 Score=174.29 Aligned_cols=118 Identities=12% Similarity=0.077 Sum_probs=85.6
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCC---------CCCc---------ccccccchh-
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA---------VMTL---------PFAANIDIR- 121 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~---------~~~~---------~~~~~~~~~- 121 (268)
.....+++|++++|+||+|||||||++.|+|+++|++|.|.++|.+.. ...+ +..+|+...
T Consensus 353 ~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~ 432 (529)
T TIGR02868 353 GVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNLRLGR 432 (529)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccccHHHHHhccC
Confidence 334458999999999999999999999999999999999999986532 1111 222233221
Q ss_pred ---hHHHHHHHHHHcCCCCCC-----Ccc----cchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc
Q 024413 122 ---DTIRYKEVMKQFNLGPNG-----GIL----TSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE 178 (268)
Q Consensus 122 ---~~~~~~~~l~~~~l~~~~-----~~~----~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~ 178 (268)
...++.+.++..++.+.- +.. ..-..||||||||++||||+..+|+++|+|||+..-
T Consensus 433 ~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaL 501 (529)
T TIGR02868 433 PDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHL 501 (529)
T ss_pred CCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 234455666666654210 111 112459999999999999999999999999998754
No 239
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=3.3e-19 Score=158.22 Aligned_cols=146 Identities=12% Similarity=0.013 Sum_probs=94.8
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhccc-----CcccEEEEecccCCC------------CCcc---------c
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQ-----SRNIRGYVMNLDPAV------------MTLP---------F 114 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~-----~~~g~i~i~~~~~~~------------~~~~---------~ 114 (268)
.....+++|++++|+|+||||||||+++|+|+.+ |++|.++++|.+... ..++ .
T Consensus 31 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv 110 (269)
T PRK14259 31 NVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSI 110 (269)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCccchhhH
Confidence 3345589999999999999999999999999987 589999998865310 0011 1
Q ss_pred ccccch----h-----hHHHHHHHHHHcCCCCC--CCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhh
Q 024413 115 AANIDI----R-----DTIRYKEVMKQFNLGPN--GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWS 183 (268)
Q Consensus 115 ~~~~~~----~-----~~~~~~~~l~~~~l~~~--~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~ 183 (268)
.+++.. . ....+.++++.+++... ......+..||+||+||++||+|++.+|+++|+|||+...+....
T Consensus 111 ~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~ 190 (269)
T PRK14259 111 YENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPIST 190 (269)
T ss_pred HHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHH
Confidence 111110 0 01234556777776421 122334789999999999999999999999999999875432222
Q ss_pred hHHHHHHHHHhccCCcEEEEEEcC
Q 024413 184 ASGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 184 ~~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
.....+...++. ...+|+..+|.
T Consensus 191 ~~l~~~l~~~~~-~~tiiivtH~~ 213 (269)
T PRK14259 191 LKIEETMHELKK-NFTIVIVTHNM 213 (269)
T ss_pred HHHHHHHHHHhc-CCEEEEEeCCH
Confidence 222233333333 23444444543
No 240
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.81 E-value=2.6e-19 Score=158.08 Aligned_cols=117 Identities=14% Similarity=0.060 Sum_probs=84.9
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhccc-----CcccEEEEecccCCCC------------Cc---------ccc
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQ-----SRNIRGYVMNLDPAVM------------TL---------PFA 115 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~-----~~~g~i~i~~~~~~~~------------~~---------~~~ 115 (268)
....+++|++++|+|+||||||||+++|+|+.. |++|.++++|.+.... .+ +..
T Consensus 32 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 111 (260)
T PRK10744 32 INLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIY 111 (260)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccCcCcHH
Confidence 344589999999999999999999999999986 4799999988654210 00 111
Q ss_pred cccch--h---------hHHHHHHHHHHcCCCCC--CCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc
Q 024413 116 ANIDI--R---------DTIRYKEVMKQFNLGPN--GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE 178 (268)
Q Consensus 116 ~~~~~--~---------~~~~~~~~l~~~~l~~~--~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~ 178 (268)
+++.. . ...++.++++.+++... ......+..|||||+||++||+|++.+|+++|+|||+..-
T Consensus 112 ~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~L 187 (260)
T PRK10744 112 DNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSAL 187 (260)
T ss_pred HHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccC
Confidence 11110 0 01245667888887431 1122347889999999999999999999999999998754
No 241
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.81 E-value=3e-19 Score=155.42 Aligned_cols=119 Identities=14% Similarity=0.052 Sum_probs=80.4
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC----------CCc---------ccccccch-
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV----------MTL---------PFAANIDI- 120 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~----------~~~---------~~~~~~~~- 120 (268)
.....+++|++++|+|+||||||||+++|+|..+|++|.++++|.+... ..+ +..+++..
T Consensus 21 ~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~ 100 (238)
T cd03249 21 GLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYG 100 (238)
T ss_pred ceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhhhhHHHHhhcc
Confidence 3445589999999999999999999999999999999999998865320 000 11111110
Q ss_pred ---hhHHHHHHHHHHcCCCC---------CCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 121 ---RDTIRYKEVMKQFNLGP---------NGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 121 ---~~~~~~~~~l~~~~l~~---------~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
.....+.+.++.+++.. .......+..|||||+||+++|++++.+|+++|+|||...-+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD 171 (238)
T cd03249 101 KPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALD 171 (238)
T ss_pred CCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCC
Confidence 01111222222222211 001122368899999999999999999999999999987543
No 242
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.81 E-value=2.5e-19 Score=152.84 Aligned_cols=112 Identities=13% Similarity=0.118 Sum_probs=79.5
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC----------CCc---------ccccccchh
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV----------MTL---------PFAANIDIR 121 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~----------~~~---------~~~~~~~~~ 121 (268)
.....+++|++++|+|+||||||||+++|+|+.++++|.+.+++.+... ..+ +..+++...
T Consensus 26 ~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~~l~~~ 105 (207)
T cd03369 26 NVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPF 105 (207)
T ss_pred CceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccCccHHHHhccc
Confidence 3445589999999999999999999999999999999999998865310 000 111111110
Q ss_pred hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc
Q 024413 122 DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE 178 (268)
Q Consensus 122 ~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~ 178 (268)
......++.+.+++ ...+..||+||+||+++|++++.+|+++|+|||...-
T Consensus 106 ~~~~~~~~~~~l~~------~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~L 156 (207)
T cd03369 106 DEYSDEEIYGALRV------SEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASI 156 (207)
T ss_pred CCCCHHHHHHHhhc------cCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccC
Confidence 00011222333332 2237889999999999999999999999999998754
No 243
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.81 E-value=3.2e-19 Score=173.33 Aligned_cols=117 Identities=13% Similarity=0.029 Sum_probs=85.6
Q ss_pred CcccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEeccc---------CCCCCcccccccch--h-------
Q 024413 60 SSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLD---------PAVMTLPFAANIDI--R------- 121 (268)
Q Consensus 60 ~~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~---------~~~~~~~~~~~~~~--~------- 121 (268)
....+.+.+|++++|+||||||||||+++|+|..+|++|.|++.+.. ......+..+++.. .
T Consensus 24 ~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~ 103 (556)
T PRK11819 24 KDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALD 103 (556)
T ss_pred eCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHH
Confidence 34455689999999999999999999999999999999998775321 11111122222110 0
Q ss_pred -------------------------------------hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhc
Q 024413 122 -------------------------------------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRAD 164 (268)
Q Consensus 122 -------------------------------------~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~ 164 (268)
...++.++++.+++.. . ...++.||||||||++||++++.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~--~~~~~~LSgGqkqrv~la~al~~ 180 (556)
T PRK11819 104 RFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP-W--DAKVTKLSGGERRRVALCRLLLE 180 (556)
T ss_pred HHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc-c--cCchhhcCHHHHHHHHHHHHHhC
Confidence 0123555777888842 2 33489999999999999999999
Q ss_pred CCCEEEEeCCCCcch
Q 024413 165 HLDYVLVDTPGQIEI 179 (268)
Q Consensus 165 ~~~illlDePG~~~~ 179 (268)
+|+++|+|||+..-+
T Consensus 181 ~p~vlLLDEPt~~LD 195 (556)
T PRK11819 181 KPDMLLLDEPTNHLD 195 (556)
T ss_pred CCCEEEEcCCCCcCC
Confidence 999999999987543
No 244
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.81 E-value=2.5e-19 Score=149.45 Aligned_cols=109 Identities=15% Similarity=0.078 Sum_probs=75.1
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCc
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGI 141 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 141 (268)
....+++|++++|+|+||||||||+++|+|+.++++|.+.+++.+...........+.. +.+...+.+ ...
T Consensus 21 i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~--------~~q~~~~~~-~tv 91 (178)
T cd03247 21 LSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISV--------LNQRPYLFD-TTL 91 (178)
T ss_pred EEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEE--------EccCCeeec-ccH
Confidence 34458999999999999999999999999999999999999886432100000000000 000000000 000
Q ss_pred ccc-hhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 142 LTS-LNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 142 ~~~-~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
... +..||+||+||++||+|++.+|+++|+|||...-+
T Consensus 92 ~~~i~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD 130 (178)
T cd03247 92 RNNLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLD 130 (178)
T ss_pred HHhhcccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCC
Confidence 000 56799999999999999999999999999987543
No 245
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.81 E-value=4e-19 Score=170.21 Aligned_cols=142 Identities=14% Similarity=0.080 Sum_probs=103.2
Q ss_pred CcccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEeccc---CCCCCcccccccch----------------
Q 024413 60 SSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLD---PAVMTLPFAANIDI---------------- 120 (268)
Q Consensus 60 ~~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~---~~~~~~~~~~~~~~---------------- 120 (268)
......+.+|.+++|||+||+||||||++|+|...|+.|.|.+...- ...+..+.....++
T Consensus 20 ~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~ 99 (530)
T COG0488 20 ENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLA 99 (530)
T ss_pred cCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHH
Confidence 34455589999999999999999999999999999999998876531 11111111110000
Q ss_pred ------------------------------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEE
Q 024413 121 ------------------------------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVL 170 (268)
Q Consensus 121 ------------------------------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~ill 170 (268)
....++..++.-+++... . ..++.||||||.|+++|++|+.+|+++|
T Consensus 100 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~--~~~~~LSGG~r~Rv~LA~aL~~~pDlLL 176 (530)
T COG0488 100 ELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-D--RPVSSLSGGWRRRVALARALLEEPDLLL 176 (530)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-c--CchhhcCHHHHHHHHHHHHHhcCCCEEE
Confidence 001345556677777765 3 3389999999999999999999999999
Q ss_pred EeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcC
Q 024413 171 VDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 171 lDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
||||+-+.+ .....|+..++......+||+.||-
T Consensus 177 LDEPTNHLD---~~~i~WLe~~L~~~~gtviiVSHDR 210 (530)
T COG0488 177 LDEPTNHLD---LESIEWLEDYLKRYPGTVIVVSHDR 210 (530)
T ss_pred EcCCCcccC---HHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 999998653 3456688888876555677777775
No 246
>PRK13409 putative ATPase RIL; Provisional
Probab=99.81 E-value=2.3e-19 Score=174.95 Aligned_cols=139 Identities=13% Similarity=0.072 Sum_probs=95.7
Q ss_pred cccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEE-----------EecccCCC----------------CCcccccc
Q 024413 65 FKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGY-----------VMNLDPAV----------------MTLPFAAN 117 (268)
Q Consensus 65 ~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~-----------i~~~~~~~----------------~~~~~~~~ 117 (268)
.+++|++++|+||||||||||+++|+|.++|+.|.+. +.|.+... ......+.
T Consensus 95 ~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~q~~~~~p~ 174 (590)
T PRK13409 95 IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPK 174 (590)
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeecccchhhhhh
Confidence 4889999999999999999999999999999999997 65543210 00001000
Q ss_pred c---chh-------hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHH
Q 024413 118 I---DIR-------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGA 187 (268)
Q Consensus 118 ~---~~~-------~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~ 187 (268)
+ ... ....+.++++.++|....... +..|||||+||++||++++.+|+++|+|||+...+........
T Consensus 175 ~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~--~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~ 252 (590)
T PRK13409 175 VFKGKVRELLKKVDERGKLDEVVERLGLENILDRD--ISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVA 252 (590)
T ss_pred hhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCC--hhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHH
Confidence 0 111 123567889999997554444 8999999999999999999999999999998754423223333
Q ss_pred HHHHHHhccCCcEEEEEEc
Q 024413 188 IITEAFASTFPTVVTYVVD 206 (268)
Q Consensus 188 ~i~~~~~~~~~d~vv~vvD 206 (268)
.+++.++. ...+|+..||
T Consensus 253 ~~i~~l~~-g~tvIivsHd 270 (590)
T PRK13409 253 RLIRELAE-GKYVLVVEHD 270 (590)
T ss_pred HHHHHHHC-CCEEEEEeCC
Confidence 33344433 3334444444
No 247
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.81 E-value=2e-19 Score=173.80 Aligned_cols=119 Identities=8% Similarity=-0.015 Sum_probs=87.6
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccC-----cccEEEEecccCCC--------------CCcccccc--c-
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQS-----RNIRGYVMNLDPAV--------------MTLPFAAN--I- 118 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~-----~~g~i~i~~~~~~~--------------~~~~~~~~--~- 118 (268)
...+.+.+|++++|+||||||||||+++|+|+++| ++|.++++|.++.. ..+++... +
T Consensus 27 ~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~ 106 (529)
T PRK15134 27 DVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLN 106 (529)
T ss_pred ceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCchhhcC
Confidence 34445889999999999999999999999999986 78999998765311 00111100 0
Q ss_pred ---c--------------h---hhHHHHHHHHHHcCCCCCC-CcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCc
Q 024413 119 ---D--------------I---RDTIRYKEVMKQFNLGPNG-GILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQI 177 (268)
Q Consensus 119 ---~--------------~---~~~~~~~~~l~~~~l~~~~-~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~ 177 (268)
. . ....++.++++.++|.... .....+.+|||||+||++||+|++.+|+++|+|||+..
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~ 186 (529)
T PRK15134 107 PLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTA 186 (529)
T ss_pred chhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCc
Confidence 0 0 0123466788999996421 12334899999999999999999999999999999875
Q ss_pred ch
Q 024413 178 EI 179 (268)
Q Consensus 178 ~~ 179 (268)
-+
T Consensus 187 LD 188 (529)
T PRK15134 187 LD 188 (529)
T ss_pred cC
Confidence 43
No 248
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.80 E-value=5.4e-19 Score=150.43 Aligned_cols=119 Identities=23% Similarity=0.179 Sum_probs=81.2
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecc------cCCCCCcccccccchh---hHHHHHHHHH
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNL------DPAVMTLPFAANIDIR---DTIRYKEVMK 131 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~------~~~~~~~~~~~~~~~~---~~~~~~~~l~ 131 (268)
.....+++|++++|+|+||||||||+++|+|+.+|++|.++++|. ++.....+..+++... ......+.++
T Consensus 23 ~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~~~~~ 102 (204)
T cd03250 23 DINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIK 102 (204)
T ss_pred eeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhccCcHHHHhccCCCcCHHHHHHHHH
Confidence 344558999999999999999999999999999999999988762 1111111222222211 1112233333
Q ss_pred HcCCCC---------CCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 132 QFNLGP---------NGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 132 ~~~l~~---------~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
.+++.. .......+..||+||+||++||++++.+|+++|+|||+..-+
T Consensus 103 ~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD 159 (204)
T cd03250 103 ACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVD 159 (204)
T ss_pred HcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCC
Confidence 333321 111123367899999999999999999999999999987543
No 249
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=3.6e-19 Score=175.36 Aligned_cols=118 Identities=14% Similarity=0.081 Sum_probs=86.9
Q ss_pred CcccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCC---CC-----Cccccccc----------c--
Q 024413 60 SSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA---VM-----TLPFAANI----------D-- 119 (268)
Q Consensus 60 ~~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~---~~-----~~~~~~~~----------~-- 119 (268)
....+.+.+|++++|+|+||||||||+++|+|...|++|.|++.+.... .. ..+....+ .
T Consensus 18 ~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~~~~~~v~~~~~~~~~l~~~ 97 (638)
T PRK10636 18 DNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPALEYVIDGDREYRQLEAQ 97 (638)
T ss_pred cCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCHHHHHHHhhHHHHHHHHH
Confidence 3445568999999999999999999999999999999999998764210 00 00000000 0
Q ss_pred ---------------h----------hhHHHHHHHHHHcCCCC-CCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeC
Q 024413 120 ---------------I----------RDTIRYKEVMKQFNLGP-NGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDT 173 (268)
Q Consensus 120 ---------------~----------~~~~~~~~~l~~~~l~~-~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDe 173 (268)
. ....++.++++.+++.. .... .+..|||||+||++||++++.+|+++||||
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~--~~~~LSgGerqRv~LA~aL~~~P~lLLLDE 175 (638)
T PRK10636 98 LHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLER--PVSDFSGGWRMRLNLAQALICRSDLLLLDE 175 (638)
T ss_pred HHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcC--chhhcCHHHHHHHHHHHHHccCCCEEEEcC
Confidence 0 00124566788888863 3333 389999999999999999999999999999
Q ss_pred CCCcch
Q 024413 174 PGQIEI 179 (268)
Q Consensus 174 PG~~~~ 179 (268)
|+...+
T Consensus 176 Ptn~LD 181 (638)
T PRK10636 176 PTNHLD 181 (638)
T ss_pred CCCcCC
Confidence 988654
No 250
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.80 E-value=3.8e-19 Score=170.31 Aligned_cols=146 Identities=10% Similarity=-0.003 Sum_probs=99.5
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccC-cccEEEEecccCCC-----------CCcccc------------c
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQS-RNIRGYVMNLDPAV-----------MTLPFA------------A 116 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~-~~g~i~i~~~~~~~-----------~~~~~~------------~ 116 (268)
.....+++|++++|+||||||||||+++|+|..++ ++|.++++|.+... ..++.. .
T Consensus 278 ~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~ 357 (490)
T PRK10938 278 NLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRN 357 (490)
T ss_pred eceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHH
Confidence 34455899999999999999999999999998765 68999998854210 000100 0
Q ss_pred ccc--------h------hhHHHHHHHHHHcCCCC-CCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhh
Q 024413 117 NID--------I------RDTIRYKEVMKQFNLGP-NGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFT 181 (268)
Q Consensus 117 ~~~--------~------~~~~~~~~~l~~~~l~~-~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~ 181 (268)
.+. . .....+.++++.+++.. ..... +.+||||||||++||+|++.+|+++|+|||+..-+..
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~ 435 (490)
T PRK10938 358 VILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAP--FHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPL 435 (490)
T ss_pred HHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCc--hhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHH
Confidence 000 0 01234677889999975 44433 8999999999999999999999999999998754322
Q ss_pred hhhHHHHHHHHHhccCC-cEEEEEEcCC
Q 024413 182 WSASGAIITEAFASTFP-TVVTYVVDTP 208 (268)
Q Consensus 182 ~~~~~~~i~~~~~~~~~-d~vv~vvD~~ 208 (268)
.......+...++.... .+|+..+|..
T Consensus 436 ~~~~l~~~L~~l~~~~~~tviivsHd~~ 463 (490)
T PRK10938 436 NRQLVRRFVDVLISEGETQLLFVSHHAE 463 (490)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEecchh
Confidence 22333333334433333 3666666763
No 251
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=2.4e-19 Score=155.73 Aligned_cols=118 Identities=13% Similarity=0.007 Sum_probs=79.7
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC----------CCc---------ccccccch--
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV----------MTL---------PFAANIDI-- 120 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~----------~~~---------~~~~~~~~-- 120 (268)
....+.+|++++|+|+||||||||+++|+|+.++++|.+++++.+... ..+ +..+++..
T Consensus 20 i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~ 99 (236)
T cd03253 20 VSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGR 99 (236)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhcchHHHHHhhcC
Confidence 344588999999999999999999999999999999999998865321 000 11111110
Q ss_pred --hhHHHHHHHHHHcCCCCC---------CCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 121 --RDTIRYKEVMKQFNLGPN---------GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 121 --~~~~~~~~~l~~~~l~~~---------~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
.....+.+.++..++... ......+..||+||+||++||++++.+|+++|+|||...-+
T Consensus 100 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD 169 (236)
T cd03253 100 PDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALD 169 (236)
T ss_pred CCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 001112222222222110 01112267899999999999999999999999999987543
No 252
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=4.3e-19 Score=147.19 Aligned_cols=106 Identities=16% Similarity=0.124 Sum_probs=74.1
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCc-ccccccchhhHHHHHHHHHHcCCCCCC
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTL-PFAANIDIRDTIRYKEVMKQFNLGPNG 139 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~ 139 (268)
.....+++|++++|+||||||||||+++|+|+.+|++|.+++++.+...... .....+.. +.+...+.+ .
T Consensus 20 ~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~--------~~~~~~~~~-~ 90 (171)
T cd03228 20 DVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY--------VPQDPFLFS-G 90 (171)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE--------EcCCchhcc-c
Confidence 3445589999999999999999999999999999999999998865421100 00000000 000000000 0
Q ss_pred Ccccchhh--hcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 140 GILTSLNL--FTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 140 ~~~~~~~~--lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
. +.+ ||+||+||+++|++++.+|+++|+|||...-+
T Consensus 91 t----~~e~lLS~G~~~rl~la~al~~~p~llllDEP~~gLD 128 (171)
T cd03228 91 T----IRENILSGGQRQRIAIARALLRDPPILILDEATSALD 128 (171)
T ss_pred h----HHHHhhCHHHHHHHHHHHHHhcCCCEEEEECCCcCCC
Confidence 0 111 99999999999999999999999999987543
No 253
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=5.7e-19 Score=154.94 Aligned_cols=144 Identities=15% Similarity=0.090 Sum_probs=95.3
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhccc-----CcccEEEEecccCCCC------------Cc---------ccc
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQ-----SRNIRGYVMNLDPAVM------------TL---------PFA 115 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~-----~~~g~i~i~~~~~~~~------------~~---------~~~ 115 (268)
....+.+|++++|+|+||||||||+++|+|..+ +++|.++++|.+.... .+ +..
T Consensus 23 ~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 102 (251)
T PRK14251 23 ISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVY 102 (251)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCccCCCcHH
Confidence 344589999999999999999999999999986 4799999988754210 00 111
Q ss_pred cccchh-------h----HHHHHHHHHHcCCCCC--CCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc-hhh
Q 024413 116 ANIDIR-------D----TIRYKEVMKQFNLGPN--GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE-IFT 181 (268)
Q Consensus 116 ~~~~~~-------~----~~~~~~~l~~~~l~~~--~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~-~~~ 181 (268)
+++... . ...+.++++.+++... ......+..|||||+||++||+|++.+|+++|+|||...- +.+
T Consensus 103 enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~ 182 (251)
T PRK14251 103 DNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPIS 182 (251)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHH
Confidence 111110 0 1234567777887421 1223348899999999999999999999999999998754 333
Q ss_pred hhhHHHHHHHHHhccCCcEEEEEEcC
Q 024413 182 WSASGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 182 ~~~~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
.......+. .+.. ...+++..+|.
T Consensus 183 ~~~l~~~l~-~~~~-~~tiiiisH~~ 206 (251)
T PRK14251 183 SSEIEETLM-ELKH-QYTFIMVTHNL 206 (251)
T ss_pred HHHHHHHHH-HHHc-CCeEEEEECCH
Confidence 232333333 3332 24555555554
No 254
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.80 E-value=2.5e-19 Score=173.08 Aligned_cols=144 Identities=15% Similarity=0.029 Sum_probs=98.2
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC-------------CCcccc------------
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV-------------MTLPFA------------ 115 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~-------------~~~~~~------------ 115 (268)
.....+++|++++|+|+||||||||+++|+|+.+ ++|.|+++|.+... ..++..
T Consensus 304 ~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~ 382 (529)
T PRK15134 304 NISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVL 382 (529)
T ss_pred cceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHH
Confidence 3455589999999999999999999999999985 89999998854310 111111
Q ss_pred cccch----h--------hHHHHHHHHHHcCCCC-CCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhh
Q 024413 116 ANIDI----R--------DTIRYKEVMKQFNLGP-NGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTW 182 (268)
Q Consensus 116 ~~~~~----~--------~~~~~~~~l~~~~l~~-~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~ 182 (268)
+++.. . ...++.++++.+++.. ... ..+..|||||+||++||+|++.+|+++|+|||+..-+...
T Consensus 383 e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~ 460 (529)
T PRK15134 383 QIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRH--RYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTV 460 (529)
T ss_pred HHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHh--cCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHH
Confidence 11100 0 1134567888999863 233 3489999999999999999999999999999987543222
Q ss_pred hhHHHHHHHHHhcc-CCcEEEEEEcC
Q 024413 183 SASGAIITEAFAST-FPTVVTYVVDT 207 (268)
Q Consensus 183 ~~~~~~i~~~~~~~-~~d~vv~vvD~ 207 (268)
......+...++.. ...+|+..+|.
T Consensus 461 ~~~l~~~l~~~~~~~~~tvi~vsHd~ 486 (529)
T PRK15134 461 QAQILALLKSLQQKHQLAYLFISHDL 486 (529)
T ss_pred HHHHHHHHHHHHHhhCCEEEEEeCCH
Confidence 33333333333333 34566665665
No 255
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.80 E-value=6.7e-19 Score=150.88 Aligned_cols=140 Identities=11% Similarity=0.058 Sum_probs=100.9
Q ss_pred cccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCc-------------------c----------
Q 024413 63 INFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTL-------------------P---------- 113 (268)
Q Consensus 63 ~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~-------------------~---------- 113 (268)
.-.+++|+.-+|+||||||||||++.++|..+|.+|.+.+.|........ +
T Consensus 51 sW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVl 130 (257)
T COG1119 51 SWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVL 130 (257)
T ss_pred ceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhcccccccceeee
Confidence 33489999999999999999999999999999999999998875432111 0
Q ss_pred --------ccc-ccchhhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCc-chhhhh
Q 024413 114 --------FAA-NIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQI-EIFTWS 183 (268)
Q Consensus 114 --------~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~-~~~~~~ 183 (268)
.+. .++-.+..++..+++.+++....... ...||-||+||+-||||++.+|+++|||||.+. |...+.
T Consensus 131 Sg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~--~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re 208 (257)
T COG1119 131 SGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRP--FGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIARE 208 (257)
T ss_pred ecccccccccccCCCHHHHHHHHHHHHHcchhhhccCc--hhhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHH
Confidence 000 11112345677789999998765555 889999999999999999999999999999885 443333
Q ss_pred hHHHHHHHHHhccCCcEEEEE
Q 024413 184 ASGAIITEAFASTFPTVVTYV 204 (268)
Q Consensus 184 ~~~~~i~~~~~~~~~d~vv~v 204 (268)
.....+.+......+-.++||
T Consensus 209 ~ll~~l~~~~~~~~~~~ll~V 229 (257)
T COG1119 209 QLLNRLEELAASPGAPALLFV 229 (257)
T ss_pred HHHHHHHHHhcCCCCceEEEE
Confidence 333444333333334444444
No 256
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=5.6e-19 Score=155.03 Aligned_cols=146 Identities=11% Similarity=-0.000 Sum_probs=95.4
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhccc-----CcccEEEEecccCCC------------CCcc---------c
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQ-----SRNIRGYVMNLDPAV------------MTLP---------F 114 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~-----~~~g~i~i~~~~~~~------------~~~~---------~ 114 (268)
.....+.+|++++|+|+||||||||+++|+|+.. +++|.++++|.+... ..++ .
T Consensus 23 ~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv 102 (251)
T PRK14244 23 DINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPKSI 102 (251)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCcccccCCH
Confidence 3344588999999999999999999999999976 469999998864310 0001 1
Q ss_pred ccccchh------------hHHHHHHHHHHcCCCCC--CCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchh
Q 024413 115 AANIDIR------------DTIRYKEVMKQFNLGPN--GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIF 180 (268)
Q Consensus 115 ~~~~~~~------------~~~~~~~~l~~~~l~~~--~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~ 180 (268)
.+++... ....+.++++.+++.+. ......+..|||||+||++||++++.+|+++|+|||+..-+.
T Consensus 103 ~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~ 182 (251)
T PRK14244 103 YDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDP 182 (251)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCH
Confidence 1111110 01234567888888642 112234789999999999999999999999999999875432
Q ss_pred hhhhHHHHHHHHHhccCCcEEEEEEcC
Q 024413 181 TWSASGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 181 ~~~~~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
........+...+.. ...+++..+|.
T Consensus 183 ~~~~~l~~~l~~~~~-~~tiiiisH~~ 208 (251)
T PRK14244 183 VATNVIENLIQELKK-NFTIIVVTHSM 208 (251)
T ss_pred HHHHHHHHHHHHHhc-CCeEEEEeCCH
Confidence 222222233333332 34455555554
No 257
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.80 E-value=5.7e-19 Score=142.68 Aligned_cols=142 Identities=14% Similarity=0.107 Sum_probs=104.8
Q ss_pred ccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccc--------------------cccch---
Q 024413 64 NFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFA--------------------ANIDI--- 120 (268)
Q Consensus 64 ~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~--------------------~~~~~--- 120 (268)
.....|+.++++||+|+|||||++.|.-+.-|++|...|-+.....+..+.. +.++.
T Consensus 23 l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~en 102 (242)
T COG4161 23 LDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQEN 102 (242)
T ss_pred ecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHH
Confidence 3468899999999999999999999999999999999997765433321111 01100
Q ss_pred --------------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHH
Q 024413 121 --------------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASG 186 (268)
Q Consensus 121 --------------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~ 186 (268)
....+..++++.+.|.+..+.. |-.|||||+||++||||++.+|+++++|||+...+-.-....
T Consensus 103 lieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~--plhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqv 180 (242)
T COG4161 103 LIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRY--PLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQI 180 (242)
T ss_pred HHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccC--ceecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHH
Confidence 1234577889999999888777 889999999999999999999999999999985431112233
Q ss_pred HHHHHHHhccCCcEEEEEEcC
Q 024413 187 AIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 187 ~~i~~~~~~~~~d~vv~vvD~ 207 (268)
-.+++.++.+...-|++.+..
T Consensus 181 v~iikel~~tgitqvivthev 201 (242)
T COG4161 181 VSIIKELAETGITQVIVTHEV 201 (242)
T ss_pred HHHHHHHHhcCceEEEEEeeh
Confidence 345555666666666655544
No 258
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.80 E-value=3.2e-19 Score=158.58 Aligned_cols=149 Identities=12% Similarity=0.044 Sum_probs=105.6
Q ss_pred CCcccccccCCeEEEEEecCCCCHHHHHHHHHhccc-C----cccEEEEecccCCCCCcc--------------cc----
Q 024413 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQ-S----RNIRGYVMNLDPAVMTLP--------------FA---- 115 (268)
Q Consensus 59 ~~~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~-~----~~g~i~i~~~~~~~~~~~--------------~~---- 115 (268)
.....+.+++|++++|+|.+||||||+.++|+|+.+ + .+|++.+.|.+.....-. +.
T Consensus 21 v~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~s 100 (316)
T COG0444 21 VDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTS 100 (316)
T ss_pred EeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCchhh
Confidence 344556689999999999999999999999999997 3 568999999875421100 00
Q ss_pred --cccch----------h--------hHHHHHHHHHHcCCCCC-CCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCC
Q 024413 116 --ANIDI----------R--------DTIRYKEVMKQFNLGPN-GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTP 174 (268)
Q Consensus 116 --~~~~~----------~--------~~~~~~~~l~~~~l~~~-~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDeP 174 (268)
+.+.+ . ...++.++++.++|.+. .....+|++|||||+||+.||.|++.+|+++|.|||
T Consensus 101 LnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEP 180 (316)
T COG0444 101 LNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEP 180 (316)
T ss_pred cCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCC
Confidence 00000 0 12356778999999854 355567999999999999999999999999999999
Q ss_pred CCcchhhhhhHHHHHHHHHhccC-CcEEEEEEcC
Q 024413 175 GQIEIFTWSASGAIITEAFASTF-PTVVTYVVDT 207 (268)
Q Consensus 175 G~~~~~~~~~~~~~i~~~~~~~~-~d~vv~vvD~ 207 (268)
+-..+..-......+.+.++... ..+++..+|-
T Consensus 181 TTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl 214 (316)
T COG0444 181 TTALDVTVQAQILDLLKELQREKGTALILITHDL 214 (316)
T ss_pred cchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 88665444444444555554433 3444444554
No 259
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=5.9e-19 Score=157.99 Aligned_cols=119 Identities=13% Similarity=0.042 Sum_probs=83.9
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhccc-----CcccEEEEecccCCC------------CCcccc--------
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQ-----SRNIRGYVMNLDPAV------------MTLPFA-------- 115 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~-----~~~g~i~i~~~~~~~------------~~~~~~-------- 115 (268)
.....+.+|++++|+|+||||||||+++|+|+.. |++|.|.++|.+... ..++..
T Consensus 57 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv 136 (286)
T PRK14275 57 KVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFPKSI 136 (286)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCCCccCH
Confidence 3445589999999999999999999999999854 489999998865321 000111
Q ss_pred -cccch-------hh----HHHHHHHHHHcCCCCC--CCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 116 -ANIDI-------RD----TIRYKEVMKQFNLGPN--GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 116 -~~~~~-------~~----~~~~~~~l~~~~l~~~--~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
+++.. .. ...+.++++.+++... ......+..|||||+||++||+|++.+|+++|+|||...-+
T Consensus 137 ~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD 214 (286)
T PRK14275 137 FDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALD 214 (286)
T ss_pred HHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 11110 00 1234456777776421 12233488999999999999999999999999999987543
No 260
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.80 E-value=4e-19 Score=143.51 Aligned_cols=82 Identities=13% Similarity=0.089 Sum_probs=70.1
Q ss_pred cccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcc
Q 024413 63 INFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGIL 142 (268)
Q Consensus 63 ~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 142 (268)
...+++|++++|+|+||||||||+++|+|..++++|.+++++.. .+.+
T Consensus 20 ~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~----~i~~---------------------------- 67 (144)
T cd03221 20 SLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTV----KIGY---------------------------- 67 (144)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeE----EEEE----------------------------
Confidence 34589999999999999999999999999999999999987631 0000
Q ss_pred cchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc
Q 024413 143 TSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE 178 (268)
Q Consensus 143 ~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~ 178 (268)
+.+||+||+||+++|++++.+|+++|+|||...-
T Consensus 68 --~~~lS~G~~~rv~laral~~~p~illlDEP~~~L 101 (144)
T cd03221 68 --FEQLSGGEKMRLALAKLLLENPNLLLLDEPTNHL 101 (144)
T ss_pred --EccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCC
Confidence 2339999999999999999999999999998654
No 261
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=6.8e-19 Score=155.26 Aligned_cols=118 Identities=15% Similarity=0.106 Sum_probs=84.5
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhccc--C---cccEEEEecccCCC------------CCc---------ccc
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQ--S---RNIRGYVMNLDPAV------------MTL---------PFA 115 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~--~---~~g~i~i~~~~~~~------------~~~---------~~~ 115 (268)
....+.+|++++|+|+||||||||+++|+|... | ++|.++++|.+... ..+ +..
T Consensus 31 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~ 110 (259)
T PRK14274 31 INLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQSIF 110 (259)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCcccccCHH
Confidence 344588999999999999999999999999986 3 58999998875421 000 011
Q ss_pred cccch--h-----h----HHHHHHHHHHcCCCCC--CCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 116 ANIDI--R-----D----TIRYKEVMKQFNLGPN--GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 116 ~~~~~--~-----~----~~~~~~~l~~~~l~~~--~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
+++.. . . ..++.++++.+++.+. ......+..|||||+||++||++++.+|+++|+|||+..-+
T Consensus 111 enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD 187 (259)
T PRK14274 111 DNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALD 187 (259)
T ss_pred HHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 11110 0 0 1234556777887532 12234478999999999999999999999999999987543
No 262
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=99.80 E-value=4.8e-19 Score=148.04 Aligned_cols=172 Identities=31% Similarity=0.519 Sum_probs=150.1
Q ss_pred EEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccchhhhcH
Q 024413 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT 150 (268)
Q Consensus 71 ~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~ 150 (268)
-..++||.||||||+++.+...-...+++..+.+.||......+...+++|+.+.++.+++.+.++||++...+...|=.
T Consensus 5 a~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDPAae~f~y~~~iDiRdlIsvdDVmEdl~~GPNGgLv~cmEyl~~ 84 (273)
T KOG1534|consen 5 AQLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDPAAEHFNYPVTIDIRDLISVDDVMEDLDLGPNGGLVYCMEYLLE 84 (273)
T ss_pred eEEEEccCCCCcchHHHHHHHHHHhhCceeEEeecCHHHHhhCCcccccHHHhccHHHHHHHhccCCCccchhHHHHHHH
Confidence 35789999999999999999999999999999999999888888888999999999999999999999998876766544
Q ss_pred HHHHHHHHHHHHhc--CCCEEEEeCCCCcchhhhhhHHHHHHHHHhc-cCCcEEEEEEcCCCcCCchhhHHHHHHHHHHH
Q 024413 151 KFDEVISLIERRAD--HLDYVLVDTPGQIEIFTWSASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (268)
Q Consensus 151 G~~qr~~ia~al~~--~~~illlDePG~~~~~~~~~~~~~i~~~~~~-~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l 227 (268)
.-.+.-. -.+ +-+++++|+|||.+.+++......+++.+.. .+..++||++|+....+..++....+.++..+
T Consensus 85 NldwL~~----~~Gd~eddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAM 160 (273)
T KOG1534|consen 85 NLDWLEE----EIGDVEDDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAM 160 (273)
T ss_pred HHHHHHh----hccCccCCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHH
Confidence 4443322 222 6789999999999999999988899888865 77899999999998888889999999888888
Q ss_pred HhhCCCceeeecCCCcCCh
Q 024413 228 YKTRLPLVLAFNKTDVAQH 246 (268)
Q Consensus 228 ~~~~~p~ilV~NK~Dl~~~ 246 (268)
...++|.|.|+.|+||.+.
T Consensus 161 i~lE~P~INvlsKMDLlk~ 179 (273)
T KOG1534|consen 161 ISLEVPHINVLSKMDLLKD 179 (273)
T ss_pred HHhcCcchhhhhHHHHhhh
Confidence 8999999999999999876
No 263
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=6.9e-19 Score=156.01 Aligned_cols=146 Identities=12% Similarity=0.038 Sum_probs=94.3
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhccc-----CcccEEEEecccCCCC------------Ccc---------c
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQ-----SRNIRGYVMNLDPAVM------------TLP---------F 114 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~-----~~~g~i~i~~~~~~~~------------~~~---------~ 114 (268)
.....+++|++++|+|+||||||||+++|+|+.. |++|.++++|.+.... .++ .
T Consensus 39 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv 118 (268)
T PRK14248 39 DISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSI 118 (268)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCccCcccH
Confidence 3345589999999999999999999999999864 6899999988654210 000 0
Q ss_pred ccccchh-----------hHHHHHHHHHHcCCCCC--CCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhh
Q 024413 115 AANIDIR-----------DTIRYKEVMKQFNLGPN--GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFT 181 (268)
Q Consensus 115 ~~~~~~~-----------~~~~~~~~l~~~~l~~~--~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~ 181 (268)
.+++... ....+.+.++.+++... ......+..|||||+||++||++++.+|+++|+|||+..-+..
T Consensus 119 ~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~ 198 (268)
T PRK14248 119 YNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPI 198 (268)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHH
Confidence 1111100 01124456667776421 1122347889999999999999999999999999998754322
Q ss_pred hhhHHHHHHHHHhccCCcEEEEEEcC
Q 024413 182 WSASGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 182 ~~~~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
.......+...+.. ...+++..+|.
T Consensus 199 ~~~~l~~~l~~~~~-~~tiii~tH~~ 223 (268)
T PRK14248 199 SNAKIEELITELKE-EYSIIIVTHNM 223 (268)
T ss_pred HHHHHHHHHHHHhc-CCEEEEEEeCH
Confidence 22233333333433 24455555554
No 264
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=7e-19 Score=154.49 Aligned_cols=145 Identities=10% Similarity=0.046 Sum_probs=95.2
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhccc--C---cccEEEEecccCCCC------------C----------ccc
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQ--S---RNIRGYVMNLDPAVM------------T----------LPF 114 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~--~---~~g~i~i~~~~~~~~------------~----------~~~ 114 (268)
....+++|++++|+|+||||||||+++|+|..+ | ++|.++++|.+.... . .+.
T Consensus 23 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 102 (252)
T PRK14256 23 VSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSI 102 (252)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCCCcCcH
Confidence 344589999999999999999999999999985 3 589999988654210 0 011
Q ss_pred ccccch-----h--h----HHHHHHHHHHcCCCCC--CCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhh
Q 024413 115 AANIDI-----R--D----TIRYKEVMKQFNLGPN--GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFT 181 (268)
Q Consensus 115 ~~~~~~-----~--~----~~~~~~~l~~~~l~~~--~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~ 181 (268)
.+++.. . . ...+.++++.+++... ......+..||+||+||++||++++.+|+++|+|||...-+..
T Consensus 103 ~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~ 182 (252)
T PRK14256 103 YDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPI 182 (252)
T ss_pred HHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 111111 0 0 1235567778887531 1122347899999999999999999999999999998754322
Q ss_pred hhhHHHHHHHHHhccCCcEEEEEEcC
Q 024413 182 WSASGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 182 ~~~~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
.......+.+.+.. ...+|+..+|.
T Consensus 183 ~~~~l~~~l~~~~~-~~tiiivsH~~ 207 (252)
T PRK14256 183 STLKIEELIEELKE-KYTIIIVTHNM 207 (252)
T ss_pred HHHHHHHHHHHHHh-CCcEEEEECCH
Confidence 22223333334433 24445544554
No 265
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.80 E-value=6.5e-19 Score=149.73 Aligned_cols=136 Identities=12% Similarity=0.017 Sum_probs=86.6
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhc--ccCcccEEEEecccCCCCCccc--ccccch--hh-----HHHHHHH
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCH--TQSRNIRGYVMNLDPAVMTLPF--AANIDI--RD-----TIRYKEV 129 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~--~~~~~g~i~i~~~~~~~~~~~~--~~~~~~--~~-----~~~~~~~ 129 (268)
.....+.+|++++|+|+||||||||+++|+|. ..|++|.++++|.+........ ...+.. .+ ...+.+.
T Consensus 18 ~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~ 97 (200)
T cd03217 18 GVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADF 97 (200)
T ss_pred ccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHH
Confidence 33445899999999999999999999999999 4789999999987653211000 000000 00 0111122
Q ss_pred HHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcC
Q 024413 130 MKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 130 l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
+ ......||+||+||+++|++++.+|+++|+|||+..-+.........+...++.....+++..+|.
T Consensus 98 l-----------~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~ 164 (200)
T cd03217 98 L-----------RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQ 164 (200)
T ss_pred H-----------hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCH
Confidence 1 111357999999999999999999999999999875432222222233333333334445444443
No 266
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.80 E-value=4.6e-19 Score=167.87 Aligned_cols=136 Identities=15% Similarity=0.032 Sum_probs=100.2
Q ss_pred CCcccccccCCeEEEEEecCCCCHHHHHHHHHhcccCc----ccEEEEecccCCCCC--------------cccc-----
Q 024413 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSR----NIRGYVMNLDPAVMT--------------LPFA----- 115 (268)
Q Consensus 59 ~~~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~----~g~i~i~~~~~~~~~--------------~~~~----- 115 (268)
.....+.+.+|++++|+|.+||||||+.++|.|+.++. +|+|.++|.+..... +.+.
T Consensus 25 v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~sl 104 (539)
T COG1123 25 VRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSL 104 (539)
T ss_pred eecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhc
Confidence 34455568999999999999999999999999999887 799999998653211 0000
Q ss_pred -cccch-----------------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCc
Q 024413 116 -ANIDI-----------------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQI 177 (268)
Q Consensus 116 -~~~~~-----------------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~ 177 (268)
+-+.+ ....++.++++.++|.+......+|++||||||||+.||+|++.+|+++|+|||+-.
T Consensus 105 nP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTa 184 (539)
T COG1123 105 NPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTA 184 (539)
T ss_pred CchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccc
Confidence 00111 124567789999999876665556999999999999999999999999999999775
Q ss_pred chhhhhhHHHHHHHHHh
Q 024413 178 EIFTWSASGAIITEAFA 194 (268)
Q Consensus 178 ~~~~~~~~~~~i~~~~~ 194 (268)
.+.+-......+++.+.
T Consensus 185 LDvt~q~qIL~llk~l~ 201 (539)
T COG1123 185 LDVTTQAQILDLLKDLQ 201 (539)
T ss_pred cCHHHHHHHHHHHHHHH
Confidence 44333333333444433
No 267
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.80 E-value=6.9e-19 Score=165.58 Aligned_cols=149 Identities=14% Similarity=0.090 Sum_probs=111.4
Q ss_pred CcccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC---------------------CCccccccc
Q 024413 60 SSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV---------------------MTLPFAANI 118 (268)
Q Consensus 60 ~~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~---------------------~~~~~~~~~ 118 (268)
....+.+++|++++|+|.||||||||+++|+|.++|++|.|+++|..... ++++..+|+
T Consensus 25 ~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNi 104 (500)
T COG1129 25 DGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENI 104 (500)
T ss_pred ccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHHHHh
Confidence 34455689999999999999999999999999999999999999986432 223333333
Q ss_pred ch--------------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhh
Q 024413 119 DI--------------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSA 184 (268)
Q Consensus 119 ~~--------------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~ 184 (268)
-+ .-..+..+++..+++... ....+.+||.||||.|+||+|+..+++++|+|||+......+..
T Consensus 105 fLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~--~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~ 182 (500)
T COG1129 105 FLGREPTRRFGLIDRKAMRRRARELLARLGLDID--PDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETE 182 (500)
T ss_pred hcccccccCCCccCHHHHHHHHHHHHHHcCCCCC--hhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 11 123456778898988633 33448999999999999999999999999999999876544444
Q ss_pred HHHHHHHHHhcc----------------CCcEEEEEEcCCCc
Q 024413 185 SGAIITEAFAST----------------FPTVVTYVVDTPRS 210 (268)
Q Consensus 185 ~~~~i~~~~~~~----------------~~d~vv~vvD~~~~ 210 (268)
....+++.++.. .+|.|.++-|+...
T Consensus 183 ~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v 224 (500)
T COG1129 183 RLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVV 224 (500)
T ss_pred HHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEe
Confidence 555555555543 26777777777543
No 268
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=8.6e-19 Score=153.70 Aligned_cols=118 Identities=15% Similarity=0.099 Sum_probs=84.4
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccC-----cccEEEEecccCCC---------C---Cc---------ccc
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQS-----RNIRGYVMNLDPAV---------M---TL---------PFA 115 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~-----~~g~i~i~~~~~~~---------~---~~---------~~~ 115 (268)
....+++|++++|+|+||||||||+++|+|+..+ ++|.++++|.+... . .+ +..
T Consensus 22 i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 101 (250)
T PRK14262 22 VTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIY 101 (250)
T ss_pred eeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCccCcccHH
Confidence 3445899999999999999999999999999874 88999998865321 0 00 111
Q ss_pred cccchh-----------hHHHHHHHHHHcCCCCC--CCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 116 ANIDIR-----------DTIRYKEVMKQFNLGPN--GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 116 ~~~~~~-----------~~~~~~~~l~~~~l~~~--~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
+++... ....+.++++.+++... ......+..|||||+||++||+|++.+|+++|+|||...-+
T Consensus 102 e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD 178 (250)
T PRK14262 102 DNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALD 178 (250)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccC
Confidence 111110 01124456777777532 11233488999999999999999999999999999987543
No 269
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=8.9e-19 Score=153.75 Aligned_cols=144 Identities=14% Similarity=0.059 Sum_probs=94.9
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccC-----cccEEEEecccCCCC------------C---------cccc
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQS-----RNIRGYVMNLDPAVM------------T---------LPFA 115 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~-----~~g~i~i~~~~~~~~------------~---------~~~~ 115 (268)
....+.+|++++|+|+||||||||+++|+|..+| ++|.++++|.+.... . .+..
T Consensus 23 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 102 (251)
T PRK14270 23 INLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIY 102 (251)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcCCCcHH
Confidence 3445889999999999999999999999999875 789999988664210 0 0111
Q ss_pred cccchh-------h----HHHHHHHHHHcCCCCC--CCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc-hhh
Q 024413 116 ANIDIR-------D----TIRYKEVMKQFNLGPN--GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE-IFT 181 (268)
Q Consensus 116 ~~~~~~-------~----~~~~~~~l~~~~l~~~--~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~-~~~ 181 (268)
+++... . ...+.++++.+++... ......+..||+||+||++||++++.+|+++|+|||...- +.+
T Consensus 103 enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~ 182 (251)
T PRK14270 103 DNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPIS 182 (251)
T ss_pred HHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 111110 0 1234567788877421 1222347899999999999999999999999999998754 332
Q ss_pred hhhHHHHHHHHHhccCCcEEEEEEcC
Q 024413 182 WSASGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 182 ~~~~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
...... +.+.+... ..+|+..+|.
T Consensus 183 ~~~l~~-~L~~~~~~-~tiiivsH~~ 206 (251)
T PRK14270 183 TLKIED-LMVELKKE-YTIVIVTHNM 206 (251)
T ss_pred HHHHHH-HHHHHHhC-CeEEEEEcCH
Confidence 233333 33333332 4445444444
No 270
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.80 E-value=6.6e-19 Score=173.54 Aligned_cols=115 Identities=19% Similarity=0.118 Sum_probs=85.2
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCC--------CCC-ccccc---------------
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA--------VMT-LPFAA--------------- 116 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~--------~~~-~~~~~--------------- 116 (268)
...+.+.+|++++|+||||||||||+++|+|...|++|.|++.+.... ... .....
