BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024415
(268 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P19711|POLG_BVDVN Genome polyprotein OS=Bovine viral diarrhea virus (isolate NADL) PE=1
SV=2
Length = 3988
Score = 35.4 bits (80), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 70 LLLEIRMPSIRKSSVSEGLTVEGILENWSKIKPVIMEDWSENRDALVDLFGKVRDEW 126
L++E R I+ L + ++ NW K +PV++ + E + L ++F KVR EW
Sbjct: 3547 LVVEKRPRVIQYPEAKTRLAITKVMYNWVKQQPVVIPGY-EGKTPLFNIFDKVRKEW 3602
>sp|Q96662|POLG_BVDVC Genome polyprotein OS=Bovine viral diarrhea virus (strain CP7) PE=1
SV=1
Length = 3907
Score = 34.3 bits (77), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 88 LTVEGILENWSKIKPVIMEDWSENRDALVDLFGKVRDEW 126
L + ++ NW K +PV++ + E + L ++F KVR EW
Sbjct: 3484 LAITKVMYNWVKQQPVVIPGY-EGKTPLFNIFNKVRKEW 3521
>sp|Q01499|POLG_BVDVS Genome polyprotein OS=Bovine viral diarrhea virus (strain SD-1) PE=3
SV=1
Length = 3898
Score = 34.3 bits (77), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 88 LTVEGILENWSKIKPVIMEDWSENRDALVDLFGKVRDEW 126
L + ++ NW K +PV++ + E + L ++F KVR EW
Sbjct: 3475 LAITKVMYNWVKQQPVVIPGY-EGKTPLFNIFNKVRKEW 3512
>sp|Q56339|FLHF_TREPA Flagellar biosynthesis protein FlhF OS=Treponema pallidum (strain
Nichols) GN=flhF PE=3 SV=1
Length = 437
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 36 FDGVDSVIEDWIVDQMHILRPVVETGYENLLLV 68
F+ V+S + WI++ +HI P + TG N++LV
Sbjct: 191 FEKVESTVLRWIIESVHIQVPPICTGTRNIVLV 223
>sp|A1WZH9|RIMN_HALHL tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Halorhodospira halophila (strain DSM 244 / SL1)
GN=rimN PE=3 SV=1
Length = 191
Score = 33.1 bits (74), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 164 RFADALLRELAGVTIPPDRIYGLGTGPK----VEVLKQLQKKPELQGMTLHFVEDR 215
R A A LR+ V P + ++GLG P+ V L L+ +PE QG+ L E R
Sbjct: 14 RHAAAELRQGGVVAYPTEAVWGLGCDPRNADAVARLLALKGRPERQGLILIAAESR 69
>sp|Q8RED8|LDH_FUSNN L-lactate dehydrogenase OS=Fusobacterium nucleatum subsp. nucleatum
(strain ATCC 25586 / CIP 101130 / JCM 8532 / LMG 13131)
GN=ldh PE=3 SV=1
Length = 318
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 144 IPDALKFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGTGPKVEVLKQL 198
+PD +K + I++ T +REL+G P +R+ G GTG LK++
Sbjct: 104 VPDVVKAGFNGIFVTITNPVDIVTYFVRELSG--FPKNRVIGTGTGLDSARLKRI 156
>sp|Q5NNZ0|TIG_ZYMMO Trigger factor OS=Zymomonas mobilis subsp. mobilis (strain ATCC
31821 / ZM4 / CP4) GN=tig PE=3 SV=1
Length = 492
Score = 32.3 bits (72), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 15/118 (12%)
Query: 50 QMHILRPVVETGYENLLLVRLLLEIRMPSIRKSSVSEGLTVEGILENWSKIKPVIMEDWS 109
+ IL V E +++L L RL +E I + ++ E+ + +
Sbjct: 109 KFEILPEVPEISFDDLKLERLTVEADNAVIDEK-------IKEFAEHQKSFDDSKKDHKA 161
Query: 110 ENRD-ALVDLFGKVRDEWMD----KDLTTWIGANRFYPGIPDAL---KFASSRIYIVT 159
EN D +VD GKV E + D++ +GA +F PG + L K SR+ VT
Sbjct: 162 ENGDLVVVDFVGKVDGEPFEGGTGSDMSVELGAGQFIPGFEEQLVGAKQGESRVLKVT 219
>sp|Q7VIN8|TIG_HELHP Trigger factor OS=Helicobacter hepaticus (strain ATCC 51449 / 3B1)
GN=tig PE=3 SV=1
Length = 442
Score = 31.2 bits (69), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 71/161 (44%), Gaps = 20/161 (12%)
Query: 73 EIRMPSIRKSSVSEGLTVEGILENWSKIKPVIMEDWSENRD-ALVDLFGKVRDEWMD--- 128
E+++ +I K+ + E L E I +N + + + E + D A +D G V + +
Sbjct: 128 EVKLKTISKNLIDERL--EEIAKNRAPLNEITQERTLQKDDTAQIDFEGFVDGKAFEGGK 185
Query: 129 -KDLTTWIGANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIY 184
++ IG+N+F PG DAL K R VT + A L + A + +I
Sbjct: 186 GENFNLAIGSNQFIPGFEDALIGMKNGEKRTIKVTFPEQYQAKHLAGKEASFDVTLHKI- 244
Query: 185 GLGTGPKVEVLKQLQKKPELQGMTLHFVEDRLATLKNVIKE 225
+ K+L K + ++ E L +LK++IKE
Sbjct: 245 ---------LQKELPKIDDEFAKSIAGEESNLQSLKDMIKE 276
>sp|Q7VGY5|CLPX_HELHP ATP-dependent Clp protease ATP-binding subunit ClpX OS=Helicobacter
hepaticus (strain ATCC 51449 / 3B1) GN=clpX PE=3 SV=1
Length = 426
Score = 31.2 bits (69), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 188 TGPKVEVLKQLQKKPELQGMTLHFVEDRLATL 219
T PK ++KQ QK E+ G TLHF +D + ++
Sbjct: 332 TKPKNALIKQYQKIFEIDGATLHFEKDAIESI 363
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.138 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,523,157
Number of Sequences: 539616
Number of extensions: 4107279
Number of successful extensions: 11073
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 11067
Number of HSP's gapped (non-prelim): 22
length of query: 268
length of database: 191,569,459
effective HSP length: 115
effective length of query: 153
effective length of database: 129,513,619
effective search space: 19815583707
effective search space used: 19815583707
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)