Query 024414
Match_columns 268
No_of_seqs 178 out of 1208
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 04:25:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024414.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024414hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02300 lactoylglutathione ly 100.0 1.5E-29 3.2E-34 226.5 22.8 186 81-266 5-190 (286)
2 KOG2943 Predicted glyoxalase [ 99.9 3E-25 6.6E-30 186.8 13.8 162 89-259 6-178 (299)
3 TIGR03211 catechol_2_3 catecho 99.9 1.2E-20 2.7E-25 169.7 20.0 153 98-263 2-178 (303)
4 TIGR02295 HpaD 3,4-dihydroxyph 99.9 2.3E-20 4.9E-25 167.2 20.3 151 97-263 1-169 (294)
5 TIGR00068 glyox_I lactoylgluta 99.9 2.1E-20 4.6E-25 151.5 17.8 138 95-232 12-149 (150)
6 PLN02367 lactoylglutathione ly 99.9 3.6E-20 7.8E-25 159.2 19.6 129 96-226 71-224 (233)
7 TIGR03213 23dbph12diox 2,3-dih 99.9 3.4E-20 7.3E-25 165.8 19.1 150 98-261 1-173 (286)
8 PRK10291 glyoxalase I; Provisi 99.8 8.8E-20 1.9E-24 143.9 16.6 126 106-231 2-127 (129)
9 COG2514 Predicted ring-cleavag 99.8 4.3E-19 9.4E-24 153.2 17.8 158 96-267 6-203 (265)
10 PLN03042 Lactoylglutathione ly 99.8 1.6E-18 3.5E-23 145.5 17.9 129 96-226 23-176 (185)
11 cd08353 Glo_EDI_BRP_like_7 Thi 99.8 2.2E-18 4.7E-23 137.8 16.7 123 98-224 1-141 (142)
12 cd07233 Glyoxalase_I Glyoxalas 99.8 3.5E-18 7.6E-23 132.1 16.5 120 101-222 1-121 (121)
13 cd08342 HPPD_N_like N-terminal 99.8 4E-18 8.7E-23 135.9 17.0 123 101-230 1-129 (136)
14 PRK11478 putative lyase; Provi 99.8 3.6E-18 7.8E-23 133.9 16.0 123 98-224 4-129 (129)
15 cd08358 Glo_EDI_BRP_like_21 Th 99.8 2E-17 4.4E-22 130.7 16.6 115 99-223 1-126 (127)
16 cd08352 Glo_EDI_BRP_like_1 Thi 99.8 1.6E-17 3.4E-22 128.6 15.7 121 99-223 2-125 (125)
17 cd07241 Glo_EDI_BRP_like_3 Thi 99.8 1.3E-17 2.8E-22 129.4 14.8 119 100-222 1-125 (125)
18 TIGR03645 glyox_marine lactoyl 99.8 2E-17 4.3E-22 136.2 16.4 127 98-227 2-154 (162)
19 cd07265 2_3_CTD_N N-terminal d 99.8 3.3E-17 7.2E-22 127.6 15.6 116 98-225 2-120 (122)
20 cd07243 2_3_CTD_C C-terminal d 99.8 5.2E-17 1.1E-21 130.9 16.9 118 98-224 4-125 (143)
21 cd07257 THT_oxygenase_C The C- 99.8 1.9E-17 4.1E-22 135.0 13.9 122 100-225 1-126 (153)
22 cd08360 MhqB_like_C C-terminal 99.8 7.6E-17 1.6E-21 128.1 16.8 119 99-227 2-123 (134)
23 PRK04101 fosfomycin resistance 99.8 5.5E-17 1.2E-21 129.8 16.0 118 97-225 1-120 (139)
24 TIGR03081 metmalonyl_epim meth 99.7 5.4E-17 1.2E-21 126.7 13.3 119 100-223 1-128 (128)
25 cd07237 BphC1-RGP6_C_like C-te 99.7 1.2E-16 2.6E-21 130.4 15.6 123 97-227 6-134 (154)
26 PF00903 Glyoxalase: Glyoxalas 99.7 3.3E-17 7.1E-22 126.9 10.5 120 100-221 1-128 (128)
27 cd08351 ChaP_like ChaP, an enz 99.7 2.4E-16 5.2E-21 123.2 15.3 113 97-224 1-121 (123)
28 cd07263 Glo_EDI_BRP_like_16 Th 99.7 2.2E-16 4.8E-21 120.9 14.6 117 103-223 1-119 (119)
29 cd09014 BphC-JF8_C_like C-term 99.7 3.1E-16 6.8E-21 129.5 16.4 122 98-225 4-128 (166)
30 cd08343 ED_TypeI_classII_C C-t 99.7 3.9E-16 8.5E-21 123.4 16.1 117 102-227 1-120 (131)
31 cd07247 SgaA_N_like N-terminal 99.7 3.9E-16 8.4E-21 119.7 15.6 114 101-223 1-114 (114)
32 cd07266 HPCD_N_class_II N-term 99.7 2.4E-16 5.3E-21 122.2 14.1 115 97-224 1-118 (121)
33 cd07253 Glo_EDI_BRP_like_2 Thi 99.7 4.3E-16 9.4E-21 120.4 15.3 118 98-223 1-124 (125)
34 cd08364 FosX FosX, a fosfomyci 99.7 4.8E-16 1E-20 123.2 15.7 120 97-225 1-123 (131)
35 cd08361 PpCmtC_N N-terminal do 99.7 3.5E-16 7.6E-21 122.7 14.0 114 97-226 3-121 (124)
36 cd07256 HPCD_C_class_II C-term 99.7 8.3E-16 1.8E-20 126.3 16.6 118 99-225 2-124 (161)
37 cd08347 PcpA_C_like C-terminal 99.7 6.1E-16 1.3E-20 126.7 15.7 118 100-226 1-122 (157)
38 cd07255 Glo_EDI_BRP_like_12 Th 99.7 1E-15 2.2E-20 119.2 16.2 118 99-227 1-122 (125)
39 cd09011 Glo_EDI_BRP_like_23 Th 99.7 4.1E-16 8.9E-21 121.1 13.7 113 100-224 2-119 (120)
40 cd08363 FosB FosB, a fosfomyci 99.7 3.8E-16 8.3E-21 123.8 13.6 115 101-226 1-117 (131)
41 cd09013 BphC-JF8_N_like N-term 99.7 8.1E-16 1.8E-20 119.6 15.2 114 97-225 3-119 (121)
42 cd08346 PcpA_N_like N-terminal 99.7 6.7E-16 1.5E-20 119.7 14.5 120 100-222 1-126 (126)
43 cd07245 Glo_EDI_BRP_like_9 Thi 99.7 3.5E-16 7.7E-21 118.3 12.6 113 101-221 1-114 (114)
44 cd07242 Glo_EDI_BRP_like_6 Thi 99.7 1.3E-15 2.8E-20 119.2 16.1 117 100-224 1-128 (128)
45 PLN02300 lactoylglutathione ly 99.7 9.6E-16 2.1E-20 137.2 17.1 149 58-226 132-280 (286)
46 cd07249 MMCE Methylmalonyl-CoA 99.7 6.5E-16 1.4E-20 120.2 14.0 119 101-223 1-128 (128)
47 cd07264 Glo_EDI_BRP_like_15 Th 99.7 8.8E-16 1.9E-20 119.4 14.6 117 101-224 1-125 (125)
48 cd07239 BphC5-RK37_C_like C-te 99.7 1.3E-15 2.7E-20 123.0 15.8 114 99-226 3-119 (144)
49 cd08355 Glo_EDI_BRP_like_14 Th 99.7 1.5E-15 3.3E-20 118.0 15.2 116 105-223 4-121 (122)
50 cd08359 Glo_EDI_BRP_like_22 Th 99.7 1.2E-15 2.6E-20 117.9 14.4 111 103-223 4-119 (119)
51 cd07240 ED_TypeI_classII_N N-t 99.7 1.8E-15 4E-20 116.1 15.3 112 99-225 1-115 (117)
52 cd07252 BphC1-RGP6_N_like N-te 99.7 1.2E-15 2.7E-20 118.7 14.3 112 100-225 2-118 (120)
53 PRK06724 hypothetical protein; 99.7 1.8E-15 4E-20 119.8 14.7 114 96-225 3-124 (128)
54 TIGR01263 4HPPD 4-hydroxypheny 99.7 6.8E-15 1.5E-19 135.6 20.6 157 100-261 2-191 (353)
55 cd08348 BphC2-C3-RGP6_C_like T 99.7 4.6E-15 1E-19 117.2 16.8 121 100-228 1-124 (134)
56 cd07258 PpCmtC_C C-terminal do 99.7 2.1E-15 4.5E-20 121.4 14.9 113 102-226 1-116 (141)
57 cd07246 Glo_EDI_BRP_like_8 Thi 99.7 6E-15 1.3E-19 113.9 16.3 116 104-224 5-122 (122)
58 cd08362 BphC5-RrK37_N_like N-t 99.7 4.7E-15 1E-19 114.6 14.7 114 98-225 1-118 (120)
59 cd07267 THT_Oxygenase_N N-term 99.7 6.2E-15 1.3E-19 113.5 14.7 110 98-224 1-110 (113)
60 TIGR03211 catechol_2_3 catecho 99.6 4.6E-15 1E-19 133.5 16.0 156 57-224 101-265 (303)
61 PF12681 Glyoxalase_2: Glyoxal 99.6 5.1E-15 1.1E-19 112.2 13.7 108 106-222 1-108 (108)
62 cd07238 Glo_EDI_BRP_like_5 Thi 99.6 1.1E-14 2.3E-19 111.5 15.0 109 104-225 4-112 (112)
63 cd07262 Glo_EDI_BRP_like_19 Th 99.6 1.1E-14 2.4E-19 113.2 14.5 114 101-222 1-122 (123)
64 cd07244 FosA FosA, a Fosfomyci 99.6 8E-15 1.7E-19 114.2 13.6 109 100-225 1-111 (121)
65 cd08354 Glo_EDI_BRP_like_13 Th 99.6 1.2E-14 2.6E-19 112.4 14.3 114 101-224 1-122 (122)
66 TIGR03213 23dbph12diox 2,3-dih 99.6 1.2E-14 2.5E-19 130.0 16.1 158 56-224 100-263 (286)
67 cd08345 Fosfomycin_RP Fosfomyc 99.6 1.1E-14 2.3E-19 111.4 13.0 109 103-224 1-111 (113)
68 cd07254 Glo_EDI_BRP_like_20 Th 99.6 2.2E-14 4.8E-19 111.1 14.6 112 102-225 3-118 (120)
69 cd08357 Glo_EDI_BRP_like_18 Th 99.6 1.4E-14 2.9E-19 112.5 13.0 113 103-223 2-124 (125)
70 cd06587 Glo_EDI_BRP_like This 99.6 2.9E-14 6.2E-19 106.5 13.9 112 103-221 1-112 (112)
71 cd08349 BLMA_like Bleomycin bi 99.6 4.3E-14 9.4E-19 107.4 15.0 109 105-223 3-112 (112)
72 cd07235 MRD Mitomycin C resist 99.6 2.3E-14 4.9E-19 111.3 13.6 113 101-222 1-121 (122)
73 TIGR02295 HpaD 3,4-dihydroxyph 99.6 3.1E-14 6.6E-19 127.5 16.4 158 54-225 95-257 (294)
74 cd07261 Glo_EDI_BRP_like_11 Th 99.6 3.3E-14 7.3E-19 109.0 13.7 108 104-222 2-113 (114)
75 cd08344 MhqB_like_N N-terminal 99.6 5.5E-14 1.2E-18 107.9 14.0 108 99-225 1-110 (112)
76 cd09012 Glo_EDI_BRP_like_24 Th 99.6 4.2E-14 9.1E-19 110.4 13.5 113 101-223 1-123 (124)
77 COG3324 Predicted enzyme relat 99.6 5.4E-14 1.2E-18 110.1 13.2 121 86-225 5-126 (127)
78 cd08350 BLMT_like BLMT, a bleo 99.6 1E-13 2.2E-18 107.7 14.2 107 104-224 6-119 (120)
79 PF13669 Glyoxalase_4: Glyoxal 99.6 4.3E-14 9.2E-19 108.5 11.3 95 102-198 1-97 (109)
80 cd08356 Glo_EDI_BRP_like_17 Th 99.5 5.5E-13 1.2E-17 102.9 13.0 103 105-223 6-113 (113)
81 cd07251 Glo_EDI_BRP_like_10 Th 99.5 1.3E-12 2.8E-17 100.7 13.5 110 104-223 2-120 (121)
82 PLN02875 4-hydroxyphenylpyruva 99.5 5.9E-12 1.3E-16 116.7 19.1 160 101-264 1-214 (398)
83 KOG2944 Glyoxalase [Carbohydra 99.5 1.6E-12 3.5E-17 103.7 12.7 119 99-224 41-168 (170)
84 cd07250 HPPD_C_like C-terminal 99.3 9.9E-12 2.1E-16 105.0 11.6 101 99-201 2-115 (191)
85 KOG0638 4-hydroxyphenylpyruvat 99.3 5.2E-12 1.1E-16 111.1 7.9 165 98-264 15-214 (381)
86 COG3565 Predicted dioxygenase 99.2 1.4E-10 3.1E-15 87.8 10.8 119 99-225 3-130 (138)
87 cd06588 PhnB_like Escherichia 99.1 2.6E-09 5.6E-14 84.2 15.1 111 105-222 4-128 (128)
88 TIGR01263 4HPPD 4-hydroxypheny 99.1 3.4E-10 7.3E-15 104.4 10.3 127 98-226 156-312 (353)
89 COG2764 PhnB Uncharacterized p 99.1 6.8E-09 1.5E-13 82.6 15.5 117 105-226 5-133 (136)
90 COG0346 GloA Lactoylglutathion 99.1 4.7E-10 1E-14 85.9 8.0 122 99-223 1-138 (138)
91 COG3607 Predicted lactoylgluta 99.0 2.5E-09 5.5E-14 82.3 10.2 118 100-226 3-129 (133)
92 KOG2943 Predicted glyoxalase [ 99.0 2.3E-09 5E-14 91.2 9.2 120 100-225 149-271 (299)
93 PF13468 Glyoxalase_3: Glyoxal 99.0 1.2E-08 2.6E-13 84.8 13.2 147 101-252 1-175 (175)
94 PLN02875 4-hydroxyphenylpyruva 98.9 5.2E-09 1.1E-13 97.2 10.3 127 98-226 178-342 (398)
95 PRK01037 trmD tRNA (guanine-N( 98.8 6.7E-08 1.5E-12 87.4 10.8 106 99-224 246-354 (357)
96 COG2514 Predicted ring-cleavag 98.7 1.3E-07 2.8E-12 82.3 9.5 137 58-222 110-264 (265)
97 COG3185 4-hydroxyphenylpyruvat 98.6 6.4E-07 1.4E-11 80.6 12.5 159 98-264 20-203 (363)
98 PF14506 CppA_N: CppA N-termin 98.6 4.2E-06 9.2E-11 64.3 14.2 114 102-225 2-115 (125)
99 PRK10148 hypothetical protein; 98.5 1.4E-05 3E-10 64.7 16.4 116 105-228 6-145 (147)
100 COG3185 4-hydroxyphenylpyruvat 98.5 3.6E-07 7.7E-12 82.2 7.0 102 98-201 165-277 (363)
101 PF13669 Glyoxalase_4: Glyoxal 98.2 1.1E-05 2.3E-10 61.6 8.7 88 171-260 1-97 (109)
102 PF14696 Glyoxalase_5: Hydroxy 98.2 2.5E-05 5.4E-10 62.5 10.5 120 98-228 7-130 (139)
103 KOG0638 4-hydroxyphenylpyruvat 97.7 1.9E-05 4.1E-10 70.2 1.9 145 98-244 176-366 (381)
104 PLN02367 lactoylglutathione ly 97.6 8.2E-05 1.8E-09 64.5 4.6 37 230-266 75-111 (233)
105 cd08353 Glo_EDI_BRP_like_7 Thi 97.6 0.0017 3.7E-08 51.2 11.8 89 169-258 3-114 (142)
106 TIGR00068 glyox_I lactoylgluta 97.4 0.00022 4.8E-09 57.3 4.7 40 226-265 13-52 (150)
107 PLN03042 Lactoylglutathione ly 97.4 0.0002 4.3E-09 60.2 4.4 46 220-265 14-62 (185)
108 PF06983 3-dmu-9_3-mt: 3-demet 97.3 0.014 3E-07 45.2 13.5 96 109-222 11-116 (116)
109 TIGR03645 glyox_marine lactoyl 97.3 0.0055 1.2E-07 50.1 11.7 88 168-256 3-118 (162)
110 cd08352 Glo_EDI_BRP_like_1 Thi 97.3 0.0071 1.5E-07 45.8 11.7 88 169-258 3-99 (125)
111 cd07249 MMCE Methylmalonyl-CoA 97.3 0.006 1.3E-07 46.6 11.1 88 170-259 1-100 (128)
112 cd07252 BphC1-RGP6_N_like N-te 97.1 0.00049 1.1E-08 52.9 3.6 31 229-259 1-31 (120)
113 cd08346 PcpA_N_like N-terminal 97.1 0.011 2.4E-07 44.9 10.9 88 169-256 1-101 (126)
114 PRK11478 putative lyase; Provi 97.0 0.00074 1.6E-08 52.2 3.8 30 229-258 5-34 (129)
115 cd07245 Glo_EDI_BRP_like_9 Thi 97.0 0.00057 1.2E-08 50.7 3.0 33 231-263 1-33 (114)
116 cd07265 2_3_CTD_N N-terminal d 97.0 0.00083 1.8E-08 51.6 3.7 32 229-260 3-34 (122)
117 cd09013 BphC-JF8_N_like N-term 96.9 0.001 2.2E-08 51.0 4.0 33 228-260 4-36 (121)
118 COG3324 Predicted enzyme relat 96.9 0.0013 2.8E-08 51.8 3.9 34 227-260 6-39 (127)
119 cd07250 HPPD_C_like C-terminal 96.8 0.016 3.5E-07 48.8 10.8 89 169-258 3-110 (191)
120 cd08361 PpCmtC_N N-terminal do 96.8 0.0011 2.3E-08 51.5 3.3 31 229-259 5-35 (124)
121 cd07233 Glyoxalase_I Glyoxalas 96.8 0.031 6.8E-07 42.2 11.5 88 170-259 1-98 (121)
122 cd08362 BphC5-RrK37_N_like N-t 96.8 0.0017 3.6E-08 49.5 4.0 31 229-259 2-32 (120)
123 cd07240 ED_TypeI_classII_N N-t 96.7 0.002 4.3E-08 48.6 4.2 31 230-260 2-32 (117)
124 cd08347 PcpA_C_like C-terminal 96.7 0.027 5.9E-07 45.8 10.7 82 169-256 1-93 (157)
125 cd08360 MhqB_like_C C-terminal 96.6 0.034 7.3E-07 43.5 10.8 84 168-257 2-91 (134)
126 cd07241 Glo_EDI_BRP_like_3 Thi 96.6 0.072 1.6E-06 40.3 12.1 88 170-258 2-100 (125)
127 cd07266 HPCD_N_class_II N-term 96.6 0.0025 5.4E-08 48.7 3.7 31 229-259 3-33 (121)
128 cd06587 Glo_EDI_BRP_like This 96.6 0.041 8.9E-07 39.9 10.2 83 172-259 1-89 (112)
129 cd08351 ChaP_like ChaP, an enz 96.6 0.0027 5.9E-08 48.9 3.8 29 230-258 4-32 (123)
130 cd07267 THT_Oxygenase_N N-term 96.5 0.0034 7.3E-08 47.7 3.9 30 229-259 2-31 (113)
131 cd08342 HPPD_N_like N-terminal 96.5 0.055 1.2E-06 42.5 11.0 84 170-258 1-96 (136)
132 cd07263 Glo_EDI_BRP_like_16 Th 96.5 0.06 1.3E-06 40.1 10.8 86 172-260 1-96 (119)
133 cd07237 BphC1-RGP6_C_like C-te 96.4 0.055 1.2E-06 43.7 10.9 90 168-258 8-103 (154)
134 cd08344 MhqB_like_N N-terminal 96.3 0.0054 1.2E-07 46.4 3.9 30 230-260 2-31 (112)
135 PF15067 FAM124: FAM124 family 96.2 0.046 9.9E-07 47.1 9.5 119 86-221 111-235 (236)
136 cd08348 BphC2-C3-RGP6_C_like T 96.2 0.12 2.5E-06 40.1 11.3 84 170-258 2-95 (134)
137 PRK06724 hypothetical protein; 96.1 0.0076 1.6E-07 47.4 4.2 29 229-257 6-37 (128)
138 cd07242 Glo_EDI_BRP_like_6 Thi 96.1 0.082 1.8E-06 40.5 10.0 84 169-259 1-99 (128)
139 cd09014 BphC-JF8_C_like C-term 96.1 0.093 2E-06 42.9 10.7 87 169-256 6-97 (166)
140 cd07257 THT_oxygenase_C The C- 96.0 0.029 6.4E-07 45.2 7.3 87 170-258 2-97 (153)
141 cd09011 Glo_EDI_BRP_like_23 Th 96.0 0.0086 1.9E-07 45.8 3.9 29 230-258 2-30 (120)
142 cd07247 SgaA_N_like N-terminal 95.9 0.23 4.9E-06 37.1 11.3 84 171-259 2-89 (114)
143 cd07255 Glo_EDI_BRP_like_12 Th 95.7 0.21 4.6E-06 37.9 10.6 81 169-256 2-92 (125)
144 cd07262 Glo_EDI_BRP_like_19 Th 95.6 0.17 3.6E-06 38.5 9.9 76 170-251 1-85 (123)
145 cd08364 FosX FosX, a fosfomyci 95.6 0.28 6E-06 38.2 11.2 87 168-257 3-94 (131)
146 PF00903 Glyoxalase: Glyoxalas 95.6 0.34 7.3E-06 36.4 11.4 89 169-258 1-103 (128)
147 cd07243 2_3_CTD_C C-terminal d 95.6 0.35 7.5E-06 38.5 11.8 87 169-258 6-97 (143)
148 TIGR03081 metmalonyl_epim meth 95.5 0.22 4.8E-06 37.8 10.1 86 170-258 2-99 (128)
149 PF13468 Glyoxalase_3: Glyoxal 95.5 0.046 1E-06 45.1 6.5 83 170-255 1-101 (175)
150 cd08343 ED_TypeI_classII_C C-t 95.4 0.27 5.9E-06 38.0 10.6 85 171-258 1-89 (131)
151 cd07256 HPCD_C_class_II C-term 95.1 0.37 7.9E-06 39.1 10.8 85 168-255 2-90 (161)
152 cd07253 Glo_EDI_BRP_like_2 Thi 94.9 0.43 9.3E-06 35.7 10.1 82 169-257 3-94 (125)
153 cd07239 BphC5-RK37_C_like C-te 94.7 0.55 1.2E-05 37.4 10.5 81 168-256 3-87 (144)
154 PF14507 CppA_C: CppA C-termin 94.2 0.15 3.3E-06 38.4 5.8 90 100-221 5-100 (101)
155 cd07258 PpCmtC_C C-terminal do 93.9 0.72 1.6E-05 36.7 9.6 80 172-257 2-85 (141)
156 COG3865 Uncharacterized protei 93.6 3.1 6.8E-05 33.3 12.4 98 109-222 14-122 (151)
157 PRK04101 fosfomycin resistance 93.4 1.5 3.2E-05 34.4 10.6 80 169-257 4-91 (139)
158 PRK10291 glyoxalase I; Provisi 93.3 1.4 2.9E-05 33.9 10.1 82 174-257 1-91 (129)
159 cd07235 MRD Mitomycin C resist 93.0 1.4 3E-05 33.2 9.6 83 170-257 1-95 (122)
160 KOG2944 Glyoxalase [Carbohydra 93.0 0.44 9.4E-06 38.8 6.8 44 98-144 113-157 (170)
161 cd07254 Glo_EDI_BRP_like_20 Th 92.6 2.3 5E-05 31.9 10.4 82 171-258 3-88 (120)
162 cd07238 Glo_EDI_BRP_like_5 Thi 92.4 3.2 6.9E-05 30.7 10.8 78 173-258 4-84 (112)
163 cd08356 Glo_EDI_BRP_like_17 Th 92.0 0.13 2.9E-06 39.0 2.6 26 234-260 5-30 (113)
164 cd09012 Glo_EDI_BRP_like_24 Th 91.7 2.5 5.4E-05 32.0 9.7 81 171-256 2-96 (124)
165 cd08363 FosB FosB, a fosfomyci 91.3 2 4.3E-05 33.3 8.7 79 170-257 1-87 (131)
166 cd08354 Glo_EDI_BRP_like_13 Th 90.8 4.7 0.0001 30.0 10.3 80 171-257 2-95 (122)
167 cd08358 Glo_EDI_BRP_like_21 Th 89.6 8.5 0.00019 30.1 11.9 87 170-258 3-106 (127)
168 cd08345 Fosfomycin_RP Fosfomyc 88.9 3.8 8.1E-05 30.2 8.3 77 172-257 1-83 (113)
169 cd07244 FosA FosA, a Fosfomyci 88.8 6.8 0.00015 29.5 9.8 80 169-257 1-85 (121)
170 PRK11700 hypothetical protein; 87.1 9.7 0.00021 31.9 10.1 79 98-179 37-120 (187)
171 cd07261 Glo_EDI_BRP_like_11 Th 85.7 12 0.00026 27.5 9.9 79 173-258 2-89 (114)
172 PF06185 YecM: YecM protein; 85.6 7.8 0.00017 32.5 8.8 89 97-188 31-125 (185)
173 cd07268 Glo_EDI_BRP_like_4 Thi 85.4 12 0.00026 30.2 9.5 76 101-179 2-82 (149)
174 cd07251 Glo_EDI_BRP_like_10 Th 85.0 13 0.00028 27.4 9.5 78 173-258 2-94 (121)
175 cd08349 BLMA_like Bleomycin bi 83.4 15 0.00032 26.6 9.2 75 174-255 3-82 (112)
176 cd07246 Glo_EDI_BRP_like_8 Thi 83.1 16 0.00035 26.9 11.7 83 173-258 5-95 (122)
177 PRK01037 trmD tRNA (guanine-N( 83.0 1.3 2.8E-05 40.8 3.4 28 229-256 246-273 (357)
178 cd08357 Glo_EDI_BRP_like_18 Th 81.2 19 0.00042 26.6 9.1 78 172-258 2-94 (125)
179 cd08350 BLMT_like BLMT, a bleo 77.9 26 0.00057 26.1 9.3 76 172-255 5-82 (120)
180 cd08359 Glo_EDI_BRP_like_22 Th 77.5 26 0.00056 25.8 11.1 79 172-258 4-93 (119)
181 PF13670 PepSY_2: Peptidase pr 74.2 12 0.00026 26.7 5.7 46 179-226 30-75 (83)
182 PF12681 Glyoxalase_2: Glyoxal 71.1 29 0.00063 24.9 7.4 46 97-143 53-98 (108)
183 PF14507 CppA_C: CppA C-termin 63.3 2.9 6.3E-05 31.5 0.5 22 231-253 6-27 (101)
184 PF06983 3-dmu-9_3-mt: 3-demet 58.2 10 0.00022 29.1 2.8 26 239-264 11-37 (116)
185 cd07264 Glo_EDI_BRP_like_15 Th 54.9 83 0.0018 23.1 10.5 80 171-257 2-97 (125)
186 cd04882 ACT_Bt0572_2 C-termina 53.4 32 0.00069 22.4 4.4 26 169-194 39-64 (65)
187 COG4747 ACT domain-containing 53.4 25 0.00054 27.4 4.1 83 169-256 41-133 (142)
188 COG0346 GloA Lactoylglutathion 46.4 33 0.00072 24.8 4.0 29 169-197 2-31 (138)
189 cd04883 ACT_AcuB C-terminal AC 45.3 57 0.0012 21.8 4.7 27 171-197 43-71 (72)
190 cd04895 ACT_ACR_1 ACT domain-c 44.7 83 0.0018 22.0 5.4 47 173-219 4-55 (72)
191 KOG4657 Uncharacterized conser 43.3 73 0.0016 27.6 5.8 35 109-146 145-179 (246)
192 PF07063 DUF1338: Domain of un 41.1 55 0.0012 29.7 5.1 45 102-147 36-85 (302)
193 cd04897 ACT_ACR_3 ACT domain-c 38.1 1.2E+02 0.0026 21.4 5.4 47 173-219 4-55 (75)
194 PF14696 Glyoxalase_5: Hydroxy 37.5 41 0.00089 26.9 3.3 85 168-259 8-101 (139)
195 PF09066 B2-adapt-app_C: Beta2 36.3 1.7E+02 0.0037 21.9 6.5 71 177-249 35-107 (114)
196 TIGR00318 cyaB adenylyl cyclas 34.1 2.6E+02 0.0056 22.8 10.3 77 173-256 6-101 (174)
197 cd04906 ACT_ThrD-I_1 First of 34.1 85 0.0018 22.3 4.3 28 169-196 40-71 (85)
198 PHA00404 hypothetical protein 32.4 27 0.00058 21.4 1.1 17 7-24 1-17 (42)
199 COG0605 SodA Superoxide dismut 27.3 84 0.0018 26.8 3.7 71 179-259 110-196 (204)
200 cd08355 Glo_EDI_BRP_like_14 Th 26.9 2.5E+02 0.0055 20.4 11.2 82 173-257 3-94 (122)
201 COG3102 Uncharacterized protei 26.8 3.7E+02 0.0081 22.3 7.3 84 98-187 37-129 (185)
202 COG1225 Bcp Peroxiredoxin [Pos 25.8 3.4E+02 0.0073 22.1 6.8 54 169-222 64-136 (157)
203 PF02208 Sorb: Sorbin homologo 24.6 18 0.0004 23.0 -0.6 21 102-122 13-33 (47)
204 cd04885 ACT_ThrD-I Tandem C-te 24.5 1.5E+02 0.0032 19.9 3.9 27 168-194 37-66 (68)
205 cd04908 ACT_Bt0572_1 N-termina 23.9 1.4E+02 0.003 19.8 3.7 23 172-194 42-64 (66)
206 COG1437 CyaB Adenylate cyclase 23.5 4.4E+02 0.0095 22.0 9.4 84 173-257 6-103 (178)
207 PF15598 Imm37: Immunity prote 22.4 4.1E+02 0.0088 21.2 7.3 79 182-264 3-86 (159)
208 PF13176 TPR_7: Tetratricopept 21.8 70 0.0015 18.6 1.6 18 237-254 11-28 (36)
209 PRK06704 RNA polymerase factor 20.0 79 0.0017 27.3 2.2 45 173-222 182-226 (228)
No 1
>PLN02300 lactoylglutathione lyase
Probab=99.97 E-value=1.5e-29 Score=226.48 Aligned_cols=186 Identities=90% Similarity=1.473 Sum_probs=156.1
Q ss_pred ccccccccChhHHhhhcCceeeEEEEEeCCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCCCCceEEEEEeeccC
Q 024414 81 ASTSAAHESALEWVKKDKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYG 160 (268)
Q Consensus 81 ~~~~~~~~g~~~~~~~~~~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~ 160 (268)
+++++.......|.++++.+|+||+|.|+|++++++||+++|||++..+...++..+..+++..++...++.+++.....
T Consensus 5 ~~~~~~~~~~~~~~~~~i~~l~Hv~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~ 84 (286)
T PLN02300 5 ASTAAEAEDLLEWPKKDKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSNFVVELTYNYG 84 (286)
T ss_pred cccChhhhhhhcCCccccceEEEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCcEEEEEEccCCCCCceEEEEeccCC
Confidence 35566777788898889999999999999999999999999999998765544455566777666544566778766444
Q ss_pred CCCCCCCCCeeEEEEEECCHHHHHHHHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEeCCCCCCceeEEEEcCC
Q 024414 161 VDKYDIGTGFGHFGIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPTPEPLCQVMLRVGD 240 (268)
Q Consensus 161 ~~~~~~g~g~~hi~f~V~Did~~~~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~~~~~~~l~~v~L~v~d 240 (268)
......+.|+.|++|.|+|+++++++++++|+++..++...++|..+.+|++|||||.|||+++.+.+.+++|+.|.|.|
T Consensus 85 ~~~~~~~~g~~hia~~v~dvd~~~~~l~~~G~~i~~~~~~~~~g~~~~~~~~DPdG~~iEl~~~~~~~~~~~~~~l~~~d 164 (286)
T PLN02300 85 VDKYDIGTGFGHFGIAVEDVAKTVELVKAKGGKVTREPGPVKGGKSVIAFVKDPDGYKFELIQRGPTPEPLCQVMLRVGD 164 (286)
T ss_pred CCccccCCCccEEEEEeCCHHHHHHHHHHCCCeeecCCcccCCCceEEEEEECCCCCEEEEEeCCCCCCcceeEEEEeCC
Confidence 44444567889999999999999999999999998888777766667889999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCeEeeeecCCCCC
Q 024414 241 LDRSINFYEQAFGMELLRKRDNPEYK 266 (268)
Q Consensus 241 ~~~s~~FY~~vlG~~~~~~~~~p~~~ 266 (268)
++++.+||+++|||++.+..+.|+.+
T Consensus 165 ~~~a~~Fy~~~lg~~~~~~~~~~~~~ 190 (286)
T PLN02300 165 LDRSIKFYEKAFGMKLLRKRDNPEYK 190 (286)
T ss_pred HHHHHHHHHhccCCEEEeeecccccc
Confidence 99999999999999998766666544
No 2
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=99.93 E-value=3e-25 Score=186.76 Aligned_cols=162 Identities=56% Similarity=1.016 Sum_probs=148.3
Q ss_pred ChhHHhhhcCceeeEEEEEeCCHHHHHHHHHhhcCCEEEEEecCCC-----------CceeEEEEeeCCCCceEEEEEee
Q 024414 89 SALEWVKKDKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPE-----------EKYTNAFLGYGPEDSHFVIELTY 157 (268)
Q Consensus 89 g~~~~~~~~~~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~-----------~~~~~~~l~~g~~~~~~~lel~~ 157 (268)
.+.+|.+++..++-|+++.|.|.++++.||+++|||++....+.++ +.+...++++|+++.++++|+++
T Consensus 6 d~~~~~~~~~~r~LH~VfkVgdr~kti~Fyt~vlgMkvLRheef~egc~aacngpyd~kwSktmvGyGpEdshFViELTY 85 (299)
T KOG2943|consen 6 DLLCWMKADTRRALHYVFKVGDRAKTIDFYTEVLGMKVLRHEEFEEGCEAACNGPYDGKWSKTMVGYGPEDSHFVIELTY 85 (299)
T ss_pred hhhhhhhccchheeeEeEeecchHHHHHHHHHhhcceeeehhhhhhhhhhhcCCCcccchhhhheecCCCcccEEEEEEe
Confidence 4579999999999999999999999999999999999998877766 67788999999999999999999
Q ss_pred ccCCCCCCCCCCeeEEEEEECCHHHHHHHHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEeCCCCCCceeEEEE
Q 024414 158 NYGVDKYDIGTGFGHFGIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPTPEPLCQVMLR 237 (268)
Q Consensus 158 ~~~~~~~~~g~g~~hi~f~V~Did~~~~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~~~~~~~l~~v~L~ 237 (268)
+++...+..|+++.||.+.++|+-..++.+...|.+. ++...+++.||||+.|+++++.|.+.++++|+|+
T Consensus 86 NYgV~~YelGndfg~i~I~s~dv~~~ve~v~~p~~~~---------~g~~~~~v~dPdGykF~l~~~~p~s~pv~~V~l~ 156 (299)
T KOG2943|consen 86 NYGVSKYELGNDFGGITIASDDVFSKVEKVNAPGGKG---------SGCGIAFVKDPDGYKFYLIDRGPQSDPVLQVMLN 156 (299)
T ss_pred ccCccceeccCCcccEEEeHHHHHHHHHHhcCcCCcc---------cceEEEEEECCCCcEEEEeccCCCCCCeEEEEEE
Confidence 9999999999999999999999888888888777532 2345688999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHhcCCeEeee
Q 024414 238 VGDLDRSINFYEQAFGMELLRK 259 (268)
Q Consensus 238 v~d~~~s~~FY~~vlG~~~~~~ 259 (268)
|+|+++++.||+++|||++.++
T Consensus 157 VgdL~ks~kyw~~~lgM~ilek 178 (299)
T KOG2943|consen 157 VGDLQKSIKYWEKLLGMKILEK 178 (299)
T ss_pred ehhHHHHHHHHHHHhCcchhhh
Confidence 9999999999999999999885
No 3
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.87 E-value=1.2e-20 Score=169.73 Aligned_cols=153 Identities=24% Similarity=0.306 Sum_probs=114.4
Q ss_pred CceeeEEEEEeCCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCCCCceEEEEEeeccCCCCCCCCCCeeEEEEEE
Q 024414 98 KRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAV 177 (268)
Q Consensus 98 ~~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~V 177 (268)
+.+|+||+|.|+|++++++||+++|||++..+... .+++..........+.+... ...++.|++|.|
T Consensus 2 i~~i~Hi~l~V~Dle~s~~FY~~~LG~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~-------~~~g~~hiaf~v 68 (303)
T TIGR03211 2 VMRLGHVELRVLDLEESLKHYTDVLGLEETGRDGQ------RVYLKAWDEWDHYSVILTEA-------DTAGLDHMAFKV 68 (303)
T ss_pred cceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecCc------eEEEEeccccccceEeeccC-------CCCceeEEEEEe
Confidence 56899999999999999999999999998765321 23443322111223333321 134788999999
Q ss_pred C---CHHHHHHHHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEeCCC---------------------CCCcee
Q 024414 178 D---DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT---------------------PEPLCQ 233 (268)
Q Consensus 178 ~---Did~~~~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~~~~---------------------~~~l~~ 233 (268)
+ |+++++++|+++|+++...+.....+.++.+|++|||||.|||++.... ..+++|
T Consensus 69 ~~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~g~~~~~~DPdG~~iEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~H 148 (303)
T TIGR03211 69 ESEADLERLVKRLEAYGVGTGWIPAGELPGVGRRVRFTLPSGHTMELYAEKEYVGELVGGLNPDPWPDPLRGVGARRLDH 148 (303)
T ss_pred CCHHHHHHHHHHHHHcCCCeeeccCCCCCCcceEEEEECCCCCEEEEEEccccccccccccCCcccccccCCcCceeEEE
Confidence 8 7999999999999998765542223344789999999999999985431 235889
Q ss_pred EEEEcCCHHHHHHHHHHhcCCeEeeeecCC
Q 024414 234 VMLRVGDLDRSINFYEQAFGMELLRKRDNP 263 (268)
Q Consensus 234 v~L~v~d~~~s~~FY~~vlG~~~~~~~~~p 263 (268)
+.|.|.|++++.+||+++|||++......+
T Consensus 149 i~l~V~Dl~~s~~FY~~~LG~~~~~~~~~~ 178 (303)
T TIGR03211 149 CLLYGEDVAENTRFFTEVLGFRLTEQVVLG 178 (303)
T ss_pred EeEEeCCHHHHHHHHHHhcCCEEEeeEEcC
Confidence 999999999999999999999986654444
No 4
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.86 E-value=2.3e-20 Score=167.18 Aligned_cols=151 Identities=25% Similarity=0.379 Sum_probs=113.7
Q ss_pred cCceeeEEEEEeCCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCCCCceEEEEEeeccCCCCCCCCCCeeEEEEE
Q 024414 97 DKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIA 176 (268)
Q Consensus 97 ~~~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~ 176 (268)
++.+|+||.|.|+|++++++||+++|||++..+.+ ..+++..........+.+... ...++.|++|.
T Consensus 1 ~i~~i~hv~l~v~Dl~~s~~FY~~vLGl~~~~~~~------~~~~~~~~~~~~~~~l~l~~~-------~~~~~~hiaf~ 67 (294)
T TIGR02295 1 NILRTGHVELRVTDLDKSREFYVDLLGFRETESDK------EYIYLRGIEEFQHHSLVLTKA-------PSAALSYIGFR 67 (294)
T ss_pred CCceeeEEEEEeCCHHHHHHHHHHccCCEEEEecC------CeEEEeccCcCCceEEEeeeC-------CCcCccEEEEE
Confidence 46799999999999999999999999999876532 134443322211223333321 12467899999
Q ss_pred EC---CHHHHHHHHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEeCC---------------CCCCceeEEEEc
Q 024414 177 VD---DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP---------------TPEPLCQVMLRV 238 (268)
Q Consensus 177 V~---Did~~~~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~~~---------------~~~~l~~v~L~v 238 (268)
|+ |+++++++|+++|+++...+. + +..+.+||+|||||.|||++... .+.+++|+.|.|
T Consensus 68 v~~~~dl~~~~~~l~~~Gv~v~~~~~--~-~~~~~~~~~DPdG~~iEl~~~~~~~~~~~~~~~~~~~~~~~~i~Hv~l~v 144 (294)
T TIGR02295 68 VSKEEDLDKAADFFQKLGHPVRLVRD--G-GQPEALRVEDPFGYPIEFYFEMEKVERLLRRYHRHRGVSPVRLDHFNVFV 144 (294)
T ss_pred eCCHHHHHHHHHHHHhcCCcEEeecC--C-CCceEEEEECCCCCEEEEEEchhhcccccccccccCCccceeeeeEEEEe
Confidence 97 789999999999999876433 2 23488999999999999997331 124689999999
Q ss_pred CCHHHHHHHHHHhcCCeEeeeecCC
Q 024414 239 GDLDRSINFYEQAFGMELLRKRDNP 263 (268)
Q Consensus 239 ~d~~~s~~FY~~vlG~~~~~~~~~p 263 (268)
.|++++.+||+++|||++......+
T Consensus 145 ~dl~~a~~Fy~~~lG~~~~~~~~~~ 169 (294)
T TIGR02295 145 PDVQRALRFYKEELGFRVTEYTEDD 169 (294)
T ss_pred CCHHHHHHHHHHhcCCEEEEEeccC
Confidence 9999999999999999987664443
No 5
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=99.86 E-value=2.1e-20 Score=151.54 Aligned_cols=138 Identities=64% Similarity=1.086 Sum_probs=106.3
Q ss_pred hhcCceeeEEEEEeCCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCCCCceEEEEEeeccCCCCCCCCCCeeEEE
Q 024414 95 KKDKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFG 174 (268)
Q Consensus 95 ~~~~~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~ 174 (268)
+..+++|+||.|.|.|++++++||+++|||++......++..+..+++..++......+++.......+...+.++.|++
T Consensus 12 ~~~~~~i~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~hi~ 91 (150)
T TIGR00068 12 KTKKRRLLHTMLRVGDLDKSLDFYTEVLGMKLLRKRDFPEMKFSLAFLGYGDETSAAVIELTHNWGTEKYDLGNGFGHIA 91 (150)
T ss_pred ccCCceEEEEEEEecCHHHHHHHHHHhcCCEEEEEeccCCCceEEEEecCCCCCCccEEEEeecCCCCcccCCCceeEEE
Confidence 45688999999999999999999999999998766544444444566665543334556665433333333456888999
Q ss_pred EEECCHHHHHHHHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEeCCCCCCce
Q 024414 175 IAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPTPEPLC 232 (268)
Q Consensus 175 f~V~Did~~~~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~~~~~~~l~ 232 (268)
|.|+|+++++++|.++|+++..++...+++..+.+|++|||||.|||++..+....+|
T Consensus 92 f~v~dld~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~~~~~~~~ 149 (150)
T TIGR00068 92 IGVDDVYKACERVRALGGNVVREPGPVKGGTTVIAFVEDPDGYKIELIQRKSTKDGLG 149 (150)
T ss_pred EecCCHHHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEECCchhhhcc
Confidence 9999999999999999999887776566666678899999999999999887655544
No 6
>PLN02367 lactoylglutathione lyase
Probab=99.86 E-value=3.6e-20 Score=159.24 Aligned_cols=129 Identities=40% Similarity=0.696 Sum_probs=105.6
Q ss_pred hcCceeeEEEEEeCCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCCC---------------CceEEEEEeeccC
Q 024414 96 KDKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPE---------------DSHFVIELTYNYG 160 (268)
Q Consensus 96 ~~~~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~---------------~~~~~lel~~~~~ 160 (268)
.....+.|++|.|+|++++++||+++|||++..+.+.++.++..+|+.+++. +....|||.++.+
T Consensus 71 t~~~~~~HtmlRVkDle~Sl~FYt~vLGm~ll~r~d~pe~~f~lyFL~~~~~~~~p~d~~~r~~~~~~~~~~LELt~n~g 150 (233)
T PLN02367 71 TKGYIMQQTMYRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFMGYEDTASAPTDPTERTVWTFGQKATIELTHNWG 150 (233)
T ss_pred CCCcEEEEEEEEeCCHHHHHHHHHHhcCCEEeEEEecCCCcEEEEEeecCCccccccccccceeeccCCCCEEEEecCCC
Confidence 4567899999999999999999999999999998888888888899865431 1134789988655
Q ss_pred CCC------CCCC----CCeeEEEEEECCHHHHHHHHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEeCC
Q 024414 161 VDK------YDIG----TGFGHFGIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP 226 (268)
Q Consensus 161 ~~~------~~~g----~g~~hi~f~V~Did~~~~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~~~ 226 (268)
... +..+ .|+.||||.|+|+++++++|+++|+++..+|....+ .+.+|++|||||.|||+|...
T Consensus 151 ~e~~~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~erL~a~Gv~~v~~P~~g~~--~riaFIkDPDGn~IEL~e~~~ 224 (233)
T PLN02367 151 TESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFEELGVEFVKKPNDGKM--KGIAFIKDPDGYWIEIFDLKT 224 (233)
T ss_pred CCccccchhcccCCCCCCCceEEEEEcCCHHHHHHHHHHCCCEEEeCCccCCc--eEEEEEECCCCCEEEEEeccc
Confidence 432 3322 489999999999999999999999999877765432 467899999999999998765
No 7
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.86 E-value=3.4e-20 Score=165.78 Aligned_cols=150 Identities=23% Similarity=0.322 Sum_probs=113.4
Q ss_pred CceeeEEEEEeCCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCCCCceEEEEEeeccCCCCCCCCCCeeEEEEEE
Q 024414 98 KRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAV 177 (268)
Q Consensus 98 ~~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~V 177 (268)
+.+|+||+|.|+|++++++||+++|||++..... . ...|+..+... ..+.+.... ..++.|++|.|
T Consensus 1 ~~~i~~v~l~V~Dl~~s~~FY~~~LGl~~~~~~~--~---~~~~~~~~~~~--~~~~l~~~~-------~~~~~~~~f~V 66 (286)
T TIGR03213 1 VRGLGYLGIGVSDVDAWREFATEVLGMMVASEGE--N---DALYLRLDSRA--HRIAVHPGE-------SDDLAYAGWEV 66 (286)
T ss_pred CceeeEEEEEeCCHHHHHHHHHhccCcccccCCC--C---ceEEEEcCCCc--eEEEEEECC-------cCCeeeEeeee
Confidence 4689999999999999999999999998764321 1 13455554322 233333221 13577999999
Q ss_pred CC---HHHHHHHHHHcCCeEeeCCcc--cCCCCeEEEEEECCCCCEEEEEEeCCC------------------CCCceeE
Q 024414 178 DD---VAKTVELIKAKGGKVTREPGP--VKGGNTVIAFIEDPDGYKFELLERGPT------------------PEPLCQV 234 (268)
Q Consensus 178 ~D---id~~~~~L~~~G~~i~~~p~~--~~~G~~~~~~~~DPdG~~iEl~e~~~~------------------~~~l~~v 234 (268)
+| +++++++|+++|+++...+.. ...|..+.++|.|||||.|||+..... +.+++|+
T Consensus 67 ~~~~~l~~~~~~L~~~Gv~~~~~~~~~~~~~~~~~~~~f~DPdGn~lEl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Hv 146 (286)
T TIGR03213 67 ADEAGLDQVKEKLEKAGVAVTVASAAEARERGVLGLIKFTDPGGNPLEIYYGAVEDFEKPFVSPRAVSGFVTGDQGLGHI 146 (286)
T ss_pred CCHHHHHHHHHHHHHcCCceEECCHHHhhhccceEEEEEECCCCCEEEEEEcccccCCCCCCCCCCCCccccCCccccEE
Confidence 98 889999999999998765532 122446789999999999999963321 2368999
Q ss_pred EEEcCCHHHHHHHHHHhcCCeEeeeec
Q 024414 235 MLRVGDLDRSINFYEQAFGMELLRKRD 261 (268)
Q Consensus 235 ~L~v~d~~~s~~FY~~vlG~~~~~~~~ 261 (268)
.|.|.|++++.+||+++|||++..+..
T Consensus 147 ~l~v~Dle~s~~FY~~~LGf~~~~~~~ 173 (286)
T TIGR03213 147 VLRVPDVDAALAFYTEVLGFQLSDVID 173 (286)
T ss_pred EEEcCCHHHHHHHHHHccCCeEEEeEc
Confidence 999999999999999999999876643
No 8
>PRK10291 glyoxalase I; Provisional
Probab=99.85 E-value=8.8e-20 Score=143.88 Aligned_cols=126 Identities=61% Similarity=1.065 Sum_probs=98.0
Q ss_pred EEeCCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCCCCceEEEEEeeccCCCCCCCCCCeeEEEEEECCHHHHHH
Q 024414 106 YRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDVAKTVE 185 (268)
Q Consensus 106 l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~V~Did~~~~ 185 (268)
|.|+|++++++||+++|||++......++..+..+++..++......+++...........+.++.|+||.|+|++++++
T Consensus 2 l~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~hlaf~V~d~~~~~~ 81 (129)
T PRK10291 2 LRVGDLQRSIDFYTNVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWGVDKYELGTAYGHIALSVDNAAEACE 81 (129)
T ss_pred EEecCHHHHHHHHHhccCCEEEEeecCCCCcEEEEEEccCCCCCcceEEeeecCCCCCCcCCCCeeEEEEEeCCHHHHHH
Confidence 78999999999999999999887665555566677776654433445666654443444456688999999999999999
Q ss_pred HHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEeCCCCCCc
Q 024414 186 LIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPTPEPL 231 (268)
Q Consensus 186 ~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~~~~~~~l 231 (268)
+|+++|+++..++...+++..+.+|++|||||.|||++....+..+
T Consensus 82 ~l~~~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~~~~~~~~ 127 (129)
T PRK10291 82 KIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEKDAGRGL 127 (129)
T ss_pred HHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEEcccccccc
Confidence 9999999988766666566567788999999999999987655444
No 9
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=99.83 E-value=4.3e-19 Score=153.21 Aligned_cols=158 Identities=23% Similarity=0.370 Sum_probs=124.4
Q ss_pred hcCceeeEEEEEeCCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCCCCceEEEEEeecc-CCCCCCCCCCeeEEE
Q 024414 96 KDKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNY-GVDKYDIGTGFGHFG 174 (268)
Q Consensus 96 ~~~~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~-~~~~~~~g~g~~hi~ 174 (268)
+..+.++.|.|.|+|++++..||+++||+++..+.. ..+.+..+.. ..+.+.+.. ...+..+..|+.|++
T Consensus 6 ~~~~~v~~v~L~vrdL~~~~~FY~~ilGL~v~~~~~------~~v~L~vgg~---~LL~L~q~~~a~~~~~~~aGLyH~A 76 (265)
T COG2514 6 TTPTFVGAVTLNVRDLDSMTSFYQEILGLQVLEETD------GSVTLGVGGT---PLLTLEQFPDARRPPPRAAGLYHTA 76 (265)
T ss_pred CCCcEEEEEEEEeccHHHHHHHHHHhhCCeeeeccC------ceEEEeeCCE---EEEEEEeCCCCCCCCccccceeeee
Confidence 345678899999999999999999999999988755 2455655542 345555533 333345778999999
Q ss_pred EEECC---HHHHHHHHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEeCCC------------------------
Q 024414 175 IAVDD---VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT------------------------ 227 (268)
Q Consensus 175 f~V~D---id~~~~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~~~~------------------------ 227 (268)
|.+++ +.++..++...|..+.+. .++.....+|+.||+||-||++.++|.
