Query 024415
Match_columns 268
No_of_seqs 133 out of 1705
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 04:26:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024415.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024415hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0546 Gph Predicted phosphat 100.0 3.6E-31 7.9E-36 219.1 13.8 124 137-267 87-217 (220)
2 PRK13226 phosphoglycolate phos 100.0 3.1E-30 6.7E-35 214.9 13.1 125 136-267 92-224 (229)
3 PRK13288 pyrophosphatase PpaX; 100.0 6.6E-30 1.4E-34 210.8 13.1 125 136-267 79-210 (214)
4 TIGR01422 phosphonatase phosph 100.0 4E-29 8.6E-34 211.3 17.1 126 135-267 95-252 (253)
5 PLN02770 haloacid dehalogenase 100.0 7.6E-29 1.6E-33 208.8 14.3 121 136-264 105-232 (248)
6 PRK13478 phosphonoacetaldehyde 100.0 2.2E-28 4.8E-33 208.3 17.3 126 135-267 97-254 (267)
7 TIGR01449 PGP_bact 2-phosphogl 100.0 6.7E-29 1.5E-33 204.5 12.8 125 136-267 82-213 (213)
8 TIGR03351 PhnX-like phosphonat 100.0 1.9E-28 4.1E-33 202.9 15.4 125 137-268 85-220 (220)
9 PRK13225 phosphoglycolate phos 100.0 4.9E-28 1.1E-32 205.8 13.9 126 135-267 138-267 (273)
10 PRK13223 phosphoglycolate phos 100.0 4.9E-28 1.1E-32 206.4 12.9 124 137-267 99-229 (272)
11 TIGR01454 AHBA_synth_RP 3-amin 100.0 5.1E-28 1.1E-32 198.2 11.7 126 136-268 72-204 (205)
12 PLN03243 haloacid dehalogenase 100.0 4.3E-27 9.3E-32 198.8 17.5 120 137-266 107-233 (260)
13 PRK11587 putative phosphatase; 99.9 1.6E-27 3.4E-32 197.2 12.0 118 136-264 80-204 (218)
14 PRK13222 phosphoglycolate phos 99.9 4.6E-27 1E-31 195.2 13.8 125 136-267 90-221 (226)
15 PLN02575 haloacid dehalogenase 99.9 2.2E-26 4.8E-31 201.5 17.8 119 136-264 213-338 (381)
16 PRK10826 2-deoxyglucose-6-phos 99.9 5.6E-27 1.2E-31 194.4 12.2 122 136-265 89-217 (222)
17 TIGR02253 CTE7 HAD superfamily 99.9 1.8E-25 4E-30 185.0 19.1 122 136-263 91-220 (221)
18 PRK09449 dUMP phosphatase; Pro 99.9 5.7E-26 1.2E-30 188.6 13.7 124 136-268 92-223 (224)
19 PRK06698 bifunctional 5'-methy 99.9 5E-26 1.1E-30 207.6 12.4 121 136-267 327-453 (459)
20 PRK10748 flavin mononucleotide 99.9 1.1E-24 2.4E-29 182.5 19.3 153 100-267 79-238 (238)
21 TIGR02254 YjjG/YfnB HAD superf 99.9 4.4E-25 9.5E-30 183.0 14.2 121 137-267 95-224 (224)
22 PRK10563 6-phosphogluconate ph 99.9 9.5E-26 2.1E-30 186.9 9.4 123 136-267 85-212 (221)
