BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024414
(268 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1F9Z|A Chain A, Crystal Structure Of The Ni(Ii)-Bound Glyoxalase I From
Escherichia Coli
pdb|1F9Z|B Chain B, Crystal Structure Of The Ni(Ii)-Bound Glyoxalase I From
Escherichia Coli
pdb|1FA5|A Chain A, Crystal Structure Of The Zn(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA5|B Chain B, Crystal Structure Of The Zn(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA6|A Chain A, Crystal Structure Of The Co(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA6|B Chain B, Crystal Structure Of The Co(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA7|A Chain A, Crystal Structure Of Cd(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA7|B Chain B, Crystal Structure Of Cd(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA8|A Chain A, Crystal Structure Of The Apo Form Glyoxalase I Of
Escherichia Coli
pdb|1FA8|B Chain B, Crystal Structure Of The Apo Form Glyoxalase I Of
Escherichia Coli
Length = 135
Score = 171 bits (433), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 79/124 (63%), Positives = 97/124 (78%)
Query: 100 RMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNY 159
R+LH + RVGDL R+I FYT+ LGMKLLR + PE KY+ AF+GYGPE VIELTYN+
Sbjct: 2 RLLHTMLRVGDLQRSIDFYTKVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNW 61
Query: 160 GVDKYDIGTGFGHFGIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKF 219
GVDKY++GT +GH ++VD+ A+ E I+ GG VTRE GPVKGG TVIAF+EDPDGYK
Sbjct: 62 GVDKYELGTAYGHIALSVDNAAEACEKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKI 121
Query: 220 ELLE 223
EL+E
Sbjct: 122 ELIE 125
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 27/36 (75%)
Query: 231 LCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYK 266
L MLRVGDL RSI+FY + GM+LLR +NPEYK
Sbjct: 3 LLHTMLRVGDLQRSIDFYTKVLGMKLLRTSENPEYK 38
>pdb|2C21|A Chain A, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|B Chain B, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|C Chain C, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|D Chain D, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|E Chain E, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|F Chain F, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
Length = 144
Score = 127 bits (320), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 67/124 (54%), Positives = 82/124 (66%), Gaps = 5/124 (4%)
Query: 99 RRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYN 158
RRMLH + RVGDLDR+IKFYTE LGMK+LRK D+PE+KYT FLGYGPE S V+ELTYN
Sbjct: 7 RRMLHTMIRVGDLDRSIKFYTERLGMKVLRKWDVPEDKYTLVFLGYGPEMSSTVLELTYN 66
Query: 159 YGVDKYDIGTGFGHFGIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYK 218
YGV Y +GH I V+DV + V ++ + E + +AF+ DPDGY
Sbjct: 67 YGVTSYKHDEAYGHIAIGVEDVKELVADMRKHDVPIDYED-----ESGFMAFVVDPDGYY 121
Query: 219 FELL 222
ELL
Sbjct: 122 IELL 125
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 26/36 (72%)
Query: 231 LCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYK 266
+ M+RVGDLDRSI FY + GM++LRK D PE K
Sbjct: 9 MLHTMIRVGDLDRSIKFYTERLGMKVLRKWDVPEDK 44