T Consensus 21 ~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~ 100 (635)
T PRK11147 21 NAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKR 100 (635)
T ss_pred CcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHH
Confidence 445568999999999999999999999999999999999998763110 000 00000
Q ss_pred ---------------ccch--------------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCC
Q 024413 117 ---------------NIDI--------------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLD 167 (268)
Q Consensus 117 ---------------~~~~--------------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~ 167 (268)
++.. ....++.++++.+++.. ...+..|||||+||++||++++.+|+
T Consensus 101 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~----~~~~~~LSgGekqRv~LAraL~~~P~ 176 (635)
T PRK11147 101 YHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDP----DAALSSLSGGWLRKAALGRALVSNPD 176 (635)
T ss_pred HHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCC----CCchhhcCHHHHHHHHHHHHHhcCCC
Confidence 0000 01234667788888863 23489999999999999999999999
Q ss_pred EEEEeCCCCcch
Q 024413 168 YVLVDTPGQIEI 179 (268)
Q Consensus 168 illlDePG~~~~ 179 (268)
++|+|||+...+
T Consensus 177 lLLLDEPt~~LD 188 (635)
T PRK11147 177 VLLLDEPTNHLD 188 (635)
T ss_pred EEEEcCCCCccC
Confidence 999999988643
No 271
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=1e-18 Score=153.32 Aligned_cols=118 Identities=14% Similarity=0.084 Sum_probs=84.3
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhc---ccC--cccEEEEecccCCC------------CCc---------ccc
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCH---TQS--RNIRGYVMNLDPAV------------MTL---------PFA 115 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~---~~~--~~g~i~i~~~~~~~------------~~~---------~~~ 115 (268)
....+.+|++++|+|+||||||||+++|+|+ .++ ++|.+.++|.+... ..+ +..
T Consensus 22 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~ 101 (250)
T PRK14245 22 ISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIF 101 (250)
T ss_pred eeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCccCcccHH
Confidence 3445899999999999999999999999996 344 58999998865421 000 111
Q ss_pred cccch--h---------hHHHHHHHHHHcCCCCC--CCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 116 ANIDI--R---------DTIRYKEVMKQFNLGPN--GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 116 ~~~~~--~---------~~~~~~~~l~~~~l~~~--~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
+++.. . ....+.++++.+++... ......+..|||||+||++||++++.+|+++|+|||...-+
T Consensus 102 ~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD 178 (250)
T PRK14245 102 ENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALD 178 (250)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 11110 0 01235567888888532 12233478999999999999999999999999999987543
No 272
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.79 E-value=9.2e-19 Score=153.50 Aligned_cols=145 Identities=12% Similarity=0.001 Sum_probs=93.3
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccC-----cccEEEEecccCCC------------CCcc---------cc
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQS-----RNIRGYVMNLDPAV------------MTLP---------FA 115 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~-----~~g~i~i~~~~~~~------------~~~~---------~~ 115 (268)
....+++|++++|+|+||||||||+++|+|..++ ++|.|+++|.+... ..++ ..
T Consensus 22 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~t~~ 101 (250)
T PRK14240 22 INLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIY 101 (250)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccCcccHH
Confidence 3445889999999999999999999999998763 68999998865421 0000 11
Q ss_pred cccchh-----------hHHHHHHHHHHcCCCCC--CCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhh
Q 024413 116 ANIDIR-----------DTIRYKEVMKQFNLGPN--GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTW 182 (268)
Q Consensus 116 ~~~~~~-----------~~~~~~~~l~~~~l~~~--~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~ 182 (268)
+++... ....+.++++.+++... ......+..|||||+||++||++++.+|+++|+|||...-+...
T Consensus 102 ~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~ 181 (250)
T PRK14240 102 DNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPIS 181 (250)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH
Confidence 111110 01234455667766421 11223478899999999999999999999999999987543222
Q ss_pred hhHHHHHHHHHhccCCcEEEEEEcC
Q 024413 183 SASGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 183 ~~~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
......+...+.. ...+++..+|.
T Consensus 182 ~~~l~~~l~~~~~-~~tiii~sH~~ 205 (250)
T PRK14240 182 TLKIEELIQELKK-DYTIVIVTHNM 205 (250)
T ss_pred HHHHHHHHHHHhc-CCeEEEEEeCH
Confidence 2222233333333 34455555554
No 273
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.79 E-value=4.7e-19 Score=151.87 Aligned_cols=144 Identities=15% Similarity=0.069 Sum_probs=106.6
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCC--------CCCcccccccchh----------h
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA--------VMTLPFAANIDIR----------D 122 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~--------~~~~~~~~~~~~~----------~ 122 (268)
...+.+++|+.++|+|+||||||||++.|+|.++|++|.+.+.|.-.. ...+++.+|+.+. -
T Consensus 45 disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G~~~~ei 124 (249)
T COG1134 45 DISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGLTRKEI 124 (249)
T ss_pred CceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhCccHHHH
Confidence 445568999999999999999999999999999999999999887421 2234555555431 1
Q ss_pred HHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCc-chhhhhhHHHHHHHHHhccCCcEE
Q 024413 123 TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQI-EIFTWSASGAIITEAFASTFPTVV 201 (268)
Q Consensus 123 ~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~-~~~~~~~~~~~i~~~~~~~~~d~v 201 (268)
...++++.+.-.|++..... +++||.||+-|++++.|...+|+++|+||.... |..-...+...+.+..... ..+|
T Consensus 125 ~~~~~eIieFaELG~fi~~P--vktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~-~tiv 201 (249)
T COG1134 125 DEKVDEIIEFAELGDFIDQP--VKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKN-KTIV 201 (249)
T ss_pred HHHHHHHHHHHHHHHHhhCc--hhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcC-CEEE
Confidence 33567788888888777766 999999999999999999999999999999553 4322333444444443333 5566
Q ss_pred EEEEcC
Q 024413 202 TYVVDT 207 (268)
Q Consensus 202 v~vvD~ 207 (268)
++.+|.
T Consensus 202 ~VSHd~ 207 (249)
T COG1134 202 LVSHDL 207 (249)
T ss_pred EEECCH
Confidence 655665
No 274
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=6.8e-19 Score=170.12 Aligned_cols=116 Identities=11% Similarity=0.066 Sum_probs=87.2
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCC---CC--------Ccccccccch-----hhHHH
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA---VM--------TLPFAANIDI-----RDTIR 125 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~---~~--------~~~~~~~~~~-----~~~~~ 125 (268)
....+++|++++|+||||||||||+++|+|+.+|++|.|.+.+.... .. ..+..+++.. .....
T Consensus 338 is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~ 417 (530)
T PRK15064 338 LNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQA 417 (530)
T ss_pred cEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCCCCcHHHHHHHhccCCccHHH
Confidence 34558999999999999999999999999999999999988763211 11 1111222111 12335
Q ss_pred HHHHHHHcCCC-CCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 126 YKEVMKQFNLG-PNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 126 ~~~~l~~~~l~-~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
+.++++.+++. .... ..+..|||||+||++||++++.+|+++|+|||+..-+
T Consensus 418 ~~~~l~~~~l~~~~~~--~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD 470 (530)
T PRK15064 418 VRGTLGRLLFSQDDIK--KSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMD 470 (530)
T ss_pred HHHHHHHcCCChhHhc--CcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 67788999884 3333 3389999999999999999999999999999987543
No 275
>PLN03211 ABC transporter G-25; Provisional
Probab=99.79 E-value=6.7e-19 Score=173.69 Aligned_cols=146 Identities=16% Similarity=0.139 Sum_probs=99.9
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCc--ccEEEEecccCCC----------------CCcccccccch---
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSR--NIRGYVMNLDPAV----------------MTLPFAANIDI--- 120 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~--~g~i~i~~~~~~~----------------~~~~~~~~~~~--- 120 (268)
....+++|++++|+||||||||||+++|+|..++. +|.|.++|.+... ...+..+++..
T Consensus 87 vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~ 166 (659)
T PLN03211 87 VTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSL 166 (659)
T ss_pred CEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHHHHHHHHH
Confidence 34458999999999999999999999999998875 8999998875311 11122222211
Q ss_pred ----------hhHHHHHHHHHHcCCCCCCCcc---cchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHH
Q 024413 121 ----------RDTIRYKEVMKQFNLGPNGGIL---TSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGA 187 (268)
Q Consensus 121 ----------~~~~~~~~~l~~~~l~~~~~~~---~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~ 187 (268)
....+++++++.++|....+.. ..++.||||||||++||++++.+|+++|+|||+..-+........
T Consensus 167 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~ 246 (659)
T PLN03211 167 LRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLV 246 (659)
T ss_pred hCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHH
Confidence 0123467789999997643221 226789999999999999999999999999998754422222333
Q ss_pred HHHHHHhccCCcEEEEEEcC
Q 024413 188 IITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 188 ~i~~~~~~~~~d~vv~vvD~ 207 (268)
.+.+.++.....+++..++.
T Consensus 247 ~~L~~l~~~g~TvI~~sH~~ 266 (659)
T PLN03211 247 LTLGSLAQKGKTIVTSMHQP 266 (659)
T ss_pred HHHHHHHhCCCEEEEEecCC
Confidence 33333433334555555554
No 276
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=1.1e-18 Score=154.39 Aligned_cols=119 Identities=17% Similarity=0.061 Sum_probs=87.2
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccC-----cccEEEEecccCCC---C---------C---------ccc
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQS-----RNIRGYVMNLDPAV---M---------T---------LPF 114 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~-----~~g~i~i~~~~~~~---~---------~---------~~~ 114 (268)
.....+.+|++++|+|+||||||||+++|+|++.| ++|.++++|.+... . . .+.
T Consensus 26 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv 105 (261)
T PRK14263 26 DSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPFSMSI 105 (261)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCccccccH
Confidence 34455899999999999999999999999999976 79999999876421 0 0 011
Q ss_pred ccccchh---------hHHHHHHHHHHcCCCCCC--CcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 115 AANIDIR---------DTIRYKEVMKQFNLGPNG--GILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 115 ~~~~~~~---------~~~~~~~~l~~~~l~~~~--~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
.+++... ...++.++++.+++.... .....+..||+||+||++||+|++.+|+++|+|||...-+
T Consensus 106 ~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD 181 (261)
T PRK14263 106 FDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALD 181 (261)
T ss_pred HHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCC
Confidence 1111110 012456778888885421 1223478899999999999999999999999999987543
No 277
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=9.8e-19 Score=154.29 Aligned_cols=146 Identities=12% Similarity=0.011 Sum_probs=94.7
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccC-----cccEEEEecccCCC------------CC---------ccc
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQS-----RNIRGYVMNLDPAV------------MT---------LPF 114 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~-----~~g~i~i~~~~~~~------------~~---------~~~ 114 (268)
.....+++|++++|+|+||||||||+++|+|+.++ ++|.++++|.+... .. .+.
T Consensus 25 ~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv 104 (259)
T PRK14260 25 GISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSI 104 (259)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccccCCccH
Confidence 34455899999999999999999999999999875 48999998865321 00 011
Q ss_pred ccccch----h---h----HHHHHHHHHHcCCCCC--CCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhh
Q 024413 115 AANIDI----R---D----TIRYKEVMKQFNLGPN--GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFT 181 (268)
Q Consensus 115 ~~~~~~----~---~----~~~~~~~l~~~~l~~~--~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~ 181 (268)
.+++.. . . ...+.++++.+++... ......+..||+||+||++||+|++.+|+++|+|||+..-+..
T Consensus 105 ~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~ 184 (259)
T PRK14260 105 YENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPI 184 (259)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHH
Confidence 111111 0 0 1234566777777421 1222347899999999999999999999999999998754322
Q ss_pred hhhHHHHHHHHHhccCCcEEEEEEcC
Q 024413 182 WSASGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 182 ~~~~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
.......+...++. ...+++..+|.
T Consensus 185 ~~~~l~~~l~~~~~-~~tiii~tH~~ 209 (259)
T PRK14260 185 ATMKVEELIHSLRS-ELTIAIVTHNM 209 (259)
T ss_pred HHHHHHHHHHHHhc-CCEEEEEeCCH
Confidence 22233333333333 24444444444
No 278
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=1.1e-18 Score=153.27 Aligned_cols=146 Identities=12% Similarity=0.021 Sum_probs=94.1
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCc-----ccEEEEecccCCCC------------Cc---------cc
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSR-----NIRGYVMNLDPAVM------------TL---------PF 114 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~-----~g~i~i~~~~~~~~------------~~---------~~ 114 (268)
.....+.+|++++|+|+||||||||+++|+|+.+|+ .|.++++|.+.... .+ +.
T Consensus 22 ~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv 101 (251)
T PRK14249 22 NINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSI 101 (251)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCccCcCcH
Confidence 334458899999999999999999999999999987 59999988654210 00 11
Q ss_pred ccccchh-------h----HHHHHHHHHHcCCCCC--CCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhh
Q 024413 115 AANIDIR-------D----TIRYKEVMKQFNLGPN--GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFT 181 (268)
Q Consensus 115 ~~~~~~~-------~----~~~~~~~l~~~~l~~~--~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~ 181 (268)
.+++... . ...+.++++.+++... ......+..||+||+||++||+|++.+|+++|+|||...-+..
T Consensus 102 ~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~ 181 (251)
T PRK14249 102 FDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPV 181 (251)
T ss_pred HHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHH
Confidence 1111110 0 1223445566666421 1123448899999999999999999999999999998754322
Q ss_pred hhhHHHHHHHHHhccCCcEEEEEEcC
Q 024413 182 WSASGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 182 ~~~~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
.......+...+. ....+++..+|.
T Consensus 182 ~~~~l~~~l~~~~-~~~tilivsh~~ 206 (251)
T PRK14249 182 STMRIEELMQELK-QNYTIAIVTHNM 206 (251)
T ss_pred HHHHHHHHHHHHh-cCCEEEEEeCCH
Confidence 2222333333343 234455544444
No 279
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.79 E-value=9.1e-19 Score=153.64 Aligned_cols=146 Identities=12% Similarity=-0.010 Sum_probs=93.3
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcc--cC---cccEEEEecccCCC------------CCc---------cc
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHT--QS---RNIRGYVMNLDPAV------------MTL---------PF 114 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~--~~---~~g~i~i~~~~~~~------------~~~---------~~ 114 (268)
.....+.+|++++|+|+||||||||+++|+|+. .| ++|.|+++|.+... ..+ +.
T Consensus 23 ~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv 102 (252)
T PRK14239 23 SVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFPMSI 102 (252)
T ss_pred eeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccCcCcH
Confidence 334458899999999999999999999999985 35 48999998865410 001 11
Q ss_pred ccccch-------hh----HHHHHHHHHHcCCCCC--CCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhh
Q 024413 115 AANIDI-------RD----TIRYKEVMKQFNLGPN--GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFT 181 (268)
Q Consensus 115 ~~~~~~-------~~----~~~~~~~l~~~~l~~~--~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~ 181 (268)
.+++.. .. ...+.++++.+++... ......+..||+||+||+++|+|++.+|+++|+|||...-+..
T Consensus 103 ~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~ 182 (252)
T PRK14239 103 YENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPI 182 (252)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHH
Confidence 111110 00 1224446677776431 1122347889999999999999999999999999998754322
Q ss_pred hhhHHHHHHHHHhccCCcEEEEEEcC
Q 024413 182 WSASGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 182 ~~~~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
.......+.+.+.. ...+++..+|.
T Consensus 183 ~~~~l~~~l~~~~~-~~tii~~sH~~ 207 (252)
T PRK14239 183 SAGKIEETLLGLKD-DYTMLLVTRSM 207 (252)
T ss_pred HHHHHHHHHHHHhh-CCeEEEEECCH
Confidence 22223333333333 23444444444
No 280
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=1.2e-18 Score=152.81 Aligned_cols=146 Identities=13% Similarity=0.070 Sum_probs=91.6
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCc-----ccEEEEecccCCC------------CC----------cc
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSR-----NIRGYVMNLDPAV------------MT----------LP 113 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~-----~g~i~i~~~~~~~------------~~----------~~ 113 (268)
.....+++|++++|+|+||||||||+++|+|...|+ +|.|+++|.+... .. .+
T Consensus 22 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 101 (252)
T PRK14272 22 NVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMS 101 (252)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCccCcCCC
Confidence 334458899999999999999999999999998764 7999998865421 00 01
Q ss_pred cccccch--h-----hH----HHHHHHHHHcCCCCC--CCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchh
Q 024413 114 FAANIDI--R-----DT----IRYKEVMKQFNLGPN--GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIF 180 (268)
Q Consensus 114 ~~~~~~~--~-----~~----~~~~~~l~~~~l~~~--~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~ 180 (268)
..+++.. . .. ..+.++++.+++... ......+..|||||+||++||++++.+|+++|+|||...-+.
T Consensus 102 ~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~ 181 (252)
T PRK14272 102 VFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDP 181 (252)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCH
Confidence 1111110 0 01 112233445554321 112334789999999999999999999999999999875432
Q ss_pred hhhhHHHHHHHHHhccCCcEEEEEEcC
Q 024413 181 TWSASGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 181 ~~~~~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
........+.+.++. ...+|+..+|.
T Consensus 182 ~~~~~l~~~l~~~~~-~~tiii~sH~~ 207 (252)
T PRK14272 182 ASTARIEDLMTDLKK-VTTIIIVTHNM 207 (252)
T ss_pred HHHHHHHHHHHHHhc-CCeEEEEeCCH
Confidence 222222333333433 23444444443
No 281
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=1.2e-18 Score=153.73 Aligned_cols=147 Identities=15% Similarity=0.107 Sum_probs=94.6
Q ss_pred CcccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEec------ccCC----------CC----------Ccc
Q 024413 60 SSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMN------LDPA----------VM----------TLP 113 (268)
Q Consensus 60 ~~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~------~~~~----------~~----------~~~ 113 (268)
......+.+|++++|+|+||||||||+++|+|...|++|.+.+.| .+.. .. ..+
T Consensus 27 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 106 (257)
T PRK14246 27 KDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLS 106 (257)
T ss_pred eceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCccCCCCc
Confidence 344455889999999999999999999999999999987665554 2211 00 011
Q ss_pred cccccch-------hh----HHHHHHHHHHcCCCCC--CCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchh
Q 024413 114 FAANIDI-------RD----TIRYKEVMKQFNLGPN--GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIF 180 (268)
Q Consensus 114 ~~~~~~~-------~~----~~~~~~~l~~~~l~~~--~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~ 180 (268)
..+++.. .. ...+.++++.+++.+. ......+..||+||+||++||++++.+|+++|+|||+..-+.
T Consensus 107 v~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~ 186 (257)
T PRK14246 107 IYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDI 186 (257)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCH
Confidence 1111111 01 1235667888888631 112234789999999999999999999999999999875432
Q ss_pred hhhhHHHHHHHHHhccCCcEEEEEEcC
Q 024413 181 TWSASGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 181 ~~~~~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
........+...+.. ...+++..+|.
T Consensus 187 ~~~~~l~~~l~~~~~-~~tiilvsh~~ 212 (257)
T PRK14246 187 VNSQAIEKLITELKN-EIAIVIVSHNP 212 (257)
T ss_pred HHHHHHHHHHHHHhc-CcEEEEEECCH
Confidence 222233333333332 24455544444
No 282
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.79 E-value=1.3e-18 Score=169.01 Aligned_cols=116 Identities=15% Similarity=0.051 Sum_probs=83.2
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEeccc---------CCCCCcccccccch--h--------
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLD---------PAVMTLPFAANIDI--R-------- 121 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~---------~~~~~~~~~~~~~~--~-------- 121 (268)
.....+.+|++++|+|+||||||||+++|+|..+|++|.|++.+.. ......+..+++.. .
T Consensus 23 ~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~ 102 (552)
T TIGR03719 23 DISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDR 102 (552)
T ss_pred CceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHH
Confidence 4455689999999999999999999999999999999998875321 11111122222210 0
Q ss_pred ------------h------------------------HHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcC
Q 024413 122 ------------D------------------------TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADH 165 (268)
Q Consensus 122 ------------~------------------------~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~ 165 (268)
. ..++.++++.+++.. . ...+..||||||||++||++++.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~--~~~~~~LSgGqkqrv~la~al~~~ 179 (552)
T TIGR03719 103 FNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP-W--DADVTKLSGGERRRVALCRLLLSK 179 (552)
T ss_pred HHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc-c--cCchhhcCHHHHHHHHHHHHHhcC
Confidence 0 012344566667742 2 334899999999999999999999
Q ss_pred CCEEEEeCCCCcch
Q 024413 166 LDYVLVDTPGQIEI 179 (268)
Q Consensus 166 ~~illlDePG~~~~ 179 (268)
|+++|+|||+..-+
T Consensus 180 p~lLLLDEPt~~LD 193 (552)
T TIGR03719 180 PDMLLLDEPTNHLD 193 (552)
T ss_pred CCEEEEcCCCCCCC
Confidence 99999999987543
No 283
>PRK13768 GTPase; Provisional
Probab=99.79 E-value=3.1e-18 Score=150.82 Aligned_cols=179 Identities=37% Similarity=0.621 Sum_probs=131.5
Q ss_pred eEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccchhhhc
Q 024413 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (268)
Q Consensus 70 ~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~lS 149 (268)
.++++.|++|+||||+...++......+..+.+.+.|+.....++....++++.....+++...++++++....+...++
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~~~~~~~~~~~~i~~~~~~~~v~~~~~l~p~~~~~~~~~~~~ 82 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAVEYLPYTPDFDVRDYVTAREIMKKYGLGPNGALIASVDLLL 82 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCccccCCCCCCcchhhheeHHHHHHHcCCCCchHHHHHHHHHH
Confidence 46899999999999999999988877777888888888777777777777777777888888889988877664333333
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHh
Q 024413 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK 229 (268)
Q Consensus 150 ~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~ 229 (268)
....+....+.. .+.+++|+|+||+.+++........+.+.+....++++++++|+....++.++.............
T Consensus 83 ~~~~~l~~~l~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~ 160 (253)
T PRK13768 83 TKADEIKEEIES--LDADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLR 160 (253)
T ss_pred HHHHHHHHHHHh--cCCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHH
Confidence 333333333332 356999999999999877666666777776554489999999998777776654433222222235
Q ss_pred hCCCceeeecCCCcCChhhhh
Q 024413 230 TRLPLVLAFNKTDVAQHEFAL 250 (268)
Q Consensus 230 ~~~p~ilV~NK~Dl~~~~~~~ 250 (268)
.++|+++|+||+|+++..+..
T Consensus 161 ~~~~~i~v~nK~D~~~~~~~~ 181 (253)
T PRK13768 161 LGLPQIPVLNKADLLSEEELE 181 (253)
T ss_pred cCCCEEEEEEhHhhcCchhHH
Confidence 689999999999998875543
No 284
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.6e-18 Score=143.00 Aligned_cols=116 Identities=14% Similarity=0.083 Sum_probs=95.2
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC-------------------Ccccccccchh
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM-------------------TLPFAANIDIR 121 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~-------------------~~~~~~~~~~~ 121 (268)
...+.+..|+.+.|.||||+|||||+++|+|+.+|++|.|++.+...... .++..+|+.++
T Consensus 20 ~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ENL~F~ 99 (209)
T COG4133 20 DLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFW 99 (209)
T ss_pred ceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhHHHHHHHH
Confidence 33445889999999999999999999999999999999999997654322 12333333322
Q ss_pred -------hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc
Q 024413 122 -------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE 178 (268)
Q Consensus 122 -------~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~ 178 (268)
+...+.+.++.++|....+.. +.+||-||++|+++||-.+..+++.|+|||...-
T Consensus 100 ~~~~~~~~~~~i~~Al~~vgL~g~~dlp--~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taL 161 (209)
T COG4133 100 QRFHGSGNAATIWEALAQVGLAGLEDLP--VGQLSAGQQRRVALARLWLSPAPLWILDEPFTAL 161 (209)
T ss_pred HHHhCCCchhhHHHHHHHcCcccccccc--hhhcchhHHHHHHHHHHHcCCCCceeecCccccc
Confidence 245678899999999888888 8999999999999999999999999999997643
No 285
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.79 E-value=1.2e-18 Score=154.25 Aligned_cols=146 Identities=12% Similarity=0.006 Sum_probs=92.6
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhccc-----CcccEEEEecccCCC------------CCcc---------c
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQ-----SRNIRGYVMNLDPAV------------MTLP---------F 114 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~-----~~~g~i~i~~~~~~~------------~~~~---------~ 114 (268)
.....+++|++++|+|+||||||||+++|+|+.. +++|.+++++.+... ..++ .
T Consensus 28 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv 107 (264)
T PRK14243 28 NVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPKSI 107 (264)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCccccccH
Confidence 3345589999999999999999999999999876 378999998865421 0000 1
Q ss_pred ccccch----h-----hHHHHHHHHHHcCCCCC--CCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhh
Q 024413 115 AANIDI----R-----DTIRYKEVMKQFNLGPN--GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWS 183 (268)
Q Consensus 115 ~~~~~~----~-----~~~~~~~~l~~~~l~~~--~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~ 183 (268)
.+++.. . ....+.++++.+++... ......+..|||||+||++||+|++.+|+++|+|||...-+....
T Consensus 108 ~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~ 187 (264)
T PRK14243 108 YDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPIST 187 (264)
T ss_pred HHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHH
Confidence 111110 0 01223445666666321 112234788999999999999999999999999999875432222
Q ss_pred hHHHHHHHHHhccCCcEEEEEEcC
Q 024413 184 ASGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 184 ~~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
.....+...+... ..+|+..+|.
T Consensus 188 ~~l~~~L~~~~~~-~tvi~vtH~~ 210 (264)
T PRK14243 188 LRIEELMHELKEQ-YTIIIVTHNM 210 (264)
T ss_pred HHHHHHHHHHhcC-CEEEEEecCH
Confidence 2233333333332 3444444443
No 286
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.79 E-value=1.5e-18 Score=153.84 Aligned_cols=146 Identities=15% Similarity=0.042 Sum_probs=95.0
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhccc-----CcccEEEEecccCCC------------CCcc---------c
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQ-----SRNIRGYVMNLDPAV------------MTLP---------F 114 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~-----~~~g~i~i~~~~~~~------------~~~~---------~ 114 (268)
.....+.+|++++|+|+||||||||+++|+|.+. +++|.+.++|.+... ..++ .
T Consensus 38 ~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv 117 (267)
T PRK14237 38 GIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFAKSI 117 (267)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCccccccH
Confidence 3445589999999999999999999999999986 579999998865421 0001 1
Q ss_pred ccccch--h---------hHHHHHHHHHHcCCCCC--CCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhh
Q 024413 115 AANIDI--R---------DTIRYKEVMKQFNLGPN--GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFT 181 (268)
Q Consensus 115 ~~~~~~--~---------~~~~~~~~l~~~~l~~~--~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~ 181 (268)
.+++.. . ....+.++++.+++... ......+..||+||+||++||++++.+|+++|+|||...-+..
T Consensus 118 ~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~ 197 (267)
T PRK14237 118 YENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPI 197 (267)
T ss_pred HHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 111111 0 01234556778877431 1223347899999999999999999999999999998754322
Q ss_pred hhhHHHHHHHHHhccCCcEEEEEEcC
Q 024413 182 WSASGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 182 ~~~~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
.......+...+.. ...+|+..+|.
T Consensus 198 ~~~~l~~~l~~~~~-~~tiii~tH~~ 222 (267)
T PRK14237 198 STMQLEETMFELKK-NYTIIIVTHNM 222 (267)
T ss_pred HHHHHHHHHHHHhc-CCEEEEEecCH
Confidence 22222233333333 23444444443
No 287
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=1.2e-18 Score=157.31 Aligned_cols=146 Identities=14% Similarity=0.048 Sum_probs=95.3
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhccc-----CcccEEEEecccCCC------------CCcccc--------
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQ-----SRNIRGYVMNLDPAV------------MTLPFA-------- 115 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~-----~~~g~i~i~~~~~~~------------~~~~~~-------- 115 (268)
.....+.+|++++|+|+||||||||+++|+|+.+ |++|.++++|.+... ..++..
T Consensus 63 ~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv 142 (305)
T PRK14264 63 GVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPKSI 142 (305)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCccccccH
Confidence 4455589999999999999999999999999986 689999998865321 001110
Q ss_pred -cccchh-----------------------hHHHHHHHHHHcCCCCC--CCcccchhhhcHHHHHHHHHHHHHhcCCCEE
Q 024413 116 -ANIDIR-----------------------DTIRYKEVMKQFNLGPN--GGILTSLNLFTTKFDEVISLIERRADHLDYV 169 (268)
Q Consensus 116 -~~~~~~-----------------------~~~~~~~~l~~~~l~~~--~~~~~~~~~lS~G~~qr~~ia~al~~~~~il 169 (268)
+++... ....+.++++.+++... ......+..|||||+||++||+|++.+|+++
T Consensus 143 ~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lL 222 (305)
T PRK14264 143 RENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVI 222 (305)
T ss_pred HHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHHhcCCCEE
Confidence 011100 01234556777777421 1223347899999999999999999999999
Q ss_pred EEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcC
Q 024413 170 LVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 170 llDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
|+|||....+.........+++.+... ..+|+..+|.
T Consensus 223 LLDEPtsgLD~~~~~~l~~~L~~~~~~-~tiiivtH~~ 259 (305)
T PRK14264 223 LMDEPASALDPIATSKIEDLIEELAEE-YTVVVVTHNM 259 (305)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHhcC-CEEEEEEcCH
Confidence 999998754322222333333344333 4444444544
No 288
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.79 E-value=7.1e-19 Score=147.97 Aligned_cols=144 Identities=13% Similarity=0.173 Sum_probs=105.7
Q ss_pred cccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC----------------------CCcccccccchh-
Q 024413 65 FKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV----------------------MTLPFAANIDIR- 121 (268)
Q Consensus 65 ~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~----------------------~~~~~~~~~~~~- 121 (268)
.+.+|+++.|+|.||||||||+|.|+|...+++|.|.|+|.++.. ..++..+|+.++
T Consensus 28 ~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lTieENl~la~ 107 (263)
T COG1101 28 EIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAE 107 (263)
T ss_pred eecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccccHHHHHHHHH
Confidence 488999999999999999999999999999999999999987642 123344444321
Q ss_pred ---------------hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCc-chhhhhhH
Q 024413 122 ---------------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQI-EIFTWSAS 185 (268)
Q Consensus 122 ---------------~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~-~~~~~~~~ 185 (268)
-+..+.+.+..++++-.......+..|||||||-++++.|....|+++|+||-+.. ||......
T Consensus 108 ~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~v 187 (263)
T COG1101 108 SRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFV 187 (263)
T ss_pred hcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHH
Confidence 12235556677777766666666999999999999999999999999999999875 55443344
Q ss_pred HHHHHHHHhccCCcEEEEEEcCC
Q 024413 186 GAIITEAFASTFPTVVTYVVDTP 208 (268)
Q Consensus 186 ~~~i~~~~~~~~~d~vv~vvD~~ 208 (268)
+....+.+....-..+++.+..+
T Consensus 188 m~lT~kiV~~~klTtlMVTHnm~ 210 (263)
T COG1101 188 MELTAKIVEEHKLTTLMVTHNME 210 (263)
T ss_pred HHHHHHHHHhcCCceEEEeccHH
Confidence 44444444444445555555443
No 289
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=9.2e-19 Score=165.52 Aligned_cols=121 Identities=17% Similarity=0.090 Sum_probs=89.3
Q ss_pred CCcccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC----------Cccc---------ccccc
Q 024413 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM----------TLPF---------AANID 119 (268)
Q Consensus 59 ~~~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~----------~~~~---------~~~~~ 119 (268)
..+....+++|+.++|+|+||||||||++.|+|+.+|+.|++.++|.+...- .+++ .+|+.
T Consensus 337 l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~ 416 (559)
T COG4988 337 LSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENIL 416 (559)
T ss_pred cCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhh
Confidence 3444556899999999999999999999999999999999999998764311 1222 22332
Q ss_pred hh----hHHHHHHHHHHcCCCCCC----Ccccch----hhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 120 IR----DTIRYKEVMKQFNLGPNG----GILTSL----NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 120 ~~----~~~~~~~~l~~~~l~~~~----~~~~~~----~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
.. ....+.++++..++.+.- +....+ ..|||||+||+++|||+..+++++|+|||+..-+
T Consensus 417 l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD 488 (559)
T COG4988 417 LARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLD 488 (559)
T ss_pred ccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCC
Confidence 21 234566666666664321 222223 4499999999999999999999999999998654
No 290
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=1.8e-18 Score=151.61 Aligned_cols=146 Identities=13% Similarity=0.030 Sum_probs=93.8
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccC-----cccEEEEecccCCC-----------CCc---------ccc
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQS-----RNIRGYVMNLDPAV-----------MTL---------PFA 115 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~-----~~g~i~i~~~~~~~-----------~~~---------~~~ 115 (268)
.....+++|++++|+|+||||||||+++|+|..++ ++|.++++|.+... ..+ +..
T Consensus 21 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 100 (249)
T PRK14253 21 SINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFPMSIY 100 (249)
T ss_pred cceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcCcccHH
Confidence 34455899999999999999999999999999886 58999998865320 000 111
Q ss_pred cccch-------hh----HHHHHHHHHHcCCCCC--CCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhh
Q 024413 116 ANIDI-------RD----TIRYKEVMKQFNLGPN--GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTW 182 (268)
Q Consensus 116 ~~~~~-------~~----~~~~~~~l~~~~l~~~--~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~ 182 (268)
+++.. .. ...+.+.++.+++.+. ......+..|||||+||++||++++.+|+++|+|||...-+...
T Consensus 101 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~ 180 (249)
T PRK14253 101 ENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIA 180 (249)
T ss_pred HHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHH
Confidence 11110 00 1223445666776431 12223478899999999999999999999999999987543222
Q ss_pred hhHHHHHHHHHhccCCcEEEEEEcC
Q 024413 183 SASGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 183 ~~~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
......+...+... ..+|+..+|.
T Consensus 181 ~~~l~~~l~~~~~~-~tii~~sh~~ 204 (249)
T PRK14253 181 THKIEELMEELKKN-YTIVIVTHSM 204 (249)
T ss_pred HHHHHHHHHHHhcC-CeEEEEecCH
Confidence 22333333444332 3444444443
No 291
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.79 E-value=1.4e-18 Score=154.45 Aligned_cols=146 Identities=10% Similarity=-0.010 Sum_probs=95.2
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccC-----cccEEEEecccCCCC------------Cc---------cc
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQS-----RNIRGYVMNLDPAVM------------TL---------PF 114 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~-----~~g~i~i~~~~~~~~------------~~---------~~ 114 (268)
.....+++|++++|+|+||||||||+++|+|+..+ ++|.++++|.+.... .+ +.
T Consensus 43 ~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv 122 (272)
T PRK14236 43 DISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSI 122 (272)
T ss_pred eEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccCcccH
Confidence 34455899999999999999999999999999873 799999988754210 00 11
Q ss_pred ccccchh-------h----HHHHHHHHHHcCCCCC--CCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhh
Q 024413 115 AANIDIR-------D----TIRYKEVMKQFNLGPN--GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFT 181 (268)
Q Consensus 115 ~~~~~~~-------~----~~~~~~~l~~~~l~~~--~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~ 181 (268)
.+++... . ...+.++++.+++... ......+..||+||+||++||+|++.+|+++|+|||+..-+..
T Consensus 123 ~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~ 202 (272)
T PRK14236 123 YENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPI 202 (272)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHH
Confidence 1111110 0 1235556777777531 1122337889999999999999999999999999998754322
Q ss_pred hhhHHHHHHHHHhccCCcEEEEEEcC
Q 024413 182 WSASGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 182 ~~~~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
.......+...++. ...+++..+|.
T Consensus 203 ~~~~l~~~L~~~~~-~~tiiivtH~~ 227 (272)
T PRK14236 203 STLKIEELITELKS-KYTIVIVTHNM 227 (272)
T ss_pred HHHHHHHHHHHHHh-CCeEEEEeCCH
Confidence 22222333333333 24444444444
No 292
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=1.5e-18 Score=153.34 Aligned_cols=147 Identities=14% Similarity=0.038 Sum_probs=95.4
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCc-----ccEEEEecccCCC---C-------------C-----ccc
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSR-----NIRGYVMNLDPAV---M-------------T-----LPF 114 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~-----~g~i~i~~~~~~~---~-------------~-----~~~ 114 (268)
.....+++|++++|+|+||||||||+++|+|..+++ .|.++++|.+... . . .+.
T Consensus 25 ~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~~~tv 104 (261)
T PRK14258 25 GVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSV 104 (261)
T ss_pred ceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCccCcccH
Confidence 344558999999999999999999999999999985 7899888765310 0 0 011
Q ss_pred ccccchh-------h----HHHHHHHHHHcCCCCC--CCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhh
Q 024413 115 AANIDIR-------D----TIRYKEVMKQFNLGPN--GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFT 181 (268)
Q Consensus 115 ~~~~~~~-------~----~~~~~~~l~~~~l~~~--~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~ 181 (268)
.+++... . ...+.++++.+++... ......+..|||||+||+++|++++.+|+++|+|||...-+..
T Consensus 105 ~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~ 184 (261)
T PRK14258 105 YDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPI 184 (261)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHH
Confidence 1111100 0 1234567778877431 1123347899999999999999999999999999998754322
Q ss_pred hhhHHHHHHHHHhc-cCCcEEEEEEcC
Q 024413 182 WSASGAIITEAFAS-TFPTVVTYVVDT 207 (268)
Q Consensus 182 ~~~~~~~i~~~~~~-~~~d~vv~vvD~ 207 (268)
.......+...++. ....+++..+|.
T Consensus 185 ~~~~l~~~l~~l~~~~~~tiiivsH~~ 211 (261)
T PRK14258 185 ASMKVESLIQSLRLRSELTMVIVSHNL 211 (261)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEECCH
Confidence 22222233333322 234455554554
No 293
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.78 E-value=1.1e-18 Score=186.53 Aligned_cols=127 Identities=16% Similarity=0.025 Sum_probs=95.1
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC-------------------CCcccccccch-
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV-------------------MTLPFAANIDI- 120 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~-------------------~~~~~~~~~~~- 120 (268)
.....+++|++++|+|+||||||||+++|+|...|++|.|++.|.+... ..++..+++..
T Consensus 1957 ~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~ 2036 (2272)
T TIGR01257 1957 RLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLY 2036 (2272)
T ss_pred eeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHH
Confidence 3345589999999999999999999999999999999999999876421 01111222211
Q ss_pred ---h------hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCc-chhhhhhHHHHH
Q 024413 121 ---R------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQI-EIFTWSASGAII 189 (268)
Q Consensus 121 ---~------~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~-~~~~~~~~~~~i 189 (268)
+ ....++++++.++|....... ++.||||||||+++|+|++.+|+++|+|||+.. |+.........+
T Consensus 2037 a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~--~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL 2113 (2272)
T TIGR01257 2037 ARLRGVPAEEIEKVANWSIQSLGLSLYADRL--AGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTI 2113 (2272)
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCCHHHhcCC--hhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 0 122456788999998665555 899999999999999999999999999999875 544433333333
No 294
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=1.6e-18 Score=154.20 Aligned_cols=146 Identities=11% Similarity=-0.003 Sum_probs=92.7
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccC-----cccEEEEecccCCC------------CCccc---------
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQS-----RNIRGYVMNLDPAV------------MTLPF--------- 114 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~-----~~g~i~i~~~~~~~------------~~~~~--------- 114 (268)
.....+.+|++++|+|+||||||||+++|+|+..+ ++|.+.++|.+... ..++.
T Consensus 38 ~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~tv 117 (274)
T PRK14265 38 DVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPKSI 117 (274)
T ss_pred eeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCccccccH
Confidence 33445899999999999999999999999999753 58999998865421 00111
Q ss_pred ccccchh---------hHHHHHHHHHHcCCCCC--CCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhh
Q 024413 115 AANIDIR---------DTIRYKEVMKQFNLGPN--GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWS 183 (268)
Q Consensus 115 ~~~~~~~---------~~~~~~~~l~~~~l~~~--~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~ 183 (268)
.+++... ....+.+.++.+++... ......+..|||||+||++||+|++.+|+++|+|||...-+....
T Consensus 118 ~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~ 197 (274)
T PRK14265 118 YENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPIST 197 (274)
T ss_pred HHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHH
Confidence 1111110 01123445666666321 112234788999999999999999999999999999875432222
Q ss_pred hHHHHHHHHHhccCCcEEEEEEcC
Q 024413 184 ASGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 184 ~~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
.....+...+.. ...+++..+|.
T Consensus 198 ~~l~~~L~~~~~-~~tiii~sH~~ 220 (274)
T PRK14265 198 RQVEELCLELKE-QYTIIMVTHNM 220 (274)
T ss_pred HHHHHHHHHHhc-CCEEEEEeCCH
Confidence 222333333333 23444444554
No 295
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.78 E-value=2.3e-18 Score=167.03 Aligned_cols=119 Identities=12% Similarity=0.060 Sum_probs=87.4
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCC----------ccccccc---ch------h
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT----------LPFAANI---DI------R 121 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~----------~~~~~~~---~~------~ 121 (268)
.....+++|++++|+|+||||||||++.|+|+++|++|.|+++|.+..... +++...+ .+ .
T Consensus 341 ~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~ 420 (547)
T PRK10522 341 PINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPEGKPA 420 (547)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccccCch
Confidence 334458999999999999999999999999999999999999998643110 1111100 01 1
Q ss_pred hHHHHHHHHHHcCCCCCCCccc---chhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 122 DTIRYKEVMKQFNLGPNGGILT---SLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 122 ~~~~~~~~l~~~~l~~~~~~~~---~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
+...+.++++.++++....... .-..||||||||++||||+..+|+++|+|||+..-+
T Consensus 421 ~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD 481 (547)
T PRK10522 421 NPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQD 481 (547)
T ss_pred HHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCC
Confidence 2334666778887764322111 024799999999999999999999999999987543
No 296
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.78 E-value=1.1e-18 Score=186.50 Aligned_cols=143 Identities=14% Similarity=0.077 Sum_probs=102.0
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC-------------------Ccccccccch-
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM-------------------TLPFAANIDI- 120 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~-------------------~~~~~~~~~~- 120 (268)
.....+.+|++++|+|+||||||||+++|+|+.+|++|.+++.|.+.... .++..+++..
T Consensus 948 ~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~ 1027 (2272)
T TIGR01257 948 RLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFY 1027 (2272)
T ss_pred eeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHH
Confidence 34555899999999999999999999999999999999999998764210 1111222211
Q ss_pred ---h------hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCc-chhhhhhHHHHHH
Q 024413 121 ---R------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQI-EIFTWSASGAIIT 190 (268)
Q Consensus 121 ---~------~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~-~~~~~~~~~~~i~ 190 (268)
. ...++.++++.++|....+.. +++||||||||++||+|++.+|+++|+|||+.. |+.........+.
T Consensus 1028 ~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~--~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~ 1105 (2272)
T TIGR01257 1028 AQLKGRSWEEAQLEMEAMLEDTGLHHKRNEE--AQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLL 1105 (2272)
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCCchhhcCC--hhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHH
Confidence 0 123467789999998665555 999999999999999999999999999999875 4433333334343
Q ss_pred HHHhccCCcEEEEEEcC
Q 024413 191 EAFASTFPTVVTYVVDT 207 (268)
Q Consensus 191 ~~~~~~~~d~vv~vvD~ 207 (268)
+. +. ...+++..||.
T Consensus 1106 ~l-~~-g~TIIltTHdm 1120 (2272)
T TIGR01257 1106 KY-RS-GRTIIMSTHHM 1120 (2272)
T ss_pred HH-hC-CCEEEEEECCH
Confidence 33 32 23444444443
No 297
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.78 E-value=1.7e-18 Score=168.21 Aligned_cols=115 Identities=13% Similarity=0.084 Sum_probs=85.2
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCC-----------CCCcccccccch--------h
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-----------VMTLPFAANIDI--------R 121 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~-----------~~~~~~~~~~~~--------~ 121 (268)
.....+.+|++++|+|+||||||||+++|+|..+|++|.|++.+ +.. ....+..+++.. .
T Consensus 342 ~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~ 420 (556)
T PRK11819 342 DLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-TVKLAYVDQSRDALDPNKTVWEEISGGLDIIKVGN 420 (556)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-ceEEEEEeCchhhcCCCCCHHHHHHhhcccccccc
Confidence 34455899999999999999999999999999999999998733 211 111122222211 0
Q ss_pred hHHHHHHHHHHcCCCC-CCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc
Q 024413 122 DTIRYKEVMKQFNLGP-NGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE 178 (268)
Q Consensus 122 ~~~~~~~~l~~~~l~~-~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~ 178 (268)
.......+++.+++.. .... .+..|||||+||++||++++.+|+++|+|||+...
T Consensus 421 ~~~~~~~~l~~~~l~~~~~~~--~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~L 476 (556)
T PRK11819 421 REIPSRAYVGRFNFKGGDQQK--KVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDL 476 (556)
T ss_pred cHHHHHHHHHhCCCChhHhcC--chhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCC
Confidence 1223456888999853 2233 38999999999999999999999999999998754
No 298
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=2.5e-18 Score=153.19 Aligned_cols=119 Identities=15% Similarity=0.039 Sum_probs=85.1
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccC-----cccEEEEecccCCC-----------CCc---------ccc
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQS-----RNIRGYVMNLDPAV-----------MTL---------PFA 115 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~-----~~g~i~i~~~~~~~-----------~~~---------~~~ 115 (268)
.....+.+|++++|+|+||||||||+++|+|+.+| ++|.+++++.+... ..+ +..
T Consensus 39 ~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~~tv~ 118 (276)
T PRK14271 39 QVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFPMSIM 118 (276)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccCCccHH
Confidence 34455899999999999999999999999999885 69999998764310 001 111
Q ss_pred cccchh-------h----HHHHHHHHHHcCCCCCC--CcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 116 ANIDIR-------D----TIRYKEVMKQFNLGPNG--GILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 116 ~~~~~~-------~----~~~~~~~l~~~~l~~~~--~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
+++... . ...+.++++.+++.... .....+..|||||+||++||++++.+|+++|+|||...-+
T Consensus 119 eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD 195 (276)
T PRK14271 119 DNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALD 195 (276)
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 111110 0 11234567778875321 1223478999999999999999999999999999987543
No 299
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=1.6e-18 Score=170.88 Aligned_cols=116 Identities=12% Similarity=0.028 Sum_probs=85.3
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecc-cCC--CCC----cc----cccccc-h---hhHHHH
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNL-DPA--VMT----LP----FAANID-I---RDTIRY 126 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~-~~~--~~~----~~----~~~~~~-~---~~~~~~ 126 (268)
....+.+|++++|+||||||||||+++|+|..+|++|.|++.+. .+. ... +. ...++. . .....+
T Consensus 331 isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 410 (638)
T PRK10636 331 IKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAPQELEQKL 410 (638)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCccchHHHHHHHhCchhhHHHH
Confidence 34458899999999999999999999999999999999987531 111 010 00 000010 0 112346
Q ss_pred HHHHHHcCCCC-CCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 127 KEVMKQFNLGP-NGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 127 ~~~l~~~~l~~-~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
.++++.+++.. ... ..+..||||||||++||++++.+|+++|+|||+...+
T Consensus 411 ~~~L~~~~l~~~~~~--~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD 462 (638)
T PRK10636 411 RDYLGGFGFQGDKVT--EETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLD 462 (638)
T ss_pred HHHHHHcCCChhHhc--CchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 67889998853 233 3389999999999999999999999999999988543
No 300
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.78 E-value=2e-18 Score=167.68 Aligned_cols=117 Identities=13% Similarity=0.054 Sum_probs=85.5
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCC-----------CCCcccccccch-------h-
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-----------VMTLPFAANIDI-------R- 121 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~-----------~~~~~~~~~~~~-------~- 121 (268)
.....+++|++++|+||||||||||+++|+|..+|++|.|++.+ +.. ....+..+++.. .
T Consensus 340 ~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~ 418 (552)
T TIGR03719 340 DLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-TVKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGK 418 (552)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-ceEEEEEeCCccccCCCCcHHHHHHhhccccccCc
Confidence 34455899999999999999999999999999999999998732 211 111122222111 0
Q ss_pred hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 122 DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 122 ~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
......++++.+++.... ....+..|||||+||++||++++.+|+++|+|||+...+
T Consensus 419 ~~~~~~~~l~~~~l~~~~-~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD 475 (552)
T TIGR03719 419 REVPSRAYVGRFNFKGSD-QQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLD 475 (552)
T ss_pred chHHHHHHHHhCCCChhH-hcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Confidence 122345688889885321 223389999999999999999999999999999987543
No 301
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.78 E-value=1.5e-18 Score=171.09 Aligned_cols=116 Identities=15% Similarity=0.131 Sum_probs=85.1
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC-----------Ccccccccchh------h--
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM-----------TLPFAANIDIR------D-- 122 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~-----------~~~~~~~~~~~------~-- 122 (268)
....+.+|++++|+||||||||||+++|+|..+|++|.|++ +.+.... ..+..+++... .