23 PLN02940 riboflavin kinase 99.9 2.3E-25 5.1E-30 198.0 11.4 120 136-264 90-217 (382)
24 COG0637 Predicted phosphatase/ 99.9 3.8E-25 8.2E-30 182.9 8.4 126 135-267 82-216 (221)
25 PRK14988 GMP/IMP nucleotidase; 99.9 4.7E-24 1E-28 176.9 14.9 102 136-242 90-199 (224)
26 TIGR01428 HAD_type_II 2-haloal 99.9 2.3E-23 5.1E-28 169.7 16.3 98 137-239 90-194 (198)
27 PLN02779 haloacid dehalogenase 99.9 4.2E-23 9E-28 177.1 17.1 117 138-264 143-269 (286)
28 PHA02597 30.2 hypothetical pro 99.9 4.1E-24 8.8E-29 174.0 10.3 117 135-265 70-196 (197)
29 TIGR02009 PGMB-YQAB-SF beta-ph 99.9 9.7E-24 2.1E-28 169.9 10.3 93 137-236 86-185 (185)
30 COG1011 Predicted hydrolase (H 99.9 6.1E-23 1.3E-27 170.7 15.4 123 137-268 97-227 (229)
31 TIGR01990 bPGM beta-phosphoglu 99.9 7.6E-24 1.6E-28 170.5 9.1 94 137-237 85-185 (185)
32 PRK10725 fructose-1-P/6-phosph 99.9 9.4E-24 2E-28 170.5 9.4 96 136-237 85-186 (188)
33 TIGR02252 DREG-2 REG-2-like, H 99.9 2.8E-23 6E-28 169.8 10.1 92 138-235 104-203 (203)
34 PLN02919 haloacid dehalogenase 99.9 7.4E-23 1.6E-27 201.6 13.2 117 139-263 161-285 (1057)
35 TIGR01993 Pyr-5-nucltdase pyri 99.9 1.5E-22 3.2E-27 163.1 12.0 95 137-236 82-184 (184)
36 PF13419 HAD_2: Haloacid dehal 99.9 1.2E-21 2.6E-26 155.4 13.0 97 135-236 73-176 (176)
37 TIGR02247 HAD-1A3-hyp Epoxide 99.9 7.7E-23 1.7E-27 168.3 4.6 107 136-247 91-206 (211)
38 PLN02811 hydrolase 99.9 4.4E-22 9.6E-27 164.8 8.0 120 137-264 76-207 (220)
39 PRK09456 ?-D-glucose-1-phospha 99.9 1.2E-20 2.7E-25 153.8 14.0 105 139-247 84-195 (199)
40 TIGR01509 HAD-SF-IA-v3 haloaci 99.9 1.5E-20 3.4E-25 150.7 13.9 93 138-236 84-183 (183)
41 PLN02954 phosphoserine phospha 99.8 2.1E-19 4.5E-24 149.1 19.0 121 138-268 83-224 (224)
42 TIGR00338 serB phosphoserine p 99.8 1.4E-19 3E-24 149.6 16.3 118 137-267 83-219 (219)
43 PRK08942 D,D-heptose 1,7-bisph 99.8 7.3E-20 1.6E-24 147.0 13.5 119 139-267 29-176 (181)
44 TIGR01548 HAD-SF-IA-hyp1 haloa 99.8 8.8E-21 1.9E-25 154.4 7.1 86 139-229 106-197 (197)
45 TIGR00213 GmhB_yaeD D,D-heptos 99.8 9.8E-20 2.1E-24 145.6 11.8 117 139-265 26-176 (176)
46 TIGR01493 HAD-SF-IA-v2 Haloaci 99.8 1.8E-20 4E-25 149.6 4.3 84 137-229 88-175 (175)
47 TIGR01549 HAD-SF-IA-v1 haloaci 99.8 5.8E-20 1.3E-24 143.6 6.8 87 137-230 62-154 (154)
48 TIGR01685 MDP-1 magnesium-depe 99.8 2.4E-19 5.3E-24 141.7 9.0 103 136-243 42-163 (174)