>pdb|3ZI1|A Chain A, Crystal Structure Of Human Glyoxalase Domain-containing
Protein 4 (glod4)
Length = 330
Score = 99.8 bits (247), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 89/182 (48%), Gaps = 22/182 (12%)
Query: 99 RRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEE-----------KYTNAFLGYGPE 147
RR LH V++VG+ +T +FY + LGMK+LR + E K++ +G+GPE
Sbjct: 26 RRALHFVFKVGNRFQTARFYRDVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMVGFGPE 85
Query: 148 DSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTV 207
D HFV ELTYNYGV Y +G F +A ++ P+
Sbjct: 86 DDHFVAELTYNYGVGDYKLGNDFMGITLASSQAVSNARKLEW----------PLTEVAEG 135
Query: 208 IAFIEDPDGYKFELLERG-PTPEPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYK 266
+ E P GYKF L R P +P+ +V L V DL +S+N++ GM++ + +
Sbjct: 136 VFETEAPGGYKFYLQNRSLPQSDPVLKVTLAVSDLQKSLNYWCNLLGMKIYENDEEKQRA 195
Query: 267 VL 268
+L
Sbjct: 196 LL 197
>pdb|2ZA0|A Chain A, Crystal Structure Of Mouse Glyoxalase I Complexed With
Methyl-Gerfelin
pdb|2ZA0|B Chain B, Crystal Structure Of Mouse Glyoxalase I Complexed With
Methyl-Gerfelin
Length = 184
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 74/148 (50%), Gaps = 30/148 (20%)
Query: 101 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYG-----PEDSH----- 150
+ + R+ D +++ FYT LG+ LL+K D P K++ FL Y P+D
Sbjct: 32 LQQTMLRIKDPKKSLDFYTRVLGLTLLQKLDFPAMKFSLYFLAYEDKNDIPKDKSEKTAW 91
Query: 151 -----FVIELTYNYGVD-----KYDIGT----GFGHFGIAVDDVAKTVELIKAKGGKVTR 196
+ELT+N+G + Y G GFGH GIAV DV + + G K +
Sbjct: 92 TFSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVK 151
Query: 197 EP--GPVKGGNTVIAFIEDPDGYKFELL 222
+P G +KG +AFI+DPDGY E+L
Sbjct: 152 KPDDGKMKG----LAFIQDPDGYWIEIL 175
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 11/73 (15%)
Query: 197 EPGPVKGG---NTVIAFIEDPDGYKFELLERGPTPEPLCQVMLRVGDLDRSINFYEQAFG 253
EP P G T + DPD + L L Q MLR+ D +S++FY + G
Sbjct: 3 EPQPASSGLTDETAFSCCSDPDPSTKDFL--------LQQTMLRIKDPKKSLDFYTRVLG 54
Query: 254 MELLRKRDNPEYK 266
+ LL+K D P K
Sbjct: 55 LTLLQKLDFPAMK 67
>pdb|1FRO|A Chain A, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|B Chain B, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|C Chain C, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|D Chain D, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1QIN|A Chain A, Human Glyoxalase I Complexed With S-(N-Hydroxy-N-P-
Iodophenylcarbamoyl) Glutathione
pdb|1QIN|B Chain B, Human Glyoxalase I Complexed With S-(N-Hydroxy-N-P-
Iodophenylcarbamoyl) Glutathione
pdb|1QIP|A Chain A, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|B Chain B, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|C Chain C, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|D Chain D, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
Length = 183
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 75/150 (50%), Gaps = 34/150 (22%)
Query: 101 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFV-------- 152
+ + RV D +++ FYT LGM L++K D P K++ FL Y ED + +
Sbjct: 31 LQQTMLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAY--EDKNDIPKEKDEKI 88
Query: 153 ---------IELTYNYGVD-----KYDIGT----GFGHFGIAVDDVAKTVELIKAKGGKV 194
+ELT+N+G + Y G GFGH GIAV DV + + G K