T Consensus 338 vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~ 416 (635)
T PRK11147 338 FSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKLEVAYFDQHRAELDPEKTVMDNLAEGKQEVMVNGR 416 (635)
T ss_pred cEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCcEEEEEeCcccccCCCCCHHHHHHhhcccccccch
Confidence 34458999999999999999999999999999999999987 4321111 11111221110 1
Q ss_pred HHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 123 TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 123 ~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
...+.++++.+++.... ....+..||||||||++||++++.+|+++|+|||+...+
T Consensus 417 ~~~~~~~l~~~~l~~~~-~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD 472 (635)
T PRK11147 417 PRHVLGYLQDFLFHPKR-AMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLD 472 (635)
T ss_pred HHHHHHHHHhcCCCHHH-HhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 23456678888885321 223389999999999999999999999999999987543
No 302
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=2.4e-18 Score=151.01 Aligned_cols=146 Identities=13% Similarity=0.024 Sum_probs=92.8
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhccc--C---cccEEEEecccCCC------------CCcc---------c
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQ--S---RNIRGYVMNLDPAV------------MTLP---------F 114 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~--~---~~g~i~i~~~~~~~------------~~~~---------~ 114 (268)
.....+.+|++++|+|+||||||||+++|+|+.. + ++|.|+++|.+... ..++ .
T Consensus 23 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv 102 (252)
T PRK14255 23 GIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFPFSI 102 (252)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCccCCCcH
Confidence 3344588999999999999999999999999864 4 58999998865421 0001 1
Q ss_pred ccccch----h---h----HHHHHHHHHHcCCCCC--CCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhh
Q 024413 115 AANIDI----R---D----TIRYKEVMKQFNLGPN--GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFT 181 (268)
Q Consensus 115 ~~~~~~----~---~----~~~~~~~l~~~~l~~~--~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~ 181 (268)
.+++.. . . ...+.+.++.+++... ......+..||+||+||++||++++.+|+++|+|||+..-+..
T Consensus 103 ~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~ 182 (252)
T PRK14255 103 YENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPI 182 (252)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHH
Confidence 111110 0 0 1123445566665321 1123447899999999999999999999999999998754322
Q ss_pred hhhHHHHHHHHHhccCCcEEEEEEcC
Q 024413 182 WSASGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 182 ~~~~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
.......+...+... ..+|+..+|.
T Consensus 183 ~~~~l~~~l~~~~~~-~tii~vsH~~ 207 (252)
T PRK14255 183 SSTQIENMLLELRDQ-YTIILVTHSM 207 (252)
T ss_pred HHHHHHHHHHHHHhC-CEEEEEECCH
Confidence 222333333333332 4455544554
No 303
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.78 E-value=1.4e-18 Score=172.60 Aligned_cols=118 Identities=14% Similarity=0.043 Sum_probs=86.2
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC----------CCcc---------cccccch-
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV----------MTLP---------FAANIDI- 120 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~----------~~~~---------~~~~~~~- 120 (268)
.....+++|++++|+|+||||||||++.|+|++.|++|.|+++|.+... ..++ ..+|+..
T Consensus 471 ~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~ 550 (686)
T TIGR03797 471 DVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGG 550 (686)
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcC
Confidence 3345589999999999999999999999999999999999999976531 1111 1223322
Q ss_pred --hhHHHHHHHHHHcCCCCC---------CCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc
Q 024413 121 --RDTIRYKEVMKQFNLGPN---------GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE 178 (268)
Q Consensus 121 --~~~~~~~~~l~~~~l~~~---------~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~ 178 (268)
.+..++.++++..++.+. ......-..||||||||++||||+..+|+++|+|||+..-
T Consensus 551 ~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~L 619 (686)
T TIGR03797 551 APLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSAL 619 (686)
T ss_pred CCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCC
Confidence 123445556666665421 1111113569999999999999999999999999998754
No 304
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.78 E-value=9.2e-19 Score=172.74 Aligned_cols=116 Identities=15% Similarity=0.130 Sum_probs=81.5
Q ss_pred cccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC----------Cc---------ccccccchh--
Q 024413 63 INFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM----------TL---------PFAANIDIR-- 121 (268)
Q Consensus 63 ~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~----------~~---------~~~~~~~~~-- 121 (268)
...+++|+.++|+|+||||||||++.|+|++.|+.|.|.++|.|...- .+ +..+|+...
T Consensus 493 sL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p 572 (709)
T COG2274 493 SLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNP 572 (709)
T ss_pred eEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCC
Confidence 445899999999999999999999999999999999999999875311 11 112222211
Q ss_pred --hHHHHHH---------HHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc
Q 024413 122 --DTIRYKE---------VMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE 178 (268)
Q Consensus 122 --~~~~~~~---------~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~ 178 (268)
....+.+ .++.+-.+-+..+...-..||||||||++||||+..+|+++|||||+..-
T Consensus 573 ~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaL 640 (709)
T COG2274 573 EATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSAL 640 (709)
T ss_pred CCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCccccc
Confidence 1112222 22222222111222224569999999999999999999999999998754
No 305
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=2.7e-18 Score=150.85 Aligned_cols=145 Identities=12% Similarity=0.016 Sum_probs=92.9
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccC-----cccEEEEecccCCCC------------Cccc---------c
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQS-----RNIRGYVMNLDPAVM------------TLPF---------A 115 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~-----~~g~i~i~~~~~~~~------------~~~~---------~ 115 (268)
....+.+|++++|+|+||||||||+++|+|+..+ +.|.+.++|.+.... .++. .
T Consensus 25 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 104 (253)
T PRK14261 25 ITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPKSIY 104 (253)
T ss_pred eEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCccCcccHH
Confidence 3445899999999999999999999999998752 489999988653210 0000 0
Q ss_pred cccch-------hh----HHHHHHHHHHcCCCCC--CCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhh
Q 024413 116 ANIDI-------RD----TIRYKEVMKQFNLGPN--GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTW 182 (268)
Q Consensus 116 ~~~~~-------~~----~~~~~~~l~~~~l~~~--~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~ 182 (268)
+++.. .. ...+.++++.+++... ......+..||+||+||+++|++++.+|+++|+|||...-+...
T Consensus 105 eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~ 184 (253)
T PRK14261 105 ENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIA 184 (253)
T ss_pred HHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 11111 00 1234556677776431 11234488999999999999999999999999999987543222
Q ss_pred hhHHHHHHHHHhccCCcEEEEEEcC
Q 024413 183 SASGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 183 ~~~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
......+...+.. ...+++..+|.
T Consensus 185 ~~~l~~~l~~~~~-~~tvii~sh~~ 208 (253)
T PRK14261 185 TAKIEDLIEDLKK-EYTVIIVTHNM 208 (253)
T ss_pred HHHHHHHHHHHhh-CceEEEEEcCH
Confidence 2222333333333 24455544554
No 306
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.78 E-value=2.1e-18 Score=153.30 Aligned_cols=145 Identities=9% Similarity=0.032 Sum_probs=91.3
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhccc-----CcccEEEEecccCCC------------CCcc---------cc
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQ-----SRNIRGYVMNLDPAV------------MTLP---------FA 115 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~-----~~~g~i~i~~~~~~~------------~~~~---------~~ 115 (268)
....+++|++++|+|+||||||||+++|+|... |++|.+.++|.+... ..++ ..
T Consensus 43 vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~ 122 (271)
T PRK14238 43 INLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPKSIY 122 (271)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCccccccHH
Confidence 344589999999999999999999999999987 689999998865420 0001 11
Q ss_pred cccch-------hhH----HHHHHHHHHcCCCCC--CCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhh
Q 024413 116 ANIDI-------RDT----IRYKEVMKQFNLGPN--GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTW 182 (268)
Q Consensus 116 ~~~~~-------~~~----~~~~~~l~~~~l~~~--~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~ 182 (268)
+++.. .+. ..+.+.++.+++... ......+..|||||+||++||++++.+|+++|+|||...-+...
T Consensus 123 eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~ 202 (271)
T PRK14238 123 DNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPIS 202 (271)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHH
Confidence 11110 011 112334445543211 11223478899999999999999999999999999987543222
Q ss_pred hhHHHHHHHHHhccCCcEEEEEEcC
Q 024413 183 SASGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 183 ~~~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
......+...+.. ...+++..+|.
T Consensus 203 ~~~l~~~l~~~~~-~~tiiivsH~~ 226 (271)
T PRK14238 203 TLKVEELVQELKK-DYSIIIVTHNM 226 (271)
T ss_pred HHHHHHHHHHHHc-CCEEEEEEcCH
Confidence 2223333334433 23444444444
No 307
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.78 E-value=2.2e-18 Score=153.91 Aligned_cols=118 Identities=20% Similarity=0.143 Sum_probs=79.9
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEeccc------CCCCCcccccccchh---hHHHHHHHHH
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLD------PAVMTLPFAANIDIR---DTIRYKEVMK 131 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~------~~~~~~~~~~~~~~~---~~~~~~~~l~ 131 (268)
.....+.+|++++|+|+||||||||+++|+|.++|++|.|++++.- +.....+..+++... ....+.+.++
T Consensus 55 ~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~ 134 (282)
T cd03291 55 NINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVK 134 (282)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCcccccccCHHHHhhcccccCHHHHHHHHH
Confidence 3445589999999999999999999999999999999988876521 100011222222110 1112233344
Q ss_pred HcCCCCC---------CCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc
Q 024413 132 QFNLGPN---------GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE 178 (268)
Q Consensus 132 ~~~l~~~---------~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~ 178 (268)
.+++... ......+..||+||+||+++|++++.+|+++|+|||...-
T Consensus 135 ~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gL 190 (282)
T cd03291 135 ACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYL 190 (282)
T ss_pred HhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccC
Confidence 4443211 1111225689999999999999999999999999998754
No 308
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=1.7e-18 Score=166.90 Aligned_cols=117 Identities=15% Similarity=0.110 Sum_probs=83.2
Q ss_pred cccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCC-------------------cccccccch---
Q 024413 63 INFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT-------------------LPFAANIDI--- 120 (268)
Q Consensus 63 ~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~-------------------~~~~~~~~~--- 120 (268)
...+++|++++++||+|+||||+.+.|.++|.|++|.|.++|.|...-+ -+..+|+..
T Consensus 488 sfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~ 567 (716)
T KOG0058|consen 488 SFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLD 567 (716)
T ss_pred eeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCC
Confidence 4458999999999999999999999999999999999999998753211 111222211
Q ss_pred ----hhH------HHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 121 ----RDT------IRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 121 ----~~~------~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
.+. ..+.+.+..|--+-+-..-..-.+||||||||++|||||..+|.|+||||++-..+
T Consensus 568 ~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALD 636 (716)
T KOG0058|consen 568 NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALD 636 (716)
T ss_pred CCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcc
Confidence 111 12233333333222222222234799999999999999999999999999987654
No 309
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.77 E-value=1.9e-18 Score=156.92 Aligned_cols=132 Identities=17% Similarity=0.124 Sum_probs=99.2
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCC----------------ccc---ccccch-
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT----------------LPF---AANIDI- 120 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~----------------~~~---~~~~~~- 120 (268)
......+.|+.++|+|.+|||||||-.+|.+++.++ |.|.+.|.+..... -|| .+.+++
T Consensus 305 ~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~ 383 (534)
T COG4172 305 GISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVG 383 (534)
T ss_pred cceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHH
Confidence 344458999999999999999999999999999887 99999998754210 011 111111
Q ss_pred -----------------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhh
Q 024413 121 -----------------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWS 183 (268)
Q Consensus 121 -----------------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~ 183 (268)
.-..++.+.++++||+++...++ |+++|||||||++||||++.+|+++++|||+-..+.+-.
T Consensus 384 qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RY-PhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQ 462 (534)
T COG4172 384 QIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRY-PHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQ 462 (534)
T ss_pred HHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcC-CcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHH
Confidence 11346788999999999866665 999999999999999999999999999999986654433
Q ss_pred hHHHHHHHHHh
Q 024413 184 ASGAIITEAFA 194 (268)
Q Consensus 184 ~~~~~i~~~~~ 194 (268)
...-.+.+.++
T Consensus 463 aQvv~LLr~LQ 473 (534)
T COG4172 463 AQVLDLLRDLQ 473 (534)
T ss_pred HHHHHHHHHHH
Confidence 33333444443
No 310
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.77 E-value=1.4e-18 Score=154.78 Aligned_cols=116 Identities=14% Similarity=0.106 Sum_probs=85.7
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC----------CCcc---------cccccch-
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV----------MTLP---------FAANIDI- 120 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~----------~~~~---------~~~~~~~- 120 (268)
.....+++|++++|+|+||||||||+++|+|+.. .+|.|+++|.+... ..++ ..+++..
T Consensus 22 ~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~tv~~nl~~~ 100 (275)
T cd03289 22 NISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPY 100 (275)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchhhHHHHhhhc
Confidence 3445689999999999999999999999999997 78999999976421 0011 1122211
Q ss_pred --hhHHHHHHHHHHcCCCCCCCcccchhh-----------hcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 121 --RDTIRYKEVMKQFNLGPNGGILTSLNL-----------FTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 121 --~~~~~~~~~l~~~~l~~~~~~~~~~~~-----------lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
.....+.+.++.++|....... +.. ||+||+||+++|||++.+|+++|+|||+..-+
T Consensus 101 ~~~~~~~~~~~l~~~gL~~~~~~~--p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD 170 (275)
T cd03289 101 GKWSDEEIWKVAEEVGLKSVIEQF--PGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLD 170 (275)
T ss_pred cCCCHHHHHHHHHHcCCHHHHHhC--cccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCC
Confidence 1223456677888886432222 443 99999999999999999999999999987543
No 311
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.77 E-value=7.6e-18 Score=137.73 Aligned_cols=148 Identities=14% Similarity=0.040 Sum_probs=100.1
Q ss_pred CCcccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCC---------------------------
Q 024413 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT--------------------------- 111 (268)
Q Consensus 59 ~~~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~--------------------------- 111 (268)
.....+...+|++.+|+|.+|||||||++||++...|+.|.+.+...+-..-.
T Consensus 22 c~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~DG 101 (258)
T COG4107 22 CRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDG 101 (258)
T ss_pred ccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCcccc
Confidence 34556668999999999999999999999999999999999988664321100
Q ss_pred ----cccccccc-----h------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 024413 112 ----LPFAANID-----I------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQ 176 (268)
Q Consensus 112 ----~~~~~~~~-----~------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~ 176 (268)
+....|+. + .-+....++++.+.++...- ...|.++||||+||+.|||.+.+.|.++|+|||+=
T Consensus 102 LRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~Ri-DD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTG 180 (258)
T COG4107 102 LRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRI-DDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTG 180 (258)
T ss_pred ceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccc-cCcccccchHHHHHHHHHHHhccCCceEEecCCCC
Confidence 00011110 0 11345667899998886533 33489999999999999999999999999999965
Q ss_pred cchhhhhh-HHHHHHHHHhccCCcEEEEEEcC
Q 024413 177 IEIFTWSA-SGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 177 ~~~~~~~~-~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
....+-.. ....+........-.+|++.+|-
T Consensus 181 GLDVSVQARLLDllrgLv~~l~la~viVTHDl 212 (258)
T COG4107 181 GLDVSVQARLLDLLRGLVRELGLAVVIVTHDL 212 (258)
T ss_pred CcchhhHHHHHHHHHHHHHhcCceEEEEechh
Confidence 43322222 22222222233333556666664
No 312
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.77 E-value=2.3e-18 Score=168.09 Aligned_cols=118 Identities=14% Similarity=0.013 Sum_probs=85.2
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC----------CCc---------ccccccch-
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV----------MTL---------PFAANIDI- 120 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~----------~~~---------~~~~~~~~- 120 (268)
.....+++|++++|+|+||||||||++.|+|+++|++|.|+++|.+... ..+ +..+|+..
T Consensus 361 ~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~ 440 (582)
T PRK11176 361 NINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYA 440 (582)
T ss_pred CceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcC
Confidence 4445589999999999999999999999999999999999999876421 111 11223322
Q ss_pred ----hhHHHHHHHHHHcCCCCC---------CCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc
Q 024413 121 ----RDTIRYKEVMKQFNLGPN---------GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE 178 (268)
Q Consensus 121 ----~~~~~~~~~l~~~~l~~~---------~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~ 178 (268)
.+..++.+.++..++.+. -.....-..||||||||++||||+..+|+++|+|||+..-
T Consensus 441 ~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaL 511 (582)
T PRK11176 441 RTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSAL 511 (582)
T ss_pred CCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccC
Confidence 123445555555554321 1111113569999999999999999999999999998754
No 313
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.77 E-value=2.4e-18 Score=168.27 Aligned_cols=118 Identities=12% Similarity=0.041 Sum_probs=85.7
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC----------CCccc---------ccccchh
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV----------MTLPF---------AANIDIR 121 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~----------~~~~~---------~~~~~~~ 121 (268)
.....+++|++++|+|++|||||||++.|+|++.|++|.|.++|.+... ..+++ .+|+...
T Consensus 359 ~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~ 438 (592)
T PRK10790 359 NINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLG 438 (592)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhC
Confidence 3445589999999999999999999999999999999999999976421 01111 1222211
Q ss_pred ---hHHHHHHHHHHcCCCCC---------CCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc
Q 024413 122 ---DTIRYKEVMKQFNLGPN---------GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE 178 (268)
Q Consensus 122 ---~~~~~~~~l~~~~l~~~---------~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~ 178 (268)
+..++.++++.+++... ......-..||||||||++||||+..+|+++|+|||+..-
T Consensus 439 ~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~L 507 (592)
T PRK10790 439 RDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANI 507 (592)
T ss_pred CCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccC
Confidence 23445566666665321 1111123569999999999999999999999999998754
No 314
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.77 E-value=2.4e-18 Score=168.19 Aligned_cols=117 Identities=12% Similarity=0.086 Sum_probs=82.3
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC----------CCc---------ccccccchh
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV----------MTL---------PFAANIDIR 121 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~----------~~~---------~~~~~~~~~ 121 (268)
.....+++|++++|+|++|||||||++.|+|++ |++|.|.++|.+... ..+ +..+|+...
T Consensus 368 ~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g 446 (588)
T PRK11174 368 PLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLG 446 (588)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcC
Confidence 334458999999999999999999999999999 999999999876421 111 122232221
Q ss_pred ----hHHHHHHHHHHcCCCC---------CCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc
Q 024413 122 ----DTIRYKEVMKQFNLGP---------NGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE 178 (268)
Q Consensus 122 ----~~~~~~~~l~~~~l~~---------~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~ 178 (268)
...++.+.++..++.+ +-.....-..||||||||++||||+..+|+++|+|||+..-
T Consensus 447 ~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaL 516 (588)
T PRK11174 447 NPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASL 516 (588)
T ss_pred CCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCC
Confidence 1234444444444321 11111113569999999999999999999999999998754
No 315
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.77 E-value=4.1e-18 Score=165.56 Aligned_cols=118 Identities=11% Similarity=0.046 Sum_probs=88.0
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC----------Ccccc---------cccc-h
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM----------TLPFA---------ANID-I 120 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~----------~~~~~---------~~~~-~ 120 (268)
.....+++|++++|+||||||||||++.|+|++.|++|.|+++|.+.... .+++. ++.. -
T Consensus 360 ~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~ 439 (555)
T TIGR01194 360 PIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGEH 439 (555)
T ss_pred cceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhcccccc
Confidence 34455899999999999999999999999999999999999998765321 01111 1110 0
Q ss_pred hhHHHHHHHHHHcCCCCCCCcc----cchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc
Q 024413 121 RDTIRYKEVMKQFNLGPNGGIL----TSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE 178 (268)
Q Consensus 121 ~~~~~~~~~l~~~~l~~~~~~~----~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~ 178 (268)
.....+.++++.+++.+..... .....||||||||++||||+..+|+++|+|||+..-
T Consensus 440 ~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~L 501 (555)
T TIGR01194 440 ASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQ 501 (555)
T ss_pred hhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCC
Confidence 1233466778888887532211 114679999999999999999999999999998754
No 316
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.77 E-value=4.3e-18 Score=150.08 Aligned_cols=116 Identities=12% Similarity=0.084 Sum_probs=80.4
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC----------CCcc---------cccccchh
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV----------MTLP---------FAANIDIR 121 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~----------~~~~---------~~~~~~~~ 121 (268)
.....+++|++++|+|+||||||||+++|+|++++++|.+++++.+... ..++ ..+++...
T Consensus 39 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~ 118 (257)
T cd03288 39 HVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPE 118 (257)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCcccccHHHHhcCcC
Confidence 3344589999999999999999999999999999999999998865321 0000 01111110
Q ss_pred ---hHHHHHHHHHHcCC-----------CCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc
Q 024413 122 ---DTIRYKEVMKQFNL-----------GPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE 178 (268)
Q Consensus 122 ---~~~~~~~~l~~~~l-----------~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~ 178 (268)
....+.++++.+++ ..... ..+..||+||+||+++|+|++.+|+++|+|||+..-
T Consensus 119 ~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~--~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gL 187 (257)
T cd03288 119 CKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVT--EGGENFSVGQRQLFCLARAFVRKSSILIMDEATASI 187 (257)
T ss_pred CCCCHHHHHHHHHHhCcHHHHhhcccccCcEec--cCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCC
Confidence 11122233333322 22111 225789999999999999999999999999998754
No 317
>PLN03073 ABC transporter F family; Provisional
Probab=99.77 E-value=3.5e-18 Score=169.82 Aligned_cols=141 Identities=12% Similarity=0.028 Sum_probs=95.8
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCC-------CCCccccccc--c------hhhHHHH
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-------VMTLPFAANI--D------IRDTIRY 126 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~-------~~~~~~~~~~--~------~~~~~~~ 126 (268)
....+.+|++++|+||||||||||+++|+|+.+|++|.+++.+.... ...+....+. . ......+
T Consensus 528 vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~i 607 (718)
T PLN03073 528 LNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKL 607 (718)
T ss_pred cEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEeccccccCCcchhHHHHHHHhcCCCCHHHH
Confidence 34458999999999999999999999999999999999886542100 0011111110 0 0123456
Q ss_pred HHHHHHcCCCC-CCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEE
Q 024413 127 KEVMKQFNLGP-NGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVV 205 (268)
Q Consensus 127 ~~~l~~~~l~~-~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vv 205 (268)
.++++.+++.. .... .+..||||||||++||++++.+|+++|+|||+...+.. ....+.+.+......+|+..+
T Consensus 608 ~~~L~~~gl~~~~~~~--~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~---s~~~l~~~L~~~~gtvIivSH 682 (718)
T PLN03073 608 RAHLGSFGVTGNLALQ--PMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLD---AVEALIQGLVLFQGGVLMVSH 682 (718)
T ss_pred HHHHHHCCCChHHhcC--CccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHH---HHHHHHHHHHHcCCEEEEEEC
Confidence 77899999863 2232 38899999999999999999999999999998864322 122334444332345555555
Q ss_pred cC
Q 024413 206 DT 207 (268)
Q Consensus 206 D~ 207 (268)
|.
T Consensus 683 d~ 684 (718)
T PLN03073 683 DE 684 (718)
T ss_pred CH
Confidence 54
No 318
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=4.4e-18 Score=149.24 Aligned_cols=118 Identities=17% Similarity=0.103 Sum_probs=83.6
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhccc-----CcccEEEEecccCCCC------------Ccc---------cc
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQ-----SRNIRGYVMNLDPAVM------------TLP---------FA 115 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~-----~~~g~i~i~~~~~~~~------------~~~---------~~ 115 (268)
....+.+|++++|+|+||||||||+++|+|+.. +++|.++++|.+.... .++ ..
T Consensus 22 ~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~t~~ 101 (250)
T PRK14266 22 VNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIF 101 (250)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCccCcchHH
Confidence 344588999999999999999999999999864 3889999988764210 000 01
Q ss_pred cccch----h-------hHHHHHHHHHHcCCCCC--CCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 116 ANIDI----R-------DTIRYKEVMKQFNLGPN--GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 116 ~~~~~----~-------~~~~~~~~l~~~~l~~~--~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
+++.. . ....+.++++.+++... ......+..||+||+||++||++++.+|+++|+|||...-+
T Consensus 102 ~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD 178 (250)
T PRK14266 102 DNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALD 178 (250)
T ss_pred HHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCC
Confidence 11110 0 01234556777777431 11223478899999999999999999999999999987543
No 319
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=4.8e-18 Score=138.76 Aligned_cols=94 Identities=16% Similarity=0.162 Sum_probs=73.0
Q ss_pred cccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcc
Q 024413 63 INFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGIL 142 (268)
Q Consensus 63 ~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 142 (268)
...+.+|++++|+|+||+|||||+++|+|.+.+..|.+++++.+..... ... ....+
T Consensus 19 ~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~--------~~~------~~~~i--------- 75 (157)
T cd00267 19 SLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLP--------LEE------LRRRI--------- 75 (157)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCC--------HHH------HHhce---------
Confidence 3447899999999999999999999999999999999999886542110 000 00000
Q ss_pred cchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 143 TSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 143 ~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
..+.+||+||+||++++++++.+|+++++|||....+
T Consensus 76 ~~~~qlS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD 112 (157)
T cd00267 76 GYVPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLD 112 (157)
T ss_pred EEEeeCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCC
Confidence 1123399999999999999999999999999987543
No 320
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.76 E-value=5e-18 Score=165.20 Aligned_cols=119 Identities=15% Similarity=0.080 Sum_probs=85.3
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCC----------CCCcc---------cccccch-
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA----------VMTLP---------FAANIDI- 120 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~----------~~~~~---------~~~~~~~- 120 (268)
.....+++|++++|+|+||||||||++.|+|++.|++|.|+++|.+.. ...++ ..+|+..
T Consensus 350 ~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~ 429 (571)
T TIGR02203 350 SISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYG 429 (571)
T ss_pred CeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcC
Confidence 344558999999999999999999999999999999999999986532 11111 1222221
Q ss_pred ----hhHHHHHHHHHHcCCCCC-------CC--cccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 121 ----RDTIRYKEVMKQFNLGPN-------GG--ILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 121 ----~~~~~~~~~l~~~~l~~~-------~~--~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
.+..++.++++..++.+. .. ....-..||||||||++|||++..+|+++|+|||+..-+
T Consensus 430 ~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD 501 (571)
T TIGR02203 430 RTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALD 501 (571)
T ss_pred CCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCC
Confidence 123445556666655321 01 111124699999999999999999999999999987543
No 321
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.76 E-value=3.1e-18 Score=170.83 Aligned_cols=143 Identities=10% Similarity=0.015 Sum_probs=94.6
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC----------CCc---------ccccccchh
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV----------MTL---------PFAANIDIR 121 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~----------~~~---------~~~~~~~~~ 121 (268)
.....+++|+.++|+|++|||||||++.|+|++.|++|.|+++|.+... ..+ +..+|+...
T Consensus 497 ~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~ 576 (710)
T TIGR03796 497 NFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLW 576 (710)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCC
Confidence 3445589999999999999999999999999999999999999876421 111 122233221
Q ss_pred ----hHHHHHHHHHHcCCCCC---------CCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHH
Q 024413 122 ----DTIRYKEVMKQFNLGPN---------GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAI 188 (268)
Q Consensus 122 ----~~~~~~~~l~~~~l~~~---------~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~ 188 (268)
+..++.+.++..++.+. ......-..||||||||++||||+..+|+++|+|||+-.-+. .....
T Consensus 577 ~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~---~te~~ 653 (710)
T TIGR03796 577 DPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDP---ETEKI 653 (710)
T ss_pred CCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCH---HHHHH
Confidence 23344455555554321 111112356999999999999999999999999999875431 22334
Q ss_pred HHHHHhccCCcEEEEEEc
Q 024413 189 ITEAFASTFPTVVTYVVD 206 (268)
Q Consensus 189 i~~~~~~~~~d~vv~vvD 206 (268)
+.+.+......+|+..|+
T Consensus 654 i~~~l~~~~~T~IiitHr 671 (710)
T TIGR03796 654 IDDNLRRRGCTCIIVAHR 671 (710)
T ss_pred HHHHHHhcCCEEEEEecC
Confidence 444444333344444443
No 322
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.76 E-value=4.5e-18 Score=164.24 Aligned_cols=117 Identities=15% Similarity=0.064 Sum_probs=85.3
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC----------C---------cccccccchh-
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM----------T---------LPFAANIDIR- 121 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~----------~---------~~~~~~~~~~- 121 (268)
....+++|++++|+|++|||||||++.|+|+++|++|.|.++|.+...- . .+..+|+...
T Consensus 341 i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~ 420 (529)
T TIGR02857 341 VSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLAR 420 (529)
T ss_pred eeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccC
Confidence 3445899999999999999999999999999999999999998764210 1 1112222211
Q ss_pred ---hHHHHHHHHHHcCCCCCC---------CcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc
Q 024413 122 ---DTIRYKEVMKQFNLGPNG---------GILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE 178 (268)
Q Consensus 122 ---~~~~~~~~l~~~~l~~~~---------~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~ 178 (268)
....+.+.++..++.+.- ........||||||||+++|||+..+|+++|+|||+-.-
T Consensus 421 ~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~l 489 (529)
T TIGR02857 421 PDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHL 489 (529)
T ss_pred CCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCccccc
Confidence 223455666666654210 111124579999999999999999999999999998754
No 323
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=9e-18 Score=153.14 Aligned_cols=119 Identities=15% Similarity=0.147 Sum_probs=85.1
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhccc-----CcccEEEEecccCCCC------------Cc---------cc
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQ-----SRNIRGYVMNLDPAVM------------TL---------PF 114 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~-----~~~g~i~i~~~~~~~~------------~~---------~~ 114 (268)
.....+++|++++|+|+||||||||+++|+|+.. |++|.|.++|.+.... .+ +.
T Consensus 100 ~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~~ti 179 (329)
T PRK14257 100 DLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSI 179 (329)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCCCcH
Confidence 3345589999999999999999999999999986 4689999988875210 01 11
Q ss_pred ccccchh-------hHH----HHHHHHHHcCCCCC--CCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 115 AANIDIR-------DTI----RYKEVMKQFNLGPN--GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 115 ~~~~~~~-------~~~----~~~~~l~~~~l~~~--~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
.+|+... +.. .+.++++.+++... ......+..|||||+||++||||++.+|+++|+|||...-+
T Consensus 180 ~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD 257 (329)
T PRK14257 180 FDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALD 257 (329)
T ss_pred HHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCC
Confidence 1122110 011 14556777776421 12234478899999999999999999999999999987543
No 324
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.76 E-value=5.5e-18 Score=164.26 Aligned_cols=116 Identities=16% Similarity=0.074 Sum_probs=82.0
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC----------CCc---------ccccccchh
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV----------MTL---------PFAANIDIR 121 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~----------~~~---------~~~~~~~~~ 121 (268)
.....+++|++++|+|+||||||||+++|+|.++|++|.+.++|.+... ..+ +..+|+...
T Consensus 336 ~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~ 415 (544)
T TIGR01842 336 GISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARF 415 (544)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhcc
Confidence 4445589999999999999999999999999999999999998865321 001 112222110
Q ss_pred ----hHHHH---------HHHHHHc--CCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc
Q 024413 122 ----DTIRY---------KEVMKQF--NLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE 178 (268)
Q Consensus 122 ----~~~~~---------~~~l~~~--~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~ 178 (268)
....+ .++++.+ |++... ......||||||||+++|||+..+|+++|+|||+..-
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~--~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~L 485 (544)
T TIGR01842 416 GENADPEKIIEAAKLAGVHELILRLPDGYDTVI--GPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNL 485 (544)
T ss_pred CCCCCHHHHHHHHHHhChHHHHHhCcccccccc--CCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccc
Confidence 11122 2334444 223222 2225679999999999999999999999999998754
No 325
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.76 E-value=5.4e-18 Score=166.59 Aligned_cols=147 Identities=14% Similarity=0.138 Sum_probs=100.8
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCc---ccEEEEecccCC-----------------CCCcccccccch
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSR---NIRGYVMNLDPA-----------------VMTLPFAANIDI 120 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~---~g~i~i~~~~~~-----------------~~~~~~~~~~~~ 120 (268)
.....+++|++++|+||||||||||+++|+|...+. +|.+.++|.+.. ...++..+++..
T Consensus 43 ~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f 122 (617)
T TIGR00955 43 NVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMF 122 (617)
T ss_pred CCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHHHHHHH
Confidence 344458999999999999999999999999998774 789999887532 111222222211
Q ss_pred -------------hhHHHHHHHHHHcCCCCCCCccc----chhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhh
Q 024413 121 -------------RDTIRYKEVMKQFNLGPNGGILT----SLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWS 183 (268)
Q Consensus 121 -------------~~~~~~~~~l~~~~l~~~~~~~~----~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~ 183 (268)
....+++++++.++|....+..- ..+.||||||||++||+++..+|+++++|||+...+....
T Consensus 123 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~ 202 (617)
T TIGR00955 123 QAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMA 202 (617)
T ss_pred HHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHH
Confidence 11235788999999986544441 1246999999999999999999999999999876543323
Q ss_pred hHHHHHHHHHhccCCcEEEEEEcC
Q 024413 184 ASGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 184 ~~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
.......+.++.....+|+..++.
T Consensus 203 ~~l~~~L~~l~~~g~tvi~~~hq~ 226 (617)
T TIGR00955 203 YSVVQVLKGLAQKGKTIICTIHQP 226 (617)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCC
Confidence 333333334433334455555554
No 326
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.76 E-value=3.9e-18 Score=138.85 Aligned_cols=145 Identities=15% Similarity=0.102 Sum_probs=100.4
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCC-------------------------cccc
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT-------------------------LPFA 115 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~-------------------------~~~~ 115 (268)
...+.++.|+++++=||+|+||||||++|.+.|.+++|.|.+.-..-..+- +|..
T Consensus 29 ~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV 108 (235)
T COG4778 29 NVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRV 108 (235)
T ss_pred ceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHhccCc
Confidence 445568999999999999999999999999999999999999654322110 0000
Q ss_pred cccch-------------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhh
Q 024413 116 ANIDI-------------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTW 182 (268)
Q Consensus 116 ~~~~~-------------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~ 182 (268)
..+++ ....++..++..+++.+..-.. .|.++|||++||+.|||.++.+.+++|+|||+...+.+.
T Consensus 109 ~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~L-aPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~N 187 (235)
T COG4778 109 SALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSL-APATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATN 187 (235)
T ss_pred chHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcC-CCcccCCchheehhhhhhhhccCceEEecCCcccccccc
Confidence 01110 1234566788888887654333 389999999999999999999999999999998655444
Q ss_pred hhHHHHHHHHHhccCCcEEEEEEc
Q 024413 183 SASGAIITEAFASTFPTVVTYVVD 206 (268)
Q Consensus 183 ~~~~~~i~~~~~~~~~d~vv~vvD 206 (268)
....-.++...+...+.+|=..+|
T Consensus 188 r~vVveli~e~Ka~GaAlvGIFHD 211 (235)
T COG4778 188 RAVVVELIREAKARGAALVGIFHD 211 (235)
T ss_pred hHHHHHHHHHHHhcCceEEEeecc
Confidence 333333444333343444433344
No 327
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.76 E-value=6.4e-18 Score=165.24 Aligned_cols=119 Identities=10% Similarity=0.054 Sum_probs=83.3
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC----------CCcc---------cccccchh
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV----------MTLP---------FAANIDIR 121 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~----------~~~~---------~~~~~~~~ 121 (268)
.....+++|++++|+|+||||||||++.|+|+++|++|.++++|.+... ..++ ..+|+...
T Consensus 353 ~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~ 432 (588)
T PRK13657 353 DVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVG 432 (588)
T ss_pred ceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcC
Confidence 3444589999999999999999999999999999999999999875421 1111 12222211
Q ss_pred ----hHHHHHHHHHHcCCCC---------CCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 122 ----DTIRYKEVMKQFNLGP---------NGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 122 ----~~~~~~~~l~~~~l~~---------~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
...++.+.++..++.. +.........|||||+||++||||+..+|+++|+|||+..-+
T Consensus 433 ~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD 503 (588)
T PRK13657 433 RPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALD 503 (588)
T ss_pred CCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCC
Confidence 1233444444444321 111111235699999999999999999999999999987543
No 328
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.75 E-value=5.1e-18 Score=165.50 Aligned_cols=118 Identities=13% Similarity=0.046 Sum_probs=87.6
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC----------CCcc---------cccccch-
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV----------MTLP---------FAANIDI- 120 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~----------~~~~---------~~~~~~~- 120 (268)
.....+++|++++|+||||||||||+++|+|++.|++|.|+++|.+... ..++ ..+|+..
T Consensus 358 ~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~ 437 (574)
T PRK11160 358 GLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLA 437 (574)
T ss_pred cceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcC
Confidence 3445589999999999999999999999999999999999999876421 0111 1222221
Q ss_pred ---hhHHHHHHHHHHcCCCCCCCc--------ccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc
Q 024413 121 ---RDTIRYKEVMKQFNLGPNGGI--------LTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE 178 (268)
Q Consensus 121 ---~~~~~~~~~l~~~~l~~~~~~--------~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~ 178 (268)
.....+.+.++..++.+.... ......||||||||++||||+..+|+++|+|||+..-
T Consensus 438 ~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~l 506 (574)
T PRK11160 438 APNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGL 506 (574)
T ss_pred CCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 123456667777777542111 1124569999999999999999999999999998754
No 329
>COG1159 Era GTPase [General function prediction only]
Probab=99.75 E-value=3.6e-18 Score=150.12 Aligned_cols=125 Identities=28% Similarity=0.381 Sum_probs=92.1
Q ss_pred CCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccchhh
Q 024413 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (268)
Q Consensus 68 ~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 147 (268)
+...++|+|+|++|||||+|.|.|..-. .++..++++...++. ..
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~Kis------------IvS~k~QTTR~~I~G------------------I~----- 49 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKIS------------IVSPKPQTTRNRIRG------------------IV----- 49 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceE------------eecCCcchhhhheeE------------------EE-----
Confidence 3467899999999999999999997655 456666664322211 11
Q ss_pred hcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhc--cCCcEEEEEEcCCCcCCchhhHHHHHHHHH
Q 024413 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS--TFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (268)
Q Consensus 148 lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~--~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~ 225 (268)
...+.+++|+||||++++ .......+.+.... ..+|+|+|++|+...+.+.+.+. ++
T Consensus 50 --------------t~~~~QiIfvDTPGih~p--k~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~i-----l~ 108 (298)
T COG1159 50 --------------TTDNAQIIFVDTPGIHKP--KHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFI-----LE 108 (298)
T ss_pred --------------EcCCceEEEEeCCCCCCc--chHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHH-----HH
Confidence 023678999999999998 44555555555433 45899999999999888877442 45
Q ss_pred HHHhhCCCceeeecCCCcCChhh
Q 024413 226 ILYKTRLPLVLAFNKTDVAQHEF 248 (268)
Q Consensus 226 ~l~~~~~p~ilV~NK~Dl~~~~~ 248 (268)
.+.....|+++++||+|...++.
T Consensus 109 ~lk~~~~pvil~iNKID~~~~~~ 131 (298)
T COG1159 109 QLKKTKTPVILVVNKIDKVKPKT 131 (298)
T ss_pred HHhhcCCCeEEEEEccccCCcHH
Confidence 55566789999999999998776
No 330
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.75 E-value=8.8e-18 Score=167.58 Aligned_cols=119 Identities=13% Similarity=0.017 Sum_probs=85.5
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC----------CCc---------ccccccchh
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV----------MTL---------PFAANIDIR 121 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~----------~~~---------~~~~~~~~~ 121 (268)
.....+++|++++|+||||||||||++.|+|+++|++|.|+++|.+... ..+ +..+|+...
T Consensus 499 ~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g 578 (711)
T TIGR00958 499 GLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYG 578 (711)
T ss_pred CceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcC
Confidence 3445589999999999999999999999999999999999999876321 111 112222211
Q ss_pred ----hHHHHHHHHHHcCCCCC---------CCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 122 ----DTIRYKEVMKQFNLGPN---------GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 122 ----~~~~~~~~l~~~~l~~~---------~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
+...+.++++..++.+. ......-..||||||||++||||+..+|+++|+|||+..-+
T Consensus 579 ~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD 649 (711)
T TIGR00958 579 LTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALD 649 (711)
T ss_pred CCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccC
Confidence 23345555655554321 11111135699999999999999999999999999987543
No 331
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.75 E-value=7.3e-18 Score=168.13 Aligned_cols=118 Identities=15% Similarity=0.085 Sum_probs=84.4
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC----------CCcc---------cccccchh
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV----------MTLP---------FAANIDIR 121 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~----------~~~~---------~~~~~~~~ 121 (268)
.....+++|+.++|+|+||||||||++.|+|++.|++|.|+++|.+... ..++ ..+|+...
T Consensus 492 ~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~ 571 (708)
T TIGR01193 492 DISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLG 571 (708)
T ss_pred ceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhcc
Confidence 4445589999999999999999999999999999999999999976321 1111 12222221
Q ss_pred -----hHHHHHHHHHHcCCCC---------CCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc
Q 024413 122 -----DTIRYKEVMKQFNLGP---------NGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE 178 (268)
Q Consensus 122 -----~~~~~~~~l~~~~l~~---------~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~ 178 (268)
+..++.+.++..++.+ +.........||||||||++||||+..+|+++|+|||+..-
T Consensus 572 ~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~L 642 (708)
T TIGR01193 572 AKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNL 642 (708)
T ss_pred CCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccC
Confidence 1233444555544421 11111224569999999999999999999999999998754
No 332
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.75 E-value=9.2e-18 Score=165.98 Aligned_cols=144 Identities=9% Similarity=-0.027 Sum_probs=95.9
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEeccc--------CCCCCcccccccch-----------h
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLD--------PAVMTLPFAANIDI-----------R 121 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~--------~~~~~~~~~~~~~~-----------~ 121 (268)
.....+++|++++|+||||||||||+++|+|++++++|.+.+++.. +.....+..+++.. .
T Consensus 470 ~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~ 549 (659)
T TIGR00954 470 SLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGL 549 (659)
T ss_pred cceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCC
Confidence 3444589999999999999999999999999999999987664321 11111122223221 1
Q ss_pred hHHHHHHHHHHcCCCCCCCc-------ccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHh
Q 024413 122 DTIRYKEVMKQFNLGPNGGI-------LTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFA 194 (268)
Q Consensus 122 ~~~~~~~~l~~~~l~~~~~~-------~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~ 194 (268)
....+.++++.+++...... ......||||||||++||||+..+|+++|+|||+..-+. .....+.+.++
T Consensus 550 ~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~---~~~~~l~~~l~ 626 (659)
T TIGR00954 550 SDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSV---DVEGYMYRLCR 626 (659)
T ss_pred CHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCH---HHHHHHHHHHH
Confidence 13456677888888643221 112468999999999999999999999999999875431 22333444444
Q ss_pred ccCCcEEEEEEcC
Q 024413 195 STFPTVVTYVVDT 207 (268)
Q Consensus 195 ~~~~d~vv~vvD~ 207 (268)
.....+++..+|.
T Consensus 627 ~~~~tvI~isH~~ 639 (659)
T TIGR00954 627 EFGITLFSVSHRK 639 (659)
T ss_pred HcCCEEEEEeCch
Confidence 3334555555554
No 333
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.75 E-value=1.5e-17 Score=162.15 Aligned_cols=119 Identities=13% Similarity=0.059 Sum_probs=84.6
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC----------CCc---------ccccccch-
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV----------MTL---------PFAANIDI- 120 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~----------~~~---------~~~~~~~~- 120 (268)
.....+++|++++|+|+||||||||++.|+|+++|.+|.++++|.+... ..+ +..+|+..
T Consensus 358 ~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~ 437 (576)
T TIGR02204 358 GLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYG 437 (576)
T ss_pred ceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcC
Confidence 3345589999999999999999999999999999999999999865321 111 11222222
Q ss_pred ---hhHHHHHHHHHHcCCCC---------CCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 121 ---RDTIRYKEVMKQFNLGP---------NGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 121 ---~~~~~~~~~l~~~~l~~---------~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
.+..++.+.++..++.. ..........|||||+||+++|||+..+|+++|+|||+..-+
T Consensus 438 ~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD 508 (576)
T TIGR02204 438 RPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALD 508 (576)
T ss_pred CCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccC
Confidence 12234555555555431 111112245699999999999999999999999999987543
No 334
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=2e-17 Score=146.43 Aligned_cols=119 Identities=11% Similarity=0.065 Sum_probs=83.0
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccC-----cccEEEEecccCCC--------------CCcc--------
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQS-----RNIRGYVMNLDPAV--------------MTLP-------- 113 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~-----~~g~i~i~~~~~~~--------------~~~~-------- 113 (268)
.....+++|++++|+|+||||||||+++|+|...| ++|.+++++.+... ...+
T Consensus 34 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 113 (265)
T PRK14252 34 NINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPK 113 (265)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCCcCCcc
Confidence 34455899999999999999999999999999874 78999997654210 0001
Q ss_pred -cccccchh-----------hHHHHHHHHHHcCCCCC--CCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 114 -FAANIDIR-----------DTIRYKEVMKQFNLGPN--GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 114 -~~~~~~~~-----------~~~~~~~~l~~~~l~~~--~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
..+++... ....+.++++.+++... ......+..||+||+||++||++++.+|+++|+|||...-+
T Consensus 114 tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD 193 (265)
T PRK14252 114 SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALD 193 (265)
T ss_pred hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCC
Confidence 11111110 01234456666666421 11223378899999999999999999999999999987543
No 335
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.74 E-value=1.6e-17 Score=161.95 Aligned_cols=118 Identities=12% Similarity=0.086 Sum_probs=83.5
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC----------CCc---------ccccccchh
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV----------MTL---------PFAANIDIR 121 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~----------~~~---------~~~~~~~~~ 121 (268)
.....+++|++++|+||||||||||+++|+|+++|++|.++++|.+... ..+ +..+|+...
T Consensus 333 ~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~ 412 (569)
T PRK10789 333 NVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALG 412 (569)
T ss_pred CeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcC
Confidence 3445589999999999999999999999999999999999998876321 011 112222211
Q ss_pred ----hHHHHHHHHHHcCCCCC---------CCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc
Q 024413 122 ----DTIRYKEVMKQFNLGPN---------GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE 178 (268)
Q Consensus 122 ----~~~~~~~~l~~~~l~~~---------~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~ 178 (268)
....+.+.++..++... .........||||||||+++|||+..+|+++|+|||+..-
T Consensus 413 ~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~L 482 (569)
T PRK10789 413 RPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAV 482 (569)
T ss_pred CCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccC
Confidence 12334444555444311 0111124569999999999999999999999999998754
No 336
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.74 E-value=2.4e-17 Score=135.82 Aligned_cols=117 Identities=13% Similarity=0.120 Sum_probs=90.5
Q ss_pred CCcccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCccc----------------ccccch--
Q 024413 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPF----------------AANIDI-- 120 (268)
Q Consensus 59 ~~~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~----------------~~~~~~-- 120 (268)
..+..+..++|..++|+|.||||||||.++|+|...|++|++.+++......+..+ .+.+.+
T Consensus 29 V~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGq 108 (267)
T COG4167 29 VKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQ 108 (267)
T ss_pred ccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhhhhh
Confidence 33445568899999999999999999999999999999999999998654332111 111111
Q ss_pred ---------------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 024413 121 ---------------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQ 176 (268)
Q Consensus 121 ---------------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~ 176 (268)
....++-+.+..+||-|.-.-. +++.||.||||||++|||++.+|+++|.||+-.
T Consensus 109 iLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~-~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~ 178 (267)
T COG4167 109 ILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANY-YPHMLAPGQKQRVALARALILRPKIIIADEALA 178 (267)
T ss_pred HhcchhhhcccCChHHHHHHHHHHHHHhccCcccccc-chhhcCchhHHHHHHHHHHhcCCcEEEehhhhh
Confidence 1134566778899998753333 399999999999999999999999999999943
No 337
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.74 E-value=1.3e-17 Score=166.10 Aligned_cols=118 Identities=15% Similarity=0.104 Sum_probs=84.0
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC----------CCc---------ccccccchh
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV----------MTL---------PFAANIDIR 121 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~----------~~~---------~~~~~~~~~ 121 (268)
.....+++|++++|+|+||||||||++.|+|++.|++|.|.++|.+... ..+ +..+|+...
T Consensus 483 ~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~ 562 (694)
T TIGR03375 483 NVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALG 562 (694)
T ss_pred eeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCC
Confidence 3344589999999999999999999999999999999999999876421 011 112222211
Q ss_pred ----hHHHHHHHHHHcCCCC---------CCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc
Q 024413 122 ----DTIRYKEVMKQFNLGP---------NGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE 178 (268)
Q Consensus 122 ----~~~~~~~~l~~~~l~~---------~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~ 178 (268)
+..++.+.++..++.+ +-.....-..||||||||++||||+..+|+++|+|||+..-
T Consensus 563 ~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~L 632 (694)
T TIGR03375 563 APYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAM 632 (694)
T ss_pred CCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Confidence 2333444455444421 11111123569999999999999999999999999998754
No 338
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.74 E-value=1.5e-17 Score=175.58 Aligned_cols=144 Identities=12% Similarity=0.091 Sum_probs=99.5
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhccc---CcccEEEEecccCCC------C----------Ccccccccch--
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQ---SRNIRGYVMNLDPAV------M----------TLPFAANIDI-- 120 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~---~~~g~i~i~~~~~~~------~----------~~~~~~~~~~-- 120 (268)
....+++|++++|+||||||||||+++|+|... +++|.++++|.+... . ..+..+++..