T Consensus 77 fLlP~r~~L~~~l~hl~~~~~~l~Ga---~DH~vSEAlYl~DPEGNGIEiYaDrp~~~W~~~~~~v~m~t~~ld~~~ll~ 153 (265)
T COG2514 77 FLLPTREDLARVLNHLAEEGIPLVGA---SDHLVSEALYLEDPEGNGIEIYADRPRSTWDWQNDQVKMDTEPLDVEALLE 153 (265)
T ss_pred eecCCHHHHHHHHHHHHhcCCccccc---CcchhheeeeecCCCCCeEEEEecCChHHhcccCCeeeecccccCHHHHhh
Confidence 99995 778888999999887522 234456789999999999999988642
Q ss_pred ------------CCCceeEEEEcCCHHHHHHHHHHhcCCeEeeeecCCCCCC
Q 024414 228 ------------PEPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKV 267 (268)
Q Consensus 228 ------------~~~l~~v~L~v~d~~~s~~FY~~vlG~~~~~~~~~p~~~~ 267 (268)
...++||+|+|.|++++.+||+++|||+++.+ .|.+.|
T Consensus 154 ~~~~~~~~g~p~~t~IGHvHL~v~~l~eA~~fY~~~LG~~~~~~--~~~A~F 203 (265)
T COG2514 154 EATKEPWTGLPAGTIIGHVHLKVADLEEAEQFYEDVLGLEVTAR--GPSALF 203 (265)
T ss_pred hccccccccCCCCcEEeEEEEEeCCHHHHHHHHHHhcCCeeeec--CCcceE
Confidence 12479999999999999999999999998887 666655
No 10
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=99.81 E-value=1.6e-18 Score=145.48 Aligned_cols=129 Identities=38% Similarity=0.670 Sum_probs=100.5
Q ss_pred hcCceeeEEEEEeCCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCCCC---------------ceEEEEEeeccC
Q 024414 96 KDKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPED---------------SHFVIELTYNYG 160 (268)
Q Consensus 96 ~~~~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~---------------~~~~lel~~~~~ 160 (268)
+...++.|++|.|+|++++++||+++|||++..+...++.++..+|+..++.. ....|+|.++..
T Consensus 23 ~~~~~~~Ht~i~V~Dle~Si~FY~~vLG~~~~~r~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~l~~~~~~lEL~~~~~ 102 (185)
T PLN03042 23 TKGYIMQQTMFRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDSETAPTDPPERTVWTFGRKATIELTHNWG 102 (185)
T ss_pred CCCcEEEEEEEeeCCHHHHHHHHHhhcCCEEEEEEEcCCCceEEEEEecCCcccCCcchhhcccccccCCCEEEEEEcCC
Confidence 46779999999999999999999999999998887766667777887643211 234688887543
Q ss_pred CCC------CC----CCCCeeEEEEEECCHHHHHHHHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEeCC
Q 024414 161 VDK------YD----IGTGFGHFGIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP 226 (268)
Q Consensus 161 ~~~------~~----~g~g~~hi~f~V~Did~~~~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~~~ 226 (268)
... +. .+.|+.|++|.|+|+++++++|+++|+.+...+.... ..+.+|++||||+.|||++...
T Consensus 103 ~~~~p~~~~~~~~~~~~~G~~Hlaf~V~Dvd~~~~~L~~~Gv~v~~~p~~~~--~~~~~fi~DPdG~~IEl~e~~~ 176 (185)
T PLN03042 103 TESDPEFKGYHNGNSDPRGFGHIGITVDDVYKACERFEKLGVEFVKKPDDGK--MKGLAFIKDPDGYWIEIFDLKR 176 (185)
T ss_pred CcccccccccccCCCCCCCccEEEEEcCCHHHHHHHHHHCCCeEEeCCccCC--ceeEEEEECCCCCEEEEEECCC
Confidence 221 22 1248999999999999999999999999886654332 2467888999999999998654
No 11
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.81 E-value=2.2e-18 Score=137.80 Aligned_cols=123 Identities=26% Similarity=0.333 Sum_probs=90.4
Q ss_pred CceeeEEEEEeCCHHHHHHHHHhhcCCEEEEEecCCC-----------CceeEEEEeeCCCCceEEEEEeeccCCC----
Q 024414 98 KRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPE-----------EKYTNAFLGYGPEDSHFVIELTYNYGVD---- 162 (268)
Q Consensus 98 ~~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~-----------~~~~~~~l~~g~~~~~~~lel~~~~~~~---- 162 (268)
+.+++||+|.|+|++++++||++ |||++.......+ .....+++.... ....+++.......
T Consensus 1 ~~~i~Hi~i~v~Dl~~s~~FY~~-LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~--g~~~iel~~~~~~~~~~~ 77 (142)
T cd08353 1 VSRMDNVGIVVRDLEAAIAFFLE-LGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTPD--GHSRLELSKFHHPAVIAD 77 (142)
T ss_pred CceeeeEEEEeCCHHHHHHHHHH-cCCEEccccccChHHHHHhcCCCCceEEEEEEeCCC--CCceEEEEEecCCCCcCc
Confidence 36899999999999999999998 9998865543211 123334454322 23456766532111
Q ss_pred ---CCCCCCCeeEEEEEECCHHHHHHHHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEe
Q 024414 163 ---KYDIGTGFGHFGIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 224 (268)
Q Consensus 163 ---~~~~g~g~~hi~f~V~Did~~~~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~ 224 (268)
....+.|+.|+||.|+|+++++++|+++|+++..++...++ +.+.+|++||||+.|||+|.
T Consensus 78 ~~~~~~~~~g~~hia~~v~d~d~~~~~l~~~G~~~~~~~~~~~~-~~r~~~~~DPdG~~iEl~e~ 141 (142)
T cd08353 78 HRPAPVNALGLRRVMFAVDDIDARVARLRKHGAELVGEVVQYEN-SYRLCYIRGPEGILIELAEQ 141 (142)
T ss_pred CCCCCCCCCCceEEEEEeCCHHHHHHHHHHCCCceeCCceecCC-CeEEEEEECCCCCEEEeeec
Confidence 11235688999999999999999999999999876655544 46889999999999999984
No 12
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=99.80 E-value=3.5e-18 Score=132.12 Aligned_cols=120 Identities=54% Similarity=0.938 Sum_probs=90.3
Q ss_pred eeEEEEEeCCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCCCCceEEEEEeeccCC-CCCCCCCCeeEEEEEECC
Q 024414 101 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGV-DKYDIGTGFGHFGIAVDD 179 (268)
Q Consensus 101 l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~-~~~~~g~g~~hi~f~V~D 179 (268)
|+||+|.|+|++++++||+++||+++......++.++..+++..........+++...... .....+.+..|++|.|+|
T Consensus 1 ~~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~v~d 80 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYPDEDSEGVLELTYNWGTEEPYDNGNGFGHLAFAVDD 80 (121)
T ss_pred CeeEEEEecCcHHHHHHHHhccCCeEEEEEecCCCceEEEEecCCCCCCccEEEEEecCCCCCCcCCCCCeEEEEEEeCC
Confidence 5899999999999999999999999887654443344556676543102234555543222 223344578899999999
Q ss_pred HHHHHHHHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEEE
Q 024414 180 VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 222 (268)
Q Consensus 180 id~~~~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~ 222 (268)
+++++++++++|+++..++... +..+.+|++|||||+|||+
T Consensus 81 id~~~~~l~~~G~~~~~~~~~~--~~~~~~~~~DpdG~~iE~~ 121 (121)
T cd07233 81 VYAACERLEEMGVEVTKPPGDG--GMKGIAFIKDPDGYWIELI 121 (121)
T ss_pred HHHHHHHHHHCCCEEeeCCccC--CCceEEEEECCCCCEEEeC
Confidence 9999999999999998877655 3457899999999999985
No 13
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=99.80 E-value=4e-18 Score=135.93 Aligned_cols=123 Identities=23% Similarity=0.274 Sum_probs=93.3
Q ss_pred eeEEEEEeCCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCCCCceEEEEEeeccCCCC------CCCCCCeeEEE
Q 024414 101 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDK------YDIGTGFGHFG 174 (268)
Q Consensus 101 l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~------~~~g~g~~hi~ 174 (268)
|+|+.|.|+|++++++||+++|||++......+ +....++..+ ...+++........ ...+.+..|++
T Consensus 1 ~~Hi~i~V~D~e~s~~FY~~vLGf~~~~~~~~~--~~~~~~~~~g----~~~l~l~~~~~~~~~~~~~~~~~~~g~~hia 74 (136)
T cd08342 1 FDHVEFYVGNAKQLASWFSTKLGFEPVAYHGSE--DKASYLLRQG----DINFVLNSPLNSFAPVADFLEKHGDGVCDVA 74 (136)
T ss_pred CeEEEEEeCCHHHHHHHHHHhcCCeEEEecCCC--ceEEEEEEcC----CEEEEEecCCCCCCchHHHHHhcCCceEEEE
Confidence 689999999999999999999999988764432 1223334322 24555554222111 12456889999
Q ss_pred EEECCHHHHHHHHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEeCCCCCC
Q 024414 175 IAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPTPEP 230 (268)
Q Consensus 175 f~V~Did~~~~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~~~~~~~ 230 (268)
|.|+|+++++++|+++|+++..+|...++ +.+.++++||||+.|||+|+....++
T Consensus 75 ~~V~Dvda~~~~l~~~G~~v~~~p~~~~~-~~~~~~i~dp~G~~ie~~~~~~~~~~ 129 (136)
T cd08342 75 FRVDDAAAAYERAVARGAKPVQEPVEEPG-ELKIAAIKGYGDSLHTLVDRKGYKGP 129 (136)
T ss_pred EEeCCHHHHHHHHHHcCCeEccCceecCC-eEEEEEEeccCCcEEEEEecCCCCCc
Confidence 99999999999999999999988887554 57899999999999999998776443
No 14
>PRK11478 putative lyase; Provisional
Probab=99.80 E-value=3.6e-18 Score=133.95 Aligned_cols=123 Identities=22% Similarity=0.271 Sum_probs=85.0
Q ss_pred CceeeEEEEEeCCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCCCCceEEEEEeeccC---CCCCCCCCCeeEEE
Q 024414 98 KRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYG---VDKYDIGTGFGHFG 174 (268)
Q Consensus 98 ~~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~---~~~~~~g~g~~hi~ 174 (268)
+.+|+||+|.|+|++++++||+++|||++..+...+........+..+. ...+++..... ........|+.|++
T Consensus 4 i~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~---~~~l~l~~~~~~~~~~~~~~~~g~~hi~ 80 (129)
T PRK11478 4 LKQVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREARDSWKGDLALNG---QYVIELFSFPFPPERPSRPEACGLRHLA 80 (129)
T ss_pred cceecEEEEEcCCHHHHHHHHHHHhCCEecccccccccccceeeEecCC---CcEEEEEEecCCCCCCCCCCCCceeEEE
Confidence 5689999999999999999999999999864322111111111222221 23455554211 11112345788999
Q ss_pred EEECCHHHHHHHHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEe
Q 024414 175 IAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 224 (268)
Q Consensus 175 f~V~Did~~~~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~ 224 (268)
|.|+|+++++++|+++|+++........+| .+.+|++|||||.|||+|.
T Consensus 81 f~v~d~~~~~~~l~~~G~~~~~~~~~~~~g-~~~~~~~DPdG~~iEl~~~ 129 (129)
T PRK11478 81 FSVDDIDAAVAHLESHNVKCEAIRVDPYTQ-KRFTFFNDPDGLPLELYEQ 129 (129)
T ss_pred EEeCCHHHHHHHHHHcCCeeeccccCCCCC-CEEEEEECCCCCEEEEEeC
Confidence 999999999999999999986443333333 5789999999999999973
No 15
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.78 E-value=2e-17 Score=130.73 Aligned_cols=115 Identities=45% Similarity=0.890 Sum_probs=87.3
Q ss_pred ceeeEEEEEeCCHHHHHHHHHhhcCCEEEEEecCCC-----------CceeEEEEeeCCCCceEEEEEeeccCCCCCCCC
Q 024414 99 RRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPE-----------EKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIG 167 (268)
Q Consensus 99 ~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~-----------~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g 167 (268)
.++.|++|.|+|++++++||+++|||++..+...++ +.+..+++.+++......+++.++.+..++..+
T Consensus 1 ~~~~Hv~irV~DlerSi~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~lEL~~n~~~~~~~~g 80 (127)
T cd08358 1 RRALHFVFKVGNRNKTIKFYREVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMIGYGPEDDHFVVELTYNYGIGDYELG 80 (127)
T ss_pred CceEEEEEEeCCHHHHHHHHHHhcCCEEEeeecCccccccccccCCCCcEEEEEEecCCCCCccEEEeEecCCCCCCCCC
Confidence 368999999999999999999999999887665444 333345565544445678999987666556656
Q ss_pred CCeeEEEEEECCHHHHHHHHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEE
Q 024414 168 TGFGHFGIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 223 (268)
Q Consensus 168 ~g~~hi~f~V~Did~~~~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e 223 (268)
.+ |++|.|++. ++.++|+++|+++...+. + .+++.||||+.|||+.
T Consensus 81 ~~--~~hlav~~~-d~~~~l~~~Gv~~~~~~~----~---~~fi~DPDG~~ie~~~ 126 (127)
T cd08358 81 ND--FLGITIHSK-QAVSNAKKHNWPVTEVED----G---VYEVKAPGGYKFYLID 126 (127)
T ss_pred CC--EEEEEEECH-HHHHHHHHCCCceecCCC----C---EEEEECCCCCEEEEec
Confidence 55 566666666 556999999998875433 2 6899999999999985
No 16
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.77 E-value=1.6e-17 Score=128.58 Aligned_cols=121 Identities=29% Similarity=0.399 Sum_probs=85.2
Q ss_pred ceeeEEEEEeCCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCCCCceEEEEEeeccC--C-CCCCCCCCeeEEEE
Q 024414 99 RRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYG--V-DKYDIGTGFGHFGI 175 (268)
Q Consensus 99 ~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~--~-~~~~~g~g~~hi~f 175 (268)
.+|+||+|.|.|++++++||+++|||+........+.......+... .. ..+++..... . .....+.|+.|++|
T Consensus 2 ~~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~-~~--~~i~l~~~~~~~~~~~~~~~~g~~h~~~ 78 (125)
T cd08352 2 FGIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPERGSYKLDLLLN-GG--YQLELFSFPNPPERPSYPEACGLRHLAF 78 (125)
T ss_pred CccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCCCcEEEEEecC-CC--cEEEEEEcCCCCCCCCCCcCCCceEEEE
Confidence 57999999999999999999999999987653322221112222221 22 2344433211 1 11123458889999
Q ss_pred EECCHHHHHHHHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEE
Q 024414 176 AVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 223 (268)
Q Consensus 176 ~V~Did~~~~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e 223 (268)
.|+|+++++++++++|+++..++....+| .+.+|++||+||.|||+|
T Consensus 79 ~v~d~~~~~~~l~~~G~~~~~~~~~~~~~-~~~~~~~DP~G~~iEl~~ 125 (125)
T cd08352 79 SVEDIEAAVKHLKAKGVEVEPIRVDEFTG-KRFTFFYDPDGLPLELYE 125 (125)
T ss_pred EeCCHHHHHHHHHHcCCccccccccCCCc-eEEEEEECCCCCEEEecC
Confidence 99999999999999999987655444443 578999999999999985
No 17
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.77 E-value=1.3e-17 Score=129.38 Aligned_cols=119 Identities=25% Similarity=0.406 Sum_probs=86.9
Q ss_pred eeeEEEEEeCCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCCCCceEEEEEeeccCCCC---CCCCCCeeEEEEE
Q 024414 100 RMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDK---YDIGTGFGHFGIA 176 (268)
Q Consensus 100 ~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~---~~~g~g~~hi~f~ 176 (268)
+|+||+|.|+|++++++||+++|||+.......+..++...|+..++ ...+++........ .....|..|+||.
T Consensus 1 ~~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~g~~hi~f~ 77 (125)
T cd07241 1 KIEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGFESYFLSFDD---GARLELMTRPDIAPSPNEGERTGWAHLAFS 77 (125)
T ss_pred CceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCceEEEEecCC---CcEEEEEcCcccCCCcccCCCCceEEEEEE
Confidence 47999999999999999999999999865544333344456666542 23466654222111 1234578899999
Q ss_pred EC---CHHHHHHHHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEEE
Q 024414 177 VD---DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 222 (268)
Q Consensus 177 V~---Did~~~~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~ 222 (268)
|+ |+++++++|+++|+++..++...++| .+.++++|||||.|||.
T Consensus 78 v~~~~~v~~~~~~l~~~g~~~~~~~~~~~~g-~~~~~~~DPdG~~iE~~ 125 (125)
T cd07241 78 VGSKEAVDELTERLRADGYLIIGEPRTTGDG-YYESVILDPEGNRIEIT 125 (125)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEeCceecCCC-eEEEEEECCCCCEEEeC
Confidence 96 48999999999999998766555544 45577999999999983
No 18
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=99.77 E-value=2e-17 Score=136.17 Aligned_cols=127 Identities=29% Similarity=0.334 Sum_probs=89.1
Q ss_pred CceeeEEEEEeCCHHHHHHHHHhhcCCEEEEEe----cC--------------CCCceeEEEEeeCCCCceEEEEEeecc
Q 024414 98 KRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKR----DI--------------PEEKYTNAFLGYGPEDSHFVIELTYNY 159 (268)
Q Consensus 98 ~~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~----~~--------------~~~~~~~~~l~~g~~~~~~~lel~~~~ 159 (268)
.++++||+|.|+|+++|++||+++|||++..+. .. ....+..+++..++ ...+++.+..
T Consensus 2 ~~~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---~~~ieL~~~~ 78 (162)
T TIGR03645 2 PRTFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGD---RIGVELFEFK 78 (162)
T ss_pred CceEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCC---CCcEEEEecc
Confidence 468999999999999999999999999875321 10 01124456665443 2347777643
Q ss_pred CCCCCC-----CCCCeeEEEEEECCHHHHHHHHHHcCCeEeeCC-ccc-CC-CCeEEEEEECCCCCEEEEEEeCCC
Q 024414 160 GVDKYD-----IGTGFGHFGIAVDDVAKTVELIKAKGGKVTREP-GPV-KG-GNTVIAFIEDPDGYKFELLERGPT 227 (268)
Q Consensus 160 ~~~~~~-----~g~g~~hi~f~V~Did~~~~~L~~~G~~i~~~p-~~~-~~-G~~~~~~~~DPdG~~iEl~e~~~~ 227 (268)
...... .+.|+.|+||.|+|+++++++|+++|+++..++ ... +. ...+.+|++|||||.|||+++..+
T Consensus 79 ~~~~~~~~~~~~~~g~~Hla~~v~dida~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~~~ 154 (162)
T TIGR03645 79 NQENPEDNFEYWKTGVFHFCVQDPDVEGLAERIVAAGGKKRMPVPRYYYPGEKPYRMIYMEDPFGNILEIYSHSYE 154 (162)
T ss_pred CCCCCCcccccccccceEEEEEcCCHHHHHHHHHHcCCcccCCCccccCCCCCceEEEEEECCCCCEEEEEEcChh
Confidence 221111 246899999999999999999999998764332 211 11 124789999999999999988753
No 19
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=99.76 E-value=3.3e-17 Score=127.57 Aligned_cols=116 Identities=29% Similarity=0.308 Sum_probs=85.0
Q ss_pred CceeeEEEEEeCCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCCCCceEEEEEeeccCCCCCCCCCCeeEEEEEE
Q 024414 98 KRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAV 177 (268)
Q Consensus 98 ~~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~V 177 (268)
+.+|+||.|.|+|++++++||+++|||++...... ..+++..........+.+... ...++.|++|.|
T Consensus 2 ~~~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~-------~~~~~~hiaf~v 69 (122)
T cd07265 2 VLRPGHVQLRVLDLEEAIKHYREVLGLDEVGRDDQ-----GRVYLKAWDEFDHHSIVLREA-------DTAGLDFMGFKV 69 (122)
T ss_pred cceEeEEEEEeCCHHHHHHHHHhccCCEeeeecCC-----ceEEEEccCCCcccEEEeccC-------CCCCeeEEEEEe
Confidence 57899999999999999999999999998754321 124444322222223433221 134678999999
Q ss_pred C---CHHHHHHHHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEeC
Q 024414 178 D---DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 225 (268)
Q Consensus 178 ~---Did~~~~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~~ 225 (268)
+ |+++++++|+++|+++...+.....+.++.+||+|||||.||+++..
T Consensus 70 ~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 120 (122)
T cd07265 70 LDDADLEKLEARLQAYGVAVERIPAGELPGVGRRVRFQLPSGHTMELYADK 120 (122)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEcccCCCCCCceEEEEECCCCCEEEEEEec
Confidence 7 79999999999999987655433334457899999999999998764
No 20
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=99.76 E-value=5.2e-17 Score=130.93 Aligned_cols=118 Identities=17% Similarity=0.247 Sum_probs=85.9
Q ss_pred CceeeEEEEEeCCHHHHHHHHHhhcCCEEEEEecCCCCc-eeEEEEeeCCCCceEEEEEeeccCCCCCCCCCCeeEEEEE
Q 024414 98 KRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEK-YTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIA 176 (268)
Q Consensus 98 ~~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~-~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~ 176 (268)
..+|+||+|.|+|++++.+||+++|||++..+...+++. ....|+..+...+ .+.+... .+.++.|+||.
T Consensus 4 ~~~l~Hv~l~v~Dle~s~~FY~~vLGf~~~~~~~~~~~~~~~~~~l~~~~~~h--~~~~~~~-------~~~~~~Hiaf~ 74 (143)
T cd07243 4 AHRLDHCLLTGEDIAETTRFFTDVLDFYLAERVVDPDGGTRVGSFLSCSNKPH--DIAFVGG-------PDGKLHHFSFF 74 (143)
T ss_pred CceeCEEEEecCCHHHHHHHHHHhcCCEEEEEEecCCCCeEEEEEEecCCCcc--eEEEecC-------CCCCceEEEEE
Confidence 568999999999999999999999999986654322222 2245555443322 2333211 13578899999
Q ss_pred ECCHHH---HHHHHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEe
Q 024414 177 VDDVAK---TVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 224 (268)
Q Consensus 177 V~Did~---~~~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~ 224 (268)
|+|+++ +.++|+++|+++..+|.....+..+.+||.|||||.|||++.
T Consensus 75 v~d~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~yf~DPdG~~iEl~~~ 125 (143)
T cd07243 75 LESWEDVLKAGDIISMNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFAG 125 (143)
T ss_pred cCCHHHHHHHHHHHHHcCCceEECCcCCCCCCceEEEEECCCCCEEEEecC
Confidence 999877 678999999998766654443345789999999999999864
No 21
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.76 E-value=1.9e-17 Score=134.97 Aligned_cols=122 Identities=23% Similarity=0.346 Sum_probs=87.7
Q ss_pred eeeEEEEEeCCHHHHHHHHHhhcCCEEEEEecCC-CCceeEEEEeeCCCCceEEEEEeeccCCCCCCCCCCeeEEEEEEC
Q 024414 100 RMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIP-EEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVD 178 (268)
Q Consensus 100 ~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~-~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~V~ 178 (268)
+|+||+|.|+|++++++||+++||+++......+ ..+...+|+..++... .++... ..... ..++++.||||.|+
T Consensus 1 ri~Hv~l~V~Dle~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~-~~l~~-~~~~g~~Hiaf~v~ 76 (153)
T cd07257 1 RLGHVVLEVPDFAASFDWYTETFGLKPSDVIYLPGPGNPVAAFLRLDRGEE--YVDHHT-LALAQ-GPESGVHHAAFEVH 76 (153)
T ss_pred CccEEEEecCCHHHHHHHHHHhcCCeEEeeEecCCCCCcEEEEEecCCCCC--cccchH-HHHhc-CCCCceeEEEEEcC
Confidence 5899999999999999999999999987654332 2333566776543210 011100 00000 11468999999999
Q ss_pred CHHHHH---HHHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEeC
Q 024414 179 DVAKTV---ELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 225 (268)
Q Consensus 179 Did~~~---~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~~ 225 (268)
|++++. ++|+++|+++..++.....|....+|++|||||.|||+...
T Consensus 77 die~~~~~~~~L~~~Gv~v~~~~g~~~~g~~~~~y~~DPdG~~iEl~~~~ 126 (153)
T cd07257 77 DFDAQGLGHDYLREKGYEHVWGVGRHILGSQIFDYWFDPWGFIVEHYTDG 126 (153)
T ss_pred CHHHHHHHHHHHHHCCCcEeecCCccCCCCCEEEEEECCCCCEEEEEcCc
Confidence 999986 99999999988766655555556789999999999999665
No 22
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.75 E-value=7.6e-17 Score=128.15 Aligned_cols=119 Identities=24% Similarity=0.309 Sum_probs=88.5
Q ss_pred ceeeEEEEEeCCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCCCCceEEEEEeeccCCCCCCCCCCeeEEEEEEC
Q 024414 99 RRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVD 178 (268)
Q Consensus 99 ~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~V~ 178 (268)
.+|+||+|.|+|++++++||+++||+++...... ...|+..+.......+.+..... ...++.|++|.|+
T Consensus 2 ~~l~hi~l~v~dl~~s~~FY~~vlGl~~~~~~~~-----~~~~~~~~~~~~~~~i~l~~~~~-----~~~g~~hiaf~v~ 71 (134)
T cd08360 2 RRLGHVVLFVPDVEAAEAFYRDRLGFRVSDRFKG-----RGAFLRAAGGGDHHNLFLIKTPA-----PMAGFHHAAFEVG 71 (134)
T ss_pred ceeeEEEEEcCCHHHHHHHHHHhcCCEEEEEecC-----cEEEEECCCCCCCcEEEEecCCC-----CCCcceEEEEEeC
Confidence 4799999999999999999999999998755321 24566554322223455443211 1468999999999
Q ss_pred CHHHHH---HHHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEeCCC
Q 024414 179 DVAKTV---ELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT 227 (268)
Q Consensus 179 Did~~~---~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~~~~ 227 (268)
|++++. ++|+++|+++..++...+.+..+.+|++||+|+.|||......
T Consensus 72 d~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~y~~DP~G~~iEl~~~~~~ 123 (134)
T cd08360 72 DIDEVMLGGNHMLRAGYQTGWGPGRHRIGSNYFWYFRDPWGGEVEYGADMDY 123 (134)
T ss_pred CHHHHHHHHHHHHHcCCccccCCCCcCCCccEEEEEECCCCCEEEEEccccc
Confidence 988776 5999999998766655555556779999999999999976543
No 23
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=99.75 E-value=5.5e-17 Score=129.82 Aligned_cols=118 Identities=22% Similarity=0.417 Sum_probs=87.8
Q ss_pred cCceeeEEEEEeCCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCCCCceEEEEEeeccCCCCCCCCCCeeEEEEE
Q 024414 97 DKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIA 176 (268)
Q Consensus 97 ~~~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~ 176 (268)
|+.+|+||.|.|+|++++++||+++||+++..+.. ..+++..+. ..+.+...........+.++.|++|.
T Consensus 1 ~i~~i~hi~L~v~Dl~~s~~FY~~~lG~~~~~~~~------~~~~~~~~g----~~l~l~~~~~~~~~~~~~~~~hiaf~ 70 (139)
T PRK04101 1 MLKGINHICFSVSNLEKSIEFYEKVLGAKLLVKGR------KTAYFDLNG----LWIALNEEKDIPRNEIHQSYTHIAFS 70 (139)
T ss_pred CCCcEEEEEEEecCHHHHHHHHHhccCCEEEeecC------eeEEEecCC----eEEEeeccCCCCCccCCCCeeEEEEE
Confidence 67899999999999999999999999999875422 234554432 23444332221222234567899999
Q ss_pred EC--CHHHHHHHHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEeC
Q 024414 177 VD--DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 225 (268)
Q Consensus 177 V~--Did~~~~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~~ 225 (268)
++ |+++++++++++|+++..++...++ +.+.+|++|||||.|||.+..
T Consensus 71 v~~~dv~~~~~~l~~~G~~i~~~~~~~~~-~~~~~~~~DPdGn~iEl~~~~ 120 (139)
T PRK04101 71 IEEEDFDHWYQRLKENDVNILPGRERDER-DKKSIYFTDPDGHKFEFHTGT 120 (139)
T ss_pred ecHHHHHHHHHHHHHCCceEcCCccccCC-CceEEEEECCCCCEEEEEeCC
Confidence 98 9999999999999998766555544 458899999999999998654
No 24
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=99.74 E-value=5.4e-17 Score=126.66 Aligned_cols=119 Identities=33% Similarity=0.527 Sum_probs=85.8
Q ss_pred eeeEEEEEeCCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCCCCceEEEEEeeccCCCC------CCCCCCeeEE
Q 024414 100 RMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDK------YDIGTGFGHF 173 (268)
Q Consensus 100 ~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~------~~~g~g~~hi 173 (268)
+|+|++|.|+|++++++||+++|||+........+.+...+++..++ ..+++........ ...+.|+.|+
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~----~~i~l~~~~~~~~~~~~~~~~~~~g~~~i 76 (128)
T TIGR03081 1 RIDHVGIAVPDLEEAAKLYEDVLGAHVSHIEEVPEQGVKVVFIALGN----TKVELLEPLGEDSPIAKFLEKNGGGIHHI 76 (128)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhCCCCccceeCCCCCcEEEEEecCC----EEEEEEecCCCCChHHHHHhcCCCceEEE
Confidence 58999999999999999999999999876543333344556665542 2455544211111 0124578899
Q ss_pred EEEECCHHHHHHHHHHcCCeEeeC-CcccCCCCeEEEEE--ECCCCCEEEEEE
Q 024414 174 GIAVDDVAKTVELIKAKGGKVTRE-PGPVKGGNTVIAFI--EDPDGYKFELLE 223 (268)
Q Consensus 174 ~f~V~Did~~~~~L~~~G~~i~~~-p~~~~~G~~~~~~~--~DPdG~~iEl~e 223 (268)
||.|+|+++++++|+++|+++..+ |...++| .+..++ +||||+.||++|
T Consensus 77 ~~~v~di~~~~~~l~~~G~~~~~~~~~~~~~g-~~~~~~~~~dp~G~~~E~~~ 128 (128)
T TIGR03081 77 AIEVDDIEAALETLKEKGVRLIDEEPRIGAGG-KPVAFLHPKSTGGVLIELEE 128 (128)
T ss_pred EEEcCCHHHHHHHHHHCCCcccCCCCccCCCC-CEEEEecccccCcEEEEecC
Confidence 999999999999999999998764 4444444 455666 699999999975
No 25
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=99.73 E-value=1.2e-16 Score=130.37 Aligned_cols=123 Identities=21% Similarity=0.340 Sum_probs=91.5
Q ss_pred cCceeeEEEEEeCCHHHHHHHHHhhcCCEEEEEecCC---CCceeEEEEeeCCCCceEEEEEeeccCCCCCCCCCCeeEE
Q 024414 97 DKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIP---EEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHF 173 (268)
Q Consensus 97 ~~~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~---~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi 173 (268)
...+|+||+|.|+|++++++||+++||+++....... +.....+++..++..+. +.+... ..+.++.|+
T Consensus 6 ~~~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--i~~~~~------~~~~g~~Hi 77 (154)
T cd07237 6 GDQGLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNGRHHS--LALAEG------PGPKRIHHL 77 (154)
T ss_pred CCCccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCCCCCC--EEEEcC------CCCceeEEE
Confidence 4568999999999999999999999999987643321 11334566666443332 333321 124689999
Q ss_pred EEEECCHH---HHHHHHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEeCCC
Q 024414 174 GIAVDDVA---KTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT 227 (268)
Q Consensus 174 ~f~V~Did---~~~~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~~~~ 227 (268)
+|.|+|++ +++++|+++|+++..++...+.+..+.+|++||+|+.|||+.....
T Consensus 78 af~V~d~~~l~~~~~~L~~~G~~v~~~~~~~~~~~~~~~y~~DPdG~~iEl~~~~~~ 134 (154)
T cd07237 78 MLEVTSLDDVGRAYDRVRARGIPIAMTLGRHTNDRMLSFYVRTPSGFAIEYGWGGRT 134 (154)
T ss_pred EEEcCCHHHHHHHHHHHHHcCCceeccCCccCCCCcEEEEEECCCCcEEEeccCceE
Confidence 99998755 6899999999999877666655567889999999999999977643
No 26
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=99.73 E-value=3.3e-17 Score=126.95 Aligned_cols=120 Identities=28% Similarity=0.409 Sum_probs=85.0
Q ss_pred eeeEEEEEeCCHHHHHHHHHhhcCCEEEEEecC--CCCceeEEEEeeCCCCceEEEEEeeccCCCCCCC---CCCeeEEE
Q 024414 100 RMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDI--PEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDI---GTGFGHFG 174 (268)
Q Consensus 100 ~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~--~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~---g~g~~hi~ 174 (268)
+|+||+|.|+|++++++||+++|||+....... ........++..+.. .+.+............. ..+..|++
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~i~ 78 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRIGEG--HIELFLNPSPPPRASGHSFPEHGGHHIA 78 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEESTSS--CEEEEEEESSSSSSEEEHHHSHTSEEEE
T ss_pred CeEEEEEEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeeccccc--ceeeeeeccccccccccccccccceeEE
Confidence 689999999999999999999999999987762 222233445544432 33343333222211111 01345666
Q ss_pred EEEC---CHHHHHHHHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEE
Q 024414 175 IAVD---DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFEL 221 (268)
Q Consensus 175 f~V~---Did~~~~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl 221 (268)
+.+. |+++++++|++.|+++..++.....+....+|++||+||.|||
T Consensus 79 ~~~~~~~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~y~~Dp~G~~iE~ 128 (128)
T PF00903_consen 79 FLAFDVDDLDAAYERLKAQGVEIVEEPDRYYFGSGYSFYFRDPDGNLIEF 128 (128)
T ss_dssp EEESSHHHHHHHHHHHHHTTGEEEEEEEEHSTTCEEEEEEEETTSEEEEE
T ss_pred EEeccHHHHHHHHHHHhhcCccEEecCCCCCCCCEEEEEEECCCCCEEEC
Confidence 6665 6889999999999999988877777766777899999999997
No 27
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.72 E-value=2.4e-16 Score=123.18 Aligned_cols=113 Identities=17% Similarity=0.258 Sum_probs=83.8
Q ss_pred cCceeeEEEEEeCCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCCCCceEEEEEeeccCCCCCCCCCCeeEEEEE
Q 024414 97 DKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIA 176 (268)
Q Consensus 97 ~~~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~ 176 (268)
|..+++|+.|.|+|++++++||+++|||+...... . ..++..++ ...+.+.... ...+..|++|.
T Consensus 1 ~~~~~~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~----~--~~~~~~~~---~~~l~~~~~~------~~~~~~h~a~~ 65 (123)
T cd08351 1 MTVTLNHTIVPARDREASAEFYAEILGLPWAKPFG----P--FAVVKLDN---GVSLDFAQPD------GEIPPQHYAFL 65 (123)
T ss_pred CcceEeEEEEEcCCHHHHHHHHHHhcCCEeeeccC----C--EEEEEcCC---CcEEEEecCC------CCCCcceEEEE
Confidence 56789999999999999999999999999875321 1 22333332 2345544321 12245699998
Q ss_pred EC--CHHHHHHHHHHcCCeEeeCCccc------CCCCeEEEEEECCCCCEEEEEEe
Q 024414 177 VD--DVAKTVELIKAKGGKVTREPGPV------KGGNTVIAFIEDPDGYKFELLER 224 (268)
Q Consensus 177 V~--Did~~~~~L~~~G~~i~~~p~~~------~~G~~~~~~~~DPdG~~iEl~e~ 224 (268)
++ |+++++++++++|+++..++... ..++.+.+||+|||||.|||++.
T Consensus 66 v~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~~~~f~DPdG~~iEl~~~ 121 (123)
T cd08351 66 VSEEEFDRIFARIRERGIDYWADPQRTEPGQINTNDGGRGVYFLDPDGHLLEIITR 121 (123)
T ss_pred eCHHHHHHHHHHHHHcCCceecCCcccccccccCCCCeeEEEEECCCCCEEEEEec
Confidence 87 69999999999999987665543 12346899999999999999987
No 28
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.72 E-value=2.2e-16 Score=120.89 Aligned_cols=117 Identities=25% Similarity=0.306 Sum_probs=84.3
Q ss_pred EEEEEeCCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCCCCceEEEEEeeccCCC--CCCCCCCeeEEEEEECCH
Q 024414 103 HVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVD--KYDIGTGFGHFGIAVDDV 180 (268)
Q Consensus 103 HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~--~~~~g~g~~hi~f~V~Di 180 (268)
||+|.|.|++++++||+++|||++..+..... +...+.+..... ..+.+.+....... ......+..|++|.|+|+
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~di 78 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMGG-GFRWVTVAPPGS-PETSLVLAPPANPAAMSGLQPGGTPGLVLATDDI 78 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccCC-CcEEEEEeCCCC-CeeEEEEeCCCCccccccccCCCceEEEEEehHH
Confidence 89999999999999999999999987654222 222233332221 13455554432221 112345777999999999
Q ss_pred HHHHHHHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEE
Q 024414 181 AKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 223 (268)
Q Consensus 181 d~~~~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e 223 (268)
++++++++++|+++..++.... ..+.++++|||||.|||+|
T Consensus 79 ~~~~~~l~~~g~~~~~~~~~~~--~~~~~~~~DP~G~~ie~~~ 119 (119)
T cd07263 79 DATYEELKARGVEFSEEPREMP--YGTVAVFRDPDGNLFVLVQ 119 (119)
T ss_pred HHHHHHHHhCCCEEeeccccCC--CceEEEEECCCCCEEEEeC
Confidence 9999999999999988774433 3488999999999999975
No 29
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=99.72 E-value=3.1e-16 Score=129.52 Aligned_cols=122 Identities=22% Similarity=0.352 Sum_probs=88.6
Q ss_pred CceeeEEEEEeCCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCCCCceEEEEEeeccCCCCCCCCCCeeEEEEEE
Q 024414 98 KRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAV 177 (268)
Q Consensus 98 ~~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~V 177 (268)
+.+|+|++|.|+|++++++||+++|||++......+.+.....|+...... ..+.+..... ....++.|+||.|
T Consensus 4 i~~i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~l~~~~~----~~~~~~~hiaf~v 77 (166)
T cd09014 4 VRRLDHVNLLASDVDANRDFMEEVLGFRLREQIRLDNGKEAGAWMSVSNKV--HDVAYTRDPA----GARGRLHHLAYAL 77 (166)
T ss_pred cceeeeEEEEcCCHHHHHHHHHHccCCEEEEEEecCCCceEEEEEeCCCCc--eeEEEecCCC----CCCCCceEEEEEC
Confidence 678999999999999999999999999987654333333334566554322 2333332111 1234688999999
Q ss_pred CC---HHHHHHHHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEeC
Q 024414 178 DD---VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 225 (268)
Q Consensus 178 ~D---id~~~~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~~ 225 (268)
+| +++++++|+++|+++..+|.....+..+.+|+.|||||.|||++..
T Consensus 78 ~~~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~~ 128 (166)
T cd09014 78 DTREDVLRAADIFLENGIFIEAGPGKHGIQQTFFLYVYEPGGNRVELFGGG 128 (166)
T ss_pred CCHHHHHHHHHHHHHcCCccccCCcccCCCCceEEEEECCCCCEEEEEEcC
Confidence 86 5588899999999987666655544456799999999999999984
No 30
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=99.72 E-value=3.9e-16 Score=123.38 Aligned_cols=117 Identities=27% Similarity=0.420 Sum_probs=89.1
Q ss_pred eEEEEEeCCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCCCCceEEEEEeeccCCCCCCCCCCeeEEEEEECCHH
Q 024414 102 LHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDVA 181 (268)
Q Consensus 102 ~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~V~Did 181 (268)
+||+|.|+|++++++||+++||+++......+ +....+++..++... .+.+.... ...++.|++|.|+|++
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~-~~~~~~~~~~~~~~~--~l~~~~~~------~~~~~~hl~~~v~d~~ 71 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGDP-GVDAAAFLRCDEDHH--DLALFPGP------ERPGLHHVAFEVESLD 71 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEccC-CceeEEEEEcCCCcc--eEEEEcCC------CCCCeeEEEEEcCCHH
Confidence 59999999999999999999999987654433 223456666654322 34443321 1467889999999864
Q ss_pred ---HHHHHHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEeCCC
Q 024414 182 ---KTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT 227 (268)
Q Consensus 182 ---~~~~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~~~~ 227 (268)
+++++++++|+++..++...+.+..+.++++|||||.|||++..+.
T Consensus 72 ~~~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~~~ 120 (131)
T cd08343 72 DILRAADRLAANGIQIEFGPGRHGPGNNLFLYFRDPDGNRVELSAEMYR 120 (131)
T ss_pred HHHHHHHHHHHcCCeeEECCCccCCCCcEEEEEECCCCCEEEEEcCCcc
Confidence 7899999999999877766655556788999999999999987654
No 31
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=99.72 E-value=3.9e-16 Score=119.73 Aligned_cols=114 Identities=25% Similarity=0.237 Sum_probs=83.8
Q ss_pred eeEEEEEeCCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCCCCceEEEEEeeccCCCCCCCCCCeeEEEEEECCH
Q 024414 101 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDV 180 (268)
Q Consensus 101 l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~V~Di 180 (268)
+.||+|.|+|++++++||+++||+++..... +.. ..+++..++. ..+.+....... ....+..|++|.|+|+
T Consensus 1 ~~hi~l~v~d~~~s~~FY~~~lG~~~~~~~~-~~~--~~~~~~~~~~---~~~~~~~~~~~~--~~~~~~~~~~f~v~di 72 (114)
T cd07247 1 PVWFELPTTDPERAKAFYGAVFGWTFEDMGD-GGG--DYAVFSTGGG---AVGGLMKAPEPA--AGSPPGWLVYFAVDDV 72 (114)
T ss_pred CEEEEeeCCCHHHHHHHHHhccCceeeeccC-CCC--ceEEEEeCCc---cEEEEecCCCCC--CCCCCeEEEEEEeCCH
Confidence 4799999999999999999999999875543 112 2344444431 122333221111 2234566999999999
Q ss_pred HHHHHHHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEE
Q 024414 181 AKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 223 (268)
Q Consensus 181 d~~~~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e 223 (268)
++++++|+++|+++..++...++ ..+.++++|||||.|+|+|
T Consensus 73 ~~~~~~l~~~g~~~~~~~~~~~~-~~~~~~~~DPdG~~~~l~~ 114 (114)
T cd07247 73 DAAAARVEAAGGKVLVPPTDIPG-VGRFAVFADPEGAVFGLWQ 114 (114)
T ss_pred HHHHHHHHHCCCEEEeCCcccCC-cEEEEEEECCCCCEEEeEC
Confidence 99999999999999888876664 4589999999999999985
No 32
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=99.71 E-value=2.4e-16 Score=122.25 Aligned_cols=115 Identities=26% Similarity=0.362 Sum_probs=84.3
Q ss_pred cCceeeEEEEEeCCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCCCCceEEEEEeeccCCCCCCCCCCeeEEEEE
Q 024414 97 DKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIA 176 (268)
Q Consensus 97 ~~~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~ 176 (268)
++.+++|+.|.|+|++++++||+++|||++....+ ..+++..........+.+... ...+..|++|.
T Consensus 1 ~~~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-------~~~~~~hi~~~ 67 (121)
T cd07266 1 NILRLGHVELRVTDLEKSREFYVDVLGLVETEEDD------DRIYLRGLEEFIHHSLVLTKA-------PVAGLGHIAFR 67 (121)
T ss_pred CcceeeEEEEEcCCHHHHHHHHHhccCCEEeccCC------CeEEEEecCCCceEEEEEeeC-------CCCceeEEEEE
Confidence 46789999999999999999999999999875422 134454322222223333321 12468899999
Q ss_pred EC---CHHHHHHHHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEe
Q 024414 177 VD---DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 224 (268)
Q Consensus 177 V~---Did~~~~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~ 224 (268)
|. |+++++++++++|+++...|.....+..+.+|+.|||||.||++..
T Consensus 68 v~~~~dv~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~ 118 (121)
T cd07266 68 VRSEEDLDKAEAFFQELGLPTEWVEAGEEPGQGRALRVEDPLGFPIEFYAE 118 (121)
T ss_pred CCCHHHHHHHHHHHHHcCCCcccccCCcCCCCccEEEEECCCCCEEEEEec
Confidence 94 7999999999999998765444444445789999999999999864
No 33
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.71 E-value=4.3e-16 Score=120.43 Aligned_cols=118 Identities=29% Similarity=0.458 Sum_probs=85.7
Q ss_pred CceeeEEEEEeCCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCCCCceEEEEEeeccCC---CCCCCCCCeeEEE
Q 024414 98 KRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGV---DKYDIGTGFGHFG 174 (268)
Q Consensus 98 ~~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~---~~~~~g~g~~hi~ 174 (268)
+.+|+|+.|.|+|++++++||+++|||+.....+.. . ...+..++ ..+++...... .....+.+..|++
T Consensus 1 ~~~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~~~~--~--~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~hi~ 72 (125)
T cd07253 1 IKRIDHVVLTVADIEATLDFYTRVLGMEVVRFGEEV--G--RKALRFGS----QKINLHPVGGEFEPAAGSPGPGSDDLC 72 (125)
T ss_pred CcccceEEEEecCHHHHHHHHHHHhCceeecccccC--C--ceEEEeCC----EEEEEecCCCccCcCccCCCCCCceEE
Confidence 367999999999999999999999999987654321 1 23344432 23444432211 1222446788999
Q ss_pred EEECC-HHHHHHHHHHcCCeEeeCCcccCC--CCeEEEEEECCCCCEEEEEE
Q 024414 175 IAVDD-VAKTVELIKAKGGKVTREPGPVKG--GNTVIAFIEDPDGYKFELLE 223 (268)
Q Consensus 175 f~V~D-id~~~~~L~~~G~~i~~~p~~~~~--G~~~~~~~~DPdG~~iEl~e 223 (268)
|.+++ +++++++++++|+++..++....+ +..+.+|++|||||.+|+.+
T Consensus 73 ~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~ 124 (125)
T cd07253 73 LITEPPIDELVAHLEAHGVPIEEGPVPRTGARGPITSVYFRDPDGNLIELSN 124 (125)
T ss_pred EEecccHHHHHHHHHHCCceeecCcccccCCCCCccEEEEECCCCCEEEeee
Confidence 99975 999999999999998776654322 34578999999999999986
No 34
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.71 E-value=4.8e-16 Score=123.19 Aligned_cols=120 Identities=20% Similarity=0.216 Sum_probs=84.1
Q ss_pred cCceeeEEEEEeCCHHHHHHHHHhhcCCEEEEEecCCCCc-eeEEEEeeCCCCceEEEEEeeccCCCCCCCCCCeeEEEE
Q 024414 97 DKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEK-YTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGI 175 (268)
Q Consensus 97 ~~~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~-~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f 175 (268)
|+.+|+||+|.|+|++++++||+++||+++.......... ....++..++ ..+++..... ....++.|++|
T Consensus 1 mi~~i~hv~l~V~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~----~~i~l~~~~~----~~~~~~~Hiaf 72 (131)
T cd08364 1 MIEGLSHITLIVKDLNKTTAFLQNIFNAREVYSSGDKTFSLSKEKFFLIGG----LWIAIMEGDS----LQERTYNHIAF 72 (131)
T ss_pred CcccEeEEEEEeCCHHHHHHHHHHHhCCeeEEecccccccccceeEEEcCC----eEEEEecCCC----CCCCCceEEEE
Confidence 6789999999999999999999999999876543221100 0112222221 2344443211 12246789999
Q ss_pred EEC--CHHHHHHHHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEeC
Q 024414 176 AVD--DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 225 (268)
Q Consensus 176 ~V~--Did~~~~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~~ 225 (268)
.|+ |+++++++|+++|+++..+ .+...+.++.+||+|||||.|||....
T Consensus 73 ~v~~~~ld~~~~~l~~~gv~~~~~-~~~~~~~g~~~yf~DPdG~~iEl~~~~ 123 (131)
T cd08364 73 KISDSDVDEYTERIKALGVEMKPP-RPRVQGEGRSIYFYDFDNHLFELHTGT 123 (131)
T ss_pred EcCHHHHHHHHHHHHHCCCEEecC-CccccCCceEEEEECCCCCEEEEecCC
Confidence 998 7999999999999987643 333344568999999999999998643
No 35
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.70 E-value=3.5e-16 Score=122.74 Aligned_cols=114 Identities=17% Similarity=0.248 Sum_probs=84.1
Q ss_pred cCceeeEEEEEeCCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCCCCceEEEEEeeccCCCCCCCCCCeeEEEEE
Q 024414 97 DKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIA 176 (268)
Q Consensus 97 ~~~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~ 176 (268)
++.+|+||+|.|+|++++.+||+++|||++..... ...|+..+... ..+.+.... ++..|++|.
T Consensus 3 ~~~~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~~~------~~~~l~~~~~~--~~i~l~~~~--------~~~~~iaf~ 66 (124)
T cd08361 3 ELQDIAYVRLGTRDLAGATRFATDILGLQVAERTA------KATYFRSDARD--HTLVYIEGD--------PAEQASGFE 66 (124)
T ss_pred eEEEeeEEEEeeCCHHHHHHHHHhccCceeccCCC------CeEEEEcCCcc--EEEEEEeCC--------CceEEEEEE
Confidence 46789999999999999999999999999864321 24566554322 234443211 345799999
Q ss_pred ECC---HHHHHHHHHHcCCeEeeCCcccC--CCCeEEEEEECCCCCEEEEEEeCC
Q 024414 177 VDD---VAKTVELIKAKGGKVTREPGPVK--GGNTVIAFIEDPDGYKFELLERGP 226 (268)
Q Consensus 177 V~D---id~~~~~L~~~G~~i~~~p~~~~--~G~~~~~~~~DPdG~~iEl~e~~~ 226 (268)
|+| +++++++++++|+++...+.... .+..+.+||+|||||.||++.+..
T Consensus 67 v~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~f~DPdG~~iE~~~~~~ 121 (124)
T cd08361 67 LRDDDALESAATELEQYGHEVRRGTAEECELRKVKAFIAFRDPSGNSIELVVRPS 121 (124)
T ss_pred ECCHHHHHHHHHHHHHcCCceEEcCHHHhhcCCcceEEEEECcCCCEEEEEEeee
Confidence 986 99999999999999876543221 233567899999999999987653
No 36
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=99.70 E-value=8.3e-16 Score=126.30 Aligned_cols=118 Identities=25% Similarity=0.371 Sum_probs=82.6
Q ss_pred ceeeEEEEEeCCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCCCCceEEEEEeeccCCCCCCCCCCeeEEEEEEC
Q 024414 99 RRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVD 178 (268)
Q Consensus 99 ~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~V~ 178 (268)
.+|+||+|.|+|++++++||+++|||++......+.+.....++..+...+ .+.+... .+.++.|++|.|+
T Consensus 2 ~~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~~~~~~~~~~~~~~l~~~~~~~--~i~l~~~-------~~~~~~Hiaf~v~ 72 (161)
T cd07256 2 QRLDHFNLRVPDVDAGLAYYRDELGFRVSEYTEDDDGTTWAAWLHRKGGVH--DTALTGG-------NGPRLHHVAFWVP 72 (161)
T ss_pred ceEEEEEEecCCHHHHHHHHHhccCCEEEEEeccCCCcEEEEEEecCCCcc--eEEEecC-------CCCceeEEEEEcC
Confidence 579999999999999999999999999875443322333345554433222 2333221 2357889999998
Q ss_pred C---HHHHHHHHHHcCCeE--eeCCcccCCCCeEEEEEECCCCCEEEEEEeC
Q 024414 179 D---VAKTVELIKAKGGKV--TREPGPVKGGNTVIAFIEDPDGYKFELLERG 225 (268)
Q Consensus 179 D---id~~~~~L~~~G~~i--~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~~ 225 (268)
| +++++++|+++|+.. ..++.....+..+.+|++|||||.||+++..