Sbjct: 89 AWALSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKF 148
Query: 195 TREP--GPVKGGNTVIAFIEDPDGYKFELL 222
++P G +KG +AFI+DPDGY E+L
Sbjct: 149 VKKPDDGKMKG----LAFIQDPDGYWIEIL 174
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 11/70 (15%)
Query: 197 EPGPVKGGNT---VIAFIEDPDGYKFELLERGPTPEPLCQVMLRVGDLDRSINFYEQAFG 253
EP P GG T ++ D D + L L Q MLRV D +S++FY + G
Sbjct: 2 EPQPPSGGLTDEAALSCCSDADPSTKDFL--------LQQTMLRVKDPKKSLDFYTRVLG 53
Query: 254 MELLRKRDNP 263
M L++K D P
Sbjct: 54 MTLIQKCDFP 63
>pdb|3VW9|A Chain A, Human Glyoxalase I With An N-Hydroxypyridone Inhibitor
pdb|3VW9|B Chain B, Human Glyoxalase I With An N-Hydroxypyridone Inhibitor
Length = 187
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 75/150 (50%), Gaps = 34/150 (22%)
Query: 101 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFV-------- 152
+ + RV D +++ FYT LGM L++K D P K++ FL Y ED + +
Sbjct: 35 LQQTMLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAY--EDKNDIPKEKDEKI 92
Query: 153 ---------IELTYNYGVD-----KYDIGT----GFGHFGIAVDDVAKTVELIKAKGGKV 194
+ELT+N+G + Y G GFGH GIAV DV + + G K
Sbjct: 93 AWALSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKF 152
Query: 195 TREP--GPVKGGNTVIAFIEDPDGYKFELL 222
++P G +KG +AFI+DPDGY E+L
Sbjct: 153 VKKPDDGKMKG----LAFIQDPDGYWIEIL 178
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 11/75 (14%)
Query: 192 GKVTREPGPVKGGNT---VIAFIEDPDGYKFELLERGPTPEPLCQVMLRVGDLDRSINFY 248
G EP P GG T ++ D D + L L Q MLRV D +S++FY
Sbjct: 1 GSHMAEPQPPSGGLTDEAALSCCSDADPSTKDFL--------LQQTMLRVKDPKKSLDFY 52
Query: 249 EQAFGMELLRKRDNP 263
+ GM L++K D P
Sbjct: 53 TRVLGMTLIQKCDFP 67
>pdb|1BH5|A Chain A, Human Glyoxalase I Q33e, E172q Double Mutant
pdb|1BH5|B Chain B, Human Glyoxalase I Q33e, E172q Double Mutant
pdb|1BH5|C Chain C, Human Glyoxalase I Q33e, E172q Double Mutant
pdb|1BH5|D Chain D, Human Glyoxalase I Q33e, E172q Double Mutant
Length = 183
Score = 70.9 bits (172), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 75/150 (50%), Gaps = 34/150 (22%)
Query: 101 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFV-------- 152
+ + RV D +++ FYT LGM L++K D P K++ FL Y ED + +
Sbjct: 31 LQETMLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAY--EDKNDIPKEKDEKI 88
Query: 153 ---------IELTYNYGVD-----KYDIGT----GFGHFGIAVDDVAKTVELIKAKGGKV 194
+ELT+N+G + Y G GFGH GIAV DV + + G K
Sbjct: 89 AWALSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKF 148
Query: 195 TREP--GPVKGGNTVIAFIEDPDGYKFELL 222
++P G +KG +AFI+DPDGY ++L
Sbjct: 149 VKKPDDGKMKG----LAFIQDPDGYWIQIL 174
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 11/70 (15%)
Query: 197 EPGPVKGGNT---VIAFIEDPDGYKFELLERGPTPEPLCQVMLRVGDLDRSINFYEQAFG 253
EP P GG T ++ D D + L L + MLRV D +S++FY + G
Sbjct: 2 EPQPPSGGLTDEAALSCCSDADPSTKDFL--------LQETMLRVKDPKKSLDFYTRVLG 53
Query: 254 MELLRKRDNP 263
M L++K D P
Sbjct: 54 MTLIQKCDFP 63
>pdb|3OA4|A Chain A, Crystal Structure Of Hypothetical Protein Bh1468 From
Bacillus Halodurans C-125
Length = 161
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 54/136 (39%), Gaps = 4/136 (2%)
Query: 100 RMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNY 159