T Consensus 782 vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a 861 (1394)
T TIGR00956 782 VDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSA 861 (1394)
T ss_pred CEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceeeecccccCCCCCCHHHHHHHHH
Confidence 344589999999999999999999999999987 678999999876421 0 1111222211
Q ss_pred --h---------hHHHHHHHHHHcCCCCCCCcccchh----hhcHHHHHHHHHHHHHhcCCC-EEEEeCCCCcchhhhhh
Q 024413 121 --R---------DTIRYKEVMKQFNLGPNGGILTSLN----LFTTKFDEVISLIERRADHLD-YVLVDTPGQIEIFTWSA 184 (268)
Q Consensus 121 --~---------~~~~~~~~l~~~~l~~~~~~~~~~~----~lS~G~~qr~~ia~al~~~~~-illlDePG~~~~~~~~~ 184 (268)
+ ...+++++++.++|....+.. +. .||||||||++||++++.+|+ ++|+|||+...+.....
T Consensus 862 ~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~--v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~ 939 (1394)
T TIGR00956 862 YLRQPKSVSKSEKMEYVEEVIKLLEMESYADAV--VGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAW 939 (1394)
T ss_pred HhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCe--eCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHH
Confidence 0 123467889999997654444 44 799999999999999999997 99999998754422223
Q ss_pred HHHHHHHHHhccCCcEEEEEEcC
Q 024413 185 SGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 185 ~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
....+.+.++.....+|+..|+.
T Consensus 940 ~i~~~L~~la~~g~tvI~t~H~~ 962 (1394)
T TIGR00956 940 SICKLMRKLADHGQAILCTIHQP 962 (1394)
T ss_pred HHHHHHHHHHHcCCEEEEEecCC
Confidence 33333333433334555555554
No 339
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.74 E-value=6.6e-18 Score=171.00 Aligned_cols=147 Identities=13% Similarity=0.038 Sum_probs=94.0
Q ss_pred cccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCC-------------------cccccccchhh-
Q 024413 63 INFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT-------------------LPFAANIDIRD- 122 (268)
Q Consensus 63 ~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~-------------------~~~~~~~~~~~- 122 (268)
...++.|+.++|+|++||||||++..|.+++.|++|.|+++|.|...-+ .+..+|+....
T Consensus 373 sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~ 452 (1228)
T KOG0055|consen 373 SLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKP 452 (1228)
T ss_pred EEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCC
Confidence 3448999999999999999999999999999999999999998754211 11222222111
Q ss_pred ---HHHHHHHHHHcCC---------CCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch-hhhhhHHHHH
Q 024413 123 ---TIRYKEVMKQFNL---------GPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI-FTWSASGAII 189 (268)
Q Consensus 123 ---~~~~~~~l~~~~l---------~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~-~~~~~~~~~i 189 (268)
..++.+..+..+. +-.-.....--+||||||||++||||++.+|+++|||||+-..+ .++......+
T Consensus 453 dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~AL 532 (1228)
T KOG0055|consen 453 DATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEAL 532 (1228)
T ss_pred cccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHH
Confidence 2222222222111 10001111123499999999999999999999999999987543 2222222222
Q ss_pred HHHHhc-------------cCCcEEEEEEcCCC
Q 024413 190 TEAFAS-------------TFPTVVTYVVDTPR 209 (268)
Q Consensus 190 ~~~~~~-------------~~~d~vv~vvD~~~ 209 (268)
.+.... ..+|.|+++.++.-
T Consensus 533 d~~~~grTTivVaHRLStIrnaD~I~v~~~G~I 565 (1228)
T KOG0055|consen 533 DKASKGRTTIVVAHRLSTIRNADKIAVMEEGKI 565 (1228)
T ss_pred HHhhcCCeEEEEeeehhhhhccCEEEEEECCEE
Confidence 222111 13788888888753
No 340
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.74 E-value=2.2e-17 Score=163.11 Aligned_cols=144 Identities=19% Similarity=0.176 Sum_probs=99.5
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC--------------C----------ccccc
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM--------------T----------LPFAA 116 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~--------------~----------~~~~~ 116 (268)
.....+++|++++|+|+||||||||+++|+|..++++|.+.++|.+.... . .+..+
T Consensus 26 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e 105 (648)
T PRK10535 26 GISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQ 105 (648)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCCCCHHH
Confidence 33445899999999999999999999999999999999999988763210 0 01111
Q ss_pred ccch----------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHH
Q 024413 117 NIDI----------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASG 186 (268)
Q Consensus 117 ~~~~----------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~ 186 (268)
++.. ....++.++++.+++....+.. +..||+||+||++||++++.+|+++|+|||....+.......
T Consensus 106 nl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~--~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l 183 (648)
T PRK10535 106 NVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQ--PSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEV 183 (648)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCC--cccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHH
Confidence 1110 1123466788899987654444 889999999999999999999999999999875432222333
Q ss_pred HHHHHHHhccCCcEEEEEEc
Q 024413 187 AIITEAFASTFPTVVTYVVD 206 (268)
Q Consensus 187 ~~i~~~~~~~~~d~vv~vvD 206 (268)
..+.+.+......+++..++
T Consensus 184 ~~ll~~l~~~g~tilivsH~ 203 (648)
T PRK10535 184 MAILHQLRDRGHTVIIVTHD 203 (648)
T ss_pred HHHHHHHHhcCCEEEEECCC
Confidence 33334443322344444344
No 341
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.74 E-value=1.5e-17 Score=162.81 Aligned_cols=140 Identities=15% Similarity=0.142 Sum_probs=101.8
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccC---cccEEEEecccCC-----------------CCCcccccccch-----
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQS---RNIRGYVMNLDPA-----------------VMTLPFAANIDI----- 120 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~---~~g~i~i~~~~~~-----------------~~~~~~~~~~~~----- 120 (268)
.++|++.+|+||+|||||||+|+|+|.... .+|.|.++|.... ...++..+++..
T Consensus 53 ~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lr 132 (613)
T KOG0061|consen 53 AKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLR 132 (613)
T ss_pred EecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhc
Confidence 789999999999999999999999999874 6899999884321 223333333211
Q ss_pred --------hhHHHHHHHHHHcCCCCCCCcccch-----hhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHH
Q 024413 121 --------RDTIRYKEVMKQFNLGPNGGILTSL-----NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGA 187 (268)
Q Consensus 121 --------~~~~~~~~~l~~~~l~~~~~~~~~~-----~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~ 187 (268)
....+++++++.++|....+.. + +.+|||||+|++||..++.+|.++++|||+-..+.......-
T Consensus 133 lp~~~~~~~k~~~V~~vi~~LgL~~~~~t~--ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv 210 (613)
T KOG0061|consen 133 LPSSLSKEEKRERVEEVISELGLEKCADTL--IGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVV 210 (613)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCChhhccce--ecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHH
Confidence 2356789999999998554444 4 469999999999999999999999999998765433333333
Q ss_pred HHHHHHhccCCcEEEEEEcC
Q 024413 188 IITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 188 ~i~~~~~~~~~d~vv~vvD~ 207 (268)
.+.+.++.....+|+.+|=.
T Consensus 211 ~~Lk~lA~~grtVi~tIHQP 230 (613)
T KOG0061|consen 211 QLLKRLARSGRTVICTIHQP 230 (613)
T ss_pred HHHHHHHhCCCEEEEEEeCC
Confidence 44444555545555555543
No 342
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=9e-18 Score=157.33 Aligned_cols=142 Identities=18% Similarity=0.079 Sum_probs=95.5
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC----------CCccccccc---ch--------
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV----------MTLPFAANI---DI-------- 120 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~----------~~~~~~~~~---~~-------- 120 (268)
..+.+++|+.++|+|+|||||||++|+|.++.. .+|+|+|+|++... ..+|+...+ ++
T Consensus 371 vsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn 449 (591)
T KOG0057|consen 371 VSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGN 449 (591)
T ss_pred eeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCC
Confidence 344589999999999999999999999999999 99999999987531 123332211 00
Q ss_pred --hhHHHHHHHHHHcCCCCC------C---CcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHH
Q 024413 121 --RDTIRYKEVMKQFNLGPN------G---GILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAII 189 (268)
Q Consensus 121 --~~~~~~~~~l~~~~l~~~------~---~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i 189 (268)
-...++-++.+.+++.+- + .....-..||||||||+++|||+..+|+++++|||+-..+ ...+..+
T Consensus 450 ~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD---~~TE~~i 526 (591)
T KOG0057|consen 450 PSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALD---SETEREI 526 (591)
T ss_pred CCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccc---hhhHHHH
Confidence 112345555666666321 1 0111234699999999999999999999999999997543 1223344
Q ss_pred HHHHhc--cCCcEEEEEEcC
Q 024413 190 TEAFAS--TFPTVVTYVVDT 207 (268)
Q Consensus 190 ~~~~~~--~~~d~vv~vvD~ 207 (268)
.+.+.. ....+|+.+++-
T Consensus 527 ~~~i~~~~~~rTvI~IvH~l 546 (591)
T KOG0057|consen 527 LDMIMDVMSGRTVIMIVHRL 546 (591)
T ss_pred HHHHHHhcCCCeEEEEEecc
Confidence 444333 234555555555
No 343
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.73 E-value=2.3e-17 Score=160.61 Aligned_cols=116 Identities=12% Similarity=0.082 Sum_probs=81.6
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC----------CCcc---------cccccchh
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV----------MTLP---------FAANIDIR 121 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~----------~~~~---------~~~~~~~~ 121 (268)
.....+++|++++|+||+|||||||++.|.+++.|++|.|.++|.|... ..++ ..+|+...
T Consensus 347 ~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g 426 (567)
T COG1132 347 DISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALG 426 (567)
T ss_pred CceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcC
Confidence 3445589999999999999999999999999999999999998876431 1111 12222211
Q ss_pred ----hHHHHHHH---------HHHc--CCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc
Q 024413 122 ----DTIRYKEV---------MKQF--NLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE 178 (268)
Q Consensus 122 ----~~~~~~~~---------l~~~--~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~ 178 (268)
....+.+. ++.+ |++..-+ ..-..||||||||++||||+..+|+++++|||+..-
T Consensus 427 ~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vg--e~G~~LSgGQrQrlaiARall~~~~ILILDEaTSal 496 (567)
T COG1132 427 RPDATDEEIEEALKLANAHEFIANLPDGYDTIVG--ERGVNLSGGQRQRLAIARALLRNPPILILDEATSAL 496 (567)
T ss_pred CCCCCHHHHHHHHHHhChHHHHHhCcccccceec--CCCccCCHHHHHHHHHHHHHhcCCCEEEEecccccc
Confidence 11223333 3333 2222111 124579999999999999999999999999998753
No 344
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.73 E-value=2.4e-17 Score=161.19 Aligned_cols=118 Identities=14% Similarity=0.075 Sum_probs=80.9
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC----------CCc---------ccccccchh
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV----------MTL---------PFAANIDIR 121 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~----------~~~---------~~~~~~~~~ 121 (268)
.....+++|++++|+|+||||||||++.|+|+++|++|.++++|.+... ..+ +..+|+...
T Consensus 353 ~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~ 432 (585)
T TIGR01192 353 DVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLG 432 (585)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcC
Confidence 3344589999999999999999999999999999999999998875321 011 111122111
Q ss_pred ----hHHHHHHHHHHcCCCC---------CCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc
Q 024413 122 ----DTIRYKEVMKQFNLGP---------NGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE 178 (268)
Q Consensus 122 ----~~~~~~~~l~~~~l~~---------~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~ 178 (268)
....+.+.++..++.. +.........||||||||++||||+..+|+++|+|||+..-
T Consensus 433 ~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~L 502 (585)
T TIGR01192 433 REGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSAL 502 (585)
T ss_pred CCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCC
Confidence 1122222233222211 11111225679999999999999999999999999998754
No 345
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.73 E-value=3.5e-17 Score=156.86 Aligned_cols=142 Identities=15% Similarity=0.074 Sum_probs=103.6
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCc-----------ccccccch-h---hHHH
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTL-----------PFAANIDI-R---DTIR 125 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~-----------~~~~~~~~-~---~~~~ 125 (268)
...+.+.+|.+++|+||||+||||||+.|+|...+.+|.|.+... ....++ +..+.+.- . ....
T Consensus 340 ~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~ 418 (530)
T COG0488 340 DLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-VKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQE 418 (530)
T ss_pred CceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc-eEEEEEEehhhhcCccCcHHHHHHhhCccccHHH
Confidence 344458899999999999999999999999999998887765332 111111 11111100 0 1456
Q ss_pred HHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEE
Q 024413 126 YKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVV 205 (268)
Q Consensus 126 ~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vv 205 (268)
+...+..|++..... .+.++.||||||.|+.+|+.++.+|.++|||||+-+.+ ......+.+.+....+.+|++.|
T Consensus 419 ~r~~L~~f~F~~~~~-~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLD---i~s~~aLe~aL~~f~Gtvl~VSH 494 (530)
T COG0488 419 VRAYLGRFGFTGEDQ-EKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLD---IESLEALEEALLDFEGTVLLVSH 494 (530)
T ss_pred HHHHHHHcCCChHHH-hCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCC---HHHHHHHHHHHHhCCCeEEEEeC
Confidence 778899999987655 34499999999999999999999999999999998643 23444566666666678888777
Q ss_pred cC
Q 024413 206 DT 207 (268)
Q Consensus 206 D~ 207 (268)
|-
T Consensus 495 Dr 496 (530)
T COG0488 495 DR 496 (530)
T ss_pred CH
Confidence 76
No 346
>PLN03140 ABC transporter G family member; Provisional
Probab=99.73 E-value=3e-17 Score=173.38 Aligned_cols=146 Identities=16% Similarity=0.117 Sum_probs=98.7
Q ss_pred cccccCCeEEEEEecCCCCHHHHHHHHHhcccC--cccEEEEecccCCC-----------------CCcccccccch---
Q 024413 63 INFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQS--RNIRGYVMNLDPAV-----------------MTLPFAANIDI--- 120 (268)
Q Consensus 63 ~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~--~~g~i~i~~~~~~~-----------------~~~~~~~~~~~--- 120 (268)
...+++|++++|+||||||||||+++|+|...+ .+|.+.++|.+... ..++..+++..
T Consensus 900 s~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~ 979 (1470)
T PLN03140 900 TGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAF 979 (1470)
T ss_pred EEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHH
Confidence 344889999999999999999999999998763 67889888764320 11122222211
Q ss_pred -h---------hHHHHHHHHHHcCCCCCCCccc---chhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHH
Q 024413 121 -R---------DTIRYKEVMKQFNLGPNGGILT---SLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGA 187 (268)
Q Consensus 121 -~---------~~~~~~~~l~~~~l~~~~~~~~---~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~ 187 (268)
+ ....++++++.++|....+..- .++.||||||||++||++++.+|+++|+|||+...+........
T Consensus 980 lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~ 1059 (1470)
T PLN03140 980 LRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1059 (1470)
T ss_pred hCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Confidence 0 1224678999999976544331 13689999999999999999999999999998754422222333
Q ss_pred HHHHHHhccCCcEEEEEEcCC
Q 024413 188 IITEAFASTFPTVVTYVVDTP 208 (268)
Q Consensus 188 ~i~~~~~~~~~d~vv~vvD~~ 208 (268)
.+.+.++.....+|+..|+.+
T Consensus 1060 ~~L~~l~~~g~tVI~t~Hq~~ 1080 (1470)
T PLN03140 1060 RTVRNTVDTGRTVVCTIHQPS 1080 (1470)
T ss_pred HHHHHHHHCCCEEEEEeCCCC
Confidence 333344444445666666653
No 347
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.72 E-value=3e-17 Score=163.41 Aligned_cols=118 Identities=15% Similarity=0.051 Sum_probs=83.2
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC----------Ccc---------cccccchh
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM----------TLP---------FAANIDIR 121 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~----------~~~---------~~~~~~~~ 121 (268)
.....+++|++++|+|+||||||||+++|+|++.|++|.|+++|.+...- .++ ..+|+...
T Consensus 475 ~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~ 554 (694)
T TIGR01846 475 NLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALC 554 (694)
T ss_pred cceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcC
Confidence 34455899999999999999999999999999999999999999764210 111 11222211
Q ss_pred ----hHHHHHHHHHHcCCCC---------CCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc
Q 024413 122 ----DTIRYKEVMKQFNLGP---------NGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE 178 (268)
Q Consensus 122 ----~~~~~~~~l~~~~l~~---------~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~ 178 (268)
....+.+.++..++.. +-........||||||||+++|||+..+|+++|+|||+..-
T Consensus 555 ~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~L 624 (694)
T TIGR01846 555 NPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSAL 624 (694)
T ss_pred CCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCC
Confidence 1223334444443321 11111224679999999999999999999999999998754
No 348
>PLN03073 ABC transporter F family; Provisional
Probab=99.72 E-value=4.4e-17 Score=161.98 Aligned_cols=116 Identities=17% Similarity=0.141 Sum_probs=79.3
Q ss_pred cccccCCeEEEEEecCCCCHHHHHHHHHhcc---cCcccEEEEecccCCCCCccccc-----------------------
Q 024413 63 INFKRKPVIIIVVGMAGSGKTTFMHRLVCHT---QSRNIRGYVMNLDPAVMTLPFAA----------------------- 116 (268)
Q Consensus 63 ~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~---~~~~g~i~i~~~~~~~~~~~~~~----------------------- 116 (268)
...+..|++++|+|+|||||||||++|+|.. .|++|.|.+..+.......+..+
T Consensus 197 sl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~ 276 (718)
T PLN03073 197 SVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQ 276 (718)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4447899999999999999999999999864 57788887655432111110000
Q ss_pred ----------------cc--ch--------------------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHH
Q 024413 117 ----------------NI--DI--------------------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISL 158 (268)
Q Consensus 117 ----------------~~--~~--------------------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~i 158 (268)
+. .. ....++.+++..+++.... ....+..|||||+||++|
T Consensus 277 ~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~-~~~~~~~LSgG~k~rv~L 355 (718)
T PLN03073 277 RELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEM-QVKATKTFSGGWRMRIAL 355 (718)
T ss_pred HHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChHH-HhCchhhCCHHHHHHHHH
Confidence 00 00 0012344456666664221 223388999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCcch
Q 024413 159 IERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 159 a~al~~~~~illlDePG~~~~ 179 (268)
|++++.+|+++|+|||+...+
T Consensus 356 A~aL~~~p~lLlLDEPt~~LD 376 (718)
T PLN03073 356 ARALFIEPDLLLLDEPTNHLD 376 (718)
T ss_pred HHHHhcCCCEEEEECCCCCCC
Confidence 999999999999999987543
No 349
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.72 E-value=5.9e-17 Score=129.58 Aligned_cols=145 Identities=11% Similarity=0.005 Sum_probs=107.1
Q ss_pred cccccCCeEEEEEecCCCCHHHHHHHHHhcccCc---ccEEEEecccCC------------------CCCcccccccc--
Q 024413 63 INFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSR---NIRGYVMNLDPA------------------VMTLPFAANID-- 119 (268)
Q Consensus 63 ~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~---~g~i~i~~~~~~------------------~~~~~~~~~~~-- 119 (268)
...+.+|+++.++||+|||||||+.-+.|.+.+. .|++.+++++.. ++.+....|+-
T Consensus 22 n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fA 101 (213)
T COG4136 22 NFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFA 101 (213)
T ss_pred eEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeecccccccccccccceEEe
Confidence 3348899999999999999999999999998663 688888776432 12222233321
Q ss_pred ------hh-hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch-hhhhhHHHHHHH
Q 024413 120 ------IR-DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI-FTWSASGAIITE 191 (268)
Q Consensus 120 ------~~-~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~-~~~~~~~~~i~~ 191 (268)
.+ .+..++..++..+|....+.. |.+||||||-|+++.|++...|+.+++|||.-..+ .-+...+.++..
T Consensus 102 lp~~~KG~aRr~~a~aAL~~~gL~g~f~~d--P~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs 179 (213)
T COG4136 102 LPATLKGNARRNAANAALERSGLDGAFHQD--PATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFS 179 (213)
T ss_pred cCcccccHHHHhhHHHHHHHhccchhhhcC--hhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHH
Confidence 12 233466789999999777766 99999999999999999999999999999976432 234455666666
Q ss_pred HHhccCCcEEEEEEcCCC
Q 024413 192 AFASTFPTVVTYVVDTPR 209 (268)
Q Consensus 192 ~~~~~~~d~vv~vvD~~~ 209 (268)
.++....-.|++.+|...
T Consensus 180 ~~r~agiPtv~VTHD~~D 197 (213)
T COG4136 180 EVRAAGIPTVQVTHDLQD 197 (213)
T ss_pred HHHhcCCCeEEEeccccc
Confidence 666665677777777643
No 350
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.70 E-value=1e-16 Score=169.76 Aligned_cols=119 Identities=14% Similarity=0.030 Sum_probs=83.8
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccC---------------------------------------------
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQS--------------------------------------------- 95 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~--------------------------------------------- 95 (268)
.....+++|+.++|+|++|||||||++.|.|++.|
T Consensus 1186 ~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1265 (1466)
T PTZ00265 1186 DLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGG 1265 (1466)
T ss_pred CeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccc
Confidence 33455899999999999999999999999999998
Q ss_pred ---------cccEEEEecccCCC----------CCccc---------ccccchh----hHHHHHHHHHHcCCCCC-----
Q 024413 96 ---------RNIRGYVMNLDPAV----------MTLPF---------AANIDIR----DTIRYKEVMKQFNLGPN----- 138 (268)
Q Consensus 96 ---------~~g~i~i~~~~~~~----------~~~~~---------~~~~~~~----~~~~~~~~l~~~~l~~~----- 138 (268)
++|.|+++|.+... ..+++ .+|+... ....+.+.++..++...
T Consensus 1266 ~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP 1345 (1466)
T PTZ00265 1266 SGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLP 1345 (1466)
T ss_pred cccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCc
Confidence 58999999987531 11122 2222211 12334444554444221
Q ss_pred ----CCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 139 ----GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 139 ----~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
-.+...-..||||||||++||||++.+|+++|||||+...+
T Consensus 1346 ~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD 1390 (1466)
T PTZ00265 1346 NKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLD 1390 (1466)
T ss_pred cccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccC
Confidence 11111235699999999999999999999999999987543
No 351
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1.7e-16 Score=134.86 Aligned_cols=134 Identities=14% Similarity=0.010 Sum_probs=93.5
Q ss_pred ccccCCeEEEEEecCCCCHHHHHHHHHhcc--cCcccEEEEecccCCCCC------------------cccccccch---
Q 024413 64 NFKRKPVIIIVVGMAGSGKTTFMHRLVCHT--QSRNIRGYVMNLDPAVMT------------------LPFAANIDI--- 120 (268)
Q Consensus 64 ~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~--~~~~g~i~i~~~~~~~~~------------------~~~~~~~~~--- 120 (268)
..+++|++.+|+||||||||||.+.|+|.- ..++|.|.++|.|..... +++-.+.+.
T Consensus 25 L~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~ 104 (251)
T COG0396 25 LTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRA 104 (251)
T ss_pred eeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHH
Confidence 348999999999999999999999999986 678999999999865321 111110000
Q ss_pred -------------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHH
Q 024413 121 -------------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGA 187 (268)
Q Consensus 121 -------------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~ 187 (268)
.....+.+.++.+++++..-.+.--..||||+|+|..|+..++.+|++.|||||--.-+-..-....
T Consensus 105 a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~ 184 (251)
T COG0396 105 AMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVA 184 (251)
T ss_pred HHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHH
Confidence 1133566788899998732222223469999999999999999999999999995433212223334
Q ss_pred HHHHHHhccC
Q 024413 188 IITEAFASTF 197 (268)
Q Consensus 188 ~i~~~~~~~~ 197 (268)
..+..++...
T Consensus 185 ~~i~~lr~~~ 194 (251)
T COG0396 185 EGINALREEG 194 (251)
T ss_pred HHHHHHhcCC
Confidence 4455555543
No 352
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.70 E-value=7e-17 Score=170.58 Aligned_cols=147 Identities=12% Similarity=0.036 Sum_probs=98.8
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcc----cCcccEEEEecccCCC-------------------CCcccccc
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHT----QSRNIRGYVMNLDPAV-------------------MTLPFAAN 117 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~----~~~~g~i~i~~~~~~~-------------------~~~~~~~~ 117 (268)
.....+++|++++|+||||||||||+|+|+|.. .+.+|.|.++|.+... ..++..++
T Consensus 79 ~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~ 158 (1394)
T TIGR00956 79 PMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGET 158 (1394)
T ss_pred CCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHH
Confidence 344458999999999999999999999999986 4689999998865310 01111121
Q ss_pred cch----------------hh-HHH-HHHHHHHcCCCCCCCcc---cchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 024413 118 IDI----------------RD-TIR-YKEVMKQFNLGPNGGIL---TSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQ 176 (268)
Q Consensus 118 ~~~----------------~~-~~~-~~~~l~~~~l~~~~~~~---~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~ 176 (268)
+.. .+ ..+ .+++++.++|....+.. ..++.||||||||++||++++.+|+++++|||+.
T Consensus 159 l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTs 238 (1394)
T TIGR00956 159 LDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATR 238 (1394)
T ss_pred HHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCC
Confidence 111 00 112 34578999997654432 2367899999999999999999999999999987
Q ss_pred cchhhhhhHHHHHHHHHhcc-CCcEEEEEEcC
Q 024413 177 IEIFTWSASGAIITEAFAST-FPTVVTYVVDT 207 (268)
Q Consensus 177 ~~~~~~~~~~~~i~~~~~~~-~~d~vv~vvD~ 207 (268)
..+...........+.++.. ...+|+.+++.
T Consensus 239 gLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~ 270 (1394)
T TIGR00956 239 GLDSATALEFIRALKTSANILDTTPLVAIYQC 270 (1394)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCEEEEEecCC
Confidence 65433333333334444332 34555555554
No 353
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.70 E-value=8.5e-17 Score=170.33 Aligned_cols=119 Identities=11% Similarity=0.005 Sum_probs=82.2
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEec-ccCCC----------CCccc---------ccccch
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMN-LDPAV----------MTLPF---------AANIDI 120 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~-~~~~~----------~~~~~---------~~~~~~ 120 (268)
.....+++|++++|+||||||||||+++|+|++.|++|.|++++ .+... ..+++ .+|+..
T Consensus 403 ~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~ 482 (1466)
T PTZ00265 403 DLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKY 482 (1466)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHh
Confidence 34455899999999999999999999999999999999999954 43210 00111 111111
Q ss_pred h-------------------------------------------------------------hHHHHHHHHHHcCCCCC-
Q 024413 121 R-------------------------------------------------------------DTIRYKEVMKQFNLGPN- 138 (268)
Q Consensus 121 ~-------------------------------------------------------------~~~~~~~~l~~~~l~~~- 138 (268)
. ....+.++++.+++...
T Consensus 483 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i 562 (1466)
T PTZ00265 483 SLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFV 562 (1466)
T ss_pred cCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHH
Confidence 0 01233444555554321
Q ss_pred -----C---CcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 139 -----G---GILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 139 -----~---~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
+ ........||||||||++||||++.+|+++|+|||+..-+
T Consensus 563 ~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD 611 (1466)
T PTZ00265 563 SALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLD 611 (1466)
T ss_pred HhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccC
Confidence 0 0122367899999999999999999999999999987543
No 354
>PLN03232 ABC transporter C family member; Provisional
Probab=99.69 E-value=1.5e-16 Score=169.38 Aligned_cols=118 Identities=17% Similarity=0.175 Sum_probs=85.6
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC----------Ccc---------cccccchh
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM----------TLP---------FAANIDIR 121 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~----------~~~---------~~~~~~~~ 121 (268)
.....+++|++++|+|++|||||||+++|.|++.|++|.|.++|.|...- .+| ..+|++..
T Consensus 1254 ~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~ 1333 (1495)
T PLN03232 1254 GLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPF 1333 (1495)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCC
Confidence 33445899999999999999999999999999999999999999875311 111 22233221
Q ss_pred ---hHHHHHHHHHHcCCCCC---------CCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc
Q 024413 122 ---DTIRYKEVMKQFNLGPN---------GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE 178 (268)
Q Consensus 122 ---~~~~~~~~l~~~~l~~~---------~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~ 178 (268)
....+.+.++..++.+. ......-..||||||||++||||+..+|+++|+|||+..-
T Consensus 1334 ~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaL 1402 (1495)
T PLN03232 1334 SEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASV 1402 (1495)
T ss_pred CCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccC
Confidence 22345555555555321 1111113469999999999999999999999999998753
No 355
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.69 E-value=1.3e-16 Score=161.79 Aligned_cols=117 Identities=16% Similarity=0.053 Sum_probs=82.4
Q ss_pred cccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCC-------------------cccccccchh--
Q 024413 63 INFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT-------------------LPFAANIDIR-- 121 (268)
Q Consensus 63 ~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~-------------------~~~~~~~~~~-- 121 (268)
...++.|+.++|+||+||||||.+..|-++|.|+.|.|.++|.|...-+ .+..+|+...
T Consensus 1010 ~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~ 1089 (1228)
T KOG0055|consen 1010 SLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSE 1089 (1228)
T ss_pred cEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCC
Confidence 3348999999999999999999999999999999999999998754211 1222222211
Q ss_pred --hHHHHHHHHHHcC-------CCCCCCcc--cchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 122 --DTIRYKEVMKQFN-------LGPNGGIL--TSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 122 --~~~~~~~~l~~~~-------l~~~~~~~--~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
...++.+.++..+ |...-+.. ..-.+||||||||++||||++.+|+++||||++-..+
T Consensus 1090 ~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALD 1158 (1228)
T KOG0055|consen 1090 EVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALD 1158 (1228)
T ss_pred CCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhh
Confidence 1222223222222 21111111 1245799999999999999999999999999987654
No 356
>PLN03130 ABC transporter C family member; Provisional
Probab=99.69 E-value=2e-16 Score=168.91 Aligned_cols=118 Identities=14% Similarity=0.125 Sum_probs=84.9
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC----------Cccc---------ccccchh
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM----------TLPF---------AANIDIR 121 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~----------~~~~---------~~~~~~~ 121 (268)
.....+++|++++|+|++|||||||+++|.|++.|++|.|.++|.|...- .+|+ .+|++..
T Consensus 1257 ~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~ 1336 (1622)
T PLN03130 1257 GLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPF 1336 (1622)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcC
Confidence 33455899999999999999999999999999999999999999875311 1111 2233221
Q ss_pred ---hHHHHHHHHHHcCCCCC---------CCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc
Q 024413 122 ---DTIRYKEVMKQFNLGPN---------GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE 178 (268)
Q Consensus 122 ---~~~~~~~~l~~~~l~~~---------~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~ 178 (268)
....+.+.++..++.+. ..+...-..||||||||++||||+..+|+++|+|||+..-
T Consensus 1337 ~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaL 1405 (1622)
T PLN03130 1337 NEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAV 1405 (1622)
T ss_pred CCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCC
Confidence 22334445555444211 1111123479999999999999999999999999998753
No 357
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.68 E-value=2.1e-16 Score=168.36 Aligned_cols=118 Identities=12% Similarity=0.052 Sum_probs=86.2
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC----------Cc---------ccccccch-
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM----------TL---------PFAANIDI- 120 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~----------~~---------~~~~~~~~- 120 (268)
.....+++|++++|+|++|||||||+++|.|++.|++|.|.++|.|...- .+ +..+|++.
T Consensus 1304 ~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~ 1383 (1522)
T TIGR00957 1304 HINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPF 1383 (1522)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcc
Confidence 34455899999999999999999999999999999999999999875311 11 22233331
Q ss_pred --hhHHHHHHHHHHcCCCCC-----CCccc----chhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc
Q 024413 121 --RDTIRYKEVMKQFNLGPN-----GGILT----SLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE 178 (268)
Q Consensus 121 --~~~~~~~~~l~~~~l~~~-----~~~~~----~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~ 178 (268)
.....+.+.++..++.+. .+... .-..||||||||++||||+..+|+++|+|||+..-
T Consensus 1384 ~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSal 1452 (1522)
T TIGR00957 1384 SQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAV 1452 (1522)
T ss_pred cCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccC
Confidence 123345555666555321 11111 12569999999999999999999999999999753
No 358
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=2.9e-16 Score=147.17 Aligned_cols=144 Identities=14% Similarity=0.044 Sum_probs=96.6
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCC----------ccccc---------ccch--
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT----------LPFAA---------NIDI-- 120 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~----------~~~~~---------~~~~-- 120 (268)
....+++|++++|+|++|||||||+..|.|.+.|++|++.+.|.++..-. +++.. |+..
T Consensus 357 ~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~ 436 (573)
T COG4987 357 FNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLAN 436 (573)
T ss_pred cceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcC
Confidence 34458999999999999999999999999999999999999997653211 12111 1111
Q ss_pred --hhHHHHHHHHHHcCCCCCC---------CcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCc-chhhhhhHHHH
Q 024413 121 --RDTIRYKEVMKQFNLGPNG---------GILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQI-EIFTWSASGAI 188 (268)
Q Consensus 121 --~~~~~~~~~l~~~~l~~~~---------~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~-~~~~~~~~~~~ 188 (268)
-....+-++++.++|.... .....-..|||||+||++|||++.++.+++|+|||+-. |+.++......
T Consensus 437 ~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~l 516 (573)
T COG4987 437 PDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLAL 516 (573)
T ss_pred CCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHH
Confidence 0123344556666664211 11111356999999999999999999999999999874 54444444455
Q ss_pred HHHHHhccCCcEEEEEEcC
Q 024413 189 ITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 189 i~~~~~~~~~d~vv~vvD~ 207 (268)
+.+..+ ...+++..|+.
T Consensus 517 l~~~~~--~kTll~vTHrL 533 (573)
T COG4987 517 LFEHAE--GKTLLMVTHRL 533 (573)
T ss_pred HHHHhc--CCeEEEEeccc
Confidence 544442 23444444444
No 359
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.68 E-value=4.7e-16 Score=144.81 Aligned_cols=119 Identities=18% Similarity=0.081 Sum_probs=82.4
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC----------Cccccc---------ccch-
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM----------TLPFAA---------NIDI- 120 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~----------~~~~~~---------~~~~- 120 (268)
...+.+.+|+.++||||+|||||||.+.|.|..+|.+|.|.+++-+.... ++|+.- |+..
T Consensus 354 ~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf 433 (580)
T COG4618 354 GISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARF 433 (580)
T ss_pred cceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhc
Confidence 34455899999999999999999999999999999999999999765321 223221 1110
Q ss_pred h---hHH---------HHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 121 R---DTI---------RYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 121 ~---~~~---------~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
. +.. .+.+++-.+--+..-.+-..-..||||||||+++|||+-.+|.+++||||-...+
T Consensus 434 ~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD 504 (580)
T COG4618 434 GEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLD 504 (580)
T ss_pred cccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcc
Confidence 0 111 1222332222221122222235699999999999999999999999999977544
No 360
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.68 E-value=1.1e-15 Score=132.49 Aligned_cols=79 Identities=14% Similarity=-0.035 Sum_probs=52.7
Q ss_pred HHHHHHcCCCC-CCCcccchhhhcHHHHHHHHHHHHHhcCC--CEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEE
Q 024413 127 KEVMKQFNLGP-NGGILTSLNLFTTKFDEVISLIERRADHL--DYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTY 203 (268)
Q Consensus 127 ~~~l~~~~l~~-~~~~~~~~~~lS~G~~qr~~ia~al~~~~--~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~ 203 (268)
.++++.+++.. .... .+.+|||||+||+++|++++.+| +++|+|||+..-+.........+...++.....+++.
T Consensus 118 ~~~l~~~~l~~~~~~~--~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~i 195 (226)
T cd03270 118 LGFLVDVGLGYLTLSR--SAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVV 195 (226)
T ss_pred HHHHHHCCCCcccccC--ccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 45778888864 2333 38999999999999999999998 5999999987543222222223333333333455555
Q ss_pred EEcC
Q 024413 204 VVDT 207 (268)
Q Consensus 204 vvD~ 207 (268)
.+|.
T Consensus 196 tH~~ 199 (226)
T cd03270 196 EHDE 199 (226)
T ss_pred EeCH
Confidence 5555
No 361
>PTZ00243 ABC transporter; Provisional
Probab=99.67 E-value=3.4e-16 Score=166.85 Aligned_cols=118 Identities=13% Similarity=0.110 Sum_probs=86.7
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC----------Cc---------ccccccch-
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM----------TL---------PFAANIDI- 120 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~----------~~---------~~~~~~~~- 120 (268)
.....+++|++++|+|++|||||||++.|.|++.|++|.|.++|.|...- .+ +..+|++.
T Consensus 1328 ~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~ 1407 (1560)
T PTZ00243 1328 GVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPF 1407 (1560)
T ss_pred cceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcc
Confidence 34455899999999999999999999999999999999999999875311 11 12223332
Q ss_pred --hhHHHHHHHHHHcCCCCC-----CCcc----cchhhhcHHHHHHHHHHHHHhcC-CCEEEEeCCCCcc
Q 024413 121 --RDTIRYKEVMKQFNLGPN-----GGIL----TSLNLFTTKFDEVISLIERRADH-LDYVLVDTPGQIE 178 (268)
Q Consensus 121 --~~~~~~~~~l~~~~l~~~-----~~~~----~~~~~lS~G~~qr~~ia~al~~~-~~illlDePG~~~ 178 (268)
.....+.+.++..++.+. .+.. ..-..||||||||++||||+..+ |+++|||||+..-
T Consensus 1408 ~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaL 1477 (1560)
T PTZ00243 1408 LEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANI 1477 (1560)
T ss_pred cCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccC
Confidence 123456666776666432 0111 11256999999999999999995 8999999998853
No 362
>PLN03140 ABC transporter G family member; Provisional
Probab=99.67 E-value=1.3e-16 Score=168.55 Aligned_cols=146 Identities=10% Similarity=0.016 Sum_probs=97.3
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCc---ccEEEEecccCCC-----------------CCcccccccch-
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSR---NIRGYVMNLDPAV-----------------MTLPFAANIDI- 120 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~---~g~i~i~~~~~~~-----------------~~~~~~~~~~~- 120 (268)
....+++|++++|+|||||||||||++|+|...++ +|.|.++|.+... ..++..+++..
T Consensus 184 vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~ 263 (1470)
T PLN03140 184 ASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFS 263 (1470)
T ss_pred CeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHH
Confidence 34448999999999999999999999999999887 8999998865310 11122221110
Q ss_pred ---h--------------hH--------------------------HHHHHHHHHcCCCCCCCc---ccchhhhcHHHHH
Q 024413 121 ---R--------------DT--------------------------IRYKEVMKQFNLGPNGGI---LTSLNLFTTKFDE 154 (268)
Q Consensus 121 ---~--------------~~--------------------------~~~~~~l~~~~l~~~~~~---~~~~~~lS~G~~q 154 (268)
+ .. ..++++++.+||....+. ...++.|||||||
T Consensus 264 a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerk 343 (1470)
T PLN03140 264 ARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKK 343 (1470)
T ss_pred HHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccce
Confidence 0 00 013568889999754322 1236889999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhc-cCCcEEEEEEcC
Q 024413 155 VISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS-TFPTVVTYVVDT 207 (268)
Q Consensus 155 r~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~-~~~d~vv~vvD~ 207 (268)
|++||++++.+|+++|+|||+...+...........+.++. ....+|+..++.
T Consensus 344 RVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp 397 (1470)
T PLN03140 344 RVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQP 397 (1470)
T ss_pred eeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCC
Confidence 99999999999999999999875442322222233333332 233455544443
No 363
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.67 E-value=3.9e-16 Score=141.93 Aligned_cols=139 Identities=14% Similarity=0.086 Sum_probs=102.3
Q ss_pred CcccccccCCeEEEEEecCCCCHHHHHHHHHhcccC-----cccEEEEecccCCCCC-------------ccccc---cc
Q 024413 60 SSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQS-----RNIRGYVMNLDPAVMT-------------LPFAA---NI 118 (268)
Q Consensus 60 ~~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~-----~~g~i~i~~~~~~~~~-------------~~~~~---~~ 118 (268)
....+.+..|+.++|+|.+|||||-..+.++++++. -+|++.+.|.+..... +-+.+ ++
T Consensus 27 k~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSL 106 (534)
T COG4172 27 KGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSL 106 (534)
T ss_pred ccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEeccccccc
Confidence 344556899999999999999999999999999865 3579999998765321 00111 11
Q ss_pred ----ch-----------------hhHHHHHHHHHHcCCC-CCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 024413 119 ----DI-----------------RDTIRYKEVMKQFNLG-PNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQ 176 (268)
Q Consensus 119 ----~~-----------------~~~~~~~~~l~~~~l~-~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~ 176 (268)
++ ..+.++-++++.+|+. +......+|++||||||||+.||.|++++|+++|.|||+-
T Consensus 107 NPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTT 186 (534)
T COG4172 107 NPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTT 186 (534)
T ss_pred CcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcc
Confidence 01 1244677789999997 4556667899999999999999999999999999999988
Q ss_pred cchhhhhhHHHHHHHHHhccCC
Q 024413 177 IEIFTWSASGAIITEAFASTFP 198 (268)
Q Consensus 177 ~~~~~~~~~~~~i~~~~~~~~~ 198 (268)
..+.+-....-.+.+.++.+..
T Consensus 187 ALDVtvQaQIL~Ll~~Lq~~~g 208 (534)
T COG4172 187 ALDVTVQAQILDLLKELQAELG 208 (534)
T ss_pred hhhhhhHHHHHHHHHHHHHHhC
Confidence 7654544444455555554443
No 364
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.66 E-value=1.6e-15 Score=128.80 Aligned_cols=110 Identities=12% Similarity=0.055 Sum_probs=71.6
Q ss_pred cccccCCeEEEEEecCCCCHHHHHHHHHhcccCcc---------cEEEEecccCCCCC-------cccccc--cchhhHH
Q 024413 63 INFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRN---------IRGYVMNLDPAVMT-------LPFAAN--IDIRDTI 124 (268)
Q Consensus 63 ~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~---------g~i~i~~~~~~~~~-------~~~~~~--~~~~~~~ 124 (268)
...+.+| +++|+||||||||||+++|+++..+.. +.+.+.+.+..... +..... +......
T Consensus 17 ~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~~~~~ 95 (197)
T cd03278 17 TIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSIISQG 95 (197)
T ss_pred eeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeEEehh
Confidence 3346778 999999999999999999999875542 23444443321100 000000 0011234
Q ss_pred HHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHh----cCCCEEEEeCCCCcc
Q 024413 125 RYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRA----DHLDYVLVDTPGQIE 178 (268)
Q Consensus 125 ~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~----~~~~illlDePG~~~ 178 (268)
++.++++. ... ....+..||+||+||+++|++++ .+|+++|+|||...-
T Consensus 96 ~~~~~l~~---~~~--~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~L 148 (197)
T cd03278 96 DVSEIIEA---PGK--KVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAAL 148 (197)
T ss_pred hHHHHHhC---CCc--cccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccC
Confidence 55666666 222 23348999999999999999986 466999999997654
No 365
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.65 E-value=1.1e-15 Score=162.75 Aligned_cols=118 Identities=20% Similarity=0.166 Sum_probs=80.3
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecc------cCCCCCcccccccchh---hHHHHHHHHH
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNL------DPAVMTLPFAANIDIR---DTIRYKEVMK 131 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~------~~~~~~~~~~~~~~~~---~~~~~~~~l~ 131 (268)
.....+++|++++|+||||||||||+++|+|..++++|.+.++|. ++.....+..+|+... +..++.++++
T Consensus 444 ~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~ 523 (1490)
T TIGR01271 444 NISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIK 523 (1490)
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEEEEeCCCccCCccHHHHHHhccccchHHHHHHHH
Confidence 334458999999999999999999999999999999999888663 1111112333333211 1112222222
Q ss_pred HcC------CCCCCC---cccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc
Q 024413 132 QFN------LGPNGG---ILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE 178 (268)
Q Consensus 132 ~~~------l~~~~~---~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~ 178 (268)
..+ ..+.+. .......||||||||++||||+..+|+++|+|||...-
T Consensus 524 ~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saL 579 (1490)
T TIGR01271 524 ACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHL 579 (1490)
T ss_pred HHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccC
Confidence 222 222221 22235689999999999999999999999999998753
No 366
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.64 E-value=7.4e-16 Score=156.69 Aligned_cols=144 Identities=15% Similarity=0.164 Sum_probs=106.3
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC-----------Cccc----------ccccc
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM-----------TLPF----------AANID 119 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~-----------~~~~----------~~~~~ 119 (268)
.....+++|++.++.|+|||||||++++++|...+++|.+++.|.+.... ..|+ .+++.
T Consensus 583 ~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~ 662 (885)
T KOG0059|consen 583 GLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLE 662 (885)
T ss_pred ceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHHHHH
Confidence 33445899999999999999999999999999999999999988765421 1122 12111
Q ss_pred h----h-----h-HHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCC-cchhhhhhHHHH
Q 024413 120 I----R-----D-TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQ-IEIFTWSASGAI 188 (268)
Q Consensus 120 ~----~-----~-~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~-~~~~~~~~~~~~ 188 (268)
+ + + ...++.+++.++|.+++... ++.||||+|+|+++|.|++.+|+++++|||+. .||.++......
T Consensus 663 ~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~--~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~i 740 (885)
T KOG0059|consen 663 FYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQ--VRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDI 740 (885)
T ss_pred HHHHHcCCChhHHHHHHHHHHHHcCChhhhccc--hhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHH
Confidence 1 1 1 23467789999999988877 99999999999999999999999999999976 466554444444
Q ss_pred HHHHHhccCCcEEEEEEcC
Q 024413 189 ITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 189 i~~~~~~~~~d~vv~vvD~ 207 (268)
+.+..+... .+|++.|..
T Consensus 741 i~~~~k~g~-aiiLTSHsM 758 (885)
T KOG0059|consen 741 IARLRKNGK-AIILTSHSM 758 (885)
T ss_pred HHHHHhcCC-EEEEEcCCH
Confidence 444443332 555554443
No 367
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=4.9e-16 Score=144.73 Aligned_cols=140 Identities=11% Similarity=0.058 Sum_probs=93.8
Q ss_pred cccCCeEEEEEecCCCCHHHHHHHHHh---cccCcccEEEEecccCCCC----Cccc------ccccchh-hHHH-HHHH
Q 024413 65 FKRKPVIIIVVGMAGSGKTTFMHRLVC---HTQSRNIRGYVMNLDPAVM----TLPF------AANIDIR-DTIR-YKEV 129 (268)
Q Consensus 65 ~~~~g~~v~iiG~~GsGKSTLl~~l~g---~~~~~~g~i~i~~~~~~~~----~~~~------~~~~~~~-~~~~-~~~~ 129 (268)
....|..++++|+||+||||||++|+. ...+....+.-+......+ +... ...+..+ .... +..+
T Consensus 102 ~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~ 181 (582)
T KOG0062|consen 102 TLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEALQSVLESDTERLDFLAEEKELLAGLTLEEIYDKI 181 (582)
T ss_pred eeecccccceeCCCCCcHHHHHHHHHhcCcCccCchhheeccchHHHhhhhhccHHHHHHHHhhhhhhccchHHHHHHHH
Confidence 367899999999999999999999998 2233322221111111000 0000 0000011 1122 3337
Q ss_pred HHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCC
Q 024413 130 MKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTP 208 (268)
Q Consensus 130 l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~ 208 (268)
+.-+|+.+...... ++.||||.|.|+++|||+..+||++|||||+-..+ .....|+..++..-...++++.+|..
T Consensus 182 L~glGFt~emq~~p-t~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLD---v~av~WLe~yL~t~~~T~liVSHDr~ 256 (582)
T KOG0062|consen 182 LAGLGFTPEMQLQP-TKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLD---VVAVAWLENYLQTWKITSLIVSHDRN 256 (582)
T ss_pred HHhCCCCHHHHhcc-ccccCcchhhHHHHHHHHhcCCCEEeecCCcccch---hHHHHHHHHHHhhCCceEEEEeccHH
Confidence 77888887655553 78999999999999999999999999999998653 34566888888665567888888874
No 368
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.64 E-value=1.8e-15 Score=161.04 Aligned_cols=117 Identities=15% Similarity=0.138 Sum_probs=85.3
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC----------Ccc---------cccccchh
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM----------TLP---------FAANIDIR 121 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~----------~~~---------~~~~~~~~ 121 (268)
.....+++|++++|+|++|||||||+++|+|++. .+|.|+++|.+...- .+| ..+|++..
T Consensus 1237 ~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~ 1315 (1490)
T TIGR01271 1237 DLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPY 1315 (1490)
T ss_pred ccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcc
Confidence 3345589999999999999999999999999987 799999999875311 111 22233221
Q ss_pred ---hHHHHHHHHHHcCCCCC-----CCccc----chhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc
Q 024413 122 ---DTIRYKEVMKQFNLGPN-----GGILT----SLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE 178 (268)
Q Consensus 122 ---~~~~~~~~l~~~~l~~~-----~~~~~----~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~ 178 (268)
....+.++++..++... .+... .-..||||||||++||||+..+|+++|+|||+..-
T Consensus 1316 ~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~l 1384 (1490)
T TIGR01271 1316 EQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHL 1384 (1490)
T ss_pred cCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccC
Confidence 23456667777766421 11111 12369999999999999999999999999998753
No 369
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.63 E-value=8.1e-15 Score=127.83 Aligned_cols=111 Identities=14% Similarity=0.130 Sum_probs=69.5
Q ss_pred CCeEEEEEecCCCCHHHHHHHHHhc----------------ccCccc--------EEEEecccCCCC----Ccccc----
Q 024413 68 KPVIIIVVGMAGSGKTTFMHRLVCH----------------TQSRNI--------RGYVMNLDPAVM----TLPFA---- 115 (268)
Q Consensus 68 ~g~~v~iiG~~GsGKSTLl~~l~g~----------------~~~~~g--------~i~i~~~~~~~~----~~~~~---- 115 (268)
.+.+++|+||||||||||+++|++. ..+.+| .+.+.+.+.... .....