49 TIGR01691 enolase-ppase 2,3-di 99.8 1.9E-18 4E-23 142.2 13.4 103 135-242 91-201 (220)
50 TIGR01491 HAD-SF-IB-PSPlk HAD- 99.8 9E-18 2E-22 136.8 15.1 94 137-235 78-188 (201)
51 KOG3085 Predicted hydrolase (H 99.8 6.1E-19 1.3E-23 144.3 7.1 104 137-246 111-222 (237)
52 PRK09552 mtnX 2-hydroxy-3-keto 99.8 8.2E-18 1.8E-22 139.2 12.2 121 136-267 71-212 (219)
53 TIGR01672 AphA HAD superfamily 99.8 6.7E-18 1.5E-22 140.0 11.1 98 137-244 112-218 (237)
54 TIGR01656 Histidinol-ppas hist 99.8 2.1E-18 4.6E-23 133.8 7.6 95 139-239 27-147 (147)
55 TIGR01662 HAD-SF-IIIA HAD-supe 99.7 7.2E-18 1.6E-22 128.4 9.9 91 140-237 26-131 (132)
56 PRK06769 hypothetical protein; 99.7 4.8E-18 1E-22 135.3 7.7 122 139-267 28-171 (173)
57 PRK13582 thrH phosphoserine ph 99.7 7E-17 1.5E-21 132.1 14.2 115 136-267 65-195 (205)
58 TIGR01261 hisB_Nterm histidino 99.7 2.3E-17 4.9E-22 129.6 9.4 99 139-244 29-154 (161)
59 KOG2914 Predicted haloacid-hal 99.7 7.3E-17 1.6E-21 131.7 7.8 120 135-263 88-218 (222)
60 TIGR01489 DKMTPPase-SF 2,3-dik 99.7 9.6E-16 2.1E-20 123.4 14.3 87 138-232 71-184 (188)
61 PRK11133 serB phosphoserine ph 99.7 1.3E-15 2.8E-20 132.2 15.6 119 136-267 178-315 (322)
62 TIGR01664 DNA-3'-Pase DNA 3'-p 99.7 1.7E-16 3.8E-21 125.3 7.9 89 140-235 43-160 (166)
63 TIGR01458 HAD-SF-IIA-hyp3 HAD- 99.6 4.8E-17 1E-21 137.6 2.8 122 141-267 122-254 (257)
64 PRK11009 aphA acid phosphatase 99.6 1.1E-15 2.4E-20 126.7 9.5 98 135-244 110-218 (237)
65 TIGR01452 PGP_euk phosphoglyco 99.6 2.8E-16 6.1E-21 134.6 4.6 118 140-263 144-279 (279)
66 TIGR03333 salvage_mtnX 2-hydro 99.6 1.1E-14 2.5E-19 119.9 13.6 117 137-267 68-208 (214)
67 TIGR01681 HAD-SF-IIIC HAD-supe 99.6 9.1E-16 2E-20 116.1 6.3 81 140-221 30-123 (128)
68 PRK05446 imidazole glycerol-ph 99.6 8E-15 1.7E-19 128.1 12.4 104 138-248 29-159 (354)
69 KOG3109 Haloacid dehalogenase- 99.6 1.6E-14 3.5E-19 114.7 12.5 100 136-240 97-208 (244)
70 TIGR01490 HAD-SF-IB-hyp1 HAD-s 99.6 1.2E-13 2.6E-18 112.6 16.1 113 108-234 65-195 (202)
71 TIGR01670 YrbI-phosphatas 3-de 99.6 4.9E-15 1.1E-19 115.7 5.8 99 146-261 38-136 (154)
72 cd01427 HAD_like Haloacid deha 99.6 2.3E-14 5E-19 108.5 9.3 93 139-236 24-139 (139)
73 PHA02530 pseT polynucleotide k 99.5 1.2E-14 2.7E-19 125.8 8.2 96 139-239 187-298 (300)
74 TIGR01488 HAD-SF-IB Haloacid D 99.5 2.6E-13 5.7E-18 108.2 14.2 89 136-229 70-177 (177)