++ H+ V + + FY L +KLL D+P + AFL G + L+
Sbjct: 8 KLDHIGIAVTSIKDVLPFYVGSLKLKLLGMEDLPSQGVKIAFLEIGESKIELLEPLSEES 67
Query: 160 GVDKY--DIGTGFGHFGIAVDDVAKTVELIKAKGGK-VTREPGP-VKGGNTVIAFIEDPD 215
+ K+ G G H I V + + ++ +K G + + EP P +G
Sbjct: 68 PIAKFIQKRGEGIHHIAIGVKSIEERIQEVKENGVQMINDEPVPGARGAQVAFLHPRSAR 127
Query: 216 GYKFELLERGPTPEPL 231
G +E E+ E L
Sbjct: 128 GVLYEFCEKKEQAENL 143
>pdb|4G6X|A Chain A, Crystal Structure Of GlyoxalaseBLEOMYCIN RESISTANCE
PROTEIN FROM Catenulispora Acidiphila
Length = 155
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 58/136 (42%), Gaps = 9/136 (6%)
Query: 93 WVKKDKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIP--EEKYTNAFLGYGPEDSH 150
+ + + R+ V D + FYT LG L K D+P +++ P+ +
Sbjct: 19 YFQSNAXRIHLTNVFVDDQAKAESFYTGKLG--FLVKADVPVGADRWLTVVSPEAPDGTQ 76
Query: 151 FVIELTYNYGVDKYD---IGTGFGHFGIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTV 207
++E + + V + + G AVDD+A E + A G + T+E P G V
Sbjct: 77 LLLEPSSHAAVTPFKEALVADGIPAASFAVDDIAAEYERLSALGVRFTQE--PTDXGPVV 134
Query: 208 IAFIEDPDGYKFELLE 223
A ++D G +L +
Sbjct: 135 TAILDDTCGNLIQLXQ 150
>pdb|3RMU|A Chain A, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
pdb|3RMU|B Chain B, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
pdb|3RMU|C Chain C, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
pdb|3RMU|D Chain D, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
Length = 134
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 11/98 (11%)
Query: 100 RMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNY 159
R+ HV V DL++ FY LG ++ +PE + F+ G +EL +
Sbjct: 5 RLNHVAIAVPDLEKAAAFYKNILGAQVSEAVPLPEHGVSVVFVNLGNTK----MELLHPL 60
Query: 160 GVD-------KYDIGTGFGHFGIAVDDVAKTVELIKAK 190
G+D + + G H I VD++ V +K K
Sbjct: 61 GLDSPIAGFLQKNKAGGMHHICIEVDNINAAVMDLKKK 98
>pdb|2P25|A Chain A, The Crystal Structure Of The Glyoxalase Family Protein
From Enterococcus Faecalis
Length = 126
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 48/126 (38%), Gaps = 4/126 (3%)
Query: 99 RRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYN 158
+ + HV + T FY E LG ++LR+ PE+ L G ++ I +
Sbjct: 4 KEIHHVAINASNYQATKNFYVEKLGFEVLRENHRPEKNDIKLDLKLGSQELEIFISDQFP 63
Query: 159 YGVDKYDIGTGFGHFGIAVDDVAKTVELIKAKGGKVTREPGPVKG-GNTVIAFIEDPDGY 217
Y G H V+ + + + + +G + EP V F DPDG
Sbjct: 64 -ARPSYPEALGLRHLAFKVEHIEEVIAFLNEQG--IETEPLRVDDFTGKKXTFFFDPDGL 120
Query: 218 KFELLE 223
EL E
Sbjct: 121 PLELHE 126
>pdb|1JC5|A Chain A, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|B Chain B, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|C Chain C, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|D Chain D, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|E Chain E, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|F Chain F, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
Length = 148
Score = 35.4 bits (80), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 45/116 (38%), Gaps = 11/116 (9%)
Query: 103 HVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIEL------- 155
HV Y D D K+Y E G L + + PE+ + + + + ++
Sbjct: 12 HVAYACPDADEASKYYQETFGWHELHREENPEQGVVEIMMAPAAKLTEHMTQVQVMAPLN 71
