Query 024413
Match_columns 268
No_of_seqs 267 out of 3204
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 07:49:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024413.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024413hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pcj_A ABC transporter, lipopr 99.9 9.9E-25 3.4E-29 187.5 14.0 142 63-207 24-200 (224)
2 3gfo_A Cobalt import ATP-bindi 99.9 9.2E-25 3.1E-29 193.2 14.0 145 62-209 27-206 (275)
3 3fvq_A Fe(3+) IONS import ATP- 99.9 1.1E-24 3.8E-29 198.9 14.6 131 62-194 23-186 (359)
4 3tif_A Uncharacterized ABC tra 99.9 1.1E-24 3.8E-29 188.5 13.6 145 62-207 24-206 (235)
5 3tui_C Methionine import ATP-b 99.9 1.3E-24 4.4E-29 198.7 13.6 117 61-179 46-195 (366)
6 1sgw_A Putative ABC transporte 99.9 1.7E-24 5.9E-29 184.8 12.7 145 63-211 29-197 (214)
7 2olj_A Amino acid ABC transpor 99.9 2.3E-24 8E-29 189.4 13.8 143 62-207 43-219 (263)
8 3rlf_A Maltose/maltodextrin im 99.9 1.9E-24 6.5E-29 198.7 13.7 116 62-179 22-165 (381)
9 4g1u_C Hemin import ATP-bindin 99.9 2.1E-24 7E-29 190.1 13.0 144 62-207 30-208 (266)
10 1g6h_A High-affinity branched- 99.9 3.3E-24 1.1E-28 187.8 13.7 145 62-208 26-214 (257)
11 1vpl_A ABC transporter, ATP-bi 99.9 5.7E-24 2E-28 186.3 14.8 142 63-207 35-206 (256)
12 1b0u_A Histidine permease; ABC 99.9 4.8E-24 1.6E-28 187.4 14.2 143 62-207 25-213 (262)
13 2nq2_C Hypothetical ABC transp 99.9 5.1E-24 1.7E-28 186.3 14.2 142 63-207 25-189 (253)
14 2onk_A Molybdate/tungstate ABC 99.9 7.8E-24 2.7E-28 183.7 14.6 142 63-207 19-187 (240)
15 1z47_A CYSA, putative ABC-tran 99.9 4.8E-24 1.6E-28 194.6 13.5 126 62-189 34-188 (355)
16 2yyz_A Sugar ABC transporter, 99.9 9.6E-24 3.3E-28 192.9 15.3 127 62-190 22-177 (359)
17 3d31_A Sulfate/molybdate ABC t 99.9 5.7E-24 2E-28 193.8 13.5 143 62-206 19-187 (348)
18 2it1_A 362AA long hypothetical 99.9 1.3E-23 4.5E-28 192.2 15.5 126 62-189 22-176 (362)
19 1ji0_A ABC transporter; ATP bi 99.9 6E-24 2.1E-28 184.4 12.2 142 63-207 26-199 (240)
20 2ihy_A ABC transporter, ATP-bi 99.9 9.1E-24 3.1E-28 187.2 13.3 144 62-208 40-224 (279)
21 2yz2_A Putative ABC transporte 99.9 1E-23 3.4E-28 185.7 13.2 143 63-208 27-199 (266)
22 1oxx_K GLCV, glucose, ABC tran 99.9 1.2E-23 4E-28 192.2 12.9 126 62-189 24-183 (353)
23 1g29_1 MALK, maltose transport 99.9 1.7E-23 5.9E-28 192.2 14.0 126 62-189 22-182 (372)
24 1v43_A Sugar-binding transport 99.9 8.7E-24 3E-28 194.1 11.4 126 62-189 30-184 (372)
25 2qi9_C Vitamin B12 import ATP- 99.9 1.5E-23 5.1E-28 182.9 11.9 142 63-207 20-193 (249)
26 2d2e_A SUFC protein; ABC-ATPas 99.9 3E-23 1E-27 181.0 10.4 143 63-207 23-203 (250)
27 1mv5_A LMRA, multidrug resista 99.9 1E-22 3.6E-27 176.8 12.8 143 62-206 21-197 (243)
28 2pjz_A Hypothetical protein ST 99.9 1.3E-22 4.6E-27 178.2 13.2 112 63-178 25-159 (263)
29 2ff7_A Alpha-hemolysin translo 99.9 7.7E-23 2.6E-27 178.2 10.7 143 63-207 29-204 (247)
30 2zu0_C Probable ATP-dependent 99.9 1.9E-22 6.4E-27 177.7 11.7 116 62-179 39-196 (267)
31 2ixe_A Antigen peptide transpo 99.9 2.1E-22 7.3E-27 177.7 11.5 116 62-179 38-188 (271)
32 2pze_A Cystic fibrosis transme 99.9 4E-22 1.4E-26 171.7 7.9 117 62-178 27-161 (229)
33 2cbz_A Multidrug resistance-as 99.9 5.1E-22 1.8E-26 171.9 7.6 117 62-178 24-158 (237)
34 2ghi_A Transport protein; mult 99.9 1.2E-21 4.1E-26 171.9 10.0 144 62-207 39-214 (260)
35 3nh6_A ATP-binding cassette SU 99.9 6.1E-22 2.1E-26 177.4 8.3 116 63-178 74-221 (306)
36 3gd7_A Fusion complex of cysti 99.8 1.9E-21 6.3E-26 179.6 8.5 114 61-177 39-185 (390)
37 3ozx_A RNAse L inhibitor; ATP 99.8 5.3E-21 1.8E-25 183.5 11.7 112 66-179 291-417 (538)
38 3bk7_A ABC transporter ATP-bin 99.8 9.9E-21 3.4E-25 183.9 13.6 112 66-179 379-503 (607)
39 1yqt_A RNAse L inhibitor; ATP- 99.8 1.4E-20 4.8E-25 180.7 11.5 112 66-179 309-433 (538)
40 2bbs_A Cystic fibrosis transme 99.8 3.9E-21 1.3E-25 171.1 6.9 118 61-178 56-190 (290)
41 3j16_B RLI1P; ribosome recycli 99.8 4.9E-20 1.7E-24 179.0 13.2 111 67-179 376-499 (608)
42 3b5x_A Lipid A export ATP-bind 99.8 4.2E-20 1.4E-24 179.0 12.1 118 61-178 361-511 (582)
43 3ozx_A RNAse L inhibitor; ATP 99.8 2.6E-20 8.7E-25 178.8 10.1 126 66-193 22-184 (538)
44 1yqt_A RNAse L inhibitor; ATP- 99.8 2.9E-20 9.8E-25 178.5 10.3 140 65-206 43-217 (538)
45 2yl4_A ATP-binding cassette SU 99.8 6.6E-20 2.3E-24 178.0 12.1 118 62-179 363-515 (595)
46 3b60_A Lipid A export ATP-bind 99.8 8.9E-20 3E-24 176.7 12.9 144 62-207 362-539 (582)
47 3bk7_A ABC transporter ATP-bin 99.8 2.8E-20 9.5E-25 180.8 8.7 140 65-206 113-287 (607)
48 3j16_B RLI1P; ribosome recycli 99.8 5.2E-20 1.8E-24 178.7 9.8 112 66-179 100-253 (608)
49 4a82_A Cystic fibrosis transme 99.8 1.7E-19 5.7E-24 174.7 12.6 116 63-178 361-508 (578)
50 3qf4_B Uncharacterized ABC tra 99.8 9E-20 3.1E-24 177.2 9.8 145 61-207 373-550 (598)
51 3qf4_A ABC transporter, ATP-bi 99.8 3.1E-19 1E-23 173.1 12.7 116 63-178 363-510 (587)
52 3ux8_A Excinuclease ABC, A sub 99.7 1.1E-17 3.8E-22 164.4 14.9 148 59-207 34-264 (670)
53 2iw3_A Elongation factor 3A; a 99.7 2.6E-18 8.8E-23 173.5 9.2 81 124-207 878-958 (986)
54 4f4c_A Multidrug resistance pr 99.7 2.5E-17 8.5E-22 172.4 12.3 131 63-196 1099-1263(1321)
55 3g5u_A MCG1178, multidrug resi 99.7 1.8E-17 6.3E-22 173.0 11.0 117 62-178 409-557 (1284)
56 3g5u_A MCG1178, multidrug resi 99.7 2.2E-17 7.6E-22 172.4 10.1 146 61-208 1051-1231(1284)
57 3ux8_A Excinuclease ABC, A sub 99.7 1.1E-16 3.8E-21 157.4 14.0 82 125-207 522-606 (670)
58 4f4c_A Multidrug resistance pr 99.7 1.4E-16 4.8E-21 166.7 14.4 146 63-208 438-629 (1321)
59 2iw3_A Elongation factor 3A; a 99.7 6.5E-17 2.2E-21 163.3 11.3 115 63-179 455-580 (986)
60 2npi_A Protein CLP1; CLP1-PCF1 99.7 6.3E-18 2.1E-22 159.3 2.3 135 65-207 134-298 (460)
61 1yrb_A ATP(GTP)binding protein 99.7 3.9E-16 1.3E-20 135.4 11.5 178 66-248 11-188 (262)
62 3b85_A Phosphate starvation-in 99.6 8.4E-18 2.9E-22 142.7 -1.1 106 66-177 19-134 (208)
63 4gp7_A Metallophosphoesterase; 99.6 1.7E-16 5.9E-21 130.1 5.6 97 65-177 5-113 (171)
64 3sop_A Neuronal-specific septi 99.6 2.9E-17 1E-21 144.6 1.0 99 70-177 3-125 (270)
65 1ye8_A Protein THEP1, hypothet 99.6 1.7E-16 6E-21 131.3 2.1 122 71-205 2-138 (178)
66 3iev_A GTP-binding protein ERA 99.6 1.8E-15 6.1E-20 135.4 8.1 129 67-248 8-140 (308)
67 1wf3_A GTP-binding protein; GT 99.6 7.6E-15 2.6E-19 131.1 11.7 123 70-248 8-134 (301)
68 2vf7_A UVRA2, excinuclease ABC 99.6 4.3E-15 1.5E-19 148.5 10.0 82 125-207 709-793 (842)
69 3aez_A Pantothenate kinase; tr 99.6 1.7E-16 5.8E-21 142.5 -1.2 109 66-178 87-207 (312)
70 2wji_A Ferrous iron transport 99.5 7.8E-15 2.7E-19 118.5 7.8 75 165-246 49-123 (165)
71 2r6f_A Excinuclease ABC subuni 99.5 3.1E-14 1.1E-18 143.1 12.2 81 125-207 824-908 (972)
72 4aby_A DNA repair protein RECN 99.5 1.9E-14 6.5E-19 133.1 9.9 32 148-179 296-329 (415)
73 3pih_A Uvrabc system protein A 99.5 5.3E-14 1.8E-18 141.7 12.1 82 125-207 784-868 (916)
74 2dyk_A GTP-binding protein; GT 99.5 1.1E-13 3.9E-18 109.9 11.7 75 165-246 48-123 (161)
75 3k53_A Ferrous iron transport 99.5 9.9E-15 3.4E-19 128.0 5.6 76 165-247 49-125 (271)
76 2ygr_A Uvrabc system protein A 99.5 4.6E-14 1.6E-18 142.3 11.1 80 126-207 843-926 (993)
77 1ega_A Protein (GTP-binding pr 99.5 6.8E-15 2.3E-19 131.3 4.1 121 68-245 7-130 (301)
78 2gj8_A MNME, tRNA modification 99.5 2.4E-14 8.1E-19 116.8 6.9 124 67-245 2-129 (172)
79 4dhe_A Probable GTP-binding pr 99.5 2.3E-13 7.7E-18 114.7 13.0 80 165-249 78-162 (223)
80 2pt7_A CAG-ALFA; ATPase, prote 99.5 4.8E-14 1.6E-18 127.5 9.2 109 65-208 167-276 (330)
81 3iby_A Ferrous iron transport 99.5 4.1E-14 1.4E-18 123.4 8.4 76 165-247 47-126 (256)
82 2qm8_A GTPase/ATPase; G protei 99.5 6.9E-14 2.4E-18 126.8 10.1 153 65-245 51-207 (337)
83 3i8s_A Ferrous iron transport 99.5 4.1E-14 1.4E-18 124.5 7.8 76 165-247 49-128 (274)
84 1kao_A RAP2A; GTP-binding prot 99.5 1.4E-14 4.7E-19 115.5 4.1 74 167-248 52-125 (167)
85 3b1v_A Ferrous iron uptake tra 99.5 7.8E-14 2.7E-18 122.8 9.1 120 69-246 3-122 (272)
86 2p67_A LAO/AO transport system 99.5 1E-13 3.5E-18 125.7 9.7 155 66-247 53-210 (341)
87 3a1s_A Iron(II) transport prot 99.5 4.5E-14 1.5E-18 123.3 6.9 76 165-247 51-126 (258)
88 2wjg_A FEOB, ferrous iron tran 99.5 2.2E-13 7.4E-18 111.5 10.5 75 165-246 53-127 (188)
89 3b9q_A Chloroplast SRP recepto 99.5 1.5E-13 5.2E-18 122.7 10.3 156 64-239 95-281 (302)
90 1tq4_A IIGP1, interferon-induc 99.5 2.8E-15 9.5E-20 139.2 -1.2 120 68-191 68-211 (413)
91 3pqc_A Probable GTP-binding pr 99.5 9.1E-13 3.1E-17 108.0 13.7 125 67-248 21-150 (195)
92 1c1y_A RAS-related protein RAP 99.5 5E-14 1.7E-18 112.6 5.6 73 167-247 52-124 (167)
93 3lxx_A GTPase IMAP family memb 99.5 2.1E-13 7.1E-18 117.0 9.7 132 68-249 28-163 (239)
94 1u8z_A RAS-related protein RAL 99.4 3.5E-14 1.2E-18 113.2 4.1 72 167-247 53-125 (168)
95 3kkq_A RAS-related protein M-R 99.4 4.1E-14 1.4E-18 115.4 4.5 73 167-247 67-139 (183)
96 1vma_A Cell division protein F 99.4 7.6E-13 2.6E-17 118.4 13.0 154 66-245 101-263 (306)
97 1svi_A GTP-binding protein YSX 99.4 8.3E-13 2.9E-17 108.6 12.3 81 165-250 68-153 (195)
98 2www_A Methylmalonic aciduria 99.4 6.5E-13 2.2E-17 120.9 12.7 154 67-247 72-228 (349)
99 1r8s_A ADP-ribosylation factor 99.4 5.9E-13 2E-17 106.2 11.0 71 165-246 43-116 (164)
100 3oes_A GTPase rhebl1; small GT 99.4 4E-14 1.4E-18 117.8 4.1 124 66-250 21-148 (201)
101 4dkx_A RAS-related protein RAB 99.4 7.4E-14 2.5E-18 118.8 5.7 77 167-254 63-141 (216)
102 2fn4_A P23, RAS-related protei 99.4 4.7E-14 1.6E-18 114.2 4.0 74 166-247 57-130 (181)
103 1mky_A Probable GTP-binding pr 99.4 4.8E-13 1.6E-17 125.2 11.4 75 165-246 48-125 (439)
104 3bc1_A RAS-related protein RAB 99.4 4E-13 1.4E-17 109.8 9.4 69 166-246 70-142 (195)
105 1zj6_A ADP-ribosylation factor 99.4 9.5E-13 3.3E-17 107.9 11.6 116 67-246 14-132 (187)
106 1upt_A ARL1, ADP-ribosylation 99.4 4.4E-13 1.5E-17 107.6 9.3 116 67-246 5-123 (171)
107 2h17_A ADP-ribosylation factor 99.4 4.8E-13 1.6E-17 109.3 9.6 117 66-246 18-137 (181)
108 3q72_A GTP-binding protein RAD 99.4 7.6E-14 2.6E-18 111.7 4.7 71 166-248 49-123 (166)
109 2erx_A GTP-binding protein DI- 99.4 1.1E-13 3.9E-18 110.9 5.7 71 166-248 51-126 (172)
110 3q85_A GTP-binding protein REM 99.4 6.1E-14 2.1E-18 112.6 4.1 72 166-248 51-126 (169)
111 2a9k_A RAS-related protein RAL 99.4 7.1E-14 2.4E-18 113.7 4.5 72 167-247 67-139 (187)
112 2og2_A Putative signal recogni 99.4 6.9E-13 2.4E-17 121.1 11.3 156 64-239 152-338 (359)
113 1z06_A RAS-related protein RAB 99.4 2.7E-13 9.3E-18 111.4 7.8 75 166-247 69-143 (189)
114 3t5g_A GTP-binding protein RHE 99.4 5.5E-14 1.9E-18 114.4 3.5 75 166-248 54-128 (181)
115 1z0j_A RAB-22, RAS-related pro 99.4 2.6E-13 8.9E-18 108.7 7.4 71 166-248 55-128 (170)
116 3tkl_A RAS-related protein RAB 99.4 5E-13 1.7E-17 109.9 9.0 74 166-248 65-138 (196)
117 1pui_A ENGB, probable GTP-bind 99.4 8.4E-13 2.9E-17 110.1 10.4 123 64-247 21-153 (210)
118 3t1o_A Gliding protein MGLA; G 99.4 4.1E-12 1.4E-16 104.1 14.2 72 166-246 74-150 (198)
119 3gee_A MNME, tRNA modification 99.4 2.2E-13 7.7E-18 128.7 7.5 130 66-249 230-361 (476)
120 2ged_A SR-beta, signal recogni 99.4 7.9E-13 2.7E-17 108.7 9.9 124 67-250 46-175 (193)
121 1z0f_A RAB14, member RAS oncog 99.4 6.3E-13 2.2E-17 107.3 9.1 73 166-247 64-136 (179)
122 2nzj_A GTP-binding protein REM 99.4 2.5E-13 8.6E-18 109.4 6.6 71 167-247 53-127 (175)
123 1nrj_B SR-beta, signal recogni 99.4 1.5E-12 5.1E-17 109.4 11.5 121 67-247 10-136 (218)
124 1z2a_A RAS-related protein RAB 99.4 1.4E-13 4.9E-18 110.0 5.0 70 166-247 54-125 (168)
125 3cbq_A GTP-binding protein REM 99.4 3.9E-13 1.3E-17 111.8 7.7 70 167-247 73-146 (195)
126 3dz8_A RAS-related protein RAB 99.4 2.5E-13 8.5E-18 111.9 6.4 122 66-247 20-144 (191)
127 2g6b_A RAS-related protein RAB 99.4 7.4E-14 2.5E-18 113.3 3.1 72 167-247 61-132 (180)
128 3llu_A RAS-related GTP-binding 99.4 1.5E-12 5.3E-17 107.8 11.1 74 165-246 68-144 (196)
129 2qu8_A Putative nucleolar GTP- 99.4 6.8E-13 2.3E-17 112.8 9.1 127 67-248 27-159 (228)
130 2b6h_A ADP-ribosylation factor 99.4 6.9E-13 2.4E-17 109.8 8.7 117 66-246 26-145 (192)
131 1fzq_A ADP-ribosylation factor 99.4 1.1E-12 3.8E-17 107.4 9.8 71 165-246 59-132 (181)
132 2hjg_A GTP-binding protein ENG 99.4 5.3E-13 1.8E-17 124.8 8.8 75 165-246 50-126 (436)
133 2bov_A RAla, RAS-related prote 99.4 1.4E-13 4.9E-18 114.1 4.4 69 167-247 63-135 (206)
134 2efe_B Small GTP-binding prote 99.4 1.7E-12 5.8E-17 105.2 10.7 70 166-247 61-133 (181)
135 3qf7_A RAD50; ABC-ATPase, ATPa 99.4 1.1E-12 3.7E-17 120.1 10.5 65 143-207 275-345 (365)
136 4djt_A GTP-binding nuclear pro 99.4 8.3E-13 2.8E-17 110.9 8.9 74 167-249 62-135 (218)
137 1zd9_A ADP-ribosylation factor 99.4 1.3E-12 4.4E-17 107.5 9.8 118 66-246 19-139 (188)
138 2y8e_A RAB-protein 6, GH09086P 99.4 6.2E-13 2.1E-17 107.3 7.7 72 167-247 64-135 (179)
139 1ek0_A Protein (GTP-binding pr 99.4 1.5E-12 5.2E-17 104.0 9.9 69 166-246 52-123 (170)
140 4dsu_A GTPase KRAS, isoform 2B 99.4 1.7E-13 5.8E-18 111.8 4.4 68 167-246 53-124 (189)
141 3clv_A RAB5 protein, putative; 99.4 6.8E-13 2.3E-17 109.0 8.0 66 166-243 93-159 (208)
142 3bwd_D RAC-like GTP-binding pr 99.4 7.9E-13 2.7E-17 107.3 8.3 72 166-248 56-129 (182)
143 2lkc_A Translation initiation 99.4 1.2E-12 4.2E-17 105.8 9.4 117 66-246 5-122 (178)
144 2fg5_A RAB-22B, RAS-related pr 99.4 1.6E-12 5.5E-17 107.2 10.2 69 166-246 72-143 (192)
145 2ce2_X GTPase HRAS; signaling 99.4 8.6E-13 2.9E-17 104.7 8.2 68 166-245 51-122 (166)
146 3lxw_A GTPase IMAP family memb 99.4 7.6E-13 2.6E-17 114.6 8.5 126 67-246 19-154 (247)
147 4dcu_A GTP-binding protein ENG 99.4 6.7E-13 2.3E-17 124.8 8.7 122 69-246 23-146 (456)
148 2bme_A RAB4A, RAS-related prot 99.4 8.4E-13 2.9E-17 107.6 8.0 73 166-247 59-131 (186)
149 1zbd_A Rabphilin-3A; G protein 99.4 3.9E-13 1.3E-17 111.6 6.0 70 166-247 57-129 (203)
150 1z08_A RAS-related protein RAB 99.4 2.2E-13 7.4E-18 109.3 4.1 71 167-246 56-126 (170)
151 3t34_A Dynamin-related protein 99.4 1.4E-12 5E-17 118.7 10.0 77 165-247 135-219 (360)
152 2atv_A RERG, RAS-like estrogen 99.4 3.2E-13 1.1E-17 111.8 5.0 71 166-246 76-147 (196)
153 1z6g_A Guanylate kinase; struc 99.4 1E-14 3.6E-19 124.1 -4.3 105 62-176 16-156 (218)
154 3e70_C DPA, signal recognition 99.4 7.5E-12 2.6E-16 113.0 14.0 156 66-244 126-281 (328)
155 1r2q_A RAS-related protein RAB 99.4 2.4E-12 8.4E-17 102.8 9.6 69 166-246 55-126 (170)
156 1m2o_B GTP-binding protein SAR 99.4 1.5E-12 5.1E-17 107.6 8.5 70 165-245 66-138 (190)
157 1tf7_A KAIC; homohexamer, hexa 99.4 1.4E-12 4.9E-17 124.6 9.6 135 65-207 277-417 (525)
158 1e69_A Chromosome segregation 99.4 6.7E-12 2.3E-16 112.7 13.4 36 144-179 216-255 (322)
159 1moz_A ARL1, ADP-ribosylation 99.4 8E-13 2.7E-17 107.5 6.6 70 165-246 61-134 (183)
160 2ew1_A RAS-related protein RAB 99.4 1.2E-12 4.2E-17 109.5 7.8 71 167-246 76-146 (201)
161 2x77_A ADP-ribosylation factor 99.4 7.6E-13 2.6E-17 108.6 6.4 71 165-246 65-138 (189)
162 2gf9_A RAS-related protein RAB 99.4 5.5E-13 1.9E-17 109.6 5.4 70 166-247 71-143 (189)
163 4bas_A ADP-ribosylation factor 99.4 1.1E-12 3.9E-17 108.0 7.3 118 66-246 14-142 (199)
164 2hup_A RAS-related protein RAB 99.4 1.1E-12 3.7E-17 109.4 7.2 69 166-246 78-149 (201)
165 3ihw_A Centg3; RAS, centaurin, 99.4 6.9E-12 2.4E-16 103.1 12.0 61 167-244 68-132 (184)
166 3tw8_B RAS-related protein RAB 99.3 1.9E-12 6.3E-17 104.7 8.4 70 166-247 58-129 (181)
167 2a5j_A RAS-related protein RAB 99.3 1.1E-12 3.7E-17 108.1 7.1 69 166-246 70-141 (191)
168 1ksh_A ARF-like protein 2; sma 99.3 1.3E-12 4.6E-17 106.7 7.5 116 67-246 16-134 (186)
169 3reg_A RHO-like small GTPase; 99.3 2.2E-13 7.6E-18 112.4 2.8 68 167-245 72-141 (194)
170 1f6b_A SAR1; gtpases, N-termin 99.3 8.8E-13 3E-17 109.8 6.4 70 165-245 68-140 (198)
171 2il1_A RAB12; G-protein, GDP, 99.3 1.6E-12 5.5E-17 107.4 7.8 73 166-247 75-147 (192)
172 2oil_A CATX-8, RAS-related pro 99.3 1.9E-12 6.4E-17 106.6 8.2 69 166-246 74-145 (193)
173 3con_A GTPase NRAS; structural 99.3 4.3E-13 1.5E-17 110.0 4.2 68 166-245 69-140 (190)
174 2f7s_A C25KG, RAS-related prot 99.3 1.1E-12 3.7E-17 110.1 6.8 70 166-247 84-157 (217)
175 2cxx_A Probable GTP-binding pr 99.3 2.5E-12 8.7E-17 105.0 8.7 81 167-247 45-138 (190)
176 3geh_A MNME, tRNA modification 99.3 1.3E-12 4.4E-17 123.1 7.9 126 66-249 221-348 (462)
177 2bcg_Y Protein YP2, GTP-bindin 99.3 1.8E-12 6.3E-17 107.8 7.9 69 167-247 58-129 (206)
178 1mky_A Probable GTP-binding pr 99.3 2E-12 6.7E-17 121.0 9.0 124 68-247 179-308 (439)
179 2qtf_A Protein HFLX, GTP-bindi 99.3 5E-12 1.7E-16 115.7 11.5 82 165-247 225-308 (364)
180 4gzl_A RAS-related C3 botulinu 99.3 3E-13 1E-17 113.1 3.0 71 167-248 79-151 (204)
181 2eyu_A Twitching motility prot 99.3 4E-12 1.4E-16 111.2 10.3 86 66-175 22-108 (261)
182 1g16_A RAS-related protein SEC 99.3 1.1E-12 3.7E-17 105.0 6.1 67 167-245 53-122 (170)
183 2hxs_A RAB-26, RAS-related pro 99.3 7.1E-13 2.4E-17 107.2 5.0 69 166-246 56-130 (178)
184 2p5s_A RAS and EF-hand domain 99.3 1.3E-12 4.6E-17 108.3 6.7 122 66-245 25-147 (199)
185 2fv8_A H6, RHO-related GTP-bin 99.3 6E-13 2.1E-17 111.3 4.6 71 166-247 73-145 (207)
186 2f9l_A RAB11B, member RAS onco 99.3 2.2E-12 7.7E-17 107.1 7.9 26 70-95 6-31 (199)
187 2gf0_A GTP-binding protein DI- 99.3 7.1E-13 2.4E-17 109.2 4.7 70 167-245 57-128 (199)
188 3p32_A Probable GTPase RV1496/ 99.3 7.2E-12 2.5E-16 114.1 11.8 153 67-248 77-234 (355)
189 2h57_A ADP-ribosylation factor 99.3 4.2E-12 1.4E-16 104.3 9.3 118 66-246 18-141 (190)
190 1oix_A RAS-related protein RAB 99.3 1.7E-12 5.7E-17 107.5 6.8 27 69-95 29-55 (191)
191 1ky3_A GTP-binding protein YPT 99.3 1.1E-11 3.7E-16 100.2 11.5 28 68-95 7-34 (182)
192 3c5c_A RAS-like protein 12; GD 99.3 1.3E-12 4.4E-17 107.6 5.9 68 166-246 69-142 (187)
193 1wms_A RAB-9, RAB9, RAS-relate 99.3 5.5E-12 1.9E-16 101.8 9.5 70 167-245 57-130 (177)
194 3cph_A RAS-related protein SEC 99.3 2.7E-12 9.3E-17 107.0 7.8 71 166-245 69-139 (213)
195 2aka_B Dynamin-1; fusion prote 99.3 1.7E-11 6E-16 107.9 13.4 78 165-247 124-208 (299)
196 4dcu_A GTP-binding protein ENG 99.3 1.7E-12 5.9E-17 122.0 7.2 126 67-246 193-321 (456)
197 2gco_A H9, RHO-related GTP-bin 99.3 6.2E-13 2.1E-17 110.7 3.7 69 167-246 74-144 (201)
198 2hjg_A GTP-binding protein ENG 99.3 1.2E-12 4.2E-17 122.3 6.1 126 68-247 174-302 (436)
199 1jwy_B Dynamin A GTPase domain 99.3 1E-11 3.6E-16 110.3 11.9 78 165-248 130-215 (315)
200 1x3s_A RAS-related protein RAB 99.3 4.1E-12 1.4E-16 104.2 8.5 68 166-245 64-135 (195)
201 3t5d_A Septin-7; GTP-binding p 99.3 4.9E-12 1.7E-16 110.9 9.4 78 167-250 66-163 (274)
202 2e87_A Hypothetical protein PH 99.3 4.3E-12 1.5E-16 115.6 9.2 127 67-249 165-298 (357)
203 2qag_A Septin-2, protein NEDD5 99.3 1.6E-12 5.3E-17 118.9 6.2 79 167-251 96-194 (361)
204 2zej_A Dardarin, leucine-rich 99.3 3.6E-12 1.2E-16 104.5 7.7 74 165-249 55-130 (184)
205 2xtp_A GTPase IMAP family memb 99.3 3.7E-12 1.3E-16 110.4 8.2 76 165-246 70-154 (260)
206 2o52_A RAS-related protein RAB 99.3 8.9E-13 3E-17 109.7 4.1 73 166-247 74-146 (200)
207 3def_A T7I23.11 protein; chlor 99.3 3.8E-12 1.3E-16 110.9 8.2 80 165-246 83-166 (262)
208 3q3j_B RHO-related GTP-binding 99.3 2.8E-12 9.5E-17 108.1 7.0 69 166-245 75-145 (214)
209 2fu5_C RAS-related protein RAB 99.3 2E-12 6.8E-17 105.3 5.9 69 166-246 57-128 (183)
210 1mh1_A RAC1; GTP-binding, GTPa 99.3 4.8E-13 1.6E-17 108.8 2.0 69 167-246 54-124 (186)
211 1h65_A Chloroplast outer envel 99.3 5.1E-12 1.7E-16 110.6 8.5 78 165-247 86-170 (270)
212 3th5_A RAS-related C3 botulinu 99.0 2.4E-13 8.2E-18 113.2 0.0 69 167-246 79-149 (204)
213 2j1l_A RHO-related GTP-binding 99.3 1.1E-12 3.7E-17 110.5 3.9 70 167-247 83-154 (214)
214 2atx_A Small GTP binding prote 99.3 1.4E-12 4.7E-17 107.5 4.3 70 166-246 66-137 (194)
215 2j0v_A RAC-like GTP-binding pr 99.3 9.6E-13 3.3E-17 110.1 3.4 70 167-247 58-129 (212)
216 2fh5_B SR-beta, signal recogni 99.3 1.9E-11 6.5E-16 102.2 11.4 121 68-247 6-131 (214)
217 3cpj_B GTP-binding protein YPT 99.3 4.1E-12 1.4E-16 107.5 7.2 69 166-246 62-133 (223)
218 3r7w_A Gtpase1, GTP-binding pr 99.3 3.9E-12 1.3E-16 113.6 7.4 77 166-246 52-130 (307)
219 2g3y_A GTP-binding protein GEM 99.3 3.6E-13 1.2E-17 114.1 0.5 26 68-93 36-61 (211)
220 3szr_A Interferon-induced GTP- 99.3 1.4E-12 4.9E-17 126.8 4.6 161 72-247 48-230 (608)
221 1rj9_A FTSY, signal recognitio 99.3 9.2E-11 3.1E-15 104.7 16.0 41 68-108 101-141 (304)
222 2yc2_C IFT27, small RAB-relate 99.3 1.9E-12 6.7E-17 107.2 4.7 67 167-245 74-146 (208)
223 1m7b_A RND3/RHOE small GTP-bin 99.3 4.8E-12 1.6E-16 103.6 6.9 69 166-245 55-125 (184)
224 1xzp_A Probable tRNA modificat 99.3 9.1E-13 3.1E-17 124.7 2.5 123 66-246 240-365 (482)
225 2x2e_A Dynamin-1; nitration, h 99.3 1.2E-11 4.2E-16 112.4 9.9 78 165-247 129-213 (353)
226 3sjy_A Translation initiation 99.3 5.8E-11 2E-15 109.8 14.3 72 166-250 75-148 (403)
227 2q3h_A RAS homolog gene family 99.3 2.4E-12 8.3E-17 106.6 4.3 68 167-245 69-138 (201)
228 3l0i_B RAS-related protein RAB 99.3 1.6E-12 5.4E-17 107.9 3.2 71 166-248 82-155 (199)
229 1vg8_A RAS-related protein RAB 99.3 4.8E-12 1.6E-16 105.0 6.2 27 68-94 7-33 (207)
230 2v9p_A Replication protein E1; 99.3 6.9E-13 2.3E-17 118.5 0.8 99 65-176 122-224 (305)
231 3tr5_A RF-3, peptide chain rel 99.2 3.5E-11 1.2E-15 115.1 12.3 69 165-246 81-149 (528)
232 3o47_A ADP-ribosylation factor 99.2 7.2E-12 2.4E-16 113.0 7.2 117 67-247 163-282 (329)
233 1gwn_A RHO-related GTP-binding 99.2 8.4E-12 2.9E-16 104.6 6.8 69 166-245 76-146 (205)
234 2yhs_A FTSY, cell division pro 99.2 7.9E-11 2.7E-15 111.2 14.1 161 63-244 287-451 (503)
235 3qq5_A Small GTP-binding prote 99.2 5E-12 1.7E-16 117.8 5.9 73 167-248 84-157 (423)
236 1nlf_A Regulatory protein REPA 99.2 2.1E-11 7.3E-16 107.0 9.6 106 66-176 27-144 (279)
237 3kl4_A SRP54, signal recogniti 99.2 6.9E-11 2.4E-15 110.2 13.2 158 67-245 95-252 (433)
238 2i3b_A HCR-ntpase, human cance 99.2 4.4E-13 1.5E-17 111.8 -1.5 123 69-195 1-134 (189)
239 2qag_C Septin-7; cell cycle, c 99.2 2.5E-11 8.5E-16 112.9 9.9 29 70-98 32-60 (418)
240 1ls1_A Signal recognition part 99.2 2E-10 7E-15 102.0 15.1 154 68-245 97-251 (295)
241 1wb1_A Translation elongation 99.2 4.2E-11 1.4E-15 113.4 10.8 71 165-248 72-142 (482)
242 1lnz_A SPO0B-associated GTP-bi 99.2 2.2E-11 7.5E-16 110.5 8.4 78 166-248 206-291 (342)
243 4a74_A DNA repair and recombin 99.2 6.7E-11 2.3E-15 99.8 10.8 98 66-177 22-137 (231)
244 2cjw_A GTP-binding protein GEM 99.2 1.7E-12 5.7E-17 107.7 0.7 24 70-93 7-30 (192)
245 2iwr_A Centaurin gamma 1; ANK 99.2 2E-11 7E-16 98.8 7.0 26 69-94 7-32 (178)
246 3j2k_7 ERF3, eukaryotic polype 99.2 4.5E-11 1.5E-15 111.9 10.2 73 165-245 94-169 (439)
247 2c78_A Elongation factor TU-A; 99.2 9.2E-11 3.1E-15 108.5 12.0 68 165-245 74-142 (405)
248 3lvq_E ARF-GAP with SH3 domain 99.2 3E-11 1E-15 114.4 8.8 116 67-246 320-438 (497)
249 2qpt_A EH domain-containing pr 99.2 5.6E-11 1.9E-15 114.3 10.6 80 167-253 155-240 (550)
250 3r7w_B Gtpase2, GTP-binding pr 99.2 8.5E-11 2.9E-15 105.8 10.7 87 166-260 46-142 (331)
251 1d2e_A Elongation factor TU (E 99.2 5E-11 1.7E-15 110.0 9.1 68 165-245 65-133 (397)
252 2h5e_A Peptide chain release f 99.2 6.3E-11 2.1E-15 113.4 9.9 70 165-247 81-150 (529)
253 2px0_A Flagellar biosynthesis 99.2 1.6E-10 5.5E-15 102.7 11.9 151 66-245 102-253 (296)
254 3zvr_A Dynamin-1; hydrolase, D 99.2 1E-10 3.5E-15 115.7 11.4 79 165-248 149-234 (772)
255 2dy1_A Elongation factor G; tr 99.2 7.1E-11 2.4E-15 115.9 10.2 132 66-244 6-139 (665)
256 3gj0_A GTP-binding nuclear pro 99.2 8.1E-12 2.8E-16 105.3 2.9 69 166-246 64-134 (221)
257 3p26_A Elongation factor 1 alp 99.2 1.1E-10 3.7E-15 110.5 11.0 73 165-245 110-185 (483)
258 2ehv_A Hypothetical protein PH 99.2 2E-10 6.7E-15 98.1 11.6 41 66-106 27-69 (251)
259 3qkt_A DNA double-strand break 99.2 3E-10 1E-14 102.6 13.4 63 144-206 245-313 (339)
260 3thx_B DNA mismatch repair pro 99.2 6.7E-11 2.3E-15 119.4 9.8 126 65-207 669-796 (918)
261 3dpu_A RAB family protein; roc 99.2 5.6E-11 1.9E-15 113.7 8.8 69 165-248 97-167 (535)
262 2xex_A Elongation factor G; GT 99.2 8.8E-11 3E-15 115.8 10.3 69 165-246 74-142 (693)
263 2qnr_A Septin-2, protein NEDD5 99.2 8.7E-11 3E-15 104.6 9.1 35 70-105 19-54 (301)
264 2j69_A Bacterial dynamin-like 99.1 1.4E-10 4.7E-15 114.4 11.2 72 166-246 174-245 (695)
265 1zo1_I IF2, translation initia 99.1 6E-11 2.1E-15 112.6 8.3 69 165-246 50-118 (501)
266 2qag_B Septin-6, protein NEDD5 99.1 5E-11 1.7E-15 110.9 7.5 48 200-253 151-198 (427)
267 3thx_A DNA mismatch repair pro 99.1 1.5E-10 5.2E-15 117.0 11.4 114 66-206 659-784 (934)
268 3izy_P Translation initiation 99.1 1.5E-11 5.2E-16 117.6 3.8 69 165-246 51-119 (537)
269 1cr0_A DNA primase/helicase; R 99.1 3.2E-10 1.1E-14 100.1 12.1 107 66-177 32-159 (296)
270 2elf_A Protein translation elo 99.1 1.9E-10 6.4E-15 105.4 10.9 69 165-248 59-129 (370)
271 1g7s_A Translation initiation 99.1 1.1E-10 3.8E-15 113.1 9.7 68 165-245 69-136 (594)
272 3dm5_A SRP54, signal recogniti 99.1 9.7E-10 3.3E-14 102.6 15.4 156 68-246 99-254 (443)
273 1ewq_A DNA mismatch repair pro 99.1 9.9E-11 3.4E-15 116.3 9.0 118 69-206 576-697 (765)
274 3jvv_A Twitching mobility prot 99.1 1.7E-10 5.7E-15 105.2 9.6 86 66-175 120-206 (356)
275 2jeo_A Uridine-cytidine kinase 99.1 6.2E-12 2.1E-16 108.4 0.1 109 62-176 18-144 (245)
276 4a9a_A Ribosome-interacting GT 99.1 7.2E-11 2.5E-15 108.2 7.1 119 70-243 73-194 (376)
277 1udx_A The GTP-binding protein 99.1 2.4E-10 8.3E-15 106.1 10.6 127 66-246 154-284 (416)
278 1zun_B Sulfate adenylate trans 99.1 4.4E-10 1.5E-14 104.9 12.2 68 165-245 103-171 (434)
279 1dar_A EF-G, elongation factor 99.1 2.5E-10 8.7E-15 112.5 11.0 70 165-247 76-145 (691)
280 2wkq_A NPH1-1, RAS-related C3 99.1 1.8E-11 6E-16 109.0 2.4 69 167-246 204-274 (332)
281 3izq_1 HBS1P, elongation facto 99.1 2.1E-10 7E-15 111.6 9.8 68 165-245 244-319 (611)
282 2w0m_A SSO2452; RECA, SSPF, un 99.1 6.9E-10 2.4E-14 93.4 11.9 98 66-177 20-135 (235)
283 1s0u_A EIF-2-gamma, translatio 99.1 3.3E-10 1.1E-14 104.9 10.1 68 166-247 81-151 (408)
284 2o8b_B DNA mismatch repair pro 99.1 6.4E-11 2.2E-15 120.9 5.8 121 69-207 789-912 (1022)
285 1j8m_F SRP54, signal recogniti 99.1 1.8E-09 6.2E-14 96.0 14.4 156 69-246 98-254 (297)
286 3j25_A Tetracycline resistance 99.1 1.7E-10 5.9E-15 112.7 8.4 71 164-247 65-135 (638)
287 1f60_A Elongation factor EEF1A 99.1 4.7E-10 1.6E-14 105.5 10.9 73 165-245 84-159 (458)
288 3asz_A Uridine kinase; cytidin 99.1 9.2E-13 3.1E-17 110.6 -6.8 106 66-175 3-121 (211)
289 3vqt_A RF-3, peptide chain rel 99.1 1.6E-10 5.3E-15 111.1 7.5 71 164-247 98-168 (548)
290 1pzn_A RAD51, DNA repair and r 99.1 9.3E-10 3.2E-14 100.0 12.1 100 66-178 128-244 (349)
291 1kk1_A EIF2gamma; initiation o 99.1 1.8E-10 6.2E-15 106.7 7.3 70 166-248 83-154 (410)
292 1jny_A EF-1-alpha, elongation 99.1 1E-09 3.4E-14 102.5 12.2 73 165-245 83-158 (435)
293 1nij_A Hypothetical protein YJ 99.0 4.6E-10 1.6E-14 100.6 8.8 148 69-246 4-165 (318)
294 2j37_W Signal recognition part 99.0 1E-09 3.4E-14 104.3 11.6 155 67-246 99-255 (504)
295 3mca_A HBS1, elongation factor 99.0 5.6E-11 1.9E-15 115.2 3.0 68 165-245 254-329 (592)
296 2rdo_7 EF-G, elongation factor 99.0 9.3E-10 3.2E-14 108.6 11.7 69 166-247 82-150 (704)
297 2ywe_A GTP-binding protein LEP 99.0 1.1E-09 3.8E-14 106.0 11.9 68 166-246 73-140 (600)
298 1zu4_A FTSY; GTPase, signal re 99.0 2.8E-09 9.7E-14 95.7 13.6 157 65-245 101-268 (320)
299 3cb4_D GTP-binding protein LEP 99.0 4.7E-10 1.6E-14 108.7 8.6 68 166-246 71-138 (599)
300 1znw_A Guanylate kinase, GMP k 99.0 1.7E-12 5.7E-17 109.2 -8.0 30 65-94 16-45 (207)
301 3avx_A Elongation factor TS, e 99.0 1.3E-09 4.5E-14 111.4 11.1 68 165-245 358-426 (1289)
302 4fn5_A EF-G 1, elongation fact 99.0 4.4E-10 1.5E-14 111.1 7.5 70 165-247 84-153 (709)
303 2ffh_A Protein (FFH); SRP54, s 99.0 7.5E-09 2.6E-13 96.3 14.5 153 68-245 97-251 (425)
304 1r5b_A Eukaryotic peptide chai 99.0 6.6E-10 2.2E-14 104.7 7.5 70 165-245 120-195 (467)
305 1wxq_A GTP-binding protein; st 99.0 1.4E-09 4.7E-14 100.6 9.4 23 71-93 2-24 (397)
306 2f1r_A Molybdopterin-guanine d 99.0 3.9E-12 1.3E-16 104.5 -7.1 95 70-168 3-124 (171)
307 2v3c_C SRP54, signal recogniti 99.0 1.3E-09 4.3E-14 101.8 8.9 152 68-246 98-253 (432)
308 3c5h_A Glucocorticoid receptor 99.0 4.9E-09 1.7E-13 90.8 12.0 26 66-91 16-50 (255)
309 2wsm_A Hydrogenase expression/ 99.0 1.3E-09 4.5E-14 91.5 7.9 137 68-246 29-169 (221)
310 2cvh_A DNA repair and recombin 98.9 3.6E-09 1.2E-13 88.5 9.5 98 66-178 17-118 (220)
311 3c8u_A Fructokinase; YP_612366 98.9 2E-11 6.8E-16 102.6 -4.4 111 66-176 19-141 (208)
312 2rcn_A Probable GTPase ENGC; Y 98.9 3.7E-10 1.3E-14 102.9 3.4 94 66-162 212-328 (358)
313 2ewv_A Twitching motility prot 98.9 1.5E-09 5.2E-14 99.4 7.1 86 66-175 133-219 (372)
314 1n0u_A EF-2, elongation factor 98.9 1.5E-09 5.2E-14 109.1 7.2 66 166-244 98-163 (842)
315 1zp6_A Hypothetical protein AT 98.9 5.2E-10 1.8E-14 91.9 2.9 39 66-106 6-44 (191)
316 1wb9_A DNA mismatch repair pro 98.9 4.1E-09 1.4E-13 105.3 9.8 123 67-207 605-730 (800)
317 2gza_A Type IV secretion syste 98.9 6.4E-09 2.2E-13 94.8 9.6 92 65-176 171-263 (361)
318 1lw7_A Transcriptional regulat 98.9 4.2E-10 1.4E-14 102.6 1.7 111 63-173 162-285 (365)
319 2kjq_A DNAA-related protein; s 98.9 8.1E-09 2.8E-13 82.5 9.0 38 68-106 35-74 (149)
320 3h2y_A GTPase family protein; 98.9 5.3E-10 1.8E-14 102.3 2.3 130 68-249 159-291 (368)
321 1odf_A YGR205W, hypothetical 3 98.9 2.9E-10 1E-14 100.8 0.1 110 66-176 28-163 (290)
322 2dpy_A FLII, flagellum-specifi 98.8 6E-09 2.1E-13 97.4 9.0 42 64-105 152-193 (438)
323 3ec1_A YQEH GTPase; atnos1, at 98.8 2.7E-10 9.2E-15 104.3 -0.4 128 68-247 161-290 (369)
324 1htw_A HI0065; nucleotide-bind 98.8 1.2E-09 4.2E-14 88.3 3.1 42 65-107 29-70 (158)
325 2obl_A ESCN; ATPase, hydrolase 98.8 2.6E-09 9E-14 97.0 4.7 42 65-106 67-108 (347)
326 1tf7_A KAIC; homohexamer, hexa 98.8 9.9E-09 3.4E-13 98.0 8.8 41 66-106 36-78 (525)
327 2hf9_A Probable hydrogenase ni 98.8 1.2E-08 4E-13 85.9 7.1 29 68-96 37-65 (226)
328 1n0w_A DNA repair protein RAD5 98.8 5.8E-08 2E-12 82.3 11.5 99 66-178 21-132 (243)
329 2dby_A GTP-binding protein; GD 98.7 8.8E-08 3E-12 87.5 13.0 23 71-93 3-25 (368)
330 1f2t_B RAD50 ABC-ATPase; DNA d 98.7 2.8E-08 9.6E-13 79.4 7.5 64 144-207 54-123 (148)
331 2xxa_A Signal recognition part 98.7 4E-07 1.4E-11 84.9 16.4 155 67-245 98-254 (433)
332 3ec2_A DNA replication protein 98.7 8.4E-09 2.9E-13 84.2 3.9 33 66-98 35-67 (180)
333 1ni3_A YCHF GTPase, YCHF GTP-b 98.7 6.8E-08 2.3E-12 89.0 9.7 28 66-93 17-44 (392)
334 1jal_A YCHF protein; nucleotid 98.6 5E-08 1.7E-12 88.9 7.4 25 69-93 2-26 (363)
335 2ohf_A Protein OLA1, GTP-bindi 98.6 6.8E-08 2.3E-12 88.9 7.5 28 66-93 19-46 (396)
336 1s96_A Guanylate kinase, GMP k 98.5 3.3E-08 1.1E-12 84.0 3.5 42 66-107 13-56 (219)
337 3lda_A DNA repair protein RAD5 98.5 3.1E-07 1E-11 84.8 9.6 99 66-178 175-286 (400)
338 1t9h_A YLOQ, probable GTPase E 98.5 2.9E-08 9.9E-13 88.6 2.6 38 65-102 169-206 (307)
339 4a1f_A DNAB helicase, replicat 98.5 1.4E-06 4.8E-11 78.7 13.1 152 66-238 43-203 (338)
340 3pih_A Uvrabc system protein A 98.5 3.7E-07 1.3E-11 92.2 10.0 121 85-206 384-525 (916)
341 3euj_A Chromosome partition pr 98.5 3.9E-08 1.3E-12 92.8 2.1 44 63-107 24-67 (483)
342 1knq_A Gluconate kinase; ALFA/ 98.5 1.6E-06 5.5E-11 69.9 11.2 37 67-107 6-42 (175)
343 4eun_A Thermoresistant glucoki 98.4 1E-06 3.5E-11 73.0 10.3 38 66-107 26-63 (200)
344 1sxj_E Activator 1 40 kDa subu 98.4 1.1E-06 3.8E-11 78.7 9.7 35 72-106 39-74 (354)
345 1sq5_A Pantothenate kinase; P- 98.4 2.1E-07 7.1E-12 82.8 4.7 36 67-102 78-115 (308)
346 3uie_A Adenylyl-sulfate kinase 98.4 1.2E-07 4E-12 78.8 2.7 41 66-107 22-64 (200)
347 1u0l_A Probable GTPase ENGC; p 98.4 1.6E-07 5.3E-12 83.4 3.6 42 66-107 166-210 (301)
348 1lvg_A Guanylate kinase, GMP k 98.4 1.4E-07 4.6E-12 78.6 2.6 27 68-94 3-29 (198)
349 2r6f_A Excinuclease ABC subuni 98.3 1.3E-06 4.3E-11 88.2 9.9 77 129-206 487-565 (972)
350 3a00_A Guanylate kinase, GMP k 98.3 1.7E-07 5.8E-12 77.0 2.9 28 69-96 1-28 (186)
351 3kta_B Chromosome segregation 98.3 1.5E-06 5E-11 71.2 8.1 36 144-179 61-100 (173)
352 1p9r_A General secretion pathw 98.3 3.2E-07 1.1E-11 85.2 4.6 42 66-107 164-205 (418)
353 2x8a_A Nuclear valosin-contain 98.3 6.4E-07 2.2E-11 78.4 6.2 38 66-107 43-80 (274)
354 2vf7_A UVRA2, excinuclease ABC 98.3 1.6E-06 5.5E-11 86.8 9.8 77 129-206 362-440 (842)
355 3tr0_A Guanylate kinase, GMP k 98.3 2.9E-07 1E-11 76.0 3.7 29 66-94 4-32 (205)
356 3lnc_A Guanylate kinase, GMP k 98.3 2.1E-07 7E-12 79.0 2.2 35 61-95 19-54 (231)
357 2ygr_A Uvrabc system protein A 98.3 1.4E-06 4.8E-11 88.2 8.4 66 129-195 504-571 (993)
358 2oap_1 GSPE-2, type II secreti 98.3 5.1E-07 1.7E-11 85.9 4.6 41 66-106 257-297 (511)
359 2bdt_A BH3686; alpha-beta prot 98.2 4.7E-07 1.6E-11 74.1 3.3 36 69-107 2-37 (189)
360 2yv5_A YJEQ protein; hydrolase 98.2 5.5E-07 1.9E-11 80.0 3.6 41 66-107 162-205 (302)
361 3bh0_A DNAB-like replicative h 98.2 1.9E-05 6.5E-10 70.3 13.4 97 66-176 65-162 (315)
362 1kgd_A CASK, peripheral plasma 98.2 6.6E-07 2.3E-11 73.1 3.6 35 68-102 4-39 (180)
363 1zcb_A G alpha I/13; GTP-bindi 98.2 1.7E-06 5.9E-11 78.8 6.1 70 166-244 201-281 (362)
364 2j41_A Guanylate kinase; GMP, 98.2 1.1E-06 3.8E-11 72.5 4.1 33 66-98 3-35 (207)
365 1rz3_A Hypothetical protein rb 98.2 1E-06 3.5E-11 73.2 3.8 42 66-107 19-60 (201)
366 1qhl_A Protein (cell division 98.1 7.6E-08 2.6E-12 82.3 -3.7 38 70-107 28-65 (227)
367 4dzz_A Plasmid partitioning pr 98.1 7.8E-06 2.7E-10 67.3 8.4 135 71-244 3-143 (206)
368 2dr3_A UPF0273 protein PH0284; 98.1 4.3E-05 1.5E-09 64.4 13.0 39 66-104 20-59 (247)
369 2r6a_A DNAB helicase, replicat 98.1 7.8E-06 2.7E-10 76.4 8.6 109 66-178 200-326 (454)
370 4e22_A Cytidylate kinase; P-lo 98.1 5.2E-07 1.8E-11 77.9 0.4 35 67-101 25-62 (252)
371 2bbw_A Adenylate kinase 4, AK4 98.1 9.2E-07 3.1E-11 75.7 1.8 37 68-104 26-65 (246)
372 2vp4_A Deoxynucleoside kinase; 98.1 2.2E-06 7.7E-11 72.7 4.1 37 66-106 17-53 (230)
373 3tau_A Guanylate kinase, GMP k 98.0 2.6E-06 9E-11 71.1 4.0 29 67-95 6-34 (208)
374 2zr9_A Protein RECA, recombina 98.0 3.2E-05 1.1E-09 70.0 11.4 93 66-178 58-152 (349)
375 1puj_A YLQF, conserved hypothe 98.0 6.9E-06 2.4E-10 72.2 6.0 29 67-95 118-146 (282)
376 4fid_A G protein alpha subunit 98.0 3.3E-05 1.1E-09 69.7 10.0 73 165-246 160-243 (340)
377 3k1j_A LON protease, ATP-depen 98.0 4.6E-06 1.6E-10 80.8 4.6 41 66-106 57-98 (604)
378 3tqc_A Pantothenate kinase; bi 97.9 5.9E-06 2E-10 74.0 4.6 40 67-106 90-131 (321)
379 4ad8_A DNA repair protein RECN 97.9 5E-06 1.7E-10 79.1 4.4 61 145-206 394-457 (517)
380 3bfv_A CAPA1, CAPB2, membrane 97.9 5.3E-05 1.8E-09 66.0 10.6 162 67-245 80-258 (271)
381 3cio_A ETK, tyrosine-protein k 97.9 3.2E-05 1.1E-09 68.4 9.3 162 67-245 102-280 (299)
382 2yvu_A Probable adenylyl-sulfa 97.9 9E-05 3.1E-09 60.2 11.4 37 66-102 10-46 (186)
383 3kjh_A CO dehydrogenase/acetyl 97.9 8E-05 2.7E-09 62.8 11.2 38 71-108 2-39 (254)
384 1ixz_A ATP-dependent metallopr 97.9 1.5E-05 5E-10 68.2 6.4 36 66-105 48-83 (254)
385 3kta_A Chromosome segregation 97.9 8.5E-06 2.9E-10 66.0 4.2 30 66-96 24-53 (182)
386 3hr8_A Protein RECA; alpha and 97.9 9.1E-05 3.1E-09 67.2 11.3 39 66-104 58-97 (356)
387 1f5n_A Interferon-induced guan 97.9 2.6E-05 9E-10 75.2 8.1 26 68-93 37-62 (592)
388 1iy2_A ATP-dependent metallopr 97.9 2.1E-05 7.1E-10 68.4 6.6 36 66-105 72-107 (278)
389 3la6_A Tyrosine-protein kinase 97.9 7.4E-05 2.5E-09 65.7 10.1 162 67-246 90-269 (286)
390 3end_A Light-independent proto 97.9 0.00018 6.2E-09 63.2 12.7 43 66-108 38-80 (307)
391 3ney_A 55 kDa erythrocyte memb 97.8 8.1E-06 2.8E-10 68.1 3.6 29 66-94 16-44 (197)
392 3cnl_A YLQF, putative uncharac 97.8 1.1E-05 3.7E-10 70.2 4.3 26 70-95 100-125 (262)
393 1kag_A SKI, shikimate kinase I 97.8 8E-06 2.7E-10 65.5 3.1 27 69-95 4-30 (173)
394 2q6t_A DNAB replication FORK h 97.8 0.00073 2.5E-08 62.8 16.8 95 66-176 197-293 (444)
395 2ce7_A Cell division protein F 97.8 3.5E-05 1.2E-09 72.6 7.7 68 72-176 52-119 (476)
396 3cr8_A Sulfate adenylyltranfer 97.8 7.4E-06 2.5E-10 78.6 2.9 40 66-105 366-407 (552)
397 1w1w_A Structural maintenance 97.8 3.5E-05 1.2E-09 71.4 7.0 35 145-179 331-369 (430)
398 3ea0_A ATPase, para family; al 97.8 0.00037 1.3E-08 58.7 12.7 161 68-245 3-186 (245)
399 3bgw_A DNAB-like replicative h 97.7 0.00055 1.9E-08 63.8 14.6 153 66-238 194-357 (444)
400 2o5v_A DNA replication and rep 97.7 3E-05 1E-09 70.5 5.7 36 144-179 261-306 (359)
401 2qt1_A Nicotinamide riboside k 97.7 3.3E-05 1.1E-09 63.9 5.5 38 66-106 18-55 (207)
402 3b9p_A CG5977-PA, isoform A; A 97.7 0.00013 4.4E-09 63.6 8.8 26 68-93 53-78 (297)
403 2ius_A DNA translocase FTSK; n 97.7 6.3E-06 2.2E-10 78.2 0.1 45 64-108 162-208 (512)
404 2pez_A Bifunctional 3'-phospho 97.7 2.6E-05 8.8E-10 63.1 3.7 29 67-95 3-31 (179)
405 3q5d_A Atlastin-1; G protein, 97.7 5.6E-05 1.9E-09 70.6 6.3 26 68-93 66-91 (447)
406 1cke_A CK, MSSA, protein (cyti 97.6 1.9E-05 6.4E-10 66.1 2.7 34 69-102 5-41 (227)
407 3auy_A DNA double-strand break 97.6 9.5E-05 3.2E-09 67.2 6.9 35 144-178 277-318 (371)
408 1m7g_A Adenylylsulfate kinase; 97.6 3E-05 1E-09 64.6 3.3 39 66-104 22-62 (211)
409 1v5w_A DMC1, meiotic recombina 97.6 0.00041 1.4E-08 62.3 10.8 27 66-92 119-145 (343)
410 2qby_A CDC6 homolog 1, cell di 97.6 0.00025 8.4E-09 63.4 9.3 29 67-95 43-71 (386)
411 3m6a_A ATP-dependent protease 97.6 3.9E-05 1.3E-09 73.4 4.2 36 68-103 107-142 (543)
412 2ph1_A Nucleotide-binding prot 97.6 0.001 3.6E-08 57.0 12.9 41 69-109 18-59 (262)
413 3q9l_A Septum site-determining 97.6 0.00033 1.1E-08 59.5 9.6 40 70-109 3-43 (260)
414 3vaa_A Shikimate kinase, SK; s 97.6 3.5E-05 1.2E-09 63.6 3.3 31 63-93 19-49 (199)
415 2p5t_B PEZT; postsegregational 97.6 0.00042 1.4E-08 59.4 10.1 37 66-104 29-65 (253)
416 1hyq_A MIND, cell division inh 97.6 0.00083 2.9E-08 57.3 12.0 38 71-108 4-42 (263)
417 3cwq_A Para family chromosome 97.6 0.0013 4.6E-08 54.5 13.0 129 72-245 3-134 (209)
418 2dhr_A FTSH; AAA+ protein, hex 97.6 0.00012 4.2E-09 69.2 7.2 73 26-107 28-100 (499)
419 1fnn_A CDC6P, cell division co 97.5 0.0009 3.1E-08 60.0 12.6 26 71-96 46-71 (389)
420 3k9g_A PF-32 protein; ssgcid, 97.5 0.00098 3.3E-08 57.1 12.3 41 67-108 25-66 (267)
421 2xau_A PRE-mRNA-splicing facto 97.5 0.00018 6.3E-09 71.5 8.4 99 66-176 106-219 (773)
422 2qor_A Guanylate kinase; phosp 97.5 4.9E-05 1.7E-09 62.9 2.9 29 66-94 9-37 (204)
423 1w1w_A Structural maintenance 97.5 6.1E-05 2.1E-09 69.7 3.8 32 66-97 23-54 (430)
424 2z43_A DNA repair and recombin 97.5 0.00064 2.2E-08 60.5 10.3 98 66-177 104-215 (324)
425 3bos_A Putative DNA replicatio 97.5 0.00038 1.3E-08 57.9 8.3 29 68-96 51-79 (242)
426 1cp2_A CP2, nitrogenase iron p 97.5 0.0022 7.6E-08 54.8 13.3 39 71-109 3-41 (269)
427 2oze_A ORF delta'; para, walke 97.4 0.0012 4.1E-08 57.5 11.6 40 69-108 34-76 (298)
428 1jjv_A Dephospho-COA kinase; P 97.4 7.1E-05 2.4E-09 61.8 3.3 22 70-91 3-24 (206)
429 3t61_A Gluconokinase; PSI-biol 97.4 6.9E-05 2.4E-09 61.7 3.0 26 68-93 17-42 (202)
430 1ypw_A Transitional endoplasmi 97.4 0.00048 1.6E-08 68.9 9.5 65 25-95 200-264 (806)
431 1in4_A RUVB, holliday junction 97.4 2.3E-05 7.9E-10 70.2 -0.1 24 70-93 52-75 (334)
432 1f2t_A RAD50 ABC-ATPase; DNA d 97.4 0.0001 3.5E-09 58.4 3.6 24 69-92 23-46 (149)
433 2if2_A Dephospho-COA kinase; a 97.4 8.8E-05 3E-09 61.0 3.4 21 71-91 3-23 (204)
434 1np6_A Molybdopterin-guanine d 97.4 0.0001 3.5E-09 60.1 3.4 29 69-97 6-34 (174)
435 4eaq_A DTMP kinase, thymidylat 97.4 0.00016 5.4E-09 61.4 4.7 36 66-102 23-58 (229)
436 1svm_A Large T antigen; AAA+ f 97.3 0.00011 3.8E-09 67.2 3.7 35 65-102 165-199 (377)
437 2o5v_A DNA replication and rep 97.3 0.00014 4.9E-09 66.0 4.4 26 65-91 23-48 (359)
438 1wcv_1 SOJ, segregation protei 97.3 0.002 7E-08 54.9 11.3 40 68-107 5-45 (257)
439 1lv7_A FTSH; alpha/beta domain 97.3 0.00096 3.3E-08 56.8 8.7 24 71-94 47-70 (257)
440 3h4m_A Proteasome-activating n 97.2 0.00098 3.4E-08 57.5 8.6 27 67-93 49-75 (285)
441 3cm0_A Adenylate kinase; ATP-b 97.2 0.00015 5E-09 58.6 3.1 26 68-93 3-28 (186)
442 2z4s_A Chromosomal replication 97.2 0.0014 4.7E-08 61.0 9.8 26 69-94 130-155 (440)
443 1qhx_A CPT, protein (chloramph 97.2 0.00021 7E-09 57.3 3.6 26 69-94 3-28 (178)
444 2r8r_A Sensor protein; KDPD, P 97.2 0.0002 6.9E-09 60.8 3.6 36 71-106 8-43 (228)
445 3kb2_A SPBC2 prophage-derived 97.2 0.0002 6.7E-09 56.8 3.2 23 71-93 3-25 (173)
446 3cf0_A Transitional endoplasmi 97.2 0.00023 7.9E-09 62.6 4.0 29 66-94 46-74 (301)
447 1xwi_A SKD1 protein; VPS4B, AA 97.2 0.0027 9.1E-08 56.4 10.9 61 25-93 8-69 (322)
448 1u94_A RECA protein, recombina 97.2 0.0029 9.9E-08 57.2 11.2 92 66-178 60-154 (356)
449 3nwj_A ATSK2; P loop, shikimat 97.2 0.00018 6.2E-09 62.0 3.0 28 66-93 42-72 (250)
450 1y63_A LMAJ004144AAA protein; 97.1 0.00026 8.8E-09 57.6 3.7 27 66-92 7-33 (184)
451 1xjc_A MOBB protein homolog; s 97.1 0.00027 9.1E-09 57.4 3.6 35 70-104 5-39 (169)
452 2rhm_A Putative kinase; P-loop 97.1 0.0003 1E-08 57.0 3.9 27 67-93 3-29 (193)
453 4fcw_A Chaperone protein CLPB; 97.1 0.00094 3.2E-08 58.2 7.4 35 68-102 46-80 (311)
454 1kht_A Adenylate kinase; phosp 97.1 0.00027 9.1E-09 57.1 3.4 26 69-94 3-28 (192)
455 2xj4_A MIPZ; replication, cell 97.1 0.0014 4.8E-08 57.1 8.2 38 70-107 5-43 (286)
456 3zvl_A Bifunctional polynucleo 97.1 0.0026 8.9E-08 58.6 10.2 28 66-93 255-282 (416)
457 1gtv_A TMK, thymidylate kinase 97.1 0.00014 4.8E-09 60.0 1.4 31 71-101 2-32 (214)
458 2afh_E Nitrogenase iron protei 97.1 0.0046 1.6E-07 53.6 11.2 40 70-109 3-42 (289)
459 1xp8_A RECA protein, recombina 97.1 0.0065 2.2E-07 55.1 12.5 93 66-178 71-165 (366)
460 3qks_A DNA double-strand break 97.1 0.00034 1.2E-08 58.1 3.6 25 69-93 23-47 (203)
461 3fkq_A NTRC-like two-domain pr 97.1 0.0052 1.8E-07 55.6 11.8 41 66-106 140-181 (373)
462 3lw7_A Adenylate kinase relate 97.1 0.00029 1E-08 55.6 3.1 20 70-89 2-21 (179)
463 2v54_A DTMP kinase, thymidylat 97.1 0.00038 1.3E-08 56.9 3.8 26 68-93 3-28 (204)
464 4b4t_L 26S protease subunit RP 97.0 0.0014 4.9E-08 60.9 8.1 66 23-95 175-241 (437)
465 1l8q_A Chromosomal replication 97.0 0.0022 7.4E-08 56.6 9.0 27 69-95 37-63 (324)
466 3syl_A Protein CBBX; photosynt 97.0 0.0025 8.4E-08 55.5 9.2 28 67-94 65-92 (309)
467 1g3q_A MIND ATPase, cell divis 97.0 0.0011 3.9E-08 55.4 6.7 39 70-108 3-42 (237)
468 4b4t_M 26S protease regulatory 97.0 0.0014 4.9E-08 60.8 7.9 68 22-95 174-241 (434)
469 1ex7_A Guanylate kinase; subst 97.0 0.00031 1.1E-08 57.9 3.0 22 72-93 4-25 (186)
470 1ly1_A Polynucleotide kinase; 97.0 0.00039 1.3E-08 55.5 3.5 22 70-91 3-24 (181)
471 2v1u_A Cell division control p 97.0 0.0024 8.1E-08 57.0 8.9 28 68-95 43-70 (387)
472 2plr_A DTMP kinase, probable t 97.0 0.00045 1.5E-08 56.6 3.7 28 68-95 3-30 (213)
473 2wwf_A Thymidilate kinase, put 97.0 0.00048 1.6E-08 56.7 3.7 27 67-93 8-34 (212)
474 1vht_A Dephospho-COA kinase; s 97.0 0.00048 1.6E-08 57.2 3.8 24 68-91 3-26 (218)
475 2c95_A Adenylate kinase 1; tra 97.0 0.00048 1.6E-08 55.9 3.7 27 67-93 7-33 (196)
476 1ihu_A Arsenical pump-driving 97.0 0.0096 3.3E-07 57.1 13.3 41 67-107 6-46 (589)
477 1q57_A DNA primase/helicase; d 97.0 0.016 5.4E-07 54.5 14.6 30 66-95 239-268 (503)
478 1q3t_A Cytidylate kinase; nucl 97.0 0.00048 1.6E-08 58.2 3.7 28 66-93 13-40 (236)
479 1nn5_A Similar to deoxythymidy 97.0 0.00051 1.7E-08 56.5 3.8 28 67-94 7-34 (215)
480 1njg_A DNA polymerase III subu 96.9 0.01 3.5E-07 48.6 11.6 26 70-95 46-71 (250)
481 1uf9_A TT1252 protein; P-loop, 96.9 0.00059 2E-08 55.6 3.9 26 67-92 6-31 (203)
482 3iij_A Coilin-interacting nucl 96.9 0.0005 1.7E-08 55.3 3.3 27 67-93 9-35 (180)
483 4b4t_J 26S protease regulatory 96.9 0.002 6.7E-08 59.3 7.6 68 21-95 140-208 (405)
484 2jaq_A Deoxyguanosine kinase; 96.9 0.0005 1.7E-08 56.0 3.3 24 71-94 2-25 (205)
485 2qz4_A Paraplegin; AAA+, SPG7, 96.9 0.0036 1.2E-07 53.0 8.8 27 67-93 37-63 (262)
486 3trf_A Shikimate kinase, SK; a 96.9 0.00055 1.9E-08 55.2 3.4 25 69-93 5-29 (185)
487 1tev_A UMP-CMP kinase; ploop, 96.9 0.00057 1.9E-08 55.2 3.5 25 69-93 3-27 (196)
488 2woj_A ATPase GET3; tail-ancho 96.9 0.016 5.5E-07 52.2 13.5 39 70-108 19-59 (354)
489 1gvn_B Zeta; postsegregational 96.9 0.00055 1.9E-08 60.0 3.4 28 66-93 30-57 (287)
490 1nks_A Adenylate kinase; therm 96.9 0.00062 2.1E-08 54.9 3.5 24 71-94 3-26 (194)
491 4b4t_H 26S protease regulatory 96.8 0.002 6.9E-08 60.2 7.2 66 23-95 203-269 (467)
492 4ag6_A VIRB4 ATPase, type IV s 96.8 0.00061 2.1E-08 62.1 3.6 37 68-104 34-70 (392)
493 4b4t_K 26S protease regulatory 96.8 0.0033 1.1E-07 58.3 8.4 67 22-94 165-231 (428)
494 2ze6_A Isopentenyl transferase 96.8 0.00065 2.2E-08 58.3 3.4 23 71-93 3-25 (253)
495 1aky_A Adenylate kinase; ATP:A 96.8 0.00072 2.5E-08 56.3 3.6 26 68-93 3-28 (220)
496 3t15_A Ribulose bisphosphate c 96.8 0.0014 4.9E-08 57.4 5.6 27 67-93 34-60 (293)
497 3r20_A Cytidylate kinase; stru 96.8 0.00055 1.9E-08 58.4 2.8 26 68-93 8-33 (233)
498 4b4t_I 26S protease regulatory 96.8 0.0029 1E-07 58.6 7.8 67 22-95 175-242 (437)
499 3umf_A Adenylate kinase; rossm 96.8 0.00074 2.5E-08 56.9 3.5 28 66-93 26-53 (217)
500 1via_A Shikimate kinase; struc 96.8 0.00057 2E-08 54.8 2.7 23 71-93 6-28 (175)
No 1
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.92 E-value=9.9e-25 Score=187.47 Aligned_cols=142 Identities=12% Similarity=0.070 Sum_probs=101.2
Q ss_pred cccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC--------------Cc----------cccccc
Q 024413 63 INFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM--------------TL----------PFAANI 118 (268)
Q Consensus 63 ~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~--------------~~----------~~~~~~ 118 (268)
...+++|++++|+||||||||||+++|+|+.+|++|.|+++|.+.... .+ +..+++
T Consensus 24 sl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l 103 (224)
T 2pcj_A 24 SLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENV 103 (224)
T ss_dssp EEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHH
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHH
Confidence 445899999999999999999999999999999999999988764210 01 111111
Q ss_pred ch----------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCc-chhhhhhHHH
Q 024413 119 DI----------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQI-EIFTWSASGA 187 (268)
Q Consensus 119 ~~----------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~-~~~~~~~~~~ 187 (268)
.. ....++.++++.++|....... +.+||||||||++||+|++.+|+++|+|||+.. |+.......
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~- 180 (224)
T 2pcj_A 104 IVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRK--PYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVM- 180 (224)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCC--GGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHH-
T ss_pred HhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCC--hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHH-
Confidence 11 0123467789999998665555 999999999999999999999999999999875 443323333
Q ss_pred HHHHHHhccCCcEEEEEEcC
Q 024413 188 IITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 188 ~i~~~~~~~~~d~vv~vvD~ 207 (268)
.+...++.....+++..||.
T Consensus 181 ~~l~~l~~~g~tvi~vtHd~ 200 (224)
T 2pcj_A 181 DIFLKINEGGTSIVMVTHER 200 (224)
T ss_dssp HHHHHHHHTTCEEEEECSCH
T ss_pred HHHHHHHHCCCEEEEEcCCH
Confidence 33344433334555554553
No 2
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.92 E-value=9.2e-25 Score=193.18 Aligned_cols=145 Identities=10% Similarity=0.000 Sum_probs=105.1
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC------------CCccccc-----ccch----
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV------------MTLPFAA-----NIDI---- 120 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~------------~~~~~~~-----~~~~---- 120 (268)
....+++|++++|+||||||||||+++|+|+.+|++|.|+++|.+... ..+++.. ..++
T Consensus 27 isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l 106 (275)
T 3gfo_A 27 INMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDV 106 (275)
T ss_dssp EEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHH
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCcHHHHH
Confidence 344589999999999999999999999999999999999999976521 0111110 1111
Q ss_pred ------------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCc-chhhhhhHHH
Q 024413 121 ------------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQI-EIFTWSASGA 187 (268)
Q Consensus 121 ------------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~-~~~~~~~~~~ 187 (268)
....++.++++.++|....... +.+||||||||++||+|++.+|+++|+|||+.. |+........
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~--~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~ 184 (275)
T 3gfo_A 107 SFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKP--THCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMK 184 (275)
T ss_dssp HHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSB--GGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCC--cccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHH
Confidence 1134577899999997655544 999999999999999999999999999999875 4433333333
Q ss_pred HHHHHHh-ccCCcEEEEEEcCCC
Q 024413 188 IITEAFA-STFPTVVTYVVDTPR 209 (268)
Q Consensus 188 ~i~~~~~-~~~~d~vv~vvD~~~ 209 (268)
+.+.++ .....+|+..+|...
T Consensus 185 -~l~~l~~~~g~tvi~vtHdl~~ 206 (275)
T 3gfo_A 185 -LLVEMQKELGITIIIATHDIDI 206 (275)
T ss_dssp -HHHHHHHHHCCEEEEEESCCSS
T ss_pred -HHHHHHhhCCCEEEEEecCHHH
Confidence 333343 334566666677643
No 3
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.92 E-value=1.1e-24 Score=198.90 Aligned_cols=131 Identities=15% Similarity=0.119 Sum_probs=98.3
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC----------------C------Ccccccccc
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV----------------M------TLPFAANID 119 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~----------------~------~~~~~~~~~ 119 (268)
....+++|++++|+||||||||||+++|+|+.+|++|.|+++|.+... + .++..+|+.
T Consensus 23 vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~ 102 (359)
T 3fvq_A 23 ISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIA 102 (359)
T ss_dssp EEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHH
T ss_pred eEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHH
Confidence 344589999999999999999999999999999999999999876410 0 011111211
Q ss_pred h----------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCc-chhhhhhHHHH
Q 024413 120 I----------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQI-EIFTWSASGAI 188 (268)
Q Consensus 120 ~----------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~-~~~~~~~~~~~ 188 (268)
. ....++.++++.++|....... +.+||||||||++||||++.+|+++|+|||... |+.........
T Consensus 103 ~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~--~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~ 180 (359)
T 3fvq_A 103 YGLGNGKGRTAQERQRIEAMLELTGISELAGRY--PHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIRED 180 (359)
T ss_dssp TTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSC--GGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHH
T ss_pred HHHHHcCCChHHHHHHHHHHHHHcCCchHhcCC--hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 1 1234678899999998766655 999999999999999999999999999999875 44333333333
Q ss_pred HHHHHh
Q 024413 189 ITEAFA 194 (268)
Q Consensus 189 i~~~~~ 194 (268)
+.+..+
T Consensus 181 l~~~~~ 186 (359)
T 3fvq_A 181 MIAALR 186 (359)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 4
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.92 E-value=1.1e-24 Score=188.47 Aligned_cols=145 Identities=17% Similarity=0.144 Sum_probs=101.0
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC------------------C------Ccccccc
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV------------------M------TLPFAAN 117 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~------------------~------~~~~~~~ 117 (268)
....+++|++++|+||||||||||+++|+|+.+|++|.|+++|.+... + .++..++
T Consensus 24 isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~en 103 (235)
T 3tif_A 24 VNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALEN 103 (235)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHH
T ss_pred eeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHH
Confidence 344589999999999999999999999999999999999999865421 0 1111112
Q ss_pred cch-------------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhh
Q 024413 118 IDI-------------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSA 184 (268)
Q Consensus 118 ~~~-------------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~ 184 (268)
+.. ....++.++++.+++.... ....+.+||||||||++||+|++.+|+++|+|||+..-+.....
T Consensus 104 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~ 182 (235)
T 3tif_A 104 VELPLIFKYRGAMSGEERRKRALECLKMAELEERF-ANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGE 182 (235)
T ss_dssp HHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGG-TTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHH
T ss_pred HHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhh-hhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 111 0123466788999987532 12339999999999999999999999999999998754322222
Q ss_pred HHHHHHHHHhcc-CCcEEEEEEcC
Q 024413 185 SGAIITEAFAST-FPTVVTYVVDT 207 (268)
Q Consensus 185 ~~~~i~~~~~~~-~~d~vv~vvD~ 207 (268)
....+.+.++.. ...+|+..||.
T Consensus 183 ~i~~~l~~l~~~~g~tvi~vtHd~ 206 (235)
T 3tif_A 183 KIMQLLKKLNEEDGKTVVVVTHDI 206 (235)
T ss_dssp HHHHHHHHHHHHHCCEEEEECSCH
T ss_pred HHHHHHHHHHHHcCCEEEEEcCCH
Confidence 333333334332 44566655554
No 5
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.92 E-value=1.3e-24 Score=198.69 Aligned_cols=117 Identities=14% Similarity=0.122 Sum_probs=92.8
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC-----------------------Ccccccc
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM-----------------------TLPFAAN 117 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~-----------------------~~~~~~~ 117 (268)
...+.+++|++++|+||||||||||+++|+|+.+|++|.|+++|.+.... .++..++
T Consensus 46 ~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~en 125 (366)
T 3tui_C 46 NVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGN 125 (366)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHH
T ss_pred eeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHH
Confidence 34455899999999999999999999999999999999999999765311 0111111
Q ss_pred cch----------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 118 IDI----------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 118 ~~~----------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
+.. ....++.++++.++|....... +.+||||||||++|||||+.+|+++|+|||+...+
T Consensus 126 v~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~--~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD 195 (366)
T 3tui_C 126 VALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSY--PSNLSGGQKQRVAIARALASNPKVLLCDQATSALD 195 (366)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCC--TTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCC--hhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCC
Confidence 111 1134578899999998765544 99999999999999999999999999999987543
No 6
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.91 E-value=1.7e-24 Score=184.80 Aligned_cols=145 Identities=9% Similarity=-0.023 Sum_probs=104.2
Q ss_pred cccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCC---------CC------Ccccccccch-------
Q 024413 63 INFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA---------VM------TLPFAANIDI------- 120 (268)
Q Consensus 63 ~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~---------~~------~~~~~~~~~~------- 120 (268)
...+++|++++|+||||||||||+++|+|+.+|++|.|+++|.+.. .+ .++..+++..
T Consensus 29 sl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~ 108 (214)
T 1sgw_A 29 TMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV 108 (214)
T ss_dssp EEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCC
Confidence 4458899999999999999999999999999999999999886531 01 1111122211
Q ss_pred -hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCc-chhhhhhHHHHHHHHHhccCC
Q 024413 121 -RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQI-EIFTWSASGAIITEAFASTFP 198 (268)
Q Consensus 121 -~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~-~~~~~~~~~~~i~~~~~~~~~ 198 (268)
.+..++.++++.+++... ... +..||||||||++||+|++.+|+++|+|||+.. |+.........+ ..++....
T Consensus 109 ~~~~~~~~~~l~~~gl~~~-~~~--~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l-~~~~~~g~ 184 (214)
T 1sgw_A 109 KVNKNEIMDALESVEVLDL-KKK--LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSI-LEILKEKG 184 (214)
T ss_dssp CCCHHHHHHHHHHTTCCCT-TSB--GGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHH-HHHHHHHS
T ss_pred chHHHHHHHHHHHcCCCcC-CCC--hhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHH-HHHHhCCC
Confidence 113457789999999866 433 899999999999999999999999999999875 443333333333 33333334
Q ss_pred cEEEEEEcCCCcC
Q 024413 199 TVVTYVVDTPRSA 211 (268)
Q Consensus 199 d~vv~vvD~~~~~ 211 (268)
.+++..+|.....
T Consensus 185 tiiivtHd~~~~~ 197 (214)
T 1sgw_A 185 IVIISSREELSYC 197 (214)
T ss_dssp EEEEEESSCCTTS
T ss_pred EEEEEeCCHHHHH
Confidence 6677777765433
No 7
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.91 E-value=2.3e-24 Score=189.44 Aligned_cols=143 Identities=15% Similarity=0.139 Sum_probs=101.2
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC------------CCc----------ccccccc
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV------------MTL----------PFAANID 119 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~------------~~~----------~~~~~~~ 119 (268)
....+++|++++|+||||||||||+++|+|+++|++|.|+++|.+... ..+ +..+++.
T Consensus 43 vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~ 122 (263)
T 2olj_A 43 INVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNIT 122 (263)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHH
T ss_pred eEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHH
Confidence 344589999999999999999999999999999999999999876420 001 1111111
Q ss_pred h-h----------hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCc-chhhhhhHHH
Q 024413 120 I-R----------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQI-EIFTWSASGA 187 (268)
Q Consensus 120 ~-~----------~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~-~~~~~~~~~~ 187 (268)
. . ...++.++++.++|....... +.+||||||||++||+|++.+|+++|+|||+.. |+.......
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~--~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~- 199 (263)
T 2olj_A 123 LAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAY--PDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVL- 199 (263)
T ss_dssp HHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSC--GGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHH-
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCC--hhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHH-
Confidence 1 0 123567789999997655544 899999999999999999999999999999875 443333333
Q ss_pred HHHHHHhccCCcEEEEEEcC
Q 024413 188 IITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 188 ~i~~~~~~~~~d~vv~vvD~ 207 (268)
.+.+.++.....+|+..+|.
T Consensus 200 ~~l~~l~~~g~tvi~vtHd~ 219 (263)
T 2olj_A 200 SVMKQLANEGMTMVVVTHEM 219 (263)
T ss_dssp HHHHHHHHTTCEEEEECSCH
T ss_pred HHHHHHHhCCCEEEEEcCCH
Confidence 33344433333444444443
No 8
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.91 E-value=1.9e-24 Score=198.65 Aligned_cols=116 Identities=13% Similarity=0.052 Sum_probs=92.9
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC------------C------Ccccccccch---
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV------------M------TLPFAANIDI--- 120 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~------------~------~~~~~~~~~~--- 120 (268)
..+.+++|++++|+||||||||||+++|+|+++|++|.|+++|.+... + .++..+|+..
T Consensus 22 vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~ 101 (381)
T 3rlf_A 22 INLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLK 101 (381)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHH
T ss_pred eEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHH
Confidence 344589999999999999999999999999999999999999876431 1 1122222221
Q ss_pred -------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 121 -------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 121 -------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
....++.++++.++|....... +.+||||||||++||||++.+|+++|+|||+...+
T Consensus 102 ~~~~~~~~~~~~v~~~l~~~~L~~~~~r~--p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD 165 (381)
T 3rlf_A 102 LAGAKKEVINQRVNQVAEVLQLAHLLDRK--PKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165 (381)
T ss_dssp HTTCCHHHHHHHHHHHHHHTTCGGGTTCC--GGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSC
T ss_pred HcCCCHHHHHHHHHHHHHHcCCchhhcCC--hhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCC
Confidence 1134678899999998766555 99999999999999999999999999999987543
No 9
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.91 E-value=2.1e-24 Score=190.10 Aligned_cols=144 Identities=13% Similarity=0.130 Sum_probs=103.4
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC--------------------Ccccccccch-
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM--------------------TLPFAANIDI- 120 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~--------------------~~~~~~~~~~- 120 (268)
....+++|++++|+||||||||||+++|+|+.+|++|.|+++|.+.... ..+..+++..
T Consensus 30 vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~ 109 (266)
T 4g1u_C 30 VSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMG 109 (266)
T ss_dssp EEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGG
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhh
Confidence 3445899999999999999999999999999999999999998764311 0111111111
Q ss_pred -------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhc------CCCEEEEeCCCCcchhhhhhHHH
Q 024413 121 -------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRAD------HLDYVLVDTPGQIEIFTWSASGA 187 (268)
Q Consensus 121 -------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~------~~~illlDePG~~~~~~~~~~~~ 187 (268)
....++.++++.+++....... +.+||||||||++||+|++. +|+++|+|||+..-+........
T Consensus 110 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~ 187 (266)
T 4g1u_C 110 RAPYGGSQDRQALQQVMAQTDCLALAQRD--YRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTL 187 (266)
T ss_dssp GTTSCSTTHHHHHHHHHHHTTCSTTTTSB--GGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHHHcCChhHhcCC--cccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHH
Confidence 1245678899999998665555 89999999999999999999 99999999998754322222333
Q ss_pred HHHHHHhccCC-cEEEEEEcC
Q 024413 188 IITEAFASTFP-TVVTYVVDT 207 (268)
Q Consensus 188 ~i~~~~~~~~~-d~vv~vvD~ 207 (268)
.+.+.++.... .+++..||.
T Consensus 188 ~~l~~l~~~~~~tvi~vtHdl 208 (266)
T 4g1u_C 188 RLLRQLTRQEPLAVCCVLHDL 208 (266)
T ss_dssp HHHHHHHHHSSEEEEEECSCH
T ss_pred HHHHHHHHcCCCEEEEEEcCH
Confidence 33344433332 455554554
No 10
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.91 E-value=3.3e-24 Score=187.80 Aligned_cols=145 Identities=12% Similarity=0.031 Sum_probs=103.6
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC---------------CC------cccccccch
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV---------------MT------LPFAANIDI 120 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~---------------~~------~~~~~~~~~ 120 (268)
....+++|++++|+||||||||||+++|+|+++|++|.|+++|.+... +. .+..+++..
T Consensus 26 vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~ 105 (257)
T 1g6h_A 26 VSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLI 105 (257)
T ss_dssp ECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHG
T ss_pred eEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHH
Confidence 344589999999999999999999999999999999999998865421 00 111111100
Q ss_pred -----------------------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCc
Q 024413 121 -----------------------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQI 177 (268)
Q Consensus 121 -----------------------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~ 177 (268)
....++.++++.++|....... +.+||||||||++||+|++.+|+++|+|||+..
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~ 183 (257)
T 1g6h_A 106 GEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRK--AGELSGGQMKLVEIGRALMTNPKMIVMDEPIAG 183 (257)
T ss_dssp GGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSB--GGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTT
T ss_pred HHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCC--chhCCHHHHHHHHHHHHHHcCCCEEEEeCCccC
Confidence 0123567889999997655554 899999999999999999999999999999875
Q ss_pred chhhhhhHHHHHHHHHhccCCcEEEEEEcCC
Q 024413 178 EIFTWSASGAIITEAFASTFPTVVTYVVDTP 208 (268)
Q Consensus 178 ~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~ 208 (268)
-+.........+.+.++.....+|+..||..
T Consensus 184 LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~ 214 (257)
T 1g6h_A 184 VAPGLAHDIFNHVLELKAKGITFLIIEHRLD 214 (257)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCEEEEECSCCS
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEecCHH
Confidence 4322223333333444334456666666664
No 11
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.91 E-value=5.7e-24 Score=186.26 Aligned_cols=142 Identities=11% Similarity=0.013 Sum_probs=101.3
Q ss_pred cccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC---------CCc----------ccccccchh--
Q 024413 63 INFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV---------MTL----------PFAANIDIR-- 121 (268)
Q Consensus 63 ~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~---------~~~----------~~~~~~~~~-- 121 (268)
...+++|++++|+||||||||||+++|+|+.+|++|.|+++|.+... ..+ +..+++...
T Consensus 35 sl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~ 114 (256)
T 1vpl_A 35 SFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAG 114 (256)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHH
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHH
Confidence 44589999999999999999999999999999999999998876421 001 111121110
Q ss_pred --------hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCc-chhhhhhHHHHHHHH
Q 024413 122 --------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQI-EIFTWSASGAIITEA 192 (268)
Q Consensus 122 --------~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~-~~~~~~~~~~~i~~~ 192 (268)
...++.++++.++|....... +..||||||||++||+|++.+|+++|+|||+.. |+........ +...
T Consensus 115 ~~~~~~~~~~~~~~~~l~~~gL~~~~~~~--~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~-~l~~ 191 (256)
T 1vpl_A 115 FYASSSSEIEEMVERATEIAGLGEKIKDR--VSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRK-ILKQ 191 (256)
T ss_dssp HHCCCHHHHHHHHHHHHHHHCCGGGGGSB--GGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHH-HHHH
T ss_pred HcCCChHHHHHHHHHHHHHCCCchHhcCC--hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHH-HHHH
Confidence 023567789999997654444 899999999999999999999999999999875 4433333333 3333
Q ss_pred HhccCCcEEEEEEcC
Q 024413 193 FASTFPTVVTYVVDT 207 (268)
Q Consensus 193 ~~~~~~d~vv~vvD~ 207 (268)
++.....+|+..+|.
T Consensus 192 l~~~g~tiiivtHd~ 206 (256)
T 1vpl_A 192 ASQEGLTILVSSHNM 206 (256)
T ss_dssp HHHTTCEEEEEECCH
T ss_pred HHhCCCEEEEEcCCH
Confidence 433334555555554
No 12
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.91 E-value=4.8e-24 Score=187.36 Aligned_cols=143 Identities=16% Similarity=0.118 Sum_probs=101.5
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC---------------------------CC---
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV---------------------------MT--- 111 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~---------------------------~~--- 111 (268)
....+++|++++|+||||||||||+++|+|+.+|++|.|+++|.+... +.
T Consensus 25 vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l 104 (262)
T 1b0u_A 25 VSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNL 104 (262)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCC
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEecCccc
Confidence 344589999999999999999999999999999999999998865420 00
Q ss_pred ---cccccccch-h----------hHHHHHHHHHHcCCCCC-CCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 024413 112 ---LPFAANIDI-R----------DTIRYKEVMKQFNLGPN-GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQ 176 (268)
Q Consensus 112 ---~~~~~~~~~-~----------~~~~~~~~l~~~~l~~~-~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~ 176 (268)
++..+++.. . ...++.++++.++|... .... +.+|||||+||++||+|++.+|+++|+|||+.