75 PRK09484 3-deoxy-D-manno-octul 99.5 3.5E-14 7.5E-19 114.1 8.9 103 148-267 60-168 (183)
76 TIGR02726 phenyl_P_delta pheny 99.5 1.3E-14 2.9E-19 114.5 6.2 96 146-258 44-139 (169)
77 TIGR02137 HSK-PSP phosphoserin 99.5 3.3E-13 7.1E-18 110.1 13.5 115 136-267 65-195 (203)
78 TIGR01668 YqeG_hyp_ppase HAD s 99.5 4.1E-14 8.8E-19 112.4 7.5 100 138-247 42-146 (170)
79 TIGR01457 HAD-SF-IIA-hyp2 HAD- 99.5 2E-13 4.2E-18 115.1 11.9 71 189-263 178-249 (249)
80 COG0560 SerB Phosphoserine pho 99.5 7E-13 1.5E-17 108.7 14.8 92 138-234 76-184 (212)
81 PF00702 Hydrolase: haloacid d 99.5 2.3E-13 5.1E-18 111.6 10.3 85 138-230 126-215 (215)
82 PRK10444 UMP phosphatase; Prov 99.5 3E-14 6.6E-19 119.7 4.6 72 189-264 174-246 (248)
83 PF06888 Put_Phosphatase: Puta 99.4 1.6E-11 3.4E-16 101.4 16.4 109 135-248 67-208 (234)
84 PF13242 Hydrolase_like: HAD-h 99.4 3E-13 6.4E-18 92.5 5.0 72 188-263 3-75 (75)
85 COG0647 NagD Predicted sugar p 99.4 1.9E-12 4.1E-17 108.8 10.5 74 190-267 191-265 (269)
86 KOG1615 Phosphoserine phosphat 99.3 1.5E-11 3.3E-16 96.1 10.9 84 135-221 84-188 (227)
87 PRK11590 hypothetical protein; 99.3 3.3E-11 7.1E-16 99.1 13.5 90 138-237 94-202 (211)
88 COG2179 Predicted hydrolase of 99.3 2.9E-11 6.2E-16 92.6 10.3 80 149-238 59-139 (175)
89 TIGR01686 FkbH FkbH-like domai 99.3 4.8E-12 1E-16 110.5 6.9 87 140-231 32-124 (320)
90 PLN02645 phosphoglycolate phos 99.3 1.5E-12 3.3E-17 113.2 3.4 114 150-268 184-308 (311)
91 TIGR01544 HAD-SF-IE haloacid d 99.3 3.4E-10 7.4E-15 95.6 17.2 118 93-229 89-230 (277)
92 PRK08238 hypothetical protein; 99.3 7.2E-11 1.6E-15 107.7 13.7 91 137-241 70-169 (479)
93 TIGR01663 PNK-3'Pase polynucle 99.3 1.6E-11 3.4E-16 112.6 9.2 85 140-231 198-305 (526)
94 smart00577 CPDc catalytic doma 99.2 1E-11 2.2E-16 96.4 5.3 91 137-233 43-138 (148)
95 TIGR01545 YfhB_g-proteo haloac 99.2 1.8E-09 4E-14 88.5 16.8 111 109-237 72-201 (210)
96 PF12689 Acid_PPase: Acid Phos 99.2 7.6E-11 1.6E-15 92.6 6.8 106 136-248 42-161 (169)
97 COG4229 Predicted enolase-phos 99.1 2.6E-10 5.7E-15 88.3 7.6 119 116-239 80-206 (229)
98 TIGR02244 HAD-IG-Ncltidse HAD 99.1 3.5E-10 7.7E-15 98.4 8.3 100 135-238 180-324 (343)
99 COG1778 Low specificity phosph 99.1 8.6E-11 1.9E-15 88.9 3.5 79 146-234 45-123 (170)