Query: 156 ---TYNYGVDKYDIGTGFGHFGIAVDDVAKTVELIKAKGGKVT-REPGPVKGGNTV 207
T + K++ G H VDD+ ++ +G ++ EP GGN +
Sbjct: 72 DESTVAKWLAKHNGRAGLHHMAWRVDDIDAVSATLRERGVQLLYDEPKLGTGGNRI 127
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 240 DLDRSINFYEQAFGMELLRKRDNPEYKVL 268
D D + +Y++ FG L + +NPE V+
Sbjct: 19 DADEASKYYQETFGWHELHREENPEQGVV 47
>pdb|3L7T|A Chain A, Crystal Structure Of Smu.1112c
pdb|3L7T|B Chain B, Crystal Structure Of Smu.1112c
pdb|3L7T|C Chain C, Crystal Structure Of Smu.1112c
pdb|3L7T|D Chain D, Crystal Structure Of Smu.1112c
Length = 134
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 53/128 (41%), Gaps = 8/128 (6%)
Query: 103 HVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGP-EDSHFVIELT-YNYG 160
HV V D D++ +FY LG +++R+ P+ L G E F +LT NY
Sbjct: 8 HVALIVSDYDKSYEFYVNQLGFEVIRENHRPKRHDYKLDLKCGDIELEIFGNKLTDSNYC 67
Query: 161 VDKYDI-----GTGFGHFGIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPD 215
I G H V+DV + + + A G +V G +AF DPD
Sbjct: 68 APPERISWPREACGLRHLAFYVEDVEASRQELIALGIRVEEVRYDDYTGKK-MAFFFDPD 126
Query: 216 GYKFELLE 223
G EL E
Sbjct: 127 GLPLELHE 134
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 233 QVMLRVGDLDRSINFYEQAFGMELLRKRDNPE 264
V L V D D+S FY G E++R+ P+
Sbjct: 8 HVALIVSDYDKSYEFYVNQLGFEVIRENHRPK 39
>pdb|1JC4|A Chain A, Crystal Structure Of Se-Met Methylmalonyl-Coa Epimerase
pdb|1JC4|B Chain B, Crystal Structure Of Se-Met Methylmalonyl-Coa Epimerase
pdb|1JC4|C Chain C, Crystal Structure Of Se-Met Methylmalonyl-Coa Epimerase
pdb|1JC4|D Chain D, Crystal Structure Of Se-Met Methylmalonyl-Coa Epimerase
Length = 148
Score = 31.2 bits (69), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 42/116 (36%), Gaps = 11/116 (9%)
Query: 103 HVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVI--------- 153
HV Y D D K+Y E G L + + PE+ + +
Sbjct: 12 HVAYACPDADEASKYYQETFGWHELHREENPEQGVVEIXXAPAAKLTEHXTQVQVXAPLN 71
Query: 154 -ELTYNYGVDKYDIGTGFGHFGIAVDDVAKTVELIKAKGGKVT-REPGPVKGGNTV 207
E T + K++ G H VDD+ ++ +G ++ EP GGN +
Sbjct: 72 DESTVAKWLAKHNGRAGLHHXAWRVDDIDAVSATLRERGVQLLYDEPKLGTGGNRI 127
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 233 QVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKVL 268
V D D + +Y++ FG L + +NPE V+
Sbjct: 12 HVAYACPDADEASKYYQETFGWHELHREENPEQGVV 47
>pdb|3HNQ|A Chain A, Crystal Structure Of Virulence Protein Stm3117 From
Salmonella Typhimurium. Northeast Structural Genomics
Consortium Target Id Str274
pdb|3HNQ|B Chain B, Crystal Structure Of Virulence Protein Stm3117 From
Salmonella Typhimurium. Northeast Structural Genomics
Consortium Target Id Str274
pdb|3HNQ|C Chain C, Crystal Structure Of Virulence Protein Stm3117 From
Salmonella Typhimurium. Northeast Structural Genomics
Consortium Target Id Str274
pdb|3HNQ|D Chain D, Crystal Structure Of Virulence Protein Stm3117 From
Salmonella Typhimurium. Northeast Structural Genomics
Consortium Target Id Str274
Length = 144
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 92 EWVKKDKRRMLHVVYRVGDLDRTIKFYTECLGMK 125
E ++ R+ H+V V D+ TI+FY E LG
Sbjct: 15 ESIQXIIDRIDHLVLTVSDISTTIRFYEEVLGFS 48
>pdb|3HUH|A Chain A, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