T Consensus 105 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~--~~~LSgGq~qRv~lAraL~~~p~lllLDEPts 182 (262)
T 1b0u_A 105 WSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKY--PVHLSGGQQQRVSIARALAMEPDVLLFDEPTS 182 (262)
T ss_dssp CTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSC--GGGSCHHHHHHHHHHHHHHTCCSEEEEESTTT
T ss_pred CCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCC--cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 111111111 0 12356778999999754 4444 89999999999999999999999999999987
Q ss_pred c-chhhhhhHHHHHHHHHhccCCcEEEEEEcC
Q 024413 177 I-EIFTWSASGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 177 ~-~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
. |+....... .+.+.++.....+|+..+|.
T Consensus 183 ~LD~~~~~~~~-~~l~~l~~~g~tvi~vtHd~ 213 (262)
T 1b0u_A 183 ALDPELVGEVL-RIMQQLAEEGKTMVVVTHEM 213 (262)
T ss_dssp TSCHHHHHHHH-HHHHHHHHTTCCEEEECSCH
T ss_pred cCCHHHHHHHH-HHHHHHHhCCCEEEEEeCCH
Confidence 5 443333333 33344433344555555554
No 13
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.91 E-value=5.1e-24 Score=186.27 Aligned_cols=142 Identities=15% Similarity=0.098 Sum_probs=99.8
Q ss_pred cccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEE-------ecccCCCCCcccccccch--------------h
Q 024413 63 INFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYV-------MNLDPAVMTLPFAANIDI--------------R 121 (268)
Q Consensus 63 ~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i-------~~~~~~~~~~~~~~~~~~--------------~ 121 (268)
...+++|++++|+||||||||||+++|+|+.+|++|.|++ .+........+..+++.. .
T Consensus 25 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~ 104 (253)
T 2nq2_C 25 NFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSH 104 (253)
T ss_dssp EEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHH
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHH
Confidence 4458999999999999999999999999999999998853 332222222233222211 1
Q ss_pred hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCc-chhhhhhHHHHHHHHHhcc-CCc
Q 024413 122 DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQI-EIFTWSASGAIITEAFAST-FPT 199 (268)
Q Consensus 122 ~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~-~~~~~~~~~~~i~~~~~~~-~~d 199 (268)
...++.++++.+++....... +.+||||||||++||+|++.+|+++|+|||+.. |+........ +...++.. ...
T Consensus 105 ~~~~~~~~l~~~~l~~~~~~~--~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~-~l~~l~~~~g~t 181 (253)
T 2nq2_C 105 DYQVAMQALDYLNLTHLAKRE--FTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLS-LLIDLAQSQNMT 181 (253)
T ss_dssp HHHHHHHHHHHTTCGGGTTSB--GGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHH-HHHHHHHTSCCE
T ss_pred HHHHHHHHHHHcCChHHhcCC--hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCE
Confidence 234577899999998655544 899999999999999999999999999999875 4433333333 33334333 345
Q ss_pred EEEEEEcC
Q 024413 200 VVTYVVDT 207 (268)
Q Consensus 200 ~vv~vvD~ 207 (268)
+|+..+|.
T Consensus 182 vi~vtHd~ 189 (253)
T 2nq2_C 182 VVFTTHQP 189 (253)
T ss_dssp EEEEESCH
T ss_pred EEEEecCH
Confidence 55555554
No 14
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.91 E-value=7.8e-24 Score=183.73 Aligned_cols=142 Identities=12% Similarity=0.051 Sum_probs=101.2
Q ss_pred cccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCC--------CCCccc----------ccccch----
Q 024413 63 INFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA--------VMTLPF----------AANIDI---- 120 (268)
Q Consensus 63 ~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~--------~~~~~~----------~~~~~~---- 120 (268)
...+++ ++++|+||||||||||+++|+|+.+|++|.|+++|.+.. ...+++ .+++..
T Consensus 19 sl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~ 97 (240)
T 2onk_A 19 DFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRN 97 (240)
T ss_dssp EEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTT
T ss_pred EEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHH
Confidence 344788 999999999999999999999999999999999986542 111111 111111
Q ss_pred ----hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCc-chhhhhhHHHHHHHHHhc
Q 024413 121 ----RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQI-EIFTWSASGAIITEAFAS 195 (268)
Q Consensus 121 ----~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~-~~~~~~~~~~~i~~~~~~ 195 (268)
....++.++++.+++....... +.+||||||||++||+|++.+|+++|+|||+.. |+.........+.+..+.
T Consensus 98 ~~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~ 175 (240)
T 2onk_A 98 VERVERDRRVREMAEKLGIAHLLDRK--PARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQRE 175 (240)
T ss_dssp SCHHHHHHHHHHHHHTTTCTTTTTCC--GGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHcCCHHHhcCC--hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 1134577889999998665554 899999999999999999999999999999875 443333333333332222
Q ss_pred cCCcEEEEEEcC
Q 024413 196 TFPTVVTYVVDT 207 (268)
Q Consensus 196 ~~~d~vv~vvD~ 207 (268)
....+++..+|.
T Consensus 176 ~g~tvi~vtHd~ 187 (240)
T 2onk_A 176 FDVPILHVTHDL 187 (240)
T ss_dssp HTCCEEEEESCH
T ss_pred cCCEEEEEeCCH
Confidence 245666666664
No 15
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.91 E-value=4.8e-24 Score=194.61 Aligned_cols=126 Identities=13% Similarity=0.148 Sum_probs=95.4
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC------------C------Ccccccccch---
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV------------M------TLPFAANIDI--- 120 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~------------~------~~~~~~~~~~--- 120 (268)
....+++|++++|+||||||||||+++|+|+.+|++|.|+++|.+... + .++..+++..
T Consensus 34 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~ 113 (355)
T 1z47_A 34 VSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLR 113 (355)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHH
Confidence 344589999999999999999999999999999999999999876421 0 1111122211
Q ss_pred -h------hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCc-chhhhhhHHHHH
Q 024413 121 -R------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQI-EIFTWSASGAII 189 (268)
Q Consensus 121 -~------~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~-~~~~~~~~~~~i 189 (268)
. ...++.++++.++|....... +.+||||||||++||||++.+|+++|+|||... |+.........+
T Consensus 114 ~~~~~~~~~~~~v~~~l~~~gL~~~~~r~--~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l 188 (355)
T 1z47_A 114 EKRVPKDEMDARVRELLRFMRLESYANRF--PHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFV 188 (355)
T ss_dssp HTTCCHHHHHHHHHHHHHHTTCGGGTTSC--GGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHcCChhHhcCC--cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 0 124577899999998665555 999999999999999999999999999999875 443333333333
No 16
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.91 E-value=9.6e-24 Score=192.93 Aligned_cols=127 Identities=15% Similarity=0.072 Sum_probs=95.9
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC------------CC------cccccccch---
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV------------MT------LPFAANIDI--- 120 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~------------~~------~~~~~~~~~--- 120 (268)
....+++|++++|+||||||||||+++|+|+.+|++|.|+++|.+... ++ ++..+++..
T Consensus 22 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~ 101 (359)
T 2yyz_A 22 VSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLR 101 (359)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGS
T ss_pred eEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHH
Confidence 344589999999999999999999999999999999999999876421 11 111122211
Q ss_pred -h------hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCc-chhhhhhHHHHHH
Q 024413 121 -R------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQI-EIFTWSASGAIIT 190 (268)
Q Consensus 121 -~------~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~-~~~~~~~~~~~i~ 190 (268)
. ...++.++++.++|....... +.+||||||||++||||++.+|+++|+|||... |+.........+.
T Consensus 102 ~~~~~~~~~~~~v~~~l~~~~L~~~~~r~--~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~ 177 (359)
T 2yyz_A 102 ARRISKDEVEKRVVEIARKLLIDNLLDRK--PTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIK 177 (359)
T ss_dssp SSCSHHHHTTHHHHHHHHHTTCGGGTTSC--GGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHcCCchHhcCC--hhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence 0 124678899999998765555 999999999999999999999999999999875 4433333333333
No 17
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.91 E-value=5.7e-24 Score=193.76 Aligned_cols=143 Identities=13% Similarity=0.103 Sum_probs=102.3
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC------------CC------cccccccchh--
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV------------MT------LPFAANIDIR-- 121 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~------------~~------~~~~~~~~~~-- 121 (268)
....+++|++++|+||||||||||+++|+|+.+|++|.|+++|.+... ++ ++..+|+...
T Consensus 19 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~ 98 (348)
T 3d31_A 19 LSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMR 98 (348)
T ss_dssp EEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHH
T ss_pred eEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHH
Confidence 344589999999999999999999999999999999999999876421 11 1111222110
Q ss_pred -----hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCc-chhhhhhHHHHHHHHHhc
Q 024413 122 -----DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQI-EIFTWSASGAIITEAFAS 195 (268)
Q Consensus 122 -----~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~-~~~~~~~~~~~i~~~~~~ 195 (268)
...++.++++.++|....... +.+||||||||++||||++.+|+++|+|||... |+.........+.+..+.
T Consensus 99 ~~~~~~~~~v~~~l~~~~L~~~~~~~--~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~ 176 (348)
T 3d31_A 99 MKKIKDPKRVLDTARDLKIEHLLDRN--PLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKK 176 (348)
T ss_dssp HHCCCCHHHHHHHHHHTTCTTTTTSC--GGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHcCCchHhcCC--hhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHh
Confidence 114678899999998766655 999999999999999999999999999999875 443333333333333222
Q ss_pred cCCcEEEEEEc
Q 024413 196 TFPTVVTYVVD 206 (268)
Q Consensus 196 ~~~d~vv~vvD 206 (268)
....+|+..||
T Consensus 177 ~g~tii~vTHd 187 (348)
T 3d31_A 177 NKLTVLHITHD 187 (348)
T ss_dssp TTCEEEEEESC
T ss_pred cCCEEEEEeCC
Confidence 23344444444
No 18
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.91 E-value=1.3e-23 Score=192.22 Aligned_cols=126 Identities=13% Similarity=0.112 Sum_probs=95.5
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC------------CC------cccccccch---
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV------------MT------LPFAANIDI--- 120 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~------------~~------~~~~~~~~~--- 120 (268)
....+++|++++|+||||||||||+++|+|+.+|++|.|+++|.+... ++ ++..+|+..
T Consensus 22 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~ 101 (362)
T 2it1_A 22 INLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLE 101 (362)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHH
Confidence 344589999999999999999999999999999999999999876421 01 111122211
Q ss_pred -------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCc-chhhhhhHHHHH
Q 024413 121 -------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQI-EIFTWSASGAII 189 (268)
Q Consensus 121 -------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~-~~~~~~~~~~~i 189 (268)
....++.++++.++|....... +.+||||||||++||||++.+|+++|+|||... |+.........+
T Consensus 102 ~~~~~~~~~~~~v~~~l~~~~L~~~~~r~--~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l 176 (362)
T 2it1_A 102 LRKAPREEIDKKVREVAKMLHIDKLLNRY--PWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAEL 176 (362)
T ss_dssp HTTCCHHHHHHHHHHHHHHTTCTTCTTCC--GGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHcCCchHhhCC--hhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHH
Confidence 0124577899999998766555 999999999999999999999999999999875 443333333333
No 19
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.90 E-value=6e-24 Score=184.38 Aligned_cols=142 Identities=12% Similarity=0.058 Sum_probs=100.0
Q ss_pred cccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC-----------CC----------cccccccch-
Q 024413 63 INFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV-----------MT----------LPFAANIDI- 120 (268)
Q Consensus 63 ~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~-----------~~----------~~~~~~~~~- 120 (268)
...+++|++++|+||||||||||+++|+|+++|++|.|+++|.+... .. ++..+++..
T Consensus 26 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~ 105 (240)
T 1ji0_A 26 DLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMG 105 (240)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGG
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHh
Confidence 44589999999999999999999999999999999999998865421 00 111111111
Q ss_pred --------hhHHHHHHHHHHcC-CCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCc-chhhhhhHHHHHH
Q 024413 121 --------RDTIRYKEVMKQFN-LGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQI-EIFTWSASGAIIT 190 (268)
Q Consensus 121 --------~~~~~~~~~l~~~~-l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~-~~~~~~~~~~~i~ 190 (268)
.....+.++++.++ +....... +.+||||||||++||+|++.+|+++|+|||+.. |+....... .+.
T Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~--~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~-~~l 182 (240)
T 1ji0_A 106 AYNRKDKEGIKRDLEWIFSLFPRLKERLKQL--GGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVF-EVI 182 (240)
T ss_dssp GTTCCCSSHHHHHHHHHHHHCHHHHTTTTSB--SSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHH-HHH
T ss_pred hhcCCCHHHHHHHHHHHHHHcccHhhHhcCC--hhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHH-HHH
Confidence 01234667888884 76554444 889999999999999999999999999999875 443333333 333
Q ss_pred HHHhccCCcEEEEEEcC
Q 024413 191 EAFASTFPTVVTYVVDT 207 (268)
Q Consensus 191 ~~~~~~~~d~vv~vvD~ 207 (268)
+.++.....+++..+|.
T Consensus 183 ~~~~~~g~tvi~vtHd~ 199 (240)
T 1ji0_A 183 QKINQEGTTILLVEQNA 199 (240)
T ss_dssp HHHHHTTCCEEEEESCH
T ss_pred HHHHHCCCEEEEEecCH
Confidence 34433344566665554
No 20
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.90 E-value=9.1e-24 Score=187.17 Aligned_cols=144 Identities=12% Similarity=0.125 Sum_probs=103.2
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCC--C----------CCc------------ccccc
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA--V----------MTL------------PFAAN 117 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~--~----------~~~------------~~~~~ 117 (268)
....+++|++++|+||||||||||+++|+|+.+|++|.|+++|.+.. . ..+ +..++
T Consensus 40 isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~en 119 (279)
T 2ihy_A 40 ISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDV 119 (279)
T ss_dssp EEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHH
T ss_pred eeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHH
Confidence 34458999999999999999999999999999999999999987642 1 001 11111
Q ss_pred cch--------------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCc-chhhh
Q 024413 118 IDI--------------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQI-EIFTW 182 (268)
Q Consensus 118 ~~~--------------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~-~~~~~ 182 (268)
+.. ....++.++++.++|....... +.+||||||||++||+|++.+|+++|+|||+.. |+...
T Consensus 120 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~ 197 (279)
T 2ihy_A 120 VISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQY--IGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIAR 197 (279)
T ss_dssp HHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSB--GGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHH
T ss_pred HHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCC--hhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHH
Confidence 111 0123467789999997655544 899999999999999999999999999999875 44333
Q ss_pred hhHHHHHHHHHhccCCcE--EEEEEcCC
Q 024413 183 SASGAIITEAFASTFPTV--VTYVVDTP 208 (268)
Q Consensus 183 ~~~~~~i~~~~~~~~~d~--vv~vvD~~ 208 (268)
......+ ..++.....+ |+..+|..
T Consensus 198 ~~l~~~l-~~l~~~g~tv~~iivtHd~~ 224 (279)
T 2ihy_A 198 ESLLSIL-DSLSDSYPTLAMIYVTHFIE 224 (279)
T ss_dssp HHHHHHH-HHHHHHCTTCEEEEEESCGG
T ss_pred HHHHHHH-HHHHHCCCEEEEEEEecCHH
Confidence 3333333 3333334456 66677754
No 21
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.90 E-value=1e-23 Score=185.68 Aligned_cols=143 Identities=13% Similarity=0.038 Sum_probs=102.2
Q ss_pred cccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCC-----------CCC-------cccccccch----
Q 024413 63 INFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-----------VMT-------LPFAANIDI---- 120 (268)
Q Consensus 63 ~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~-----------~~~-------~~~~~~~~~---- 120 (268)
...+++|++++|+||||||||||+++|+|+.+|++|.|+++|.+.. .+. .+..+++..
T Consensus 27 sl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~ 106 (266)
T 2yz2_A 27 SLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKN 106 (266)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTT
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHh
Confidence 4458999999999999999999999999999999999999886531 011 111111111
Q ss_pred -----hhHHHHHHHHHHcCCC--CCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCc-chhhhhhHHHHHHHH
Q 024413 121 -----RDTIRYKEVMKQFNLG--PNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQI-EIFTWSASGAIITEA 192 (268)
Q Consensus 121 -----~~~~~~~~~l~~~~l~--~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~-~~~~~~~~~~~i~~~ 192 (268)
....++.++++.++|. ...... +..||||||||++||+|++.+|+++|+|||+.. |+........ +.+.
T Consensus 107 ~~~~~~~~~~~~~~l~~~gl~~~~~~~~~--~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~-~l~~ 183 (266)
T 2yz2_A 107 FYPDRDPVPLVKKAMEFVGLDFDSFKDRV--PFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLR-IVEK 183 (266)
T ss_dssp TCTTSCSHHHHHHHHHHTTCCHHHHTTCC--GGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHH-HHHH
T ss_pred cCCHHHHHHHHHHHHHHcCcCCcccccCC--hhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHH-HHHH
Confidence 0134577899999997 555544 899999999999999999999999999999875 4333333333 3333
Q ss_pred HhccCCcEEEEEEcCC
Q 024413 193 FASTFPTVVTYVVDTP 208 (268)
Q Consensus 193 ~~~~~~d~vv~vvD~~ 208 (268)
++.....+|+..||..
T Consensus 184 l~~~g~tii~vtHd~~ 199 (266)
T 2yz2_A 184 WKTLGKTVILISHDIE 199 (266)
T ss_dssp HHHTTCEEEEECSCCT
T ss_pred HHHcCCEEEEEeCCHH
Confidence 4333445666666654
No 22
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.90 E-value=1.2e-23 Score=192.18 Aligned_cols=126 Identities=17% Similarity=0.115 Sum_probs=95.0
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC-----------------C------Cccccccc
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV-----------------M------TLPFAANI 118 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~-----------------~------~~~~~~~~ 118 (268)
....+++|++++|+||||||||||+++|+|+.+|++|.|+++|.+... + .++..+++
T Consensus 24 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni 103 (353)
T 1oxx_K 24 VNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENI 103 (353)
T ss_dssp EEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHH
T ss_pred eEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHH
Confidence 344589999999999999999999999999999999999998865311 0 01111121
Q ss_pred ch----------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCc-chhhhhhHHH
Q 024413 119 DI----------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQI-EIFTWSASGA 187 (268)
Q Consensus 119 ~~----------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~-~~~~~~~~~~ 187 (268)
.. ....++.++++.++|....... +.+||||||||++||||++.+|+++|+|||... |+........
T Consensus 104 ~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~--~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~ 181 (353)
T 1oxx_K 104 AFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHF--PRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARA 181 (353)
T ss_dssp HGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSC--GGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCC--hhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHH
Confidence 11 0134578899999998765555 999999999999999999999999999999875 4433333333
Q ss_pred HH
Q 024413 188 II 189 (268)
Q Consensus 188 ~i 189 (268)
.+
T Consensus 182 ~l 183 (353)
T 1oxx_K 182 LV 183 (353)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 23
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.90 E-value=1.7e-23 Score=192.23 Aligned_cols=126 Identities=16% Similarity=0.074 Sum_probs=94.7
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC------------------CC------cccccc
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV------------------MT------LPFAAN 117 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~------------------~~------~~~~~~ 117 (268)
....+++|++++|+||||||||||+++|+|+.+|++|.|+++|.+... ++ ++..++
T Consensus 22 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~en 101 (372)
T 1g29_1 22 MSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDN 101 (372)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHH
T ss_pred eEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCCCHHHH
Confidence 344588999999999999999999999999999999999998865311 00 111112
Q ss_pred cch----------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCc-chhhhhhHH
Q 024413 118 IDI----------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQI-EIFTWSASG 186 (268)
Q Consensus 118 ~~~----------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~-~~~~~~~~~ 186 (268)
+.. ....++.++++.++|....... +.+||||||||++||||++.+|+++|+|||... |+.......
T Consensus 102 i~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~--~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~ 179 (372)
T 1g29_1 102 IAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRK--PRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMR 179 (372)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCC--GGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCC--cccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHH
Confidence 111 0123577899999998665555 999999999999999999999999999999874 443333333
Q ss_pred HHH
Q 024413 187 AII 189 (268)
Q Consensus 187 ~~i 189 (268)
..+
T Consensus 180 ~~l 182 (372)
T 1g29_1 180 AEL 182 (372)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 24
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.90 E-value=8.7e-24 Score=194.07 Aligned_cols=126 Identities=15% Similarity=0.096 Sum_probs=95.5
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC------------C------Ccccccccch---
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV------------M------TLPFAANIDI--- 120 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~------------~------~~~~~~~~~~--- 120 (268)
....+++|++++|+||||||||||+++|+|+.+|++|.|+++|.+... + .++..+++..
T Consensus 30 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~ 109 (372)
T 1v43_A 30 LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLK 109 (372)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC
T ss_pred eEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHH
Confidence 344589999999999999999999999999999999999999876421 0 1111122111
Q ss_pred -----h--hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCc-chhhhhhHHHHH
Q 024413 121 -----R--DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQI-EIFTWSASGAII 189 (268)
Q Consensus 121 -----~--~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~-~~~~~~~~~~~i 189 (268)
. ...++.++++.++|....... +.+||||||||++||||++.+|+++|+|||... |+.........+
T Consensus 110 ~~~~~~~~~~~~v~~~l~~~~L~~~~~r~--~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l 184 (372)
T 1v43_A 110 IKKFPKDEIDKRVRWAAELLQIEELLNRY--PAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEI 184 (372)
T ss_dssp --CCCHHHHHHHHHHHHHHTTCGGGTTSC--TTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHcCChhHhcCC--hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHH
Confidence 0 124578899999998665555 999999999999999999999999999999875 443333333333
No 25
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.90 E-value=1.5e-23 Score=182.92 Aligned_cols=142 Identities=17% Similarity=0.091 Sum_probs=100.5
Q ss_pred cccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC--------------CC------cccccccchh-
Q 024413 63 INFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV--------------MT------LPFAANIDIR- 121 (268)
Q Consensus 63 ~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~--------------~~------~~~~~~~~~~- 121 (268)
...+++|++++|+||||||||||+++|+|+++|+ |.|.++|.+... +. .+..+++...
T Consensus 20 sl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~ 98 (249)
T 2qi9_C 20 SGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQ 98 (249)
T ss_dssp EEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTC
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhh
Confidence 3458999999999999999999999999999999 999998865311 00 1111111110
Q ss_pred ----hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCC-------EEEEeCCCCcchhhhhhHHHHHH
Q 024413 122 ----DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLD-------YVLVDTPGQIEIFTWSASGAIIT 190 (268)
Q Consensus 122 ----~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~-------illlDePG~~~~~~~~~~~~~i~ 190 (268)
...++.++++.+++....... +..||||||||++||+|++.+|+ ++|+|||+..-+.........+.
T Consensus 99 ~~~~~~~~~~~~l~~~~l~~~~~~~--~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l 176 (249)
T 2qi9_C 99 HDKTRTELLNDVAGALALDDKLGRS--TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKIL 176 (249)
T ss_dssp SSTTCHHHHHHHHHHTTCGGGTTSB--GGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHcCChhHhcCC--hhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHH
Confidence 245678899999997655544 89999999999999999999999 99999998754322222233333
Q ss_pred HHHhccCCcEEEEEEcC
Q 024413 191 EAFASTFPTVVTYVVDT 207 (268)
Q Consensus 191 ~~~~~~~~d~vv~vvD~ 207 (268)
+.++.....+++..+|.
T Consensus 177 ~~l~~~g~tviivtHd~ 193 (249)
T 2qi9_C 177 SALSQQGLAIVMSSHDL 193 (249)
T ss_dssp HHHHHTTCEEEEECSCH
T ss_pred HHHHhCCCEEEEEeCCH
Confidence 34433334455544443
No 26
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.89 E-value=3e-23 Score=181.00 Aligned_cols=143 Identities=10% Similarity=-0.057 Sum_probs=94.8
Q ss_pred cccccCCeEEEEEecCCCCHHHHHHHHHhc--ccCcccEEEEecccCCC-----------CCcccc----------cccc
Q 024413 63 INFKRKPVIIIVVGMAGSGKTTFMHRLVCH--TQSRNIRGYVMNLDPAV-----------MTLPFA----------ANID 119 (268)
Q Consensus 63 ~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~--~~~~~g~i~i~~~~~~~-----------~~~~~~----------~~~~ 119 (268)
...+++|++++|+||||||||||+++|+|+ ++|++|.|+++|.+... ..+++. +++.
T Consensus 23 sl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~ 102 (250)
T 2d2e_A 23 NLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLR 102 (250)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHH
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCCCHHHHHH
Confidence 445899999999999999999999999998 78999999998875421 011111 1111
Q ss_pred h-----h--------hHHHHHHHHHHcCCC-CCCCcccchhh-hcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhh
Q 024413 120 I-----R--------DTIRYKEVMKQFNLG-PNGGILTSLNL-FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSA 184 (268)
Q Consensus 120 ~-----~--------~~~~~~~~l~~~~l~-~~~~~~~~~~~-lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~ 184 (268)
. . ...++.++++.+++. ...... +.. ||||||||++||+|++.+|+++|+|||+..-+.....
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~ 180 (250)
T 2d2e_A 103 LALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRY--LNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALK 180 (250)
T ss_dssp HHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSB--TTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHH
T ss_pred HHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCC--cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHH
Confidence 0 0 023466788899995 433333 788 9999999999999999999999999998754322222
Q ss_pred HHHHHHHHHhccCCcEEEEEEcC
Q 024413 185 SGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 185 ~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
....+.+.++.....+|+..||.
T Consensus 181 ~l~~~l~~l~~~g~tvi~vtHd~ 203 (250)
T 2d2e_A 181 VVARGVNAMRGPNFGALVITHYQ 203 (250)
T ss_dssp HHHHHHHHHCSTTCEEEEECSSS
T ss_pred HHHHHHHHHHhcCCEEEEEecCH
Confidence 22333344433334556655665
No 27
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.88 E-value=1e-22 Score=176.84 Aligned_cols=143 Identities=10% Similarity=-0.036 Sum_probs=98.9
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC----------CCcc---------cccccch--
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV----------MTLP---------FAANIDI-- 120 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~----------~~~~---------~~~~~~~-- 120 (268)
....+++|++++|+||||||||||+++|+|+++|++|.|.++|.+... ..++ ..+++..
T Consensus 21 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~ 100 (243)
T 1mv5_A 21 ISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGL 100 (243)
T ss_dssp EEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHHTTSCT
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCccccccHHHHHhhhc
Confidence 344589999999999999999999999999999999999999865421 0111 1112211
Q ss_pred ---hhHHHHHHHHHHcCCCCCCCcc---------cchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCc-chhhhhhHHH
Q 024413 121 ---RDTIRYKEVMKQFNLGPNGGIL---------TSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQI-EIFTWSASGA 187 (268)
Q Consensus 121 ---~~~~~~~~~l~~~~l~~~~~~~---------~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~-~~~~~~~~~~ 187 (268)
.....+.++++.+++....... ..+..||||||||++||||++.+|+++|+|||+.. |+........
T Consensus 101 ~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~ 180 (243)
T 1mv5_A 101 EGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQK 180 (243)
T ss_dssp TSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHH
T ss_pred cCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHH
Confidence 1234567788888886543221 23578999999999999999999999999999875 4433333333
Q ss_pred HHHHHHhccCCcEEEEEEc
Q 024413 188 IITEAFASTFPTVVTYVVD 206 (268)
Q Consensus 188 ~i~~~~~~~~~d~vv~vvD 206 (268)
.+ ..++ ....+|+..+|
T Consensus 181 ~l-~~~~-~~~tvi~vtH~ 197 (243)
T 1mv5_A 181 AL-DSLM-KGRTTLVIAHR 197 (243)
T ss_dssp HH-HHHH-TTSEEEEECCS
T ss_pred HH-HHhc-CCCEEEEEeCC
Confidence 33 3343 33344444444
No 28
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.88 E-value=1.3e-22 Score=178.19 Aligned_cols=112 Identities=19% Similarity=0.163 Sum_probs=87.7
Q ss_pred cccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCC-------CC-Cccccc--ccchh-----------
Q 024413 63 INFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA-------VM-TLPFAA--NIDIR----------- 121 (268)
Q Consensus 63 ~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~-------~~-~~~~~~--~~~~~----------- 121 (268)
...++ |++++|+||||||||||+++|+|+. |++|.++++|.+.. .. .+++.. .++..
T Consensus 25 sl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l~~tv~enl~~~~~~~~ 102 (263)
T 2pjz_A 25 NLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKG 102 (263)
T ss_dssp EEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEECCGGGSCTTSBHHHHHHHHHHHTC
T ss_pred eEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEEeCCCCccCCcHHHHHHHhhhhcc
Confidence 44588 9999999999999999999999999 99999999886431 11 222211 11111
Q ss_pred -hHHHHHHHHHHcCCC-CCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc
Q 024413 122 -DTIRYKEVMKQFNLG-PNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE 178 (268)
Q Consensus 122 -~~~~~~~~l~~~~l~-~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~ 178 (268)
...++.++++.+++. ...... +.+||||||||++||+|++.+|+++|+|||+..-
T Consensus 103 ~~~~~~~~~l~~~gl~~~~~~~~--~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~L 159 (263)
T 2pjz_A 103 LDRDLFLEMLKALKLGEEILRRK--LYKLSAGQSVLVRTSLALASQPEIVGLDEPFENV 159 (263)
T ss_dssp CCHHHHHHHHHHTTCCGGGGGSB--GGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTC
T ss_pred hHHHHHHHHHHHcCCChhHhcCC--hhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccc
Confidence 134577889999997 554444 8999999999999999999999999999998754
No 29
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.88 E-value=7.7e-23 Score=178.17 Aligned_cols=143 Identities=13% Similarity=0.006 Sum_probs=96.6
Q ss_pred cccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC----------Cc---------ccccccch---
Q 024413 63 INFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM----------TL---------PFAANIDI--- 120 (268)
Q Consensus 63 ~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~----------~~---------~~~~~~~~--- 120 (268)
...+++|++++|+||||||||||+++|+|+++|++|.|+++|.+.... .+ +..+++..
T Consensus 29 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~ 108 (247)
T 2ff7_A 29 NLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP 108 (247)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHHHHTTTCT
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCccccccHHHHHhccCC
Confidence 445899999999999999999999999999999999999998764210 01 11112211
Q ss_pred -hhHHHHHHHHHHcCCCCCCC---------cccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc-hhhhhhHHHHH
Q 024413 121 -RDTIRYKEVMKQFNLGPNGG---------ILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE-IFTWSASGAII 189 (268)
Q Consensus 121 -~~~~~~~~~l~~~~l~~~~~---------~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~-~~~~~~~~~~i 189 (268)
....++.++++.+++..... ....+..||||||||++||||++.+|+++|+|||+..- +........ +
T Consensus 109 ~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~-~ 187 (247)
T 2ff7_A 109 GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR-N 187 (247)
T ss_dssp TCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHH-H
T ss_pred CCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-H
Confidence 12334556666666642211 11236789999999999999999999999999998754 333233333 3
Q ss_pred HHHHhccCCcEEEEEEcC
Q 024413 190 TEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 190 ~~~~~~~~~d~vv~vvD~ 207 (268)
...++ ....+|+..+|.
T Consensus 188 l~~~~-~g~tviivtH~~ 204 (247)
T 2ff7_A 188 MHKIC-KGRTVIIIAHRL 204 (247)
T ss_dssp HHHHH-TTSEEEEECSSG
T ss_pred HHHHc-CCCEEEEEeCCH
Confidence 33333 234555555554
No 30
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.88 E-value=1.9e-22 Score=177.66 Aligned_cols=116 Identities=10% Similarity=-0.068 Sum_probs=86.0
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhc--ccCcccEEEEecccCCC-----------CCcccc----------ccc
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCH--TQSRNIRGYVMNLDPAV-----------MTLPFA----------ANI 118 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~--~~~~~g~i~i~~~~~~~-----------~~~~~~----------~~~ 118 (268)
....+++|++++|+||||||||||+++|+|+ .+|++|.|+++|.+... ..++.. +++
T Consensus 39 vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~ 118 (267)
T 2zu0_C 39 LSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFL 118 (267)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCBHHHHH
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCccccccccHHHHH
Confidence 3445899999999999999999999999998 46899999998865321 001111 011
Q ss_pred ch-h----------------hHHHHHHHHHHcCCCC-CCCcccchh-hhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 119 DI-R----------------DTIRYKEVMKQFNLGP-NGGILTSLN-LFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 119 ~~-~----------------~~~~~~~~l~~~~l~~-~~~~~~~~~-~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
.. . ...++.++++.+++.. ..... +. .||||||||++||+|++.+|+++|+|||+..-+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~--~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD 196 (267)
T 2zu0_C 119 QTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRS--VNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLD 196 (267)
T ss_dssp HHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSB--TTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCC
T ss_pred HHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCC--cccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Confidence 00 0 0134667899999963 33333 65 599999999999999999999999999987543
No 31
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.87 E-value=2.1e-22 Score=177.66 Aligned_cols=116 Identities=15% Similarity=0.087 Sum_probs=84.6
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC----------CCc---------ccccccch--
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV----------MTL---------PFAANIDI-- 120 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~----------~~~---------~~~~~~~~-- 120 (268)
....+++|++++|+||||||||||+++|+|+++|++|.|+++|.+... ..+ +..+++..
T Consensus 38 vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~ 117 (271)
T 2ixe_A 38 LTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGL 117 (271)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHHHHHTTC
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCccccccHHHHHhhhc
Confidence 344589999999999999999999999999999999999998865421 001 11111111
Q ss_pred ---hh-H--------HHHHHHHHHc--CCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 121 ---RD-T--------IRYKEVMKQF--NLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 121 ---~~-~--------~~~~~~l~~~--~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
.. . ..+.++++.+ ++...... .+..|||||+||++||||++.+|+++|+|||+..-+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~--~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD 188 (271)
T 2ixe_A 118 TRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGE--TGNQLSGGQRQAVALARALIRKPRLLILDNATSALD 188 (271)
T ss_dssp SSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCG--GGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCC
T ss_pred ccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcC--CcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCC
Confidence 01 0 1123455666 45443333 388999999999999999999999999999987543
No 32
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.86 E-value=4e-22 Score=171.73 Aligned_cols=117 Identities=19% Similarity=0.133 Sum_probs=81.3
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEeccc------CCCCCcccccccchh---hHHHHHHHHHH
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLD------PAVMTLPFAANIDIR---DTIRYKEVMKQ 132 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~------~~~~~~~~~~~~~~~---~~~~~~~~l~~ 132 (268)
....+++|++++|+||||||||||+++|+|+++|++|.|.++|.- +.....+..+++... ......+.++.
T Consensus 27 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~ 106 (229)
T 2pze_A 27 INFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKA 106 (229)
T ss_dssp EEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCCCSBCHHHHHHTTSCCCHHHHHHHHHH
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCcccCCCHHHHhhccCCcChHHHHHHHHH
Confidence 344589999999999999999999999999999999999887631 100011222222211 11223344444
Q ss_pred cCCCCCC---------CcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc
Q 024413 133 FNLGPNG---------GILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE 178 (268)
Q Consensus 133 ~~l~~~~---------~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~ 178 (268)
+++.... .....+..||||||||++||+|++.+|+++|+|||+..-
T Consensus 107 ~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~L 161 (229)
T 2pze_A 107 CQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYL 161 (229)
T ss_dssp TTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTS
T ss_pred hCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCC
Confidence 4443210 111225789999999999999999999999999998754
No 33
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.85 E-value=5.1e-22 Score=171.92 Aligned_cols=117 Identities=18% Similarity=0.181 Sum_probs=80.9
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecc------cCCCCCcccccccchh---hHHHHHHHHHH
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNL------DPAVMTLPFAANIDIR---DTIRYKEVMKQ 132 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~------~~~~~~~~~~~~~~~~---~~~~~~~~l~~ 132 (268)
....+++|++++|+||||||||||+++|+|+++|++|.|.++|. ++.....+..+++... ......++++.
T Consensus 24 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~ 103 (237)
T 2cbz_A 24 ITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQA 103 (237)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSCCCCSEEHHHHHHTTSCCCTTHHHHHHHH
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCCcCCCcCHHHHhhCccccCHHHHHHHHHH
Confidence 34458999999999999999999999999999999999988763 1111111222222110 01122333333
Q ss_pred cCC------CCCC---CcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc
Q 024413 133 FNL------GPNG---GILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE 178 (268)
Q Consensus 133 ~~l------~~~~---~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~ 178 (268)
+++ .+.+ .....+..||||||||++||||++.+|+++|+|||+..-
T Consensus 104 ~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~L 158 (237)
T 2cbz_A 104 CALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAV 158 (237)
T ss_dssp TTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTS
T ss_pred HhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccc
Confidence 332 2211 122347899999999999999999999999999998754
No 34
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.85 E-value=1.2e-21 Score=171.87 Aligned_cols=144 Identities=13% Similarity=-0.061 Sum_probs=94.1
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC----------CCccc---------ccccch--
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV----------MTLPF---------AANIDI-- 120 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~----------~~~~~---------~~~~~~-- 120 (268)
....+++|++++|+||||||||||+++|+|++++ +|.|+++|.+... ..+++ .+++..
T Consensus 39 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~ 117 (260)
T 2ghi_A 39 INFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGK 117 (260)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCSEEHHHHHHTTC
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccccCHHHHHhccC
Confidence 3445899999999999999999999999999987 8999998865421 01111 111111
Q ss_pred --hhHHHHHHHHHHcCCCCCC---------CcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHH
Q 024413 121 --RDTIRYKEVMKQFNLGPNG---------GILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAII 189 (268)
Q Consensus 121 --~~~~~~~~~l~~~~l~~~~---------~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i 189 (268)
.....+.++++.+++.... .....+..||||||||++||||++.+|+++|+|||+..-+.........+
T Consensus 118 ~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ 197 (260)
T 2ghi_A 118 LDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKA 197 (260)
T ss_dssp TTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHH
Confidence 1223455566666653210 01123678999999999999999999999999999875432222222333
Q ss_pred HHHHhccCCcEEEEEEcC
Q 024413 190 TEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 190 ~~~~~~~~~d~vv~vvD~ 207 (268)
...++. ...+|+..+|.
T Consensus 198 l~~l~~-~~tviivtH~~ 214 (260)
T 2ghi_A 198 VEDLRK-NRTLIIIAHRL 214 (260)
T ss_dssp HHHHTT-TSEEEEECSSG
T ss_pred HHHhcC-CCEEEEEcCCH
Confidence 333332 34555555554
No 35
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.85 E-value=6.1e-22 Score=177.45 Aligned_cols=116 Identities=12% Similarity=0.046 Sum_probs=83.4
Q ss_pred cccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC----------Cccc---------ccccch---
Q 024413 63 INFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM----------TLPF---------AANIDI--- 120 (268)
Q Consensus 63 ~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~----------~~~~---------~~~~~~--- 120 (268)
.+.+++|++++|+||||||||||+++|+|++.|++|.|+++|.+.... .+++ .+|+..
T Consensus 74 sl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~ 153 (306)
T 3nh6_A 74 SFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRV 153 (306)
T ss_dssp EEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTST
T ss_pred eEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcc
Confidence 445899999999999999999999999999999999999999765311 1111 111111
Q ss_pred -hhHHHHHHHHHHcCCCCC---------CCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc
Q 024413 121 -RDTIRYKEVMKQFNLGPN---------GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE 178 (268)
Q Consensus 121 -~~~~~~~~~l~~~~l~~~---------~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~ 178 (268)
.....+.+.++.+++... .........||||||||++||||++.+|+++|+|||+..-
T Consensus 154 ~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~L 221 (306)
T 3nh6_A 154 TAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSAL 221 (306)
T ss_dssp TCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCC
T ss_pred cCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccC
Confidence 112334445555444321 1111225689999999999999999999999999998754
No 36
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.84 E-value=1.9e-21 Score=179.63 Aligned_cols=114 Identities=14% Similarity=0.137 Sum_probs=88.0
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCC----------c---------ccccccch-
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMT----------L---------PFAANIDI- 120 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~----------~---------~~~~~~~~- 120 (268)
...+.+++|++++|+||||||||||+++|+|++. ++|.|+++|.+..... + +..+|+..
T Consensus 39 ~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~~tv~enl~~~ 117 (390)
T 3gd7_A 39 NISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPN 117 (390)
T ss_dssp EEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCSEEHHHHHCTT
T ss_pred ceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCccCHHHHhhhc
Confidence 3344589999999999999999999999999998 8999999997653110 0 11112211
Q ss_pred --hhHHHHHHHHHHcCCCCCCCcccchhh-----------hcHHHHHHHHHHHHHhcCCCEEEEeCCCCc
Q 024413 121 --RDTIRYKEVMKQFNLGPNGGILTSLNL-----------FTTKFDEVISLIERRADHLDYVLVDTPGQI 177 (268)
Q Consensus 121 --~~~~~~~~~l~~~~l~~~~~~~~~~~~-----------lS~G~~qr~~ia~al~~~~~illlDePG~~ 177 (268)
....++.++++.++|....... +.. ||||||||++||||++.+|+++|+|||...
T Consensus 118 ~~~~~~~v~~~l~~~~L~~~~~~~--p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~ 185 (390)
T 3gd7_A 118 AAHSDQEIWKVADEVGLRSVIEQF--PGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAH 185 (390)
T ss_dssp CCSCHHHHHHHHHHTTCHHHHTTS--TTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHH
T ss_pred cccCHHHHHHHHHHhCCHHHHhhc--ccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccC
Confidence 1245677889999987544433 555 999999999999999999999999999764
No 37
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.84 E-value=5.3e-21 Score=183.53 Aligned_cols=112 Identities=19% Similarity=0.114 Sum_probs=85.4
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC--C------Ccccccccch-------hhHHHHHHHH
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV--M------TLPFAANIDI-------RDTIRYKEVM 130 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~--~------~~~~~~~~~~-------~~~~~~~~~l 130 (268)
+++|++++|+||||||||||+++|+|+.+|++|.|.+.+..... . ..+..+++.. .....+.+++
T Consensus 291 i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l 370 (538)
T 3ozx_A 291 AKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVT 370 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTT
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHH
Confidence 68999999999999999999999999999999999876543211 0 0111111110 1123456777
Q ss_pred HHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 131 KQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 131 ~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
+.+++....... +..||||||||++||+|++.+|+++|+|||+..-+
T Consensus 371 ~~~~l~~~~~~~--~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD 417 (538)
T 3ozx_A 371 KRLNLHRLLESN--VNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLD 417 (538)
T ss_dssp TTTTGGGCTTSB--GGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCC
T ss_pred HHcCCHHHhcCC--hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCC
Confidence 888887554444 99999999999999999999999999999988544
No 38
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.84 E-value=9.9e-21 Score=183.92 Aligned_cols=112 Identities=17% Similarity=0.077 Sum_probs=84.3
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEE-------ecccCCCCCcccccccch------hhHHHHHHHHHH
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYV-------MNLDPAVMTLPFAANIDI------RDTIRYKEVMKQ 132 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i-------~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~ 132 (268)
+++|++++|+||||||||||+++|+|+.+|++|.|.+ .+........+..+++.. .....+.++++.
T Consensus 379 v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~ 458 (607)
T 3bk7_A 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKP 458 (607)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHH
Confidence 5799999999999999999999999999999988754 221111111122221111 112346778999
Q ss_pred cCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 133 FNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 133 ~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
+++....... +.+|||||+||++||++++.+|+++|+|||+...+
T Consensus 459 ~~l~~~~~~~--~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD 503 (607)
T 3bk7_A 459 LGIIDLYDRN--VEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLD 503 (607)
T ss_dssp HTCTTTTTSB--GGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCC
T ss_pred cCCchHhcCC--hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCC
Confidence 9997655444 99999999999999999999999999999988544
No 39
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.83 E-value=1.4e-20 Score=180.68 Aligned_cols=112 Identities=17% Similarity=0.086 Sum_probs=82.1
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEE-------ecccCCCCCcccccccch------hhHHHHHHHHHH
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYV-------MNLDPAVMTLPFAANIDI------RDTIRYKEVMKQ 132 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i-------~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~ 132 (268)
+++|++++|+||||||||||+++|+|+.+|++|.|.+ .+........+..+++.. .....+.++++.
T Consensus 309 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~ 388 (538)
T 1yqt_A 309 IKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKP 388 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHH
Confidence 5799999999999999999999999999999987753 221111111111111111 112345667888
Q ss_pred cCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 133 FNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 133 ~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
+++...... .+..||||||||++||++++.+|+++|+|||+..-+
T Consensus 389 ~~l~~~~~~--~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD 433 (538)
T 1yqt_A 389 LGIIDLYDR--EVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLD 433 (538)
T ss_dssp TTCGGGTTS--BGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCC
T ss_pred cCChhhhcC--ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCC
Confidence 888654433 499999999999999999999999999999988543
No 40
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.83 E-value=3.9e-21 Score=171.08 Aligned_cols=118 Identities=19% Similarity=0.115 Sum_probs=80.2
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEeccc------CCCCCcccccccch--hhHHHHHHHHHH
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLD------PAVMTLPFAANIDI--RDTIRYKEVMKQ 132 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~------~~~~~~~~~~~~~~--~~~~~~~~~l~~ 132 (268)
.....+++|++++|+||||||||||+++|+|+++|++|.|+++|.- +.....+..+++.. .....+.+.++.
T Consensus 56 ~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~ 135 (290)
T 2bbs_A 56 DINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPGTIKENIIGVSYDEYRYRSVIKA 135 (290)
T ss_dssp EEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSCCCCSSBHHHHHHTTCCCHHHHHHHHHH
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCCccCcccHHHHhhCcccchHHHHHHHHH
Confidence 3345589999999999999999999999999999999999876521 11111122222210 011223344555
Q ss_pred cCCCCCC---------CcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc
Q 024413 133 FNLGPNG---------GILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE 178 (268)
Q Consensus 133 ~~l~~~~---------~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~ 178 (268)
+++.... .....+..||||||||++||+|++.+|+++|+|||+..-
T Consensus 136 ~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~L 190 (290)
T 2bbs_A 136 CQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYL 190 (290)
T ss_dssp TTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTC
T ss_pred hChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccC
Confidence 5543210 011125789999999999999999999999999998754
No 41
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.82 E-value=4.9e-20 Score=178.95 Aligned_cols=111 Identities=13% Similarity=0.083 Sum_probs=81.1
Q ss_pred cCCeEEEEEecCCCCHHHHHHHHHhcccCcccE-------EEEecccCCCCCcccccccc------hhhHHHHHHHHHHc
Q 024413 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIR-------GYVMNLDPAVMTLPFAANID------IRDTIRYKEVMKQF 133 (268)
Q Consensus 67 ~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~-------i~i~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~ 133 (268)
.+|++++|+||||||||||+++|+|+.+|++|. .++.+........+..+++. ......+.++++.+
T Consensus 376 ~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l 455 (608)
T 3j16_B 376 SDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPL 455 (608)
T ss_dssp CTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHH
T ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHc
Confidence 445899999999999999999999999999885 22222111111111111110 11234567789999
Q ss_pred CCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 134 NLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 134 ~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
++....... +.+|||||+||++||+|++.+|+++|+|||+..-+
T Consensus 456 ~l~~~~~~~--~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD 499 (608)
T 3j16_B 456 RIDDIIDQE--VQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLD 499 (608)
T ss_dssp TSTTTSSSB--SSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCC
T ss_pred CChhhhcCC--hhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCC
Confidence 998665555 99999999999999999999999999999988543
No 42
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.82 E-value=4.2e-20 Score=179.00 Aligned_cols=118 Identities=12% Similarity=0.015 Sum_probs=86.9
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC----------CCc---------ccccccch-
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV----------MTL---------PFAANIDI- 120 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~----------~~~---------~~~~~~~~- 120 (268)
.....+++|++++|+||||||||||+++|+|+++|++|.|.++|.+... ..+ +..+|+..
T Consensus 361 ~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~ 440 (582)
T 3b5x_A 361 HVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYA 440 (582)
T ss_pred cceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhcc
Confidence 3445589999999999999999999999999999999999999876421 011 11122211
Q ss_pred ----hhHHHHHHHHHHcCCCCCCC---------cccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc
Q 024413 121 ----RDTIRYKEVMKQFNLGPNGG---------ILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE 178 (268)
Q Consensus 121 ----~~~~~~~~~l~~~~l~~~~~---------~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~ 178 (268)
.+..++.++++.+++.+... .......||||||||++||||+..+|+++|+|||+..-
T Consensus 441 ~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~L 511 (582)
T 3b5x_A 441 AEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSAL 511 (582)
T ss_pred CCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccC
Confidence 12345666777776643211 11225689999999999999999999999999998754
No 43
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.82 E-value=2.6e-20 Score=178.77 Aligned_cols=126 Identities=14% Similarity=0.087 Sum_probs=88.7
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEE-----------EEecccCC----------------CCCccccccc
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRG-----------YVMNLDPA----------------VMTLPFAANI 118 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i-----------~i~~~~~~----------------~~~~~~~~~~ 118 (268)
.++|++++|+||||||||||+++|+|++.|+.|.+ .+.+.+.. .........+
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKF 101 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTT
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhh
Confidence 67899999999999999999999999999999987 33333221 0001110000
Q ss_pred ---chh-------hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHH
Q 024413 119 ---DIR-------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAI 188 (268)
Q Consensus 119 ---~~~-------~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~ 188 (268)
... ...++.++++.+++....... +.+|||||+||++||+|++.+|+++|+|||+...+.........
T Consensus 102 ~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~--~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~ 179 (538)
T 3ozx_A 102 LKGTVNEILTKIDERGKKDEVKELLNMTNLWNKD--ANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAK 179 (538)
T ss_dssp CCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSB--GGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHH
T ss_pred ccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCC--hhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHH
Confidence 011 122467889999997655544 99999999999999999999999999999987544222233333
Q ss_pred HHHHH
Q 024413 189 ITEAF 193 (268)
Q Consensus 189 i~~~~ 193 (268)
+++.+
T Consensus 180 ~l~~l 184 (538)
T 3ozx_A 180 AIREL 184 (538)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
No 44
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.81 E-value=2.9e-20 Score=178.53 Aligned_cols=140 Identities=12% Similarity=0.088 Sum_probs=92.5
Q ss_pred cccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEE---------EEecccCC----------------CCCcccccc--
Q 024413 65 FKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRG---------YVMNLDPA----------------VMTLPFAAN-- 117 (268)
Q Consensus 65 ~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i---------~i~~~~~~----------------~~~~~~~~~-- 117 (268)
.+++|++++|+||||||||||+++|+|.+.|++|.+ .+.|.+.. .........
T Consensus 43 ~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~ 122 (538)
T 1yqt_A 43 VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAV 122 (538)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSCGGGSGGGC
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhhhhhcchhh
Confidence 378999999999999999999999999999998874 12222110 000000000
Q ss_pred -cchh-------hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHH
Q 024413 118 -IDIR-------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAII 189 (268)
Q Consensus 118 -~~~~-------~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i 189 (268)
.... ...++.++++.+++....... +.+|||||+||++||+|++.+|+++|+|||+...+.........+
T Consensus 123 ~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~--~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~ 200 (538)
T 1yqt_A 123 KGKVIELLKKADETGKLEEVVKALELENVLERE--IQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARA 200 (538)
T ss_dssp CSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSB--GGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHH
T ss_pred hccHHHHHhhhhHHHHHHHHHHHcCCChhhhCC--hhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHH
Confidence 0111 112467899999997655444 999999999999999999999999999999875432222223333
Q ss_pred HHHHhccCCcEEEEEEc
Q 024413 190 TEAFASTFPTVVTYVVD 206 (268)
Q Consensus 190 ~~~~~~~~~d~vv~vvD 206 (268)
.+.++.....+|+..+|
T Consensus 201 L~~l~~~g~tvi~vsHd 217 (538)
T 1yqt_A 201 IRRLSEEGKSVLVVEHD 217 (538)
T ss_dssp HHHHHHTTCEEEEECSC
T ss_pred HHHHHhcCCEEEEEeCC
Confidence 33333333344444444
No 45
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.81 E-value=6.6e-20 Score=178.03 Aligned_cols=118 Identities=16% Similarity=0.048 Sum_probs=87.3
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC----------Cc---------ccccccch--
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM----------TL---------PFAANIDI-- 120 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~----------~~---------~~~~~~~~-- 120 (268)
....+++|++++|+||||||||||+++|+|+++|++|.|.++|.+.... .+ +..+|+..
T Consensus 363 isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~ 442 (595)
T 2yl4_A 363 FSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGA 442 (595)
T ss_dssp EEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTS
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccCCCHHHHHhhcC
Confidence 3445899999999999999999999999999999999999999764210 01 11122211
Q ss_pred -----hhHHHHHHHHHHcCCCCC---------CCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 121 -----RDTIRYKEVMKQFNLGPN---------GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 121 -----~~~~~~~~~l~~~~l~~~---------~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
.+..++.++++.+++.+. .........||||||||++||||+..+|+++|+|||+..-+
T Consensus 443 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD 515 (595)
T 2yl4_A 443 DDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALD 515 (595)
T ss_dssp SSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCC
T ss_pred CCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCC
Confidence 123456777777776321 11111247899999999999999999999999999987543
No 46
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.81 E-value=8.9e-20 Score=176.69 Aligned_cols=144 Identities=13% Similarity=-0.002 Sum_probs=96.4
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC----------Cc---------ccccccch--
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM----------TL---------PFAANIDI-- 120 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~----------~~---------~~~~~~~~-- 120 (268)
....+++|++++|+||||||||||+++|+|+++|++|.|.++|.+.... .+ +..+|+..
T Consensus 362 v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~ 441 (582)
T 3b60_A 362 INLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYAR 441 (582)
T ss_dssp EEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTT
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccC
Confidence 3445899999999999999999999999999999999999998764210 11 11122211
Q ss_pred ---hhHHHHHHHHHHcCCCCCC---------CcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCc-chhhhhhHHH
Q 024413 121 ---RDTIRYKEVMKQFNLGPNG---------GILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQI-EIFTWSASGA 187 (268)
Q Consensus 121 ---~~~~~~~~~l~~~~l~~~~---------~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~-~~~~~~~~~~ 187 (268)
.+..++.++++.+++.... ........||||||||++||||+..+|+++|+|||+.. |+.+......
T Consensus 442 ~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~ 521 (582)
T 3b60_A 442 TEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQA 521 (582)
T ss_dssp TSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHH
Confidence 1234566667766663211 11122568999999999999999999999999999875 4433232222
Q ss_pred HHHHHHhccCCcEEEEEEcC
Q 024413 188 IITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 188 ~i~~~~~~~~~d~vv~vvD~ 207 (268)
.+ +.+.. ...+++..||.
T Consensus 522 ~l-~~~~~-~~tvi~itH~~ 539 (582)
T 3b60_A 522 AL-DELQK-NRTSLVIAHRL 539 (582)
T ss_dssp HH-HHHHT-TSEEEEECSCG
T ss_pred HH-HHHhC-CCEEEEEeccH
Confidence 22 33322 34455555554
No 47
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.81 E-value=2.8e-20 Score=180.78 Aligned_cols=140 Identities=14% Similarity=0.137 Sum_probs=93.2
Q ss_pred cccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEE---------EEecccCC----------------CCCccccccc-
Q 024413 65 FKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRG---------YVMNLDPA----------------VMTLPFAANI- 118 (268)
Q Consensus 65 ~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i---------~i~~~~~~----------------~~~~~~~~~~- 118 (268)
.+++|++++|+||||||||||+++|+|+..|+.|.+ .+.|.+.. ..........
T Consensus 113 ~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 192 (607)
T 3bk7_A 113 IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAV 192 (607)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTC
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeechhhhchhhc
Confidence 378999999999999999999999999999999884 22222110 0000000000
Q ss_pred --chh-------hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHH
Q 024413 119 --DIR-------DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAII 189 (268)
Q Consensus 119 --~~~-------~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i 189 (268)
... ...++.++++.++|....... +.+|||||+||++||+|++.+|+++|+|||+...+.........+
T Consensus 193 ~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~--~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~ 270 (607)
T 3bk7_A 193 KGKVRELLKKVDEVGKFEEVVKELELENVLDRE--LHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARV 270 (607)
T ss_dssp CSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSB--GGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHH
T ss_pred cccHHHHhhhhHHHHHHHHHHHHcCCCchhCCC--hhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHH
Confidence 111 123467899999997654444 999999999999999999999999999999875432222233333
Q ss_pred HHHHhccCCcEEEEEEc
Q 024413 190 TEAFASTFPTVVTYVVD 206 (268)
Q Consensus 190 ~~~~~~~~~d~vv~vvD 206 (268)
++.++.....+|+..||
T Consensus 271 L~~l~~~g~tvIivsHd 287 (607)
T 3bk7_A 271 IRRLANEGKAVLVVEHD 287 (607)
T ss_dssp HHHHHHTTCEEEEECSC
T ss_pred HHHHHhcCCEEEEEecC
Confidence 34443333344444444
No 48
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.80 E-value=5.2e-20 Score=178.74 Aligned_cols=112 Identities=16% Similarity=0.123 Sum_probs=83.7
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEE-----------EecccCCC-------CCc-----c-ccccc---
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGY-----------VMNLDPAV-------MTL-----P-FAANI--- 118 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~-----------i~~~~~~~-------~~~-----~-~~~~~--- 118 (268)
.++|++++|+||||||||||+++|+|+..|+.|.+. +.|.+... ... + +..++
T Consensus 100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRA 179 (608)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHHH
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhhhhhh
Confidence 678999999999999999999999999999999872 22211000 000 0 00000
Q ss_pred ------ch---------hhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 119 ------DI---------RDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 119 ------~~---------~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
.. ....++.++++.++|....... +.+|||||+||++||+|++.+|+++|+|||+...+
T Consensus 180 ~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~--~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD 253 (608)
T 3j16_B 180 IKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRD--IEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLD 253 (608)
T ss_dssp CSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSC--TTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCC
T ss_pred hcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCC--hHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCC
Confidence 00 1235688899999998665544 89999999999999999999999999999987543
No 49
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.80 E-value=1.7e-19 Score=174.66 Aligned_cols=116 Identities=13% Similarity=0.039 Sum_probs=83.9
Q ss_pred cccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC----------CCc---------ccccccch---
Q 024413 63 INFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV----------MTL---------PFAANIDI--- 120 (268)
Q Consensus 63 ~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~----------~~~---------~~~~~~~~--- 120 (268)
...+++|++++|+||||||||||+++|+|+++|++|.|.++|.+... ..+ +..+|+..
T Consensus 361 sl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~ 440 (578)
T 4a82_A 361 NLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRP 440 (578)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCS
T ss_pred EEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCC
Confidence 44589999999999999999999999999999999999999876421 011 12222221
Q ss_pred -hhHHHHHHHHHHcCCCC---------CCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc
Q 024413 121 -RDTIRYKEVMKQFNLGP---------NGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE 178 (268)
Q Consensus 121 -~~~~~~~~~l~~~~l~~---------~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~ 178 (268)
....++.+.++..++.+ ..........||||||||++||||+..+|+++|+|||+..-
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~L 508 (578)
T 4a82_A 441 TATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSAL 508 (578)
T ss_dssp SCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTC
T ss_pred CCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccC
Confidence 11234445555554421 11112235689999999999999999999999999998754
No 50
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.80 E-value=9e-20 Score=177.19 Aligned_cols=145 Identities=13% Similarity=0.054 Sum_probs=92.5
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC----------Cc---------ccccccch-
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM----------TL---------PFAANIDI- 120 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~----------~~---------~~~~~~~~- 120 (268)
.....+++|++++|+||||||||||+++|+|++.|++|.|.++|.+.... .+ +..+|+..
T Consensus 373 ~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~ 452 (598)
T 3qf4_B 373 DITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYG 452 (598)
T ss_dssp SEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSS
T ss_pred ceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcC
Confidence 34455899999999999999999999999999999999999998764211 11 11122211
Q ss_pred ---hhHHHHHHHHHHcCCCCC---------CCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCc-chhhhhhHHH
Q 024413 121 ---RDTIRYKEVMKQFNLGPN---------GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQI-EIFTWSASGA 187 (268)
Q Consensus 121 ---~~~~~~~~~l~~~~l~~~---------~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~-~~~~~~~~~~ 187 (268)
.+...+.+.++..++... .........||||||||++||||+..+|+++|+|||+.. |+.+......
T Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~ 532 (598)
T 3qf4_B 453 NPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQA 532 (598)
T ss_dssp STTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHH
Confidence 011223333333333211 111122467999999999999999999999999999875 4433232323
Q ss_pred HHHHHHhccCCcEEEEEEcC
Q 024413 188 IITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 188 ~i~~~~~~~~~d~vv~vvD~ 207 (268)
.+ ..+. ....+++..||.
T Consensus 533 ~l-~~~~-~~~t~i~itH~l 550 (598)
T 3qf4_B 533 AM-WKLM-EGKTSIIIAHRL 550 (598)
T ss_dssp HH-HHHH-TTSEEEEESCCT
T ss_pred HH-HHHc-CCCEEEEEecCH
Confidence 33 2222 234555544554
No 51
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.79 E-value=3.1e-19 Score=173.11 Aligned_cols=116 Identities=16% Similarity=0.131 Sum_probs=82.9
Q ss_pred cccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC----------Cc---------ccccccch---
Q 024413 63 INFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM----------TL---------PFAANIDI--- 120 (268)
Q Consensus 63 ~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~----------~~---------~~~~~~~~--- 120 (268)
...+++|++++|+||||||||||+++|+|+++|++|.|.++|.+.... .+ +..+|+..
T Consensus 363 sl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~ 442 (587)
T 3qf4_A 363 NFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGRE 442 (587)
T ss_dssp EEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCS
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCC
Confidence 445899999999999999999999999999999999999998765311 11 11122221
Q ss_pred -hhHHHHHHHHHHcCCCC---------CCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc
Q 024413 121 -RDTIRYKEVMKQFNLGP---------NGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE 178 (268)
Q Consensus 121 -~~~~~~~~~l~~~~l~~---------~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~ 178 (268)
....++.+.++..++.+ ..........||||||||++||||+..+|+++|+|||+..-
T Consensus 443 ~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~L 510 (587)
T 3qf4_A 443 DATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSV 510 (587)
T ss_dssp SCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTS
T ss_pred CCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccC
Confidence 11223334444433321 11112336789999999999999999999999999998753
No 52
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.75 E-value=1.1e-17 Score=164.44 Aligned_cols=148 Identities=10% Similarity=0.028 Sum_probs=85.1
Q ss_pred CCcccccccCCeEEEEEecCCCCHHHHH---------------------HHHHhcccCc-------ccEEEEecccCCCC
Q 024413 59 GSSSINFKRKPVIIIVVGMAGSGKTTFM---------------------HRLVCHTQSR-------NIRGYVMNLDPAVM 110 (268)
Q Consensus 59 ~~~~~~~~~~g~~v~iiG~~GsGKSTLl---------------------~~l~g~~~~~-------~g~i~i~~~~~~~~ 110 (268)
.....+.+++|++++|+||||||||||+ +.+.++..|+ .+.+.+.+.+....
T Consensus 34 L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~~~~ 113 (670)
T 3ux8_A 34 LKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTTSRN 113 (670)
T ss_dssp CCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC----
T ss_pred eeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchhhcc
Confidence 4455566899999999999999999998 7888887777 34455544322100
Q ss_pred -----------------------------------Ccccccccchh------h------------HHHHHHHHHHcCCCC
Q 024413 111 -----------------------------------TLPFAANIDIR------D------------TIRYKEVMKQFNLGP 137 (268)
Q Consensus 111 -----------------------------------~~~~~~~~~~~------~------------~~~~~~~l~~~~l~~ 137 (268)
.++..+++... . .....++++.++|..
T Consensus 114 ~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~ 193 (670)
T 3ux8_A 114 PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVGLDY 193 (670)
T ss_dssp -CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHHTTCTT
T ss_pred chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHcCCch
Confidence 00111111110 0 001112477788864
Q ss_pred CCCcccchhhhcHHHHHHHHHHHHHhcCCC--EEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcC
Q 024413 138 NGGILTSLNLFTTKFDEVISLIERRADHLD--YVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 138 ~~~~~~~~~~lS~G~~qr~~ia~al~~~~~--illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
.. ....+.+||||||||++||+|++.+|+ ++|+|||+...+.........+.+.++.....+|+..+|.
T Consensus 194 ~~-~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~ 264 (670)
T 3ux8_A 194 LT-LSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE 264 (670)
T ss_dssp CC-TTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred hh-hcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 32 123389999999999999999999988 9999999875443333344444455544444555555553
No 53
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.74 E-value=2.6e-18 Score=173.46 Aligned_cols=81 Identities=11% Similarity=0.035 Sum_probs=55.5
Q ss_pred HHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEE
Q 024413 124 IRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTY 203 (268)
Q Consensus 124 ~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~ 203 (268)
.++.++++.++|.........+..||||||||++||++++.+|+++|+|||+..-+. .....+.+.++.....+|+.
T Consensus 878 ~~i~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~---~s~~~L~~~L~~~g~tVIiI 954 (986)
T 2iw3_A 878 KEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDR---DSLGALSKALKEFEGGVIII 954 (986)
T ss_dssp HHHHHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCH---HHHHHHHHHHHSCSSEEEEE
T ss_pred HHHHHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCH---HHHHHHHHHHHHhCCEEEEE
Confidence 356778899998743211223889999999999999999999999999999875431 22334445554433444444
Q ss_pred EEcC
Q 024413 204 VVDT 207 (268)
Q Consensus 204 vvD~ 207 (268)
.+|.
T Consensus 955 SHD~ 958 (986)
T 2iw3_A 955 THSA 958 (986)
T ss_dssp CSCH
T ss_pred ECCH
Confidence 4543
No 54
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.71 E-value=2.5e-17 Score=172.41 Aligned_cols=131 Identities=15% Similarity=0.114 Sum_probs=90.7
Q ss_pred cccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC----------Cccc---------ccccch---
Q 024413 63 INFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM----------TLPF---------AANIDI--- 120 (268)
Q Consensus 63 ~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~----------~~~~---------~~~~~~--- 120 (268)
...+++|++++|+|++|||||||+++|.|++.|++|.|.++|.|...- .+++ .+|+..
T Consensus 1099 sl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld 1178 (1321)
T 4f4c_A 1099 SFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLD 1178 (1321)
T ss_dssp EEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSC
T ss_pred eEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCC
Confidence 345899999999999999999999999999999999999999875421 1122 223211
Q ss_pred ---hhHHHHHHHHHHcCCCCC-----CCccc----chhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHH
Q 024413 121 ---RDTIRYKEVMKQFNLGPN-----GGILT----SLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAI 188 (268)
Q Consensus 121 ---~~~~~~~~~l~~~~l~~~-----~~~~~----~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~ 188 (268)
.....+.+.++..++.+. .+... .-..||||||||++||||+..+|+++|||||+..-+ ......
T Consensus 1179 ~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD---~~tE~~ 1255 (1321)
T 4f4c_A 1179 PSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALD---TESEKV 1255 (1321)
T ss_dssp TTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTT---SHHHHH
T ss_pred CCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCC---HHHHHH
Confidence 123345556666655211 11111 124699999999999999999999999999987532 122334
Q ss_pred HHHHHhcc
Q 024413 189 ITEAFAST 196 (268)
Q Consensus 189 i~~~~~~~ 196 (268)
+.+.++..
T Consensus 1256 Iq~~l~~~ 1263 (1321)
T 4f4c_A 1256 VQEALDRA 1263 (1321)
T ss_dssp HHHHHTTT
T ss_pred HHHHHHHH
Confidence 44555443
No 55
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.71 E-value=1.8e-17 Score=173.01 Aligned_cols=117 Identities=13% Similarity=0.039 Sum_probs=81.7
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC----------Cc---------ccccccchh-
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM----------TL---------PFAANIDIR- 121 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~----------~~---------~~~~~~~~~- 121 (268)
....+++|++++|+||||||||||+++|+|++.|++|.|.++|.+.... .+ +..+|+...
T Consensus 409 isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~ 488 (1284)
T 3g5u_A 409 LNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGR 488 (1284)
T ss_dssp EEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHC
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCC
Confidence 3445899999999999999999999999999999999999998764211 11 112222110
Q ss_pred ---hHHHHHHHHHHcCCC---------CCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc
Q 024413 122 ---DTIRYKEVMKQFNLG---------PNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE 178 (268)
Q Consensus 122 ---~~~~~~~~l~~~~l~---------~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~ 178 (268)
....+.+.++..++. ...........||||||||++||||+..+|+++|+|||+..-
T Consensus 489 ~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~L 557 (1284)
T 3g5u_A 489 EDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSAL 557 (1284)
T ss_dssp SSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSS
T ss_pred CCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCC
Confidence 122233333333221 111112225679999999999999999999999999998754
No 56
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.70 E-value=2.2e-17 Score=172.38 Aligned_cols=146 Identities=12% Similarity=0.036 Sum_probs=94.2
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC----------Ccc---------cccccch-
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM----------TLP---------FAANIDI- 120 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~----------~~~---------~~~~~~~- 120 (268)
.....+++|++++|+||||||||||+++|+|++.|++|.|.++|.+.... .++ ..+|+..
T Consensus 1051 ~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~ 1130 (1284)
T 3g5u_A 1051 GLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYG 1130 (1284)
T ss_dssp SCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCC
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhcc
Confidence 44555899999999999999999999999999999999999999775311 111 1122211
Q ss_pred -----hhHHHHHHHHHHcCCCCC---------CCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc-hhhhhhH
Q 024413 121 -----RDTIRYKEVMKQFNLGPN---------GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE-IFTWSAS 185 (268)
Q Consensus 121 -----~~~~~~~~~l~~~~l~~~---------~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~-~~~~~~~ 185 (268)
.....+.+.++..++... .........||||||||++||||+..+|+++|+|||+..- ..+....
T Consensus 1131 ~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i 1210 (1284)
T 3g5u_A 1131 DNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVV 1210 (1284)
T ss_dssp CSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 112233344444333211 1111124579999999999999999999999999998754 3332222
Q ss_pred HHHHHHHHhccCCcEEEEEEcCC
Q 024413 186 GAIITEAFASTFPTVVTYVVDTP 208 (268)
Q Consensus 186 ~~~i~~~~~~~~~d~vv~vvD~~ 208 (268)
...+ +.. .....+++..||-.
T Consensus 1211 ~~~l-~~~-~~~~tvi~isH~l~ 1231 (1284)
T 3g5u_A 1211 QEAL-DKA-REGRTCIVIAHRLS 1231 (1284)
T ss_dssp HHHH-HHH-SSSSCEEEECSCTT
T ss_pred HHHH-HHh-CCCCEEEEEecCHH
Confidence 2222 222 12345555556653
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.70 E-value=1.1e-16 Score=157.35 Aligned_cols=82 Identities=12% Similarity=0.002 Sum_probs=55.2
Q ss_pred HHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCC---CEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEE
Q 024413 125 RYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHL---DYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVV 201 (268)
Q Consensus 125 ~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~---~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~v 201 (268)
+..+.+..+++... .....+.+||||||||++||||++.+| +++|+|||+...+.........+.+.++.....+|
T Consensus 522 ~~~~~l~~~~l~~~-~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi 600 (670)
T 3ux8_A 522 RKLETLYDVGLGYM-KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVL 600 (670)
T ss_dssp HHHHHHHHTTCTTS-BTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHcCCchh-hccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 44567778888642 223348999999999999999999886 49999999875432333333344444544444566
Q ss_pred EEEEcC
Q 024413 202 TYVVDT 207 (268)
Q Consensus 202 v~vvD~ 207 (268)
+..+|.
T Consensus 601 ~vtHd~ 606 (670)
T 3ux8_A 601 VIEHNL 606 (670)
T ss_dssp EECCCH
T ss_pred EEeCCH
Confidence 655665
No 58
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.69 E-value=1.4e-16 Score=166.75 Aligned_cols=146 Identities=12% Similarity=0.068 Sum_probs=96.3
Q ss_pred cccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC----------Cc---------ccccccch---
Q 024413 63 INFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM----------TL---------PFAANIDI--- 120 (268)
Q Consensus 63 ~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~----------~~---------~~~~~~~~--- 120 (268)
...+++|+.++|+||+|||||||++.|.|++.|++|.|.++|.+...- .+ +..+|+..
T Consensus 438 sl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~ 517 (1321)
T 4f4c_A 438 NLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKE 517 (1321)
T ss_dssp EEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCT
T ss_pred EEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcc
Confidence 345899999999999999999999999999999999999999764311 11 11222221
Q ss_pred -hhHHHHHHHHHHcCCCC------CC---CcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCc-chhhhhhHHHHH
Q 024413 121 -RDTIRYKEVMKQFNLGP------NG---GILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQI-EIFTWSASGAII 189 (268)
Q Consensus 121 -~~~~~~~~~l~~~~l~~------~~---~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~-~~~~~~~~~~~i 189 (268)
.+..++.+.++..++.+ ++ .+...-..||||||||++||||+..+|+++|||||+-. |..++......+
T Consensus 518 ~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l 597 (1321)
T 4f4c_A 518 GITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQAL 597 (1321)
T ss_dssp TCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHH
T ss_pred cchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHH
Confidence 12334455555444321 11 11111346999999999999999999999999999875 443333333333
Q ss_pred HHHHhc-------------cCCcEEEEEEcCC
Q 024413 190 TEAFAS-------------TFPTVVTYVVDTP 208 (268)
Q Consensus 190 ~~~~~~-------------~~~d~vv~vvD~~ 208 (268)
.+..+. ..+|.|+++-|++
T Consensus 598 ~~~~~~~T~iiiaHrls~i~~aD~Iivl~~G~ 629 (1321)
T 4f4c_A 598 DKAAKGRTTIIIAHRLSTIRNADLIISCKNGQ 629 (1321)
T ss_dssp HHHHTTSEEEEECSCTTTTTTCSEEEEEETTE
T ss_pred HHHhCCCEEEEEcccHHHHHhCCEEEEeeCCe
Confidence 332221 1367777776653
No 59
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.69 E-value=6.5e-17 Score=163.27 Aligned_cols=115 Identities=13% Similarity=0.078 Sum_probs=77.9
Q ss_pred cccccCCeEEEEEecCCCCHHHHHHHHHhc-cc--C--c-ccEEEEeccc-CCCCCcccccccch--h-hHHHHHHHHHH
Q 024413 63 INFKRKPVIIIVVGMAGSGKTTFMHRLVCH-TQ--S--R-NIRGYVMNLD-PAVMTLPFAANIDI--R-DTIRYKEVMKQ 132 (268)
Q Consensus 63 ~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~-~~--~--~-~g~i~i~~~~-~~~~~~~~~~~~~~--~-~~~~~~~~l~~ 132 (268)
.+.+.+|++++|+||||||||||+++|+|- .. + . .+.+++.+.. ......+..+++.. . ...++.++++.
T Consensus 455 sl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~ 534 (986)
T 2iw3_A 455 QLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIE 534 (986)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHH
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccccccccCCcHHHHHHHhhcCHHHHHHHHHHH
Confidence 344789999999999999999999999952 11 0 1 1223332211 11112222222210 0 14567889999
Q ss_pred cCCCC-CCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcch
Q 024413 133 FNLGP-NGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEI 179 (268)
Q Consensus 133 ~~l~~-~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~ 179 (268)
+++.. ... ..+..||||||||++||++++.+|+++|+|||+...+
T Consensus 535 lgL~~~~~~--~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD 580 (986)
T 2iw3_A 535 FGFTDEMIA--MPISALSGGWKMKLALARAVLRNADILLLDEPTNHLD 580 (986)
T ss_dssp TTCCHHHHH--SBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCC
T ss_pred cCCChhhhc--CCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCC
Confidence 99952 222 2388999999999999999999999999999987543
No 60
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.68 E-value=6.3e-18 Score=159.27 Aligned_cols=135 Identities=13% Similarity=0.050 Sum_probs=87.7
Q ss_pred cccCCeEEEEEecCCCCHHHHHHHHHhcccCccc-E-EEEecccCC-CCCcccc-------cccchh-------------
Q 024413 65 FKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNI-R-GYVMNLDPA-VMTLPFA-------ANIDIR------------- 121 (268)
Q Consensus 65 ~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g-~-i~i~~~~~~-~~~~~~~-------~~~~~~------------- 121 (268)
.+++|++++|+||||||||||+++|+|+..+++| . +++++.... ...+++. ..++..
T Consensus 134 ~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~~l~~~~~~~tv~eni~~~~~~~~~~ 213 (460)
T 2npi_A 134 SNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCISATPISDILDAQLPTWGQSLTSGAT 213 (460)
T ss_dssp HSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCCEEEECCSCCCTTCTTCSCBCBSSCC
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccchhhcccccccchhhhhcccccccCcc
Confidence 3678999999999999999999999999999999 8 999873110 0011111 001111
Q ss_pred hHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHH--HhcCCCE----EEEeC-CCCcchhhhhhHHHHHHHHHh
Q 024413 122 DTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIER--RADHLDY----VLVDT-PGQIEIFTWSASGAIITEAFA 194 (268)
Q Consensus 122 ~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~a--l~~~~~i----lllDe-PG~~~~~~~~~~~~~i~~~~~ 194 (268)
...++.++++.+++.... . +..|||||+||+++|++ ++.+|++ +|+|| |....+.. ...+.+.++
T Consensus 214 ~~~~~~~ll~~~gl~~~~---~-~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~----~~~l~~l~~ 285 (460)
T 2npi_A 214 LLHNKQPMVKNFGLERIN---E-NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN----LAELHHIIE 285 (460)
T ss_dssp SSCCBCCEECCCCSSSGG---G-CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS----CHHHHHHHH
T ss_pred hHHHHHHHHHHhCCCccc---c-hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh----HHHHHHHHH
Confidence 001223344455554322 2 78999999999999999 9999999 99999 76643212 223333333
Q ss_pred ccCCcEEEEEEcC
Q 024413 195 STFPTVVTYVVDT 207 (268)
Q Consensus 195 ~~~~d~vv~vvD~ 207 (268)
....++|+.++|-
T Consensus 286 ~~~~tviiVth~~ 298 (460)
T 2npi_A 286 KLNVNIMLVLCSE 298 (460)
T ss_dssp HTTCCEEEEECCS
T ss_pred HhCCCEEEEEccC
Confidence 3334566655554
No 61
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.66 E-value=3.9e-16 Score=135.36 Aligned_cols=178 Identities=32% Similarity=0.520 Sum_probs=101.7
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccch
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 145 (268)
..+..++++.|+.|+|||||++.|+.... .+.++.+.+.|+......+....++.+.....+.+.. ++.++++.+++.
T Consensus 11 ~~~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 88 (262)
T 1yrb_A 11 GMASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMRE-GYGPNGAIVESY 88 (262)
T ss_dssp TCCCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTT-TCCHHHHHHHHH
T ss_pred CcceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhc-cCCCCCcEEecH
Confidence 45678999999999999999999998777 6667888777765443322222222211112222222 233333222211
Q ss_pred hhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHH
Q 024413 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (268)
Q Consensus 146 ~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~ 225 (268)
..++....+.......+..+.+++|+||||+.++.........+.+.+ .. +++++++|+....+..++.........
T Consensus 89 ~~~~~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~~~~~l~~~~~~~~--~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~ 165 (262)
T 1yrb_A 89 DRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENL--PY-PLVVYISDPEILKKPNDYCFVRFFALL 165 (262)
T ss_dssp HHHHTTHHHHHHHHHHHHHHCSEEEEECCSSHHHHHHSHHHHHHHHTS--SS-CEEEEEECGGGCCSHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHhhcCCEEEEeCCCccchhhhhhhHHHHHHHH--hh-ceEEeccchhhhcCHHHHHHHHHHHHH
Confidence 111100111112222333457999999999987643322222333333 44 899999999766666554432222122
Q ss_pred HHHhhCCCceeeecCCCcCChhh
Q 024413 226 ILYKTRLPLVLAFNKTDVAQHEF 248 (268)
Q Consensus 226 ~l~~~~~p~ilV~NK~Dl~~~~~ 248 (268)
.....++|+++|+||+|+.+..+
T Consensus 166 ~~~~~~~p~~iv~NK~D~~~~~~ 188 (262)
T 1yrb_A 166 IDLRLGATTIPALNKVDLLSEEE 188 (262)
T ss_dssp HHHHHTSCEEEEECCGGGCCHHH
T ss_pred HhcccCCCeEEEEeccccccccc
Confidence 33455799999999999987643
No 62
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.64 E-value=8.4e-18 Score=142.67 Aligned_cols=106 Identities=15% Similarity=0.082 Sum_probs=63.6
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecc--cC-----CCCCcccc--ccc-chhhHHHHHHHHHHcCC
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNL--DP-----AVMTLPFA--ANI-DIRDTIRYKEVMKQFNL 135 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~--~~-----~~~~~~~~--~~~-~~~~~~~~~~~l~~~~l 135 (268)
+++|++++|+||||||||||+++|+|+ +|++|.+..... +. ....+++. +++ ..... ... .....
T Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~~enl~~~~~~-~~~---~~~~~ 93 (208)
T 3b85_A 19 IDTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTLNEKIDPYLRP-LHD---ALRDM 93 (208)
T ss_dssp HHHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC------CTTTHH-HHH---HHTTT
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCHHHHHHHHHHH-HHH---HHHHh
Confidence 467999999999999999999999999 999998853111 10 01111111 122 11000 000 00000
Q ss_pred CCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCc
Q 024413 136 GPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQI 177 (268)
Q Consensus 136 ~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~ 177 (268)
.........+.. ..||+||++||+|++.+|+++|+|||+..
T Consensus 94 ~~~~~~~~~l~~-glGq~qrv~lAraL~~~p~lllLDEPts~ 134 (208)
T 3b85_A 94 VEPEVIPKLMEA-GIVEVAPLAYMRGRTLNDAFVILDEAQNT 134 (208)
T ss_dssp SCTTHHHHHHHT-TSEEEEEGGGGTTCCBCSEEEEECSGGGC
T ss_pred ccHHHHHHHHHh-CCchHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 000000011111 23999999999999999999999999876
No 63
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.63 E-value=1.7e-16 Score=130.09 Aligned_cols=97 Identities=14% Similarity=0.122 Sum_probs=59.8
Q ss_pred cccCCeEEEEEecCCCCHHHHHHH------------HHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHH
Q 024413 65 FKRKPVIIIVVGMAGSGKTTFMHR------------LVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQ 132 (268)
Q Consensus 65 ~~~~g~~v~iiG~~GsGKSTLl~~------------l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 132 (268)
.+++|++++|+||||||||||+++ +.|...++.+...+ ... ..............
T Consensus 5 ~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~~~~~~~~~----------~~~---~~~~~~~~~~~~~~ 71 (171)
T 4gp7_A 5 TIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMSDDENDQTV----------TGA---AFDVLHYIVSKRLQ 71 (171)
T ss_dssp EEESSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHCSSTTCGGG----------HHH---HHHHHHHHHHHHHH
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhcCcccchhh----------HHH---HHHHHHHHHHHHHh
Confidence 478999999999999999999995 44443332211000 000 00000111111112
Q ss_pred cCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCc
Q 024413 133 FNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQI 177 (268)
Q Consensus 133 ~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~ 177 (268)
.+... ........|+|++||++||+++..+|+++++|||...
T Consensus 72 ~g~~~---~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~ 113 (171)
T 4gp7_A 72 LGKLT---VVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKV 113 (171)
T ss_dssp TTCCE---EEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHH
T ss_pred CCCeE---EEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHH
Confidence 23221 1122445799999999999999999999999999753
No 64
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.63 E-value=2.9e-17 Score=144.65 Aligned_cols=99 Identities=14% Similarity=0.072 Sum_probs=55.6
Q ss_pred eEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC-----------------Ccccccccchh-------hHHH
Q 024413 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM-----------------TLPFAANIDIR-------DTIR 125 (268)
Q Consensus 70 ~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~-----------------~~~~~~~~~~~-------~~~~ 125 (268)
..++|+||||||||||+|+|+|...+++|.+.+.|.+.... .++..++.... ....
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~ 82 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP 82 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence 46899999999999999999999999999999887653210 01111111110 0112
Q ss_pred HHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCc
Q 024413 126 YKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQI 177 (268)
Q Consensus 126 ~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~ 177 (268)
+.+++. .. .....+.+|||||+||+++||+++. ++|+|+|+..
T Consensus 83 i~~~~~----~~--~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~g 125 (270)
T 3sop_A 83 IEKYIN----EQ--YEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHS 125 (270)
T ss_dssp HHHHHH----HH--HHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSS
T ss_pred HHHHHH----HH--HHhhhHHhcCcccchhhhhheeeee---eEEEecCCCc
Confidence 222222 00 1112278899999999999999874 9999999764
No 65
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.59 E-value=1.7e-16 Score=131.30 Aligned_cols=122 Identities=14% Similarity=0.154 Sum_probs=67.4
Q ss_pred EEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccC-------CCCCccccc-ccchhhHHHHHHHHHHcCCCCCCCcc
Q 024413 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP-------AVMTLPFAA-NIDIRDTIRYKEVMKQFNLGPNGGIL 142 (268)
Q Consensus 71 ~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~-------~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~ 142 (268)
+++|+||||||||||+++|+|.+.. .+.|.+. ......+.. ...... .++..++........
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i-----~~~g~~~~~~~~~~~~~~ig~~~~~~~~~~-----~~~~~~~~~~~~~~~ 71 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGK-----RAIGFWTEEVRDPETKKRTGFRIITTEGKK-----KIFSSKFFTSKKLVG 71 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG-----GEEEEEEEEEC------CCEEEEEETTCCE-----EEEEETTCCCSSEET
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC-----cCCCEEhhhhccccccceeEEEeecCcHHH-----HHHHhhcCCcccccc
Confidence 5799999999999999999999852 1222110 000000000 000000 000011111111122
Q ss_pred cchhhhcHHHHHHHHHHHH-----HhcCCCEEEEeC--CCCcchhhhhhHHHHHHHHHhccCCcEEEEEE
Q 024413 143 TSLNLFTTKFDEVISLIER-----RADHLDYVLVDT--PGQIEIFTWSASGAIITEAFASTFPTVVTYVV 205 (268)
Q Consensus 143 ~~~~~lS~G~~qr~~ia~a-----l~~~~~illlDe--PG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vv 205 (268)
..+..|||||+||+++|++ +..+|+++|+|| |..... ......+.+.+......+++.++
T Consensus 72 ~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld---~~~~~~l~~~l~~~~~~~i~~~H 138 (178)
T 1ye8_A 72 SYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFS---KKFRDLVRQIMHDPNVNVVATIP 138 (178)
T ss_dssp TEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGC---HHHHHHHHHHHTCTTSEEEEECC
T ss_pred ccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCC---HHHHHHHHHHHhcCCCeEEEEEc
Confidence 3467899999999999996 999999999999 665332 12333454555443223454444
No 66
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.59 E-value=1.8e-15 Score=135.44 Aligned_cols=129 Identities=18% Similarity=0.236 Sum_probs=79.1
Q ss_pred cCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccchh
Q 024413 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (268)
Q Consensus 67 ~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 146 (268)
.+...++|+|.+|||||||+|.|.|.... .....+..+...+. ....
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~~~~------------i~s~~~~tT~~~~~------------------~~~~--- 54 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGTKVS------------IISPKAGTTRMRVL------------------GVKN--- 54 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCS------------CCCSSSCCCCSCEE------------------EEEE---
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCcc------------ccCCCCCceeeEEE------------------EEEe---
Confidence 34578999999999999999999986543 11122222110000 0000
Q ss_pred hhcHHHHHHHHHHHHHhc-CCCEEEEeCCCCcchhhhhhHHHHHHHHHh--ccCCcEEEEEEcCCCcCCchhhHHHHHHH
Q 024413 147 LFTTKFDEVISLIERRAD-HLDYVLVDTPGQIEIFTWSASGAIITEAFA--STFPTVVTYVVDTPRSANPMTFMSNMLYA 223 (268)
Q Consensus 147 ~lS~G~~qr~~ia~al~~-~~~illlDePG~~~~~~~~~~~~~i~~~~~--~~~~d~vv~vvD~~~~~~~~~~~~~~~~~ 223 (268)
.. +.+++|+||||+.++.........+..... ...+|++++|+|+.......+.. ..
T Consensus 55 ----------------~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~----~~ 114 (308)
T 3iev_A 55 ----------------IPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEE----IY 114 (308)
T ss_dssp ----------------ETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHH----HH
T ss_pred ----------------cCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHH----HH
Confidence 11 447999999999876421222222222221 13479999999998776655421 11
Q ss_pred HHHHHhhCCCceeeecCCCcC-Chhh
Q 024413 224 CSILYKTRLPLVLAFNKTDVA-QHEF 248 (268)
Q Consensus 224 ~~~l~~~~~p~ilV~NK~Dl~-~~~~ 248 (268)
+..+...+.|+++|+||+|+. +.+.
T Consensus 115 ~~~l~~~~~pvilV~NK~Dl~~~~~~ 140 (308)
T 3iev_A 115 QNFIKPLNKPVIVVINKIDKIGPAKN 140 (308)
T ss_dssp HHHTGGGCCCEEEEEECGGGSSSGGG
T ss_pred HHHHHhcCCCEEEEEECccCCCCHHH
Confidence 244556689999999999998 4443
No 67
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.58 E-value=7.6e-15 Score=131.08 Aligned_cols=123 Identities=26% Similarity=0.374 Sum_probs=77.1
Q ss_pred eEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccchhhhc
Q 024413 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (268)
Q Consensus 70 ~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~lS 149 (268)
..++|+|.+|+|||||+|.|+|.... .....+.++...+. ...