T Consensus 73 ~~~~v~~~~~~L~~~G~~~~~~~~p~~~g~~~~~~~y~~DPdG~~iEl~~~~ 124 (161)
T cd07256 73 EPHNIIRTCDLLAAAGYSDRIERGPGRHGISNAFFLYLRDPDGHRIEIYTGD 124 (161)
T ss_pred CHHHHHHHHHHHHHcCCCcccccCCCccCCCCceEEEEECCCCCeEEEeecC
Confidence 6 778889999999863 2333333323456799999999999998654
No 37
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.70 E-value=6.1e-16 Score=126.74 Aligned_cols=118 Identities=19% Similarity=0.215 Sum_probs=84.9
Q ss_pred eeeEEEEEeCCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCCCCceEEEEEeeccCCCC-CCCCCCeeEEEEEEC
Q 024414 100 RMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDK-YDIGTGFGHFGIAVD 178 (268)
Q Consensus 100 ~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~-~~~g~g~~hi~f~V~ 178 (268)
+|+||+|.|+|++++.+||+++|||++..+.. . ...+...+. ..+..+.+........ .....++.|++|.|+
T Consensus 1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~---~--~~~~~~~~~-~~~~~l~l~~~~~~~~~~~~~~~l~Hiaf~v~ 74 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLTDVLGFREVGEEG---D--RVRLEEGGG-GPGAVVDVLEEPDQPRGRPGAGTVHHVAFRVP 74 (157)
T ss_pred CcccEEEEeCCHHHHHHHHHHhcCCEEEeeeC---C--EEEEEecCC-CCCCEEEEEeCCCCCCCcccCCceEEEEEECC
Confidence 58999999999999999999999999876543 1 223333221 1223566655322211 223357889999999
Q ss_pred C---HHHHHHHHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEeCC
Q 024414 179 D---VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP 226 (268)
Q Consensus 179 D---id~~~~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~~~ 226 (268)
| +++++++|+++|+.+.. +.. .+..+.+|++|||||.|||++..+
T Consensus 75 d~~dvd~~~~~L~~~Gv~~~~-~~~--~~~~~s~yf~DPdG~~iEl~~~~~ 122 (157)
T cd08347 75 DDEELEAWKERLEALGLPVSG-IVD--RFYFKSLYFREPGGILFEIATDGP 122 (157)
T ss_pred CHHHHHHHHHHHHHCCCCccc-ccc--cccEEEEEEECCCCcEEEEEECCC
Confidence 8 89999999999997642 222 234578999999999999998764
No 38
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.70 E-value=1e-15 Score=119.18 Aligned_cols=118 Identities=25% Similarity=0.420 Sum_probs=86.3
Q ss_pred ceeeEEEEEeCCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCCCCceEEEEEeeccCC-CCCCCCCCeeEEEEEE
Q 024414 99 RRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGV-DKYDIGTGFGHFGIAV 177 (268)
Q Consensus 99 ~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~-~~~~~g~g~~hi~f~V 177 (268)
++|+||+|.|+|++++.+||+++|||++....+ ..+++..+. ....+.+...... .......++.|++|.|
T Consensus 1 ~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~------~~~~l~~~~--~~~~l~l~~~~~~~~~~~~~~~~~hi~f~v 72 (125)
T cd07255 1 TRIGAVTLRVADLERSLAFYQDVLGLEVLERTD------STAVLGTGG--KRPLLVLEEDPDAPPAPPGATGLYHFAILL 72 (125)
T ss_pred CEEEEEEEEECCHHHHHHHHHhccCcEEEEcCC------CEEEEecCC--CeEEEEEEeCCCCCcccCCCCcEEEEEEEC
Confidence 479999999999999999999999999986622 134554433 2334555443222 1223445788999999
Q ss_pred CC---HHHHHHHHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEeCCC
Q 024414 178 DD---VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT 227 (268)
Q Consensus 178 ~D---id~~~~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~~~~ 227 (268)
++ +++++++++++|+++..+ ... +..+.+|+.|||||.+||....+.
T Consensus 73 ~~~~~v~~~~~~l~~~g~~~~~~-~~~--~~~~~~~~~DPdG~~iEi~~~~~~ 122 (125)
T cd07255 73 PSRADLAAALRRLIELGIPLVGA-SDH--LVSEALYLSDPEGNGIEIYADRPR 122 (125)
T ss_pred CCHHHHHHHHHHHHHcCCceecc-ccc--cceeEEEEECCCCCEEEEEEecCc
Confidence 74 899999999999987543 222 334789999999999999987663
No 39
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.70 E-value=4.1e-16 Score=121.14 Aligned_cols=113 Identities=19% Similarity=0.229 Sum_probs=80.8
Q ss_pred eeeEEEEEeCCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCCCCceEEEEEee----ccCCCCCCCCCCeeEEEE
Q 024414 100 RMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTY----NYGVDKYDIGTGFGHFGI 175 (268)
Q Consensus 100 ~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~----~~~~~~~~~g~g~~hi~f 175 (268)
++.|+.|.|+|++++++||+++||+++....+ . .+.+..+ +.+.+.. .........+.+..|++|
T Consensus 2 ~~~~~~l~v~D~~~a~~FY~~~lG~~~~~~~~--~----~~~~~~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 70 (120)
T cd09011 2 KFKNPLLVVKDIEKSKKFYEKVLGLKVVMDFG--E----NVTFEGG-----FALQEGYSWLEGISKADIIEKSNNFELYF 70 (120)
T ss_pred EEEEEEEEECCHHHHHHHHHHhcCCEEeeccC--c----eEEEecc-----ceeccchhhhccCCcccccccCCceEEEE
Confidence 68999999999999999999999999864322 1 1112111 1121111 000111122344569999
Q ss_pred EECCHHHHHHHHHHcCC-eEeeCCcccCCCCeEEEEEECCCCCEEEEEEe
Q 024414 176 AVDDVAKTVELIKAKGG-KVTREPGPVKGGNTVIAFIEDPDGYKFELLER 224 (268)
Q Consensus 176 ~V~Did~~~~~L~~~G~-~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~ 224 (268)
.|+|+++++++|+++|+ ++..++...++| .+.++++|||||.|||.++
T Consensus 71 ~v~dvd~~~~~l~~~g~~~~~~~~~~~~~g-~r~~~~~DPdGn~iei~~~ 119 (120)
T cd09011 71 EEEDFDAFLDKLKRYDNIEYVHPIKEHPWG-QRVVRFYDPDKHIIEVGES 119 (120)
T ss_pred EehhhHHHHHHHHhcCCcEEecCcccCCCc-cEEEEEECCCCCEEEEecc
Confidence 99999999999999986 687787877765 5889999999999999875
No 40
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=99.70 E-value=3.8e-16 Score=123.82 Aligned_cols=115 Identities=21% Similarity=0.362 Sum_probs=82.7
Q ss_pred eeEEEEEeCCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCCCCceEEEEEeeccCCCCCCCCCCeeEEEEEECC-
Q 024414 101 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDD- 179 (268)
Q Consensus 101 l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~V~D- 179 (268)
|+||+|.|+|++++++||+++||+++....+ ..+++..+. ..+.+......+......++.|++|.|++
T Consensus 1 i~HV~l~V~Dl~~a~~FY~~~LG~~~~~~~~------~~~~~~~~~----~~l~l~~~~~~~~~~~~~~~~hiaf~v~~~ 70 (131)
T cd08363 1 INHMTFSVSNLDKSISFYKHVFMEKLLVLGE------KTAYFTIGG----TWLALNEEPDIPRNEIRQSYTHIAFTIEDS 70 (131)
T ss_pred CceEEEEECCHHHHHHHHHHhhCCEEeccCC------ccceEeeCc----eEEEEEccCCCCcCCcCccceEEEEEecHH
Confidence 6899999999999999999999999865321 123444432 23444332221111223477899999984
Q ss_pred -HHHHHHHHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEeCC
Q 024414 180 -VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP 226 (268)
Q Consensus 180 -id~~~~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~~~ 226 (268)
+++++++++++|+++..++....+ ..+.+|++|||||.|||.+...
T Consensus 71 dld~~~~~l~~~G~~~~~~~~~~~~-~~~~~~f~DPdG~~iEl~~~~~ 117 (131)
T cd08363 71 EFDAFYTRLKEAGVNILPGRKRDVR-DRKSIYFTDPDGHKLEVHTGTL 117 (131)
T ss_pred HHHHHHHHHHHcCCcccCCCccccC-cceEEEEECCCCCEEEEecCcH
Confidence 999999999999998655443333 3578999999999999997653
No 41
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=99.70 E-value=8.1e-16 Score=119.64 Aligned_cols=114 Identities=21% Similarity=0.314 Sum_probs=83.2
Q ss_pred cCceeeEEEEEeCCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCCCCceEEEEEeeccCCCCCCCCCCeeEEEEE
Q 024414 97 DKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIA 176 (268)
Q Consensus 97 ~~~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~ 176 (268)
.+.+|+||+|.|+|++++.+||+++||+++..+.+ ..+++...+......+.+... ...++.|++|.
T Consensus 3 ~i~~i~hv~l~v~dl~~a~~FY~~~lG~~~~~~~~------~~~~l~~~~~~~~~~~~l~~~-------~~~~~~h~af~ 69 (121)
T cd09013 3 DIAHLAHVELLTPKPEESLWFFTDVLGLEETGREG------QSVYLRAWGDYEHHSLKLTES-------PEAGLGHIAWR 69 (121)
T ss_pred CccEeeEEEEEeCCHHHHHHHHHhCcCCEEEeecC------CeEEEEeccCCCccEEEEeeC-------CCCceEEEEEE
Confidence 36799999999999999999999999999876532 135554433212233444321 12478899999
Q ss_pred EC---CHHHHHHHHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEeC
Q 024414 177 VD---DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 225 (268)
Q Consensus 177 V~---Did~~~~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~~ 225 (268)
|+ |+++++++++++|+++...+... +.+..+|++|||||.+|++...
T Consensus 70 v~~~~~v~~~~~~l~~~G~~~~~~~~~~--~~~~~~~~~DPdG~~iEl~~~~ 119 (121)
T cd09013 70 ASSPEALERRVAALEASGLGIGWIEGDP--GHGKAYRFRSPDGHPMELYWEV 119 (121)
T ss_pred cCCHHHHHHHHHHHHHcCCccccccCCC--CCcceEEEECCCCCEEEEEEec
Confidence 97 58899999999999874332222 2346789999999999998654
No 42
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.70 E-value=6.7e-16 Score=119.67 Aligned_cols=120 Identities=23% Similarity=0.306 Sum_probs=83.0
Q ss_pred eeeEEEEEeCCHHHHHHHHHhhcCCEEEEEecCCCC-ceeEEEEeeCCCCceEEEEEeeccCCCC--CCCCCCeeEEEEE
Q 024414 100 RMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEE-KYTNAFLGYGPEDSHFVIELTYNYGVDK--YDIGTGFGHFGIA 176 (268)
Q Consensus 100 ~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~-~~~~~~l~~g~~~~~~~lel~~~~~~~~--~~~g~g~~hi~f~ 176 (268)
+|+||+|.|.|++++++||+++|||++.......+. .....++..........+++........ .....++.|++|.
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~hi~f~ 80 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEWPDAGPKGRRGPGQIHHIAFS 80 (126)
T ss_pred CcccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEecCCCCCCCCCCCCcEEEEEEE
Confidence 579999999999999999999999998876543221 1122333322111223466654322211 1233467899999
Q ss_pred EC---CHHHHHHHHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEEE
Q 024414 177 VD---DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 222 (268)
Q Consensus 177 V~---Did~~~~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~ 222 (268)
|+ |+++++++++++|+++...+. . ++.+.+|++||+||.|||+
T Consensus 81 v~~~~~~~~~~~~~~~~g~~~~~~~~-~--~~~~~~~~~DP~G~~iE~~ 126 (126)
T cd08346 81 VPSEASLDAWRERLRAAGVPVSGVVD-H--FGERSIYFEDPDGLRLELT 126 (126)
T ss_pred cCCHHHHHHHHHHHHHcCCcccceEe-e--cceEEEEEECCCCCEEEeC
Confidence 98 479999999999998865332 2 3468899999999999984
No 43
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=99.70 E-value=3.5e-16 Score=118.32 Aligned_cols=113 Identities=28% Similarity=0.354 Sum_probs=82.0
Q ss_pred eeEEEEEeCCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCCCCceEEEEEeeccCCCC-CCCCCCeeEEEEEECC
Q 024414 101 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDK-YDIGTGFGHFGIAVDD 179 (268)
Q Consensus 101 l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~-~~~g~g~~hi~f~V~D 179 (268)
|+|++|.|+|++++++||+++||++........ ....++..++. ..+++........ ...+.+..|++|.|+|
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~---~~~~~~~~~~~---~~i~l~~~~~~~~~~~~~~~~~~~~~~v~d 74 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPFL---FPGAWLYAGDG---PQLHLIEEDPPDALPEGPGRDDHIAFRVDD 74 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCCC---CCceEEEeCCC---cEEEEEecCCCccccCCCcccceEEEEeCC
Confidence 689999999999999999999999977543322 12345555432 2344443222211 1234567899999999
Q ss_pred HHHHHHHHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEE
Q 024414 180 VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFEL 221 (268)
Q Consensus 180 id~~~~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl 221 (268)
+++++++++++|+++..++.. .. +.+.+++.||+|+.|||
T Consensus 75 ~~~~~~~l~~~g~~~~~~~~~-~~-~~~~~~~~DP~G~~iE~ 114 (114)
T cd07245 75 LDAFRARLKAAGVPYTESDVP-GD-GVRQLFVRDPDGNRIEL 114 (114)
T ss_pred HHHHHHHHHHcCCCcccccCC-CC-CccEEEEECCCCCEEeC
Confidence 999999999999998776544 23 35779999999999986
No 44
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.70 E-value=1.3e-15 Score=119.23 Aligned_cols=117 Identities=22% Similarity=0.361 Sum_probs=86.1
Q ss_pred eeeEEEEEeCCHHHHHHHHHhhc---CCEEEEEecCCCCceeEEEEeeCCCCceEEEEEeeccCCCC---CCCCCCeeEE
Q 024414 100 RMLHVVYRVGDLDRTIKFYTECL---GMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDK---YDIGTGFGHF 173 (268)
Q Consensus 100 ~l~HV~l~V~Dle~a~~FY~~vL---G~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~---~~~g~g~~hi 173 (268)
+|+||+|.|+|++++.+||+++| ||++..... . ...|... . ....+.+........ ...+.++.|+
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~--~---~~~~~~~-~--~~~~i~l~~~~~~~~~~~~~~~~g~~hi 72 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWE--D---GRSWRAG-D--GGTYLVLQQADGESAGRHDRRNPGLHHL 72 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeec--c---CceEEec-C--CceEEEEEecccCCCcccccCCcCeeEE
Confidence 58999999999999999999999 999876542 1 1233322 1 234566665333221 1244678899
Q ss_pred EEEECC---HHHHHHHHHHcCCeEeeCCccc--CCCCeEEEEEECCCCCEEEEEEe
Q 024414 174 GIAVDD---VAKTVELIKAKGGKVTREPGPV--KGGNTVIAFIEDPDGYKFELLER 224 (268)
Q Consensus 174 ~f~V~D---id~~~~~L~~~G~~i~~~p~~~--~~G~~~~~~~~DPdG~~iEl~e~ 224 (268)
+|.|+| +++++++++++|+.+...+... ..+..+.+|++|||||.+||+.+
T Consensus 73 a~~v~~~~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~DpdG~~ie~~~~ 128 (128)
T cd07242 73 AFRAPSREAVDELYARLAKRGAEILYAPREPYAGGPGYYALFFEDPDGIRLELVAP 128 (128)
T ss_pred EEEcCCHHHHHHHHHHHHHcCCeEecCCcccccCCCcEEEEEEECCCCcEEEEEeC
Confidence 999974 8999999999999988776542 23456889999999999999864
No 45
>PLN02300 lactoylglutathione lyase
Probab=99.69 E-value=9.6e-16 Score=137.25 Aligned_cols=149 Identities=50% Similarity=0.767 Sum_probs=112.0
Q ss_pred CCcccccccCcccccccccccccccccccccChhHHhhhcCceeeEEEEEeCCHHHHHHHHHhhcCCEEEEEecCCCCce
Q 024414 58 AAKPLRGDVNSTGVASSAGNAAQASTSAAHESALEWVKKDKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKY 137 (268)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~ 137 (268)
...+.+++||.+++... . .+..++.|+.|.|+|++++.+||+++|||++......++.+|
T Consensus 132 ~~~~~DPdG~~iEl~~~-~-------------------~~~~~~~~~~l~~~d~~~a~~Fy~~~lg~~~~~~~~~~~~~~ 191 (286)
T PLN02300 132 IAFVKDPDGYKFELIQR-G-------------------PTPEPLCQVMLRVGDLDRSIKFYEKAFGMKLLRKRDNPEYKY 191 (286)
T ss_pred EEEEECCCCCEEEEEeC-C-------------------CCCCcceeEEEEeCCHHHHHHHHHhccCCEEEeeecccccce
Confidence 34567788888876532 0 112356788899999999999999999999986555445556
Q ss_pred eEEEEeeCCCCceEEEEEeeccCCCCCCCCCCeeEEEEEECCHHHHHHHHHHcCCeEeeCCcccCCCCeEEEEEECCCCC
Q 024414 138 TNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGY 217 (268)
Q Consensus 138 ~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~V~Did~~~~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~ 217 (268)
..+++.+++......+++........+..+++.+|++|.|+|+++++++++++|+++..+|...++.+.+.++++||||+
T Consensus 192 ~~~~~~~~~~~~~~~lel~~~~~~~~~~~g~~~~~i~~~v~di~~~~~~~~~~G~~v~~~p~~~p~~~~~~~~~~DPdG~ 271 (286)
T PLN02300 192 TIAMMGYGPEDKTTVLELTYNYGVTEYTKGNAYAQIAIGTDDVYKTAEAIKLVGGKITREPGPLPGINTKITACLDPDGW 271 (286)
T ss_pred EEEEEecCCCCCccEEEEeecCCCCccccCCceeEEEEecCCHHHHHHHHHHcCCeEecCCccCCCCceEEEEEECCCCC
Confidence 66766554332333466655444334455688999999999999999999999999999888887644578899999999
Q ss_pred EEEEEEeCC
Q 024414 218 KFELLERGP 226 (268)
Q Consensus 218 ~iEl~e~~~ 226 (268)
.++|++...
T Consensus 272 ~i~~~~~~~ 280 (286)
T PLN02300 272 KTVFVDNID 280 (286)
T ss_pred EEEEEccch
Confidence 999998754
No 46
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.69 E-value=6.5e-16 Score=120.22 Aligned_cols=119 Identities=33% Similarity=0.547 Sum_probs=86.1
Q ss_pred eeEEEEEeCCHHHHHHHHHhhcCCEEEEEecCC-CCceeEEEEeeCCCCceEEEEEeeccCCCC------CCCCCCeeEE
Q 024414 101 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIP-EEKYTNAFLGYGPEDSHFVIELTYNYGVDK------YDIGTGFGHF 173 (268)
Q Consensus 101 l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~-~~~~~~~~l~~g~~~~~~~lel~~~~~~~~------~~~g~g~~hi 173 (268)
|+||+|.|+|++++.+||+++|||+........ ++....+++..+ ...+++..+..... ...+.|..|+
T Consensus 1 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~----~~~l~l~~~~~~~~~~~~~~~~~~~g~~h~ 76 (128)
T cd07249 1 IDHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLGLG----NVQIELIEPLDDDSPIAKFLEKRGEGLHHI 76 (128)
T ss_pred CcEEEEEeCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEEcC----CEEEEEEEECCCCCcHHHHHhcCCCceEEE
Confidence 589999999999999999999999987655432 233445666543 24566654322111 1245788999
Q ss_pred EEEECCHHHHHHHHHHcCCeEeeCCcccCCCCeEEEEEECCC--CCEEEEEE
Q 024414 174 GIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPD--GYKFELLE 223 (268)
Q Consensus 174 ~f~V~Did~~~~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPd--G~~iEl~e 223 (268)
+|.|+|+++++++++++|+++..++.....++....++.||| |+.|||+|
T Consensus 77 ~f~v~d~~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~d~~~~~g~~iE~~~ 128 (128)
T cd07249 77 AFEVDDIDAALARLKAQGVRLLQEGPRIGAGGKRVAFLHPKDTGGVLIELVE 128 (128)
T ss_pred EEEeCCHHHHHHHHHHCCCeeeccCCCccCCCCEEEEEecCCCceEEEEecC
Confidence 999999999999999999999887764444444444444555 99999985
No 47
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.69 E-value=8.8e-16 Score=119.41 Aligned_cols=117 Identities=20% Similarity=0.273 Sum_probs=80.2
Q ss_pred eeEEEEEeCCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCCCCceEEEEEeec------cC--CCCCCCCCCeeE
Q 024414 101 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYN------YG--VDKYDIGTGFGH 172 (268)
Q Consensus 101 l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~------~~--~~~~~~g~g~~h 172 (268)
+.|+.|.|+|++++++||+++|||+....... ..+ ..+..+ ...+.+..... .. ........+..|
T Consensus 1 ~~~~~l~v~D~~~s~~FY~~~lG~~~~~~~~~--~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (125)
T cd07264 1 FGYTIIYVEDVEKTLEFYERAFGFERRFLHES--GDY--GELETG--ETTLAFASHDLAESNLKGGFVKADPAQPPAGFE 74 (125)
T ss_pred CceEEEEEcCHHHHHHHHHHhhCCeEEeecCC--CcE--EEecCC--cEEEEEEcccccccccccCccCCccccCCCcEE
Confidence 46999999999999999999999998653221 111 112111 11111211110 00 011111223458
Q ss_pred EEEEECCHHHHHHHHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEe
Q 024414 173 FGIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 224 (268)
Q Consensus 173 i~f~V~Did~~~~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~ 224 (268)
++|.|+|+++++++++++|+++..++...++| .+.++++|||||.||++++
T Consensus 75 ~~~~v~di~~~~~~l~~~G~~~~~~~~~~~~g-~~~~~~~DPdG~~~~~~~~ 125 (125)
T cd07264 75 IAFVTDDVAAAFARAVEAGAVLVSEPKEKPWG-QTVAYVRDINGFLIELCSP 125 (125)
T ss_pred EEEEcCCHHHHHHHHHHcCCEeccCCccCCCC-cEEEEEECCCCCEEEEecC
Confidence 99999999999999999999998888777776 4778999999999999874
No 48
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=99.69 E-value=1.3e-15 Score=123.04 Aligned_cols=114 Identities=22% Similarity=0.410 Sum_probs=85.6
Q ss_pred ceeeEEEEEeCCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCCCCceEEEEEeeccCCCCCCCCCCeeEEEEEEC
Q 024414 99 RRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVD 178 (268)
Q Consensus 99 ~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~V~ 178 (268)
.+|+||.|.|+|++++++||+++|||++..... + ...|+..+.... .+.+... ...++.|++|.|+
T Consensus 3 ~~l~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~--~---~~~~l~~~~~~~--~~~l~~~-------~~~~~~hiaf~v~ 68 (144)
T cd07239 3 VKISHVVLNSPDVDKTVAFYEDVLGFRVSDWLG--D---QMAFLRCNSDHH--SIAIARG-------PHPSLNHVAFEMP 68 (144)
T ss_pred ceeeEEEEECCCHHHHHHHHHhcCCCEEEEeeC--C---eEEEEECCCCcc--eEEEccC-------CCCceEEEEEECC
Confidence 589999999999999999999999999865432 1 245666554332 3333321 1247889999999
Q ss_pred CHHHHH---HHHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEeCC
Q 024414 179 DVAKTV---ELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP 226 (268)
Q Consensus 179 Did~~~---~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~~~ 226 (268)
|++++. ++|+++|+++..++.....+..+.+||+||+||.|||++...
T Consensus 69 d~~~l~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~yf~DPdG~~iE~~~~~~ 119 (144)
T cd07239 69 SIDEVMRGIGRMIDKGIDILWGPGRHGPGDNTFAYFLDPGGFVIEYTSELE 119 (144)
T ss_pred CHHHHHHHHHHHHHcCCceeeCCcccCCCCCEEEEEECCCCcEEEeccCce
Confidence 977775 899999999876655444444567899999999999998764
No 49
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.69 E-value=1.5e-15 Score=118.01 Aligned_cols=116 Identities=21% Similarity=0.231 Sum_probs=83.5
Q ss_pred EEEeCCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCCCCceEEEEEeeccCCCC--CCCCCCeeEEEEEECCHHH
Q 024414 105 VYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDK--YDIGTGFGHFGIAVDDVAK 182 (268)
Q Consensus 105 ~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~--~~~g~g~~hi~f~V~Did~ 182 (268)
.|.|+|++++++||+++||+++......+++....+.+..++ ..+.+.......... .....+..|++|.|+|+++
T Consensus 4 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~d~d~ 81 (122)
T cd08355 4 TLRYRDAAAAIDWLTDAFGFEERLVVPDDDGGVAHAELRFGD--GGVMVGSVRDDYRASSARAGGAGTQGVYVVVDDVDA 81 (122)
T ss_pred EEEECCHHHHHHHHHHhcCCEEEEEEeCCCCcEEEEEEEECC--EEEEEecCCCcccccccccCCCceEEEEEEECCHHH
Confidence 489999999999999999999987654333333334455442 223332222111110 1233456799999999999
Q ss_pred HHHHHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEE
Q 024414 183 TVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 223 (268)
Q Consensus 183 ~~~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e 223 (268)
++++++++|+++..++...++| .+.++++|||||.|+|.+
T Consensus 82 ~~~~l~~~G~~v~~~~~~~~~g-~~~~~~~DPdG~~~~l~~ 121 (122)
T cd08355 82 HYERARAAGAEILREPTDTPYG-SREFTARDPEGNLWTFGT 121 (122)
T ss_pred HHHHHHHCCCEEeeCccccCCC-cEEEEEECCCCCEEEEec
Confidence 9999999999999888887776 578999999999999974
No 50
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.68 E-value=1.2e-15 Score=117.92 Aligned_cols=111 Identities=21% Similarity=0.230 Sum_probs=80.9
Q ss_pred EEEEEeCCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCCCCceEEEEEeeccCCC-----CCCCCCCeeEEEEEE
Q 024414 103 HVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVD-----KYDIGTGFGHFGIAV 177 (268)
Q Consensus 103 HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~-----~~~~g~g~~hi~f~V 177 (268)
+..|.|+|++++++||+++|||+.....+ ...++..++. .+.+.+....... ....+.++ |++|.|
T Consensus 4 ~~~l~v~D~~~s~~FY~~~lG~~~~~~~~------~~~~~~~~~~--~~~l~l~~~~~~~~~~~~~~~~~~~~-~~~~~v 74 (119)
T cd08359 4 YPVIVTDDLAETADFYVRHFGFTVVFDSD------WYVSLRSPDG--GVELAFMLPGHETVPAAQYQFQGQGL-ILNFEV 74 (119)
T ss_pred eeEEEECCHHHHHHHHHHhhCcEEEeccC------cEEEEecCCC--ceEEEEccCCCCCCcchhcccCCceE-EEEEEE
Confidence 56799999999999999999999876421 1233433322 2445444321111 11223344 899999
Q ss_pred CCHHHHHHHHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEE
Q 024414 178 DDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 223 (268)
Q Consensus 178 ~Did~~~~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e 223 (268)
+|++++++++.++|+++..++...++| .+.++++|||||.|||+|
T Consensus 75 ~did~~~~~l~~~G~~~~~~~~~~~~g-~~~~~~~DP~G~~ie~~~ 119 (119)
T cd08359 75 DDVDAEYERLKAEGLPIVLPLRDEPWG-QRHFIVRDPNGVLIDIVQ 119 (119)
T ss_pred CCHHHHHHHHHhcCCCeeeccccCCCc-ceEEEEECCCCCEEEEEC
Confidence 999999999999999988887777665 588999999999999986
No 51
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=99.68 E-value=1.8e-15 Score=116.10 Aligned_cols=112 Identities=27% Similarity=0.440 Sum_probs=85.6
Q ss_pred ceeeEEEEEeCCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCCCCceEEEEEeeccCCCCCCCCCCeeEEEEEEC
Q 024414 99 RRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVD 178 (268)
Q Consensus 99 ~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~V~ 178 (268)
++|+||+|.|+|++++++||+++|||++....+ ..+++..+.. ..+.+.+.... ..+..|++|.|+
T Consensus 1 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~------~~~~~~~~~~-~~~~~~~~~~~-------~~~~~h~~~~v~ 66 (117)
T cd07240 1 RRIAYAELEVPDLERALEFYTDVLGLTVLDRDA------GSVYLRCSED-DHHSLVLTEGD-------EPGVDALGFEVA 66 (117)
T ss_pred CceeEEEEecCCHHHHHHHHHhccCcEEEeecC------CeEEEecCCC-CcEEEEEEeCC-------CCCceeEEEEcC
Confidence 479999999999999999999999999886542 2356655422 22334443321 246789999998
Q ss_pred ---CHHHHHHHHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEeC
Q 024414 179 ---DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 225 (268)
Q Consensus 179 ---Did~~~~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~~ 225 (268)
++++++++++++|+++...+...++ +.+.+++.||+||.+|++...
T Consensus 67 ~~~~v~~~~~~l~~~g~~~~~~~~~~~~-~~~~~~~~DP~G~~ie~~~~~ 115 (117)
T cd07240 67 SEEDLEALAAHLEAAGVAPEEASDPEPG-VGRGLRFQDPDGHLLELFVEA 115 (117)
T ss_pred CHHHHHHHHHHHHHcCCceEEcCccCCC-CceEEEEECCCCCEEEEEEcc
Confidence 6899999999999999877654443 457899999999999999763
No 52
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=99.68 E-value=1.2e-15 Score=118.69 Aligned_cols=112 Identities=19% Similarity=0.257 Sum_probs=82.7
Q ss_pred eeeEEEEEeCCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCCCCceEEEEEeeccCCCCCCCCCCeeEEEEEEC-
Q 024414 100 RMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVD- 178 (268)
Q Consensus 100 ~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~V~- 178 (268)
+|.||+|.|+|+++|++||+++|||++..... . ..+++..++. .+.+.+.... ..++.|++|.++
T Consensus 2 ~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~~~---~--~~~~~~~~~~--~~~~~l~~~~-------~~~~~~~~f~v~~ 67 (120)
T cd07252 2 SLGYLGVESSDLDAWRRFATDVLGLQVGDRPE---D--GALYLRMDDR--AWRIAVHPGE-------ADDLAYAGWEVAD 67 (120)
T ss_pred cccEEEEEeCCHHHHHHHHHhccCceeccCCC---C--CeEEEEccCC--ceEEEEEeCC-------CCceeEEEEEECC
Confidence 68999999999999999999999998764321 1 2455555433 3344443321 246779999997
Q ss_pred --CHHHHHHHHHHcCCeEeeCCccc--CCCCeEEEEEECCCCCEEEEEEeC
Q 024414 179 --DVAKTVELIKAKGGKVTREPGPV--KGGNTVIAFIEDPDGYKFELLERG 225 (268)
Q Consensus 179 --Did~~~~~L~~~G~~i~~~p~~~--~~G~~~~~~~~DPdG~~iEl~e~~ 225 (268)
|+++++++|+++|+++...+... ..+..+.+|++|||||.|||+...
T Consensus 68 ~~dl~~~~~~l~~~Gv~~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 118 (120)
T cd07252 68 EAALDALAARLRAAGVAVEEGSAELAAERGVEGLIRFADPDGNRHELFWGP 118 (120)
T ss_pred HHHHHHHHHHHHHcCCeEEEcCHHHHhhCCCcEEEEEECCCCCEEEEEecc
Confidence 48999999999999987654322 234457899999999999998654
No 53
>PRK06724 hypothetical protein; Provisional
Probab=99.67 E-value=1.8e-15 Score=119.79 Aligned_cols=114 Identities=18% Similarity=0.236 Sum_probs=79.3
Q ss_pred hcCceeeEEEEEeCCHHHHHHHHHhhc---CCEEEEEecCCCCceeEEEEeeCCCCceEEEEEeeccCCCCCCCCCCeeE
Q 024414 96 KDKRRMLHVVYRVGDLDRTIKFYTECL---GMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGH 172 (268)
Q Consensus 96 ~~~~~l~HV~l~V~Dle~a~~FY~~vL---G~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~h 172 (268)
+|..+|+||+|.|+|++++++||+++| |++..... .+ ..+. ..+.+...... .....|..|
T Consensus 3 ~~~~~i~Hv~l~V~Dle~s~~FY~~vlg~lg~~~~~~~---------~~---~~g~--~~l~l~~~~~~--~~~~~g~~h 66 (128)
T PRK06724 3 TLRAGIHHIEFWVANLEESISFYDMLFSIIGWRKLNEV---------AY---STGE--SEIYFKEVDEE--IVRTLGPRH 66 (128)
T ss_pred ccCcccCEEEEEeCCHHHHHHHHHHHHhhCCcEEeeeE---------ee---eCCC--eeEEEecCCcc--ccCCCCcee
Confidence 367789999999999999999999966 66643211 11 1111 11222111110 112346789
Q ss_pred EEEEE---CCHHHHHHHHHHcCCeEeeCCcccCC--CCeEEEEEECCCCCEEEEEEeC
Q 024414 173 FGIAV---DDVAKTVELIKAKGGKVTREPGPVKG--GNTVIAFIEDPDGYKFELLERG 225 (268)
Q Consensus 173 i~f~V---~Did~~~~~L~~~G~~i~~~p~~~~~--G~~~~~~~~DPdG~~iEl~e~~ 225 (268)
+||.| +|+|+++++|+++|+++..+|...+. ++.+.++|+|||||.||++..+
T Consensus 67 ~af~v~~~~dvd~~~~~l~~~G~~~~~~p~~~~~~~~g~~~~~f~DPdG~~iEl~~~~ 124 (128)
T PRK06724 67 ICYQAINRKVVDEVAEFLSSTKIKIIRGPMEMNHYSEGYYTIDFYDPNGFIIEVAYTP 124 (128)
T ss_pred EEEecCChHHHHHHHHHHHHCCCEEecCCcccCCCCCCEEEEEEECCCCCEEEEEeCC
Confidence 99998 67999999999999999877765432 3457899999999999998663
No 54
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=99.67 E-value=6.8e-15 Score=135.57 Aligned_cols=157 Identities=24% Similarity=0.375 Sum_probs=110.7
Q ss_pred eeeEEEEEeCCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCCCCceEEEEEeeccCCCC----C--CCCCCeeEE
Q 024414 100 RMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDK----Y--DIGTGFGHF 173 (268)
Q Consensus 100 ~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~----~--~~g~g~~hi 173 (268)
+++||.|.|+|++++++||.+.|||+........... ..+.+..| .+.+++..+..... + .+++|+.|+
T Consensus 2 ~i~hi~~~V~D~~~a~~~y~~~LGf~~~~~~~~~~~~-~~~~~~~G----~~~l~L~~~~~~~s~~~~~~~~hg~gv~~i 76 (353)
T TIGR01263 2 GFDFVEFYVGDAKQAAYYYFTRFGFEKVAKETGHREK-ASHVLRQG----QINFVLTAPYSSDSPAADFAAKHGDGVKDV 76 (353)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCcEEEEeecCCce-eEEEEEeC----CEEEEEecCCCCCchHHHHHHhCCCceEEE
Confidence 6899999999999999999999999998763222221 22333333 35566665432221 1 267899999
Q ss_pred EEEECCHHHHHHHHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEeCC---------------------C----C
Q 024414 174 GIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP---------------------T----P 228 (268)
Q Consensus 174 ~f~V~Did~~~~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~~~---------------------~----~ 228 (268)
||.|+|++++++++.++|+++..+|.....|.....-+..+.|..+.|+++.. . -
T Consensus 77 af~V~Dv~~a~~~l~~~Ga~~v~~p~~~~~g~~~~~~i~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (353)
T TIGR01263 77 AFRVDDAAAAFEAAVERGAEPVQAPVELDEGAVTLATIKGIGDVVHTLVDRGGYKGSFYPGFFESLLDAALHEPPPGVGL 156 (353)
T ss_pred EEEECCHHHHHHHHHHCCCEeccCCccCCCCeEEEEEEECcCCCEEEEEcCCCCCCCCCCCccccccccccccCCCCCCe
Confidence 99999999999999999999987765431123333334455555555554321 0 1
Q ss_pred CCceeEEEEcC--CHHHHHHHHHHhcCCeEeeeec
Q 024414 229 EPLCQVMLRVG--DLDRSINFYEQAFGMELLRKRD 261 (268)
Q Consensus 229 ~~l~~v~L~v~--d~~~s~~FY~~vlG~~~~~~~~ 261 (268)
..++|+++.|. |++++++||+++|||+.....+
T Consensus 157 ~~iDHv~i~V~~~dl~~~~~fY~~~lGf~~~~~~~ 191 (353)
T TIGR01263 157 IAIDHLVGNVYRGQMEPWAEFYEKIFGFREIRSFD 191 (353)
T ss_pred EEeeeeEcccCCccHHHHHHHHHHHhCCceeeEEE
Confidence 24899999998 9999999999999999876554
No 55
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=99.67 E-value=4.6e-15 Score=117.19 Aligned_cols=121 Identities=27% Similarity=0.433 Sum_probs=85.4
Q ss_pred eeeEEEEEeCCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCCCCceEEEEEeeccCCCCCCCCCCeeEEEEEECC
Q 024414 100 RMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDD 179 (268)
Q Consensus 100 ~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~V~D 179 (268)
+|+||+|.|+|++++++||+++|||++....+. . ...++..+.. ....+.+.............++.|++|.|+|
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~--~--~~~~~~~~~~-~~~~l~l~~~~~~~~~~~~~~~~h~~f~v~~ 75 (134)
T cd08348 1 RLSHVVLYVRDLEAMVRFYRDVLGFTVTDRGPL--G--GLVFLSRDPD-EHHQIALITGRPAAPPPGPAGLNHIAFEVDS 75 (134)
T ss_pred CeeEEEEEecCHHHHHHHHHHhcCCEEEeeccC--C--cEEEEEecCC-CceEEEEEecCCCCCCCCCCCceEEEEEeCC
Confidence 589999999999999999999999998765432 1 2345554411 1234444443222111234578899999997
Q ss_pred HH---HHHHHHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEeCCCC
Q 024414 180 VA---KTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPTP 228 (268)
Q Consensus 180 id---~~~~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~~~~~ 228 (268)
++ +++++|.++|+++..... .+..+.++++||+||.|||++..+..
T Consensus 76 ~~~v~~~~~~l~~~G~~~~~~~~---~~~~~~~~~~DP~G~~ie~~~~~~~~ 124 (134)
T cd08348 76 LDDLRDLYERLRAAGITPVWPVD---HGNAWSIYFRDPDGNRLELFVDTPWY 124 (134)
T ss_pred HHHHHHHHHHHHHCCCCccccCC---CCceeEEEEECCCCCEEEEEEcCCCC
Confidence 55 588999999998765432 23357899999999999999877643
No 56
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.67 E-value=2.1e-15 Score=121.42 Aligned_cols=113 Identities=22% Similarity=0.283 Sum_probs=85.5
Q ss_pred eEEEEEeCCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCCCCceEEEEEeeccCCCCCCCCCCeeEEEEEECC--
Q 024414 102 LHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDD-- 179 (268)
Q Consensus 102 ~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~V~D-- 179 (268)
+||.|.|+|++++++||+++|||++...... ..+|+..........+.+.. ....++.|++|.|+|
T Consensus 1 ~Hv~l~V~Dle~s~~Fy~~vLG~~~~~~~~~-----~~~~l~~~~~~~~h~~~~~~-------~~~~gl~Hiaf~v~~~~ 68 (141)
T cd07258 1 GHVVIGSENFEASRDSLVEDFGFRVSDLIED-----RIVFMRCHPNPFHHTFAVGP-------ASSSHFHHVNFMVTDID 68 (141)
T ss_pred CcEEEecCCHHHHHHHHHhcCCCEeeeeeCC-----EEEEEEcCCCCCcceeeecc-------CCCCceEEEEEECCCHH
Confidence 5999999999999999999999998765321 35667644322222333221 124589999999986
Q ss_pred -HHHHHHHHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEeCC
Q 024414 180 -VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP 226 (268)
Q Consensus 180 -id~~~~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~~~ 226 (268)
+++++++|+++|+++..+|...+.++.+.+|++||+|+.|||.....
T Consensus 69 ~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iE~~~~~~ 116 (141)
T cd07258 69 DIGKALYRIKAHDVKVVFGPGRHPPSDSIFFYFLDPDGITVEYSFGME 116 (141)
T ss_pred HHHHHHHHHHHCCCcEEeCCceECCCCCEEEEEECCCCCEEEEEeCcc
Confidence 45779999999999887777666566788999999999999987654
No 57
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.67 E-value=6e-15 Score=113.92 Aligned_cols=116 Identities=22% Similarity=0.229 Sum_probs=84.9
Q ss_pred EEEEeCCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCCCCceEEEEEeeccCC--CCCCCCCCeeEEEEEECCHH
Q 024414 104 VVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGV--DKYDIGTGFGHFGIAVDDVA 181 (268)
Q Consensus 104 V~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~--~~~~~g~g~~hi~f~V~Did 181 (268)
..|.|+|++++.+||+++||++.......+++......+..+. . .+.+...... .....+.+..|++|.|+|++
T Consensus 5 ~~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~--~--~~~l~~~~~~~~~~~~~~~~~~~~~~~v~d~~ 80 (122)
T cd07246 5 PYLIVRDAAAAIDFYKKAFGAEELERMPDDDGRVMHAELRIGD--S--VLMLADEFPEHGSPASWGGTPVSLHLYVEDVD 80 (122)
T ss_pred EEEEECCHHHHHHHHHHhhCCEEEEEEeCCCCCEEEEEEEECC--E--EEEEecCCcccCCCCCCCCceEEEEEEeCCHH
Confidence 3488999999999999999999987765444433334444443 1 3444432111 01123345679999999999
Q ss_pred HHHHHHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEe
Q 024414 182 KTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 224 (268)
Q Consensus 182 ~~~~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~ 224 (268)
++++++.++|+++..++...++| .+.++++|||||.|+|.+.
T Consensus 81 ~~~~~l~~~G~~~~~~~~~~~~g-~~~~~~~DP~G~~~~l~~~ 122 (122)
T cd07246 81 ATFARAVAAGATSVMPPADQFWG-DRYGGVRDPFGHRWWIATH 122 (122)
T ss_pred HHHHHHHHCCCeEecCccccccc-ceEEEEECCCCCEEEEecC
Confidence 99999999999998888766665 5889999999999999863
No 58
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=99.66 E-value=4.7e-15 Score=114.59 Aligned_cols=114 Identities=25% Similarity=0.333 Sum_probs=82.7
Q ss_pred CceeeEEEEEeCCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCCCCceEEEEEeeccCCCCCCCCCCeeEEEEEE
Q 024414 98 KRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAV 177 (268)
Q Consensus 98 ~~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~V 177 (268)
+.+|+||.|.|+|++++++||+++|||+...... + .+++..+.. ....+.+... ..+++.|++|.|
T Consensus 1 ~~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~----~--~~~~~~~~~-~~~~~~~~~~-------~~~~~~~~~~~v 66 (120)
T cd08362 1 VTALRGVGLGVPDLAAAAAFYREVWGLSVVAEDD----G--IVYLRATGS-EHHILRLRRS-------DRNRLDVVSFSV 66 (120)
T ss_pred CceeeEEEEecCCHHHHHHHHHhCcCcEEEEecC----C--EEEEECCCC-ccEEEEeccC-------CCCCCceEEEEe
Confidence 3689999999999999999999999999865432 1 344543322 2223333221 123567999999
Q ss_pred C---CHHHHHHHHHHcCCeEeeCCcccC-CCCeEEEEEECCCCCEEEEEEeC
Q 024414 178 D---DVAKTVELIKAKGGKVTREPGPVK-GGNTVIAFIEDPDGYKFELLERG 225 (268)
Q Consensus 178 ~---Did~~~~~L~~~G~~i~~~p~~~~-~G~~~~~~~~DPdG~~iEl~e~~ 225 (268)
+ ++++++++++++|+++..++.... .++.+.+++.||+||.|||+...
T Consensus 67 ~~~~~l~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~~ 118 (120)
T cd08362 67 ASRADVDALARQVAARGGTVLSEPGATDDPGGGYGFRFFDPDGRLIEFSADV 118 (120)
T ss_pred CCHHHHHHHHHHHHHcCCceecCCcccCCCCCceEEEEECCCCCEEEEEecc
Confidence 4 689999999999999876654322 22357899999999999998753
No 59
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.65 E-value=6.2e-15 Score=113.54 Aligned_cols=110 Identities=22% Similarity=0.317 Sum_probs=80.2
Q ss_pred CceeeEEEEEeCCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCCCCceEEEEEeeccCCCCCCCCCCeeEEEEEE
Q 024414 98 KRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAV 177 (268)
Q Consensus 98 ~~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~V 177 (268)
+.+|+||.|.|+|++++++||++ |||+...... ..+++..+.... ..+..... ..+++.|++|.|
T Consensus 1 ~~~l~hv~l~v~Dl~~s~~FY~~-lGl~~~~~~~------~~~~~~~~~~~~-~~~~~~~~-------~~~~~~~~af~v 65 (113)
T cd07267 1 LTDIAHVRFEHPDLDKAERFLTD-FGLEVAARTD------DELYYRGYGTDP-FVYVARKG-------EKARFVGAAFEA 65 (113)
T ss_pred CcEEEEEEEccCCHHHHHHHHHH-cCCEEEEecC------CeEEEecCCCcc-EEEEcccC-------CcCcccEEEEEE
Confidence 46899999999999999999999 9999865422 134554432222 22222111 124778999999
Q ss_pred CCHHHHHHHHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEe
Q 024414 178 DDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 224 (268)
Q Consensus 178 ~Did~~~~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~ 224 (268)
+|.+++.+.++++|+.+...+. .+++ .+.++|.|||||.|||+..
T Consensus 66 ~~~~~~~~~~~~~g~~~~~~~~-~~~~-~~~~~~~DPdG~~iEl~~~ 110 (113)
T cd07267 66 ASRADLEKAAALPGASVIDDLE-APGG-GKRVTLTDPDGFPVELVYG 110 (113)
T ss_pred CCHHHHHHHHHcCCCeeecCCC-CCCC-ceEEEEECCCCCEEEEEec
Confidence 9999999999999998765432 3443 5789999999999999864
No 60
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.65 E-value=4.6e-15 Score=133.51 Aligned_cols=156 Identities=17% Similarity=0.241 Sum_probs=102.2
Q ss_pred CCCcccccccCcccccccccccccccccccccChhHHhhh----cCceeeEEEEEeCCHHHHHHHHHhhcCCEEEEEecC
Q 024414 57 RAAKPLRGDVNSTGVASSAGNAAQASTSAAHESALEWVKK----DKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDI 132 (268)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~----~~~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~ 132 (268)
++-++.+++||..++.....+... .........|..+ ...+|+||+|.|+|++++++||+++|||++......
T Consensus 101 ~~~~~~DPdG~~iEl~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~Hi~l~V~Dl~~s~~FY~~~LG~~~~~~~~~ 177 (303)
T TIGR03211 101 RRVRFTLPSGHTMELYAEKEYVGE---LVGGLNPDPWPDPLRGVGARRLDHCLLYGEDVAENTRFFTEVLGFRLTEQVVL 177 (303)
T ss_pred eEEEEECCCCCEEEEEEccccccc---cccccCCcccccccCCcCceeEEEEeEEeCCHHHHHHHHHHhcCCEEEeeEEc
Confidence 567889999999988754222110 0011111112111 257899999999999999999999999998765433
Q ss_pred CCCce-eEEEEeeCCCCceEEEEEeeccCCCCCCCCCC-eeEEEEEECC---HHHHHHHHHHcCCeEeeCCcccCCCCeE
Q 024414 133 PEEKY-TNAFLGYGPEDSHFVIELTYNYGVDKYDIGTG-FGHFGIAVDD---VAKTVELIKAKGGKVTREPGPVKGGNTV 207 (268)
Q Consensus 133 ~~~~~-~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g-~~hi~f~V~D---id~~~~~L~~~G~~i~~~p~~~~~G~~~ 207 (268)
+.+.. ...|+..+...+. +.+... .+.| +.|+||.|+| +++++++|+++|+++..+|...+.+..+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~--~~~~~~-------~~~g~~~Hiaf~v~~~~~v~~~~~~l~~~G~~~~~~p~~~~~~~~~ 248 (303)
T TIGR03211 178 GDGKEQAAAWLSVSNKAHD--IAFVGD-------PEPGKLHHVSFFLDSWEDVLKAADVMSKNDVSIDIGPTRHGITRGQ 248 (303)
T ss_pred CCCcEEEEEEEEcCCCCcc--cceecC-------CCCCceEEEEEEcCCHHHHHHHHHHHHhCCCceeeCCcccCCCCce
Confidence 33222 2345544332211 222111 1234 8899999996 5567889999999988777655443457
Q ss_pred EEEEECCCCCEEEEEEe
Q 024414 208 IAFIEDPDGYKFELLER 224 (268)
Q Consensus 208 ~~~~~DPdG~~iEl~e~ 224 (268)
.+||+|||||.||++..