pdb|3HUH|B Chain B, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
pdb|3HUH|C Chain C, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
pdb|3HUH|D Chain D, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
Length = 152
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 92 EWVKKDKRRMLHVVYRVGDLDRTIKFYTECLG 123
E ++ R+ H+V V D+ TI+FY E LG
Sbjct: 15 ESIQMIIDRIDHLVLTVSDISTTIRFYEEVLG 46
>pdb|1J2W|A Chain A, Tetrameric Structure Of Aldolase From Thermus Thermophilus
Hb8
pdb|1J2W|B Chain B, Tetrameric Structure Of Aldolase From Thermus Thermophilus
Hb8
pdb|1J2W|C Chain C, Tetrameric Structure Of Aldolase From Thermus Thermophilus
Hb8
pdb|1J2W|D Chain D, Tetrameric Structure Of Aldolase From Thermus Thermophilus
Hb8
pdb|1UB3|A Chain A, Crystal Structure Of Tetrameric Structure Of Aldolase From
Thermus Thermophilus Hb8
pdb|1UB3|B Chain B, Crystal Structure Of Tetrameric Structure Of Aldolase From
Thermus Thermophilus Hb8
pdb|1UB3|C Chain C, Crystal Structure Of Tetrameric Structure Of Aldolase From
Thermus Thermophilus Hb8
pdb|1UB3|D Chain D, Crystal Structure Of Tetrameric Structure Of Aldolase From
Thermus Thermophilus Hb8
Length = 220
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 144 YGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDVAKTVEL------IKAKGGKVTRE 197
+ PE+ + E G D TGFG G +++DVA V + +KA GG RE
Sbjct: 130 FSPEEIARLAEAAIRGGADFLKTSTGFGPRGASLEDVALLVRVAQGRAQVKAAGGIRDRE 189
>pdb|4IR0|A Chain A, Crystal Structure Of Metallothiol Transferase Fosb 2 From
Bacillus Anthracis Str. Ames
pdb|4IR0|B Chain B, Crystal Structure Of Metallothiol Transferase Fosb 2 From
Bacillus Anthracis Str. Ames
Length = 148
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 103 HVVYRVGDLDRTIKFYTECLGMKLLRK 129
H+ + V +L+++I+FY + L KLL K
Sbjct: 8 HICFSVSNLEKSIEFYQKILQAKLLVK 34
>pdb|2XFC|A Chain A, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
Into The Semliki Forest Virus Cryo-Em Map
pdb|2XFC|D Chain D, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
Into The Semliki Forest Virus Cryo-Em Map
pdb|2XFC|F Chain F, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
Into The Semliki Forest Virus Cryo-Em Map
pdb|2XFC|H Chain H, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
Into The Semliki Forest Virus Cryo-Em Map
Length = 439
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 21/125 (16%)
Query: 143 GYGPEDSHFVIELTYNYGVDKYDIGTGF-GHFGIAVDDVAKTVEL--IKAKGGKVTREPG 199
+ P D+ V+ Y +D G G G FG D ++T E + A V + P
Sbjct: 169 AWTPFDNKIVVYKGDVYNMDYPPFGAGRPGQFG---DIQSRTPESKDVYANTQLVLQRPA 225
Query: 200 PVKGGNTVIAFIEDPDGYKFELLERGPTPE------------PLCQVMLRVGDLDRSINF 247
G + + + P G+K+ L ERG + + P+ V VG++ SI+
Sbjct: 226 ---AGTVHVPYSQAPSGFKYWLKERGASLQHTAPFGCQIATNPVRAVNCAVGNMPISIDI 282
Query: 248 YEQAF 252
E AF
Sbjct: 283 PEAAF 287
>pdb|3N41|F Chain F, Crystal Structure Of The Mature Envelope Glycoprotein
Complex (Spontaneous Cleavage) Of Chikungunya Virus.
pdb|3N42|F Chain F, Crystal Structures Of The Mature Envelope Glycoprotein
Complex (Furin Cleavage) Of Chikungunya Virus.
pdb|3N43|F Chain F, Crystal Structures Of The Mature Envelope Glycoprotein
Complex (Trypsin Cleavage) Of Chikungunya Virus.