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~~~------------ivs~~~~tTr~~i~------------------~i~------- 50 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVKVA------------PISPRPQTTRKRLR------------------GIL------- 50 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCS------------CCCSSSCCCCSCEE------------------EEE-------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcee------------eecCCCCceeEEEE------------------EEE-------
Confidence 46899999999999999999986543 11112222100000 000
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHH--hccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHH
Q 024413 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAF--ASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (268)
Q Consensus 150 ~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~--~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l 227 (268)
...+.++.|+||||+.++.. .....+.... ....+|++++|+|+...++..+.+ .+..+
T Consensus 51 ------------~~~~~~l~l~DTpG~~~~~~--~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~-----i~~~l 111 (301)
T 1wf3_A 51 ------------TEGRRQIVFVDTPGLHKPMD--ALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDEL-----VARAL 111 (301)
T ss_dssp ------------EETTEEEEEEECCCCCCCCS--HHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHH-----HHHHH
T ss_pred ------------EeCCcEEEEecCccccchhh--HHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHH-----HHHHH
Confidence 01245799999999987532 2222222222 124589999999998776655422 13445
Q ss_pred Hhh--CCCceeeecCCCcCChhh
Q 024413 228 YKT--RLPLVLAFNKTDVAQHEF 248 (268)
Q Consensus 228 ~~~--~~p~ilV~NK~Dl~~~~~ 248 (268)
... +.|+++|+||+|+.++++
T Consensus 112 ~~~~~~~p~ilV~NK~Dl~~~~~ 134 (301)
T 1wf3_A 112 KPLVGKVPILLVGNKLDAAKYPE 134 (301)
T ss_dssp GGGTTTSCEEEEEECGGGCSSHH
T ss_pred HhhcCCCCEEEEEECcccCCchH
Confidence 555 799999999999987654
No 68
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.57 E-value=4.3e-15 Score=148.48 Aligned_cols=82 Identities=11% Similarity=-0.043 Sum_probs=56.6
Q ss_pred HHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcC---CCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEE
Q 024413 125 RYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADH---LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVV 201 (268)
Q Consensus 125 ~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~---~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~v 201 (268)
++.++++.++|... .....+..|||||+||+.||++++.+ |+++|||||+..-..........++..++.....+|
T Consensus 709 ~~~~~L~~~gL~~~-~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVI 787 (842)
T 2vf7_A 709 RALDTLREVGLGYL-RLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVI 787 (842)
T ss_dssp HHHHHHHHTTCTTS-BTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHcCCCcc-cccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 45678899999753 12234899999999999999999996 699999999885443333333344444444444555
Q ss_pred EEEEcC
Q 024413 202 TYVVDT 207 (268)
Q Consensus 202 v~vvD~ 207 (268)
+..+|.
T Consensus 788 visHdl 793 (842)
T 2vf7_A 788 AVEHKM 793 (842)
T ss_dssp EECCCH
T ss_pred EEcCCH
Confidence 555554
No 69
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.56 E-value=1.7e-16 Score=142.55 Aligned_cols=109 Identities=13% Similarity=0.093 Sum_probs=80.1
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCccc---EEEEecccCCCCCcccccccc---------hhhHHHHHHHHHHc
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNI---RGYVMNLDPAVMTLPFAANID---------IRDTIRYKEVMKQF 133 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g---~i~i~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~~ 133 (268)
.++|++++|+||||||||||+++|+|++.+..| ..++.+.+..... +..+++. ..+...+.++++.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~~~~~-t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l 165 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYPN-AELQRRNLMHRKGFPESYNRRALMRFVTSV 165 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGGBCCH-HHHHHTTCTTCTTSGGGBCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCccCCcc-cHHHHHHHHHhcCCChHHHHHHHHHHHHHh
Confidence 678999999999999999999999999988754 4455554433221 1111111 12345677788887
Q ss_pred CCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcc
Q 024413 134 NLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIE 178 (268)
Q Consensus 134 ~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~ 178 (268)
+ ...... .+..|||||+||+++|++++.+|+++|+|||....
T Consensus 166 ~-~~~~~~--~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~ 207 (312)
T 3aez_A 166 K-SGSDYA--CAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQ 207 (312)
T ss_dssp H-TTCSCE--EEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTC
T ss_pred C-CCcccC--CcccCChhhhhhhhhHHHhccCCCEEEECCccccC
Confidence 7 333223 37799999999999999999999999999998764
No 70
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.55 E-value=7.8e-15 Score=118.53 Aligned_cols=75 Identities=27% Similarity=0.326 Sum_probs=46.7
Q ss_pred CCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeecCCCcC
Q 024413 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA 244 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK~Dl~ 244 (268)
+..+.++||||+.++............+++...++++++++|+... ... ......+...++|+++|+||+|+.
T Consensus 49 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~---~~~----~~~~~~~~~~~~p~ilv~nK~Dl~ 121 (165)
T 2wji_A 49 GEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL---ERN----LYLTLQLMEMGANLLLALNKMDLA 121 (165)
T ss_dssp TEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCH---HHH----HHHHHHHHHTTCCEEEEEECHHHH
T ss_pred CcEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCch---hHh----HHHHHHHHhcCCCEEEEEEchHhc
Confidence 3468999999998753222112222333443468999999999642 111 111233344689999999999986
Q ss_pred Ch
Q 024413 245 QH 246 (268)
Q Consensus 245 ~~ 246 (268)
..
T Consensus 122 ~~ 123 (165)
T 2wji_A 122 KS 123 (165)
T ss_dssp HH
T ss_pred cc
Confidence 54
No 71
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.53 E-value=3.1e-14 Score=143.08 Aligned_cols=81 Identities=14% Similarity=0.015 Sum_probs=54.8
Q ss_pred HHHHHHHHcCCCC-CCCcccchhhhcHHHHHHHHHHHHHhcCC---CEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcE
Q 024413 125 RYKEVMKQFNLGP-NGGILTSLNLFTTKFDEVISLIERRADHL---DYVLVDTPGQIEIFTWSASGAIITEAFASTFPTV 200 (268)
Q Consensus 125 ~~~~~l~~~~l~~-~~~~~~~~~~lS~G~~qr~~ia~al~~~~---~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~ 200 (268)
+..++++.++|.. ..... +.+|||||+||++||++++.+| +++|||||+.............++..++.....+
T Consensus 824 ~~~~~L~~~gL~~~~l~~~--~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TV 901 (972)
T 2r6f_A 824 RKLETLYDVGLGYMKLGQP--ATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTV 901 (972)
T ss_dssp HHHHHHHHTTCSSSBTTCC--GGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHcCCCcccccCc--hhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEE
Confidence 3456888999975 33333 8999999999999999999764 9999999988543332333333334444444455
Q ss_pred EEEEEcC
Q 024413 201 VTYVVDT 207 (268)
Q Consensus 201 vv~vvD~ 207 (268)
|+..+|.
T Consensus 902 IvisHdl 908 (972)
T 2r6f_A 902 LVIEHNL 908 (972)
T ss_dssp EEECCCH
T ss_pred EEEcCCH
Confidence 5554554
No 72
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.53 E-value=1.9e-14 Score=133.09 Aligned_cols=32 Identities=9% Similarity=-0.235 Sum_probs=29.5
Q ss_pred hcHHHHHHHHHHHHHhcCC--CEEEEeCCCCcch
Q 024413 148 FTTKFDEVISLIERRADHL--DYVLVDTPGQIEI 179 (268)
Q Consensus 148 lS~G~~qr~~ia~al~~~~--~illlDePG~~~~ 179 (268)
|||||+||++||++++.+| +++|||||+..-.
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD 329 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIG 329 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCC
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCC
Confidence 6999999999999999999 9999999987543
No 73
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.51 E-value=5.3e-14 Score=141.70 Aligned_cols=82 Identities=13% Similarity=0.045 Sum_probs=54.5
Q ss_pred HHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCC---CEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEE
Q 024413 125 RYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHL---DYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVV 201 (268)
Q Consensus 125 ~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~---~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~v 201 (268)
+..++++.++|... .....+.+|||||+||++||++|+.+| +++|+|||+.............+...+......+|
T Consensus 784 ~~~~~L~~vGL~~~-~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVI 862 (916)
T 3pih_A 784 RTLQVLHDVGLGYV-KLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVI 862 (916)
T ss_dssp HHHHHHHHTTGGGS-BTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHcCCchh-hccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEE
Confidence 45667888888642 223347899999999999999998765 79999999875433333333333444444444555
Q ss_pred EEEEcC
Q 024413 202 TYVVDT 207 (268)
Q Consensus 202 v~vvD~ 207 (268)
+..||.
T Consensus 863 vI~HdL 868 (916)
T 3pih_A 863 VIEHNL 868 (916)
T ss_dssp EECCCH
T ss_pred EEeCCH
Confidence 555554
No 74
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.51 E-value=1.1e-13 Score=109.95 Aligned_cols=75 Identities=23% Similarity=0.296 Sum_probs=47.8
Q ss_pred CCCEEEEeCCCCcchhhhhh-HHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeecCCCc
Q 024413 165 HLDYVLVDTPGQIEIFTWSA-SGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDV 243 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~~-~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK~Dl 243 (268)
+.++.|+|+||+........ ........ ...+|++++++|+...+...+.. ....+...+.|+++|+||+|+
T Consensus 48 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~--~~~~~~~i~v~d~~~~~~~~~~~-----~~~~~~~~~~p~ilv~nK~Dl 120 (161)
T 2dyk_A 48 RGRFLLVDTGGLWSGDKWEKKIQEKVDRA--LEDAEVVLFAVDGRAELTQADYE-----VAEYLRRKGKPVILVATKVDD 120 (161)
T ss_dssp TEEEEEEECGGGCSSSSCCHHHHHHHHHH--TTTCSEEEEEEESSSCCCHHHHH-----HHHHHHHHTCCEEEEEECCCS
T ss_pred CceEEEEECCCCCCccchHHHHHHHHHHH--HHhCCEEEEEEECCCcccHhHHH-----HHHHHHhcCCCEEEEEECccc
Confidence 34689999999976421000 11111111 24579999999998765544321 123444568999999999999
Q ss_pred CCh
Q 024413 244 AQH 246 (268)
Q Consensus 244 ~~~ 246 (268)
.+.
T Consensus 121 ~~~ 123 (161)
T 2dyk_A 121 PKH 123 (161)
T ss_dssp GGG
T ss_pred ccc
Confidence 865
No 75
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.51 E-value=9.9e-15 Score=127.96 Aligned_cols=76 Identities=20% Similarity=0.312 Sum_probs=50.7
Q ss_pred CCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhC-CCceeeecCCCc
Q 024413 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTR-LPLVLAFNKTDV 243 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~-~p~ilV~NK~Dl 243 (268)
+..+.|+|+||+..+............++....+|++++|+|+.... . .+..+..+...+ +|+++|+||+|+
T Consensus 49 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~---~----~~~~~~~~~~~~~~p~ilv~NK~Dl 121 (271)
T 3k53_A 49 EKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCLM---R----NLFLTLELFEMEVKNIILVLNKFDL 121 (271)
T ss_dssp TEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGHH---H----HHHHHHHHHHTTCCSEEEEEECHHH
T ss_pred CceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcch---h----hHHHHHHHHhcCCCCEEEEEEChhc
Confidence 44689999999987644433333344445556789999999996531 1 112223444556 999999999998
Q ss_pred CChh
Q 024413 244 AQHE 247 (268)
Q Consensus 244 ~~~~ 247 (268)
.+.+
T Consensus 122 ~~~~ 125 (271)
T 3k53_A 122 LKKK 125 (271)
T ss_dssp HHHH
T ss_pred Cccc
Confidence 6543
No 76
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.51 E-value=4.6e-14 Score=142.25 Aligned_cols=80 Identities=13% Similarity=0.065 Sum_probs=53.9
Q ss_pred HHHHHHHcCCCC-CCCcccchhhhcHHHHHHHHHHHHHhcCC---CEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEE
Q 024413 126 YKEVMKQFNLGP-NGGILTSLNLFTTKFDEVISLIERRADHL---DYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVV 201 (268)
Q Consensus 126 ~~~~l~~~~l~~-~~~~~~~~~~lS~G~~qr~~ia~al~~~~---~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~v 201 (268)
..++++.++|.. .... .+..|||||+||++||++++.+| +++|||||+.............++..++.....+|
T Consensus 843 ~~~~L~~lgL~~~~l~~--~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVI 920 (993)
T 2ygr_A 843 YLRTLVDVGLGYVRLGQ--PAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVI 920 (993)
T ss_dssp HHHHHHHTTGGGSBTTC--CGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHcCCCcccccC--ccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 456788888875 3333 38999999999999999999764 99999999885443323333333344444444555
Q ss_pred EEEEcC
Q 024413 202 TYVVDT 207 (268)
Q Consensus 202 v~vvD~ 207 (268)
+..+|.
T Consensus 921 visHdl 926 (993)
T 2ygr_A 921 VIEHNL 926 (993)
T ss_dssp EECCCH
T ss_pred EEcCCH
Confidence 554554
No 77
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.50 E-value=6.8e-15 Score=131.29 Aligned_cols=121 Identities=28% Similarity=0.336 Sum_probs=72.8
Q ss_pred CCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccchhh
Q 024413 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (268)
Q Consensus 68 ~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 147 (268)
++.+++|+|++|||||||+|.|+|.... + ....+..+..... +..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~------i------~s~~~~tTr~~~~------------------gi~----- 51 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKIS------I------TSRKAQTTRHRIV------------------GIH----- 51 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEE------E------CCCCSSCCSSCEE------------------EEE-----
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCcc------c------cCCCCCcceeeEE------------------EEE-----
Confidence 3457999999999999999999996432 1 1111111100000 000
Q ss_pred hcHHHHHHHHHHHHHhcCCCEEEEeCCCCc-chhhhhhHHHHHHHHHhc--cCCcEEEEEEcCCCcCCchhhHHHHHHHH
Q 024413 148 FTTKFDEVISLIERRADHLDYVLVDTPGQI-EIFTWSASGAIITEAFAS--TFPTVVTYVVDTPRSANPMTFMSNMLYAC 224 (268)
Q Consensus 148 lS~G~~qr~~ia~al~~~~~illlDePG~~-~~~~~~~~~~~i~~~~~~--~~~d~vv~vvD~~~~~~~~~~~~~~~~~~ 224 (268)
...+.++.++||||+. .+.. .....+...... ..+|++++|+|+.. ++..+.. .+
T Consensus 52 --------------~~~~~~i~~iDTpG~~~~~~~--~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~-----i~ 109 (301)
T 1ega_A 52 --------------TEGAYQAIYVDTPGLHMEEKR--AINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEM-----VL 109 (301)
T ss_dssp --------------EETTEEEEEESSSSCCHHHHH--HHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHH-----HH
T ss_pred --------------EECCeeEEEEECcCCCccchh--hHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHHH-----HH
Confidence 0124478999999997 4321 111111111111 34699999999976 6655432 13
Q ss_pred HHHHhhCCCceeeecCCCcCC
Q 024413 225 SILYKTRLPLVLAFNKTDVAQ 245 (268)
Q Consensus 225 ~~l~~~~~p~ilV~NK~Dl~~ 245 (268)
..+...+.|.++|+||+|+..
T Consensus 110 ~~l~~~~~P~ilvlNK~D~~~ 130 (301)
T 1ega_A 110 NKLREGKAPVILAVNKVDNVQ 130 (301)
T ss_dssp HHHHSSSSCEEEEEESTTTCC
T ss_pred HHHHhcCCCEEEEEECcccCc
Confidence 445556899999999999987
No 78
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.50 E-value=2.4e-14 Score=116.76 Aligned_cols=124 Identities=18% Similarity=0.247 Sum_probs=69.2
Q ss_pred cCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccchh
Q 024413 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (268)
Q Consensus 67 ~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 146 (268)
+++..++|+|++|+|||||+|.|++...+. ....+... .+... ....
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~~~------------~~~~~~~t-~~~~~----------------~~~~---- 48 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGREAAI------------VTDIAGTT-RDVLR----------------EHIH---- 48 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSCCSC------------CCSSTTCC-CSCEE----------------EEEE----
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcce------------eeCCCCce-eceee----------------EEEE----
Confidence 357889999999999999999999865331 11111110 00000 0000
Q ss_pred hhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHH-hccCCcEEEEEEcCCCcCCchhhHHHHHHHHH
Q 024413 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAF-ASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (268)
Q Consensus 147 ~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~-~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~ 225 (268)
..+.++.++||||+.++..... ...+...+ ....+|++++|+|+......... .. +.
T Consensus 49 ----------------~~~~~~~l~Dt~G~~~~~~~~~-~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~--~~---~~ 106 (172)
T 2gj8_A 49 ----------------IDGMPLHIIDTAGLREASDEVE-RIGIERAWQEIEQADRVLFMVDGTTTDAVDPA--EI---WP 106 (172)
T ss_dssp ----------------ETTEEEEEEECCCCSCCSSHHH-HHHHHHHHHHHHTCSEEEEEEETTTCCCCSHH--HH---CH
T ss_pred ----------------ECCeEEEEEECCCcccchhHHH-HHHHHHHHHHHHhCCEEEEEEECCCCCCHHHH--HH---HH
Confidence 1133589999999976421111 11111111 12457999999999765443221 00 11
Q ss_pred HHH---hhCCCceeeecCCCcCC
Q 024413 226 ILY---KTRLPLVLAFNKTDVAQ 245 (268)
Q Consensus 226 ~l~---~~~~p~ilV~NK~Dl~~ 245 (268)
.+. ..++|+++|+||+|+..
T Consensus 107 ~~~~~~~~~~p~ilv~NK~Dl~~ 129 (172)
T 2gj8_A 107 EFIARLPAKLPITVVRNKADITG 129 (172)
T ss_dssp HHHHHSCTTCCEEEEEECHHHHC
T ss_pred HHHHhcccCCCEEEEEECccCCc
Confidence 222 23689999999999964
No 79
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.50 E-value=2.3e-13 Score=114.66 Aligned_cols=80 Identities=14% Similarity=0.046 Sum_probs=53.1
Q ss_pred CCCEEEEeCCCCcchhhh----hhHHHHHHHHHhc-cCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeec
Q 024413 165 HLDYVLVDTPGQIEIFTW----SASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFN 239 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~----~~~~~~i~~~~~~-~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~N 239 (268)
+..+.|+||||+.+.... ......+..+++. ..+|++++|+|+...+...+.. ....+...++|+++|+|
T Consensus 78 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~-----~~~~l~~~~~p~i~v~n 152 (223)
T 4dhe_A 78 EPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRR-----MIEWFAPTGKPIHSLLT 152 (223)
T ss_dssp SCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-----HHHHHGGGCCCEEEEEE
T ss_pred CCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHH-----HHHHHHhcCCCEEEEEe
Confidence 468999999997653111 1122334444443 3368999999998765544321 13555567899999999
Q ss_pred CCCcCChhhh
Q 024413 240 KTDVAQHEFA 249 (268)
Q Consensus 240 K~Dl~~~~~~ 249 (268)
|+|+.+.++.
T Consensus 153 K~Dl~~~~~~ 162 (223)
T 4dhe_A 153 KCDKLTRQES 162 (223)
T ss_dssp CGGGSCHHHH
T ss_pred ccccCChhhH
Confidence 9999886653
No 80
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.49 E-value=4.8e-14 Score=127.46 Aligned_cols=109 Identities=16% Similarity=0.105 Sum_probs=77.1
Q ss_pred cccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccc
Q 024413 65 FKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTS 144 (268)
Q Consensus 65 ~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 144 (268)
.+++|++++|+||||||||||+++|+|++.+++|.+.+.+.+... .+.. + ..
T Consensus 167 ~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~--~~~~-----~------------------~~--- 218 (330)
T 2pt7_A 167 GIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIV--FKHH-----K------------------NY--- 218 (330)
T ss_dssp HHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCC--CSSC-----S------------------SE---
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccc--cccc-----h------------------hE---
Confidence 367899999999999999999999999999999999998754211 1100 0 00
Q ss_pred hhhhc-HHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCC
Q 024413 145 LNLFT-TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTP 208 (268)
Q Consensus 145 ~~~lS-~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~ 208 (268)
+..++ |||+||+++++|+..+|+++|+|||.-.+ .. ...+.+......+++..|+.+
T Consensus 219 i~~~~ggg~~~r~~la~aL~~~p~ilildE~~~~e------~~-~~l~~~~~g~~tvi~t~H~~~ 276 (330)
T 2pt7_A 219 TQLFFGGNITSADCLKSCLRMRPDRIILGELRSSE------AY-DFYNVLCSGHKGTLTTLHAGS 276 (330)
T ss_dssp EEEECBTTBCHHHHHHHHTTSCCSEEEECCCCSTH------HH-HHHHHHHTTCCCEEEEEECSS
T ss_pred EEEEeCCChhHHHHHHHHhhhCCCEEEEcCCChHH------HH-HHHHHHhcCCCEEEEEEcccH
Confidence 00111 79999999999999999999999998622 11 233344333234666666653
No 81
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.49 E-value=4.1e-14 Score=123.43 Aligned_cols=76 Identities=24% Similarity=0.308 Sum_probs=50.2
Q ss_pred CCCEEEEeCCCCcchhhh----hhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeecC
Q 024413 165 HLDYVLVDTPGQIEIFTW----SASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNK 240 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~----~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK 240 (268)
+.++.|+|+||+..+... .........++....+|++++|+|+... .. .......+...++|+++|+||
T Consensus 47 ~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~---~~----~~~l~~~l~~~~~pvilv~NK 119 (256)
T 3iby_A 47 EHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHL---ER----HLYLTSQLFELGKPVVVALNM 119 (256)
T ss_dssp TEEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGH---HH----HHHHHHHHTTSCSCEEEEEEC
T ss_pred CeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCc---hh----HHHHHHHHHHcCCCEEEEEEC
Confidence 447899999999776432 2222233333444668999999999651 11 122245566678999999999
Q ss_pred CCcCChh
Q 024413 241 TDVAQHE 247 (268)
Q Consensus 241 ~Dl~~~~ 247 (268)
+|+...+
T Consensus 120 ~Dl~~~~ 126 (256)
T 3iby_A 120 MDIAEHR 126 (256)
T ss_dssp HHHHHHT
T ss_pred hhcCCcC
Confidence 9997654
No 82
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.49 E-value=6.9e-14 Score=126.75 Aligned_cols=153 Identities=16% Similarity=0.139 Sum_probs=85.9
Q ss_pred cccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccc
Q 024413 65 FKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTS 144 (268)
Q Consensus 65 ~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 144 (268)
.+.+|.+++|+|+||||||||+|+|+|+..+++|.+.+.+.++....... .....+. ++..+.+ .++...+..
T Consensus 51 ~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~-~~~~~~~--~i~~v~q----~~~~~~~~~ 123 (337)
T 2qm8_A 51 QTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGG-SILGDKT--RMARLAI----DRNAFIRPS 123 (337)
T ss_dssp GCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCC-CSSCCGG--GSTTGGG----CTTEEEECC
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCccccccc-chHHHhh--hheeecc----CcccccccC
Confidence 36889999999999999999999999999999999999988764221100 0000000 0000000 000010000
Q ss_pred h--hhhcHHHHHHH--HHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHH
Q 024413 145 L--NLFTTKFDEVI--SLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNM 220 (268)
Q Consensus 145 ~--~~lS~G~~qr~--~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~ 220 (268)
+ ..| ||.-+.. .+...-..+.+++|+||||+.+... .+ ...+|++++++|+...........
T Consensus 124 ~~~~~l-~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~------~v-----~~~~d~vl~v~d~~~~~~~~~i~~-- 189 (337)
T 2qm8_A 124 PSSGTL-GGVAAKTRETMLLCEAAGFDVILVETVGVGQSET------AV-----ADLTDFFLVLMLPGAGDELQGIKK-- 189 (337)
T ss_dssp CCCSSH-HHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHH------HH-----HTTSSEEEEEECSCC------CCT--
T ss_pred cccccc-cchHHHHHHHHHHHhcCCCCEEEEECCCCCcchh------hH-----HhhCCEEEEEEcCCCcccHHHHHH--
Confidence 0 011 1222221 1112224588999999999976411 11 245899999999853321110100
Q ss_pred HHHHHHHHhhCCCceeeecCCCcCC
Q 024413 221 LYACSILYKTRLPLVLAFNKTDVAQ 245 (268)
Q Consensus 221 ~~~~~~l~~~~~p~ilV~NK~Dl~~ 245 (268)
. ..+.|.++|+||+|+..
T Consensus 190 -----~--i~~~~~ivvlNK~Dl~~ 207 (337)
T 2qm8_A 190 -----G--IFELADMIAVNKADDGD 207 (337)
T ss_dssp -----T--HHHHCSEEEEECCSTTC
T ss_pred -----H--HhccccEEEEEchhccC
Confidence 0 11357899999999765
No 83
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.48 E-value=4.1e-14 Score=124.48 Aligned_cols=76 Identities=25% Similarity=0.320 Sum_probs=49.6
Q ss_pred CCCEEEEeCCCCcchhhh---hhHHHHHH-HHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeecC
Q 024413 165 HLDYVLVDTPGQIEIFTW---SASGAIIT-EAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNK 240 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~---~~~~~~i~-~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK 240 (268)
+.++.|+|+||+.++... ......+. .++....+|++++|+|+... .. .......+...++|+++|+||
T Consensus 49 ~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~---~~----~~~~~~~l~~~~~p~ivv~NK 121 (274)
T 3i8s_A 49 DHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNL---ER----NLYLTLQLLELGIPCIVALNM 121 (274)
T ss_dssp SCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGH---HH----HHHHHHHHHHHTCCEEEEEEC
T ss_pred CCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCCh---HH----HHHHHHHHHhcCCCEEEEEEC
Confidence 457899999999876421 11222233 33334678999999999651 11 122234555678999999999
Q ss_pred CCcCChh
Q 024413 241 TDVAQHE 247 (268)
Q Consensus 241 ~Dl~~~~ 247 (268)
+|+.+.+
T Consensus 122 ~Dl~~~~ 128 (274)
T 3i8s_A 122 LDIAEKQ 128 (274)
T ss_dssp HHHHHHT
T ss_pred ccchhhh
Confidence 9987643
No 84
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.48 E-value=1.4e-14 Score=115.54 Aligned_cols=74 Identities=12% Similarity=0.042 Sum_probs=42.2
Q ss_pred CEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeecCCCcCCh
Q 024413 167 DYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQH 246 (268)
Q Consensus 167 ~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK~Dl~~~ 246 (268)
.+.|+|+||+.++.. ....++ ..++.+++++|........................+.|+++|+||+|+.+.
T Consensus 52 ~~~l~D~~G~~~~~~------~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 123 (167)
T 1kao_A 52 VLEILDTAGTEQFAS------MRDLYI--KNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESE 123 (167)
T ss_dssp EEEEEECCCTTCCHH------HHHHHH--HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGG
T ss_pred EEEEEECCCchhhHH------HHHHHh--ccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCccccc
Confidence 589999999876522 222222 236999999998642211111100000011112247899999999999765
Q ss_pred hh
Q 024413 247 EF 248 (268)
Q Consensus 247 ~~ 248 (268)
++
T Consensus 124 ~~ 125 (167)
T 1kao_A 124 RE 125 (167)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 85
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.48 E-value=7.8e-14 Score=122.80 Aligned_cols=120 Identities=24% Similarity=0.372 Sum_probs=74.5
Q ss_pred CeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccchhhh
Q 024413 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (268)
Q Consensus 69 g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l 148 (268)
...++|+|++|+|||||+|.|+|.... ..+.++.+ +.... ....
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~-------------v~~~pg~t-v~~~~-----------------~~~~----- 46 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQR-------------VGNWPGVT-VERKS-----------------GLVK----- 46 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCC-------------CCSSSCCC-CSCEE-----------------EECT-----
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCc-------------ccCCCCCc-EEEEE-----------------EEEe-----
Confidence 357899999999999999999986432 11112111 00000 0000
Q ss_pred cHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHH
Q 024413 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY 228 (268)
Q Consensus 149 S~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~ 228 (268)
. +.++.|+|+||+..+............++....+|++++|+|+... .. .......+.
T Consensus 47 --------------~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~---e~----~~~~~~~l~ 104 (272)
T 3b1v_A 47 --------------K-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNL---ER----NLYLTTQLI 104 (272)
T ss_dssp --------------T-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGH---HH----HHHHHHHHH
T ss_pred --------------c-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCch---Hh----HHHHHHHHH
Confidence 1 4479999999998764333222333344544568999999999642 11 112224445
Q ss_pred hhCCCceeeecCCCcCCh
Q 024413 229 KTRLPLVLAFNKTDVAQH 246 (268)
Q Consensus 229 ~~~~p~ilV~NK~Dl~~~ 246 (268)
..++|+++|+||+|+...
T Consensus 105 ~~~~p~ilv~NK~Dl~~~ 122 (272)
T 3b1v_A 105 ETGIPVTIALNMIDVLDG 122 (272)
T ss_dssp HTCSCEEEEEECHHHHHH
T ss_pred hcCCCEEEEEEChhhCCc
Confidence 578999999999998654
No 86
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.47 E-value=1e-13 Score=125.74 Aligned_cols=155 Identities=16% Similarity=0.114 Sum_probs=88.1
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccch
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 145 (268)
..++.+++|+|++|+|||||++.|++...+.++.+.+.+.++......... ..+.. -++.+...++...++.+
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~i---l~d~~----~~~~~~~~~~~~i~~~~ 125 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSI---LGDKT----RMNDLARAEAAFIRPVP 125 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC----------------------CTTTTCTTEEEEEEC
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcce---ecccc----hHHhhccCCCceeecCc
Confidence 567899999999999999999999999988888888887776432211110 01110 01222333333333222
Q ss_pred h-hhcHH-HHHHHHHHH-HHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHH
Q 024413 146 N-LFTTK-FDEVISLIE-RRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLY 222 (268)
Q Consensus 146 ~-~lS~G-~~qr~~ia~-al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~ 222 (268)
. .+.+| .+....... ....+.+++|+||||+.++.. .+ ...+|++++|+|+..........
T Consensus 126 ~~~~l~g~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~------~~-----~~~aD~vl~Vvd~~~~~~~~~l~----- 189 (341)
T 2p67_A 126 SSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQSET------EV-----ARMVDCFISLQIAGGGDDLQGIK----- 189 (341)
T ss_dssp C-----CHHHHHHHHHHHHHHTTCSEEEEEEECCTTHHH------HH-----HTTCSEEEEEECC------CCCC-----
T ss_pred cccccchhHHHHHHHHHHhhccCCCEEEEeCCCccchHH------HH-----HHhCCEEEEEEeCCccHHHHHHH-----
Confidence 1 12222 222222222 225688999999999876521 11 25689999999986442211110
Q ss_pred HHHHHHhhCCCceeeecCCCcCChh
Q 024413 223 ACSILYKTRLPLVLAFNKTDVAQHE 247 (268)
Q Consensus 223 ~~~~l~~~~~p~ilV~NK~Dl~~~~ 247 (268)
. ...++|.++|+||+|+.+..
T Consensus 190 --~--~~~~~p~ivv~NK~Dl~~~~ 210 (341)
T 2p67_A 190 --K--GLMEVADLIVINKDDGDNHT 210 (341)
T ss_dssp --H--HHHHHCSEEEECCCCTTCHH
T ss_pred --H--hhhcccCEEEEECCCCCChH
Confidence 0 11256899999999998753
No 87
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.47 E-value=4.5e-14 Score=123.28 Aligned_cols=76 Identities=20% Similarity=0.201 Sum_probs=50.4
Q ss_pred CCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeecCCCcC
Q 024413 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA 244 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK~Dl~ 244 (268)
+.++.|+|+||+..+............++....+|++++|+|+... ... ......+...++|+++|+||+|+.
T Consensus 51 ~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~---~~~----~~~~~~l~~~~~pvilv~NK~Dl~ 123 (258)
T 3a1s_A 51 GYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNP---EQS----LYLLLEILEMEKKVILAMTAIDEA 123 (258)
T ss_dssp TEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSC---HHH----HHHHHHHHTTTCCEEEEEECHHHH
T ss_pred CeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCch---hhH----HHHHHHHHhcCCCEEEEEECcCCC
Confidence 4478999999997764333222233334444678999999999652 111 112345556789999999999996
Q ss_pred Chh
Q 024413 245 QHE 247 (268)
Q Consensus 245 ~~~ 247 (268)
..+
T Consensus 124 ~~~ 126 (258)
T 3a1s_A 124 KKT 126 (258)
T ss_dssp HHT
T ss_pred Ccc
Confidence 543
No 88
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.47 E-value=2.2e-13 Score=111.50 Aligned_cols=75 Identities=27% Similarity=0.330 Sum_probs=47.0
Q ss_pred CCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeecCCCcC
Q 024413 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA 244 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK~Dl~ 244 (268)
+..+.|+|+||+.++............++....++++++++|.... .. .......+...+.|+++|+||+|+.
T Consensus 53 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~---~~----~~~~~~~~~~~~~piilv~nK~Dl~ 125 (188)
T 2wjg_A 53 GEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL---ER----NLYLTLQLMEMGANLLLALNKMDLA 125 (188)
T ss_dssp TEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGGH---HH----HHHHHHHHHTTTCCEEEEEECHHHH
T ss_pred CcEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchhH---HH----HHHHHHHHHhcCCCEEEEEEhhhcc
Confidence 3468999999998763222122222333443457999999998531 11 1111234445688999999999986
Q ss_pred Ch
Q 024413 245 QH 246 (268)
Q Consensus 245 ~~ 246 (268)
..
T Consensus 126 ~~ 127 (188)
T 2wjg_A 126 KS 127 (188)
T ss_dssp HH
T ss_pred cc
Confidence 54
No 89
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.47 E-value=1.5e-13 Score=122.73 Aligned_cols=156 Identities=13% Similarity=0.062 Sum_probs=94.5
Q ss_pred ccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC-------------Cccccc-ccc-hhhHHHHHH
Q 024413 64 NFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM-------------TLPFAA-NID-IRDTIRYKE 128 (268)
Q Consensus 64 ~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~-------------~~~~~~-~~~-~~~~~~~~~ 128 (268)
...++|++++|+||||||||||++.|+|++.+++|.+.+.+.+.... .+++.. ... ......+.+
T Consensus 95 ~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e 174 (302)
T 3b9q_A 95 LGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSK 174 (302)
T ss_dssp CCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHH
T ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHH
Confidence 34678999999999999999999999999999999999998875321 111111 000 000011111
Q ss_pred -------------HHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCC--EEEEeCCCCcchhhhhhHHHHHHHHH
Q 024413 129 -------------VMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLD--YVLVDTPGQIEIFTWSASGAIITEAF 193 (268)
Q Consensus 129 -------------~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~--illlDePG~~~~~~~~~~~~~i~~~~ 193 (268)
+++.+++..... ..+.+|| +||+++++++..+|+ ++++| |+...... .. .+.+
T Consensus 175 ~l~~~~~~~~d~~lldt~gl~~~~~--~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~-----~~-~~~~ 242 (302)
T 3b9q_A 175 AVKRGKEEGYDVVLCDTSGRLHTNY--SLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNML-----PQ-AREF 242 (302)
T ss_dssp HHHHHHHTTCSEEEECCCCCSSCCH--HHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGH-----HH-HHHH
T ss_pred HHHHHHHcCCcchHHhcCCCCcchh--HHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHH-----HH-HHHH
Confidence 122233332222 2378899 999999999999999 99999 97643211 11 2333
Q ss_pred hc-cCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeec
Q 024413 194 AS-TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFN 239 (268)
Q Consensus 194 ~~-~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~N 239 (268)
.. ....++++.+.. ........ .......+.|+..+.+
T Consensus 243 ~~~~g~t~iiiThlD-~~~~~g~~-------l~~~~~~~~pi~~i~~ 281 (302)
T 3b9q_A 243 NEVVGITGLILTKLD-GSARGGCV-------VSVVEELGIPVKFIGV 281 (302)
T ss_dssp HHHTCCCEEEEECCS-SCSCTHHH-------HHHHHHHCCCEEEEEC
T ss_pred HHhcCCCEEEEeCCC-CCCccChh-------eehHHHHCCCEEEEeC
Confidence 32 334566655522 11111111 2344466789888765
No 90
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.47 E-value=2.8e-15 Score=139.23 Aligned_cols=120 Identities=12% Similarity=0.090 Sum_probs=82.6
Q ss_pred CCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCC----------CCCcccccccch-hhHHHHHHHHHHcCCC
Q 024413 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA----------VMTLPFAANIDI-RDTIRYKEVMKQFNLG 136 (268)
Q Consensus 68 ~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~----------~~~~~~~~~~~~-~~~~~~~~~l~~~~l~ 136 (268)
.+.+++|+|+||||||||+|+|+|+..+++|.+.+.+.+.. ...+.+.++..+ .....+.++++.+++.
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~ 147 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFY 147 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence 44499999999999999999999999999998877665321 011111111111 1233577889999887
Q ss_pred CCCCcccchhhhcHH--HHHHHHHHHHHhc----------CCCEEEEeCCCCc-chhhhhhHHHHHHH
Q 024413 137 PNGGILTSLNLFTTK--FDEVISLIERRAD----------HLDYVLVDTPGQI-EIFTWSASGAIITE 191 (268)
Q Consensus 137 ~~~~~~~~~~~lS~G--~~qr~~ia~al~~----------~~~illlDePG~~-~~~~~~~~~~~i~~ 191 (268)
.... . +. ||+| |+||+.+|+++.. +|+++++|||+.. ++.........+.+
T Consensus 148 ~~~~-~--~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~ 211 (413)
T 1tq4_A 148 EYDF-F--II-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRL 211 (413)
T ss_dssp GCSE-E--EE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHH
T ss_pred ccCC-e--EE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHH
Confidence 5422 2 33 9999 9999999999999 9999999999764 44333333333333
No 91
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.46 E-value=9.1e-13 Score=107.96 Aligned_cols=125 Identities=17% Similarity=0.176 Sum_probs=74.9
Q ss_pred cCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccchh
Q 024413 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (268)
Q Consensus 67 ~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 146 (268)
.....++|+|++|+|||||++.|.+..... ....+... .... ..
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~------------~~~~~~~t-~~~~-------------------~~---- 64 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAF------------VSKTPGKT-RSIN-------------------FY---- 64 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSC------------CCSSCCCC-CCEE-------------------EE----
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCcccc------------ccCCCCCc-cCeE-------------------EE----
Confidence 344689999999999999999999865221 11111100 0000 00
Q ss_pred hhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhh----hhhHHHHHHHHHhc-cCCcEEEEEEcCCCcCCchhhHHHHH
Q 024413 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFT----WSASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNML 221 (268)
Q Consensus 147 ~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~----~~~~~~~i~~~~~~-~~~d~vv~vvD~~~~~~~~~~~~~~~ 221 (268)
..+.++.|+|+||+..... ..........+++. ..++++++|+|+..........
T Consensus 65 ----------------~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~---- 124 (195)
T 3pqc_A 65 ----------------LVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLM---- 124 (195)
T ss_dssp ----------------EETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH----
T ss_pred ----------------EECCcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHH----
Confidence 1144789999999644211 11122223333433 3459999999987654443321
Q ss_pred HHHHHHHhhCCCceeeecCCCcCChhh
Q 024413 222 YACSILYKTRLPLVLAFNKTDVAQHEF 248 (268)
Q Consensus 222 ~~~~~l~~~~~p~ilV~NK~Dl~~~~~ 248 (268)
...++...+.|+++|+||+|+.++++
T Consensus 125 -~~~~~~~~~~p~i~v~nK~Dl~~~~~ 150 (195)
T 3pqc_A 125 -MVEWMKSLNIPFTIVLTKMDKVKMSE 150 (195)
T ss_dssp -HHHHHHHTTCCEEEEEECGGGSCGGG
T ss_pred -HHHHHHHcCCCEEEEEEChhcCChHH
Confidence 13455566899999999999986543
No 92
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.46 E-value=5e-14 Score=112.57 Aligned_cols=73 Identities=12% Similarity=0.072 Sum_probs=41.8
Q ss_pred CEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeecCCCcCCh
Q 024413 167 DYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQH 246 (268)
Q Consensus 167 ~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK~Dl~~~ 246 (268)
.+.|+|+||+.++.. ....+++ .+|++++++|........................+.|+++|+||+|+.+.
T Consensus 52 ~~~l~D~~G~~~~~~------~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 123 (167)
T 1c1y_A 52 MLEILDTAGTEQFTA------MRDLYMK--NGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE 123 (167)
T ss_dssp EEEEEEECSSCSSTT------HHHHHHH--HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGG
T ss_pred EEEEEECCChHHHHH------HHHHHhc--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECcccccc
Confidence 589999999876532 2222232 26899999998543111110000000011111247899999999999764
Q ss_pred h
Q 024413 247 E 247 (268)
Q Consensus 247 ~ 247 (268)
+
T Consensus 124 ~ 124 (167)
T 1c1y_A 124 R 124 (167)
T ss_dssp C
T ss_pred c
Confidence 3
No 93
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.45 E-value=2.1e-13 Score=117.01 Aligned_cols=132 Identities=16% Similarity=0.152 Sum_probs=69.6
Q ss_pred CCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccchhh
Q 024413 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (268)
Q Consensus 68 ~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 147 (268)
....++|+|++|+|||||+|.|+|......+.... ..+..... ...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~--------~~t~~~~~---------------------~~~----- 73 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAK--------SITKKCEK---------------------RSS----- 73 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCCSCC---------------CCSCEE---------------------EEE-----
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCC--------ceeeeEEE---------------------EEE-----
Confidence 44678999999999999999999977654432110 00000000 000
Q ss_pred hcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhh-hHHHHHHHHHhc--cCCcEEEEEEcCCCcCCchhhHHHHHHHH
Q 024413 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWS-ASGAIITEAFAS--TFPTVVTYVVDTPRSANPMTFMSNMLYAC 224 (268)
Q Consensus 148 lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~-~~~~~i~~~~~~--~~~d~vv~vvD~~~~~~~~~~~~~~~~~~ 224 (268)
...+..+.|+||||+.+..... .....+.+.+.. ..++++++|+|+.. ++..+... +....
T Consensus 74 --------------~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~-~~~~~~~~-l~~~~ 137 (239)
T 3lxx_A 74 --------------SWKETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGR-YTEEEHKA-TEKIL 137 (239)
T ss_dssp --------------EETTEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTC-CSSHHHHH-HHHHH
T ss_pred --------------EeCCceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCC-CCHHHHHH-HHHHH
Confidence 0124478999999987653211 122233333322 35799999999864 33332110 11111
Q ss_pred HHH-HhhCCCceeeecCCCcCChhhh
Q 024413 225 SIL-YKTRLPLVLAFNKTDVAQHEFA 249 (268)
Q Consensus 225 ~~l-~~~~~p~ilV~NK~Dl~~~~~~ 249 (268)
... .....|+++|+||+|+...+.+
T Consensus 138 ~~~~~~~~~~~iiv~nK~D~~~~~~~ 163 (239)
T 3lxx_A 138 KMFGERARSFMILIFTRKDDLGDTNL 163 (239)
T ss_dssp HHHHHHHGGGEEEEEECGGGC-----
T ss_pred HHhhhhccceEEEEEeCCccCCcccH
Confidence 111 1245699999999999865443
No 94
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.45 E-value=3.5e-14 Score=113.24 Aligned_cols=72 Identities=17% Similarity=0.177 Sum_probs=39.5
Q ss_pred CEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHH-HHHHHHhhCCCceeeecCCCcCC
Q 024413 167 DYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLY-ACSILYKTRLPLVLAFNKTDVAQ 245 (268)
Q Consensus 167 ~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~-~~~~l~~~~~p~ilV~NK~Dl~~ 245 (268)
++.|+|+||+.++.. ....+++ .+|++++|+|......... ...... ........++|+++|+||+|+.+
T Consensus 53 ~~~l~D~~G~~~~~~------~~~~~~~--~~d~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 123 (168)
T 1u8z_A 53 QIDILDTAGQEDYAA------IRDNYFR--SGEGFLCVFSITEMESFAA-TADFREQILRVKEDENVPFLLVGNKSDLED 123 (168)
T ss_dssp EEEEEECCC---CHH------HHHHHHH--HCSEEEEEEETTCHHHHHH-HHHHHHHHHHHHCCTTSCEEEEEECGGGGG
T ss_pred EEEEEECCCcchhHH------HHHHHhh--cCCEEEEEEECCCHHHHHH-HHHHHHHHHHhcCCCCCcEEEEEECccccc
Confidence 689999999876522 2222232 3799999999864321111 110000 01111123789999999999976
Q ss_pred hh
Q 024413 246 HE 247 (268)
Q Consensus 246 ~~ 247 (268)
.+
T Consensus 124 ~~ 125 (168)
T 1u8z_A 124 KR 125 (168)
T ss_dssp GC
T ss_pred cC
Confidence 43
No 95
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.45 E-value=4.1e-14 Score=115.39 Aligned_cols=73 Identities=16% Similarity=0.110 Sum_probs=41.6
Q ss_pred CEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeecCCCcCCh
Q 024413 167 DYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQH 246 (268)
Q Consensus 167 ~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK~Dl~~~ 246 (268)
.+.|+|+||+.++.. ....+++ .+|++++|+|............-............+|+++|+||+|+.+.
T Consensus 67 ~l~i~Dt~G~~~~~~------~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 138 (183)
T 3kkq_A 67 ILDVLDTAGQEEFSA------MREQYMR--TGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHL 138 (183)
T ss_dssp EEEEEECCSCGGGCS------SHHHHHH--HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTT
T ss_pred EEEEEECCCchhhHH------HHHHHHh--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhc
Confidence 366799999876532 1122222 27999999999653211111000001012222357899999999999764
Q ss_pred h
Q 024413 247 E 247 (268)
Q Consensus 247 ~ 247 (268)
+
T Consensus 139 ~ 139 (183)
T 3kkq_A 139 R 139 (183)
T ss_dssp C
T ss_pred c
Confidence 3
No 96
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.44 E-value=7.6e-13 Score=118.37 Aligned_cols=154 Identities=16% Similarity=0.145 Sum_probs=99.8
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccch
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 145 (268)
..++.+++|+|+|||||||++..|++.+.+.++++.+.+.|.... ........+.+.+++.. +
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~----------~a~eqL~~~~~~~gl~~-------~ 163 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRA----------AAIEQLKIWGERVGATV-------I 163 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH----------HHHHHHHHHHHHHTCEE-------E
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccH----------HHHHHHHHHHHHcCCcE-------E
Confidence 467899999999999999999999999998888998887664211 11112334455555531 2
Q ss_pred hhhcHHHHHHH---HHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHH---Hh---ccCCcEEEEEEcCCCcCCchhh
Q 024413 146 NLFTTKFDEVI---SLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEA---FA---STFPTVVTYVVDTPRSANPMTF 216 (268)
Q Consensus 146 ~~lS~G~~qr~---~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~---~~---~~~~d~vv~vvD~~~~~~~~~~ 216 (268)
...|+|+.+++ ++++++..+++++|+||||.... .......+.+. +. ....+.+++|+|+..+ .+.
T Consensus 164 ~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~~~~--~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~---~~~ 238 (306)
T 1vma_A 164 SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGRLHT--KKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG---QNG 238 (306)
T ss_dssp CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCCCSC--HHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH---HHH
T ss_pred ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCchhh--HHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC---HHH
Confidence 34678888888 88889999999999999996332 22222222222 21 1236889999999522 221
Q ss_pred HHHHHHHHHHHHhhCCCceeeecCCCcCC
Q 024413 217 MSNMLYACSILYKTRLPLVLAFNKTDVAQ 245 (268)
Q Consensus 217 ~~~~~~~~~~l~~~~~p~ilV~NK~Dl~~ 245 (268)
... ...+...-...-+|+||.|-..
T Consensus 239 l~~----a~~~~~~~~i~gvVlTk~D~~~ 263 (306)
T 1vma_A 239 LVQ----AKIFKEAVNVTGIILTKLDGTA 263 (306)
T ss_dssp HHH----HHHHHHHSCCCEEEEECGGGCS
T ss_pred HHH----HHHHHhcCCCCEEEEeCCCCcc
Confidence 111 1222222233567889999753
No 97
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.44 E-value=8.3e-13 Score=108.62 Aligned_cols=81 Identities=17% Similarity=0.109 Sum_probs=50.9
Q ss_pred CCCEEEEeCCCCcchhhh----hhHHHHHHHHHhc-cCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeec
Q 024413 165 HLDYVLVDTPGQIEIFTW----SASGAIITEAFAS-TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFN 239 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~----~~~~~~i~~~~~~-~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~N 239 (268)
+.++.|+|+||+.+.... .........+++. ...|++++|+|+.......+.. ...++...+.|+++|+|
T Consensus 68 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-----~~~~~~~~~~p~i~v~n 142 (195)
T 1svi_A 68 NDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQ-----MYEFLKYYGIPVIVIAT 142 (195)
T ss_dssp TTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-----HHHHHHHTTCCEEEEEE
T ss_pred CCcEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHH-----HHHHHHHcCCCEEEEEE
Confidence 347999999997543211 1111223333333 2349999999997765544321 13445567899999999
Q ss_pred CCCcCChhhhh
Q 024413 240 KTDVAQHEFAL 250 (268)
Q Consensus 240 K~Dl~~~~~~~ 250 (268)
|+|+.++++..
T Consensus 143 K~Dl~~~~~~~ 153 (195)
T 1svi_A 143 KADKIPKGKWD 153 (195)
T ss_dssp CGGGSCGGGHH
T ss_pred CcccCChHHHH
Confidence 99998865443
No 98
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.44 E-value=6.5e-13 Score=120.85 Aligned_cols=154 Identities=15% Similarity=0.100 Sum_probs=80.1
Q ss_pred cCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccch-
Q 024413 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL- 145 (268)
Q Consensus 67 ~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~- 145 (268)
+.+.+++|+|+||||||||+|.|+|...++++.+.|.+.++........ -+.+. ..|+.++..+.......+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~---~l~d~----~rm~~~~~~~~~~v~~~~~ 144 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGS---LLGDK----TRMTELSRDMNAYIRPSPT 144 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-----------------------CCSTTCTTEEEECC--
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcc---hhchH----HHHHHhcCCCCEEEEecCC
Confidence 4578999999999999999999999999989999998877643221000 00010 011222211110000000
Q ss_pred hhhcHHHHHH-H-HHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHH
Q 024413 146 NLFTTKFDEV-I-SLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYA 223 (268)
Q Consensus 146 ~~lS~G~~qr-~-~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~ 223 (268)
...-||.-+. . .+...-..+.+++|+||||+..+. ..+ ...+|++++|+|+......... .
T Consensus 145 ~~~lgg~tr~~~~~~~~~~~~~~~~iliDT~Gi~~~~------~~l-----~~~~d~vl~V~d~~~~~~~~~i----~-- 207 (349)
T 2www_A 145 RGTLGGVTRTTNEAILLCEGAGYDIILIETVGVGQSE------FAV-----ADMVDMFVLLLPPAGGDELQGI----K-- 207 (349)
T ss_dssp -------CTTHHHHHHHHHHTTCSEEEEECCCC--CH------HHH-----HTTCSEEEEEECCC---------------
T ss_pred ccccccchHHHHHHHHhhccCCCCEEEEECCCcchhh------hhH-----HhhCCEEEEEEcCCcchhHHHh----H--
Confidence 0000111111 1 111111357899999999986431 111 2458999999999654221110 0
Q ss_pred HHHHHhhCCCceeeecCCCcCChh
Q 024413 224 CSILYKTRLPLVLAFNKTDVAQHE 247 (268)
Q Consensus 224 ~~~l~~~~~p~ilV~NK~Dl~~~~ 247 (268)
. ...+.|.++|+||+|+.+..
T Consensus 208 -~--~il~~~~ivVlNK~Dl~~~~ 228 (349)
T 2www_A 208 -R--GIIEMADLVAVTKSDGDLIV 228 (349)
T ss_dssp ------CCSCSEEEECCCSGGGHH
T ss_pred -H--HHHhcCCEEEEeeecCCCch
Confidence 1 12367999999999998643
No 99
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.44 E-value=5.9e-13 Score=106.22 Aligned_cols=71 Identities=18% Similarity=0.192 Sum_probs=43.3
Q ss_pred CCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHH---hhCCCceeeecCC
Q 024413 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY---KTRLPLVLAFNKT 241 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~---~~~~p~ilV~NK~ 241 (268)
+..+.|+|+||+.++.. ....++ ..+|++++|+|+.... .+..........+. ..+.|+++|+||+
T Consensus 43 ~~~~~i~Dt~G~~~~~~------~~~~~~--~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~piilv~nK~ 111 (164)
T 1r8s_A 43 NISFTVWDVGGQDKIRP------LWRHYF--QNTQGLIFVVDSNDRE---RVNEAREELMRMLAEDELRDAVLLVFANKQ 111 (164)
T ss_dssp SCEEEEEECCCCGGGHH------HHHHHT--TTCSEEEEEEETTCGG---GHHHHHHHHHHHHTCGGGTTCEEEEEEECT
T ss_pred CEEEEEEEcCCChhhHH------HHHHHh--ccCCEEEEEEECCCHH---HHHHHHHHHHHHHhchhhcCCeEEEEEECc
Confidence 45799999999966421 222222 4579999999996432 21111111112222 2378999999999
Q ss_pred CcCCh
Q 024413 242 DVAQH 246 (268)
Q Consensus 242 Dl~~~ 246 (268)
|+.+.
T Consensus 112 Dl~~~ 116 (164)
T 1r8s_A 112 DLPNA 116 (164)
T ss_dssp TSTTC
T ss_pred CCcCC
Confidence 99764
No 100
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.44 E-value=4e-14 Score=117.80 Aligned_cols=124 Identities=23% Similarity=0.197 Sum_probs=68.8
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccch
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 145 (268)
..+...++|+|++|+|||||++.|.+........ .+........ +.+.
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~------------~t~~~~~~~~-----------~~~~--------- 68 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYD------------PTVENTYSKI-----------VTLG--------- 68 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCC------------CCSEEEEEEE-----------EC-----------
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCC------------CccceEEEEE-----------EEEC---------
Confidence 3456789999999999999999999865432110 0000000000 0000
Q ss_pred hhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHH
Q 024413 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (268)
Q Consensus 146 ~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~ 225 (268)
.....+.|+|+||+.++... ...+ ...+|++++|+|.... ..+.. ......
T Consensus 69 -----------------~~~~~~~l~Dt~G~~~~~~~------~~~~--~~~~d~~i~v~d~~~~---~s~~~-~~~~~~ 119 (201)
T 3oes_A 69 -----------------KDEFHLHLVDTAGQDEYSIL------PYSF--IIGVHGYVLVYSVTSL---HSFQV-IESLYQ 119 (201)
T ss_dssp -------------------CEEEEEEEECCCCTTCCC------CGGG--TTTCCEEEEEEETTCH---HHHHH-HHHHHH
T ss_pred -----------------CEEEEEEEEECCCccchHHH------HHHH--HhcCCEEEEEEeCCCH---HHHHH-HHHHHH
Confidence 01346799999998765321 1011 1347999999999642 22111 111112
Q ss_pred HHH----hhCCCceeeecCCCcCChhhhh
Q 024413 226 ILY----KTRLPLVLAFNKTDVAQHEFAL 250 (268)
Q Consensus 226 ~l~----~~~~p~ilV~NK~Dl~~~~~~~ 250 (268)
.+. ..++|+++|+||+|+...++..
T Consensus 120 ~i~~~~~~~~~piilv~nK~Dl~~~~~v~ 148 (201)
T 3oes_A 120 KLHEGHGKTRVPVVLVGNKADLSPEREVQ 148 (201)
T ss_dssp HHHC-----CCCEEEEEECTTCGGGCCSC
T ss_pred HHHHhcCCCCCCEEEEEECccCccccccC
Confidence 222 2368999999999997654333
No 101
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.44 E-value=7.4e-14 Score=118.84 Aligned_cols=77 Identities=19% Similarity=0.076 Sum_probs=44.7
Q ss_pred CEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCC--cCCchhhHHHHHHHHHHHHhhCCCceeeecCCCcC
Q 024413 167 DYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPR--SANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA 244 (268)
Q Consensus 167 ~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~--~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK~Dl~ 244 (268)
.+.||||+|+.++.. ....+++ .++++++++|... +++....+... .......+.|+++|+||+|+.
T Consensus 63 ~l~iwDtaGqe~~~~------l~~~~~~--~a~~~ilv~di~~~~Sf~~i~~~~~~---i~~~~~~~~piilVgNK~Dl~ 131 (216)
T 4dkx_A 63 RLQLWDTAGLERFRS------LIPSYIR--DSAAAVVVYDITNVNSFQQTTKWIDD---VRTERGSDVIIMLVGNKTDLA 131 (216)
T ss_dssp EEEEECCSCTTTCGG------GHHHHHT--TCSEEEEEEETTCHHHHHTHHHHHHH---HHHHHTTSSEEEEEEECTTCG
T ss_pred EEEEEECCCchhhhh------HHHHHhc--cccEEEEEeecchhHHHHHHHHHHHH---HHHhcCCCCeEEEEeeccchH
Confidence 578999999987643 3333443 3577777777643 22222211111 112224578999999999997
Q ss_pred Chhhhhhhhh
Q 024413 245 QHEFALEVQF 254 (268)
Q Consensus 245 ~~~~~~~~~~ 254 (268)
+.+++...+.
T Consensus 132 ~~r~V~~~e~ 141 (216)
T 4dkx_A 132 DKRQVSIEEG 141 (216)
T ss_dssp GGCCSCHHHH
T ss_pred hcCcccHHHH
Confidence 6544433333
No 102
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.43 E-value=4.7e-14 Score=114.20 Aligned_cols=74 Identities=16% Similarity=0.101 Sum_probs=42.5
Q ss_pred CCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeecCCCcCC
Q 024413 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQ 245 (268)
Q Consensus 166 ~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK~Dl~~ 245 (268)
..+.|+|+||+.++.. ....+++ .+|++++|+|........................+.|+++|+||+|+.+
T Consensus 57 ~~~~~~Dt~G~~~~~~------~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 128 (181)
T 2fn4_A 57 ARLDILDTAGQEEFGA------MREQYMR--AGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLES 128 (181)
T ss_dssp EEEEEEECCCTTTTSC------CHHHHHH--HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGG
T ss_pred EEEEEEECCCchhhHH------HHHHHHh--hCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 3688999999876522 1112222 2699999999864221111100000101222234789999999999976
Q ss_pred hh
Q 024413 246 HE 247 (268)
Q Consensus 246 ~~ 247 (268)
.+
T Consensus 129 ~~ 130 (181)
T 2fn4_A 129 QR 130 (181)
T ss_dssp GC
T ss_pred cc
Confidence 43
No 103
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.43 E-value=4.8e-13 Score=125.18 Aligned_cols=75 Identities=20% Similarity=0.159 Sum_probs=49.2
Q ss_pred CCCEEEEeCCCCcchhhhh---hHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeecCC
Q 024413 165 HLDYVLVDTPGQIEIFTWS---ASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKT 241 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~---~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK~ 241 (268)
+.++.|+||||+....... ........+ ...+|++++|+|+..+.+..+... ..++...++|+++|+||+
T Consensus 48 ~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~--~~~ad~il~V~D~~~~~~~~d~~i-----~~~l~~~~~p~ilv~NK~ 120 (439)
T 1mky_A 48 GKTFKLVDTCGVFDNPQDIISQKMKEVTLNM--IREADLVLFVVDGKRGITKEDESL-----ADFLRKSTVDTILVANKA 120 (439)
T ss_dssp TEEEEEEECTTTTSSGGGCCCHHHHHHHHHH--HTTCSEEEEEEETTTCCCHHHHHH-----HHHHHHHTCCEEEEEESC
T ss_pred CeEEEEEECCCccccccchHHHHHHHHHHHH--HHhCCEEEEEEECCCCCCHHHHHH-----HHHHHHcCCCEEEEEeCC
Confidence 4468999999997532111 111122222 256899999999987766554221 244556689999999999
Q ss_pred CcCCh
Q 024413 242 DVAQH 246 (268)
Q Consensus 242 Dl~~~ 246 (268)
|+.+.
T Consensus 121 D~~~~ 125 (439)
T 1mky_A 121 ENLRE 125 (439)
T ss_dssp CSHHH
T ss_pred CCccc
Confidence 98643
No 104
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.43 E-value=4e-13 Score=109.83 Aligned_cols=69 Identities=19% Similarity=0.106 Sum_probs=42.7
Q ss_pred CCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHh----hCCCceeeecCC
Q 024413 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK----TRLPLVLAFNKT 241 (268)
Q Consensus 166 ~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~----~~~p~ilV~NK~ 241 (268)
..+.|+|+||+..+.. ....+ ...+|++++|+|+......... ......+.. ..+|+++|+||+
T Consensus 70 ~~~~l~Dt~G~~~~~~------~~~~~--~~~~d~~i~v~d~~~~~s~~~~----~~~~~~i~~~~~~~~~piilv~nK~ 137 (195)
T 3bc1_A 70 IHLQLWDTAGLERFRS------LTTAF--FRDAMGFLLLFDLTNEQSFLNV----RNWISQLQMHAYSENPDIVLCGNKS 137 (195)
T ss_dssp EEEEEEEECCSGGGHH------HHHHT--TTTCSEEEEEEETTCHHHHHTH----HHHHHHHHHHSSSSSCCEEEEEECT
T ss_pred EEEEEEeCCCcHHHHH------HHHHH--HcCCCEEEEEEECCCHHHHHHH----HHHHHHHHHhcCCCCCCEEEEEECc
Confidence 3689999999965421 22222 2457999999999653222111 111122222 478999999999
Q ss_pred CcCCh
Q 024413 242 DVAQH 246 (268)
Q Consensus 242 Dl~~~ 246 (268)
|+...
T Consensus 138 Dl~~~ 142 (195)
T 3bc1_A 138 DLEDQ 142 (195)
T ss_dssp TCGGG
T ss_pred ccccc
Confidence 99764
No 105
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.43 E-value=9.5e-13 Score=107.94 Aligned_cols=116 Identities=20% Similarity=0.250 Sum_probs=66.6
Q ss_pred cCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccchh
Q 024413 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (268)
Q Consensus 67 ~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 146 (268)
++...++|+|++|+|||||++.+.+.... . +. +... .... .+ .
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~---~~----~t~~-~~~~-~~-----------------------~---- 56 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-H---TS----PTIG-SNVE-EI-----------------------V---- 56 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-E---EE----CCSC-SSCE-EE-----------------------E----
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-c---Cc----CCCc-cceE-EE-----------------------E----
Confidence 45678999999999999999999964432 0 10 0000 0000 00 0
Q ss_pred hhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHH
Q 024413 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (268)
Q Consensus 147 ~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~ 226 (268)
..+..+.|+|+||+.++.. ....++ ..+|++++|+|+.......... ......
T Consensus 57 ----------------~~~~~~~i~Dt~G~~~~~~------~~~~~~--~~~d~ii~v~d~~~~~s~~~~~---~~~~~~ 109 (187)
T 1zj6_A 57 ----------------INNTRFLMWDIGGQESLRS------SWNTYY--TNTEFVIVVVDSTDRERISVTR---EELYKM 109 (187)
T ss_dssp ----------------ETTEEEEEEECCC----CG------GGHHHH--TTCCEEEEEEETTCTTTHHHHH---HHHHHH
T ss_pred ----------------ECCEEEEEEECCCCHhHHH------HHHHHh--cCCCEEEEEEeCCCHHHHHHHH---HHHHHH
Confidence 1134789999999976522 112222 4579999999996542222111 111122
Q ss_pred HH---hhCCCceeeecCCCcCCh
Q 024413 227 LY---KTRLPLVLAFNKTDVAQH 246 (268)
Q Consensus 227 l~---~~~~p~ilV~NK~Dl~~~ 246 (268)
+. ..+.|+++|+||+|+.+.
T Consensus 110 ~~~~~~~~~piilv~NK~Dl~~~ 132 (187)
T 1zj6_A 110 LAHEDLRKAGLLIFANKQDVKEC 132 (187)
T ss_dssp HTSGGGTTCEEEEEEECTTSTTC
T ss_pred HhchhhCCCeEEEEEECCCCcCC
Confidence 22 247899999999999763
No 106
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.43 E-value=4.4e-13 Score=107.58 Aligned_cols=116 Identities=23% Similarity=0.275 Sum_probs=69.0
Q ss_pred cCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccchh
Q 024413 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (268)
Q Consensus 67 ~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 146 (268)
++...++|+|++|+|||||++.+.+...... .+. .... .. ...
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~--------~~t---~~~~----~~------------------~~~---- 47 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVTT--------IPT---IGFN----VE------------------TVT---- 47 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCCC--------CCC---SSEE----EE------------------EEE----
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCc--------CCc---Cccc----eE------------------EEE----
Confidence 4557899999999999999999987543210 000 0000 00 000
Q ss_pred hhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHH
Q 024413 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (268)
Q Consensus 147 ~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~ 226 (268)
..+..+.|+|+||+..+.. . ...+ ...+|++++|+|+.......... ......
T Consensus 48 ----------------~~~~~~~~~Dt~G~~~~~~--~----~~~~--~~~~d~ii~v~d~~~~~s~~~~~---~~~~~~ 100 (171)
T 1upt_A 48 ----------------YKNLKFQVWDLGGLTSIRP--Y----WRCY--YSNTDAVIYVVDSCDRDRIGISK---SELVAM 100 (171)
T ss_dssp ----------------ETTEEEEEEEECCCGGGGG--G----GGGG--CTTCSEEEEEEETTCCTTHHHHH---HHHHHH
T ss_pred ----------------ECCEEEEEEECCCChhhhH--H----HHHH--hccCCEEEEEEECCCHHHHHHHH---HHHHHH
Confidence 1134689999999976422 1 1111 13579999999996543222111 111122
Q ss_pred HHh---hCCCceeeecCCCcCCh
Q 024413 227 LYK---TRLPLVLAFNKTDVAQH 246 (268)
Q Consensus 227 l~~---~~~p~ilV~NK~Dl~~~ 246 (268)
+.. .+.|+++|+||+|+.+.
T Consensus 101 ~~~~~~~~~piilv~nK~Dl~~~ 123 (171)
T 1upt_A 101 LEEEELRKAILVVFANKQDMEQA 123 (171)
T ss_dssp HTCGGGTTCEEEEEEECTTSTTC
T ss_pred HhchhhCCCEEEEEEECCCCcCC
Confidence 222 47899999999999865
No 107
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.43 E-value=4.8e-13 Score=109.30 Aligned_cols=117 Identities=20% Similarity=0.215 Sum_probs=68.6
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccch
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 145 (268)
..+...++|+|++|+|||||++.|.+.... .+. +... .... .+ .
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~----~~~----~t~~-~~~~-~~-----------------------~--- 61 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEVV----HTS----PTIG-SNVE-EI-----------------------V--- 61 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSCE----EEE----CCSS-SSCE-EE-----------------------E---
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCC----ccC----CcCc-eeeE-EE-----------------------E---
Confidence 445678999999999999999999986431 000 0000 0000 00 0
Q ss_pred hhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHH
Q 024413 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (268)
Q Consensus 146 ~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~ 225 (268)
..+..+.|+|+||+.++.. ....+ ...+|++++|+|+.......... .....
T Consensus 62 -----------------~~~~~~~i~Dt~G~~~~~~------~~~~~--~~~~d~ii~v~D~~~~~s~~~~~---~~~~~ 113 (181)
T 2h17_A 62 -----------------INNTRFLMWDIGGQESLRS------SWNTY--YTNTEFVIVVVDSTDRERISVTR---EELYK 113 (181)
T ss_dssp -----------------ETTEEEEEEEESSSGGGTC------GGGGG--GTTCCEEEEEEETTCTTTHHHHH---HHHHH
T ss_pred -----------------ECCEEEEEEECCCCHhHHH------HHHHH--hccCCEEEEEEECCCHHHHHHHH---HHHHH
Confidence 1245789999999976522 11111 14579999999997542222111 11112
Q ss_pred HHH---hhCCCceeeecCCCcCCh
Q 024413 226 ILY---KTRLPLVLAFNKTDVAQH 246 (268)
Q Consensus 226 ~l~---~~~~p~ilV~NK~Dl~~~ 246 (268)
.+. ..++|+++|+||+|+.+.
T Consensus 114 ~~~~~~~~~~piilv~NK~Dl~~~ 137 (181)
T 2h17_A 114 MLAHEDLRKAGLLIFANKQDVKEC 137 (181)
T ss_dssp HHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHhChhhCCCeEEEEEECCCcccC
Confidence 222 257899999999999763
No 108
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.42 E-value=7.6e-14 Score=111.69 Aligned_cols=71 Identities=14% Similarity=0.051 Sum_probs=35.5
Q ss_pred CCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHH----hhCCCceeeecCC
Q 024413 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY----KTRLPLVLAFNKT 241 (268)
Q Consensus 166 ~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~----~~~~p~ilV~NK~ 241 (268)
..+.++|+||+..+.. ....++ ..++++++++|.... ..+.. ....+..+. ..++|+++|+||+
T Consensus 49 ~~~~i~D~~g~~~~~~------~~~~~~--~~~~~~i~v~d~~~~---~s~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~ 116 (166)
T 3q72_A 49 ASLMVYDIWEQDGGRW------LPGHCM--AMGDAYVIVYSVTDK---GSFEK-ASELRVQLRRARQTDDVPIILVGNKS 116 (166)
T ss_dssp EEEEEEECC-----------------------CCEEEEEEETTCH---HHHHH-HHHHHHHHHHCC---CCCEEEEEECT
T ss_pred EEEEEEECCCCccchh------hhhhhh--hhCCEEEEEEECCCH---HHHHH-HHHHHHHHHHhcCCCCCCEEEEEecc
Confidence 3689999999876421 111122 346899999998543 22111 111112222 2468999999999
Q ss_pred CcCChhh
Q 024413 242 DVAQHEF 248 (268)
Q Consensus 242 Dl~~~~~ 248 (268)
|+.+.++
T Consensus 117 Dl~~~~~ 123 (166)
T 3q72_A 117 DLVRSRE 123 (166)
T ss_dssp TCCSSCC
T ss_pred ccccccc
Confidence 9976543
No 109
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.42 E-value=1.1e-13 Score=110.85 Aligned_cols=71 Identities=13% Similarity=0.108 Sum_probs=42.3
Q ss_pred CCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHh-----hCCCceeeecC
Q 024413 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK-----TRLPLVLAFNK 240 (268)
Q Consensus 166 ~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~-----~~~p~ilV~NK 240 (268)
..+.|+|+||+.++.. ....+++ .+|++++++|......... . ...+..+.. .+.|+++|+||
T Consensus 51 ~~~~~~Dt~G~~~~~~------~~~~~~~--~~~~~i~v~d~~~~~~~~~-~---~~~~~~i~~~~~~~~~~pii~v~nK 118 (172)
T 2erx_A 51 CTLQITDTTGSHQFPA------MQRLSIS--KGHAFILVYSITSRQSLEE-L---KPIYEQICEIKGDVESIPIMLVGNK 118 (172)
T ss_dssp EEEEEEECCSCSSCHH------HHHHHHH--HCSEEEEEEETTCHHHHHT-T---HHHHHHHHHHHC---CCCEEEEEEC
T ss_pred EEEEEEECCCchhhHH------HHHHhcc--cCCEEEEEEECcCHHHHHH-H---HHHHHHHHHHhCCCCCCCEEEEEEc
Confidence 3689999999876522 2222232 2699999999864321111 0 111122221 36899999999
Q ss_pred CCcCChhh
Q 024413 241 TDVAQHEF 248 (268)
Q Consensus 241 ~Dl~~~~~ 248 (268)
+|+.+.++
T Consensus 119 ~Dl~~~~~ 126 (172)
T 2erx_A 119 CDESPSRE 126 (172)
T ss_dssp GGGGGGCC
T ss_pred cccccccc
Confidence 99976543
No 110
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.42 E-value=6.1e-14 Score=112.60 Aligned_cols=72 Identities=17% Similarity=0.084 Sum_probs=38.5
Q ss_pred CCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHh----hCCCceeeecCC
Q 024413 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK----TRLPLVLAFNKT 241 (268)
Q Consensus 166 ~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~----~~~p~ilV~NK~ 241 (268)
..+.++|+||+.++.. .+...+ ...+|++++|+|.... ..+.....+ ...+.. .++|+++|+||+
T Consensus 51 ~~~~i~D~~g~~~~~~------~~~~~~-~~~~d~~i~v~d~~~~---~s~~~~~~~-~~~~~~~~~~~~~p~ilv~nK~ 119 (169)
T 3q85_A 51 VTLIVYDIWEQGDAGG------WLQDHC-LQTGDAFLIVFSVTDR---RSFSKVPET-LLRLRAGRPHHDLPVILVGNKS 119 (169)
T ss_dssp EEEEEECCCCC--------------CHH-HHHCSEEEEEEETTCH---HHHHTHHHH-HHHHHHHSTTSCCCEEEEEECT
T ss_pred EEEEEEECCCccccch------hhhhhh-hccCCEEEEEEECCCh---HHHHHHHHH-HHHHHhcccCCCCCEEEEeeCc
Confidence 3678999999976522 111111 1126999999998542 111110011 122221 278999999999
Q ss_pred CcCChhh
Q 024413 242 DVAQHEF 248 (268)
Q Consensus 242 Dl~~~~~ 248 (268)
|+.+.++
T Consensus 120 Dl~~~~~ 126 (169)
T 3q85_A 120 DLARSRE 126 (169)
T ss_dssp TCGGGCC
T ss_pred chhhccc
Confidence 9975443
No 111
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.42 E-value=7.1e-14 Score=113.73 Aligned_cols=72 Identities=17% Similarity=0.182 Sum_probs=41.9
Q ss_pred CEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHH-HHHHHHHhhCCCceeeecCCCcCC
Q 024413 167 DYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNML-YACSILYKTRLPLVLAFNKTDVAQ 245 (268)
Q Consensus 167 ~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~-~~~~~l~~~~~p~ilV~NK~Dl~~ 245 (268)
.+.|+|+||+.++.. ....+++ .+|++++|+|......... ..... .........++|+++|+||+|+.+
T Consensus 67 ~~~l~Dt~G~~~~~~------~~~~~~~--~~d~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 137 (187)
T 2a9k_A 67 QIDILDTAGQEDYAA------IRDNYFR--SGEGFLCVFSITEMESFAA-TADFREQILRVKEDENVPFLLVGNKSDLED 137 (187)
T ss_dssp EEEEEECCCTTCCHH------HHHHHHH--HCSEEEEEEETTCHHHHHH-HHHHHHHHHHHHCCTTCCEEEEEECGGGGG
T ss_pred EEEEEECCCCcccHH------HHHHHhc--cCCEEEEEEECcCHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 689999999876522 2222232 3799999999864321111 11000 001111123789999999999976
Q ss_pred hh
Q 024413 246 HE 247 (268)
Q Consensus 246 ~~ 247 (268)
.+
T Consensus 138 ~~ 139 (187)
T 2a9k_A 138 KR 139 (187)
T ss_dssp GC
T ss_pred cC
Confidence 43
No 112
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.42 E-value=6.9e-13 Score=121.06 Aligned_cols=156 Identities=13% Similarity=0.061 Sum_probs=94.8
Q ss_pred ccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCC-------------Cccccc-ccc-hhhHHHHHH
Q 024413 64 NFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVM-------------TLPFAA-NID-IRDTIRYKE 128 (268)
Q Consensus 64 ~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~-------------~~~~~~-~~~-~~~~~~~~~ 128 (268)
...++|++++|+||||||||||++.|+|++.+++|.+.+.+.|.... .+++.. ... ......+.+
T Consensus 152 l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e 231 (359)
T 2og2_A 152 LGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSK 231 (359)
T ss_dssp CCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHH
T ss_pred eecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHH
Confidence 34678999999999999999999999999999999999998875321 111111 000 000011111
Q ss_pred -------------HHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCC--EEEEeCCCCcchhhhhhHHHHHHHHH
Q 024413 129 -------------VMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLD--YVLVDTPGQIEIFTWSASGAIITEAF 193 (268)
Q Consensus 129 -------------~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~--illlDePG~~~~~~~~~~~~~i~~~~ 193 (268)
+++.+++..... ..+.+|| +||+.|++++..+|+ ++++| |+...... .. .+.+
T Consensus 232 ~l~~~~~~~~d~~lldt~Gl~~~~~--~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~-----~~-~~~~ 299 (359)
T 2og2_A 232 AVKRGKEEGYDVVLCDTSGRLHTNY--SLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNML-----PQ-AREF 299 (359)
T ss_dssp HHHHHHHTTCSEEEEECCCCSSCCH--HHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGH-----HH-HHHH
T ss_pred HHHHHHhCCCHHHHHHhcCCChhhh--hHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHH-----HH-HHHH
Confidence 112233332222 2378899 999999999999999 99999 97643211 11 2233
Q ss_pred hc-cCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeec
Q 024413 194 AS-TFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFN 239 (268)
Q Consensus 194 ~~-~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~N 239 (268)
.. ....+|++.+... ....... +......+.|+..+.+
T Consensus 300 ~~~~g~t~iiiThlD~-~~~gG~~-------lsi~~~~~~pI~~ig~ 338 (359)
T 2og2_A 300 NEVVGITGLILTKLDG-SARGGCV-------VSVVEELGIPVKFIGV 338 (359)
T ss_dssp HHHTCCCEEEEESCTT-CSCTHHH-------HHHHHHHCCCEEEEEC
T ss_pred HHhcCCeEEEEecCcc-cccccHH-------HHHHHHhCCCEEEEeC
Confidence 32 3346666655221 1111111 2344466889888765
No 113
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.42 E-value=2.7e-13 Score=111.41 Aligned_cols=75 Identities=21% Similarity=0.212 Sum_probs=42.7
Q ss_pred CCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeecCCCcCC
Q 024413 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQ 245 (268)
Q Consensus 166 ~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK~Dl~~ 245 (268)
..+.|+|+||+.++.. . ....++ ..+|++++|+|+...........-...........+.|+++|+||+|+.+
T Consensus 69 ~~~~l~Dt~G~~~~~~-~----~~~~~~--~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 141 (189)
T 1z06_A 69 IKIQLWDTAGQERFRK-S----MVQHYY--RNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRS 141 (189)
T ss_dssp EEEEEEECCCSHHHHT-T----THHHHH--TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGG
T ss_pred EEEEEEECCCchhhhh-h----hhHHHh--cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 3689999999865420 1 122222 35799999999964321111110000001111134789999999999976
Q ss_pred hh
Q 024413 246 HE 247 (268)
Q Consensus 246 ~~ 247 (268)
.+
T Consensus 142 ~~ 143 (189)
T 1z06_A 142 AI 143 (189)
T ss_dssp GC
T ss_pred cc
Confidence 43
No 114
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.42 E-value=5.5e-14 Score=114.40 Aligned_cols=75 Identities=20% Similarity=0.105 Sum_probs=40.5
Q ss_pred CCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeecCCCcCC
Q 024413 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQ 245 (268)
Q Consensus 166 ~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK~Dl~~ 245 (268)
..+.|+|+||+.++..... .+ ...+|++++++|........................++|+++|+||+|+..
T Consensus 54 ~~~~l~Dt~G~~~~~~~~~------~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 125 (181)
T 3t5g_A 54 YHLQLVDTAGQDEYSIFPQ------TY--SIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 125 (181)
T ss_dssp EEEEEEECCCCCTTCCCCG------GG--TTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTT
T ss_pred EEEEEEeCCCchhhhHHHH------HH--HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchh
Confidence 3578999999877522110 11 134799999999964211111100000001111234789999999999965
Q ss_pred hhh
Q 024413 246 HEF 248 (268)
Q Consensus 246 ~~~ 248 (268)
.+.
T Consensus 126 ~~~ 128 (181)
T 3t5g_A 126 ERV 128 (181)
T ss_dssp TCC
T ss_pred cce
Confidence 443
No 115
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.42 E-value=2.6e-13 Score=108.67 Aligned_cols=71 Identities=15% Similarity=0.120 Sum_probs=42.8
Q ss_pred CCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHH---hhCCCceeeecCCC
Q 024413 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY---KTRLPLVLAFNKTD 242 (268)
Q Consensus 166 ~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~---~~~~p~ilV~NK~D 242 (268)
..+.|+|+||+.++.. ....++ ..+|++++|+|+........ .......+. ....|+++|+||+|
T Consensus 55 ~~~~~~Dt~G~~~~~~------~~~~~~--~~~~~~i~v~d~~~~~s~~~----~~~~~~~l~~~~~~~~~iilv~nK~D 122 (170)
T 1z0j_A 55 HKFLIWDTAGLERFRA------LAPMYY--RGSAAAIIVYDITKEETFST----LKNWVRELRQHGPPSIVVAIAGNKCD 122 (170)
T ss_dssp EEEEEEEECCSGGGGG------GTHHHH--TTCSEEEEEEETTCHHHHHH----HHHHHHHHHHHSCTTSEEEEEEECTT
T ss_pred EEEEEEcCCCchhhhc------ccHhhC--cCCCEEEEEEECcCHHHHHH----HHHHHHHHHHhCCCCCcEEEEEECCc
Confidence 4689999999866422 111222 34799999999864321111 111112222 34678999999999
Q ss_pred cCChhh
Q 024413 243 VAQHEF 248 (268)
Q Consensus 243 l~~~~~ 248 (268)
+.+.++
T Consensus 123 l~~~~~ 128 (170)
T 1z0j_A 123 LTDVRE 128 (170)
T ss_dssp CGGGCC
T ss_pred cccccc
Confidence 976543
No 116
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.41 E-value=5e-13 Score=109.91 Aligned_cols=74 Identities=18% Similarity=0.154 Sum_probs=43.9
Q ss_pred CCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeecCCCcCC
Q 024413 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQ 245 (268)
Q Consensus 166 ~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK~Dl~~ 245 (268)
..+.|+|+||+.++.. ....++ ..+|++++|+|+........ ....+.........++|+++|+||+|+.+
T Consensus 65 ~~~~i~Dt~G~~~~~~------~~~~~~--~~~d~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~ 135 (196)
T 3tkl_A 65 IKLQIWDTAGQERFRT------ITSSYY--RGAHGIIVVYDVTDQESFNN-VKQWLQEIDRYASENVNKLLVGNKCDLTT 135 (196)
T ss_dssp EEEEEEEECCSGGGCT------THHHHH--TTCSEEEEEEETTCHHHHHT-HHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred EEEEEEECCCcHhhhh------hHHHHH--hhCCEEEEEEECcCHHHHHH-HHHHHHHHHHhcCCCCCEEEEEECccccc
Confidence 3689999999876532 222223 44799999999865321111 11111111111233789999999999976
Q ss_pred hhh
Q 024413 246 HEF 248 (268)
Q Consensus 246 ~~~ 248 (268)
.+.
T Consensus 136 ~~~ 138 (196)
T 3tkl_A 136 KKV 138 (196)
T ss_dssp TCC
T ss_pred ccc
Confidence 543
No 117
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.41 E-value=8.4e-13 Score=110.11 Aligned_cols=123 Identities=12% Similarity=0.075 Sum_probs=73.4
Q ss_pred ccccCCeEEEEEecCCCCHHHHHHHHHhcc-----cCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCC
Q 024413 64 NFKRKPVIIIVVGMAGSGKTTFMHRLVCHT-----QSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPN 138 (268)
Q Consensus 64 ~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~-----~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 138 (268)
....+|.+++|+|+||||||||+|+|+|.. .++.|...+.+ .
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~----------~----------------------- 67 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLIN----------L----------------------- 67 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEE----------E-----------------------
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeE----------E-----------------------
Confidence 347889999999999999999999999976 33322221100 0
Q ss_pred CCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhh----hhHHHHHHHHHhc-cCCcEEEEEEcCCCcCCc
Q 024413 139 GGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTW----SASGAIITEAFAS-TFPTVVTYVVDTPRSANP 213 (268)
Q Consensus 139 ~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~----~~~~~~i~~~~~~-~~~d~vv~vvD~~~~~~~ 213 (268)
. ..+..+.|+|+||+...... ......+..+++. ...+.+++++|.......
T Consensus 68 ---~--------------------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~ 124 (210)
T 1pui_A 68 ---F--------------------EVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKD 124 (210)
T ss_dssp ---E--------------------EEETTEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCH
T ss_pred ---E--------------------EecCCEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCch
Confidence 0 00126889999998642100 1112223333332 456899999999765443
Q ss_pred hhhHHHHHHHHHHHHhhCCCceeeecCCCcCChh
Q 024413 214 MTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHE 247 (268)
Q Consensus 214 ~~~~~~~~~~~~~l~~~~~p~ilV~NK~Dl~~~~ 247 (268)
.+. ....++...++|.++|.||+|+.+..
T Consensus 125 ~~~-----~~~~~~~~~~~~~~~v~nK~D~~s~~ 153 (210)
T 1pui_A 125 LDQ-----QMIEWAVDSNIAVLVLLTKADKLASG 153 (210)
T ss_dssp HHH-----HHHHHHHHTTCCEEEEEECGGGSCHH
T ss_pred hHH-----HHHHHHHHcCCCeEEEEecccCCCch
Confidence 221 11234456789999999999998764
No 118
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.41 E-value=4.1e-12 Score=104.14 Aligned_cols=72 Identities=18% Similarity=0.192 Sum_probs=43.4
Q ss_pred CCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHh-----hCCCceeeecC
Q 024413 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK-----TRLPLVLAFNK 240 (268)
Q Consensus 166 ~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~-----~~~p~ilV~NK 240 (268)
..+.|+|+||+.++.. ....++ ..+|++++|+|+.......+.. .......++.. .+.|+++|+||
T Consensus 74 ~~~~i~Dt~G~~~~~~------~~~~~~--~~~d~~i~v~D~~~~~~~~~~~-s~~~l~~~l~~~~~~~~~~piilv~NK 144 (198)
T 3t1o_A 74 TRFHLYTVPGQVFYNA------SRKLIL--RGVDGIVFVADSAPNRLRANAE-SMRNMRENLAEYGLTLDDVPIVIQVNK 144 (198)
T ss_dssp EEEEEEECCSCCSCSH------HHHHHT--TTCCEEEEEEECCGGGHHHHHH-HHHHHHHHHHHTTCCTTSSCEEEEEEC
T ss_pred eEEEEEeCCChHHHHH------HHHHHH--hcCCEEEEEEECCcchhhHhHH-HHHHHHHHHHhhccccCCCCEEEEEEc
Confidence 3689999999976532 122222 4579999999996322111110 01111123322 47899999999
Q ss_pred CCcCCh
Q 024413 241 TDVAQH 246 (268)
Q Consensus 241 ~Dl~~~ 246 (268)
+|+.+.
T Consensus 145 ~Dl~~~ 150 (198)
T 3t1o_A 145 RDLPDA 150 (198)
T ss_dssp TTSTTC
T ss_pred hhcccc
Confidence 999654
No 119
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.41 E-value=2.2e-13 Score=128.75 Aligned_cols=130 Identities=19% Similarity=0.207 Sum_probs=63.7
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccch
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 145 (268)
.+.+..++|+|++|+|||||+|.|++.... .....+.++ ++.. .....
T Consensus 230 ~r~~~kV~ivG~~nvGKSSLln~L~~~~~a------------~vs~~~gtT----~d~~-------------~~~i~--- 277 (476)
T 3gee_A 230 VSEGVSTVIAGKPNAGKSTLLNTLLGQERA------------IVSHMPGTT----RDYI-------------EECFI--- 277 (476)
T ss_dssp HHHCEEEEEECCTTSSHHHHHHHCC-----------------------------------------------CEEEE---
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHhCCCCc------------ccCCCCCce----EEEE-------------EEEEE---
Confidence 556788999999999999999999986422 111111110 0000 00000
Q ss_pred hhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHH-HHHHH-hccCCcEEEEEEcCCCcCCchhhHHHHHHH
Q 024413 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAI-ITEAF-ASTFPTVVTYVVDTPRSANPMTFMSNMLYA 223 (268)
Q Consensus 146 ~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~-i~~~~-~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~ 223 (268)
..+.++.|+||||+.++.. ..... +.... ....+|++++|+|+........ .......
T Consensus 278 -----------------~~g~~l~liDT~G~~~~~~--~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~-~~~~~~~ 337 (476)
T 3gee_A 278 -----------------HDKTMFRLTDTAGLREAGE--EIEHEGIRRSRMKMAEADLILYLLDLGTERLDDE-LTEIREL 337 (476)
T ss_dssp -----------------ETTEEEEEEC----------------------CCCSSCSEEEEEEETTTCSSGGG-HHHHHHH
T ss_pred -----------------ECCeEEEEEECCCCCcchh--HHHHHHHHHHHhhcccCCEEEEEEECCCCcchhh-hHHHHHH
Confidence 1244799999999977421 11111 11112 1245899999999987655432 1111111
Q ss_pred HHHHHhhCCCceeeecCCCcCChhhh
Q 024413 224 CSILYKTRLPLVLAFNKTDVAQHEFA 249 (268)
Q Consensus 224 ~~~l~~~~~p~ilV~NK~Dl~~~~~~ 249 (268)
...+ .++|+++|+||+|+.+....
T Consensus 338 l~~l--~~~piIvV~NK~Dl~~~~~~ 361 (476)
T 3gee_A 338 KAAH--PAAKFLTVANKLDRAANADA 361 (476)
T ss_dssp HHHC--TTSEEEEEEECTTSCTTTHH
T ss_pred HHhc--CCCCEEEEEECcCCCCccch
Confidence 1222 27899999999999876544
No 120
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.41 E-value=7.9e-13 Score=108.71 Aligned_cols=124 Identities=21% Similarity=0.328 Sum_probs=70.7
Q ss_pred cCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccchh
Q 024413 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (268)
Q Consensus 67 ~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 146 (268)
.+...++|+|++|||||||++.|.+...... +. ...+.. . .+
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~----~~------~~~~~~---~-~~------------------------ 87 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT----VV------SQEPLS---A-AD------------------------ 87 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC--------------------------C------------------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcc----cc------cCCCce---e-ee------------------------
Confidence 4556899999999999999999998654310 00 000000 0 00
Q ss_pred hhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHH
Q 024413 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (268)
Q Consensus 147 ~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~ 226 (268)
.....+.|+|+||+..+.. .....+...+ ..+|++++|+|+.. ....+..........
T Consensus 88 ----------------~~~~~~~l~Dt~G~~~~~~--~~~~~~~~~~--~~~~~~i~v~d~~~--~~~~~~~~~~~~~~~ 145 (193)
T 2ged_A 88 ----------------YDGSGVTLVDFPGHVKLRY--KLSDYLKTRA--KFVKGLIFMVDSTV--DPKKLTTTAEFLVDI 145 (193)
T ss_dssp ----------------CCCTTCSEEEETTCCBSSC--CHHHHHHHHG--GGEEEEEEEEETTC--CHHHHHHHHHHHHHH
T ss_pred ----------------ecCCeEEEEECCCCchHHH--HHHHHHHhhc--ccCCEEEEEEECCC--CchhHHHHHHHHHHH
Confidence 0255789999999977532 2222221111 34699999999961 222211111111111
Q ss_pred HH------hhCCCceeeecCCCcCChhhhh
Q 024413 227 LY------KTRLPLVLAFNKTDVAQHEFAL 250 (268)
Q Consensus 227 l~------~~~~p~ilV~NK~Dl~~~~~~~ 250 (268)
+. ..+.|+++|+||+|+.+.....
T Consensus 146 ~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~ 175 (193)
T 2ged_A 146 LSITESSCENGIDILIACNKSELFTARPPS 175 (193)
T ss_dssp HHHHHHHSTTCCCEEEEEECTTSTTCCCHH
T ss_pred HhhhhhccccCCCEEEEEEchHhcCCCCHH
Confidence 11 1379999999999998755433
No 121
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.41 E-value=6.3e-13 Score=107.28 Aligned_cols=73 Identities=19% Similarity=0.193 Sum_probs=43.5
Q ss_pred CCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeecCCCcCC
Q 024413 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQ 245 (268)
Q Consensus 166 ~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK~Dl~~ 245 (268)
..+.|+|+||+.++.. ....++ ..+|++++|+|+........ ....+.........+.|+++|+||+|+..