T Consensus 249 ~~y~~DPdG~~iEl~~~ 265 (303)
T TIGR03211 249 TIYFFDPSGNRNETFGG 265 (303)
T ss_pred EEEEECCCCCEEEEecC
Confidence 89999999999999843
No 61
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=99.65 E-value=5.1e-15 Score=112.15 Aligned_cols=108 Identities=26% Similarity=0.311 Sum_probs=77.1
Q ss_pred EEeCCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCCCCceEEEEEeeccCCCCCCCCCCeeEEEEEECCHHHHHH
Q 024414 106 YRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDVAKTVE 185 (268)
Q Consensus 106 l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~V~Did~~~~ 185 (268)
|.|+|++++++||+++|||++....+ ..+.+..+.....-...+.... .......+..|++|.|+|++++++
T Consensus 1 l~v~d~~~a~~FY~~~lg~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~dv~~~~~ 72 (108)
T PF12681_consen 1 LPVSDLEAAAAFYEDVLGFEVVFDDP------DYVDFSLGFRFHDGVIEFLQFP--DPPGPPGGGFHLCFEVEDVDALYE 72 (108)
T ss_dssp EEESSHHHHHHHHHHTTTSEEEEEET------SEEEEEETEEEEEEEEEEEEEE--SSSSSSSSEEEEEEEESHHHHHHH
T ss_pred CccCCHHHHHHHHHHhcCCEEEEeCC------CeEEEEeccchhhhhHHHccCC--ccccCCCceeEEEEEEcCHHHHHH
Confidence 67999999999999999999988433 1233333311000012222211 122335577899999999999999
Q ss_pred HHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEEE
Q 024414 186 LIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 222 (268)
Q Consensus 186 ~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~ 222 (268)
+++++|+++..+|...++| .+.+++.|||||.|||+
T Consensus 73 ~l~~~G~~~~~~~~~~~~g-~~~~~~~DPdG~~ie~~ 108 (108)
T PF12681_consen 73 RLKELGAEIVTEPRDDPWG-QRSFYFIDPDGNRIEFC 108 (108)
T ss_dssp HHHHTTSEEEEEEEEETTS-EEEEEEE-TTS-EEEEE
T ss_pred HHHHCCCeEeeCCEEcCCC-eEEEEEECCCCCEEEeC
Confidence 9999999998888887665 68999999999999986
No 62
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=99.64 E-value=1.1e-14 Score=111.52 Aligned_cols=109 Identities=22% Similarity=0.263 Sum_probs=79.7
Q ss_pred EEEEeCCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCCCCceEEEEEeeccCCCCCCCCCCeeEEEEEECCHHHH
Q 024414 104 VVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDVAKT 183 (268)
Q Consensus 104 V~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~V~Did~~ 183 (268)
..|.|+|++++++||+++|||++.... + ...++..+.. ....+.+..... .+....|++|.|+|++++
T Consensus 4 ~~l~v~Dl~~s~~FY~~~lG~~~~~~~----~--~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~i~~~v~d~~~~ 71 (112)
T cd07238 4 PNLPVADPEAAAAFYADVLGLDVVMDH----G--WIATFASPQN-MTVQVSLATEGG-----TATVVPDLSIEVDDVDAA 71 (112)
T ss_pred ceEecCCHHHHHHHHHHhcCceEEEcC----C--ceEEEeecCC-CCcEEEEecCCC-----CCCCCCEEEEEeCCHHHH
Confidence 458999999999999999999986421 1 2334433322 223444443211 112345999999999999
Q ss_pred HHHHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEeC
Q 024414 184 VELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 225 (268)
Q Consensus 184 ~~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~~ 225 (268)
+++++++|+++..++...++| .+.+++.|||||.|+|++++
T Consensus 72 ~~~l~~~G~~~~~~~~~~~~g-~~~~~~~DP~Gn~i~~~~~~ 112 (112)
T cd07238 72 LARAVAAGFAIVYGPTDEPWG-VRRFFVRDPFGKLVNILTHR 112 (112)
T ss_pred HHHHHhcCCeEecCCccCCCc-eEEEEEECCCCCEEEEEEcC
Confidence 999999999998877766664 57899999999999999863
No 63
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.63 E-value=1.1e-14 Score=113.22 Aligned_cols=114 Identities=25% Similarity=0.301 Sum_probs=79.4
Q ss_pred eeEEEEEeCCHHHHHHHHHhh---cCCEEEEEecCCCCceeEEEEeeCCCCceEEEEEeeccCCCCCCCCCCeeEEEEEE
Q 024414 101 MLHVVYRVGDLDRTIKFYTEC---LGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAV 177 (268)
Q Consensus 101 l~HV~l~V~Dle~a~~FY~~v---LG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~V 177 (268)
|+||.|.|+|++++++||+++ ||++...... + . .+++..+... ..+.+......... ...+..|++|.|
T Consensus 1 l~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~~--~-~--~~~~~~~~~~--~~~~l~~~~~~~~~-~~~~~~hi~f~v 72 (123)
T cd07262 1 IDHVTLGVNDLERARAFYDAVLAPLGIKRVMEDG--P-G--AVGYGKGGGG--PDFWVTKPFDGEPA-TAGNGTHVAFAA 72 (123)
T ss_pred CcEEEEecCcHHHHHHHHHHHHhhcCceEEeecC--C-c--eeEeccCCCC--ceEEEeccccCCCC-CCCCceEEEEEC
Confidence 579999999999999999998 6998865431 1 1 2233322222 33444432221111 223346999999
Q ss_pred CC---HHHHHHHHHHcCCeEeeCCcccCC--CCeEEEEEECCCCCEEEEE
Q 024414 178 DD---VAKTVELIKAKGGKVTREPGPVKG--GNTVIAFIEDPDGYKFELL 222 (268)
Q Consensus 178 ~D---id~~~~~L~~~G~~i~~~p~~~~~--G~~~~~~~~DPdG~~iEl~ 222 (268)
+| ++++++++.++|+.+..+|...++ +..+.+|++|||||.|||+
T Consensus 73 ~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ie~~ 122 (123)
T cd07262 73 PSREAVDAFHAAALAAGGTDEGAPGLRPHYGPGYYAAYVRDPDGNKIEAV 122 (123)
T ss_pred CCHHHHHHHHHHHHHcCCccCCCCCCCCCCCCCeEEEEEECCCCCEEEEe
Confidence 87 788999999999998877766553 3446789999999999997
No 64
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.63 E-value=8e-15 Score=114.18 Aligned_cols=109 Identities=28% Similarity=0.469 Sum_probs=78.9
Q ss_pred eeeEEEEEeCCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCCCCceEEEEEeeccCCCCCCCCCCeeEEEEEE--
Q 024414 100 RMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAV-- 177 (268)
Q Consensus 100 ~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~V-- 177 (268)
+|+||.|.|+|++++.+||+++|||++....+ + ..++..+. ..+.+.+.... ....+..|++|.+
T Consensus 1 ~i~hv~l~v~d~~~~~~FY~~vLG~~~~~~~~--~----~~~~~~~~--~~~~l~~~~~~-----~~~~~~~hi~f~v~~ 67 (121)
T cd07244 1 GINHITLAVSDLERSVAFYVDLLGFKLHVRWD--K----GAYLEAGD--LWLCLSVDANV-----GPAKDYTHYAFSVSE 67 (121)
T ss_pred CcceEEEEECCHHHHHHHHHHhcCCEEEEecC--C----ceEEecCC--EEEEEecCCCC-----CCCCCeeeEEEEeCH
Confidence 58999999999999999999999999875432 1 23444332 22223222111 1235677999998
Q ss_pred CCHHHHHHHHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEeC
Q 024414 178 DDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 225 (268)
Q Consensus 178 ~Did~~~~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~~ 225 (268)
+|+++++++++++|+++..++.. ..+.+||.|||||.|||+...
T Consensus 68 ~dl~~~~~~l~~~G~~~~~~~~~----~~~~~~f~DPdG~~ie~~~~~ 111 (121)
T cd07244 68 EDFASLKEKLRQAGVKEWKENTS----EGDSFYFLDPDGHKLELHVGS 111 (121)
T ss_pred HHHHHHHHHHHHcCCcccCCCCC----CccEEEEECCCCCEEEEEeCC
Confidence 57999999999999987654332 136799999999999999654
No 65
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.63 E-value=1.2e-14 Score=112.37 Aligned_cols=114 Identities=27% Similarity=0.396 Sum_probs=80.8
Q ss_pred eeEEEEEeCCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCCCCceEEEEEeeccCCC------CCCCCCCeeEEE
Q 024414 101 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVD------KYDIGTGFGHFG 174 (268)
Q Consensus 101 l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~------~~~~g~g~~hi~ 174 (268)
|.||+|.|.|++++++||+++|||++..+. ++ ..+++..++. . .+.+....... ......+..|++
T Consensus 1 ~~~~~l~v~d~~~s~~Fy~~~lG~~~~~~~---~~--~~~~l~~~~~-~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (122)
T cd08354 1 ILETALYVDDLEAAEAFYEDVLGLELMLKE---DR--RLAFFWVGGR-G--MLLLFDPGATSTPGGEIPPHGGSGPGHFA 72 (122)
T ss_pred CeEEEEEeCCHHHHHHHHHhccCCEEeecC---CC--ceEEEEcCCC-c--EEEEEecCCcccccCCCCCCCCCCccEEE
Confidence 468999999999999999999999987641 11 2355555543 2 23333321110 111234778999
Q ss_pred EEEC--CHHHHHHHHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEe
Q 024414 175 IAVD--DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 224 (268)
Q Consensus 175 f~V~--Did~~~~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~ 224 (268)
|.++ |++++++++.++|+++...+. . .++.+.+++.|||||.||++++
T Consensus 73 ~~v~~~dl~~~~~~l~~~g~~~~~~~~-~-~~~~~~~~~~DP~G~~ie~~~~ 122 (122)
T cd08354 73 FAIPAEELAEWEAHLEAKGVAIESEVQ-W-PRGGRSLYFRDPDGNLLELATP 122 (122)
T ss_pred EEcCHHHHHHHHHHHHhcCCceecccc-C-CCCeeEEEEECCCCCEEEEecC
Confidence 9984 799999999999998866543 2 2345789999999999999864
No 66
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.63 E-value=1.2e-14 Score=130.00 Aligned_cols=158 Identities=20% Similarity=0.275 Sum_probs=103.4
Q ss_pred cCCCcccccccCcccccccccccccccccccccChhHHhhhcCceeeEEEEEeCCHHHHHHHHHhhcCCEEEEEecCCC-
Q 024414 56 LRAAKPLRGDVNSTGVASSAGNAAQASTSAAHESALEWVKKDKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPE- 134 (268)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~- 134 (268)
.++..+.+++||.+++-+..... .......+.....+ .....+|+||+|.|+|++++.+||+++|||++......+.
T Consensus 100 ~~~~~f~DPdGn~lEl~~~~~~~-~~~~~~~~~~~~~~-~~~~~~l~Hv~l~v~Dle~s~~FY~~~LGf~~~~~~~~~~~ 177 (286)
T TIGR03213 100 LGLIKFTDPGGNPLEIYYGAVED-FEKPFVSPRAVSGF-VTGDQGLGHIVLRVPDVDAALAFYTEVLGFQLSDVIDLPAG 177 (286)
T ss_pred eEEEEEECCCCCEEEEEEccccc-CCCCCCCCCCCCcc-ccCCccccEEEEEcCCHHHHHHHHHHccCCeEEEeEcccCC
Confidence 34678899999999875431110 00000000000012 2336799999999999999999999999999876532211
Q ss_pred -C-ceeEEEEeeCCCCceEEEEEeeccCCCCCCCCCCeeEEEEEECCHHH---HHHHHHHcCCeEeeCCcccCCCCeEEE
Q 024414 135 -E-KYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDVAK---TVELIKAKGGKVTREPGPVKGGNTVIA 209 (268)
Q Consensus 135 -~-~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~V~Did~---~~~~L~~~G~~i~~~p~~~~~G~~~~~ 209 (268)
+ .+..+|+..++..+. +.+... ....++.|++|.|+|+++ ++++|+++|+ ....+...+.+..+.+
T Consensus 178 ~g~~~~~~~l~~~~~~~~--~~l~~~------~~~~~~~Hiaf~v~d~~~v~~~~~~l~~~G~-~~~~~~r~~~~~~~~~ 248 (286)
T TIGR03213 178 PGVTVRPYFLHCNERHHS--LAFAAG------PSEKRLNHLMLEVDTLDDVGLALDRVDADGI-VASTLGRHTNDHMVSF 248 (286)
T ss_pred CCCcceEEEEEECCCcce--EEEecC------CCCCceEEEEEEcCCHHHHHHHHHHHHHCCC-EEecCCcCCCCCeEEE
Confidence 1 123566665543332 333221 124578899999998776 8999999999 5445554444567889
Q ss_pred EEECCCCCEEEEEEe
Q 024414 210 FIEDPDGYKFELLER 224 (268)
Q Consensus 210 ~~~DPdG~~iEl~e~ 224 (268)
|++||+|+.||+...
T Consensus 249 y~~DP~G~~iE~~~~ 263 (286)
T TIGR03213 249 YVATPSGWLVEYGWG 263 (286)
T ss_pred EEECCCCcEEEeecC
Confidence 999999999999863
No 67
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.62 E-value=1.1e-14 Score=111.37 Aligned_cols=109 Identities=25% Similarity=0.411 Sum_probs=77.4
Q ss_pred EEEEEeCCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCCCCceEEEEEeeccCCCCCCCCCCeeEEEEEEC--CH
Q 024414 103 HVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVD--DV 180 (268)
Q Consensus 103 HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~V~--Di 180 (268)
||.|.|+|++++++||+++||++...+.+ ...++..+. ..+.+....... ..+.+..|++|.|+ |+
T Consensus 1 Hv~l~v~d~~~s~~Fy~~~lg~~~~~~~~------~~~~~~~~~----~~l~~~~~~~~~--~~~~~~~hiaf~v~~~d~ 68 (113)
T cd08345 1 HITLIVKDLNKSIAFYRDILGAELIYSSS------KEAYFELAG----LWICLMEEDSLQ--GPERTYTHIAFQIQSEEF 68 (113)
T ss_pred CeeEEECCHHHHHHHHHHhcCCeeeeccC------ceeEEEecC----eEEEeccCCCcC--CCCCCccEEEEEcCHHHH
Confidence 89999999999999999999999865432 123444331 234443322111 12346779999995 79
Q ss_pred HHHHHHHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEe
Q 024414 181 AKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 224 (268)
Q Consensus 181 d~~~~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~ 224 (268)
++++++++++|+++........ +..+.+|++|||||.||++..
T Consensus 69 ~~~~~~l~~~G~~~~~~~~~~~-~~~~~~~~~DPdG~~iEi~~~ 111 (113)
T cd08345 69 DEYTERLKALGVEMKPERPRVQ-GEGRSIYFYDPDGHLLELHAG 111 (113)
T ss_pred HHHHHHHHHcCCccCCCccccC-CCceEEEEECCCCCEEEEEeC
Confidence 9999999999999864432222 235789999999999999853
No 68
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.62 E-value=2.2e-14 Score=111.12 Aligned_cols=112 Identities=28% Similarity=0.437 Sum_probs=79.0
Q ss_pred eEEEEEeCCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCCCCceEEEEEeeccCCCCCCCCCCeeEEEEEECC--
Q 024414 102 LHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDD-- 179 (268)
Q Consensus 102 ~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~V~D-- 179 (268)
.||.|.|+|++++.+||+++||++.....+ . ...|. .... .+.+.+...... ..+++.|++|.|+|
T Consensus 3 ~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~----~-~~~~~-~~~~--~~~~~~~~~~~~----~~~~~~h~~f~v~~~~ 70 (120)
T cd07254 3 FHVALNVDDLEASIAFYSKLFGVEPTKVRD----D-YAKFL-LEDP--RLNFVLNERPGA----PGGGLNHLGVQVDSAE 70 (120)
T ss_pred EEEEEEeCCHHHHHHHHHHHhCCeEecccC----C-eeEEE-ecCC--ceEEEEecCCCC----CCCCeeEEEEEeCCHH
Confidence 599999999999999999999998765422 1 12232 2222 233333322111 11578899999987
Q ss_pred -HHHHHHHHHHcCCeEeeCCcccC-CCCeEEEEEECCCCCEEEEEEeC
Q 024414 180 -VAKTVELIKAKGGKVTREPGPVK-GGNTVIAFIEDPDGYKFELLERG 225 (268)
Q Consensus 180 -id~~~~~L~~~G~~i~~~p~~~~-~G~~~~~~~~DPdG~~iEl~e~~ 225 (268)
++++++++.++|+++..++.... .+..+.+|++||+||.|||+.+.
T Consensus 71 dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~ 118 (120)
T cd07254 71 EVAEAKARAEAAGLPTFKEEDTTCCYAVQDKVWVTDPDGNAWEVFVTL 118 (120)
T ss_pred HHHHHHHHHHHcCCeEEccCCcccccCCcceEEEECCCCCEEEEEEee
Confidence 78899999999999876654332 22357799999999999999754
No 69
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.61 E-value=1.4e-14 Score=112.54 Aligned_cols=113 Identities=25% Similarity=0.381 Sum_probs=75.3
Q ss_pred EEEEEeCCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCCCCceEEEEEeeccCC---C-C-CCCCCCeeEEE--E
Q 024414 103 HVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGV---D-K-YDIGTGFGHFG--I 175 (268)
Q Consensus 103 HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~---~-~-~~~g~g~~hi~--f 175 (268)
||+|.|+|++++++||+++||+++..... . .+.+..+ +..+.+.+...... . . .....+..|++ |
T Consensus 2 Hi~l~v~Dl~~s~~FY~~~lG~~~~~~~~----~--~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 73 (125)
T cd08357 2 HLAIPVRDLEAARAFYGDVLGCKEGRSSE----T--WVDFDFF--GHQLVAHLSPNFNADASDNAVDGHPVPVPHFGLIL 73 (125)
T ss_pred eEEEEeCCHHHHHHHHHHhcCCEEeeccC----C--ccccccc--CcEEEEEeccCCCcccccCCCCCCccCCceEEEEE
Confidence 99999999999999999999999864321 0 1222222 22333433321100 0 0 11122445665 5
Q ss_pred EECCHHHHHHHHHHcCCeEeeCCccc---CCCCeEEEEEECCCCCEEEEEE
Q 024414 176 AVDDVAKTVELIKAKGGKVTREPGPV---KGGNTVIAFIEDPDGYKFELLE 223 (268)
Q Consensus 176 ~V~Did~~~~~L~~~G~~i~~~p~~~---~~G~~~~~~~~DPdG~~iEl~e 223 (268)
.++|+++++++|+++|+++..+|... ..++.+.+|++|||||.|||..
T Consensus 74 ~~~dv~~~~~~l~~~g~~~~~~p~~~~~~~~~~~~~~~~~DPdG~~iE~~~ 124 (125)
T cd08357 74 SEEEFDALAERLEAAGVEFLIEPYTRFEGQPGEQETFFLKDPSGNALEFKA 124 (125)
T ss_pred eHHHHHHHHHHHHHCCCcEecCcceeccCCcCceeEEEEECCCCCEEEEee
Confidence 66899999999999999998766532 2234688999999999999974
No 70
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=99.61 E-value=2.9e-14 Score=106.54 Aligned_cols=112 Identities=34% Similarity=0.428 Sum_probs=83.6
Q ss_pred EEEEEeCCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCCCCceEEEEEeeccCCCCCCCCCCeeEEEEEECCHHH
Q 024414 103 HVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDVAK 182 (268)
Q Consensus 103 HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~V~Did~ 182 (268)
|+++.|+|++++.+||+++||++....... ......++..+ ...+++...........+.+..|++|.|+|+++
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~--~~~~~~~~~~~----~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~ 74 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGN--GGAEFAVLGLG----GTRLELFEGDEPAPAPSGGGGVHLAFEVDDVDA 74 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeecc--CCEEEEEEecC----CceEEEecCCCCCCcccCCCeeEEEEECCCHHH
Confidence 899999999999999999999998876542 11234455443 235666553332222345678899999999999
Q ss_pred HHHHHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEE
Q 024414 183 TVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFEL 221 (268)
Q Consensus 183 ~~~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl 221 (268)
+++++.++|+.+...+... .++.+.+++.||+|+.|||
T Consensus 75 ~~~~l~~~g~~~~~~~~~~-~~~~~~~~~~Dp~G~~~~~ 112 (112)
T cd06587 75 AYERLKAAGVEVLGEPREE-PWGGRVAYFRDPDGNLIEL 112 (112)
T ss_pred HHHHHHHcCCcccCCCcCC-CCCcEEEEEECCCCcEEeC
Confidence 9999999999887665422 3346889999999999986
No 71
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=99.60 E-value=4.3e-14 Score=107.45 Aligned_cols=109 Identities=28% Similarity=0.363 Sum_probs=79.1
Q ss_pred EEEeCCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCCCCceEEEEEeeccCCCCCCCCCCeeEEEEEECCHHHHH
Q 024414 105 VYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDVAKTV 184 (268)
Q Consensus 105 ~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~V~Did~~~ 184 (268)
.|.|+|++++++||+++|||++..... .. ..+++..+ ...+.+......... ...+..|++|.|+|+++++
T Consensus 3 ~i~v~d~~~s~~FY~~~lg~~~~~~~~--~~--~~~~~~~~----~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 73 (112)
T cd08349 3 VLPVSDIERSLAFYRDVLGFEVDWEHP--EP--GYAFLSRG----GAQLMLSEHDGDEPV-PLGRGGSVYIEVEDVDALY 73 (112)
T ss_pred EEEECCHHHHHHHHHhccCeEEEEEcC--CC--cEEEEEeC----CEEEEEeccCCCCCC-CCCCcEEEEEEeCCHHHHH
Confidence 489999999999999999999876543 11 23444433 234555443222111 2345669999999999999
Q ss_pred HHHHHcCCe-EeeCCcccCCCCeEEEEEECCCCCEEEEEE
Q 024414 185 ELIKAKGGK-VTREPGPVKGGNTVIAFIEDPDGYKFELLE 223 (268)
Q Consensus 185 ~~L~~~G~~-i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e 223 (268)
++++++|++ +..++...++| .+.+++.||+|+.|||+|
T Consensus 74 ~~l~~~G~~~~~~~~~~~~~g-~~~~~~~DP~G~~ie~~~ 112 (112)
T cd08349 74 AELKAKGADLIVYPPEDQPWG-MREFAVRDPDGNLLRFGE 112 (112)
T ss_pred HHHHHcCCcceecCccCCCcc-cEEEEEECCCCCEEEecC
Confidence 999999998 55565555554 578999999999999985
No 72
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=99.60 E-value=2.3e-14 Score=111.28 Aligned_cols=113 Identities=18% Similarity=0.185 Sum_probs=77.2
Q ss_pred eeEEEEEeCCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCCCCceEEEEEeecc-----CCCCCCCCCCeeEEEE
Q 024414 101 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNY-----GVDKYDIGTGFGHFGI 175 (268)
Q Consensus 101 l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~-----~~~~~~~g~g~~hi~f 175 (268)
|+||+|.|+|+++|++||+. |||++....... ..+.+..++ + +.+.+.... .......+.+..|++|
T Consensus 1 ~~~i~l~V~D~~~a~~FY~~-LGf~~~~~~~~~----~~~~~~~~~-~--~~l~l~~~~~~~~~~~~~~~~~~~~~~l~~ 72 (122)
T cd07235 1 LDAVGIVVADMAKSLDFYRR-LGFDFPEEADDE----PHVEAVLPG-G--VRLAWDTVESIRSFTPGWTPTGGHRIALAF 72 (122)
T ss_pred CceEEEEeccHHHHHHHHHH-hCceecCCcCCC----CcEEEEeCC-C--EEEEEEcccceeeecCCCCCCCCCcEEEEE
Confidence 58999999999999999975 999976432211 122233322 1 223222110 0001112234558888
Q ss_pred EEC---CHHHHHHHHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEEE
Q 024414 176 AVD---DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 222 (268)
Q Consensus 176 ~V~---Did~~~~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~ 222 (268)
.+. |+++++++|+++|+++..++...++| .+.++++|||||.|||+
T Consensus 73 ~~~~~~dvd~~~~~l~~~G~~~~~~~~~~~~g-~~~~~~~DPdG~~iel~ 121 (122)
T cd07235 73 LCETPAEVDALYAELVGAGYPGHKEPWDAPWG-QRYAIVKDPDGNLVDLF 121 (122)
T ss_pred EcCCHHHHHHHHHHHHHCCCCcCCCCccCCCC-CEEEEEECCCCCEEEEe
Confidence 875 89999999999999988888777776 47789999999999997
No 73
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.60 E-value=3.1e-14 Score=127.48 Aligned_cols=158 Identities=21% Similarity=0.237 Sum_probs=104.0
Q ss_pred cCcCCCcccccccCcccccccccccccccccccccChhHHhhhcCceeeEEEEEeCCHHHHHHHHHhhcCCEEEEEecCC
Q 024414 54 FGLRAAKPLRGDVNSTGVASSAGNAAQASTSAAHESALEWVKKDKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIP 133 (268)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~ 133 (268)
.+.++.++.+++||.+++............. ...+..-...+|+||+|.|+|++++++||+++||+++......+
T Consensus 95 ~~~~~~~~~DPdG~~iEl~~~~~~~~~~~~~-----~~~~~~~~~~~i~Hv~l~v~dl~~a~~Fy~~~lG~~~~~~~~~~ 169 (294)
T TIGR02295 95 GQPEALRVEDPFGYPIEFYFEMEKVERLLRR-----YHRHRGVSPVRLDHFNVFVPDVQRALRFYKEELGFRVTEYTEDD 169 (294)
T ss_pred CCceEEEEECCCCCEEEEEEchhhccccccc-----ccccCCccceeeeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccC
Confidence 3446788999999999986532211110000 00000113678999999999999999999999999987654433
Q ss_pred CCceeEEEEeeCCCCceEEEEEeeccCCCCCCCCCCeeEEEEEECC---HHHHHHHHHHcCCe--EeeCCcccCCCCeEE
Q 024414 134 EEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDD---VAKTVELIKAKGGK--VTREPGPVKGGNTVI 208 (268)
Q Consensus 134 ~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~V~D---id~~~~~L~~~G~~--i~~~p~~~~~G~~~~ 208 (268)
.+.....|+..+...+ .+.+.. ..+.++.|+||.|+| +++++++|+++|++ +...|.....+..+.
T Consensus 170 ~~~~~~~~~~~~~~~~--~~~~~~-------~~~~~~~Hiaf~v~d~~~v~~~~~~l~~~G~~~~~~~~p~~~~~~~~~~ 240 (294)
T TIGR02295 170 EGNLAAAWLHRKGGVH--DIALTN-------GNGPRLHHIAYWVHDPLNIIKACDILASAGLSDSIERGPGRHGVSNAFF 240 (294)
T ss_pred CCcEEEEEEecCCCcC--ceEeec-------CCCCceeeEEEEcCCHHHHHHHHHHHHhCCCCcccccCCccCCCCcceE
Confidence 3333344554332222 223221 123688999999998 55678999999987 555555444444577
Q ss_pred EEEECCCCCEEEEEEeC
Q 024414 209 AFIEDPDGYKFELLERG 225 (268)
Q Consensus 209 ~~~~DPdG~~iEl~e~~ 225 (268)
+|++||+||.||+++..
T Consensus 241 ~y~~DP~G~~iEl~~~~ 257 (294)
T TIGR02295 241 LYLRDPDGHRIELYTGD 257 (294)
T ss_pred EEEECCCCCEEEEEecc
Confidence 99999999999998754
No 74
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.60 E-value=3.3e-14 Score=109.02 Aligned_cols=108 Identities=27% Similarity=0.367 Sum_probs=78.7
Q ss_pred EEEEeCCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCCCCceEEEEEeeccCCCC-CCCCCCeeEEEEEECC---
Q 024414 104 VVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDK-YDIGTGFGHFGIAVDD--- 179 (268)
Q Consensus 104 V~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~-~~~g~g~~hi~f~V~D--- 179 (268)
|.|.|+|++++++||+++||+++....+ .+ +.+..++ . ..+.+........ .....+..|++|.|++
T Consensus 2 ~~l~v~d~~~a~~FY~~~lg~~~~~~~~----~~--~~~~~~~-~--~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 72 (114)
T cd07261 2 VLLYVEDPAASAEFYSELLGREPVELSP----TF--ALFVLGS-G--VKLGLWSRHTVEPASDATGGGSELAFMVDDGAA 72 (114)
T ss_pred EEEEECCHHHHHHHHHHHcCCCccCCCC----ce--EEEEeCC-C--cEEEEeeccccCCCCCCCCCceEEEEEcCCHHH
Confidence 6799999999999999999999765321 12 2333322 1 3455554332211 1223467799999985
Q ss_pred HHHHHHHHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEEE
Q 024414 180 VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 222 (268)
Q Consensus 180 id~~~~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~ 222 (268)
++++++++.++|+++..++...++| +.++++|||||.|||+
T Consensus 73 ~~~~~~~~~~~g~~v~~~~~~~~~g--~~~~~~DPdGn~ie~~ 113 (114)
T cd07261 73 VDALYAEWQAKGVKIIQEPTEMDFG--YTFVALDPDGHRLRVF 113 (114)
T ss_pred HHHHHHHHHHCCCeEecCccccCCc--cEEEEECCCCCEEEee
Confidence 8899999999999998888777665 5789999999999997
No 75
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.58 E-value=5.5e-14 Score=107.94 Aligned_cols=108 Identities=22% Similarity=0.323 Sum_probs=73.9
Q ss_pred ceeeEEEEEeCCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCCCCceEEEEEeeccCCCCCCCCCCeeE--EEEE
Q 024414 99 RRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGH--FGIA 176 (268)
Q Consensus 99 ~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~h--i~f~ 176 (268)
.+|+||+|.|.|++++++||+ +|||++....+ ...+...+.. ...+.+.... ..++.| +.+.
T Consensus 1 ~~i~hv~l~v~d~~~s~~FY~-~lG~~~~~~~~------~~~~~~~~~~--~~~~~~~~~~-------~~~~~~~~~~~~ 64 (112)
T cd08344 1 HSIDHFALEVPDLEVARRFYE-AFGLDVREEGD------GLELRTAGND--HRWARLLEGA-------RKRLAYLSFGIF 64 (112)
T ss_pred CceeEEEEecCCHHHHHHHHH-HhCCcEEeecC------ceEEEecCCC--ceEEEeecCC-------CCceeeEEEEeE
Confidence 368999999999999999997 69999865421 1223322222 2223333211 123444 4555
Q ss_pred ECCHHHHHHHHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEeC
Q 024414 177 VDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 225 (268)
Q Consensus 177 V~Did~~~~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~~ 225 (268)
++|+++++++|+++|+++..++ .++ ..+.+||.|||||.|||....
T Consensus 65 ~~d~~~~~~~l~~~Gi~~~~~~--~~~-~~~~~~~~DP~Gn~iel~~~~ 110 (112)
T cd08344 65 EDDFAAFARHLEAAGVALAAAP--PGA-DPDGVWFRDPDGNLLQVKVAE 110 (112)
T ss_pred hhhHHHHHHHHHHcCCceecCC--CcC-CCCEEEEECCCCCEEEEecCC
Confidence 6899999999999999987654 222 235689999999999998543
No 76
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.58 E-value=4.2e-14 Score=110.39 Aligned_cols=113 Identities=24% Similarity=0.227 Sum_probs=77.8
Q ss_pred eeEEEEEeCCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCCCCceEEEEEeeccC-----CCC--CCCCCCeeEE
Q 024414 101 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYG-----VDK--YDIGTGFGHF 173 (268)
Q Consensus 101 l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~-----~~~--~~~g~g~~hi 173 (268)
+.+|.|.|+|++++++||++ |||+.......+. .+++..++ ...+.+..... ... ...+.+..|+
T Consensus 1 ~~~v~l~V~Dl~~s~~FY~~-lGf~~~~~~~~~~----~~~~~~~~---~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l 72 (124)
T cd09012 1 MIFINLPVKDLEKSTAFYTA-LGFEFNPQFSDEK----AACMVISD---NIFVMLLTEDFFQTFTPKPIADTKKSTEVLI 72 (124)
T ss_pred CEEEEeecCCHHHHHHHHHH-CCCEEccccCCCC----eEEEEECC---ceEEEEEcHHHHhhccCCCcccCCCCCeEEE
Confidence 35788999999999999987 9999775333222 12233332 13344433110 000 0123455699
Q ss_pred EEEEC---CHHHHHHHHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEE
Q 024414 174 GIAVD---DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 223 (268)
Q Consensus 174 ~f~V~---Did~~~~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e 223 (268)
+|.|+ |+++++++++++|+++..+|...++ .+.+|++|||||.|||+.
T Consensus 73 ~f~v~~~~~vd~~~~~l~~~G~~i~~~p~~~~~--~~~~~~~DPdG~~ie~~~ 123 (124)
T cd09012 73 SLSADSREEVDELVEKALAAGGKEFREPQDHGF--MYGRSFADLDGHLWEVLW 123 (124)
T ss_pred EEeCCCHHHHHHHHHHHHHCCCcccCCcccCCc--eEEEEEECCCCCEEEEEE
Confidence 99998 5889999999999999887776654 467899999999999985
No 77
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=99.58 E-value=5.4e-14 Score=110.10 Aligned_cols=121 Identities=29% Similarity=0.414 Sum_probs=88.6
Q ss_pred cccChhHHhhhcCceeeEEEEEeCCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCC-CCceEEEEEeeccCCCCC
Q 024414 86 AHESALEWVKKDKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGP-EDSHFVIELTYNYGVDKY 164 (268)
Q Consensus 86 ~~~g~~~~~~~~~~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~-~~~~~~lel~~~~~~~~~ 164 (268)
...+.+.|++ |.|+|++++++||.++|||+.....+..+..| ..+..+. ..... + ... ...
T Consensus 5 ~~~~~i~w~E----------i~~~D~~ra~~FY~~vFgW~~~~~~~~~~~~y--~~f~~~~~~~gG~-l--~~~---~~~ 66 (127)
T COG3324 5 GEKGTIVWFE----------LPVSDLERAKAFYEKVFGWTFEDYFDMGEMRY--AVFPADGAGAGGG-L--MAR---PGS 66 (127)
T ss_pred ccCCccEEEe----------eecCCHHHHHHHHHHhhCceecccccCCCceE--EEEECCCccccce-e--ccC---CcC
Confidence 3455667777 99999999999999999999887765543333 2232222 21222 1 111 111
Q ss_pred CCCCCeeEEEEEECCHHHHHHHHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEeC
Q 024414 165 DIGTGFGHFGIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 225 (268)
Q Consensus 165 ~~g~g~~hi~f~V~Did~~~~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~~ 225 (268)
..+.+.+++.|.|+|+|+..+++.++|++++.++.+.+++ ++.+.+.||+||.|.|+++.
T Consensus 67 ~p~~~~~~iy~~v~did~~l~rv~~~GG~V~~p~~~~p~~-G~~a~~~Dp~Gn~~~l~s~~ 126 (127)
T COG3324 67 PPGGGGWVIYFAVDDIDATLERVVAAGGKVLRPKTEFPGG-GRIAHFVDPEGNRFGLWSPA 126 (127)
T ss_pred CCCCCCEEEEEecCChHHHHHHHHhcCCeEEecccccCCc-eEEEEEECCCCCEEEEeecC
Confidence 1224556899999999999999999999999999999864 68899999999999999754
No 78
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=99.57 E-value=1e-13 Score=107.69 Aligned_cols=107 Identities=22% Similarity=0.199 Sum_probs=75.1
Q ss_pred EEEEeCCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCCCCceEEEEEeeccCCCCCCCCCCeeEEEEEECCHHHH
Q 024414 104 VVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDVAKT 183 (268)
Q Consensus 104 V~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~V~Did~~ 183 (268)
..|.|+|++++++||++ |||++....+. . .+++..++ ..+.+....... ......|++|.|+|++++
T Consensus 6 ~~l~v~Dl~~s~~FY~~-lG~~~~~~~~~---~--~~~~~~~~----~~l~l~~~~~~~---~~~~~~~~~~~v~dvd~~ 72 (120)
T cd08350 6 PNLPSRDLDATEAFYAR-LGFSVGYRQAA---G--YMILRRGD----LELHFFAHPDLD---PATSPFGCCLRLPDVAAL 72 (120)
T ss_pred ceeEcCCHHHHHHHHHH-cCCEEEecCCC---C--EEEEEcCC----EEEEEEecCcCC---CCCCcceEEEEeCCHHHH
Confidence 45899999999999999 99998754331 1 23343332 245554322111 112345899999999999
Q ss_pred HHHHHHcCCeEe-------eCCcccCCCCeEEEEEECCCCCEEEEEEe
Q 024414 184 VELIKAKGGKVT-------REPGPVKGGNTVIAFIEDPDGYKFELLER 224 (268)
Q Consensus 184 ~~~L~~~G~~i~-------~~p~~~~~G~~~~~~~~DPdG~~iEl~e~ 224 (268)
+++|+++|+++. .++...++| .+.++++|||||.|+|+|.
T Consensus 73 ~~~l~~~G~~~~~~~~~~~~~~~~~~~g-~~~~~~~DPdG~~ie~~~~ 119 (120)
T cd08350 73 HAEFRAAGLPETGSGIPRITPPEDQPWG-MREFALVDPDGNLLRFGQP 119 (120)
T ss_pred HHHHHHhCccccccCCCcccCCcCCCCc-eeEEEEECCCCCEEEeecC
Confidence 999999999743 233434444 6889999999999999974
No 79
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=99.56 E-value=4.3e-14 Score=108.49 Aligned_cols=95 Identities=29% Similarity=0.352 Sum_probs=78.1
Q ss_pred eEEEEEeCCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCCCCceEEEEEeeccCCCCC--CCCCCeeEEEEEECC
Q 024414 102 LHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKY--DIGTGFGHFGIAVDD 179 (268)
Q Consensus 102 ~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~--~~g~g~~hi~f~V~D 179 (268)
+||+|.|+|+++|++||+++||++.......+..+.+..++..+++. +.+|+.++...... ..+.|++||||.|+|
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~~~--~~iELi~p~~~~~~~~~~~~gi~Hia~~v~D 78 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGDGP--VQIELIQPLDGDSPLDRGGGGIHHIAFEVDD 78 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETTET--EEEEEEEESSTTCHHHHTSSEEEEEEEEESH
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCCCc--EEEEEEEeCCCCcccccCCCCEEEEEEEeCC
Confidence 69999999999999999999999987776666667777888777533 67888886554332 377899999999999
Q ss_pred HHHHHHHHHHcCCeEeeCC
Q 024414 180 VAKTVELIKAKGGKVTREP 198 (268)
Q Consensus 180 id~~~~~L~~~G~~i~~~p 198 (268)
++++.++|+++|+++..++
T Consensus 79 ~d~~~~~l~~~G~~~~~~~ 97 (109)
T PF13669_consen 79 LDAAIARLEAQGFRVLDEG 97 (109)
T ss_dssp HHHHHHHHHHTTECEEECE
T ss_pred HHHHHHHHHHCCCEEcccC
Confidence 9999999999999987654
No 80
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.50 E-value=5.5e-13 Score=102.89 Aligned_cols=103 Identities=23% Similarity=0.297 Sum_probs=71.7
Q ss_pred EEEeCCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCCCCceEEEEEeeccCCCCCCCCCCeeEEEEEECCHHHHH
Q 024414 105 VYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDVAKTV 184 (268)
Q Consensus 105 ~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~V~Did~~~ 184 (268)
.|.|+|++++++||++ |||++....+ ..+++..+. . .+.+..... ... .+..+++|.|+|+++++
T Consensus 6 ~l~v~Dl~~s~~FY~~-LGf~~~~~~~------~~~~l~~~~--~--~l~l~~~~~-~~~---~~~~~~~~~v~did~~~ 70 (113)
T cd08356 6 FIPAKDFAESKQFYQA-LGFELEWEND------NLAYFRLGN--C--AFYLQDYYV-KDW---AENSMLHLEVDDLEAYY 70 (113)
T ss_pred ccccccHHHHHHHHHH-hCCeeEecCC------CEEEEEcCC--E--EEEeecCCC-ccc---ccCCEEEEEECCHHHHH
Confidence 4889999999999988 9999986532 134555432 2 233322111 111 22347899999999999
Q ss_pred HHHHHcCCeEe-----eCCcccCCCCeEEEEEECCCCCEEEEEE
Q 024414 185 ELIKAKGGKVT-----REPGPVKGGNTVIAFIEDPDGYKFELLE 223 (268)
Q Consensus 185 ~~L~~~G~~i~-----~~p~~~~~G~~~~~~~~DPdG~~iEl~e 223 (268)
++|+++|+++. .++...++| .+.++++|||||.|+|.|
T Consensus 71 ~~l~~~G~~~~~~~~~~~~~~~~~g-~r~f~~~DPdGn~~~~~~ 113 (113)
T cd08356 71 EHIKALGLPKKFPGVKLPPITQPWW-GREFFLHDPSGVLWHIGQ 113 (113)
T ss_pred HHHHHcCCcccccceecCccccCCC-cEEEEEECCCccEEEeeC
Confidence 99999998743 233444454 589999999999999864
No 81
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.48 E-value=1.3e-12 Score=100.66 Aligned_cols=110 Identities=25% Similarity=0.338 Sum_probs=76.3
Q ss_pred EEEEeCCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCCCCceEEEEEeeccC------CCCCCCCCCeeEEEEEE
Q 024414 104 VVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYG------VDKYDIGTGFGHFGIAV 177 (268)
Q Consensus 104 V~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~------~~~~~~g~g~~hi~f~V 177 (268)
|.|.|+|++++.+||+++|||++.... .. ...++..+. ..+.+..... ......+.+..|++|.+
T Consensus 2 i~l~v~d~~~a~~FY~~~lg~~~~~~~---~~--~~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (121)
T cd07251 2 ITLGVADLARSRAFYEALLGWKPSADS---ND--GVAFFQLGG----LVLALFPREELAKDAGVPVPPPGFSGITLAHNV 72 (121)
T ss_pred eeEeeCCHHHHHHHHHHhcCceecccC---CC--ceEEEEcCC----eEEEEecchhhhhhcCCCCCCCCccceEEEEEc
Confidence 679999999999999999999987551 11 134444321 3455543211 11111222333566655
Q ss_pred ---CCHHHHHHHHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEE
Q 024414 178 ---DDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 223 (268)
Q Consensus 178 ---~Did~~~~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e 223 (268)
+|++++++++++.|+++..++...++| .+.++++||+||.|||..
T Consensus 73 ~~~~d~~~~~~~l~~~G~~~~~~~~~~~~g-~~~~~~~DP~Gn~iei~~ 120 (121)
T cd07251 73 RSEEEVDAVLARAAAAGATIVKPPQDVFWG-GYSGYFADPDGHLWEVAH 120 (121)
T ss_pred CCHHHHHHHHHHHHhCCCEEecCCccCCCC-ceEEEEECCCCCEEEEee
Confidence 579999999999999998777666654 688999999999999974
No 82
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=99.46 E-value=5.9e-12 Score=116.71 Aligned_cols=160 Identities=22% Similarity=0.317 Sum_probs=116.3
Q ss_pred eeEEEEEeCCHHHHHHHHHhhcCCEEEEEecCCCC--ceeEEEEeeCCCCceEEEEEeeccCC-----------------
Q 024414 101 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEE--KYTNAFLGYGPEDSHFVIELTYNYGV----------------- 161 (268)
Q Consensus 101 l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~--~~~~~~l~~g~~~~~~~lel~~~~~~----------------- 161 (268)
++||.++|.|.+++..||+..|||+.+.+.....+ ......++-| .+.+.+..+...
T Consensus 1 ~dhvef~v~da~~~~~~f~~~~GF~~~a~~~~~tg~~~~~s~~~r~g----~i~fv~~~~~~~~~~~~~~~~~~~~~~~~ 76 (398)
T PLN02875 1 FHHVEFWCGDATNTARRFSWGLGMPLVAKSDLTTGNTTYASYLLRSG----DLVFLFTAPYSPKIGAGDDDPASTAPHPS 76 (398)
T ss_pred CeEEEEEcCCHHHHHHHHHHhcCCCeEeecCCCCCCcceEEEEEEeC----CEEEEEeCCCCCccccccccccccccccc
Confidence 68999999999999999999999999876653222 2223334433 234444433111
Q ss_pred --CC----C--CCCCCeeEEEEEECCHHHHHHHHHHcCCeEeeCCcccCC----CCeEEEEEECCCCCEEEEEEeCC---
Q 024414 162 --DK----Y--DIGTGFGHFGIAVDDVAKTVELIKAKGGKVTREPGPVKG----GNTVIAFIEDPDGYKFELLERGP--- 226 (268)
Q Consensus 162 --~~----~--~~g~g~~hi~f~V~Did~~~~~L~~~G~~i~~~p~~~~~----G~~~~~~~~DPdG~~iEl~e~~~--- 226 (268)
.. + .+|.|+..|+|+|+|++++++++.++|++...+|....+ |.....-+.-+.|..+.|+++..
T Consensus 77 ~~~~~a~~~~~~HG~gV~dvaf~V~Da~~a~~~A~~~Ga~~~~~~~~~~d~~~~g~~~~~~I~~~G~~~h~lVdr~~~~~ 156 (398)
T PLN02875 77 FSSDAARRFFAKHGLAVRAVGVLVEDAEEAFRTSVAHGARPVLEPTELGDEASGGKAVIAEVELYGDVVLRYVSYKGFDG 156 (398)
T ss_pred cCcHHHHHHHHHcCCeeeEEEEEECCHHHHHHHHHHCCCeeccCCccccccccCceEEEEEEEccCCcEEEEEccCCCCC
Confidence 00 1 267899999999999999999999999998777665422 23455557778888888887531
Q ss_pred ------------C--------CCCceeEEEEcCCHHHHHHHHHHhcCCeEeeeecCCC
Q 024414 227 ------------T--------PEPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPE 264 (268)
Q Consensus 227 ------------~--------~~~l~~v~L~v~d~~~s~~FY~~vlG~~~~~~~~~p~ 264 (268)
. ...++|++++|.+++.++.||+++|||+..+..+.++
T Consensus 157 ~~f~p~f~~~~~~~~~~~~~gl~~IDHi~iaV~~ld~a~~fY~~vlGf~~~~~~d~~~ 214 (398)
T PLN02875 157 AKFLPGYEPVESSSSFPLDYGLRRLDHAVGNVPNLLPAVNYIAGFTGFHEFAEFTAED 214 (398)
T ss_pred CccCCCcccccccccCCCCCCcceeCcceechhhHHHHHHHHHHhcCCeeeeeecccc
Confidence 0 1258999999999999999999999999887665543
No 83
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=99.45 E-value=1.6e-12 Score=103.74 Aligned_cols=119 Identities=31% Similarity=0.399 Sum_probs=80.6
Q ss_pred ceeeEEEEEeCCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCCCCceEEEEEeeccCCCCCC--------C-CCC
Q 024414 99 RRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYD--------I-GTG 169 (268)
Q Consensus 99 ~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~--------~-g~g 169 (268)
.++.|+.+.+++..+..+||..+||++.....+.+..+.. +++.... -.+|+.++.+..... . +.|
T Consensus 41 tr~~gm~l~~~~~fke~~Fsl~fL~~~~~~~vP~~~~~~~-v~~~~~~----~~~ELthn~Gtes~~~~~~~ngN~~prG 115 (170)
T KOG2944|consen 41 TRVNGMALLVPDDFKEAKFSLYFLGAEVSEDVPKPEHGVS-VFVFSRN----AKLELTHNWGTESPPDQAYLNGNKEPRG 115 (170)
T ss_pred hhhccceeechhhhhHhhhHHHhhcccccccCccCCCCCc-eEEeccc----CceeeecCCCCCCCcchhhcCCCCCCCc
Confidence 4666677777777777777777777765443332222222 4443332 257777765543221 2 249
Q ss_pred eeEEEEEECCHHHHHHHHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEe
Q 024414 170 FGHFGIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 224 (268)
Q Consensus 170 ~~hi~f~V~Did~~~~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~ 224 (268)
++||||.|+|++++.++++++|+++...+.+... ...+|+.||||+.||+..+
T Consensus 116 fgHIci~V~di~sac~~lkekGV~f~Kk~~dGk~--K~iaF~~dpDgywiei~~~ 168 (170)
T KOG2944|consen 116 FGHICIEVDDINSACERLKEKGVRFKKKLKDGKM--KPIAFLHDPDGYWIEIELE 168 (170)
T ss_pred cceEEEEeCCHHHHHHHHHHhCceeeecCCCccc--cceeEEECCCCCeEEEeec
Confidence 9999999999999999999999998766554433 2678999999999999754
No 84
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=99.35 E-value=9.9e-12 Score=105.05 Aligned_cols=101 Identities=27% Similarity=0.380 Sum_probs=76.5
Q ss_pred ceeeEEEEEeC--CHHHHHHHHHhhcCCEEEEEecCCC--CceeEEEEeeCCCCceEEEEEeeccCC--CC-------CC
Q 024414 99 RRMLHVVYRVG--DLDRTIKFYTECLGMKLLRKRDIPE--EKYTNAFLGYGPEDSHFVIELTYNYGV--DK-------YD 165 (268)
Q Consensus 99 ~~l~HV~l~V~--Dle~a~~FY~~vLG~~~~~~~~~~~--~~~~~~~l~~g~~~~~~~lel~~~~~~--~~-------~~ 165 (268)
.+|+||++.|+ |++++++||+++|||+........+ .+.....+..+. ..+.+++..+... .. ..
T Consensus 2 ~~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~~--g~i~l~L~~~~~~~~~s~~~~fl~~~ 79 (191)
T cd07250 2 TRIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASPD--GKIRIPLNEPASGKRKSQIQEFLEYY 79 (191)
T ss_pred ceeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECCC--CcEEEEEecCCCCCCccHHHHHHHHh
Confidence 57999999999 9999999999999999887665433 234445554432 3567777764331 11 12
Q ss_pred CCCCeeEEEEEECCHHHHHHHHHHcCCeEeeCCccc
Q 024414 166 IGTGFGHFGIAVDDVAKTVELIKAKGGKVTREPGPV 201 (268)
Q Consensus 166 ~g~g~~hi~f~V~Did~~~~~L~~~G~~i~~~p~~~ 201 (268)
.+.|++||||.|+|+++++++|+++|+++...|...
T Consensus 80 ~G~Gv~HIAf~vdDI~~~~~~L~~~Gv~~l~~P~~y 115 (191)
T cd07250 80 GGAGVQHIALATDDIFATVAALRARGVEFLPIPDNY 115 (191)
T ss_pred CCCceeEEEEECCCHHHHHHHHHHcCCeeccCchhh
Confidence 478999999999999999999999999998776543
No 85
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=99.31 E-value=5.2e-12 Score=111.05 Aligned_cols=165 Identities=21% Similarity=0.357 Sum_probs=119.7
Q ss_pred CceeeEEEEEeCCHHHHHHHHHhhcCCEEEEEecCCCC--ceeEEEEeeCCCCceEEEEEeeccCCCC-----CCCCCCe
Q 024414 98 KRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEE--KYTNAFLGYGPEDSHFVIELTYNYGVDK-----YDIGTGF 170 (268)
Q Consensus 98 ~~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~--~~~~~~l~~g~~~~~~~lel~~~~~~~~-----~~~g~g~ 170 (268)
..+++||.+.|.|...+..||+..|||+.....+.+.+ ......++.| ...+.+.-..++.... ..+|.|+
T Consensus 15 ~l~f~Hi~F~vgna~q~A~~y~~~fGfep~A~~~letg~~~~~s~alr~g--~~vFv~~s~~~p~~~~~G~~l~~Hgdgv 92 (381)
T KOG0638|consen 15 FLRFHHIEFWVGNAKQAARWYCSGFGFEPLAYRGLETGSREWASHALRQG--KIVFVFNSAYNPDNSEYGDHLVKHGDGV 92 (381)
T ss_pred eeeeeEEEEEecCcHHHHHHHHhhcCCcchhcccccccchHHHHHHhhcC--CEEEEEecCCCCCchhhhhhhhhcccch
Confidence 56899999999999999999999999998775533221 1111222222 1122222222222111 1266788
Q ss_pred eEEEEEECCHHHHHHHHHHcCCeEeeCCcccCC--CCeEEEEEECCCCCEEEEEEeCCC---------------------
Q 024414 171 GHFGIAVDDVAKTVELIKAKGGKVTREPGPVKG--GNTVIAFIEDPDGYKFELLERGPT--------------------- 227 (268)
Q Consensus 171 ~hi~f~V~Did~~~~~L~~~G~~i~~~p~~~~~--G~~~~~~~~DPdG~~iEl~e~~~~--------------------- 227 (268)
-.+||+|+|.+++.+.+.++|+++..+|.++.+ |-.+.+.+..+......++|+...