pdb|3N44|F Chain F, Crystal Structure Of The Mature Envelope Glycoprotein
Complex (Trypsin Cleavage; Osmium Soak) Of Chikungunya
Virus
Length = 473
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 51/125 (40%), Gaps = 21/125 (16%)
Query: 143 GYGPEDSHFVIELTYNYGVDKYDIGTGF-GHFGIAVDDVAKTVEL--IKAKGGKVTREPG 199
+ P D+ V+ Y +D G G G FG D ++T E + A V + P
Sbjct: 191 AWTPFDNKIVVYKGDVYNMDYPPFGAGRPGQFG---DIQSRTPESKDVYANTQLVLQRPA 247
Query: 200 PVKGGNTVIAFIEDPDGYKFELLERGPT------------PEPLCQVMLRVGDLDRSINF 247
G + + + P G+K+ L ERG + P+ V VG++ SI+
Sbjct: 248 ---AGTVHVPYSQAPSGFKYWLKERGASLQHTAPFGCQIATNPVRAVNCAVGNMPISIDI 304
Query: 248 YEQAF 252
E AF
Sbjct: 305 PEAAF 309
>pdb|2XFB|A Chain A, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
Into The Sindbis Virus Cryo-Em Map
pdb|2XFB|D Chain D, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
Into The Sindbis Virus Cryo-Em Map
pdb|2XFB|F Chain F, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
Into The Sindbis Virus Cryo-Em Map
pdb|2XFB|H Chain H, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
Into The Sindbis Virus Cryo-Em Map
Length = 391
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 51/125 (40%), Gaps = 21/125 (16%)
Query: 143 GYGPEDSHFVIELTYNYGVDKYDIGTGF-GHFGIAVDDVAKTVEL--IKAKGGKVTREPG 199
+ P D+ V+ Y +D G G G FG D ++T E + A V + P
Sbjct: 169 AWTPFDNKIVVYKGDVYNMDYPPFGAGRPGQFG---DIQSRTPESKDVYANTQLVLQRPA 225
Query: 200 PVKGGNTVIAFIEDPDGYKFELLERGPT------------PEPLCQVMLRVGDLDRSINF 247
G + + + P G+K+ L ERG + P+ V VG++ SI+
Sbjct: 226 ---AGTVHVPYSQAPSGFKYWLKERGASLQHTAPFGCQIATNPVRAVNCAVGNMPISIDI 282
Query: 248 YEQAF 252
E AF
Sbjct: 283 PEAAF 287
>pdb|3N40|F Chain F, Crystal Structure Of The Immature Envelope Glycoprotein
Complex Of Chikungunya Virus
Length = 393
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 51/125 (40%), Gaps = 21/125 (16%)
Query: 143 GYGPEDSHFVIELTYNYGVDKYDIGTGF-GHFGIAVDDVAKTVEL--IKAKGGKVTREPG 199
+ P D+ V+ Y +D G G G FG D ++T E + A V + P
Sbjct: 171 AWTPFDNKIVVYKGDVYNMDYPPFGAGRPGQFG---DIQSRTPESKDVYANTQLVLQRPA 227
Query: 200 PVKGGNTVIAFIEDPDGYKFELLERGPT------------PEPLCQVMLRVGDLDRSINF 247
G + + + P G+K+ L ERG + P+ V VG++ SI+
Sbjct: 228 ---AGTVHVPYSQAPSGFKYWLKERGASLQHTAPFGCQIATNPVRAVNCAVGNMPISIDI 284
Query: 248 YEQAF 252
E AF
Sbjct: 285 PEAAF 289
>pdb|3B59|A Chain A, Crystal Structure Of The Mn(ii)-bound Glyoxalase From
Novosphingobium Aromaticivorans
pdb|3B59|B Chain B, Crystal Structure Of The Mn(ii)-bound Glyoxalase From
Novosphingobium Aromaticivorans
pdb|3B59|C Chain C, Crystal Structure Of The Mn(ii)-bound Glyoxalase From
Novosphingobium Aromaticivorans
pdb|3B59|D Chain D, Crystal Structure Of The Mn(ii)-bound Glyoxalase From
Novosphingobium Aromaticivorans
pdb|3B59|E Chain E, Crystal Structure Of The Mn(ii)-bound Glyoxalase From
Novosphingobium Aromaticivorans
pdb|3B59|F Chain F, Crystal Structure Of The Mn(ii)-bound Glyoxalase From
Novosphingobium Aromaticivorans
Length = 310
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 48/127 (37%), Gaps = 24/127 (18%)
Query: 100 RMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNY 159
++ H+V + +KF+T+ LG K+ + +LG F L N
Sbjct: 141 KISHIVLHSPNHQDXVKFFTDVLGFKV------------SDWLG------DFXCFLRCNS 182
Query: 160 GVDKYDIGTG---FGHFG---IAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIED 213
+ I G H ++VDD + +K KG + PG GN ++
Sbjct: 183 AHHRIAILPGPPCLNHVAYDXLSVDDXXRGAHRLKVKGIDIGWGPGRHTAGNNTFSYFVT 242
Query: 214 PDGYKFE 220
P G+ E
Sbjct: 243 PGGFVTE 249
>pdb|2JGV|A Chain A, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase In Complex With Adp
pdb|2JGV|B Chain B, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase In Complex With Adp