T Consensus 22 ~~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~i~r~ig 101 (243)
T cd03272 22 SPKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFPIDKEEVRLRRTIG 101 (243)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccCCCCCEEEEEEEEE
Confidence 3779999999999999999999833 333344 444444321100 00000
Q ss_pred ---cccchh----hHHHHHHHHHHcCCCCCC------------------CcccchhhhcHHHHHHHHHHHHHh----cCC
Q 024413 116 ---ANIDIR----DTIRYKEVMKQFNLGPNG------------------GILTSLNLFTTKFDEVISLIERRA----DHL 166 (268)
Q Consensus 116 ---~~~~~~----~~~~~~~~l~~~~l~~~~------------------~~~~~~~~lS~G~~qr~~ia~al~----~~~ 166 (268)
.+..+. ....+..++..+++.... .....+..|||||+||+++|++++ .+|
T Consensus 102 ~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~ 181 (243)
T cd03272 102 LKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSLTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPA 181 (243)
T ss_pred CCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHhhhccccccccccccCHHHHHHHHHHHHHHHhccCCC
Confidence 000010 123455566666665421 112347889999999999999996 358
Q ss_pred CEEEEeCCCCcc
Q 024413 167 DYVLVDTPGQIE 178 (268)
Q Consensus 167 ~illlDePG~~~ 178 (268)
+++|+|||...-
T Consensus 182 ~illlDEp~~~l 193 (243)
T cd03272 182 PFYLFDEIDAAL 193 (243)
T ss_pred CEEEEECCccCC
Confidence 999999998754
No 370
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.63 E-value=1.3e-15 Score=162.41 Aligned_cols=117 Identities=17% Similarity=0.188 Sum_probs=81.9
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecc------cCCCCCcccccccchh---hHHHHHHHHHH
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNL------DPAVMTLPFAANIDIR---DTIRYKEVMKQ 132 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~------~~~~~~~~~~~~~~~~---~~~~~~~~l~~ 132 (268)
....+++|++++|+||||||||||+++|+|.+++++|.+.+++. ++...+.+..+|+... +..++.++++.
T Consensus 657 isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~ 736 (1522)
T TIGR00957 657 ITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEA 736 (1522)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCccccCCcHHHHhhcCCccCHHHHHHHHHH
Confidence 34458999999999999999999999999999999999887653 1111122233333221 22233333333
Q ss_pred ------cCCCCCCC---cccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc
Q 024413 133 ------FNLGPNGG---ILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE 178 (268)
Q Consensus 133 ------~~l~~~~~---~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~ 178 (268)
++..+.+. .......||||||||++||||+..+|+++|+|||...-
T Consensus 737 ~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saL 791 (1522)
T TIGR00957 737 CALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAV 791 (1522)
T ss_pred hCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCcccc
Confidence 33333221 22336789999999999999999999999999998754
No 371
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.62 E-value=2.1e-15 Score=141.25 Aligned_cols=139 Identities=13% Similarity=0.109 Sum_probs=101.2
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC---C----Cccc----cccc----c-hhhHHHHHHH
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV---M----TLPF----AANI----D-IRDTIRYKEV 129 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~---~----~~~~----~~~~----~-~~~~~~~~~~ 129 (268)
+..+..++++||||+|||||++.++|.+.|+.|.+.-.-..... . .+.. .+++ . .+....+..+
T Consensus 413 id~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~i 492 (614)
T KOG0927|consen 413 IDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSI 492 (614)
T ss_pred cCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHH
Confidence 56788999999999999999999999999999877543222111 0 0000 0000 0 1334567778
Q ss_pred HHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCC
Q 024413 130 MKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTP 208 (268)
Q Consensus 130 l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~ 208 (268)
+..|||......+. +++||.|||.||.+++..+..|.+++||||+.+.. ..-...+.+++..-.+.+|++.+|-.
T Consensus 493 lgrfgLtgd~q~~p-~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLD---i~tid~laeaiNe~~Ggvv~vSHDfr 567 (614)
T KOG0927|consen 493 LGRFGLTGDAQVVP-MSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLD---IETIDALAEAINEFPGGVVLVSHDFR 567 (614)
T ss_pred HHHhCCCccccccc-hhhcccccchhHHHHHHHhcCCcEEEecCCCcCCC---chhHHHHHHHHhccCCceeeeechhh
Confidence 99999997766554 89999999999999999999999999999998653 23344556666555567777777773
No 372
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.62 E-value=2.7e-15 Score=138.77 Aligned_cols=123 Identities=26% Similarity=0.307 Sum_probs=87.8
Q ss_pred eEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccchhhhc
Q 024413 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (268)
Q Consensus 70 ~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~lS 149 (268)
.+++|+|.+++|||||+|.|+|...+ ++.+.|+. ++|+..- . .
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~A------------IV~D~pGv----TRDr~y~-------------~-~------- 46 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIA------------IVSDTPGV----TRDRIYG-------------D-A------- 46 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeee------------EeecCCCC----ccCCccc-------------e-e-------
Confidence 57899999999999999999997665 55666665 2333210 0 0
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHH--hccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHH
Q 024413 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAF--ASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (268)
Q Consensus 150 ~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~--~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l 227 (268)
-+.+.++.++||+|+.... .......+.++. +-..+|+++||||+..+.++.|... ...+
T Consensus 47 ------------~~~~~~f~lIDTgGl~~~~-~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~i-----a~~L 108 (444)
T COG1160 47 ------------EWLGREFILIDTGGLDDGD-EDELQELIREQALIAIEEADVILFVVDGREGITPADEEI-----AKIL 108 (444)
T ss_pred ------------EEcCceEEEEECCCCCcCC-chHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHH-----HHHH
Confidence 1336679999999997532 123333333332 3356999999999999999988542 4666
Q ss_pred HhhCCCceeeecCCCcCChh
Q 024413 228 YKTRLPLVLAFNKTDVAQHE 247 (268)
Q Consensus 228 ~~~~~p~ilV~NK~Dl~~~~ 247 (268)
....+|+|+|+||+|..+.+
T Consensus 109 r~~~kpviLvvNK~D~~~~e 128 (444)
T COG1160 109 RRSKKPVILVVNKIDNLKAE 128 (444)
T ss_pred HhcCCCEEEEEEcccCchhh
Confidence 67779999999999988544
No 373
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.62 E-value=4.7e-16 Score=126.84 Aligned_cols=120 Identities=27% Similarity=0.347 Sum_probs=77.8
Q ss_pred EEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccchhhhcH
Q 024413 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT 150 (268)
Q Consensus 71 ~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~ 150 (268)
.++++|.+++|||||+|+|+|.... ..+.|+.+--... +..+
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~~-------------v~n~pG~Tv~~~~------------------g~~~------- 43 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQK-------------VGNWPGTTVEKKE------------------GIFK------- 43 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEE-------------EEESTTSSSEEEE------------------EEEE-------
T ss_pred EEEEECCCCCCHHHHHHHHHCCCce-------------ecCCCCCCeeeee------------------EEEE-------
Confidence 4799999999999999999998633 1222332100000 0000
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhh
Q 024413 151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKT 230 (268)
Q Consensus 151 G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~ 230 (268)
..+.++.|+|+||+......+.......+++.....|++++|+|+.+. ...++.+.++...
T Consensus 44 ------------~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l-------~r~l~l~~ql~e~ 104 (156)
T PF02421_consen 44 ------------LGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATNL-------ERNLYLTLQLLEL 104 (156)
T ss_dssp ------------ETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGGH-------HHHHHHHHHHHHT
T ss_pred ------------ecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCCH-------HHHHHHHHHHHHc
Confidence 125689999999997764444555555666666778999999999641 1123335667788
Q ss_pred CCCceeeecCCCcCChh
Q 024413 231 RLPLVLAFNKTDVAQHE 247 (268)
Q Consensus 231 ~~p~ilV~NK~Dl~~~~ 247 (268)
++|+++|+||+|.....
T Consensus 105 g~P~vvvlN~~D~a~~~ 121 (156)
T PF02421_consen 105 GIPVVVVLNKMDEAERK 121 (156)
T ss_dssp TSSEEEEEETHHHHHHT
T ss_pred CCCEEEEEeCHHHHHHc
Confidence 99999999999997654
No 374
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.62 E-value=1.4e-15 Score=140.08 Aligned_cols=122 Identities=18% Similarity=0.128 Sum_probs=84.1
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCccccccc----chh------------hHHHHHHH
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANI----DIR------------DTIRYKEV 129 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~----~~~------------~~~~~~~~ 129 (268)
+..|++++++||||-||||+++.|+|.+.|++|. ..+..++..|++-.- +.+ +..-..++
T Consensus 364 i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei 439 (591)
T COG1245 364 IYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EEDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEI 439 (591)
T ss_pred eecceEEEEECCCCcchHHHHHHHhccccCCCCC----CccceEeecceeecCCCCCcHHHHHHHhhhhhcccchhHHhh
Confidence 7899999999999999999999999999999986 222222222222100 010 11123345
Q ss_pred HHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHH
Q 024413 130 MKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAF 193 (268)
Q Consensus 130 l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~ 193 (268)
++-++|..-.... +.+||||+.||++||.+|..+.++.|||||....+..........++.+
T Consensus 440 ~~pl~l~~i~e~~--v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~ 501 (591)
T COG1245 440 VKPLNLEDLLERP--VDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRF 501 (591)
T ss_pred cCccchHHHHhcc--cccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHH
Confidence 5556665444433 7899999999999999999999999999999865433333334444443
No 375
>PLN03130 ABC transporter C family member; Provisional
Probab=99.62 E-value=3.4e-15 Score=159.62 Aligned_cols=119 Identities=16% Similarity=0.130 Sum_probs=85.0
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcc-cEEEEecc------cCCCCCcccccccch---hhHHHHHHHH
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRN-IRGYVMNL------DPAVMTLPFAANIDI---RDTIRYKEVM 130 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~-g~i~i~~~------~~~~~~~~~~~~~~~---~~~~~~~~~l 130 (268)
.....+++|++++|+||+|||||||++.|+|.+.+++ |.+.+.+. ++...+-+..+|+.. .+..++.+++
T Consensus 635 ~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl 714 (1622)
T PLN03130 635 NINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAI 714 (1622)
T ss_pred ceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHH
Confidence 3344589999999999999999999999999999999 78776542 222222334444432 1345566666
Q ss_pred HHcCCCC------CCC---cccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 131 KQFNLGP------NGG---ILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 131 ~~~~l~~------~~~---~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
+..+|.. .+. +...-..||||||||++||||+..+|+++|+|||...-+
T Consensus 715 ~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD 772 (1622)
T PLN03130 715 DVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALD 772 (1622)
T ss_pred HHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccC
Confidence 6655532 111 111134599999999999999999999999999987543
No 376
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.61 E-value=2.8e-15 Score=133.10 Aligned_cols=123 Identities=21% Similarity=0.264 Sum_probs=75.0
Q ss_pred EEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccchhhhcH
Q 024413 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT 150 (268)
Q Consensus 71 ~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~ 150 (268)
.++|+|++|+|||||+|+|+|.... .....+.++...+. +..
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~------------~vs~~~~TTr~~i~------------------~i~-------- 43 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKIS------------ITSPKAQTTRNRIS------------------GIH-------- 43 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEe------------ecCCCCCcccCcEE------------------EEE--------
Confidence 5899999999999999999986432 12222222110000 000
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHh--ccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHH
Q 024413 151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFA--STFPTVVTYVVDTPRSANPMTFMSNMLYACSILY 228 (268)
Q Consensus 151 G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~--~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~ 228 (268)
...+.+++|+||||+.+... .....+.+... ...+|++++|+|+........+ ....+.
T Consensus 44 -----------~~~~~qii~vDTPG~~~~~~--~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~~~------i~~~l~ 104 (270)
T TIGR00436 44 -----------TTGASQIIFIDTPGFHEKKH--SLNRLMMKEARSAIGGVDLILFVVDSDQWNGDGEF------VLTKLQ 104 (270)
T ss_pred -----------EcCCcEEEEEECcCCCCCcc--hHHHHHHHHHHHHHhhCCEEEEEEECCCCCchHHH------HHHHHH
Confidence 01244689999999976522 22222222211 1458999999999765433211 134455
Q ss_pred hhCCCceeeecCCCcCChhhhh
Q 024413 229 KTRLPLVLAFNKTDVAQHEFAL 250 (268)
Q Consensus 229 ~~~~p~ilV~NK~Dl~~~~~~~ 250 (268)
..++|+++|+||+|+..+++..
T Consensus 105 ~~~~p~ilV~NK~Dl~~~~~~~ 126 (270)
T TIGR00436 105 NLKRPVVLTRNKLDNKFKDKLL 126 (270)
T ss_pred hcCCCEEEEEECeeCCCHHHHH
Confidence 6689999999999998655433
No 377
>PLN03232 ABC transporter C family member; Provisional
Probab=99.61 E-value=2.9e-15 Score=159.53 Aligned_cols=118 Identities=13% Similarity=0.077 Sum_probs=82.2
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEE-------EEecccCCCCCcccccccchh---hHHHHHHHHH
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRG-------YVMNLDPAVMTLPFAANIDIR---DTIRYKEVMK 131 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i-------~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~ 131 (268)
....+++|+.++|+|++|||||||++.|+|.+.+++|.+ .+..+++...+-+..+|+... +..++.++++
T Consensus 636 inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~ 715 (1495)
T PLN03232 636 INLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAID 715 (1495)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHH
Confidence 344589999999999999999999999999999987633 222222222233444444321 3455666666
Q ss_pred HcCCCC------CCCc---ccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 132 QFNLGP------NGGI---LTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 132 ~~~l~~------~~~~---~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
..++.+ .+.. ...-..||||||||++||||+..+|+++|+|||...-+
T Consensus 716 ~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD 772 (1495)
T PLN03232 716 VTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALD 772 (1495)
T ss_pred HhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccC
Confidence 655532 1111 11124699999999999999999999999999987543
No 378
>PTZ00243 ABC transporter; Provisional
Probab=99.60 E-value=4.7e-15 Score=158.16 Aligned_cols=115 Identities=20% Similarity=0.202 Sum_probs=79.0
Q ss_pred cccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecc------cCCCCCcccccccchh---hHHHHHHH----
Q 024413 63 INFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNL------DPAVMTLPFAANIDIR---DTIRYKEV---- 129 (268)
Q Consensus 63 ~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~------~~~~~~~~~~~~~~~~---~~~~~~~~---- 129 (268)
...+++|++++|+|+||||||||+++|+|.+.+++|.+.+.+. ++.....+..+|+... +..++.+.
T Consensus 680 sl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~ 759 (1560)
T PTZ00243 680 SVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVS 759 (1560)
T ss_pred EEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHHHHHHh
Confidence 4458999999999999999999999999999999998765321 1111122233333221 11122222
Q ss_pred -----HHHc--CCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 130 -----MKQF--NLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 130 -----l~~~--~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
++.+ |+....+ .....||||||||++||||+..+|+++|+|||...-+
T Consensus 760 ~l~~~l~~l~~g~~t~i~--~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD 814 (1560)
T PTZ00243 760 QLEADLAQLGGGLETEIG--EKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALD 814 (1560)
T ss_pred hhHHHHHHhhccchHHhc--CCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCC
Confidence 3333 3332222 2367899999999999999999999999999987543
No 379
>PRK00089 era GTPase Era; Reviewed
Probab=99.60 E-value=4e-15 Score=133.36 Aligned_cols=122 Identities=30% Similarity=0.402 Sum_probs=74.0
Q ss_pred CCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccchhh
Q 024413 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (268)
Q Consensus 68 ~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 147 (268)
+..+++|+|++|||||||+|.|+|.... .....+.++...+. ....
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~------------~vs~~~~tt~~~i~------------------~i~~---- 49 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKIS------------IVSPKPQTTRHRIR------------------GIVT---- 49 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCcee------------ecCCCCCcccccEE------------------EEEE----
Confidence 3467899999999999999999985432 11111221100000 0000
Q ss_pred hcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHH--hccCCcEEEEEEcCCCcCCchhhHHHHHHHHH
Q 024413 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAF--ASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (268)
Q Consensus 148 lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~--~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~ 225 (268)
..+.+++++||||+.++.. .....+.... ....+|++++++|+...+...+.. ...
T Consensus 50 ---------------~~~~qi~~iDTPG~~~~~~--~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~-----i~~ 107 (292)
T PRK00089 50 ---------------EDDAQIIFVDTPGIHKPKR--ALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEF-----ILE 107 (292)
T ss_pred ---------------cCCceEEEEECCCCCCchh--HHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHH-----HHH
Confidence 1135799999999977532 2222222221 124589999999998754443311 124
Q ss_pred HHHhhCCCceeeecCCCcCC
Q 024413 226 ILYKTRLPLVLAFNKTDVAQ 245 (268)
Q Consensus 226 ~l~~~~~p~ilV~NK~Dl~~ 245 (268)
.+...+.|+++|+||+|+.+
T Consensus 108 ~l~~~~~pvilVlNKiDl~~ 127 (292)
T PRK00089 108 KLKKVKTPVILVLNKIDLVK 127 (292)
T ss_pred HHhhcCCCEEEEEECCcCCC
Confidence 44455789999999999984
No 380
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.57 E-value=3.7e-14 Score=125.19 Aligned_cols=81 Identities=15% Similarity=0.069 Sum_probs=53.6
Q ss_pred HHHHHHHHcCCCC-CCCcccchhhhcHHHHHHHHHHHHHhcC---CCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcE
Q 024413 125 RYKEVMKQFNLGP-NGGILTSLNLFTTKFDEVISLIERRADH---LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTV 200 (268)
Q Consensus 125 ~~~~~l~~~~l~~-~~~~~~~~~~lS~G~~qr~~ia~al~~~---~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~ 200 (268)
+..++++.++|.. .... .+.+|||||+||+.+|+++..+ |+++|+|||+..-..........+...+......+
T Consensus 148 ~~~~~L~~vgL~~l~l~~--~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tv 225 (261)
T cd03271 148 RKLQTLCDVGLGYIKLGQ--PATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTV 225 (261)
T ss_pred HHHHHHHHcCCchhhhcC--ccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEE
Confidence 4556778888875 2333 3889999999999999999986 79999999987543222222233333343333455
Q ss_pred EEEEEcC
Q 024413 201 VTYVVDT 207 (268)
Q Consensus 201 vv~vvD~ 207 (268)
|+..+|.
T Consensus 226 IiitH~~ 232 (261)
T cd03271 226 VVIEHNL 232 (261)
T ss_pred EEEeCCH
Confidence 5554444
No 381
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.57 E-value=1.7e-14 Score=126.71 Aligned_cols=112 Identities=18% Similarity=0.177 Sum_probs=74.4
Q ss_pred CCeEEEEEecCCCCHHHHHHHHHhcccCc-ccEEEEecc-cCC-------------------------------CCCccc
Q 024413 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSR-NIRGYVMNL-DPA-------------------------------VMTLPF 114 (268)
Q Consensus 68 ~g~~v~iiG~~GsGKSTLl~~l~g~~~~~-~g~i~i~~~-~~~-------------------------------~~~~~~ 114 (268)
.+.+++|+||||||||||+++|++...+. .+.+.+.+. +.. ...++.
T Consensus 24 ~~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV 103 (251)
T cd03273 24 DPQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITV 103 (251)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEE
Confidence 46788999999999999999999987654 233333222 100 000111
Q ss_pred ccccc--------h----hhHHHHHHHHHHcCCCCC------------------CCcccchhhhcHHHHHHHHHHHHHh-
Q 024413 115 AANID--------I----RDTIRYKEVMKQFNLGPN------------------GGILTSLNLFTTKFDEVISLIERRA- 163 (268)
Q Consensus 115 ~~~~~--------~----~~~~~~~~~l~~~~l~~~------------------~~~~~~~~~lS~G~~qr~~ia~al~- 163 (268)
..++. + ....++.++++.+++... ......+..||+||+||+++|++++
T Consensus 104 ~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~ 183 (251)
T cd03273 104 TRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILAL 183 (251)
T ss_pred EEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHH
Confidence 11110 1 123567788999998632 1122347899999999999999997
Q ss_pred ---cCCCEEEEeCCCCcch
Q 024413 164 ---DHLDYVLVDTPGQIEI 179 (268)
Q Consensus 164 ---~~~~illlDePG~~~~ 179 (268)
.+|+++|+|||+..-+
T Consensus 184 ~~~~~~~illlDEPt~~ld 202 (251)
T cd03273 184 LLFKPAPMYILDEVDAALD 202 (251)
T ss_pred hhccCCCEEEEeCCCcCCC
Confidence 5789999999987543
No 382
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.57 E-value=1.3e-14 Score=124.40 Aligned_cols=138 Identities=13% Similarity=0.018 Sum_probs=71.8
Q ss_pred CCeEEEEEecCCCCHHHHHHHHHhcc-cCcccEEEEec-ccCC---CC--Ccccc----cc-cc-----hhhHHHHHH--
Q 024413 68 KPVIIIVVGMAGSGKTTFMHRLVCHT-QSRNIRGYVMN-LDPA---VM--TLPFA----AN-ID-----IRDTIRYKE-- 128 (268)
Q Consensus 68 ~g~~v~iiG~~GsGKSTLl~~l~g~~-~~~~g~i~i~~-~~~~---~~--~~~~~----~~-~~-----~~~~~~~~~-- 128 (268)
+|++++|+|+||||||||+++|.+.. .+..+...... .+.. .. .+... .. +. ..+...+.+
T Consensus 27 ~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~r~~gl~~~~~~~~~ 106 (213)
T cd03279 27 NNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKYRVERSRGLDYDQFTRIV 106 (213)
T ss_pred ccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEEEEEECCeEEEEEEecCCCHHHHHHhh
Confidence 47899999999999999999999543 22222222110 0000 00 00000 00 00 011111111
Q ss_pred HHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhc----------CCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCC
Q 024413 129 VMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRAD----------HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFP 198 (268)
Q Consensus 129 ~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~----------~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~ 198 (268)
.+...++..... ..+..||+||+||+++|++++. +|+++|+|||...-+.............++....
T Consensus 107 ~l~~g~l~~~l~--~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~ 184 (213)
T cd03279 107 LLPQGEFDRFLA--RPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENR 184 (213)
T ss_pred hhhhcchHHHhc--CCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCC
Confidence 122222332222 2378899999999999999974 6789999999875432222222223333333333
Q ss_pred cEEEEEEcC
Q 024413 199 TVVTYVVDT 207 (268)
Q Consensus 199 d~vv~vvD~ 207 (268)
.+++..+|.
T Consensus 185 tii~itH~~ 193 (213)
T cd03279 185 MVGVISHVE 193 (213)
T ss_pred EEEEEECch
Confidence 445544444
No 383
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.56 E-value=1.7e-14 Score=131.05 Aligned_cols=148 Identities=11% Similarity=0.022 Sum_probs=102.7
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCccccccc-----------------ch-hh
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANI-----------------DI-RD 122 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~-----------------~~-~~ 122 (268)
+....+++|+++-|+|.||||||||++.|+|+++|++|.|+++|.++..+...-+..+ +- ..
T Consensus 341 PiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~~e~~as 420 (546)
T COG4615 341 PINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKAS 420 (546)
T ss_pred ceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhCCccCCC
Confidence 3444589999999999999999999999999999999999999987654332111100 00 12
Q ss_pred HHHHHHHHHHcCCCCCCC---cccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCc-chhhhhhHHHHHHHHHhccCC
Q 024413 123 TIRYKEVMKQFNLGPNGG---ILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQI-EIFTWSASGAIITEAFASTFP 198 (268)
Q Consensus 123 ~~~~~~~l~~~~l~~~~~---~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~-~~~~~~~~~~~i~~~~~~~~~ 198 (268)
...++.+++.+.+...-. -.-++-.||.|||+|+++..|+..+.+++++||=... ||.-+......+...++....
T Consensus 421 ~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGK 500 (546)
T COG4615 421 PQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGK 500 (546)
T ss_pred hHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCC
Confidence 345666777766643211 1112557999999999999999999999999997653 332222333344445555556
Q ss_pred cEEEEEEcCC
Q 024413 199 TVVTYVVDTP 208 (268)
Q Consensus 199 d~vv~vvD~~ 208 (268)
.++...+|..
T Consensus 501 TI~aIsHDd~ 510 (546)
T COG4615 501 TIFAISHDDH 510 (546)
T ss_pred eEEEEecCch
Confidence 6777777764
No 384
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.56 E-value=1.3e-14 Score=134.71 Aligned_cols=121 Identities=12% Similarity=0.019 Sum_probs=81.2
Q ss_pred CCcccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC----------CCccccc---------ccc
Q 024413 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV----------MTLPFAA---------NID 119 (268)
Q Consensus 59 ~~~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~----------~~~~~~~---------~~~ 119 (268)
.....+-+.+|..++++||+|+||||+|+.|.+++...+|.|.++|+|... .-+|+.. |+.
T Consensus 554 l~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIr 633 (790)
T KOG0056|consen 554 LSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIR 633 (790)
T ss_pred eecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeehee
Confidence 334455589999999999999999999999999999999999999998531 1122221 111
Q ss_pred hh----hHHHHHHHH-------HHcCCCCCCCcc--cchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 120 IR----DTIRYKEVM-------KQFNLGPNGGIL--TSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 120 ~~----~~~~~~~~l-------~~~~l~~~~~~~--~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
.. ....+.+.. ..+++.+.-... +.-=.||||+|||++|||++...|.++++||++-..+
T Consensus 634 yak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALD 706 (790)
T KOG0056|consen 634 YAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALD 706 (790)
T ss_pred ecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcC
Confidence 00 001111111 122332211111 1112399999999999999999999999999987654
No 385
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.56 E-value=3.6e-14 Score=124.43 Aligned_cols=137 Identities=15% Similarity=0.115 Sum_probs=81.6
Q ss_pred eEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCC---------------------CCC---ccc----cc-----
Q 024413 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA---------------------VMT---LPF----AA----- 116 (268)
Q Consensus 70 ~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~---------------------~~~---~~~----~~----- 116 (268)
.+++|+||||||||||+.+|.+...+..+.....+.... ... ... ..
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~ 102 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSY 102 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceEE
Confidence 489999999999999999999888665443332211000 000 000 00
Q ss_pred ccc--hhhHHHHHHHHHHcCCCCCCC--------------------cccchhhhcHHHHHHHHHHHHHhcC----CCEEE
Q 024413 117 NID--IRDTIRYKEVMKQFNLGPNGG--------------------ILTSLNLFTTKFDEVISLIERRADH----LDYVL 170 (268)
Q Consensus 117 ~~~--~~~~~~~~~~l~~~~l~~~~~--------------------~~~~~~~lS~G~~qr~~ia~al~~~----~~ill 170 (268)
.+. ......++++++.+++..... ....+..||+||+||++++++++.+ |+++|
T Consensus 103 ~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~ll 182 (247)
T cd03275 103 RINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFV 182 (247)
T ss_pred EECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEE
Confidence 000 112445678888888863311 1123589999999999999999864 89999
Q ss_pred EeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEc
Q 024413 171 VDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVD 206 (268)
Q Consensus 171 lDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD 206 (268)
+|||...-+.........++..+......+++..+|
T Consensus 183 lDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~ 218 (247)
T cd03275 183 LDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLK 218 (247)
T ss_pred EecccccCCHHHHHHHHHHHHHhccCCcEEEEEECC
Confidence 999987543222222223333333333445554444
No 386
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.55 E-value=1.6e-14 Score=134.05 Aligned_cols=133 Identities=20% Similarity=0.278 Sum_probs=93.5
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCc
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGI 141 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 141 (268)
.+...+.|..++|+|+|++|||||||+|++..++ .+.+.++++ ||..+ +.+.
T Consensus 210 ~g~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~A------------IVTdI~GTT----RDvie-----e~i~------- 261 (454)
T COG0486 210 QGKILREGLKVVIIGRPNVGKSSLLNALLGRDRA------------IVTDIAGTT----RDVIE-----EDIN------- 261 (454)
T ss_pred hhhhhhcCceEEEECCCCCcHHHHHHHHhcCCce------------EecCCCCCc----cceEE-----EEEE-------
Confidence 3445899999999999999999999999998877 667777774 33211 0111
Q ss_pred ccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhc-cCCcEEEEEEcCCCcCCchhhHHHH
Q 024413 142 LTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNM 220 (268)
Q Consensus 142 ~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~-~~~d~vv~vvD~~~~~~~~~~~~~~ 220 (268)
+.+.++.|+||+|+++.. ...+..-+.+.++. ..+|+|+||+|++..++..+...
T Consensus 262 ---------------------i~G~pv~l~DTAGiRet~-d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~-- 317 (454)
T COG0486 262 ---------------------LNGIPVRLVDTAGIRETD-DVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLAL-- 317 (454)
T ss_pred ---------------------ECCEEEEEEecCCcccCc-cHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHH--
Confidence 346789999999999752 22333333344433 56899999999987655555321
Q ss_pred HHHHHHHHhhCCCceeeecCCCcCChhhhh
Q 024413 221 LYACSILYKTRLPLVLAFNKTDVAQHEFAL 250 (268)
Q Consensus 221 ~~~~~~l~~~~~p~ilV~NK~Dl~~~~~~~ 250 (268)
.. ....++|+++|.||+||.++....
T Consensus 318 ---~~-~~~~~~~~i~v~NK~DL~~~~~~~ 343 (454)
T COG0486 318 ---IE-LLPKKKPIIVVLNKADLVSKIELE 343 (454)
T ss_pred ---HH-hcccCCCEEEEEechhcccccccc
Confidence 11 335678999999999999865433
No 387
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.54 E-value=3.9e-14 Score=136.13 Aligned_cols=140 Identities=12% Similarity=0.101 Sum_probs=94.0
Q ss_pred cccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEeccc--CCCCCcccccccch------------hhHHHHHH
Q 024413 63 INFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLD--PAVMTLPFAANIDI------------RDTIRYKE 128 (268)
Q Consensus 63 ~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~--~~~~~~~~~~~~~~------------~~~~~~~~ 128 (268)
...+++|+.+.|.|+||||||||+++|+|+-+--+|.+...... ...+..|+.+.-+. .....+.+
T Consensus 413 ~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~ 492 (604)
T COG4178 413 NFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVA 492 (604)
T ss_pred eeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHH
Confidence 34489999999999999999999999999998888887776322 11111222211111 23445677
Q ss_pred HHHHcCCCCCCCcccc----hhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEE
Q 024413 129 VMKQFNLGPNGGILTS----LNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYV 204 (268)
Q Consensus 129 ~l~~~~l~~~~~~~~~----~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~v 204 (268)
++..++|++....... -..||+|||||+++||.+.+.|+++++||.+-.-+ ......+.+.++.+..++.+..
T Consensus 493 vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALD---e~~e~~l~q~l~~~lp~~tvIS 569 (604)
T COG4178 493 VLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALD---EETEDRLYQLLKEELPDATVIS 569 (604)
T ss_pred HHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccC---hHHHHHHHHHHHhhCCCCEEEE
Confidence 7888888643221111 14699999999999999999999999999976442 2233445555555555555444
Q ss_pred E
Q 024413 205 V 205 (268)
Q Consensus 205 v 205 (268)
|
T Consensus 570 V 570 (604)
T COG4178 570 V 570 (604)
T ss_pred e
Confidence 3
No 388
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=3.7e-14 Score=130.29 Aligned_cols=140 Identities=15% Similarity=0.111 Sum_probs=98.2
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEE--------ecccCCCCCcccc----cccch---hhHHHHHHHH
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYV--------MNLDPAVMTLPFA----ANIDI---RDTIRYKEVM 130 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i--------~~~~~~~~~~~~~----~~~~~---~~~~~~~~~l 130 (268)
+.-...++|+||||+||||||..|.|.+.|+.|...- +++... ..+... +.+.. -....+...+
T Consensus 610 iDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~-E~L~~Eetp~EyLqr~FNlpyq~ARK~L 688 (807)
T KOG0066|consen 610 IDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHAN-EALNGEETPVEYLQRKFNLPYQEARKQL 688 (807)
T ss_pred ccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhH-HhhccccCHHHHHHHhcCCChHHHHHHh
Confidence 4556789999999999999999999999998764321 111100 000000 00000 1234466678
Q ss_pred HHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCc
Q 024413 131 KQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS 210 (268)
Q Consensus 131 ~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~ 210 (268)
..|||..+.+... +..|||||+.||++|..-...|+++|||||+-... ......+.+.+......+||+.+|.+..
T Consensus 689 G~fGL~sHAHTik-ikdLSGGQKaRValaeLal~~PDvlILDEPTNNLD---IESIDALaEAIney~GgVi~VsHDeRLi 764 (807)
T KOG0066|consen 689 GTFGLASHAHTIK-IKDLSGGQKARVALAELALGGPDVLILDEPTNNLD---IESIDALAEAINEYNGGVIMVSHDERLI 764 (807)
T ss_pred hhhhhhhccceEe-eeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcc---hhhHHHHHHHHHhccCcEEEEeccccee
Confidence 8899998888776 89999999999999998899999999999987542 2334455555555557888888888654
No 389
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.52 E-value=1.6e-13 Score=117.04 Aligned_cols=130 Identities=17% Similarity=0.050 Sum_probs=73.7
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHH----hcccCcccEEEEecccCCC-----------CCc-----------ccccccc
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLV----CHTQSRNIRGYVMNLDPAV-----------MTL-----------PFAANID 119 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~----g~~~~~~g~i~i~~~~~~~-----------~~~-----------~~~~~~~ 119 (268)
+.+| +++|+||||||||||+++|. |...+..+.+......... ... ...+++.
T Consensus 20 ~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~~~~~ 98 (204)
T cd03240 20 FFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAILENVI 98 (204)
T ss_pred cCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHhhcee
Confidence 4445 99999999999999999994 8777765543311100000 000 0000100
Q ss_pred hhhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHH------HHHHHHHhcCCCEEEEeCCCCcchhhhhh-HHHHHHHH
Q 024413 120 IRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEV------ISLIERRADHLDYVLVDTPGQIEIFTWSA-SGAIITEA 192 (268)
Q Consensus 120 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr------~~ia~al~~~~~illlDePG~~~~~~~~~-~~~~i~~~ 192 (268)
......+.+.+ ...+..||+||+|| +++++++..+|+++|+|||...-+..... ....+...
T Consensus 99 ~~~~~~~~~~~-----------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~ 167 (204)
T cd03240 99 FCHQGESNWPL-----------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEE 167 (204)
T ss_pred eechHHHHHHH-----------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHH
Confidence 00111111111 12378899999996 68899999999999999998754322222 23333333
Q ss_pred Hhcc-CCcEEEEEEcC
Q 024413 193 FAST-FPTVVTYVVDT 207 (268)
Q Consensus 193 ~~~~-~~d~vv~vvD~ 207 (268)
++.. ...+++..+|.
T Consensus 168 ~~~~~~~~iiiitH~~ 183 (204)
T cd03240 168 RKSQKNFQLIVITHDE 183 (204)
T ss_pred HHhccCCEEEEEEecH
Confidence 3333 34556655554
No 390
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.52 E-value=8.3e-14 Score=130.65 Aligned_cols=129 Identities=12% Similarity=0.082 Sum_probs=83.6
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEE--EEecccCCCCCccc---------ccccc---------------
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRG--YVMNLDPAVMTLPF---------AANID--------------- 119 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i--~i~~~~~~~~~~~~---------~~~~~--------------- 119 (268)
..+|+.++|+|+|||||||+|++|.|...|..-.+ |............. .+...
T Consensus 98 l~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~v~~~~~~e~~rle~~~E~l~~~~d~~ 177 (614)
T KOG0927|consen 98 LNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQAVVMETDHERKRLEYLAEDLAQACDDK 177 (614)
T ss_pred ecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHHHhhhhHHHHHHHHHHHHHHHhhccch
Confidence 68999999999999999999999999998854322 22221111100000 00000
Q ss_pred -------h------h--h--HHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhh
Q 024413 120 -------I------R--D--TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTW 182 (268)
Q Consensus 120 -------~------~--~--~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~ 182 (268)
+ . + ..++..++..++.......+ .+..||||++.|+++||+|..+|+++|||||+.+.+
T Consensus 178 ~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k-~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLD--- 253 (614)
T KOG0927|consen 178 EKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDK-KVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLD--- 253 (614)
T ss_pred hhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHH-HhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCC---
Confidence 0 0 0 11233344455544433322 278899999999999999999999999999998653
Q ss_pred hhHHHHHHHHHhccCC
Q 024413 183 SASGAIITEAFASTFP 198 (268)
Q Consensus 183 ~~~~~~i~~~~~~~~~ 198 (268)
-....++..+++....
T Consensus 254 leA~~wLee~L~k~d~ 269 (614)
T KOG0927|consen 254 LEAIVWLEEYLAKYDR 269 (614)
T ss_pred HHHHHHHHHHHHhccC
Confidence 2455678788766544
No 391
>PRK15494 era GTPase Era; Provisional
Probab=99.52 E-value=6.5e-14 Score=128.34 Aligned_cols=75 Identities=20% Similarity=0.277 Sum_probs=48.5
Q ss_pred CCCEEEEeCCCCcchhhhhhHHHHHHH-HHh-ccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeecCCC
Q 024413 165 HLDYVLVDTPGQIEIFTWSASGAIITE-AFA-STFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTD 242 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~~~~~~i~~-~~~-~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK~D 242 (268)
+.++.|+||||+.+++. .....+.+ .+. ...+|++++|+|+...++..+.. .+..+...+.|.++|+||+|
T Consensus 99 ~~qi~~~DTpG~~~~~~--~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~-----il~~l~~~~~p~IlViNKiD 171 (339)
T PRK15494 99 DTQVILYDTPGIFEPKG--SLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHN-----ILDKLRSLNIVPIFLLNKID 171 (339)
T ss_pred CeEEEEEECCCcCCCcc--cHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHH-----HHHHHHhcCCCEEEEEEhhc
Confidence 45789999999976532 12212222 221 24589999999998766654321 12344455778899999999
Q ss_pred cCCh
Q 024413 243 VAQH 246 (268)
Q Consensus 243 l~~~ 246 (268)
+.+.
T Consensus 172 l~~~ 175 (339)
T PRK15494 172 IESK 175 (339)
T ss_pred Cccc
Confidence 9754
No 392
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.51 E-value=7.9e-14 Score=112.35 Aligned_cols=74 Identities=26% Similarity=0.332 Sum_probs=46.4
Q ss_pred CCCEEEEeCCCCcchhhhhhHHHHHHHHH--hccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeecCCC
Q 024413 165 HLDYVLVDTPGQIEIFTWSASGAIITEAF--ASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTD 242 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~~~~~~i~~~~--~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK~D 242 (268)
+.++.++|+||+.++... ....+.... ....+|.+++++|+........... ...+...+.|+++|+||+|
T Consensus 50 ~~~~~liDtpG~~~~~~~--~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~-----~~~~~~~~~~~iiv~nK~D 122 (168)
T cd04163 50 DAQIIFVDTPGIHKPKKK--LGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFI-----LELLKKSKTPVILVLNKID 122 (168)
T ss_pred CeEEEEEECCCCCcchHH--HHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHH-----HHHHHHhCCCEEEEEEchh
Confidence 357899999999765321 111111111 1244799999999987633332211 2334455789999999999
Q ss_pred cCC
Q 024413 243 VAQ 245 (268)
Q Consensus 243 l~~ 245 (268)
+..
T Consensus 123 l~~ 125 (168)
T cd04163 123 LVK 125 (168)
T ss_pred ccc
Confidence 983
No 393
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.51 E-value=1.2e-13 Score=142.88 Aligned_cols=132 Identities=15% Similarity=0.157 Sum_probs=89.9
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC----------Cccc---------ccccch--
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM----------TLPF---------AANIDI-- 120 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~----------~~~~---------~~~~~~-- 120 (268)
....+++|+++||+|..|||||||+++|.++..+.+|.|.|+|.|...- -.|+ ..|++-
T Consensus 1159 is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~ 1238 (1381)
T KOG0054|consen 1159 ISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFD 1238 (1381)
T ss_pred ceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCccc
Confidence 3445899999999999999999999999999999999999999886421 1122 223321
Q ss_pred -------h---hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCc-chhhhhhHHHHH
Q 024413 121 -------R---DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQI-EIFTWSASGAII 189 (268)
Q Consensus 121 -------~---~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~-~~~~~~~~~~~i 189 (268)
+ +.....+..+.+..+-+......-..+|-||||.+++|||+..+.+|+++||++.. |+.++......+
T Consensus 1239 e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tI 1318 (1381)
T KOG0054|consen 1239 EYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTI 1318 (1381)
T ss_pred ccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHH
Confidence 1 11122233333222222222333467999999999999999999999999999984 554444333444
Q ss_pred HHHH
Q 024413 190 TEAF 193 (268)
Q Consensus 190 ~~~~ 193 (268)
.+.+
T Consensus 1319 R~~F 1322 (1381)
T KOG0054|consen 1319 REEF 1322 (1381)
T ss_pred HHHh
Confidence 4433
No 394
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.51 E-value=7e-14 Score=128.96 Aligned_cols=136 Identities=14% Similarity=0.110 Sum_probs=89.2
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC----CCccccc-----------cc------------
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV----MTLPFAA-----------NI------------ 118 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~----~~~~~~~-----------~~------------ 118 (268)
.++|.+++|+|+||-||||-+++|+|...|.=|.--= ++.. ..+.+++ .+
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~---pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~i 173 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYED---PPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLI 173 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCC---CCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHH
Confidence 5789999999999999999999999999885432100 0000 0000000 00
Q ss_pred ------ch-------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhH
Q 024413 119 ------DI-------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSAS 185 (268)
Q Consensus 119 ------~~-------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~ 185 (268)
.+ ...-..+++++.++|..-.... ++.||||+-||++||.++..+.++.++|||.-..+-.....
T Consensus 174 Pk~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~--v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~ 251 (591)
T COG1245 174 PKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRD--VSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLN 251 (591)
T ss_pred HHHhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhh--hhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHH
Confidence 00 0112467788999998766555 99999999999999999999999999999987543222233
Q ss_pred HHHHHHHHhccCCcEEEEEEc
Q 024413 186 GAIITEAFASTFPTVVTYVVD 206 (268)
Q Consensus 186 ~~~i~~~~~~~~~d~vv~vvD 206 (268)
...+++.+.....-++|+=||
T Consensus 252 ~ar~Irel~~~~k~ViVVEHD 272 (591)
T COG1245 252 AARVIRELAEDGKYVIVVEHD 272 (591)
T ss_pred HHHHHHHHhccCCeEEEEech
Confidence 344444444433344444344
No 395
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.50 E-value=2.6e-14 Score=122.73 Aligned_cols=50 Identities=12% Similarity=-0.088 Sum_probs=38.1
Q ss_pred HHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhc----CCCEEEEeCCCCcc
Q 024413 127 KEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRAD----HLDYVLVDTPGQIE 178 (268)
Q Consensus 127 ~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~----~~~illlDePG~~~ 178 (268)
.++++.+++....... +..||+||+||+++|++++. .|+++++|||+..-
T Consensus 109 ~~~~~~~~L~~~~~~~--~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gL 162 (212)
T cd03274 109 GEVEQIAQMPKKSWKN--ISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAAL 162 (212)
T ss_pred CcEEEeeccccccccc--hhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCC
Confidence 3444566665433333 78999999999999999963 47999999998754
No 396
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.49 E-value=1.5e-13 Score=142.29 Aligned_cols=116 Identities=23% Similarity=0.172 Sum_probs=87.2
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCc------ccccccch---hhHHHHHHHHHH
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTL------PFAANIDI---RDTIRYKEVMKQ 132 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~------~~~~~~~~---~~~~~~~~~l~~ 132 (268)
....+++|+.++|+|+.|||||||+.+|+|..+..+|.+.+.|.-...+.. +..+|+-. -+..+++++++.
T Consensus 540 In~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~a 619 (1381)
T KOG0054|consen 540 INFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQNGTVRENILFGSPYDEERYDKVIKA 619 (1381)
T ss_pred eeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhhCCcHHHhhhcCccccHHHHHHHHHH
Confidence 344589999999999999999999999999999999999998863222222 22233322 256778888877
Q ss_pred cCCCCCCCcc---------cchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCc
Q 024413 133 FNLGPNGGIL---------TSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQI 177 (268)
Q Consensus 133 ~~l~~~~~~~---------~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~ 177 (268)
..|.+..... +.--.||||||||+++|||.=.+.++.|+|.|--.
T Consensus 620 C~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSA 673 (1381)
T KOG0054|consen 620 CALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSA 673 (1381)
T ss_pred ccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchh
Confidence 7775432221 11246999999999999999999999999999543
No 397
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.49 E-value=2.3e-14 Score=145.89 Aligned_cols=142 Identities=14% Similarity=0.109 Sum_probs=101.8
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccC--cccEEEEecccCC-----------------CCCcccccccch------
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQS--RNIRGYVMNLDPA-----------------VMTLPFAANIDI------ 120 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~--~~g~i~i~~~~~~-----------------~~~~~~~~~~~~------ 120 (268)
+++|..++|+|++|||||||||+|+|.... .+|.+.|+|.+.. ...++..+.+..
T Consensus 814 ~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRl 893 (1391)
T KOG0065|consen 814 FKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRL 893 (1391)
T ss_pred ecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHHHHHHcC
Confidence 789999999999999999999999998532 5678888776543 112333332211
Q ss_pred ------hh-HHHHHHHHHHcCCCCCCCcc--cchhhhcHHHHHHHHHHHHHhcCC-CEEEEeCCCCcchhhhhhHHHHHH
Q 024413 121 ------RD-TIRYKEVMKQFNLGPNGGIL--TSLNLFTTKFDEVISLIERRADHL-DYVLVDTPGQIEIFTWSASGAIIT 190 (268)
Q Consensus 121 ------~~-~~~~~~~l~~~~l~~~~~~~--~~~~~lS~G~~qr~~ia~al~~~~-~illlDePG~~~~~~~~~~~~~i~ 190 (268)
.+ ...++++++.++|.+..... ..-+.||..||+|+.|+..|+.+| .++++|||+-..+.........+.
T Consensus 894 p~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~l 973 (1391)
T KOG0065|consen 894 PKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFL 973 (1391)
T ss_pred CCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHH
Confidence 12 25688899999998765554 111349999999999999999999 899999998766533333444555
Q ss_pred HHHhccCCcEEEEEEcC
Q 024413 191 EAFASTFPTVVTYVVDT 207 (268)
Q Consensus 191 ~~~~~~~~d~vv~vvD~ 207 (268)
+.++.+...+++.+|=.
T Consensus 974 rkla~tGqtIlCTIHQP 990 (1391)
T KOG0065|consen 974 RKLADTGQTILCTIHQP 990 (1391)
T ss_pred HHHHhcCCeEEEEecCC
Confidence 55666666777776644
No 398
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.48 E-value=4.8e-13 Score=113.38 Aligned_cols=82 Identities=18% Similarity=0.187 Sum_probs=46.1
Q ss_pred CEEEEeCCCCcchhhhhhHHHHHHHHHh-ccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeecCCCcCC
Q 024413 167 DYVLVDTPGQIEIFTWSASGAIITEAFA-STFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQ 245 (268)
Q Consensus 167 ~illlDePG~~~~~~~~~~~~~i~~~~~-~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK~Dl~~ 245 (268)
++.|+|+||+.+..... ........+. ...+|++++++|+......... ......+..+...++|+++|+||+|+..
T Consensus 90 ~~~i~Dt~G~~~~~~~~-~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~-~~~~~~l~~~~~~~~~viiV~NK~Dl~~ 167 (204)
T cd01878 90 EVLLTDTVGFIRDLPHQ-LVEAFRSTLEEVAEADLLLHVVDASDPDYEEQI-ETVEKVLKELGAEDIPMILVLNKIDLLD 167 (204)
T ss_pred eEEEeCCCccccCCCHH-HHHHHHHHHHHHhcCCeEEEEEECCCCChhhHH-HHHHHHHHHcCcCCCCEEEEEEccccCC
Confidence 79999999986532211 1111111111 2357999999999754332221 1111111222233689999999999987
Q ss_pred hhhhh
Q 024413 246 HEFAL 250 (268)
Q Consensus 246 ~~~~~ 250 (268)
.....
T Consensus 168 ~~~~~ 172 (204)
T cd01878 168 DEELE 172 (204)
T ss_pred hHHHH
Confidence 65443
No 399
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.47 E-value=1.8e-13 Score=109.75 Aligned_cols=77 Identities=21% Similarity=0.237 Sum_probs=46.9
Q ss_pred CCCEEEEeCCCCcchhhhhhHHHHHHHHH-hccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeecCCCc
Q 024413 165 HLDYVLVDTPGQIEIFTWSASGAIITEAF-ASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDV 243 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~~~~~~i~~~~-~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK~Dl 243 (268)
+.++.++|+||+.+...... .......+ ....++++++++|+.......... . ... ...+|+++|+||+|+
T Consensus 48 ~~~~~i~DtpG~~~~~~~~~-~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~--~---~~~--~~~~~vi~v~nK~D~ 119 (157)
T cd04164 48 GIPVRLIDTAGIRETEDEIE-KIGIERAREAIEEADLVLFVIDASRGLDEEDLE--I---LEL--PADKPIIVVLNKSDL 119 (157)
T ss_pred CEEEEEEECCCcCCCcchHH-HHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHH--H---HHh--hcCCCEEEEEEchhc
Confidence 44789999999876532111 11111111 123579999999998644333321 0 111 457999999999999
Q ss_pred CChhhh
Q 024413 244 AQHEFA 249 (268)
Q Consensus 244 ~~~~~~ 249 (268)
......