T Consensus 93 kdvafeVeD~da~~~~~va~Ga~v~~~p~~~~da~G~v~~A~l~tygd~thtlvEr~~y~g~FLPGF~~v~~~~~fp~l~ 172 (381)
T KOG0638|consen 93 KDVAFEVEDADAIFQEAVANGAKVVRPPWEESDAQGAVTYAVLKTYGDTTHTLVERKGYKGPFLPGFEPVSSDALFPKLP 172 (381)
T ss_pred hceEEEecchHHHHHHHHHcCCcccCCcceeeccCCcEEEEEEecccchhhhhhhhccccccCCCCcccCccccccCCCC
Confidence 889999999999999999999999888776643 556778888887777778876621
Q ss_pred ---CCCceeEEEEcC--CHHHHHHHHHHhcCCeEeeeecCCC
Q 024414 228 ---PEPLCQVMLRVG--DLDRSINFYEQAFGMELLRKRDNPE 264 (268)
Q Consensus 228 ---~~~l~~v~L~v~--d~~~s~~FY~~vlG~~~~~~~~~p~ 264 (268)
...++|++.++. +++.+.+||.+.+||.-.+..++++
T Consensus 173 ~~~~~~iDH~vgn~p~~em~sa~~wy~~~l~Fhrfwsvdd~~ 214 (381)
T KOG0638|consen 173 KGGLNRIDHVVGNQPDGEMESALRWYEKCLGFHRFWSVDDSQ 214 (381)
T ss_pred ccceeehhhhhccCCcccchHHHHHHHHhhcccccccCCcch
Confidence 135799999996 8999999999999999888877764
No 86
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=99.23 E-value=1.4e-10 Score=87.80 Aligned_cols=119 Identities=26% Similarity=0.285 Sum_probs=81.6
Q ss_pred ceeeEEEEEeCCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCCCCceEEEEEeeccCCCC--CCCCC--CeeE--
Q 024414 99 RRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDK--YDIGT--GFGH-- 172 (268)
Q Consensus 99 ~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~--~~~g~--g~~h-- 172 (268)
..+-|++|.|.|++++++||.++||++.-...+ .|+.+.-.++.+.+.+........ ...+. -+.|
T Consensus 3 ~~~FHLA~pV~Dl~~tr~FYgevlG~~~GRstd--------~wvdfDfyGHQ~v~Hl~~q~~~~~~g~V~~~~v~~pHfG 74 (138)
T COG3565 3 PVPFHLAIPVNDLDETRRFYGEVLGCKEGRSTD--------TWVDFDFYGHQVVAHLTPQPDSQGSGKVDGHGVPPPHFG 74 (138)
T ss_pred ccceEEeeeccccHHHHhhhhhhcccccccccc--------eEEEeeecccEEEEEecCCcccccCcccCCCCCCCccce
Confidence 346799999999999999999999998654432 344444444556565554321111 11111 2224
Q ss_pred EEEEECCHHHHHHHHHHcCCeEeeCCccc---CCCCeEEEEEECCCCCEEEEEEeC
Q 024414 173 FGIAVDDVAKTVELIKAKGGKVTREPGPV---KGGNTVIAFIEDPDGYKFELLERG 225 (268)
Q Consensus 173 i~f~V~Did~~~~~L~~~G~~i~~~p~~~---~~G~~~~~~~~DPdG~~iEl~e~~ 225 (268)
+.+.++|--++.++|.++|+....+|... .-|+.+.+++.||.||.+|+-.-+
T Consensus 75 vVl~~edW~alaerlea~gi~~~i~P~vRF~Ge~gEq~TlFl~DP~gN~lEfK~fR 130 (138)
T COG3565 75 VVLPVEDWFALAERLEAAGIPFHIPPKVRFKGEPGEQRTLFLFDPSGNALEFKGFR 130 (138)
T ss_pred EEEEHHHHHHHHHHHHHcCCCcccCceEEecCCccceEEEEEECCCCCeeeeeccc
Confidence 45667788899999999998886666532 226788999999999999997543
No 87
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=99.14 E-value=2.6e-09 Score=84.16 Aligned_cols=111 Identities=14% Similarity=0.173 Sum_probs=74.7
Q ss_pred EEEe-CCHHHHHHHHHhhcCCEEEEEecCC----------CCceeEEEEeeCCCCceEEEEEeeccCCCCCCCCCCeeEE
Q 024414 105 VYRV-GDLDRTIKFYTECLGMKLLRKRDIP----------EEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHF 173 (268)
Q Consensus 105 ~l~V-~Dle~a~~FY~~vLG~~~~~~~~~~----------~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi 173 (268)
.|.+ .|.++|++||+++||+++......+ .+.+..+.+..++ ..+.+...........+ +-.++
T Consensus 4 ~L~~~~~~~eAi~FY~~~fg~~~~~~~~~~~~~~~~~~~~~~~i~ha~l~i~g----~~l~~~d~~~~~~~~~~-~~~~l 78 (128)
T cd06588 4 YLWFNGNAEEALEFYQSVFGGEITSLTRYGEGPPPDPEEPEGKVMHAELTIGG----QRLMASDGGPGFPFTFG-NGISL 78 (128)
T ss_pred EEeeCCCHHHHHHHHHHHhCCEeEEEEEcCCCCCCCCCCcCCcEEEEEEEECC----EEEEEEcCCCCCCCCCC-CCEEE
Confidence 4667 8999999999999999998765321 1223344455443 13333332211111122 23478
Q ss_pred EEEECC---HHHHHHHHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEEE
Q 024414 174 GIAVDD---VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 222 (268)
Q Consensus 174 ~f~V~D---id~~~~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~ 222 (268)
++.|+| +++++++|.+.| ++..++...++| .+..+++||+|+.|+|.
T Consensus 79 ~i~~~~~e~v~~~~~~l~~~g-~~~~~~~~~~~g-~~~~~v~Dp~G~~W~i~ 128 (128)
T cd06588 79 SVECDSEEEADRLFEALSEGG-TVLMPLQKTFWS-PLFGWVTDRFGVSWQIN 128 (128)
T ss_pred EEECCCHHHHHHHHHHHhcCC-eEeccchhcCcc-cccEEEECCCCCEEEeC
Confidence 999986 778889986655 888888887776 57899999999999873
No 88
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=99.12 E-value=3.4e-10 Score=104.41 Aligned_cols=127 Identities=22% Similarity=0.364 Sum_probs=86.5
Q ss_pred CceeeEEEEEeC--CHHHHHHHHHhhcCCEEEEEecCCC--CceeEEEEeeCCCCceEEEEEeeccCC--C-------CC
Q 024414 98 KRRMLHVVYRVG--DLDRTIKFYTECLGMKLLRKRDIPE--EKYTNAFLGYGPEDSHFVIELTYNYGV--D-------KY 164 (268)
Q Consensus 98 ~~~l~HV~l~V~--Dle~a~~FY~~vLG~~~~~~~~~~~--~~~~~~~l~~g~~~~~~~lel~~~~~~--~-------~~ 164 (268)
..+|+||++.|+ |++++++||+++|||+.....+... .+.....+... ...+.+++..+... . ..
T Consensus 156 ~~~iDHv~i~V~~~dl~~~~~fY~~~lGf~~~~~~~~~~~~~~~~s~~~~~~--~g~~~i~L~ep~~~~~~s~i~~fl~~ 233 (353)
T TIGR01263 156 LIAIDHLVGNVYRGQMEPWAEFYEKIFGFREIRSFDIKTEYSALNSIVMASP--DGKVKIPLNEPASGKDKSQIEEFLEF 233 (353)
T ss_pred eEEeeeeEcccCCccHHHHHHHHHHHhCCceeeEEEeccCCccEEEEEEECC--CCcEEEEEeccCCCCCCCHHHHHHHH
Confidence 568999999999 9999999999999999887655322 22222233222 23466777763211 1 12
Q ss_pred CCCCCeeEEEEEECCHHHHHHHHHHcCCeEeeCCcccCC------C-----------CeEEEEEECCCCCEEEEEEeCC
Q 024414 165 DIGTGFGHFGIAVDDVAKTVELIKAKGGKVTREPGPVKG------G-----------NTVIAFIEDPDGYKFELLERGP 226 (268)
Q Consensus 165 ~~g~g~~hi~f~V~Did~~~~~L~~~G~~i~~~p~~~~~------G-----------~~~~~~~~DPdG~~iEl~e~~~ 226 (268)
..+.|++||||.|+|+++++++|+++|+.+...|..+-. + .....+=.|.+|..+.++.++-
T Consensus 234 ~~g~Gv~HiAf~vdDi~~~~~~l~~~Gv~~l~~P~~yY~~l~~r~~~~~~~~~~~l~~~~iL~D~d~~g~llqift~~~ 312 (353)
T TIGR01263 234 YNGAGVQHIALNTDDIVRTVRALRARGVEFLDTPDTYYDLLGERLGGHVKEDLDTLRELNILIDGDEDGYLLQIFTKPL 312 (353)
T ss_pred cCCCCccEEEEEcCCHHHHHHHHHHcCCccCcCCHHHHHHHHHHhcccccchHHHHHHCCEEEecCCCceEEEEeccCC
Confidence 247899999999999999999999999998876632211 0 0012334567777777776654
No 89
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.10 E-value=6.8e-09 Score=82.61 Aligned_cols=117 Identities=20% Similarity=0.178 Sum_probs=87.2
Q ss_pred EEEeC-CHHHHHHHHHhhcCCEEEEEecCCC----------CceeEEEEeeCCCCceEEEEEeeccCCCCCCCCC-CeeE
Q 024414 105 VYRVG-DLDRTIKFYTECLGMKLLRKRDIPE----------EKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGT-GFGH 172 (268)
Q Consensus 105 ~l~V~-Dle~a~~FY~~vLG~~~~~~~~~~~----------~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~-g~~h 172 (268)
-|..+ |-++|++||+++||.++.......+ +..-.+.+..++ ..|.+...........++ --.-
T Consensus 5 Yl~f~gn~~~Al~fY~~vFgae~~~~~~~~d~~~~~~~~~~~~i~HA~l~i~g----~~im~sd~~~~~~~~~~~~~s~~ 80 (136)
T COG2764 5 YLFFNGNAREALAFYKEVFGAEELKRVPFGDMPSSAGEPPGGRIMHAELRIGG----STIMLSDAFPDMGATEGGGTSLS 80 (136)
T ss_pred EEEECCCHHHHHHHHHHHhCceEEEEEEcCccCccccccccCceEEEEEEECC----EEEEEecCCCccCcccCCCeeEE
Confidence 36778 9999999999999999988776655 455566666653 234444322222222222 2335
Q ss_pred EEEEECCHHHHHHHHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEeCC
Q 024414 173 FGIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP 226 (268)
Q Consensus 173 i~f~V~Did~~~~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~~~ 226 (268)
|.+.++|++++++++.+.|+++..+.++..+| .+...++||.|+.|.|.....
T Consensus 81 l~~~~~d~da~f~~a~~aGa~v~mpl~~~fwG-~r~G~v~D~fGv~W~l~~~~~ 133 (136)
T COG2764 81 LDLYVEDVDAVFERAAAAGATVVMPLEDTFWG-DRYGQVTDPFGVVWMLNTPVE 133 (136)
T ss_pred EEEEehHHHHHHHHHHhcCCeEEecchhcCcc-cceEEEECCCCCEEEEecCcc
Confidence 78888999999999999999999999999887 578999999999999986654
No 90
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=99.08 E-value=4.7e-10 Score=85.95 Aligned_cols=122 Identities=26% Similarity=0.424 Sum_probs=74.3
Q ss_pred ceeeEEEEEeCCHHHHHHHHHhhcCCEEEEEecCCCCce---eEEEEeeCCCCceEEEE--------EeeccCCC-CCCC
Q 024414 99 RRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKY---TNAFLGYGPEDSHFVIE--------LTYNYGVD-KYDI 166 (268)
Q Consensus 99 ~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~---~~~~l~~g~~~~~~~le--------l~~~~~~~-~~~~ 166 (268)
.+++||++.|+|++++++||+++||++............ ...+............. ........ ....
T Consensus 1 ~~l~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (138)
T COG0346 1 MGIHHVTLAVPDLEASIDFYTDVLGLRLVKDTVNEADDGGGYHLLFLDGDGGPGELLAFFGFEGRAGTGFVGDVALGVPG 80 (138)
T ss_pred CceEEEEEeeCCHhHhHHHHHhhcCCeeeeecccccCCceEEEEEeccCCCCcccceeecccccccccccccceEEeecC
Confidence 368999999999999999999999999987665433221 11111111000000000 00000000 0001
Q ss_pred C-CCeeEEEEEECC---HHHHHHHHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEE
Q 024414 167 G-TGFGHFGIAVDD---VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 223 (268)
Q Consensus 167 g-~g~~hi~f~V~D---id~~~~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e 223 (268)
+ .+..|+++.++| .......+...|..+..... ..++ ..+|++||||+.+|+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~--~~~~~~dp~g~~~e~~~ 138 (138)
T COG0346 81 GDLGLGHLAFEVDDEAFGDAALAFLDPDGVRIELGEP-GRGG--VHVYFRDPDGILIELAT 138 (138)
T ss_pred chhccCceeEecccccccceEEEeeCCCCCEEEeecC-CCcc--eEEEEECCCCcEEEeeC
Confidence 1 246799999998 66777777778888755433 2222 27999999999999974
No 91
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=99.04 E-value=2.5e-09 Score=82.32 Aligned_cols=118 Identities=25% Similarity=0.289 Sum_probs=78.8
Q ss_pred eeeEEEEEeCCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCCCCceEEEEEeec--cC----CCCCCCCCCeeEE
Q 024414 100 RMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYN--YG----VDKYDIGTGFGHF 173 (268)
Q Consensus 100 ~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~--~~----~~~~~~g~g~~hi 173 (268)
++--|.|.|+|++++.+||+. |||+....+..+. ...+-.++. .+++-|.+. .. .........-.-+
T Consensus 3 ~mIFvNLPVkDL~~S~~Fy~a-lGfk~Npq~sde~----a~~mi~~~n--i~vMLL~~~~fq~F~~~~i~dt~~s~evli 75 (133)
T COG3607 3 QMIFVNLPVKDLEASKAFYTA-LGFKFNPQFSDED----AACMIISDN--IFVMLLEEARFQTFTKRQIADTTKSREVLI 75 (133)
T ss_pred eEEEEecchhhHHHHHHHHHH-hCcccCCCccccc----ceeEEEecc--EEEEEeccHHhhhhcccccccccCCceEEE
Confidence 345678999999999999997 9999887665432 233333332 222222221 00 0111122234468
Q ss_pred EEEEC---CHHHHHHHHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEeCC
Q 024414 174 GIAVD---DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP 226 (268)
Q Consensus 174 ~f~V~---Did~~~~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~~~ 226 (268)
+|.+. .+|++++++.++|++...++.+. |..+...|.|||||.||+..-.+
T Consensus 76 ~ls~~s~eevd~~v~ka~eaGGk~~~~~~d~--gfMYg~~fqDpDGh~wE~l~m~~ 129 (133)
T COG3607 76 SLSAGSREEVDELVDKALEAGGKPANEPQDE--GFMYGRSFQDPDGHVWEFLWMDP 129 (133)
T ss_pred EeccCcHHHHHHHHHHHHHcCCCCCCCcccc--ccccceeeeCCCCCeEEEEEeCH
Confidence 88886 48999999999999997776665 34566789999999999987654
No 92
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=98.99 E-value=2.3e-09 Score=91.17 Aligned_cols=120 Identities=40% Similarity=0.670 Sum_probs=89.4
Q ss_pred eeeEEEEEeCCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCCCCceEEEEEeeccCCCCCCCCCCeeEEEEEECC
Q 024414 100 RMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDD 179 (268)
Q Consensus 100 ~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~V~D 179 (268)
.+..|.+.|.|++++++||.+.||+++..+ ++.+..+.++++++. ..+|+....+...+..+.|..-+++-.++
T Consensus 149 pv~~V~l~VgdL~ks~kyw~~~lgM~ilek----eek~t~~~mgYgd~q--~~LElt~~~~~id~~kg~griafaip~d~ 222 (299)
T KOG2943|consen 149 PVLQVMLNVGDLQKSIKYWEKLLGMKILEK----EEKYTRARMGYGDEQ--CVLELTYNYDVIDRAKGFGRIAFAIPTDD 222 (299)
T ss_pred CeEEEEEEehhHHHHHHHHHHHhCcchhhh----hhhhhhhhhccCCcc--eEEEEEeccCcccccccceeEEEeccccc
Confidence 355688999999999999999999999875 334467888888764 78999988777666655554444455567
Q ss_pred HHHHHHHHHHcCCeEeeCCcccC--C-CCeEEEEEECCCCCEEEEEEeC
Q 024414 180 VAKTVELIKAKGGKVTREPGPVK--G-GNTVIAFIEDPDGYKFELLERG 225 (268)
Q Consensus 180 id~~~~~L~~~G~~i~~~p~~~~--~-G~~~~~~~~DPdG~~iEl~e~~ 225 (268)
+..+-+.++..+.++..+....+ . -..+.+.+.||||+.+.|+...
T Consensus 223 ~~~l~e~iK~~n~~i~~~lttl~tPgka~vqvvil~DPDgheicfVdde 271 (299)
T KOG2943|consen 223 LPKLQEAIKSANGTILTPLTTLDTPGKATVQVVILADPDGHEICFVDDE 271 (299)
T ss_pred cccHHHHHHHhccccccceeeccCCCcceeEEEEEECCCCceEEEeccH
Confidence 88888888888777655444332 2 2356778889999999999654
No 93
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=98.98 E-value=1.2e-08 Score=84.85 Aligned_cols=147 Identities=22% Similarity=0.316 Sum_probs=85.5
Q ss_pred eeEEEEEeCCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCCCCceEEEEEeecc--CCC----C-C-----CCCC
Q 024414 101 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNY--GVD----K-Y-----DIGT 168 (268)
Q Consensus 101 l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~--~~~----~-~-----~~g~ 168 (268)
|+||++.|+|++++.++|++.|||++......+..+..+..+.+++. .||+.... ... . + ..+.
T Consensus 1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~GT~N~li~f~~~----YlEli~i~~~~~~~~~~~~~~~~~~~~~~ 76 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQRLGFTVTPGGEHPGWGTANALIPFGDG----YLELIAIDPEAPAPDRGRWFGLDRLAGGE 76 (175)
T ss_dssp EEEEEEE-TTGGG----GGGS--S--EEEEE-TTT-EEEEEEE-SSS----EEEEEEES-HHHSTGGGT-TTTHHHHT--
T ss_pred CCEEEEEcCCHHHHHHhhhhcceEeecCCCcCCCCccEEEEEeeCCc----eEEEEEeCCcccccccccceechhhcCCC
Confidence 79999999999999999988899999988877776767777777643 45555421 111 1 1 1467
Q ss_pred CeeEEEEEECCHHHHHHHHHHcCCeEeeCCcccCCC--CeEEEEEECC----CCCEEEEEEeCCC----------CCCce
Q 024414 169 GFGHFGIAVDDVAKTVELIKAKGGKVTREPGPVKGG--NTVIAFIEDP----DGYKFELLERGPT----------PEPLC 232 (268)
Q Consensus 169 g~~hi~f~V~Did~~~~~L~~~G~~i~~~p~~~~~G--~~~~~~~~DP----dG~~iEl~e~~~~----------~~~l~ 232 (268)
|+.++|+.++|+++..+++++.|+.... +...+++ .-+.+++.|. .+..-.+++-... ...|.
T Consensus 77 g~~~~~l~t~d~~~~~~~l~~~G~~~~~-r~~~dG~~~~w~~~~~~~~~~p~~~~~Pf~i~~~~~~~~~~~h~ng~~~i~ 155 (175)
T PF13468_consen 77 GLYGWALRTDDIEAVAARLRAAGLDAGS-RVRPDGGDLRWRLAFPEDGALPFGGLLPFFIQWETPHPEWARHPNGALGIT 155 (175)
T ss_dssp EEEEEEEE-S-HHHHHHHHHTTT-EEEE-EEEEEE-EEEEEEEEEE-SS---SS---EEEEESS-CCHHTTT--TTEEEE
T ss_pred CeEEEEEecCCHHHHHHHHHhcCCCCCC-cCcCCCCcceEEEEEeCCcccccCCCCcEEEEeCCCCcccccCCCccceEE
Confidence 8999999999999999999999976211 1111111 1234445553 2455666643321 13689
Q ss_pred eEEEEcCCHHHHHHHHHHhc
Q 024414 233 QVMLRVGDLDRSINFYEQAF 252 (268)
Q Consensus 233 ~v~L~v~d~~~s~~FY~~vl 252 (268)
++.+.+.|.+++.++|.++|
T Consensus 156 ~v~i~~~d~~~~~~~~~~l~ 175 (175)
T PF13468_consen 156 RVVIAVPDPDAAAARYARLL 175 (175)
T ss_dssp EEEEEETTHHHHHHHHHHH-
T ss_pred EEEEEeCCHHHHHHHHHhhC
Confidence 99999999999999999875
No 94
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=98.94 E-value=5.2e-09 Score=97.23 Aligned_cols=127 Identities=17% Similarity=0.231 Sum_probs=88.8
Q ss_pred CceeeEEEEEeCCHHHHHHHHHhhcCCEEEEEecCCC-----CceeEEEEeeCCCCceEEEEEeeccCC--C--------
Q 024414 98 KRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPE-----EKYTNAFLGYGPEDSHFVIELTYNYGV--D-------- 162 (268)
Q Consensus 98 ~~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~-----~~~~~~~l~~g~~~~~~~lel~~~~~~--~-------- 162 (268)
..+|+||++.|+|++.++.||+++|||+.....+.++ .+++...+..++ ..+.++|.++... .
T Consensus 178 l~~IDHi~iaV~~ld~a~~fY~~vlGf~~~~~~d~~~i~~~~sgl~S~vl~sp~--g~v~ipLnEP~~~~~~~SqI~eFL 255 (398)
T PLN02875 178 LRRLDHAVGNVPNLLPAVNYIAGFTGFHEFAEFTAEDVGTVDSGLNSMVLASNN--EMVLLPLNEPTFGTKRKSQIQTYL 255 (398)
T ss_pred cceeCcceechhhHHHHHHHHHHhcCCeeeeeeccccccccccceEEEEEEcCC--CcEEEEeccCCCCCCCcChHHHHH
Confidence 5689999999999999999999999999886554322 124555555443 3467777775321 1
Q ss_pred CCCCCCCeeEEEEEECCHHHHHHHHHHc----CCeEeeCC-cccC------CC------------CeEEEEEECCCCCEE
Q 024414 163 KYDIGTGFGHFGIAVDDVAKTVELIKAK----GGKVTREP-GPVK------GG------------NTVIAFIEDPDGYKF 219 (268)
Q Consensus 163 ~~~~g~g~~hi~f~V~Did~~~~~L~~~----G~~i~~~p-~~~~------~G------------~~~~~~~~DPdG~~i 219 (268)
....|.|++||||.|+||.+++++|+++ |+.+...| ..+- -+ .....+=.|.+|..+
T Consensus 256 ~~~~G~GIQHIAl~tdDI~~av~~Lra~~~~~Gv~fL~~Pp~~YYd~L~~R~~~~l~~e~~~~L~~~~ILvD~d~~G~LL 335 (398)
T PLN02875 256 EHNEGPGLQHLALKSDDIFGTLREMRARSHIGGFEFMPPPPPTYYKNLKKRVGDVLTEEQIKECEELGILVDKDDQGVLL 335 (398)
T ss_pred HhcCCCCeeEEEeecCCHHHHHHHHHhccccCCeecCCCChHHHHHHHHHHhccCCChhhHHHHHHcCEEEecCCCceEE
Confidence 1225789999999999999999999999 99988755 2110 00 011233446678888
Q ss_pred EEEEeCC
Q 024414 220 ELLERGP 226 (268)
Q Consensus 220 El~e~~~ 226 (268)
.++..+-
T Consensus 336 QIFTkp~ 342 (398)
T PLN02875 336 QIFTKPV 342 (398)
T ss_pred EEecccc
Confidence 8877653
No 95
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=98.76 E-value=6.7e-08 Score=87.39 Aligned_cols=106 Identities=19% Similarity=0.292 Sum_probs=73.0
Q ss_pred ceeeEEEEEeCCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCCCCceEEEEEeeccCCCCCCCCCCeeEEEEEEC
Q 024414 99 RRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVD 178 (268)
Q Consensus 99 ~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~V~ 178 (268)
-+.-||+|.|+|++++++||+++||+.. +..+ ..+.+ + ...+.+-+.+. + .....-.-+|+.++
T Consensus 246 ~~~IfVNLpV~DL~rS~~FYt~LF~~n~---Fsde----~a~cm--~--dtI~vMllt~~---D--~~~~~evLl~Ls~~ 309 (357)
T PRK01037 246 PKTFSVVLEVQDLRRAKKFYSKMFGLEC---WDGD----KLFLL--G--KTSLYLQQTKA---E--KKNRGTTTLSLELE 309 (357)
T ss_pred CceEEEEeeeCCHHHHHHHHHHHhCCCC---CCCC----ccccc--c--CcEEEEEecCC---C--CCCcceEEEEeccC
Confidence 3567999999999999999999988873 2211 12222 2 23333333333 1 12233345899998
Q ss_pred C---HHHHHHHHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEe
Q 024414 179 D---VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 224 (268)
Q Consensus 179 D---id~~~~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~ 224 (268)
+ +|++++++.++|++...++.+++. .--|.|||||.||++..
T Consensus 310 Sre~VD~lv~~A~aaGG~~~~~~~D~Gf----~rsf~D~DGH~WEi~~~ 354 (357)
T PRK01037 310 CEHDFVRFLRRWEMLGGELGEQADGHFP----LRLVFDLDGHIWVVSCV 354 (357)
T ss_pred CHHHHHHHHHHHHHcCCCCCCCcccccC----cceeECCCCCEEEEEEE
Confidence 5 899999999999977666555543 35789999999999864
No 96
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=98.67 E-value=1.3e-07 Score=82.31 Aligned_cols=137 Identities=19% Similarity=0.244 Sum_probs=91.4
Q ss_pred CCcccccccCcccccccc-------cccccccccccccC---------hhHHh-hhcCceeeEEEEEeCCHHHHHHHHHh
Q 024414 58 AAKPLRGDVNSTGVASSA-------GNAAQASTSAAHES---------ALEWV-KKDKRRMLHVVYRVGDLDRTIKFYTE 120 (268)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g---------~~~~~-~~~~~~l~HV~l~V~Dle~a~~FY~~ 120 (268)
+.|+-+++||..++=+-. .|- +-.+...+.. .+.|. .-....|+||+|.|.|++++.+||++
T Consensus 110 AlYl~DPEGNGIEiYaDrp~~~W~~~~~-~v~m~t~~ld~~~ll~~~~~~~~~g~p~~t~IGHvHL~v~~l~eA~~fY~~ 188 (265)
T COG2514 110 ALYLEDPEGNGIEIYADRPRSTWDWQND-QVKMDTEPLDVEALLEEATKEPWTGLPAGTIIGHVHLKVADLEEAEQFYED 188 (265)
T ss_pred eeeecCCCCCeEEEEecCChHHhcccCC-eeeecccccCHHHHhhhccccccccCCCCcEEeEEEEEeCCHHHHHHHHHH
Confidence 689999999998875320 000 0000111111 12222 12367899999999999999999999
Q ss_pred hcCCEEEEEecCCCCceeEEEEeeCCCCceEEEEEeeccCCCCC-CCCCCeeEEEEEECCHHHHHHHHHHcCCeEeeCCc
Q 024414 121 CLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKY-DIGTGFGHFGIAVDDVAKTVELIKAKGGKVTREPG 199 (268)
Q Consensus 121 vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~-~~g~g~~hi~f~V~Did~~~~~L~~~G~~i~~~p~ 199 (268)
+|||++..+.+ ...|+..|+..+++....|........ ....|+..+.+.+++...+.....
T Consensus 189 ~LG~~~~~~~~------~A~F~a~G~YHHHia~N~W~s~~~~~~~~~~~GLa~~~i~~~~~~~l~~~~~----------- 251 (265)
T COG2514 189 VLGLEVTARGP------SALFLASGDYHHHLAANTWNSRGARPRNANASGLAWLEIHTPDPEKLDATGT----------- 251 (265)
T ss_pred hcCCeeeecCC------cceEEecCCcceeEEEeccccCCCCCCCCCCCCcceEEEEcCCccccccccc-----------
Confidence 99999988722 368999999999988888875444333 355688889999887433311111
Q ss_pred ccCCCCeEEEEEECCCCCEEEEE
Q 024414 200 PVKGGNTVIAFIEDPDGYKFELL 222 (268)
Q Consensus 200 ~~~~G~~~~~~~~DPdG~~iEl~ 222 (268)
...||+|+.+.++
T Consensus 252 ----------~~~Dp~G~~i~~~ 264 (265)
T COG2514 252 ----------RLTDPWGIVIRVV 264 (265)
T ss_pred ----------ceecCCCceEEEe
Confidence 1189999998875
No 97
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=98.61 E-value=6.4e-07 Score=80.60 Aligned_cols=159 Identities=18% Similarity=0.235 Sum_probs=103.3
Q ss_pred CceeeEEEEEeCCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCCCCceEEEEEeeccC--CCCC--CCCCCeeEE
Q 024414 98 KRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYG--VDKY--DIGTGFGHF 173 (268)
Q Consensus 98 ~~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~--~~~~--~~g~g~~hi 173 (268)
..++++|.+.|.|.+++..=|-..|||....+-.... ...++-| .+.+.+..... ...+ .+|++..-+
T Consensus 20 ~~GfeFvEf~~~d~~~~l~~l~~~lGF~~~~~Hrsk~----v~l~rQG----dinlvvn~~~~s~a~~f~~~Hgps~~a~ 91 (363)
T COG3185 20 TDGFEFVEFAVPDPQEALGALLGQLGFTAVAKHRSKA----VTLYRQG----DINLVVNAEPDSFAAEFLDKHGPSACAM 91 (363)
T ss_pred CCceeEEEEecCCHHHHHHHHHHHhCccccccccccc----eeEEEeC----CEEEEEcCCCcchhhHHHHhcCCchhee
Confidence 4689999999999955555455569999876533221 2222323 23344433211 1111 378888899
Q ss_pred EEEECCHHHHHHHHHHcCCeEeeCCc-----ccC---CCCeEEEEEECCCCC-E-----EEEEE--eCCC---CCCceeE
Q 024414 174 GIAVDDVAKTVELIKAKGGKVTREPG-----PVK---GGNTVIAFIEDPDGY-K-----FELLE--RGPT---PEPLCQV 234 (268)
Q Consensus 174 ~f~V~Did~~~~~L~~~G~~i~~~p~-----~~~---~G~~~~~~~~DPdG~-~-----iEl~e--~~~~---~~~l~~v 234 (268)
+|.|+|...++++..+.|.+....+. +.+ .-++...|+.|.+|. - ++... ..+. ..++||+
T Consensus 92 a~~V~DA~~A~a~A~a~gA~~~~~~~g~~e~~ipai~giggsllyfvd~~~~~siyd~~f~~~~~~~~~~~~g~~~IDHl 171 (363)
T COG3185 92 AFRVDDAEQALARALALGARTIDTEIGAGEVDIPAIRGIGGSLLYFVDRYGGRSIYDVEFEPNGAQGASGGVGLTAIDHL 171 (363)
T ss_pred EEeeCCHHHHHHHHHHcCCccccCCCCCccccccceeccCCcEEEEeccCCCCcccccccccccccccccccCceeechh
Confidence 99999999999999999985432222 111 112356888888841 1 22220 0111 2478999
Q ss_pred EEEc--CCHHHHHHHHHHhcCCeEeeeecCCC
Q 024414 235 MLRV--GDLDRSINFYEQAFGMELLRKRDNPE 264 (268)
Q Consensus 235 ~L~v--~d~~~s~~FY~~vlG~~~~~~~~~p~ 264 (268)
.++| ++++.+..||+++|||+..+..+.|+
T Consensus 172 ~~nv~~~~md~w~~FY~~if~~~~~~~fdi~~ 203 (363)
T COG3185 172 THNVKAGQMDTWVLFYESLFGFREIQYFDIPG 203 (363)
T ss_pred hhhcchhhHHHHHHHHHHHhCccceeeEeccC
Confidence 9997 79999999999999999988877764
No 98
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=98.57 E-value=4.2e-06 Score=64.33 Aligned_cols=114 Identities=25% Similarity=0.336 Sum_probs=65.2
Q ss_pred eEEEEEeCCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCCCCceEEEEEeeccCCCCCCCCCCeeEEEEEECCHH
Q 024414 102 LHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDVA 181 (268)
Q Consensus 102 ~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~V~Did 181 (268)
.+-+|.|.|-+..++||+++|||++..+.. ..+.++.......+.||-.+...........-++++-+.|++.+
T Consensus 2 ~~PvlRVnnR~~ni~FY~~~LGfkll~EEn------a~a~lg~~~~~erlvlEESP~~rtr~V~G~KKl~~ivIkv~~~~ 75 (125)
T PF14506_consen 2 IIPVLRVNNRDLNIDFYQKTLGFKLLSEEN------ALAILGDQQKEERLVLEESPSMRTRAVEGPKKLNRIVIKVPNPK 75 (125)
T ss_dssp EEEEEEESSHHHHHHHHTTTT--EEEEEET------TEEEEE-TT--EEEEEEE--TTT-B--SSS-SEEEEEEEESSHH
T ss_pred cCceEEEcCHHHhHHHHHhccCcEEeeccc------cEEEecCCCCceEEEEecCCccccccccCcceeeEEEEEcCCHH
Confidence 466899999999999999999999987654 34556544333344444333222223345557889999999977
Q ss_pred HHHHHHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEeC
Q 024414 182 KTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 225 (268)
Q Consensus 182 ~~~~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~~ 225 (268)
++-+. .++|..+. .-+.+-.++.+-..+|+|..|.+....
T Consensus 76 EIe~L-Lar~~~~~---~l~kg~~gyAfe~vSPEgd~~llhaEd 115 (125)
T PF14506_consen 76 EIEAL-LARGAQYD---RLYKGKNGYAFEAVSPEGDRFLLHAED 115 (125)
T ss_dssp HHHHH-HHC-S--S---EEEE-SSSEEEEEE-TT--EEEEE--S
T ss_pred HHHHH-Hhcccccc---eeEEcCCceEEEEECCCCCEEEEEEcC
Confidence 66444 45565532 222233457788889999999988654
No 99
>PRK10148 hypothetical protein; Provisional
Probab=98.50 E-value=1.4e-05 Score=64.75 Aligned_cols=116 Identities=16% Similarity=0.125 Sum_probs=76.5
Q ss_pred EEEeC-CHHHHHHHHHhhcCCEEEEEec---C-----------------CCCceeEEEEeeCCCCceEEEEEeeccCCCC
Q 024414 105 VYRVG-DLDRTIKFYTECLGMKLLRKRD---I-----------------PEEKYTNAFLGYGPEDSHFVIELTYNYGVDK 163 (268)
Q Consensus 105 ~l~V~-Dle~a~~FY~~vLG~~~~~~~~---~-----------------~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~ 163 (268)
.|... |.++|++||+++||.++..... . .++..-.+.+.+++. .+.+...... .
T Consensus 6 yL~f~g~a~eAi~FY~~~Fgae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ha~l~i~g~----~lm~sD~~~~-~ 80 (147)
T PRK10148 6 YLSFAGNCADAIAYYQQTLGAELLYKISFGEMPKSAQDSEEGCPSGMQFPDTAIAHANVRIAGS----DIMMSDAIPS-G 80 (147)
T ss_pred EEEeCCCHHHHHHHHHHHhCCEEEEEEEcccCCccccccccCCCccccCcCCcEEEEEEEECCE----EEEEECCCCC-c
Confidence 35564 8999999999999998864421 0 112334555555531 2333322111 1
Q ss_pred CCCCCCeeEEEEEECCHHH---HHHHHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEeCCCC
Q 024414 164 YDIGTGFGHFGIAVDDVAK---TVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPTP 228 (268)
Q Consensus 164 ~~~g~g~~hi~f~V~Did~---~~~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~~~~~ 228 (268)
...+. -.++++.++|.++ ++++| +.|+++..++.+..+| .+...++||.|+.|.|......|
T Consensus 81 ~~~~~-~~~l~l~~~d~ee~~~~~~aL-a~gg~v~mpl~~~~wg-~~~g~v~D~fGi~W~l~~~~~~~ 145 (147)
T PRK10148 81 KAHYS-GFTLVLDTQDVEEGKRWFDNL-AANGKIEMAWQETFWA-HGFGKVTDKFGVPWMINVVKQQP 145 (147)
T ss_pred CCCCC-eEEEEEECCCHHHHHHHHHHh-hCCCEEEecchhcchh-hccEEEECCCCCEEEEEecCCCC
Confidence 11222 3378888888776 56666 5899999999988886 47889999999999998765443
No 100
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=98.47 E-value=3.6e-07 Score=82.22 Aligned_cols=102 Identities=20% Similarity=0.266 Sum_probs=75.9
Q ss_pred CceeeEEEEEeC--CHHHHHHHHHhhcCCEEEEEecCCCC--ceeEEEEeeCCCCceEEEEEeeccCCCC-------CCC
Q 024414 98 KRRMLHVVYRVG--DLDRTIKFYTECLGMKLLRKRDIPEE--KYTNAFLGYGPEDSHFVIELTYNYGVDK-------YDI 166 (268)
Q Consensus 98 ~~~l~HV~l~V~--Dle~a~~FY~~vLG~~~~~~~~~~~~--~~~~~~l~~g~~~~~~~lel~~~~~~~~-------~~~ 166 (268)
...|+||+..|+ .++.+..||+++|||+....++.++. +.+.--+.... +.+.|.+........ ..+
T Consensus 165 ~~~IDHl~~nv~~~~md~w~~FY~~if~~~~~~~fdi~~p~tgl~Sram~Sp~--G~vrlplN~s~~~~sqi~efl~~y~ 242 (363)
T COG3185 165 LTAIDHLTHNVKAGQMDTWVLFYESLFGFREIQYFDIPGPITGLRSRAMVSPC--GKVRLPLNESADDKSQIGEFLREYR 242 (363)
T ss_pred ceeechhhhhcchhhHHHHHHHHHHHhCccceeeEeccCCcccEEEeeEecCC--CcEEeecccCCCchhHHHHHHHHhC
Confidence 358999998887 99999999999999999988876543 33333333333 345666655332222 127
Q ss_pred CCCeeEEEEEECCHHHHHHHHHHcCCeEeeCCccc
Q 024414 167 GTGFGHFGIAVDDVAKTVELIKAKGGKVTREPGPV 201 (268)
Q Consensus 167 g~g~~hi~f~V~Did~~~~~L~~~G~~i~~~p~~~ 201 (268)
|.|++||+|.++||-++++++++.|+++...|..+
T Consensus 243 G~GIQHIA~~T~dI~~tv~~lr~rG~~fl~ip~tY 277 (363)
T COG3185 243 GEGIQHIAFGTDDIYATVAALRERGVKFLPIPETY 277 (363)
T ss_pred CCcceEEEecccHHHHHHHHHHHcCCccCCCchhH
Confidence 88999999999999999999999999998766543
No 101
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=98.20 E-value=1.1e-05 Score=61.56 Aligned_cols=88 Identities=23% Similarity=0.273 Sum_probs=69.7
Q ss_pred eEEEEEECCHHHHHHHHHH-cCCeEeeCCcccCCCCeEEEEEECCCC-CEEEEEEeCCCC-------CCceeEEEEcCCH
Q 024414 171 GHFGIAVDDVAKTVELIKA-KGGKVTREPGPVKGGNTVIAFIEDPDG-YKFELLERGPTP-------EPLCQVMLRVGDL 241 (268)
Q Consensus 171 ~hi~f~V~Did~~~~~L~~-~G~~i~~~p~~~~~G~~~~~~~~DPdG-~~iEl~e~~~~~-------~~l~~v~L~v~d~ 241 (268)
.||+|.|+|++++.+.+.+ .|+..... ...+....+..++..++| ..|||+++.... ..+.|+.+.|.|+
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~-~~~~~~~v~~~~~~~~~~~~~iELi~p~~~~~~~~~~~~gi~Hia~~v~D~ 79 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWER-YRDEPQGVRVAFLYLGDGPVQIELIQPLDGDSPLDRGGGGIHHIAFEVDDL 79 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEE-EEEGCTTEEEEEEEETTETEEEEEEEESSTTCHHHHTSSEEEEEEEEESHH
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEE-EecCCCCEEEEEEEeCCCcEEEEEEEeCCCCcccccCCCCEEEEEEEeCCH
Confidence 4999999999999999999 89775433 222233456777888888 689999988653 4589999999999
Q ss_pred HHHHHHHHHhcCCeEeeee
Q 024414 242 DRSINFYEQAFGMELLRKR 260 (268)
Q Consensus 242 ~~s~~FY~~vlG~~~~~~~ 260 (268)
+++.+-+++ .|+++....
T Consensus 80 d~~~~~l~~-~G~~~~~~~ 97 (109)
T PF13669_consen 80 DAAIARLEA-QGFRVLDEG 97 (109)
T ss_dssp HHHHHHHHH-TTECEEECE
T ss_pred HHHHHHHHH-CCCEEcccC
Confidence 999999988 799976654
No 102
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=98.17 E-value=2.5e-05 Score=62.50 Aligned_cols=120 Identities=19% Similarity=0.206 Sum_probs=78.3
Q ss_pred CceeeEEEEEeCCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCCCCceEEEEEeeccCCC--C--CCCCCCeeEE
Q 024414 98 KRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVD--K--YDIGTGFGHF 173 (268)
Q Consensus 98 ~~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~--~--~~~g~g~~hi 173 (268)
..+++||.+.++|.+++..|++ .|||+...+-.... ...++-|+ +.+.+....... . ..+|+++.-+
T Consensus 7 ~~G~dFvEFa~~~~~~l~~~~~-~lGF~~~a~hrsk~----v~l~rQG~----I~~vln~ep~s~a~~~~~~HG~sv~ai 77 (139)
T PF14696_consen 7 LDGFDFVEFAVPDAQALAQLFT-ALGFQPVARHRSKD----VTLYRQGD----INFVLNSEPDSFAAEFAAQHGPSVCAI 77 (139)
T ss_dssp EEEEEEEEEE-SSTTSCHHHHC-CCCEEEECCECCCS----EEEEEETT----EEEEEEEESTSCHHHHHHHHSSEEEEE
T ss_pred CCCeEEEEEecCCHHHHHHHHH-HhCcceEEecCCcc----eEEEEeCC----EEEEEeCCCcchHHHHHHhcCCEEEEE
Confidence 4589999999999877777775 59999987643221 33334442 334443322111 1 1268899999
Q ss_pred EEEECCHHHHHHHHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEeCCCC
Q 024414 174 GIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPTP 228 (268)
Q Consensus 174 ~f~V~Did~~~~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~~~~~ 228 (268)
+|.|+|.+++++++.++|.+...++. ..+.....-++.+.|-++-|+++....
T Consensus 78 afrV~Da~~A~~rA~~~GA~~~~~~~--~~~e~~~paI~g~G~sl~yfVdr~~~~ 130 (139)
T PF14696_consen 78 AFRVDDAAAAYERAVALGAEPVQEPT--GPGELNIPAIRGIGGSLHYFVDRYGDK 130 (139)
T ss_dssp EEEES-HHHHHHHHHHTT--EEEEEE--ETT-BEEEEEE-CCC-EEEEEE--SSS
T ss_pred EEEeCCHHHHHHHHHHcCCcCcccCC--CCCcEeeeeEEccCCCEEEEEecCCCC
Confidence 99999999999999999998876543 234567788999999999999987643
No 103
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=97.68 E-value=1.9e-05 Score=70.20 Aligned_cols=145 Identities=18% Similarity=0.343 Sum_probs=93.7
Q ss_pred CceeeEEEEEeC--CHHHHHHHHHhhcCCEEEEEecCCCC-----ceeEEEEeeCCCCceEEEEEeeccCCCC-------
Q 024414 98 KRRMLHVVYRVG--DLDRTIKFYTECLGMKLLRKRDIPEE-----KYTNAFLGYGPEDSHFVIELTYNYGVDK------- 163 (268)
Q Consensus 98 ~~~l~HV~l~V~--Dle~a~~FY~~vLG~~~~~~~~~~~~-----~~~~~~l~~g~~~~~~~lel~~~~~~~~------- 163 (268)
..+++|++..++ .++.+.+||.++|||..-+..+..+- ..+.+.+. +....+.+.+.++-....
T Consensus 176 ~~~iDH~vgn~p~~em~sa~~wy~~~l~Fhrfwsvdd~~v~te~SaLrs~vla--n~~esi~mpinEp~~G~k~ksQIqe 253 (381)
T KOG0638|consen 176 LNRIDHVVGNQPDGEMESALRWYEKCLGFHRFWSVDDSQVHTEYSALRSIVLA--NYEESIKMPINEPAPGKKKKSQIQE 253 (381)
T ss_pred eeehhhhhccCCcccchHHHHHHHHhhcccccccCCcchhhhHHHHHHHHHHh--cCCccEEEeccCCCCCCccHHHHHH
Confidence 459999999999 78899999999999987665543221 11111111 222344555554322221
Q ss_pred ---CCCCCCeeEEEEEECCHHHHHHHHHHcCCeEeeCCcccCC------C--------------CeEEEEEECCCCCEEE
Q 024414 164 ---YDIGTGFGHFGIAVDDVAKTVELIKAKGGKVTREPGPVKG------G--------------NTVIAFIEDPDGYKFE 220 (268)
Q Consensus 164 ---~~~g~g~~hi~f~V~Did~~~~~L~~~G~~i~~~p~~~~~------G--------------~~~~~~~~DPdG~~iE 220 (268)
+..|.|++||++.++||=++++.++++|+.+...|..+-. + .-....=.|-.|+++.
T Consensus 254 yv~y~gG~GvQHiaL~tedIi~Ai~~lr~rG~eFLs~Ps~YYqnl~erl~~~~~~vked~~~l~el~ILvD~De~gyLLQ 333 (381)
T KOG0638|consen 254 YVEYHGGAGVQHIALNTEDIIEAIRGLRARGGEFLSPPSTYYQNLKERLSTSIRKVKEDIKLLEELGILVDFDENGYLLQ 333 (381)
T ss_pred HHHhcCCCceeeeeecchHHHHHHHHHHhcCCccccCCHHHHHhHHHHhhhhhhhhhccHHHHHHcCeEEecCCCcEEee
Confidence 3368899999999999999999999999999877664421 0 0012233477899999
Q ss_pred EEEeCC--CC-------CCceeEEEEcCCHHHH
Q 024414 221 LLERGP--TP-------EPLCQVMLRVGDLDRS 244 (268)
Q Consensus 221 l~e~~~--~~-------~~l~~v~L~v~d~~~s 244 (268)
++..+- .| .+-.|-.+-.+|+.+.
T Consensus 334 IFTKplqdrpTlFlEiIQR~n~~GFGaGNfkaL 366 (381)
T KOG0638|consen 334 IFTKPLQDRPTLFLEIIQRQNHEGFGAGNFKAL 366 (381)
T ss_pred eeccccCCCchHHHHHHHHhcccccCcccHHHH
Confidence 997762 22 2334555555665544
No 104
>PLN02367 lactoylglutathione lyase
Probab=97.59 E-value=8.2e-05 Score=64.50 Aligned_cols=37 Identities=41% Similarity=0.700 Sum_probs=34.6
Q ss_pred CceeEEEEcCCHHHHHHHHHHhcCCeEeeeecCCCCC
Q 024414 230 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYK 266 (268)
Q Consensus 230 ~l~~v~L~v~d~~~s~~FY~~vlG~~~~~~~~~p~~~ 266 (268)
.+.|++|+|.|++++++||+++|||++.++.++|+.+
T Consensus 75 ~~~HtmlRVkDle~Sl~FYt~vLGm~ll~r~d~pe~~ 111 (233)
T PLN02367 75 IMQQTMYRIKDPKASLDFYSRVLGMSLLKRLDFPEMK 111 (233)
T ss_pred EEEEEEEEeCCHHHHHHHHHHhcCCEEeEEEecCCCc
Confidence 5789999999999999999999999999999999765
No 105
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=97.57 E-value=0.0017 Score=51.20 Aligned_cols=89 Identities=25% Similarity=0.372 Sum_probs=64.2
Q ss_pred CeeEEEEEECCHHHHHHHHHHcCCeEeeCCccc----------CCCCeEEEEEECCCC-CEEEEEEeCCC----------
Q 024414 169 GFGHFGIAVDDVAKTVELIKAKGGKVTREPGPV----------KGGNTVIAFIEDPDG-YKFELLERGPT---------- 227 (268)
Q Consensus 169 g~~hi~f~V~Did~~~~~L~~~G~~i~~~p~~~----------~~G~~~~~~~~DPdG-~~iEl~e~~~~---------- 227 (268)
++.|+++.|.|++++.+...+.|.++....... +.+..+..++..|+| ..+||++...+
T Consensus 3 ~i~Hi~i~v~Dl~~s~~FY~~LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~iel~~~~~~~~~~~~~~~~ 82 (142)
T cd08353 3 RMDNVGIVVRDLEAAIAFFLELGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTPDGHSRLELSKFHHPAVIADHRPAP 82 (142)
T ss_pred eeeeEEEEeCCHHHHHHHHHHcCCEEccccccChHHHHHhcCCCCceEEEEEEeCCCCCceEEEEEecCCCCcCcCCCCC
Confidence 578999999999999999999998765432110 112345556666665 57999884311
Q ss_pred --CCCceeEEEEcCCHHHHHHHHHHhcCCeEee
Q 024414 228 --PEPLCQVMLRVGDLDRSINFYEQAFGMELLR 258 (268)
Q Consensus 228 --~~~l~~v~L~v~d~~~s~~FY~~vlG~~~~~ 258 (268)
...+.|+.+.|.|++++.+...+ .|.++..
T Consensus 83 ~~~~g~~hia~~v~d~d~~~~~l~~-~G~~~~~ 114 (142)
T cd08353 83 VNALGLRRVMFAVDDIDARVARLRK-HGAELVG 114 (142)
T ss_pred CCCCCceEEEEEeCCHHHHHHHHHH-CCCceeC
Confidence 13477999999999999999977 6877654
No 106
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=97.41 E-value=0.00022 Score=57.32 Aligned_cols=40 Identities=55% Similarity=0.940 Sum_probs=34.1
Q ss_pred CCCCCceeEEEEcCCHHHHHHHHHHhcCCeEeeeecCCCC
Q 024414 226 PTPEPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEY 265 (268)
Q Consensus 226 ~~~~~l~~v~L~v~d~~~s~~FY~~vlG~~~~~~~~~p~~ 265 (268)
....+++|+.|.|.|++++.+||+++|||++..+.+.|+.
T Consensus 13 ~~~~~i~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~ 52 (150)
T TIGR00068 13 TKKRRLLHTMLRVGDLDKSLDFYTEVLGMKLLRKRDFPEM 52 (150)
T ss_pred cCCceEEEEEEEecCHHHHHHHHHHhcCCEEEEEeccCCC
Confidence 3456799999999999999999999999998776666654
No 107
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=97.39 E-value=0.0002 Score=60.24 Aligned_cols=46 Identities=33% Similarity=0.529 Sum_probs=37.5
Q ss_pred EEEEeCCCC---CCceeEEEEcCCHHHHHHHHHHhcCCeEeeeecCCCC
Q 024414 220 ELLERGPTP---EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEY 265 (268)
Q Consensus 220 El~e~~~~~---~~l~~v~L~v~d~~~s~~FY~~vlG~~~~~~~~~p~~ 265 (268)
.++++.+.+ ..+.|+.|+|.|++++++||+++|||++..+.++|+.