T Consensus 64 ~~~~l~Dt~G~~~~~~------~~~~~~--~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 134 (179)
T 1z0f_A 64 IKLQIWDTAGQERFRA------VTRSYY--RGAAGALMVYDITRRSTYNH-LSSWLTDARNLTNPNTVIILIGNKADLEA 134 (179)
T ss_dssp EEEEEEECTTGGGTCH------HHHHHH--HTCSEEEEEEETTCHHHHHT-HHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred EEEEEEECCCChHhhh------hHHHHh--ccCCEEEEEEeCcCHHHHHH-HHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 3689999999866422 222233 34799999999965422111 11111111122235789999999999975
Q ss_pred hh
Q 024413 246 HE 247 (268)
Q Consensus 246 ~~ 247 (268)
.+
T Consensus 135 ~~ 136 (179)
T 1z0f_A 135 QR 136 (179)
T ss_dssp GC
T ss_pred cc
Confidence 43
No 122
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.41 E-value=2.5e-13 Score=109.42 Aligned_cols=71 Identities=21% Similarity=0.145 Sum_probs=36.8
Q ss_pred CEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHh----hCCCceeeecCCC
Q 024413 167 DYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK----TRLPLVLAFNKTD 242 (268)
Q Consensus 167 ~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~----~~~p~ilV~NK~D 242 (268)
++.|+|+||+.... ...+... ....++++++|+|.... ..+.. .......+.. .++|+++|+||+|
T Consensus 53 ~~~~~D~~g~~~~~-----~~~~~~~-~~~~~~~~i~v~d~~~~---~s~~~-~~~~~~~l~~~~~~~~~piilv~NK~D 122 (175)
T 2nzj_A 53 TLVVVDTWEAEKLD-----KSWSQES-CLQGGSAYVIVYSIADR---GSFES-ASELRIQLRRTHQADHVPIILVGNKAD 122 (175)
T ss_dssp EEEEECCC------------CHHHHH-TTTSCSEEEEEEETTCH---HHHHH-HHHHHHHHHHCC----CCEEEEEECTT
T ss_pred EEEEEecCCCCccc-----hhhhHHh-hcccCCEEEEEEECCCH---HHHHH-HHHHHHHHHHhhccCCCCEEEEEEChh
Confidence 68999999986531 0112121 12347899999998542 22111 1111122222 3789999999999
Q ss_pred cCChh
Q 024413 243 VAQHE 247 (268)
Q Consensus 243 l~~~~ 247 (268)
+.+.+
T Consensus 123 l~~~~ 127 (175)
T 2nzj_A 123 LARCR 127 (175)
T ss_dssp CTTTC
T ss_pred hcccc
Confidence 97653
No 123
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.40 E-value=1.5e-12 Score=109.37 Aligned_cols=121 Identities=21% Similarity=0.351 Sum_probs=70.6
Q ss_pred cCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccchh
Q 024413 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (268)
Q Consensus 67 ~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 146 (268)
.....++|+|++|+|||||++.|.+...... .....+.. .. +
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~----------~~~~~~~~---~~-~------------------------ 51 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT----------VVSQEPLS---AA-D------------------------ 51 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCB----------CCCSSCEE---ET-T------------------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCe----------eeecCceE---EE-E------------------------
Confidence 3456789999999999999999998653310 00000100 00 0
Q ss_pred hhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhc--cCCcEEEEEEcCC-C--cCCchh-hHHHH
Q 024413 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS--TFPTVVTYVVDTP-R--SANPMT-FMSNM 220 (268)
Q Consensus 147 ~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~--~~~d~vv~vvD~~-~--~~~~~~-~~~~~ 220 (268)
.....+.|+|+||+..+.. ....+++. ..++++++|+|+. . .+.... +....
T Consensus 52 ----------------~~~~~~~l~Dt~G~~~~~~------~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~ 109 (218)
T 1nrj_B 52 ----------------YDGSGVTLVDFPGHVKLRY------KLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDI 109 (218)
T ss_dssp ----------------GGGSSCEEEECCCCGGGTH------HHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHH
T ss_pred ----------------eeCceEEEEECCCcHHHHH------HHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHH
Confidence 0245799999999976522 23333322 3468999999997 2 222111 11111
Q ss_pred HHHHHHHHhhCCCceeeecCCCcCChh
Q 024413 221 LYACSILYKTRLPLVLAFNKTDVAQHE 247 (268)
Q Consensus 221 ~~~~~~l~~~~~p~ilV~NK~Dl~~~~ 247 (268)
+.........++|+++|+||+|+....
T Consensus 110 ~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 136 (218)
T 1nrj_B 110 LSITESSCENGIDILIACNKSELFTAR 136 (218)
T ss_dssp HHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred HhcccccccCCCCEEEEEEchHhcccC
Confidence 100000012478999999999998654
No 124
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.40 E-value=1.4e-13 Score=109.99 Aligned_cols=70 Identities=20% Similarity=0.174 Sum_probs=42.6
Q ss_pred CCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHh--hCCCceeeecCCCc
Q 024413 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK--TRLPLVLAFNKTDV 243 (268)
Q Consensus 166 ~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~--~~~p~ilV~NK~Dl 243 (268)
.++.|+|+||+.++.. ....++ ..+|++++++|+........ . ......+.. .+.|+++|+||+|+
T Consensus 54 ~~~~l~Dt~G~~~~~~------~~~~~~--~~~d~~i~v~d~~~~~s~~~-~---~~~~~~i~~~~~~~piilv~nK~Dl 121 (168)
T 1z2a_A 54 VRLMLWDTAGQEEFDA------ITKAYY--RGAQACVLVFSTTDRESFEA-I---SSWREKVVAEVGDIPTALVQNKIDL 121 (168)
T ss_dssp EEEEEECCTTGGGTTC------CCHHHH--TTCCEEEEEEETTCHHHHHT-H---HHHHHHHHHHHCSCCEEEEEECGGG
T ss_pred EEEEEEcCCCcHhHHH------HHHHHh--cCCCEEEEEEECcCHHHHHH-H---HHHHHHHHHhCCCCCEEEEEECccc
Confidence 3689999999876522 111222 35799999999965321111 1 111122211 47899999999999
Q ss_pred CChh
Q 024413 244 AQHE 247 (268)
Q Consensus 244 ~~~~ 247 (268)
.+.+
T Consensus 122 ~~~~ 125 (168)
T 1z2a_A 122 LDDS 125 (168)
T ss_dssp GGGC
T ss_pred Cccc
Confidence 7643
No 125
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.40 E-value=3.9e-13 Score=111.78 Aligned_cols=70 Identities=19% Similarity=0.126 Sum_probs=40.9
Q ss_pred CEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHh----hCCCceeeecCCC
Q 024413 167 DYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK----TRLPLVLAFNKTD 242 (268)
Q Consensus 167 ~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~----~~~p~ilV~NK~D 242 (268)
.+.|||+||+..+.. . ....+++ .+|++++|+|.... ..+.. ....+..+.. ..+|+++|+||+|
T Consensus 73 ~l~i~Dt~g~~~~~~--~---~~~~~~~--~~d~~ilv~d~~~~---~s~~~-~~~~~~~i~~~~~~~~~piilv~nK~D 141 (195)
T 3cbq_A 73 TLVVYDIWEQGDAGG--W---LRDHCLQ--TGDAFLIVFSVTDR---RSFSK-VPETLLRLRAGRPHHDLPVILVGNKSD 141 (195)
T ss_dssp EEEEECCCCCSGGGH--H---HHHHHHH--HCSEEEEEEETTCH---HHHHT-HHHHHHHHHHHSTTSCCCEEEEEECTT
T ss_pred EEEEEecCCCccchh--h---hHHHhhc--cCCEEEEEEECCCH---HHHHH-HHHHHHHHHHhcCCCCCCEEEEeechh
Confidence 578999999976421 0 1112222 36999999998532 22111 1111122221 3789999999999
Q ss_pred cCChh
Q 024413 243 VAQHE 247 (268)
Q Consensus 243 l~~~~ 247 (268)
+.+.+
T Consensus 142 l~~~~ 146 (195)
T 3cbq_A 142 LARSR 146 (195)
T ss_dssp CTTTC
T ss_pred ccccC
Confidence 97543
No 126
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.40 E-value=2.5e-13 Score=111.94 Aligned_cols=122 Identities=18% Similarity=0.189 Sum_probs=70.5
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccch
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 145 (268)
.+.-..++|+|++|+|||||++.|.+..........+ +.+.. .. .+...
T Consensus 20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~-~~~~~----~~--~~~~~------------------------ 68 (191)
T 3dz8_A 20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTV-GIDFK----VK--TVYRH------------------------ 68 (191)
T ss_dssp EEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEE-TTTEE----EE--EEEET------------------------
T ss_pred cCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCe-eeEEE----EE--EEEEC------------------------
Confidence 3455689999999999999999999865432221111 10000 00 00000
Q ss_pred hhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHH
Q 024413 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (268)
Q Consensus 146 ~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~ 225 (268)
.....+.|+|+||+..+.. ....++ ..+|++++|+|.... ..+.. ......
T Consensus 69 -----------------~~~~~~~i~Dt~G~~~~~~------~~~~~~--~~~d~~i~v~d~~~~---~s~~~-~~~~~~ 119 (191)
T 3dz8_A 69 -----------------EKRVKLQIWDTAGQERYRT------ITTAYY--RGAMGFILMYDITNE---ESFNA-VQDWAT 119 (191)
T ss_dssp -----------------TTTEEEEEECHHHHHHCHH------HHHHHH--TTCCEEEEEEETTCH---HHHHT-HHHHHH
T ss_pred -----------------CEEEEEEEEeCCChHHHHH------HHHHHH--ccCCEEEEEEECcCH---HHHHH-HHHHHH
Confidence 0133689999999755421 222223 357999999998642 21111 111122
Q ss_pred HHHh---hCCCceeeecCCCcCChh
Q 024413 226 ILYK---TRLPLVLAFNKTDVAQHE 247 (268)
Q Consensus 226 ~l~~---~~~p~ilV~NK~Dl~~~~ 247 (268)
.+.. .+.|+++|+||+|+.+.+
T Consensus 120 ~i~~~~~~~~piilv~nK~Dl~~~~ 144 (191)
T 3dz8_A 120 QIKTYSWDNAQVILVGNKCDMEEER 144 (191)
T ss_dssp HHHHHSCTTCEEEEEEECTTCGGGC
T ss_pred HHHHhcCCCCCEEEEEECCCCcccc
Confidence 2222 478999999999996543
No 127
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.40 E-value=7.4e-14 Score=113.25 Aligned_cols=72 Identities=18% Similarity=0.166 Sum_probs=39.4
Q ss_pred CEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeecCCCcCCh
Q 024413 167 DYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQH 246 (268)
Q Consensus 167 ~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK~Dl~~~ 246 (268)
.+.|+|+||+.++.. ....++ ..+|++++|+|+........ ....+.........+.|+++|+||+|+.++
T Consensus 61 ~~~~~Dt~G~~~~~~------~~~~~~--~~~d~ii~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 131 (180)
T 2g6b_A 61 KLQMWDTAGQERFRS------VTHAYY--RDAHALLLLYDVTNKASFDN-IQAWLTEIHEYAQHDVALMLLGNKVDSAHE 131 (180)
T ss_dssp EEEEEECCCC--------------CCG--GGCSEEEEEEETTCHHHHHT-HHHHHHHHHHHSCTTCEEEEEEECCSTTSC
T ss_pred EEEEEeCCCcHHHHH------HHHHHc--cCCCEEEEEEECCCHHHHHH-HHHHHHHHHHhCCCCCcEEEEEECcccCcc
Confidence 689999999865421 111111 34799999999965322111 111111011112257899999999999864
Q ss_pred h
Q 024413 247 E 247 (268)
Q Consensus 247 ~ 247 (268)
+
T Consensus 132 ~ 132 (180)
T 2g6b_A 132 R 132 (180)
T ss_dssp C
T ss_pred c
Confidence 3
No 128
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.40 E-value=1.5e-12 Score=107.83 Aligned_cols=74 Identities=18% Similarity=0.246 Sum_probs=44.3
Q ss_pred CCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCch-hhHHHHHHHHHHH--HhhCCCceeeecCC
Q 024413 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPM-TFMSNMLYACSIL--YKTRLPLVLAFNKT 241 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~-~~~~~~~~~~~~l--~~~~~p~ilV~NK~ 241 (268)
...+.|||+||+..+.... +. ...++ ..+|++++|+|+...+... ..+. .....+ ...+.|+++|+||+
T Consensus 68 ~~~l~i~Dt~G~~~~~~~~-~~--~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~---~~l~~~~~~~~~~piilv~nK~ 139 (196)
T 3llu_A 68 FVNFQIWDFPGQMDFFDPT-FD--YEMIF--RGTGALIYVIDAQDDYMEALTRLH---ITVSKAYKVNPDMNFEVFIHKV 139 (196)
T ss_dssp SCCEEEEECCSSCCTTCTT-CC--HHHHH--HTCSEEEEEEETTSCCHHHHHHHH---HHHHHHHHHCTTCEEEEEEECG
T ss_pred eeEEEEEECCCCHHHHhhh-hh--ccccc--ccCCEEEEEEECCCchHHHHHHHH---HHHHHHHhcCCCCcEEEEEecc
Confidence 3579999999997753211 00 02223 2379999999997642111 1111 111222 23478999999999
Q ss_pred CcCCh
Q 024413 242 DVAQH 246 (268)
Q Consensus 242 Dl~~~ 246 (268)
|+.+.
T Consensus 140 Dl~~~ 144 (196)
T 3llu_A 140 DGLSD 144 (196)
T ss_dssp GGSCH
T ss_pred ccCch
Confidence 98764
No 129
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.40 E-value=6.8e-13 Score=112.77 Aligned_cols=127 Identities=18% Similarity=0.275 Sum_probs=70.5
Q ss_pred cCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCccccc-ccchhhHHHHHHHHHHcCCCCCCCcccch
Q 024413 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAA-NIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (268)
Q Consensus 67 ~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 145 (268)
.+...++|+|++|+|||||++.|.+...... . .++.. .+... ...
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~------~-------~~~~t~~~~~~------------------~~~--- 72 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQ------S-------YSFTTKNLYVG------------------HFD--- 72 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEE------C-------C-----CEEEE------------------EEE---
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccC------C-------CCCcceeeeee------------------eee---
Confidence 4567899999999999999999988543211 0 01100 00000 000
Q ss_pred hhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhh--H-HHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHH
Q 024413 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSA--S-GAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLY 222 (268)
Q Consensus 146 ~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~--~-~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~ 222 (268)
..+..+.|+|+||+.+...... . ...+.. + ...+|++++|+|+........ . ....
T Consensus 73 -----------------~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~-~-~~~~d~~i~v~d~~~~~s~~~-~-~~~~ 131 (228)
T 2qu8_A 73 -----------------HKLNKYQIIDTPGLLDRAFENRNTIEMTTITA-L-AHINGVILFIIDISEQCGLTI-K-EQIN 131 (228)
T ss_dssp -----------------ETTEEEEEEECTTTTTSCGGGCCHHHHHHHHH-H-HTSSEEEEEEEETTCTTSSCH-H-HHHH
T ss_pred -----------------cCCCeEEEEECCCCcCcccchhhhHHHHHHHH-h-hccccEEEEEEecccccCcch-H-HHHH
Confidence 0134689999999965321111 1 111222 2 245799999999976433211 0 0111
Q ss_pred HHHHHHhh--CCCceeeecCCCcCChhh
Q 024413 223 ACSILYKT--RLPLVLAFNKTDVAQHEF 248 (268)
Q Consensus 223 ~~~~l~~~--~~p~ilV~NK~Dl~~~~~ 248 (268)
....+... .+|+++|+||+|+.+.++
T Consensus 132 ~~~~l~~~~~~~piilv~nK~Dl~~~~~ 159 (228)
T 2qu8_A 132 LFYSIKSVFSNKSIVIGFNKIDKCNMDS 159 (228)
T ss_dssp HHHHHHTCC-CCCEEEEEECGGGCC--C
T ss_pred HHHHHHHhhcCCcEEEEEeCcccCCchh
Confidence 12334343 789999999999986543
No 130
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.39 E-value=6.9e-13 Score=109.81 Aligned_cols=117 Identities=20% Similarity=0.271 Sum_probs=65.2
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccch
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 145 (268)
.++...++|+|++|+|||||++.+.+..... +. +... .. ...+.
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~----~~----~t~~-~~-~~~~~-------------------------- 69 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVT----TI----PTIG-FN-VETVE-------------------------- 69 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCEE----EE----EETT-EE-EEEEE--------------------------
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCccc----cC----CcCc-ee-EEEEE--------------------------
Confidence 3556789999999999999999997643321 00 0000 00 00000
Q ss_pred hhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHH
Q 024413 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (268)
Q Consensus 146 ~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~ 225 (268)
..+..+.|+|+||+.++.. ....++ ..+|++++|+|+.... .+.........
T Consensus 70 -----------------~~~~~~~i~Dt~G~~~~~~------~~~~~~--~~~d~iilv~D~~~~~---s~~~~~~~l~~ 121 (192)
T 2b6h_A 70 -----------------YKNICFTVWDVGGQDKIRP------LWRHYF--QNTQGLIFVVDSNDRE---RVQESADELQK 121 (192)
T ss_dssp -----------------ETTEEEEEEECC-----CT------THHHHH--HTCCEEEEEEETTCGG---GHHHHHHHHHH
T ss_pred -----------------ECCEEEEEEECCCCHhHHH------HHHHHh--ccCCEEEEEEECCCHH---HHHHHHHHHHH
Confidence 1144789999999976522 122222 3479999999996432 11111111112
Q ss_pred HHH---hhCCCceeeecCCCcCCh
Q 024413 226 ILY---KTRLPLVLAFNKTDVAQH 246 (268)
Q Consensus 226 ~l~---~~~~p~ilV~NK~Dl~~~ 246 (268)
.+. ..+.|+++|+||+|+.+.
T Consensus 122 ~~~~~~~~~~piilv~NK~Dl~~~ 145 (192)
T 2b6h_A 122 MLQEDELRDAVLLVFANKQDMPNA 145 (192)
T ss_dssp HHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HhcccccCCCeEEEEEECCCCCCC
Confidence 222 137899999999999764
No 131
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.39 E-value=1.1e-12 Score=107.43 Aligned_cols=71 Identities=20% Similarity=0.251 Sum_probs=43.2
Q ss_pred CCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHH---hhCCCceeeecCC
Q 024413 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY---KTRLPLVLAFNKT 241 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~---~~~~p~ilV~NK~ 241 (268)
+..+.++|+||+..+.. ....++ ..+|++++|+|+.... .+..........+. ..+.|+++|+||+
T Consensus 59 ~~~l~i~Dt~G~~~~~~------~~~~~~--~~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~piilv~NK~ 127 (181)
T 1fzq_A 59 GFKLNVWDIGGQRKIRP------YWRSYF--ENTDILIYVIDSADRK---RFEETGQELTELLEEEKLSCVPVLIFANKQ 127 (181)
T ss_dssp TEEEEEEECSSCGGGHH------HHHHHH--TTCSEEEEEEETTCGG---GHHHHHHHHHHHTTCGGGTTCCEEEEEECT
T ss_pred CEEEEEEECCCCHHHHH------HHHHHh--CCCCEEEEEEECcCHH---HHHHHHHHHHHHHhChhhcCCCEEEEEECc
Confidence 34689999999876421 222333 4579999999986432 11111111111222 2468999999999
Q ss_pred CcCCh
Q 024413 242 DVAQH 246 (268)
Q Consensus 242 Dl~~~ 246 (268)
|+.+.
T Consensus 128 Dl~~~ 132 (181)
T 1fzq_A 128 DLLTA 132 (181)
T ss_dssp TSTTC
T ss_pred CcccC
Confidence 99764
No 132
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.39 E-value=5.3e-13 Score=124.80 Aligned_cols=75 Identities=28% Similarity=0.274 Sum_probs=42.2
Q ss_pred CCCEEEEeCCCCcchhhhhhHHHHHHHHH--hccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeecCCC
Q 024413 165 HLDYVLVDTPGQIEIFTWSASGAIITEAF--ASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTD 242 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~~~~~~i~~~~--~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK~D 242 (268)
+.++.|+||||+...... ....+.... ....+|++++|+|+..+.+..+.. ....+...++|+++|+||+|
T Consensus 50 ~~~~~l~DT~G~~~~~~~--~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~-----~~~~l~~~~~pvilv~NK~D 122 (436)
T 2hjg_A 50 NYDFNLIDTGGIDIGDEP--FLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEE-----VAKILYRTKKPVVLAVNKLD 122 (436)
T ss_dssp SSCCEEEC---------C--HHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHH-----HHHHHTTCCSCEEEEEECCC
T ss_pred CceEEEEECCCCCCcchh--HHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-----HHHHHHHcCCCEEEEEECcc
Confidence 557999999999632111 111222211 113489999999998877765422 13455567899999999999
Q ss_pred cCCh
Q 024413 243 VAQH 246 (268)
Q Consensus 243 l~~~ 246 (268)
+...
T Consensus 123 ~~~~ 126 (436)
T 2hjg_A 123 NTEM 126 (436)
T ss_dssp C---
T ss_pred Cccc
Confidence 9764
No 133
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.39 E-value=1.4e-13 Score=114.06 Aligned_cols=69 Identities=19% Similarity=0.227 Sum_probs=41.8
Q ss_pred CEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHH----hhCCCceeeecCCC
Q 024413 167 DYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY----KTRLPLVLAFNKTD 242 (268)
Q Consensus 167 ~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~----~~~~p~ilV~NK~D 242 (268)
.+.|+|+||+.++.. ....+++ .+|++++|+|..... .+.. .......+. ..++|+++|+||+|
T Consensus 63 ~~~l~Dt~G~~~~~~------~~~~~~~--~~~~~i~v~d~~~~~---s~~~-~~~~~~~i~~~~~~~~~piilv~nK~D 130 (206)
T 2bov_A 63 QIDILDTAGQEDYAA------IRDNYFR--SGEGFLCVFSITEME---SFAA-TADFREQILRVKEDENVPFLLVGNKSD 130 (206)
T ss_dssp EEEEEECCCTTCCHH------HHHHHHH--HCSEEEEEEETTCHH---HHHH-HHHHHHHHHHHTTCSCCCEEEEEECTT
T ss_pred EEEEEcCCChhhhHH------HHHHHHh--hCCEEEEEEECCCHH---HHHH-HHHHHHHHHHhcCCCCCCEEEEEeccC
Confidence 689999999876522 2222232 369999999986432 1111 111111221 23789999999999
Q ss_pred cCChh
Q 024413 243 VAQHE 247 (268)
Q Consensus 243 l~~~~ 247 (268)
+.+.+
T Consensus 131 l~~~~ 135 (206)
T 2bov_A 131 LEDKR 135 (206)
T ss_dssp CGGGC
T ss_pred ccccc
Confidence 97643
No 134
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.39 E-value=1.7e-12 Score=105.20 Aligned_cols=70 Identities=20% Similarity=0.223 Sum_probs=42.6
Q ss_pred CCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHh---hCCCceeeecCCC
Q 024413 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK---TRLPLVLAFNKTD 242 (268)
Q Consensus 166 ~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~---~~~p~ilV~NK~D 242 (268)
..+.|+|+||+.++.. ....++ ..+|++++|+|+.... .+.. .......+.. ...|+++|+||+|
T Consensus 61 ~~~~i~Dt~G~~~~~~------~~~~~~--~~~d~~i~v~d~~~~~---s~~~-~~~~~~~~~~~~~~~~p~i~v~nK~D 128 (181)
T 2efe_B 61 VKFEIWDTAGQERYHS------LAPMYY--RGAAAAIIVFDVTNQA---SFER-AKKWVQELQAQGNPNMVMALAGNKSD 128 (181)
T ss_dssp EEEEEEECCCSGGGGG------GTHHHH--TTCSEEEEEEETTCHH---HHHH-HHHHHHHHHHHSCTTCEEEEEEECTT
T ss_pred EEEEEEeCCCChhhhh------hhHHHh--ccCCEEEEEEECCCHH---HHHH-HHHHHHHHHHhcCCCCcEEEEEECCc
Confidence 3689999999876522 111222 3479999999985432 1111 1111122222 3788999999999
Q ss_pred cCChh
Q 024413 243 VAQHE 247 (268)
Q Consensus 243 l~~~~ 247 (268)
+.+.+
T Consensus 129 l~~~~ 133 (181)
T 2efe_B 129 LLDAR 133 (181)
T ss_dssp CTTTC
T ss_pred ccccc
Confidence 97643
No 135
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.39 E-value=1.1e-12 Score=120.08 Aligned_cols=65 Identities=12% Similarity=-0.021 Sum_probs=43.5
Q ss_pred cchhhhcHHHHHHHHHHHHHh------cCCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcC
Q 024413 143 TSLNLFTTKFDEVISLIERRA------DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 143 ~~~~~lS~G~~qr~~ia~al~------~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
..+.+|||||+||++||+|++ .+|+++|+|||+...+.........+...+......+++..||.
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~ 345 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDR 345 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCH
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecch
Confidence 457899999999999999999 79999999999875432222222233333333334555555554
No 136
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.39 E-value=8.3e-13 Score=110.91 Aligned_cols=74 Identities=14% Similarity=0.142 Sum_probs=42.1
Q ss_pred CEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeecCCCcCCh
Q 024413 167 DYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQH 246 (268)
Q Consensus 167 ~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK~Dl~~~ 246 (268)
.+.|+|+||+.++.. .. ..++ ..+|++++|+|+.......... ..+.........+.|+++|+||+|+.+.
T Consensus 62 ~~~l~Dt~G~~~~~~--~~----~~~~--~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~ 132 (218)
T 4djt_A 62 KFNVWDTAGQEKKAV--LK----DVYY--IGASGAILFFDVTSRITCQNLA-RWVKEFQAVVGNEAPIVVCANKIDIKNR 132 (218)
T ss_dssp EEEEEEECSGGGTSC--CC----HHHH--TTCSEEEEEEETTCHHHHHTHH-HHHHHHHHHHCSSSCEEEEEECTTCC--
T ss_pred EEEEEecCCchhhch--HH----HHHh--hcCCEEEEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence 589999999876532 11 1112 3479999999996543222211 1111112222346899999999999875
Q ss_pred hhh
Q 024413 247 EFA 249 (268)
Q Consensus 247 ~~~ 249 (268)
++.
T Consensus 133 ~~~ 135 (218)
T 4djt_A 133 QKI 135 (218)
T ss_dssp --C
T ss_pred ccc
Confidence 433
No 137
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.39 E-value=1.3e-12 Score=107.46 Aligned_cols=118 Identities=19% Similarity=0.240 Sum_probs=69.7
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccch
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 145 (268)
.++...++|+|++|+|||||++.|.+........ . +.... ... ..
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~----------~--t~~~~--~~~------------------~~--- 63 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMI----------P--TVGFN--MRK------------------IT--- 63 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCC----------C--CCSEE--EEE------------------EE---
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccC----------C--CCcee--EEE------------------EE---
Confidence 3456789999999999999999999754331100 0 00000 000 00
Q ss_pred hhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHH
Q 024413 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (268)
Q Consensus 146 ~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~ 225 (268)
..+..+.|+|+||+.++.. ....++ ..+|++++|+|+......... ......
T Consensus 64 -----------------~~~~~~~l~Dt~G~~~~~~------~~~~~~--~~~d~ii~v~D~~~~~s~~~~---~~~~~~ 115 (188)
T 1zd9_A 64 -----------------KGNVTIKLWDIGGQPRFRS------MWERYC--RGVSAIVYMVDAADQEKIEAS---KNELHN 115 (188)
T ss_dssp -----------------ETTEEEEEEEECCSHHHHT------THHHHH--TTCSEEEEEEETTCGGGHHHH---HHHHHH
T ss_pred -----------------eCCEEEEEEECCCCHhHHH------HHHHHH--ccCCEEEEEEECCCHHHHHHH---HHHHHH
Confidence 1134689999999866422 222222 457999999999643211111 111112
Q ss_pred HHH---hhCCCceeeecCCCcCCh
Q 024413 226 ILY---KTRLPLVLAFNKTDVAQH 246 (268)
Q Consensus 226 ~l~---~~~~p~ilV~NK~Dl~~~ 246 (268)
.+. ..+.|+++|+||+|+...
T Consensus 116 ~~~~~~~~~~piilv~NK~Dl~~~ 139 (188)
T 1zd9_A 116 LLDKPQLQGIPVLVLGNKRDLPGA 139 (188)
T ss_dssp HHTCGGGTTCCEEEEEECTTSTTC
T ss_pred HHhCcccCCCCEEEEEECCCCccC
Confidence 222 257899999999999754
No 138
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.39 E-value=6.2e-13 Score=107.33 Aligned_cols=72 Identities=22% Similarity=0.192 Sum_probs=42.5
Q ss_pred CEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeecCCCcCCh
Q 024413 167 DYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQH 246 (268)
Q Consensus 167 ~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK~Dl~~~ 246 (268)
.+.|+|+||+.++.. ....++ ..+|++++|+|+........ ....+.........+.|+++|+||+|+.++
T Consensus 64 ~~~~~Dt~G~~~~~~------~~~~~~--~~~d~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 134 (179)
T 2y8e_A 64 RLQLWDTAGQERFRS------LIPSYI--RDSTVAVVVYDITNTNSFHQ-TSKWIDDVRTERGSDVIIMLVGNKTDLSDK 134 (179)
T ss_dssp EEEEEEECCSGGGGG------GSHHHH--HTCSEEEEEEETTCHHHHHT-HHHHHHHHHHHHTTSSEEEEEEECGGGGGG
T ss_pred EEEEEECCCcHHHHH------HHHHHh--cCCCEEEEEEECCCHHHHHH-HHHHHHHHHHhcCCCCcEEEEEECCccccc
Confidence 689999999876532 112222 34799999999864211111 111111011112347899999999999764
Q ss_pred h
Q 024413 247 E 247 (268)
Q Consensus 247 ~ 247 (268)
+
T Consensus 135 ~ 135 (179)
T 2y8e_A 135 R 135 (179)
T ss_dssp C
T ss_pred C
Confidence 3
No 139
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.39 E-value=1.5e-12 Score=104.00 Aligned_cols=69 Identities=19% Similarity=0.231 Sum_probs=42.3
Q ss_pred CCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHH---hhCCCceeeecCCC
Q 024413 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY---KTRLPLVLAFNKTD 242 (268)
Q Consensus 166 ~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~---~~~~p~ilV~NK~D 242 (268)
..+.|+|+||+.++.. ....++ ..+|++++|+|+.... .+.. .......+. ..+.|+++|+||+|
T Consensus 52 ~~~~~~D~~G~~~~~~------~~~~~~--~~~d~~i~v~d~~~~~---s~~~-~~~~~~~~~~~~~~~~piilv~nK~D 119 (170)
T 1ek0_A 52 VKFEIWDTAGQERFAS------LAPXYY--RNAQAALVVYDVTKPQ---SFIK-ARHWVKELHEQASKDIIIALVGNKID 119 (170)
T ss_dssp EEEEEEEECCSGGGGG------GHHHHH--TTCSEEEEEEETTCHH---HHHH-HHHHHHHHHHHSCTTCEEEEEEECGG
T ss_pred EEEEEEECCCChhhhh------hhhhhh--ccCcEEEEEEecCChH---HHHH-HHHHHHHHHHhcCCCCcEEEEEECCC
Confidence 3689999999876522 122223 4579999999996432 1111 111112222 24789999999999
Q ss_pred cCCh
Q 024413 243 VAQH 246 (268)
Q Consensus 243 l~~~ 246 (268)
+...
T Consensus 120 l~~~ 123 (170)
T 1ek0_A 120 XLQE 123 (170)
T ss_dssp GGGS
T ss_pred cccc
Confidence 9754
No 140
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.39 E-value=1.7e-13 Score=111.83 Aligned_cols=68 Identities=18% Similarity=0.118 Sum_probs=38.5
Q ss_pred CEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHH----hhCCCceeeecCCC
Q 024413 167 DYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY----KTRLPLVLAFNKTD 242 (268)
Q Consensus 167 ~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~----~~~~p~ilV~NK~D 242 (268)
.+.|+|+||+.++.. ....+++ .+|++++|+|......... .......+. ..+.|+++|+||+|
T Consensus 53 ~~~i~Dt~G~~~~~~------~~~~~~~--~~~~~i~v~d~~~~~s~~~----~~~~~~~~~~~~~~~~~p~i~v~nK~D 120 (189)
T 4dsu_A 53 LLDILDTAGQEEYSA------MRDQYMR--TGEGFLCVFAINNTKSFED----IHHYREQIKRVKDSEDVPMVLVGNKCD 120 (189)
T ss_dssp EEEEEECCCC---CT------THHHHHH--HCSEEEEEEETTCHHHHHH----HHHHHHHHHHHTTCSCCCEEEEEECTT
T ss_pred EEEEEECCCcHHHHH------HHHHHHh--cCCEEEEEEECCCHHHHHH----HHHHHHHHHHhcCCCCCcEEEEEECcc
Confidence 477899999877532 1222222 2689999999864311111 111112222 24789999999999
Q ss_pred cCCh
Q 024413 243 VAQH 246 (268)
Q Consensus 243 l~~~ 246 (268)
+.+.
T Consensus 121 l~~~ 124 (189)
T 4dsu_A 121 LPSR 124 (189)
T ss_dssp SSSC
T ss_pred Cccc
Confidence 9753
No 141
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.38 E-value=6.8e-13 Score=109.01 Aligned_cols=66 Identities=21% Similarity=0.191 Sum_probs=40.8
Q ss_pred CCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHH-HhhCCCceeeecCCCc
Q 024413 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL-YKTRLPLVLAFNKTDV 243 (268)
Q Consensus 166 ~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l-~~~~~p~ilV~NK~Dl 243 (268)
..+.|+|+||+.++.. ....++ ..+|++++|+|+........ .......+ .....|+++|+||+|+
T Consensus 93 ~~~~i~Dt~G~~~~~~------~~~~~~--~~~d~~i~v~D~~~~~s~~~----~~~~~~~i~~~~~~piilv~NK~D~ 159 (208)
T 3clv_A 93 IKFDIWDTAGQERYAS------IVPLYY--RGATCAIVVFDISNSNTLDR----AKTWVNQLKISSNYIIILVANKIDK 159 (208)
T ss_dssp EEEEEEECTTGGGCTT------THHHHH--TTCSEEEEEEETTCHHHHHH----HHHHHHHHHHHSCCEEEEEEECTTC
T ss_pred eEEEEEECCCcHHHHH------HHHHHh--cCCCEEEEEEECCCHHHHHH----HHHHHHHHHhhCCCcEEEEEECCCc
Confidence 4689999999876532 122222 35799999999965322111 11111222 2345899999999993
No 142
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.38 E-value=7.9e-13 Score=107.29 Aligned_cols=72 Identities=18% Similarity=0.096 Sum_probs=40.7
Q ss_pred CCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHh--hCCCceeeecCCCc
Q 024413 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK--TRLPLVLAFNKTDV 243 (268)
Q Consensus 166 ~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~--~~~p~ilV~NK~Dl 243 (268)
..+.|+|+||+.++... ...+ ...+|++++|+|+.... .+..........+.. .+.|+++|+||+|+
T Consensus 56 ~~~~i~Dt~G~~~~~~~------~~~~--~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 124 (182)
T 3bwd_D 56 VNLGLWDTAGQEDYNRL------RPLS--YRGADVFILAFSLISKA---SYENVSKKWIPELKHYAPGVPIVLVGTKLDL 124 (182)
T ss_dssp --CEEECCCC-CTTTTT------GGGG--GTTCSEEEEEEETTCHH---HHHHHHHTHHHHHHHHCTTCCEEEEEECHHH
T ss_pred EEEEEEECCCChhhhhh------HHhh--ccCCCEEEEEEECCCHH---HHHHHHHHHHHHHHHhCCCCCEEEEEechhh
Confidence 35779999998765221 1111 13479999999985422 211100001122222 37899999999999
Q ss_pred CChhh
Q 024413 244 AQHEF 248 (268)
Q Consensus 244 ~~~~~ 248 (268)
.+.+.
T Consensus 125 ~~~~~ 129 (182)
T 3bwd_D 125 RDDKQ 129 (182)
T ss_dssp HTCHH
T ss_pred hcCcc
Confidence 76543
No 143
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.38 E-value=1.2e-12 Score=105.76 Aligned_cols=117 Identities=20% Similarity=0.301 Sum_probs=72.8
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCccc-ccccchhhHHHHHHHHHHcCCCCCCCcccc
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPF-AANIDIRDTIRYKEVMKQFNLGPNGGILTS 144 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 144 (268)
.++...++|+|++|+|||||++.|.+....... .+. ....... ...
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~-------------~~~~~~~~~~~------------------~~~-- 51 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQE-------------AGGITQHIGAY------------------QVT-- 51 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSS-------------CCSSSTTCCCC------------------EEE--
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCC-------------CCceeEeeeEE------------------EEE--
Confidence 456778999999999999999999986443111 000 0000000 000
Q ss_pred hhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHH
Q 024413 145 LNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC 224 (268)
Q Consensus 145 ~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~ 224 (268)
..+..+.|+|+||+.++.... . .....+|++++|+|+........+. .+
T Consensus 52 ------------------~~~~~~~l~Dt~G~~~~~~~~------~--~~~~~~d~~i~v~d~~~~~~~~~~~-----~l 100 (178)
T 2lkc_A 52 ------------------VNDKKITFLDTPGHEAFTTMR------A--RGAQVTDIVILVVAADDGVMPQTVE-----AI 100 (178)
T ss_dssp ------------------ETTEEEEESCCCSSSSSSCSC------C--SSCCCCCEEEEEEETTCCCCHHHHH-----HH
T ss_pred ------------------eCCceEEEEECCCCHHHHHHH------H--HHHhhCCEEEEEEECCCCCcHHHHH-----HH
Confidence 124468899999987653211 0 0123479999999987654333321 12
Q ss_pred HHHHhhCCCceeeecCCCcCCh
Q 024413 225 SILYKTRLPLVLAFNKTDVAQH 246 (268)
Q Consensus 225 ~~l~~~~~p~ilV~NK~Dl~~~ 246 (268)
..+...++|+++|+||+|+...
T Consensus 101 ~~~~~~~~p~ilv~nK~Dl~~~ 122 (178)
T 2lkc_A 101 NHAKAANVPIIVAINKMDKPEA 122 (178)
T ss_dssp HHHGGGSCCEEEEEETTTSSCS
T ss_pred HHHHhCCCCEEEEEECccCCcC
Confidence 3444568999999999999863
No 144
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.38 E-value=1.6e-12 Score=107.24 Aligned_cols=69 Identities=17% Similarity=0.253 Sum_probs=42.4
Q ss_pred CCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHh---hCCCceeeecCCC
Q 024413 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK---TRLPLVLAFNKTD 242 (268)
Q Consensus 166 ~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~---~~~p~ilV~NK~D 242 (268)
..+.|+|+||+.++.. ....++ ..+|++++|+|..... .+.. .......+.. ..+|+++|+||+|
T Consensus 72 ~~~~i~Dt~G~~~~~~------~~~~~~--~~~d~iilV~d~~~~~---s~~~-~~~~~~~i~~~~~~~~piiiv~NK~D 139 (192)
T 2fg5_A 72 HKFLIWDTAGQERFHS------LAPMYY--RGSAAAVIVYDITKQD---SFYT-LKKWVKELKEHGPENIVMAIAGNKCD 139 (192)
T ss_dssp EEEEEEEECCSGGGGG------GTHHHH--TTCSEEEEEEETTCTH---HHHH-HHHHHHHHHHHSCTTCEEEEEEECGG
T ss_pred EEEEEEcCCCchhhHh------hhHHhh--ccCCEEEEEEeCCCHH---HHHH-HHHHHHHHHHhCCCCCcEEEEEECcc
Confidence 3689999999876532 112222 3479999999985432 2111 1111122222 3789999999999
Q ss_pred cCCh
Q 024413 243 VAQH 246 (268)
Q Consensus 243 l~~~ 246 (268)
+.+.
T Consensus 140 l~~~ 143 (192)
T 2fg5_A 140 LSDI 143 (192)
T ss_dssp GGGG
T ss_pred cccc
Confidence 9753
No 145
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.38 E-value=8.6e-13 Score=104.72 Aligned_cols=68 Identities=21% Similarity=0.182 Sum_probs=40.6
Q ss_pred CCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHH----hhCCCceeeecCC
Q 024413 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY----KTRLPLVLAFNKT 241 (268)
Q Consensus 166 ~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~----~~~~p~ilV~NK~ 241 (268)
..+.|+|+||+.++.. ....++. .+|++++++|.... ..+.. .......+. ..+.|+++|+||+
T Consensus 51 ~~~~~~D~~G~~~~~~------~~~~~~~--~~~~~i~v~d~~~~---~~~~~-~~~~~~~i~~~~~~~~~p~iiv~nK~ 118 (166)
T 2ce2_X 51 CLLDILDTAGQEEYSA------MRDQYMR--TGEGFLCVFAINNT---KSFED-IHQYREQIKRVKDSDDVPMVLVGNKS 118 (166)
T ss_dssp EEEEEEECCCCSSCCH------HHHHHHH--HCSEEEEEEETTCH---HHHHH-HHHHHHHHHHHHTCSCCCEEEEEECT
T ss_pred EEEEEEECCCchhhhH------HHHHhhc--cCCEEEEEEECCCH---HHHHH-HHHHHHHHHHhcCCCCCcEEEEEEch
Confidence 3578999999876522 2222222 36899999998543 21111 111112222 1278999999999
Q ss_pred CcCC
Q 024413 242 DVAQ 245 (268)
Q Consensus 242 Dl~~ 245 (268)
|+.+
T Consensus 119 Dl~~ 122 (166)
T 2ce2_X 119 DLAA 122 (166)
T ss_dssp TCSC
T ss_pred hhhh
Confidence 9876
No 146
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.38 E-value=7.6e-13 Score=114.59 Aligned_cols=126 Identities=17% Similarity=0.166 Sum_probs=72.0
Q ss_pred cCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccchh
Q 024413 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (268)
Q Consensus 67 ~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 146 (268)
.+...++|+|.+|+|||||+|.|+|........... ..+..... ...
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~--------~~T~~~~~---------------------~~~---- 65 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGAT--------SVTRACTT---------------------GSR---- 65 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC-----------------CCSCEE---------------------EEE----
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCC--------CccccEEE---------------------EEE----
Confidence 345678999999999999999999976542211000 00000000 000
Q ss_pred hhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhh--hhHHHHHHHHH--hccCCcEEEEEEcCCCcCCchhhHHHHHH
Q 024413 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTW--SASGAIITEAF--ASTFPTVVTYVVDTPRSANPMTFMSNMLY 222 (268)
Q Consensus 147 ~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~--~~~~~~i~~~~--~~~~~d~vv~vvD~~~~~~~~~~~~~~~~ 222 (268)
...+.++.|+||||+.+.... ......+.+.+ ....+|++++|+|+.. ++..+...
T Consensus 66 ---------------~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~---- 125 (247)
T 3lxw_A 66 ---------------RWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGR-FTAQDQQA---- 125 (247)
T ss_dssp ---------------EETTEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTB-CCHHHHHH----
T ss_pred ---------------EECCcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCC-CCHHHHHH----
Confidence 012457999999999654221 11122333332 2356899999999974 44433211
Q ss_pred HHHHHHh------hCCCceeeecCCCcCCh
Q 024413 223 ACSILYK------TRLPLVLAFNKTDVAQH 246 (268)
Q Consensus 223 ~~~~l~~------~~~p~ilV~NK~Dl~~~ 246 (268)
...+.. ...|+|+|.||+|+...
T Consensus 126 -~~~l~~~~~~~~~~~~iilv~nK~Dl~~~ 154 (247)
T 3lxw_A 126 -VRQVRDMFGEDVLKWMVIVFTRKEDLAGG 154 (247)
T ss_dssp -HHHHHHHHCGGGGGGEEEEEECGGGGTTC
T ss_pred -HHHHHHHhChhhhccEEEEEEchHhcCCC
Confidence 122222 26899999999999753
No 147
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.38 E-value=6.7e-13 Score=124.75 Aligned_cols=122 Identities=25% Similarity=0.254 Sum_probs=68.1
Q ss_pred CeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccchhhh
Q 024413 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (268)
Q Consensus 69 g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l 148 (268)
-.+++|+|.+|+|||||+|.|+|..... ....++.+.-... ...
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~------------v~~~~g~t~~~~~------------------~~~------ 66 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISI------------VEDTPGVTRDRIY------------------SSA------ 66 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC-----------------------CEE------------------EEC------
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcc------------cCCCCCcceeEEE------------------EEE------
Confidence 4689999999999999999999854321 1111111000000 000
Q ss_pred cHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHH--hccCCcEEEEEEcCCCcCCchhhHHHHHHHHHH
Q 024413 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAF--ASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (268)
Q Consensus 149 S~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~--~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~ 226 (268)
-..+..+.|+||||+... .......+.... ....+|++++|+|+..+++..+... ...
T Consensus 67 -------------~~~~~~~~liDT~G~~~~--~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l-----~~~ 126 (456)
T 4dcu_A 67 -------------EWLNYDFNLIDTGGIDIG--DEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEV-----AKI 126 (456)
T ss_dssp -------------TTCSSCCEEECCCC--------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHH-----HHH
T ss_pred -------------EECCceEEEEECCCCCCc--chHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHH-----HHH
Confidence 012557999999997632 111111222111 1134799999999988777665321 355
Q ss_pred HHhhCCCceeeecCCCcCCh
Q 024413 227 LYKTRLPLVLAFNKTDVAQH 246 (268)
Q Consensus 227 l~~~~~p~ilV~NK~Dl~~~ 246 (268)
+...++|+++|+||+|+...
T Consensus 127 l~~~~~pvilV~NK~D~~~~ 146 (456)
T 4dcu_A 127 LYRTKKPVVLAVNKLDNTEM 146 (456)
T ss_dssp HTTCCSCEEEEEECC-----
T ss_pred HHHcCCCEEEEEECccchhh
Confidence 66778999999999998754
No 148
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.38 E-value=8.4e-13 Score=107.64 Aligned_cols=73 Identities=18% Similarity=0.185 Sum_probs=42.8
Q ss_pred CCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeecCCCcCC
Q 024413 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQ 245 (268)
Q Consensus 166 ~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK~Dl~~ 245 (268)
..+.|+|+||+.++.. ....+ ...+|++++|+|+........ ..............+.|+++|+||+|+..
T Consensus 59 ~~~~l~Dt~G~~~~~~------~~~~~--~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 129 (186)
T 2bme_A 59 VKLQIWDTAGQERFRS------VTRSY--YRGAAGALLVYDITSRETYNA-LTNWLTDARMLASQNIVIILCGNKKDLDA 129 (186)
T ss_dssp EEEEEEEECCSGGGHH------HHHTT--STTCSEEEEEEETTCHHHHHT-HHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred EEEEEEeCCCcHHHHH------HHHHH--HhcCCEEEEEEECcCHHHHHH-HHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 3689999999866421 11111 245799999999965322111 11111111122235789999999999975
Q ss_pred hh
Q 024413 246 HE 247 (268)
Q Consensus 246 ~~ 247 (268)
.+
T Consensus 130 ~~ 131 (186)
T 2bme_A 130 DR 131 (186)
T ss_dssp GC
T ss_pred cc
Confidence 43
No 149
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.38 E-value=3.9e-13 Score=111.55 Aligned_cols=70 Identities=17% Similarity=0.148 Sum_probs=42.7
Q ss_pred CCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHh---hCCCceeeecCCC
Q 024413 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK---TRLPLVLAFNKTD 242 (268)
Q Consensus 166 ~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~---~~~p~ilV~NK~D 242 (268)
..+.|+|+||+.++.. ....++ ..+|++++|+|+... ..+.. .......+.. ...|+++|+||+|
T Consensus 57 ~~~~l~Dt~G~~~~~~------~~~~~~--~~~d~ii~v~d~~~~---~s~~~-~~~~~~~i~~~~~~~~piilv~nK~D 124 (203)
T 1zbd_A 57 IKLQIWDTAGLERYRT------ITTAYY--RGAMGFILMYDITNE---ESFNA-VQDWSTQIKTYSWDNAQVLLVGNKCD 124 (203)
T ss_dssp EEEEEEEECCSGGGHH------HHHTTG--GGCSEEEEEEETTCH---HHHHH-HHHHHHHHHHHSCSSCEEEEEEECTT
T ss_pred EEEEEEECCCchhhcc------hHHHhh--cCCCEEEEEEECcCH---HHHHH-HHHHHHHHHHhcCCCCCEEEEEECcc
Confidence 3689999999866421 111112 347999999998643 22111 1111122222 4789999999999
Q ss_pred cCChh
Q 024413 243 VAQHE 247 (268)
Q Consensus 243 l~~~~ 247 (268)
+...+
T Consensus 125 l~~~~ 129 (203)
T 1zbd_A 125 MEDER 129 (203)
T ss_dssp CTTSC
T ss_pred cCccc
Confidence 97643
No 150
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.37 E-value=2.2e-13 Score=109.28 Aligned_cols=71 Identities=15% Similarity=0.115 Sum_probs=39.1
Q ss_pred CEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeecCCCcCCh
Q 024413 167 DYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQH 246 (268)
Q Consensus 167 ~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK~Dl~~~ 246 (268)
.+.|+|+||+.++.. .... ....+|++++|+|......... ....+.........+.|+++|+||+|+.++
T Consensus 56 ~l~i~Dt~G~~~~~~------~~~~--~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 126 (170)
T 1z08_A 56 NLAIWDTAGQERFHA------LGPI--YYRDSNGAILVYDITDEDSFQK-VKNWVKELRKMLGNEICLCIVGNKIDLEKE 126 (170)
T ss_dssp EEEEEECCCC-------------CC--SSTTCSEEEEEEETTCHHHHHH-HHHHHHHHHHHHGGGSEEEEEEECGGGGGG
T ss_pred EEEEEECCCcHhhhh------hHHH--HhccCCEEEEEEECcCHHHHHH-HHHHHHHHHHhcCCCCeEEEEEECcccccc
Confidence 689999999865421 1000 1134799999999864321111 111111111222357899999999999764
No 151
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.37 E-value=1.4e-12 Score=118.73 Aligned_cols=77 Identities=9% Similarity=0.131 Sum_probs=45.9
Q ss_pred CCCEEEEeCCCCcchhh-------hhhHHHHHHHHHhccCCcEEEEEEcCCCcC-CchhhHHHHHHHHHHHHhhCCCcee
Q 024413 165 HLDYVLVDTPGQIEIFT-------WSASGAIITEAFASTFPTVVTYVVDTPRSA-NPMTFMSNMLYACSILYKTRLPLVL 236 (268)
Q Consensus 165 ~~~illlDePG~~~~~~-------~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~-~~~~~~~~~~~~~~~l~~~~~p~il 236 (268)
.+++.|+|+||+..... ..........++ ..++++++++|+.... ...++. .....+...+.|+++
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i--~~~d~iilvv~~~~~~~~~~~~~----~l~~~~~~~~~~~i~ 208 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYI--EKPNCIILAISPANQDLATSDAI----KISREVDPSGDRTFG 208 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHH--HSSSEEEEEEEETTSCGGGCHHH----HHHHHSCTTCTTEEE
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHh--hcCCeEEEEeecccCCcCCHHHH----HHHHHhcccCCCEEE
Confidence 46799999999977521 011122233333 3478888888864321 112211 112334455789999
Q ss_pred eecCCCcCChh
Q 024413 237 AFNKTDVAQHE 247 (268)
Q Consensus 237 V~NK~Dl~~~~ 247 (268)
|+||+|+++++
T Consensus 209 V~nK~Dl~~~~ 219 (360)
T 3t34_A 209 VLTKIDLMDKG 219 (360)
T ss_dssp EEECGGGCCTT
T ss_pred EEeCCccCCCc
Confidence 99999998754
No 152
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.37 E-value=3.2e-13 Score=111.77 Aligned_cols=71 Identities=17% Similarity=0.153 Sum_probs=41.2
Q ss_pred CCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHH-HHHHhhCCCceeeecCCCcC
Q 024413 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC-SILYKTRLPLVLAFNKTDVA 244 (268)
Q Consensus 166 ~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~-~~l~~~~~p~ilV~NK~Dl~ 244 (268)
..+.|+|+||+.+ .. ....+++ .+|++++|+|......... ........ ......+.|+++|+||+|+.
T Consensus 76 ~~~~l~Dt~G~~~-~~------~~~~~~~--~~d~iilv~D~~~~~s~~~-~~~~~~~i~~~~~~~~~piilv~NK~Dl~ 145 (196)
T 2atv_A 76 VSMEILDTAGQED-TI------QREGHMR--WGEGFVLVYDITDRGSFEE-VLPLKNILDEIKKPKNVTLILVGNKADLD 145 (196)
T ss_dssp EEEEEEECCCCCC-CH------HHHHHHH--HCSEEEEEEETTCHHHHHT-HHHHHHHHHHHHTTSCCCEEEEEECGGGG
T ss_pred EEEEEEECCCCCc-cc------chhhhhc--cCCEEEEEEECcCHHHHHH-HHHHHHHHHHhhCCCCCcEEEEEECcccc
Confidence 3689999999876 11 2222222 3699999999864221111 11011101 11123478999999999997
Q ss_pred Ch
Q 024413 245 QH 246 (268)
Q Consensus 245 ~~ 246 (268)
..
T Consensus 146 ~~ 147 (196)
T 2atv_A 146 HS 147 (196)
T ss_dssp GG
T ss_pred cc
Confidence 64
No 153
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.37 E-value=1e-14 Score=124.08 Aligned_cols=105 Identities=11% Similarity=0.004 Sum_probs=63.5
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC--------CCc---c--------------cc-
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV--------MTL---P--------------FA- 115 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~--------~~~---~--------------~~- 115 (268)
..+.+++|++++|+||||||||||+++|+|++ | |.+++ +.+... ... . +.
T Consensus 16 isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~ 91 (218)
T 1z6g_A 16 PRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNEDFLE 91 (218)
T ss_dssp ------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTTCEEE
T ss_pred CceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhccchhh
Confidence 34458899999999999999999999999988 5 77777 433210 000 0 00
Q ss_pred -----cccchhhHHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHH-----HHHHhcCCCEEEEeCCCC
Q 024413 116 -----ANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISL-----IERRADHLDYVLVDTPGQ 176 (268)
Q Consensus 116 -----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~i-----a~al~~~~~illlDePG~ 176 (268)
.+........+.++++...+. .. ...|||||+||+++ +++++.+|++.++|||..
T Consensus 92 ~~~~~~~~~g~~~~~i~~~l~~~~~~----il--~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~ 156 (218)
T 1z6g_A 92 YDNYANNFYGTLKSEYDKAKEQNKIC----LF--EMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLL 156 (218)
T ss_dssp EEEETTEEEEEEHHHHHHHHHTTCEE----EE--EECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHH
T ss_pred hhhcccccCCCcHHHHHHHHhCCCcE----EE--EecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHH
Confidence 000001123445555543211 11 24689999999998 667777777778888754
No 154
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.36 E-value=7.5e-12 Score=112.96 Aligned_cols=156 Identities=19% Similarity=0.170 Sum_probs=92.4
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccch
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 145 (268)
.++|.+++|+||||||||||+++|+|++.+++|.+.+.+.|..... .......+.+..++.-... .
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~----------a~eql~~~~~~~gv~~v~q----~ 191 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAG----------AIEQLEEHAKRIGVKVIKH----S 191 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTT----------HHHHHHHHHHHTTCEEECC----C
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccc----------hHHHHHHHHHHcCceEEec----c
Confidence 3679999999999999999999999999999999999987753211 1111122223344311000 0
Q ss_pred hhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHH
Q 024413 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (268)
Q Consensus 146 ~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~ 225 (268)
..+...+.-+-.+..+...+.+++++|++|..... ......+....+....|-.++++|+..+ .+... ...
T Consensus 192 ~~~~p~~~v~e~l~~~~~~~~d~vliDtaG~~~~~--~~l~~eL~~i~ral~~de~llvLDa~t~---~~~~~----~~~ 262 (328)
T 3e70_C 192 YGADPAAVAYDAIQHAKARGIDVVLIDTAGRSETN--RNLMDEMKKIARVTKPNLVIFVGDALAG---NAIVE----QAR 262 (328)
T ss_dssp TTCCHHHHHHHHHHHHHHHTCSEEEEEECCSCCTT--TCHHHHHHHHHHHHCCSEEEEEEEGGGT---THHHH----HHH
T ss_pred ccCCHHHHHHHHHHHHHhccchhhHHhhccchhHH--HHHHHHHHHHHHHhcCCCCEEEEecHHH---HHHHH----HHH
Confidence 11222232233344444567899999999986531 2222233222223346889999998554 22211 122
Q ss_pred HHHhhCCCceeeecCCCcC
Q 024413 226 ILYKTRLPLVLAFNKTDVA 244 (268)
Q Consensus 226 ~l~~~~~p~ilV~NK~Dl~ 244 (268)
.+...-...++++||.|-.
T Consensus 263 ~~~~~~~it~iilTKlD~~ 281 (328)
T 3e70_C 263 QFNEAVKIDGIILTKLDAD 281 (328)
T ss_dssp HHHHHSCCCEEEEECGGGC
T ss_pred HHHHhcCCCEEEEeCcCCc
Confidence 3333334568999999964
No 155
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.36 E-value=2.4e-12 Score=102.76 Aligned_cols=69 Identities=19% Similarity=0.223 Sum_probs=42.0
Q ss_pred CCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHH---hhCCCceeeecCCC
Q 024413 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY---KTRLPLVLAFNKTD 242 (268)
Q Consensus 166 ~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~---~~~~p~ilV~NK~D 242 (268)
..+.|+|+||+.++.. ....++ ..+|++++|+|+.... .+.. .......+. ....|+++|+||+|
T Consensus 55 ~~~~~~D~~G~~~~~~------~~~~~~--~~~d~~i~v~d~~~~~---s~~~-~~~~~~~~~~~~~~~~~iilv~nK~D 122 (170)
T 1r2q_A 55 VKFEIWDTAGQERYHS------LAPMYY--RGAQAAIVVYDITNEE---SFAR-AKNWVKELQRQASPNIVIALSGNKAD 122 (170)
T ss_dssp EEEEEEEECCSGGGGG------GHHHHH--TTCSEEEEEEETTCHH---HHHH-HHHHHHHHHHHSCTTCEEEEEEECGG
T ss_pred EEEEEEeCCCcHHhhh------hhHHhc--cCCCEEEEEEECCCHH---HHHH-HHHHHHHHHHhcCCCCcEEEEEECcc
Confidence 3689999999876522 122222 4579999999986432 1111 111112222 23688999999999
Q ss_pred cCCh
Q 024413 243 VAQH 246 (268)
Q Consensus 243 l~~~ 246 (268)
+...
T Consensus 123 l~~~ 126 (170)
T 1r2q_A 123 LANK 126 (170)
T ss_dssp GGGG
T ss_pred Cccc
Confidence 9754
No 156
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.36 E-value=1.5e-12 Score=107.59 Aligned_cols=70 Identities=16% Similarity=0.229 Sum_probs=42.3
Q ss_pred CCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHH---hhCCCceeeecCC
Q 024413 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY---KTRLPLVLAFNKT 241 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~---~~~~p~ilV~NK~ 241 (268)
+.++.++|+||+.++.. . ...+ -..+|++++|+|+..... +..........+. ..+.|+++|+||+
T Consensus 66 ~~~~~i~Dt~G~~~~~~--~----~~~~--~~~~d~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~~piilv~NK~ 134 (190)
T 1m2o_B 66 NIKFTTFDLGGHIQARR--L----WKDY--FPEVNGIVFLVDAADPER---FDEARVELDALFNIAELKDVPFVILGNKI 134 (190)
T ss_dssp TEEEEEEECCCSGGGTT--S----GGGG--CTTCCEEEEEEETTCGGG---HHHHHHHHHHHHTCGGGTTCCEEEEEECT
T ss_pred CEEEEEEECCCCHHHHH--H----HHHH--HhcCCEEEEEEECCChHH---HHHHHHHHHHHHcchhhcCCCEEEEEECC
Confidence 34689999999976522 1 1111 135799999999965322 1111111111221 2478999999999
Q ss_pred CcCC
Q 024413 242 DVAQ 245 (268)
Q Consensus 242 Dl~~ 245 (268)
|+.+
T Consensus 135 Dl~~ 138 (190)
T 1m2o_B 135 DAPN 138 (190)
T ss_dssp TSTT
T ss_pred CCcC
Confidence 9975
No 157
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.36 E-value=1.4e-12 Score=124.60 Aligned_cols=135 Identities=16% Similarity=-0.006 Sum_probs=83.6
Q ss_pred cccCCeEEEEEecCCCCHHHHHHHHHhcccCcccE-EEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCccc
Q 024413 65 FKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIR-GYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILT 143 (268)
Q Consensus 65 ~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~-i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 143 (268)
.+.+|.+++|+|+||+|||||+++++|...+.++. +++..++...........+.. + +.++ ...++..... .
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~-~---~~~~-~~~g~~~~~~--~ 349 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGM-D---FEEM-ERQNLLKIVC--A 349 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSC-C---HHHH-HHTTSEEECC--C
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCC-C---HHHH-HhCCCEEEEE--e
Confidence 37899999999999999999999999998876432 566544321000000000000 0 1111 1233322222 2
Q ss_pred chhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhh-----hhhHHHHHHHHHhccCCcEEEEEEcC
Q 024413 144 SLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFT-----WSASGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 144 ~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~-----~~~~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
.+..||+||+||+.+++++..+|+++|+| |...-+.. .......+.+.++.....+++..+|.
T Consensus 350 ~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~ 417 (525)
T 1tf7_A 350 YPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSD 417 (525)
T ss_dssp CGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcc
Confidence 37889999999999999999999999999 97643322 12223334444544445666666665
No 158
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.36 E-value=6.7e-12 Score=112.74 Aligned_cols=36 Identities=14% Similarity=0.074 Sum_probs=31.7
Q ss_pred chhhhcHHHHHHHHHHHHHh----cCCCEEEEeCCCCcch
Q 024413 144 SLNLFTTKFDEVISLIERRA----DHLDYVLVDTPGQIEI 179 (268)
Q Consensus 144 ~~~~lS~G~~qr~~ia~al~----~~~~illlDePG~~~~ 179 (268)
.+..||+||+||++||++++ .+|+++|+|||+....
T Consensus 216 ~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD 255 (322)
T 1e69_A 216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLD 255 (322)
T ss_dssp BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCC
T ss_pred chhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCC
Confidence 37899999999999999997 5789999999988543
No 159
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.36 E-value=8e-13 Score=107.48 Aligned_cols=70 Identities=20% Similarity=0.155 Sum_probs=39.7
Q ss_pred CCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHH----hhCCCceeeecC
Q 024413 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY----KTRLPLVLAFNK 240 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~----~~~~p~ilV~NK 240 (268)
+..+.|+|+||+.++... ...+ ...+|++++|+|+.......... ..+..+. ..+.|+++|+||
T Consensus 61 ~~~~~i~Dt~G~~~~~~~------~~~~--~~~~d~ii~v~d~~~~~s~~~~~----~~~~~~~~~~~~~~~piilv~nK 128 (183)
T 1moz_A 61 NLKLNVWDLGGQTSIRPY------WRCY--YADTAAVIFVVDSTDKDRMSTAS----KELHLMLQEEELQDAALLVFANK 128 (183)
T ss_dssp TEEEEEEEEC----CCTT------GGGT--TTTEEEEEEEEETTCTTTHHHHH----HHHHHHTTSSTTSSCEEEEEEEC
T ss_pred CEEEEEEECCCCHhHHHH------HHHH--hccCCEEEEEEECCCHHHHHHHH----HHHHHHHcChhhCCCeEEEEEEC
Confidence 346899999999764221 1111 13479999999986542222211 1112222 257899999999
Q ss_pred CCcCCh
Q 024413 241 TDVAQH 246 (268)
Q Consensus 241 ~Dl~~~ 246 (268)
+|+.+.
T Consensus 129 ~Dl~~~ 134 (183)
T 1moz_A 129 QDQPGA 134 (183)
T ss_dssp TTSTTC
T ss_pred CCCCCC
Confidence 999764
No 160
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.35 E-value=1.2e-12 Score=109.53 Aligned_cols=71 Identities=18% Similarity=0.138 Sum_probs=41.2
Q ss_pred CEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeecCCCcCCh
Q 024413 167 DYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQH 246 (268)
Q Consensus 167 ~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK~Dl~~~ 246 (268)
.+.|+|+||+..+.. ....+ ...+|++++|+|......... ....+...........|+++|+||+|+.+.
T Consensus 76 ~l~l~Dt~G~~~~~~------~~~~~--~~~~d~~i~v~D~~~~~s~~~-~~~~~~~i~~~~~~~~piilv~NK~Dl~~~ 146 (201)
T 2ew1_A 76 KLQIWDTAGQERFRS------ITQSY--YRSANALILTYDITCEESFRC-LPEWLREIEQYASNKVITVLVGNKIDLAER 146 (201)
T ss_dssp EEEEEEECCSGGGHH------HHGGG--STTCSEEEEEEETTCHHHHHT-HHHHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred EEEEEECCCcHHHHH------HHHHH--HhcCCEEEEEEECCCHHHHHH-HHHHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence 689999999865421 11111 245799999999864321111 111111011112346899999999999754
No 161
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.35 E-value=7.6e-13 Score=108.58 Aligned_cols=71 Identities=18% Similarity=0.171 Sum_probs=43.2
Q ss_pred CCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHh---hCCCceeeecCC
Q 024413 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK---TRLPLVLAFNKT 241 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~---~~~p~ilV~NK~ 241 (268)
+..+.|+|+||+.++.... ..+ ...+|++++|+|+.......... ......+.. .+.|+++|+||+
T Consensus 65 ~~~~~~~Dt~G~~~~~~~~------~~~--~~~~d~ii~v~d~~~~~s~~~~~---~~~~~~~~~~~~~~~piilv~nK~ 133 (189)
T 2x77_A 65 NISFEVWDLGGQTGVRPYW------RCY--FSDTDAVIYVVDSTDRDRMGVAK---HELYALLDEDELRKSLLLIFANKQ 133 (189)
T ss_dssp TEEEEEEEECCSSSSCCCC------SSS--STTCCEEEEEEETTCCTTHHHHH---HHHHHHHTCSTTTTCEEEEEEECT
T ss_pred CEEEEEEECCCCHhHHHHH------HHH--hhcCCEEEEEEeCCCHHHHHHHH---HHHHHHHhhhhcCCCeEEEEEECC
Confidence 4478999999997652210 001 13479999999996542222111 111122222 378999999999
Q ss_pred CcCCh
Q 024413 242 DVAQH 246 (268)
Q Consensus 242 Dl~~~ 246 (268)
|+.+.
T Consensus 134 Dl~~~ 138 (189)
T 2x77_A 134 DLPDA 138 (189)
T ss_dssp TSTTC
T ss_pred CCcCC
Confidence 99765
No 162
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.35 E-value=5.5e-13 Score=109.56 Aligned_cols=70 Identities=17% Similarity=0.131 Sum_probs=42.5
Q ss_pred CCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHh---hCCCceeeecCCC
Q 024413 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK---TRLPLVLAFNKTD 242 (268)
Q Consensus 166 ~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~---~~~p~ilV~NK~D 242 (268)
..+.|+|+||+.++... ...+ ...+|++++|+|+.... .+.. .......+.. ...|+++|+||+|
T Consensus 71 ~~~~l~Dt~G~~~~~~~------~~~~--~~~~d~ii~v~d~~~~~---s~~~-~~~~~~~i~~~~~~~~piilv~nK~D 138 (189)
T 2gf9_A 71 IKLQIWDTAGQERYRTI------TTAY--YRGAMGFLLMYDIANQE---SFAA-VQDWATQIKTYSWDNAQVILVGNKCD 138 (189)
T ss_dssp EEEEEEECCSCCSSCCS------GGGG--GTTCSEEEEEEETTCHH---HHHT-HHHHHHHHHHHSCTTCEEEEEEECTT
T ss_pred EEEEEEeCCCcHHHhhh------HHHh--ccCCCEEEEEEECCCHH---HHHH-HHHHHHHHHHhcCCCCCEEEEEECcc
Confidence 36899999998765221 1111 13579999999985432 1111 1111122222 3789999999999
Q ss_pred cCChh
Q 024413 243 VAQHE 247 (268)
Q Consensus 243 l~~~~ 247 (268)
+.+.+
T Consensus 139 l~~~~ 143 (189)
T 2gf9_A 139 LEDER 143 (189)
T ss_dssp CGGGC
T ss_pred ccccc
Confidence 97643
No 163
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.35 E-value=1.1e-12 Score=108.02 Aligned_cols=118 Identities=19% Similarity=0.283 Sum_probs=68.0
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccch
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 145 (268)
......++|+|++|+|||||++.|.+....... ..+.. ... ... + .
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~------~~~t~---~~~----~~~----------~--------~--- 59 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKH------ITATV---GYN----VET----------F--------E--- 59 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC----C------CCCCS---SEE----EEE----------E--------E---
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCCCcccc------ccccc---cee----EEE----------E--------E---
Confidence 445678999999999999999999986543200 00000 000 000 0 0
Q ss_pred hhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHH
Q 024413 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (268)
Q Consensus 146 ~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~ 225 (268)
..+..+.|||+||+.++... ...+ ...+|++++|+|+......... ... +.
T Consensus 60 -----------------~~~~~~~i~Dt~G~~~~~~~------~~~~--~~~~d~ii~v~D~~~~~s~~~~---~~~-~~ 110 (199)
T 4bas_A 60 -----------------KGRVAFTVFDMGGAKKFRGL------WETY--YDNIDAVIFVVDSSDHLRLCVV---KSE-IQ 110 (199)
T ss_dssp -----------------ETTEEEEEEEECCSGGGGGG------GGGG--CTTCSEEEEEEETTCGGGHHHH---HHH-HH
T ss_pred -----------------eCCEEEEEEECCCCHhHHHH------HHHH--HhcCCEEEEEEECCcHHHHHHH---HHH-HH
Confidence 12447899999999765221 1111 1357999999999653221111 011 12
Q ss_pred HHHh-----------hCCCceeeecCCCcCCh
Q 024413 226 ILYK-----------TRLPLVLAFNKTDVAQH 246 (268)
Q Consensus 226 ~l~~-----------~~~p~ilV~NK~Dl~~~ 246 (268)
.+.. ..+|+++|+||+|+...
T Consensus 111 ~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 142 (199)
T 4bas_A 111 AMLKHEDIRRELPGGGRVPFLFFANKMDAAGA 142 (199)
T ss_dssp HHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC
T ss_pred HHHhChhhhhcccccCCCCEEEEEECcCCCCC
Confidence 2222 27899999999999876
No 164
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.35 E-value=1.1e-12 Score=109.43 Aligned_cols=69 Identities=19% Similarity=0.201 Sum_probs=42.7
Q ss_pred CCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHH---hhCCCceeeecCCC
Q 024413 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY---KTRLPLVLAFNKTD 242 (268)
Q Consensus 166 ~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~---~~~~p~ilV~NK~D 242 (268)
..+.|+|+||+.++.. ....++ ..+|++++|+|..... .+.. .......+. ..+.|+++|+||+|
T Consensus 78 ~~l~i~Dt~G~~~~~~------~~~~~~--~~~d~iilv~D~~~~~---s~~~-~~~~~~~i~~~~~~~~piilv~NK~D 145 (201)
T 2hup_A 78 VKLQIWDTAGQERFRT------ITQSYY--RSANGAILAYDITKRS---SFLS-VPHWIEDVRKYAGSNIVQLLIGNKSD 145 (201)
T ss_dssp EEEEEECCTTCGGGHH------HHHHHH--TTCSEEEEEEETTBHH---HHHT-HHHHHHHHHHHSCTTCEEEEEEECTT
T ss_pred EEEEEEECCCcHhHHH------HHHHHH--hhCCEEEEEEECCCHH---HHHH-HHHHHHHHHHhcCCCCCEEEEEECCc
Confidence 3689999999876522 222233 3579999999985432 1111 111112222 24689999999999
Q ss_pred cCCh
Q 024413 243 VAQH 246 (268)
Q Consensus 243 l~~~ 246 (268)
+...
T Consensus 146 l~~~ 149 (201)
T 2hup_A 146 LSEL 149 (201)
T ss_dssp CGGG
T ss_pred cccc
Confidence 9764
No 165
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.35 E-value=6.9e-12 Score=103.10 Aligned_cols=61 Identities=18% Similarity=0.273 Sum_probs=39.1
Q ss_pred CEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHh----hCCCceeeecCCC
Q 024413 167 DYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK----TRLPLVLAFNKTD 242 (268)
Q Consensus 167 ~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~----~~~p~ilV~NK~D 242 (268)
.+.|||+||+..+. +++ .+|++++|+|.... ..+.. .......+.. ...|+++|+||+|
T Consensus 68 ~l~i~Dt~G~~~~~-----------~~~--~~~~~i~v~d~~~~---~s~~~-~~~~~~~i~~~~~~~~~piilv~nK~D 130 (184)
T 3ihw_A 68 LLLIRDEGGPPELQ-----------FAA--WVDAVVFVFSLEDE---ISFQT-VYNYFLRLCSFRNASEVPMVLVGTQDA 130 (184)
T ss_dssp EEEEEECSSSCCHH-----------HHH--HCSEEEEEEETTCH---HHHHH-HHHHHHHHHTTSCGGGSCEEEEEECTT
T ss_pred EEEEEECCCChhhh-----------eec--CCCEEEEEEECcCH---HHHHH-HHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 57889999997752 222 27999999998643 22111 1111223322 4689999999999
Q ss_pred cC
Q 024413 243 VA 244 (268)
Q Consensus 243 l~ 244 (268)
+.
T Consensus 131 l~ 132 (184)
T 3ihw_A 131 IS 132 (184)
T ss_dssp CB
T ss_pred cc
Confidence 94
No 166
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.35 E-value=1.9e-12 Score=104.69 Aligned_cols=70 Identities=19% Similarity=0.108 Sum_probs=42.0
Q ss_pred CCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHH--hhCCCceeeecCCCc
Q 024413 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY--KTRLPLVLAFNKTDV 243 (268)
Q Consensus 166 ~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~--~~~~p~ilV~NK~Dl 243 (268)
..+.|+|+||+..+.... ..+ ...+|++++|+|+... ..+.. .......+. ....|+++|+||+|+
T Consensus 58 ~~~~i~Dt~G~~~~~~~~------~~~--~~~~d~~i~v~d~~~~---~s~~~-~~~~~~~~~~~~~~~p~ilv~nK~Dl 125 (181)
T 3tw8_B 58 VKLQIWDTAGQERFRTIT------STY--YRGTHGVIVVYDVTSA---ESFVN-VKRWLHEINQNCDDVCRILVGNKNDD 125 (181)
T ss_dssp EEEEEEEETTGGGCSSCC------GGG--GTTCSEEEEEEETTCH---HHHHH-HHHHHHHHHHHCTTSEEEEEEECTTC
T ss_pred EEEEEEcCCCchhhhhhH------HHH--hccCCEEEEEEECCCH---HHHHH-HHHHHHHHHHhCCCCCEEEEEECCCC
Confidence 368999999986642211 011 1447999999999653 22111 111112222 235899999999998
Q ss_pred CChh
Q 024413 244 AQHE 247 (268)
Q Consensus 244 ~~~~ 247 (268)
.+.+
T Consensus 126 ~~~~ 129 (181)
T 3tw8_B 126 PERK 129 (181)
T ss_dssp GGGC
T ss_pred chhc
Confidence 7644
No 167
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.35 E-value=1.1e-12 Score=108.08 Aligned_cols=69 Identities=17% Similarity=0.133 Sum_probs=42.4
Q ss_pred CCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHH---hhCCCceeeecCCC
Q 024413 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY---KTRLPLVLAFNKTD 242 (268)
Q Consensus 166 ~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~---~~~~p~ilV~NK~D 242 (268)
..+.|+|+||+.++.. ....++ ..+|++++|+|+........ .......+. ..+.|+++|+||+|
T Consensus 70 ~~~~i~Dt~G~~~~~~------~~~~~~--~~~d~ii~v~d~~~~~s~~~----~~~~l~~i~~~~~~~~piilv~nK~D 137 (191)
T 2a5j_A 70 IKLQIWDTAGQESFRS------ITRSYY--RGAAGALLVYDITRRETFNH----LTSWLEDARQHSSSNMVIMLIGNKSD 137 (191)
T ss_dssp EEEEEECCTTGGGTSC------CCHHHH--TTCSEEEEEEETTCHHHHHT----HHHHHHHHHHHSCTTCEEEEEEECTT
T ss_pred EEEEEEECCCchhhhh------hHHHHh--ccCCEEEEEEECCCHHHHHH----HHHHHHHHHHhcCCCCCEEEEEECcc
Confidence 3689999999876522 111222 34799999999964321111 111112222 23789999999999
Q ss_pred cCCh
Q 024413 243 VAQH 246 (268)
Q Consensus 243 l~~~ 246 (268)
+.+.
T Consensus 138 l~~~ 141 (191)
T 2a5j_A 138 LESR 141 (191)
T ss_dssp CGGG
T ss_pred cCCc
Confidence 9754
No 168
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.35 E-value=1.3e-12 Score=106.69 Aligned_cols=116 Identities=19% Similarity=0.260 Sum_probs=67.7
Q ss_pred cCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccchh
Q 024413 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (268)
Q Consensus 67 ~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 146 (268)
++...++|+|++|+|||||++.+.+.. .... .+. .... .. ...
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~-------~~t---~~~~----~~------------------~~~---- 58 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTI-------SPT---LGFN----IK------------------TLE---- 58 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSC-------CCC---SSEE----EE------------------EEE----
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcc-------ccc---Cccc----eE------------------EEE----
Confidence 456789999999999999999999754 2110 000 0000 00 000
Q ss_pred hhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHH
Q 024413 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (268)
Q Consensus 147 ~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~ 226 (268)
..+..+.|+|+||+.++.. .... ....+|++++|+|+.......... ......
T Consensus 59 ----------------~~~~~~~~~Dt~G~~~~~~------~~~~--~~~~~d~ii~v~d~~~~~s~~~~~---~~~~~~ 111 (186)
T 1ksh_A 59 ----------------HRGFKLNIWDVGGQKSLRS------YWRN--YFESTDGLIWVVDSADRQRMQDCQ---RELQSL 111 (186)
T ss_dssp ----------------ETTEEEEEEEECCSHHHHT------TGGG--GCTTCSEEEEEEETTCGGGHHHHH---HHHHHH
T ss_pred ----------------ECCEEEEEEECCCCHhHHH------HHHH--HhcCCCEEEEEEECcCHHHHHHHH---HHHHHH
Confidence 1144789999999865421 1111 124579999999996532211110 111122
Q ss_pred HH---hhCCCceeeecCCCcCCh
Q 024413 227 LY---KTRLPLVLAFNKTDVAQH 246 (268)
Q Consensus 227 l~---~~~~p~ilV~NK~Dl~~~ 246 (268)
+. ..+.|+++|+||+|+.+.
T Consensus 112 ~~~~~~~~~piilv~nK~Dl~~~ 134 (186)
T 1ksh_A 112 LVEERLAGATLLIFANKQDLPGA 134 (186)
T ss_dssp HTCGGGTTCEEEEEEECTTSTTC
T ss_pred HhChhcCCCcEEEEEeCccCCCC
Confidence 22 246899999999999765
No 169
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.35 E-value=2.2e-13 Score=112.41 Aligned_cols=68 Identities=19% Similarity=-0.013 Sum_probs=40.7
Q ss_pred CEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHH--hhCCCceeeecCCCcC
Q 024413 167 DYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY--KTRLPLVLAFNKTDVA 244 (268)
Q Consensus 167 ~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~--~~~~p~ilV~NK~Dl~ 244 (268)
.+.|+|+||+.++... ...+ ...+|++++|+|.... ..+..........+. ..+.|+++|+||+|+.
T Consensus 72 ~~~i~Dt~G~~~~~~~------~~~~--~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 140 (194)
T 3reg_A 72 ILHLWDTAGQEEYDRL------RPLS--YADSDVVLLCFAVNNR---TSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLR 140 (194)
T ss_dssp EEEEEEECCSGGGTTT------GGGG--CTTCSEEEEEEETTCH---HHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGC
T ss_pred EEEEEECCCcHHHHHH------hHhh--ccCCcEEEEEEECCCH---HHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhc
Confidence 5799999998765221 1111 2347999999998643 221110011112222 2368999999999997
Q ss_pred C
Q 024413 245 Q 245 (268)
Q Consensus 245 ~ 245 (268)
+
T Consensus 141 ~ 141 (194)
T 3reg_A 141 K 141 (194)
T ss_dssp C
T ss_pred c
Confidence 5
No 170
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.35 E-value=8.8e-13 Score=109.80 Aligned_cols=70 Identities=14% Similarity=0.235 Sum_probs=39.3
Q ss_pred CCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHH---hhCCCceeeecCC
Q 024413 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY---KTRLPLVLAFNKT 241 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~---~~~~p~ilV~NK~ 241 (268)
+.++.++|+||+.++.. ....++ ..+|++++|+|+.... .+..........+. ..++|+++|+||+
T Consensus 68 ~~~l~i~Dt~G~~~~~~------~~~~~~--~~~d~~i~v~D~~~~~---s~~~~~~~~~~~~~~~~~~~~piilv~NK~ 136 (198)
T 1f6b_A 68 GMTFTTFDLGGHIQARR------VWKNYL--PAINGIVFLVDCADHE---RLLESKEELDSLMTDETIANVPILILGNKI 136 (198)
T ss_dssp TEEEEEEEECC----CC------GGGGGG--GGCSEEEEEEETTCGG---GHHHHHHHHHHHHTCGGGTTSCEEEEEECT
T ss_pred CEEEEEEECCCcHhhHH------HHHHHH--hcCCEEEEEEECCCHH---HHHHHHHHHHHHHhCcccCCCcEEEEEECC
Confidence 34789999999876522 111111 2479999999996432 22111111112221 2478999999999
Q ss_pred CcCC
Q 024413 242 DVAQ 245 (268)
Q Consensus 242 Dl~~ 245 (268)
|+.+
T Consensus 137 Dl~~ 140 (198)
T 1f6b_A 137 DRPE 140 (198)
T ss_dssp TSTT
T ss_pred Cccc
Confidence 9975
No 171
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.34 E-value=1.6e-12 Score=107.38 Aligned_cols=73 Identities=16% Similarity=0.156 Sum_probs=43.2
Q ss_pred CCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeecCCCcCC
Q 024413 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQ 245 (268)
Q Consensus 166 ~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK~Dl~~ 245 (268)
..+.|+|+||+.++.. ....++ ..+|++++|+|+......... .............+.|+++|+||+|+.+
T Consensus 75 ~~l~l~Dt~G~~~~~~------~~~~~~--~~~d~iilV~D~~~~~s~~~~-~~~~~~i~~~~~~~~piilV~NK~Dl~~ 145 (192)
T 2il1_A 75 IRLQIWDTAGQERFNS------ITSAYY--RSAKGIILVYDITKKETFDDL-PKWMKMIDKYASEDAELLLVGNKLDCET 145 (192)
T ss_dssp EEEEEEEECCSGGGHH------HHHHHH--HHCSEEEEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred EEEEEEeCCCcHHHHH------HHHHHh--cCCCEEEEEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 3689999999866522 222233 236999999998653221111 1111111122234789999999999976
Q ss_pred hh
Q 024413 246 HE 247 (268)
Q Consensus 246 ~~ 247 (268)
.+
T Consensus 146 ~~ 147 (192)
T 2il1_A 146 DR 147 (192)
T ss_dssp GC
T ss_pred cc
Confidence 43
No 172
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.34 E-value=1.9e-12 Score=106.57 Aligned_cols=69 Identities=19% Similarity=0.166 Sum_probs=42.6
Q ss_pred CCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHH---hhCCCceeeecCCC
Q 024413 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY---KTRLPLVLAFNKTD 242 (268)
Q Consensus 166 ~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~---~~~~p~ilV~NK~D 242 (268)
..+.|+|+||+.++.. ....++ ..+|++++|+|+........ .......+. ....|+++|+||+|
T Consensus 74 ~~~~i~Dt~G~~~~~~------~~~~~~--~~~d~vi~v~D~~~~~s~~~----~~~~l~~i~~~~~~~~piilv~nK~D 141 (193)
T 2oil_A 74 VKAQIWDTAGLERYRA------ITSAYY--RGAVGALLVFDLTKHQTYAV----VERWLKELYDHAEATIVVMLVGNKSD 141 (193)
T ss_dssp EEEEEEEESCCCTTCT------THHHHH--TTCCEEEEEEETTCHHHHHT----HHHHHHHHHTTSCTTCEEEEEEECGG
T ss_pred EEEEEEeCCCchhhhh------hhHHHh--ccCCEEEEEEECCCHHHHHH----HHHHHHHHHHhcCCCCeEEEEEECCC
Confidence 3689999999976522 122222 34799999999964321111 111112222 23689999999999
Q ss_pred cCCh
Q 024413 243 VAQH 246 (268)
Q Consensus 243 l~~~ 246 (268)
+...
T Consensus 142 l~~~ 145 (193)
T 2oil_A 142 LSQA 145 (193)
T ss_dssp GGGG
T ss_pred cccc
Confidence 9764
No 173
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.34 E-value=4.3e-13 Score=110.02 Aligned_cols=68 Identities=19% Similarity=0.103 Sum_probs=37.0
Q ss_pred CCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHH----hhCCCceeeecCC
Q 024413 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY----KTRLPLVLAFNKT 241 (268)
Q Consensus 166 ~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~----~~~~p~ilV~NK~ 241 (268)
..+.|+|+||+.++.. ....+ ...+|++++|+|.......... ......+. ..++|+++|+||+
T Consensus 69 ~~~~l~Dt~G~~~~~~------~~~~~--~~~~d~~i~v~d~~~~~s~~~~----~~~~~~i~~~~~~~~~p~ilv~nK~ 136 (190)
T 3con_A 69 CLLDILDTAGQEEYSA------MRDQY--MRTGEGFLCVFAINNSKSFADI----NLYREQIKRVKDSDDVPMVLVGNKC 136 (190)
T ss_dssp EEEEEEECCC-------------------CTTCSEEEEEEETTCHHHHHHH----HHHHHHHHHHHTCSCCCEEEEEECT
T ss_pred EEEEEEECCChHHHHH------HHHHh--hCcCCEEEEEEECcCHHHHHHH----HHHHHHHHHHhCCCCCeEEEEEECC
Confidence 3589999999865421 11111 2447999999998643221111 11111221 2368999999999
Q ss_pred CcCC
Q 024413 242 DVAQ 245 (268)
Q Consensus 242 Dl~~ 245 (268)
|+..
T Consensus 137 Dl~~ 140 (190)
T 3con_A 137 DLPT 140 (190)
T ss_dssp TCSC
T ss_pred cCCc
Confidence 9875
No 174
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.34 E-value=1.1e-12 Score=110.14 Aligned_cols=70 Identities=23% Similarity=0.222 Sum_probs=42.1
Q ss_pred CCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHh----hCCCceeeecCC
Q 024413 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK----TRLPLVLAFNKT 241 (268)
Q Consensus 166 ~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~----~~~p~ilV~NK~ 241 (268)
..+.|||+||+.++.. ....++ ..+|++++|+|+... ..+.. ....+..+.. ..+|+++|+||+
T Consensus 84 ~~l~l~Dt~G~~~~~~------~~~~~~--~~~d~iilV~D~~~~---~s~~~-~~~~l~~i~~~~~~~~~piilV~NK~ 151 (217)
T 2f7s_A 84 VHLQLWDTAGQERFRS------LTTAFF--RDAMGFLLMFDLTSQ---QSFLN-VRNWMSQLQANAYCENPDIVLIGNKA 151 (217)
T ss_dssp EEEEEEEEESHHHHHH------HHHHHH--TTCCEEEEEEETTCH---HHHHH-HHHHHHTCCCCCTTTCCEEEEEEECT
T ss_pred EEEEEEECCCcHhHHh------HHHHHh--cCCCEEEEEEECcCH---HHHHH-HHHHHHHHHHhcCcCCCCEEEEEECC
Confidence 4689999999755421 222223 457999999998542 22111 1111111211 468999999999
Q ss_pred CcCChh
Q 024413 242 DVAQHE 247 (268)
Q Consensus 242 Dl~~~~ 247 (268)
|+...+
T Consensus 152 Dl~~~~ 157 (217)
T 2f7s_A 152 DLPDQR 157 (217)
T ss_dssp TCGGGC
T ss_pred cccccc
Confidence 997643
No 175
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.34 E-value=2.5e-12 Score=104.99 Aligned_cols=81 Identities=17% Similarity=0.156 Sum_probs=45.8
Q ss_pred CEEEEeCCCCcchhh-----hhhHHHHHHHHHh--ccCCcEEEEEEcCCCcCCchhhHHH------HHHHHHHHHhhCCC
Q 024413 167 DYVLVDTPGQIEIFT-----WSASGAIITEAFA--STFPTVVTYVVDTPRSANPMTFMSN------MLYACSILYKTRLP 233 (268)
Q Consensus 167 ~illlDePG~~~~~~-----~~~~~~~i~~~~~--~~~~d~vv~vvD~~~~~~~~~~~~~------~~~~~~~l~~~~~p 233 (268)
++.|+|+||+..... ..........+++ ...++++++++|..........+.. .......+...+.|
T Consensus 45 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 124 (190)
T 2cxx_A 45 NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIP 124 (190)
T ss_dssp TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCC
T ss_pred CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCc
Confidence 689999999643311 1112223333343 3446899999998542221111110 01112334456899
Q ss_pred ceeeecCCCcCChh
Q 024413 234 LVLAFNKTDVAQHE 247 (268)
Q Consensus 234 ~ilV~NK~Dl~~~~ 247 (268)
+++|+||+|+....
T Consensus 125 iilv~nK~Dl~~~~ 138 (190)
T 2cxx_A 125 TIVAVNKLDKIKNV 138 (190)
T ss_dssp EEEEEECGGGCSCH
T ss_pred eEEEeehHhccCcH
Confidence 99999999998754
No 176
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.34 E-value=1.3e-12 Score=123.09 Aligned_cols=126 Identities=19% Similarity=0.292 Sum_probs=68.9
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccch
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 145 (268)
.+.+..++|+|++|+|||||+|.|++.... .....+.. .++... ..+.