T Consensus 120 ~~~~~~ 125 (157)
T cd04164 120 LPDSEL 125 (157)
T ss_pred CCcccc
Confidence 876543
No 400
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.47 E-value=3.7e-13 Score=110.05 Aligned_cols=82 Identities=18% Similarity=0.250 Sum_probs=44.7
Q ss_pred CEEEEeCCCCcchhhh-hhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHH--hhCCCceeeecCCCc
Q 024413 167 DYVLVDTPGQIEIFTW-SASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY--KTRLPLVLAFNKTDV 243 (268)
Q Consensus 167 ~illlDePG~~~~~~~-~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~--~~~~p~ilV~NK~Dl 243 (268)
.+.|+|+||+.+.... ........+.+ ..+|++++|+|+...-+..+........+.... ...+|+++|+||+|+
T Consensus 49 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~--~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl 126 (170)
T cd01898 49 SFVVADIPGLIEGASEGKGLGHRFLRHI--ERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDL 126 (170)
T ss_pred eEEEEecCcccCcccccCCchHHHHHHH--HhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhc
Confidence 7899999998543111 11111222222 347999999999754111121111111011111 136899999999999
Q ss_pred CChhhhh
Q 024413 244 AQHEFAL 250 (268)
Q Consensus 244 ~~~~~~~ 250 (268)
.+.....
T Consensus 127 ~~~~~~~ 133 (170)
T cd01898 127 LDEEELF 133 (170)
T ss_pred CCchhhH
Confidence 7765443
No 401
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.47 E-value=5.8e-13 Score=118.56 Aligned_cols=134 Identities=22% Similarity=0.303 Sum_probs=86.9
Q ss_pred cCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCccccc-ccchhhHHHHHHHHHHcCCCCCCCcccch
Q 024413 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAA-NIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (268)
Q Consensus 67 ~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 145 (268)
.....++|.|+|++|||||++++++..+- +...|+++ .+.+ + +.-
T Consensus 166 p~~pTivVaG~PNVGKSSlv~~lT~AkpE-------------vA~YPFTTK~i~v---------------G---hfe--- 211 (346)
T COG1084 166 PDLPTIVVAGYPNVGKSSLVRKLTTAKPE-------------VAPYPFTTKGIHV---------------G---HFE--- 211 (346)
T ss_pred CCCCeEEEecCCCCcHHHHHHHHhcCCCc-------------cCCCCccccceeE---------------e---eee---
Confidence 36678999999999999999999997543 34455553 1111 1 000
Q ss_pred hhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHH--h-ccCCcEEEEEEcCCCcCCchhhHHHHHH
Q 024413 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAF--A-STFPTVVTYVVDTPRSANPMTFMSNMLY 222 (268)
Q Consensus 146 ~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~--~-~~~~d~vv~vvD~~~~~~~~~~~~~~~~ 222 (268)
...-.+.++||||+.|. ....+..+.++. + ...+++|+|++|.+..+...-.....+
T Consensus 212 -----------------~~~~R~QvIDTPGlLDR--Pl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L- 271 (346)
T COG1084 212 -----------------RGYLRIQVIDTPGLLDR--PLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISL- 271 (346)
T ss_pred -----------------cCCceEEEecCCcccCC--ChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHH-
Confidence 12347999999999885 222333333331 2 245899999999988766543222222
Q ss_pred HHHHHH-hhCCCceeeecCCCcCChhhhhhhhhh
Q 024413 223 ACSILY-KTRLPLVLAFNKTDVAQHEFALEVQFF 255 (268)
Q Consensus 223 ~~~~l~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~ 255 (268)
++.+. ....|+++|+||+|....+..++...+
T Consensus 272 -~~eIk~~f~~p~v~V~nK~D~~~~e~~~~~~~~ 304 (346)
T COG1084 272 -LEEIKELFKAPIVVVINKIDIADEEKLEEIEAS 304 (346)
T ss_pred -HHHHHHhcCCCeEEEEecccccchhHHHHHHHH
Confidence 23332 446899999999999987766666544
No 402
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=2e-13 Score=124.91 Aligned_cols=117 Identities=12% Similarity=0.084 Sum_probs=78.2
Q ss_pred cccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC----------CCccccccc--c-h---------
Q 024413 63 INFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV----------MTLPFAANI--D-I--------- 120 (268)
Q Consensus 63 ~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~----------~~~~~~~~~--~-~--------- 120 (268)
...+..|..++++|++|+||||+++.|.+++.+++|.|.++++|.-. .-+|+..-+ + +
T Consensus 283 sf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~ 362 (497)
T COG5265 283 SFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRP 362 (497)
T ss_pred cccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCc
Confidence 44588999999999999999999999999999999999999987531 112222211 0 0
Q ss_pred ----hhHH------HHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 121 ----RDTI------RYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 121 ----~~~~------~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
.... .+..+++.+=-+-....-..--.||||+|||++|||++..+|+++++||++-..+
T Consensus 363 ~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsald 431 (497)
T COG5265 363 DATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALD 431 (497)
T ss_pred cccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhh
Confidence 0011 1111222210000001110012399999999999999999999999999987543
No 403
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.46 E-value=4.6e-13 Score=108.49 Aligned_cols=69 Identities=17% Similarity=0.157 Sum_probs=43.7
Q ss_pred CCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCC-CceeeecCCCc
Q 024413 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRL-PLVLAFNKTDV 243 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~-p~ilV~NK~Dl 243 (268)
+..+.+|||||+.++.. .....+ ..+|++++|+|+...+...... . ...+...+. |+++|+||+|+
T Consensus 50 ~~~~~~~DtpG~~~~~~------~~~~~~--~~ad~ii~V~d~~~~~~~~~~~--~---~~~~~~~~~~~~ilv~NK~Dl 116 (164)
T cd04171 50 GKRLGFIDVPGHEKFIK------NMLAGA--GGIDLVLLVVAADEGIMPQTRE--H---LEILELLGIKRGLVVLTKADL 116 (164)
T ss_pred CcEEEEEECCChHHHHH------HHHhhh--hcCCEEEEEEECCCCccHhHHH--H---HHHHHHhCCCcEEEEEECccc
Confidence 34789999999865421 222222 3589999999997644333211 1 122233344 99999999999
Q ss_pred CCh
Q 024413 244 AQH 246 (268)
Q Consensus 244 ~~~ 246 (268)
...
T Consensus 117 ~~~ 119 (164)
T cd04171 117 VDE 119 (164)
T ss_pred cCH
Confidence 865
No 404
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.46 E-value=1.5e-12 Score=110.66 Aligned_cols=104 Identities=11% Similarity=0.065 Sum_probs=62.2
Q ss_pred eEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecc---cCC------------CCCcccccc-cchhhHHHHHHHHHHc
Q 024413 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNL---DPA------------VMTLPFAAN-IDIRDTIRYKEVMKQF 133 (268)
Q Consensus 70 ~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~---~~~------------~~~~~~~~~-~~~~~~~~~~~~l~~~ 133 (268)
.+.+|+|+||+|||||+.+|........... ..+. +.. ..+.....+ ........+.++++.
T Consensus 22 gl~~i~G~NGsGKStll~ai~~~l~~~~~~~-~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~- 99 (198)
T cd03276 22 RVNFIVGNNGSGKSAILTALTIGLGGKASDT-NRGSSLKDLIKDGESSAKITVTLKNQGLDANPLCVLSQDMARSFLTS- 99 (198)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhcCCcccc-cccccHHHHhhCCCCeEEEEEEEEcCCccCCcCCHHHHHHHHHHhcc-
Confidence 3778999999999999999875332211000 0000 000 000000000 000122345555555
Q ss_pred CCCCCCCcccchhhhcHHHHHHHHHHHHH----hcCCCEEEEeCCCCcch
Q 024413 134 NLGPNGGILTSLNLFTTKFDEVISLIERR----ADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 134 ~l~~~~~~~~~~~~lS~G~~qr~~ia~al----~~~~~illlDePG~~~~ 179 (268)
.. .....++.||+||+||++|++++ +.+|+++|+|||...-+
T Consensus 100 --~~--~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD 145 (198)
T cd03276 100 --NK--AAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMD 145 (198)
T ss_pred --cc--ccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccC
Confidence 22 22334899999999999999999 58999999999987544
No 405
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.46 E-value=1.3e-13 Score=111.20 Aligned_cols=76 Identities=22% Similarity=0.356 Sum_probs=48.3
Q ss_pred CCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeecCCCcC
Q 024413 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA 244 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK~Dl~ 244 (268)
+.++.|+||||+.++............++....+|++++++|+........+ ...+...++|+++|+||+|+.
T Consensus 42 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~-------~~~~~~~~~~~iiv~NK~Dl~ 114 (158)
T cd01879 42 GKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLERNLYL-------TLQLLELGLPVVVALNMIDEA 114 (158)
T ss_pred CeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcchhHHHH-------HHHHHHcCCCEEEEEehhhhc
Confidence 3478999999997754322222222333333568999999999652111111 233445689999999999997
Q ss_pred Chh
Q 024413 245 QHE 247 (268)
Q Consensus 245 ~~~ 247 (268)
+..
T Consensus 115 ~~~ 117 (158)
T cd01879 115 EKR 117 (158)
T ss_pred ccc
Confidence 654
No 406
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.45 E-value=3.8e-13 Score=108.04 Aligned_cols=78 Identities=26% Similarity=0.278 Sum_probs=50.3
Q ss_pred CCCEEEEeCCCCcchhhhhhHHHHHHHHH--hccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeecCCC
Q 024413 165 HLDYVLVDTPGQIEIFTWSASGAIITEAF--ASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTD 242 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~~~~~~i~~~~--~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK~D 242 (268)
+..+.++|+||+.+... .....+...+ ....+|++++++|+.......+.. ....+...+.|+++|+||+|
T Consensus 44 ~~~~~i~DtpG~~~~~~--~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~-----~~~~~~~~~~piiiv~nK~D 116 (157)
T cd01894 44 GREFILIDTGGIEPDDE--GISKEIREQAELAIEEADVILFVVDGREGLTPADEE-----IAKYLRKSKKPVILVVNKVD 116 (157)
T ss_pred CeEEEEEECCCCCCchh--HHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHHH-----HHHHHHhcCCCEEEEEECcc
Confidence 45789999999977522 1111222211 124479999999997655443321 12445556799999999999
Q ss_pred cCChhhh
Q 024413 243 VAQHEFA 249 (268)
Q Consensus 243 l~~~~~~ 249 (268)
+......
T Consensus 117 ~~~~~~~ 123 (157)
T cd01894 117 NIKEEDE 123 (157)
T ss_pred cCChHHH
Confidence 9876554
No 407
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.45 E-value=4.6e-13 Score=109.25 Aligned_cols=71 Identities=17% Similarity=0.206 Sum_probs=42.9
Q ss_pred CCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHH---hhCCCceeeecCC
Q 024413 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY---KTRLPLVLAFNKT 241 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~---~~~~p~ilV~NK~ 241 (268)
+.++.++|+||+.++.. .....+ ..++++++|+|+........ .. ......+. ..+.|+++|+||+
T Consensus 49 ~~~~~l~Dt~G~~~~~~------~~~~~~--~~~~~~v~vvd~~~~~~~~~-~~--~~~~~~~~~~~~~~~p~ilv~NK~ 117 (167)
T cd04160 49 NARLKFWDLGGQESLRS------LWDKYY--AECHAIIYVIDSTDRERFEE-SK--SALEKVLRNEALEGVPLLILANKQ 117 (167)
T ss_pred CEEEEEEECCCChhhHH------HHHHHh--CCCCEEEEEEECchHHHHHH-HH--HHHHHHHhChhhcCCCEEEEEEcc
Confidence 45789999999966422 112222 45799999999854321111 11 11011111 2478999999999
Q ss_pred CcCCh
Q 024413 242 DVAQH 246 (268)
Q Consensus 242 Dl~~~ 246 (268)
|+...
T Consensus 118 D~~~~ 122 (167)
T cd04160 118 DLPDA 122 (167)
T ss_pred ccccC
Confidence 98654
No 408
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.45 E-value=2.4e-13 Score=105.19 Aligned_cols=70 Identities=24% Similarity=0.348 Sum_probs=42.4
Q ss_pred CCCEEEEeCCCCcchhhhhhHHHHHHHHHhc-cCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeecC
Q 024413 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNK 240 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~~~~~~i~~~~~~-~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK 240 (268)
+..+.|+|+||+.+............+.++. ..+|+++|++|++..... ... ...+.+. ..+|+++|+||
T Consensus 46 ~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~--~~~---~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 46 NKKFILVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNPITE--DDK---NILRELK-NKKPIILVLNK 116 (116)
T ss_dssp TEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSHSHH--HHH---HHHHHHH-TTSEEEEEEES
T ss_pred eeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCCCCH--HHH---HHHHHHh-cCCCEEEEEcC
Confidence 4578999999997753322221222222222 557999999998762221 111 1124444 78999999999
No 409
>PRK09866 hypothetical protein; Provisional
Probab=99.44 E-value=6.9e-13 Score=127.74 Aligned_cols=75 Identities=19% Similarity=0.150 Sum_probs=51.3
Q ss_pred hcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhC--CCceeeecC
Q 024413 163 ADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTR--LPLVLAFNK 240 (268)
Q Consensus 163 ~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~--~p~ilV~NK 240 (268)
..+.+++|+||||+..+... .....+.+.+ ..+|+|+||+|+.......+.. ....+.+.+ .|+++|+||
T Consensus 227 ~~~~QIIFVDTPGIhk~~~~-~L~k~M~eqL--~eADvVLFVVDat~~~s~~Dee-----Ilk~Lkk~~K~~PVILVVNK 298 (741)
T PRK09866 227 SYPGQLTLLDTPGPNEAGQP-HLQKMLNQQL--ARASAVLAVLDYTQLKSISDEE-----VREAILAVGQSVPLYVLVNK 298 (741)
T ss_pred cccCCEEEEECCCCCCccch-HHHHHHHHHH--hhCCEEEEEEeCCCCCChhHHH-----HHHHHHhcCCCCCEEEEEEc
Confidence 34678999999999875322 1222333333 4579999999998766655522 134555556 499999999
Q ss_pred CCcCC
Q 024413 241 TDVAQ 245 (268)
Q Consensus 241 ~Dl~~ 245 (268)
+|+.+
T Consensus 299 IDl~d 303 (741)
T PRK09866 299 FDQQD 303 (741)
T ss_pred ccCCC
Confidence 99975
No 410
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.44 E-value=7.7e-13 Score=109.60 Aligned_cols=70 Identities=24% Similarity=0.341 Sum_probs=47.0
Q ss_pred CCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeecCCCcC
Q 024413 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA 244 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK~Dl~ 244 (268)
+.++.|+|+||+.++.. .....+ ..+|++++|+|+......... ..+..+...++|+++|+||+|+.
T Consensus 61 ~~~~~liDtpG~~~~~~------~~~~~~--~~~d~~i~v~d~~~~~~~~~~-----~~~~~~~~~~~~i~iv~nK~D~~ 127 (189)
T cd00881 61 DRRVNFIDTPGHEDFSS------EVIRGL--SVSDGAILVVDANEGVQPQTR-----EHLRIAREGGLPIIVAINKIDRV 127 (189)
T ss_pred CEEEEEEeCCCcHHHHH------HHHHHH--HhcCEEEEEEECCCCCcHHHH-----HHHHHHHHCCCCeEEEEECCCCc
Confidence 56799999999865421 222223 257999999999765543321 11234445689999999999998
Q ss_pred Chh
Q 024413 245 QHE 247 (268)
Q Consensus 245 ~~~ 247 (268)
.++
T Consensus 128 ~~~ 130 (189)
T cd00881 128 GEE 130 (189)
T ss_pred chh
Confidence 743
No 411
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.44 E-value=1e-12 Score=111.39 Aligned_cols=120 Identities=13% Similarity=0.055 Sum_probs=71.7
Q ss_pred EEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccchhhhcH
Q 024413 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT 150 (268)
Q Consensus 71 ~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~ 150 (268)
.++|+|++|+|||||+|+|+|...+..|.+.+..... +.. .. .+ .
T Consensus 3 kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~-----t~~----~~----------~~--------~-------- 47 (197)
T cd04104 3 NIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVET-----TMK----RT----------PY--------P-------- 47 (197)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCCccccCcccc-----ccC----ce----------ee--------e--------
Confidence 5799999999999999999998777655544321000 000 00 00 0
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhh
Q 024413 151 KFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKT 230 (268)
Q Consensus 151 G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~ 230 (268)
....+++.++|+||+.+.... .....+.......|+++++.|.+ ++..+.. ....+...
T Consensus 48 -----------~~~~~~l~l~DtpG~~~~~~~---~~~~l~~~~~~~~d~~l~v~~~~--~~~~d~~-----~~~~l~~~ 106 (197)
T cd04104 48 -----------HPKFPNVTLWDLPGIGSTAFP---PDDYLEEMKFSEYDFFIIISSTR--FSSNDVK-----LAKAIQCM 106 (197)
T ss_pred -----------cCCCCCceEEeCCCCCcccCC---HHHHHHHhCccCcCEEEEEeCCC--CCHHHHH-----HHHHHHHh
Confidence 001357899999999764221 11112222223468888876553 4443321 12445556
Q ss_pred CCCceeeecCCCcCCh
Q 024413 231 RLPLVLAFNKTDVAQH 246 (268)
Q Consensus 231 ~~p~ilV~NK~Dl~~~ 246 (268)
+.|+++|+||+|+..+
T Consensus 107 ~~~~ilV~nK~D~~~~ 122 (197)
T cd04104 107 GKKFYFVRTKVDRDLS 122 (197)
T ss_pred CCCEEEEEecccchhh
Confidence 8899999999999653
No 412
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.44 E-value=2.7e-13 Score=110.08 Aligned_cols=72 Identities=15% Similarity=0.168 Sum_probs=41.5
Q ss_pred CCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHH-HHHHHhhCCCceeeecCCCcC
Q 024413 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYA-CSILYKTRLPLVLAFNKTDVA 244 (268)
Q Consensus 166 ~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~-~~~l~~~~~p~ilV~NK~Dl~ 244 (268)
..+.|+|+||+.++.. ....++ ..++++++|+|.....+... ....... .........|+++|+||+|+.
T Consensus 50 ~~~~i~Dt~G~~~~~~------~~~~~~--~~~~~~ilv~d~~~~~s~~~-~~~~~~~~~~~~~~~~~piiiv~NK~Dl~ 120 (164)
T cd04145 50 AILDILDTAGQEEFSA------MREQYM--RTGEGFLLVFSVTDRGSFEE-VDKFHTQILRVKDRDEFPMILVGNKADLE 120 (164)
T ss_pred EEEEEEECCCCcchhH------HHHHHH--hhCCEEEEEEECCCHHHHHH-HHHHHHHHHHHhCCCCCCEEEEeeCcccc
Confidence 3578999999876522 222333 23688889998854321111 1111100 111112468999999999997
Q ss_pred Ch
Q 024413 245 QH 246 (268)
Q Consensus 245 ~~ 246 (268)
..
T Consensus 121 ~~ 122 (164)
T cd04145 121 HQ 122 (164)
T ss_pred cc
Confidence 54
No 413
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.42 E-value=2.6e-13 Score=110.44 Aligned_cols=72 Identities=17% Similarity=0.093 Sum_probs=40.3
Q ss_pred CEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeecCCCcCCh
Q 024413 167 DYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQH 246 (268)
Q Consensus 167 ~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK~Dl~~~ 246 (268)
.+.++|+||+.++.. .....++ .++.+++++|.....+......-...........+.|+++|+||+|+...
T Consensus 49 ~l~i~Dt~g~~~~~~------~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~ 120 (164)
T smart00173 49 LLDILDTAGQEEFSA------MRDQYMR--TGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESE 120 (164)
T ss_pred EEEEEECCCcccchH------HHHHHHh--hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 578999999977532 2222232 36888888887542111111000000011112236899999999999753
No 414
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=99.42 E-value=8.2e-13 Score=108.28 Aligned_cols=154 Identities=16% Similarity=0.240 Sum_probs=81.4
Q ss_pred EEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccchh-hhc
Q 024413 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN-LFT 149 (268)
Q Consensus 71 ~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-~lS 149 (268)
+++|+|++|||||||++.+.+.... ..+.+...+.. ...++..... ..-.....| .++|.||..+ .|.
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~~~~--~~~~~i~~~~G------~~~~d~~~~~--~~~~~v~~l-~~GCiCC~~~~~l~ 70 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTEQHG--RKIAVIENEFG------EVGIDNQLVV--DTDEEIIEM-NNGCICCTVRGDLI 70 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhcccC--CcEEEEecCCC------ccchhHHHHh--CCCceEEEe-CCCEeEeeCchhHH
Confidence 6789999999999999999886432 22222111110 0001000000 000011223 3577777532 233
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHH-HHHhc-cCCcEEEEEEcCCCcCCchhhHHHHHHHHHHH
Q 024413 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIIT-EAFAS-TFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (268)
Q Consensus 150 ~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~-~~~~~-~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l 227 (268)
....+.+.-..+...+|+++++|+||..++.. .....+. ..+.. ...+.+++++|+.......+.. ....
T Consensus 71 ~~l~~l~~~~~~~~~~~d~I~IEt~G~~~p~~--~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~------~~~~ 142 (158)
T cd03112 71 RALLDLLERLDAGKIAFDRIVIETTGLADPGP--VAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQ------TEAQ 142 (158)
T ss_pred HHHHHHHHHHHhccCCCCEEEEECCCcCCHHH--HHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhcc------HHHH
Confidence 33322111111123579999999999998743 2211111 12222 3469999999996544322211 1223
Q ss_pred HhhCCCceeeecCCCc
Q 024413 228 YKTRLPLVLAFNKTDV 243 (268)
Q Consensus 228 ~~~~~p~ilV~NK~Dl 243 (268)
.|.....++|+||+|+
T Consensus 143 ~Qi~~ad~ivlnk~dl 158 (158)
T cd03112 143 SQIAFADRILLNKTDL 158 (158)
T ss_pred HHHHHCCEEEEecccC
Confidence 4666788999999996
No 415
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.42 E-value=7.2e-13 Score=112.57 Aligned_cols=91 Identities=20% Similarity=0.249 Sum_probs=58.4
Q ss_pred cccCC-eEEEEEecCCCCHHHHHHHHH--------hcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCC
Q 024413 65 FKRKP-VIIIVVGMAGSGKTTFMHRLV--------CHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNL 135 (268)
Q Consensus 65 ~~~~g-~~v~iiG~~GsGKSTLl~~l~--------g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 135 (268)
.+.++ .+++|+||||+|||||++.|. |...|....+. .++...+ +..++.
T Consensus 23 ~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~~----------~~~~~~~-----------~~~lg~ 81 (200)
T cd03280 23 QLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGSS----------LPVFENI-----------FADIGD 81 (200)
T ss_pred EECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCcccccccc----------CcCccEE-----------EEecCc
Confidence 36677 479999999999999999998 54444221111 1110000 001111
Q ss_pred CCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 136 GPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 136 ~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
. ......++.+|+||+|+..+++++ .+|+++|+|||+..-.
T Consensus 82 ~--~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD 122 (200)
T cd03280 82 E--QSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTD 122 (200)
T ss_pred h--hhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCC
Confidence 1 011122678999999999999875 7999999999987543
No 416
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.42 E-value=3.7e-12 Score=106.00 Aligned_cols=126 Identities=16% Similarity=0.174 Sum_probs=75.0
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccch
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 145 (268)
..+...++|+|++|+|||||+|.|.+...... ....+..+ ... ...
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~-----------~~~~~~~t-~~~-------------------~~~--- 60 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLAR-----------TSKTPGRT-QLI-------------------NFF--- 60 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCccc-----------ccCCCCcc-eEE-------------------EEE---
Confidence 35567889999999999999999998631100 00000000 000 000
Q ss_pred hhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhh----hhHHHHHHHHHhc-cCCcEEEEEEcCCCcCCchhhHHHH
Q 024413 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTW----SASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNM 220 (268)
Q Consensus 146 ~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~----~~~~~~i~~~~~~-~~~d~vv~vvD~~~~~~~~~~~~~~ 220 (268)
..+.++.|+|+||+...... ......+..+++. ...+++++++|+...+...+..
T Consensus 61 -----------------~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~--- 120 (179)
T TIGR03598 61 -----------------EVNDGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLE--- 120 (179)
T ss_pred -----------------EeCCcEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHH---
Confidence 01347899999997543211 1112223334433 2468999999998765544421
Q ss_pred HHHHHHHHhhCCCceeeecCCCcCChh
Q 024413 221 LYACSILYKTRLPLVLAFNKTDVAQHE 247 (268)
Q Consensus 221 ~~~~~~l~~~~~p~ilV~NK~Dl~~~~ 247 (268)
....+...++|+++|+||+|+..+.
T Consensus 121 --~~~~~~~~~~pviiv~nK~D~~~~~ 145 (179)
T TIGR03598 121 --MLEWLRERGIPVLIVLTKADKLKKS 145 (179)
T ss_pred --HHHHHHHcCCCEEEEEECcccCCHH
Confidence 1234455689999999999998654
No 417
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.41 E-value=2.7e-13 Score=125.50 Aligned_cols=125 Identities=21% Similarity=0.325 Sum_probs=87.3
Q ss_pred CCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccchhh
Q 024413 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (268)
Q Consensus 68 ~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 147 (268)
.+..++|+|.|++|||||+|.|+|..+. +++..++++ +|.... .+ .
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~------------Iv~~~aGTT----RD~I~~-----~~--------e----- 222 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERV------------IVSDIAGTT----RDSIDI-----EF--------E----- 222 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceE------------EecCCCCcc----ccceee-----eE--------E-----
Confidence 5688999999999999999999998776 455555553 221110 00 0
Q ss_pred hcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhh--hhHHHHHHHHHh-ccCCcEEEEEEcCCCcCCchhhHHHHHHHH
Q 024413 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTW--SASGAIITEAFA-STFPTVVTYVVDTPRSANPMTFMSNMLYAC 224 (268)
Q Consensus 148 lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~--~~~~~~i~~~~~-~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~ 224 (268)
..+.++.|+||+|+.....- +.+...+.+.++ -..++++++|+|++.++..++... +
T Consensus 223 ---------------~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~i-----a 282 (444)
T COG1160 223 ---------------RDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRI-----A 282 (444)
T ss_pred ---------------ECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHH-----H
Confidence 12567999999999764211 111122222222 255899999999999988887432 4
Q ss_pred HHHHhhCCCceeeecCCCcCCh
Q 024413 225 SILYKTRLPLVLAFNKTDVAQH 246 (268)
Q Consensus 225 ~~l~~~~~p~ilV~NK~Dl~~~ 246 (268)
..+...++++|+|+||||++.+
T Consensus 283 ~~i~~~g~~~vIvvNKWDl~~~ 304 (444)
T COG1160 283 GLIEEAGRGIVIVVNKWDLVEE 304 (444)
T ss_pred HHHHHcCCCeEEEEEccccCCc
Confidence 6677889999999999999886
No 418
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.41 E-value=3e-13 Score=109.75 Aligned_cols=69 Identities=14% Similarity=0.120 Sum_probs=40.3
Q ss_pred CEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHH----hhCCCceeeecCCC
Q 024413 167 DYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY----KTRLPLVLAFNKTD 242 (268)
Q Consensus 167 ~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~----~~~~p~ilV~NK~D 242 (268)
.+.|||+||+.++.. ....++ ..++++++++|.....+... . ......+. ..+.|+++|+||+|
T Consensus 50 ~l~i~Dt~G~~~~~~------~~~~~~--~~~~~~ilv~d~~~~~s~~~-~---~~~~~~i~~~~~~~~~piilv~nK~D 117 (163)
T cd04136 50 MLEILDTAGTEQFTA------MRDLYI--KNGQGFVLVYSITSQSSFND-L---QDLREQILRVKDTENVPMVLVGNKCD 117 (163)
T ss_pred EEEEEECCCccccch------HHHHHh--hcCCEEEEEEECCCHHHHHH-H---HHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 567899999976532 122223 34688888888754221111 1 11112221 23689999999999
Q ss_pred cCChh
Q 024413 243 VAQHE 247 (268)
Q Consensus 243 l~~~~ 247 (268)
+...+
T Consensus 118 l~~~~ 122 (163)
T cd04136 118 LEDER 122 (163)
T ss_pred ccccc
Confidence 97543
No 419
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.41 E-value=1.4e-12 Score=119.97 Aligned_cols=131 Identities=20% Similarity=0.255 Sum_probs=72.4
Q ss_pred CCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccchhh
Q 024413 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (268)
Q Consensus 68 ~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 147 (268)
.+..++|+|++|+|||||+|+|++.... + .+.++.+ ++... ..+.+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~------v-------~~~~~tT-~d~~~--------~~i~~------------ 233 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVY------A-------ADQLFAT-LDPTT--------RRLDL------------ 233 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCcee------e-------ccCCccc-cCCEE--------EEEEe------------
Confidence 4588999999999999999999985311 1 1111110 00000 00000
Q ss_pred hcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHh-ccCCcEEEEEEcCCCcCCchhhHHHHHHHHHH
Q 024413 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFA-STFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (268)
Q Consensus 148 lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~-~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~ 226 (268)
-.+.++.|+||||+....+.... ..+...+. ...+|++++|+|++....... .......+..
T Consensus 234 ---------------~~~~~i~l~DT~G~~~~l~~~li-e~f~~tle~~~~ADlil~VvD~s~~~~~~~-~~~~~~~L~~ 296 (351)
T TIGR03156 234 ---------------PDGGEVLLTDTVGFIRDLPHELV-AAFRATLEEVREADLLLHVVDASDPDREEQ-IEAVEKVLEE 296 (351)
T ss_pred ---------------CCCceEEEEecCcccccCCHHHH-HHHHHHHHHHHhCCEEEEEEECCCCchHHH-HHHHHHHHHH
Confidence 12457999999998432112111 11222221 245899999999975432222 1111111222
Q ss_pred HHhhCCCceeeecCCCcCChhhh
Q 024413 227 LYKTRLPLVLAFNKTDVAQHEFA 249 (268)
Q Consensus 227 l~~~~~p~ilV~NK~Dl~~~~~~ 249 (268)
+...++|+++|+||+|+.+..+.
T Consensus 297 l~~~~~piIlV~NK~Dl~~~~~v 319 (351)
T TIGR03156 297 LGAEDIPQLLVYNKIDLLDEPRI 319 (351)
T ss_pred hccCCCCEEEEEEeecCCChHhH
Confidence 22337899999999999875443
No 420
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.41 E-value=3.2e-12 Score=120.76 Aligned_cols=143 Identities=11% Similarity=0.105 Sum_probs=102.2
Q ss_pred CCcccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC------------------------Cccc
Q 024413 59 GSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM------------------------TLPF 114 (268)
Q Consensus 59 ~~~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~------------------------~~~~ 114 (268)
.....+.+++|++++|.|.-|||+|-|+++|.|..++.+|.+.++|.+.... ..+.
T Consensus 275 ~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI 354 (500)
T COG1129 275 VRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSI 354 (500)
T ss_pred eeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcH
Confidence 3455677999999999999999999999999999999999999999864321 1122
Q ss_pred ccccch---------------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 115 AANIDI---------------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 115 ~~~~~~---------------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
.+|+.+ +....++++.+.+++...... ..+..||||.+||+.||+.+..+|+++|+|||+-.=+
T Consensus 355 ~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~-~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGID 433 (500)
T COG1129 355 AENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPE-QPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGID 433 (500)
T ss_pred HHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCcc-chhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcc
Confidence 222221 122346667788888643322 3388999999999999999999999999999987533
Q ss_pred hhhhhHHHHHHHHHhccCCcEEE
Q 024413 180 FTWSASGAIITEAFASTFPTVVT 202 (268)
Q Consensus 180 ~~~~~~~~~i~~~~~~~~~d~vv 202 (268)
-.-......++..++.....+++
T Consensus 434 VGAK~eIy~li~~lA~~G~ail~ 456 (500)
T COG1129 434 VGAKAEIYRLIRELAAEGKAILM 456 (500)
T ss_pred cchHHHHHHHHHHHHHCCCEEEE
Confidence 23334455555555554333333
No 421
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.41 E-value=8.1e-13 Score=124.94 Aligned_cols=126 Identities=22% Similarity=0.328 Sum_probs=75.9
Q ss_pred cccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccc
Q 024413 65 FKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTS 144 (268)
Q Consensus 65 ~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 144 (268)
..+.+..++|+|++|+|||||+|.|++.... .+...+.++. +... ....
T Consensus 199 ~~~~g~kVvIvG~~nvGKSSLiN~L~~~~~a------------ivs~~pgtTr-d~~~----------------~~i~-- 247 (442)
T TIGR00450 199 KLDDGFKLAIVGSPNVGKSSLLNALLKQDRA------------IVSDIKGTTR-DVVE----------------GDFE-- 247 (442)
T ss_pred HhhcCCEEEEECCCCCcHHHHHHHHhCCCCc------------ccCCCCCcEE-EEEE----------------EEEE--
Confidence 3677889999999999999999999986432 1111222110 0000 0000
Q ss_pred hhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHH-hccCCcEEEEEEcCCCcCCchhhHHHHHHH
Q 024413 145 LNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAF-ASTFPTVVTYVVDTPRSANPMTFMSNMLYA 223 (268)
Q Consensus 145 ~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~-~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~ 223 (268)
..+.++.|+||||+.+..... ....+.... ....+|++++|+|+....+..+.+
T Consensus 248 ------------------~~g~~v~l~DTaG~~~~~~~i-e~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~~------ 302 (442)
T TIGR00450 248 ------------------LNGILIKLLDTAGIREHADFV-ERLGIEKSFKAIKQADLVIYVLDASQPLTKDDFL------ 302 (442)
T ss_pred ------------------ECCEEEEEeeCCCcccchhHH-HHHHHHHHHHHHhhCCEEEEEEECCCCCChhHHH------
Confidence 124468999999997652211 111111111 124589999999997655443321
Q ss_pred HHHHHhhCCCceeeecCCCcCCh
Q 024413 224 CSILYKTRLPLVLAFNKTDVAQH 246 (268)
Q Consensus 224 ~~~l~~~~~p~ilV~NK~Dl~~~ 246 (268)
...+...++|+++|+||+|+...
T Consensus 303 l~~~~~~~~piIlV~NK~Dl~~~ 325 (442)
T TIGR00450 303 IIDLNKSKKPFILVLNKIDLKIN 325 (442)
T ss_pred HHHHhhCCCCEEEEEECccCCCc
Confidence 23333457899999999999754
No 422
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.41 E-value=1.1e-12 Score=123.61 Aligned_cols=76 Identities=26% Similarity=0.278 Sum_probs=50.4
Q ss_pred CCCEEEEeCCCCcchhhhhhHHHHHHHHH--hccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeecCCC
Q 024413 165 HLDYVLVDTPGQIEIFTWSASGAIITEAF--ASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTD 242 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~~~~~~i~~~~--~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK~D 242 (268)
+..+.|+||||+..... .....+.... ....+|++++|+|+..+....+.. ...++...++|+++|+||+|
T Consensus 46 ~~~~~liDTpG~~~~~~--~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~-----i~~~l~~~~~piilVvNK~D 118 (429)
T TIGR03594 46 GREFILIDTGGIEEDDD--GLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEE-----IAKWLRKSGKPVILVANKID 118 (429)
T ss_pred CeEEEEEECCCCCCcch--hHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHH-----HHHHHHHhCCCEEEEEECcc
Confidence 45699999999854311 1111222221 124589999999998776665522 13556667899999999999
Q ss_pred cCChh
Q 024413 243 VAQHE 247 (268)
Q Consensus 243 l~~~~ 247 (268)
+.+.+
T Consensus 119 ~~~~~ 123 (429)
T TIGR03594 119 GKKED 123 (429)
T ss_pred CCccc
Confidence 97654
No 423
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.41 E-value=1.8e-12 Score=106.29 Aligned_cols=86 Identities=20% Similarity=0.188 Sum_probs=47.6
Q ss_pred CCCEEEEeCCCCcchhhhh-hHHHHHHHHHhccCCcEEEEEEcCCCcC-----CchhhHHHHHHHHHHHH-------hhC
Q 024413 165 HLDYVLVDTPGQIEIFTWS-ASGAIITEAFASTFPTVVTYVVDTPRSA-----NPMTFMSNMLYACSILY-------KTR 231 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~-~~~~~i~~~~~~~~~d~vv~vvD~~~~~-----~~~~~~~~~~~~~~~l~-------~~~ 231 (268)
+.++.|+|+||+.+..... .........+ ..+|++++|+|+.... ...+............. ...
T Consensus 43 ~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (176)
T cd01881 43 GARIQVADIPGLIEGASEGRGLGNQFLAHI--RRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTA 120 (176)
T ss_pred CCeEEEEeccccchhhhcCCCccHHHHHHH--hccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhh
Confidence 4578999999985432211 1111222222 3479999999996542 22211111110011111 147
Q ss_pred CCceeeecCCCcCChhhhhhh
Q 024413 232 LPLVLAFNKTDVAQHEFALEV 252 (268)
Q Consensus 232 ~p~ilV~NK~Dl~~~~~~~~~ 252 (268)
+|+++|+||+|+...+.....
T Consensus 121 ~p~ivv~NK~Dl~~~~~~~~~ 141 (176)
T cd01881 121 KPVIYVLNKIDLDDAEELEEE 141 (176)
T ss_pred CCeEEEEEchhcCchhHHHHH
Confidence 899999999999876655443
No 424
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.41 E-value=2.6e-12 Score=104.49 Aligned_cols=77 Identities=19% Similarity=0.234 Sum_probs=47.6
Q ss_pred CCCEEEEeCCCCcchhhhhhH--HHHHHHHH-hccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeecCC
Q 024413 165 HLDYVLVDTPGQIEIFTWSAS--GAIITEAF-ASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKT 241 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~~~--~~~i~~~~-~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK~ 241 (268)
+.++.++|+||+.+....... .......+ ....+|++++++|+.......... ....+...+.|+++|+||+
T Consensus 49 ~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~-----~~~~~~~~~~~~iiv~nK~ 123 (174)
T cd01895 49 GKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLR-----IAGLILEEGKALVIVVNKW 123 (174)
T ss_pred CeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHH-----HHHHHHhcCCCEEEEEecc
Confidence 456899999998765221111 11111111 124579999999997665543311 1233444579999999999
Q ss_pred CcCCh
Q 024413 242 DVAQH 246 (268)
Q Consensus 242 Dl~~~ 246 (268)
|+.+.
T Consensus 124 Dl~~~ 128 (174)
T cd01895 124 DLVEK 128 (174)
T ss_pred ccCCc
Confidence 99866
No 425
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.41 E-value=2.5e-12 Score=105.64 Aligned_cols=75 Identities=17% Similarity=0.164 Sum_probs=42.5
Q ss_pred CCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeecCCCcC
Q 024413 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA 244 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK~Dl~ 244 (268)
+.++.++|+||+..+.. .....+ ..++++++++|+........................+|+++|+||+|+.
T Consensus 57 ~~~~~~~D~~G~~~~~~------~~~~~~--~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 128 (173)
T cd04155 57 GFKLNVWDIGGQRAIRP------YWRNYF--ENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLA 128 (173)
T ss_pred CEEEEEEECCCCHHHHH------HHHHHh--cCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCc
Confidence 34688999999854311 112222 3479999999996422111111101110111123468999999999997
Q ss_pred Chh
Q 024413 245 QHE 247 (268)
Q Consensus 245 ~~~ 247 (268)
...
T Consensus 129 ~~~ 131 (173)
T cd04155 129 TAA 131 (173)
T ss_pred cCC
Confidence 643
No 426
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.40 E-value=5.2e-13 Score=109.09 Aligned_cols=72 Identities=18% Similarity=0.174 Sum_probs=41.9
Q ss_pred CEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeecCCCcCCh
Q 024413 167 DYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQH 246 (268)
Q Consensus 167 ~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK~Dl~~~ 246 (268)
++.|+|+||+..+.. .....+ ..+|++++++|......... ....+.........+.|+++|+||+|+...
T Consensus 53 ~l~i~D~~G~~~~~~------~~~~~~--~~~d~~llv~d~~~~~s~~~-~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 123 (165)
T cd01864 53 KLQIWDTAGQERFRT------ITQSYY--RSANGAIIAYDITRRSSFES-VPHWIEEVEKYGASNVVLLLIGNKCDLEEQ 123 (165)
T ss_pred EEEEEECCChHHHHH------HHHHHh--ccCCEEEEEEECcCHHHHHh-HHHHHHHHHHhCCCCCcEEEEEECcccccc
Confidence 689999999855421 111222 34799999999965322111 111111111112346899999999999765
Q ss_pred h
Q 024413 247 E 247 (268)
Q Consensus 247 ~ 247 (268)
+
T Consensus 124 ~ 124 (165)
T cd01864 124 R 124 (165)
T ss_pred c
Confidence 4
No 427
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.40 E-value=3.9e-13 Score=110.26 Aligned_cols=144 Identities=16% Similarity=0.116 Sum_probs=100.5
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC--------------------Ccccccccch--hhH
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM--------------------TLPFAANIDI--RDT 123 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~--------------------~~~~~~~~~~--~~~ 123 (268)
+..|+++-++||||||||||+-.++|+.+. +|+|.+.|.+.... .++....+.. .+.
T Consensus 22 v~aGe~~HliGPNGaGKSTLLA~lAGm~~~-sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~qP~~ 100 (248)
T COG4138 22 VRAGEILHLVGPNGAGKSTLLARMAGMTSG-SGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLHQPDK 100 (248)
T ss_pred cccceEEEEECCCCccHHHHHHHHhCCCCC-CceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhhcCchH
Confidence 788999999999999999999999998654 89999988764311 0111111111 121
Q ss_pred ---HHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhc-----CC--CEEEEeCCCCcchhhhhhHHHHHHHHH
Q 024413 124 ---IRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRAD-----HL--DYVLVDTPGQIEIFTWSASGAIITEAF 193 (268)
Q Consensus 124 ---~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~-----~~--~illlDePG~~~~~~~~~~~~~i~~~~ 193 (268)
..++++...++|++..... +++||||+=||+.+|....+ || +++|||||-...+.........+...+
T Consensus 101 ~~a~~i~~i~~~L~l~DKL~Rs--~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~ 178 (248)
T COG4138 101 TRTELLNDVAGALALDDKLGRS--TNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSAL 178 (248)
T ss_pred HHHHHHHHHHhhhcccchhhhh--hhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHH
Confidence 2466778889999877766 99999999999998876643 33 689999997644433333444555555
Q ss_pred hccCCcEEEEEEcCCCcCC
Q 024413 194 ASTFPTVVTYVVDTPRSAN 212 (268)
Q Consensus 194 ~~~~~d~vv~vvD~~~~~~ 212 (268)
......+|+--+|-.+.+.
T Consensus 179 c~~G~~vims~HDLNhTLr 197 (248)
T COG4138 179 CQQGLAIVMSSHDLNHTLR 197 (248)
T ss_pred HhCCcEEEEeccchhhHHH
Confidence 5555677777777755443
No 428
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.40 E-value=1.9e-12 Score=115.09 Aligned_cols=69 Identities=17% Similarity=0.213 Sum_probs=49.6
Q ss_pred CCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeecCCCcC
Q 024413 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA 244 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK~Dl~ 244 (268)
+.++.|+||||..++.. .....+ ..+|++++|+|+..+....+. ..+..+...++|.++|+||+|+.
T Consensus 63 ~~~i~liDTPG~~df~~------~~~~~l--~~aD~ailVVDa~~g~~~~t~-----~~~~~~~~~~~p~ivviNK~D~~ 129 (270)
T cd01886 63 DHRINIIDTPGHVDFTI------EVERSL--RVLDGAVAVFDAVAGVEPQTE-----TVWRQADRYNVPRIAFVNKMDRT 129 (270)
T ss_pred CEEEEEEECCCcHHHHH------HHHHHH--HHcCEEEEEEECCCCCCHHHH-----HHHHHHHHcCCCEEEEEECCCCC
Confidence 56899999999876532 222222 346999999999887765542 12355567789999999999997
Q ss_pred Ch
Q 024413 245 QH 246 (268)
Q Consensus 245 ~~ 246 (268)
+.
T Consensus 130 ~a 131 (270)
T cd01886 130 GA 131 (270)
T ss_pred CC
Confidence 53
No 429
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.40 E-value=3.4e-13 Score=110.39 Aligned_cols=73 Identities=12% Similarity=0.145 Sum_probs=40.7
Q ss_pred CCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHh---hCCCceeeecCCC
Q 024413 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK---TRLPLVLAFNKTD 242 (268)
Q Consensus 166 ~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~---~~~p~ilV~NK~D 242 (268)
..+.++|+||+..+.. ....++ ..++++++|+|.....+... ............. .++|+++|+||+|
T Consensus 49 ~~l~i~Dt~G~~~~~~------~~~~~~--~~~~~~ilv~d~~~~~s~~~-~~~~~~~i~~~~~~~~~~~piilv~nK~D 119 (165)
T cd04140 49 CTLQITDTTGSHQFPA------MQRLSI--SKGHAFILVYSVTSKQSLEE-LKPIYELICEIKGNNIEKIPIMLVGNKCD 119 (165)
T ss_pred EEEEEEECCCCCcchH------HHHHHh--hcCCEEEEEEECCCHHHHHH-HHHHHHHHHHHhcCCCCCCCEEEEEECcc
Confidence 3688999999976521 111122 34678888888754322111 1111110111111 4689999999999
Q ss_pred cCChh
Q 024413 243 VAQHE 247 (268)
Q Consensus 243 l~~~~ 247 (268)
+.+.+
T Consensus 120 l~~~~ 124 (165)
T cd04140 120 ESHKR 124 (165)
T ss_pred ccccC
Confidence 97643
No 430
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.39 E-value=4.1e-12 Score=118.36 Aligned_cols=124 Identities=25% Similarity=0.347 Sum_probs=72.2
Q ss_pred EEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccchhhhcH
Q 024413 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT 150 (268)
Q Consensus 71 ~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~ 150 (268)
-|+|+|.++||||||+|.|++.. + .+...|+++.... .....
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k-~------------~vs~~p~TT~~p~------------------~Giv~------- 202 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAK-P------------KVADYPFTTLVPN------------------LGVVR------- 202 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCc-c------------cccCCCCCccCcE------------------EEEEE-------
Confidence 48999999999999999999854 2 2233344321100 00000
Q ss_pred HHHHHHHHHHHHhcC-CCEEEEeCCCCcchhhhhh-HHHHHHHHHhccCCcEEEEEEcCCCc--CCchhhHHHHHHHHHH
Q 024413 151 KFDEVISLIERRADH-LDYVLVDTPGQIEIFTWSA-SGAIITEAFASTFPTVVTYVVDTPRS--ANPMTFMSNMLYACSI 226 (268)
Q Consensus 151 G~~qr~~ia~al~~~-~~illlDePG~~~~~~~~~-~~~~i~~~~~~~~~d~vv~vvD~~~~--~~~~~~~~~~~~~~~~ 226 (268)
..+ ..++|+|+||+.+...... +...+.+++ ..++++++|+|+... .++..... .....
T Consensus 203 ------------~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i--~radvlL~VVD~s~~~~~d~~e~~~---~l~~e 265 (390)
T PRK12298 203 ------------VDDERSFVVADIPGLIEGASEGAGLGIRFLKHL--ERCRVLLHLIDIAPIDGSDPVENAR---IIINE 265 (390)
T ss_pred ------------eCCCcEEEEEeCCCccccccchhhHHHHHHHHH--HhCCEEEEEeccCcccccChHHHHH---HHHHH
Confidence 112 2599999999987532211 222333333 457999999998622 11211111 11122
Q ss_pred HHh-----hCCCceeeecCCCcCChhhh
Q 024413 227 LYK-----TRLPLVLAFNKTDVAQHEFA 249 (268)
Q Consensus 227 l~~-----~~~p~ilV~NK~Dl~~~~~~ 249 (268)
+.. ..+|.++|+||+|+...++.
T Consensus 266 L~~~~~~L~~kP~IlVlNKiDl~~~~el 293 (390)
T PRK12298 266 LEKYSPKLAEKPRWLVFNKIDLLDEEEA 293 (390)
T ss_pred HHhhhhhhcCCCEEEEEeCCccCChHHH
Confidence 222 36899999999999876544
No 431
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.39 E-value=4.7e-13 Score=108.67 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=22.0
Q ss_pred EEEEEecCCCCHHHHHHHHHhcccC
Q 024413 71 IIIVVGMAGSGKTTFMHRLVCHTQS 95 (268)
Q Consensus 71 ~v~iiG~~GsGKSTLl~~l~g~~~~ 95 (268)
.++++|++|+|||||++.+.+...+
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~ 26 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFV 26 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC
Confidence 5799999999999999999986544
No 432
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.38 E-value=1.6e-12 Score=103.95 Aligned_cols=71 Identities=18% Similarity=0.178 Sum_probs=41.7
Q ss_pred CCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHH---HhhCCCceeeecCCC
Q 024413 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL---YKTRLPLVLAFNKTD 242 (268)
Q Consensus 166 ~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l---~~~~~p~ilV~NK~D 242 (268)
..+.++|+||+..+.. ....++ ..+|++++++|+.... .+..........+ ...++|+++|+||+|
T Consensus 44 ~~~~~~D~~g~~~~~~------~~~~~~--~~~d~ii~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D 112 (159)
T cd04159 44 VTLKVWDLGGQPRFRS------MWERYC--RGVNAIVYVVDAADRT---ALEAAKNELHDLLEKPSLEGIPLLVLGNKND 112 (159)
T ss_pred EEEEEEECCCCHhHHH------HHHHHH--hcCCEEEEEEECCCHH---HHHHHHHHHHHHHcChhhcCCCEEEEEeCcc
Confidence 4689999999865421 222222 3479999999985421 1111000001111 124689999999999
Q ss_pred cCChh
Q 024413 243 VAQHE 247 (268)
Q Consensus 243 l~~~~ 247 (268)
+.+..