pdb|2JGV|C Chain C, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase In Complex With Adp
pdb|2JGV|D Chain D, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase In Complex With Adp
pdb|2Q5R|A Chain A, Structure Of Apo Staphylococcus Aureus
D-Tagatose-6-Phosphate Kinase
pdb|2Q5R|B Chain B, Structure Of Apo Staphylococcus Aureus
D-Tagatose-6-Phosphate Kinase
pdb|2Q5R|C Chain C, Structure Of Apo Staphylococcus Aureus
D-Tagatose-6-Phosphate Kinase
pdb|2Q5R|D Chain D, Structure Of Apo Staphylococcus Aureus
D-Tagatose-6-Phosphate Kinase
Length = 330
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 8/57 (14%)
Query: 143 GYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDVAKTVELIKAKGGK---VTR 196
G P SH ++ LT N VD + + +DDV + E+ K GGK VTR
Sbjct: 13 GLVPRGSHXILTLTLNPSVD-----ISYPLTALKLDDVNRVQEVSKTAGGKGLNVTR 64
>pdb|2JG1|A Chain A, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase With Cofactor And Substrate
pdb|2JG1|B Chain B, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase With Cofactor And Substrate
pdb|2JG1|C Chain C, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase With Cofactor And Substrate
pdb|2JG1|D Chain D, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase With Cofactor And Substrate
Length = 330
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 8/57 (14%)
Query: 143 GYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDVAKTVELIKAKGGK---VTR 196
G P SH ++ LT N VD + + +DDV + E+ K GGK VTR
Sbjct: 13 GLVPRGSHXILTLTLNPSVD-----ISYPLTALKLDDVNRVQEVSKTAGGKGLNVTR 64
>pdb|3PRX|B Chain B, Structure Of Complement C5 In Complex With Cvf And Ssl7
pdb|3PRX|D Chain D, Structure Of Complement C5 In Complex With Cvf And Ssl7
pdb|3PVM|B Chain B, Structure Of Complement C5 In Complex With Cvf
pdb|3PVM|D Chain D, Structure Of Complement C5 In Complex With Cvf
Length = 1642
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 133 PEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDVAKTV 184
P EK+ F G E+ H I Y YG + G F FG+ +DD K++
Sbjct: 230 PSEKF---FYIDGNENFHVSITARYLYGEEVE--GVAFVLFGVKIDDAKKSI 276
>pdb|2HJ0|A Chain A, Crystal Structure Of The Putative Alfa Subunit Of Citrate
Lyase In Complex With Citrate From Streptococcus Mutans,
Northeast Structural Genomics Target Smr12 (Casp
Target).
pdb|2HJ0|B Chain B, Crystal Structure Of The Putative Alfa Subunit Of Citrate
Lyase In Complex With Citrate From Streptococcus Mutans,
Northeast Structural Genomics Target Smr12 (Casp Target)
Length = 519
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 183 TVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 222
T+E +K K + P P++ G+ ++A IE DG +++
Sbjct: 469 TIEELKEKAYAIVGNPQPIQYGDKIVALIEYRDGSLIDVV 508
>pdb|2CRM|A Chain A, Solution Structure Of The Forth Fniii Domain Of Human
Length = 120
Score = 27.3 bits (59), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 193 KVTREPGPVKGGNT----VIAFIEDPDGYKFELLERGPTPEPLC 232
K+T +P GG T V+ E +G K+E++ G T E LC
Sbjct: 36 KITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIYSGATREHLC 79
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.141 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,332,845
Number of Sequences: 62578
Number of extensions: 312493
Number of successful extensions: 750
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 703
Number of HSP's gapped (non-prelim): 53
length of query: 268
length of database: 14,973,337
effective HSP length: 97
effective length of query: 171
effective length of database: 8,903,271
effective search space: 1522459341
effective search space used: 1522459341
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)