T Consensus 221 ~r~~~kV~ivG~~nvGKSSLln~L~~~~~a------------~v~~~~gt----T~d~~~-----~~i~----------- 268 (462)
T 3geh_A 221 LRTGLKVAIVGRPNVGKSSLLNAWSQSDRA------------IVTDLPGT----TRDVVE-----SQLV----------- 268 (462)
T ss_dssp HHHCEEEEEEECTTSSHHHHHHHHHHHHBS------------CCSCCTTC----CHHHHH-----HEEE-----------
T ss_pred hcCCCEEEEEcCCCCCHHHHHHHHhCCCcc------------cccCCCCe----eEEEEE-----EEEE-----------
Confidence 566788999999999999999999986543 12222222 111110 0111
Q ss_pred hhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHH-HHHHHh-ccCCcEEEEEEcCCCcCCchhhHHHHHHH
Q 024413 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAI-ITEAFA-STFPTVVTYVVDTPRSANPMTFMSNMLYA 223 (268)
Q Consensus 146 ~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~-i~~~~~-~~~~d~vv~vvD~~~~~~~~~~~~~~~~~ 223 (268)
..+.++.|+||||+.++.. ..... +..... ...+|++++|+|+...+...+.. .
T Consensus 269 -----------------~~g~~v~liDT~G~~~~~~--~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~--i--- 324 (462)
T 3geh_A 269 -----------------VGGIPVQVLDTAGIRETSD--QVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQE--I--- 324 (462)
T ss_dssp -----------------ETTEEEEECC----------------------CCCCSCSEEEEEEETTTCSCHHHHH--H---
T ss_pred -----------------ECCEEEEEEECCccccchh--HHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHH--H---
Confidence 1245789999999976422 11111 112221 24579999999998765544311 1
Q ss_pred HHHHHhhCCCceeeecCCCcCChhhh
Q 024413 224 CSILYKTRLPLVLAFNKTDVAQHEFA 249 (268)
Q Consensus 224 ~~~l~~~~~p~ilV~NK~Dl~~~~~~ 249 (268)
+..+ ..+|+++|+||+|+.+....
T Consensus 325 ~~~l--~~~piivV~NK~Dl~~~~~~ 348 (462)
T 3geh_A 325 YEQV--KHRPLILVMNKIDLVEKQLI 348 (462)
T ss_dssp HHHH--TTSCEEEEEECTTSSCGGGS
T ss_pred HHhc--cCCcEEEEEECCCCCcchhh
Confidence 1222 24799999999999876543
No 177
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.34 E-value=1.8e-12 Score=107.85 Aligned_cols=69 Identities=16% Similarity=0.045 Sum_probs=42.2
Q ss_pred CEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHH---hhCCCceeeecCCCc
Q 024413 167 DYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY---KTRLPLVLAFNKTDV 243 (268)
Q Consensus 167 ~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~---~~~~p~ilV~NK~Dl 243 (268)
.+.|+|+||+.++... ...+ ...+|++++|+|+........ .......+. ....|+++|+||+|+
T Consensus 58 ~~~l~Dt~G~~~~~~~------~~~~--~~~~d~vilv~d~~~~~s~~~----~~~~~~~i~~~~~~~~piilv~nK~Dl 125 (206)
T 2bcg_Y 58 KLQIWDTAGQERFRTI------TSSY--YRGSHGIIIVYDVTDQESFNG----VKMWLQEIDRYATSTVLKLLVGNKCDL 125 (206)
T ss_dssp EEEEECCTTTTTTTCC------CGGG--GTTCSEEEEEEETTCHHHHHH----HHHHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred EEEEEeCCChHHHHHH------HHHh--ccCCCEEEEEEECcCHHHHHH----HHHHHHHHHHhcCCCCCEEEEEECCCC
Confidence 6899999998765221 1111 134799999999965322111 111112222 246899999999999
Q ss_pred CChh
Q 024413 244 AQHE 247 (268)
Q Consensus 244 ~~~~ 247 (268)
.+.+
T Consensus 126 ~~~~ 129 (206)
T 2bcg_Y 126 KDKR 129 (206)
T ss_dssp TTTC
T ss_pred cccc
Confidence 7643
No 178
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.34 E-value=2e-12 Score=121.03 Aligned_cols=124 Identities=22% Similarity=0.303 Sum_probs=71.4
Q ss_pred CCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccchhh
Q 024413 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (268)
Q Consensus 68 ~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 147 (268)
....++|+|+||||||||+|+|+|..... ....+..+ ++. .....
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~------------v~~~~gtT----~d~--------------~~~~i----- 223 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERAL------------VSPIPGTT----RDP--------------VDDEV----- 223 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEE------------ECCCC------------------------CCEEE-----
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccc------------cCCCCCCc----CCc--------------eEEEE-----
Confidence 34689999999999999999999976421 11111110 000 00000
Q ss_pred hcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhh----h--HHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHH
Q 024413 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWS----A--SGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNML 221 (268)
Q Consensus 148 lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~----~--~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~ 221 (268)
...+.++.++||||+....... . .......++ ..+|++++++|+.......+..
T Consensus 224 --------------~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i--~~ad~vllv~d~~~~~~~~~~~---- 283 (439)
T 1mky_A 224 --------------FIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSI--EKADVVVIVLDATQGITRQDQR---- 283 (439)
T ss_dssp --------------EETTEEEEESSCSCC-----------CCSCCHHHHHHH--HHCSEEEEEEETTTCCCHHHHH----
T ss_pred --------------EECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHH--hhCCEEEEEEeCCCCCCHHHHH----
Confidence 0124468899999985432110 0 000111222 3379999999998765544321
Q ss_pred HHHHHHHhhCCCceeeecCCCcCChh
Q 024413 222 YACSILYKTRLPLVLAFNKTDVAQHE 247 (268)
Q Consensus 222 ~~~~~l~~~~~p~ilV~NK~Dl~~~~ 247 (268)
....+...++|+++|+||+|+.+.+
T Consensus 284 -i~~~l~~~~~~~ilv~NK~Dl~~~~ 308 (439)
T 1mky_A 284 -MAGLMERRGRASVVVFNKWDLVVHR 308 (439)
T ss_dssp -HHHHHHHTTCEEEEEEECGGGSTTG
T ss_pred -HHHHHHHcCCCEEEEEECccCCCch
Confidence 1344556789999999999998654
No 179
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.34 E-value=5e-12 Score=115.66 Aligned_cols=82 Identities=17% Similarity=0.213 Sum_probs=44.9
Q ss_pred CCCEEEEeCCCCcchhhhhhHHHHHHHHHh-ccCCcEEEEEEcCCCcCC-chhhHHHHHHHHHHHHhhCCCceeeecCCC
Q 024413 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFA-STFPTVVTYVVDTPRSAN-PMTFMSNMLYACSILYKTRLPLVLAFNKTD 242 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~~~~~~i~~~~~-~~~~d~vv~vvD~~~~~~-~~~~~~~~~~~~~~l~~~~~p~ilV~NK~D 242 (268)
+.++.++||||+....+.... ......+. ...+|++++|+|++.... ...........+..+...++|+++|+||+|
T Consensus 225 g~~v~l~DT~G~i~~lp~~lv-e~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~D 303 (364)
T 2qtf_A 225 NRKIMLVDTVGFIRGIPPQIV-DAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKID 303 (364)
T ss_dssp TEEEEEEECCCBCSSCCGGGH-HHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGG
T ss_pred CEEEEEEeCCCchhcCCHHHH-HHHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCC
Confidence 346899999998543222111 11222222 245899999999865321 111111111112222224789999999999
Q ss_pred cCChh
Q 024413 243 VAQHE 247 (268)
Q Consensus 243 l~~~~ 247 (268)
+.+..
T Consensus 304 l~~~~ 308 (364)
T 2qtf_A 304 KINGD 308 (364)
T ss_dssp GCCSC
T ss_pred CCCch
Confidence 98643
No 180
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.34 E-value=3e-13 Score=113.08 Aligned_cols=71 Identities=15% Similarity=0.060 Sum_probs=42.7
Q ss_pred CEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHh--hCCCceeeecCCCcC
Q 024413 167 DYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK--TRLPLVLAFNKTDVA 244 (268)
Q Consensus 167 ~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~--~~~p~ilV~NK~Dl~ 244 (268)
.+.|+|+||+.++... ... ....+|++++|+|+.... .+..........+.. .++|+++|+||+|+.
T Consensus 79 ~l~i~Dt~G~~~~~~~------~~~--~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 147 (204)
T 4gzl_A 79 NLGLWDTAGLEDYDRL------RPL--SYPQTDVFLICFSLVSPA---SFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 147 (204)
T ss_dssp EEEEEEECCSGGGTTT------GGG--GCTTCSEEEEEEETTCHH---HHHHHHHTHHHHHHHHCSSCCEEEEEECHHHH
T ss_pred EEEEEECCCchhhHHH------HHH--HhccCCEEEEEEECCCHH---HHHHHHHHHHHHHHHhCCCCCEEEEEechhhc
Confidence 4669999999765221 111 124579999999996432 211110011223333 379999999999997
Q ss_pred Chhh
Q 024413 245 QHEF 248 (268)
Q Consensus 245 ~~~~ 248 (268)
+...
T Consensus 148 ~~~~ 151 (204)
T 4gzl_A 148 DDKD 151 (204)
T ss_dssp TCHH
T ss_pred cchh
Confidence 6543
No 181
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.34 E-value=4e-12 Score=111.21 Aligned_cols=86 Identities=17% Similarity=0.167 Sum_probs=62.4
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCc-ccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccc
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSR-NIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTS 144 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~-~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 144 (268)
+++|++++|+||||||||||+++|+|++.++ +|.+.+.+.+.... ... ....... ..+++.
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~--~~~-~~~~v~q-------~~~gl~-------- 83 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYV--FKH-KKSIVNQ-------REVGED-------- 83 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSC--CCC-SSSEEEE-------EEBTTT--------
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceee--cCC-cceeeeH-------HHhCCC--------
Confidence 6789999999999999999999999999998 89999988764321 100 0000000 012222
Q ss_pred hhhhcHHHHHHHHHHHHHhcCCCEEEEeCCC
Q 024413 145 LNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (268)
Q Consensus 145 ~~~lS~G~~qr~~ia~al~~~~~illlDePG 175 (268)
...| ++++++++..+|+++|+|||.
T Consensus 84 ~~~l------~~~la~aL~~~p~illlDEp~ 108 (261)
T 2eyu_A 84 TKSF------ADALRAALREDPDVIFVGEMR 108 (261)
T ss_dssp BSCH------HHHHHHHHHHCCSEEEESCCC
T ss_pred HHHH------HHHHHHHHhhCCCEEEeCCCC
Confidence 1122 789999999999999999998
No 182
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.33 E-value=1.1e-12 Score=105.01 Aligned_cols=67 Identities=21% Similarity=0.162 Sum_probs=40.7
Q ss_pred CEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHH---hhCCCceeeecCCCc
Q 024413 167 DYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY---KTRLPLVLAFNKTDV 243 (268)
Q Consensus 167 ~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~---~~~~p~ilV~NK~Dl 243 (268)
.+.|+|+||+.++.. ....++ ..+|++++|+|+........ .......+. ..+.|+++|+||+|+
T Consensus 53 ~~~l~D~~G~~~~~~------~~~~~~--~~~d~~i~v~d~~~~~s~~~----~~~~~~~i~~~~~~~~piilv~nK~Dl 120 (170)
T 1g16_A 53 KLQIWDTAGQERFRT------ITTAYY--RGAMGIILVYDITDERTFTN----IKQWFKTVNEHANDEAQLLLVGNKSDM 120 (170)
T ss_dssp EEEEECCTTGGGTSC------CCHHHH--TTEEEEEEEEETTCHHHHHT----HHHHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred EEEEEeCCCChhhhh------hHHHHh--ccCCEEEEEEECCCHHHHHH----HHHHHHHHHHhcCCCCcEEEEEECccC
Confidence 689999999866522 111222 34799999999864321111 111112222 247899999999999
Q ss_pred CC
Q 024413 244 AQ 245 (268)
Q Consensus 244 ~~ 245 (268)
..
T Consensus 121 ~~ 122 (170)
T 1g16_A 121 ET 122 (170)
T ss_dssp TT
T ss_pred Cc
Confidence 43
No 183
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.33 E-value=7.1e-13 Score=107.17 Aligned_cols=69 Identities=17% Similarity=0.084 Sum_probs=41.4
Q ss_pred CCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHh-----hCCC-ceeeec
Q 024413 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK-----TRLP-LVLAFN 239 (268)
Q Consensus 166 ~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~-----~~~p-~ilV~N 239 (268)
..+.|+|+||+..+.. ....++ ..+|++++|+|+........ . ......+.. ...| +++|+|
T Consensus 56 ~~~~~~Dt~G~~~~~~------~~~~~~--~~~d~~i~v~d~~~~~s~~~-~---~~~~~~i~~~~~~~~~~~~iilv~n 123 (178)
T 2hxs_A 56 VTLQIWDIGGQTIGGK------MLDKYI--YGAQGVLLVYDITNYQSFEN-L---EDWYTVVKKVSEESETQPLVALVGN 123 (178)
T ss_dssp EEEEEEECTTCCTTCT------THHHHH--TTCSEEEEEEETTCHHHHHT-H---HHHHHHHHHHHHHHTCCCEEEEEEE
T ss_pred EEEEEEECCCCccccc------hhhHHH--hhCCEEEEEEECCCHHHHHH-H---HHHHHHHHHHhcccCCCCeEEEEEE
Confidence 4689999999976532 122223 34799999999965322111 1 111112211 2566 789999
Q ss_pred CCCcCCh
Q 024413 240 KTDVAQH 246 (268)
Q Consensus 240 K~Dl~~~ 246 (268)
|+|+.+.
T Consensus 124 K~Dl~~~ 130 (178)
T 2hxs_A 124 KIDLEHM 130 (178)
T ss_dssp CGGGGGG
T ss_pred ccccccc
Confidence 9999754
No 184
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.33 E-value=1.3e-12 Score=108.33 Aligned_cols=122 Identities=21% Similarity=0.276 Sum_probs=64.8
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccc-cccchhhHHHHHHHHHHcCCCCCCCcccc
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFA-ANIDIRDTIRYKEVMKQFNLGPNGGILTS 144 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 144 (268)
.++...++|+|++|+|||||++.|.+..........+ + ..+. ..+.+.
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~-~-------~~~~~~~~~~~----------------------- 73 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATL-G-------VDFQMKTLIVD----------------------- 73 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC------------------CEEEEEEET-----------------------
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCc-c-------ceeEEEEEEEC-----------------------
Confidence 3456789999999999999999999865331100000 0 0000 000000
Q ss_pred hhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHH
Q 024413 145 LNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC 224 (268)
Q Consensus 145 ~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~ 224 (268)
-....+.|+|+||+.++.. ....+++ .+|++++|+|+......... ...+...
T Consensus 74 ------------------~~~~~l~i~Dt~G~~~~~~------~~~~~~~--~~d~iilv~d~~~~~s~~~~-~~~~~~i 126 (199)
T 2p5s_A 74 ------------------GERTVLQLWDTAGQERFRS------IAKSYFR--KADGVLLLYDVTCEKSFLNI-REWVDMI 126 (199)
T ss_dssp ------------------TEEEEEEEEECTTCTTCHH------HHHHHHH--HCSEEEEEEETTCHHHHHTH-HHHHHHH
T ss_pred ------------------CEEEEEEEEECCCCcchhh------hHHHHHh--hCCEEEEEEECCChHHHHHH-HHHHHHH
Confidence 0123589999999876522 2222332 36999999998643221111 1111101
Q ss_pred HHHHhhCCCceeeecCCCcCC
Q 024413 225 SILYKTRLPLVLAFNKTDVAQ 245 (268)
Q Consensus 225 ~~l~~~~~p~ilV~NK~Dl~~ 245 (268)
......++|+++|+||+|+..
T Consensus 127 ~~~~~~~~piilv~NK~Dl~~ 147 (199)
T 2p5s_A 127 EDAAHETVPIMLVGNKADIRD 147 (199)
T ss_dssp HHHC---CCEEEEEECGGGHH
T ss_pred HHhcCCCCCEEEEEECccccc
Confidence 111224789999999999963
No 185
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.33 E-value=6e-13 Score=111.25 Aligned_cols=71 Identities=17% Similarity=0.153 Sum_probs=42.5
Q ss_pred CCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHh--hCCCceeeecCCCc
Q 024413 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK--TRLPLVLAFNKTDV 243 (268)
Q Consensus 166 ~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~--~~~p~ilV~NK~Dl 243 (268)
..+.|+|+||+.++.... .. ....+|++++|+|.... ..+..........+.. .++|+++|+||+|+
T Consensus 73 ~~~~i~Dt~G~~~~~~~~------~~--~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 141 (207)
T 2fv8_A 73 VELALWDTAGQEDYDRLR------PL--SYPDTDVILMCFSVDSP---DSLENIPEKWVPEVKHFCPNVPIILVANKKDL 141 (207)
T ss_dssp EEEEEEECTTCTTCTTTG------GG--GCTTCCEEEEEEETTCH---HHHHHHHHTHHHHHHHHSTTCCEEEEEECGGG
T ss_pred EEEEEEECCCcHHHHHHH------Hh--hcCCCCEEEEEEECCCH---HHHHHHHHHHHHHHHHhCCCCCEEEEEEchhh
Confidence 368999999987653211 01 12447999999998542 1111100111122222 37899999999999
Q ss_pred CChh
Q 024413 244 AQHE 247 (268)
Q Consensus 244 ~~~~ 247 (268)
....
T Consensus 142 ~~~~ 145 (207)
T 2fv8_A 142 RSDE 145 (207)
T ss_dssp GGCH
T ss_pred hccc
Confidence 7653
No 186
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.33 E-value=2.2e-12 Score=107.08 Aligned_cols=26 Identities=19% Similarity=0.510 Sum_probs=23.1
Q ss_pred eEEEEEecCCCCHHHHHHHHHhcccC
Q 024413 70 VIIIVVGMAGSGKTTFMHRLVCHTQS 95 (268)
Q Consensus 70 ~~v~iiG~~GsGKSTLl~~l~g~~~~ 95 (268)
..++|+|++|||||||+++|+|....
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~~~ 31 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNEFN 31 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCC
Confidence 56899999999999999999997643
No 187
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.33 E-value=7.1e-13 Score=109.24 Aligned_cols=70 Identities=14% Similarity=0.123 Sum_probs=40.5
Q ss_pred CEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHH--hhCCCceeeecCCCcC
Q 024413 167 DYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY--KTRLPLVLAFNKTDVA 244 (268)
Q Consensus 167 ~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~--~~~~p~ilV~NK~Dl~ 244 (268)
.+.|+|+||+.++.. ....++ ..+|++++|+|........... ........+. ..+.|+++|+||+|+.
T Consensus 57 ~~~l~Dt~G~~~~~~------~~~~~~--~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~piilv~nK~Dl~ 127 (199)
T 2gf0_A 57 TLQITDTTGSHQFPA------MQRLSI--SKGHAFILVFSVTSKQSLEELG-PIYKLIVQIKGSVEDIPVMLVGNKCDET 127 (199)
T ss_dssp EEEEEECCGGGSCHH------HHHHHH--HHCSEEEEEEETTCHHHHHTTH-HHHHHHHHHHSCGGGSCEEEEEECTTCS
T ss_pred EEEEEeCCChHHhHH------HHHHhh--ccCCEEEEEEECcCHHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccCC
Confidence 689999999876521 222222 2369999999986421111100 0010011111 1368999999999997
Q ss_pred C
Q 024413 245 Q 245 (268)
Q Consensus 245 ~ 245 (268)
.
T Consensus 128 ~ 128 (199)
T 2gf0_A 128 Q 128 (199)
T ss_dssp S
T ss_pred c
Confidence 5
No 188
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.33 E-value=7.2e-12 Score=114.08 Aligned_cols=153 Identities=20% Similarity=0.196 Sum_probs=83.6
Q ss_pred cCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCc-----
Q 024413 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGI----- 141 (268)
Q Consensus 67 ~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----- 141 (268)
.+..+++|+|++|+|||||++.|++.....+..+.+.+.|+........ . ..+..+... ++..++...
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~-~--l~d~~~~~~----~~~~~~~~i~~~~~ 149 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGS-I--LGDKTRMAR----LAVHPNAYIRPSPT 149 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC-------------------CHH----HHTCTTEEEECCC-
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccch-h--ccchhhHHh----hccCCCeeEEECCC
Confidence 4567899999999999999999998876666667776665432211000 0 001111111 100111000
Q ss_pred ccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHH
Q 024413 142 LTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNML 221 (268)
Q Consensus 142 ~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~ 221 (268)
.+....++.-.+..+. ..-..+.+++|+||||+..... .+ ...+|++++|+|+...........
T Consensus 150 ~~~~~~~~~~t~d~i~--~~~~~~~~~iiiDTpGi~~~~~------~~-----~~~aD~vl~V~d~~~~~~~~~l~~--- 213 (355)
T 3p32_A 150 SGTLGGVTRATRETVV--LLEAAGFDVILIETVGVGQSEV------AV-----ANMVDTFVLLTLARTGDQLQGIKK--- 213 (355)
T ss_dssp -CCHHHHHHHHHHHHH--HHHHTTCCEEEEEECSCSSHHH------HH-----HTTCSEEEEEEESSTTCTTTTCCT---
T ss_pred CccccchhHHHHHHHH--HHhhCCCCEEEEeCCCCCcHHH------HH-----HHhCCEEEEEECCCCCccHHHHHH---
Confidence 0112223333333332 2223578999999999765311 11 156899999999865433221110
Q ss_pred HHHHHHHhhCCCceeeecCCCcCChhh
Q 024413 222 YACSILYKTRLPLVLAFNKTDVAQHEF 248 (268)
Q Consensus 222 ~~~~~l~~~~~p~ilV~NK~Dl~~~~~ 248 (268)
...++|+++|+||+|+.+...
T Consensus 214 ------~~~~~p~ivVlNK~Dl~~~~~ 234 (355)
T 3p32_A 214 ------GVLELADIVVVNKADGEHHKE 234 (355)
T ss_dssp ------TSGGGCSEEEEECCCGGGHHH
T ss_pred ------hHhhcCCEEEEECCCCcChhH
Confidence 013469999999999986543
No 189
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.33 E-value=4.2e-12 Score=104.30 Aligned_cols=118 Identities=23% Similarity=0.382 Sum_probs=68.0
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhccc-CcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccc
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQ-SRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTS 144 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~-~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 144 (268)
..+...++|+|++|+|||||++.|.+... .... ....... ... ..
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~----------~~t~~~~----~~~------------------~~-- 63 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNI----------LPTIGFS----IEK------------------FK-- 63 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSC----------CCCSSEE----EEE------------------EE--
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCc----------CCcccee----EEE------------------EE--
Confidence 44567899999999999999999998652 2110 0000000 000 00
Q ss_pred hhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHH
Q 024413 145 LNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC 224 (268)
Q Consensus 145 ~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~ 224 (268)
..+..+.|+|+||+.++... ...++ ..+|++++|+|+... ..+........
T Consensus 64 ------------------~~~~~~~l~Dt~G~~~~~~~------~~~~~--~~~d~ii~v~d~~~~---~s~~~~~~~~~ 114 (190)
T 2h57_A 64 ------------------SSSLSFTVFDMSGQGRYRNL------WEHYY--KEGQAIIFVIDSSDR---LRMVVAKEELD 114 (190)
T ss_dssp ------------------CSSCEEEEEEECCSTTTGGG------GGGGG--GGCSEEEEEEETTCH---HHHHHHHHHHH
T ss_pred ------------------ECCEEEEEEECCCCHHHHHH------HHHHH--hcCCEEEEEEECCCH---HHHHHHHHHHH
Confidence 12457999999998765221 11111 347999999999643 11111111111
Q ss_pred HHHHh-----hCCCceeeecCCCcCCh
Q 024413 225 SILYK-----TRLPLVLAFNKTDVAQH 246 (268)
Q Consensus 225 ~~l~~-----~~~p~ilV~NK~Dl~~~ 246 (268)
..+.. .+.|+++|+||+|+.+.
T Consensus 115 ~~~~~~~~~~~~~piilv~nK~Dl~~~ 141 (190)
T 2h57_A 115 TLLNHPDIKHRRIPILFFANKMDLRDA 141 (190)
T ss_dssp HHHHSTTTTTSCCCEEEEEECTTSTTC
T ss_pred HHHhChhhccCCCeEEEEEeCcCcccC
Confidence 22222 47899999999999764
No 190
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.32 E-value=1.7e-12 Score=107.48 Aligned_cols=27 Identities=19% Similarity=0.463 Sum_probs=24.3
Q ss_pred CeEEEEEecCCCCHHHHHHHHHhcccC
Q 024413 69 PVIIIVVGMAGSGKTTFMHRLVCHTQS 95 (268)
Q Consensus 69 g~~v~iiG~~GsGKSTLl~~l~g~~~~ 95 (268)
..+++|+|+||||||||++.|+|...+
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~ 55 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFN 55 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCC
Confidence 367899999999999999999998765
No 191
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.32 E-value=1.1e-11 Score=100.23 Aligned_cols=28 Identities=39% Similarity=0.638 Sum_probs=23.5
Q ss_pred CCeEEEEEecCCCCHHHHHHHHHhcccC
Q 024413 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQS 95 (268)
Q Consensus 68 ~g~~v~iiG~~GsGKSTLl~~l~g~~~~ 95 (268)
+...++|+|++|+|||||++.+.+....
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~ 34 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYS 34 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCC
Confidence 3457899999999999999999986543
No 192
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.32 E-value=1.3e-12 Score=107.61 Aligned_cols=68 Identities=19% Similarity=0.137 Sum_probs=39.0
Q ss_pred CCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHh------hCCCceeeec
Q 024413 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK------TRLPLVLAFN 239 (268)
Q Consensus 166 ~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~------~~~p~ilV~N 239 (268)
..+.|+|+||+..+.. . ..++ ..++++++|+|.... ..+.. ....+..+.. ...|+++|+|
T Consensus 69 ~~l~i~Dt~G~~~~~~---~----~~~~--~~~~~~ilv~d~~~~---~s~~~-~~~~~~~i~~~~~~~~~~~piilv~n 135 (187)
T 3c5c_A 69 VHLRVMDTADLDTPRN---C----ERYL--NWAHAFLVVYSVDSR---QSFDS-SSSYLELLALHAKETQRSIPALLLGN 135 (187)
T ss_dssp EEEEEEECCC---CCC---T----HHHH--TTCSEEEEEEETTCH---HHHHH-HHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_pred EEEEEEECCCCCcchh---H----HHHH--hhCCEEEEEEECCCH---HHHHH-HHHHHHHHHHHhhccCCCCCEEEEEE
Confidence 3678999999976532 1 2233 347899999998532 22111 1111122221 4789999999
Q ss_pred CCCcCCh
Q 024413 240 KTDVAQH 246 (268)
Q Consensus 240 K~Dl~~~ 246 (268)
|+|+...
T Consensus 136 K~Dl~~~ 142 (187)
T 3c5c_A 136 KLDMAQY 142 (187)
T ss_dssp CGGGGGG
T ss_pred Ccchhhc
Confidence 9999654
No 193
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.32 E-value=5.5e-12 Score=101.81 Aligned_cols=70 Identities=19% Similarity=0.137 Sum_probs=40.8
Q ss_pred CEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHh----hCCCceeeecCCC
Q 024413 167 DYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK----TRLPLVLAFNKTD 242 (268)
Q Consensus 167 ~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~----~~~p~ilV~NK~D 242 (268)
.+.|+|+||+.++.. ....+ ...+|++++++|.......... ............ .+.|+++|+||+|
T Consensus 57 ~~~i~Dt~G~~~~~~------~~~~~--~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~i~v~nK~D 127 (177)
T 1wms_A 57 TMQIWDTAGQERFRS------LRTPF--YRGSDCCLLTFSVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVILGNKID 127 (177)
T ss_dssp EEEEEECCCCGGGHH------HHGGG--GTTCSEEEEEEETTCHHHHHTH-HHHHHHHHHHHTCSCTTTSCEEEEEECTT
T ss_pred EEEEEeCCCchhhhh------hHHHH--HhcCCEEEEEEECcCHHHHHHH-HHHHHHHHHHccccccCCCcEEEEEECCc
Confidence 689999999866421 11111 2447999999998653221111 101110111112 5679999999999
Q ss_pred cCC
Q 024413 243 VAQ 245 (268)
Q Consensus 243 l~~ 245 (268)
+..
T Consensus 128 l~~ 130 (177)
T 1wms_A 128 ISE 130 (177)
T ss_dssp CSS
T ss_pred ccc
Confidence 963
No 194
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.32 E-value=2.7e-12 Score=106.96 Aligned_cols=71 Identities=21% Similarity=0.183 Sum_probs=41.2
Q ss_pred CCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeecCCCcCC
Q 024413 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQ 245 (268)
Q Consensus 166 ~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK~Dl~~ 245 (268)
..+.|+|+||+.++.. ....++ ..+|++++|+|+........ ....+...........|+++|+||+|+..
T Consensus 69 ~~~~l~Dt~G~~~~~~------~~~~~~--~~~d~ii~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 139 (213)
T 3cph_A 69 VKLQLWDTAGQERFRT------ITTAYY--RGAMGIILVYDVTDERTFTN-IKQWFKTVNEHANDEAQLLLVGNKSDMET 139 (213)
T ss_dssp EEEEEECCTTGGGGTC------CCHHHH--TTCSEEEEEEETTCHHHHHT-HHHHHHHHHHHTTTCSEEEEEEECTTCSS
T ss_pred EEEEEEeCCCcHHHHH------HHHHHh--ccCCEEEEEEECCCHHHHHH-HHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 3689999999876522 111222 35799999999864321111 11111101111123689999999999943
No 195
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.32 E-value=1.7e-11 Score=107.88 Aligned_cols=78 Identities=12% Similarity=0.074 Sum_probs=48.0
Q ss_pred CCCEEEEeCCCCcchh----hhh---hHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceee
Q 024413 165 HLDYVLVDTPGQIEIF----TWS---ASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLA 237 (268)
Q Consensus 165 ~~~illlDePG~~~~~----~~~---~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV 237 (268)
..++.|+||||+.... ... ........+++ ...+++++|+|+...+...+.. ..+..+...+.|+++|
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~il~v~d~~~~~~~~~~~----~~~~~~~~~~~~~i~V 198 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT-KENCLILAVSPANSDLANSDAL----KIAKEVDPQGQRTIGV 198 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHT-STTEEEEEEEESSSCGGGCHHH----HHHHHHCTTCSSEEEE
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHc-CCCeEEEEEecCCcchhhhHHH----HHHHHhCCCCCeEEEE
Confidence 3689999999986521 111 22233333343 3345666899997765544421 1124444567899999
Q ss_pred ecCCCcCChh
Q 024413 238 FNKTDVAQHE 247 (268)
Q Consensus 238 ~NK~Dl~~~~ 247 (268)
+||+|+.+++
T Consensus 199 ~NK~Dl~~~~ 208 (299)
T 2aka_B 199 ITKLDLMDEG 208 (299)
T ss_dssp EECGGGSCTT
T ss_pred EEccccCCCC
Confidence 9999998654
No 196
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.32 E-value=1.7e-12 Score=121.95 Aligned_cols=126 Identities=17% Similarity=0.192 Sum_probs=74.5
Q ss_pred cCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccchh
Q 024413 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (268)
Q Consensus 67 ~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 146 (268)
.....++++|.+|+|||||+|.|.+...... ...+... .+. ......
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~------------~~~~gtt----~~~--------------~~~~~~--- 239 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIV------------SNVAGTT----RDA--------------VDTSFT--- 239 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEE------------CC----------CT--------------TSEEEE---
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCcccc------------CCCCCeE----EEE--------------EEEEEE---
Confidence 4567899999999999999999997643210 1111110 000 000000
Q ss_pred hhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhh--hhHHHHHHHHH-hccCCcEEEEEEcCCCcCCchhhHHHHHHH
Q 024413 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTW--SASGAIITEAF-ASTFPTVVTYVVDTPRSANPMTFMSNMLYA 223 (268)
Q Consensus 147 ~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~--~~~~~~i~~~~-~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~ 223 (268)
..+.++.||||||+.+.... ..........+ ....+|++++|+|+...+...+.. .
T Consensus 240 ----------------~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~-----~ 298 (456)
T 4dcu_A 240 ----------------YNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKR-----I 298 (456)
T ss_dssp ----------------ETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHH-----H
T ss_pred ----------------ECCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHH-----H
Confidence 12347899999997543110 01111112221 224479999999998877655422 1
Q ss_pred HHHHHhhCCCceeeecCCCcCCh
Q 024413 224 CSILYKTRLPLVLAFNKTDVAQH 246 (268)
Q Consensus 224 ~~~l~~~~~p~ilV~NK~Dl~~~ 246 (268)
...+...++|+++|+||+|+.+.
T Consensus 299 ~~~~~~~~~~~ilv~NK~Dl~~~ 321 (456)
T 4dcu_A 299 AGYAHEAGKAVVIVVNKWDAVDK 321 (456)
T ss_dssp HHHHHHTTCEEEEEEECGGGSCC
T ss_pred HHHHHHcCCCEEEEEEChhcCCC
Confidence 34455678999999999999864
No 197
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.32 E-value=6.2e-13 Score=110.68 Aligned_cols=69 Identities=17% Similarity=0.125 Sum_probs=41.8
Q ss_pred CEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHh--hCCCceeeecCCCcC
Q 024413 167 DYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK--TRLPLVLAFNKTDVA 244 (268)
Q Consensus 167 ~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~--~~~p~ilV~NK~Dl~ 244 (268)
.+.|+|+||+.++..... . ....+|++++|+|.... ..+..........+.. .+.|+++|+||+|+.
T Consensus 74 ~l~i~Dt~G~~~~~~~~~------~--~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 142 (201)
T 2gco_A 74 ELALWDTAGQEDYDRLRP------L--SYPDTDVILMCFSIDSP---DSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 142 (201)
T ss_dssp EEEEECCCCSGGGTTTGG------G--GCTTCSEEEEEEETTCH---HHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGT
T ss_pred EEEEEECCCchhHHHHHH------H--hcCCCCEEEEEEECCCH---HHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhh
Confidence 689999999876522110 1 12457999999998542 1111110111122222 278999999999998
Q ss_pred Ch
Q 024413 245 QH 246 (268)
Q Consensus 245 ~~ 246 (268)
..
T Consensus 143 ~~ 144 (201)
T 2gco_A 143 QD 144 (201)
T ss_dssp TC
T ss_pred cC
Confidence 65
No 198
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.31 E-value=1.2e-12 Score=122.29 Aligned_cols=126 Identities=16% Similarity=0.203 Sum_probs=74.1
Q ss_pred CCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccchhh
Q 024413 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (268)
Q Consensus 68 ~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 147 (268)
....++|+|.+|+|||||+|.|+|...... ...+..+ ++. . .....
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~------------~~~~gtT----~d~---------~----~~~~~----- 219 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIV------------SNVAGTT----RDA---------V----DTSFT----- 219 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEE------------C----------------------C----CEEEE-----
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceee------------cCCCCce----eee---------e----EEEEE-----
Confidence 346899999999999999999998654211 1111110 000 0 00000
Q ss_pred hcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhh--hhHHHHHHHHH-hccCCcEEEEEEcCCCcCCchhhHHHHHHHH
Q 024413 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTW--SASGAIITEAF-ASTFPTVVTYVVDTPRSANPMTFMSNMLYAC 224 (268)
Q Consensus 148 lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~--~~~~~~i~~~~-~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~ 224 (268)
..+.++.|+||||+.+.... ..........+ ....+|++++|+|+.......+.. ..
T Consensus 220 ---------------~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~-----~~ 279 (436)
T 2hjg_A 220 ---------------YNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKR-----IA 279 (436)
T ss_dssp ---------------ETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHH-----HH
T ss_pred ---------------ECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHH-----HH
Confidence 11346899999999654221 01111111111 123479999999998876655421 12
Q ss_pred HHHHhhCCCceeeecCCCcCChh
Q 024413 225 SILYKTRLPLVLAFNKTDVAQHE 247 (268)
Q Consensus 225 ~~l~~~~~p~ilV~NK~Dl~~~~ 247 (268)
..+...++|+++|+||+|+.+.+
T Consensus 280 ~~~~~~~~~iiiv~NK~Dl~~~~ 302 (436)
T 2hjg_A 280 GYAHEAGKAVVIVVNKWDAVDKD 302 (436)
T ss_dssp HHHHHTTCEEEEEEECGGGSCCC
T ss_pred HHHHHcCCcEEEEEECccCCCcc
Confidence 44455689999999999998654
No 199
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.31 E-value=1e-11 Score=110.33 Aligned_cols=78 Identities=10% Similarity=0.062 Sum_probs=46.9
Q ss_pred CCCEEEEeCCCCcchhh-------hhhHHHHHHHHHhccCCcEEEEEEcC-CCcCCchhhHHHHHHHHHHHHhhCCCcee
Q 024413 165 HLDYVLVDTPGQIEIFT-------WSASGAIITEAFASTFPTVVTYVVDT-PRSANPMTFMSNMLYACSILYKTRLPLVL 236 (268)
Q Consensus 165 ~~~illlDePG~~~~~~-------~~~~~~~i~~~~~~~~~d~vv~vvD~-~~~~~~~~~~~~~~~~~~~l~~~~~p~il 236 (268)
..++.|+||||+.+... ..........++ ..+|++++++|+ ...+...+.. .....+...+.|+++
T Consensus 130 ~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~iilvvd~~~~~~~~~~~~----~i~~~~~~~~~~~i~ 203 (315)
T 1jwy_B 130 VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYI--KKQNAIIVAVTPANTDLANSDAL----QLAKEVDPEGKRTIG 203 (315)
T ss_dssp SCSEEEEECCCCC---------CSHHHHHHHHHHHH--HSTTEEEEEEEESSSCSTTCSHH----HHHHHHCSSCSSEEE
T ss_pred CCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHH--cCCCeEEEEEEecCcchhhhHHH----HHHHHhCCCCCcEEE
Confidence 46899999999975211 011222222333 357999999986 4444433311 113445556899999
Q ss_pred eecCCCcCChhh
Q 024413 237 AFNKTDVAQHEF 248 (268)
Q Consensus 237 V~NK~Dl~~~~~ 248 (268)
|+||+|+..++.
T Consensus 204 v~NK~Dl~~~~~ 215 (315)
T 1jwy_B 204 VITKLDLMDKGT 215 (315)
T ss_dssp EEECTTSSCSSC
T ss_pred EEcCcccCCcch
Confidence 999999986543
No 200
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.31 E-value=4.1e-12 Score=104.18 Aligned_cols=68 Identities=21% Similarity=0.123 Sum_probs=42.0
Q ss_pred CCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHh----hCCCceeeecCC
Q 024413 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK----TRLPLVLAFNKT 241 (268)
Q Consensus 166 ~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~----~~~p~ilV~NK~ 241 (268)
..+.|+|+||+.++.. ....++ ..+|++++|+|+........ .......+.. ..+|+++|+||+
T Consensus 64 ~~~~i~Dt~G~~~~~~------~~~~~~--~~~d~ii~v~d~~~~~s~~~----~~~~~~~i~~~~~~~~~p~ilv~nK~ 131 (195)
T 1x3s_A 64 AKLAIWDTAGQERFRT------LTPSYY--RGAQGVILVYDVTRRDTFVK----LDNWLNELETYCTRNDIVNMLVGNKI 131 (195)
T ss_dssp EEEEEEEECSSGGGCC------SHHHHH--TTCCEEEEEEETTCHHHHHT----HHHHHHHHTTCCSCSCCEEEEEEECT
T ss_pred EEEEEEeCCCchhhhh------hhHHHh--ccCCEEEEEEECcCHHHHHH----HHHHHHHHHHhcCcCCCcEEEEEECC
Confidence 4689999999876532 122223 34799999999964321111 1111223322 368999999999
Q ss_pred CcCC
Q 024413 242 DVAQ 245 (268)
Q Consensus 242 Dl~~ 245 (268)
|+..
T Consensus 132 Dl~~ 135 (195)
T 1x3s_A 132 DKEN 135 (195)
T ss_dssp TSSS
T ss_pred cCcc
Confidence 9954
No 201
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.31 E-value=4.9e-12 Score=110.94 Aligned_cols=78 Identities=15% Similarity=0.168 Sum_probs=46.0
Q ss_pred CEEEEeCCCCcchhhhhhHHHHH--------HHHHhc-----------cCCcEEEEEEcC-CCcCCchhhHHHHHHHHHH
Q 024413 167 DYVLVDTPGQIEIFTWSASGAII--------TEAFAS-----------TFPTVVTYVVDT-PRSANPMTFMSNMLYACSI 226 (268)
Q Consensus 167 ~illlDePG~~~~~~~~~~~~~i--------~~~~~~-----------~~~d~vv~vvD~-~~~~~~~~~~~~~~~~~~~ 226 (268)
.+.|+||||+.+..........+ ..++.. ..+|+++++++. ..++...+.. .+..
T Consensus 66 ~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~-----~l~~ 140 (274)
T 3t5d_A 66 LLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIE-----FMKR 140 (274)
T ss_dssp EEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHH-----HHHH
T ss_pred EEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHH-----HHHH
Confidence 68999999996542211111111 222221 125677777754 4455555422 1344
Q ss_pred HHhhCCCceeeecCCCcCChhhhh
Q 024413 227 LYKTRLPLVLAFNKTDVAQHEFAL 250 (268)
Q Consensus 227 l~~~~~p~ilV~NK~Dl~~~~~~~ 250 (268)
+.. .+|+|+|+||+|+.++++..
T Consensus 141 l~~-~~pvi~V~nK~D~~~~~e~~ 163 (274)
T 3t5d_A 141 LHE-KVNIIPLIAKADTLTPEECQ 163 (274)
T ss_dssp HTT-TSCEEEEESSGGGSCHHHHH
T ss_pred Hhc-cCCEEEEEeccCCCCHHHHH
Confidence 444 89999999999998776554
No 202
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.31 E-value=4.3e-12 Score=115.58 Aligned_cols=127 Identities=19% Similarity=0.315 Sum_probs=72.4
Q ss_pred cCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCccccc-ccchhhHHHHHHHHHHcCCCCCCCcccch
Q 024413 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAA-NIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (268)
Q Consensus 67 ~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 145 (268)
.....++|+|++|+|||||+|.|+|.... +.+ .++.+ ..... ...
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~------~~~-------~~~~t~~~~~~------------------~~~--- 210 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPE------IAS-------YPFTTRGINVG------------------QFE--- 210 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCE------EEC-------CTTCSSCEEEE------------------EEE---
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc------cCC-------CCCeeeceeEE------------------EEE---
Confidence 45678999999999999999999986521 111 11110 00000 000
Q ss_pred hhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhh--HHHHHHHHHhccCCcEEEEEEcCCCcC--CchhhHHHHH
Q 024413 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSA--SGAIITEAFASTFPTVVTYVVDTPRSA--NPMTFMSNML 221 (268)
Q Consensus 146 ~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~--~~~~i~~~~~~~~~d~vv~vvD~~~~~--~~~~~~~~~~ 221 (268)
..+..+.++||||+.++..... ........ ....+|.+++|+|+.... +...... .
T Consensus 211 -----------------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~-~~~~ad~illV~D~s~~~~~~~~~~~~-~- 270 (357)
T 2e87_A 211 -----------------DGYFRYQIIDTPGLLDRPISERNEIEKQAILA-LRYLGNLIIYIFDPSEHCGFPLEEQIH-L- 270 (357)
T ss_dssp -----------------ETTEEEEEEECTTTSSSCSTTSCHHHHHHHHG-GGGTCSEEEEEECTTCTTSSCHHHHHH-H-
T ss_pred -----------------ecCceEEEEeCCCccccchhhhhHHHHHHHHH-HHhcCCEEEEEEeCCccccCCHHHHHH-H-
Confidence 0134689999999976522111 11111111 123589999999976533 2222111 1
Q ss_pred HHHHHHHh-h-CCCceeeecCCCcCChhhh
Q 024413 222 YACSILYK-T-RLPLVLAFNKTDVAQHEFA 249 (268)
Q Consensus 222 ~~~~~l~~-~-~~p~ilV~NK~Dl~~~~~~ 249 (268)
...+.. . ++|+++|+||+|+....+.
T Consensus 271 --~~~i~~~~~~~piilV~NK~Dl~~~~~~ 298 (357)
T 2e87_A 271 --FEEVHGEFKDLPFLVVINKIDVADEENI 298 (357)
T ss_dssp --HHHHHHHTTTSCEEEEECCTTTCCHHHH
T ss_pred --HHHHHHhcCCCCEEEEEECcccCChHHH
Confidence 122221 2 7999999999999876554
No 203
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.31 E-value=1.6e-12 Score=118.87 Aligned_cols=79 Identities=13% Similarity=0.177 Sum_probs=40.0
Q ss_pred CEEEEeCCCCcchhhh----hhHHH----HHHHHHhcc-----------CCcEEEEEEcC-CCcCCchhhHHHHHHHHHH
Q 024413 167 DYVLVDTPGQIEIFTW----SASGA----IITEAFAST-----------FPTVVTYVVDT-PRSANPMTFMSNMLYACSI 226 (268)
Q Consensus 167 ~illlDePG~~~~~~~----~~~~~----~i~~~~~~~-----------~~d~vv~vvD~-~~~~~~~~~~~~~~~~~~~ 226 (268)
.+.++||||+.+.... ..... ....+++.. ..++++|+++. ..++...+.. . ...
T Consensus 96 ~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~--~---~~~ 170 (361)
T 2qag_A 96 RLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVA--F---MKA 170 (361)
T ss_dssp EEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHH--H---HHH
T ss_pred ceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHH--H---HHH
Confidence 6899999999554211 11111 111333221 23578888876 5556655421 1 122
Q ss_pred HHhhCCCceeeecCCCcCChhhhhh
Q 024413 227 LYKTRLPLVLAFNKTDVAQHEFALE 251 (268)
Q Consensus 227 l~~~~~p~ilV~NK~Dl~~~~~~~~ 251 (268)
+ ...+|+|+|+||+|+...+++..
T Consensus 171 l-~~~~piIlV~NK~Dl~~~~ev~~ 194 (361)
T 2qag_A 171 I-HNKVNIVPVIAKADTLTLKERER 194 (361)
T ss_dssp T-CS-SCEEEEEECCSSSCHHHHHH
T ss_pred h-ccCCCEEEEEECCCCCCHHHHHH
Confidence 2 35789999999999998776554
No 204
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.31 E-value=3.6e-12 Score=104.51 Aligned_cols=74 Identities=15% Similarity=0.110 Sum_probs=42.1
Q ss_pred CCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHH--hhCCCceeeecCCC
Q 024413 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY--KTRLPLVLAFNKTD 242 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~--~~~~p~ilV~NK~D 242 (268)
...+.|||+||+.++.. . ...+++ .++++++|+|...... .+. .+......+. ..+.|+++|+||+|
T Consensus 55 ~~~~~i~Dt~G~~~~~~--~----~~~~~~--~~~~~i~v~d~~~~~~--s~~-~~~~~~~~~~~~~~~~piilv~nK~D 123 (184)
T 2zej_A 55 DLVLNVWDFAGREEFYS--T----HPHFMT--QRALYLAVYDLSKGQA--EVD-AMKPWLFNIKARASSSPVILVGTHLD 123 (184)
T ss_dssp -CEEEEEEECSHHHHHT--T----SHHHHH--HSEEEEEEEEGGGCHH--HHH-THHHHHHHHHHHCTTCEEEEEEECGG
T ss_pred ceEEEEEecCCCHHHHH--h----hHHHcc--CCcEEEEEEeCCcchh--HHH-HHHHHHHHHHhhCCCCcEEEEEECCC
Confidence 34689999999876532 1 112222 2688888888754311 111 0111111121 13689999999999
Q ss_pred cCChhhh
Q 024413 243 VAQHEFA 249 (268)
Q Consensus 243 l~~~~~~ 249 (268)
+.+....
T Consensus 124 l~~~~~~ 130 (184)
T 2zej_A 124 VSDEKQR 130 (184)
T ss_dssp GCCHHHH
T ss_pred cccchhh
Confidence 9876543
No 205
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.31 E-value=3.7e-12 Score=110.43 Aligned_cols=76 Identities=14% Similarity=0.180 Sum_probs=45.5
Q ss_pred CCCEEEEeCCCCcchhhhhhH-HHHHHHHH--hccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhh-----CCCcee
Q 024413 165 HLDYVLVDTPGQIEIFTWSAS-GAIITEAF--ASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKT-----RLPLVL 236 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~~~-~~~i~~~~--~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~-----~~p~il 236 (268)
+.++.|+||||+.++...... ...+.+.+ ....+|++++|+|+.. +...+... +..+... ..|.++
T Consensus 70 ~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~-----~~~l~~~~~~~~~~~~i~ 143 (260)
T 2xtp_A 70 NREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR-YTSQDQQA-----AQRVKEIFGEDAMGHTIV 143 (260)
T ss_dssp TEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC-CCHHHHHH-----HHHHHHHHCGGGGGGEEE
T ss_pred CCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC-CCHHHHHH-----HHHHHHHhCchhhccEEE
Confidence 457999999999876332111 11222222 1245899999999975 44433211 2233322 568888
Q ss_pred eec-CCCcCCh
Q 024413 237 AFN-KTDVAQH 246 (268)
Q Consensus 237 V~N-K~Dl~~~ 246 (268)
|+| |+|+...
T Consensus 144 vv~nK~Dl~~~ 154 (260)
T 2xtp_A 144 LFTHKEDLNGG 154 (260)
T ss_dssp EEECGGGGTTC
T ss_pred EEEcccccCCc
Confidence 887 9999854
No 206
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.30 E-value=8.9e-13 Score=109.73 Aligned_cols=73 Identities=16% Similarity=0.182 Sum_probs=42.2
Q ss_pred CCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeecCCCcCC
Q 024413 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQ 245 (268)
Q Consensus 166 ~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK~Dl~~ 245 (268)
..+.|+|+||+.++.. ....++ ..+|++++|+|......... ....+.........+.|+++|+||+|+..
T Consensus 74 ~~l~l~Dt~G~~~~~~------~~~~~~--~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 144 (200)
T 2o52_A 74 VKLQIWDTAGQERFRS------VTRSYY--RGAAGALLVYDITSRETYNS-LAAWLTDARTLASPNIVVILCGNKKDLDP 144 (200)
T ss_dssp EEEEEECCTTHHHHSC------CCHHHH--TTCSEEEEEEETTCHHHHHT-HHHHHHHHHHHTCTTCEEEEEEECGGGGG
T ss_pred eEEEEEcCCCcHhHHH------HHHHHh--ccCCEEEEEEECcCHHHHHH-HHHHHHHHHHhcCCCCcEEEEEECCCccc
Confidence 3689999999865422 111222 34799999999864321111 11111001111224789999999999975
Q ss_pred hh
Q 024413 246 HE 247 (268)
Q Consensus 246 ~~ 247 (268)
.+
T Consensus 145 ~~ 146 (200)
T 2o52_A 145 ER 146 (200)
T ss_dssp GC
T ss_pred cc
Confidence 43
No 207
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.30 E-value=3.8e-12 Score=110.92 Aligned_cols=80 Identities=14% Similarity=0.166 Sum_probs=44.3
Q ss_pred CCCEEEEeCCCCcchhhhhhH-HHHHHHHHhccCCcEEEEEEcCCC-cCCchhhHHHHHHHHHHHHh--hCCCceeeecC
Q 024413 165 HLDYVLVDTPGQIEIFTWSAS-GAIITEAFASTFPTVVTYVVDTPR-SANPMTFMSNMLYACSILYK--TRLPLVLAFNK 240 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~~~-~~~i~~~~~~~~~d~vv~vvD~~~-~~~~~~~~~~~~~~~~~l~~--~~~p~ilV~NK 240 (268)
+..+.|+||||+.++...... ...+.+.+....++++++|+|... .+...+. .....+..... ...|+++|+||
T Consensus 83 ~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~nK 160 (262)
T 3def_A 83 GFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDK--QVVIAITQTFGKEIWCKTLLVLTH 160 (262)
T ss_dssp TEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHH--HHHHHHHHHHCGGGGGGEEEEEEC
T ss_pred CeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHH--HHHHHHHHHhchhhhcCEEEEEeC
Confidence 447899999999876432222 222333333345799999976543 2333221 11111111111 12489999999
Q ss_pred CCcCCh
Q 024413 241 TDVAQH 246 (268)
Q Consensus 241 ~Dl~~~ 246 (268)
+|+..+
T Consensus 161 ~Dl~~~ 166 (262)
T 3def_A 161 AQFSPP 166 (262)
T ss_dssp TTCCCS
T ss_pred cccCCC
Confidence 999643
No 208
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.30 E-value=2.8e-12 Score=108.11 Aligned_cols=69 Identities=19% Similarity=0.065 Sum_probs=41.8
Q ss_pred CCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHh--hCCCceeeecCCCc
Q 024413 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK--TRLPLVLAFNKTDV 243 (268)
Q Consensus 166 ~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~--~~~p~ilV~NK~Dl 243 (268)
..+.|||+||+.++... ...+ ...+|++++|+|.... ..+..........+.. .+.|+++|+||+|+
T Consensus 75 ~~l~i~Dt~G~~~~~~~------~~~~--~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl 143 (214)
T 3q3j_B 75 VELSLWDTSGSPYYDNV------RPLC--YSDSDAVLLCFDISRP---ETVDSALKKWRTEILDYCPSTRVLLIGCKTDL 143 (214)
T ss_dssp EEEEEEEECCSGGGTTT------GGGG--CTTCSEEEEEEETTCT---HHHHHHHTHHHHHHHHHCTTSEEEEEEECGGG
T ss_pred EEEEEEECCCCHhHHHH------HHHH--cCCCeEEEEEEECcCH---HHHHHHHHHHHHHHHHhCCCCCEEEEEEChhh
Confidence 36899999999765221 1111 1347999999999643 2221101111122322 37899999999999
Q ss_pred CC
Q 024413 244 AQ 245 (268)
Q Consensus 244 ~~ 245 (268)
.+
T Consensus 144 ~~ 145 (214)
T 3q3j_B 144 RT 145 (214)
T ss_dssp GG
T ss_pred cc
Confidence 65
No 209
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.30 E-value=2e-12 Score=105.26 Aligned_cols=69 Identities=20% Similarity=0.146 Sum_probs=34.5
Q ss_pred CCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHh---hCCCceeeecCCC
Q 024413 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK---TRLPLVLAFNKTD 242 (268)
Q Consensus 166 ~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~---~~~p~ilV~NK~D 242 (268)
..+.|+|+||+.++.. ....+ ...+|++++|+|+... ..+.. .......+.. .+.|+++|+||+|
T Consensus 57 ~~~~l~Dt~G~~~~~~------~~~~~--~~~~d~~i~v~d~~~~---~s~~~-~~~~~~~i~~~~~~~~piilv~nK~D 124 (183)
T 2fu5_C 57 IKLQIWDTAGQERFRT------ITTAY--YRGAMGIMLVYDITNE---KSFDN-IRNWIRNIEEHASADVEKMILGNKCD 124 (183)
T ss_dssp EEEEEEEC---------------CCTT--TTTCSEEEEEEETTCH---HHHHH-HHHHHHHHHHHSCTTCEEEEEEEC--
T ss_pred EEEEEEcCCCChhhhh------hHHHH--HhcCCEEEEEEECcCH---HHHHH-HHHHHHHHHHhcCCCCCEEEEEECcc
Confidence 4689999999865421 11011 1347999999999653 22111 1111122222 3689999999999
Q ss_pred cCCh
Q 024413 243 VAQH 246 (268)
Q Consensus 243 l~~~ 246 (268)
+...
T Consensus 125 l~~~ 128 (183)
T 2fu5_C 125 VNDK 128 (183)
T ss_dssp CCSC
T ss_pred CCcc
Confidence 9754
No 210
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.30 E-value=4.8e-13 Score=108.80 Aligned_cols=69 Identities=16% Similarity=0.047 Sum_probs=41.4
Q ss_pred CEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHh--hCCCceeeecCCCcC
Q 024413 167 DYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK--TRLPLVLAFNKTDVA 244 (268)
Q Consensus 167 ~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~--~~~p~ilV~NK~Dl~ 244 (268)
.+.|+|+||+.++... ... ....+|++++|+|........... ......+.. .+.|+++|+||+|+.
T Consensus 54 ~~~i~Dt~G~~~~~~~------~~~--~~~~~d~~i~v~d~~~~~s~~~~~---~~~~~~~~~~~~~~piilv~nK~Dl~ 122 (186)
T 1mh1_A 54 NLGLWDTAGQEDYDRL------RPL--SYPQTDVSLICFSLVSPASFENVR---AKWYPEVRHHCPNTPIILVGTKLDLR 122 (186)
T ss_dssp EEEEECCCCSGGGTTT------GGG--GCTTCSEEEEEEETTCHHHHHHHH---HTHHHHHHHHSTTSCEEEEEECHHHH
T ss_pred EEEEEECCCCHhHHHH------HHH--hccCCcEEEEEEECCChhhHHHHH---HHHHHHHHHhCCCCCEEEEeEccccc
Confidence 5779999999765221 001 124579999999996432111110 011122222 278999999999997
Q ss_pred Ch
Q 024413 245 QH 246 (268)
Q Consensus 245 ~~ 246 (268)
..
T Consensus 123 ~~ 124 (186)
T 1mh1_A 123 DD 124 (186)
T ss_dssp TC
T ss_pred cc
Confidence 64
No 211
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.29 E-value=5.1e-12 Score=110.55 Aligned_cols=78 Identities=15% Similarity=0.154 Sum_probs=44.7
Q ss_pred CCCEEEEeCCCCcchhhhh-hHHHHHHHHHhccCCcEEEEEEcCCC-cCCchhhHHHHHHHHHHHHh---h--CCCceee
Q 024413 165 HLDYVLVDTPGQIEIFTWS-ASGAIITEAFASTFPTVVTYVVDTPR-SANPMTFMSNMLYACSILYK---T--RLPLVLA 237 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~-~~~~~i~~~~~~~~~d~vv~vvD~~~-~~~~~~~~~~~~~~~~~l~~---~--~~p~ilV 237 (268)
+.++.|+||||+.++.... .....+..++....+|++++|+|... .+...+. .. ...+.. . ..|+++|
T Consensus 86 ~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~--~~---~~~l~~~~~~~~~~~iivV 160 (270)
T 1h65_A 86 GFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDK--LV---AKAITDSFGKGIWNKAIVA 160 (270)
T ss_dssp TEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHH--HH---HHHHHHHHCGGGGGGEEEE
T ss_pred CeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHH--HH---HHHHHHHhCcccccCEEEE
Confidence 3469999999997753211 12222333333335799999976643 2333221 11 122221 1 2699999
Q ss_pred ecCCCcCChh
Q 024413 238 FNKTDVAQHE 247 (268)
Q Consensus 238 ~NK~Dl~~~~ 247 (268)
+||+|+..++
T Consensus 161 ~nK~Dl~~~~ 170 (270)
T 1h65_A 161 LTHAQFSPPD 170 (270)
T ss_dssp EECCSCCCGG
T ss_pred EECcccCCcC
Confidence 9999997654
No 212
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=98.96 E-value=2.4e-13 Score=113.21 Aligned_cols=69 Identities=16% Similarity=0.138 Sum_probs=40.8
Q ss_pred CEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhh--CCCceeeecCCCcC
Q 024413 167 DYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKT--RLPLVLAFNKTDVA 244 (268)
Q Consensus 167 ~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~--~~p~ilV~NK~Dl~ 244 (268)
.+.|+|+||+.++.. ....++ ..+|++++|+|+............. ...+... ++|+++|+||+|+.
T Consensus 79 ~l~i~Dt~G~~~~~~------~~~~~~--~~~d~iilv~D~~~~~s~~~~~~~~---~~~l~~~~~~~piilv~NK~Dl~ 147 (204)
T 3th5_A 79 NLGLWDTAGQEDYDR------LRPLSY--PQTDVFLICFSLVSPASFENVRAKW---YPEVRHHCPNTPIILVGTKLDLR 147 (204)
Confidence 567999999866421 111122 3469999999985432222111000 1222222 78999999999997
Q ss_pred Ch
Q 024413 245 QH 246 (268)
Q Consensus 245 ~~ 246 (268)
+.
T Consensus 148 ~~ 149 (204)
T 3th5_A 148 DD 149 (204)
Confidence 64
No 213
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.29 E-value=1.1e-12 Score=110.47 Aligned_cols=70 Identities=16% Similarity=0.175 Sum_probs=35.7
Q ss_pred CEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHh--hCCCceeeecCCCcC
Q 024413 167 DYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK--TRLPLVLAFNKTDVA 244 (268)
Q Consensus 167 ~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~--~~~p~ilV~NK~Dl~ 244 (268)
.+.|+|+||+.++.. ....++ ..+|++++|+|.... ..+..........+.. ..+|+++|+||+|+.
T Consensus 83 ~l~l~Dt~G~~~~~~------~~~~~~--~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 151 (214)
T 2j1l_A 83 HLHIWDTAGQDDYDR------LRPLFY--PDASVLLLCFDVTSP---NSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLR 151 (214)
T ss_dssp EEEEEEC-----------------------CEEEEEEEEETTCH---HHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGG
T ss_pred EEEEEECCCchhhhH------HHHHHh--ccCCEEEEEEECcCH---HHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhh
Confidence 689999999876521 111122 347999999998642 2221110011122222 378999999999998
Q ss_pred Chh
Q 024413 245 QHE 247 (268)
Q Consensus 245 ~~~ 247 (268)
...
T Consensus 152 ~~~ 154 (214)
T 2j1l_A 152 KDK 154 (214)
T ss_dssp SCH
T ss_pred ccc
Confidence 754
No 214
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.29 E-value=1.4e-12 Score=107.50 Aligned_cols=70 Identities=16% Similarity=0.094 Sum_probs=42.1
Q ss_pred CCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHh--hCCCceeeecCCCc
Q 024413 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK--TRLPLVLAFNKTDV 243 (268)
Q Consensus 166 ~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~--~~~p~ilV~NK~Dl 243 (268)
..+.|+|+||+.++... ...+ ...+|++++|+|.... ..+..........+.. .+.|+++|+||+|+
T Consensus 66 ~~~~i~D~~G~~~~~~~------~~~~--~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 134 (194)
T 2atx_A 66 YLLGLYDTAGQEDYDRL------RPLS--YPMTDVFLICFSVVNP---ASFQNVKEEWVPELKEYAPNVPFLLIGTQIDL 134 (194)
T ss_dssp EEEEEECCCCSSSSTTT------GGGG--CTTCSEEEEEEETTCH---HHHHHHHHTHHHHHHHHSTTCCEEEEEECTTS
T ss_pred EEEEEEECCCCcchhHH------HHHh--cCCCCEEEEEEECCCH---HHHHHHHHHHHHHHHHhCCCCCEEEEEEChhh
Confidence 36889999999765221 1111 2347999999998543 2111110011122322 27899999999999
Q ss_pred CCh
Q 024413 244 AQH 246 (268)
Q Consensus 244 ~~~ 246 (268)
...
T Consensus 135 ~~~ 137 (194)
T 2atx_A 135 RDD 137 (194)
T ss_dssp TTC
T ss_pred ccc
Confidence 764
No 215
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.29 E-value=9.6e-13 Score=110.05 Aligned_cols=70 Identities=16% Similarity=0.145 Sum_probs=42.2
Q ss_pred CEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHh--hCCCceeeecCCCcC
Q 024413 167 DYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK--TRLPLVLAFNKTDVA 244 (268)
Q Consensus 167 ~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~--~~~p~ilV~NK~Dl~ 244 (268)
.+.|||+||+.++.. ....+ ...+|++++|+|.... ..+..........+.. .+.|+++|+||+|+.
T Consensus 58 ~~~i~Dt~G~~~~~~------~~~~~--~~~~d~~ilv~d~~~~---~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 126 (212)
T 2j0v_A 58 NLGLWDTAGQEDYSR------LRPLS--YRGADIFVLAFSLISK---ASYENVLKKWMPELRRFAPNVPIVLVGTKLDLR 126 (212)
T ss_dssp EEEEECCCCCCCCCC--------CGG--GTTCSEEEEEEETTCH---HHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHH
T ss_pred EEEEEECCCcHHHHH------HHHhh--ccCCCEEEEEEECCCH---HHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhh
Confidence 689999999976532 11111 2447999999998542 2211110011122322 278999999999997
Q ss_pred Chh
Q 024413 245 QHE 247 (268)
Q Consensus 245 ~~~ 247 (268)
...
T Consensus 127 ~~~ 129 (212)
T 2j0v_A 127 DDK 129 (212)
T ss_dssp TCH
T ss_pred hCc
Confidence 643
No 216
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.29 E-value=1.9e-11 Score=102.23 Aligned_cols=121 Identities=22% Similarity=0.363 Sum_probs=67.2
Q ss_pred CCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccchhh
Q 024413 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (268)
Q Consensus 68 ~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 147 (268)
+...++|+|++|+|||||++.+.+...+..+. +....... +.+..
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~-------------~~~~~~~~------------~~~~~---------- 50 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQT-------------SITDSSAI------------YKVNN---------- 50 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCCCBCC-------------CCSCEEEE------------EECSS----------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccC-------------CcceeeEE------------EEecC----------
Confidence 34678999999999999999999865432110 00000000 00000
Q ss_pred hcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHH
Q 024413 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (268)
Q Consensus 148 lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l 227 (268)
..+..+.|||+||+.++.. .+...+ ...++++++|+|+.............. ...+
T Consensus 51 ---------------~~~~~~~i~Dt~G~~~~~~------~~~~~~-~~~~~~~i~v~d~~~~~~~~~~~~~~~--~~~~ 106 (214)
T 2fh5_B 51 ---------------NRGNSLTLIDLPGHESLRF------QLLDRF-KSSARAVVFVVDSAAFQREVKDVAEFL--YQVL 106 (214)
T ss_dssp ---------------TTCCEEEEEECCCCHHHHH------HHHHHH-GGGEEEEEEEEETTTHHHHHHHHHHHH--HHHH
T ss_pred ---------------CCccEEEEEECCCChhHHH------HHHHHH-HhhCCEEEEEEECCCcCHHHHHHHHHH--HHHH
Confidence 0034689999999966421 122222 234799999999964111111111111 1111
Q ss_pred -----HhhCCCceeeecCCCcCChh
Q 024413 228 -----YKTRLPLVLAFNKTDVAQHE 247 (268)
Q Consensus 228 -----~~~~~p~ilV~NK~Dl~~~~ 247 (268)
.....|+++|+||+|+....
T Consensus 107 ~~~~~~~~~~piilv~nK~Dl~~~~ 131 (214)
T 2fh5_B 107 IDSMALKNSPSLLIACNKQDIAMAK 131 (214)
T ss_dssp HHHHTSTTCCEEEEEEECTTSTTCC
T ss_pred hhhhhcccCCCEEEEEECCCCCCcc
Confidence 12368999999999997653
No 217
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.29 E-value=4.1e-12 Score=107.47 Aligned_cols=69 Identities=20% Similarity=0.057 Sum_probs=39.9
Q ss_pred CCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHH---hhCCCceeeecCCC
Q 024413 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY---KTRLPLVLAFNKTD 242 (268)
Q Consensus 166 ~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~---~~~~p~ilV~NK~D 242 (268)
..+.|||+||+..+... ...+ ...+|++++|+|......... .......+. ..++|+++|+||+|
T Consensus 62 ~~~~i~Dt~G~~~~~~~------~~~~--~~~~d~vilV~D~~~~~s~~~----~~~~l~~i~~~~~~~~piilv~nK~D 129 (223)
T 3cpj_B 62 IKAQIWDTAGQERYRAI------TSAY--YRGAVGALIVYDISKSSSYEN----CNHWLSELRENADDNVAVGLIGNKSD 129 (223)
T ss_dssp EEEEEECCTTTTTTTCC------CGGG--TTTCCEEEEEEC-CCHHHHHH----HHHHHHHHHHHCC--CEEEEEECCGG
T ss_pred EEEEEEECCCccchhhh------HHHH--hccCCEEEEEEeCCCHHHHHH----HHHHHHHHHHhCCCCCeEEEEEECcc
Confidence 36899999998765221 1111 134799999999864322111 111112222 23689999999999
Q ss_pred cCCh
Q 024413 243 VAQH 246 (268)
Q Consensus 243 l~~~ 246 (268)
+...
T Consensus 130 l~~~ 133 (223)
T 3cpj_B 130 LAHL 133 (223)
T ss_dssp GGGG
T ss_pred cccc
Confidence 9764
No 218
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.29 E-value=3.9e-12 Score=113.58 Aligned_cols=77 Identities=17% Similarity=0.114 Sum_probs=43.5
Q ss_pred CCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHH--hhCCCceeeecCCCc
Q 024413 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY--KTRLPLVLAFNKTDV 243 (268)
Q Consensus 166 ~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~--~~~~p~ilV~NK~Dl 243 (268)
.++.|||+||+..+.. .........++ ..+|++++|+|+......... .........+. ..++|+++|+||+|+
T Consensus 52 ~~l~i~Dt~G~~~~~~-~~~~~~~~~~~--~~ad~vi~V~D~t~~~s~~~l-~~~~~~l~~l~~~~~~~piilv~NK~Dl 127 (307)
T 3r7w_A 52 MTLNLWDCGGQDVFME-NYFTKQKDHIF--QMVQVLIHVFDVESTEVLKDI-EIFAKALKQLRKYSPDAKIFVLLHKMDL 127 (307)
T ss_dssp EEEEEEEECCSHHHHH-HHHTTTHHHHH--TTCSEEEEEEETTCSCHHHHH-HHHHHHHHHHHHHCTTCEEEEEEECGGG
T ss_pred eEEEEEECCCcHHHhh-hhhhhHHHHHh--ccCCEEEEEEECCChhhHHHH-HHHHHHHHHHHHhCCCCeEEEEEecccc
Confidence 4689999999965411 00001111122 357999999999654222211 00010111222 237899999999999
Q ss_pred CCh
Q 024413 244 AQH 246 (268)
Q Consensus 244 ~~~ 246 (268)
...
T Consensus 128 ~~~ 130 (307)
T 3r7w_A 128 VQL 130 (307)
T ss_dssp SCH
T ss_pred cch
Confidence 873
No 219
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.28 E-value=3.6e-13 Score=114.14 Aligned_cols=26 Identities=19% Similarity=0.339 Sum_probs=22.5
Q ss_pred CCeEEEEEecCCCCHHHHHHHHHhcc
Q 024413 68 KPVIIIVVGMAGSGKTTFMHRLVCHT 93 (268)
Q Consensus 68 ~g~~v~iiG~~GsGKSTLl~~l~g~~ 93 (268)
....++|+|++|+|||||++.+.|..
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~ 61 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVH 61 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC
Confidence 34679999999999999999999743
No 220
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.28 E-value=1.4e-12 Score=126.76 Aligned_cols=161 Identities=17% Similarity=0.134 Sum_probs=75.5
Q ss_pred EEEEecCCCCHHHHHHHHHhcccC-cccEEEEecccCCCCCc----cccccc-------chhhHHHHHH----HHHHcCC
Q 024413 72 IIVVGMAGSGKTTFMHRLVCHTQS-RNIRGYVMNLDPAVMTL----PFAANI-------DIRDTIRYKE----VMKQFNL 135 (268)
Q Consensus 72 v~iiG~~GsGKSTLl~~l~g~~~~-~~g~i~i~~~~~~~~~~----~~~~~~-------~~~~~~~~~~----~l~~~~l 135 (268)
++|+|+||||||||+++|+|+..| ++|.+++.+.+...... .....+ ...+...+.+ ....++.
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~ 127 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAG 127 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHC
T ss_pred EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcC
Confidence 899999999999999999999988 79999888766311000 000000 0111111111 1111111
Q ss_pred CCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhh------hhhHHHHHHHHHhccCCcEEEEEEcCCC
Q 024413 136 GPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFT------WSASGAIITEAFASTFPTVVTYVVDTPR 209 (268)
Q Consensus 136 ~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~------~~~~~~~i~~~~~~~~~d~vv~vvD~~~ 209 (268)
...+... +.+.++.+....|+++|+||||+..... .......+...+......+++.++++..
T Consensus 128 ~~~~~s~-----------~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~ 196 (608)
T 3szr_A 128 EGMGISH-----------ELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNV 196 (608)
T ss_dssp SSSCCCS-----------CCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSS
T ss_pred Cccccch-----------HHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccc
Confidence 1110000 0011111123479999999998654211 0112222333332233456666666543
Q ss_pred cCCchhhHHHHHHHHHHHHhhCCCceeeecCCCcCChh
Q 024413 210 SANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHE 247 (268)
Q Consensus 210 ~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK~Dl~~~~ 247 (268)
...... .......+...+.+.|+|+||+|++...
T Consensus 197 d~a~~~----~l~la~~v~~~g~rtI~VlTK~Dlv~~g 230 (608)
T 3szr_A 197 DIATTE----ALSMAQEVDPEGDRTIGILTKPDLVDKG 230 (608)
T ss_dssp CTTTCH----HHHHHHHHCSSCCSEEEEEECGGGSSSS
T ss_pred hhccHH----HHHHHHHHhhcCCceEEEecchhhcCcc
Confidence 322222 1111344445567899999999998654
No 221
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.28 E-value=9.2e-11 Score=104.74 Aligned_cols=41 Identities=29% Similarity=0.296 Sum_probs=38.5
Q ss_pred CCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCC
Q 024413 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA 108 (268)
Q Consensus 68 ~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~ 108 (268)
+|++++|+||||||||||+++|+|++.+++|.+.+.+.|..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~ 141 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTF 141 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCC
Confidence 68999999999999999999999999999999999998753
No 222
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.28 E-value=1.9e-12 Score=107.19 Aligned_cols=67 Identities=25% Similarity=0.177 Sum_probs=37.7
Q ss_pred CEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHh------hCCCceeeecC
Q 024413 167 DYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK------TRLPLVLAFNK 240 (268)
Q Consensus 167 ~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~------~~~p~ilV~NK 240 (268)
.+.|+|+||+.++.. .... ....+|++++|+|+.... .+.. .......+.. .++|+++|+||
T Consensus 74 ~~~l~Dt~G~~~~~~------~~~~--~~~~~d~~i~v~d~~~~~---s~~~-~~~~~~~i~~~~~~~~~~~piilv~nK 141 (208)
T 2yc2_C 74 ELFLLDTAGSDLYKE------QISQ--YWNGVYYAILVFDVSSME---SFES-CKAWFELLKSARPDRERPLRAVLVANK 141 (208)
T ss_dssp EEEEEETTTTHHHHH------HHST--TCCCCCEEEEEEETTCHH---HHHH-HHHHHHHHHHHCSCTTSCCEEEEEEEC
T ss_pred EEEEEECCCcHHHHH------HHHH--HHhhCcEEEEEEECCCHH---HHHH-HHHHHHHHHHhhcccccCCcEEEEEEC
Confidence 689999999865411 1111 123479999999986432 2111 1111122222 47899999999
Q ss_pred CCcCC
Q 024413 241 TDVAQ 245 (268)
Q Consensus 241 ~Dl~~ 245 (268)
+|+..
T Consensus 142 ~Dl~~ 146 (208)
T 2yc2_C 142 TDLPP 146 (208)
T ss_dssp C----
T ss_pred cccch
Confidence 99987
No 223
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.28 E-value=4.8e-12 Score=103.56 Aligned_cols=69 Identities=17% Similarity=0.068 Sum_probs=41.2
Q ss_pred CCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHh--hCCCceeeecCCCc
Q 024413 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK--TRLPLVLAFNKTDV 243 (268)
Q Consensus 166 ~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~--~~~p~ilV~NK~Dl 243 (268)
..+.|+|+||+.++.... .. ....+|++++|+|.... ..+..........+.. .+.|+++|+||+|+
T Consensus 55 ~~~~i~Dt~G~~~~~~~~------~~--~~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl 123 (184)
T 1m7b_A 55 IELSLWDTSGSPYYDNVR------PL--SYPDSDAVLICFDISRP---ETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDL 123 (184)
T ss_dssp EEEEEEEECCSGGGTTTG------GG--GCTTCSEEEEEEETTCH---HHHHHHHHTHHHHHHHHCTTCEEEEEEECGGG
T ss_pred EEEEEEECCCChhhhhhH------Hh--hcCCCcEEEEEEECCCH---HHHHHHHHHHHHHHHHHCCCCCEEEEEEcchh
Confidence 368999999987652210 00 12457999999998642 2211100011122222 37899999999999
Q ss_pred CC
Q 024413 244 AQ 245 (268)
Q Consensus 244 ~~ 245 (268)
..
T Consensus 124 ~~ 125 (184)
T 1m7b_A 124 RT 125 (184)
T ss_dssp GG
T ss_pred hc
Confidence 74
No 224
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.27 E-value=9.1e-13 Score=124.74 Aligned_cols=123 Identities=18% Similarity=0.279 Sum_probs=74.4
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccch
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 145 (268)
.+.+..++|+|++|+|||||+|.|++...+ .....++++. +. ......
T Consensus 240 ~r~~~kV~ivG~pnvGKSSLln~L~~~~~a------------~vs~~~gTT~-d~-----------------~~~~i~-- 287 (482)
T 1xzp_A 240 LNRGLRMVIVGKPNVGKSTLLNRLLNEDRA------------IVTDIPGTTR-DV-----------------ISEEIV-- 287 (482)
T ss_dssp HHHCEEEEEECCHHHHTCHHHHHHHHHTBC------------CCCCSSCCSS-CS-----------------CCEEEE--
T ss_pred ccCCCEEEEECcCCCcHHHHHHHHHCCCCC------------ccCCCCCeee-ee-----------------EEEEEe--
Confidence 456788999999999999999999997543 1222222210 00 000000
Q ss_pred hhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCc-chhhhhh--HHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHH
Q 024413 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQI-EIFTWSA--SGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLY 222 (268)
Q Consensus 146 ~~lS~G~~qr~~ia~al~~~~~illlDePG~~-~~~~~~~--~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~ 222 (268)
..+.++.|+||||+. ++..... .......++ ..+|++++|+|+.......+.. +
T Consensus 288 -----------------~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~--~~aD~vl~VvD~s~~~s~~~~~--i-- 344 (482)
T 1xzp_A 288 -----------------IRGILFRIVDTAGVRSETNDLVERLGIERTLQEI--EKADIVLFVLDASSPLDEEDRK--I-- 344 (482)
T ss_dssp -----------------ETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH--HHCSEEEEEEETTSCCCHHHHH--H--
T ss_pred -----------------cCCeEEEEEECCCccccchhhHHHHHHHHHHHHh--hcccEEEEEecCCCCCCHHHHH--H--
Confidence 124469999999998 6422111 011222233 3479999999997655443311 1
Q ss_pred HHHHHHhhCCCceeeecCCCcCCh
Q 024413 223 ACSILYKTRLPLVLAFNKTDVAQH 246 (268)
Q Consensus 223 ~~~~l~~~~~p~ilV~NK~Dl~~~ 246 (268)
++.+ .++|+++|+||+|+...
T Consensus 345 -l~~l--~~~piivV~NK~DL~~~ 365 (482)
T 1xzp_A 345 -LERI--KNKRYLVVINKVDVVEK 365 (482)
T ss_dssp -HHHH--TTSSEEEEEEECSSCCC
T ss_pred -HHHh--cCCCEEEEEECcccccc
Confidence 2222 37899999999999753
No 225
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.27 E-value=1.2e-11 Score=112.40 Aligned_cols=78 Identities=12% Similarity=0.082 Sum_probs=49.4
Q ss_pred CCCEEEEeCCCCcchhh----hh---hHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceee
Q 024413 165 HLDYVLVDTPGQIEIFT----WS---ASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLA 237 (268)
Q Consensus 165 ~~~illlDePG~~~~~~----~~---~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV 237 (268)
.+++.|+||||+..... .. .....+..++ ....++|++++|+...+...++. ..+..+...+.|+++|
T Consensus 129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiL~v~~a~~~~~~~~~~----~i~~~~~~~~~~~i~V 203 (353)
T 2x2e_A 129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFV-TKENCLILAVSPANSDLANSDAL----KVAKEVDPQGQRTIGV 203 (353)
T ss_dssp CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHH-TSTTEEEEEEEETTSCGGGCHHH----HHHHHHCTTCTTEEEE
T ss_pred CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHH-cCCCeEEEEEecCCCccchhHHH----HHHHHhCcCCCceEEE
Confidence 46899999999865211 11 1222333333 35568888899987655544432 1134444567899999
Q ss_pred ecCCCcCChh
Q 024413 238 FNKTDVAQHE 247 (268)
Q Consensus 238 ~NK~Dl~~~~ 247 (268)
+||+|+.++.
T Consensus 204 ~NK~Dl~~~~ 213 (353)
T 2x2e_A 204 ITKLDLMDEG 213 (353)
T ss_dssp EECGGGSCTT
T ss_pred eccccccCcc
Confidence 9999998654
No 226
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.26 E-value=5.8e-11 Score=109.83 Aligned_cols=72 Identities=22% Similarity=0.226 Sum_probs=47.5
Q ss_pred CCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcC-CchhhHHHHHHHHHHHHhhC-CCceeeecCCCc
Q 024413 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA-NPMTFMSNMLYACSILYKTR-LPLVLAFNKTDV 243 (268)
Q Consensus 166 ~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~-~~~~~~~~~~~~~~~l~~~~-~p~ilV~NK~Dl 243 (268)
..+.|+|+||+.++.. .....+ ..+|++++|+|+.... .++.. .. +..+...+ .|+++|+||+|+
T Consensus 75 ~~~~iiDtPGh~~~~~------~~~~~~--~~~D~~ilVvda~~~~~~~qt~--~~---~~~~~~~~~~~iivviNK~Dl 141 (403)
T 3sjy_A 75 RRISFIDAPGHEVLMA------TMLSGA--ALMDGAILVVAANEPFPQPQTR--EH---FVALGIIGVKNLIIVQNKVDV 141 (403)
T ss_dssp EEEEEEECCCCGGGHH------HHHHHH--TTCSEEEEEEETTSCSSCHHHH--HH---HHHHHHHTCCCEEEEEECGGG
T ss_pred ceEEEEECCCcHHHHH------HHHHHH--hhCCEEEEEEECCCCCCcHHHH--HH---HHHHHHcCCCCEEEEEECccc
Confidence 4689999999866522 333333 4589999999998765 33221 11 22333334 489999999999
Q ss_pred CChhhhh
Q 024413 244 AQHEFAL 250 (268)
Q Consensus 244 ~~~~~~~ 250 (268)
+++++..
T Consensus 142 ~~~~~~~ 148 (403)
T 3sjy_A 142 VSKEEAL 148 (403)
T ss_dssp SCHHHHH
T ss_pred cchHHHH
Confidence 9876443
No 227
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.26 E-value=2.4e-12 Score=106.58 Aligned_cols=68 Identities=16% Similarity=0.133 Sum_probs=40.8
Q ss_pred CEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHh--hCCCceeeecCCCcC
Q 024413 167 DYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK--TRLPLVLAFNKTDVA 244 (268)
Q Consensus 167 ~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~--~~~p~ilV~NK~Dl~ 244 (268)
.+.|+|+||+.++.... ..+ ...+|++++|+|.... ..+..........+.. .+.|+++|+||+|+.
T Consensus 69 ~~~i~Dt~G~~~~~~~~------~~~--~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 137 (201)
T 2q3h_A 69 RLQLCDTAGQDEFDKLR------PLC--YTNTDIFLLCFSVVSP---SSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLR 137 (201)
T ss_dssp EEEEEECCCSTTCSSSG------GGG--GTTCSEEEEEEETTCH---HHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGG
T ss_pred EEEEEECCCCHHHHHHh------Hhh--cCCCcEEEEEEECCCH---HHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhh
Confidence 57799999997653211 111 2347999999998543 2211100011122222 378999999999997
Q ss_pred C
Q 024413 245 Q 245 (268)
Q Consensus 245 ~ 245 (268)
.
T Consensus 138 ~ 138 (201)
T 2q3h_A 138 E 138 (201)
T ss_dssp G
T ss_pred h
Confidence 5
No 228
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.26 E-value=1.6e-12 Score=107.91 Aligned_cols=71 Identities=17% Similarity=0.162 Sum_probs=39.6
Q ss_pred CCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHh---hCCCceeeecCCC
Q 024413 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK---TRLPLVLAFNKTD 242 (268)
Q Consensus 166 ~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~---~~~p~ilV~NK~D 242 (268)
..+.|+|+||+.++.... ..++ ..+|++++|+|+... ..+.. .......+.. .+.|+++|+||+|
T Consensus 82 ~~~~i~Dt~G~~~~~~~~------~~~~--~~~d~~i~v~d~~~~---~s~~~-~~~~~~~i~~~~~~~~p~ilv~nK~D 149 (199)
T 3l0i_B 82 IKLQIWDTAGQERFRTIT------SSYY--RGAHGIIVVYDVTDQ---ESFNN-VKQWLQEIDRYASENVNKLLVGNKCD 149 (199)
T ss_dssp EEEEEECCTTCTTCCCCS------CC----CCCSEEEECC-CCCS---HHHHH-HHHHHHHHHSCC-CCSEEEEC-CCSS
T ss_pred EEEEEEECCCcHhHHHHH------HHHh--hcCCEEEEEEECCCH---HHHHH-HHHHHHHHHHhccCCCCEEEEEECcc
Confidence 368999999987652211 1111 347999999998643 22111 1111222322 2689999999999
Q ss_pred cCChhh
Q 024413 243 VAQHEF 248 (268)
Q Consensus 243 l~~~~~ 248 (268)
+.+.+.
T Consensus 150 l~~~~~ 155 (199)
T 3l0i_B 150 LTTKKV 155 (199)
T ss_dssp CC--CC
T ss_pred CCcccc
Confidence 976543
No 229
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.26 E-value=4.8e-12 Score=104.98 Aligned_cols=27 Identities=30% Similarity=0.501 Sum_probs=23.3
Q ss_pred CCeEEEEEecCCCCHHHHHHHHHhccc
Q 024413 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQ 94 (268)
Q Consensus 68 ~g~~v~iiG~~GsGKSTLl~~l~g~~~ 94 (268)
....++|+|++|+|||||++.|.+...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~ 33 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKF 33 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCC
Confidence 346789999999999999999998653
No 230
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.26 E-value=6.9e-13 Score=118.50 Aligned_cols=99 Identities=9% Similarity=0.013 Sum_probs=65.6
Q ss_pred cccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecc-cCCCCCccccc-ccchh--hHHHHHHHHHHcCCCCCCC
Q 024413 65 FKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNL-DPAVMTLPFAA-NIDIR--DTIRYKEVMKQFNLGPNGG 140 (268)
Q Consensus 65 ~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~-~~~~~~~~~~~-~~~~~--~~~~~~~~l~~~~l~~~~~ 140 (268)
.+++|++++|+||||||||||+++|+|++ +|.|..... ++.....+..+ ++... ....+.+.++.+ |.. .
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~~v~q~~~lf~~ti~~~ni~~~~~~~~~~~~~i~~~-L~~--g 195 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVLSFANHKSHFWLASLADTRAALVDDATHACWRYFDTY-LRN--A 195 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEECGGGTTSGGGGGGGTTCSCEEEEEECHHHHHHHHHT-TTG--G
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEEEEecCccccccccHHHHhhccCccccHHHHHHHHHH-hHc--c
Confidence 48999999999999999999999999998 788865322 11111111121 22211 011344555553 221 1
Q ss_pred cccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 024413 141 ILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQ 176 (268)
Q Consensus 141 ~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~ 176 (268)
.. ...|||||||| |||++.+|+++| |.++
T Consensus 196 ld--g~~LSgGqkQR---ARAll~~p~iLl--Ts~L 224 (305)
T 2v9p_A 196 LD--GYPVSIDRKHK---AAVQIKAPPLLV--TSNI 224 (305)
T ss_dssp GG--TCCEECCCSSC---CCCEECCCCEEE--EESS
T ss_pred CC--ccCcCHHHHHH---HHHHhCCCCEEE--ECCC
Confidence 11 56799999999 999999999999 5554
No 231
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.25 E-value=3.5e-11 Score=115.12 Aligned_cols=69 Identities=20% Similarity=0.258 Sum_probs=50.3
Q ss_pred CCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeecCCCcC
Q 024413 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA 244 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK~Dl~ 244 (268)
+..+.||||||+.++.. ....++ ..+|++|+|+|+..+....... .+..+...++|+++|+||+|+.
T Consensus 81 ~~~i~liDTPG~~df~~------~~~~~l--~~aD~allVvDa~~g~~~~t~~-----~~~~~~~~~iPiivviNK~Dl~ 147 (528)
T 3tr5_A 81 DYLINLLDTPGHADFTE------DTYRTL--TAVDSALMVIDAAKGVEPRTIK-----LMEVCRLRHTPIMTFINKMDRD 147 (528)
T ss_dssp TEEEEEECCCCSTTCCH------HHHHGG--GGCSEEEEEEETTTCSCHHHHH-----HHHHHHTTTCCEEEEEECTTSC
T ss_pred CEEEEEEECCCchhHHH------HHHHHH--HhCCEEEEEEeCCCCCCHHHHH-----HHHHHHHcCCCEEEEEeCCCCc
Confidence 45789999999988633 222222 3479999999998876655421 2455667789999999999997
Q ss_pred Ch
Q 024413 245 QH 246 (268)
Q Consensus 245 ~~ 246 (268)
..
T Consensus 148 ~~ 149 (528)
T 3tr5_A 148 TR 149 (528)
T ss_dssp CS
T ss_pred cc
Confidence 54
No 232
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.25 E-value=7.2e-12 Score=112.99 Aligned_cols=117 Identities=19% Similarity=0.245 Sum_probs=65.8
Q ss_pred cCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccchh
Q 024413 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (268)
Q Consensus 67 ~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 146 (268)
++...++|+|.+|+|||||++.|.+...... .. ... ..+. . +.
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~----~p----T~~-~~~~-~--~~------------------------- 205 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT----IP----TIG-FNVE-T--VE------------------------- 205 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE----EE----ETT-EEEE-E--EE-------------------------
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCc----cc----ccc-eEEE-E--Ee-------------------------
Confidence 4556899999999999999999987543211 00 000 0000 0 00
Q ss_pred hhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHH
Q 024413 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (268)
Q Consensus 147 ~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~ 226 (268)
..+..+.|+||||+..+.. ....++ ..+|++++|+|+.......... ......
T Consensus 206 ----------------~~~~~l~i~Dt~G~~~~~~------~~~~~~--~~ad~vilV~D~~~~~s~~~~~---~~~~~~ 258 (329)
T 3o47_A 206 ----------------YKNISFTVWDVGGQDKIRP------LWRHYF--QNTQGLIFVVDSNDRERVNEAR---EELMRM 258 (329)
T ss_dssp ----------------ETTEEEEEEECC-----CC------SHHHHH--TTEEEEEEEEETTCSSSHHHHH---HHHHHH
T ss_pred ----------------cCcEEEEEEECCCCHhHHH------HHHHHh--ccCCEEEEEEECCchHHHHHHH---HHHHHH
Confidence 1144689999999876532 122223 3479999999996432222211 111122
Q ss_pred HHh---hCCCceeeecCCCcCChh
Q 024413 227 LYK---TRLPLVLAFNKTDVAQHE 247 (268)
Q Consensus 227 l~~---~~~p~ilV~NK~Dl~~~~ 247 (268)
+.. .++|+++|+||+|+.+..