T Consensus 14 ~~~~~~~~~~~~~~~~Ht~i~V~Dle~Si~FY~~vLG~~~~~r~~~~~~ 62 (185)
T PLN03042 14 GLCGNPDEATKGYIMQQTMFRIKDPKASLDFYSRVLGMSLLKRLDFPEM 62 (185)
T ss_pred ccccCCCCCCCCcEEEEEEEeeCCHHHHHHHHHhhcCCEEEEEEEcCCC
Confidence 345555443 4689999999999999999999999999888777764
No 108
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=97.29 E-value=0.014 Score=45.23 Aligned_cols=96 Identities=19% Similarity=0.348 Sum_probs=55.2
Q ss_pred CCHHHHHHHHHhhcCCEE-EEEecCC------CCceeEEEEeeCCCCceEEEEEeeccCCCCCCCCCCeeEEEEEECC--
Q 024414 109 GDLDRTIKFYTECLGMKL-LRKRDIP------EEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDD-- 179 (268)
Q Consensus 109 ~Dle~a~~FY~~vLG~~~-~~~~~~~------~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~V~D-- 179 (268)
.+.++|.+||+++||-.. ......+ ....-.+.+..++ ..+...... +....++++ .+++.++|
T Consensus 11 g~a~eA~~fY~~vf~~~~i~~~~~~~~~~~~~~~~v~ha~l~i~g----~~lm~~D~~--~~~~~~~~~-sl~i~~~~~e 83 (116)
T PF06983_consen 11 GNAEEALEFYKEVFGGSEIMTFGDYPDDEPEWKDKVMHAELTIGG----QKLMASDGG--PDFPFGNNI-SLCIECDDEE 83 (116)
T ss_dssp S-HHHHHHHHHHHSTTEEEEEEEE-TTTCTTHTTSEEEEEEEETT----EEEEEEEES--TS----TTE-EEEEEESSHH
T ss_pred CCHHHHHHHHHHHcCCCEEEEEeECCCCCCCCCCcEEEEEEEECC----eEEEEECCC--CCCCCCCcE-EEEEEcCCHH
Confidence 699999999999999533 3222221 1223344454442 223333322 333344554 78999987
Q ss_pred -HHHHHHHHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEEE
Q 024414 180 -VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 222 (268)
Q Consensus 180 -id~~~~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~ 222 (268)
+++++++|.+-|- +.. ....+.|..|..|.|+
T Consensus 84 e~~~~f~~Ls~gG~----------~~~-~~G~v~DkFGv~Wqiv 116 (116)
T PF06983_consen 84 EIDRIFDKLSEGGQ----------WFS-RYGWVTDKFGVSWQIV 116 (116)
T ss_dssp HHHHHHHHHHTTTE----------TCC-EEEEEE-TTS-EEEEE
T ss_pred HHHHHHHHHHcCCC----------ccc-eeEEEEeCCCCEEEeC
Confidence 5667778877664 223 7789999999999885
No 109
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=97.28 E-value=0.0055 Score=50.09 Aligned_cols=88 Identities=20% Similarity=0.213 Sum_probs=63.9
Q ss_pred CCeeEEEEEECCHHHHHHHHHH-cCCeEeeCCcc-----------------cCCCCeEEEEEECCCCCEEEEEEeCCCC-
Q 024414 168 TGFGHFGIAVDDVAKTVELIKA-KGGKVTREPGP-----------------VKGGNTVIAFIEDPDGYKFELLERGPTP- 228 (268)
Q Consensus 168 ~g~~hi~f~V~Did~~~~~L~~-~G~~i~~~p~~-----------------~~~G~~~~~~~~DPdG~~iEl~e~~~~~- 228 (268)
.++.|+++.|.|+++..+..++ .|.++..++.. .++.....+++..++|..||+++.....
T Consensus 3 ~~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ieL~~~~~~~~ 82 (162)
T TIGR03645 3 RTFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGDRIGVELFEFKNQEN 82 (162)
T ss_pred ceEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCCCCcEEEEeccCCCC
Confidence 4688999999999999999977 79876532110 0111234566666778889999876321
Q ss_pred ---------CCceeEEEEcCCHHHHHHHHHHhcCCeE
Q 024414 229 ---------EPLCQVMLRVGDLDRSINFYEQAFGMEL 256 (268)
Q Consensus 229 ---------~~l~~v~L~v~d~~~s~~FY~~vlG~~~ 256 (268)
..+.|+.+.|.|+++..+..++ .|.++
T Consensus 83 ~~~~~~~~~~g~~Hla~~v~dida~~~~l~~-~G~~~ 118 (162)
T TIGR03645 83 PEDNFEYWKTGVFHFCVQDPDVEGLAERIVA-AGGKK 118 (162)
T ss_pred CCcccccccccceEEEEEcCCHHHHHHHHHH-cCCcc
Confidence 3477999999999999999988 46543
No 110
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=97.28 E-value=0.0071 Score=45.80 Aligned_cols=88 Identities=23% Similarity=0.257 Sum_probs=62.4
Q ss_pred CeeEEEEEECCHHHHHHHHHH-cCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEeCCC--------CCCceeEEEEcC
Q 024414 169 GFGHFGIAVDDVAKTVELIKA-KGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT--------PEPLCQVMLRVG 239 (268)
Q Consensus 169 g~~hi~f~V~Did~~~~~L~~-~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~~~~--------~~~l~~v~L~v~ 239 (268)
++.|+++.|+|++++.+..++ .|..+...... +.+....+.+..+++..++++..... ...+.|+.+.|.
T Consensus 3 ~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~-~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~g~~h~~~~v~ 81 (125)
T cd08352 3 GIHHVAIICSDYEKSKEFYVEILGFKVIREVYR-PERGSYKLDLLLNGGYQLELFSFPNPPERPSYPEACGLRHLAFSVE 81 (125)
T ss_pred ccceEEEEcCCHHHHHHHHHHhcCCEEeeeeec-CCCCcEEEEEecCCCcEEEEEEcCCCCCCCCCCcCCCceEEEEEeC
Confidence 678999999999999999985 89887543211 12122334455567778888764421 235679999999
Q ss_pred CHHHHHHHHHHhcCCeEee
Q 024414 240 DLDRSINFYEQAFGMELLR 258 (268)
Q Consensus 240 d~~~s~~FY~~vlG~~~~~ 258 (268)
|++++.+..++ .|+++..
T Consensus 82 d~~~~~~~l~~-~G~~~~~ 99 (125)
T cd08352 82 DIEAAVKHLKA-KGVEVEP 99 (125)
T ss_pred CHHHHHHHHHH-cCCcccc
Confidence 99999888876 6877654
No 111
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=97.26 E-value=0.006 Score=46.59 Aligned_cols=88 Identities=24% Similarity=0.346 Sum_probs=63.6
Q ss_pred eeEEEEEECCHHHHHHHHHH-cCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEeCCC-----------CCCceeEEEE
Q 024414 170 FGHFGIAVDDVAKTVELIKA-KGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT-----------PEPLCQVMLR 237 (268)
Q Consensus 170 ~~hi~f~V~Did~~~~~L~~-~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~~~~-----------~~~l~~v~L~ 237 (268)
+.|++|.|+|++++.+...+ .|..........+++.....++.. +|..++|+++... ...+.|+.+.
T Consensus 1 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~-~~~~l~l~~~~~~~~~~~~~~~~~~~g~~h~~f~ 79 (128)
T cd07249 1 IDHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLGL-GNVQIELIEPLDDDSPIAKFLEKRGEGLHHIAFE 79 (128)
T ss_pred CcEEEEEeCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEEc-CCEEEEEEEECCCCCcHHHHHhcCCCceEEEEEE
Confidence 35999999999999999987 888765432222122334455554 6888999976532 2346899999
Q ss_pred cCCHHHHHHHHHHhcCCeEeee
Q 024414 238 VGDLDRSINFYEQAFGMELLRK 259 (268)
Q Consensus 238 v~d~~~s~~FY~~vlG~~~~~~ 259 (268)
|.|++++.+...+ .|.++...
T Consensus 80 v~d~~~~~~~l~~-~G~~~~~~ 100 (128)
T cd07249 80 VDDIDAALARLKA-QGVRLLQE 100 (128)
T ss_pred eCCHHHHHHHHHH-CCCeeecc
Confidence 9999999999977 68876554
No 112
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=97.11 E-value=0.00049 Score=52.95 Aligned_cols=31 Identities=19% Similarity=0.300 Sum_probs=28.1
Q ss_pred CCceeEEEEcCCHHHHHHHHHHhcCCeEeee
Q 024414 229 EPLCQVMLRVGDLDRSINFYEQAFGMELLRK 259 (268)
Q Consensus 229 ~~l~~v~L~v~d~~~s~~FY~~vlG~~~~~~ 259 (268)
.+++|+.|.|.|++++.+||+++|||++..+
T Consensus 1 ~~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~ 31 (120)
T cd07252 1 KSLGYLGVESSDLDAWRRFATDVLGLQVGDR 31 (120)
T ss_pred CcccEEEEEeCCHHHHHHHHHhccCceeccC
Confidence 3689999999999999999999999997655
No 113
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=97.08 E-value=0.011 Score=44.85 Aligned_cols=88 Identities=17% Similarity=0.257 Sum_probs=56.8
Q ss_pred CeeEEEEEECCHHHHHHHHHH-cCCeEeeCCcccCCCCeEEEEEECC---CCCEEEEEEeCCC-------CCCceeEEEE
Q 024414 169 GFGHFGIAVDDVAKTVELIKA-KGGKVTREPGPVKGGNTVIAFIEDP---DGYKFELLERGPT-------PEPLCQVMLR 237 (268)
Q Consensus 169 g~~hi~f~V~Did~~~~~L~~-~G~~i~~~p~~~~~G~~~~~~~~DP---dG~~iEl~e~~~~-------~~~l~~v~L~ 237 (268)
|+.|+++.|+|++++.+...+ .|..................++.+. .|..++|++.... ...+.|+.+.
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~hi~f~ 80 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEWPDAGPKGRRGPGQIHHIAFS 80 (126)
T ss_pred CcccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEecCCCCCCCCCCCCcEEEEEEE
Confidence 467999999999999999986 6987654422221112334555554 6778999876432 2347899999
Q ss_pred cCCHHHHHHHHHHh--cCCeE
Q 024414 238 VGDLDRSINFYEQA--FGMEL 256 (268)
Q Consensus 238 v~d~~~s~~FY~~v--lG~~~ 256 (268)
+.|.+...+.|.++ .|.++
T Consensus 81 v~~~~~~~~~~~~~~~~g~~~ 101 (126)
T cd08346 81 VPSEASLDAWRERLRAAGVPV 101 (126)
T ss_pred cCCHHHHHHHHHHHHHcCCcc
Confidence 98664444444443 45554
No 114
>PRK11478 putative lyase; Provisional
Probab=97.02 E-value=0.00074 Score=52.20 Aligned_cols=30 Identities=20% Similarity=0.345 Sum_probs=27.6
Q ss_pred CCceeEEEEcCCHHHHHHHHHHhcCCeEee
Q 024414 229 EPLCQVMLRVGDLDRSINFYEQAFGMELLR 258 (268)
Q Consensus 229 ~~l~~v~L~v~d~~~s~~FY~~vlG~~~~~ 258 (268)
.+++|+.|.|.|++++.+||+++|||++..
T Consensus 5 ~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~ 34 (129)
T PRK11478 5 KQVHHIAIIATDYAVSKAFYCDILGFTLQS 34 (129)
T ss_pred ceecEEEEEcCCHHHHHHHHHHHhCCEecc
Confidence 568999999999999999999999999754
No 115
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=97.01 E-value=0.00057 Score=50.73 Aligned_cols=33 Identities=36% Similarity=0.443 Sum_probs=28.6
Q ss_pred ceeEEEEcCCHHHHHHHHHHhcCCeEeeeecCC
Q 024414 231 LCQVMLRVGDLDRSINFYEQAFGMELLRKRDNP 263 (268)
Q Consensus 231 l~~v~L~v~d~~~s~~FY~~vlG~~~~~~~~~p 263 (268)
++|+.|.|.|++++.+||+++|||++..+.+.+
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~ 33 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPFL 33 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCCC
Confidence 589999999999999999999999977654443
No 116
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=96.97 E-value=0.00083 Score=51.58 Aligned_cols=32 Identities=28% Similarity=0.474 Sum_probs=28.8
Q ss_pred CCceeEEEEcCCHHHHHHHHHHhcCCeEeeee
Q 024414 229 EPLCQVMLRVGDLDRSINFYEQAFGMELLRKR 260 (268)
Q Consensus 229 ~~l~~v~L~v~d~~~s~~FY~~vlG~~~~~~~ 260 (268)
.++.|+.|.|.|++++.+||+++|||++....
T Consensus 3 ~~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~ 34 (122)
T cd07265 3 LRPGHVQLRVLDLEEAIKHYREVLGLDEVGRD 34 (122)
T ss_pred ceEeEEEEEeCCHHHHHHHHHhccCCEeeeec
Confidence 46899999999999999999999999986654
No 117
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=96.94 E-value=0.001 Score=51.05 Aligned_cols=33 Identities=21% Similarity=0.328 Sum_probs=29.4
Q ss_pred CCCceeEEEEcCCHHHHHHHHHHhcCCeEeeee
Q 024414 228 PEPLCQVMLRVGDLDRSINFYEQAFGMELLRKR 260 (268)
Q Consensus 228 ~~~l~~v~L~v~d~~~s~~FY~~vlG~~~~~~~ 260 (268)
...+.|+.|.|.|++++.+||+++|||++..+.
T Consensus 4 i~~i~hv~l~v~dl~~a~~FY~~~lG~~~~~~~ 36 (121)
T cd09013 4 IAHLAHVELLTPKPEESLWFFTDVLGLEETGRE 36 (121)
T ss_pred ccEeeEEEEEeCCHHHHHHHHHhCcCCEEEeec
Confidence 357899999999999999999999999987653
No 118
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=96.86 E-value=0.0013 Score=51.79 Aligned_cols=34 Identities=29% Similarity=0.438 Sum_probs=30.1
Q ss_pred CCCCceeEEEEcCCHHHHHHHHHHhcCCeEeeee
Q 024414 227 TPEPLCQVMLRVGDLDRSINFYEQAFGMELLRKR 260 (268)
Q Consensus 227 ~~~~l~~v~L~v~d~~~s~~FY~~vlG~~~~~~~ 260 (268)
.+..+.|..|.+.|++++.+||++||||+..+..
T Consensus 6 ~~~~i~w~Ei~~~D~~ra~~FY~~vFgW~~~~~~ 39 (127)
T COG3324 6 EKGTIVWFELPVSDLERAKAFYEKVFGWTFEDYF 39 (127)
T ss_pred cCCccEEEeeecCCHHHHHHHHHHhhCceecccc
Confidence 3567899999999999999999999999977664
No 119
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=96.84 E-value=0.016 Score=48.77 Aligned_cols=89 Identities=16% Similarity=0.139 Sum_probs=65.9
Q ss_pred CeeEEEEEEC--CHHHHHHHHHH-cCCeEeeCCcc-cCCCCeEEEEEECCCC-CEEEEEEeCCC--------------CC
Q 024414 169 GFGHFGIAVD--DVAKTVELIKA-KGGKVTREPGP-VKGGNTVIAFIEDPDG-YKFELLERGPT--------------PE 229 (268)
Q Consensus 169 g~~hi~f~V~--Did~~~~~L~~-~G~~i~~~p~~-~~~G~~~~~~~~DPdG-~~iEl~e~~~~--------------~~ 229 (268)
++.|+++.|+ |++++++...+ .|......... .+.++.+..++..|+| ..++|.++.+. ..
T Consensus 3 ~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~~g~i~l~L~~~~~~~~~s~~~~fl~~~~G~ 82 (191)
T cd07250 3 RIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASPDGKIRIPLNEPASGKRKSQIQEFLEYYGGA 82 (191)
T ss_pred eeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECCCCcEEEEEecCCCCCCccHHHHHHHHhCCC
Confidence 5779999999 99999999866 88876543211 1123456677888765 56888886651 24
Q ss_pred CceeEEEEcCCHHHHHHHHHHhcCCeEee
Q 024414 230 PLCQVMLRVGDLDRSINFYEQAFGMELLR 258 (268)
Q Consensus 230 ~l~~v~L~v~d~~~s~~FY~~vlG~~~~~ 258 (268)
.+.|+.+.|.|++++.+-.++ -|.+...
T Consensus 83 Gv~HIAf~vdDI~~~~~~L~~-~Gv~~l~ 110 (191)
T cd07250 83 GVQHIALATDDIFATVAALRA-RGVEFLP 110 (191)
T ss_pred ceeEEEEECCCHHHHHHHHHH-cCCeecc
Confidence 678999999999999999977 6877653
No 120
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=96.83 E-value=0.0011 Score=51.54 Aligned_cols=31 Identities=19% Similarity=0.389 Sum_probs=28.2
Q ss_pred CCceeEEEEcCCHHHHHHHHHHhcCCeEeee
Q 024414 229 EPLCQVMLRVGDLDRSINFYEQAFGMELLRK 259 (268)
Q Consensus 229 ~~l~~v~L~v~d~~~s~~FY~~vlG~~~~~~ 259 (268)
.++.|+.|.|.|++++.+||+++|||++..+
T Consensus 5 ~~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~ 35 (124)
T cd08361 5 QDIAYVRLGTRDLAGATRFATDILGLQVAER 35 (124)
T ss_pred EEeeEEEEeeCCHHHHHHHHHhccCceeccC
Confidence 4689999999999999999999999997654
No 121
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=96.82 E-value=0.031 Score=42.19 Aligned_cols=88 Identities=23% Similarity=0.304 Sum_probs=62.4
Q ss_pred eeEEEEEECCHHHHHHHHHH-cCCeEeeCCcccCCCCeEEEEEECCC---CCEEEEEEeCCC------CCCceeEEEEcC
Q 024414 170 FGHFGIAVDDVAKTVELIKA-KGGKVTREPGPVKGGNTVIAFIEDPD---GYKFELLERGPT------PEPLCQVMLRVG 239 (268)
Q Consensus 170 ~~hi~f~V~Did~~~~~L~~-~G~~i~~~p~~~~~G~~~~~~~~DPd---G~~iEl~e~~~~------~~~l~~v~L~v~ 239 (268)
+.|+++.|+|++++.+...+ .|.+....... +.+....+++..++ +..+++.+..+. ...+.|+.+.+.
T Consensus 1 ~~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~v~ 79 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYTDVLGMKLLRRKDF-PEGKFTLVFLGYPDEDSEGVLELTYNWGTEEPYDNGNGFGHLAFAVD 79 (121)
T ss_pred CeeEEEEecCcHHHHHHHHhccCCeEEEEEec-CCCceEEEEecCCCCCCccEEEEEecCCCCCCcCCCCCeEEEEEEeC
Confidence 36999999999999999987 49887643222 22223445555544 577888765322 246789999999
Q ss_pred CHHHHHHHHHHhcCCeEeee
Q 024414 240 DLDRSINFYEQAFGMELLRK 259 (268)
Q Consensus 240 d~~~s~~FY~~vlG~~~~~~ 259 (268)
|++++.+-..+ .|.++...
T Consensus 80 did~~~~~l~~-~G~~~~~~ 98 (121)
T cd07233 80 DVYAACERLEE-MGVEVTKP 98 (121)
T ss_pred CHHHHHHHHHH-CCCEEeeC
Confidence 99999888865 88887654
No 122
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=96.79 E-value=0.0017 Score=49.45 Aligned_cols=31 Identities=29% Similarity=0.516 Sum_probs=27.8
Q ss_pred CCceeEEEEcCCHHHHHHHHHHhcCCeEeee
Q 024414 229 EPLCQVMLRVGDLDRSINFYEQAFGMELLRK 259 (268)
Q Consensus 229 ~~l~~v~L~v~d~~~s~~FY~~vlG~~~~~~ 259 (268)
.+|+|+.|.|.|++++.+||+++|||+....
T Consensus 2 ~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~ 32 (120)
T cd08362 2 TALRGVGLGVPDLAAAAAFYREVWGLSVVAE 32 (120)
T ss_pred ceeeEEEEecCCHHHHHHHHHhCcCcEEEEe
Confidence 3689999999999999999999999997544
No 123
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=96.75 E-value=0.002 Score=48.65 Aligned_cols=31 Identities=29% Similarity=0.654 Sum_probs=28.5
Q ss_pred CceeEEEEcCCHHHHHHHHHHhcCCeEeeee
Q 024414 230 PLCQVMLRVGDLDRSINFYEQAFGMELLRKR 260 (268)
Q Consensus 230 ~l~~v~L~v~d~~~s~~FY~~vlG~~~~~~~ 260 (268)
+++|+.|.|.|++++.+||+++|||++....
T Consensus 2 ~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~ 32 (117)
T cd07240 2 RIAYAELEVPDLERALEFYTDVLGLTVLDRD 32 (117)
T ss_pred ceeEEEEecCCHHHHHHHHHhccCcEEEeec
Confidence 5899999999999999999999999987654
No 124
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=96.68 E-value=0.027 Score=45.77 Aligned_cols=82 Identities=21% Similarity=0.300 Sum_probs=54.9
Q ss_pred CeeEEEEEECCHHHHHHHHHH-cCCeEeeCCcccCCCCeEEEEEEC--CCCCEEEEEEeCCC------CCCceeEEEEcC
Q 024414 169 GFGHFGIAVDDVAKTVELIKA-KGGKVTREPGPVKGGNTVIAFIED--PDGYKFELLERGPT------PEPLCQVMLRVG 239 (268)
Q Consensus 169 g~~hi~f~V~Did~~~~~L~~-~G~~i~~~p~~~~~G~~~~~~~~D--PdG~~iEl~e~~~~------~~~l~~v~L~v~ 239 (268)
|+.||++.|.|+++..+...+ .|.++..... + ...++.. .++..+++++.... ...+.|+.+.|.
T Consensus 1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~----~--~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~Hiaf~v~ 74 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLTDVLGFREVGEEG----D--RVRLEEGGGGPGAVVDVLEEPDQPRGRPGAGTVHHVAFRVP 74 (157)
T ss_pred CcccEEEEeCCHHHHHHHHHHhcCCEEEeeeC----C--EEEEEecCCCCCCEEEEEeCCCCCCCcccCCceEEEEEECC
Confidence 578999999999999999976 5887753311 1 2223332 35889999886421 246789999999
Q ss_pred CHHHHHHHHHHh--cCCeE
Q 024414 240 DLDRSINFYEQA--FGMEL 256 (268)
Q Consensus 240 d~~~s~~FY~~v--lG~~~ 256 (268)
|.+...++|.++ .|+.+
T Consensus 75 d~~dvd~~~~~L~~~Gv~~ 93 (157)
T cd08347 75 DDEELEAWKERLEALGLPV 93 (157)
T ss_pred CHHHHHHHHHHHHHCCCCc
Confidence 854444444444 46654
No 125
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=96.65 E-value=0.034 Score=43.54 Aligned_cols=84 Identities=20% Similarity=0.232 Sum_probs=60.4
Q ss_pred CCeeEEEEEECCHHHHHHHHHH-cCCeEeeCCcccCCCCeEEEEEECC---CCCEEEEEEeCCCCCCceeEEEEcCCHHH
Q 024414 168 TGFGHFGIAVDDVAKTVELIKA-KGGKVTREPGPVKGGNTVIAFIEDP---DGYKFELLERGPTPEPLCQVMLRVGDLDR 243 (268)
Q Consensus 168 ~g~~hi~f~V~Did~~~~~L~~-~G~~i~~~p~~~~~G~~~~~~~~DP---dG~~iEl~e~~~~~~~l~~v~L~v~d~~~ 243 (268)
..+.|+++.|+|+++..+..++ .|.++..... . ...++... ..+.+.+.........+.|+.+.|.|+++
T Consensus 2 ~~l~hi~l~v~dl~~s~~FY~~vlGl~~~~~~~----~--~~~~~~~~~~~~~~~i~l~~~~~~~~g~~hiaf~v~d~~~ 75 (134)
T cd08360 2 RRLGHVVLFVPDVEAAEAFYRDRLGFRVSDRFK----G--RGAFLRAAGGGDHHNLFLIKTPAPMAGFHHAAFEVGDIDE 75 (134)
T ss_pred ceeeEEEEEcCCHHHHHHHHHHhcCCEEEEEec----C--cEEEEECCCCCCCcEEEEecCCCCCCcceEEEEEeCCHHH
Confidence 3578999999999999999876 6887653311 1 12455543 23567666554444789999999999999
Q ss_pred HHHHHHHh--cCCeEe
Q 024414 244 SINFYEQA--FGMELL 257 (268)
Q Consensus 244 s~~FY~~v--lG~~~~ 257 (268)
..+++..+ .|.++.
T Consensus 76 ~~~~~~~l~~~G~~~~ 91 (134)
T cd08360 76 VMLGGNHMLRAGYQTG 91 (134)
T ss_pred HHHHHHHHHHcCCccc
Confidence 99988877 666654
No 126
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=96.60 E-value=0.072 Score=40.26 Aligned_cols=88 Identities=17% Similarity=0.227 Sum_probs=55.6
Q ss_pred eeEEEEEECCHHHHHHHHHH-cCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEeCC--------CCCCceeEEEEcCC
Q 024414 170 FGHFGIAVDDVAKTVELIKA-KGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP--------TPEPLCQVMLRVGD 240 (268)
Q Consensus 170 ~~hi~f~V~Did~~~~~L~~-~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~~~--------~~~~l~~v~L~v~d 240 (268)
+.|+++.|+|+++..+...+ .|.+....-.....+ ....++.-.+|..+++++... ....+.|+.+.|.|
T Consensus 2 ~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~hi~f~v~~ 80 (125)
T cd07241 2 IEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKG-FESYFLSFDDGARLELMTRPDIAPSPNEGERTGWAHLAFSVGS 80 (125)
T ss_pred ceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCC-ceEEEEecCCCcEEEEEcCcccCCCcccCCCCceEEEEEECCC
Confidence 46999999999999998887 577653221111112 223344444678899986432 12357899999977
Q ss_pred HHHHHHHHHHh--cCCeEee
Q 024414 241 LDRSINFYEQA--FGMELLR 258 (268)
Q Consensus 241 ~~~s~~FY~~v--lG~~~~~ 258 (268)
.+...++|+++ .|.++..
T Consensus 81 ~~~v~~~~~~l~~~g~~~~~ 100 (125)
T cd07241 81 KEAVDELTERLRADGYLIIG 100 (125)
T ss_pred HHHHHHHHHHHHHCCCEEEe
Confidence 65555555554 6766554
No 127
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=96.59 E-value=0.0025 Score=48.69 Aligned_cols=31 Identities=35% Similarity=0.513 Sum_probs=27.9
Q ss_pred CCceeEEEEcCCHHHHHHHHHHhcCCeEeee
Q 024414 229 EPLCQVMLRVGDLDRSINFYEQAFGMELLRK 259 (268)
Q Consensus 229 ~~l~~v~L~v~d~~~s~~FY~~vlG~~~~~~ 259 (268)
.++.|+.|.|.|++++.+||+++|||++...
T Consensus 3 ~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~ 33 (121)
T cd07266 3 LRLGHVELRVTDLEKSREFYVDVLGLVETEE 33 (121)
T ss_pred ceeeEEEEEcCCHHHHHHHHHhccCCEEecc
Confidence 3689999999999999999999999997644
No 128
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=96.56 E-value=0.041 Score=39.88 Aligned_cols=83 Identities=24% Similarity=0.359 Sum_probs=63.0
Q ss_pred EEEEEECCHHHHHHHHHH-cCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEeCCC-----CCCceeEEEEcCCHHHHH
Q 024414 172 HFGIAVDDVAKTVELIKA-KGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT-----PEPLCQVMLRVGDLDRSI 245 (268)
Q Consensus 172 hi~f~V~Did~~~~~L~~-~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~~~~-----~~~l~~v~L~v~d~~~s~ 245 (268)
|+.+.|.|+++..+.+.+ .|.+....... +.....++.++ +..++|.+..+. .....|+.+.+.|+++..
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~---~~~~~~~~~~~-~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 76 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGN---GGAEFAVLGLG-GTRLELFEGDEPAPAPSGGGGVHLAFEVDDVDAAY 76 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeecc---CCEEEEEEecC-CceEEEecCCCCCCcccCCCeeEEEEECCCHHHHH
Confidence 789999999999999998 99887654321 22355666665 789999987764 366889999999998888
Q ss_pred HHHHHhcCCeEeee
Q 024414 246 NFYEQAFGMELLRK 259 (268)
Q Consensus 246 ~FY~~vlG~~~~~~ 259 (268)
+-..+ .|..+...
T Consensus 77 ~~l~~-~g~~~~~~ 89 (112)
T cd06587 77 ERLKA-AGVEVLGE 89 (112)
T ss_pred HHHHH-cCCcccCC
Confidence 88766 67665443
No 129
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=96.55 E-value=0.0027 Score=48.94 Aligned_cols=29 Identities=21% Similarity=0.464 Sum_probs=26.7
Q ss_pred CceeEEEEcCCHHHHHHHHHHhcCCeEee
Q 024414 230 PLCQVMLRVGDLDRSINFYEQAFGMELLR 258 (268)
Q Consensus 230 ~l~~v~L~v~d~~~s~~FY~~vlG~~~~~ 258 (268)
.+.|+.|.|.|++++.+||+++|||+...
T Consensus 4 ~~~hv~l~v~Dl~~s~~FY~~~lG~~~~~ 32 (123)
T cd08351 4 TLNHTIVPARDREASAEFYAEILGLPWAK 32 (123)
T ss_pred eEeEEEEEcCCHHHHHHHHHHhcCCEeee
Confidence 57899999999999999999999998755
No 130
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=96.48 E-value=0.0034 Score=47.67 Aligned_cols=30 Identities=27% Similarity=0.551 Sum_probs=26.8
Q ss_pred CCceeEEEEcCCHHHHHHHHHHhcCCeEeee
Q 024414 229 EPLCQVMLRVGDLDRSINFYEQAFGMELLRK 259 (268)
Q Consensus 229 ~~l~~v~L~v~d~~~s~~FY~~vlG~~~~~~ 259 (268)
.++.|+.|.|.|++++.+||++ |||++..+
T Consensus 2 ~~l~hv~l~v~Dl~~s~~FY~~-lGl~~~~~ 31 (113)
T cd07267 2 TDIAHVRFEHPDLDKAERFLTD-FGLEVAAR 31 (113)
T ss_pred cEEEEEEEccCCHHHHHHHHHH-cCCEEEEe
Confidence 3689999999999999999999 99997654
No 131
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=96.48 E-value=0.055 Score=42.46 Aligned_cols=84 Identities=15% Similarity=0.212 Sum_probs=58.7
Q ss_pred eeEEEEEECCHHHHHHHHHH-cCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEeCCC-----------CCCceeEEEE
Q 024414 170 FGHFGIAVDDVAKTVELIKA-KGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT-----------PEPLCQVMLR 237 (268)
Q Consensus 170 ~~hi~f~V~Did~~~~~L~~-~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~~~~-----------~~~l~~v~L~ 237 (268)
+.|++|.|+|++++.+..++ .|+++...... ......++.+ .+..+++.++... ...+.|+.+.
T Consensus 1 ~~Hi~i~V~D~e~s~~FY~~vLGf~~~~~~~~---~~~~~~~~~~-g~~~l~l~~~~~~~~~~~~~~~~~~~g~~hia~~ 76 (136)
T cd08342 1 FDHVEFYVGNAKQLASWFSTKLGFEPVAYHGS---EDKASYLLRQ-GDINFVLNSPLNSFAPVADFLEKHGDGVCDVAFR 76 (136)
T ss_pred CeEEEEEeCCHHHHHHHHHHhcCCeEEEecCC---CceEEEEEEc-CCEEEEEecCCCCCCchHHHHHhcCCceEEEEEE
Confidence 36999999999999999999 99887643221 1123344443 4556777654421 2357799999
Q ss_pred cCCHHHHHHHHHHhcCCeEee
Q 024414 238 VGDLDRSINFYEQAFGMELLR 258 (268)
Q Consensus 238 v~d~~~s~~FY~~vlG~~~~~ 258 (268)
|.|++++.+-..+ .|.++..
T Consensus 77 V~Dvda~~~~l~~-~G~~v~~ 96 (136)
T cd08342 77 VDDAAAAYERAVA-RGAKPVQ 96 (136)
T ss_pred eCCHHHHHHHHHH-cCCeEcc
Confidence 9999999988866 7777653
No 132
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=96.47 E-value=0.06 Score=40.10 Aligned_cols=86 Identities=17% Similarity=0.196 Sum_probs=61.4
Q ss_pred EEEEEECCHHHHHHHHHH-cCCeEeeCCcccCCCCeEEEEEECCCC--CEEEEEEeCCC-------CCCceeEEEEcCCH
Q 024414 172 HFGIAVDDVAKTVELIKA-KGGKVTREPGPVKGGNTVIAFIEDPDG--YKFELLERGPT-------PEPLCQVMLRVGDL 241 (268)
Q Consensus 172 hi~f~V~Did~~~~~L~~-~G~~i~~~p~~~~~G~~~~~~~~DPdG--~~iEl~e~~~~-------~~~l~~v~L~v~d~ 241 (268)
|+++.|.|++++.+...+ .|.++....... . +...+.+.++++ ..+++.+.... .....|+.+.|.|+
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~-~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~di 78 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMG-G-GFRWVTVAPPGSPETSLVLAPPANPAAMSGLQPGGTPGLVLATDDI 78 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccC-C-CcEEEEEeCCCCCeeEEEEeCCCCccccccccCCCceEEEEEehHH
Confidence 789999999999999987 898876442211 2 234556666654 45666544322 24578999999999
Q ss_pred HHHHHHHHHhcCCeEeeee
Q 024414 242 DRSINFYEQAFGMELLRKR 260 (268)
Q Consensus 242 ~~s~~FY~~vlG~~~~~~~ 260 (268)
+++.+...+ .|.++....
T Consensus 79 ~~~~~~l~~-~g~~~~~~~ 96 (119)
T cd07263 79 DATYEELKA-RGVEFSEEP 96 (119)
T ss_pred HHHHHHHHh-CCCEEeecc
Confidence 999999976 888776544
No 133
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=96.42 E-value=0.055 Score=43.66 Aligned_cols=90 Identities=21% Similarity=0.353 Sum_probs=60.5
Q ss_pred CCeeEEEEEECCHHHHHHHHHH-cCCeEeeCCcc-cC-CCCeEEEEEE-CCCCCEEEEEEeCCCCCCceeEEEEcCCHHH
Q 024414 168 TGFGHFGIAVDDVAKTVELIKA-KGGKVTREPGP-VK-GGNTVIAFIE-DPDGYKFELLERGPTPEPLCQVMLRVGDLDR 243 (268)
Q Consensus 168 ~g~~hi~f~V~Did~~~~~L~~-~G~~i~~~p~~-~~-~G~~~~~~~~-DPdG~~iEl~e~~~~~~~l~~v~L~v~d~~~ 243 (268)
.++.|+++.|+|++++.+...+ .|..+...... .+ ++....+++. +..++.+.+.+.. ....+.|+.+.|.|.+.
T Consensus 8 ~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~g~~Hiaf~V~d~~~ 86 (154)
T cd07237 8 QGLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNGRHHSLALAEGP-GPKRIHHLMLEVTSLDD 86 (154)
T ss_pred CccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCCCCCCEEEEcCC-CCceeEEEEEEcCCHHH
Confidence 4788999999999999999877 88876432111 11 1122344444 4556667765543 34679999999999887
Q ss_pred HHHHHHHh--cCCeEee
Q 024414 244 SINFYEQA--FGMELLR 258 (268)
Q Consensus 244 s~~FY~~v--lG~~~~~ 258 (268)
..+++.++ .|.++..
T Consensus 87 l~~~~~~L~~~G~~v~~ 103 (154)
T cd07237 87 VGRAYDRVRARGIPIAM 103 (154)
T ss_pred HHHHHHHHHHcCCceec
Confidence 66666654 7777643
No 134
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=96.26 E-value=0.0054 Score=46.39 Aligned_cols=30 Identities=33% Similarity=0.615 Sum_probs=26.4
Q ss_pred CceeEEEEcCCHHHHHHHHHHhcCCeEeeee
Q 024414 230 PLCQVMLRVGDLDRSINFYEQAFGMELLRKR 260 (268)
Q Consensus 230 ~l~~v~L~v~d~~~s~~FY~~vlG~~~~~~~ 260 (268)
+++|+.|.|.|++++.+||+ +|||++..+.
T Consensus 2 ~i~hv~l~v~d~~~s~~FY~-~lG~~~~~~~ 31 (112)
T cd08344 2 SIDHFALEVPDLEVARRFYE-AFGLDVREEG 31 (112)
T ss_pred ceeEEEEecCCHHHHHHHHH-HhCCcEEeec
Confidence 68999999999999999997 6999986543
No 135
>PF15067 FAM124: FAM124 family
Probab=96.21 E-value=0.046 Score=47.10 Aligned_cols=119 Identities=18% Similarity=0.246 Sum_probs=73.2
Q ss_pred cccChhHHhhhc---CceeeEEEEEeC--CHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCCCCceEEEEEeec-c
Q 024414 86 AHESALEWVKKD---KRRMLHVVYRVG--DLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYN-Y 159 (268)
Q Consensus 86 ~~~g~~~~~~~~---~~~l~HV~l~V~--Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~-~ 159 (268)
..+++|-|--.. ..-+-.+.|.|+ |.+.+++||+-+|+-+...+.. + -.+|.-+...+..+++.+..- .
T Consensus 111 l~~~~PlWavr~VH~G~EilRftly~~~~N~~d~vr~Yelil~~~~~~~k~----~-FC~F~lys~~~~~iQlsLK~lp~ 185 (236)
T PF15067_consen 111 LDPGMPLWAVRQVHYGKEILRFTLYCSFDNYEDMVRFYELILQREPTQQKE----D-FCFFTLYSQPGLDIQLSLKQLPP 185 (236)
T ss_pred cCCCCceeEEeeeeccccEEEEEEEecCCCHHHHHHHHHHHhccCcceeeC----C-cEEEEEecCCCeEEEEEeccCCC
Confidence 456778885432 335667889999 9999999999999988754433 2 244444444444455544332 1
Q ss_pred CCCCCCCCCCeeEEEEEECCHHHHHHHHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEE
Q 024414 160 GVDKYDIGTGFGHFGIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFEL 221 (268)
Q Consensus 160 ~~~~~~~g~g~~hi~f~V~Did~~~~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl 221 (268)
+..+ ....-.-+.|.|.|+.+++-.|=.--.+| +.++ --..|||||.|-|
T Consensus 186 ~~~p--~p~esavLqF~V~~igqLvpLLPnpc~PI---------S~~r-WqT~D~DGNkILL 235 (236)
T PF15067_consen 186 GMSP--EPTESAVLQFRVEDIGQLVPLLPNPCSPI---------SETR-WQTEDYDGNKILL 235 (236)
T ss_pred CCCc--ccccceEEEEEecchhhhcccCCCCcccc---------cCCc-ceeeCCCCCEecc
Confidence 2211 12223358999999998876663332222 1222 2478999999843
No 136
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=96.19 E-value=0.12 Score=40.08 Aligned_cols=84 Identities=21% Similarity=0.336 Sum_probs=59.0
Q ss_pred eeEEEEEECCHHHHHHHHHH-cCCeEeeCCcccCCCCeEEEEEECC--CCCEEEEEEeCCC-----CCCceeEEEEcCCH
Q 024414 170 FGHFGIAVDDVAKTVELIKA-KGGKVTREPGPVKGGNTVIAFIEDP--DGYKFELLERGPT-----PEPLCQVMLRVGDL 241 (268)
Q Consensus 170 ~~hi~f~V~Did~~~~~L~~-~G~~i~~~p~~~~~G~~~~~~~~DP--dG~~iEl~e~~~~-----~~~l~~v~L~v~d~ 241 (268)
+.|+.+.|+|++++.+...+ .|.++..... . ....++..+ .+..+.+++.... ...+.|+.+.|.|.
T Consensus 2 i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~---~--~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~f~v~~~ 76 (134)
T cd08348 2 LSHVVLYVRDLEAMVRFYRDVLGFTVTDRGP---L--GGLVFLSRDPDEHHQIALITGRPAAPPPGPAGLNHIAFEVDSL 76 (134)
T ss_pred eeEEEEEecCHHHHHHHHHHhcCCEEEeecc---C--CcEEEEEecCCCceEEEEEecCCCCCCCCCCCceEEEEEeCCH
Confidence 57999999999999999987 8987653321 1 123455543 3567888766532 24678999999999
Q ss_pred HHHHHHHHHh--cCCeEee
Q 024414 242 DRSINFYEQA--FGMELLR 258 (268)
Q Consensus 242 ~~s~~FY~~v--lG~~~~~ 258 (268)
+...++|.++ .|+++..
T Consensus 77 ~~v~~~~~~l~~~G~~~~~ 95 (134)
T cd08348 77 DDLRDLYERLRAAGITPVW 95 (134)
T ss_pred HHHHHHHHHHHHCCCCccc
Confidence 9887777765 4666544
No 137
>PRK06724 hypothetical protein; Provisional
Probab=96.14 E-value=0.0076 Score=47.37 Aligned_cols=29 Identities=31% Similarity=0.611 Sum_probs=25.5
Q ss_pred CCceeEEEEcCCHHHHHHHHHHhc---CCeEe
Q 024414 229 EPLCQVMLRVGDLDRSINFYEQAF---GMELL 257 (268)
Q Consensus 229 ~~l~~v~L~v~d~~~s~~FY~~vl---G~~~~ 257 (268)
..++|+.|.|.|++++.+||+++| ||+..
T Consensus 6 ~~i~Hv~l~V~Dle~s~~FY~~vlg~lg~~~~ 37 (128)
T PRK06724 6 AGIHHIEFWVANLEESISFYDMLFSIIGWRKL 37 (128)
T ss_pred cccCEEEEEeCCHHHHHHHHHHHHhhCCcEEe
Confidence 468999999999999999999966 77764
No 138
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=96.12 E-value=0.082 Score=40.46 Aligned_cols=84 Identities=18% Similarity=0.235 Sum_probs=56.2
Q ss_pred CeeEEEEEECCHHHHHHHHHHc----CCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEeCCCC--------CCceeEEE
Q 024414 169 GFGHFGIAVDDVAKTVELIKAK----GGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPTP--------EPLCQVML 236 (268)
Q Consensus 169 g~~hi~f~V~Did~~~~~L~~~----G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~~~~~--------~~l~~v~L 236 (268)
++.|+++.|+|++++.+...+. |.+..... +.+ ..|+...++..+++++..... ..+.|+.+
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~---~~~---~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~g~~hia~ 74 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEW---EDG---RSWRAGDGGTYLVLQQADGESAGRHDRRNPGLHHLAF 74 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEee---ccC---ceEEecCCceEEEEEecccCCCcccccCCcCeeEEEE
Confidence 4679999999999999999886 88865432 111 133333466788888766422 34789999
Q ss_pred EcCC---HHHHHHHHHHhcCCeEeee
Q 024414 237 RVGD---LDRSINFYEQAFGMELLRK 259 (268)
Q Consensus 237 ~v~d---~~~s~~FY~~vlG~~~~~~ 259 (268)
.|.| ++++.+-.++ .|..+...
T Consensus 75 ~v~~~~d~~~~~~~l~~-~g~~~~~~ 99 (128)
T cd07242 75 RAPSREAVDELYARLAK-RGAEILYA 99 (128)
T ss_pred EcCCHHHHHHHHHHHHH-cCCeEecC
Confidence 9976 4555555544 57776553
No 139
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=96.10 E-value=0.093 Score=42.94 Aligned_cols=87 Identities=9% Similarity=0.127 Sum_probs=54.3
Q ss_pred CeeEEEEEECCHHHHHHHHHH-cCCeEeeCCcccCCCCeEEEEEE-CCCCCEEEEEEeC-CCCCCceeEEEEcCCHHHHH
Q 024414 169 GFGHFGIAVDDVAKTVELIKA-KGGKVTREPGPVKGGNTVIAFIE-DPDGYKFELLERG-PTPEPLCQVMLRVGDLDRSI 245 (268)
Q Consensus 169 g~~hi~f~V~Did~~~~~L~~-~G~~i~~~p~~~~~G~~~~~~~~-DPdG~~iEl~e~~-~~~~~l~~v~L~v~d~~~s~ 245 (268)
++.|++|.|+|++++.+...+ .|.+....... ..+.....++. ++..+.+.+.... .....+.|+.+.|.|.+...
T Consensus 6 ~i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~hiaf~v~~~~~l~ 84 (166)
T cd09014 6 RLDHVNLLASDVDANRDFMEEVLGFRLREQIRL-DNGKEAGAWMSVSNKVHDVAYTRDPAGARGRLHHLAYALDTREDVL 84 (166)
T ss_pred eeeeEEEEcCCHHHHHHHHHHccCCEEEEEEec-CCCceEEEEEeCCCCceeEEEecCCCCCCCCceEEEEECCCHHHHH
Confidence 678999999999999999975 88876433111 11222234444 3334445444322 22456899999999888766
Q ss_pred HHHHHh--cCCeE
Q 024414 246 NFYEQA--FGMEL 256 (268)
Q Consensus 246 ~FY~~v--lG~~~ 256 (268)
++|+++ .|.++
T Consensus 85 ~~~~~l~~~Gv~i 97 (166)
T cd09014 85 RAADIFLENGIFI 97 (166)
T ss_pred HHHHHHHHcCCcc
Confidence 666554 44443
No 140
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=96.03 E-value=0.029 Score=45.22 Aligned_cols=87 Identities=22% Similarity=0.187 Sum_probs=54.8
Q ss_pred eeEEEEEECCHHHHHHHHHH-cCCeEeeCCcccCCCCeEEEEEECCCCC------EEEEEEeCCCCCCceeEEEEcCCHH
Q 024414 170 FGHFGIAVDDVAKTVELIKA-KGGKVTREPGPVKGGNTVIAFIEDPDGY------KFELLERGPTPEPLCQVMLRVGDLD 242 (268)
Q Consensus 170 ~~hi~f~V~Did~~~~~L~~-~G~~i~~~p~~~~~G~~~~~~~~DPdG~------~iEl~e~~~~~~~l~~v~L~v~d~~ 242 (268)
+.||++.|+|+++..+...+ .|.++.........+.....++.-.+|. .+.+.. .....+.|+.+.|.|++
T Consensus 2 i~Hv~l~V~Dle~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--~~~~g~~Hiaf~v~die 79 (153)
T cd07257 2 LGHVVLEVPDFAASFDWYTETFGLKPSDVIYLPGPGNPVAAFLRLDRGEEYVDHHTLALAQ--GPESGVHHAAFEVHDFD 79 (153)
T ss_pred ccEEEEecCCHHHHHHHHHHhcCCeEEeeEecCCCCCcEEEEEecCCCCCcccchHHHHhc--CCCCceeEEEEEcCCHH
Confidence 56999999999999998855 7887654321110122344555543332 122222 22467999999999999
Q ss_pred HHHHHHHH--hcCCeEee
Q 024414 243 RSINFYEQ--AFGMELLR 258 (268)
Q Consensus 243 ~s~~FY~~--vlG~~~~~ 258 (268)
++.+.+.. ..|+++.+
T Consensus 80 ~~~~~~~~L~~~Gv~v~~ 97 (153)
T cd07257 80 AQGLGHDYLREKGYEHVW 97 (153)
T ss_pred HHHHHHHHHHHCCCcEee
Confidence 99855444 26676553
No 141
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=96.01 E-value=0.0086 Score=45.76 Aligned_cols=29 Identities=28% Similarity=0.608 Sum_probs=25.7
Q ss_pred CceeEEEEcCCHHHHHHHHHHhcCCeEee
Q 024414 230 PLCQVMLRVGDLDRSINFYEQAFGMELLR 258 (268)
Q Consensus 230 ~l~~v~L~v~d~~~s~~FY~~vlG~~~~~ 258 (268)
++.++.|.|.|++++.+||+++|||++..
T Consensus 2 ~~~~~~l~v~D~~~a~~FY~~~lG~~~~~ 30 (120)
T cd09011 2 KFKNPLLVVKDIEKSKKFYEKVLGLKVVM 30 (120)
T ss_pred EEEEEEEEECCHHHHHHHHHHhcCCEEee
Confidence 36789999999999999999999998753
No 142
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=95.88 E-value=0.23 Score=37.10 Aligned_cols=84 Identities=19% Similarity=0.147 Sum_probs=59.6
Q ss_pred eEEEEEECCHHHHHHHHHH-cCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEeCCC---CCCceeEEEEcCCHHHHHH
Q 024414 171 GHFGIAVDDVAKTVELIKA-KGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT---PEPLCQVMLRVGDLDRSIN 246 (268)
Q Consensus 171 ~hi~f~V~Did~~~~~L~~-~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~~~~---~~~l~~v~L~v~d~~~s~~ 246 (268)
.|++|.|.|+++..+...+ .|.++..... .. ...+.+...++..+.++...+. .....|+.+.+.|+++..+
T Consensus 2 ~hi~l~v~d~~~s~~FY~~~lG~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~v~di~~~~~ 77 (114)
T cd07247 2 VWFELPTTDPERAKAFYGAVFGWTFEDMGD--GG--GDYAVFSTGGGAVGGLMKAPEPAAGSPPGWLVYFAVDDVDAAAA 77 (114)
T ss_pred EEEEeeCCCHHHHHHHHHhccCceeeeccC--CC--CceEEEEeCCccEEEEecCCCCCCCCCCeEEEEEEeCCHHHHHH
Confidence 5999999999999999987 5987754432 11 2334455444456667766543 3566789999999999999
Q ss_pred HHHHhcCCeEeee
Q 024414 247 FYEQAFGMELLRK 259 (268)
Q Consensus 247 FY~~vlG~~~~~~ 259 (268)
-..+ .|.++...
T Consensus 78 ~l~~-~g~~~~~~ 89 (114)
T cd07247 78 RVEA-AGGKVLVP 89 (114)
T ss_pred HHHH-CCCEEEeC
Confidence 8866 68876544
No 143
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=95.68 E-value=0.21 Score=37.90 Aligned_cols=81 Identities=14% Similarity=0.157 Sum_probs=55.0
Q ss_pred CeeEEEEEECCHHHHHHHHHH-cCCeEeeCCcccCCCCeEEEEEECCC-CCEEEEEEeCCC------CCCceeEEEEcCC
Q 024414 169 GFGHFGIAVDDVAKTVELIKA-KGGKVTREPGPVKGGNTVIAFIEDPD-GYKFELLERGPT------PEPLCQVMLRVGD 240 (268)
Q Consensus 169 g~~hi~f~V~Did~~~~~L~~-~G~~i~~~p~~~~~G~~~~~~~~DPd-G~~iEl~e~~~~------~~~l~~v~L~v~d 240 (268)
.+.|+.+.|+|++++.+...+ .|.++.... + ..+++...+ +..|.+.+.... ...+.|+.+.+.+
T Consensus 2 ~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~-----~--~~~~l~~~~~~~~l~l~~~~~~~~~~~~~~~~~hi~f~v~~ 74 (125)
T cd07255 2 RIGAVTLRVADLERSLAFYQDVLGLEVLERT-----D--STAVLGTGGKRPLLVLEEDPDAPPAPPGATGLYHFAILLPS 74 (125)
T ss_pred EEEEEEEEECCHHHHHHHHHhccCcEEEEcC-----C--CEEEEecCCCeEEEEEEeCCCCCcccCCCCcEEEEEEECCC
Confidence 367999999999999999987 798876441 1 124455444 466777765432 2457899999987
Q ss_pred HHHHHHHHHHhc--CCeE
Q 024414 241 LDRSINFYEQAF--GMEL 256 (268)
Q Consensus 241 ~~~s~~FY~~vl--G~~~ 256 (268)
.+...+++.++. |.+.