T Consensus 113 ~~~~~ 117 (159)
T cd04159 113 LPGAL 117 (159)
T ss_pred ccCCc
Confidence 87654
No 433
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.38 E-value=9.3e-13 Score=108.39 Aligned_cols=72 Identities=19% Similarity=0.159 Sum_probs=42.6
Q ss_pred CCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHH----hhCCCceeeecCC
Q 024413 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY----KTRLPLVLAFNKT 241 (268)
Q Consensus 166 ~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~----~~~~p~ilV~NK~ 241 (268)
..+.|||+||+.++.. .+...+ ...+|++++++|........... .....+. ..++|+++|+||+
T Consensus 51 ~~~~i~Dt~G~~~~~~------~~~~~~-~~~~d~~i~v~d~~~~~s~~~~~----~~~~~~~~~~~~~~~p~iiv~nK~ 119 (170)
T cd04115 51 IKVQLWDTAGQERFRK------SMVQHY-YRNVHAVVFVYDVTNMASFHSLP----SWIEECEQHSLPNEVPRILVGNKC 119 (170)
T ss_pred EEEEEEeCCChHHHHH------hhHHHh-hcCCCEEEEEEECCCHHHHHhHH----HHHHHHHHhcCCCCCCEEEEEECc
Confidence 3689999999865421 112221 13479999999996432222111 1111111 2468999999999
Q ss_pred CcCChhh
Q 024413 242 DVAQHEF 248 (268)
Q Consensus 242 Dl~~~~~ 248 (268)
|+....+
T Consensus 120 Dl~~~~~ 126 (170)
T cd04115 120 DLREQIQ 126 (170)
T ss_pred cchhhcC
Confidence 9865443
No 434
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.38 E-value=6.9e-12 Score=108.54 Aligned_cols=75 Identities=15% Similarity=0.145 Sum_probs=52.2
Q ss_pred CCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeecCCCcC
Q 024413 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA 244 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK~Dl~ 244 (268)
+..+.|+|+||..++.. .....+....+|++++|+|+..+....+.. .+.++...++|.++|+||+|++
T Consensus 83 ~~~i~liDtpG~~~~~~------~~~~~~~~~~~D~~llVvda~~g~~~~d~~-----~l~~l~~~~ip~ivvvNK~D~~ 151 (224)
T cd04165 83 SKLVTFIDLAGHERYLK------TTLFGLTGYAPDYAMLVVAANAGIIGMTKE-----HLGLALALNIPVFVVVTKIDLA 151 (224)
T ss_pred CcEEEEEECCCcHHHHH------HHHHhhcccCCCEEEEEEECCCCCcHHHHH-----HHHHHHHcCCCEEEEEECcccc
Confidence 45789999999865422 222223223579999999998876655422 1355667789999999999998
Q ss_pred Chhhhh
Q 024413 245 QHEFAL 250 (268)
Q Consensus 245 ~~~~~~ 250 (268)
++++..
T Consensus 152 ~~~~~~ 157 (224)
T cd04165 152 PANILQ 157 (224)
T ss_pred CHHHHH
Confidence 765443
No 435
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.38 E-value=9.1e-13 Score=107.69 Aligned_cols=70 Identities=19% Similarity=0.161 Sum_probs=42.7
Q ss_pred CEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHH--hhCCCceeeecCCCcC
Q 024413 167 DYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY--KTRLPLVLAFNKTDVA 244 (268)
Q Consensus 167 ~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~--~~~~p~ilV~NK~Dl~ 244 (268)
.+.++|+||+.++.. ... .....+|++++++|.... ..+..........+. ..++|+++|+||+|+.
T Consensus 49 ~l~~~D~~g~~~~~~-------~~~-~~~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 117 (171)
T cd00157 49 NLGLWDTAGQEEYDR-------LRP-LSYPNTDVFLICFSVDSP---SSFENVKTKWIPEIRHYCPNVPIILVGTKIDLR 117 (171)
T ss_pred EEEEEeCCCcccccc-------cch-hhcCCCCEEEEEEECCCH---HHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhh
Confidence 589999999976521 111 111457999999998642 222211111112222 2369999999999997
Q ss_pred Chh
Q 024413 245 QHE 247 (268)
Q Consensus 245 ~~~ 247 (268)
..+
T Consensus 118 ~~~ 120 (171)
T cd00157 118 DDE 120 (171)
T ss_pred hch
Confidence 655
No 436
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.38 E-value=2.3e-12 Score=106.63 Aligned_cols=69 Identities=23% Similarity=0.241 Sum_probs=41.5
Q ss_pred CCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHh----hCCCceeeecCC
Q 024413 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK----TRLPLVLAFNKT 241 (268)
Q Consensus 166 ~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~----~~~p~ilV~NK~ 241 (268)
..+.|||+||+.++.. ....++ ..++++++|+|... +.++.. +......+.. .+.|+++|+||+
T Consensus 63 ~~~~i~Dt~G~~~~~~------~~~~~~--~~~~~~i~v~d~~~---~~s~~~-~~~~~~~i~~~~~~~~~piiiv~nK~ 130 (180)
T cd04127 63 IHLQLWDTAGQERFRS------LTTAFF--RDAMGFLLIFDLTN---EQSFLN-VRNWMSQLQTHAYCENPDIVLCGNKA 130 (180)
T ss_pred EEEEEEeCCChHHHHH------HHHHHh--CCCCEEEEEEECCC---HHHHHH-HHHHHHHHHHhcCCCCCcEEEEEeCc
Confidence 4689999999865421 222222 35799999999854 222211 1111122222 357899999999
Q ss_pred CcCCh
Q 024413 242 DVAQH 246 (268)
Q Consensus 242 Dl~~~ 246 (268)
|+.+.
T Consensus 131 Dl~~~ 135 (180)
T cd04127 131 DLEDQ 135 (180)
T ss_pred cchhc
Confidence 99754
No 437
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.38 E-value=2.9e-12 Score=104.39 Aligned_cols=69 Identities=20% Similarity=0.351 Sum_probs=46.0
Q ss_pred CCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeecCCCcC
Q 024413 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA 244 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK~Dl~ 244 (268)
+.++.|+||||+..+.. ..... ...+|++++++|+........+. ....+...++|+++|+||+|+.
T Consensus 49 ~~~~~iiDtpG~~~~~~------~~~~~--~~~~d~il~v~d~~~~~~~~~~~-----~~~~~~~~~~p~ivv~NK~Dl~ 115 (168)
T cd01887 49 IPGITFIDTPGHEAFTN------MRARG--ASLTDIAILVVAADDGVMPQTIE-----AIKLAKAANVPFIVALNKIDKP 115 (168)
T ss_pred cceEEEEeCCCcHHHHH------HHHHH--HhhcCEEEEEEECCCCccHHHHH-----HHHHHHHcCCCEEEEEEceecc
Confidence 56899999999865421 11111 13579999999997654333221 1234455789999999999997
Q ss_pred Ch
Q 024413 245 QH 246 (268)
Q Consensus 245 ~~ 246 (268)
..
T Consensus 116 ~~ 117 (168)
T cd01887 116 NA 117 (168)
T ss_pred cc
Confidence 53
No 438
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.38 E-value=9.7e-12 Score=108.41 Aligned_cols=78 Identities=13% Similarity=0.090 Sum_probs=51.0
Q ss_pred CCCEEEEeCCCCcchhhh---h---h-HHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceee
Q 024413 165 HLDYVLVDTPGQIEIFTW---S---A-SGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLA 237 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~---~---~-~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV 237 (268)
-|++.|+|+||+...... . . ....+..++ ....+++++|+|+...+...+.. ...+.+.....|+++|
T Consensus 124 ~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi-~~~~~IIL~Vvda~~d~~~~d~l----~ia~~ld~~~~rti~V 198 (240)
T smart00053 124 VLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFI-SKEECLILAVTPANVDLANSDAL----KLAKEVDPQGERTIGV 198 (240)
T ss_pred CCceEEEeCCCccccccCCccHHHHHHHHHHHHHHH-hCccCeEEEEEECCCCCCchhHH----HHHHHHHHcCCcEEEE
Confidence 388999999999642110 1 1 112222333 33467999999998766665521 1235566778999999
Q ss_pred ecCCCcCChh
Q 024413 238 FNKTDVAQHE 247 (268)
Q Consensus 238 ~NK~Dl~~~~ 247 (268)
+||+|..++.
T Consensus 199 iTK~D~~~~~ 208 (240)
T smart00053 199 ITKLDLMDEG 208 (240)
T ss_pred EECCCCCCcc
Confidence 9999998753
No 439
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.37 E-value=3.4e-12 Score=120.57 Aligned_cols=74 Identities=27% Similarity=0.285 Sum_probs=49.2
Q ss_pred CCCEEEEeCCCCcchhhhhhHHHHHHHHH--hccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeecCCC
Q 024413 165 HLDYVLVDTPGQIEIFTWSASGAIITEAF--ASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTD 242 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~~~~~~i~~~~--~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK~D 242 (268)
+..+.|+||||+.+. .. .....+.... ....+|++++|+|+....+..+... ..++...++|+++|+||+|
T Consensus 48 ~~~~~liDT~G~~~~-~~-~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~-----~~~l~~~~~piilv~NK~D 120 (435)
T PRK00093 48 GREFILIDTGGIEPD-DD-GFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEI-----AKILRKSNKPVILVVNKVD 120 (435)
T ss_pred CcEEEEEECCCCCCc-ch-hHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHH-----HHHHHHcCCcEEEEEECcc
Confidence 457999999999762 11 1112222221 1245899999999987666554321 3455566899999999999
Q ss_pred cCC
Q 024413 243 VAQ 245 (268)
Q Consensus 243 l~~ 245 (268)
+.+
T Consensus 121 ~~~ 123 (435)
T PRK00093 121 GPD 123 (435)
T ss_pred Ccc
Confidence 765
No 440
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.37 E-value=1.2e-12 Score=124.31 Aligned_cols=125 Identities=19% Similarity=0.254 Sum_probs=74.0
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccch
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 145 (268)
.+.+..++|+|++|+|||||+|.|++.... .....++.+ ++... ..+ .
T Consensus 212 ~~~~~kV~ivG~~nvGKSSLln~L~~~~~a------------~v~~~~gtT----~d~~~-----~~i--------~--- 259 (449)
T PRK05291 212 LREGLKVVIAGRPNVGKSSLLNALLGEERA------------IVTDIAGTT----RDVIE-----EHI--------N--- 259 (449)
T ss_pred hhcCCEEEEECCCCCCHHHHHHHHhCCCCc------------ccCCCCCcc----cccEE-----EEE--------E---
Confidence 567788999999999999999999985432 111112211 00000 000 0
Q ss_pred hhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHH-hccCCcEEEEEEcCCCcCCchhhHHHHHHHH
Q 024413 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAF-ASTFPTVVTYVVDTPRSANPMTFMSNMLYAC 224 (268)
Q Consensus 146 ~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~-~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~ 224 (268)
..+.++.|+||||+.++.. ......+.+.+ ....+|++++|+|+.......+.. . +
T Consensus 260 -----------------~~g~~i~l~DT~G~~~~~~-~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~--~---l 316 (449)
T PRK05291 260 -----------------LDGIPLRLIDTAGIRETDD-EVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDE--I---L 316 (449)
T ss_pred -----------------ECCeEEEEEeCCCCCCCcc-HHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHH--H---H
Confidence 1245789999999976422 11111111222 124589999999997654433211 0 1
Q ss_pred HHHHhhCCCceeeecCCCcCChh
Q 024413 225 SILYKTRLPLVLAFNKTDVAQHE 247 (268)
Q Consensus 225 ~~l~~~~~p~ilV~NK~Dl~~~~ 247 (268)
.. ..++|+++|+||+|+.+..
T Consensus 317 ~~--~~~~piiiV~NK~DL~~~~ 337 (449)
T PRK05291 317 EE--LKDKPVIVVLNKADLTGEI 337 (449)
T ss_pred Hh--cCCCCcEEEEEhhhccccc
Confidence 11 3478999999999997654
No 441
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=99.37 E-value=5e-12 Score=111.17 Aligned_cols=175 Identities=19% Similarity=0.207 Sum_probs=107.1
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHH----HHHH-HHHHcCCCCCCC
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTI----RYKE-VMKQFNLGPNGG 140 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~----~~~~-~l~~~~l~~~~~ 140 (268)
..+-.+..|.|.-|||||||+|.|+-... +.+|.+.-.. +.+..++.... ...+ +-+++.| .|+|
T Consensus 54 ~~rIPvtIITGyLGaGKtTLLn~Il~~~h--gKRIAVIlNE-------fGes~die~sl~~~~~gg~lyEewv~L-~NGC 123 (391)
T KOG2743|consen 54 GARIPVTIITGYLGAGKTTLLNYILTGQH--GKRIAVILNE-------FGESSDIEKSLAVSQEGGELYEEWVEL-RNGC 123 (391)
T ss_pred CCccceEEEEecccCChHHHHHHHHccCC--CceEEEEhhh-------cccchhhhHHHHhccccchHHHHHHHh-cCCe
Confidence 34556789999999999999999986432 3344442211 11212221110 0111 1123333 4899
Q ss_pred cccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhcc-CCcEEEEEEcCCCcCCchhhHHH
Q 024413 141 ILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAST-FPTVVTYVVDTPRSANPMTFMSN 219 (268)
Q Consensus 141 ~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~-~~d~vv~vvD~~~~~~~~~~~~~ 219 (268)
+||+++. -|-|..-.+.+ --...+++++.|.|+++|.+ .....+....+.+. .-|.||.|+|+.+.....+....
T Consensus 124 lCCtVk~--~gvraie~lvq-kkGkfD~IllETTGlAnPaP-ia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~ 199 (391)
T KOG2743|consen 124 LCCTVKD--NGVRAIENLVQ-KKGKFDHILLETTGLANPAP-IASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKP 199 (391)
T ss_pred EEEEecc--hHHHHHHHHHh-cCCCcceEEEeccCCCCcHH-HHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCc
Confidence 9998875 23333333443 34678999999999999843 34455666665443 35999999999876544332111
Q ss_pred HHHHHHHHHhhCCCceeeecCCCcCChhhhhhhhh
Q 024413 220 MLYACSILYKTRLPLVLAFNKTDVAQHEFALEVQF 254 (268)
Q Consensus 220 ~~~~~~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~ 254 (268)
.-...+...|...+.-+++||.|+++.+++....+
T Consensus 200 ~g~i~EA~~QiA~AD~II~NKtDli~~e~~~~l~q 234 (391)
T KOG2743|consen 200 DGLINEATRQIALADRIIMNKTDLVSEEEVKKLRQ 234 (391)
T ss_pred ccchHHHHHHHhhhheeeeccccccCHHHHHHHHH
Confidence 11112445567778899999999999877765544
No 442
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.37 E-value=4.9e-13 Score=109.03 Aligned_cols=72 Identities=13% Similarity=0.110 Sum_probs=39.6
Q ss_pred CCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHH-HHHHHHhhCCCceeeecCCCcC
Q 024413 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLY-ACSILYKTRLPLVLAFNKTDVA 244 (268)
Q Consensus 166 ~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~-~~~~l~~~~~p~ilV~NK~Dl~ 244 (268)
..+.|+|+||+..+.. ....++ ..+|++++++|.....+.... ..... ........+.|+++|+||+|+.
T Consensus 49 ~~l~i~Dt~G~~~~~~------~~~~~~--~~~d~~ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~ 119 (164)
T cd04175 49 CMLEILDTAGTEQFTA------MRDLYM--KNGQGFVLVYSITAQSTFNDL-QDLREQILRVKDTEDVPMILVGNKCDLE 119 (164)
T ss_pred EEEEEEECCCcccchh------HHHHHH--hhCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECCcch
Confidence 3567999999976532 222223 235778888887432211111 11110 0111122468999999999996
Q ss_pred Ch
Q 024413 245 QH 246 (268)
Q Consensus 245 ~~ 246 (268)
..
T Consensus 120 ~~ 121 (164)
T cd04175 120 DE 121 (164)
T ss_pred hc
Confidence 53
No 443
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.37 E-value=8e-13 Score=109.50 Aligned_cols=72 Identities=22% Similarity=0.213 Sum_probs=39.7
Q ss_pred CCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHH-HHHHHHHhhCCCceeeecCCCcC
Q 024413 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNML-YACSILYKTRLPLVLAFNKTDVA 244 (268)
Q Consensus 166 ~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~-~~~~~l~~~~~p~ilV~NK~Dl~ 244 (268)
..+.|+|+||+.++.. +...+ ...++.+++++|......... ..... .........+.|+++|+||+|+.
T Consensus 49 ~~~~l~D~~g~~~~~~-------~~~~~-~~~~~~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 119 (180)
T cd04137 49 YHLEIVDTAGQDEYSI-------LPQKY-SIGIHGYILVYSVTSRKSFEV-VKVIYDKILDMLGKESVPIVLVGNKSDLH 119 (180)
T ss_pred EEEEEEECCChHhhHH-------HHHHH-HhhCCEEEEEEECCCHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEEchhhh
Confidence 4678999999866421 11111 123677888888754322111 11111 00111123467999999999997
Q ss_pred Ch
Q 024413 245 QH 246 (268)
Q Consensus 245 ~~ 246 (268)
..
T Consensus 120 ~~ 121 (180)
T cd04137 120 TQ 121 (180)
T ss_pred hc
Confidence 53
No 444
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.37 E-value=1.1e-12 Score=110.34 Aligned_cols=71 Identities=15% Similarity=0.148 Sum_probs=41.3
Q ss_pred CEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeecCCCcCCh
Q 024413 167 DYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQH 246 (268)
Q Consensus 167 ~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK~Dl~~~ 246 (268)
.+.|||+||+..+.. .....+ ..+|++++|+|.....+... ................|+++|+||+|+...
T Consensus 51 ~~~i~Dt~G~~~~~~------~~~~~~--~~ad~~i~v~D~~~~~s~~~-~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~ 121 (191)
T cd04112 51 KLQIWDTAGQERFRS------VTHAYY--RDAHALLLLYDITNKASFDN-IRAWLTEIKEYAQEDVVIMLLGNKADMSGE 121 (191)
T ss_pred EEEEEeCCCcHHHHH------hhHHHc--cCCCEEEEEEECCCHHHHHH-HHHHHHHHHHhCCCCCcEEEEEEcccchhc
Confidence 688999999855421 111222 34799999999965322111 111111111112336899999999999643
No 445
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.37 E-value=5.5e-12 Score=115.31 Aligned_cols=78 Identities=22% Similarity=0.230 Sum_probs=46.2
Q ss_pred CCCEEEEeCCCCcchhhhh-hHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHh-----hCCCceeee
Q 024413 165 HLDYVLVDTPGQIEIFTWS-ASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK-----TRLPLVLAF 238 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~-~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~-----~~~p~ilV~ 238 (268)
..++.|+|+||+.+..... .......+++ +.++++++|+|+.......+ .... ...+.. .++|.++|+
T Consensus 205 ~~~~~i~D~PGli~ga~~~~gLg~~flrhi--e~a~vlI~ViD~s~~~s~e~-~~~~---~~EL~~~~~~L~~kp~IIV~ 278 (335)
T PRK12299 205 YKSFVIADIPGLIEGASEGAGLGHRFLKHI--ERTRLLLHLVDIEAVDPVED-YKTI---RNELEKYSPELADKPRILVL 278 (335)
T ss_pred CcEEEEEeCCCccCCCCccccHHHHHHHHh--hhcCEEEEEEcCCCCCCHHH-HHHH---HHHHHHhhhhcccCCeEEEE
Confidence 3579999999997642221 1222333333 34799999999864321111 1111 122211 368999999
Q ss_pred cCCCcCChhh
Q 024413 239 NKTDVAQHEF 248 (268)
Q Consensus 239 NK~Dl~~~~~ 248 (268)
||+|+....+
T Consensus 279 NKiDL~~~~~ 288 (335)
T PRK12299 279 NKIDLLDEEE 288 (335)
T ss_pred ECcccCCchh
Confidence 9999976543
No 446
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.37 E-value=6.4e-13 Score=107.27 Aligned_cols=23 Identities=30% Similarity=0.592 Sum_probs=20.7
Q ss_pred EEEEEecCCCCHHHHHHHHHhcc
Q 024413 71 IIIVVGMAGSGKTTFMHRLVCHT 93 (268)
Q Consensus 71 ~v~iiG~~GsGKSTLl~~l~g~~ 93 (268)
.++++|++|+|||||++.+.+..
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~~ 25 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQNH 25 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 57999999999999999999754
No 447
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.37 E-value=1e-12 Score=106.41 Aligned_cols=69 Identities=22% Similarity=0.208 Sum_probs=39.5
Q ss_pred CCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHH---hhCCCceeeecCCC
Q 024413 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY---KTRLPLVLAFNKTD 242 (268)
Q Consensus 166 ~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~---~~~~p~ilV~NK~D 242 (268)
..+.|+|+||+.++.. .....+ ..++.+++++|....... ....... ..... ..++|+++|+||+|
T Consensus 48 ~~~~i~D~~g~~~~~~------~~~~~~--~~~~~~i~v~d~~~~~s~-~~~~~~~--~~~~~~~~~~~~piiiv~NK~D 116 (164)
T cd04139 48 VQLNILDTAGQEDYAA------IRDNYH--RSGEGFLLVFSITDMESF-TATAEFR--EQILRVKDDDNVPLLLVGNKCD 116 (164)
T ss_pred EEEEEEECCChhhhhH------HHHHHh--hcCCEEEEEEECCCHHHH-HHHHHHH--HHHHHhcCCCCCCEEEEEEccc
Confidence 3589999999866421 222222 335778888887432111 0011111 11222 25799999999999
Q ss_pred cCC
Q 024413 243 VAQ 245 (268)
Q Consensus 243 l~~ 245 (268)
+..
T Consensus 117 ~~~ 119 (164)
T cd04139 117 LED 119 (164)
T ss_pred ccc
Confidence 976
No 448
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.37 E-value=6.1e-12 Score=102.70 Aligned_cols=82 Identities=16% Similarity=0.202 Sum_probs=45.4
Q ss_pred CCCEEEEeCCCCcchhhhhh--HHHHHHHHHhccCCcEEEEEEcCCCcCCc-hhhHHHHHHHHHHHHhh--CCCceeeec
Q 024413 165 HLDYVLVDTPGQIEIFTWSA--SGAIITEAFASTFPTVVTYVVDTPRSANP-MTFMSNMLYACSILYKT--RLPLVLAFN 239 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~~--~~~~i~~~~~~~~~d~vv~vvD~~~~~~~-~~~~~~~~~~~~~l~~~--~~p~ilV~N 239 (268)
+.++.|+||||+.+...... ......... ....|++++|+|+...... .+.... ....+... +.|+++|+|
T Consensus 46 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~-~~~~d~~l~v~d~~~~~~~~~~~~~~---~~~~l~~~~~~~pvilv~N 121 (168)
T cd01897 46 YLRWQVIDTPGLLDRPLEERNTIEMQAITAL-AHLRAAVLFLFDPSETCGYSLEEQLS---LFEEIKPLFKNKPVIVVLN 121 (168)
T ss_pred ceEEEEEECCCcCCccccCCchHHHHHHHHH-HhccCcEEEEEeCCcccccchHHHHH---HHHHHHhhcCcCCeEEEEE
Confidence 35799999999854211110 001111111 1235899999999654221 111111 12333333 789999999
Q ss_pred CCCcCChhhhh
Q 024413 240 KTDVAQHEFAL 250 (268)
Q Consensus 240 K~Dl~~~~~~~ 250 (268)
|+|+.+.+...
T Consensus 122 K~Dl~~~~~~~ 132 (168)
T cd01897 122 KIDLLTFEDLS 132 (168)
T ss_pred ccccCchhhHH
Confidence 99998765443
No 449
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.37 E-value=9.9e-13 Score=110.43 Aligned_cols=69 Identities=23% Similarity=0.387 Sum_probs=49.9
Q ss_pred CCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeecCCCcC
Q 024413 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA 244 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK~Dl~ 244 (268)
+..+.|+|+||..++.. .+... ...+|++++|||+..+...... ..+..+...++|.++|+||+|+.
T Consensus 69 ~~~i~~iDtPG~~~f~~------~~~~~--~~~~D~ailvVda~~g~~~~~~-----~~l~~~~~~~~p~ivvlNK~D~~ 135 (188)
T PF00009_consen 69 NRKITLIDTPGHEDFIK------EMIRG--LRQADIAILVVDANDGIQPQTE-----EHLKILRELGIPIIVVLNKMDLI 135 (188)
T ss_dssp SEEEEEEEESSSHHHHH------HHHHH--HTTSSEEEEEEETTTBSTHHHH-----HHHHHHHHTT-SEEEEEETCTSS
T ss_pred ccceeecccccccceee------cccce--ecccccceeeeecccccccccc-----cccccccccccceEEeeeeccch
Confidence 56799999999866522 23222 2467999999999887666542 22456678899999999999998
Q ss_pred Ch
Q 024413 245 QH 246 (268)
Q Consensus 245 ~~ 246 (268)
..
T Consensus 136 ~~ 137 (188)
T PF00009_consen 136 EK 137 (188)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 450
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.36 E-value=2.9e-12 Score=102.07 Aligned_cols=65 Identities=15% Similarity=0.122 Sum_probs=38.1
Q ss_pred EEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeecCCCcCC
Q 024413 169 VLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQ 245 (268)
Q Consensus 169 lllDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK~Dl~~ 245 (268)
.++|+||+... .......+... ...+|++++|+|+......... .++.....|.++|+||+|+.+
T Consensus 38 ~~iDt~G~~~~--~~~~~~~~~~~--~~~ad~vilv~d~~~~~s~~~~--------~~~~~~~~p~ilv~NK~Dl~~ 102 (142)
T TIGR02528 38 GAIDTPGEYVE--NRRLYSALIVT--AADADVIALVQSATDPESRFPP--------GFASIFVKPVIGLVTKIDLAE 102 (142)
T ss_pred eeecCchhhhh--hHHHHHHHHHH--hhcCCEEEEEecCCCCCcCCCh--------hHHHhccCCeEEEEEeeccCC
Confidence 57899998311 11111122222 2457999999998655443221 111122459999999999975
No 451
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.36 E-value=3.6e-12 Score=121.75 Aligned_cols=125 Identities=21% Similarity=0.266 Sum_probs=74.3
Q ss_pred CCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccchhh
Q 024413 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (268)
Q Consensus 68 ~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 147 (268)
....++|+|++|+|||||+|.|++.... .....+.++ ++... ....
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~------------~~s~~~gtT----~d~~~--------------~~~~---- 255 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERS------------VVDDVAGTT----VDPVD--------------SLIE---- 255 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcc------------cccCCCCcc----CCcce--------------EEEE----
Confidence 3478999999999999999999986432 111111111 00000 0000
Q ss_pred hcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhh--hH-HHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHH
Q 024413 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWS--AS-GAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC 224 (268)
Q Consensus 148 lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~--~~-~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~ 224 (268)
..+.++.|+||||+....... .. ...+.....-..+|++++|+|+.......+.. .+
T Consensus 256 ---------------~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~-----~~ 315 (472)
T PRK03003 256 ---------------LGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQR-----VL 315 (472)
T ss_pred ---------------ECCEEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHH-----HH
Confidence 124468899999985432111 01 11111111124589999999998776555421 12
Q ss_pred HHHHhhCCCceeeecCCCcCCh
Q 024413 225 SILYKTRLPLVLAFNKTDVAQH 246 (268)
Q Consensus 225 ~~l~~~~~p~ilV~NK~Dl~~~ 246 (268)
..+...++|+|+|+||+|+..+
T Consensus 316 ~~~~~~~~piIiV~NK~Dl~~~ 337 (472)
T PRK03003 316 SMVIEAGRALVLAFNKWDLVDE 337 (472)
T ss_pred HHHHHcCCCEEEEEECcccCCh
Confidence 3444568999999999999864
No 452
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.36 E-value=3.1e-12 Score=120.86 Aligned_cols=127 Identities=19% Similarity=0.257 Sum_probs=76.7
Q ss_pred CCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccchhh
Q 024413 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (268)
Q Consensus 68 ~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 147 (268)
....++|+|.+|+|||||+|.|+|..... ....+..+.-.+.. ...
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~------------~~~~~gtt~~~~~~-----------------~~~----- 217 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVI------------VSDIAGTTRDSIDT-----------------PFE----- 217 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcee------------ecCCCCceEEEEEE-----------------EEE-----
Confidence 46789999999999999999999864321 11111111000000 000
Q ss_pred hcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhh--hHHHHHHHHH-hccCCcEEEEEEcCCCcCCchhhHHHHHHHH
Q 024413 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWS--ASGAIITEAF-ASTFPTVVTYVVDTPRSANPMTFMSNMLYAC 224 (268)
Q Consensus 148 lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~--~~~~~i~~~~-~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~ 224 (268)
..+.++.|+||||+....... .......+.+ ....+|++++|+|+..+....+.. .+
T Consensus 218 ---------------~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~-----i~ 277 (435)
T PRK00093 218 ---------------RDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLR-----IA 277 (435)
T ss_pred ---------------ECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHH-----HH
Confidence 124579999999986542211 1111111122 124579999999998876665532 13
Q ss_pred HHHHhhCCCceeeecCCCcCChhh
Q 024413 225 SILYKTRLPLVLAFNKTDVAQHEF 248 (268)
Q Consensus 225 ~~l~~~~~p~ilV~NK~Dl~~~~~ 248 (268)
..+...++|+++|+||+|+.+++.
T Consensus 278 ~~~~~~~~~~ivv~NK~Dl~~~~~ 301 (435)
T PRK00093 278 GLALEAGRALVIVVNKWDLVDEKT 301 (435)
T ss_pred HHHHHcCCcEEEEEECccCCCHHH
Confidence 444456799999999999986543
No 453
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.36 E-value=8.3e-13 Score=109.32 Aligned_cols=70 Identities=17% Similarity=0.189 Sum_probs=40.4
Q ss_pred CEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCc--hhhHHHHHHHHHHH-HhhCCCceeeecCCCc
Q 024413 167 DYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANP--MTFMSNMLYACSIL-YKTRLPLVLAFNKTDV 243 (268)
Q Consensus 167 ~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~--~~~~~~~~~~~~~l-~~~~~p~ilV~NK~Dl 243 (268)
.+.|||+||+.++.. ....+++ .++++++++|.....+. ...+... .... ...+.|+++|+||+|+
T Consensus 51 ~l~i~Dt~G~~~~~~------l~~~~~~--~~d~~ilv~d~~~~~Sf~~~~~~~~~---i~~~~~~~~~piilvgNK~Dl 119 (172)
T cd04141 51 LLDILDTAGQAEFTA------MRDQYMR--CGEGFIICYSVTDRHSFQEASEFKKL---ITRVRLTEDIPLVLVGNKVDL 119 (172)
T ss_pred EEEEEeCCCchhhHH------HhHHHhh--cCCEEEEEEECCchhHHHHHHHHHHH---HHHhcCCCCCCEEEEEEChhh
Confidence 578999999966522 2223333 36777888777543222 1111111 1111 1246899999999998
Q ss_pred CChh
Q 024413 244 AQHE 247 (268)
Q Consensus 244 ~~~~ 247 (268)
.+.+
T Consensus 120 ~~~~ 123 (172)
T cd04141 120 ESQR 123 (172)
T ss_pred hhcC
Confidence 6543
No 454
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.36 E-value=6.5e-12 Score=103.13 Aligned_cols=72 Identities=19% Similarity=0.184 Sum_probs=43.8
Q ss_pred CCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHH-hhCCCceeeecCCCc
Q 024413 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY-KTRLPLVLAFNKTDV 243 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~-~~~~p~ilV~NK~Dl 243 (268)
+.++.|||+||+.++.. ....++ ..+|++++|+|+........ .. ......+. ..++|+++|+||+|+
T Consensus 43 ~~~l~i~Dt~G~~~~~~------~~~~~~--~~ad~ii~V~D~t~~~s~~~-~~--~~l~~~~~~~~~~piilv~NK~Dl 111 (164)
T cd04162 43 DAIMELLEIGGSQNLRK------YWKRYL--SGSQGLIFVVDSADSERLPL-AR--QELHQLLQHPPDLPLVVLANKQDL 111 (164)
T ss_pred CeEEEEEECCCCcchhH------HHHHHH--hhCCEEEEEEECCCHHHHHH-HH--HHHHHHHhCCCCCcEEEEEeCcCC
Confidence 44689999999976521 112223 34799999999865321111 11 11112222 257899999999998
Q ss_pred CChh
Q 024413 244 AQHE 247 (268)
Q Consensus 244 ~~~~ 247 (268)
....
T Consensus 112 ~~~~ 115 (164)
T cd04162 112 PAAR 115 (164)
T ss_pred cCCC
Confidence 7654
No 455
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.36 E-value=6.6e-12 Score=101.68 Aligned_cols=68 Identities=22% Similarity=0.138 Sum_probs=40.6
Q ss_pred CEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHH-Hhh--CCCceeeecCCCc
Q 024413 167 DYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL-YKT--RLPLVLAFNKTDV 243 (268)
Q Consensus 167 ~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l-~~~--~~p~ilV~NK~Dl 243 (268)
.+.|||+||+..+.. .....+ ..++++++|+|.....+... .......+ ... +.|+++|+||+|+
T Consensus 50 ~l~~~D~~G~~~~~~------~~~~~~--~~~~~ii~v~d~~~~~s~~~----~~~~~~~~~~~~~~~~~iilv~nK~D~ 117 (161)
T cd01861 50 RLQLWDTAGQERFRS------LIPSYI--RDSSVAVVVYDITNRQSFDN----TDKWIDDVRDERGNDVIIVLVGNKTDL 117 (161)
T ss_pred EEEEEECCCcHHHHH------HHHHHh--ccCCEEEEEEECcCHHHHHH----HHHHHHHHHHhCCCCCEEEEEEEChhc
Confidence 589999999865421 222223 34799999999854322111 11111222 222 4899999999999
Q ss_pred CCh
Q 024413 244 AQH 246 (268)
Q Consensus 244 ~~~ 246 (268)
...
T Consensus 118 ~~~ 120 (161)
T cd01861 118 SDK 120 (161)
T ss_pred ccc
Confidence 543
No 456
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=1e-12 Score=109.06 Aligned_cols=140 Identities=19% Similarity=0.214 Sum_probs=87.5
Q ss_pred cCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccchh
Q 024413 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (268)
Q Consensus 67 ~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 146 (268)
..-.+++|+|.+|+|||.|+..+.+-..+.+...++ |.|.....+.+ .
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTI-GVDf~~rt~e~------~------------------------- 54 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTI-GVDFKIRTVEL------D------------------------- 54 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchhhccee-eeEEEEEEeee------c-------------------------
Confidence 345678999999999999999998876664432222 11111000000 0
Q ss_pred hhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHH
Q 024413 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (268)
Q Consensus 147 ~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~ 226 (268)
...-++.||||+||..+.+ ....+++...+.++||.+....+|+....|.... +.
T Consensus 55 ----------------gk~iKlQIWDTAGQERFrt------it~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei---~~ 109 (205)
T KOG0084|consen 55 ----------------GKTIKLQIWDTAGQERFRT------ITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEI---DR 109 (205)
T ss_pred ----------------ceEEEEEeeeccccHHHhh------hhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHh---hh
Confidence 1134789999999977743 6677776655555555555556666655332221 22
Q ss_pred HHhhCCCceeeecCCCcCChhhhhhhhhhcccceeee
Q 024413 227 LYKTRLPLVLAFNKTDVAQHEFALEVQFFSMLDYYFC 263 (268)
Q Consensus 227 l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~ 263 (268)
....++|.++|+||||+.+........++++++.+..
T Consensus 110 ~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~ 146 (205)
T KOG0084|consen 110 YASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGI 146 (205)
T ss_pred hccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCC
Confidence 2244679999999999988776666666555554443
No 457
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.35 E-value=7e-12 Score=104.81 Aligned_cols=70 Identities=17% Similarity=0.245 Sum_probs=40.9
Q ss_pred CCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHH---hhCCCceeeecCC
Q 024413 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY---KTRLPLVLAFNKT 241 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~---~~~~p~ilV~NK~ 241 (268)
+.++.++|+||+..+.. ....++ ..++.+++|+|+... ..+..........+. ..+.|+++|+||+
T Consensus 62 ~~~~~l~D~~G~~~~~~------~~~~~~--~~ad~iilV~D~~~~---~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~ 130 (190)
T cd00879 62 NIKFKTFDLGGHEQARR------LWKDYF--PEVDGIVFLVDAADP---ERFQESKEELDSLLSDEELANVPFLILGNKI 130 (190)
T ss_pred CEEEEEEECCCCHHHHH------HHHHHh--ccCCEEEEEEECCcH---HHHHHHHHHHHHHHcCccccCCCEEEEEeCC
Confidence 34688999999855311 112222 346999999998642 111111111112221 2458999999999
Q ss_pred CcCC
Q 024413 242 DVAQ 245 (268)
Q Consensus 242 Dl~~ 245 (268)
|+..
T Consensus 131 Dl~~ 134 (190)
T cd00879 131 DLPG 134 (190)
T ss_pred CCCC
Confidence 9864
No 458
>PRK11058 GTPase HflX; Provisional
Probab=99.35 E-value=4.4e-12 Score=119.42 Aligned_cols=78 Identities=21% Similarity=0.245 Sum_probs=44.8
Q ss_pred CEEEEeCCCCcchhhhhhHHHHHHHHHh-ccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeecCCCcCC
Q 024413 167 DYVLVDTPGQIEIFTWSASGAIITEAFA-STFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQ 245 (268)
Q Consensus 167 ~illlDePG~~~~~~~~~~~~~i~~~~~-~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK~Dl~~ 245 (268)
+++|+||||+....+...... +...+. ...+|++++|+|++........ ......+..+...++|+++|+||+|+.+
T Consensus 246 ~~~l~DTaG~~r~lp~~lve~-f~~tl~~~~~ADlIL~VvDaS~~~~~e~l-~~v~~iL~el~~~~~pvIiV~NKiDL~~ 323 (426)
T PRK11058 246 ETVLADTVGFIRHLPHDLVAA-FKATLQETRQATLLLHVVDAADVRVQENI-EAVNTVLEEIDAHEIPTLLVMNKIDMLD 323 (426)
T ss_pred eEEEEecCcccccCCHHHHHH-HHHHHHHhhcCCEEEEEEeCCCccHHHHH-HHHHHHHHHhccCCCCEEEEEEcccCCC
Confidence 689999999844212222211 222222 2458999999999654222211 1011112333334689999999999975
Q ss_pred h
Q 024413 246 H 246 (268)
Q Consensus 246 ~ 246 (268)
.
T Consensus 324 ~ 324 (426)
T PRK11058 324 D 324 (426)
T ss_pred c
Confidence 3
No 459
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.35 E-value=7.5e-12 Score=114.19 Aligned_cols=82 Identities=18% Similarity=0.210 Sum_probs=46.9
Q ss_pred CCEEEEeCCCCcchhhhh-hHHHHHHHHHhccCCcEEEEEEcCCCcC--CchhhHHHHHHHHHHHH--hhCCCceeeecC
Q 024413 166 LDYVLVDTPGQIEIFTWS-ASGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNMLYACSILY--KTRLPLVLAFNK 240 (268)
Q Consensus 166 ~~illlDePG~~~~~~~~-~~~~~i~~~~~~~~~d~vv~vvD~~~~~--~~~~~~~~~~~~~~~l~--~~~~p~ilV~NK 240 (268)
.++.|+|+||+.+..... .......+.+ ..++++++|+|+...- ++.+........+.... ...+|.++|+||
T Consensus 205 ~~~~i~D~PGli~~a~~~~gLg~~flrhi--erad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK 282 (329)
T TIGR02729 205 RSFVIADIPGLIEGASEGAGLGHRFLKHI--ERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNK 282 (329)
T ss_pred eEEEEEeCCCcccCCcccccHHHHHHHHH--HhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeC
Confidence 579999999997643221 1222233332 3479999999986531 22221111111111111 136899999999
Q ss_pred CCcCChhhh
Q 024413 241 TDVAQHEFA 249 (268)
Q Consensus 241 ~Dl~~~~~~ 249 (268)
+|+..++..
T Consensus 283 ~DL~~~~~~ 291 (329)
T TIGR02729 283 IDLLDEEEL 291 (329)
T ss_pred ccCCChHHH
Confidence 999876543
No 460
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.35 E-value=5.1e-12 Score=120.74 Aligned_cols=75 Identities=25% Similarity=0.253 Sum_probs=48.1
Q ss_pred CCCEEEEeCCCCcchhhhhhHHHHHHHHH--hccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeecCCC
Q 024413 165 HLDYVLVDTPGQIEIFTWSASGAIITEAF--ASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTD 242 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~~~~~~i~~~~--~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK~D 242 (268)
+.++.|+||||+..... .....+.... ....+|++++|+|+....+..+.. ....+...++|+++|+||+|
T Consensus 85 ~~~~~l~DT~G~~~~~~--~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~-----i~~~l~~~~~piilV~NK~D 157 (472)
T PRK03003 85 GRRFTVVDTGGWEPDAK--GLQASVAEQAEVAMRTADAVLFVVDATVGATATDEA-----VARVLRRSGKPVILAANKVD 157 (472)
T ss_pred CcEEEEEeCCCcCCcch--hHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHH-----HHHHHHHcCCCEEEEEECcc
Confidence 44689999999864211 1111222211 124589999999998765544321 13455567899999999999
Q ss_pred cCCh
Q 024413 243 VAQH 246 (268)
Q Consensus 243 l~~~ 246 (268)
+...
T Consensus 158 l~~~ 161 (472)
T PRK03003 158 DERG 161 (472)
T ss_pred CCcc
Confidence 8653
No 461
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.35 E-value=5.4e-12 Score=100.22 Aligned_cols=80 Identities=24% Similarity=0.246 Sum_probs=52.2
Q ss_pred CCCEEEEeCCCCcchhhhhhHH-HHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeecCCCc
Q 024413 165 HLDYVLVDTPGQIEIFTWSASG-AIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDV 243 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~~~~-~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK~Dl 243 (268)
..++.|+|+||+.++....... ......+ ..+|.+++++|+.......... ..........|.++|+||+|+
T Consensus 44 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~--~~~d~il~v~~~~~~~~~~~~~-----~~~~~~~~~~~~ivv~nK~D~ 116 (163)
T cd00880 44 LGPVVLIDTPGIDEAGGLGREREELARRVL--ERADLILFVVDADLRADEEEEK-----LLELLRERGKPVLLVLNKIDL 116 (163)
T ss_pred CCcEEEEECCCCCccccchhhHHHHHHHHH--HhCCEEEEEEeCCCCCCHHHHH-----HHHHHHhcCCeEEEEEEcccc
Confidence 5689999999998763322111 1222222 3479999999997755444322 123444678999999999999
Q ss_pred CChhhhhh
Q 024413 244 AQHEFALE 251 (268)
Q Consensus 244 ~~~~~~~~ 251 (268)
........
T Consensus 117 ~~~~~~~~ 124 (163)
T cd00880 117 LPEEEEEE 124 (163)
T ss_pred CChhhHHH
Confidence 88765443
No 462
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.35 E-value=1.4e-12 Score=106.14 Aligned_cols=68 Identities=16% Similarity=0.156 Sum_probs=40.3
Q ss_pred CEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHH----hhCCCceeeecCCC
Q 024413 167 DYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY----KTRLPLVLAFNKTD 242 (268)
Q Consensus 167 ~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~----~~~~p~ilV~NK~D 242 (268)
.+.|||+||+..+.. ....++ ..+|++++++|.... ..+.. .......+. ..++|+++|+||+|
T Consensus 50 ~l~i~Dt~G~~~~~~------~~~~~~--~~ad~~i~v~d~~~~---~s~~~-~~~~~~~~~~~~~~~~~piviv~nK~D 117 (163)
T cd04176 50 VLEILDTAGTEQFAS------MRDLYI--KNGQGFIVVYSLVNQ---QTFQD-IKPMRDQIVRVKGYEKVPIILVGNKVD 117 (163)
T ss_pred EEEEEECCCcccccc------hHHHHH--hhCCEEEEEEECCCH---HHHHH-HHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 467999999876532 222233 247888888888542 21111 111111221 24789999999999
Q ss_pred cCCh
Q 024413 243 VAQH 246 (268)
Q Consensus 243 l~~~ 246 (268)
+...
T Consensus 118 l~~~ 121 (163)
T cd04176 118 LESE 121 (163)
T ss_pred chhc
Confidence 8653
No 463
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.35 E-value=4e-12 Score=107.79 Aligned_cols=70 Identities=21% Similarity=0.295 Sum_probs=47.6
Q ss_pred CCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCC-ceeeecCCCc
Q 024413 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLP-LVLAFNKTDV 243 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p-~ilV~NK~Dl 243 (268)
+..+.|+||||..++.. .....+ ..+|++++|+|+..+....+.. .+..+...++| +|+|+||+|+
T Consensus 64 ~~~i~~iDtPG~~~~~~------~~~~~~--~~~D~~ilVvda~~g~~~~~~~-----~~~~~~~~~~~~iIvviNK~D~ 130 (195)
T cd01884 64 NRHYAHVDCPGHADYIK------NMITGA--AQMDGAILVVSATDGPMPQTRE-----HLLLARQVGVPYIVVFLNKADM 130 (195)
T ss_pred CeEEEEEECcCHHHHHH------HHHHHh--hhCCEEEEEEECCCCCcHHHHH-----HHHHHHHcCCCcEEEEEeCCCC
Confidence 45789999999865421 222222 4589999999998876655422 13455566787 6789999999
Q ss_pred CChh
Q 024413 244 AQHE 247 (268)
Q Consensus 244 ~~~~ 247 (268)
+...
T Consensus 131 ~~~~ 134 (195)
T cd01884 131 VDDE 134 (195)
T ss_pred CCcH
Confidence 7543
No 464
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.35 E-value=2.3e-12 Score=105.38 Aligned_cols=70 Identities=19% Similarity=0.130 Sum_probs=42.1
Q ss_pred CCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHh---hCCCceeeecCCC
Q 024413 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK---TRLPLVLAFNKTD 242 (268)
Q Consensus 166 ~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~---~~~p~ilV~NK~D 242 (268)
..+.|||+||+.++.. ..... ...++++++++|.... ..+. .+......+.. ...|+++|+||+|
T Consensus 50 ~~~~l~Dt~g~~~~~~------~~~~~--~~~~~~~l~v~d~~~~---~s~~-~~~~~~~~i~~~~~~~~piivv~nK~D 117 (165)
T cd01865 50 VKLQIWDTAGQERYRT------ITTAY--YRGAMGFILMYDITNE---ESFN-AVQDWSTQIKTYSWDNAQVILVGNKCD 117 (165)
T ss_pred EEEEEEECCChHHHHH------HHHHH--ccCCcEEEEEEECCCH---HHHH-HHHHHHHHHHHhCCCCCCEEEEEECcc
Confidence 3689999999865421 11122 2457999999998532 2211 11111222322 3578999999999
Q ss_pred cCChh
Q 024413 243 VAQHE 247 (268)
Q Consensus 243 l~~~~ 247 (268)
+.+.+
T Consensus 118 l~~~~ 122 (165)
T cd01865 118 MEDER 122 (165)
T ss_pred cCccc
Confidence 97643
No 465
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.34 E-value=2.6e-12 Score=104.17 Aligned_cols=70 Identities=21% Similarity=0.215 Sum_probs=41.3
Q ss_pred CCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHH--hhCCCceeeecCCCc
Q 024413 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY--KTRLPLVLAFNKTDV 243 (268)
Q Consensus 166 ~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~--~~~~p~ilV~NK~Dl 243 (268)
.++.|+|+||+.++.. ....++ ..++++++|+|.... ..+.. .......+. ..++|+++|+||+|+
T Consensus 51 ~~~~i~D~~G~~~~~~------~~~~~~--~~~~~~v~v~d~~~~---~s~~~-l~~~~~~~~~~~~~~p~iiv~nK~Dl 118 (162)
T cd04106 51 VRLMLWDTAGQEEFDA------ITKAYY--RGAQACILVFSTTDR---ESFEA-IESWKEKVEAECGDIPMVLVQTKIDL 118 (162)
T ss_pred EEEEEeeCCchHHHHH------hHHHHh--cCCCEEEEEEECCCH---HHHHH-HHHHHHHHHHhCCCCCEEEEEEChhc
Confidence 3689999999865422 222233 346888888887432 22111 111111121 247899999999999
Q ss_pred CChh
Q 024413 244 AQHE 247 (268)
Q Consensus 244 ~~~~ 247 (268)
....