T Consensus 259 ~~~~~~~~~piilV~NK~Dl~~~~ 282 (329)
T 3o47_A 259 LAEDELRDAVLLVFANKQDLPNAM 282 (329)
T ss_dssp HTCGGGTTCEEEEEEECTTSTTCC
T ss_pred HhhhccCCCeEEEEEECccCCccc
Confidence 222 378999999999997653
No 233
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.24 E-value=8.4e-12 Score=104.61 Aligned_cols=69 Identities=17% Similarity=0.058 Sum_probs=41.4
Q ss_pred CCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHh--hCCCceeeecCCCc
Q 024413 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK--TRLPLVLAFNKTDV 243 (268)
Q Consensus 166 ~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~--~~~p~ilV~NK~Dl 243 (268)
..+.|||+||+..+... ... ....+|++++|+|.... ..+..........+.. .+.|+++|+||+|+
T Consensus 76 ~~l~i~Dt~G~~~~~~~------~~~--~~~~~d~~ilv~D~~~~---~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl 144 (205)
T 1gwn_A 76 IELSLWDTSGSPYYDNV------RPL--SYPDSDAVLICFDISRP---ETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDL 144 (205)
T ss_dssp EEEEEEEECCSGGGTTT------GGG--GCTTCSEEEEEEETTCH---HHHHHHHHTHHHHHHHHCTTCEEEEEEECGGG
T ss_pred EEEEEEeCCCcHhhhHH------HHh--hccCCCEEEEEEECCCH---HHHHHHHHHHHHHHHHHCCCCCEEEEEechhh
Confidence 36899999998765221 001 12457999999998643 2211110111122222 37899999999999
Q ss_pred CC
Q 024413 244 AQ 245 (268)
Q Consensus 244 ~~ 245 (268)
..
T Consensus 145 ~~ 146 (205)
T 1gwn_A 145 RT 146 (205)
T ss_dssp GG
T ss_pred cc
Confidence 74
No 234
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.24 E-value=7.9e-11 Score=111.16 Aligned_cols=161 Identities=15% Similarity=0.129 Sum_probs=86.9
Q ss_pred cccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcc
Q 024413 63 INFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGIL 142 (268)
Q Consensus 63 ~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 142 (268)
...+.+|.+++|+|+||||||||+++|+|++.+++|.|.+.+.+.... ........+....++.-....
T Consensus 287 sl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~----------aa~eQL~~~~~r~~I~vV~Q~- 355 (503)
T 2yhs_A 287 NVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRA----------AAVEQLQVWGQRNNIPVIAQH- 355 (503)
T ss_dssp CCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCH----------HHHHHHHHHHHHHTCCEECCS-
T ss_pred eeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccch----------hhHHHHHHHHHhcCceEEecc-
Confidence 334788999999999999999999999999999999999987654210 000000011011122100000
Q ss_pred cchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhh-hhHHHHHHHHHhc---cCCcEEEEEEcCCCcCCchhhHH
Q 024413 143 TSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTW-SASGAIITEAFAS---TFPTVVTYVVDTPRSANPMTFMS 218 (268)
Q Consensus 143 ~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~-~~~~~~i~~~~~~---~~~d~vv~vvD~~~~~~~~~~~~ 218 (268)
. .+.....-+-.+..+...+.+++|+||+|....... ......+....+. ...+-+++++|+..+.+..+.
T Consensus 356 --~-~~~p~~tV~e~l~~a~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~-- 430 (503)
T 2yhs_A 356 --T-GADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQ-- 430 (503)
T ss_dssp --T-TCCHHHHHHHHHHHHHHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHH--
T ss_pred --c-CcCHHHHHHHHHHHHHhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHH--
Confidence 0 011111111223334456889999999998543111 1111222222221 225788889998544222111
Q ss_pred HHHHHHHHHHhhCCCceeeecCCCcC
Q 024413 219 NMLYACSILYKTRLPLVLAFNKTDVA 244 (268)
Q Consensus 219 ~~~~~~~~l~~~~~p~ilV~NK~Dl~ 244 (268)
...+...--...+|+||.|-.
T Consensus 431 -----ak~f~~~~~itgvIlTKLD~t 451 (503)
T 2yhs_A 431 -----AKLFHEAVGLTGITLTKLDGT 451 (503)
T ss_dssp -----HHHHHHHTCCSEEEEECGGGC
T ss_pred -----HHHHHhhcCCCEEEEEcCCCc
Confidence 122222222456899999964
No 235
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.24 E-value=5e-12 Score=117.79 Aligned_cols=73 Identities=22% Similarity=0.273 Sum_probs=47.8
Q ss_pred CEEEEeCCCCcchhhhhh-HHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeecCCCcCC
Q 024413 167 DYVLVDTPGQIEIFTWSA-SGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQ 245 (268)
Q Consensus 167 ~illlDePG~~~~~~~~~-~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK~Dl~~ 245 (268)
++.|+||||+.++..... .......++ ..+|++++|+|+ ...... ......+...++|+++|+||+|+.+
T Consensus 84 ~l~liDTpG~~d~~~l~~~~~~~~~~~l--~~aD~vllVvD~--~~~~~~-----~~~l~~l~~~~~piIvV~NK~Dl~~ 154 (423)
T 3qq5_A 84 PVTLVDTPGLDDVGELGRLRVEKARRVF--YRADCGILVTDS--APTPYE-----DDVVNLFKEMEIPFVVVVNKIDVLG 154 (423)
T ss_dssp EEEEEECSSTTCCCTTCCCCHHHHHHHH--TSCSEEEEECSS--SCCHHH-----HHHHHHHHHTTCCEEEECCCCTTTT
T ss_pred eEEEEECcCCCcccchhHHHHHHHHHHH--hcCCEEEEEEeC--CChHHH-----HHHHHHHHhcCCCEEEEEeCcCCCC
Confidence 689999999987633211 122222333 358999999999 233222 1223555667899999999999987
Q ss_pred hhh
Q 024413 246 HEF 248 (268)
Q Consensus 246 ~~~ 248 (268)
.+.
T Consensus 155 ~~~ 157 (423)
T 3qq5_A 155 EKA 157 (423)
T ss_dssp CCC
T ss_pred ccH
Confidence 654
No 236
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.24 E-value=2.1e-11 Score=106.97 Aligned_cols=106 Identities=16% Similarity=0.168 Sum_probs=66.2
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCc----------cc-EEEEecccCCCCCcccccccch-hhHHHHHHHHHHc
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSR----------NI-RGYVMNLDPAVMTLPFAANIDI-RDTIRYKEVMKQF 133 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~----------~g-~i~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~ 133 (268)
+.+|.+++|+|+||||||||+..+++....- .+ .+|+...+...........+.. .......++++.+
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~~~~~~r~~~~g~~~~~~~~~~~~~~l 106 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHALGAHLSAEERQAVADGL 106 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCHHHHHHHHHHHHTTSCHHHHHHHHHHE
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCHHHHHHHHHHHHhhcChhhhhhccCce
Confidence 6799999999999999999999999865431 22 2344332211000000000000 0112234456777
Q ss_pred CCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 024413 134 NLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQ 176 (268)
Q Consensus 134 ~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~ 176 (268)
.+.+..... +..||+|+.+++ ++++.+|+++++|||..
T Consensus 107 ~l~~~~~~~--~~~ls~g~~~~i---~~l~~~~~livlDe~~~ 144 (279)
T 1nlf_A 107 LIQPLIGSL--PNIMAPEWFDGL---KRAAEGRRLMVLDTLRR 144 (279)
T ss_dssp EECCCTTSC--CCTTSHHHHHHH---HHHHTTCSEEEEECGGG
T ss_pred EEeecCCCC--cccCCHHHHHHH---HHhcCCCCEEEECCHHH
Confidence 766544333 778999997765 56777999999999987
No 237
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=99.23 E-value=6.9e-11 Score=110.21 Aligned_cols=158 Identities=18% Similarity=0.127 Sum_probs=92.5
Q ss_pred cCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccchh
Q 024413 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (268)
Q Consensus 67 ~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 146 (268)
.++.+++++|++||||||++..|++.+...++.+.+.+.|+... ........+.+..++.-.....
T Consensus 95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~----------~a~eqL~~~~~~~gv~~~~~~~---- 160 (433)
T 3kl4_A 95 KLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRP----------AAYDQLLQLGNQIGVQVYGEPN---- 160 (433)
T ss_dssp SSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCH----------HHHHHHHHHHHTTTCCEECCTT----
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccch----------hHHHHHHHHHHhcCCceeeccc----
Confidence 35889999999999999999999999988888888877664211 0111122222333432111100
Q ss_pred hhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHH
Q 024413 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (268)
Q Consensus 147 ~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~ 226 (268)
....-...+-++..+...+++++|+||||...+.........+....+....+.+++|+|+..+-+.... ...
T Consensus 161 ~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~-------a~~ 233 (433)
T 3kl4_A 161 NQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDL-------ASR 233 (433)
T ss_dssp CSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHH-------HHH
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHH-------HHH
Confidence 0011111122344444568999999999974411122333344443333456899999999764222111 123
Q ss_pred HHhhCCCceeeecCCCcCC
Q 024413 227 LYKTRLPLVLAFNKTDVAQ 245 (268)
Q Consensus 227 l~~~~~p~ilV~NK~Dl~~ 245 (268)
....-.+..+|+||+|...
T Consensus 234 f~~~~~~~gVIlTKlD~~a 252 (433)
T 3kl4_A 234 FHQASPIGSVIITKMDGTA 252 (433)
T ss_dssp HHHHCSSEEEEEECGGGCS
T ss_pred HhcccCCcEEEEecccccc
Confidence 3333356889999999864
No 238
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.23 E-value=4.4e-13 Score=111.84 Aligned_cols=123 Identities=14% Similarity=0.149 Sum_probs=68.7
Q ss_pred CeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCccccccc--chhhHHHHHHHHHHcCCCCCC-----Cc
Q 024413 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANI--DIRDTIRYKEVMKQFNLGPNG-----GI 141 (268)
Q Consensus 69 g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~-----~~ 141 (268)
|++++|+|+||||||||+++|+|.++ ++| +.+.+.+..... .....+ ...+.......+..+...... ..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~-~~~~~ig~~~~~~~g~~~~l~~~~~~~~~~~~~~~v 77 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVR-QGGRRIGFDVVTLSGTRGPLSRVGLEPPPGKRECRV 77 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEE-TTSSEEEEEEEETTSCEEEEEECCCCCCSSSCCEES
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhH-hhhceEEEEEEecccceehhhcccccCCcccccccc
Confidence 56789999999999999999999998 888 777664431000 000000 000000000001111111110 11
Q ss_pred ccchhhhcHHHHHHHHH-HH---HHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhc
Q 024413 142 LTSLNLFTTKFDEVISL-IE---RRADHLDYVLVDTPGQIEIFTWSASGAIITEAFAS 195 (268)
Q Consensus 142 ~~~~~~lS~G~~qr~~i-a~---al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~ 195 (268)
..+...+|+|+++++.. .+ |+..+|+++|+||||-.+... ......+.+.+..
T Consensus 78 ~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~-~~~~~~l~~~l~~ 134 (189)
T 2i3b_A 78 GQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFS-QLFIQAVRQTLST 134 (189)
T ss_dssp SSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTC-SHHHHHHHHHHHC
T ss_pred ceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCcccccc-HHHHHHHHHHHhC
Confidence 22245699999988744 33 478899999999987654322 2234444444543
No 239
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.23 E-value=2.5e-11 Score=112.88 Aligned_cols=29 Identities=28% Similarity=0.416 Sum_probs=24.9
Q ss_pred eEEEEEecCCCCHHHHHHHHHhcccCccc
Q 024413 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNI 98 (268)
Q Consensus 70 ~~v~iiG~~GsGKSTLl~~l~g~~~~~~g 98 (268)
..++|+|+||||||||+|+|+|...+..+
T Consensus 32 f~I~lvG~sGaGKSTLln~L~g~~~~~~~ 60 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLFLTDLYSPE 60 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTCCCCCCC
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCCCCCC
Confidence 45799999999999999999999875443
No 240
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.22 E-value=2e-10 Score=102.01 Aligned_cols=154 Identities=18% Similarity=0.136 Sum_probs=92.3
Q ss_pred CCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccchhh
Q 024413 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (268)
Q Consensus 68 ~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 147 (268)
+|.+++++|++|+||||++..|++...+.++.+.+.+.|+... .. ......+.+..++...... ..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~---~~-------~~ql~~~~~~~~l~~~~~~----~~ 162 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRP---AA-------REQLRLLGEKVGVPVLEVM----DG 162 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCH---HH-------HHHHHHHHHHHTCCEEECC----TT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccH---hH-------HHHHHHhcccCCeEEEEcC----CC
Confidence 7899999999999999999999999998899999988765311 00 0111223344555421100 00
Q ss_pred hcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHH
Q 024413 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (268)
Q Consensus 148 lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l 227 (268)
......++.+++.+...+++++|+||||.... .......+.+......++.+++++|+... .+.... ....
T Consensus 163 ~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~--d~~~~~~l~~~~~~~~~~~~~lv~~~~~~---~~~~~~----~~~~ 233 (295)
T 1ls1_A 163 ESPESIRRRVEEKARLEARDLILVDTAGRLQI--DEPLMGELARLKEVLGPDEVLLVLDAMTG---QEALSV----ARAF 233 (295)
T ss_dssp CCHHHHHHHHHHHHHHHTCCEEEEECCCCSSC--CHHHHHHHHHHHHHHCCSEEEEEEEGGGT---HHHHHH----HHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEeCCCCccc--cHHHHHHHHHHhhhcCCCEEEEEEeCCCc---HHHHHH----HHHH
Confidence 12223356777777778999999999976432 11122222222222347888899998532 222211 1222
Q ss_pred HhhCCC-ceeeecCCCcCC
Q 024413 228 YKTRLP-LVLAFNKTDVAQ 245 (268)
Q Consensus 228 ~~~~~p-~ilV~NK~Dl~~ 245 (268)
.. ..+ .-+|+||+|...
T Consensus 234 ~~-~~~i~givlnk~d~~~ 251 (295)
T 1ls1_A 234 DE-KVGVTGLVLTKLDGDA 251 (295)
T ss_dssp HH-HTCCCEEEEECGGGCS
T ss_pred hh-cCCCCEEEEECCCCCc
Confidence 22 233 457999999754
No 241
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.21 E-value=4.2e-11 Score=113.35 Aligned_cols=71 Identities=24% Similarity=0.347 Sum_probs=49.2
Q ss_pred CCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeecCCCcC
Q 024413 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA 244 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK~Dl~ 244 (268)
+..+.|+|+||+.++.. ..... ...+|++++|+|+..+..++... .+..+...++|.++|+||+|+.
T Consensus 72 ~~~i~iiDtPGh~~~~~------~~~~~--~~~aD~~ilVvda~~g~~~qt~e-----~l~~~~~~~ip~IvviNK~Dl~ 138 (482)
T 1wb1_A 72 NYRITLVDAPGHADLIR------AVVSA--ADIIDLALIVVDAKEGPKTQTGE-----HMLILDHFNIPIIVVITKSDNA 138 (482)
T ss_dssp TEEEEECCCSSHHHHHH------HHHHH--TTSCCEEEEEEETTTCSCHHHHH-----HHHHHHHTTCCBCEEEECTTSS
T ss_pred CEEEEEEECCChHHHHH------HHHHH--HhhCCEEEEEEecCCCccHHHHH-----HHHHHHHcCCCEEEEEECCCcc
Confidence 34799999999855411 22222 24579999999998776554422 1234456789999999999998
Q ss_pred Chhh
Q 024413 245 QHEF 248 (268)
Q Consensus 245 ~~~~ 248 (268)
+++.
T Consensus 139 ~~~~ 142 (482)
T 1wb1_A 139 GTEE 142 (482)
T ss_dssp CHHH
T ss_pred cchh
Confidence 7543
No 242
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.21 E-value=2.2e-11 Score=110.49 Aligned_cols=78 Identities=22% Similarity=0.252 Sum_probs=46.2
Q ss_pred CCEEEEeCCCCcchhhh-hhHHHHHHHHHhccCCcEEEEEEcCCCc--CCchhhHHHHHHHHHHHHh-----hCCCceee
Q 024413 166 LDYVLVDTPGQIEIFTW-SASGAIITEAFASTFPTVVTYVVDTPRS--ANPMTFMSNMLYACSILYK-----TRLPLVLA 237 (268)
Q Consensus 166 ~~illlDePG~~~~~~~-~~~~~~i~~~~~~~~~d~vv~vvD~~~~--~~~~~~~~~~~~~~~~l~~-----~~~p~ilV 237 (268)
.++.|+|+||+.+.... ........+.+ ..++++++|+|+... .++....... ...+.. ..+|+++|
T Consensus 206 ~~~~l~DtPG~i~~a~~~~~l~~~fl~~i--~~~d~ll~VvD~s~~~~~~~~~~~~~~---~~eL~~~~~~l~~~p~ilV 280 (342)
T 1lnz_A 206 RSFVMADLPGLIEGAHQGVGLGHQFLRHI--ERTRVIVHVIDMSGLEGRDPYDDYLTI---NQELSEYNLRLTERPQIIV 280 (342)
T ss_dssp CEEEEEEHHHHHHHTTCTTTTHHHHHHHH--HHCCEEEEEEESSCSSCCCHHHHHHHH---HHHHHHSCSSTTTSCBCBE
T ss_pred ceEEEecCCCCcccccccchhHHHHHHHH--HhccEEEEEEECCcccccChHHHHHHH---HHHHHHhhhhhcCCCEEEE
Confidence 57999999998653211 11222233332 337999999999652 1222211111 223332 47899999
Q ss_pred ecCCCcCChhh
Q 024413 238 FNKTDVAQHEF 248 (268)
Q Consensus 238 ~NK~Dl~~~~~ 248 (268)
+||+|+...++
T Consensus 281 ~NK~Dl~~~~e 291 (342)
T 1lnz_A 281 ANKMDMPEAAE 291 (342)
T ss_dssp EECTTSTTHHH
T ss_pred EECccCCCCHH
Confidence 99999987653
No 243
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.21 E-value=6.7e-11 Score=99.78 Aligned_cols=98 Identities=20% Similarity=0.268 Sum_probs=61.0
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccC-------cccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCC
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQS-------RNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPN 138 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~-------~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 138 (268)
+++|++++|+||||||||||+++|+|...+ ..+.+++.+.+.. ...++..+.+.+++.+.
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~-------------~~~~i~~~~~~~~~~~~ 88 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF-------------RPERIREIAQNRGLDPD 88 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC-------------CHHHHHHHHHHTTSCHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC-------------CHHHHHHHHHHcCCCHH
Confidence 789999999999999999999999996655 3446776654321 11223344455554421
Q ss_pred ---CCcccchhhhcHHHH-HHHHHHHHHhc-------CCCEEEEeCCCCc
Q 024413 139 ---GGILTSLNLFTTKFD-EVISLIERRAD-------HLDYVLVDTPGQI 177 (268)
Q Consensus 139 ---~~~~~~~~~lS~G~~-qr~~ia~al~~-------~~~illlDePG~~ 177 (268)
.... ....++.+++ +.+..+.+++. +|+++++|||...
T Consensus 89 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~ 137 (231)
T 4a74_A 89 EVLKHIY-VARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 137 (231)
T ss_dssp HHHHTEE-EEECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHH
T ss_pred HHhhcEE-EEecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHH
Confidence 0000 0122344443 33455555444 8999999999875
No 244
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.21 E-value=1.7e-12 Score=107.66 Aligned_cols=24 Identities=21% Similarity=0.408 Sum_probs=21.6
Q ss_pred eEEEEEecCCCCHHHHHHHHHhcc
Q 024413 70 VIIIVVGMAGSGKTTFMHRLVCHT 93 (268)
Q Consensus 70 ~~v~iiG~~GsGKSTLl~~l~g~~ 93 (268)
..++|+|++|+|||||++.+.|..
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~~ 30 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGVH 30 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcCc
Confidence 578999999999999999999753
No 245
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.20 E-value=2e-11 Score=98.76 Aligned_cols=26 Identities=31% Similarity=0.505 Sum_probs=22.7
Q ss_pred CeEEEEEecCCCCHHHHHHHHHhccc
Q 024413 69 PVIIIVVGMAGSGKTTFMHRLVCHTQ 94 (268)
Q Consensus 69 g~~v~iiG~~GsGKSTLl~~l~g~~~ 94 (268)
...++|+|++|+|||||++.+.+...
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~~~ 32 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTGSY 32 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCC
Confidence 35789999999999999999998643
No 246
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.20 E-value=4.5e-11 Score=111.89 Aligned_cols=73 Identities=12% Similarity=0.217 Sum_probs=46.3
Q ss_pred CCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhH--HHHHHHHHHHHhhCCC-ceeeecCC
Q 024413 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFM--SNMLYACSILYKTRLP-LVLAFNKT 241 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~--~~~~~~~~~l~~~~~p-~ilV~NK~ 241 (268)
+..+.|+||||+.++.. .....+ ..+|++++|+|+..+.....+. .+....+..+...++| +|+|+||+
T Consensus 94 ~~~~~iiDTPGh~~f~~------~~~~~~--~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~ 165 (439)
T 3j2k_7 94 KKHFTILDAPGHKSFVP------NMIGGA--SQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKM 165 (439)
T ss_pred CeEEEEEECCChHHHHH------HHHhhH--hhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecC
Confidence 45799999999876522 233332 3479999999998764311000 0111123444556788 89999999
Q ss_pred CcCC
Q 024413 242 DVAQ 245 (268)
Q Consensus 242 Dl~~ 245 (268)
|+..
T Consensus 166 Dl~~ 169 (439)
T 3j2k_7 166 DDPT 169 (439)
T ss_pred CCcc
Confidence 9964
No 247
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.20 E-value=9.2e-11 Score=108.50 Aligned_cols=68 Identities=21% Similarity=0.276 Sum_probs=47.7
Q ss_pred CCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCC-ceeeecCCCc
Q 024413 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLP-LVLAFNKTDV 243 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p-~ilV~NK~Dl 243 (268)
+.++.|+||||+.++.. .....+ ..+|++++|+|+..+...+. ...+..+...++| +++|+||+|+
T Consensus 74 ~~~~~iiDtpG~~~f~~------~~~~~~--~~aD~~ilVvda~~g~~~qt-----~~~l~~~~~~~ip~iivviNK~Dl 140 (405)
T 2c78_A 74 KRHYSHVDCPGHADYIK------NMITGA--AQMDGAILVVSAADGPMPQT-----REHILLARQVGVPYIVVFMNKVDM 140 (405)
T ss_dssp SCEEEEEECCCSGGGHH------HHHHHH--TTCSSEEEEEETTTCCCHHH-----HHHHHHHHHTTCCCEEEEEECGGG
T ss_pred CeEEEEEECCChHHHHH------HHHHHH--HHCCEEEEEEECCCCCcHHH-----HHHHHHHHHcCCCEEEEEEECccc
Confidence 46799999999987522 333333 45799999999987654433 1123444566889 7899999999
Q ss_pred CC
Q 024413 244 AQ 245 (268)
Q Consensus 244 ~~ 245 (268)
.+
T Consensus 141 ~~ 142 (405)
T 2c78_A 141 VD 142 (405)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 248
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.20 E-value=3e-11 Score=114.39 Aligned_cols=116 Identities=18% Similarity=0.210 Sum_probs=69.3
Q ss_pred cCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccchh
Q 024413 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (268)
Q Consensus 67 ~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 146 (268)
.+...++|+|.+|+|||||++.|.+...... .. +....... + .
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~-----------~~--T~~~~~~~------------~--------~---- 362 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVTT-----------IP--TVGFNVET------------V--------T---- 362 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCCC-----------CC--CSSEEEEE------------E--------E----
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCCc-----------CC--ccceeEEE------------E--------E----
Confidence 4457899999999999999999998653210 00 00000000 0 0
Q ss_pred hhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHH
Q 024413 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (268)
Q Consensus 147 ~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~ 226 (268)
..+..+.|+||||+..+... ...+ -..+|++++|+|+.... .+..........
T Consensus 363 ----------------~~~~~~~l~Dt~G~~~~~~~------~~~~--~~~ad~~i~V~D~~~~~---s~~~~~~~~~~~ 415 (497)
T 3lvq_E 363 ----------------YKNVKFNVWDVGGQDKIRPL------WRHY--YTGTQGLIFVVDCADRD---RIDEARQELHRI 415 (497)
T ss_dssp ----------------SSSCEEEEEEECCCGGGSGG------GGGG--GTTCCEEEEEEETTCGG---GHHHHHHHHHHH
T ss_pred ----------------eCCEEEEEEECCCcHHHHHH------HHHH--hccCCEEEEEEECcchh---HHHHHHHHHHHH
Confidence 12457999999998765321 1111 24579999999996532 211111111122
Q ss_pred HH---hhCCCceeeecCCCcCCh
Q 024413 227 LY---KTRLPLVLAFNKTDVAQH 246 (268)
Q Consensus 227 l~---~~~~p~ilV~NK~Dl~~~ 246 (268)
+. ..++|+|+|+||+|+.+.
T Consensus 416 ~~~~~~~~~p~ilv~NK~Dl~~~ 438 (497)
T 3lvq_E 416 INDREMRDAIILIFANKQDLPDA 438 (497)
T ss_dssp HTSGGGTTCEEEEEEECCSSSSC
T ss_pred hhhhhcCCCcEEEEEECCCCCcC
Confidence 22 147899999999999754
No 249
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.19 E-value=5.6e-11 Score=114.26 Aligned_cols=80 Identities=15% Similarity=0.124 Sum_probs=48.4
Q ss_pred CEEEEeCCCCcchhhhhh-----HHHHHHHHHhccCCcEEEEEEcCCCc-CCchhhHHHHHHHHHHHHhhCCCceeeecC
Q 024413 167 DYVLVDTPGQIEIFTWSA-----SGAIITEAFASTFPTVVTYVVDTPRS-ANPMTFMSNMLYACSILYKTRLPLVLAFNK 240 (268)
Q Consensus 167 ~illlDePG~~~~~~~~~-----~~~~i~~~~~~~~~d~vv~vvD~~~~-~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK 240 (268)
.+.|+||||+.+...... .......++ ..+|++++|+|+... ....+ ...+..+...+.|+++|+||
T Consensus 155 ~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l--~~aD~il~VvDa~~~~~~~~~-----~~~l~~l~~~~~pvilVlNK 227 (550)
T 2qpt_A 155 SISIIDTPGILSGAKQRVSRGYDFPAVLRWFA--ERVDLIILLFDAHKLEISDEF-----SEAIGALRGHEDKIRVVLNK 227 (550)
T ss_dssp HCEEEECCCBCC-------CCSCHHHHHHHHH--HHCSEEEEEEETTSCCCCHHH-----HHHHHHTTTCGGGEEEEEEC
T ss_pred CEEEEECcCCCCcchhHHHHHhhHHHHHHHHH--HhCCEEEEEEeCCcCCCCHHH-----HHHHHHHHhcCCCEEEEEEC
Confidence 589999999976311000 111222222 347999999999762 33222 11134445567899999999
Q ss_pred CCcCChhhhhhhh
Q 024413 241 TDVAQHEFALEVQ 253 (268)
Q Consensus 241 ~Dl~~~~~~~~~~ 253 (268)
+|+++++++.+..
T Consensus 228 ~Dl~~~~el~~~~ 240 (550)
T 2qpt_A 228 ADMVETQQLMRVY 240 (550)
T ss_dssp GGGSCHHHHHHHH
T ss_pred CCccCHHHHHHHH
Confidence 9999877665443
No 250
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.18 E-value=8.5e-11 Score=105.75 Aligned_cols=87 Identities=17% Similarity=0.275 Sum_probs=52.2
Q ss_pred CCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCc-hhhHHHHHHHHHHHH--hhCCCceeeecCCC
Q 024413 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANP-MTFMSNMLYACSILY--KTRLPLVLAFNKTD 242 (268)
Q Consensus 166 ~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~-~~~~~~~~~~~~~l~--~~~~p~ilV~NK~D 242 (268)
-++.|||||||.++.... + ....++ ..++++++|+|....+.. ..++...+ ..+. ..+.|+++|+||+|
T Consensus 46 v~LqIWDTAGQErf~~~~-l--~~~~yy--r~a~~~IlV~Ditd~~~~~~~~l~~~l---~~~~~~~~~ipillvgNK~D 117 (331)
T 3r7w_B 46 IDLAVMELPGQLNYFEPS-Y--DSERLF--KSVGALVYVIDSQDEYINAITNLAMII---EYAYKVNPSINIEVLIHKVD 117 (331)
T ss_dssp SCEEEEECCSCSSSCCCS-H--HHHHHH--TTCSEEEEECCCSSCTTHHHHHHHHHH---HHHHHHCTTCEEEEECCCCC
T ss_pred EEEEEEECCCchhccchh-h--hhhhhc--cCCCEEEEEEECCchHHHHHHHHHHHH---HHHhhcCCCCcEEEEEECcc
Confidence 479999999998873111 1 122334 357999999999764222 12332211 1111 24789999999999
Q ss_pred cCChh-------hhhhhhhhcccce
Q 024413 243 VAQHE-------FALEVQFFSMLDY 260 (268)
Q Consensus 243 l~~~~-------~~~~~~~~~~~~~ 260 (268)
+.+++ ++.....+.+++.
T Consensus 118 L~~~~~R~~~~R~V~~~~~~~la~~ 142 (331)
T 3r7w_B 118 GLSEDFKVDAQRDIMQRTGEELLEL 142 (331)
T ss_dssp SSCSHHHHHHHHHHHHHHHHTTSSS
T ss_pred cCchhhhhhHHHHhhHHHHHHHHhh
Confidence 98753 3444444555553
No 251
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.18 E-value=5e-11 Score=110.05 Aligned_cols=68 Identities=19% Similarity=0.199 Sum_probs=46.8
Q ss_pred CCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCC-ceeeecCCCc
Q 024413 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLP-LVLAFNKTDV 243 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p-~ilV~NK~Dl 243 (268)
+..+.|+|+||+.++.. ..... ...+|++++|+|+..+..++.. ..+..+...++| +++|+||+|+
T Consensus 65 ~~~~~iiDtpG~~~f~~------~~~~~--~~~aD~~ilVvda~~g~~~qt~-----e~l~~~~~~~vp~iivviNK~Dl 131 (397)
T 1d2e_A 65 ARHYAHTDCPGHADYVK------NMITG--TAPLDGCILVVAANDGPMPQTR-----EHLLLARQIGVEHVVVYVNKADA 131 (397)
T ss_dssp SCEEEEEECSSHHHHHH------HHHHT--SSCCSEEEEEEETTTCSCHHHH-----HHHHHHHHTTCCCEEEEEECGGG
T ss_pred CeEEEEEECCChHHHHH------HHHhh--HhhCCEEEEEEECCCCCCHHHH-----HHHHHHHHcCCCeEEEEEECccc
Confidence 45799999999866421 22222 2458999999999877654432 113444556889 5799999999
Q ss_pred CC
Q 024413 244 AQ 245 (268)
Q Consensus 244 ~~ 245 (268)
.+
T Consensus 132 ~~ 133 (397)
T 1d2e_A 132 VQ 133 (397)
T ss_dssp CS
T ss_pred CC
Confidence 85
No 252
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.17 E-value=6.3e-11 Score=113.38 Aligned_cols=70 Identities=19% Similarity=0.181 Sum_probs=49.2
Q ss_pred CCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeecCCCcC
Q 024413 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA 244 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK~Dl~ 244 (268)
+..+.|+||||+.++.. ....++ ..+|.+|+|+|+..+..... ...+..+...++|+++|+||+|+.
T Consensus 81 ~~~i~liDTPG~~df~~------~~~~~l--~~aD~~IlVvDa~~g~~~~t-----~~~~~~~~~~~ipiivviNK~Dl~ 147 (529)
T 2h5e_A 81 DCLVNLLDTPGHEDFSE------DTYRTL--TAVDCCLMVIDAAKGVEDRT-----RKLMEVTRLRDTPILTFMNKLDRD 147 (529)
T ss_dssp TEEEEEECCCCSTTCCH------HHHHGG--GGCSEEEEEEETTTCSCHHH-----HHHHHHHTTTTCCEEEEEECTTSC
T ss_pred CeEEEEEECCCChhHHH------HHHHHH--HHCCEEEEEEeCCccchHHH-----HHHHHHHHHcCCCEEEEEcCcCCc
Confidence 45799999999987632 222332 45799999999987654432 112344455689999999999997
Q ss_pred Chh
Q 024413 245 QHE 247 (268)
Q Consensus 245 ~~~ 247 (268)
..+
T Consensus 148 ~~~ 150 (529)
T 2h5e_A 148 IRD 150 (529)
T ss_dssp CSC
T ss_pred ccc
Confidence 643
No 253
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.17 E-value=1.6e-10 Score=102.75 Aligned_cols=151 Identities=15% Similarity=0.064 Sum_probs=84.2
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCccc-EEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccc
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNI-RGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTS 144 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 144 (268)
..+|.+++++|+|||||||++..|++.+.++.| .+.+.+.|+... ........+.+.+++.....
T Consensus 102 ~~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~----------~a~eqL~~~~~~~gl~~~~~---- 167 (296)
T 2px0_A 102 PIHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRI----------AAVEQLKTYAELLQAPLEVC---- 167 (296)
T ss_dssp CCCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSST----------THHHHHHHHHTTTTCCCCBC----
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccc----------hHHHHHHHHHHhcCCCeEec----
Confidence 346889999999999999999999999987656 777776665210 00111122223344432111
Q ss_pred hhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHH
Q 024413 145 LNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC 224 (268)
Q Consensus 145 ~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~ 224 (268)
.+. ..-+.+++ .+.+++++|+||||.... .......+.+.+.....+.+++|+|+.... .+ .. ...
T Consensus 168 ---~~~-~~l~~al~--~~~~~dlvIiDT~G~~~~--~~~~~~el~~~l~~~~~~~~~lVl~at~~~--~~-~~---~~~ 233 (296)
T 2px0_A 168 ---YTK-EEFQQAKE--LFSEYDHVFVDTAGRNFK--DPQYIDELKETIPFESSIQSFLVLSATAKY--ED-MK---HIV 233 (296)
T ss_dssp ---SSH-HHHHHHHH--HGGGSSEEEEECCCCCTT--SHHHHHHHHHHSCCCTTEEEEEEEETTBCH--HH-HH---HHT
T ss_pred ---CCH-HHHHHHHH--HhcCCCEEEEeCCCCChh--hHHHHHHHHHHHhhcCCCeEEEEEECCCCH--HH-HH---HHH
Confidence 122 12233444 348999999999998542 112222233333222357788899886432 11 10 001
Q ss_pred HHHHhhCCCceeeecCCCcCC
Q 024413 225 SILYKTRLPLVLAFNKTDVAQ 245 (268)
Q Consensus 225 ~~l~~~~~p~ilV~NK~Dl~~ 245 (268)
..+...+ ..-+|+||.|...
T Consensus 234 ~~~~~l~-~~giVltk~D~~~ 253 (296)
T 2px0_A 234 KRFSSVP-VNQYIFTKIDETT 253 (296)
T ss_dssp TTTSSSC-CCEEEEECTTTCS
T ss_pred HHHhcCC-CCEEEEeCCCccc
Confidence 1111112 2456789999764
No 254
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.17 E-value=1e-10 Score=115.71 Aligned_cols=79 Identities=11% Similarity=0.054 Sum_probs=54.2
Q ss_pred CCCEEEEeCCCCcchh----hh---hhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceee
Q 024413 165 HLDYVLVDTPGQIEIF----TW---SASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLA 237 (268)
Q Consensus 165 ~~~illlDePG~~~~~----~~---~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV 237 (268)
.+++.|+||||+.... +. ......+.+++ ...+|+|++|+|+...+...+.. ..+..+...+.|+|+|
T Consensus 149 ~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi-~~~aDlIL~VVDAs~~~~~~d~l----~ll~~L~~~g~pvIlV 223 (772)
T 3zvr_A 149 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFV-TKENCLILAVSPANSDLANSDAL----KIAKEVDPQGQRTIGV 223 (772)
T ss_dssp CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHH-TSTTEEEEEEEETTSCSSSCHHH----HHHHHHCTTCSSEEEE
T ss_pred CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHH-hcCCcEEEEEEcCCCCcchhHHH----HHHHHHHhcCCCEEEE
Confidence 4679999999997621 01 22333344444 36689999999998876665531 1135555668999999
Q ss_pred ecCCCcCChhh
Q 024413 238 FNKTDVAQHEF 248 (268)
Q Consensus 238 ~NK~Dl~~~~~ 248 (268)
+||+|++++..
T Consensus 224 lNKiDlv~~~~ 234 (772)
T 3zvr_A 224 ITKLDLMDEGT 234 (772)
T ss_dssp EECTTSSCTTC
T ss_pred EeCcccCCcch
Confidence 99999987643
No 255
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.17 E-value=7.1e-11 Score=115.92 Aligned_cols=132 Identities=20% Similarity=0.162 Sum_probs=79.3
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccC--cccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCccc
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQS--RNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILT 143 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~--~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 143 (268)
.+++..++|+|++|+|||||+++|++...+ ..|.+ ..+... .+. ... +.-....+.......
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~-~d~---------~~~----e~~~giti~~~~~~~- 69 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTT-TDY---------TPE----AKLHRTTVRTGVAPL- 69 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCS-SCC---------SHH----HHHTTSCCSCEEEEE-
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCccc-ccC---------CHH----HHhcCCeEEecceEE-
Confidence 567889999999999999999999987654 33433 111111 000 000 000001111000000
Q ss_pred chhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHH
Q 024413 144 SLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYA 223 (268)
Q Consensus 144 ~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~ 223 (268)
...+..+.|+||||+.++.. ....+++ .+|.+++|+|+..+...... ..
T Consensus 70 ------------------~~~~~~~nliDTpG~~~f~~------~~~~~l~--~ad~~ilVvD~~~g~~~qt~-----~~ 118 (665)
T 2dy1_A 70 ------------------LFRGHRVFLLDAPGYGDFVG------EIRGALE--AADAALVAVSAEAGVQVGTE-----RA 118 (665)
T ss_dssp ------------------EETTEEEEEEECCCSGGGHH------HHHHHHH--HCSEEEEEEETTTCSCHHHH-----HH
T ss_pred ------------------eeCCEEEEEEeCCCccchHH------HHHHHHh--hcCcEEEEEcCCcccchhHH-----HH
Confidence 01245689999999987632 3333332 36999999999777665432 12
Q ss_pred HHHHHhhCCCceeeecCCCcC
Q 024413 224 CSILYKTRLPLVLAFNKTDVA 244 (268)
Q Consensus 224 ~~~l~~~~~p~ilV~NK~Dl~ 244 (268)
+..+...++|+++|+||+|+.
T Consensus 119 ~~~~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 119 WTVAERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHHHHHTTCCEEEEEECGGGC
T ss_pred HHHHHHccCCEEEEecCCchh
Confidence 345556689999999999997
No 256
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.17 E-value=8.1e-12 Score=105.26 Aligned_cols=69 Identities=17% Similarity=0.203 Sum_probs=42.2
Q ss_pred CCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHh--hCCCceeeecCCCc
Q 024413 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK--TRLPLVLAFNKTDV 243 (268)
Q Consensus 166 ~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~--~~~p~ilV~NK~Dl 243 (268)
..+.|+|+||+..+.. ....++ ..+|++++|+|.......... ......+.. .++|+++|+||+|+
T Consensus 64 ~~~~i~Dt~G~~~~~~------~~~~~~--~~~~~~i~v~d~~~~~s~~~~----~~~~~~~~~~~~~~p~ilv~nK~Dl 131 (221)
T 3gj0_A 64 IKFNVWDTAGQEKFGG------LRDGYY--IQAQCAIIMFDVTSRVTYKNV----PNWHRDLVRVCENIPIVLCGNKVDI 131 (221)
T ss_dssp EEEEEEEECSGGGTSC------CCHHHH--TTCCEEEEEEETTCHHHHHTH----HHHHHHHHHHSTTCCEEEEEECTTS
T ss_pred EEEEEEeCCChHHHhH------HHHHHH--hcCCEEEEEEECCCHHHHHHH----HHHHHHHHHhCCCCCEEEEEECCcc
Confidence 3689999999866532 111222 357999999999653221111 111122222 37899999999999
Q ss_pred CCh
Q 024413 244 AQH 246 (268)
Q Consensus 244 ~~~ 246 (268)
.+.
T Consensus 132 ~~~ 134 (221)
T 3gj0_A 132 KDR 134 (221)
T ss_dssp SSC
T ss_pred ccc
Confidence 764
No 257
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.17 E-value=1.1e-10 Score=110.48 Aligned_cols=73 Identities=16% Similarity=0.208 Sum_probs=44.3
Q ss_pred CCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchh--hHHHHHHHHHHHHhhC-CCceeeecCC
Q 024413 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMT--FMSNMLYACSILYKTR-LPLVLAFNKT 241 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~--~~~~~~~~~~~l~~~~-~p~ilV~NK~ 241 (268)
+..+.|+||||+.++.. .....+ ..+|++++|+|+..+..... ...+.......+...+ .|+|+|+||+
T Consensus 110 ~~~~~iiDTPG~~~f~~------~~~~~~--~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~ 181 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVP------NAIMGI--SQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKM 181 (483)
T ss_dssp SCEEEEECCCCCGGGHH------HHHHHH--TTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECG
T ss_pred CceEEEEECCCcHHHHH------HHHHhh--hhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECc
Confidence 45799999999977522 333333 45899999999977522111 1111112223334445 4599999999
Q ss_pred CcCC
Q 024413 242 DVAQ 245 (268)
Q Consensus 242 Dl~~ 245 (268)
|+.+
T Consensus 182 Dl~~ 185 (483)
T 3p26_A 182 DNVD 185 (483)
T ss_dssp GGGT
T ss_pred Cccc
Confidence 9987
No 258
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.16 E-value=2e-10 Score=98.12 Aligned_cols=41 Identities=20% Similarity=0.293 Sum_probs=34.2
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHH--hcccCcccEEEEeccc
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLV--CHTQSRNIRGYVMNLD 106 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~--g~~~~~~g~i~i~~~~ 106 (268)
+++|++++|+||||||||||+++|+ |...+..+.+++.+..
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~ 69 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE 69 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccC
Confidence 7899999999999999999999999 6645666777776543
No 259
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.16 E-value=3e-10 Score=102.63 Aligned_cols=63 Identities=14% Similarity=0.142 Sum_probs=40.9
Q ss_pred chhhhcHHHHH------HHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEc
Q 024413 144 SLNLFTTKFDE------VISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVD 206 (268)
Q Consensus 144 ~~~~lS~G~~q------r~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD 206 (268)
.+..|||||+| |+++|++++.+|+++|+|||+...+.........+...+......+++..||
T Consensus 245 ~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~ 313 (339)
T 3qkt_A 245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHD 313 (339)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESC
T ss_pred ChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECh
Confidence 47899999999 5677788888999999999987543222222222233333333455555555
No 260
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.16 E-value=6.7e-11 Score=119.37 Aligned_cols=126 Identities=15% Similarity=0.176 Sum_probs=70.0
Q ss_pred cccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccc
Q 024413 65 FKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTS 144 (268)
Q Consensus 65 ~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 144 (268)
.+.+|++++|+|||||||||||+++++.......-.++.... ..++.... ++..+++..+.. ..
T Consensus 669 ~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~---~~i~~~d~-----------i~~~ig~~d~l~--~~ 732 (918)
T 3thx_B 669 SEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEE---ATIGIVDG-----------IFTRMGAADNIY--KG 732 (918)
T ss_dssp CTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSE---EEEECCSE-----------EEEEC-----------
T ss_pred cCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchh---hhhhHHHH-----------HHHhCChHHHHH--Hh
Confidence 367899999999999999999999976432110000000000 00000000 011112221111 12
Q ss_pred hhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhh-hHHHHHHHHHhc-cCCcEEEEEEcC
Q 024413 145 LNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWS-ASGAIITEAFAS-TFPTVVTYVVDT 207 (268)
Q Consensus 145 ~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~-~~~~~i~~~~~~-~~~d~vv~vvD~ 207 (268)
++.||+||+|++.++++ +.+|+++|+||||..-..... .....+.+++.. ....+++..||.
T Consensus 733 ~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~ 796 (918)
T 3thx_B 733 RSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYP 796 (918)
T ss_dssp -CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCG
T ss_pred HHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcH
Confidence 67899999999999998 789999999999885432222 233355555543 344555555554
No 261
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.16 E-value=5.6e-11 Score=113.73 Aligned_cols=69 Identities=16% Similarity=0.143 Sum_probs=44.2
Q ss_pred CCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHh--hCCCceeeecCCC
Q 024413 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK--TRLPLVLAFNKTD 242 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~--~~~p~ilV~NK~D 242 (268)
+..+.|+|+||+..+.... ...+ ..+|++++|+|+... +....+ ...+.. .+.|+|+|+||+|
T Consensus 97 ~~~~~i~Dt~G~e~~~~~~------~~~l--~~~d~ii~V~D~s~~-~~~~~~------~~~l~~~~~~~pvilV~NK~D 161 (535)
T 3dpu_A 97 ECLFHFWDFGGQEIMHASH------QFFM--TRSSVYMLLLDSRTD-SNKHYW------LRHIEKYGGKSPVIVVMNKID 161 (535)
T ss_dssp TCEEEEECCCSCCTTTTTC------HHHH--HSSEEEEEEECGGGG-GGHHHH------HHHHHHHSSSCCEEEEECCTT
T ss_pred eEEEEEEECCcHHHHHHHH------HHHc--cCCcEEEEEEeCCCc-hhHHHH------HHHHHHhCCCCCEEEEEECCC
Confidence 4579999999987653311 1112 237999999999653 111111 233333 3589999999999
Q ss_pred cCChhh
Q 024413 243 VAQHEF 248 (268)
Q Consensus 243 l~~~~~ 248 (268)
+...++
T Consensus 162 l~~~~~ 167 (535)
T 3dpu_A 162 ENPSYN 167 (535)
T ss_dssp TCTTCC
T ss_pred cccccc
Confidence 976543
No 262
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.16 E-value=8.8e-11 Score=115.76 Aligned_cols=69 Identities=17% Similarity=0.216 Sum_probs=49.8
Q ss_pred CCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeecCCCcC
Q 024413 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA 244 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK~Dl~ 244 (268)
+..+.|+||||+.++.. ....+++ .+|.+++|+|+.......+. ..+..+...++|+++|+||+|+.
T Consensus 74 ~~~i~liDTPG~~df~~------~~~~~l~--~aD~~llVvDa~~g~~~~~~-----~~~~~~~~~~~p~ilviNK~Dl~ 140 (693)
T 2xex_A 74 GHRVNIIDTPGHVDFTV------EVERSLR--VLDGAVTVLDAQSGVEPQTE-----TVWRQATTYGVPRIVFVNKMDKL 140 (693)
T ss_dssp TEEEEEECCCCCSSCCH------HHHHHHH--HCSEEEEEEETTTBSCHHHH-----HHHHHHHHTTCCEEEEEECTTST
T ss_pred CeeEEEEECcCCcchHH------HHHHHHH--HCCEEEEEECCCCCCcHHHH-----HHHHHHHHcCCCEEEEEECCCcc
Confidence 45799999999987633 2333332 27999999999877665442 12344556789999999999998
Q ss_pred Ch
Q 024413 245 QH 246 (268)
Q Consensus 245 ~~ 246 (268)
..
T Consensus 141 ~~ 142 (693)
T 2xex_A 141 GA 142 (693)
T ss_dssp TC
T ss_pred cc
Confidence 64
No 263
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.15 E-value=8.7e-11 Score=104.64 Aligned_cols=35 Identities=23% Similarity=0.298 Sum_probs=20.6
Q ss_pred eEEEEEecCCCCHHHHHHHHHhc-ccCcccEEEEecc
Q 024413 70 VIIIVVGMAGSGKTTFMHRLVCH-TQSRNIRGYVMNL 105 (268)
Q Consensus 70 ~~v~iiG~~GsGKSTLl~~l~g~-~~~~~g~i~i~~~ 105 (268)
..++|+|+||||||||+++|+|. ..+++| +.+.+.
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~ 54 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLTDLYPERV-ISGAAE 54 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC---------------
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccCCCC-cccCCc
Confidence 55699999999999999999997 777777 655443
No 264
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.15 E-value=1.4e-10 Score=114.45 Aligned_cols=72 Identities=13% Similarity=0.124 Sum_probs=47.4
Q ss_pred CCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeecCCCcCC
Q 024413 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQ 245 (268)
Q Consensus 166 ~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK~Dl~~ 245 (268)
.++.|+||||+.+... .......++ ..+|++++|+|+....+..+.. .....+...+.|+++|+||+|+..
T Consensus 174 ~~l~LiDTPGl~~~~~---~~~~~~~~i--~~aD~vL~Vvda~~~~s~~e~~----~l~~~l~~~~~~iiiVlNK~Dl~~ 244 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEA---RNELSLGYV--NNCHAILFVMRASQPCTLGERR----YLENYIKGRGLTVFFLVNAWDQVR 244 (695)
T ss_dssp TTEEEEECCCHHHHHT---CHHHHTHHH--HSSSEEEEEEETTSTTCHHHHH----HHHHHTTTSCCCEEEEEECGGGGG
T ss_pred CCeEEEECCCCCchhh---HHHHHHHHH--HhCCEEEEEEeCCCccchhHHH----HHHHHHHhhCCCEEEEEECccccc
Confidence 4799999999876421 122333334 3479999999997766554321 001223345789999999999975
Q ss_pred h
Q 024413 246 H 246 (268)
Q Consensus 246 ~ 246 (268)
.
T Consensus 245 ~ 245 (695)
T 2j69_A 245 E 245 (695)
T ss_dssp G
T ss_pred c
Confidence 4
No 265
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.15 E-value=6e-11 Score=112.56 Aligned_cols=69 Identities=23% Similarity=0.313 Sum_probs=48.1
Q ss_pred CCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeecCCCcC
Q 024413 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA 244 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK~Dl~ 244 (268)
+..+.||||||+.++.... .. ....+|++++|+|+..+..++... .+..+...++|+++|+||+|+.
T Consensus 50 ~~~i~~iDTPGhe~f~~~~------~~--~~~~aD~aILVVda~~g~~~qT~e-----~l~~~~~~~vPiIVviNKiDl~ 116 (501)
T 1zo1_I 50 NGMITFLDTPGHAAFTSMR------AR--GAQATDIVVLVVAADDGVMPQTIE-----AIQHAKAAQVPVVVAVNKIDKP 116 (501)
T ss_dssp SSCCCEECCCTTTCCTTSB------CS--SSBSCSSEEEEEETTTBSCTTTHH-----HHHHHHHTTCCEEEEEECSSSS
T ss_pred CEEEEEEECCCcHHHHHHH------HH--HHhhCCEEEEEeecccCccHHHHH-----HHHHHHhcCceEEEEEEecccc
Confidence 4478999999997763311 00 123479999999998876665422 1244456789999999999997
Q ss_pred Ch
Q 024413 245 QH 246 (268)
Q Consensus 245 ~~ 246 (268)
..
T Consensus 117 ~~ 118 (501)
T 1zo1_I 117 EA 118 (501)
T ss_dssp TT
T ss_pred cc
Confidence 53
No 266
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.15 E-value=5e-11 Score=110.85 Aligned_cols=48 Identities=10% Similarity=0.212 Sum_probs=32.3
Q ss_pred EEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeecCCCcCChhhhhhhh
Q 024413 200 VVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEVQ 253 (268)
Q Consensus 200 ~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~ 253 (268)
+++|++|+.+++...+.. .+..+. ...|+|+|+||+|.+++++...+.
T Consensus 151 ~v~fI~d~~~~l~~~Die-----ilk~L~-~~~~vI~Vi~KtD~Lt~~E~~~l~ 198 (427)
T 2qag_B 151 CLYFIAPTGHSLKSLDLV-----TMKKLD-SKVNIIPIIAKADAISKSELTKFK 198 (427)
T ss_dssp EEEEECCCC---CHHHHH-----HHHHTC-SCSEEEEEESCGGGSCHHHHHHHH
T ss_pred EEEEEeCCCCCCCHHHHH-----HHHHHh-hCCCEEEEEcchhccchHHHHHHH
Confidence 577888998887777621 123343 578999999999999887665443
No 267
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.14 E-value=1.5e-10 Score=117.04 Aligned_cols=114 Identities=17% Similarity=0.113 Sum_probs=64.1
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHH--------HhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCC
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRL--------VCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGP 137 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l--------~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 137 (268)
..+|++++|+|||||||||||+++ .|...|..+.. +. ... ... ..+++..
T Consensus 659 ~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-~~----~~d--~i~---------------~~ig~~d 716 (934)
T 3thx_A 659 KDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-VS----IVD--CIL---------------ARVGAGD 716 (934)
T ss_dssp TTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE-EE----CCS--EEE---------------EECC---
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc-ch----HHH--HHH---------------HhcCchh
Confidence 567899999999999999999999 66555533221 10 000 000 1111111
Q ss_pred CCCcccchhhhcHHHHHHHHHHHHH--hcCCCEEEEeCCCCcch-hhhhhHHHHHHHHHhcc-CCcEEEEEEc
Q 024413 138 NGGILTSLNLFTTKFDEVISLIERR--ADHLDYVLVDTPGQIEI-FTWSASGAIITEAFAST-FPTVVTYVVD 206 (268)
Q Consensus 138 ~~~~~~~~~~lS~G~~qr~~ia~al--~~~~~illlDePG~~~~-~~~~~~~~~i~~~~~~~-~~d~vv~vvD 206 (268)
.. ...+|+++.++..+++++ +.+|+++|+||||..-. .........+.+++... ...+++..||
T Consensus 717 ~l-----~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~ 784 (934)
T 3thx_A 717 SQ-----LKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHF 784 (934)
T ss_dssp -----------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESC
T ss_pred hH-----HHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCc
Confidence 11 234555555555555555 88999999999988643 22222324555665543 4455555555
No 268
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.14 E-value=1.5e-11 Score=117.60 Aligned_cols=69 Identities=25% Similarity=0.317 Sum_probs=48.0
Q ss_pred CCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeecCCCcC
Q 024413 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA 244 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK~Dl~ 244 (268)
+..+.||||||+.++..... .. ...+|++++|+|+..+..+.... .+..+...++|+++|+||+|+.
T Consensus 51 g~~i~~iDTPGhe~f~~~~~------~~--~~~aD~vILVVDa~dg~~~qt~e-----~l~~~~~~~vPiIVViNKiDl~ 117 (537)
T 3izy_P 51 GEKITFLDTPGHAAFSAMRA------RG--TQVTDIVILVVAADDGVMKQTVE-----SIQHAKDAHVPIVLAINKCDKA 117 (537)
T ss_dssp SSCCBCEECSSSCCTTTSBB------SS--SBSBSSCEEECBSSSCCCHHHHH-----HHHHHHTTTCCEEECCBSGGGT
T ss_pred CCEEEEEECCChHHHHHHHH------HH--HccCCEEEEEEECCCCccHHHHH-----HHHHHHHcCCcEEEEEeccccc
Confidence 34689999999877633110 11 13479999999998876654421 2345556789999999999997
Q ss_pred Ch
Q 024413 245 QH 246 (268)
Q Consensus 245 ~~ 246 (268)
..
T Consensus 118 ~~ 119 (537)
T 3izy_P 118 EA 119 (537)
T ss_dssp TT
T ss_pred cc
Confidence 53
No 269
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.14 E-value=3.2e-10 Score=100.11 Aligned_cols=107 Identities=15% Similarity=0.160 Sum_probs=63.7
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCccc-EEEEecccCCCC-----------Ccccc--cccchh-----h-HHH
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNI-RGYVMNLDPAVM-----------TLPFA--ANIDIR-----D-TIR 125 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g-~i~i~~~~~~~~-----------~~~~~--~~~~~~-----~-~~~ 125 (268)
+++|++++|+|+||+|||||++.|++...+..| .+.+.+...... ..+.. +++... + ...
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 111 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKREIIENGKFDQW 111 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTCCGGGCHHHHHHHHHHTHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCCChhhccccccCCCCHHHHHHH
Confidence 789999999999999999999999999988866 665544332110 00000 000000 0 001
Q ss_pred HHHHHHHcCCCCCCCcccchhhhcHHH-HHHHHHHHHHhcCCCEEEEeCCCCc
Q 024413 126 YKEVMKQFNLGPNGGILTSLNLFTTKF-DEVISLIERRADHLDYVLVDTPGQI 177 (268)
Q Consensus 126 ~~~~l~~~~l~~~~~~~~~~~~lS~G~-~qr~~ia~al~~~~~illlDePG~~ 177 (268)
+.++++...+. ....+..+|.++ +|++. ++++..+|+++|+|||+..
T Consensus 112 ~~~~l~~~~l~----i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~ 159 (296)
T 1cr0_A 112 FDELFGNDTFH----LYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIV 159 (296)
T ss_dssp HHHHHSSSCEE----EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC--
T ss_pred HHHHhccCCEE----EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCcccc
Confidence 12222211221 111124467777 56666 8889999999999999883
No 270
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.14 E-value=1.9e-10 Score=105.40 Aligned_cols=69 Identities=12% Similarity=0.142 Sum_probs=46.9
Q ss_pred CCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCc-eeeec-CCC
Q 024413 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPL-VLAFN-KTD 242 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~-ilV~N-K~D 242 (268)
+..+.|+||||+.++.. .+...+ ..+|++++|+| ..+..++.. ..+..+...++|. ++|+| |+|
T Consensus 59 ~~~i~iiDtPGh~~f~~------~~~~~~--~~aD~ailVvd-~~g~~~qt~-----e~~~~~~~~~i~~~ivvvNNK~D 124 (370)
T 2elf_A 59 GRNMVFVDAHSYPKTLK------SLITAL--NISDIAVLCIP-PQGLDAHTG-----ECIIALDLLGFKHGIIALTRSDS 124 (370)
T ss_dssp SSEEEEEECTTTTTCHH------HHHHHH--HTCSEEEEEEC-TTCCCHHHH-----HHHHHHHHTTCCEEEEEECCGGG
T ss_pred CeEEEEEECCChHHHHH------HHHHHH--HHCCEEEEEEc-CCCCcHHHH-----HHHHHHHHcCCCeEEEEEEeccC
Confidence 44699999999987632 233333 45799999999 666554431 1123445667898 99999 999
Q ss_pred cCChhh
Q 024413 243 VAQHEF 248 (268)
Q Consensus 243 l~~~~~ 248 (268)
+ +++.
T Consensus 125 l-~~~~ 129 (370)
T 2elf_A 125 T-HMHA 129 (370)
T ss_dssp S-CHHH
T ss_pred C-CHHH
Confidence 9 6543
No 271
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.13 E-value=1.1e-10 Score=113.06 Aligned_cols=68 Identities=28% Similarity=0.357 Sum_probs=49.5
Q ss_pred CCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeecCCCcC
Q 024413 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA 244 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK~Dl~ 244 (268)
.+.+.||||||+.++..... . ....+|++++|+|+..++.++++. .+..+...++|+++|+||+|+.
T Consensus 69 ~~~i~liDTPGhe~F~~~~~------r--~~~~aD~aILVvDa~~Gv~~qT~e-----~l~~l~~~~vPiIVViNKiDl~ 135 (594)
T 1g7s_A 69 LPGLFFIDTPGHEAFTTLRK------R--GGALADLAILIVDINEGFKPQTQE-----ALNILRMYRTPFVVAANKIDRI 135 (594)
T ss_dssp CCEEEEECCCTTSCCTTSBC------S--SSBSCSEEEEEEETTTCCCHHHHH-----HHHHHHHTTCCEEEEEECGGGS
T ss_pred cCCEEEEECCCcHHHHHHHH------H--HHhhCCEEEEEEECCCCccHhHHH-----HHHHHHHcCCeEEEEecccccc
Confidence 45699999999987743111 0 113479999999999887766532 2345566789999999999997
Q ss_pred C
Q 024413 245 Q 245 (268)
Q Consensus 245 ~ 245 (268)
.
T Consensus 136 ~ 136 (594)
T 1g7s_A 136 H 136 (594)
T ss_dssp T
T ss_pred c
Confidence 4
No 272
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=99.13 E-value=9.7e-10 Score=102.60 Aligned_cols=156 Identities=19% Similarity=0.155 Sum_probs=87.7
Q ss_pred CCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccchhh
Q 024413 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (268)
Q Consensus 68 ~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 147 (268)
++.+++++|++|+||||++..|+..+...+.++.+...|+... ........+.+..++.-..... .
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~----------aa~eqL~~~~~~~gvpv~~~~~----~ 164 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRP----------GAYHQLRQLLDRYHIEVFGNPQ----E 164 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSST----------HHHHHHHHHHGGGTCEEECCTT----C
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcch----------hHHHHHHHHHHhcCCcEEecCC----C
Confidence 5789999999999999999999998887777777766554211 0011111122233332110000 0
Q ss_pred hcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHH
Q 024413 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL 227 (268)
Q Consensus 148 lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l 227 (268)
-.....-+-++..+...+++++|+||||.... .......+....+...+|.+++|+|+..+.+.... ....
T Consensus 165 ~dp~~i~~~al~~a~~~~~DvVIIDTaGrl~~--d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~-------a~~f 235 (443)
T 3dm5_A 165 KDAIKLAKEGVDYFKSKGVDIIIVDTAGRHKE--DKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQ-------ALAF 235 (443)
T ss_dssp CCHHHHHHHHHHHHHHTTCSEEEEECCCCSSC--CHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHH-------HHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEECCCcccc--hHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHH-------HHHH
Confidence 00001111223344445799999999997653 22233333333333457999999999754221111 1223
Q ss_pred HhhCCCceeeecCCCcCCh
Q 024413 228 YKTRLPLVLAFNKTDVAQH 246 (268)
Q Consensus 228 ~~~~~p~ilV~NK~Dl~~~ 246 (268)
...-.+..+|+||+|....
T Consensus 236 ~~~~~i~gVIlTKlD~~~~ 254 (443)
T 3dm5_A 236 KEATPIGSIIVTKLDGSAK 254 (443)
T ss_dssp HHSCTTEEEEEECCSSCSS
T ss_pred HhhCCCeEEEEECCCCccc
Confidence 3333456689999998754
No 273
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.12 E-value=9.9e-11 Score=116.28 Aligned_cols=118 Identities=14% Similarity=0.066 Sum_probs=67.5
Q ss_pred CeEEEEEecCCCCHHHHHHHHHhccc-CcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccchhh
Q 024413 69 PVIIIVVGMAGSGKTTFMHRLVCHTQ-SRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (268)
Q Consensus 69 g~~v~iiG~~GsGKSTLl~~l~g~~~-~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 147 (268)
|++++|+||||||||||+++++|... ++.|.+. .... ..+.+...+ +..++...+. ...
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v-pa~~---~~i~~v~~i-----------~~~~~~~d~l-----~~g 635 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV-PAEE---AHLPLFDGI-----------YTRIGASDDL-----AGG 635 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB-SSSE---EEECCCSEE-----------EEECCC-----------C
T ss_pred CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee-ehhc---cceeeHHHh-----------hccCCHHHHH-----Hhc
Confidence 89999999999999999999999864 5555321 0000 000000000 0011111110 234
Q ss_pred hcHHHHHHHHHHHHH--hcCCCEEEEeCCCCcchhhhhhH-HHHHHHHHhccCCcEEEEEEc
Q 024413 148 FTTKFDEVISLIERR--ADHLDYVLVDTPGQIEIFTWSAS-GAIITEAFASTFPTVVTYVVD 206 (268)
Q Consensus 148 lS~G~~qr~~ia~al--~~~~~illlDePG~~~~~~~~~~-~~~i~~~~~~~~~d~vv~vvD 206 (268)
+|+|+++++.+++++ +.+|+++|+||||-.-..-+... ...+.+.+......+++..||
T Consensus 636 ~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~~g~~vl~~TH~ 697 (765)
T 1ewq_A 636 KSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHY 697 (765)
T ss_dssp CSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCC
T ss_pred ccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 799999999999999 99999999999964321111111 123444444433445554454
No 274
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.12 E-value=1.7e-10 Score=105.23 Aligned_cols=86 Identities=13% Similarity=0.120 Sum_probs=54.9
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCc-ccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccc
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSR-NIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTS 144 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~-~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 144 (268)
..++++++|+||||||||||+++|+|.+.++ ++.+.....+.... ......+ +... ..+
T Consensus 120 ~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~-~~~~~~~-v~q~--------~~~---------- 179 (356)
T 3jvv_A 120 DVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFV-HESKKCL-VNQR--------EVH---------- 179 (356)
T ss_dssp HCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSC-CCCSSSE-EEEE--------EBT----------
T ss_pred hCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhh-hhccccc-eeee--------eec----------
Confidence 4678899999999999999999999999887 56665444332111 1100000 0000 000
Q ss_pred hhhhcHHHHHHHHHHHHHhcCCCEEEEeCCC
Q 024413 145 LNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (268)
Q Consensus 145 ~~~lS~G~~qr~~ia~al~~~~~illlDePG 175 (268)
...++-. -+++++|..+|+++++|||.
T Consensus 180 ~~~~~~~----~~La~aL~~~PdvillDEp~ 206 (356)
T 3jvv_A 180 RDTLGFS----EALRSALREDPDIILVGEMR 206 (356)
T ss_dssp TTBSCHH----HHHHHHTTSCCSEEEESCCC
T ss_pred cccCCHH----HHHHHHhhhCcCEEecCCCC
Confidence 0111111 18999999999999999998
No 275
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.12 E-value=6.2e-12 Score=108.44 Aligned_cols=109 Identities=13% Similarity=0.021 Sum_probs=65.4
Q ss_pred ccccccCCeEEEEEecCCCCHHHHHHHHHhcccCc------ccEEEEecccCCCCCccccccc-------c-----hhhH
Q 024413 62 SINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSR------NIRGYVMNLDPAVMTLPFAANI-------D-----IRDT 123 (268)
Q Consensus 62 ~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~------~g~i~i~~~~~~~~~~~~~~~~-------~-----~~~~ 123 (268)
..+.+++|.+++|+||||||||||+++|+|.+... ....++.+.. ....++..++. . ..+.
T Consensus 18 isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 96 (245)
T 2jeo_A 18 LYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDR-FYKVLTAEQKAKALKGQYNFDHPDAFDN 96 (245)
T ss_dssp -----CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGG-GBCCCCHHHHHHHHTTCCCTTSGGGBCH
T ss_pred eeccCCCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCc-CccccCHhHhhhhhccCCCCCCcccccH
Confidence 34457899999999999999999999999975221 1233454443 22222221110 0 0112
Q ss_pred HHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 024413 124 IRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQ 176 (268)
Q Consensus 124 ~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~ 176 (268)
..+.+.++.+ ..... ..+..||+||+||+.+ ++++.+|+++|+|+|..
T Consensus 97 ~~~~~~L~~l--~~~~~--~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~ 144 (245)
T 2jeo_A 97 DLMHRTLKNI--VEGKT--VEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILV 144 (245)
T ss_dssp HHHHHHHHHH--HTTCC--EEECCEETTTTEECSS-CEEECCCSEEEEECTTT
T ss_pred HHHHHHHHHH--HCCCC--eecccccccccCccCc-eEEecCCCEEEEeCccc
Confidence 2334444433 11122 2377899999999877 57778899999999864
No 276
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.12 E-value=7.2e-11 Score=108.24 Aligned_cols=119 Identities=14% Similarity=0.222 Sum_probs=68.9
Q ss_pred eEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccchhhhc
Q 024413 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (268)
Q Consensus 70 ~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~lS 149 (268)
..|+|+|.|++|||||+|+|+|.... ..+.|+++.- ++.+...
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~~~-------------v~~~pftT~~------------------~~~g~~~------ 115 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTESE-------------AAEYEFTTLV------------------TVPGVIR------ 115 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBCCC-------------GGGTCSSCCC------------------EEEEEEE------
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCc-------------ccCCCCceee------------------eeeEEEE------
Confidence 47999999999999999999996432 2333443210 0001110
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhh-hHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHH-
Q 024413 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWS-ASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSIL- 227 (268)
Q Consensus 150 ~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~-~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l- 227 (268)
..+.++.|+|+||+.+..... .........+ ..+|++++|+|+.......+.....+ ...
T Consensus 116 -------------~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i--~~ad~il~vvD~~~p~~~~~~i~~EL---~~~~ 177 (376)
T 4a9a_A 116 -------------YKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVA--RTCNLLFIILDVNKPLHHKQIIEKEL---EGVG 177 (376)
T ss_dssp -------------ETTEEEEEEECGGGCCC-----CHHHHHHHHH--HHCSEEEEEEETTSHHHHHHHHHHHH---HHTT
T ss_pred -------------eCCcEEEEEeCCCccCCchhhhHHHHHHHHHH--HhcCccccccccCccHHHHHHHHHHH---HHhh
Confidence 235679999999997642221 1223333333 33799999999964322212111111 111
Q ss_pred -HhhCCCceeeecCCCc
Q 024413 228 -YKTRLPLVLAFNKTDV 243 (268)
Q Consensus 228 -~~~~~p~ilV~NK~Dl 243 (268)
....+|.++|+||+|.
T Consensus 178 ~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 178 IRLNKTPPDILIKKKEK 194 (376)
T ss_dssp EEETCCCCCEEEEECSS
T ss_pred HhhccCChhhhhhHhhh
Confidence 1235799999999996
No 277
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.11 E-value=2.4e-10 Score=106.14 Aligned_cols=127 Identities=19% Similarity=0.283 Sum_probs=71.2
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccch
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 145 (268)
++.+..++|+|+||||||||+++|++..+ .+.+.+.. +..+++ ....
T Consensus 154 lk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ft----Tl~p~~---------------------G~V~-- 200 (416)
T 1udx_A 154 LMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFT----TLSPNL---------------------GVVE-- 200 (416)
T ss_dssp ECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTC----SSCCEE---------------------EEEE--
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCcccc----eeccee---------------------eEEE--
Confidence 67788999999999999999999999743 12111110 001000 0000
Q ss_pred hhhcHHHHHHHHHHHHHhc-CCCEEEEeCCCCcchhhhh-hHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHH
Q 024413 146 NLFTTKFDEVISLIERRAD-HLDYVLVDTPGQIEIFTWS-ASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYA 223 (268)
Q Consensus 146 ~~lS~G~~qr~~ia~al~~-~~~illlDePG~~~~~~~~-~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~ 223 (268)
.. ...+.++|+||+.+..... .......+. ...++.+++++|.. ..+..........
T Consensus 201 -----------------~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~--~era~~lL~vvDls--~~~~~~ls~g~~e 259 (416)
T 1udx_A 201 -----------------VSEEERFTLADIPGIIEGASEGKGLGLEFLRH--IARTRVLLYVLDAA--DEPLKTLETLRKE 259 (416)
T ss_dssp -----------------CSSSCEEEEEECCCCCCCGGGSCCSCHHHHHH--HTSSSEEEEEEETT--SCHHHHHHHHHHH
T ss_pred -----------------ecCcceEEEEeccccccchhhhhhhhHHHHHH--HHHHHhhhEEeCCc--cCCHHHHHHHHHH
Confidence 11 2468999999986531111 011111122 24579999999996 2222211111111
Q ss_pred HHHHH--hhCCCceeeecCCCcCCh
Q 024413 224 CSILY--KTRLPLVLAFNKTDVAQH 246 (268)
Q Consensus 224 ~~~l~--~~~~p~ilV~NK~Dl~~~ 246 (268)
+..+. ....|.++|+||+|+...
T Consensus 260 l~~la~aL~~~P~ILVlNKlDl~~~ 284 (416)
T 1udx_A 260 VGAYDPALLRRPSLVALNKVDLLEE 284 (416)
T ss_dssp HHHHCHHHHHSCEEEEEECCTTSCH
T ss_pred HHHHhHHhhcCCEEEEEECCChhhH
Confidence 11111 236899999999999876
No 278
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.11 E-value=4.4e-10 Score=104.87 Aligned_cols=68 Identities=19% Similarity=0.237 Sum_probs=46.1
Q ss_pred CCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCC-CceeeecCCCc
Q 024413 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRL-PLVLAFNKTDV 243 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~-p~ilV~NK~Dl 243 (268)
+.++.|+||||+.++.. .....+ ..+|++++|+|+..+..++... .+..+...+. |+|+|+||+|+
T Consensus 103 ~~~~~iiDtpGh~~f~~------~~~~~~--~~aD~~ilVvDa~~g~~~qt~~-----~l~~~~~~~~~~iIvviNK~Dl 169 (434)
T 1zun_B 103 KRKFIIADTPGHEQYTR------NMATGA--STCDLAIILVDARYGVQTQTRR-----HSYIASLLGIKHIVVAINKMDL 169 (434)
T ss_dssp SEEEEEEECCCSGGGHH------HHHHHH--TTCSEEEEEEETTTCSCHHHHH-----HHHHHHHTTCCEEEEEEECTTT
T ss_pred CceEEEEECCChHHHHH------HHHHHH--hhCCEEEEEEECCCCCcHHHHH-----HHHHHHHcCCCeEEEEEEcCcC
Confidence 34689999999877522 233333 4589999999998776544311 1233334565 48999999999
Q ss_pred CC
Q 024413 244 AQ 245 (268)
Q Consensus 244 ~~ 245 (268)
.+
T Consensus 170 ~~ 171 (434)
T 1zun_B 170 NG 171 (434)
T ss_dssp TT
T ss_pred Cc
Confidence 86
No 279
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.11 E-value=2.5e-10 Score=112.45 Aligned_cols=70 Identities=17% Similarity=0.246 Sum_probs=49.9
Q ss_pred CCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeecCCCcC
Q 024413 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA 244 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK~Dl~ 244 (268)
+..+.|+||||+.++.. ....+++ .+|.+++|+|+......... ..+..+...++|+++|+||+|+.
T Consensus 76 ~~~i~liDTPG~~df~~------~~~~~l~--~aD~~ilVvDa~~g~~~~t~-----~~~~~~~~~~~p~ivviNKiD~~ 142 (691)
T 1dar_A 76 DHRINIIDTPGHVDFTI------EVERSMR--VLDGAIVVFDSSQGVEPQSE-----TVWRQAEKYKVPRIAFANKMDKT 142 (691)
T ss_dssp TEEEEEECCCSSTTCHH------HHHHHHH--HCSEEEEEEETTTCSCHHHH-----HHHHHHHHTTCCEEEEEECTTST
T ss_pred CeEEEEEECcCccchHH------HHHHHHH--HCCEEEEEEECCCCcchhhH-----HHHHHHHHcCCCEEEEEECCCcc
Confidence 45799999999987632 2333332 37999999999877655432 12344556789999999999998
Q ss_pred Chh
Q 024413 245 QHE 247 (268)
Q Consensus 245 ~~~ 247 (268)
..+
T Consensus 143 ~~~ 145 (691)
T 1dar_A 143 GAD 145 (691)
T ss_dssp TCC
T ss_pred cCC
Confidence 643
No 280
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.10 E-value=1.8e-11 Score=108.97 Aligned_cols=69 Identities=14% Similarity=0.042 Sum_probs=41.1
Q ss_pred CEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHh--hCCCceeeecCCCcC
Q 024413 167 DYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK--TRLPLVLAFNKTDVA 244 (268)
Q Consensus 167 ~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~--~~~p~ilV~NK~Dl~ 244 (268)
.+.|+|+||+..+... ...+ ...+|++++|+|+........... .....+.. .++|+++|+||+|+.
T Consensus 204 ~~~l~Dt~G~~~~~~~------~~~~--~~~~d~~i~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~p~ilv~nK~Dl~ 272 (332)
T 2wkq_A 204 NLGLWDTAGLEDYDRL------RPLS--YPQTDVFLICFSLVSPASFHHVRA---KWYPEVRHHCPNTPIILVGTKLDLR 272 (332)
T ss_dssp EEEEEEECCCGGGTTT------GGGG--CTTCSEEEEEEETTCHHHHHHHHH---THHHHHHHHCTTSCEEEEEECHHHH
T ss_pred EEEEEeCCCchhhhHH------HHHh--ccCCCEEEEEEeCCCHHHHHHHHH---HHHHHHHhhCCCCcEEEEEEchhcc
Confidence 4669999998765221 1111 235799999999864322111100 01122222 278999999999997
Q ss_pred Ch
Q 024413 245 QH 246 (268)
Q Consensus 245 ~~ 246 (268)
..
T Consensus 273 ~~ 274 (332)
T 2wkq_A 273 DD 274 (332)
T ss_dssp TC
T ss_pred cc
Confidence 54
No 281
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.10 E-value=2.1e-10 Score=111.58 Aligned_cols=68 Identities=19% Similarity=0.274 Sum_probs=43.9
Q ss_pred CCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcC-------CchhhHHHHHHHHHHHHhhCCC-cee
Q 024413 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA-------NPMTFMSNMLYACSILYKTRLP-LVL 236 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~-------~~~~~~~~~~~~~~~l~~~~~p-~il 236 (268)
+..+.|+||||+.++.. ..... ...+|++|+|+|+..+. .... ......+...+.| +|+
T Consensus 244 ~~~~~iiDTPG~e~f~~------~~~~~--~~~aD~~llVVDa~~g~~e~~~~~~~qt-----~e~l~~~~~lgi~~iIV 310 (611)
T 3izq_1 244 RANFTIVDAPGHRDFVP------NAIMG--ISQADMAILCVDCSTNAFESGFDLDGQT-----KEHMLLASSLGIHNLII 310 (611)
T ss_dssp SCEEEEEECCSSSCHHH------HHTTT--SSCCSEEEEEEECSHHHHHTTCCTTSHH-----HHHHHHHHTTTCCEEEE
T ss_pred CceEEEEECCCCcccHH------HHHHH--HhhcCceEEEEECCCCcccccchhhhHH-----HHHHHHHHHcCCCeEEE
Confidence 45799999999977521 11111 24589999999997641 1222 1112334455655 899
Q ss_pred eecCCCcCC
Q 024413 237 AFNKTDVAQ 245 (268)
Q Consensus 237 V~NK~Dl~~ 245 (268)
|+||+|+++
T Consensus 311 VvNKiDl~~ 319 (611)
T 3izq_1 311 AMNKMDNVD 319 (611)
T ss_dssp EEECTTTTT
T ss_pred EEecccccc
Confidence 999999987
No 282
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.10 E-value=6.9e-10 Score=93.38 Aligned_cols=98 Identities=15% Similarity=0.082 Sum_probs=62.9
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCC-----
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGG----- 140 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----- 140 (268)
+++|.+++|+||||||||||++.|++...+.++.+.+.+.+.... .+...+..++......
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~ 85 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRD--------------SIIRQAKQFNWDFEEYIEKKL 85 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHH--------------HHHHHHHHTTCCCGGGBTTTE
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHH--------------HHHHHHHHhcchHHHHhhCCE
Confidence 678999999999999999999999998877777776655332100 0111111222211100
Q ss_pred -----------cccchhhhcHHHHHHHHHHHHHhcCCC--EEEEeCCCCc
Q 024413 141 -----------ILTSLNLFTTKFDEVISLIERRADHLD--YVLVDTPGQI 177 (268)
Q Consensus 141 -----------~~~~~~~lS~G~~qr~~ia~al~~~~~--illlDePG~~ 177 (268)
........|.++.++.........+|+ ++++|||+..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~ 135 (235)
T 2w0m_A 86 IIIDALMKEKEDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSAL 135 (235)
T ss_dssp EEEECCC----CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGG
T ss_pred EEEeccccccCceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHh
Confidence 000012347888877766666667999 9999999854
No 283
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.09 E-value=3.3e-10 Score=104.93 Aligned_cols=68 Identities=16% Similarity=0.227 Sum_probs=44.0
Q ss_pred CCEEEEeCCCCcchhhhhhHHHHHHHHHh-ccCCcEEEEEEcCCCcC-CchhhHHHHHHHHHHHHhhC-CCceeeecCCC
Q 024413 166 LDYVLVDTPGQIEIFTWSASGAIITEAFA-STFPTVVTYVVDTPRSA-NPMTFMSNMLYACSILYKTR-LPLVLAFNKTD 242 (268)
Q Consensus 166 ~~illlDePG~~~~~~~~~~~~~i~~~~~-~~~~d~vv~vvD~~~~~-~~~~~~~~~~~~~~~l~~~~-~p~ilV~NK~D 242 (268)
..+.|+|+||+.++.. ...+ ...+|++++|+|+..+. .++... . +..+...+ .|+++|+||+|
T Consensus 81 ~~i~iiDtPGh~~f~~---------~~~~~~~~~D~~ilVvda~~g~~~~qt~e--~---l~~~~~l~~~~iivv~NK~D 146 (408)
T 1s0u_A 81 RRVSFVDSPGHETLMA---------TMLSGASLMDGAILVIAANEPCPQPQTKE--H---LMALEILGIDKIIIVQNKID 146 (408)
T ss_dssp EEEEEEECSSHHHHHH---------HHHTTCSCCSEEEEEEETTSCSSCHHHHH--H---HHHHHHTTCCCEEEEEECTT
T ss_pred cEEEEEECCCHHHHHH---------HHHHhHhhCCEEEEEEECCCCCCCchhHH--H---HHHHHHcCCCeEEEEEEccC
Confidence 4689999999755411 1122 24579999999998765 343321 1 12223334 47999999999
Q ss_pred cCChh
Q 024413 243 VAQHE 247 (268)
Q Consensus 243 l~~~~ 247 (268)
+.+.+
T Consensus 147 l~~~~ 151 (408)
T 1s0u_A 147 LVDEK 151 (408)
T ss_dssp SSCTT
T ss_pred CCCHH
Confidence 98754
No 284
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.08 E-value=6.4e-11 Score=120.95 Aligned_cols=121 Identities=18% Similarity=0.078 Sum_probs=70.2
Q ss_pred CeEEEEEecCCCCHHHHHHHHHhcccCcccEE-EEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccchhh
Q 024413 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRG-YVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (268)
Q Consensus 69 g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 147 (268)
|.+++|+|||||||||||+++ |+..+..... ++.+... .++..+++- ..+++...... ..+.
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i-Gl~~~~aqiG~~Vpq~~~---~l~v~d~I~-----------~rig~~d~~~~--~~st 851 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA-GLLAVMAQMGCYVPAEVC---RLTPIDRVF-----------TRLGASDRIMS--GEST 851 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH-HHHHHHHTTTCCEESSEE---EECCCSBEE-----------EECC-----------CH
T ss_pred CcEEEEECCCCCChHHHHHHH-HHHHHHhheeEEeccCcC---CCCHHHHHH-----------HHcCCHHHHhh--chhh
Confidence 899999999999999999999 8876533222 3332211 111111110 11222221111 2567
Q ss_pred hcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhh-hhHHHHHHHHHhcc-CCcEEEEEEcC
Q 024413 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTW-SASGAIITEAFAST-FPTVVTYVVDT 207 (268)
Q Consensus 148 lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~-~~~~~~i~~~~~~~-~~d~vv~vvD~ 207 (268)
+|++|++ ++++++++.+|+++|+||||..-.... ......+.+++... ...+++..||.
T Consensus 852 f~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~ 912 (1022)
T 2o8b_B 852 FFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYH 912 (1022)
T ss_dssp HHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCH
T ss_pred hHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCH
Confidence 8888886 899999999999999999987543222 22233455555444 34444444443
No 285
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=99.08 E-value=1.8e-09 Score=95.99 Aligned_cols=156 Identities=17% Similarity=0.161 Sum_probs=86.6
Q ss_pred CeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccchhhh
Q 024413 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLF 148 (268)
Q Consensus 69 g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l 148 (268)
+.+++++|++|+||||++..|++...+.++++.+.+.|+.... . ......+.+..++.-.... ...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~---a-------~~ql~~~~~~~~v~v~~~~----~~~ 163 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPA---A-------LEQLQQLGQQIGVPVYGEP----GEK 163 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSH---H-------HHHHHHHHHHHTCCEECCT----TCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHH---H-------HHHHHHHhccCCeEEEecC----CCC
Confidence 8899999999999999999999999888888988877653211 0 0011122333344211000 000
Q ss_pred cHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHH
Q 024413 149 TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILY 228 (268)
Q Consensus 149 S~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~ 228 (268)
.....-+-.+..+-..+.+++|+||||.............+.+..+...+|.+++|+|+..+ .+.... ...+.
T Consensus 164 ~p~~~~~~~l~~~~~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---~~~~~~----~~~~~ 236 (297)
T 1j8m_F 164 DVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG---QKAYDL----ASKFN 236 (297)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG---GGHHHH----HHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch---HHHHHH----HHHHH
Confidence 11111111222222368899999999986510111122222222222357999999998643 221111 12222
Q ss_pred hhCCC-ceeeecCCCcCCh
Q 024413 229 KTRLP-LVLAFNKTDVAQH 246 (268)
Q Consensus 229 ~~~~p-~ilV~NK~Dl~~~ 246 (268)
. ..| ..+|+||+|....
T Consensus 237 ~-~~~i~gvVlnk~D~~~~ 254 (297)
T 1j8m_F 237 Q-ASKIGTIIITKMDGTAK 254 (297)
T ss_dssp H-TCTTEEEEEECGGGCTT
T ss_pred h-hCCCCEEEEeCCCCCcc
Confidence 2 466 6789999997643
No 286
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.08 E-value=1.7e-10 Score=112.69 Aligned_cols=71 Identities=15% Similarity=0.289 Sum_probs=56.0
Q ss_pred cCCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeecCCCc
Q 024413 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDV 243 (268)
Q Consensus 164 ~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK~Dl 243 (268)
.+..+.|+||||..+|.. .+.+.+ ..+|.+|+|||+..+..++.. ..++.+...++|.++++||+|.
T Consensus 65 ~~~~iNlIDTPGH~DF~~------Ev~raL--~~~DgavlVVDa~~GV~~qT~-----~v~~~a~~~~lp~i~~INKmDr 131 (638)
T 3j25_A 65 ENTKVNIIDTPGHMDFLA------EVYRSL--SVLDGAILLISAKDGVQAQTR-----ILFHALRKMGIPTIFFINKIDQ 131 (638)
T ss_dssp SSCBCCCEECCCSSSTHH------HHHHHH--TTCSEEECCEESSCTTCSHHH-----HHHHHHHHHTCSCEECCEECCS
T ss_pred CCEEEEEEECCCcHHHHH------HHHHHH--HHhCEEEEEEeCCCCCcHHHH-----HHHHHHHHcCCCeEEEEecccc
Confidence 467899999999999844 444444 447999999999999888763 2357777889999999999998
Q ss_pred CChh
Q 024413 244 AQHE 247 (268)
Q Consensus 244 ~~~~ 247 (268)
...+
T Consensus 132 ~~a~ 135 (638)
T 3j25_A 132 NGID 135 (638)
T ss_dssp SSCC
T ss_pred ccCC
Confidence 7654
No 287
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.08 E-value=4.7e-10 Score=105.52 Aligned_cols=73 Identities=11% Similarity=0.210 Sum_probs=44.4
Q ss_pred CCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhH--HHHHHHHHHHHhhCCC-ceeeecCC
Q 024413 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFM--SNMLYACSILYKTRLP-LVLAFNKT 241 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~--~~~~~~~~~l~~~~~p-~ilV~NK~ 241 (268)
+..+.|+||||+.++.. ..... ...+|++++|+|+..+..+..+. .+....+..+...++| +|+|+||+
T Consensus 84 ~~~~~iiDtPGh~~f~~------~~~~~--~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~ 155 (458)
T 1f60_A 84 KYQVTVIDAPGHRDFIK------NMITG--TSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKM 155 (458)
T ss_dssp SEEEEEEECCCCTTHHH------HHHHS--SSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECG
T ss_pred CceEEEEECCCcHHHHH------HHHhh--hhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEcc
Confidence 44699999999876522 22222 24589999999997643210000 0111112334456776 88999999
Q ss_pred CcCC
Q 024413 242 DVAQ 245 (268)
Q Consensus 242 Dl~~ 245 (268)
|+.+
T Consensus 156 Dl~~ 159 (458)
T 1f60_A 156 DSVK 159 (458)
T ss_dssp GGGT
T ss_pred cccc
Confidence 9984
No 288
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.08 E-value=9.2e-13 Score=110.55 Aligned_cols=106 Identities=19% Similarity=0.073 Sum_probs=65.3
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC--CCccccccc-------chhhHHHHHHHHHHcCCC
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV--MTLPFAANI-------DIRDTIRYKEVMKQFNLG 136 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~--~~~~~~~~~-------~~~~~~~~~~~l~~~~l~ 136 (268)
.++|.+++|+|+||||||||+++|+|++.+ ...++.+..... ...+...+. ...+...+.+.++.+++.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~--~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 80 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE--RVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLEHAQALLRG 80 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG--GEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHHHHHHHHHTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC--CeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHHHHHHHHHcC
Confidence 467899999999999999999999998765 234444433322 111111110 012345566777887776
Q ss_pred CCCCcccchhhhcHHHH----HHHHHHHHHhcCCCEEEEeCCC
Q 024413 137 PNGGILTSLNLFTTKFD----EVISLIERRADHLDYVLVDTPG 175 (268)
Q Consensus 137 ~~~~~~~~~~~lS~G~~----qr~~ia~al~~~~~illlDePG 175 (268)
..... .+..+|+|++ ||++++++++.++.++++|||.
T Consensus 81 ~~~~~--~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~ 121 (211)
T 3asz_A 81 LPVEM--PVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKEL 121 (211)
T ss_dssp CCEEE--CCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHH
T ss_pred CCcCC--CcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHH
Confidence 54333 3678999975 4555566666666666666663
No 289
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.07 E-value=1.6e-10 Score=111.09 Aligned_cols=71 Identities=18% Similarity=0.158 Sum_probs=56.4
Q ss_pred cCCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeecCCCc
Q 024413 164 DHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDV 243 (268)
Q Consensus 164 ~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK~Dl 243 (268)
.+..+.|+||||..+|.. .+.+.+ ..+|.+|+|||+..+..++... .++.+...++|.++++||+|.