T Consensus 75 ~~~v~~~~~~l~~~g~~~ 92 (125)
T cd07255 75 RADLAAALRRLIELGIPL 92 (125)
T ss_pred HHHHHHHHHHHHHcCCce
Confidence 666666665554 5554
No 144
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=95.63 E-value=0.17 Score=38.46 Aligned_cols=76 Identities=18% Similarity=0.132 Sum_probs=52.1
Q ss_pred eeEEEEEECCHHHHHHHHHH----cCCeEeeCCcccCCCCeEEEEEECC-CCCEEEEEEeCC----CCCCceeEEEEcCC
Q 024414 170 FGHFGIAVDDVAKTVELIKA----KGGKVTREPGPVKGGNTVIAFIEDP-DGYKFELLERGP----TPEPLCQVMLRVGD 240 (268)
Q Consensus 170 ~~hi~f~V~Did~~~~~L~~----~G~~i~~~p~~~~~G~~~~~~~~DP-dG~~iEl~e~~~----~~~~l~~v~L~v~d 240 (268)
+.|+.+.|.|++++.+..++ .|....... .+ .. +.+..+ .+..+.+....+ ......|+.+.|.|
T Consensus 1 l~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~----~~-~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~hi~f~v~~ 74 (123)
T cd07262 1 IDHVTLGVNDLERARAFYDAVLAPLGIKRVMED----GP-GA-VGYGKGGGGPDFWVTKPFDGEPATAGNGTHVAFAAPS 74 (123)
T ss_pred CcEEEEecCcHHHHHHHHHHHHhhcCceEEeec----CC-ce-eEeccCCCCceEEEeccccCCCCCCCCceEEEEECCC
Confidence 35999999999999998887 487765332 11 12 344544 366788876543 23446799999998
Q ss_pred HHHHHHHHHHh
Q 024414 241 LDRSINFYEQA 251 (268)
Q Consensus 241 ~~~s~~FY~~v 251 (268)
.+...+++.++
T Consensus 75 ~~~v~~~~~~~ 85 (123)
T cd07262 75 REAVDAFHAAA 85 (123)
T ss_pred HHHHHHHHHHH
Confidence 77777777654
No 145
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=95.62 E-value=0.28 Score=38.19 Aligned_cols=87 Identities=16% Similarity=0.291 Sum_probs=54.2
Q ss_pred CCeeEEEEEECCHHHHHHHHHH-cCCeEeeCCcccCC-CCeEEEEEECCCCCEEEEEEeCCC-CCCceeEEEEcC--CHH
Q 024414 168 TGFGHFGIAVDDVAKTVELIKA-KGGKVTREPGPVKG-GNTVIAFIEDPDGYKFELLERGPT-PEPLCQVMLRVG--DLD 242 (268)
Q Consensus 168 ~g~~hi~f~V~Did~~~~~L~~-~G~~i~~~p~~~~~-G~~~~~~~~DPdG~~iEl~e~~~~-~~~l~~v~L~v~--d~~ 242 (268)
.++.|+++.|+|+++..+...+ .|.+.......... .....++. -.+..+++.+..+. ...+.|+.+.|. |++
T Consensus 3 ~~i~hv~l~V~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~--~~~~~i~l~~~~~~~~~~~~Hiaf~v~~~~ld 80 (131)
T cd08364 3 EGLSHITLIVKDLNKTTAFLQNIFNAREVYSSGDKTFSLSKEKFFL--IGGLWIAIMEGDSLQERTYNHIAFKISDSDVD 80 (131)
T ss_pred ccEeEEEEEeCCHHHHHHHHHHHhCCeeEEecccccccccceeEEE--cCCeEEEEecCCCCCCCCceEEEEEcCHHHHH
Confidence 3688999999999999998877 78765433221110 01111222 23577888765543 235899999997 455
Q ss_pred HHHHHHHHhcCCeEe
Q 024414 243 RSINFYEQAFGMELL 257 (268)
Q Consensus 243 ~s~~FY~~vlG~~~~ 257 (268)
+..+-.++ .|.++.
T Consensus 81 ~~~~~l~~-~gv~~~ 94 (131)
T cd08364 81 EYTERIKA-LGVEMK 94 (131)
T ss_pred HHHHHHHH-CCCEEe
Confidence 55555544 677654
No 146
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=95.58 E-value=0.34 Score=36.36 Aligned_cols=89 Identities=26% Similarity=0.427 Sum_probs=55.5
Q ss_pred CeeEEEEEECCHHHHHHHHHH-cCCeEeeCCc-ccCCCCeEEEEEECCCCCEEEEEEeCCCC-C---------CceeEEE
Q 024414 169 GFGHFGIAVDDVAKTVELIKA-KGGKVTREPG-PVKGGNTVIAFIEDPDGYKFELLERGPTP-E---------PLCQVML 236 (268)
Q Consensus 169 g~~hi~f~V~Did~~~~~L~~-~G~~i~~~p~-~~~~G~~~~~~~~DPdG~~iEl~e~~~~~-~---------~l~~v~L 236 (268)
++.|+++.|.|++++.+...+ .|.+...... ....+.....++...+. .+++......+ . .+.|+.+
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~i~~ 79 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRIGEG-HIELFLNPSPPPRASGHSFPEHGGHHIAF 79 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEESTSS-CEEEEEEESSSSSSEEEHHHSHTSEEEEE
T ss_pred CeEEEEEEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeeccccc-ceeeeeeccccccccccccccccceeEEE
Confidence 578999999999999998888 7888776544 22223334555555554 46665544322 1 2346777
Q ss_pred EcCCHHHHHHHHHHh--cCCeEee
Q 024414 237 RVGDLDRSINFYEQA--FGMELLR 258 (268)
Q Consensus 237 ~v~d~~~s~~FY~~v--lG~~~~~ 258 (268)
.+.+.+...++|+++ .|.++..
T Consensus 80 ~~~~~~dl~~~~~~l~~~g~~~~~ 103 (128)
T PF00903_consen 80 LAFDVDDLDAAYERLKAQGVEIVE 103 (128)
T ss_dssp EESSHHHHHHHHHHHHHTTGEEEE
T ss_pred EeccHHHHHHHHHHHhhcCccEEe
Confidence 777666666666554 3555433
No 147
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=95.57 E-value=0.35 Score=38.45 Aligned_cols=87 Identities=10% Similarity=0.090 Sum_probs=55.6
Q ss_pred CeeEEEEEECCHHHHHHHHHH-cCCeEeeCCcccCCCCe-EEEEEE-CCCCCEEEEEEeCCCCCCceeEEEEcCCHHHHH
Q 024414 169 GFGHFGIAVDDVAKTVELIKA-KGGKVTREPGPVKGGNT-VIAFIE-DPDGYKFELLERGPTPEPLCQVMLRVGDLDRSI 245 (268)
Q Consensus 169 g~~hi~f~V~Did~~~~~L~~-~G~~i~~~p~~~~~G~~-~~~~~~-DPdG~~iEl~e~~~~~~~l~~v~L~v~d~~~s~ 245 (268)
.+.|+++.|.|+++..+..++ .|.++...... +.+.. ...|+. +..-+.+.+.+. ....+.|+.+.|.|+++..
T Consensus 6 ~l~Hv~l~v~Dle~s~~FY~~vLGf~~~~~~~~-~~~~~~~~~~l~~~~~~h~~~~~~~--~~~~~~Hiaf~v~d~~~l~ 82 (143)
T cd07243 6 RLDHCLLTGEDIAETTRFFTDVLDFYLAERVVD-PDGGTRVGSFLSCSNKPHDIAFVGG--PDGKLHHFSFFLESWEDVL 82 (143)
T ss_pred eeCEEEEecCCHHHHHHHHHHhcCCEEEEEEec-CCCCeEEEEEEecCCCcceEEEecC--CCCCceEEEEEcCCHHHHH
Confidence 577999999999999999877 89876433211 12222 234443 223334444332 2467899999999999876
Q ss_pred HHHHHh--cCCeEee
Q 024414 246 NFYEQA--FGMELLR 258 (268)
Q Consensus 246 ~FY~~v--lG~~~~~ 258 (268)
+.+..+ .|.++.+
T Consensus 83 ~~~~~l~~~Gv~i~~ 97 (143)
T cd07243 83 KAGDIISMNDVSIDI 97 (143)
T ss_pred HHHHHHHHcCCceEE
Confidence 555443 6776553
No 148
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=95.50 E-value=0.22 Score=37.83 Aligned_cols=86 Identities=24% Similarity=0.388 Sum_probs=58.7
Q ss_pred eeEEEEEECCHHHHHHHHHH-cCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEeCCC-----------CCCceeEEEE
Q 024414 170 FGHFGIAVDDVAKTVELIKA-KGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT-----------PEPLCQVMLR 237 (268)
Q Consensus 170 ~~hi~f~V~Did~~~~~L~~-~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~~~~-----------~~~l~~v~L~ 237 (268)
+.|+++.|+|++++.+..++ .|.+...... .+..+....++ .+.+..++|++..+. ...+.|+.+.
T Consensus 2 i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~-~~~~~~~~~~~-~~~~~~i~l~~~~~~~~~~~~~~~~~~~g~~~i~~~ 79 (128)
T TIGR03081 2 IDHVGIAVPDLEEAAKLYEDVLGAHVSHIEE-VPEQGVKVVFI-ALGNTKVELLEPLGEDSPIAKFLEKNGGGIHHIAIE 79 (128)
T ss_pred CCEEEEEeCCHHHHHHHHHHHhCCCCcccee-CCCCCcEEEEE-ecCCEEEEEEecCCCCChHHHHHhcCCCceEEEEEE
Confidence 46999999999999999975 7887643211 11222233333 334668888875321 2345699999
Q ss_pred cCCHHHHHHHHHHhcCCeEee
Q 024414 238 VGDLDRSINFYEQAFGMELLR 258 (268)
Q Consensus 238 v~d~~~s~~FY~~vlG~~~~~ 258 (268)
|.|++++.+...+ .|.++..
T Consensus 80 v~di~~~~~~l~~-~G~~~~~ 99 (128)
T TIGR03081 80 VDDIEAALETLKE-KGVRLID 99 (128)
T ss_pred cCCHHHHHHHHHH-CCCcccC
Confidence 9999999998876 6887654
No 149
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=95.47 E-value=0.046 Score=45.11 Aligned_cols=83 Identities=31% Similarity=0.365 Sum_probs=50.1
Q ss_pred eeEEEEEECCHHHHHHHH-HHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEeCCC-----------------CCCc
Q 024414 170 FGHFGIAVDDVAKTVELI-KAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT-----------------PEPL 231 (268)
Q Consensus 170 ~~hi~f~V~Did~~~~~L-~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~~~~-----------------~~~l 231 (268)
+.|+.+.|+|++++.+++ ++.|+++... ...+.+++....+.=++| .|||+...++ ...+
T Consensus 1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~g-g~h~~~GT~N~li~f~~~-YlEli~i~~~~~~~~~~~~~~~~~~~~~~g~ 78 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQRLGFTVTPG-GEHPGWGTANALIPFGDG-YLELIAIDPEAPAPDRGRWFGLDRLAGGEGL 78 (175)
T ss_dssp EEEEEEE-TTGGG----GGGS--S--EEE-EE-TTT-EEEEEEE-SSS-EEEEEEES-HHHSTGGGT-TTTHHHHT--EE
T ss_pred CCEEEEEcCCHHHHHHhhhhcceEeecCC-CcCCCCccEEEEEeeCCc-eEEEEEeCCcccccccccceechhhcCCCCe
Confidence 469999999999999999 8889988755 344443455555555778 9999986531 1345
Q ss_pred eeEEEEcCCHHHHHHHHHHhcCCe
Q 024414 232 CQVMLRVGDLDRSINFYEQAFGME 255 (268)
Q Consensus 232 ~~v~L~v~d~~~s~~FY~~vlG~~ 255 (268)
..+.+.+.|+++..+-.++ .|++
T Consensus 79 ~~~~l~t~d~~~~~~~l~~-~G~~ 101 (175)
T PF13468_consen 79 YGWALRTDDIEAVAARLRA-AGLD 101 (175)
T ss_dssp EEEEEE-S-HHHHHHHHHT-TT-E
T ss_pred EEEEEecCCHHHHHHHHHh-cCCC
Confidence 6889999999999999976 7764
No 150
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=95.43 E-value=0.27 Score=38.04 Aligned_cols=85 Identities=22% Similarity=0.266 Sum_probs=56.0
Q ss_pred eEEEEEECCHHHHHHHHHH-cCCeEeeCCcccCCCCeEEEEEECC-CCCEEEEEEeCCCCCCceeEEEEcCCHHHHHHHH
Q 024414 171 GHFGIAVDDVAKTVELIKA-KGGKVTREPGPVKGGNTVIAFIEDP-DGYKFELLERGPTPEPLCQVMLRVGDLDRSINFY 248 (268)
Q Consensus 171 ~hi~f~V~Did~~~~~L~~-~G~~i~~~p~~~~~G~~~~~~~~DP-dG~~iEl~e~~~~~~~l~~v~L~v~d~~~s~~FY 248 (268)
.||+|.|.|++++.+.+.+ .|.++..... .+ +.....++... .+..+.+.... ....+.|+.+.|.|.++..+++
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~-~~-~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~hl~~~v~d~~~~~~~~ 77 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVG-DP-GVDAAAFLRCDEDHHDLALFPGP-ERPGLHHVAFEVESLDDILRAA 77 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEc-cC-CceeEEEEEcCCCcceEEEEcCC-CCCCeeEEEEEcCCHHHHHHHH
Confidence 3899999999999998876 7988754321 11 22234455543 34456666543 2567899999999987655555
Q ss_pred HHh--cCCeEee
Q 024414 249 EQA--FGMELLR 258 (268)
Q Consensus 249 ~~v--lG~~~~~ 258 (268)
+++ .|.++..
T Consensus 78 ~~l~~~G~~i~~ 89 (131)
T cd08343 78 DRLAANGIQIEF 89 (131)
T ss_pred HHHHHcCCeeEE
Confidence 543 5676543
No 151
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=95.15 E-value=0.37 Score=39.10 Aligned_cols=85 Identities=19% Similarity=0.200 Sum_probs=53.0
Q ss_pred CCeeEEEEEECCHHHHHHHHHH-cCCeEeeCCcccCCCCeEEEEEECCC-CCEEEEEEeCCCCCCceeEEEEcCCHHHHH
Q 024414 168 TGFGHFGIAVDDVAKTVELIKA-KGGKVTREPGPVKGGNTVIAFIEDPD-GYKFELLERGPTPEPLCQVMLRVGDLDRSI 245 (268)
Q Consensus 168 ~g~~hi~f~V~Did~~~~~L~~-~G~~i~~~p~~~~~G~~~~~~~~DPd-G~~iEl~e~~~~~~~l~~v~L~v~d~~~s~ 245 (268)
.++.|+++.|+|+++..+...+ .|.++..... .+.+.....++...+ .+.+.+.+. ....+.|+.+.|.|.+...
T Consensus 2 ~~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~~~~-~~~~~~~~~~l~~~~~~~~i~l~~~--~~~~~~Hiaf~v~~~~~v~ 78 (161)
T cd07256 2 QRLDHFNLRVPDVDAGLAYYRDELGFRVSEYTE-DDDGTTWAAWLHRKGGVHDTALTGG--NGPRLHHVAFWVPEPHNII 78 (161)
T ss_pred ceEEEEEEecCCHHHHHHHHHhccCCEEEEEec-cCCCcEEEEEEecCCCcceEEEecC--CCCceeEEEEEcCCHHHHH
Confidence 3578999999999999999877 7887653211 112233345554433 333544432 2246889999998866666
Q ss_pred HHHHHh--cCCe
Q 024414 246 NFYEQA--FGME 255 (268)
Q Consensus 246 ~FY~~v--lG~~ 255 (268)
+.+.++ .|..
T Consensus 79 ~~~~~L~~~G~~ 90 (161)
T cd07256 79 RTCDLLAAAGYS 90 (161)
T ss_pred HHHHHHHHcCCC
Confidence 555444 4554
No 152
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=94.90 E-value=0.43 Score=35.74 Aligned_cols=82 Identities=18% Similarity=0.189 Sum_probs=56.6
Q ss_pred CeeEEEEEECCHHHHHHHHHH-cCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEeCC--------CCCCceeEEEEcC
Q 024414 169 GFGHFGIAVDDVAKTVELIKA-KGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP--------TPEPLCQVMLRVG 239 (268)
Q Consensus 169 g~~hi~f~V~Did~~~~~L~~-~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~~~--------~~~~l~~v~L~v~ 239 (268)
++.|+.+.|+|+++..+..++ .|.+....... .+ ...+.- ++..+++.+... ....+.|+.+.+.
T Consensus 3 ~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~~~--~~---~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~hi~~~~~ 76 (125)
T cd07253 3 RIDHVVLTVADIEATLDFYTRVLGMEVVRFGEE--VG---RKALRF-GSQKINLHPVGGEFEPAAGSPGPGSDDLCLITE 76 (125)
T ss_pred ccceEEEEecCHHHHHHHHHHHhCceeeccccc--CC---ceEEEe-CCEEEEEecCCCccCcCccCCCCCCceEEEEec
Confidence 578999999999999999988 79887644221 01 122332 235677776432 1245789999996
Q ss_pred C-HHHHHHHHHHhcCCeEe
Q 024414 240 D-LDRSINFYEQAFGMELL 257 (268)
Q Consensus 240 d-~~~s~~FY~~vlG~~~~ 257 (268)
+ ++++.+.+.+ .|.++.
T Consensus 77 ~~~~~~~~~l~~-~G~~~~ 94 (125)
T cd07253 77 PPIDELVAHLEA-HGVPIE 94 (125)
T ss_pred ccHHHHHHHHHH-CCceee
Confidence 4 8998888877 687754
No 153
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=94.66 E-value=0.55 Score=37.37 Aligned_cols=81 Identities=20% Similarity=0.272 Sum_probs=54.6
Q ss_pred CCeeEEEEEECCHHHHHHHHHH-cCCeEeeCCcccCCCCeEEEEEECC-CCCEEEEEEeCCCCCCceeEEEEcCCHHHHH
Q 024414 168 TGFGHFGIAVDDVAKTVELIKA-KGGKVTREPGPVKGGNTVIAFIEDP-DGYKFELLERGPTPEPLCQVMLRVGDLDRSI 245 (268)
Q Consensus 168 ~g~~hi~f~V~Did~~~~~L~~-~G~~i~~~p~~~~~G~~~~~~~~DP-dG~~iEl~e~~~~~~~l~~v~L~v~d~~~s~ 245 (268)
..+.|+.+.|+|++++.+..++ .|..+.... +. ...++... .+..+.+.... ...+.|+.+.|.|+++..
T Consensus 3 ~~l~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~-----~~-~~~~l~~~~~~~~~~l~~~~--~~~~~hiaf~v~d~~~l~ 74 (144)
T cd07239 3 VKISHVVLNSPDVDKTVAFYEDVLGFRVSDWL-----GD-QMAFLRCNSDHHSIAIARGP--HPSLNHVAFEMPSIDEVM 74 (144)
T ss_pred ceeeEEEEECCCHHHHHHHHHhcCCCEEEEee-----CC-eEEEEECCCCcceEEEccCC--CCceEEEEEECCCHHHHH
Confidence 3678999999999999998866 787764221 11 23455533 34556665432 356889999999999998
Q ss_pred HHHHHh--cCCeE
Q 024414 246 NFYEQA--FGMEL 256 (268)
Q Consensus 246 ~FY~~v--lG~~~ 256 (268)
+++.++ .|.++
T Consensus 75 ~~~~~l~~~Gi~~ 87 (144)
T cd07239 75 RGIGRMIDKGIDI 87 (144)
T ss_pred HHHHHHHHcCCce
Confidence 766554 44443
No 154
>PF14507 CppA_C: CppA C-terminal; PDB: 3E0R_D.
Probab=94.24 E-value=0.15 Score=38.37 Aligned_cols=90 Identities=14% Similarity=0.198 Sum_probs=41.5
Q ss_pred eeeEEEEEeCCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCCCCceEEEEEeeccCC--CC-CCCCCCeeEEEEE
Q 024414 100 RMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGV--DK-YDIGTGFGHFGIA 176 (268)
Q Consensus 100 ~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~--~~-~~~g~g~~hi~f~ 176 (268)
.+.-|.|.|+| +++.+||.++||-+. + +.+.+.+..+. .- ....=++..+-|.
T Consensus 5 ~~e~i~LNV~d-~~~~~fy~~~f~~~~----~-------------------~~l~f~ea~G~DL~~~~~~twDLe~Lkf~ 60 (101)
T PF14507_consen 5 EFESIELNVPD-AKSQSFYQSIFGGQL----P-------------------FFLTFQEAQGPDLTIENNETWDLEMLKFQ 60 (101)
T ss_dssp EE-EEEEEE-T--T---S--H---HHH----T-------------------TTEEEEE---CCGSS-TTSBSSEEEEEEE
T ss_pred EEEEEEEeCCC-hhHHHHHHhccccCC----C-------------------ceEEEeeccCCccccCCCcEEeeEEEEEE
Confidence 45678999999 889999999886211 0 01111111111 10 1111266678889
Q ss_pred EC---CHHHHHHHHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEE
Q 024414 177 VD---DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFEL 221 (268)
Q Consensus 177 V~---Did~~~~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl 221 (268)
|+ |+.++.+++.+.++ +. +...+.+.+.||+|+.|.|
T Consensus 61 V~~~~Dl~~L~~~le~~~~-fi-------dKk~k~l~~~Dps~IElWF 100 (101)
T PF14507_consen 61 VPKDFDLAALKSHLEEQEF-FI-------DKKEKFLVTSDPSQIELWF 100 (101)
T ss_dssp ES-S--HHHHHHHTTTS-E-E---------TT-SEEEEE-TTS-EEEE
T ss_pred ecCcccHHHHHHHhcccce-Ee-------cCCceEEEEECCcceEEEe
Confidence 98 57888888877332 11 1234678889999987765
No 155
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=93.93 E-value=0.72 Score=36.65 Aligned_cols=80 Identities=13% Similarity=0.163 Sum_probs=51.9
Q ss_pred EEEEEECCHHHHHHHH-HHcCCeEeeCCcccCCCCeEEEEEECCCC-CEEEEEEeCCCCCCceeEEEEcCCHHHHHHHHH
Q 024414 172 HFGIAVDDVAKTVELI-KAKGGKVTREPGPVKGGNTVIAFIEDPDG-YKFELLERGPTPEPLCQVMLRVGDLDRSINFYE 249 (268)
Q Consensus 172 hi~f~V~Did~~~~~L-~~~G~~i~~~p~~~~~G~~~~~~~~DPdG-~~iEl~e~~~~~~~l~~v~L~v~d~~~s~~FY~ 249 (268)
|+.+.|+|+++..+.+ .-.|.+..... . ...+|++...+ ....+....+....+.|+.+.|.|.+...+++.
T Consensus 2 Hv~l~V~Dle~s~~Fy~~vLG~~~~~~~----~--~~~~~l~~~~~~~~h~~~~~~~~~~gl~Hiaf~v~~~~~v~~~~~ 75 (141)
T cd07258 2 HVVIGSENFEASRDSLVEDFGFRVSDLI----E--DRIVFMRCHPNPFHHTFAVGPASSSHFHHVNFMVTDIDDIGKALY 75 (141)
T ss_pred cEEEecCCHHHHHHHHHhcCCCEeeeee----C--CEEEEEEcCCCCCcceeeeccCCCCceEEEEEECCCHHHHHHHHH
Confidence 8999999999999988 45788765331 1 13456663221 112222233345789999999998877666666
Q ss_pred Hh--cCCeEe
Q 024414 250 QA--FGMELL 257 (268)
Q Consensus 250 ~v--lG~~~~ 257 (268)
.+ .|.++.
T Consensus 76 ~l~~~G~~~~ 85 (141)
T cd07258 76 RIKAHDVKVV 85 (141)
T ss_pred HHHHCCCcEE
Confidence 54 576653
No 156
>COG3865 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.60 E-value=3.1 Score=33.34 Aligned_cols=98 Identities=16% Similarity=0.326 Sum_probs=56.7
Q ss_pred CCHHHHHHHHHhhcCC-EEE--EEecCC-----CCceeEEEEeeCCCCceEEEEEeeccCCCCCCCCCCeeEEEEEECC-
Q 024414 109 GDLDRTIKFYTECLGM-KLL--RKRDIP-----EEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDD- 179 (268)
Q Consensus 109 ~Dle~a~~FY~~vLG~-~~~--~~~~~~-----~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f~V~D- 179 (268)
.+.++|..||.++|-= ++. .+.+.+ .+.+..+.+.++.. -.+. ........+....++ .+-+.++|
T Consensus 14 ~~AeeA~~fY~s~FpdS~i~~i~r~p~~~~~g~~G~Vl~a~F~l~g~---~f~~-ld~g~~~~f~fneA~-S~~v~~~~q 88 (151)
T COG3865 14 GNAEEAMNFYLSTFPDSKIIGITRYPEGEPGGKEGKVLVAEFTLNGQ---SFMA-LDGGPNTSFKFNEAF-SFQVACDDQ 88 (151)
T ss_pred CcHHHHHHHHHHhCCcceeeeeeecCCCCCCCCCccEEEEEEEECCe---EEEE-EcCCCCcCCCcCccE-EEEEEcCCH
Confidence 8999999999999842 222 111111 22333344444421 1122 222222234444443 35566666
Q ss_pred --HHHHHHHHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEEE
Q 024414 180 --VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 222 (268)
Q Consensus 180 --id~~~~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~ 222 (268)
+|.++..|.+.|.. .....+++|-.|.-|+|+
T Consensus 89 ~E~Drlwnal~~~g~e-----------~~~cgW~kDKfGVSWQi~ 122 (151)
T COG3865 89 EEIDRLWNALSDNGGE-----------AEACGWLKDKFGVSWQIV 122 (151)
T ss_pred HHHHHHHHHHhccCcc-----------hhcceeEecccCcEEEEc
Confidence 77788888888862 124579999999999998
No 157
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=93.42 E-value=1.5 Score=34.37 Aligned_cols=80 Identities=19% Similarity=0.368 Sum_probs=55.0
Q ss_pred CeeEEEEEECCHHHHHHHHHH-cCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEeCCC-----CCCceeEEEEcC--C
Q 024414 169 GFGHFGIAVDDVAKTVELIKA-KGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT-----PEPLCQVMLRVG--D 240 (268)
Q Consensus 169 g~~hi~f~V~Did~~~~~L~~-~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~~~~-----~~~l~~v~L~v~--d 240 (268)
++.|+++.|+|++++.+...+ .|.++... +. ..+++.. .|..+.+...... ...+.|+.+.+. |
T Consensus 4 ~i~hi~L~v~Dl~~s~~FY~~~lG~~~~~~------~~-~~~~~~~-~g~~l~l~~~~~~~~~~~~~~~~hiaf~v~~~d 75 (139)
T PRK04101 4 GINHICFSVSNLEKSIEFYEKVLGAKLLVK------GR-KTAYFDL-NGLWIALNEEKDIPRNEIHQSYTHIAFSIEEED 75 (139)
T ss_pred cEEEEEEEecCHHHHHHHHHhccCCEEEee------cC-eeEEEec-CCeEEEeeccCCCCCccCCCCeeEEEEEecHHH
Confidence 678999999999999998865 78776432 11 2344443 5677777654321 234679999886 8
Q ss_pred HHHHHHHHHHhcCCeEe
Q 024414 241 LDRSINFYEQAFGMELL 257 (268)
Q Consensus 241 ~~~s~~FY~~vlG~~~~ 257 (268)
+++..+...+ .|.++.
T Consensus 76 v~~~~~~l~~-~G~~i~ 91 (139)
T PRK04101 76 FDHWYQRLKE-NDVNIL 91 (139)
T ss_pred HHHHHHHHHH-CCceEc
Confidence 8888887766 677654
No 158
>PRK10291 glyoxalase I; Provisional
Probab=93.30 E-value=1.4 Score=33.89 Aligned_cols=82 Identities=16% Similarity=0.149 Sum_probs=54.4
Q ss_pred EEEECCHHHHHHHHHH-cCCeEeeCCcccCCCCeEEEEEECC---CCCEEEEEEeCCC-----CCCceeEEEEcCCHHHH
Q 024414 174 GIAVDDVAKTVELIKA-KGGKVTREPGPVKGGNTVIAFIEDP---DGYKFELLERGPT-----PEPLCQVMLRVGDLDRS 244 (268)
Q Consensus 174 ~f~V~Did~~~~~L~~-~G~~i~~~p~~~~~G~~~~~~~~DP---dG~~iEl~e~~~~-----~~~l~~v~L~v~d~~~s 244 (268)
++.|.|+++..+...+ .|.++..... .+....+.+++... .+..+++....+. ...+.|+.+.|.|++++
T Consensus 1 ~l~V~Dle~s~~FY~~~LG~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~hlaf~V~d~~~~ 79 (129)
T PRK10291 1 MLRVGDLQRSIDFYTNVLGMKLLRTSE-NPEYKYSLAFVGYGPETEEAVIELTYNWGVDKYELGTAYGHIALSVDNAAEA 79 (129)
T ss_pred CEEecCHHHHHHHHHhccCCEEEEeec-CCCCcEEEEEEccCCCCCcceEEeeecCCCCCCcCCCCeeEEEEEeCCHHHH
Confidence 4789999999998866 8988754322 22223345555432 2345676543221 23588999999999999
Q ss_pred HHHHHHhcCCeEe
Q 024414 245 INFYEQAFGMELL 257 (268)
Q Consensus 245 ~~FY~~vlG~~~~ 257 (268)
.+..++ .|.++.
T Consensus 80 ~~~l~~-~G~~~~ 91 (129)
T PRK10291 80 CEKIRQ-NGGNVT 91 (129)
T ss_pred HHHHHH-cCCccc
Confidence 888866 777654
No 159
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=93.03 E-value=1.4 Score=33.21 Aligned_cols=83 Identities=16% Similarity=0.121 Sum_probs=48.0
Q ss_pred eeEEEEEECCHHHHHHHHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEeC--------C--CCCCceeEEEEcC
Q 024414 170 FGHFGIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG--------P--TPEPLCQVMLRVG 239 (268)
Q Consensus 170 ~~hi~f~V~Did~~~~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~~--------~--~~~~l~~v~L~v~ 239 (268)
+.|+++.|+|+++..+...+.|.++..... ....+.+..++|..+.+.... . ....-.++.+.+.
T Consensus 1 ~~~i~l~V~D~~~a~~FY~~LGf~~~~~~~-----~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 75 (122)
T cd07235 1 LDAVGIVVADMAKSLDFYRRLGFDFPEEAD-----DEPHVEAVLPGGVRLAWDTVESIRSFTPGWTPTGGHRIALAFLCE 75 (122)
T ss_pred CceEEEEeccHHHHHHHHHHhCceecCCcC-----CCCcEEEEeCCCEEEEEEcccceeeecCCCCCCCCCcEEEEEEcC
Confidence 358999999999999999888987642211 012234454556555543321 1 1122346777776
Q ss_pred CHHHHHHHHHHh--cCCeEe
Q 024414 240 DLDRSINFYEQA--FGMELL 257 (268)
Q Consensus 240 d~~~s~~FY~~v--lG~~~~ 257 (268)
+.+...+.|+++ .|.++.
T Consensus 76 ~~~dvd~~~~~l~~~G~~~~ 95 (122)
T cd07235 76 TPAEVDALYAELVGAGYPGH 95 (122)
T ss_pred CHHHHHHHHHHHHHCCCCcC
Confidence 555555555544 465543
No 160
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=92.99 E-value=0.44 Score=38.78 Aligned_cols=44 Identities=25% Similarity=0.354 Sum_probs=32.7
Q ss_pred CceeeEEEEEeCCHHHHHHHHHhhcCCEEEEEecCCCCce-eEEEEee
Q 024414 98 KRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKY-TNAFLGY 144 (268)
Q Consensus 98 ~~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~-~~~~l~~ 144 (268)
.++++||+|.|+|+.++..-+++ +|.+...+. .++.. ..+|+.-
T Consensus 113 prGfgHIci~V~di~sac~~lke-kGV~f~Kk~--~dGk~K~iaF~~d 157 (170)
T KOG2944|consen 113 PRGFGHICIEVDDINSACERLKE-KGVRFKKKL--KDGKMKPIAFLHD 157 (170)
T ss_pred CCccceEEEEeCCHHHHHHHHHH-hCceeeecC--CCccccceeEEEC
Confidence 36999999999999999999987 999955443 33333 3455543
No 161
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=92.61 E-value=2.3 Score=31.88 Aligned_cols=82 Identities=20% Similarity=0.276 Sum_probs=50.6
Q ss_pred eEEEEEECCHHHHHHHHHHc-CCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEeCCCC-CCceeEEEEcCCHHHHHHHH
Q 024414 171 GHFGIAVDDVAKTVELIKAK-GGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPTP-EPLCQVMLRVGDLDRSINFY 248 (268)
Q Consensus 171 ~hi~f~V~Did~~~~~L~~~-G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~~~~~-~~l~~v~L~v~d~~~s~~FY 248 (268)
.|+.+.|+|++++.+...+. |.+..... .+ ...+...-.+..+.+......+ ..+.|+.+.+.|.+...++|
T Consensus 3 ~hv~l~v~d~~~a~~FY~~~lG~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~f~v~~~~dl~~~~ 76 (120)
T cd07254 3 FHVALNVDDLEASIAFYSKLFGVEPTKVR----DD--YAKFLLEDPRLNFVLNERPGAPGGGLNHLGVQVDSAEEVAEAK 76 (120)
T ss_pred EEEEEEeCCHHHHHHHHHHHhCCeEeccc----CC--eeEEEecCCceEEEEecCCCCCCCCeeEEEEEeCCHHHHHHHH
Confidence 38999999999999988774 77654321 11 1223222233334444333223 47889999999977766666
Q ss_pred HHhc--CCeEee
Q 024414 249 EQAF--GMELLR 258 (268)
Q Consensus 249 ~~vl--G~~~~~ 258 (268)
+++- |.++..
T Consensus 77 ~~l~~~G~~~~~ 88 (120)
T cd07254 77 ARAEAAGLPTFK 88 (120)
T ss_pred HHHHHcCCeEEc
Confidence 6654 766543
No 162
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=92.38 E-value=3.2 Score=30.67 Aligned_cols=78 Identities=19% Similarity=0.254 Sum_probs=54.4
Q ss_pred EEEEECCHHHHHHHHHH-cCCeEeeCCcccCCCCeEEEEEECCC--CCEEEEEEeCCCCCCceeEEEEcCCHHHHHHHHH
Q 024414 173 FGIAVDDVAKTVELIKA-KGGKVTREPGPVKGGNTVIAFIEDPD--GYKFELLERGPTPEPLCQVMLRVGDLDRSINFYE 249 (268)
Q Consensus 173 i~f~V~Did~~~~~L~~-~G~~i~~~p~~~~~G~~~~~~~~DPd--G~~iEl~e~~~~~~~l~~v~L~v~d~~~s~~FY~ 249 (268)
..+.|+|+++..+..++ .|.+.... .+ ...++..+. +..+.+...........|+.+.|.|++++.+-+.
T Consensus 4 ~~l~v~Dl~~s~~FY~~~lG~~~~~~-----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~d~~~~~~~l~ 76 (112)
T cd07238 4 PNLPVADPEAAAAFYADVLGLDVVMD-----HG--WIATFASPQNMTVQVSLATEGGTATVVPDLSIEVDDVDAALARAV 76 (112)
T ss_pred ceEecCCHHHHHHHHHHhcCceEEEc-----CC--ceEEEeecCCCCcEEEEecCCCCCCCCCEEEEEeCCHHHHHHHHH
Confidence 46789999999999987 89886432 22 234444333 4556776554444456799999999999988886
Q ss_pred HhcCCeEee
Q 024414 250 QAFGMELLR 258 (268)
Q Consensus 250 ~vlG~~~~~ 258 (268)
+ .|.++..
T Consensus 77 ~-~G~~~~~ 84 (112)
T cd07238 77 A-AGFAIVY 84 (112)
T ss_pred h-cCCeEec
Confidence 6 7877654
No 163
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=92.02 E-value=0.13 Score=38.95 Aligned_cols=26 Identities=27% Similarity=0.507 Sum_probs=21.9
Q ss_pred EEEEcCCHHHHHHHHHHhcCCeEeeee
Q 024414 234 VMLRVGDLDRSINFYEQAFGMELLRKR 260 (268)
Q Consensus 234 v~L~v~d~~~s~~FY~~vlG~~~~~~~ 260 (268)
..|.|.|++++.+||++ |||++....
T Consensus 5 ~~l~v~Dl~~s~~FY~~-LGf~~~~~~ 30 (113)
T cd08356 5 PFIPAKDFAESKQFYQA-LGFELEWEN 30 (113)
T ss_pred eccccccHHHHHHHHHH-hCCeeEecC
Confidence 45789999999999988 899986653
No 164
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=91.74 E-value=2.5 Score=32.03 Aligned_cols=81 Identities=16% Similarity=0.143 Sum_probs=51.1
Q ss_pred eEEEEEECCHHHHHHHHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEeC------------CCCCCceeEEEEc
Q 024414 171 GHFGIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG------------PTPEPLCQVMLRV 238 (268)
Q Consensus 171 ~hi~f~V~Did~~~~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~~------------~~~~~l~~v~L~v 238 (268)
..+.+.|.|+++..+-.+..|.+.... ...+.. ..+.-.++..+.+.+.. +.+....|+.+.|
T Consensus 2 ~~v~l~V~Dl~~s~~FY~~lGf~~~~~---~~~~~~--~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~f~v 76 (124)
T cd09012 2 IFINLPVKDLEKSTAFYTALGFEFNPQ---FSDEKA--ACMVISDNIFVMLLTEDFFQTFTPKPIADTKKSTEVLISLSA 76 (124)
T ss_pred EEEEeecCCHHHHHHHHHHCCCEEccc---cCCCCe--EEEEECCceEEEEEcHHHHhhccCCCcccCCCCCeEEEEEeC
Confidence 368999999999999998888876421 111111 22322345667776532 1123356889999
Q ss_pred CCHHHHHHHHHHh--cCCeE
Q 024414 239 GDLDRSINFYEQA--FGMEL 256 (268)
Q Consensus 239 ~d~~~s~~FY~~v--lG~~~ 256 (268)
.+.+...++|+++ .|-++
T Consensus 77 ~~~~~vd~~~~~l~~~G~~i 96 (124)
T cd09012 77 DSREEVDELVEKALAAGGKE 96 (124)
T ss_pred CCHHHHHHHHHHHHHCCCcc
Confidence 9877777777765 45544
No 165
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=91.26 E-value=2 Score=33.33 Aligned_cols=79 Identities=18% Similarity=0.285 Sum_probs=51.6
Q ss_pred eeEEEEEECCHHHHHHHHHH-cCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEeCCC-----CCCceeEEEEcCC--H
Q 024414 170 FGHFGIAVDDVAKTVELIKA-KGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT-----PEPLCQVMLRVGD--L 241 (268)
Q Consensus 170 ~~hi~f~V~Did~~~~~L~~-~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~~~~-----~~~l~~v~L~v~d--~ 241 (268)
+.|+++.|+|++++.+...+ .|..+... +.. ..++.- .|..+++.+.... ...+.|+.+.+.+ +
T Consensus 1 i~HV~l~V~Dl~~a~~FY~~~LG~~~~~~------~~~-~~~~~~-~~~~l~l~~~~~~~~~~~~~~~~hiaf~v~~~dl 72 (131)
T cd08363 1 INHMTFSVSNLDKSISFYKHVFMEKLLVL------GEK-TAYFTI-GGTWLALNEEPDIPRNEIRQSYTHIAFTIEDSEF 72 (131)
T ss_pred CceEEEEECCHHHHHHHHHHhhCCEEecc------CCc-cceEee-CceEEEEEccCCCCcCCcCccceEEEEEecHHHH
Confidence 46999999999999998887 58776432 111 233433 4667777654432 2357799999864 6
Q ss_pred HHHHHHHHHhcCCeEe
Q 024414 242 DRSINFYEQAFGMELL 257 (268)
Q Consensus 242 ~~s~~FY~~vlG~~~~ 257 (268)
++..+-..+ .|.++.
T Consensus 73 d~~~~~l~~-~G~~~~ 87 (131)
T cd08363 73 DAFYTRLKE-AGVNIL 87 (131)
T ss_pred HHHHHHHHH-cCCccc
Confidence 666666655 566643
No 166
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=90.78 E-value=4.7 Score=29.99 Aligned_cols=80 Identities=14% Similarity=0.109 Sum_probs=50.2
Q ss_pred eEEEEEECCHHHHHHHHHH-cCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEeCC-----------CCCCceeEEEEc
Q 024414 171 GHFGIAVDDVAKTVELIKA-KGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP-----------TPEPLCQVMLRV 238 (268)
Q Consensus 171 ~hi~f~V~Did~~~~~L~~-~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~~~-----------~~~~l~~v~L~v 238 (268)
.|+.+.|.|++++.+...+ .|.++... +.+ ...++.-.++..+.+++... ....+.|+.+.+
T Consensus 2 ~~~~l~v~d~~~s~~Fy~~~lG~~~~~~----~~~--~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v 75 (122)
T cd08354 2 LETALYVDDLEAAEAFYEDVLGLELMLK----EDR--RLAFFWVGGRGMLLLFDPGATSTPGGEIPPHGGSGPGHFAFAI 75 (122)
T ss_pred eEEEEEeCCHHHHHHHHHhccCCEEeec----CCC--ceEEEEcCCCcEEEEEecCCcccccCCCCCCCCCCccEEEEEc
Confidence 4799999999999999975 78887642 122 23455544556666666431 124678999998
Q ss_pred C--CHHHHHHHHHHhcCCeEe
Q 024414 239 G--DLDRSINFYEQAFGMELL 257 (268)
Q Consensus 239 ~--d~~~s~~FY~~vlG~~~~ 257 (268)
. |+++..+-..+ .|.++.
T Consensus 76 ~~~dl~~~~~~l~~-~g~~~~ 95 (122)
T cd08354 76 PAEELAEWEAHLEA-KGVAIE 95 (122)
T ss_pred CHHHHHHHHHHHHh-cCCcee
Confidence 5 45555444433 444443
No 167
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=89.59 E-value=8.5 Score=30.12 Aligned_cols=87 Identities=16% Similarity=0.109 Sum_probs=52.8
Q ss_pred eeEEEEEECCHHHHHHHHHH-cCCeEeeCCcccC----------CCCeEEEEEE---CCCCCEEEEEEeCCC---CCCce
Q 024414 170 FGHFGIAVDDVAKTVELIKA-KGGKVTREPGPVK----------GGNTVIAFIE---DPDGYKFELLERGPT---PEPLC 232 (268)
Q Consensus 170 ~~hi~f~V~Did~~~~~L~~-~G~~i~~~p~~~~----------~G~~~~~~~~---DPdG~~iEl~e~~~~---~~~l~ 232 (268)
+.|+++.|.|+++.++-..+ .|.+......... .|.....++. +..+..+|+...... +..-+
T Consensus 3 ~~Hv~irV~DlerSi~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~lEL~~n~~~~~~~~g~~ 82 (127)
T cd08358 3 ALHFVFKVGNRNKTIKFYREVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMIGYGPEDDHFVVELTYNYGIGDYELGND 82 (127)
T ss_pred eEEEEEEeCCHHHHHHHHHHhcCCEEEeeecCccccccccccCCCCcEEEEEEecCCCCCccEEEeEecCCCCCCCCCCC
Confidence 56999999999999999965 7998754321111 1222223342 345668999864421 21224
Q ss_pred eEEEEcCCHHHHHHHHHHhcCCeEee
Q 024414 233 QVMLRVGDLDRSINFYEQAFGMELLR 258 (268)
Q Consensus 233 ~v~L~v~d~~~s~~FY~~vlG~~~~~ 258 (268)
|+.|.+.+.+ ..+..+ -.|+.+.+
T Consensus 83 ~~hlav~~~d-~~~~l~-~~Gv~~~~ 106 (127)
T cd08358 83 FLGITIHSKQ-AVSNAK-KHNWPVTE 106 (127)
T ss_pred EEEEEEECHH-HHHHHH-HCCCceec
Confidence 7777887774 334443 37877665
No 168
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=88.91 E-value=3.8 Score=30.17 Aligned_cols=77 Identities=17% Similarity=0.349 Sum_probs=49.4
Q ss_pred EEEEEECCHHHHHHHHHH-cCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEeCCC---CCCceeEEEEcC--CHHHHH
Q 024414 172 HFGIAVDDVAKTVELIKA-KGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT---PEPLCQVMLRVG--DLDRSI 245 (268)
Q Consensus 172 hi~f~V~Did~~~~~L~~-~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~~~~---~~~l~~v~L~v~--d~~~s~ 245 (268)
|+++.|+|++++.+...+ .|....... .+ ..++.- .+..+.+...... ...+.|+.+.+. |+++..
T Consensus 1 Hv~l~v~d~~~s~~Fy~~~lg~~~~~~~----~~---~~~~~~-~~~~l~~~~~~~~~~~~~~~~hiaf~v~~~d~~~~~ 72 (113)
T cd08345 1 HITLIVKDLNKSIAFYRDILGAELIYSS----SK---EAYFEL-AGLWICLMEEDSLQGPERTYTHIAFQIQSEEFDEYT 72 (113)
T ss_pred CeeEEECCHHHHHHHHHHhcCCeeeecc----Cc---eeEEEe-cCeEEEeccCCCcCCCCCCccEEEEEcCHHHHHHHH
Confidence 789999999999998887 676654321 11 123333 2566666544322 356789999984 566666
Q ss_pred HHHHHhcCCeEe
Q 024414 246 NFYEQAFGMELL 257 (268)
Q Consensus 246 ~FY~~vlG~~~~ 257 (268)
+-..+ .|.++.
T Consensus 73 ~~l~~-~G~~~~ 83 (113)
T cd08345 73 ERLKA-LGVEMK 83 (113)
T ss_pred HHHHH-cCCccC
Confidence 66655 677754
No 169
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=88.76 E-value=6.8 Score=29.49 Aligned_cols=80 Identities=19% Similarity=0.223 Sum_probs=49.9
Q ss_pred CeeEEEEEECCHHHHHHHHHH-cCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEeC--CCCCCceeEEEEc--CCHHH
Q 024414 169 GFGHFGIAVDDVAKTVELIKA-KGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG--PTPEPLCQVMLRV--GDLDR 243 (268)
Q Consensus 169 g~~hi~f~V~Did~~~~~L~~-~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~~--~~~~~l~~v~L~v--~d~~~ 243 (268)
|+.|+.+.|+|++++.+...+ .|.+..... + .. .++. .+|..+.+.... +....+.|+.+.+ .|+++
T Consensus 1 ~i~hv~l~v~d~~~~~~FY~~vLG~~~~~~~---~--~~--~~~~-~~~~~~~l~~~~~~~~~~~~~hi~f~v~~~dl~~ 72 (121)
T cd07244 1 GINHITLAVSDLERSVAFYVDLLGFKLHVRW---D--KG--AYLE-AGDLWLCLSVDANVGPAKDYTHYAFSVSEEDFAS 72 (121)
T ss_pred CcceEEEEECCHHHHHHHHHHhcCCEEEEec---C--Cc--eEEe-cCCEEEEEecCCCCCCCCCeeeEEEEeCHHHHHH
Confidence 467999999999999998876 788764321 1 11 2333 234455553322 1235678999988 45666
Q ss_pred HHHHHHHhcCCeEe
Q 024414 244 SINFYEQAFGMELL 257 (268)
Q Consensus 244 s~~FY~~vlG~~~~ 257 (268)
..+...+ .|.++.
T Consensus 73 ~~~~l~~-~G~~~~ 85 (121)
T cd07244 73 LKEKLRQ-AGVKEW 85 (121)
T ss_pred HHHHHHH-cCCccc
Confidence 6666655 466543
No 170
>PRK11700 hypothetical protein; Provisional
Probab=87.13 E-value=9.7 Score=31.94 Aligned_cols=79 Identities=18% Similarity=0.202 Sum_probs=45.5
Q ss_pred CceeeEEEEEeCCHHHHHHHHHhhcCC-EEEEEecCCCCceeEEEE----eeCCCCceEEEEEeeccCCCCCCCCCCeeE
Q 024414 98 KRRMLHVVYRVGDLDRTIKFYTECLGM-KLLRKRDIPEEKYTNAFL----GYGPEDSHFVIELTYNYGVDKYDIGTGFGH 172 (268)
Q Consensus 98 ~~~l~HV~l~V~Dle~a~~FY~~vLG~-~~~~~~~~~~~~~~~~~l----~~g~~~~~~~lel~~~~~~~~~~~g~g~~h 172 (268)
...++||+++|.+.+.|.+|.+..+-. ++.......+.....+-+ .+++.. .-++|+.++.. ..| .-.|--|
T Consensus 37 ~~~~DHialR~n~~~tAe~w~~~l~~~G~llSen~INGRPI~l~~L~qPl~~~~w~-I~cvELP~P~~-k~Y-p~eGWEH 113 (187)
T PRK11700 37 QLEADHIALRCNQNETAERWRQGFLQCGELLSENIINGRPICLFELDQPLQVGHWS-IDCVELPYPGE-KRY-PHEGWEH 113 (187)
T ss_pred cccCcEEEEeeCCHHHHHHHHHHHHHhchhhhccccCCeeEEEEEcCCCceeCCcE-EEEEEeCCCCC-CCC-CCCCceE
Confidence 456899999999999999999887633 222222222211111111 222222 23577776543 223 3357889
Q ss_pred EEEEECC
Q 024414 173 FGIAVDD 179 (268)
Q Consensus 173 i~f~V~D 179 (268)
|-+.++-
T Consensus 114 IElVlp~ 120 (187)
T PRK11700 114 IELVLPG 120 (187)
T ss_pred EEEEecC
Confidence 9999983
No 171
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=85.67 E-value=12 Score=27.49 Aligned_cols=79 Identities=19% Similarity=0.218 Sum_probs=49.7
Q ss_pred EEEEECCHHHHHHHHHH-cCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEeCCC------CCCceeEEEEcCCHHHHH
Q 024414 173 FGIAVDDVAKTVELIKA-KGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT------PEPLCQVMLRVGDLDRSI 245 (268)
Q Consensus 173 i~f~V~Did~~~~~L~~-~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~~~~------~~~l~~v~L~v~d~~~s~ 245 (268)
+-+.|.|++++.+..++ .|...... .+. ...+..++|..+.+++.... .....|+.+.+.+.+...
T Consensus 2 ~~l~v~d~~~a~~FY~~~lg~~~~~~-----~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 74 (114)
T cd07261 2 VLLYVEDPAASAEFYSELLGREPVEL-----SPT--FALFVLGSGVKLGLWSRHTVEPASDATGGGSELAFMVDDGAAVD 74 (114)
T ss_pred EEEEECCHHHHHHHHHHHcCCCccCC-----CCc--eEEEEeCCCcEEEEeeccccCCCCCCCCCceEEEEEcCCHHHHH
Confidence 56889999999888865 67654321 111 24455567888888876531 234679999998755555
Q ss_pred HHHHH--hcCCeEee
Q 024414 246 NFYEQ--AFGMELLR 258 (268)
Q Consensus 246 ~FY~~--vlG~~~~~ 258 (268)
+.+.+ -.|-++..
T Consensus 75 ~~~~~~~~~g~~v~~ 89 (114)
T cd07261 75 ALYAEWQAKGVKIIQ 89 (114)
T ss_pred HHHHHHHHCCCeEec
Confidence 55543 25655543
No 172
>PF06185 YecM: YecM protein; InterPro: IPR010393 This family consists of several bacterial YecM proteins of unknown function.; PDB: 1K4N_A.
Probab=85.60 E-value=7.8 Score=32.51 Aligned_cols=89 Identities=19% Similarity=0.248 Sum_probs=45.6
Q ss_pred cCceeeEEEEEeCCHHHHHHHHHhhcCC-EEEEEecCCCCceeEEEE----eeCCCCceEEEEEeeccCCCCCCCCCCee
Q 024414 97 DKRRMLHVVYRVGDLDRTIKFYTECLGM-KLLRKRDIPEEKYTNAFL----GYGPEDSHFVIELTYNYGVDKYDIGTGFG 171 (268)
Q Consensus 97 ~~~~l~HV~l~V~Dle~a~~FY~~vLG~-~~~~~~~~~~~~~~~~~l----~~g~~~~~~~lel~~~~~~~~~~~g~g~~ 171 (268)
....+|||+++|.+.+.|.+|-+..+-. ++.......+......-+ .+++. ..-++|+.++.. ..| .-.|--
T Consensus 31 ~~~~~DHialRvn~~~~A~~~~~~l~~~G~llSen~INGRPI~l~~L~qPL~~~~~-~I~~vELP~P~~-K~Y-p~eGWE 107 (185)
T PF06185_consen 31 SQYEIDHIALRVNSNETAERWKQALLQCGELLSENMINGRPICLFKLNQPLQFGGW-SIDCVELPYPKD-KRY-PQEGWE 107 (185)
T ss_dssp TT-EEEEEEEE-S-HHHHHHHHHHHTTTEEEEEEEEETTEEEEEEEEEEEEEETTE-EEEEEEEE---S-S---SS-EEE
T ss_pred cccCCcEEEEecCCHHHHHHHHHHHHHhChhhhhceeCCeeEEEEEcCCchhcCCe-eEEEEEeCCCCC-CCC-CCCCce
Confidence 3557899999999999999999998854 333333323322212222 22322 223577776544 222 335888
Q ss_pred EEEEEECC-HHHHHHHHH
Q 024414 172 HFGIAVDD-VAKTVELIK 188 (268)
Q Consensus 172 hi~f~V~D-id~~~~~L~ 188 (268)
||-|.++- .+...+++.