100 PRK10530 pyridoxal phosphate ( 99.1 3.2E-09 6.9E-14 90.5 12.9 109 140-260 138-258 (272)
101 COG0241 HisB Histidinol phosph 99.0 1.2E-09 2.6E-14 86.4 8.5 117 139-265 31-174 (181)
102 TIGR01533 lipo_e_P4 5'-nucleot 99.0 5.2E-09 1.1E-13 88.3 11.9 81 136-221 115-203 (266)
103 KOG3120 Predicted haloacid deh 99.0 4.2E-09 9.1E-14 84.2 10.5 106 135-244 80-217 (256)
104 PF12710 HAD: haloacid dehalog 99.0 9.2E-09 2E-13 82.9 12.5 76 142-221 92-190 (192)
105 TIGR01525 ATPase-IB_hvy heavy 99.0 2.4E-09 5.3E-14 100.3 9.5 111 138-267 383-499 (556)
106 TIGR01512 ATPase-IB2_Cd heavy 98.9 3.1E-09 6.8E-14 99.1 8.6 113 137-267 360-478 (536)
107 COG4359 Uncharacterized conser 98.9 2.7E-08 5.8E-13 77.4 10.0 114 135-265 69-209 (220)
108 TIGR01511 ATPase-IB1_Cu copper 98.8 2.1E-08 4.5E-13 94.0 11.1 109 138-267 404-518 (562)
109 TIGR01459 HAD-SF-IIA-hyp4 HAD- 98.8 5.1E-10 1.1E-14 94.0 0.1 92 141-238 140-242 (242)
110 PF08645 PNK3P: Polynucleotide 98.8 5.5E-09 1.2E-13 81.9 5.2 87 141-234 31-153 (159)
111 PRK00192 mannosyl-3-phosphogly 98.8 5.5E-09 1.2E-13 89.3 5.6 83 149-239 145-235 (273)
112 PRK01158 phosphoglycolate phos 98.8 6.3E-08 1.4E-12 80.4 10.0 92 154-259 117-215 (230)
113 PF09419 PGP_phosphatase: Mito 98.7 6.3E-08 1.4E-12 75.9 7.7 78 154-240 79-167 (168)
114 TIGR01684 viral_ppase viral ph 98.7 6E-08 1.3E-12 82.0 7.5 39 149-188 159-197 (301)
115 PRK10671 copA copper exporting 98.6 7.8E-08 1.7E-12 94.3 7.3 113 138-267 649-764 (834)
116 PF06941 NT5C: 5' nucleotidase 98.6 4.1E-07 9E-12 73.5 9.6 105 136-266 70-184 (191)
117 PTZ00445 p36-lilke protein; Pr 98.5 1.3E-07 2.9E-12 75.9 5.6 94 140-238 76-206 (219)
118 TIGR01459 HAD-SF-IIA-hyp4 HAD- 98.5 1.8E-07 3.9E-12 78.5 6.6 83 137-221 22-110 (242)
119 PHA03398 viral phosphatase sup 98.5 2.9E-07 6.3E-12 77.9 7.4 39 149-188 161-199 (303)
120 PLN02645 phosphoglycolate phos 98.5 5E-07 1.1E-11 78.7 9.2 86 140-235 45-136 (311)
121 TIGR02251 HIF-SF_euk Dullard-l 98.5 1.2E-07 2.6E-12 74.6 4.6 95 137-237 40-139 (162)
122 TIGR01522 ATPase-IIA2_Ca golgi 98.5 1.1E-06 2.3E-11 86.8 10.4 114 139-267 528-670 (884)
123 KOG2882 p-Nitrophenyl phosphat 98.4 3.4E-07 7.4E-12 76.9 5.6 75 189-267 224-303 (306)
124 TIGR01456 CECR5 HAD-superfamil 98.4 4.1E-07 8.9E-12 79.5 5.0 74 189-267 233-320 (321)
125 COG4996 Predicted phosphatase 98.4 1.4E-06 3E-11 64.2 6.4 85 136-221 38-131 (164)