T Consensus 98 ~~~~iNlIDTPGHvDF~~------Ev~raL--~~~DgAvlVvda~~GV~~qT~~-----v~~~a~~~~lp~i~fINK~Dr 164 (548)
T 3vqt_A 98 RDRVVNLLDTPGHQDFSE------DTYRVL--TAVDSALVVIDAAKGVEAQTRK-----LMDVCRMRATPVMTFVNKMDR 164 (548)
T ss_dssp TTEEEEEECCCCGGGCSH------HHHHHH--HSCSEEEEEEETTTBSCHHHHH-----HHHHHHHTTCCEEEEEECTTS
T ss_pred CCEEEEEEeCCCcHHHHH------HHHHHH--HhcCceEEEeecCCCcccccHH-----HHHHHHHhCCceEEEEecccc
Confidence 366799999999999855 444444 3469999999999998887633 357777889999999999999
Q ss_pred CChh
Q 024413 244 AQHE 247 (268)
Q Consensus 244 ~~~~ 247 (268)
...+
T Consensus 165 ~~ad 168 (548)
T 3vqt_A 165 EALH 168 (548)
T ss_dssp CCCC
T ss_pred hhcc
Confidence 7654
No 290
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.07 E-value=9.3e-10 Score=99.97 Aligned_cols=100 Identities=18% Similarity=0.202 Sum_probs=68.8
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcc--cCcc----cE-EEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCC
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHT--QSRN----IR-GYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPN 138 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~--~~~~----g~-i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 138 (268)
+++|.++.|+||||||||||++.|++.. +++. |. +|+.+.+.. ...++..+.+.+++...
T Consensus 128 i~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~-------------~~~~i~~i~q~~~~~~~ 194 (349)
T 1pzn_A 128 IETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF-------------RPERIREIAQNRGLDPD 194 (349)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC-------------CHHHHHHHHHTTTCCHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC-------------CHHHHHHHHHHcCCCHH
Confidence 7899999999999999999999999988 5554 56 788765431 11223334444444321
Q ss_pred ---CCcccchhhhcHHHHHHHHHHHHHh-------cCCCEEEEeCCCCcc
Q 024413 139 ---GGILTSLNLFTTKFDEVISLIERRA-------DHLDYVLVDTPGQIE 178 (268)
Q Consensus 139 ---~~~~~~~~~lS~G~~qr~~ia~al~-------~~~~illlDePG~~~ 178 (268)
......-..-|.++.|++.++++++ .+|+++|+|+|+...
T Consensus 195 ~v~~ni~~~~~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~l 244 (349)
T 1pzn_A 195 EVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHF 244 (349)
T ss_dssp HHGGGEEEEECCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTH
T ss_pred HHhhCEEEEecCChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhh
Confidence 0000000112678899999999888 689999999998753
No 291
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.06 E-value=1.8e-10 Score=106.68 Aligned_cols=70 Identities=17% Similarity=0.231 Sum_probs=44.6
Q ss_pred CCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcC-CchhhHHHHHHHHHHHHhhC-CCceeeecCCCc
Q 024413 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA-NPMTFMSNMLYACSILYKTR-LPLVLAFNKTDV 243 (268)
Q Consensus 166 ~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~-~~~~~~~~~~~~~~~l~~~~-~p~ilV~NK~Dl 243 (268)
..+.|+|+||+.++.. ..... ...+|++++|+|+..+. .++... . +..+...+ .|+++|+||+|+
T Consensus 83 ~~i~iiDtPGh~~f~~------~~~~~--~~~~D~~ilVvda~~g~~~~qt~e--~---l~~~~~~~~~~iivviNK~Dl 149 (410)
T 1kk1_A 83 RRVSFIDAPGHEALMT------TMLAG--ASLMDGAILVIAANEPCPRPQTRE--H---LMALQIIGQKNIIIAQNKIEL 149 (410)
T ss_dssp EEEEEEECSSHHHHHH------HHHHC--GGGCSEEEEEEETTSCSSCHHHHH--H---HHHHHHHTCCCEEEEEECGGG
T ss_pred cEEEEEECCChHHHHH------HHHhh--hhhCCEEEEEEECCCCCCChhHHH--H---HHHHHHcCCCcEEEEEECccC
Confidence 4689999999865421 11111 23579999999998765 443321 1 12223334 478899999999
Q ss_pred CChhh
Q 024413 244 AQHEF 248 (268)
Q Consensus 244 ~~~~~ 248 (268)
.+.++
T Consensus 150 ~~~~~ 154 (410)
T 1kk1_A 150 VDKEK 154 (410)
T ss_dssp SCHHH
T ss_pred CCHHH
Confidence 88653
No 292
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.06 E-value=1e-09 Score=102.52 Aligned_cols=73 Identities=15% Similarity=0.261 Sum_probs=45.4
Q ss_pred CCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcC-Cch-hhHHHHHHHHHHHHhhCC-CceeeecCC
Q 024413 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA-NPM-TFMSNMLYACSILYKTRL-PLVLAFNKT 241 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~-~~~-~~~~~~~~~~~~l~~~~~-p~ilV~NK~ 241 (268)
+..+.|+||||+.++.. ..... ...+|++++|+|+..+. +.. .+..+....+..+...+. |+++|+||+
T Consensus 83 ~~~~~iiDtpG~~~f~~------~~~~~--~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~ 154 (435)
T 1jny_A 83 KYFFTIIDAPGHRDFVK------NMITG--ASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKM 154 (435)
T ss_dssp SCEEEECCCSSSTTHHH------HHHHT--SSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECG
T ss_pred CeEEEEEECCCcHHHHH------HHHhh--hhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcc
Confidence 45799999999987632 22222 24589999999997641 000 011122222334445565 588999999
Q ss_pred CcCC
Q 024413 242 DVAQ 245 (268)
Q Consensus 242 Dl~~ 245 (268)
|+.+
T Consensus 155 Dl~~ 158 (435)
T 1jny_A 155 DLTE 158 (435)
T ss_dssp GGSS
T ss_pred cCCC
Confidence 9987
No 293
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.04 E-value=4.6e-10 Score=100.65 Aligned_cols=148 Identities=17% Similarity=0.199 Sum_probs=86.3
Q ss_pred CeEEEEEecCCCCHHHHHHHHHhcc--------cCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCC
Q 024413 69 PVIIIVVGMAGSGKTTFMHRLVCHT--------QSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGG 140 (268)
Q Consensus 69 g~~v~iiG~~GsGKSTLl~~l~g~~--------~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 140 (268)
-++++|+|+||||||||+|.|.|.. .++.|.+.+++.......... ..+ .++|
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~------------------~el-~~gC 64 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQI------------------KTL-TNGC 64 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEE------------------EEE-TTSC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCE------------------EEE-CCCc
Confidence 3688999999999999999999987 667788887776542111100 011 3678
Q ss_pred cccchhhhcHHHHHHHH-HH---HHHhcCCCEEEEeCCCCcchhhhhhHHHH-HHHHH-hccCCcEEEEEEcCCCcCCch
Q 024413 141 ILTSLNLFTTKFDEVIS-LI---ERRADHLDYVLVDTPGQIEIFTWSASGAI-ITEAF-ASTFPTVVTYVVDTPRSANPM 214 (268)
Q Consensus 141 ~~~~~~~lS~G~~qr~~-ia---~al~~~~~illlDePG~~~~~~~~~~~~~-i~~~~-~~~~~d~vv~vvD~~~~~~~~ 214 (268)
+||.... ..++.+. ++ +.....+++++++..|..++.. ..... ..... .....+.++.++|+.......
T Consensus 65 icc~~~~---~~~~~l~~l~~~~q~~~~~~~~~v~E~~~l~~p~~--~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~ 139 (318)
T 1nij_A 65 ICCSRSN---ELEDALLDLLDNLDKGNIQFDRLVIECTGMADPGP--IIQTFFSHEVLCQRYLLDGVIALVDAVHADEQM 139 (318)
T ss_dssp EEECTTS---CHHHHHHHHHHHHHHTSCCCSEEEEEEETTCCHHH--HHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHH
T ss_pred eEEcccH---HHHHHHHHHHhHHhcCCCCCCEEEEeCCCCCCHHH--HHHHHhcCccccCeEEECCEEEEEEHHHHHHHH
Confidence 8876542 2233333 21 1111245899999999877532 11000 00111 122346788889985432111
Q ss_pred hhHHHHHHHHHHHHhhCCCceeeecCCCcCCh
Q 024413 215 TFMSNMLYACSILYKTRLPLVLAFNKTDVAQH 246 (268)
Q Consensus 215 ~~~~~~~~~~~~l~~~~~p~ilV~NK~Dl~~~ 246 (268)
. .. -....|...+.++++||.|+.++
T Consensus 140 ~---~l---s~g~~Q~~~ad~ill~k~dl~de 165 (318)
T 1nij_A 140 N---QF---TIAQSQVGYADRILLTKTDVAGE 165 (318)
T ss_dssp H---HC---HHHHHHHHTCSEEEEECTTTCSC
T ss_pred h---hc---hHHHHHHHhCCEEEEECcccCCH
Confidence 1 10 01223445678888999999975
No 294
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.04 E-value=1e-09 Score=104.25 Aligned_cols=155 Identities=17% Similarity=0.196 Sum_probs=80.5
Q ss_pred cCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCC-cccch
Q 024413 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGG-ILTSL 145 (268)
Q Consensus 67 ~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~ 145 (268)
.+..+++|+|++||||||+++.|+..+...+.++.+...|+... .. .+ .........++.-... ....+
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~---aa-----~~--qL~~~~~~~~i~v~~~~~~~dp 168 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRA---GA-----FD--QLKQNATKARIPFYGSYTEMDP 168 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSS---HH-----HH--HHHHHHHHHTCCEEECCCCSCH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccch---hH-----HH--HHHHHhhccCceEEccCCCCCH
Confidence 45678999999999999999999976654444555555443211 00 00 0011112223321100 00001
Q ss_pred hhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHH
Q 024413 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (268)
Q Consensus 146 ~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~ 225 (268)
..+ -+-++..+...+.+++|+||||..... ......+........+|.+++|+|+..+.+.... ..
T Consensus 169 ~~i-----~~~al~~~~~~~~DvvIIDTpG~~~~~--~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~-------a~ 234 (504)
T 2j37_W 169 VII-----ASEGVEKFKNENFEIIIVDTSGRHKQE--DSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQ-------AK 234 (504)
T ss_dssp HHH-----HHHHHHHHHHTTCCEEEEEECCCCTTC--HHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHH-------HH
T ss_pred HHH-----HHHHHHHHHHCCCcEEEEeCCCCcccc--hhHHHHHHHHHhhhcCceEEEEEeccccccHHHH-------HH
Confidence 111 011222223368899999999987531 1122222222222357999999999775432111 12
Q ss_pred HHHhhCCCc-eeeecCCCcCCh
Q 024413 226 ILYKTRLPL-VLAFNKTDVAQH 246 (268)
Q Consensus 226 ~l~~~~~p~-ilV~NK~Dl~~~ 246 (268)
.+.. .+|+ ++|+||+|....
T Consensus 235 ~~~~-~~~i~gvVlNK~D~~~~ 255 (504)
T 2j37_W 235 AFKD-KVDVASVIVTKLDGHAK 255 (504)
T ss_dssp HHHH-HHCCCCEEEECTTSCCC
T ss_pred HHHh-hcCceEEEEeCCccccc
Confidence 2222 2674 899999998753
No 295
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.04 E-value=5.6e-11 Score=115.19 Aligned_cols=68 Identities=21% Similarity=0.263 Sum_probs=38.2
Q ss_pred CCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcC-------CchhhHHHHHHHHHHHHhhCCC-cee
Q 024413 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA-------NPMTFMSNMLYACSILYKTRLP-LVL 236 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~-------~~~~~~~~~~~~~~~l~~~~~p-~il 236 (268)
+..+.|+||||+.++..... ..+ ..+|++|+|+|+..+. .+... ..+..+...++| +|+
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~------~~~--~~aD~alLVVDa~~g~~e~gi~~~~qt~-----e~l~~~~~lgip~iIv 320 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMI------AGA--SSADFAVLVVDSSQNNFERGFLENGQTR-----EHAYLLRALGISEIVV 320 (592)
T ss_dssp -----CCEEESSSEEEEECC------C---------CCSEEEEEECCSSTTSCSCSSHH-----HHHHHHHHSSCCCEEE
T ss_pred CeEEEEEECCChHHHHHHHH------HHH--hhCCEEEEEEECCCCccccccccchHHH-----HHHHHHHHcCCCeEEE
Confidence 45789999999987633211 111 3479999999998643 33321 113444566787 888
Q ss_pred eecCCCcCC
Q 024413 237 AFNKTDVAQ 245 (268)
Q Consensus 237 V~NK~Dl~~ 245 (268)
|+||+|+++
T Consensus 321 viNKiDl~~ 329 (592)
T 3mca_A 321 SVNKLDLMS 329 (592)
T ss_dssp EEECGGGGT
T ss_pred EEecccccc
Confidence 999999976
No 296
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.04 E-value=9.3e-10 Score=108.62 Aligned_cols=69 Identities=16% Similarity=0.186 Sum_probs=49.0
Q ss_pred CCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeecCCCcCC
Q 024413 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQ 245 (268)
Q Consensus 166 ~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK~Dl~~ 245 (268)
..+.||||||+.++.. ....++ ..+|.+++|+|+..+...... ..+..+...++|.++|+||+|+..
T Consensus 82 ~~i~liDTPG~~df~~------~~~~~l--~~aD~aIlVvDa~~gv~~qt~-----~~~~~~~~~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 82 HRINIIDTPGHVDFTI------EVERSM--RVLDGAVMVYCAVGGVQPQSE-----TVWRQANKYKVPRIAFVNKMDRMG 148 (704)
T ss_pred eeEEEEeCCCccchHH------HHHHHH--HHCCEEEEEEeCCCCCcHHHH-----HHHHHHHHcCCCEEEEEeCCCccc
Confidence 6799999999987632 233333 247999999999876544331 123445566899999999999976
Q ss_pred hh
Q 024413 246 HE 247 (268)
Q Consensus 246 ~~ 247 (268)
.+
T Consensus 149 ~~ 150 (704)
T 2rdo_7 149 AN 150 (704)
T ss_pred cc
Confidence 53
No 297
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.04 E-value=1.1e-09 Score=106.02 Aligned_cols=68 Identities=18% Similarity=0.261 Sum_probs=49.1
Q ss_pred CCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeecCCCcCC
Q 024413 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQ 245 (268)
Q Consensus 166 ~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK~Dl~~ 245 (268)
..+.|+||||+.++.. .....+ ..+|.+++|+|+..+...+... .+......++|+++|+||+|+..
T Consensus 73 ~~inliDTPGh~dF~~------ev~r~l--~~aD~aILVVDa~~gv~~qt~~-----~~~~a~~~~ipiIvviNKiDl~~ 139 (600)
T 2ywe_A 73 YKLHLIDTPGHVDFSY------EVSRAL--AACEGALLLIDASQGIEAQTVA-----NFWKAVEQDLVIIPVINKIDLPS 139 (600)
T ss_dssp EEEEEECCCCSGGGHH------HHHHHH--HTCSEEEEEEETTTBCCHHHHH-----HHHHHHHTTCEEEEEEECTTSTT
T ss_pred EEEEEEECCCcHhHHH------HHHHHH--HhCCEEEEEEECCCCccHHHHH-----HHHHHHHCCCCEEEEEeccCccc
Confidence 3678999999988633 333333 3479999999998877655422 13344467899999999999976
Q ss_pred h
Q 024413 246 H 246 (268)
Q Consensus 246 ~ 246 (268)
.
T Consensus 140 a 140 (600)
T 2ywe_A 140 A 140 (600)
T ss_dssp C
T ss_pred c
Confidence 4
No 298
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=99.03 E-value=2.8e-09 Score=95.70 Aligned_cols=157 Identities=16% Similarity=0.175 Sum_probs=87.0
Q ss_pred cccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHH---HcCCCCCCCc
Q 024413 65 FKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMK---QFNLGPNGGI 141 (268)
Q Consensus 65 ~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~ 141 (268)
...++.+++|+|++|+||||++..|++.+.+.++++.+.+.|+.... .......+.+ ..++. .
T Consensus 101 ~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~----------a~~ql~~~~~~~~~~~l~----v 166 (320)
T 1zu4_A 101 KENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAG----------ATQQLEEWIKTRLNNKVD----L 166 (320)
T ss_dssp CTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHH----------HHHHHHHHHTTTSCTTEE----E
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchh----------HHHHHHHHHhccccCCce----E
Confidence 36789999999999999999999999999988999999887752110 0000111111 11111 0
Q ss_pred c-cchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHH---HHHHh---ccCCcEEEEEEcCCCcCCch
Q 024413 142 L-TSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAII---TEAFA---STFPTVVTYVVDTPRSANPM 214 (268)
Q Consensus 142 ~-~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i---~~~~~---~~~~d~vv~vvD~~~~~~~~ 214 (268)
. .....+.....-.-.+..++..+.+++|+||||..... ......+ ...+. ...+|.+++|+|+... .
T Consensus 167 ip~~~~~~~p~~~~~~~l~~~~~~~yD~VIIDTpg~l~~~--~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~---~ 241 (320)
T 1zu4_A 167 VKANKLNADPASVVFDAIKKAKEQNYDLLLIDTAGRLQNK--TNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG---Q 241 (320)
T ss_dssp ECCSSTTCCHHHHHHHHHHHHHHTTCSEEEEECCCCGGGH--HHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT---H
T ss_pred EeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCCccccc--HHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc---H
Confidence 0 00001111222223344556678999999999985531 1111122 12222 2347899999999632 2
Q ss_pred hhHHHHHHHHHHHHhhCCC-ceeeecCCCcCC
Q 024413 215 TFMSNMLYACSILYKTRLP-LVLAFNKTDVAQ 245 (268)
Q Consensus 215 ~~~~~~~~~~~~l~~~~~p-~ilV~NK~Dl~~ 245 (268)
+.... ...... ..+ .=+|+||+|-..
T Consensus 242 ~~l~~----~~~~~~-~~~i~GvVltk~d~~~ 268 (320)
T 1zu4_A 242 NGVIQ----AEEFSK-VADVSGIILTKMDSTS 268 (320)
T ss_dssp HHHHH----HHHHTT-TSCCCEEEEECGGGCS
T ss_pred HHHHH----HHHHhh-cCCCcEEEEeCCCCCC
Confidence 21111 111111 222 347899999743
No 299
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.02 E-value=4.7e-10 Score=108.70 Aligned_cols=68 Identities=22% Similarity=0.350 Sum_probs=48.9
Q ss_pred CCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeecCCCcCC
Q 024413 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQ 245 (268)
Q Consensus 166 ~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK~Dl~~ 245 (268)
..+.||||||+.++.. .....++ .+|.+++|+|+..+...+... .+......++|+++|+||+|+.+
T Consensus 71 ~~l~liDTPGh~dF~~------ev~~~l~--~aD~aILVVDa~~gv~~qt~~-----~~~~~~~~~ipiIvViNKiDl~~ 137 (599)
T 3cb4_D 71 YQLNFIDTPGHVDFSY------EVSRSLA--ACEGALLVVDAGQGVEAQTLA-----NCYTAMEMDLEVVPVLNKIDLPA 137 (599)
T ss_dssp EEEEEEECCCCGGGHH------HHHHHHH--HCSEEEEEEETTTCCCTHHHH-----HHHHHHHTTCEEEEEEECTTSTT
T ss_pred EEEEEEECCCchHHHH------HHHHHHH--HCCEEEEEEECCCCCCHHHHH-----HHHHHHHCCCCEEEeeeccCccc
Confidence 4688999999987633 3333332 269999999998877665422 13344456899999999999986
Q ss_pred h
Q 024413 246 H 246 (268)
Q Consensus 246 ~ 246 (268)
.
T Consensus 138 a 138 (599)
T 3cb4_D 138 A 138 (599)
T ss_dssp C
T ss_pred c
Confidence 4
No 300
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.01 E-value=1.7e-12 Score=109.18 Aligned_cols=30 Identities=17% Similarity=0.196 Sum_probs=26.1
Q ss_pred cccCCeEEEEEecCCCCHHHHHHHHHhccc
Q 024413 65 FKRKPVIIIVVGMAGSGKTTFMHRLVCHTQ 94 (268)
Q Consensus 65 ~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~ 94 (268)
.+++|++++|+||||||||||+++|+|+.+
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 488999999999999999999999999985
No 301
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.00 E-value=1.3e-09 Score=111.45 Aligned_cols=68 Identities=19% Similarity=0.265 Sum_probs=47.0
Q ss_pred CCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCC-ceeeecCCCc
Q 024413 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLP-LVLAFNKTDV 243 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p-~ilV~NK~Dl 243 (268)
+..+.|+||||+.++.. ..... ...+|++|+|+|+..+..++... .+..+...++| +|+|+||+|+
T Consensus 358 ~~kI~IIDTPGHedF~~------~mi~g--as~AD~aILVVDAtdGv~~QTrE-----hL~ll~~lgIP~IIVVINKiDL 424 (1289)
T 3avx_A 358 TRHYAHVDCPGHADYVK------NMITG--AAQMDGAILVVAATDGPMPQTRE-----HILLGRQVGVPYIIVFLNKCDM 424 (1289)
T ss_dssp SCEEEEEECCCHHHHHH------HHHHT--SCCCSEEEEEEETTTCSCTTHHH-----HHHHHHHHTCSCEEEEEECCTT
T ss_pred CEEEEEEECCChHHHHH------HHHHH--HhhCCEEEEEEcCCccCcHHHHH-----HHHHHHHcCCCeEEEEEeeccc
Confidence 45799999999876521 22221 24589999999998776554311 12344456889 6899999999
Q ss_pred CC
Q 024413 244 AQ 245 (268)
Q Consensus 244 ~~ 245 (268)
.+
T Consensus 425 v~ 426 (1289)
T 3avx_A 425 VD 426 (1289)
T ss_dssp CC
T ss_pred cc
Confidence 86
No 302
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.00 E-value=4.4e-10 Score=111.07 Aligned_cols=70 Identities=16% Similarity=0.205 Sum_probs=54.1
Q ss_pred CCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeecCCCcC
Q 024413 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA 244 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK~Dl~ 244 (268)
+..+.|+||||..+|.. .+.+.++ ..|.+|+|||+..+..++... .++.....++|.++|+||+|..
T Consensus 84 ~~~iNlIDTPGHvDF~~------Ev~~aLr--~~DgavlvVDaveGV~~qT~~-----v~~~a~~~~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 84 NYRVNVIDTPGHVDFTI------EVERSLR--VLDGAVVVFCGTSGVEPQSET-----VWRQANKYGVPRIVYVNKMDRQ 150 (709)
T ss_dssp CEEEEEECCCSCTTCHH------HHHHHHH--HCSEEEEEEETTTCSCHHHHH-----HHHHHHHHTCCEEEEEECSSST
T ss_pred CEEEEEEeCCCCcccHH------HHHHHHH--HhCeEEEEEECCCCCchhHHH-----HHHHHHHcCCCeEEEEcccccc
Confidence 34689999999999854 4444442 369999999999998887632 3567778899999999999986
Q ss_pred Chh
Q 024413 245 QHE 247 (268)
Q Consensus 245 ~~~ 247 (268)
..+
T Consensus 151 ~a~ 153 (709)
T 4fn5_A 151 GAN 153 (709)
T ss_dssp TCC
T ss_pred Ccc
Confidence 543
No 303
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.98 E-value=7.5e-09 Score=96.30 Aligned_cols=153 Identities=19% Similarity=0.143 Sum_probs=86.0
Q ss_pred CCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCc-ccchh
Q 024413 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGI-LTSLN 146 (268)
Q Consensus 68 ~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~ 146 (268)
++.+++++|++|+||||++..|++.+.+.++.+.+.+.|+.... . ......+.+..++.-.... ...+.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~a---a-------~~qL~~~~~~~gv~v~~~~~~~~p~ 166 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPA---A-------REQLRLLGEKVGVPVLEVMDGESPE 166 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHH---H-------HHHHHHHHHHHTCCEEECCTTCCHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCch---h-------HHHHHHhcccCCccEEecCCCCCHH
Confidence 78899999999999999999999999999999998877652110 0 0001112233344311100 00011
Q ss_pred hhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHH
Q 024413 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSI 226 (268)
Q Consensus 147 ~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~ 226 (268)
. .-+-.+..+...+.+++|+||||.... .......+....+...++.+++|+|+..+ .+.... ...
T Consensus 167 ~-----i~~~~l~~~~~~~~DvVIIDTaG~l~~--d~~l~~el~~i~~~~~pd~vlLVvDa~tg---q~av~~----a~~ 232 (425)
T 2ffh_A 167 S-----IRRRVEEKARLEARDLILVDTAGRLQI--DEPLMGELARLKEVLGPDEVLLVLDAMTG---QEALSV----ARA 232 (425)
T ss_dssp H-----HHHHHHHHHHHTTCSEEEEECCCCSSC--CHHHHHHHHHHHHHHCCSEEEEEEEGGGT---THHHHH----HHH
T ss_pred H-----HHHHHHHHHHHCCCCEEEEcCCCcccc--cHHHHHHHHHhhhccCCceEEEEEeccch---HHHHHH----HHH
Confidence 1 111122233346889999999997643 11222222222222357889999998643 222211 112
Q ss_pred HHhhCCC-ceeeecCCCcCC
Q 024413 227 LYKTRLP-LVLAFNKTDVAQ 245 (268)
Q Consensus 227 l~~~~~p-~ilV~NK~Dl~~ 245 (268)
... ..+ .-+|+||+|...
T Consensus 233 f~~-~l~i~GVIlTKlD~~~ 251 (425)
T 2ffh_A 233 FDE-KVGVTGLVLTKLDGDA 251 (425)
T ss_dssp HHH-HTCCCEEEEESGGGCS
T ss_pred HHh-cCCceEEEEeCcCCcc
Confidence 222 233 567999999743
No 304
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.98 E-value=6.6e-10 Score=104.75 Aligned_cols=70 Identities=19% Similarity=0.277 Sum_probs=40.3
Q ss_pred CCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcC-----CchhhHHHHHHHHHHHHhhCCC-ceeee
Q 024413 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSA-----NPMTFMSNMLYACSILYKTRLP-LVLAF 238 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~-----~~~~~~~~~~~~~~~l~~~~~p-~ilV~ 238 (268)
+..+.|+|+||+.++.. ..... ...+|++++|+|+..+. +....+.. .+..+...++| +|+|+
T Consensus 120 ~~~~~iiDtPGh~~f~~------~~~~~--~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e---~l~~~~~~~vp~iivvi 188 (467)
T 1r5b_A 120 HRRFSLLDAPGHKGYVT------NMING--ASQADIGVLVISARRGEFEAGFERGGQTRE---HAVLARTQGINHLVVVI 188 (467)
T ss_dssp SEEEEECCCCC-------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHH---HHHHHHHTTCSSEEEEE
T ss_pred CeEEEEEECCCcHHHHH------HHHhh--cccCCEEEEEEeCCcCccccccCCCCcHHH---HHHHHHHcCCCEEEEEE
Confidence 44689999999977532 22222 24579999999997653 11111211 12334456788 89999
Q ss_pred cCCCcCC
Q 024413 239 NKTDVAQ 245 (268)
Q Consensus 239 NK~Dl~~ 245 (268)
||+|+..
T Consensus 189 NK~Dl~~ 195 (467)
T 1r5b_A 189 NKMDEPS 195 (467)
T ss_dssp ECTTSTT
T ss_pred ECccCCC
Confidence 9999964
No 305
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.97 E-value=1.4e-09 Score=100.58 Aligned_cols=23 Identities=35% Similarity=0.369 Sum_probs=19.9
Q ss_pred EEEEEecCCCCHHHHHHHHHhcc
Q 024413 71 IIIVVGMAGSGKTTFMHRLVCHT 93 (268)
Q Consensus 71 ~v~iiG~~GsGKSTLl~~l~g~~ 93 (268)
.++|+|.+|+|||||+|+|++..
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 57999999999999999999865
No 306
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.97 E-value=3.9e-12 Score=104.47 Aligned_cols=95 Identities=15% Similarity=0.147 Sum_probs=59.8
Q ss_pred eEEEEEecCCCCHHHHHHHHHhcccCc---ccEEEEecccCCC-C-----C-----c-------ccccccchh---hHH-
Q 024413 70 VIIIVVGMAGSGKTTFMHRLVCHTQSR---NIRGYVMNLDPAV-M-----T-----L-------PFAANIDIR---DTI- 124 (268)
Q Consensus 70 ~~v~iiG~~GsGKSTLl~~l~g~~~~~---~g~i~i~~~~~~~-~-----~-----~-------~~~~~~~~~---~~~- 124 (268)
++++|+|++|||||||++.|+|++.++ .|.+.+++.+... + . . +....+-+. ...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i~~~~~~~~ 82 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFIRRVSEEEG 82 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEEEECCHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEEecCChhhh
Confidence 478999999999999999999999988 7999888765221 0 0 0 000000011 122
Q ss_pred -HHHHHHHH-cCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCE
Q 024413 125 -RYKEVMKQ-FNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDY 168 (268)
Q Consensus 125 -~~~~~l~~-~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~i 168 (268)
.+.++++. +. + ..... ...|||||+||++|||++..+|++
T Consensus 83 a~l~~~i~~~l~-g-~dt~i--~EglSgGq~qri~lARall~~p~i 124 (171)
T 2f1r_A 83 NDLDWIYERYLS-D-YDLVI--TEGFSKAGKDRIVVVKKPEEVEHF 124 (171)
T ss_dssp TCHHHHHHHHTT-T-CSEEE--EESCGGGCCCEEEECSSGGGGGGG
T ss_pred hCHHHHHHhhCC-C-CCEEE--ECCcCCCCCcEEEEEecccCCCcc
Confidence 34555555 43 1 11222 345999999999999999998876
No 307
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.97 E-value=1.3e-09 Score=101.83 Aligned_cols=152 Identities=18% Similarity=0.167 Sum_probs=83.8
Q ss_pred CCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCc--ccch
Q 024413 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGI--LTSL 145 (268)
Q Consensus 68 ~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~~~ 145 (268)
++.+++++|++|+||||+++.|++.....+.++.+.+.|+..... ... ...+.+..++.-.... ...+
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a-------~~q---L~~~~~~~gv~v~~~~~~~~dp 167 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAA-------YEQ---LKQLAEKIHVPIYGDETRTKSP 167 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTG-------GGS---SHHHHHHSSCCEECCSSSCCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchH-------HHH---HHHhhhccCcceEecCCCCCCH
Confidence 346899999999999999999999887766778877766532110 000 0111223333211100 0000
Q ss_pred hhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHH
Q 024413 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (268)
Q Consensus 146 ~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~ 225 (268)
..+- +-.+.. ..+.+++|+||||.... .......+........+|.+++|+|+..+. +... ...
T Consensus 168 ~~i~-----~~~l~~--~~~~D~vIIDT~G~~~~--~~~l~~~l~~i~~~~~~d~vllVvda~~g~---~~~~----~~~ 231 (432)
T 2v3c_C 168 VDIV-----KEGMEK--FKKADVLIIDTAGRHKE--EKGLLEEMKQIKEITNPDEIILVIDGTIGQ---QAGI----QAK 231 (432)
T ss_dssp STTH-----HHHHHT--TSSCSEEEEECCCSCSS--HHHHHHHHHHTTSSSCCSEEEEEEEGGGGG---GHHH----HHH
T ss_pred HHHH-----HHHHHH--hhCCCEEEEcCCCCccc--cHHHHHHHHHHHHHhcCcceeEEeeccccH---HHHH----HHH
Confidence 0000 011111 26889999999998653 112222222211223579999999996553 2111 112
Q ss_pred HHHhhCC-C-ceeeecCCCcCCh
Q 024413 226 ILYKTRL-P-LVLAFNKTDVAQH 246 (268)
Q Consensus 226 ~l~~~~~-p-~ilV~NK~Dl~~~ 246 (268)
... ... | ..+|+||+|....
T Consensus 232 ~~~-~~~~~i~gvVlnK~D~~~~ 253 (432)
T 2v3c_C 232 AFK-EAVGEIGSIIVTKLDGSAK 253 (432)
T ss_dssp HHH-TTSCSCEEEEEECSSSCST
T ss_pred HHh-hcccCCeEEEEeCCCCccc
Confidence 222 235 6 7899999998653
No 308
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.96 E-value=4.9e-09 Score=90.78 Aligned_cols=26 Identities=35% Similarity=0.496 Sum_probs=23.1
Q ss_pred ccCCeEEEEEecC---------CCCHHHHHHHHHh
Q 024413 66 KRKPVIIIVVGMA---------GSGKTTFMHRLVC 91 (268)
Q Consensus 66 ~~~g~~v~iiG~~---------GsGKSTLl~~l~g 91 (268)
......++|+|.+ |+|||||++.+.+
T Consensus 16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~ 50 (255)
T 3c5h_A 16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVR 50 (255)
T ss_dssp CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHC
T ss_pred CCceeEEEEECCCccccccCCCCcCHHHHHHHHHh
Confidence 3455789999999 9999999999998
No 309
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.96 E-value=1.3e-09 Score=91.47 Aligned_cols=137 Identities=17% Similarity=0.194 Sum_probs=73.4
Q ss_pred CCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCC----CCCCccc
Q 024413 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLG----PNGGILT 143 (268)
Q Consensus 68 ~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~ 143 (268)
+..+++|+|++|+|||||++.|++..... ..+.+.+.++.. + .+... ++..+.. ..++.++
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~~i~~d~~~---~-------~d~~~----~~~~~~~~~~~~~~~~~~ 93 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNE-VKIGAMLGDVVS---K-------ADYER----VRRFGIKAEAISTGKECH 93 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTT-SCEEEEECSCCC---H-------HHHHH----HHTTTCEEEECCCTTCSS
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEecCCCC---c-------hhHHH----HHhCCCcEEEecCCceee
Confidence 44688999999999999999999875443 333333322210 0 11111 1111110 1111111
Q ss_pred chhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHH
Q 024413 144 SLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYA 223 (268)
Q Consensus 144 ~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~ 223 (268)
+....... ... ...+++++|+||||+...... + ....+.+++|+|+....... +
T Consensus 94 ----~~~~~~~~--~~~-~~~~~d~iiidt~G~~~~~~~----------~-~~~~~~~i~vvd~~~~~~~~--~------ 147 (221)
T 2wsm_A 94 ----LDAHMIYH--RLK-KFSDCDLLLIENVGNLICPVD----------F-DLGENYRVVMVSVTEGDDVV--E------ 147 (221)
T ss_dssp ----CCHHHHHT--TGG-GGTTCSEEEEEEEEBSSGGGG----------C-CCSCSEEEEEEEGGGCTTHH--H------
T ss_pred ----cccHHHHH--HHH-hcCCCCEEEEeCCCCCCCCch----------h-ccccCcEEEEEeCCCcchhh--h------
Confidence 22222111 001 235789999999996221010 0 11357889999986643211 1
Q ss_pred HHHHHhhCCCceeeecCCCcCCh
Q 024413 224 CSILYKTRLPLVLAFNKTDVAQH 246 (268)
Q Consensus 224 ~~~l~~~~~p~ilV~NK~Dl~~~ 246 (268)
......+.|.++|+||+|+.+.
T Consensus 148 -~~~~~~~~~~iiv~NK~Dl~~~ 169 (221)
T 2wsm_A 148 -KHPEIFRVADLIVINKVALAEA 169 (221)
T ss_dssp -HCHHHHHTCSEEEEECGGGHHH
T ss_pred -hhhhhhhcCCEEEEecccCCcc
Confidence 1122346899999999999653
No 310
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.93 E-value=3.6e-09 Score=88.46 Aligned_cols=98 Identities=21% Similarity=0.136 Sum_probs=59.3
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCc-ccc
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGI-LTS 144 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~ 144 (268)
+++|.+++|+|+||+|||||++.|++ ....+.+++...... + ..++.+..+.+++...... ...
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~~~----~---------~~~~~~~~~~~~~~~~~~~~~~~ 81 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEGGF----S---------PERLVQMAETRGLNPEEALSRFI 81 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSCCC----C---------HHHHHHHHHTTTCCHHHHHHHEE
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCCCC----C---------HHHHHHHHHhcCCChHHHhhcEE
Confidence 67899999999999999999999999 333445555432210 0 1112222333333210000 001
Q ss_pred hhhhcHHH--HHHHHHHHHHhcC-CCEEEEeCCCCcc
Q 024413 145 LNLFTTKF--DEVISLIERRADH-LDYVLVDTPGQIE 178 (268)
Q Consensus 145 ~~~lS~G~--~qr~~ia~al~~~-~~illlDePG~~~ 178 (268)
+..+++++ +++++.++++..+ |+++++|||+...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l 118 (220)
T 2cvh_A 82 LFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHY 118 (220)
T ss_dssp EECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCT
T ss_pred EEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHh
Confidence 22344443 5678888888875 9999999998753
No 311
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.93 E-value=2e-11 Score=102.62 Aligned_cols=111 Identities=13% Similarity=0.099 Sum_probs=59.9
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCc---ccEEEEecccCCCC---Cc---ccccccchhhHHHHHHHHHHcCCC
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSR---NIRGYVMNLDPAVM---TL---PFAANIDIRDTIRYKEVMKQFNLG 136 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~---~g~i~i~~~~~~~~---~~---~~~~~~~~~~~~~~~~~l~~~~l~ 136 (268)
.++|++++|+||||||||||+++|+|++.+. .|.+.+++...... .. .........+...+.+.+..+...
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 98 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRLLEPRGLLPRKGAPETFDFEGFQRLCHALKHQ 98 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHHHGGGTCGGGTTSGGGBCHHHHHHHHHHHHHC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHHHHHhcccccCCCCchhhHHHHHHHHHHHhcC
Confidence 4678999999999999999999999999853 56665555432110 00 000000011222233333333222
Q ss_pred CCCC--cccchhhhcHHHHHHHHHH-HHHhcCCCEEEEeCCCC
Q 024413 137 PNGG--ILTSLNLFTTKFDEVISLI-ERRADHLDYVLVDTPGQ 176 (268)
Q Consensus 137 ~~~~--~~~~~~~lS~G~~qr~~ia-~al~~~~~illlDePG~ 176 (268)
.+.. .......+|+|++|+++++ ++++.++.++++|||+.
T Consensus 99 ~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~ 141 (208)
T 3c8u_A 99 ERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW 141 (208)
T ss_dssp SCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG
T ss_pred CceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchh
Confidence 1100 0111234688888887665 44555555555666643
No 312
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.92 E-value=3.7e-10 Score=102.86 Aligned_cols=94 Identities=12% Similarity=0.076 Sum_probs=58.1
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhccc-CcccEEEEe-cccCCC------CCccccc----ccc-----hh--h----
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQ-SRNIRGYVM-NLDPAV------MTLPFAA----NID-----IR--D---- 122 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~-~~~g~i~i~-~~~~~~------~~~~~~~----~~~-----~~--~---- 122 (268)
..+|.+++|+|+||||||||+|+|+|... +..|.+.+. |.+... ..++... ... .. .
T Consensus 212 ~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~~l~~l~~~e~ 291 (358)
T 2rcn_A 212 ALTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREFGLWHLEPEQI 291 (358)
T ss_dssp HHTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHHTCCCCCCCHHHH
T ss_pred hcCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHHhhhcCCCHHHH
Confidence 35789999999999999999999999999 999988875 422100 0011000 000 00 1
Q ss_pred HHHHHHHHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHH
Q 024413 123 TIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEVISLIERR 162 (268)
Q Consensus 123 ~~~~~~~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al 162 (268)
...+.++++.+++..... |.+..+| |++||+++++++
T Consensus 292 ~~~~~e~l~~~gl~~f~~--~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 292 TQGFVEFHDYLGHCKYRD--CKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp HHTSGGGGGGTTCSSSTT--CCSSSCT-TCHHHHHHHHTS
T ss_pred HHHHHHHHHHcCCchhcC--CCcccCC-HHHHHHHHHhcC
Confidence 123455677777765433 4478899 999999999875
No 313
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.91 E-value=1.5e-09 Score=99.43 Aligned_cols=86 Identities=19% Similarity=0.220 Sum_probs=59.4
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCc-ccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccc
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSR-NIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTS 144 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~-~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 144 (268)
+++|.+++|+||||||||||+++|+|++.++ +|.|.+.+.+.... ....+..-.. ..+++.
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~---~~~~~~~v~Q-------~~~g~~-------- 194 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYV---FKHKKSIVNQ-------REVGED-------- 194 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSC---CCCSSSEEEE-------EEBTTT--------
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhh---hccCceEEEe-------eecCCC--------
Confidence 5789999999999999999999999999987 89997776543210 0000000000 012221
Q ss_pred hhhhcHHHHHHHHHHHHHhcCCCEEEEeCCC
Q 024413 145 LNLFTTKFDEVISLIERRADHLDYVLVDTPG 175 (268)
Q Consensus 145 ~~~lS~G~~qr~~ia~al~~~~~illlDePG 175 (268)
+..| +.++++++..+|+++++|||.
T Consensus 195 ~~~~------~~~l~~~L~~~pd~illdE~~ 219 (372)
T 2ewv_A 195 TKSF------ADALRAALREDPDVIFVGEMR 219 (372)
T ss_dssp BSCS------HHHHHHHTTSCCSEEEESCCC
T ss_pred HHHH------HHHHHHHhhhCcCEEEECCCC
Confidence 2233 357888899999999999998
No 314
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.90 E-value=1.5e-09 Score=109.07 Aligned_cols=66 Identities=26% Similarity=0.273 Sum_probs=48.4
Q ss_pred CCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHhhCCCceeeecCCCcC
Q 024413 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVA 244 (268)
Q Consensus 166 ~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~~~~p~ilV~NK~Dl~ 244 (268)
..+.||||||+.++.. ....++ ..+|.+|+|+|+..+....+.. .+..+...++|.++|+||+|+.
T Consensus 98 ~~i~liDTPG~~df~~------~~~~~l--~~aD~ailVvDa~~g~~~qt~~-----~~~~~~~~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 98 FLINLIDSPGHVDFSS------EVTAAL--RVTDGALVVVDTIEGVCVQTET-----VLRQALGERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEECCCCCCSSCH------HHHHHH--HTCSEEEEEEETTTBSCHHHHH-----HHHHHHHTTCEEEEEEECHHHH
T ss_pred ceEEEEECcCchhhHH------HHHHHH--HhCCEEEEEEeCCCCCCHHHHH-----HHHHHHHcCCCeEEEEECCCcc
Confidence 4689999999988743 333333 3479999999998876665421 1344446689999999999987
No 315
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.89 E-value=5.2e-10 Score=91.95 Aligned_cols=39 Identities=23% Similarity=0.213 Sum_probs=35.0
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEeccc
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLD 106 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~ 106 (268)
+++|.+++|+||||||||||+++|++. +..|.+++++.+
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~ 44 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDD 44 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccc
Confidence 678999999999999999999999997 677889888764
No 316
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.89 E-value=4.1e-09 Score=105.25 Aligned_cols=123 Identities=15% Similarity=0.102 Sum_probs=63.7
Q ss_pred cCCeEEEEEecCCCCHHHHHHHHHhcccC-cccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccch
Q 024413 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQS-RNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (268)
Q Consensus 67 ~~g~~v~iiG~~GsGKSTLl~~l~g~~~~-~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 145 (268)
++|.+++|+||||||||||+++++|.... ..|. ++.... ..++....+ +..++...+.. ...
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~-~vpa~~---~~i~~~~~i-----------~~~~~~~d~l~--~~~ 667 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS-YVPAQK---VEIGPIDRI-----------FTRVGAADDLA--SGR 667 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC-CBSSSE---EEECCCCEE-----------EEEEC-----------
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCc-ccchhc---ccceeHHHH-----------HhhCCHHHHHH--hhh
Confidence 67899999999999999999999997532 1121 110000 000000000 00011111111 114
Q ss_pred hhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhh-HHHHHHHHHhcc-CCcEEEEEEcC
Q 024413 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSA-SGAIITEAFAST-FPTVVTYVVDT 207 (268)
Q Consensus 146 ~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~-~~~~i~~~~~~~-~~d~vv~vvD~ 207 (268)
+.+|++|++...+ ...+.+|+++|+||||..-...... ....+.+.+... ...+++..||.
T Consensus 668 stf~~e~~~~~~i-l~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~ 730 (800)
T 1wb9_A 668 STFMVEMTETANI-LHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYF 730 (800)
T ss_dssp --CHHHHHHHHHH-HHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCG
T ss_pred hhhhHHHHHHHHH-HHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCH
Confidence 5678888765444 4467899999999997653322222 223455555443 45555555554
No 317
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.87 E-value=6.4e-09 Score=94.85 Aligned_cols=92 Identities=14% Similarity=0.076 Sum_probs=61.2
Q ss_pred cccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhh-HHHHHHHHHHcCCCCCCCccc
Q 024413 65 FKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRD-TIRYKEVMKQFNLGPNGGILT 143 (268)
Q Consensus 65 ~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~l~~~~~~~~ 143 (268)
.+++|++++|+||||||||||+++|+|++.+++|.+.+.+....... .....+.... ...
T Consensus 171 ~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~-~~~~~v~~v~~q~~------------------ 231 (361)
T 2gza_A 171 AVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLP-DHPNHVHLFYPSEA------------------ 231 (361)
T ss_dssp HHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCT-TCSSEEEEECC---------------------
T ss_pred HHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCcc-ccCCEEEEeecCcc------------------
Confidence 37899999999999999999999999999999999999874321100 0000000000 000
Q ss_pred chhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 024413 144 SLNLFTTKFDEVISLIERRADHLDYVLVDTPGQ 176 (268)
Q Consensus 144 ~~~~lS~G~~qr~~ia~al~~~~~illlDePG~ 176 (268)
...++++..++..+..++...|+.+++||+-.
T Consensus 232 -~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~ 263 (361)
T 2gza_A 232 -KEEENAPVTAATLLRSCLRMKPTRILLAELRG 263 (361)
T ss_dssp --------CCHHHHHHHHTTSCCSEEEESCCCS
T ss_pred -ccccccccCHHHHHHHHHhcCCCEEEEcCchH
Confidence 00113455577788888888999999999864
No 318
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.87 E-value=4.2e-10 Score=102.63 Aligned_cols=111 Identities=11% Similarity=0.069 Sum_probs=62.6
Q ss_pred cccccC--CeEEEEEecCCCCHHHHHHHHHhcccCcc----cEEEEecccCCCC-Ccccc--cccchhhHHHHHHHHH--
Q 024413 63 INFKRK--PVIIIVVGMAGSGKTTFMHRLVCHTQSRN----IRGYVMNLDPAVM-TLPFA--ANIDIRDTIRYKEVMK-- 131 (268)
Q Consensus 63 ~~~~~~--g~~v~iiG~~GsGKSTLl~~l~g~~~~~~----g~i~i~~~~~~~~-~~~~~--~~~~~~~~~~~~~~l~-- 131 (268)
...+.+ +.+++|+|+||||||||+++|+|++.++. |.+++.+...... ..... ..+..........-..
T Consensus 162 ~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~~~~~~~~~~I~~~~q~~~~~~~t~~ 241 (365)
T 1lw7_A 162 PKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMALGHQRYIDYAVRHS 241 (365)
T ss_dssp CTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTTSSCTTTHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcccCChhHHHHHHHHHHHHHHHHHhcc
Confidence 334677 99999999999999999999999999998 8877643110000 00110 0010000000000000
Q ss_pred -HcCCCCCCCcccchhhhcHHHHHHHHHHHHH-hcCCCEEEEeC
Q 024413 132 -QFNLGPNGGILTSLNLFTTKFDEVISLIERR-ADHLDYVLVDT 173 (268)
Q Consensus 132 -~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al-~~~~~illlDe 173 (268)
.+.+.......+.+..+|+|++++..++++. ..+|+++|+||
T Consensus 242 ~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE 285 (365)
T 1lw7_A 242 HKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLK 285 (365)
T ss_dssp SSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEE
T ss_pred CCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECC
Confidence 0111111111122455677777777777766 36899999998
No 319
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.87 E-value=8.1e-09 Score=82.49 Aligned_cols=38 Identities=21% Similarity=0.325 Sum_probs=31.5
Q ss_pred CCeEEEEEecCCCCHHHHHHHHHhcccCccc--EEEEeccc
Q 024413 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNI--RGYVMNLD 106 (268)
Q Consensus 68 ~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g--~i~i~~~~ 106 (268)
+|..++|+||+|+|||||++++++...+ .| .+++.+.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~ 74 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAAS 74 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHH
Confidence 6788999999999999999999998876 45 66665543
No 320
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.86 E-value=5.3e-10 Score=102.33 Aligned_cols=130 Identities=14% Similarity=0.089 Sum_probs=72.8
Q ss_pred CCeEEEEEecCCCCHHHHHHHHHhcccCc-ccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccchh
Q 024413 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSR-NIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLN 146 (268)
Q Consensus 68 ~g~~v~iiG~~GsGKSTLl~~l~g~~~~~-~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 146 (268)
++..++++|.+|+|||||+|.|.|..... ...+. ....++++ .+. ...
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~-------~~~~~gtT----~~~----------------~~~---- 207 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKEFSDETENVIT-------TSHFPGTT----LDL----------------IDI---- 207 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCE-------EECCC--------CE----------------EEE----
T ss_pred ccceEEEecCCCCChhHHHHHHHhhhcccccccee-------cCCCCCee----cce----------------EEE----
Confidence 46789999999999999999999974221 10110 11122221 000 000
Q ss_pred hhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhh--hhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHH
Q 024413 147 LFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFT--WSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYAC 224 (268)
Q Consensus 147 ~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~--~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~ 224 (268)
..+..+.|+||||+.+... .......+...+.....+.++|++|+........... .
T Consensus 208 ----------------~~~~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-----~ 266 (368)
T 3h2y_A 208 ----------------PLDEESSLYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLAR-----F 266 (368)
T ss_dssp ----------------ESSSSCEEEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEE-----E
T ss_pred ----------------EecCCeEEEeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEE-----E
Confidence 0123589999999977531 1122223333333455789999999843321111110 1
Q ss_pred HHHHhhCCCceeeecCCCcCChhhh
Q 024413 225 SILYKTRLPLVLAFNKTDVAQHEFA 249 (268)
Q Consensus 225 ~~l~~~~~p~ilV~NK~Dl~~~~~~ 249 (268)
+.+...+.|+++|+||+|.+...+.
T Consensus 267 d~l~~~~~~~~~v~nk~d~~~~~~~ 291 (368)
T 3h2y_A 267 DYVSGGRRAFTCHFSNRLTIHRTKL 291 (368)
T ss_dssp EEEESSSEEEEEEECTTSCEEEEEH
T ss_pred EEecCCCceEEEEecCccccccccH
Confidence 2223456899999999999765433
No 321
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.85 E-value=2.9e-10 Score=100.81 Aligned_cols=110 Identities=12% Similarity=-0.044 Sum_probs=68.5
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCcc---cEEEE-ecccCCCCCcccccc----------------cchhhHHH
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRN---IRGYV-MNLDPAVMTLPFAAN----------------IDIRDTIR 125 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~---g~i~i-~~~~~~~~~~~~~~~----------------~~~~~~~~ 125 (268)
..++.+++|+|++|||||||++.|.+.+.+.. ..+.+ .+.+..... ....+ -...+...
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l~~~~g~p~a~d~~~ 106 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTH-EDQLKLNEQFKNNKLLQGRGLPGTHDMKL 106 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGGGSSSCSTTSBCHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCCh-HHHHHHhccccccchhhhccCcchhHHHH
Confidence 34678999999999999999999999987642 23434 444332211 00001 11123445
Q ss_pred HHHHHHHcCCC------CCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 024413 126 YKEVMKQFNLG------PNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQ 176 (268)
Q Consensus 126 ~~~~l~~~~l~------~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~ 176 (268)
..+.++.+.-+ .......+-..+||||+||+.++++...+|+++|+|++..
T Consensus 107 l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~ 163 (290)
T 1odf_A 107 LQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFL 163 (290)
T ss_dssp HHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESST
T ss_pred HHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccc
Confidence 55666666443 1111223356799999999888632222899999999976
No 322
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.85 E-value=6e-09 Score=97.42 Aligned_cols=42 Identities=12% Similarity=0.031 Sum_probs=39.4
Q ss_pred ccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecc
Q 024413 64 NFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNL 105 (268)
Q Consensus 64 ~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~ 105 (268)
..+.+|++++|+|+||||||||+++|+|+..++.|.+.+.|.
T Consensus 152 l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~ 193 (438)
T 2dpy_A 152 LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGE 193 (438)
T ss_dssp SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESC
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEece
Confidence 348899999999999999999999999999999999999887
No 323
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.84 E-value=2.7e-10 Score=104.30 Aligned_cols=128 Identities=14% Similarity=0.087 Sum_probs=71.9
Q ss_pred CCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccchhh
Q 024413 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNL 147 (268)
Q Consensus 68 ~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 147 (268)
++..++++|.+|+|||||+|.|.+......+.+.+ ...++.+.- ... .
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~-------~~~~gtT~~-~~~-------------------~----- 208 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEEATGKGNVITT-------SYFPGTTLD-MIE-------------------I----- 208 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEE-------EECTTSSCE-EEE-------------------E-----
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhhccCCccceee-------cCCCCeEEe-eEE-------------------E-----
Confidence 46679999999999999999999973221111111 112221100 000 0
Q ss_pred hcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhh--hhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHH
Q 024413 148 FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFT--WSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (268)
Q Consensus 148 lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~--~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~ 225 (268)
..+..+.|+||||+.+... .......+...+.....+.++|++|+....-...... .+
T Consensus 209 ---------------~~~~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-----l~ 268 (369)
T 3ec1_A 209 ---------------PLESGATLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLAR-----LD 268 (369)
T ss_dssp ---------------ECSTTCEEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEE-----EE
T ss_pred ---------------EeCCCeEEEeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEE-----EE
Confidence 0133589999999976531 1111122222233355799999999943321111100 11
Q ss_pred HHHhhCCCceeeecCCCcCChh
Q 024413 226 ILYKTRLPLVLAFNKTDVAQHE 247 (268)
Q Consensus 226 ~l~~~~~p~ilV~NK~Dl~~~~ 247 (268)
.+.....|+++|+||+|.+...
T Consensus 269 ~l~~~~~~~~~v~~k~d~~~~~ 290 (369)
T 3ec1_A 269 YIKGGRRSFVCYMANELTVHRT 290 (369)
T ss_dssp EEESSSEEEEEEECTTSCEEEE
T ss_pred EccCCCceEEEEecCCcccccc
Confidence 2224567999999999987654
No 324
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.83 E-value=1.2e-09 Score=88.26 Aligned_cols=42 Identities=17% Similarity=0.196 Sum_probs=38.0
Q ss_pred cccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccC
Q 024413 65 FKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP 107 (268)
Q Consensus 65 ~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~ 107 (268)
.+++|++++|+||||||||||+++|+|.. |++|.|.+.+.+.
T Consensus 29 ~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i 70 (158)
T 1htw_A 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTL 70 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTC
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEee
Confidence 36899999999999999999999999999 9999998877654
No 325
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.80 E-value=2.6e-09 Score=96.96 Aligned_cols=42 Identities=14% Similarity=0.032 Sum_probs=38.8
Q ss_pred cccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEeccc
Q 024413 65 FKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLD 106 (268)
Q Consensus 65 ~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~ 106 (268)
.+.+|++++|+|+||||||||+++|+|+..++.|.+.+.|.+
T Consensus 67 ~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~ 108 (347)
T 2obl_A 67 TCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGER 108 (347)
T ss_dssp CEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCC
T ss_pred eecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEeccc
Confidence 478999999999999999999999999999999998888754
No 326
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.80 E-value=9.9e-09 Score=97.96 Aligned_cols=41 Identities=20% Similarity=0.128 Sum_probs=38.3
Q ss_pred ccCCeEEEEEecCCCCHHHHHHH--HHhcccCcccEEEEeccc
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHR--LVCHTQSRNIRGYVMNLD 106 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~--l~g~~~~~~g~i~i~~~~ 106 (268)
+++|++++|+||||||||||+++ +.|..++.+|.+++.+.+
T Consensus 36 i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~ 78 (525)
T 1tf7_A 36 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE 78 (525)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 78999999999999999999999 689999899999998876
No 327
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.76 E-value=1.2e-08 Score=85.91 Aligned_cols=29 Identities=28% Similarity=0.456 Sum_probs=24.7
Q ss_pred CCeEEEEEecCCCCHHHHHHHHHhcccCc
Q 024413 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSR 96 (268)
Q Consensus 68 ~g~~v~iiG~~GsGKSTLl~~l~g~~~~~ 96 (268)
+..+++|+|++|+|||||++.+++.....
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~ 65 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDK 65 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 35788999999999999999999876544
No 328
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.76 E-value=5.8e-08 Score=82.29 Aligned_cols=99 Identities=15% Similarity=0.176 Sum_probs=57.9
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhc--ccC-----cccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCC
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCH--TQS-----RNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPN 138 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~--~~~-----~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 138 (268)
+++|.+++|+||||||||||++.|++. ..+ ..+.+++.+.+... ..++.+.++.+++.+.
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~-------------~~~~~~~~~~~g~~~~ 87 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFR-------------PERLLAVAERYGLSGS 87 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCC-------------HHHHHHHHHHTTCCHH
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcC-------------HHHHHHHHHHcCCCHH
Confidence 788999999999999999999999994 443 46777776644210 1112222333443310
Q ss_pred ---CCcccchhhhcHHHHH-HHHHHHHHh--cCCCEEEEeCCCCcc
Q 024413 139 ---GGILTSLNLFTTKFDE-VISLIERRA--DHLDYVLVDTPGQIE 178 (268)
Q Consensus 139 ---~~~~~~~~~lS~G~~q-r~~ia~al~--~~~~illlDePG~~~ 178 (268)
.... ....++..+.. .+..+..++ .+|+++++|+|+...
T Consensus 88 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~ 132 (243)
T 1n0w_A 88 DVLDNVA-YARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALY 132 (243)
T ss_dssp HHHHTEE-EEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGG
T ss_pred HHhhCeE-EEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHH
Confidence 0000 01223444332 233233332 589999999998754
No 329
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.75 E-value=8.8e-08 Score=87.53 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=21.0
Q ss_pred EEEEEecCCCCHHHHHHHHHhcc
Q 024413 71 IIIVVGMAGSGKTTFMHRLVCHT 93 (268)
Q Consensus 71 ~v~iiG~~GsGKSTLl~~l~g~~ 93 (268)
.++|+|++|+|||||+|+|++..
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999974
No 330
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=98.71 E-value=2.8e-08 Score=79.40 Aligned_cols=64 Identities=16% Similarity=0.158 Sum_probs=41.6
Q ss_pred chhhhcHHHHHHHHHH------HHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcC
Q 024413 144 SLNLFTTKFDEVISLI------ERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 144 ~~~~lS~G~~qr~~ia------~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
.+..|||||+||+++| ++++.+|+++|+|||+..-+.........+...+......+++..+|.
T Consensus 54 ~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~ 123 (148)
T 1f2t_B 54 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE 123 (148)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG
T ss_pred ChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH
Confidence 3889999999999876 889999999999999875432222222223333323334455555553
No 331
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.71 E-value=4e-07 Score=84.90 Aligned_cols=155 Identities=21% Similarity=0.240 Sum_probs=83.2
Q ss_pred cCCeEEEEEecCCCCHHHHHHHHHhcccCc-ccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccch
Q 024413 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSR-NIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (268)
Q Consensus 67 ~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~-~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 145 (268)
.+..+++++|++|+||||+...|+..+... +.++.+.+.|+.... . .+. ...+.+..++.-.....
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~---a----~~q---l~~~~~~~~l~v~~~~~--- 164 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPA---A----IKQ---LETLAEQVGVDFFPSDV--- 164 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTT---H----HHH---HHHHHHHHTCEECCCCS---
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCcc---H----HHH---HHhhcccCCeeEEeCCC---
Confidence 356789999999999999999999887766 667777666653211 0 010 11112233332111000
Q ss_pred hhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHH
Q 024413 146 NLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACS 225 (268)
Q Consensus 146 ~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~ 225 (268)
..+....-+-.+..+-..+.+++|+||||..... ......+........++.+++|+|+..+. +.... ..
T Consensus 165 -~~dp~~i~~~~l~~~~~~~~D~VIIDTpG~l~~~--~~l~~~L~~~~~~~~p~~vllVvda~~g~---~~~~~----~~ 234 (433)
T 2xxa_A 165 -GQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVD--EAMMDEIKQVHASINPVETLFVVDAMTGQ---DAANT----AK 234 (433)
T ss_dssp -SSCHHHHHHHHHHHHHHTTCSEEEEECCCCCTTC--HHHHHHHHHHHHHSCCSEEEEEEETTBCT---THHHH----HH
T ss_pred -CCCHHHHHHHHHHHHHhCCCCEEEEECCCccccc--HHHHHHHHHHHHhhcCcceeEEeecchhH---HHHHH----HH
Confidence 0111111111222222357899999999976531 12222222222234579999999996542 22211 11
Q ss_pred HHHhhCCC-ceeeecCCCcCC
Q 024413 226 ILYKTRLP-LVLAFNKTDVAQ 245 (268)
Q Consensus 226 ~l~~~~~p-~ilV~NK~Dl~~ 245 (268)
... ...+ .-+|+||+|...
T Consensus 235 ~f~-~~l~i~gvVlnK~D~~~ 254 (433)
T 2xxa_A 235 AFN-EALPLTGVVLTKVDGDA 254 (433)
T ss_dssp HHH-HHSCCCCEEEECTTSSS
T ss_pred HHh-ccCCCeEEEEecCCCCc
Confidence 121 2345 457999999754
No 332
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.69 E-value=8.4e-09 Score=84.16 Aligned_cols=33 Identities=18% Similarity=0.149 Sum_probs=28.4
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCccc
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNI 98 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g 98 (268)
..+|..++|+||||+|||||++++++...+..|
T Consensus 35 ~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g 67 (180)
T 3ec2_A 35 PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKG 67 (180)
T ss_dssp GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSC
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcC
Confidence 456889999999999999999999998875544
No 333
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.67 E-value=6.8e-08 Score=88.97 Aligned_cols=28 Identities=25% Similarity=0.385 Sum_probs=25.7
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcc
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHT 93 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~ 93 (268)
+..|.+++|+|+||||||||+|+|+|..
T Consensus 17 v~~g~~vgiVG~pnaGKSTL~n~Ltg~~ 44 (392)
T 1ni3_A 17 PGNNLKTGIVGMPNVGKSTFFRAITKSV 44 (392)
T ss_dssp SSSCCEEEEEECSSSSHHHHHHHHHHST
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 6778999999999999999999999943
No 334
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.63 E-value=5e-08 Score=88.91 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=22.2
Q ss_pred CeEEEEEecCCCCHHHHHHHHHhcc
Q 024413 69 PVIIIVVGMAGSGKTTFMHRLVCHT 93 (268)
Q Consensus 69 g~~v~iiG~~GsGKSTLl~~l~g~~ 93 (268)
+..++|+|.+|+|||||+|+|++..
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~ 26 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAG 26 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Confidence 3578999999999999999999854
No 335
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.60 E-value=6.8e-08 Score=88.95 Aligned_cols=28 Identities=29% Similarity=0.413 Sum_probs=24.0
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcc
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHT 93 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~ 93 (268)
...+..++|+|+||+|||||+|+|+|..
T Consensus 19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~~ 46 (396)
T 2ohf_A 19 FGTSLKIGIVGLPNVGKSTFFNVLTNSQ 46 (396)
T ss_dssp SSSCCCEEEECCSSSSHHHHHHHHHC--
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 5667889999999999999999999864
No 336
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.54 E-value=3.3e-08 Score=83.98 Aligned_cols=42 Identities=17% Similarity=0.271 Sum_probs=35.3
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccC--cccEEEEecccC
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQS--RNIRGYVMNLDP 107 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~--~~g~i~i~~~~~ 107 (268)
.++|.+++|+||||||||||+++|+|..+| ..|.+.+.+.++
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~ 56 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQP 56 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCC
Confidence 578999999999999999999999999985 678787776654
No 337
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.52 E-value=3.1e-07 Score=84.84 Aligned_cols=99 Identities=14% Similarity=0.257 Sum_probs=56.6
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHH--HhcccCc-----ccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCC
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRL--VCHTQSR-----NIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPN 138 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l--~g~~~~~-----~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 138 (268)
+++|.++.|+||||||||||++.| .+..+++ .+.+|+.+.+.. ...++..+.+.+++.+.
T Consensus 175 I~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~-------------~~~rl~~~a~~~gl~~~ 241 (400)
T 3lda_A 175 VETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTF-------------RPVRLVSIAQRFGLDPD 241 (400)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCC-------------CHHHHHHHHHHTTCCHH
T ss_pred cCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCcc-------------CHHHHHHHHHHcCCChH
Confidence 789999999999999999999955 4555543 337777654421 11223334455555421
Q ss_pred C---CcccchhhhcH-HHHHHHHHHHHH--hcCCCEEEEeCCCCcc
Q 024413 139 G---GILTSLNLFTT-KFDEVISLIERR--ADHLDYVLVDTPGQIE 178 (268)
Q Consensus 139 ~---~~~~~~~~lS~-G~~qr~~ia~al--~~~~~illlDePG~~~ 178 (268)
. ... ....++. .+.+.+..+..+ ..+|+++++|+|....
T Consensus 242 ~vleni~-~~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~ 286 (400)
T 3lda_A 242 DALNNVA-YARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALY 286 (400)
T ss_dssp HHHHTEE-EEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGC
T ss_pred hHhhcEE-EeccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhC
Confidence 0 001 0111222 223333333332 2479999999997653
No 338
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.52 E-value=2.9e-08 Score=88.59 Aligned_cols=38 Identities=13% Similarity=0.129 Sum_probs=25.3
Q ss_pred cccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEE
Q 024413 65 FKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYV 102 (268)
Q Consensus 65 ~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i 102 (268)
.+.+|++++|+|+||||||||+|+|+|...+..|.+.+
T Consensus 169 ~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~ 206 (307)
T 1t9h_A 169 PHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISE 206 (307)
T ss_dssp GGGTTSEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHhcccccccccceee
Confidence 36689999999999999999999999999999998876
No 339
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.49 E-value=1.4e-06 Score=78.66 Aligned_cols=152 Identities=9% Similarity=0.028 Sum_probs=85.3
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHH-HcCCCCCCCcccc
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMK-QFNLGPNGGILTS 144 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~l~~~~~~~~~ 144 (268)
..+|..++|.|+||+|||||+..++......++.+.++.... + ...-...++. ..++... .+.
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEm-----s--------~~ql~~Rlls~~~~v~~~-~l~-- 106 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEM-----S--------AEQLALRALSDLTSINMH-DLE-- 106 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSS-----C--------HHHHHHHHHHHHHCCCHH-HHH--
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC-----C--------HHHHHHHHHHHhhCCCHH-HHh--
Confidence 789999999999999999999888876544444554432211 1 0011111111 1122110 111
Q ss_pred hhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchh-------hH
Q 024413 145 LNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMT-------FM 217 (268)
Q Consensus 145 ~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~-------~~ 217 (268)
-..||.++.+++..|...+.+.++.|.|+|+..- ...... .+.+......+-++|||.-..+.... ..
T Consensus 107 ~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si----~~i~~~-ir~l~~~~gg~~lIVIDyLqlm~~~~~~~~r~~ei 181 (338)
T 4a1f_A 107 SGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRI----EQIRLQ-LRKLKSQHKELGIAFIDYLQLMSGSKATKERHEQI 181 (338)
T ss_dssp HTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCH----HHHHHH-HHHHHHHCTTEEEEEEEEEECCCTHHHHHHCCCCH
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcH----HHHHHH-HHHHHHhcCCCCEEEEechHHhcCCCCCCChHHHH
Confidence 2358999999999999888889999999998631 112222 22333333245666677533222211 12
Q ss_pred HHHHHHHHH-HHhhCCCceeee
Q 024413 218 SNMLYACSI-LYKTRLPLVLAF 238 (268)
Q Consensus 218 ~~~~~~~~~-l~~~~~p~ilV~ 238 (268)
..+...+.. ....++|+|++.
T Consensus 182 ~~isr~LK~lAkel~vpVi~ls 203 (338)
T 4a1f_A 182 AEISRELKTLARELEIPIIALV 203 (338)
T ss_dssp HHHHHHHHHHHHHHTSCEEEEE
T ss_pred HHHHHHHHHHHHHcCCeEEEEE
Confidence 222222232 345788988873
No 340
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.49 E-value=3.7e-07 Score=92.18 Aligned_cols=121 Identities=12% Similarity=0.006 Sum_probs=71.8
Q ss_pred HHHHHHhcccCcccEEEEecccCCC-------CCcccccccc--------h----hhHHHHHHHHHHcCCCCCCCcccch
Q 024413 85 FMHRLVCHTQSRNIRGYVMNLDPAV-------MTLPFAANID--------I----RDTIRYKEVMKQFNLGPNGGILTSL 145 (268)
Q Consensus 85 Ll~~l~g~~~~~~g~i~i~~~~~~~-------~~~~~~~~~~--------~----~~~~~~~~~l~~~~l~~~~~~~~~~ 145 (268)
...|..+.+.+..+.|++.|.++.. ..+.+..++. . .......+.+..++|.... ....+
T Consensus 384 C~~C~g~rl~~~~~~V~i~G~~i~~~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~vgL~~l~-l~r~~ 462 (916)
T 3pih_A 384 CSVCGGRRLNREALSVKINGLNIHEFTELSISEELEFLKNLNLTEREREIVGELLKEIEKRLEFLVDVGLEYLT-LSRSA 462 (916)
T ss_dssp CTTTCSCCBCTTGGGEEETTEEHHHHHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHHHHHHHTTTCTTCB-TTSBG
T ss_pred chhcccccCChHhcCcEECCccHHHhhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHHHHHHHHcCCcccc-ccCCc
Confidence 3445555667778888888865320 0011111110 0 1122344567778886431 22348
Q ss_pred hhhcHHHHHHHHHHHHHhcCCC--EEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEc
Q 024413 146 NLFTTKFDEVISLIERRADHLD--YVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVD 206 (268)
Q Consensus 146 ~~lS~G~~qr~~ia~al~~~~~--illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD 206 (268)
.+|||||+||++||++|..+|+ ++|+|||+.............+.+.++.....+|+..||
T Consensus 463 ~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd 525 (916)
T 3pih_A 463 TTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHD 525 (916)
T ss_dssp GGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCC
T ss_pred ccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 9999999999999999999877 999999987654333333444444444433345554455
No 341
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.46 E-value=3.9e-08 Score=92.76 Aligned_cols=44 Identities=18% Similarity=0.065 Sum_probs=39.5
Q ss_pred cccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccC
Q 024413 63 INFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP 107 (268)
Q Consensus 63 ~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~ 107 (268)
...+++ ++++|+||||||||||+++|+|+..|++|.+.+.|.+.
T Consensus 24 sl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~ 67 (483)
T 3euj_A 24 TFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTE 67 (483)
T ss_dssp EEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTS
T ss_pred EEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEc
Confidence 334777 99999999999999999999999999999999988764
No 342
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.45 E-value=1.6e-06 Score=69.94 Aligned_cols=37 Identities=16% Similarity=0.264 Sum_probs=30.5
Q ss_pred cCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccC
Q 024413 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP 107 (268)
Q Consensus 67 ~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~ 107 (268)
.+|.+++|+|+|||||||+++.|++.. |.+++++.+.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccc
Confidence 468899999999999999999999865 6667765443
No 343
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.45 E-value=1e-06 Score=73.04 Aligned_cols=38 Identities=26% Similarity=0.290 Sum_probs=31.6
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccC
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP 107 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~ 107 (268)
.++|.+++|+|+||||||||+++|++.+ |.+++++.+.
T Consensus 26 ~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~ 63 (200)
T 4eun_A 26 GEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAF 63 (200)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGG
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEccccc
Confidence 4678999999999999999999999976 7777776554
No 344
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.39 E-value=1.1e-06 Score=78.72 Aligned_cols=35 Identities=20% Similarity=0.130 Sum_probs=26.0
Q ss_pred EEEEecCCCCHHHHHHHHHh-cccCcccEEEEeccc
Q 024413 72 IIVVGMAGSGKTTFMHRLVC-HTQSRNIRGYVMNLD 106 (268)
Q Consensus 72 v~iiG~~GsGKSTLl~~l~g-~~~~~~g~i~i~~~~ 106 (268)
+.|.||+|+||||++++|++ +..+..|.+.+.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~ 74 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQ 74 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC-------
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEeccee
Confidence 89999999999999999999 678888888776644
No 345
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.38 E-value=2.1e-07 Score=82.84 Aligned_cols=36 Identities=28% Similarity=0.306 Sum_probs=34.2
Q ss_pred cCCeEEEEEecCCCCHHHHHHHHHhccc--CcccEEEE
Q 024413 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQ--SRNIRGYV 102 (268)
Q Consensus 67 ~~g~~v~iiG~~GsGKSTLl~~l~g~~~--~~~g~i~i 102 (268)
.+|.+++|+|+||||||||+++|+|++. |++|.+.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~v 115 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVEL 115 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEE
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEE
Confidence 7789999999999999999999999988 89999998
No 346
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.37 E-value=1.2e-07 Score=78.83 Aligned_cols=41 Identities=24% Similarity=0.253 Sum_probs=35.0
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEE--EEecccC
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRG--YVMNLDP 107 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i--~i~~~~~ 107 (268)
.++|.+++|+|+|||||||+++.|++.+. ..|.+ ++++.+.
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNV 64 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchh
Confidence 57899999999999999999999999887 66766 7776543
No 347
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.37 E-value=1.6e-07 Score=83.44 Aligned_cols=42 Identities=17% Similarity=0.148 Sum_probs=29.9
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEE---ecccC
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYV---MNLDP 107 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i---~~~~~ 107 (268)
...|.+++|+||||||||||+|+|+|+..|+.|.+.+ .|.+.
T Consensus 166 ~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~ 210 (301)
T 1u0l_A 166 YLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHT 210 (301)
T ss_dssp HHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------C
T ss_pred HhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCc
Confidence 5678999999999999999999999999999999988 66543
No 348
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.35 E-value=1.4e-07 Score=78.58 Aligned_cols=27 Identities=26% Similarity=0.566 Sum_probs=23.6
Q ss_pred CCeEEEEEecCCCCHHHHHHHHHhccc
Q 024413 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQ 94 (268)
Q Consensus 68 ~g~~v~iiG~~GsGKSTLl~~l~g~~~ 94 (268)
+|.+++|+||||||||||+++|+|+++
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 578899999999999999999999875
No 349
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.35 E-value=1.3e-06 Score=88.23 Aligned_cols=77 Identities=12% Similarity=0.004 Sum_probs=51.9
Q ss_pred HHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCC--CEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEc
Q 024413 129 VMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHL--DYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVD 206 (268)
Q Consensus 129 ~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~--~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD 206 (268)
.+..+||+.. .....+.+|||||+||++||+++..+| +++|||||+.............+.+.++.....+|+.-+|
T Consensus 487 ~L~~vGL~~l-~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHd 565 (972)
T 2r6f_A 487 FLQNVGLDYL-TLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 565 (972)
T ss_dssp HHHHHTCTTS-BSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCC
T ss_pred HhhhCCCCcc-ccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 5788898742 222348999999999999999999984 8999999988654233333444445554433344444343
No 350
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.34 E-value=1.7e-07 Score=76.99 Aligned_cols=28 Identities=25% Similarity=0.519 Sum_probs=24.9
Q ss_pred CeEEEEEecCCCCHHHHHHHHHhcccCc
Q 024413 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSR 96 (268)
Q Consensus 69 g~~v~iiG~~GsGKSTLl~~l~g~~~~~ 96 (268)
|.+++|+||||||||||+++|+|..++.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~ 28 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDS 28 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCcc
Confidence 4678999999999999999999998743
No 351
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=98.33 E-value=1.5e-06 Score=71.16 Aligned_cols=36 Identities=11% Similarity=-0.062 Sum_probs=31.0
Q ss_pred chhhhcHHHHHHHHHHHHHhc----CCCEEEEeCCCCcch
Q 024413 144 SLNLFTTKFDEVISLIERRAD----HLDYVLVDTPGQIEI 179 (268)
Q Consensus 144 ~~~~lS~G~~qr~~ia~al~~----~~~illlDePG~~~~ 179 (268)
.+..||||||||+++|++++. .|+++|+|||....+
T Consensus 61 ~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD 100 (173)
T 3kta_B 61 RIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLD 100 (173)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCC
T ss_pred ccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCC
Confidence 378899999999999999974 469999999987543
No 352
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.33 E-value=3.2e-07 Score=85.22 Aligned_cols=42 Identities=29% Similarity=0.229 Sum_probs=38.1
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccC
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP 107 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~ 107 (268)
..+|.+++|+||||||||||+++|+|.+.+++|.|.+.+.++
T Consensus 164 ~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~i 205 (418)
T 1p9r_A 164 KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPI 205 (418)
T ss_dssp TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSC
T ss_pred HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccc
Confidence 467899999999999999999999999999999999887654
No 353
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.32 E-value=6.4e-07 Score=78.43 Aligned_cols=38 Identities=16% Similarity=0.138 Sum_probs=30.7
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccC
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP 107 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~ 107 (268)
.++| ++|+||||+|||||+++|+|...+ +.+++.+.+.
T Consensus 43 ~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l 80 (274)
T 2x8a_A 43 TPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPEL 80 (274)
T ss_dssp CCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTT
T ss_pred CCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHH
Confidence 4455 899999999999999999998766 5777766543
No 354
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.32 E-value=1.6e-06 Score=86.83 Aligned_cols=77 Identities=14% Similarity=0.027 Sum_probs=52.7
Q ss_pred HHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCC--CEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEc
Q 024413 129 VMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADHL--DYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVD 206 (268)
Q Consensus 129 ~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~--~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD 206 (268)
.+..+||... .....+.+|||||+||++||++|..+| .++|||||+.............+.+.++.....+|+.-||
T Consensus 362 ~L~~vGL~~l-~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHd 440 (842)
T 2vf7_A 362 VLLHLGLGYL-GLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHD 440 (842)
T ss_dssp HHHHTTCTTS-BTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCC
T ss_pred HHHhCCCCcC-CccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCC
Confidence 5677888632 223348999999999999999999998 4999999988654333444445555555443344444343
No 355
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.31 E-value=2.9e-07 Score=76.01 Aligned_cols=29 Identities=28% Similarity=0.423 Sum_probs=25.9
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhccc
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQ 94 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~ 94 (268)
..+|.+++|+||||||||||+++|+|..+
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 45789999999999999999999999864
No 356
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.29 E-value=2.1e-07 Score=78.98 Aligned_cols=35 Identities=26% Similarity=0.405 Sum_probs=22.0
Q ss_pred cccccccCCeEEEEEecCCCCHHHHHHHHH-hcccC
Q 024413 61 SSINFKRKPVIIIVVGMAGSGKTTFMHRLV-CHTQS 95 (268)
Q Consensus 61 ~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~-g~~~~ 95 (268)
+..+.+++|.+++|+||||||||||+++|+ |..++
T Consensus 19 ~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 19 PGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp ---CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred CCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 344558899999999999999999999999 98744
No 357
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.28 E-value=1.4e-06 Score=88.20 Aligned_cols=66 Identities=8% Similarity=-0.094 Sum_probs=46.4
Q ss_pred HHHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHhcC--CCEEEEeCCCCcchhhhhhHHHHHHHHHhc
Q 024413 129 VMKQFNLGPNGGILTSLNLFTTKFDEVISLIERRADH--LDYVLVDTPGQIEIFTWSASGAIITEAFAS 195 (268)
Q Consensus 129 ~l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~--~~illlDePG~~~~~~~~~~~~~i~~~~~~ 195 (268)
.+..+||... .....+.+|||||+||++||+++..+ |+++|||||+.............+.+.++.
T Consensus 504 ~L~~vGL~~l-~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~ 571 (993)
T 2ygr_A 504 FLLDVGLEYL-SLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRD 571 (993)
T ss_dssp HHHHHTGGGS-CTTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHhhCCCCcc-ccCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHH
Confidence 4677888632 22334899999999999999999998 489999999986542333333344444443
No 358
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.26 E-value=5.1e-07 Score=85.92 Aligned_cols=41 Identities=22% Similarity=0.208 Sum_probs=38.1
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEeccc
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLD 106 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~ 106 (268)
++.|..++|+||||||||||+++|+|+.+++.|.+.+.+..
T Consensus 257 v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~ 297 (511)
T 2oap_1 257 IEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTR 297 (511)
T ss_dssp HHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSC
T ss_pred HhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcc
Confidence 57888999999999999999999999999999999998764
No 359
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.24 E-value=4.7e-07 Score=74.14 Aligned_cols=36 Identities=28% Similarity=0.337 Sum_probs=30.3
Q ss_pred CeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccC
Q 024413 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP 107 (268)
Q Consensus 69 g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~ 107 (268)
|.+++|+||||||||||++.|++ +..|.+++++.+.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~ 37 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDII 37 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccch
Confidence 56899999999999999999987 4567888877543
No 360
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.22 E-value=5.5e-07 Score=79.99 Aligned_cols=41 Identities=22% Similarity=0.261 Sum_probs=32.4
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEE---ecccC
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYV---MNLDP 107 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i---~~~~~ 107 (268)
...|.+++|+|+||||||||+|+|+ ...++.|.+.+ .|.+.
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~ 205 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHT 205 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------C
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCc
Confidence 5678999999999999999999999 99999999988 55543
No 361
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=98.21 E-value=1.9e-05 Score=70.32 Aligned_cols=97 Identities=12% Similarity=0.137 Sum_probs=57.9
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHH-HcCCCCCCCcccc
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMK-QFNLGPNGGILTS 144 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~l~~~~~~~~~ 144 (268)
+++|.++.|.|++|+|||||+..++...-.....+.+..... ....-...++. ..++... .....
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~-------------s~~~l~~R~~~~~~~i~~~-~l~~~ 130 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEM-------------GKKENIKRLIVTAGSINAQ-KIKAA 130 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSS-------------CHHHHHHHHHHHHTTCCHH-HHHSC
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCC-------------CHHHHHHHHHHHHcCCCHH-HHhcC
Confidence 789999999999999999999888754432222333221110 01111111111 1122210 00100
Q ss_pred hhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 024413 145 LNLFTTKFDEVISLIERRADHLDYVLVDTPGQ 176 (268)
Q Consensus 145 ~~~lS~G~~qr~~ia~al~~~~~illlDePG~ 176 (268)
-..||.++.+++..|...+.+.++.+.|+|+.
T Consensus 131 ~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~ 162 (315)
T 3bh0_A 131 RRDFASEDWGKLSMAIGEISNSNINIFDKAGQ 162 (315)
T ss_dssp HHHHCSSCHHHHHHHHHHHHTSCEEEECCSCC
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEECCCCC
Confidence 12288899999998888888889999999975
No 362
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.21 E-value=6.6e-07 Score=73.08 Aligned_cols=35 Identities=11% Similarity=0.169 Sum_probs=28.4
Q ss_pred CCeEEEEEecCCCCHHHHHHHHHhcccC-cccEEEE
Q 024413 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQS-RNIRGYV 102 (268)
Q Consensus 68 ~g~~v~iiG~~GsGKSTLl~~l~g~~~~-~~g~i~i 102 (268)
+|.+++|+||||||||||++.|++..++ ..+.+..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ 39 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPH 39 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeec
Confidence 5789999999999999999999998753 3444433
No 363
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.18 E-value=1.7e-06 Score=78.78 Aligned_cols=70 Identities=20% Similarity=0.284 Sum_probs=37.8
Q ss_pred CCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCC-------chhhHHHHHHHHHHHHh----hCCCc
Q 024413 166 LDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSAN-------PMTFMSNMLYACSILYK----TRLPL 234 (268)
Q Consensus 166 ~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~-------~~~~~~~~~~~~~~l~~----~~~p~ 234 (268)
..+.|||++|+..+.. ....++ ..+++++||+|.+.... ...+. .....+..+.. .+.|+
T Consensus 201 ~~l~i~Dt~Gq~~~r~------~w~~~f--~~~~~iIfv~dls~~dq~l~ed~~~n~~~-es~~~~~~i~~~~~~~~~pi 271 (362)
T 1zcb_A 201 VPFKMVDVGGQRSERK------RWFECF--DSVTSILFLVSSSEFDQVLMEDRQTNRLT-ESLNIFETIVNNRVFSNVSI 271 (362)
T ss_dssp EEEEEEEECC-------------CTTSC--TTCCEEEEEEETTCTTCEETTEEEEEHHH-HHHHHHHHHHTCGGGTTSEE
T ss_pred eEEEEEeccchhhhhh------hHHHHh--CCCCEEEEEEECccccccccccccccHHH-HHHHHHHHHhcchhhCCCCE
Confidence 3578999999965421 111111 34799999999975211 11111 11111223321 36899
Q ss_pred eeeecCCCcC
Q 024413 235 VLAFNKTDVA 244 (268)
Q Consensus 235 ilV~NK~Dl~ 244 (268)
|+|+||+|+.
T Consensus 272 ILv~NK~DL~ 281 (362)
T 1zcb_A 272 ILFLNKTDLL 281 (362)
T ss_dssp EEEEECHHHH
T ss_pred EEEEEChhhh
Confidence 9999999985
No 364
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.17 E-value=1.1e-06 Score=72.53 Aligned_cols=33 Identities=24% Similarity=0.400 Sum_probs=28.4
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCccc
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNI 98 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g 98 (268)
+.+|.+++|+|+|||||||+++.|++...++.+
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 567899999999999999999999999866443
No 365
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.16 E-value=1e-06 Score=73.24 Aligned_cols=42 Identities=24% Similarity=0.374 Sum_probs=36.5
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccC
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP 107 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~ 107 (268)
..++.+++|+|++|||||||++.|.+.+.+.+|.+.+.+.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 457899999999999999999999999988888888776554
No 366
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.14 E-value=7.6e-08 Score=82.26 Aligned_cols=38 Identities=21% Similarity=0.164 Sum_probs=29.6
Q ss_pred eEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccC
Q 024413 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP 107 (268)
Q Consensus 70 ~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~ 107 (268)
++++|+||||||||||+++|+|...|++|.+.+.+.+.
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~ 65 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTE 65 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC-------
T ss_pred cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEc
Confidence 67799999999999999999999999999998887654
No 367
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=98.12 E-value=7.8e-06 Score=67.26 Aligned_cols=135 Identities=16% Similarity=0.234 Sum_probs=75.6
Q ss_pred EEEEE-ecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccchhhhc
Q 024413 71 IIIVV-GMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFT 149 (268)
Q Consensus 71 ~v~ii-G~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~lS 149 (268)
+++|. +..|+||||+.-.|+......+.++.+.+.|+..... .+++..+.. ..-++
T Consensus 3 vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~------------------~~~~~~~~~-----~~~~~ 59 (206)
T 4dzz_A 3 VISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLT------------------NWSKAGKAA-----FDVFT 59 (206)
T ss_dssp EEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHH------------------HHHTTSCCS-----SEEEE
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHH------------------HHHhcCCCC-----CcEEe
Confidence 45666 6788999999999988776655677776665421100 011111100 11111
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHh
Q 024413 150 TKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK 229 (268)
Q Consensus 150 ~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~ 229 (268)
.+..+...+...+..+.+++|+|+|+..... ....+ ..+|.+++++...... .. .. ...+.+..
T Consensus 60 ~~~~~l~~~l~~l~~~yD~viiD~~~~~~~~--------~~~~l--~~ad~viiv~~~~~~~--~~-~~---~~~~~l~~ 123 (206)
T 4dzz_A 60 AASEKDVYGIRKDLADYDFAIVDGAGSLSVI--------TSAAV--MVSDLVIIPVTPSPLD--FS-AA---GSVVTVLE 123 (206)
T ss_dssp CCSHHHHHTHHHHTTTSSEEEEECCSSSSHH--------HHHHH--HHCSEEEEEECSCTTT--HH-HH---HHHHHHHT
T ss_pred cCcHHHHHHHHHhcCCCCEEEEECCCCCCHH--------HHHHH--HHCCEEEEEecCCHHH--HH-HH---HHHHHHHH
Confidence 1223333445556668899999999875431 11111 2279999999886543 22 11 11233332
Q ss_pred h-----CCCceeeecCCCcC
Q 024413 230 T-----RLPLVLAFNKTDVA 244 (268)
Q Consensus 230 ~-----~~p~ilV~NK~Dl~ 244 (268)
. +.++.+|+||+|..
T Consensus 124 ~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 124 AQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp TSCGGGCCEEEEEECSBCTT
T ss_pred HHHhCCCCcEEEEEeccCCC
Confidence 2 35678999999953
No 368
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.11 E-value=4.3e-05 Score=64.37 Aligned_cols=39 Identities=21% Similarity=0.330 Sum_probs=28.7
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhc-ccCcccEEEEec
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCH-TQSRNIRGYVMN 104 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~-~~~~~g~i~i~~ 104 (268)
+++|.+++|+|+||+|||||+..++.. .....+.+|+..
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 688999999999999999996666544 344345555543
No 369
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.09 E-value=7.8e-06 Score=76.43 Aligned_cols=109 Identities=13% Similarity=0.114 Sum_probs=61.1
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCccc-EEEEecccCCCCC-----------cccc----cccchhhHHHHHHH
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNI-RGYVMNLDPAVMT-----------LPFA----ANIDIRDTIRYKEV 129 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g-~i~i~~~~~~~~~-----------~~~~----~~~~~~~~~~~~~~ 129 (268)
+++|.+++|.|+||+|||||+..+++...+..| .+.+......... ++.. ..+...+..++.+.
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~l~~r~~~~~~~~~~~~l~~g~l~~~~~~~~~~a 279 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMRMLCAEGNINAQNLRTGKLTPEDWGKLTMA 279 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHHHHHHHHHHHHTCCHHHHHTSCCCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcCCCCHHHHHHHHHH
Confidence 789999999999999999999999988765434 5555443321100 0000 00111122233333
Q ss_pred HHHcCCCCCCCcccchhhhcHHHHHHHHHHHHHh--cCCCEEEEeCCCCcc
Q 024413 130 MKQFNLGPNGGILTSLNLFTTKFDEVISLIERRA--DHLDYVLVDTPGQIE 178 (268)
Q Consensus 130 l~~~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~--~~~~illlDePG~~~ 178 (268)
+..++..+ .. ......+|.++.+ +.++.+. .+++++++|++....