T Consensus 108 HIE~Vip~~~~~~~~~~~ 125 (185)
T PF06185_consen 108 HIEFVIPSDAQTLLEQAL 125 (185)
T ss_dssp EEEEE--S-GGGHHHHHH
T ss_pred EEEEEecCCHHHHHHHHH
Confidence 99999983 444444443
No 173
>cd07268 Glo_EDI_BRP_like_4 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=85.41 E-value=12 Score=30.17 Aligned_cols=76 Identities=20% Similarity=0.314 Sum_probs=43.6
Q ss_pred eeEEEEEeCCHHHHHHHHHhhcCC-EEEEEecCCCCceeEEEE----eeCCCCceEEEEEeeccCCCCCCCCCCeeEEEE
Q 024414 101 MLHVVYRVGDLDRTIKFYTECLGM-KLLRKRDIPEEKYTNAFL----GYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGI 175 (268)
Q Consensus 101 l~HV~l~V~Dle~a~~FY~~vLG~-~~~~~~~~~~~~~~~~~l----~~g~~~~~~~lel~~~~~~~~~~~g~g~~hi~f 175 (268)
+|||+++|.+.+.|.+|.+..+-. ++.......+.....+-+ .+++.. .-++||.++.. ..| .-.|--||-+
T Consensus 2 ~DHialR~n~~~~A~~w~~~l~~~G~llSen~INGRPI~l~~L~qPl~~~~~~-I~cvELP~P~~-k~Y-p~eGWEHIE~ 78 (149)
T cd07268 2 IDHIALRVNENQTAERWKEGLLQCGELLSENEINGRPIALIKLEKPLQFAGWS-ISIVELPFPKD-KKY-PQEGWEHIEI 78 (149)
T ss_pred CceEEEeeCCHHHHHHHHHHHHHhchhhhccccCCeeEEEEEcCCCceeCCcE-EEEEEeCCCCC-CCC-CCCCceEEEE
Confidence 689999999999999999987743 222222222211111111 222222 23567776543 222 3458889999
Q ss_pred EECC
Q 024414 176 AVDD 179 (268)
Q Consensus 176 ~V~D 179 (268)
.++-
T Consensus 79 Vlp~ 82 (149)
T cd07268 79 VIPS 82 (149)
T ss_pred EecC
Confidence 9983
No 174
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=85.02 E-value=13 Score=27.35 Aligned_cols=78 Identities=19% Similarity=0.292 Sum_probs=46.0
Q ss_pred EEEEECCHHHHHHHHHHc-CCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEeCC--------C-C--CCceeEEEEcC-
Q 024414 173 FGIAVDDVAKTVELIKAK-GGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP--------T-P--EPLCQVMLRVG- 239 (268)
Q Consensus 173 i~f~V~Did~~~~~L~~~-G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~~~--------~-~--~~l~~v~L~v~- 239 (268)
|.|.|+|++++.+...+. |..+... +.+ ...++.. +|..+++++... . + ..-.++.+.+.
T Consensus 2 i~l~v~d~~~a~~FY~~~lg~~~~~~----~~~--~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (121)
T cd07251 2 ITLGVADLARSRAFYEALLGWKPSAD----SND--GVAFFQL-GGLVLALFPREELAKDAGVPVPPPGFSGITLAHNVRS 74 (121)
T ss_pred eeEeeCCHHHHHHHHHHhcCceeccc----CCC--ceEEEEc-CCeEEEEecchhhhhhcCCCCCCCCccceEEEEEcCC
Confidence 689999999999998876 8776433 111 2344444 777888876431 0 1 12234555554
Q ss_pred --CHHHHHHHHHHhcCCeEee
Q 024414 240 --DLDRSINFYEQAFGMELLR 258 (268)
Q Consensus 240 --d~~~s~~FY~~vlG~~~~~ 258 (268)
|++++.+-..+ .|.++..
T Consensus 75 ~~d~~~~~~~l~~-~G~~~~~ 94 (121)
T cd07251 75 EEEVDAVLARAAA-AGATIVK 94 (121)
T ss_pred HHHHHHHHHHHHh-CCCEEec
Confidence 55555555544 5666543
No 175
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=83.37 E-value=15 Score=26.63 Aligned_cols=75 Identities=20% Similarity=0.232 Sum_probs=52.6
Q ss_pred EEEECCHHHHHHHHHH-cCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEeCCCC----CCceeEEEEcCCHHHHHHHH
Q 024414 174 GIAVDDVAKTVELIKA-KGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPTP----EPLCQVMLRVGDLDRSINFY 248 (268)
Q Consensus 174 ~f~V~Did~~~~~L~~-~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~~~~~----~~l~~v~L~v~d~~~s~~FY 248 (268)
.+.|.|+++..+-.++ .|.++..... . . ...++.. ++..+.|.+..... ..-.|+.+.+.|+++..+-.
T Consensus 3 ~i~v~d~~~s~~FY~~~lg~~~~~~~~---~-~-~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 76 (112)
T cd08349 3 VLPVSDIERSLAFYRDVLGFEVDWEHP---E-P-GYAFLSR-GGAQLMLSEHDGDEPVPLGRGGSVYIEVEDVDALYAEL 76 (112)
T ss_pred EEEECCHHHHHHHHHhccCeEEEEEcC---C-C-cEEEEEe-CCEEEEEeccCCCCCCCCCCcEEEEEEeCCHHHHHHHH
Confidence 5789999999999998 8988754321 1 1 2344444 56777777655431 24457889999999999988
Q ss_pred HHhcCCe
Q 024414 249 EQAFGME 255 (268)
Q Consensus 249 ~~vlG~~ 255 (268)
.+ .|.+
T Consensus 77 ~~-~G~~ 82 (112)
T cd08349 77 KA-KGAD 82 (112)
T ss_pred HH-cCCc
Confidence 77 6776
No 176
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=83.12 E-value=16 Score=26.89 Aligned_cols=83 Identities=17% Similarity=0.113 Sum_probs=53.2
Q ss_pred EEEEECCHHHHHHHHHH-cCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEeCCC-------CCCceeEEEEcCCHHHH
Q 024414 173 FGIAVDDVAKTVELIKA-KGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT-------PEPLCQVMLRVGDLDRS 244 (268)
Q Consensus 173 i~f~V~Did~~~~~L~~-~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~~~~-------~~~l~~v~L~v~d~~~s 244 (268)
..|.|.|++++.+...+ .|.++..... .+.+.....++.- .|..+.+++..+. .....|+.+.|.|+++.
T Consensus 5 ~~l~v~d~~~a~~FY~~~lG~~~~~~~~-~~~~~~~~~~l~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~ 82 (122)
T cd07246 5 PYLIVRDAAAAIDFYKKAFGAEELERMP-DDDGRVMHAELRI-GDSVLMLADEFPEHGSPASWGGTPVSLHLYVEDVDAT 82 (122)
T ss_pred EEEEECCHHHHHHHHHHhhCCEEEEEEe-CCCCCEEEEEEEE-CCEEEEEecCCcccCCCCCCCCceEEEEEEeCCHHHH
Confidence 56889999999999875 7987654322 1223223333433 4557777765432 23457899999999987
Q ss_pred HHHHHHhcCCeEee
Q 024414 245 INFYEQAFGMELLR 258 (268)
Q Consensus 245 ~~FY~~vlG~~~~~ 258 (268)
.+-..+ .|.++..
T Consensus 83 ~~~l~~-~G~~~~~ 95 (122)
T cd07246 83 FARAVA-AGATSVM 95 (122)
T ss_pred HHHHHH-CCCeEec
Confidence 776654 4766543
No 177
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=83.00 E-value=1.3 Score=40.80 Aligned_cols=28 Identities=39% Similarity=0.667 Sum_probs=25.1
Q ss_pred CCceeEEEEcCCHHHHHHHHHHhcCCeE
Q 024414 229 EPLCQVMLRVGDLDRSINFYEQAFGMEL 256 (268)
Q Consensus 229 ~~l~~v~L~v~d~~~s~~FY~~vlG~~~ 256 (268)
...-+|+|.|.|++++.+||+++||+..
T Consensus 246 ~~~IfVNLpV~DL~rS~~FYt~LF~~n~ 273 (357)
T PRK01037 246 PKTFSVVLEVQDLRRAKKFYSKMFGLEC 273 (357)
T ss_pred CceEEEEeeeCCHHHHHHHHHHHhCCCC
Confidence 4567999999999999999999999873
No 178
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=81.19 E-value=19 Score=26.62 Aligned_cols=78 Identities=23% Similarity=0.210 Sum_probs=47.6
Q ss_pred EEEEEECCHHHHHHHHHH-cCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEeC------------CCCCCceeEE--E
Q 024414 172 HFGIAVDDVAKTVELIKA-KGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG------------PTPEPLCQVM--L 236 (268)
Q Consensus 172 hi~f~V~Did~~~~~L~~-~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~~------------~~~~~l~~v~--L 236 (268)
|+.|.|+|+++..+...+ .|..+..... . .+++ +..|..+.+.... .....+.|+. +
T Consensus 2 Hi~l~v~Dl~~s~~FY~~~lG~~~~~~~~------~-~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 73 (125)
T cd08357 2 HLAIPVRDLEAARAFYGDVLGCKEGRSSE------T-WVDF-DFFGHQLVAHLSPNFNADASDNAVDGHPVPVPHFGLIL 73 (125)
T ss_pred eEEEEeCCHHHHHHHHHHhcCCEEeeccC------C-cccc-cccCcEEEEEeccCCCcccccCCCCCCccCCceEEEEE
Confidence 899999999999999986 7987753311 0 1112 2234444333211 0112345654 4
Q ss_pred EcCCHHHHHHHHHHhcCCeEee
Q 024414 237 RVGDLDRSINFYEQAFGMELLR 258 (268)
Q Consensus 237 ~v~d~~~s~~FY~~vlG~~~~~ 258 (268)
.+.|+++..+...+ .|.++..
T Consensus 74 ~~~dv~~~~~~l~~-~g~~~~~ 94 (125)
T cd08357 74 SEEEFDALAERLEA-AGVEFLI 94 (125)
T ss_pred eHHHHHHHHHHHHH-CCCcEec
Confidence 56889988888877 7877653
No 179
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=77.93 E-value=26 Score=26.08 Aligned_cols=76 Identities=12% Similarity=0.128 Sum_probs=52.1
Q ss_pred EEEEEECCHHHHHHHHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEeCCC-C-CCceeEEEEcCCHHHHHHHHH
Q 024414 172 HFGIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT-P-EPLCQVMLRVGDLDRSINFYE 249 (268)
Q Consensus 172 hi~f~V~Did~~~~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~~~~-~-~~l~~v~L~v~d~~~s~~FY~ 249 (268)
...+.|.|+++..+...+.|.+...... . ...++.. .|..++|++.... + ..-.++.+.|.|+++..+-..
T Consensus 5 ~~~l~v~Dl~~s~~FY~~lG~~~~~~~~---~---~~~~~~~-~~~~l~l~~~~~~~~~~~~~~~~~~v~dvd~~~~~l~ 77 (120)
T cd08350 5 IPNLPSRDLDATEAFYARLGFSVGYRQA---A---GYMILRR-GDLELHFFAHPDLDPATSPFGCCLRLPDVAALHAEFR 77 (120)
T ss_pred cceeEcCCHHHHHHHHHHcCCEEEecCC---C---CEEEEEc-CCEEEEEEecCcCCCCCCcceEEEEeCCHHHHHHHHH
Confidence 4688999999999998889988654321 1 2344443 4557888865421 1 223578899999999999886
Q ss_pred HhcCCe
Q 024414 250 QAFGME 255 (268)
Q Consensus 250 ~vlG~~ 255 (268)
+ .|.+
T Consensus 78 ~-~G~~ 82 (120)
T cd08350 78 A-AGLP 82 (120)
T ss_pred H-hCcc
Confidence 6 6654
No 180
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=77.53 E-value=26 Score=25.82 Aligned_cols=79 Identities=19% Similarity=0.227 Sum_probs=52.1
Q ss_pred EEEEEECCHHHHHHHHHH-cCCeEeeCCcccCCCCeEEEEEECCCC-CEEEEEEeCCC---------CCCceeEEEEcCC
Q 024414 172 HFGIAVDDVAKTVELIKA-KGGKVTREPGPVKGGNTVIAFIEDPDG-YKFELLERGPT---------PEPLCQVMLRVGD 240 (268)
Q Consensus 172 hi~f~V~Did~~~~~L~~-~G~~i~~~p~~~~~G~~~~~~~~DPdG-~~iEl~e~~~~---------~~~l~~v~L~v~d 240 (268)
+..+.|.|+++..+...+ .|.+..... + ...++..+++ ..+.+...... ...-.|+.+.|.|
T Consensus 4 ~~~l~v~D~~~s~~FY~~~lG~~~~~~~-----~--~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~v~d 76 (119)
T cd08359 4 YPVIVTDDLAETADFYVRHFGFTVVFDS-----D--WYVSLRSPDGGVELAFMLPGHETVPAAQYQFQGQGLILNFEVDD 76 (119)
T ss_pred eeEEEECCHHHHHHHHHHhhCcEEEecc-----C--cEEEEecCCCceEEEEccCCCCCCcchhcccCCceEEEEEEECC
Confidence 578999999999998865 888775431 1 2344544444 45555543211 1122488999999
Q ss_pred HHHHHHHHHHhcCCeEee
Q 024414 241 LDRSINFYEQAFGMELLR 258 (268)
Q Consensus 241 ~~~s~~FY~~vlG~~~~~ 258 (268)
+++..+...+ .|.++..
T Consensus 77 id~~~~~l~~-~G~~~~~ 93 (119)
T cd08359 77 VDAEYERLKA-EGLPIVL 93 (119)
T ss_pred HHHHHHHHHh-cCCCeee
Confidence 9999999987 5766543
No 181
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=74.23 E-value=12 Score=26.69 Aligned_cols=46 Identities=20% Similarity=0.219 Sum_probs=34.4
Q ss_pred CHHHHHHHHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEeCC
Q 024414 179 DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP 226 (268)
Q Consensus 179 Did~~~~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~~~ 226 (268)
.++++.+.+.+.|+.+.. .+..+++.+.+...|.||..+|+.=.+.
T Consensus 30 ~~~~~~~~l~~~G~~v~~--ve~~~~g~yev~~~~~dG~~~ev~vD~~ 75 (83)
T PF13670_consen 30 SIEQAVAKLEAQGYQVRE--VEFDDDGCYEVEARDKDGKKVEVYVDPA 75 (83)
T ss_pred CHHHHHHHHHhcCCceEE--EEEcCCCEEEEEEEECCCCEEEEEEcCC
Confidence 689999999999996543 2332234578889999999999975543
No 182
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=71.08 E-value=29 Score=24.91 Aligned_cols=46 Identities=15% Similarity=0.189 Sum_probs=32.4
Q ss_pred cCceeeEEEEEeCCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEe
Q 024414 97 DKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLG 143 (268)
Q Consensus 97 ~~~~l~HV~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~ 143 (268)
...+..|+.+.|.|++++.+...+ +|.++...-.....+...+++.
T Consensus 53 ~~~~~~~~~~~v~dv~~~~~~l~~-~G~~~~~~~~~~~~g~~~~~~~ 98 (108)
T PF12681_consen 53 PPGGGFHLCFEVEDVDALYERLKE-LGAEIVTEPRDDPWGQRSFYFI 98 (108)
T ss_dssp SSSSEEEEEEEESHHHHHHHHHHH-TTSEEEEEEEEETTSEEEEEEE
T ss_pred CCCceeEEEEEEcCHHHHHHHHHH-CCCeEeeCCEEcCCCeEEEEEE
Confidence 355788999999999999999987 8998765433223333344443
No 183
>PF14507 CppA_C: CppA C-terminal; PDB: 3E0R_D.
Probab=63.34 E-value=2.9 Score=31.51 Aligned_cols=22 Identities=36% Similarity=0.670 Sum_probs=9.5
Q ss_pred ceeEEEEcCCHHHHHHHHHHhcC
Q 024414 231 LCQVMLRVGDLDRSINFYEQAFG 253 (268)
Q Consensus 231 l~~v~L~v~d~~~s~~FY~~vlG 253 (268)
+..+.|+|.| +++.+||+++||
T Consensus 6 ~e~i~LNV~d-~~~~~fy~~~f~ 27 (101)
T PF14507_consen 6 FESIELNVPD-AKSQSFYQSIFG 27 (101)
T ss_dssp E-EEEEEE-T--T---S--H---
T ss_pred EEEEEEeCCC-hhHHHHHHhccc
Confidence 3568999999 889999999887
No 184
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=58.18 E-value=10 Score=29.08 Aligned_cols=26 Identities=31% Similarity=0.791 Sum_probs=18.5
Q ss_pred CCHHHHHHHHHHhcCC-eEeeeecCCC
Q 024414 239 GDLDRSINFYEQAFGM-ELLRKRDNPE 264 (268)
Q Consensus 239 ~d~~~s~~FY~~vlG~-~~~~~~~~p~ 264 (268)
++-++|.+||.++||- ++......|+
T Consensus 11 g~a~eA~~fY~~vf~~~~i~~~~~~~~ 37 (116)
T PF06983_consen 11 GNAEEALEFYKEVFGGSEIMTFGDYPD 37 (116)
T ss_dssp S-HHHHHHHHHHHSTTEEEEEEEE-TT
T ss_pred CCHHHHHHHHHHHcCCCEEEEEeECCC
Confidence 7999999999999994 4455555554
No 185
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=54.88 E-value=83 Score=23.11 Aligned_cols=80 Identities=20% Similarity=0.218 Sum_probs=47.2
Q ss_pred eEEEEEECCHHHHHHHHHH-cCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEeC--------------C-CCCCceeE
Q 024414 171 GHFGIAVDDVAKTVELIKA-KGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG--------------P-TPEPLCQV 234 (268)
Q Consensus 171 ~hi~f~V~Did~~~~~L~~-~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~~--------------~-~~~~l~~v 234 (268)
.|+.|.|.|++++.+...+ .|.+...... .+. ...+. ..+..+.+.... + ....-.++
T Consensus 2 ~~~~l~v~D~~~s~~FY~~~lG~~~~~~~~---~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (125)
T cd07264 2 GYTIIYVEDVEKTLEFYERAFGFERRFLHE---SGD--YGELE-TGETTLAFASHDLAESNLKGGFVKADPAQPPAGFEI 75 (125)
T ss_pred ceEEEEEcCHHHHHHHHHHhhCCeEEeecC---CCc--EEEec-CCcEEEEEEcccccccccccCccCCccccCCCcEEE
Confidence 4899999999999998888 6987643211 111 11111 122233222211 1 11123478
Q ss_pred EEEcCCHHHHHHHHHHhcCCeEe
Q 024414 235 MLRVGDLDRSINFYEQAFGMELL 257 (268)
Q Consensus 235 ~L~v~d~~~s~~FY~~vlG~~~~ 257 (268)
.+.|.|++++.+...+ .|.++.
T Consensus 76 ~~~v~di~~~~~~l~~-~G~~~~ 97 (125)
T cd07264 76 AFVTDDVAAAFARAVE-AGAVLV 97 (125)
T ss_pred EEEcCCHHHHHHHHHH-cCCEec
Confidence 8999999999888865 566653
No 186
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=53.40 E-value=32 Score=22.44 Aligned_cols=26 Identities=19% Similarity=0.461 Sum_probs=22.6
Q ss_pred CeeEEEEEECCHHHHHHHHHHcCCeE
Q 024414 169 GFGHFGIAVDDVAKTVELIKAKGGKV 194 (268)
Q Consensus 169 g~~hi~f~V~Did~~~~~L~~~G~~i 194 (268)
+...+.|.+++.+.+.+.|+++|+++
T Consensus 39 ~~~~v~~~ve~~~~~~~~L~~~G~~v 64 (65)
T cd04882 39 GKALLIFRTEDIEKAIEVLQERGVEL 64 (65)
T ss_pred CeEEEEEEeCCHHHHHHHHHHCCceE
Confidence 45578999999999999999999875
No 187
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=53.37 E-value=25 Score=27.39 Aligned_cols=83 Identities=28% Similarity=0.447 Sum_probs=49.3
Q ss_pred CeeEEEEEECCHHHHHHHHHHcCCeEee------CCcccCCCCeEEE-EEECCCCCE---EEEEEeCCCCCCceeEEEEc
Q 024414 169 GFGHFGIAVDDVAKTVELIKAKGGKVTR------EPGPVKGGNTVIA-FIEDPDGYK---FELLERGPTPEPLCQVMLRV 238 (268)
Q Consensus 169 g~~hi~f~V~Did~~~~~L~~~G~~i~~------~p~~~~~G~~~~~-~~~DPdG~~---iEl~e~~~~~~~l~~v~L~v 238 (268)
.++-+-+.|++.|.+++.|.++|+.+.. +..+.|+|-.+.. .+.|.|=|. ..|++.. .+ .-+.++|
T Consensus 41 dFGIiRmvV~~~d~A~~~Lee~gF~Vr~~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek--~K--Alli~r~ 116 (142)
T COG4747 41 DFGIIRMVVDRPDEAHSVLEEAGFTVRETDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEK--QK--ALLIVRV 116 (142)
T ss_pred CcceEEEEcCChHHHHHHHHHCCcEEEeeeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecC--ce--EEEEEEh
Confidence 3446888999999999999999987632 2223333322111 122333221 2233222 11 2356688
Q ss_pred CCHHHHHHHHHHhcCCeE
Q 024414 239 GDLDRSINFYEQAFGMEL 256 (268)
Q Consensus 239 ~d~~~s~~FY~~vlG~~~ 256 (268)
.|++++..-.++ .|.++
T Consensus 117 ed~d~~~~aLed-~gi~~ 133 (142)
T COG4747 117 EDIDRAIKALED-AGIKL 133 (142)
T ss_pred hHHHHHHHHHHH-cCCee
Confidence 999999999987 66554
No 188
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=46.43 E-value=33 Score=24.78 Aligned_cols=29 Identities=21% Similarity=0.502 Sum_probs=24.8
Q ss_pred CeeEEEEEECCHHHHHHHHHH-cCCeEeeC
Q 024414 169 GFGHFGIAVDDVAKTVELIKA-KGGKVTRE 197 (268)
Q Consensus 169 g~~hi~f~V~Did~~~~~L~~-~G~~i~~~ 197 (268)
++.|+++.|+|+++..+...+ .|.+....
T Consensus 2 ~l~hv~l~v~dl~~s~~FY~~~LG~~~~~~ 31 (138)
T COG0346 2 GIHHVTLAVPDLEASIDFYTDVLGLRLVKD 31 (138)
T ss_pred ceEEEEEeeCCHhHhHHHHHhhcCCeeeee
Confidence 467999999999999999988 88887654
No 189
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=45.29 E-value=57 Score=21.81 Aligned_cols=27 Identities=15% Similarity=0.074 Sum_probs=20.3
Q ss_pred eEEEEEE--CCHHHHHHHHHHcCCeEeeC
Q 024414 171 GHFGIAV--DDVAKTVELIKAKGGKVTRE 197 (268)
Q Consensus 171 ~hi~f~V--~Did~~~~~L~~~G~~i~~~ 197 (268)
..+.|.+ +|.+.+.+.|+++|+++..+
T Consensus 43 ~~v~i~v~~~~~~~~~~~L~~~G~~v~~~ 71 (72)
T cd04883 43 KILVFRVQTMNPRPIIEDLRRAGYEVLWP 71 (72)
T ss_pred EEEEEEEecCCHHHHHHHHHHCCCeeeCC
Confidence 3445555 58889999999999987643
No 190
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=44.69 E-value=83 Score=22.03 Aligned_cols=47 Identities=13% Similarity=0.102 Sum_probs=32.9
Q ss_pred EEEEECC----HHHHHHHHHHcCCeEeeCCcccCC-CCeEEEEEECCCCCEE
Q 024414 173 FGIAVDD----VAKTVELIKAKGGKVTREPGPVKG-GNTVIAFIEDPDGYKF 219 (268)
Q Consensus 173 i~f~V~D----id~~~~~L~~~G~~i~~~p~~~~~-G~~~~~~~~DPdG~~i 219 (268)
+-+...| +.++.+-+.+.|+.+........+ .-.-.||+.|.+|+.+
T Consensus 4 iev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl 55 (72)
T cd04895 4 VKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKL 55 (72)
T ss_pred EEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCC
Confidence 4455555 678888999999988655443322 2345789999999876
No 191
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.30 E-value=73 Score=27.61 Aligned_cols=35 Identities=20% Similarity=0.448 Sum_probs=23.9
Q ss_pred CCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCC
Q 024414 109 GDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGP 146 (268)
Q Consensus 109 ~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~ 146 (268)
.|+.+++.||.+.||+++....+ +....+|-+..+
T Consensus 145 a~~~e~a~wy~dyLGleie~~hg---evikfiFTnIdp 179 (246)
T KOG4657|consen 145 ADIHEAASWYNDYLGLEIEAGHG---EVIKFIFTNIDP 179 (246)
T ss_pred hccHHHHHHHHHhcCceeeeccC---ceEEEEEeccCC
Confidence 47888999999999999875432 223345555443
No 192
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=41.07 E-value=55 Score=29.68 Aligned_cols=45 Identities=18% Similarity=0.284 Sum_probs=33.5
Q ss_pred eEEEEEe-----CCHHHHHHHHHhhcCCEEEEEecCCCCceeEEEEeeCCC
Q 024414 102 LHVVYRV-----GDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPE 147 (268)
Q Consensus 102 ~HV~l~V-----~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~ 147 (268)
+|++|.+ ..++.-.+++.. ||++..+.++.+..+....++.-.+.
T Consensus 36 dH~A~RT~~~~~~gl~~lar~F~~-lGy~~~G~Y~f~~kkl~a~~f~p~d~ 85 (302)
T PF07063_consen 36 DHGAFRTFGGPPYGLASLARIFAA-LGYEPVGYYDFPAKKLHATWFRPPDP 85 (302)
T ss_dssp EEEEEEEECTSHCCHHHHHHHHHT-TTEEEEEEEEEGGGTEEEEEEEETSC
T ss_pred eeeEEEecCCCchhHHHHHHHHHH-cCCEEcceecccccCceEEEecCCCC
Confidence 8999982 267788888875 99999988887776666666655443
No 193
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=38.11 E-value=1.2e+02 Score=21.45 Aligned_cols=47 Identities=15% Similarity=0.135 Sum_probs=33.1
Q ss_pred EEEEECC----HHHHHHHHHHcCCeEeeCCcccCC-CCeEEEEEECCCCCEE
Q 024414 173 FGIAVDD----VAKTVELIKAKGGKVTREPGPVKG-GNTVIAFIEDPDGYKF 219 (268)
Q Consensus 173 i~f~V~D----id~~~~~L~~~G~~i~~~p~~~~~-G~~~~~~~~DPdG~~i 219 (268)
+.+.+.| +-.+...+.+.|+.+........+ --...||++|.+|..+
T Consensus 4 veV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl 55 (75)
T cd04897 4 VTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTL 55 (75)
T ss_pred EEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCcc
Confidence 4556666 667888899999988655443322 1346799999999876
No 194
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=37.51 E-value=41 Score=26.86 Aligned_cols=85 Identities=19% Similarity=0.244 Sum_probs=52.3
Q ss_pred CCeeEEEEEECCHHHHHHHHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEeCCC---------CCCceeEEEEc
Q 024414 168 TGFGHFGIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT---------PEPLCQVMLRV 238 (268)
Q Consensus 168 ~g~~hi~f~V~Did~~~~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~~~~---------~~~l~~v~L~v 238 (268)
.|+.+|-|.+++-+++...+.+.|.+...... .+.+++.--.+..|-|-+.+.. ...+|-+.|+|
T Consensus 8 ~G~dFvEFa~~~~~~l~~~~~~lGF~~~a~hr------sk~v~l~rQG~I~~vln~ep~s~a~~~~~~HG~sv~aiafrV 81 (139)
T PF14696_consen 8 DGFDFVEFAVPDAQALAQLFTALGFQPVARHR------SKDVTLYRQGDINFVLNSEPDSFAAEFAAQHGPSVCAIAFRV 81 (139)
T ss_dssp EEEEEEEEE-SSTTSCHHHHCCCCEEEECCEC------CCSEEEEEETTEEEEEEEESTSCHHHHHHHHSSEEEEEEEEE
T ss_pred CCeEEEEEecCCHHHHHHHHHHhCcceEEecC------CcceEEEEeCCEEEEEeCCCcchHHHHHHhcCCEEEEEEEEe
Confidence 47889999999988888899999987654321 1223333323334434443322 24689999999
Q ss_pred CCHHHHHHHHHHhcCCeEeee
Q 024414 239 GDLDRSINFYEQAFGMELLRK 259 (268)
Q Consensus 239 ~d~~~s~~FY~~vlG~~~~~~ 259 (268)
.|.+++.+-=.. +|-+....
T Consensus 82 ~Da~~A~~rA~~-~GA~~~~~ 101 (139)
T PF14696_consen 82 DDAAAAYERAVA-LGAEPVQE 101 (139)
T ss_dssp S-HHHHHHHHHH-TT--EEEE
T ss_pred CCHHHHHHHHHH-cCCcCccc
Confidence 999999887666 45444333
No 195
>PF09066 B2-adapt-app_C: Beta2-adaptin appendage, C-terminal sub-domain; InterPro: IPR015151 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. This entry represents a subdomain of the appendage (ear) domain of beta-adaptin from AP clathrin adaptor complexes. This domain has a three-layer arrangement, alpha-beta-alpha, with a bifurcated antiparallel beta-sheet []. This domain is required for binding to clathrin, and its subsequent polymerisation. Furthermore, a hydrophobic patch present in the domain also binds to a subset of D-phi-F/W motif-containing proteins that are bound by the alpha-adaptin appendage domain (epsin, AP180, eps15) []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 1E42_B 2G30_A 2IV9_B 2IV8_A 3HS9_A 3H1Z_A.
Probab=36.35 E-value=1.7e+02 Score=21.86 Aligned_cols=71 Identities=15% Similarity=0.171 Sum_probs=38.6
Q ss_pred ECCHHHHHHHHHHcCCeEeeCCcccCCCCeEEEEE--ECCCCCEEEEEEeCCCCCCceeEEEEcCCHHHHHHHHH
Q 024414 177 VDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFI--EDPDGYKFELLERGPTPEPLCQVMLRVGDLDRSINFYE 249 (268)
Q Consensus 177 V~Did~~~~~L~~~G~~i~~~p~~~~~G~~~~~~~--~DPdG~~iEl~e~~~~~~~l~~v~L~v~d~~~s~~FY~ 249 (268)
..+.+.+.++|++.++-..-. +..+++ ...+|+ .+..|..+-+--.-....+-+.+.+++.+.+-+..|+.
T Consensus 35 ~~~~~~i~~~L~~~nI~~iA~-~~~~~~-~~~~y~s~~~~~~~~fL~El~~~~~~~~~~v~vK~~~~~~~~~f~~ 107 (114)
T PF09066_consen 35 VPSPDAIEEKLQANNIFTIAS-GKVDNG-QKFFYFSAKTTNGIWFLVELTIDPGSPSVKVTVKSENPEMAPLFLQ 107 (114)
T ss_dssp ---HHHHHHHHHCTT-EEEEE-EECTT--EEEEEEEEEBTTS-EEEEEEEE-TT-SSEEEEEEESSCCCHHHHHH
T ss_pred CCcHHHHHHHHHHCCEEEEec-CCCCcc-ccEEEEEEEcCCCcEEEEEEEEcCCCccEEEEEecCCHHHHHHHHH
Confidence 357899999999999765422 223222 333333 46666654322222333457899999988866666653
No 196
>TIGR00318 cyaB adenylyl cyclase CyaB, putative. The protein CyaB from Aeromonas hydrophila is a second adenylyl cyclase from that species, as demonstrated by complementation in E. coli and by assay of the enzymatic properties of purified recombinant protein. It has no detectable homology to any other protein of known function, and has several unusual properties, including an optimal temperature of 65 degrees and an optimal pH of 9.5. A cluster of uncharaterized archaeal homologs may be orthologous and serve (under certain circumstances) to produce the regulatory metabolite cyclic AMP (cAMP).
Probab=34.10 E-value=2.6e+02 Score=22.80 Aligned_cols=77 Identities=17% Similarity=0.324 Sum_probs=46.0
Q ss_pred EEEEECCHHHHHHHHHHcCCeEeeCCcccCCCCeEEEEEECCCCC------EEEEEE---------eCCCC-CC---cee
Q 024414 173 FGIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGY------KFELLE---------RGPTP-EP---LCQ 233 (268)
Q Consensus 173 i~f~V~Did~~~~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~------~iEl~e---------~~~~~-~~---l~~ 233 (268)
+=+.+.|++++.++|.+.|........ ..-.|+..|++. .+.+-+ ..|.. .. -..
T Consensus 6 ~K~~v~d~~~~~~~L~~~g~~~~~~~~------q~D~Yfd~p~~~l~~~~~~LRiR~~~~~~~lT~Kgp~~~~~~~~~~E 79 (174)
T TIGR00318 6 VKAKIPDKEKVVEKLKNKGFKFIKKEF------QHDIYFSNPCRDFASTDEALRIRKLTGEKFVTYKGPKIDNESKTRKE 79 (174)
T ss_pred EEEEcCCHHHHHHHHHhcCcccccccc------eEEEeecCCCcchhhCCcEEEEEEcCCcEEEEEeCCccCCcceEEEE
Confidence 345678999999999999976543211 122444444421 122221 11211 11 124
Q ss_pred EEEEcCCHHHHHHHHHHhcCCeE
Q 024414 234 VMLRVGDLDRSINFYEQAFGMEL 256 (268)
Q Consensus 234 v~L~v~d~~~s~~FY~~vlG~~~ 256 (268)
+...|.|.+...+.+. .+|++.
T Consensus 80 ~e~~v~d~~~~~~iL~-~LG~~~ 101 (174)
T TIGR00318 80 IEFKIEDIENALQILK-KLGFKK 101 (174)
T ss_pred EEEEECCHHHHHHHHH-HCCCeE
Confidence 6677899999999997 699985
No 197
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=34.08 E-value=85 Score=22.31 Aligned_cols=28 Identities=25% Similarity=0.371 Sum_probs=23.0
Q ss_pred CeeEEEEEECC----HHHHHHHHHHcCCeEee
Q 024414 169 GFGHFGIAVDD----VAKTVELIKAKGGKVTR 196 (268)
Q Consensus 169 g~~hi~f~V~D----id~~~~~L~~~G~~i~~ 196 (268)
+...+.+.|+| ++++.+.|+++|+++..
T Consensus 40 ~~v~i~ie~~~~~~~~~~i~~~L~~~G~~~~~ 71 (85)
T cd04906 40 AHIFVGVSVANGAEELAELLEDLKSAGYEVVD 71 (85)
T ss_pred eEEEEEEEeCCcHHHHHHHHHHHHHCCCCeEE
Confidence 34467889888 99999999999998753
No 198
>PHA00404 hypothetical protein
Probab=32.43 E-value=27 Score=21.38 Aligned_cols=17 Identities=47% Similarity=0.491 Sum_probs=9.7
Q ss_pred cccccCcccccccccCCC
Q 024414 7 MASSIRPSLSTFRFSSSS 24 (268)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~ 24 (268)
|+.-||| ||+.+..+|+
T Consensus 1 m~t~irp-ls~slrk~ss 17 (42)
T PHA00404 1 MVTPIRP-LSPSLRKRSS 17 (42)
T ss_pred CCccccc-CChhhcccCC
Confidence 5566788 5555444443
No 199
>COG0605 SodA Superoxide dismutase [Inorganic ion transport and metabolism]
Probab=27.32 E-value=84 Score=26.84 Aligned_cols=71 Identities=21% Similarity=0.248 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEeCCCCCCcee----------------EEEEcCCHH
Q 024414 179 DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPTPEPLCQ----------------VMLRVGDLD 242 (268)
Q Consensus 179 Did~~~~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~~~~~~~l~~----------------v~L~v~d~~ 242 (268)
.+|+..+.+.+.+..+. |.++...+.|++| .++|++-.....++.+ +..+..-.+
T Consensus 110 S~d~fk~~f~~aa~~~f--------GsGWawLv~~~~~-kL~i~~t~n~~~p~~~~~~PiL~lDvWEHAYYldY~N~R~~ 180 (204)
T COG0605 110 SFDKFKEEFTAAAASVF--------GSGWAWLVYDPDG-KLEIVSTYNQDTPLMWGSVPLLGLDVWEHAYYLDYGNRRPD 180 (204)
T ss_pred CHHHHHHHHHHHHhhCC--------CCceEEEEECCCC-cEEEEeccCCCCcccCCCCceEEecchHHHHHHHhccCcHH
Confidence 57788888888876542 4557788889999 8888887754433322 222345567
Q ss_pred HHHHHHHHhcCCeEeee
Q 024414 243 RSINFYEQAFGMELLRK 259 (268)
Q Consensus 243 ~s~~FY~~vlG~~~~~~ 259 (268)
-..+|+ ++..|+...+
T Consensus 181 Yv~afw-nvVNW~~V~~ 196 (204)
T COG0605 181 YVEAFW-NVVNWDEVEE 196 (204)
T ss_pred HHHHHH-HhcCHHHHHH
Confidence 778888 8888876443
No 200
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=26.91 E-value=2.5e+02 Score=20.43 Aligned_cols=82 Identities=18% Similarity=0.095 Sum_probs=49.7
Q ss_pred EEEEECCHHHHHHHHH-HcCCeEeeCCcccCCCCeEEEEEECCCCCEEEEEEeCC---------CCCCceeEEEEcCCHH
Q 024414 173 FGIAVDDVAKTVELIK-AKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP---------TPEPLCQVMLRVGDLD 242 (268)
Q Consensus 173 i~f~V~Did~~~~~L~-~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~e~~~---------~~~~l~~v~L~v~d~~ 242 (268)
-.|.|.|++++.+..+ ..|.++...... ..+....+.+..+++ .+.+..... ....-.++.+.|.|++
T Consensus 3 p~l~v~d~~~a~~FY~~~lG~~~~~~~~~-~~~~~~~~~l~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~d~d 80 (122)
T cd08355 3 PTLRYRDAAAAIDWLTDAFGFEERLVVPD-DDGGVAHAELRFGDG-GVMVGSVRDDYRASSARAGGAGTQGVYVVVDDVD 80 (122)
T ss_pred EEEEECCHHHHHHHHHHhcCCEEEEEEeC-CCCcEEEEEEEECCE-EEEEecCCCcccccccccCCCceEEEEEEECCHH
Confidence 4688899999999887 689887543211 122223334544433 455543221 1123468999999998
Q ss_pred HHHHHHHHhcCCeEe
Q 024414 243 RSINFYEQAFGMELL 257 (268)
Q Consensus 243 ~s~~FY~~vlG~~~~ 257 (268)
++.+-..+ .|-++.
T Consensus 81 ~~~~~l~~-~G~~v~ 94 (122)
T cd08355 81 AHYERARA-AGAEIL 94 (122)
T ss_pred HHHHHHHH-CCCEEe
Confidence 88776655 466654
No 201
>COG3102 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.75 E-value=3.7e+02 Score=22.32 Aligned_cols=84 Identities=18% Similarity=0.186 Sum_probs=43.4
Q ss_pred CceeeEEEEEeCCHHHHHHHHHhhcCC--EEEEEecCCCCceeEEEEeeC------CCCceEEEEEeeccCCCCCCCCCC
Q 024414 98 KRRMLHVVYRVGDLDRTIKFYTECLGM--KLLRKRDIPEEKYTNAFLGYG------PEDSHFVIELTYNYGVDKYDIGTG 169 (268)
Q Consensus 98 ~~~l~HV~l~V~Dle~a~~FY~~vLG~--~~~~~~~~~~~~~~~~~l~~g------~~~~~~~lel~~~~~~~~~~~g~g 169 (268)
...++|++|.|.+-.-|..|-...+-+ .+.. .-..+.. ...+.+. .... -++|+..+.. ..|+. .|
T Consensus 37 ~~~~DHIaLRvh~~qtAk~wr~~~lqcG~~lS~-n~iNGRp--I~li~l~~Pl~v~~w~i-d~iELP~P~~-K~YP~-eg 110 (185)
T COG3102 37 QYTADHIALRVHQEQTAKRWRRGLLQCGELLSE-NLINGRP--ICLIKLHQPLQVAHWQI-DIIELPYPKN-KRYPH-EG 110 (185)
T ss_pred ccccceeEEEeCcHHHHHHHHHHHHHHHHHhhh-hhcCCce--EEEEEcCCcceecceEE-EEEEccCCcC-CCCCC-cC
Confidence 346899999999999888876554422 1111 1111111 1111111 1111 1456655433 33333 36
Q ss_pred eeEEEEEEC-CHHHHHHHH
Q 024414 170 FGHFGIAVD-DVAKTVELI 187 (268)
Q Consensus 170 ~~hi~f~V~-Did~~~~~L 187 (268)
-.||-|..+ +.+++..+.
T Consensus 111 WEHIEiVlP~~peel~~~~ 129 (185)
T COG3102 111 WEHIEIVLPGDPEELNARA 129 (185)
T ss_pred ceeEEEEcCCChHHHHHHH
Confidence 779999998 455554443
No 202
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=25.84 E-value=3.4e+02 Score=22.15 Aligned_cols=54 Identities=20% Similarity=0.223 Sum_probs=36.3
Q ss_pred CeeEEEEEECCHHHHHHHHHHcCCeEe--eCCc-----------cc-C-----CCCeEEEEEECCCCCEEEEE
Q 024414 169 GFGHFGIAVDDVAKTVELIKAKGGKVT--REPG-----------PV-K-----GGNTVIAFIEDPDGYKFELL 222 (268)
Q Consensus 169 g~~hi~f~V~Did~~~~~L~~~G~~i~--~~p~-----------~~-~-----~G~~~~~~~~DPdG~~iEl~ 222 (268)
|...+++.+++++...+...+.|.++. ..+. +. . .+-.|..|+.|+||.+...+
T Consensus 64 ~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~ 136 (157)
T COG1225 64 GAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVW 136 (157)
T ss_pred CCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEe
Confidence 666788888888877777777776551 1111 00 0 13457889999999888887
No 203
>PF02208 Sorb: Sorbin homologous domain; InterPro: IPR003127 Sorbin is an active peptide present in the digestive tract, where it has pro-absorptive and anti-secretory effects in different parts of the intestine, including the ability to decrease VIP (vasoactive intestinal peptide) and cholera toxin-induced secretion. It is expressed in some intestinal and pancreatic endocrine tumours in humans []. Sorbin-homology domains are found in adaptor proteins such as vinexin, CAP/ponsin and argBP2, which regulate various cellular functions, including cell adhesion, cytoskeletal organisation, and growth factor signalling []. In addition to the sorbin domain, these proteins contain three SH3 (src homology 3) domains. The sorbin homology domain mediates the interaction of vinexin and CAP with flotillin, which is crucial for the localisation of SH3-binding proteins to the lipid raft, a region of the plasma membrane rich in cholesterol and sphingolipids that acts to concentrate certain signalling molecules. The sorbin homology domain of adaptor proteins may mediate interactions with the lipid raft that are crucial to intracellular communication [].
Probab=24.57 E-value=18 Score=22.97 Aligned_cols=21 Identities=14% Similarity=0.273 Sum_probs=16.3
Q ss_pred eEEEEEeCCHHHHHHHHHhhc
Q 024414 102 LHVVYRVGDLDRTIKFYTECL 122 (268)
Q Consensus 102 ~HV~l~V~Dle~a~~FY~~vL 122 (268)
+..++.++++++..+||...|
T Consensus 13 De~giP~~~vd~~kDWYktMF 33 (47)
T PF02208_consen 13 DESGIPLSNVDRPKDWYKTMF 33 (47)
T ss_pred ccCCCccccccchhHHHHHHH
Confidence 345566688899999999865
No 204
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=24.47 E-value=1.5e+02 Score=19.92 Aligned_cols=27 Identities=30% Similarity=0.235 Sum_probs=20.9
Q ss_pred CCeeEEEEEECC---HHHHHHHHHHcCCeE
Q 024414 168 TGFGHFGIAVDD---VAKTVELIKAKGGKV 194 (268)
Q Consensus 168 ~g~~hi~f~V~D---id~~~~~L~~~G~~i 194 (268)
.+..++.+++.+ ++++.+.|+++|+.+
T Consensus 37 ~~~v~v~ie~~~~~~~~~i~~~L~~~G~~~ 66 (68)
T cd04885 37 EARVLVGIQVPDREDLAELKERLEALGYPY 66 (68)
T ss_pred ceEEEEEEEeCCHHHHHHHHHHHHHcCCCc
Confidence 344567888865 788999999999875
No 205
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=23.92 E-value=1.4e+02 Score=19.80 Aligned_cols=23 Identities=30% Similarity=0.317 Sum_probs=19.2
Q ss_pred EEEEEECCHHHHHHHHHHcCCeE
Q 024414 172 HFGIAVDDVAKTVELIKAKGGKV 194 (268)
Q Consensus 172 hi~f~V~Did~~~~~L~~~G~~i 194 (268)
.+-+.++|.+++.+.|+++|+++
T Consensus 42 ~~rl~~~~~~~~~~~L~~~G~~v 64 (66)
T cd04908 42 ILRLIVSDPDKAKEALKEAGFAV 64 (66)
T ss_pred EEEEEECCHHHHHHHHHHCCCEE
Confidence 45666788889999999999876
No 206
>COG1437 CyaB Adenylate cyclase, class 2 (thermophilic) [Nucleotide transport and metabolism]
Probab=23.54 E-value=4.4e+02 Score=22.01 Aligned_cols=84 Identities=17% Similarity=0.282 Sum_probs=51.2
Q ss_pred EEEEECCHHHHHHHHHHcCCeEeeCCccc------CCC----CeEEEEEECCCCCEEEEEEeCCC----CCCceeEEEEc
Q 024414 173 FGIAVDDVAKTVELIKAKGGKVTREPGPV------KGG----NTVIAFIEDPDGYKFELLERGPT----PEPLCQVMLRV 238 (268)
Q Consensus 173 i~f~V~Did~~~~~L~~~G~~i~~~p~~~------~~G----~~~~~~~~DPdG~~iEl~e~~~~----~~~l~~v~L~v 238 (268)
+=+.+.|.+.+.++|.+.|........+. +.+ ......++.-+|+...+.-.+|. ......+.+.+
T Consensus 6 vK~~v~d~e~i~~~l~~~~~~~~~~e~q~DiYf~~p~rdf~~tdealRiR~~~~~~~~lTYKgp~ld~~~k~r~E~E~~v 85 (178)
T COG1437 6 VKFRVRDLEEIRERLASLGAKFIKEEEQEDIYFDHPCRDFADTDEALRIRRINGGEVFLTYKGPKLDRESKTREEIEIEV 85 (178)
T ss_pred EEEEecCHHHHHHHHHhccccccceeeeeeeeeecCCcchhcCcceeEEEEecCCcEEEEEecccccccccceeeEEEEe
Confidence 44566789999999999987764332221 111 01234444223333333333221 24467888999
Q ss_pred CCHHHHHHHHHHhcCCeEe
Q 024414 239 GDLDRSINFYEQAFGMELL 257 (268)
Q Consensus 239 ~d~~~s~~FY~~vlG~~~~ 257 (268)
.|.+.+.+-+.. |||...
T Consensus 86 ~D~~~~~~il~~-LGF~~~ 103 (178)
T COG1437 86 SDVEKALEILKR-LGFKEV 103 (178)
T ss_pred CCHHHHHHHHHH-cCCcee
Confidence 999999999966 999854
No 207
>PF15598 Imm37: Immunity protein 37
Probab=22.37 E-value=4.1e+02 Score=21.20 Aligned_cols=79 Identities=19% Similarity=0.245 Sum_probs=48.5
Q ss_pred HHHHHHHHcCCeEeeCCcc----cCCCCeEEEEEECCCCCEE-EEEEeCCCCCCceeEEEEcCCHHHHHHHHHHhcCCeE
Q 024414 182 KTVELIKAKGGKVTREPGP----VKGGNTVIAFIEDPDGYKF-ELLERGPTPEPLCQVMLRVGDLDRSINFYEQAFGMEL 256 (268)
Q Consensus 182 ~~~~~L~~~G~~i~~~p~~----~~~G~~~~~~~~DPdG~~i-El~e~~~~~~~l~~v~L~v~d~~~s~~FY~~vlG~~~ 256 (268)
++.+.+...|+.+...... ...|+....++.+.+|..+ +-.++..... ..+.+.+++-+.+|.--.+|-.+
T Consensus 3 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~eR~~~~~----~~l~~~~~~~~ek~lv~~~g~~~ 78 (159)
T PF15598_consen 3 RLLEWARLAGYVVSIDDDSHLIFWSDGGESRYHVWDEDGWYVVGRSERGSRRG----FTLATSSFDVAEKYLVMRFGDDA 78 (159)
T ss_pred HHHHHHHHCCceEEecCCCceEEecCCCcEEEEEEecCCeEEEEEEecCCccc----cEEEeCCHHHHHHHHHHHHHHHH
Confidence 4556677778777655444 2334445566666666543 3333333222 67789999999999888888666
Q ss_pred eeeecCCC
Q 024414 257 LRKRDNPE 264 (268)
Q Consensus 257 ~~~~~~p~ 264 (268)
......|.
T Consensus 79 R~~~~lp~ 86 (159)
T PF15598_consen 79 RSSLGLPS 86 (159)
T ss_pred HHhccCCc
Confidence 55554443
No 208
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=21.84 E-value=70 Score=18.56 Aligned_cols=18 Identities=39% Similarity=0.918 Sum_probs=14.2
Q ss_pred EcCCHHHHHHHHHHhcCC
Q 024414 237 RVGDLDRSINFYEQAFGM 254 (268)
Q Consensus 237 ~v~d~~~s~~FY~~vlG~ 254 (268)
..+|.++++++|++.|.+
T Consensus 11 ~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 11 QQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HCT-HHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 468999999999997754
No 209
>PRK06704 RNA polymerase factor sigma-70; Validated
Probab=20.02 E-value=79 Score=27.32 Aligned_cols=45 Identities=16% Similarity=0.203 Sum_probs=29.9
Q ss_pred EEEEECCHHHHHHHHHHcCCeEeeCCcccCCCCeEEEEEECCCCCEEEEE
Q 024414 173 FGIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 222 (268)
Q Consensus 173 i~f~V~Did~~~~~L~~~G~~i~~~p~~~~~G~~~~~~~~DPdG~~iEl~ 222 (268)
.+|...|.+.+.+.+ .|+.+...+. -|+...|++.||||+-.-++
T Consensus 182 ~~~~~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 226 (228)
T PRK06704 182 TSIREERPELLTKLL--PTIDFTKLPS---KQPVLLFNVKQPSSYSCMLC 226 (228)
T ss_pred HHHHhcCHHHHHHHh--ccceeeeccc---ccceEEEEeeCCCccchhhc
Confidence 355666777777755 5655544322 24678899999999987554
Done!