T Consensus 119 ~~~~ 122 (162)
T cd04106 119 LDQA 122 (162)
T ss_pred cccc
Confidence 7643
No 466
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.34 E-value=6e-12 Score=103.14 Aligned_cols=68 Identities=21% Similarity=0.172 Sum_probs=41.4
Q ss_pred CEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHH---hhCCCceeeecCCCc
Q 024413 167 DYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY---KTRLPLVLAFNKTDV 243 (268)
Q Consensus 167 ~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~---~~~~p~ilV~NK~Dl 243 (268)
.+.|+|+||+..+.. .....+ ..+|++++++|.... ..+.. +......+. ..+.|+++|+||+|+
T Consensus 53 ~l~l~D~~g~~~~~~------~~~~~~--~~ad~~i~v~d~~~~---~s~~~-~~~~~~~i~~~~~~~~p~iiv~nK~Dl 120 (167)
T cd01867 53 KLQIWDTAGQERFRT------ITTAYY--RGAMGIILVYDITDE---KSFEN-IRNWMRNIEEHASEDVERMLVGNKCDM 120 (167)
T ss_pred EEEEEeCCchHHHHH------HHHHHh--CCCCEEEEEEECcCH---HHHHh-HHHHHHHHHHhCCCCCcEEEEEECccc
Confidence 689999999865422 122222 357999999998542 22211 111112222 246799999999999
Q ss_pred CCh
Q 024413 244 AQH 246 (268)
Q Consensus 244 ~~~ 246 (268)
.+.
T Consensus 121 ~~~ 123 (167)
T cd01867 121 EEK 123 (167)
T ss_pred ccc
Confidence 754
No 467
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.34 E-value=5.3e-12 Score=118.95 Aligned_cols=75 Identities=20% Similarity=0.241 Sum_probs=48.6
Q ss_pred CCCEEEEeCCCCcchhhhh--hHHHHHHHHH-hccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeecCC
Q 024413 165 HLDYVLVDTPGQIEIFTWS--ASGAIITEAF-ASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKT 241 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~--~~~~~i~~~~-~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK~ 241 (268)
+.++.|+||||+.+..... .......+.. ....+|++++|+|+..+.+..+.. .+..+...++|+++|+||+
T Consensus 219 ~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~-----~~~~~~~~~~~iiiv~NK~ 293 (429)
T TIGR03594 219 GKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLR-----IAGLILEAGKALVIVVNKW 293 (429)
T ss_pred CcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHH-----HHHHHHHcCCcEEEEEECc
Confidence 3468999999997653211 1111111111 124589999999998776655432 1344455689999999999
Q ss_pred CcC
Q 024413 242 DVA 244 (268)
Q Consensus 242 Dl~ 244 (268)
|++
T Consensus 294 Dl~ 296 (429)
T TIGR03594 294 DLV 296 (429)
T ss_pred ccC
Confidence 998
No 468
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.34 E-value=2.3e-12 Score=105.98 Aligned_cols=68 Identities=16% Similarity=0.099 Sum_probs=41.3
Q ss_pred CEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHH--hhCCCceeeecCCCcC
Q 024413 167 DYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY--KTRLPLVLAFNKTDVA 244 (268)
Q Consensus 167 ~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~--~~~~p~ilV~NK~Dl~ 244 (268)
.+.|+|+||+.++.. +... ....+|++++++|.... .++..........+. ....|+++|+||+|+.
T Consensus 47 ~~~i~Dt~G~~~~~~-------~~~~-~~~~~d~~ilv~d~~~~---~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 115 (174)
T smart00174 47 ELGLWDTAGQEDYDR-------LRPL-SYPDTDVFLICFSVDSP---ASFENVKEKWYPEVKHFCPNTPIILVGTKLDLR 115 (174)
T ss_pred EEEEEECCCCcccch-------hchh-hcCCCCEEEEEEECCCH---HHHHHHHHHHHHHHHhhCCCCCEEEEecChhhh
Confidence 689999999976522 1111 12457999999998542 222111010112222 2478999999999996
Q ss_pred C
Q 024413 245 Q 245 (268)
Q Consensus 245 ~ 245 (268)
.
T Consensus 116 ~ 116 (174)
T smart00174 116 E 116 (174)
T ss_pred h
Confidence 5
No 469
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.34 E-value=1.5e-11 Score=104.77 Aligned_cols=70 Identities=19% Similarity=0.220 Sum_probs=42.5
Q ss_pred CCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCc-CCchhhHHHHHHHHHHHHhhCC-CceeeecCCCc
Q 024413 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS-ANPMTFMSNMLYACSILYKTRL-PLVLAFNKTDV 243 (268)
Q Consensus 166 ~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~-~~~~~~~~~~~~~~~~l~~~~~-p~ilV~NK~Dl 243 (268)
..+.|+|+||+.++. ......+ ..+|++++|+|+... ....... . +..+...+. |+++|+||+|+
T Consensus 83 ~~i~~iDtPG~~~~~------~~~~~~~--~~~D~~llVvd~~~~~~~~~t~~--~---l~~~~~~~~~~iiivvNK~Dl 149 (203)
T cd01888 83 RHVSFVDCPGHEILM------ATMLSGA--AVMDGALLLIAANEPCPQPQTSE--H---LAALEIMGLKHIIIVQNKIDL 149 (203)
T ss_pred cEEEEEECCChHHHH------HHHHHhh--hcCCEEEEEEECCCCCCCcchHH--H---HHHHHHcCCCcEEEEEEchhc
Confidence 568999999974431 1222222 347999999999763 2232211 1 122223343 68999999999
Q ss_pred CChhh
Q 024413 244 AQHEF 248 (268)
Q Consensus 244 ~~~~~ 248 (268)
.+...
T Consensus 150 ~~~~~ 154 (203)
T cd01888 150 VKEEQ 154 (203)
T ss_pred cCHHH
Confidence 87543
No 470
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.34 E-value=5e-12 Score=104.00 Aligned_cols=71 Identities=15% Similarity=0.213 Sum_probs=43.5
Q ss_pred CCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHH----hhCCCceeeecC
Q 024413 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY----KTRLPLVLAFNK 240 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~----~~~~p~ilV~NK 240 (268)
+..+.++|+||+..+.. ....++ ..++++++|+|+........ .... +..+. ..++|+++|+||
T Consensus 42 ~~~~~i~D~~G~~~~~~------~~~~~~--~~a~~ii~V~D~s~~~s~~~-~~~~---l~~l~~~~~~~~~piliv~NK 109 (167)
T cd04161 42 KYEVCIFDLGGGANFRG------IWVNYY--AEAHGLVFVVDSSDDDRVQE-VKEI---LRELLQHPRVSGKPILVLANK 109 (167)
T ss_pred CEEEEEEECCCcHHHHH------HHHHHH--cCCCEEEEEEECCchhHHHH-HHHH---HHHHHcCccccCCcEEEEEeC
Confidence 45789999999855421 222333 45799999999965321111 1111 12221 136899999999
Q ss_pred CCcCChh
Q 024413 241 TDVAQHE 247 (268)
Q Consensus 241 ~Dl~~~~ 247 (268)
+|+....
T Consensus 110 ~Dl~~~~ 116 (167)
T cd04161 110 QDKKNAL 116 (167)
T ss_pred CCCcCCC
Confidence 9997654
No 471
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.34 E-value=7e-12 Score=104.54 Aligned_cols=68 Identities=18% Similarity=0.077 Sum_probs=40.7
Q ss_pred CEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHH--hhCCCceeeecCCCcC
Q 024413 167 DYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY--KTRLPLVLAFNKTDVA 244 (268)
Q Consensus 167 ~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~--~~~~p~ilV~NK~Dl~ 244 (268)
.+.|+|+||+.++.. + .......+|++++++|.....+..... ......+. ..+.|+++|+||+|+.
T Consensus 50 ~l~i~Dt~G~~~~~~-------~-~~~~~~~ad~ii~v~d~~~~~s~~~~~---~~~~~~~~~~~~~~piilv~nK~Dl~ 118 (187)
T cd04132 50 ELALWDTAGQEEYDR-------L-RPLSYPDVDVLLICYAVDNPTSLDNVE---DKWFPEVNHFCPGTPIMLVGLKTDLR 118 (187)
T ss_pred EEEEEECCCchhHHH-------H-HHHhCCCCCEEEEEEECCCHHHHHHHH---HHHHHHHHHhCCCCCEEEEEeChhhh
Confidence 689999999866421 1 111234589999999986432211110 00011111 2368999999999986
Q ss_pred C
Q 024413 245 Q 245 (268)
Q Consensus 245 ~ 245 (268)
.
T Consensus 119 ~ 119 (187)
T cd04132 119 K 119 (187)
T ss_pred h
Confidence 5
No 472
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.34 E-value=2e-12 Score=104.79 Aligned_cols=68 Identities=19% Similarity=0.192 Sum_probs=41.3
Q ss_pred CEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHH---hhCCCceeeecCCCc
Q 024413 167 DYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY---KTRLPLVLAFNKTDV 243 (268)
Q Consensus 167 ~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~---~~~~p~ilV~NK~Dl 243 (268)
.+.++|+||+..+.. .....+ ..+|++++++|.....+... .... ...+. ..++|+++|+||+|+
T Consensus 50 ~~~l~D~~G~~~~~~------~~~~~~--~~~d~~ilv~d~~~~~s~~~-~~~~---l~~~~~~~~~~~pivvv~nK~D~ 117 (164)
T smart00175 50 KLQIWDTAGQERFRS------ITSSYY--RGAVGALLVYDITNRESFEN-LKNW---LKELREYADPNVVIMLVGNKSDL 117 (164)
T ss_pred EEEEEECCChHHHHH------HHHHHh--CCCCEEEEEEECCCHHHHHH-HHHH---HHHHHHhCCCCCeEEEEEEchhc
Confidence 578999999755421 112222 34799999999965322211 1111 12221 146899999999998
Q ss_pred CCh
Q 024413 244 AQH 246 (268)
Q Consensus 244 ~~~ 246 (268)
.+.
T Consensus 118 ~~~ 120 (164)
T smart00175 118 EDQ 120 (164)
T ss_pred ccc
Confidence 764
No 473
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.34 E-value=7.3e-12 Score=102.34 Aligned_cols=73 Identities=16% Similarity=0.152 Sum_probs=42.4
Q ss_pred CEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeecCCCcCCh
Q 024413 167 DYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQH 246 (268)
Q Consensus 167 ~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK~Dl~~~ 246 (268)
.+.++|+||+.++.. .....+ ..+|++++++|......... .......+......+.|.++|+||+|+...
T Consensus 57 ~~~~~D~~g~~~~~~------~~~~~~--~~~d~~i~v~d~~~~~s~~~-~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~ 127 (169)
T cd04114 57 KLQIWDTAGQERFRS------ITQSYY--RSANALILTYDITCEESFRC-LPEWLREIEQYANNKVITILVGNKIDLAER 127 (169)
T ss_pred EEEEEECCCcHHHHH------HHHHHh--cCCCEEEEEEECcCHHHHHH-HHHHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 578999999855421 112222 34799999999864321111 111111112223346899999999999755
Q ss_pred hh
Q 024413 247 EF 248 (268)
Q Consensus 247 ~~ 248 (268)
++
T Consensus 128 ~~ 129 (169)
T cd04114 128 RE 129 (169)
T ss_pred cc
Confidence 43
No 474
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.33 E-value=4.3e-12 Score=107.75 Aligned_cols=75 Identities=17% Similarity=0.160 Sum_probs=41.4
Q ss_pred CEEEEeCCCCcchhhhhhHHHHHH-HHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHH------hhCCCceeeec
Q 024413 167 DYVLVDTPGQIEIFTWSASGAIIT-EAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY------KTRLPLVLAFN 239 (268)
Q Consensus 167 ~illlDePG~~~~~~~~~~~~~i~-~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~------~~~~p~ilV~N 239 (268)
.+.|||+||..++.. ........ .......+|++++|+|.... .++.. .......+. ..++|+++|+|
T Consensus 50 ~l~i~Dt~G~~~~~~-~~~~e~~~~~~~~~~~ad~iilv~D~~~~---~S~~~-~~~~~~~i~~~~~~~~~~~piiivgN 124 (198)
T cd04142 50 DLHILDVPNMQRYPG-TAGQEWMDPRFRGLRNSRAFILVYDICSP---DSFHY-VKLLRQQILETRPAGNKEPPIVVVGN 124 (198)
T ss_pred EEEEEeCCCcccCCc-cchhHHHHHHHhhhccCCEEEEEEECCCH---HHHHH-HHHHHHHHHHhcccCCCCCCEEEEEE
Confidence 578999999865421 11111111 11112458999999999643 22211 010011221 24689999999
Q ss_pred CCCcCCh
Q 024413 240 KTDVAQH 246 (268)
Q Consensus 240 K~Dl~~~ 246 (268)
|+|+...
T Consensus 125 K~Dl~~~ 131 (198)
T cd04142 125 KRDQQRH 131 (198)
T ss_pred Ccccccc
Confidence 9999654
No 475
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.33 E-value=5.3e-12 Score=102.25 Aligned_cols=74 Identities=15% Similarity=0.245 Sum_probs=43.0
Q ss_pred CCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHH--HHHhhCCCceeeecCCC
Q 024413 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS--ILYKTRLPLVLAFNKTD 242 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~--~l~~~~~p~ilV~NK~D 242 (268)
+..+.|+|+||+.++.. ....++ ..+|++++|+|+.................. .+...++|+++|+||+|
T Consensus 44 ~~~~~l~Dt~G~~~~~~------~~~~~~--~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D 115 (162)
T cd04157 44 NLSFTAFDMSGQGKYRG------LWEHYY--KNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMD 115 (162)
T ss_pred CEEEEEEECCCCHhhHH------HHHHHH--ccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCcc
Confidence 34689999999866422 222223 357999999999653221110000000001 11124689999999999
Q ss_pred cCCh
Q 024413 243 VAQH 246 (268)
Q Consensus 243 l~~~ 246 (268)
+.+.
T Consensus 116 l~~~ 119 (162)
T cd04157 116 LPDA 119 (162)
T ss_pred ccCC
Confidence 9754
No 476
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.33 E-value=5.3e-12 Score=106.95 Aligned_cols=71 Identities=17% Similarity=0.171 Sum_probs=40.3
Q ss_pred CEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCc--hh-hHHHHHHHHHHHHhhCCCceeeecCCCc
Q 024413 167 DYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANP--MT-FMSNMLYACSILYKTRLPLVLAFNKTDV 243 (268)
Q Consensus 167 ~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~--~~-~~~~~~~~~~~l~~~~~p~ilV~NK~Dl 243 (268)
.+.|||+||+..+.. ....++ ..++++++|+|......- .. |...+...........+|+++|+||+|+
T Consensus 51 ~l~l~Dt~G~~~~~~------~~~~~~--~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl 122 (201)
T cd04107 51 RLQLWDIAGQERFGG------MTRVYY--RGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDL 122 (201)
T ss_pred EEEEEECCCchhhhh------hHHHHh--CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCc
Confidence 589999999965421 222223 357999999998542111 11 1111110000001246899999999999
Q ss_pred CC
Q 024413 244 AQ 245 (268)
Q Consensus 244 ~~ 245 (268)
.+
T Consensus 123 ~~ 124 (201)
T cd04107 123 KK 124 (201)
T ss_pred cc
Confidence 63
No 477
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.33 E-value=1e-11 Score=118.32 Aligned_cols=129 Identities=20% Similarity=0.278 Sum_probs=72.2
Q ss_pred CeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccchhhh
Q 024413 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (268)
Q Consensus 69 g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l 148 (268)
---|+|+|.++||||||+|.|++..+. ....++++. .++.....
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpk-------------IadypfTTl------------------~P~lGvv~----- 202 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPK-------------IADYPFTTL------------------VPNLGVVQ----- 202 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCcc-------------ccccCcccc------------------cceEEEEE-----
Confidence 345899999999999999999985322 122233210 00001010
Q ss_pred cHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhh-HHHHHHHHHhccCCcEEEEEEcCCCc---CCchhhHHHHHHHH
Q 024413 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSA-SGAIITEAFASTFPTVVTYVVDTPRS---ANPMTFMSNMLYAC 224 (268)
Q Consensus 149 S~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~-~~~~i~~~~~~~~~d~vv~vvD~~~~---~~~~~~~~~~~~~~ 224 (268)
..+.++.|+|+||+.+...... +.....+++ ..++++++|+|+... .++......+...+
T Consensus 203 --------------~~~~~f~laDtPGliegas~g~gLg~~fLrhi--eradvLv~VVD~s~~e~~rdp~~d~~~i~~EL 266 (500)
T PRK12296 203 --------------AGDTRFTVADVPGLIPGASEGKGLGLDFLRHI--ERCAVLVHVVDCATLEPGRDPLSDIDALEAEL 266 (500)
T ss_pred --------------ECCeEEEEEECCCCccccchhhHHHHHHHHHH--HhcCEEEEEECCcccccccCchhhHHHHHHHH
Confidence 1245799999999976422211 122222222 447999999999642 12221111111001
Q ss_pred HHH-----------HhhCCCceeeecCCCcCChhhh
Q 024413 225 SIL-----------YKTRLPLVLAFNKTDVAQHEFA 249 (268)
Q Consensus 225 ~~l-----------~~~~~p~ilV~NK~Dl~~~~~~ 249 (268)
... ...++|.|+|+||+|+.+..+.
T Consensus 267 ~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el 302 (500)
T PRK12296 267 AAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAREL 302 (500)
T ss_pred HHhhhcccccchhhhhcCCCEEEEEECccchhhHHH
Confidence 111 1246899999999999865543
No 478
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.33 E-value=3.3e-12 Score=102.06 Aligned_cols=67 Identities=21% Similarity=0.224 Sum_probs=40.9
Q ss_pred CCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHh---hCCCceeeecCCC
Q 024413 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK---TRLPLVLAFNKTD 242 (268)
Q Consensus 166 ~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~---~~~p~ilV~NK~D 242 (268)
.++.++|+||+..+.. .....+ ..+|++++++|+... ..+.. .......+.. ...|+++|+||+|
T Consensus 49 ~~~~l~D~~g~~~~~~------~~~~~~--~~~d~ii~v~d~~~~---~~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D 116 (159)
T cd00154 49 VKLQIWDTAGQERFRS------ITPSYY--RGAHGAILVYDITNR---ESFEN-LDKWLKELKEYAPENIPIILVGNKID 116 (159)
T ss_pred EEEEEEecCChHHHHH------HHHHHh--cCCCEEEEEEECCCH---HHHHH-HHHHHHHHHHhCCCCCcEEEEEEccc
Confidence 4689999999855321 222222 347999999999652 11111 1111223333 3589999999999
Q ss_pred cC
Q 024413 243 VA 244 (268)
Q Consensus 243 l~ 244 (268)
+.
T Consensus 117 ~~ 118 (159)
T cd00154 117 LE 118 (159)
T ss_pred cc
Confidence 96
No 479
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.33 E-value=1.2e-11 Score=102.11 Aligned_cols=74 Identities=15% Similarity=0.090 Sum_probs=42.5
Q ss_pred CCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeecCCCcC
Q 024413 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA 244 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK~Dl~ 244 (268)
+..+.++|+||+..+.. ....++ ..+|++++|+|+.......................+.|+++|+||+|+.
T Consensus 57 ~~~l~l~D~~G~~~~~~------~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 128 (173)
T cd04154 57 GYKLNIWDVGGQKTLRP------YWRNYF--ESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLP 128 (173)
T ss_pred CEEEEEEECCCCHHHHH------HHHHHh--CCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccc
Confidence 34689999999865421 122223 3579999999986531111110000100111122578999999999997
Q ss_pred Ch
Q 024413 245 QH 246 (268)
Q Consensus 245 ~~ 246 (268)
..
T Consensus 129 ~~ 130 (173)
T cd04154 129 GA 130 (173)
T ss_pred cC
Confidence 53
No 480
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.33 E-value=1.5e-11 Score=112.00 Aligned_cols=152 Identities=21% Similarity=0.209 Sum_probs=88.8
Q ss_pred cCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCC-----CCc
Q 024413 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPN-----GGI 141 (268)
Q Consensus 67 ~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----~~~ 141 (268)
.+..+++|+|++|||||||++.|...+...+..+.+...|+........ -+.+..+. +.+.-.+. ...
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~ga---llgd~~r~----~~~~~~~~~~~r~~~~ 126 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGS---ILGDKTRM----ERLSRHPNAFIRPSPS 126 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchh---hhchHhHH----HhhcCCCCeEEEecCC
Confidence 4567999999999999999999999988777788888777643321110 01232222 22222221 011
Q ss_pred ccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHH
Q 024413 142 LTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNML 221 (268)
Q Consensus 142 ~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~ 221 (268)
+|....+|.--.+.+.++. ..+.+++|+||+|...... .+ ...+|+++++++...+.+.....
T Consensus 127 ~~~l~~~a~~~~~~~~~~~--~~g~d~viieT~Gv~qs~~------~i-----~~~aD~vlvv~~p~~gd~iq~~k---- 189 (332)
T PRK09435 127 SGTLGGVARKTRETMLLCE--AAGYDVILVETVGVGQSET------AV-----AGMVDFFLLLQLPGAGDELQGIK---- 189 (332)
T ss_pred cccccchHHHHHHHHHHHh--ccCCCEEEEECCCCccchh------HH-----HHhCCEEEEEecCCchHHHHHHH----
Confidence 2222223333344444333 3578999999999975321 11 23489999998743332221111
Q ss_pred HHHHHHHhhCCCceeeecCCCcCChh
Q 024413 222 YACSILYKTRLPLVLAFNKTDVAQHE 247 (268)
Q Consensus 222 ~~~~~l~~~~~p~ilV~NK~Dl~~~~ 247 (268)
....+.+.++|+||+|+.+..
T Consensus 190 -----~gi~E~aDIiVVNKaDl~~~~ 210 (332)
T PRK09435 190 -----KGIMELADLIVINKADGDNKT 210 (332)
T ss_pred -----hhhhhhhheEEeehhcccchh
Confidence 112345679999999998643
No 481
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.32 E-value=2.3e-11 Score=100.38 Aligned_cols=69 Identities=17% Similarity=0.291 Sum_probs=45.8
Q ss_pred CCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeecCCCcC
Q 024413 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA 244 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK~Dl~ 244 (268)
+..+.||||||+.++.. ....++ ..+|++++|+|+.......+.. .+..+...++|+++|+||+|+.
T Consensus 66 ~~~~~l~Dt~G~~~~~~------~~~~~~--~~ad~~i~v~D~~~~~~~~~~~-----~~~~~~~~~~~iiiv~NK~Dl~ 132 (179)
T cd01890 66 EYLLNLIDTPGHVDFSY------EVSRSL--AACEGALLLVDATQGVEAQTLA-----NFYLALENNLEIIPVINKIDLP 132 (179)
T ss_pred cEEEEEEECCCChhhHH------HHHHHH--HhcCeEEEEEECCCCccHhhHH-----HHHHHHHcCCCEEEEEECCCCC
Confidence 44678999999977522 223333 3479999999997654433321 1223334678999999999986
Q ss_pred Ch
Q 024413 245 QH 246 (268)
Q Consensus 245 ~~ 246 (268)
+.
T Consensus 133 ~~ 134 (179)
T cd01890 133 SA 134 (179)
T ss_pred cC
Confidence 53
No 482
>PRK04213 GTP-binding protein; Provisional
Probab=99.32 E-value=1.5e-11 Score=103.95 Aligned_cols=81 Identities=19% Similarity=0.168 Sum_probs=45.2
Q ss_pred CEEEEeCCCCcchhh-----hhhHHHHHHHHHhc--cCCcEEEEEEcCCCcCCchh-hHH-----HHHHHHHHHHhhCCC
Q 024413 167 DYVLVDTPGQIEIFT-----WSASGAIITEAFAS--TFPTVVTYVVDTPRSANPMT-FMS-----NMLYACSILYKTRLP 233 (268)
Q Consensus 167 ~illlDePG~~~~~~-----~~~~~~~i~~~~~~--~~~d~vv~vvD~~~~~~~~~-~~~-----~~~~~~~~l~~~~~p 233 (268)
++.++|+||+..... ..........++.. ..++++++|+|+.......+ |.. ........+...++|
T Consensus 53 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p 132 (201)
T PRK04213 53 DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIP 132 (201)
T ss_pred ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCC
Confidence 689999999643211 11122223333332 34689999999864332211 100 001112334456899
Q ss_pred ceeeecCCCcCChh
Q 024413 234 LVLAFNKTDVAQHE 247 (268)
Q Consensus 234 ~ilV~NK~Dl~~~~ 247 (268)
+++|+||+|+...+
T Consensus 133 ~iiv~NK~Dl~~~~ 146 (201)
T PRK04213 133 PIVAVNKMDKIKNR 146 (201)
T ss_pred eEEEEECccccCcH
Confidence 99999999997644
No 483
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=99.32 E-value=1e-11 Score=112.60 Aligned_cols=161 Identities=20% Similarity=0.201 Sum_probs=97.6
Q ss_pred eEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecc-cCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccchhhh
Q 024413 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNL-DPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (268)
Q Consensus 70 ~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l 148 (268)
.+++|.|.-|||||||+|.|+......+-.|.++.- +...+. ...+...+. +.+. -.++|+||.++..
T Consensus 2 pVtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~---~~~l~~~~e-------~~~E-l~nGCICCT~r~d 70 (323)
T COG0523 2 PVTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDG---GALLSDTGE-------EVVE-LTNGCICCTVRDD 70 (323)
T ss_pred CEEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccC---CCccccCCc-------cEEE-eCCceEEEeccch
Confidence 367999999999999999999876633333333221 011110 000000000 0111 2479999988765
Q ss_pred cHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHH-HHHhc-cCCcEEEEEEcCCCcCCchhhHHHHHHHHHH
Q 024413 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIIT-EAFAS-TFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (268)
Q Consensus 149 S~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~-~~~~~-~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~ 226 (268)
--.+.+++.- +-..|+++++.+.|+.+|.+ ....... ..++. ..-|.+|.|||+.+.....+... ...
T Consensus 71 l~~~~~~L~~---~~~~~D~ivIEtTGlA~P~p--v~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~-----~~~ 140 (323)
T COG0523 71 LLPALERLLR---RRDRPDRLVIETTGLADPAP--VIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIA-----ELA 140 (323)
T ss_pred hHHHHHHHHh---ccCCCCEEEEeCCCCCCCHH--HHHHhccccccccceeeceEEEEEeHHHhhhhHHHHH-----HHH
Confidence 5555555433 34569999999999999843 2222221 22322 23589999999987665544211 123
Q ss_pred HHhhCCCceeeecCCCcCChhhhhh
Q 024413 227 LYKTRLPLVLAFNKTDVAQHEFALE 251 (268)
Q Consensus 227 l~~~~~p~ilV~NK~Dl~~~~~~~~ 251 (268)
..|.....++|+||+|+++++++..
T Consensus 141 ~~Qia~AD~ivlNK~Dlv~~~~l~~ 165 (323)
T COG0523 141 EDQLAFADVIVLNKTDLVDAEELEA 165 (323)
T ss_pred HHHHHhCcEEEEecccCCCHHHHHH
Confidence 3467788999999999999876443
No 484
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.32 E-value=4.6e-12 Score=103.46 Aligned_cols=69 Identities=19% Similarity=0.173 Sum_probs=41.5
Q ss_pred CEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHh---hCCCceeeecCCCc
Q 024413 167 DYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK---TRLPLVLAFNKTDV 243 (268)
Q Consensus 167 ~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~---~~~p~ilV~NK~Dl 243 (268)
.+.|+|+||+..+.. ....++ ..+|++++++|+... ..+.. +......+.. ...|+++|+||+|+
T Consensus 52 ~~~i~D~~G~~~~~~------~~~~~~--~~~~~ii~v~d~~~~---~s~~~-l~~~~~~~~~~~~~~~~~iiv~nK~Dl 119 (166)
T cd01869 52 KLQIWDTAGQERFRT------ITSSYY--RGAHGIIIVYDVTDQ---ESFNN-VKQWLQEIDRYASENVNKLLVGNKCDL 119 (166)
T ss_pred EEEEEECCCcHhHHH------HHHHHh--CcCCEEEEEEECcCH---HHHHh-HHHHHHHHHHhCCCCCcEEEEEEChhc
Confidence 578999999865421 222222 357999999998542 22111 1111122222 35899999999998
Q ss_pred CChh
Q 024413 244 AQHE 247 (268)
Q Consensus 244 ~~~~ 247 (268)
....
T Consensus 120 ~~~~ 123 (166)
T cd01869 120 TDKR 123 (166)
T ss_pred cccc
Confidence 6543
No 485
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.32 E-value=3.8e-12 Score=104.16 Aligned_cols=69 Identities=17% Similarity=0.127 Sum_probs=41.7
Q ss_pred CEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHH---HhhCCCceeeecCCCc
Q 024413 167 DYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL---YKTRLPLVLAFNKTDV 243 (268)
Q Consensus 167 ~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l---~~~~~p~ilV~NK~Dl 243 (268)
++.|||+||+..+.. ....++ ..++++++|+|.... ..+.. +......+ .....|+++|+||+|+
T Consensus 52 ~l~i~Dt~G~~~~~~------~~~~~~--~~~~~~ilv~d~~~~---~s~~~-~~~~~~~~~~~~~~~~~iiiv~nK~Dl 119 (166)
T cd04122 52 KLQIWDTAGQERFRA------VTRSYY--RGAAGALMVYDITRR---STYNH-LSSWLTDARNLTNPNTVIFLIGNKADL 119 (166)
T ss_pred EEEEEECCCcHHHHH------HHHHHh--cCCCEEEEEEECCCH---HHHHH-HHHHHHHHHHhCCCCCeEEEEEECccc
Confidence 679999999865421 222223 357999999998642 22111 11111111 2345789999999999
Q ss_pred CChh
Q 024413 244 AQHE 247 (268)
Q Consensus 244 ~~~~ 247 (268)
..+.
T Consensus 120 ~~~~ 123 (166)
T cd04122 120 EAQR 123 (166)
T ss_pred cccc
Confidence 7553
No 486
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.32 E-value=1.4e-11 Score=99.42 Aligned_cols=78 Identities=18% Similarity=0.215 Sum_probs=47.3
Q ss_pred CCEEEEeCCCCcchhhh----hhHHHHHHHHHhcc-CCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeecC
Q 024413 166 LDYVLVDTPGQIEIFTW----SASGAIITEAFAST-FPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNK 240 (268)
Q Consensus 166 ~~illlDePG~~~~~~~----~~~~~~i~~~~~~~-~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK 240 (268)
..+.++|+||+...... ......+..++... ..+.+++++|........... ...++...+.|+++|+||
T Consensus 45 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~-----~~~~l~~~~~~vi~v~nK 119 (170)
T cd01876 45 DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLE-----MLDWLEELGIPFLVVLTK 119 (170)
T ss_pred CeEEEecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHH-----HHHHHHHcCCCEEEEEEc
Confidence 37899999997553111 11222333334332 357888999987554333211 124455567899999999
Q ss_pred CCcCChhh
Q 024413 241 TDVAQHEF 248 (268)
Q Consensus 241 ~Dl~~~~~ 248 (268)
+|+.++.+
T Consensus 120 ~D~~~~~~ 127 (170)
T cd01876 120 ADKLKKSE 127 (170)
T ss_pred hhcCChHH
Confidence 99976543
No 487
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.32 E-value=5.3e-12 Score=103.65 Aligned_cols=68 Identities=21% Similarity=0.174 Sum_probs=41.1
Q ss_pred CEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHH---hhCCCceeeecCCCc
Q 024413 167 DYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY---KTRLPLVLAFNKTDV 243 (268)
Q Consensus 167 ~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~---~~~~p~ilV~NK~Dl 243 (268)
.+.|||+||+.++.. ....++ ..+|++++++|+.. +..+.. +......+. ..+.|+++|+||+|+
T Consensus 54 ~~~i~Dt~G~~~~~~------~~~~~~--~~~d~il~v~d~~~---~~s~~~-~~~~~~~~~~~~~~~~pvivv~nK~Dl 121 (168)
T cd01866 54 KLQIWDTAGQESFRS------ITRSYY--RGAAGALLVYDITR---RETFNH-LTSWLEDARQHSNSNMTIMLIGNKCDL 121 (168)
T ss_pred EEEEEECCCcHHHHH------HHHHHh--ccCCEEEEEEECCC---HHHHHH-HHHHHHHHHHhCCCCCcEEEEEECccc
Confidence 689999999755421 122222 35799999999863 222111 111112222 246899999999999
Q ss_pred CCh
Q 024413 244 AQH 246 (268)
Q Consensus 244 ~~~ 246 (268)
..+
T Consensus 122 ~~~ 124 (168)
T cd01866 122 ESR 124 (168)
T ss_pred ccc
Confidence 743
No 488
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.31 E-value=1.7e-11 Score=104.43 Aligned_cols=75 Identities=23% Similarity=0.409 Sum_probs=44.5
Q ss_pred CCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHH-HHH--HHhhCCCceeeecCC
Q 024413 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYA-CSI--LYKTRLPLVLAFNKT 241 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~-~~~--l~~~~~p~ilV~NK~ 241 (268)
+..+.|+|+||+..+. .....+++.. .+.+|||+|+.............+.. +.. ......|+++|+||+
T Consensus 47 ~~~~~l~D~pG~~~~~------~~~~~~~~~~-~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~ 119 (203)
T cd04105 47 GKKFRLVDVPGHPKLR------DKLLETLKNS-AKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQ 119 (203)
T ss_pred CceEEEEECCCCHHHH------HHHHHHHhcc-CCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecch
Confidence 3468999999986642 2333444332 49999999997642211111111110 111 112479999999999
Q ss_pred CcCCh
Q 024413 242 DVAQH 246 (268)
Q Consensus 242 Dl~~~ 246 (268)
|+...
T Consensus 120 Dl~~a 124 (203)
T cd04105 120 DLFTA 124 (203)
T ss_pred hhccc
Confidence 98653
No 489
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=7.1e-12 Score=117.22 Aligned_cols=138 Identities=13% Similarity=0.061 Sum_probs=101.8
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCccccc--ccc--------------hhhHHHHHHH
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAA--NID--------------IRDTIRYKEV 129 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~--~~~--------------~~~~~~~~~~ 129 (268)
......++++|+||+||||+++++.+...|..|.+.+...--+.. ..+.+ .++ ..-...+.+-
T Consensus 387 ~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r~ri~~-f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~h 465 (582)
T KOG0062|consen 387 RESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPRLRIKY-FAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRH 465 (582)
T ss_pred cchhhhhheeccCchhHHHHHHHHhccCCcccceeeecccceecc-hhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHH
Confidence 445567899999999999999999999999888887755321110 00000 000 0124567778
Q ss_pred HHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCC
Q 024413 130 MKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTP 208 (268)
Q Consensus 130 l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~ 208 (268)
+..|||+....... +..||||||-||++|...+.+|.+++||||+-..+ ......+.+.++....-+|++.+|.+
T Consensus 466 l~~~Gl~g~la~~s-i~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD---~dsl~AL~~Al~~F~GGVv~VSHd~~ 540 (582)
T KOG0062|consen 466 LGSFGLSGELALQS-IASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLD---RDSLGALAKALKNFNGGVVLVSHDEE 540 (582)
T ss_pred HHhcCCCchhhhcc-ccccCCcchhHHHHHHHhcCCCcEEEecCCCcccc---HHHHHHHHHHHHhcCCcEEEEECcHH
Confidence 89999997765554 88999999999999999999999999999997653 23344566667666778888888874
No 490
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.31 E-value=5.1e-12 Score=102.57 Aligned_cols=72 Identities=18% Similarity=0.209 Sum_probs=42.6
Q ss_pred CCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeecCCCcCC
Q 024413 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQ 245 (268)
Q Consensus 166 ~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK~Dl~~ 245 (268)
..+.|+|+||+..+.. .....+ ..+|++++++|.....+... ..........+...+.|+++|+||+|+..
T Consensus 49 ~~l~l~D~~G~~~~~~------~~~~~~--~~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 119 (161)
T cd04113 49 VKLQIWDTAGQERFRS------VTRSYY--RGAAGALLVYDITNRTSFEA-LPTWLSDARALASPNIVVILVGNKSDLAD 119 (161)
T ss_pred EEEEEEECcchHHHHH------hHHHHh--cCCCEEEEEEECCCHHHHHH-HHHHHHHHHHhCCCCCeEEEEEEchhcch
Confidence 3688999999865421 112222 34799999999965322211 11111111122235789999999999975
Q ss_pred h
Q 024413 246 H 246 (268)
Q Consensus 246 ~ 246 (268)
.
T Consensus 120 ~ 120 (161)
T cd04113 120 Q 120 (161)
T ss_pred h
Confidence 4
No 491
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.31 E-value=1.4e-11 Score=107.50 Aligned_cols=69 Identities=20% Similarity=0.324 Sum_probs=48.6
Q ss_pred CCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeecCCCcC
Q 024413 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA 244 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK~Dl~ 244 (268)
+.++.|+||||+.++.. ....++ ..+|.+++|+|+..+..... ...+..+...++|.++|+||+|+.
T Consensus 63 ~~~i~liDTPG~~~f~~------~~~~~l--~~aD~~IlVvd~~~g~~~~~-----~~~~~~~~~~~~P~iivvNK~D~~ 129 (237)
T cd04168 63 DTKVNLIDTPGHMDFIA------EVERSL--SVLDGAILVISAVEGVQAQT-----RILWRLLRKLNIPTIIFVNKIDRA 129 (237)
T ss_pred CEEEEEEeCCCccchHH------HHHHHH--HHhCeEEEEEeCCCCCCHHH-----HHHHHHHHHcCCCEEEEEECcccc
Confidence 56899999999987632 223333 33699999999987654332 112345556689999999999998
Q ss_pred Ch
Q 024413 245 QH 246 (268)
Q Consensus 245 ~~ 246 (268)
..
T Consensus 130 ~a 131 (237)
T cd04168 130 GA 131 (237)
T ss_pred CC
Confidence 54
No 492
>PTZ00369 Ras-like protein; Provisional
Probab=99.31 E-value=3e-12 Score=107.49 Aligned_cols=71 Identities=18% Similarity=0.171 Sum_probs=40.8
Q ss_pred CEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHH-HHHHhhCCCceeeecCCCcCC
Q 024413 167 DYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC-SILYKTRLPLVLAFNKTDVAQ 245 (268)
Q Consensus 167 ~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~-~~l~~~~~p~ilV~NK~Dl~~ 245 (268)
.+.|||+||+.++.. ....++ ..++++++++|.....+-.. ........ ......+.|+++|+||+|+.+
T Consensus 54 ~l~i~Dt~G~~~~~~------l~~~~~--~~~d~iilv~D~s~~~s~~~-~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~ 124 (189)
T PTZ00369 54 LLDILDTAGQEEYSA------MRDQYM--RTGQGFLCVYSITSRSSFEE-IASFREQILRVKDKDRVPMILVGNKCDLDS 124 (189)
T ss_pred EEEEEeCCCCccchh------hHHHHh--hcCCEEEEEEECCCHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 467899999977532 222223 34799999999854322111 11001000 111123679999999999865
Q ss_pred h
Q 024413 246 H 246 (268)
Q Consensus 246 ~ 246 (268)
.
T Consensus 125 ~ 125 (189)
T PTZ00369 125 E 125 (189)
T ss_pred c
Confidence 4
No 493
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.31 E-value=2.6e-11 Score=98.60 Aligned_cols=70 Identities=21% Similarity=0.263 Sum_probs=42.5
Q ss_pred CCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHh--hCCCceeeecCCCc
Q 024413 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK--TRLPLVLAFNKTDV 243 (268)
Q Consensus 166 ~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~--~~~p~ilV~NK~Dl 243 (268)
.++.+||+||+..+.. .....+ ..+|++++|+|......... .......+.. ...|+++|+||+|+
T Consensus 52 ~~l~i~Dt~G~~~~~~------~~~~~~--~~~d~ii~v~d~~~~~s~~~----~~~~~~~~~~~~~~~p~ilv~nK~Dl 119 (164)
T cd04101 52 VELFIFDSAGQELYSD------MVSNYW--ESPSVFILVYDVSNKASFEN----CSRWVNKVRTASKHMPGVLVGNKMDL 119 (164)
T ss_pred EEEEEEECCCHHHHHH------HHHHHh--CCCCEEEEEEECcCHHHHHH----HHHHHHHHHHhCCCCCEEEEEECccc
Confidence 4689999999855421 222222 45799999999854311111 1111122222 35899999999999
Q ss_pred CChh
Q 024413 244 AQHE 247 (268)
Q Consensus 244 ~~~~ 247 (268)
.+..
T Consensus 120 ~~~~ 123 (164)
T cd04101 120 ADKA 123 (164)
T ss_pred cccc
Confidence 7654
No 494
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.30 E-value=1.1e-11 Score=100.63 Aligned_cols=71 Identities=23% Similarity=0.220 Sum_probs=42.2
Q ss_pred CCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHH---hhCCCceeeecCC
Q 024413 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY---KTRLPLVLAFNKT 241 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~---~~~~p~ilV~NK~ 241 (268)
+.++.|+|+||+..+.. ....++ ..++++++|+|+........... .. ...+. ..++|+++|+||+
T Consensus 42 ~~~~~i~Dt~G~~~~~~------~~~~~~--~~~~~ii~v~d~~~~~~~~~~~~-~~--~~~~~~~~~~~~piiiv~nK~ 110 (158)
T cd04151 42 NLKFQVWDLGGQTSIRP------YWRCYY--SNTDAIIYVVDSTDRDRLGTAKE-EL--HAMLEEEELKGAVLLVFANKQ 110 (158)
T ss_pred CEEEEEEECCCCHHHHH------HHHHHh--cCCCEEEEEEECCCHHHHHHHHH-HH--HHHHhchhhcCCcEEEEEeCC
Confidence 44689999999965421 111222 35899999999864311111011 01 11111 2368999999999
Q ss_pred CcCCh
Q 024413 242 DVAQH 246 (268)
Q Consensus 242 Dl~~~ 246 (268)
|+.+.
T Consensus 111 Dl~~~ 115 (158)
T cd04151 111 DMPGA 115 (158)
T ss_pred CCCCC
Confidence 99753
No 495
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.30 E-value=1.7e-11 Score=102.58 Aligned_cols=69 Identities=17% Similarity=0.248 Sum_probs=41.4
Q ss_pred CCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHH---HhhCCCceeeecCC
Q 024413 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL---YKTRLPLVLAFNKT 241 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l---~~~~~p~ilV~NK~ 241 (268)
+.++.++|+||+..+.. ....++ ..++++++|+|+... ..+..........+ ...++|+++|+||+
T Consensus 60 ~~~~~~~D~~G~~~~~~------~~~~~~--~~ad~ii~vvD~~~~---~~~~~~~~~l~~l~~~~~~~~~piliv~NK~ 128 (184)
T smart00178 60 NIKFTTFDLGGHQQARR------LWKDYF--PEVNGIVYLVDAYDK---ERFAESKRELDALLSDEELATVPFLILGNKI 128 (184)
T ss_pred CEEEEEEECCCCHHHHH------HHHHHh--CCCCEEEEEEECCcH---HHHHHHHHHHHHHHcChhhcCCCEEEEEeCc
Confidence 45789999999865411 122223 457999999999642 11111100101111 12478999999999
Q ss_pred CcC
Q 024413 242 DVA 244 (268)
Q Consensus 242 Dl~ 244 (268)
|+.
T Consensus 129 Dl~ 131 (184)
T smart00178 129 DAP 131 (184)
T ss_pred ccc
Confidence 985
No 496
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.30 E-value=4.4e-12 Score=109.45 Aligned_cols=70 Identities=17% Similarity=0.111 Sum_probs=41.6
Q ss_pred CCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHh----hCCCceeeecCC
Q 024413 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK----TRLPLVLAFNKT 241 (268)
Q Consensus 166 ~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~----~~~p~ilV~NK~ 241 (268)
..+.|||+||+.. .+...+....+|++++|+|..... .+.. .......+.. .++|+++|+||+
T Consensus 50 ~~l~i~Dt~G~~~---------~~~~~~~~~~ad~iilV~d~td~~---S~~~-~~~~~~~l~~~~~~~~~piilV~NK~ 116 (221)
T cd04148 50 STLVVIDHWEQEM---------WTEDSCMQYQGDAFVVVYSVTDRS---SFER-ASELRIQLRRNRQLEDRPIILVGNKS 116 (221)
T ss_pred EEEEEEeCCCcch---------HHHhHHhhcCCCEEEEEEECCCHH---HHHH-HHHHHHHHHHhcCCCCCCEEEEEECh
Confidence 4689999999962 111222111579999999985432 2111 0111122222 368999999999
Q ss_pred CcCChhh
Q 024413 242 DVAQHEF 248 (268)
Q Consensus 242 Dl~~~~~ 248 (268)
|+...++
T Consensus 117 Dl~~~~~ 123 (221)
T cd04148 117 DLARSRE 123 (221)
T ss_pred hccccce
Confidence 9976543
No 497
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.30 E-value=2e-11 Score=98.89 Aligned_cols=69 Identities=26% Similarity=0.273 Sum_probs=41.5
Q ss_pred CCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHH---hhCCCceeeecCCC
Q 024413 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY---KTRLPLVLAFNKTD 242 (268)
Q Consensus 166 ~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~---~~~~p~ilV~NK~D 242 (268)
..+.|+|+||+..+.. ....++ ..+|++++|+|+............. ...+. ..+.|+++|+||+|
T Consensus 44 ~~l~i~D~~G~~~~~~------~~~~~~--~~~~~iv~v~D~~~~~~~~~~~~~~---~~~~~~~~~~~~piilv~nK~D 112 (160)
T cd04156 44 LSLTVWDVGGQEKMRT------VWKCYL--ENTDGLVYVVDSSDEARLDESQKEL---KHILKNEHIKGVPVVLLANKQD 112 (160)
T ss_pred eEEEEEECCCCHhHHH------HHHHHh--ccCCEEEEEEECCcHHHHHHHHHHH---HHHHhchhhcCCCEEEEEECcc
Confidence 4689999999855311 112222 3479999999996543111111111 12221 24789999999999
Q ss_pred cCC
Q 024413 243 VAQ 245 (268)
Q Consensus 243 l~~ 245 (268)
+..
T Consensus 113 l~~ 115 (160)
T cd04156 113 LPG 115 (160)
T ss_pred ccc
Confidence 854
No 498
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.30 E-value=4.6e-12 Score=103.27 Aligned_cols=68 Identities=21% Similarity=0.173 Sum_probs=40.6
Q ss_pred CEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHH---hhCCCceeeecCCCc
Q 024413 167 DYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY---KTRLPLVLAFNKTDV 243 (268)
Q Consensus 167 ~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~---~~~~p~ilV~NK~Dl 243 (268)
.+.|+|+||+..+.. ....++ ..++++++++|.... ..+.. +......+. ..+.|+++|+||+|+
T Consensus 53 ~~~l~D~~g~~~~~~------~~~~~~--~~~~~~i~v~d~~~~---~s~~~-~~~~~~~~~~~~~~~~pi~vv~nK~Dl 120 (165)
T cd01868 53 KAQIWDTAGQERYRA------ITSAYY--RGAVGALLVYDITKK---QTFEN-VERWLKELRDHADSNIVIMLVGNKSDL 120 (165)
T ss_pred EEEEEeCCChHHHHH------HHHHHH--CCCCEEEEEEECcCH---HHHHH-HHHHHHHHHHhCCCCCeEEEEEECccc
Confidence 588999999865421 222222 347889999998632 22111 111112222 225899999999999
Q ss_pred CCh
Q 024413 244 AQH 246 (268)
Q Consensus 244 ~~~ 246 (268)
...
T Consensus 121 ~~~ 123 (165)
T cd01868 121 RHL 123 (165)
T ss_pred ccc
Confidence 754
No 499
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.30 E-value=2.9e-12 Score=103.19 Aligned_cols=71 Identities=17% Similarity=0.117 Sum_probs=40.4
Q ss_pred CEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHH-hhCCCceeeecCCCcCC
Q 024413 167 DYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY-KTRLPLVLAFNKTDVAQ 245 (268)
Q Consensus 167 ~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~-~~~~p~ilV~NK~Dl~~ 245 (268)
.+.++|+||+..+.. .....+ ..+|++++++|......... ............ ....|+++|+||+|+..
T Consensus 48 ~~~l~D~~g~~~~~~------~~~~~~--~~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 118 (160)
T cd00876 48 TLDILDTAGQEEFSA------MRDLYI--RQGDGFILVYSITDRESFEE-IKGYREQILRVKDDEDIPIVLVGNKCDLEN 118 (160)
T ss_pred EEEEEECCChHHHHH------HHHHHH--hcCCEEEEEEECCCHHHHHH-HHHHHHHHHHhcCCCCCcEEEEEECCcccc
Confidence 578999999866422 222222 34699999999854221111 111111011111 14689999999999976
Q ss_pred h
Q 024413 246 H 246 (268)
Q Consensus 246 ~ 246 (268)
.
T Consensus 119 ~ 119 (160)
T cd00876 119 E 119 (160)
T ss_pred c
Confidence 3
No 500
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.30 E-value=3.5e-12 Score=104.28 Aligned_cols=23 Identities=35% Similarity=0.657 Sum_probs=20.7
Q ss_pred EEEEEecCCCCHHHHHHHHHhcc
Q 024413 71 IIIVVGMAGSGKTTFMHRLVCHT 93 (268)
Q Consensus 71 ~v~iiG~~GsGKSTLl~~l~g~~ 93 (268)
.++|+|++|||||||++.+.+..
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~ 24 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKK 24 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998754
Done!