T Consensus 280 ~~~l~~~~-l~-i~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~ 326 (454)
T 2r6a_A 280 MGSLSNAG-IY-IDDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQ 326 (454)
T ss_dssp HHHHHSSC-EE-EECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSC
T ss_pred HHHHhcCC-EE-EECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhc
Confidence 33332211 11 1113456777765 3444444 578899999887654
No 370
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.08 E-value=5.2e-07 Score=77.91 Aligned_cols=35 Identities=26% Similarity=0.235 Sum_probs=32.2
Q ss_pred cCCeEEEEEecCCCCHHHHHHHHH---hcccCcccEEE
Q 024413 67 RKPVIIIVVGMAGSGKTTFMHRLV---CHTQSRNIRGY 101 (268)
Q Consensus 67 ~~g~~v~iiG~~GsGKSTLl~~l~---g~~~~~~g~i~ 101 (268)
.+|.+++|+||+||||||+++.|+ |+..++.|.++
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~ 62 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY 62 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence 568899999999999999999999 99888888877
No 371
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.07 E-value=9.2e-07 Score=75.70 Aligned_cols=37 Identities=24% Similarity=0.241 Sum_probs=32.6
Q ss_pred CCeEEEEEecCCCCHHHHHHHHH---hcccCcccEEEEec
Q 024413 68 KPVIIIVVGMAGSGKTTFMHRLV---CHTQSRNIRGYVMN 104 (268)
Q Consensus 68 ~g~~v~iiG~~GsGKSTLl~~l~---g~~~~~~g~i~i~~ 104 (268)
++.+++|+|+||||||||+++|+ |+..++.|.+.+.+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~ 65 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLREN 65 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHH
Confidence 57899999999999999999999 99888887776654
No 372
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.06 E-value=2.2e-06 Score=72.69 Aligned_cols=37 Identities=22% Similarity=0.368 Sum_probs=32.2
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEeccc
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLD 106 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~ 106 (268)
.++|.+++|.|++|||||||++.|++. .|.+.+.+.+
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~ 53 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEP 53 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCT
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecC
Confidence 578999999999999999999999997 6777776654
No 373
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.04 E-value=2.6e-06 Score=71.13 Aligned_cols=29 Identities=21% Similarity=0.428 Sum_probs=26.8
Q ss_pred cCCeEEEEEecCCCCHHHHHHHHHhcccC
Q 024413 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQS 95 (268)
Q Consensus 67 ~~g~~v~iiG~~GsGKSTLl~~l~g~~~~ 95 (268)
++|.+++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 57899999999999999999999998865
No 374
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.03 E-value=3.2e-05 Score=69.95 Aligned_cols=93 Identities=16% Similarity=0.231 Sum_probs=54.9
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccch
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 145 (268)
+++|.++.|.|+||+|||||+..++.......+.+.+.+..... . .. ..+.+++....-...
T Consensus 58 l~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~-----~-------~~----~a~~lG~~~~~l~i~-- 119 (349)
T 2zr9_A 58 LPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHAL-----D-------PE----YAKKLGVDTDSLLVS-- 119 (349)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC-----C-------HH----HHHHTTCCGGGCEEE--
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCc-----C-------HH----HHHHcCCCHHHeEEe--
Confidence 56899999999999999999888886655444444433322110 0 00 123445442211110
Q ss_pred hhhcHHHHHHHHHHHHHhc--CCCEEEEeCCCCcc
Q 024413 146 NLFTTKFDEVISLIERRAD--HLDYVLVDTPGQIE 178 (268)
Q Consensus 146 ~~lS~G~~qr~~ia~al~~--~~~illlDePG~~~ 178 (268)
...+. .+.+.++++++. +|+++++|+++...
T Consensus 120 ~~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 120 QPDTG--EQALEIADMLVRSGALDIIVIDSVAALV 152 (349)
T ss_dssp CCSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCC
T ss_pred cCCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhc
Confidence 11122 344566776654 59999999998764
No 375
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.99 E-value=6.9e-06 Score=72.19 Aligned_cols=29 Identities=21% Similarity=0.525 Sum_probs=24.6
Q ss_pred cCCeEEEEEecCCCCHHHHHHHHHhcccC
Q 024413 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQS 95 (268)
Q Consensus 67 ~~g~~v~iiG~~GsGKSTLl~~l~g~~~~ 95 (268)
..+..++++|.+|+|||||+|.|.|....
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~ 146 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIA 146 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCcee
Confidence 34568999999999999999999986543
No 376
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=97.97 E-value=3.3e-05 Score=69.69 Aligned_cols=73 Identities=14% Similarity=0.146 Sum_probs=42.0
Q ss_pred CCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCc-------CCchhhHHHHHHHHHHHH----hhCCC
Q 024413 165 HLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS-------ANPMTFMSNMLYACSILY----KTRLP 233 (268)
Q Consensus 165 ~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~-------~~~~~~~~~~~~~~~~l~----~~~~p 233 (268)
+..+.|||++|+..+.. ....++ ..+++++||+|.+.- .+...+. .....+..+. ..+.|
T Consensus 160 ~v~l~iwDtaGQe~~R~------~w~~yy--~~a~~iIfV~diS~ydq~l~e~~~~nr~~-es~~~~~~i~~~~~~~~~p 230 (340)
T 4fid_A 160 DIPFHLIDVGGQRSERK------XWVSFF--SDVDCAIFVTSLAEYDMKLYEDGNTSRLT-ESIAVFKDIMTNEFLKGAV 230 (340)
T ss_dssp SCEEEEEECCSCHHHHH------HHHTTS--CSCSEEEEEEEGGGTTCBCC--CCSBHHH-HHHHHHHHHHHCGGGTTSE
T ss_pred eeeeccccCCCcccccc------cHHHHh--ccCCEEEEEEECCccccccccccccchHH-HHHHHHHHHhhhhccCCCe
Confidence 34579999999955411 222222 347999999998621 1111111 1111122222 14689
Q ss_pred ceeeecCCCcCCh
Q 024413 234 LVLAFNKTDVAQH 246 (268)
Q Consensus 234 ~ilV~NK~Dl~~~ 246 (268)
+++|+||+|+...
T Consensus 231 iiLv~NK~DL~~e 243 (340)
T 4fid_A 231 KLIFLNKMDLFEE 243 (340)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEEECchhhhh
Confidence 9999999998653
No 377
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.96 E-value=4.6e-06 Score=80.80 Aligned_cols=41 Identities=12% Similarity=0.181 Sum_probs=34.4
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCcc-cEEEEeccc
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRN-IRGYVMNLD 106 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~-g~i~i~~~~ 106 (268)
+..|..++|+||||+|||||+++|++...+.. +.+.+.+..
T Consensus 57 i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~ 98 (604)
T 3k1j_A 57 ANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNP 98 (604)
T ss_dssp HHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCT
T ss_pred ccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCc
Confidence 56778899999999999999999999998876 666665543
No 378
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.94 E-value=5.9e-06 Score=74.04 Aligned_cols=40 Identities=25% Similarity=0.255 Sum_probs=32.1
Q ss_pred cCCeEEEEEecCCCCHHHHHHHHHhccc--CcccEEEEeccc
Q 024413 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQ--SRNIRGYVMNLD 106 (268)
Q Consensus 67 ~~g~~v~iiG~~GsGKSTLl~~l~g~~~--~~~g~i~i~~~~ 106 (268)
....+++|+||||||||||+++|.++.. ++.|.+.+...|
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D 131 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTD 131 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeec
Confidence 3456999999999999999999999987 456666665544
No 379
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.94 E-value=5e-06 Score=79.07 Aligned_cols=61 Identities=11% Similarity=-0.181 Sum_probs=40.6
Q ss_pred hhhh-cHHHHHHHHHHHHHhcCC--CEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEc
Q 024413 145 LNLF-TTKFDEVISLIERRADHL--DYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVD 206 (268)
Q Consensus 145 ~~~l-S~G~~qr~~ia~al~~~~--~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD 206 (268)
+..| ||||+||++||++++.+| +++|+|||+..-..........+...++. ...+|+..+|
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~ 457 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHL 457 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCC
T ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecC
Confidence 4567 999999999999999999 99999999875432222223333333333 2344444444
No 380
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=97.94 E-value=5.3e-05 Score=66.03 Aligned_cols=162 Identities=15% Similarity=0.248 Sum_probs=82.8
Q ss_pred cCCeEEEEEec-CCCCHHHHHHHHHhcccCcccEEEEecccCCCCCccccccc----chhh----HHHHHHHHHHc----
Q 024413 67 RKPVIIIVVGM-AGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANI----DIRD----TIRYKEVMKQF---- 133 (268)
Q Consensus 67 ~~g~~v~iiG~-~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~----~~~~----~~~~~~~l~~~---- 133 (268)
++..+++|.|+ +|+||||+.-.|+......+.++.+.+.|+....+.....+ .+.+ ...+++.+...
T Consensus 80 ~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~~~~l~~~~~~~~~~gl~~~L~~~~~l~~~i~~~~~~~ 159 (271)
T 3bfv_A 80 SAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRKPTQHYIFNLPNNEGLSSLLLNWSTYQDSIISTEIED 159 (271)
T ss_dssp CCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSSSCCHHHHTTCCCSSSHHHHHTTSSCHHHHEEECSSTT
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCccHHHHcCCCCCCCHHHHhCCCCCHHHcEEeCCCCC
Confidence 34568888876 79999999999888776556677777766543221110000 0000 00111111111
Q ss_pred -CCCCCCCcccchhhh--cHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCc
Q 024413 134 -NLGPNGGILTSLNLF--TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS 210 (268)
Q Consensus 134 -~l~~~~~~~~~~~~l--S~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~ 210 (268)
.+-+.+.....+.+| |..+++. ...+..+.+++|+|+|+...... . ..+. ..+|.+++|+.....
T Consensus 160 l~vl~~g~~~~~~~ell~~~~l~~l---l~~l~~~yD~VIIDtpp~~~~~d-~---~~l~-----~~aD~vilVv~~~~~ 227 (271)
T 3bfv_A 160 LDVLTSGPIPPNPSELITSRAFANL---YDTLLMNYNFVIIDTPPVNTVTD-A---QLFS-----KFTGNVVYVVNSENN 227 (271)
T ss_dssp EEEECCCSCCSCHHHHHTSHHHHHH---HHHHHHHCSEEEEECCCTTTCSH-H---HHHH-----HHHCEEEEEEETTSC
T ss_pred EEEEECCCCCCCHHHHhChHHHHHH---HHHHHhCCCEEEEeCCCCchHHH-H---HHHH-----HHCCEEEEEEeCCCC
Confidence 111111111112222 3333333 33444578999999998643210 0 1111 125899999988542
Q ss_pred CCchhhHHHHHHHHHHHHhhCCCce-eeecCCCcCC
Q 024413 211 ANPMTFMSNMLYACSILYKTRLPLV-LAFNKTDVAQ 245 (268)
Q Consensus 211 ~~~~~~~~~~~~~~~~l~~~~~p~i-lV~NK~Dl~~ 245 (268)
..... ....+.+...+.+++ +|+|++|...
T Consensus 228 --~~~~~---~~~~~~l~~~~~~~~GvVlN~~~~~~ 258 (271)
T 3bfv_A 228 --NKDEV---KKGKELIEATGAKLLGVVLNRMPKDK 258 (271)
T ss_dssp --CHHHH---HHHHHHHHTTTCEEEEEEEEEECC--
T ss_pred --cHHHH---HHHHHHHHhCCCCEEEEEEeCCcCCC
Confidence 22211 122345555667766 8999998644
No 381
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=97.94 E-value=3.2e-05 Score=68.42 Aligned_cols=162 Identities=15% Similarity=0.181 Sum_probs=83.9
Q ss_pred cCCeEEEEEec-CCCCHHHHHHHHHhcccCcccEEEEecccCCCCCccccccc----chhh----HHHHHHHHHH-----
Q 024413 67 RKPVIIIVVGM-AGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANI----DIRD----TIRYKEVMKQ----- 132 (268)
Q Consensus 67 ~~g~~v~iiG~-~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~----~~~~----~~~~~~~l~~----- 132 (268)
.++.+++|.|+ +|+||||+.-.|+......+.++.+.+.|+....+.....+ .+.+ ...+++++..
T Consensus 102 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~r~~~l~~~~~~~~~~gl~~~L~~~~~l~~~i~~~~~~~ 181 (299)
T 3cio_A 102 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKGG 181 (299)
T ss_dssp CSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCTTTCCHHHHTTCCCSSSHHHHHTTSSCHHHHCEEETTTT
T ss_pred CCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCCCCccHHHHcCCCCCCCHHHHCcCCCCHHHhhhccCCCC
Confidence 34578899987 79999999999888776556677777766532221111000 0000 0011111111
Q ss_pred cCCCCCCCcccchhh-h-cHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCc
Q 024413 133 FNLGPNGGILTSLNL-F-TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRS 210 (268)
Q Consensus 133 ~~l~~~~~~~~~~~~-l-S~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~ 210 (268)
+.+-+.+.....+.+ + |..+++ +...+..+.+++|+|+|+..... ... .....+|.+++|+.....
T Consensus 182 l~vl~~g~~~~~~~ell~~~~l~~---ll~~l~~~yD~VIIDtpp~~~~~-----d~~----~l~~~ad~vilV~~~~~~ 249 (299)
T 3cio_A 182 FDVITRGQVPPNPSELLMRDRMRQ---LLEWANDHYDLVIVDTPPMLAVS-----DAA----VVGRSVGTSLLVARFGLN 249 (299)
T ss_dssp EEEECCCSCCSCHHHHHTSHHHHH---HHHHHHHHCSEEEEECCCTTTCT-----HHH----HHGGGCSEEEEEEETTTS
T ss_pred EEEEECCCCCCCHHHHhCHHHHHH---HHHHHHhCCCEEEEcCCCCchhH-----HHH----HHHHHCCEEEEEEcCCCC
Confidence 111111111111222 2 233333 33344467899999999875321 001 113457999999887543
Q ss_pred CCchhhHHHHHHHHHHHHhhCCCce-eeecCCCcCC
Q 024413 211 ANPMTFMSNMLYACSILYKTRLPLV-LAFNKTDVAQ 245 (268)
Q Consensus 211 ~~~~~~~~~~~~~~~~l~~~~~p~i-lV~NK~Dl~~ 245 (268)
.... . ....+.+...+.+++ +|+|++|...
T Consensus 250 ~~~~--~---~~~~~~l~~~~~~~~GvVlN~~~~~~ 280 (299)
T 3cio_A 250 TAKE--V---SLSMQRLEQAGVNIKGAILNGVIKRA 280 (299)
T ss_dssp CTTH--H---HHHHHHHHHTTCCCCCEEEEECCCCC
T ss_pred hHHH--H---HHHHHHHHhCCCCeEEEEEeCCccCC
Confidence 2211 1 112344555566654 7899998643
No 382
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.94 E-value=9e-05 Score=60.20 Aligned_cols=37 Identities=35% Similarity=0.451 Sum_probs=31.4
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEE
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYV 102 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i 102 (268)
..+|.+++|+|++||||||+.+.|++.....++.+.+
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~ 46 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEV 46 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 5678999999999999999999999988766665543
No 383
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=97.92 E-value=8e-05 Score=62.80 Aligned_cols=38 Identities=32% Similarity=0.375 Sum_probs=31.8
Q ss_pred EEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCC
Q 024413 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA 108 (268)
Q Consensus 71 ~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~ 108 (268)
+++|.|..|+||||+.-.|+......+.++.+.+.|+.
T Consensus 2 kI~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 39 (254)
T 3kjh_A 2 KLAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPD 39 (254)
T ss_dssp EEEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECTT
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 35668999999999999999888777778888887774
No 384
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.91 E-value=1.5e-05 Score=68.23 Aligned_cols=36 Identities=19% Similarity=0.170 Sum_probs=28.3
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecc
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNL 105 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~ 105 (268)
.++| ++|+||||+|||||+++|++... .+.+++.+.
T Consensus 48 ~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~ 83 (254)
T 1ixz_A 48 IPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGS 83 (254)
T ss_dssp CCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHH
T ss_pred CCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHH
Confidence 3445 89999999999999999999764 556666543
No 385
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.88 E-value=8.5e-06 Score=66.01 Aligned_cols=30 Identities=23% Similarity=0.284 Sum_probs=25.8
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCc
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSR 96 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~ 96 (268)
+.+| +.+|+|+||||||||+++|.+...+.
T Consensus 24 ~~~g-~~~i~G~NGsGKStll~ai~~~l~~~ 53 (182)
T 3kta_A 24 FSKG-FTAIVGANGSGKSNIGDAILFVLGGL 53 (182)
T ss_dssp CCSS-EEEEEECTTSSHHHHHHHHHHHTTCC
T ss_pred cCCC-cEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 4555 89999999999999999999987654
No 386
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.88 E-value=9.1e-05 Score=67.19 Aligned_cols=39 Identities=21% Similarity=0.262 Sum_probs=32.8
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEE-EEec
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRG-YVMN 104 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i-~i~~ 104 (268)
+++|.++.|.||||+|||||+..++....+..|.+ |+..
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~ 97 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDA 97 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEec
Confidence 67899999999999999999999999877766655 5543
No 387
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.88 E-value=2.6e-05 Score=75.21 Aligned_cols=26 Identities=27% Similarity=0.544 Sum_probs=22.9
Q ss_pred CCeEEEEEecCCCCHHHHHHHHHhcc
Q 024413 68 KPVIIIVVGMAGSGKTTFMHRLVCHT 93 (268)
Q Consensus 68 ~g~~v~iiG~~GsGKSTLl~~l~g~~ 93 (268)
+..+++|+|++|+|||||+|.|+|..
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCC
Confidence 34678999999999999999999964
No 388
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.86 E-value=2.1e-05 Score=68.38 Aligned_cols=36 Identities=19% Similarity=0.170 Sum_probs=28.4
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecc
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNL 105 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~ 105 (268)
.++| ++|+||||+|||||+++|++... .+.+++.+.
T Consensus 72 ~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~ 107 (278)
T 1iy2_A 72 IPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGS 107 (278)
T ss_dssp CCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHH
T ss_pred CCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHH
Confidence 3445 89999999999999999999864 566666543
No 389
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=97.86 E-value=7.4e-05 Score=65.70 Aligned_cols=162 Identities=14% Similarity=0.161 Sum_probs=84.2
Q ss_pred cCCeEEEEEec-CCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHH-HcCCC--------
Q 024413 67 RKPVIIIVVGM-AGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMK-QFNLG-------- 136 (268)
Q Consensus 67 ~~g~~v~iiG~-~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~l~-------- 136 (268)
.++.+++|+|+ .|+||||+.-.|+......+.++.+.+.|+....+.....+ .....+.+++. ...+.
T Consensus 90 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~~~~l~~~~~~--~~~~gl~~~l~~~~~~~~~i~~~~~ 167 (286)
T 3la6_A 90 AQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGT--NNVNGLSEILIGQGDITTAAKPTSI 167 (286)
T ss_dssp TTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTTTCCHHHHHTC--CCTTCHHHHHHTSSCTTTTCEECSS
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCCCCCHHHHhCC--CCCCCHHHHccCCCCHHHheeccCC
Confidence 34567888876 79999999999988877666678777776643221111000 00000111111 00111
Q ss_pred ------CCCCcccchhhh-cHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCC
Q 024413 137 ------PNGGILTSLNLF-TTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPR 209 (268)
Q Consensus 137 ------~~~~~~~~~~~l-S~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~ 209 (268)
+.+.....+.++ +. .+...+...+..+.+++|+|+|....... .......+|.+++|+....
T Consensus 168 ~~l~vl~~g~~~~~~~ell~~--~~l~~ll~~l~~~yD~VIIDtpp~~~~~d---------a~~l~~~aD~vllVv~~~~ 236 (286)
T 3la6_A 168 AKFDLIPRGQVPPNPSELLMS--ERFAELVNWASKNYDLVLIDTPPILAVTD---------AAIVGRHVGTTLMVARYAV 236 (286)
T ss_dssp TTEEEECCCSCCSCHHHHHTS--HHHHHHHHHHHHHCSEEEEECCCTTTCTH---------HHHHTTTCSEEEEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHhch--HHHHHHHHHHHhCCCEEEEcCCCCcchHH---------HHHHHHHCCeEEEEEeCCC
Confidence 001111011111 11 12223444455678999999998754210 1112345899999998854
Q ss_pred cCCchhhHHHHHHHHHHHHhhCCC-ceeeecCCCcCCh
Q 024413 210 SANPMTFMSNMLYACSILYKTRLP-LVLAFNKTDVAQH 246 (268)
Q Consensus 210 ~~~~~~~~~~~~~~~~~l~~~~~p-~ilV~NK~Dl~~~ 246 (268)
. ..... ....+.+.+.+.+ .=+|+||+|....
T Consensus 237 ~--~~~~~---~~~~~~l~~~g~~~~GvVlN~v~~~~~ 269 (286)
T 3la6_A 237 N--TLKEV---ETSLSRFEQNGIPVKGVILNSIFRRAS 269 (286)
T ss_dssp S--BHHHH---HHHHHHHHHTTCCCCEEEEEEECCCCC
T ss_pred C--cHHHH---HHHHHHHHhCCCCEEEEEEcCcccccc
Confidence 2 22211 2223455555655 4579999986543
No 390
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=97.86 E-value=0.00018 Score=63.23 Aligned_cols=43 Identities=23% Similarity=0.233 Sum_probs=34.1
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCC
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA 108 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~ 108 (268)
.+.+.+++|.|..|+||||+.-.|+......+.++.+.+.|+.
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~ 80 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPK 80 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSS
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 4567888888999999999999888877666667888777763
No 391
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.85 E-value=8.1e-06 Score=68.10 Aligned_cols=29 Identities=14% Similarity=0.408 Sum_probs=26.4
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhccc
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQ 94 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~ 94 (268)
..+|.+++|+||+|||||||++.|.+..+
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 45789999999999999999999999865
No 392
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.84 E-value=1.1e-05 Score=70.21 Aligned_cols=26 Identities=27% Similarity=0.570 Sum_probs=22.9
Q ss_pred eEEEEEecCCCCHHHHHHHHHhcccC
Q 024413 70 VIIIVVGMAGSGKTTFMHRLVCHTQS 95 (268)
Q Consensus 70 ~~v~iiG~~GsGKSTLl~~l~g~~~~ 95 (268)
..++++|.+|+|||||+|.|.|....
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~ 125 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRAS 125 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-
T ss_pred hheEEeCCCCCCHHHHHHHHhccccc
Confidence 58999999999999999999987654
No 393
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.83 E-value=8e-06 Score=65.45 Aligned_cols=27 Identities=30% Similarity=0.375 Sum_probs=23.9
Q ss_pred CeEEEEEecCCCCHHHHHHHHHhcccC
Q 024413 69 PVIIIVVGMAGSGKTTFMHRLVCHTQS 95 (268)
Q Consensus 69 g~~v~iiG~~GsGKSTLl~~l~g~~~~ 95 (268)
+.+++|+|++||||||+++.|++.+.+
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 567999999999999999999997643
No 394
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.82 E-value=0.00073 Score=62.81 Aligned_cols=95 Identities=14% Similarity=0.133 Sum_probs=58.9
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCc-ccEEEEecccCCCCCcccccccchhhHHHHHHH-HHHcCCCCCCCccc
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSR-NIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEV-MKQFNLGPNGGILT 143 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~-~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~l~~~~~~~~ 143 (268)
.++|.++.|.|++|+|||||+..++...... +..+.+.... .....-...+ ....++... ...
T Consensus 197 l~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE-------------~~~~~l~~R~~~~~~~i~~~-~l~- 261 (444)
T 2q6t_A 197 LGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE-------------MPAAQLTLRMMCSEARIDMN-RVR- 261 (444)
T ss_dssp CCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS-------------SCHHHHHHHHHHHHTTCCTT-TCC-
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC-------------CCHHHHHHHHHHHHcCCCHH-HHh-
Confidence 6789999999999999999999888765432 2222222111 0011111111 123444432 112
Q ss_pred chhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 024413 144 SLNLFTTKFDEVISLIERRADHLDYVLVDTPGQ 176 (268)
Q Consensus 144 ~~~~lS~G~~qr~~ia~al~~~~~illlDePG~ 176 (268)
-..|+..+.+++.-+...+...++.+.|+|+.
T Consensus 262 -~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~ 293 (444)
T 2q6t_A 262 -LGQLTDRDFSRLVDVASRLSEAPIYIDDTPDL 293 (444)
T ss_dssp -GGGCCHHHHHHHHHHHHHHHTSCEEEECCTTC
T ss_pred -CCCCCHHHHHHHHHHHHHHhcCCEEEECCCCC
Confidence 24688899888887776666778999998875
No 395
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.81 E-value=3.5e-05 Score=72.56 Aligned_cols=68 Identities=16% Similarity=0.138 Sum_probs=45.4
Q ss_pred EEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccchhhhcHH
Q 024413 72 IIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTTK 151 (268)
Q Consensus 72 v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~G 151 (268)
+.|+||||+|||||++++++.... -.+++...+.... . +. .++
T Consensus 52 vLL~GppGtGKT~Laraia~~~~~--~f~~is~~~~~~~-------------------------------~--~g--~~~ 94 (476)
T 2ce7_A 52 ILLVGPPGTGKTLLARAVAGEANV--PFFHISGSDFVEL-------------------------------F--VG--VGA 94 (476)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTC--CEEEEEGGGTTTC-------------------------------C--TT--HHH
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC--CeeeCCHHHHHHH-------------------------------H--hc--ccH
Confidence 789999999999999999986432 1122211111000 0 11 245
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCC
Q 024413 152 FDEVISLIERRADHLDYVLVDTPGQ 176 (268)
Q Consensus 152 ~~qr~~ia~al~~~~~illlDePG~ 176 (268)
++.|..+.+|....|.++|+||+..
T Consensus 95 ~~~r~lf~~A~~~~p~ILfIDEid~ 119 (476)
T 2ce7_A 95 ARVRDLFAQAKAHAPCIVFIDEIDA 119 (476)
T ss_dssp HHHHHHHHHHHHTCSEEEEEETGGG
T ss_pred HHHHHHHHHHHhcCCCEEEEechhh
Confidence 6677778888888999999999954
No 396
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.80 E-value=7.4e-06 Score=78.57 Aligned_cols=40 Identities=18% Similarity=0.234 Sum_probs=34.6
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCccc-EEE-Eecc
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNI-RGY-VMNL 105 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g-~i~-i~~~ 105 (268)
.++|.+++|+|+||||||||+++|++.+.+++| .+. +++.
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD 407 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGD 407 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSH
T ss_pred cccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCc
Confidence 678999999999999999999999999998876 564 5543
No 397
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.78 E-value=3.5e-05 Score=71.36 Aligned_cols=35 Identities=11% Similarity=0.038 Sum_probs=30.8
Q ss_pred hhhhcHHHHHHHHHHHHHh----cCCCEEEEeCCCCcch
Q 024413 145 LNLFTTKFDEVISLIERRA----DHLDYVLVDTPGQIEI 179 (268)
Q Consensus 145 ~~~lS~G~~qr~~ia~al~----~~~~illlDePG~~~~ 179 (268)
+..|||||+|+++||++++ .+|+++|+|||....+
T Consensus 331 ~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD 369 (430)
T 1w1w_A 331 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALD 369 (430)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCC
T ss_pred cccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCC
Confidence 4569999999999999998 5799999999987543
No 398
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=97.76 E-value=0.00037 Score=58.71 Aligned_cols=161 Identities=13% Similarity=0.176 Sum_probs=81.4
Q ss_pred CCeEEEEEe-cCCCCHHHHHHHHHhcccCc-ccEEEEecccCCCCCccccc-----ccchhhHHH----HHH-HHHH---
Q 024413 68 KPVIIIVVG-MAGSGKTTFMHRLVCHTQSR-NIRGYVMNLDPAVMTLPFAA-----NIDIRDTIR----YKE-VMKQ--- 132 (268)
Q Consensus 68 ~g~~v~iiG-~~GsGKSTLl~~l~g~~~~~-~g~i~i~~~~~~~~~~~~~~-----~~~~~~~~~----~~~-~l~~--- 132 (268)
.+.+++|.+ ..|+||||+.-.|+...... +.++.+.+.|+...+....- ...+.+... .++ +.+.
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 82 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLPFGDLDMYLSGNTHSQDLADISNASDRLDKSLLDTMVQ 82 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTTTCCGGGGTCSSCCSCCHHHHHHTGGGCCHHHHHHHSE
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCCCCCHHHHhCCCCCCCCHHHHHhhHhhhhHHHHHHHhE
Confidence 456677775 58999999999999888776 67888877776533222211 001111000 000 0110
Q ss_pred -----cCCCCCCCcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcC
Q 024413 133 -----FNLGPNGGILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDT 207 (268)
Q Consensus 133 -----~~l~~~~~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~ 207 (268)
+.+-+..........++.. +...+...+..+.+++|+|+|+...... ... ...+|.+++++..
T Consensus 83 ~~~~~l~~l~~~~~~~~~~~~~~~--~l~~~l~~l~~~yD~viiD~p~~~~~~~--------~~~--l~~ad~viiv~~~ 150 (245)
T 3ea0_A 83 HISPSLDLIPSPATFEKIVNIEPE--RVSDLIHIAASFYDYIIVDFGASIDHVG--------VWV--LEHLDELCIVTTP 150 (245)
T ss_dssp EEETTEEEECCCSSHHHHHHCCHH--HHHHHHHHHHHHCSEEEEEEESSCCTTH--------HHH--GGGCSEEEEEECS
T ss_pred ecCCCeEEEcCCCChHhhhcCCHH--HHHHHHHHHHhhCCEEEEeCCCCCchHH--------HHH--HHHCCEEEEEecC
Confidence 0111111000001122222 2223344445578999999998654311 111 2347999999887
Q ss_pred CCcCCchhhHHHHHHHHHHHHhhC---CCceeeecCCCcCC
Q 024413 208 PRSANPMTFMSNMLYACSILYKTR---LPLVLAFNKTDVAQ 245 (268)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~l~~~~---~p~ilV~NK~Dl~~ 245 (268)
... . ........+.+...+ ...-+|+||++...
T Consensus 151 ~~~----~-~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~ 186 (245)
T 3ea0_A 151 SLQ----S-LRRAGQLLKLCKEFEKPISRIEIILNRADTNS 186 (245)
T ss_dssp SHH----H-HHHHHHHHHHHHTCSSCCSCEEEEEESTTSCT
T ss_pred cHH----H-HHHHHHHHHHHHHhCCCccceEEEEecCCCCC
Confidence 421 1 111112234444444 33678999998643
No 399
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=97.75 E-value=0.00055 Score=63.80 Aligned_cols=153 Identities=10% Similarity=0.057 Sum_probs=76.2
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHH-HHcCCCCCCCcccc
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVM-KQFNLGPNGGILTS 144 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~l~~~~~~~~~ 144 (268)
..+|..+.|.|++|+|||||+-.++...-..+..+.+...... .. .-...++ ...++... ...
T Consensus 194 l~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms-----~~--------ql~~R~~~~~~~i~~~-~l~-- 257 (444)
T 3bgw_A 194 YKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMG-----KK--------ENIKRLIVTAGSINAQ-KIK-- 257 (444)
T ss_dssp BCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSC-----TT--------HHHHHHHHHHSCCCHH-HHH--
T ss_pred CCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCC-----HH--------HHHHHHHHHHcCCCHH-HHh--
Confidence 6899999999999999999988877654332334433322110 00 0011111 11222200 000
Q ss_pred hhh--hcHHHHHHHHHHHHHhcCCCEEEEeCCCCcchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCc-------hh
Q 024413 145 LNL--FTTKFDEVISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANP-------MT 215 (268)
Q Consensus 145 ~~~--lS~G~~qr~~ia~al~~~~~illlDePG~~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~-------~~ 215 (268)
-.. |+..+.+++.-+...+.+.++.|.|+|+..- ......+.+..+....+-.++|||.-..+.. ..
T Consensus 258 ~g~~~l~~~~~~~l~~a~~~l~~~~l~i~d~~~~s~----~~i~~~ir~l~~~~~~~~~lIVID~Lq~~~~~~~~~~r~~ 333 (444)
T 3bgw_A 258 AARRDFASEDWGKLSMAIGEISNSNINIFDKAGQSV----NYIWSKTRQTKRKNPGKRVIVMIDYLQLLEPAKANDSRTN 333 (444)
T ss_dssp HTGGGTCCSCHHHHHHHHHHHHTSCEEEECCSSCBH----HHHHHHHHHHHHHSCSSCEEEEEECSTTSBCSCSSSCHHH
T ss_pred cccCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCH----HHHHHHHHHHHHHhCCCCeEEEEecHHhccCCCCCCCHHH
Confidence 011 5555566776666666677899999987522 1222233333333344523556676433221 11
Q ss_pred hHHHHHHHHHH-HHhhCCCceeee
Q 024413 216 FMSNMLYACSI-LYKTRLPLVLAF 238 (268)
Q Consensus 216 ~~~~~~~~~~~-l~~~~~p~ilV~ 238 (268)
....+...+.. .+..++|++++.
T Consensus 334 ~i~~i~~~Lk~lAke~~v~vi~ls 357 (444)
T 3bgw_A 334 QISQISRDLKKMARELDVVVIALS 357 (444)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEe
Confidence 12222222222 245688887764
No 400
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.74 E-value=3e-05 Score=70.50 Aligned_cols=36 Identities=17% Similarity=0.036 Sum_probs=32.0
Q ss_pred chh-hhcHHHHHHHHHHHHHh---------cCCCEEEEeCCCCcch
Q 024413 144 SLN-LFTTKFDEVISLIERRA---------DHLDYVLVDTPGQIEI 179 (268)
Q Consensus 144 ~~~-~lS~G~~qr~~ia~al~---------~~~~illlDePG~~~~ 179 (268)
.++ .||+||+|+++||++++ .+|+++|+|||....+
T Consensus 261 ~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD 306 (359)
T 2o5v_A 261 PASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELD 306 (359)
T ss_dssp EHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCC
T ss_pred chhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCC
Confidence 356 79999999999999999 8999999999987543
No 401
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.73 E-value=3.3e-05 Score=63.95 Aligned_cols=38 Identities=32% Similarity=0.332 Sum_probs=30.5
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEeccc
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLD 106 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~ 106 (268)
+.++.+++|+|++||||||+++.|.+.+. +..++...+
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~~~---~~~~i~~D~ 55 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKHLP---NCSVISQDD 55 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTTST---TEEEEEGGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhcC---CcEEEeCCc
Confidence 67889999999999999999999999753 344554443
No 402
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.68 E-value=0.00013 Score=63.60 Aligned_cols=26 Identities=19% Similarity=0.342 Sum_probs=23.1
Q ss_pred CCeEEEEEecCCCCHHHHHHHHHhcc
Q 024413 68 KPVIIIVVGMAGSGKTTFMHRLVCHT 93 (268)
Q Consensus 68 ~g~~v~iiG~~GsGKSTLl~~l~g~~ 93 (268)
.+.-+.|.||+|+||||+++++++..
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 45678999999999999999999865
No 403
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.67 E-value=6.3e-06 Score=78.21 Aligned_cols=45 Identities=18% Similarity=0.219 Sum_probs=33.2
Q ss_pred ccccCCeEEEEEecCCCCHHHHHHHHHh--cccCcccEEEEecccCC
Q 024413 64 NFKRKPVIIIVVGMAGSGKTTFMHRLVC--HTQSRNIRGYVMNLDPA 108 (268)
Q Consensus 64 ~~~~~g~~v~iiG~~GsGKSTLl~~l~g--~~~~~~g~i~i~~~~~~ 108 (268)
....++..+.|.|.+||||||++++|.. +...+.+.+.+...|+.
T Consensus 162 ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK 208 (512)
T 2ius_A 162 ADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPK 208 (512)
T ss_dssp EEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCS
T ss_pred EEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCc
Confidence 3356788899999999999999999886 44555565555555543
No 404
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.67 E-value=2.6e-05 Score=63.09 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=25.6
Q ss_pred cCCeEEEEEecCCCCHHHHHHHHHhcccC
Q 024413 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQS 95 (268)
Q Consensus 67 ~~g~~v~iiG~~GsGKSTLl~~l~g~~~~ 95 (268)
.+|.+++|+|++||||||+.+.|.+.+.+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 46889999999999999999999998755
No 405
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.65 E-value=5.6e-05 Score=70.56 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=23.2
Q ss_pred CCeEEEEEecCCCCHHHHHHHHHhcc
Q 024413 68 KPVIIIVVGMAGSGKTTFMHRLVCHT 93 (268)
Q Consensus 68 ~g~~v~iiG~~GsGKSTLl~~l~g~~ 93 (268)
+-.+|+|+|+.++|||||||.|.|..
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~~ 91 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYM 91 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhhc
Confidence 45789999999999999999999863
No 406
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.64 E-value=1.9e-05 Score=66.12 Aligned_cols=34 Identities=21% Similarity=0.212 Sum_probs=27.0
Q ss_pred CeEEEEEecCCCCHHHHHHHHHhcc---cCcccEEEE
Q 024413 69 PVIIIVVGMAGSGKTTFMHRLVCHT---QSRNIRGYV 102 (268)
Q Consensus 69 g~~v~iiG~~GsGKSTLl~~l~g~~---~~~~g~i~i 102 (268)
+.+++|+|++||||||+.+.|++.+ .++.|.++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 4689999999999999999999876 445554443
No 407
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.60 E-value=9.5e-05 Score=67.20 Aligned_cols=35 Identities=6% Similarity=0.209 Sum_probs=29.8
Q ss_pred chhhhcHHHHHHH------HHHHHHhcC-CCEEEEeCCCCcc
Q 024413 144 SLNLFTTKFDEVI------SLIERRADH-LDYVLVDTPGQIE 178 (268)
Q Consensus 144 ~~~~lS~G~~qr~------~ia~al~~~-~~illlDePG~~~ 178 (268)
.+..|||||+||+ ++|+++..+ |+++|+|||...-
T Consensus 277 ~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~L 318 (371)
T 3auy_A 277 TIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYL 318 (371)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTC
T ss_pred chHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcC
Confidence 3678999999987 556888889 9999999998754
No 408
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.60 E-value=3e-05 Score=64.60 Aligned_cols=39 Identities=18% Similarity=0.213 Sum_probs=33.0
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCccc--EEEEec
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNI--RGYVMN 104 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g--~i~i~~ 104 (268)
..+|.+++|+|++||||||+.+.|.+.+.+..| .+++++
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~ 62 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG 62 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECC
Confidence 567889999999999999999999998876666 666654
No 409
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.58 E-value=0.00041 Score=62.34 Aligned_cols=27 Identities=26% Similarity=0.276 Sum_probs=25.3
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhc
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCH 92 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~ 92 (268)
+++|.++.|.|++|+|||||+..++..
T Consensus 119 l~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 119 IESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 688999999999999999999999885
No 410
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.58 E-value=0.00025 Score=63.38 Aligned_cols=29 Identities=28% Similarity=0.548 Sum_probs=24.7
Q ss_pred cCCeEEEEEecCCCCHHHHHHHHHhcccC
Q 024413 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQS 95 (268)
Q Consensus 67 ~~g~~v~iiG~~GsGKSTLl~~l~g~~~~ 95 (268)
..+..++|.||+|+|||||++.+++....
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~ 71 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHK 71 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34567899999999999999999987654
No 411
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.57 E-value=3.9e-05 Score=73.36 Aligned_cols=36 Identities=22% Similarity=0.277 Sum_probs=31.0
Q ss_pred CCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEe
Q 024413 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVM 103 (268)
Q Consensus 68 ~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~ 103 (268)
+|..++|+||||+|||||+++|++...+..+.+.+.
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~ 142 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLG 142 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEec
Confidence 688999999999999999999999987766665543
No 412
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=97.57 E-value=0.001 Score=57.00 Aligned_cols=41 Identities=24% Similarity=0.263 Sum_probs=29.9
Q ss_pred CeEEEEE-ecCCCCHHHHHHHHHhcccCcccEEEEecccCCC
Q 024413 69 PVIIIVV-GMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV 109 (268)
Q Consensus 69 g~~v~ii-G~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~ 109 (268)
+.+++|+ |..|+||||+.-.|+......+.++.+.+.|+..
T Consensus 18 ~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~~ 59 (262)
T 2ph1_A 18 KSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLG 59 (262)
T ss_dssp SCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred CeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 4455655 5689999999999988776555577777766543
No 413
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=97.57 E-value=0.00033 Score=59.55 Aligned_cols=40 Identities=25% Similarity=0.365 Sum_probs=30.3
Q ss_pred eEEEEE-ecCCCCHHHHHHHHHhcccCcccEEEEecccCCC
Q 024413 70 VIIIVV-GMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV 109 (268)
Q Consensus 70 ~~v~ii-G~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~ 109 (268)
.+++|. +..|+||||+.-.|+..+...+.++.+.+.|+..
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~ 43 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIGL 43 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCCCC
Confidence 455664 5588999999999998877666688887777643
No 414
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.57 E-value=3.5e-05 Score=63.56 Aligned_cols=31 Identities=26% Similarity=0.269 Sum_probs=24.4
Q ss_pred cccccCCeEEEEEecCCCCHHHHHHHHHhcc
Q 024413 63 INFKRKPVIIIVVGMAGSGKTTFMHRLVCHT 93 (268)
Q Consensus 63 ~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~ 93 (268)
.....++.+++|+|++||||||+.+.|++.+
T Consensus 19 ~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 19 YFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3346788999999999999999999999865
No 415
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.56 E-value=0.00042 Score=59.36 Aligned_cols=37 Identities=24% Similarity=0.297 Sum_probs=28.8
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEec
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMN 104 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~ 104 (268)
...+.+++|+|+|||||||+.+.|...+. .+.+++++
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~ 65 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDG 65 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECG
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEec
Confidence 55678999999999999999999998754 23344444
No 416
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=97.56 E-value=0.00083 Score=57.31 Aligned_cols=38 Identities=26% Similarity=0.275 Sum_probs=28.5
Q ss_pred EEEE-EecCCCCHHHHHHHHHhcccCcccEEEEecccCC
Q 024413 71 IIIV-VGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA 108 (268)
Q Consensus 71 ~v~i-iG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~ 108 (268)
+++| -+..|+||||+.-.|+......+.++.+.+.|+.
T Consensus 4 ~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 42 (263)
T 1hyq_A 4 TITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADIT 42 (263)
T ss_dssp EEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 4555 4678999999999998877655557777776663
No 417
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.56 E-value=0.0013 Score=54.54 Aligned_cols=129 Identities=13% Similarity=0.062 Sum_probs=73.0
Q ss_pred EEE-EecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccchhhhcH
Q 024413 72 IIV-VGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTT 150 (268)
Q Consensus 72 v~i-iG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~lS~ 150 (268)
++| -+..|+||||+.-.|+......+ ++.+.+.|+.... ..++..-++. . .-++.
T Consensus 3 I~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~~~---------------~~~~~~~~l~-~-------~vi~~ 58 (209)
T 3cwq_A 3 ITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNRSA---------------TGWGKRGSLP-F-------KVVDE 58 (209)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTCHH---------------HHHHHHSCCS-S-------EEEEG
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCCCH---------------HHHhcCCCCC-c-------ceeCH
Confidence 444 47789999999999998876665 8877776653110 0111110010 0 01111
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCC-cchhhhhhHHHHHHHHHhccCCcEEEEEEcCCCcCCchhhHHHHHHHHHHHHh
Q 024413 151 KFDEVISLIERRADHLDYVLVDTPGQ-IEIFTWSASGAIITEAFASTFPTVVTYVVDTPRSANPMTFMSNMLYACSILYK 229 (268)
Q Consensus 151 G~~qr~~ia~al~~~~~illlDePG~-~~~~~~~~~~~~i~~~~~~~~~d~vv~vvD~~~~~~~~~~~~~~~~~~~~l~~ 229 (268)
. ....+..+.+++|+|+|+. .... ....+ ..+|.+++++..... +.. ......+.+..
T Consensus 59 ~------~l~~l~~~yD~viiD~p~~~~~~~--------~~~~l--~~aD~viiv~~~~~~----~~~-~~~~~~~~l~~ 117 (209)
T 3cwq_A 59 R------QAAKYAPKYQNIVIDTQARPEDED--------LEALA--DGCDLLVIPSTPDAL----ALD-ALMLTIETLQK 117 (209)
T ss_dssp G------GHHHHGGGCSEEEEEEECCCSSSH--------HHHHH--HTSSEEEEEECSSHH----HHH-HHHHHHHHHHH
T ss_pred H------HHHHhhhcCCEEEEeCCCCcCcHH--------HHHHH--HHCCEEEEEecCCch----hHH-HHHHHHHHHHh
Confidence 1 2233456789999999986 4431 11112 347999999887431 111 11111233433
Q ss_pred h-CCCceeeecCCCcCC
Q 024413 230 T-RLPLVLAFNKTDVAQ 245 (268)
Q Consensus 230 ~-~~p~ilV~NK~Dl~~ 245 (268)
. +.+..+|+|++|...
T Consensus 118 ~~~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 118 LGNNRFRILLTIIPPYP 134 (209)
T ss_dssp TCSSSEEEEECSBCCTT
T ss_pred ccCCCEEEEEEecCCcc
Confidence 2 577889999999764
No 418
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.55 E-value=0.00012 Score=69.24 Aligned_cols=73 Identities=18% Similarity=0.104 Sum_probs=43.6
Q ss_pred hhhhhccccchhhHHHHHhccccccccccCCCCCCcccccccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecc
Q 024413 26 EESSALKANDKEKEEITESMDKLHIEESSSGLAGSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNL 105 (268)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~ 105 (268)
..+.++-..+..+..+++....+..... ........++| +.|+||||+|||||+++|++... .+.+++.+.
T Consensus 28 ~~f~dv~G~~~~k~~l~~lv~~l~~~~~-----~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~ 98 (499)
T 2dhr_A 28 VTFKDVAGAEEAKEELKEIVEFLKNPSR-----FHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGS 98 (499)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCGGG-----TTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGG
T ss_pred CCHHHcCCcHHHHHHHHHHHHHhhchhh-----hhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehh
Confidence 3344444555556666554443322100 11112223445 89999999999999999999764 567777665
Q ss_pred cC
Q 024413 106 DP 107 (268)
Q Consensus 106 ~~ 107 (268)
+.
T Consensus 99 ~~ 100 (499)
T 2dhr_A 99 DF 100 (499)
T ss_dssp GG
T ss_pred HH
Confidence 43
No 419
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.55 E-value=0.0009 Score=59.96 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=23.8
Q ss_pred EEEEEecCCCCHHHHHHHHHhcccCc
Q 024413 71 IIIVVGMAGSGKTTFMHRLVCHTQSR 96 (268)
Q Consensus 71 ~v~iiG~~GsGKSTLl~~l~g~~~~~ 96 (268)
.+.|.||+|+|||||++.+++.....
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~ 71 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDK 71 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhh
Confidence 78999999999999999999987664
No 420
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=97.55 E-value=0.00098 Score=57.13 Aligned_cols=41 Identities=27% Similarity=0.374 Sum_probs=31.9
Q ss_pred cCCeEEEEE-ecCCCCHHHHHHHHHhcccCcccEEEEecccCC
Q 024413 67 RKPVIIIVV-GMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA 108 (268)
Q Consensus 67 ~~g~~v~ii-G~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~ 108 (268)
+++.+++|. |..|+||||+.-.|+..+. .+.++.+.+.|+.
T Consensus 25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~ 66 (267)
T 3k9g_A 25 KKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQ 66 (267)
T ss_dssp -CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECTT
T ss_pred CCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCCC
Confidence 456677775 5688999999999998887 7778888877764
No 421
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.53 E-value=0.00018 Score=71.55 Aligned_cols=99 Identities=16% Similarity=0.185 Sum_probs=61.3
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCcc--c-EEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCC---
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRN--I-RGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNG--- 139 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~--g-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--- 139 (268)
+..+..++|+||+||||||++..++....... | .+.+.. |... -.......+.+.+++....
T Consensus 106 l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~--------P~r~----La~q~~~~l~~~~~~~v~~~vG 173 (773)
T 2xau_A 106 YQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQ--------PRRV----AAMSVAQRVAEEMDVKLGEEVG 173 (773)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEE--------SCHH----HHHHHHHHHHHHTTCCBTTTEE
T ss_pred HhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecC--------chHH----HHHHHHHHHHHHhCCchhheec
Confidence 56788999999999999999998876544432 2 233211 1000 0001112233333332110
Q ss_pred ---------CcccchhhhcHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 024413 140 ---------GILTSLNLFTTKFDEVISLIERRADHLDYVLVDTPGQ 176 (268)
Q Consensus 140 ---------~~~~~~~~lS~G~~qr~~ia~al~~~~~illlDePG~ 176 (268)
.....+..+|.|+.++..++..+..+++++|+|||-.
T Consensus 174 ~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~ 219 (773)
T 2xau_A 174 YSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHE 219 (773)
T ss_dssp EEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGG
T ss_pred ceeccccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccc
Confidence 0112255689999999999888899999999999974
No 422
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.47 E-value=4.9e-05 Score=62.92 Aligned_cols=29 Identities=21% Similarity=0.399 Sum_probs=25.4
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhccc
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQ 94 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~ 94 (268)
..+|.+++|+||+||||||+.+.|.....
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 45678899999999999999999998763
No 423
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.47 E-value=6.1e-05 Score=69.75 Aligned_cols=32 Identities=22% Similarity=0.328 Sum_probs=27.2
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCcc
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRN 97 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~ 97 (268)
+..+.+++|+||||||||||+++|.+...+++
T Consensus 23 ~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~ 54 (430)
T 1w1w_A 23 FGESNFTSIIGPNGSGKSNMMDAISFVLGVRS 54 (430)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHHTTC--
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhhhcccc
Confidence 45688999999999999999999999887654
No 424
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.46 E-value=0.00064 Score=60.49 Aligned_cols=98 Identities=17% Similarity=0.219 Sum_probs=56.8
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhccc-C------cccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCC
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQ-S------RNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPN 138 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~-~------~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 138 (268)
+++|.++.|.|++|+|||||+..++.... + ..+.+|+...... +..++.+.++.+++...
T Consensus 104 l~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~-------------~~~~l~~~~~~~g~~~~ 170 (324)
T 2z43_A 104 IETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTF-------------RWERIENMAKALGLDID 170 (324)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC-------------CHHHHHHHHHHTTCCHH
T ss_pred CCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCC-------------CHHHHHHHHHHhCCCHH
Confidence 67899999999999999999999887532 2 2334555432210 11223333445554321
Q ss_pred C---CcccchhhhcHH-HHHHHHHHHHHh---cCCCEEEEeCCCCc
Q 024413 139 G---GILTSLNLFTTK-FDEVISLIERRA---DHLDYVLVDTPGQI 177 (268)
Q Consensus 139 ~---~~~~~~~~lS~G-~~qr~~ia~al~---~~~~illlDePG~~ 177 (268)
. ... .....+.. +.+.+..++.++ .+++++++|..+..
T Consensus 171 ~~~~~l~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l 215 (324)
T 2z43_A 171 NVMNNIY-YIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSH 215 (324)
T ss_dssp HHHHTEE-EEECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHH
T ss_pred HHhccEE-EEeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHH
Confidence 0 000 01112332 234566666665 57899999999864
No 425
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.46 E-value=0.00038 Score=57.90 Aligned_cols=29 Identities=21% Similarity=0.269 Sum_probs=24.4
Q ss_pred CCeEEEEEecCCCCHHHHHHHHHhcccCc
Q 024413 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSR 96 (268)
Q Consensus 68 ~g~~v~iiG~~GsGKSTLl~~l~g~~~~~ 96 (268)
.+..+.|.||+|+|||||++.++......
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~ 79 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANEL 79 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 45678999999999999999998876543
No 426
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=97.45 E-value=0.0022 Score=54.79 Aligned_cols=39 Identities=23% Similarity=0.315 Sum_probs=31.9
Q ss_pred EEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC
Q 024413 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV 109 (268)
Q Consensus 71 ~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~ 109 (268)
+++|.|..|+||||+.-.|+......+.++.+.+.|+..
T Consensus 3 vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~q~ 41 (269)
T 1cp2_A 3 QVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKA 41 (269)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTS
T ss_pred EEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCCCC
Confidence 567789999999999999998887666688888777643
No 427
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=97.44 E-value=0.0012 Score=57.53 Aligned_cols=40 Identities=18% Similarity=0.309 Sum_probs=30.8
Q ss_pred CeEEEEEe---cCCCCHHHHHHHHHhcccCcccEEEEecccCC
Q 024413 69 PVIIIVVG---MAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA 108 (268)
Q Consensus 69 g~~v~iiG---~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~ 108 (268)
+.+++|.+ ..|+||||+.-.|+......+.++.+.+.|+.
T Consensus 34 ~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q 76 (298)
T 2oze_A 34 NEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQ 76 (298)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred CcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 45667776 89999999999998877655567877777664
No 428
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.42 E-value=7.1e-05 Score=61.77 Aligned_cols=22 Identities=36% Similarity=0.415 Sum_probs=20.6
Q ss_pred eEEEEEecCCCCHHHHHHHHHh
Q 024413 70 VIIIVVGMAGSGKTTFMHRLVC 91 (268)
Q Consensus 70 ~~v~iiG~~GsGKSTLl~~l~g 91 (268)
.+++|+|++||||||+.+.|++
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999998
No 429
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.40 E-value=6.9e-05 Score=61.72 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=23.1
Q ss_pred CCeEEEEEecCCCCHHHHHHHHHhcc
Q 024413 68 KPVIIIVVGMAGSGKTTFMHRLVCHT 93 (268)
Q Consensus 68 ~g~~v~iiG~~GsGKSTLl~~l~g~~ 93 (268)
...+++|+|++||||||+.+.|++.+
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998865
No 430
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.40 E-value=0.00048 Score=68.87 Aligned_cols=65 Identities=17% Similarity=0.129 Sum_probs=41.6
Q ss_pred hhhhhhccccchhhHHHHHhccccccccccCCCCCCcccccccCCeEEEEEecCCCCHHHHHHHHHhcccC
Q 024413 25 SEESSALKANDKEKEEITESMDKLHIEESSSGLAGSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQS 95 (268)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~ 95 (268)
...+.++-..+..++.+++.+......... -....++.+..++|+||||+|||||+++|++....
T Consensus 200 ~v~~~di~G~~~~~~~l~e~i~~~l~~~~~------~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 200 EVGYDDVGGCRKQLAQIKEMVELPLRHPAL------FKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp SCCGGGCCSCSGGGGHHHHHHHHHHHCGGG------GTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhhCHHH------HHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 344555555566677776655431110000 11112577888999999999999999999997643
No 431
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.39 E-value=2.3e-05 Score=70.18 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=22.5
Q ss_pred eEEEEEecCCCCHHHHHHHHHhcc
Q 024413 70 VIIIVVGMAGSGKTTFMHRLVCHT 93 (268)
Q Consensus 70 ~~v~iiG~~GsGKSTLl~~l~g~~ 93 (268)
..++|+||||+|||||+++|++..
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 568999999999999999999987
No 432
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.38 E-value=0.0001 Score=58.38 Aligned_cols=24 Identities=25% Similarity=0.571 Sum_probs=21.1
Q ss_pred CeEEEEEecCCCCHHHHHHHHHhc
Q 024413 69 PVIIIVVGMAGSGKTTFMHRLVCH 92 (268)
Q Consensus 69 g~~v~iiG~~GsGKSTLl~~l~g~ 92 (268)
..+.+|+|||||||||++.+|.-.
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~ 46 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVG 46 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 458899999999999999999753
No 433
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.38 E-value=8.8e-05 Score=61.02 Aligned_cols=21 Identities=29% Similarity=0.302 Sum_probs=20.2
Q ss_pred EEEEEecCCCCHHHHHHHHHh
Q 024413 71 IIIVVGMAGSGKTTFMHRLVC 91 (268)
Q Consensus 71 ~v~iiG~~GsGKSTLl~~l~g 91 (268)
+++|+|++||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999998
No 434
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.35 E-value=0.0001 Score=60.10 Aligned_cols=29 Identities=24% Similarity=0.437 Sum_probs=24.7
Q ss_pred CeEEEEEecCCCCHHHHHHHHHhcccCcc
Q 024413 69 PVIIIVVGMAGSGKTTFMHRLVCHTQSRN 97 (268)
Q Consensus 69 g~~v~iiG~~GsGKSTLl~~l~g~~~~~~ 97 (268)
-.+++|+|++|||||||++.|.+.....+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g 34 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARG 34 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccC
Confidence 35789999999999999999999865543
No 435
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.35 E-value=0.00016 Score=61.37 Aligned_cols=36 Identities=22% Similarity=0.279 Sum_probs=30.7
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEE
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYV 102 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i 102 (268)
..+|.+++|.|++||||||+++.|...+.. .+.+..
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~ 58 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIM 58 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEE
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCcee
Confidence 458899999999999999999999999877 555543
No 436
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.33 E-value=0.00011 Score=67.15 Aligned_cols=35 Identities=23% Similarity=0.106 Sum_probs=29.1
Q ss_pred cccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEE
Q 024413 65 FKRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYV 102 (268)
Q Consensus 65 ~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i 102 (268)
.+++|.+++|+||||+|||||+++|++.. +|.+..
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~ 199 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALN 199 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEEC
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEE
Confidence 37889999999999999999999999864 454443
No 437
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.33 E-value=0.00014 Score=65.96 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=23.4
Q ss_pred cccCCeEEEEEecCCCCHHHHHHHHHh
Q 024413 65 FKRKPVIIIVVGMAGSGKTTFMHRLVC 91 (268)
Q Consensus 65 ~~~~g~~v~iiG~~GsGKSTLl~~l~g 91 (268)
.+.+| +++|+||||||||||+++|.+
T Consensus 23 ~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 23 NFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp ECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred EEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 35666 999999999999999999997
No 438
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=97.31 E-value=0.002 Score=54.93 Aligned_cols=40 Identities=30% Similarity=0.301 Sum_probs=31.1
Q ss_pred CCeEEEEE-ecCCCCHHHHHHHHHhcccCcccEEEEecccC
Q 024413 68 KPVIIIVV-GMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP 107 (268)
Q Consensus 68 ~g~~v~ii-G~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~ 107 (268)
++.+++|. +..|+||||+.-.|+..+...+.++.+.+.|+
T Consensus 5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 45 (257)
T 1wcv_1 5 KVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDP 45 (257)
T ss_dssp CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCC
Confidence 45677777 57899999999999988765566777777665
No 439
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.26 E-value=0.00096 Score=56.85 Aligned_cols=24 Identities=25% Similarity=0.483 Sum_probs=21.6
Q ss_pred EEEEEecCCCCHHHHHHHHHhccc
Q 024413 71 IIIVVGMAGSGKTTFMHRLVCHTQ 94 (268)
Q Consensus 71 ~v~iiG~~GsGKSTLl~~l~g~~~ 94 (268)
-+.|.||+|+|||||+++|++...
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECcCCCCHHHHHHHHHHHcC
Confidence 488999999999999999998764
No 440
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.24 E-value=0.00098 Score=57.49 Aligned_cols=27 Identities=30% Similarity=0.469 Sum_probs=23.3
Q ss_pred cCCeEEEEEecCCCCHHHHHHHHHhcc
Q 024413 67 RKPVIIIVVGMAGSGKTTFMHRLVCHT 93 (268)
Q Consensus 67 ~~g~~v~iiG~~GsGKSTLl~~l~g~~ 93 (268)
..+.-+.|.||+|+|||||+++++...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 445568999999999999999999865
No 441
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.24 E-value=0.00015 Score=58.61 Aligned_cols=26 Identities=31% Similarity=0.371 Sum_probs=22.8
Q ss_pred CCeEEEEEecCCCCHHHHHHHHHhcc
Q 024413 68 KPVIIIVVGMAGSGKTTFMHRLVCHT 93 (268)
Q Consensus 68 ~g~~v~iiG~~GsGKSTLl~~l~g~~ 93 (268)
+|.+++|+|++||||||+.+.|+..+
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998643
No 442
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.21 E-value=0.0014 Score=60.96 Aligned_cols=26 Identities=19% Similarity=0.225 Sum_probs=22.7
Q ss_pred CeEEEEEecCCCCHHHHHHHHHhccc
Q 024413 69 PVIIIVVGMAGSGKTTFMHRLVCHTQ 94 (268)
Q Consensus 69 g~~v~iiG~~GsGKSTLl~~l~g~~~ 94 (268)
+.-+.|.||+|+|||||++++++...
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~ 155 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVV 155 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 45689999999999999999998763
No 443
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.20 E-value=0.00021 Score=57.31 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=23.0
Q ss_pred CeEEEEEecCCCCHHHHHHHHHhccc
Q 024413 69 PVIIIVVGMAGSGKTTFMHRLVCHTQ 94 (268)
Q Consensus 69 g~~v~iiG~~GsGKSTLl~~l~g~~~ 94 (268)
+.+++|+|++||||||+.+.|.....
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999998653
No 444
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.20 E-value=0.0002 Score=60.84 Aligned_cols=36 Identities=17% Similarity=0.171 Sum_probs=25.9
Q ss_pred EEEEEecCCCCHHHHHHHHHhcccCcccEEEEeccc
Q 024413 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLD 106 (268)
Q Consensus 71 ~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~ 106 (268)
.+.+.|++|+||||++-.++......+..+.+...+
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D 43 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVE 43 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeC
Confidence 478899999999999777776655444455554433
No 445
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.18 E-value=0.0002 Score=56.84 Aligned_cols=23 Identities=26% Similarity=0.223 Sum_probs=20.9
Q ss_pred EEEEEecCCCCHHHHHHHHHhcc
Q 024413 71 IIIVVGMAGSGKTTFMHRLVCHT 93 (268)
Q Consensus 71 ~v~iiG~~GsGKSTLl~~l~g~~ 93 (268)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998764
No 446
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.18 E-value=0.00023 Score=62.62 Aligned_cols=29 Identities=21% Similarity=0.279 Sum_probs=25.0
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhccc
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQ 94 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~ 94 (268)
...+..+.|.||+|+|||||++++++...
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 35667789999999999999999998653
No 447
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.17 E-value=0.0027 Score=56.42 Aligned_cols=61 Identities=15% Similarity=0.178 Sum_probs=37.3
Q ss_pred hhhhhhccccchhhHHHHHhccc-cccccccCCCCCCcccccccCCeEEEEEecCCCCHHHHHHHHHhcc
Q 024413 25 SEESSALKANDKEKEEITESMDK-LHIEESSSGLAGSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHT 93 (268)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~ 93 (268)
...+.++-..+..++.+++.+.. +.....- . ....++.-+.|.||+|+|||+|.++++...
T Consensus 8 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~-----~---~~~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 8 NVKWSDVAGLEGAKEALKEAVILPIKFPHLF-----T---GKRTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCGGGS-----C---TTCCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHhCHHHH-----h---CCCCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 44556666666666666654421 1110000 0 013344668899999999999999999865
No 448
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.17 E-value=0.0029 Score=57.23 Aligned_cols=92 Identities=14% Similarity=0.239 Sum_probs=52.4
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCccc-EEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccc
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNI-RGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTS 144 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 144 (268)
+++|.++.|.|++|+|||||...++.......+ .+|+...... . .. ..+.+++....-....
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~-~------------~~----~a~~~g~~~~~l~i~~ 122 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL-D------------PI----YARKLGVDIDNLLCSQ 122 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC-C------------HH----HHHHTTCCGGGCEEEC
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCc-c------------HH----HHHHcCCChhheeeeC
Confidence 568999999999999999999888865543333 4444432211 0 00 1233444321111100
Q ss_pred hhhhcHHHHHHHHHHHHH--hcCCCEEEEeCCCCcc
Q 024413 145 LNLFTTKFDEVISLIERR--ADHLDYVLVDTPGQIE 178 (268)
Q Consensus 145 ~~~lS~G~~qr~~ia~al--~~~~~illlDePG~~~ 178 (268)
+. +. .+.+.+++.+ ..+++++++|.++...
T Consensus 123 ~~--~~--e~~~~~~~~l~~~~~~~lVVIDsl~~l~ 154 (356)
T 1u94_A 123 PD--TG--EQALEICDALARSGAVDVIVVDSVAALT 154 (356)
T ss_dssp CS--SH--HHHHHHHHHHHHHTCCSEEEEECGGGCC
T ss_pred CC--CH--HHHHHHHHHHHhccCCCEEEEcCHHHhc
Confidence 11 11 2334455544 3579999999998765
No 449
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.16 E-value=0.00018 Score=62.03 Aligned_cols=28 Identities=32% Similarity=0.356 Sum_probs=25.1
Q ss_pred ccC---CeEEEEEecCCCCHHHHHHHHHhcc
Q 024413 66 KRK---PVIIIVVGMAGSGKTTFMHRLVCHT 93 (268)
Q Consensus 66 ~~~---g~~v~iiG~~GsGKSTLl~~l~g~~ 93 (268)
+.+ |.+++|+|++||||||+.+.|++.+
T Consensus 42 i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 42 VKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp THHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred hhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 455 8899999999999999999999854
No 450
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.15 E-value=0.00026 Score=57.57 Aligned_cols=27 Identities=26% Similarity=0.544 Sum_probs=24.1
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhc
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCH 92 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~ 92 (268)
..++.+++|+|++||||||+.+.|+..
T Consensus 7 ~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 7 QPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 456789999999999999999999875
No 451
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.13 E-value=0.00027 Score=57.40 Aligned_cols=35 Identities=31% Similarity=0.336 Sum_probs=27.7
Q ss_pred eEEEEEecCCCCHHHHHHHHHhcccCcccEEEEec
Q 024413 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMN 104 (268)
Q Consensus 70 ~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~ 104 (268)
.+++|+|++|||||||+..|...+......+.+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 57899999999999999999998765544444433
No 452
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.13 E-value=0.0003 Score=56.96 Aligned_cols=27 Identities=37% Similarity=0.593 Sum_probs=23.5
Q ss_pred cCCeEEEEEecCCCCHHHHHHHHHhcc
Q 024413 67 RKPVIIIVVGMAGSGKTTFMHRLVCHT 93 (268)
Q Consensus 67 ~~g~~v~iiG~~GsGKSTLl~~l~g~~ 93 (268)
.++.+++|+|++||||||+.+.|...+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999998754
No 453
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.13 E-value=0.00094 Score=58.22 Aligned_cols=35 Identities=17% Similarity=0.134 Sum_probs=28.3
Q ss_pred CCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEE
Q 024413 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYV 102 (268)
Q Consensus 68 ~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i 102 (268)
+...+.|.||+|+||||+.++|++......+.+..
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~ 80 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIR 80 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEE
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEE
Confidence 34578999999999999999999988776554433
No 454
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.11 E-value=0.00027 Score=57.06 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=22.8
Q ss_pred CeEEEEEecCCCCHHHHHHHHHhccc
Q 024413 69 PVIIIVVGMAGSGKTTFMHRLVCHTQ 94 (268)
Q Consensus 69 g~~v~iiG~~GsGKSTLl~~l~g~~~ 94 (268)
+.+++|.|++||||||+.+.|+..+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999999987543
No 455
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=97.11 E-value=0.0014 Score=57.07 Aligned_cols=38 Identities=29% Similarity=0.340 Sum_probs=29.3
Q ss_pred eEEEEE-ecCCCCHHHHHHHHHhcccCcccEEEEecccC
Q 024413 70 VIIIVV-GMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP 107 (268)
Q Consensus 70 ~~v~ii-G~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~ 107 (268)
.+++|. +..|+||||+.-.|+..+...+.++.+.+.|+
T Consensus 5 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 43 (286)
T 2xj4_A 5 RVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDL 43 (286)
T ss_dssp EEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 356665 57899999999999888766666787777766
No 456
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.08 E-value=0.0026 Score=58.60 Aligned_cols=28 Identities=29% Similarity=0.713 Sum_probs=24.0
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcc
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHT 93 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~ 93 (268)
...+.+++|+|++||||||+.+.|+...
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 4467899999999999999999998643
No 457
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.07 E-value=0.00014 Score=60.03 Aligned_cols=31 Identities=23% Similarity=0.366 Sum_probs=25.6
Q ss_pred EEEEEecCCCCHHHHHHHHHhcccCcccEEE
Q 024413 71 IIIVVGMAGSGKTTFMHRLVCHTQSRNIRGY 101 (268)
Q Consensus 71 ~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~ 101 (268)
+++|.|++||||||+++.|...+...+..+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~ 32 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVA 32 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 6899999999999999999988765544443
No 458
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=97.07 E-value=0.0046 Score=53.61 Aligned_cols=40 Identities=23% Similarity=0.305 Sum_probs=31.8
Q ss_pred eEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCC
Q 024413 70 VIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAV 109 (268)
Q Consensus 70 ~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~ 109 (268)
.+++|.|..|+||||+.-.|+..+...+.++.+.+.|+..
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~q~ 42 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKA 42 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSSS
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 3567789999999999999998876556678887777643
No 459
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.06 E-value=0.0065 Score=55.11 Aligned_cols=93 Identities=15% Similarity=0.256 Sum_probs=52.2
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccCCCCCcccccccchhhHHHHHHHHHHcCCCCCCCcccch
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPAVMTLPFAANIDIRDTIRYKEVMKQFNLGPNGGILTSL 145 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 145 (268)
+++|.++.|.|++|+|||||...++.......+.+.+...+.... .. ..+.+++....-....+
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~------------~~----~a~~~g~d~~~l~i~~~ 134 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALD------------PV----YARALGVNTDELLVSQP 134 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC------------HH----HHHHTTCCGGGCEEECC
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChh------------HH----HHHHcCCCHHHceeecC
Confidence 568899999999999999999887765433333443333221110 00 12344443221111111
Q ss_pred hhhcHHHHHHHHHHHHHh--cCCCEEEEeCCCCcc
Q 024413 146 NLFTTKFDEVISLIERRA--DHLDYVLVDTPGQIE 178 (268)
Q Consensus 146 ~~lS~G~~qr~~ia~al~--~~~~illlDePG~~~ 178 (268)
. +. .+.+.+++.+. .+++++++|..+...
T Consensus 135 ~--~~--e~~l~~l~~l~~~~~~~lVVIDsl~~l~ 165 (366)
T 1xp8_A 135 D--NG--EQALEIMELLVRSGAIDVVVVDSVAALT 165 (366)
T ss_dssp S--SH--HHHHHHHHHHHTTTCCSEEEEECTTTCC
T ss_pred C--cH--HHHHHHHHHHHhcCCCCEEEEeChHHhc
Confidence 1 11 23445555554 468999999998764
No 460
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.06 E-value=0.00034 Score=58.14 Aligned_cols=25 Identities=24% Similarity=0.531 Sum_probs=21.3
Q ss_pred CeEEEEEecCCCCHHHHHHHHHhcc
Q 024413 69 PVIIIVVGMAGSGKTTFMHRLVCHT 93 (268)
Q Consensus 69 g~~v~iiG~~GsGKSTLl~~l~g~~ 93 (268)
..+.+|+|||||||||++.+|.-..
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 4688999999999999999986443
No 461
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=97.06 E-value=0.0052 Score=55.62 Aligned_cols=41 Identities=15% Similarity=0.302 Sum_probs=31.5
Q ss_pred ccCCeEEEEEe-cCCCCHHHHHHHHHhcccCcccEEEEeccc
Q 024413 66 KRKPVIIIVVG-MAGSGKTTFMHRLVCHTQSRNIRGYVMNLD 106 (268)
Q Consensus 66 ~~~g~~v~iiG-~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~ 106 (268)
..++.+++|+| ..|+||||+.-.|+......+.++.+.+.|
T Consensus 140 ~~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D 181 (373)
T 3fkq_A 140 NDKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIE 181 (373)
T ss_dssp TTSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred CCCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 35677888886 899999999988887765555567776666
No 462
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.06 E-value=0.00029 Score=55.61 Aligned_cols=20 Identities=45% Similarity=0.853 Sum_probs=18.6
Q ss_pred eEEEEEecCCCCHHHHHHHH
Q 024413 70 VIIIVVGMAGSGKTTFMHRL 89 (268)
Q Consensus 70 ~~v~iiG~~GsGKSTLl~~l 89 (268)
.+++|.|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
No 463
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.05 E-value=0.00038 Score=56.94 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=23.7
Q ss_pred CCeEEEEEecCCCCHHHHHHHHHhcc
Q 024413 68 KPVIIIVVGMAGSGKTTFMHRLVCHT 93 (268)
Q Consensus 68 ~g~~v~iiG~~GsGKSTLl~~l~g~~ 93 (268)
+|.+++|.|++||||||+.+.|...+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57789999999999999999999875
No 464
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.05 E-value=0.0014 Score=60.89 Aligned_cols=66 Identities=15% Similarity=0.160 Sum_probs=41.9
Q ss_pred cchhhhhhccccchhhHHHHHhccc-cccccccCCCCCCcccccccCCeEEEEEecCCCCHHHHHHHHHhcccC
Q 024413 23 MESEESSALKANDKEKEEITESMDK-LHIEESSSGLAGSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQS 95 (268)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~ 95 (268)
.+.+.+.++-.-+..++.+++.+.- +.....- ...-+++..=+.+.||||+|||+|.+++++....
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f-------~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~ 241 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIF-------QRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGA 241 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHH-------HHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHH-------HhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 4556677777667777777665543 1110000 0011445556889999999999999999987543
No 465
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.04 E-value=0.0022 Score=56.60 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=23.0
Q ss_pred CeEEEEEecCCCCHHHHHHHHHhcccC
Q 024413 69 PVIIIVVGMAGSGKTTFMHRLVCHTQS 95 (268)
Q Consensus 69 g~~v~iiG~~GsGKSTLl~~l~g~~~~ 95 (268)
+..+.|.||+|+|||||++.+++....
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~ 63 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKK 63 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHH
Confidence 345789999999999999999987644
No 466
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.04 E-value=0.0025 Score=55.53 Aligned_cols=28 Identities=21% Similarity=0.316 Sum_probs=23.2
Q ss_pred cCCeEEEEEecCCCCHHHHHHHHHhccc
Q 024413 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQ 94 (268)
Q Consensus 67 ~~g~~v~iiG~~GsGKSTLl~~l~g~~~ 94 (268)
..+.-+.|.||+|+||||+.+.++....
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3455689999999999999998887653
No 467
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=97.03 E-value=0.0011 Score=55.42 Aligned_cols=39 Identities=31% Similarity=0.371 Sum_probs=29.0
Q ss_pred eEEEEE-ecCCCCHHHHHHHHHhcccCcccEEEEecccCC
Q 024413 70 VIIIVV-GMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDPA 108 (268)
Q Consensus 70 ~~v~ii-G~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~~ 108 (268)
.+++|. +..|+||||+.-.|+......+.++.+.+.|+.
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 42 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLT 42 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCC
Confidence 455665 468999999999999887655567777776654
No 468
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.03 E-value=0.0014 Score=60.80 Aligned_cols=68 Identities=22% Similarity=0.196 Sum_probs=42.6
Q ss_pred ccchhhhhhccccchhhHHHHHhccccccccccCCCCCCcccccccCCeEEEEEecCCCCHHHHHHHHHhcccC
Q 024413 22 QMESEESSALKANDKEKEEITESMDKLHIEESSSGLAGSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQS 95 (268)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~ 95 (268)
..+...|.++-.-+..++.+++.+...-..... -...-++...-+.+.||||+|||+|.+++++....
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~------f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~ 241 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADK------FKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNA 241 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHH------HHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHH------HHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCC
Confidence 345566777777777777777654321110000 00011445566889999999999999999997543
No 469
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.03 E-value=0.00031 Score=57.88 Aligned_cols=22 Identities=32% Similarity=0.721 Sum_probs=19.8
Q ss_pred EEEEecCCCCHHHHHHHHHhcc
Q 024413 72 IIVVGMAGSGKTTFMHRLVCHT 93 (268)
Q Consensus 72 v~iiG~~GsGKSTLl~~l~g~~ 93 (268)
++|+||+|||||||++.|....
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999999998654
No 470
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.02 E-value=0.00039 Score=55.50 Aligned_cols=22 Identities=36% Similarity=0.762 Sum_probs=20.4
Q ss_pred eEEEEEecCCCCHHHHHHHHHh
Q 024413 70 VIIIVVGMAGSGKTTFMHRLVC 91 (268)
Q Consensus 70 ~~v~iiG~~GsGKSTLl~~l~g 91 (268)
.+++|.|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999987
No 471
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.99 E-value=0.0024 Score=56.98 Aligned_cols=28 Identities=25% Similarity=0.501 Sum_probs=23.6
Q ss_pred CCeEEEEEecCCCCHHHHHHHHHhcccC
Q 024413 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQS 95 (268)
Q Consensus 68 ~g~~v~iiG~~GsGKSTLl~~l~g~~~~ 95 (268)
.+..+.|.||+|+|||||++.++.....
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4556899999999999999999987643
No 472
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.98 E-value=0.00045 Score=56.64 Aligned_cols=28 Identities=32% Similarity=0.372 Sum_probs=24.5
Q ss_pred CCeEEEEEecCCCCHHHHHHHHHhcccC
Q 024413 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQS 95 (268)
Q Consensus 68 ~g~~v~iiG~~GsGKSTLl~~l~g~~~~ 95 (268)
+|.+++|.|++||||||+.+.|+..+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4678999999999999999999986654
No 473
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.97 E-value=0.00048 Score=56.67 Aligned_cols=27 Identities=33% Similarity=0.351 Sum_probs=24.0
Q ss_pred cCCeEEEEEecCCCCHHHHHHHHHhcc
Q 024413 67 RKPVIIIVVGMAGSGKTTFMHRLVCHT 93 (268)
Q Consensus 67 ~~g~~v~iiG~~GsGKSTLl~~l~g~~ 93 (268)
.+|.+++|.|++||||||+.+.|...+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998754
No 474
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.97 E-value=0.00048 Score=57.24 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=21.9
Q ss_pred CCeEEEEEecCCCCHHHHHHHHHh
Q 024413 68 KPVIIIVVGMAGSGKTTFMHRLVC 91 (268)
Q Consensus 68 ~g~~v~iiG~~GsGKSTLl~~l~g 91 (268)
++.+++|+|++||||||+.+.|..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999987
No 475
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.97 E-value=0.00048 Score=55.85 Aligned_cols=27 Identities=44% Similarity=0.557 Sum_probs=23.5
Q ss_pred cCCeEEEEEecCCCCHHHHHHHHHhcc
Q 024413 67 RKPVIIIVVGMAGSGKTTFMHRLVCHT 93 (268)
Q Consensus 67 ~~g~~v~iiG~~GsGKSTLl~~l~g~~ 93 (268)
.++.+++|+|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998654
No 476
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=96.96 E-value=0.0096 Score=57.12 Aligned_cols=41 Identities=22% Similarity=0.355 Sum_probs=31.9
Q ss_pred cCCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEecccC
Q 024413 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMNLDP 107 (268)
Q Consensus 67 ~~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~~~~ 107 (268)
....++.+.|..|+||||+.-.++......+.++.+.+.|+
T Consensus 6 ~~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~ 46 (589)
T 1ihu_A 6 NIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDP 46 (589)
T ss_dssp SCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CCCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 34567889999999999998888877655555777777665
No 477
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.95 E-value=0.016 Score=54.49 Aligned_cols=30 Identities=20% Similarity=0.236 Sum_probs=25.6
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcccC
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHTQS 95 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~ 95 (268)
..+|.++.|.|++|+|||||+..++-....
T Consensus 239 l~~G~l~li~G~pG~GKT~lal~~a~~~a~ 268 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMSTFVRQQALQWGT 268 (503)
T ss_dssp CCTTCEEEEEESSCHHHHHHHHHHHHHHTT
T ss_pred cCCCeEEEEeecCCCCchHHHHHHHHHHHH
Confidence 678999999999999999998887765443
No 478
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.95 E-value=0.00048 Score=58.21 Aligned_cols=28 Identities=32% Similarity=0.338 Sum_probs=24.3
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcc
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHT 93 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~ 93 (268)
..++.+++|+|++||||||+.+.|++.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 5678899999999999999999999743
No 479
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.95 E-value=0.00051 Score=56.55 Aligned_cols=28 Identities=29% Similarity=0.438 Sum_probs=24.5
Q ss_pred cCCeEEEEEecCCCCHHHHHHHHHhccc
Q 024413 67 RKPVIIIVVGMAGSGKTTFMHRLVCHTQ 94 (268)
Q Consensus 67 ~~g~~v~iiG~~GsGKSTLl~~l~g~~~ 94 (268)
++|.+++|.|++||||||+.+.|...+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999987643
No 480
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.93 E-value=0.01 Score=48.61 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=22.4
Q ss_pred eEEEEEecCCCCHHHHHHHHHhcccC
Q 024413 70 VIIIVVGMAGSGKTTFMHRLVCHTQS 95 (268)
Q Consensus 70 ~~v~iiG~~GsGKSTLl~~l~g~~~~ 95 (268)
..+.|.||+|+|||||++.++.....
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 47899999999999999999876543
No 481
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.93 E-value=0.00059 Score=55.63 Aligned_cols=26 Identities=38% Similarity=0.571 Sum_probs=23.2
Q ss_pred cCCeEEEEEecCCCCHHHHHHHHHhc
Q 024413 67 RKPVIIIVVGMAGSGKTTFMHRLVCH 92 (268)
Q Consensus 67 ~~g~~v~iiG~~GsGKSTLl~~l~g~ 92 (268)
.+..+++|+|++||||||+.+.|+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45678999999999999999999975
No 482
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.91 E-value=0.0005 Score=55.34 Aligned_cols=27 Identities=30% Similarity=0.377 Sum_probs=23.2
Q ss_pred cCCeEEEEEecCCCCHHHHHHHHHhcc
Q 024413 67 RKPVIIIVVGMAGSGKTTFMHRLVCHT 93 (268)
Q Consensus 67 ~~g~~v~iiG~~GsGKSTLl~~l~g~~ 93 (268)
.++..++|+|++||||||+.+.|+..+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 456788999999999999999998543
No 483
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.90 E-value=0.002 Score=59.28 Aligned_cols=68 Identities=21% Similarity=0.238 Sum_probs=43.7
Q ss_pred CccchhhhhhccccchhhHHHHHhccc-cccccccCCCCCCcccccccCCeEEEEEecCCCCHHHHHHHHHhcccC
Q 024413 21 TQMESEESSALKANDKEKEEITESMDK-LHIEESSSGLAGSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQS 95 (268)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~ 95 (268)
...+.+.|.++-.-+..++++++.+.- +.....- ...-+++..=+.+.||||+|||+|.+++++....
T Consensus 140 ~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f-------~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~ 208 (405)
T 4b4t_J 140 EKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELF-------ESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDC 208 (405)
T ss_dssp ECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHH-------HHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTC
T ss_pred cCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHH-------HhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCC
Confidence 344567778887777888888776543 2211000 0001333444789999999999999999987543
No 484
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.90 E-value=0.0005 Score=56.01 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.5
Q ss_pred EEEEEecCCCCHHHHHHHHHhccc
Q 024413 71 IIIVVGMAGSGKTTFMHRLVCHTQ 94 (268)
Q Consensus 71 ~v~iiG~~GsGKSTLl~~l~g~~~ 94 (268)
+++|.|++||||||+.+.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999998653
No 485
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.90 E-value=0.0036 Score=53.00 Aligned_cols=27 Identities=22% Similarity=0.420 Sum_probs=22.7
Q ss_pred cCCeEEEEEecCCCCHHHHHHHHHhcc
Q 024413 67 RKPVIIIVVGMAGSGKTTFMHRLVCHT 93 (268)
Q Consensus 67 ~~g~~v~iiG~~GsGKSTLl~~l~g~~ 93 (268)
..+.-+.|.||+|+||||+.+.++...
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 344557899999999999999999865
No 486
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.89 E-value=0.00055 Score=55.18 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=22.1
Q ss_pred CeEEEEEecCCCCHHHHHHHHHhcc
Q 024413 69 PVIIIVVGMAGSGKTTFMHRLVCHT 93 (268)
Q Consensus 69 g~~v~iiG~~GsGKSTLl~~l~g~~ 93 (268)
+..++|+|++||||||+.+.|+..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5678999999999999999998654
No 487
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.89 E-value=0.00057 Score=55.17 Aligned_cols=25 Identities=36% Similarity=0.619 Sum_probs=22.0
Q ss_pred CeEEEEEecCCCCHHHHHHHHHhcc
Q 024413 69 PVIIIVVGMAGSGKTTFMHRLVCHT 93 (268)
Q Consensus 69 g~~v~iiG~~GsGKSTLl~~l~g~~ 93 (268)
+.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999997643
No 488
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=96.89 E-value=0.016 Score=52.15 Aligned_cols=39 Identities=31% Similarity=0.344 Sum_probs=31.8
Q ss_pred eEEEEEecCCCCHHHHHHHHHhccc--CcccEEEEecccCC
Q 024413 70 VIIIVVGMAGSGKTTFMHRLVCHTQ--SRNIRGYVMNLDPA 108 (268)
Q Consensus 70 ~~v~iiG~~GsGKSTLl~~l~g~~~--~~~g~i~i~~~~~~ 108 (268)
.++++.|..|+||||+.-.|+-... ..+.++.+.+.|+.
T Consensus 19 ~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~~ 59 (354)
T 2woj_A 19 KWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPA 59 (354)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC
Confidence 5677789999999999999888776 66678888777764
No 489
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.86 E-value=0.00055 Score=60.02 Aligned_cols=28 Identities=29% Similarity=0.462 Sum_probs=24.3
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcc
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHT 93 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~ 93 (268)
...+.+++|.||+||||||+.+.|....
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3457899999999999999999998754
No 490
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.86 E-value=0.00062 Score=54.86 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=21.7
Q ss_pred EEEEEecCCCCHHHHHHHHHhccc
Q 024413 71 IIIVVGMAGSGKTTFMHRLVCHTQ 94 (268)
Q Consensus 71 ~v~iiG~~GsGKSTLl~~l~g~~~ 94 (268)
+++|.|++||||||+.+.|...+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999988654
No 491
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.84 E-value=0.002 Score=60.15 Aligned_cols=66 Identities=20% Similarity=0.177 Sum_probs=41.7
Q ss_pred cchhhhhhccccchhhHHHHHhccc-cccccccCCCCCCcccccccCCeEEEEEecCCCCHHHHHHHHHhcccC
Q 024413 23 MESEESSALKANDKEKEEITESMDK-LHIEESSSGLAGSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQS 95 (268)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~ 95 (268)
.+.+.+.++-.-+..++++++.+.- +.....- ...-++...=+.+.||+|+|||+|.+++++....
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f-------~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~ 269 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERF-------ATLGIDPPKGILLYGPPGTGKTLCARAVANRTDA 269 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHH-------HHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTC
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHH-------HHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCC
Confidence 4456666666666777777765532 1110000 0011445566889999999999999999987543
No 492
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.83 E-value=0.00061 Score=62.05 Aligned_cols=37 Identities=14% Similarity=0.186 Sum_probs=31.5
Q ss_pred CCeEEEEEecCCCCHHHHHHHHHhcccCcccEEEEec
Q 024413 68 KPVIIIVVGMAGSGKTTFMHRLVCHTQSRNIRGYVMN 104 (268)
Q Consensus 68 ~g~~v~iiG~~GsGKSTLl~~l~g~~~~~~g~i~i~~ 104 (268)
.+.-++|+|++||||||+++.|+.......+.+++.+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D 70 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID 70 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 4566899999999999999999998887777777755
No 493
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.82 E-value=0.0033 Score=58.29 Aligned_cols=67 Identities=18% Similarity=0.218 Sum_probs=42.2
Q ss_pred ccchhhhhhccccchhhHHHHHhccccccccccCCCCCCcccccccCCeEEEEEecCCCCHHHHHHHHHhccc
Q 024413 22 QMESEESSALKANDKEKEEITESMDKLHIEESSSGLAGSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQ 94 (268)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~ 94 (268)
..+.+.+.++-.-+..++.+++.+.-.-..... -...-++...=+.+.||||+|||+|.+++++...
T Consensus 165 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~------~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~ 231 (428)
T 4b4t_K 165 EKPDVTYADVGGLDMQKQEIREAVELPLVQADL------YEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTK 231 (428)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHH------HHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHT
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHH------HHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 344566777777777777777755431110000 0000134445588999999999999999998754
No 494
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.81 E-value=0.00065 Score=58.33 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=20.9
Q ss_pred EEEEEecCCCCHHHHHHHHHhcc
Q 024413 71 IIIVVGMAGSGKTTFMHRLVCHT 93 (268)
Q Consensus 71 ~v~iiG~~GsGKSTLl~~l~g~~ 93 (268)
+++|+||+|||||||.+.|++..
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999998764
No 495
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.81 E-value=0.00072 Score=56.30 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=23.0
Q ss_pred CCeEEEEEecCCCCHHHHHHHHHhcc
Q 024413 68 KPVIIIVVGMAGSGKTTFMHRLVCHT 93 (268)
Q Consensus 68 ~g~~v~iiG~~GsGKSTLl~~l~g~~ 93 (268)
++.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 46789999999999999999998754
No 496
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.81 E-value=0.0014 Score=57.37 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=22.7
Q ss_pred cCCeEEEEEecCCCCHHHHHHHHHhcc
Q 024413 67 RKPVIIIVVGMAGSGKTTFMHRLVCHT 93 (268)
Q Consensus 67 ~~g~~v~iiG~~GsGKSTLl~~l~g~~ 93 (268)
+.+..+.|.||+|+|||+|.++++...
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 444567788999999999999999865
No 497
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.80 E-value=0.00055 Score=58.41 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=22.3
Q ss_pred CCeEEEEEecCCCCHHHHHHHHHhcc
Q 024413 68 KPVIIIVVGMAGSGKTTFMHRLVCHT 93 (268)
Q Consensus 68 ~g~~v~iiG~~GsGKSTLl~~l~g~~ 93 (268)
.+.+++|.||+||||||+.+.|+..+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998654
No 498
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.79 E-value=0.0029 Score=58.55 Aligned_cols=67 Identities=24% Similarity=0.278 Sum_probs=43.9
Q ss_pred ccchhhhhhccccchhhHHHHHhccc-cccccccCCCCCCcccccccCCeEEEEEecCCCCHHHHHHHHHhcccC
Q 024413 22 QMESEESSALKANDKEKEEITESMDK-LHIEESSSGLAGSSSINFKRKPVIIIVVGMAGSGKTTFMHRLVCHTQS 95 (268)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~v~iiG~~GsGKSTLl~~l~g~~~~ 95 (268)
..+.+.+.++-.-+..++++++.+.- +..... -...-++...=+.+.||+|+|||+|.+++++....
T Consensus 175 ~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~-------f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~ 242 (437)
T 4b4t_I 175 KSPTESYSDIGGLESQIQEIKESVELPLTHPEL-------YEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSA 242 (437)
T ss_dssp SSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHH-------HHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTC
T ss_pred cCCCCcceecCcHHHHHHHHHHHHHHHHhCHHH-------HHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCC
Confidence 34566777777777888888776543 111000 00111344556889999999999999999987543
No 499
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.79 E-value=0.00074 Score=56.92 Aligned_cols=28 Identities=39% Similarity=0.463 Sum_probs=25.1
Q ss_pred ccCCeEEEEEecCCCCHHHHHHHHHhcc
Q 024413 66 KRKPVIIIVVGMAGSGKTTFMHRLVCHT 93 (268)
Q Consensus 66 ~~~g~~v~iiG~~GsGKSTLl~~l~g~~ 93 (268)
.++..++.|+|||||||+|..+.|+..+
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 5678899999999999999999998765
No 500
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.78 E-value=0.00057 Score=54.76 Aligned_cols=23 Identities=35% Similarity=0.570 Sum_probs=20.7
Q ss_pred EEEEEecCCCCHHHHHHHHHhcc
Q 024413 71 IIIVVGMAGSGKTTFMHRLVCHT 93 (268)
Q Consensus 71 ~v~iiG~~GsGKSTLl~~l~g~~ 93 (268)
+++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 47999999999999999998754
Done!