126 PRK11033 zntA zinc/cadmium/mer 98.3 4.7E-06 1E-10 80.7 9.9 109 139-267 568-680 (741)
127 KOG3040 Predicted sugar phosph 98.2 8.8E-07 1.9E-11 70.5 3.3 75 189-267 181-256 (262)
128 TIGR01675 plant-AP plant acid 98.2 1.5E-05 3.2E-10 65.8 9.6 81 135-221 116-211 (229)
129 COG0561 Cof Predicted hydrolas 98.2 6.3E-06 1.4E-10 70.0 7.7 51 190-248 189-239 (264)
130 PRK15126 thiamin pyrimidine py 98.2 1.5E-05 3.2E-10 68.1 9.9 52 190-249 188-239 (272)
131 COG3700 AphA Acid phosphatase 98.1 5.4E-06 1.2E-10 64.4 5.7 84 149-242 127-216 (237)
132 COG4087 Soluble P-type ATPase 98.1 1.1E-05 2.4E-10 59.5 7.0 115 138-268 29-147 (152)
133 TIGR01460 HAD-SF-IIA Haloacid 98.1 2.8E-06 6.1E-11 71.0 3.7 47 189-239 188-236 (236)
134 PLN02887 hydrolase family prot 98.1 5E-05 1.1E-09 71.2 11.7 59 190-259 507-565 (580)
135 PF03767 Acid_phosphat_B: HAD 98.0 7.2E-06 1.6E-10 68.1 5.4 83 139-230 115-212 (229)
136 PF05761 5_nucleotid: 5' nucle 98.0 1.5E-05 3.3E-10 72.1 7.3 97 139-239 183-326 (448)
137 PF11019 DUF2608: Protein of u 98.0 0.00014 3.1E-09 61.2 12.5 99 140-239 82-211 (252)
138 TIGR01116 ATPase-IIA1_Ca sarco 98.0 3.6E-05 7.8E-10 76.4 10.2 113 139-267 537-682 (917)
139 TIGR01680 Veg_Stor_Prot vegeta 97.9 0.00015 3.2E-09 61.1 10.5 81 135-221 141-237 (275)
140 KOG2630 Enolase-phosphatase E- 97.9 9.9E-05 2.1E-09 59.8 8.7 144 113-265 97-250 (254)
141 smart00775 LNS2 LNS2 domain. T 97.8 0.00017 3.6E-09 56.4 9.4 88 141-232 29-141 (157)
142 COG5663 Uncharacterized conser 97.8 5.4E-05 1.2E-09 58.3 5.4 90 142-244 75-168 (194)
143 PLN02177 glycerol-3-phosphate 97.7 0.002 4.3E-08 59.5 15.3 115 107-237 87-214 (497)
144 TIGR02463 MPGP_rel mannosyl-3- 97.6 0.00015 3.3E-09 59.8 6.5 71 158-234 145-219 (221)
145 TIGR01487 SPP-like sucrose-pho 97.6 0.00017 3.7E-09 59.3 6.3 95 153-259 108-205 (215)
146 PRK12702 mannosyl-3-phosphogly 97.6 0.00055 1.2E-08 58.4 9.3 81 149-235 144-251 (302)
147 COG2503 Predicted secreted aci 97.5 0.00055 1.2E-08 56.1 8.5 81 136-221 119-208 (274)
148 TIGR02250 FCP1_euk FCP1-like p 97.5 0.00025 5.5E-09 55.3 5.7 78 136-217 55-138 (156)
149 PRK01122 potassium-transportin 97.5 0.00093 2E-08 63.9 10.4 108 139-266 445-558 (679)
150 TIGR01497 kdpB K+-transporting 97.4 0.00057 1.2E-08 65.2 8.6 108 139-266 446-559 (675)
151 COG2217 ZntA Cation transport 97.4 0.00089 1.9E-08 64.2 9.7 109 139-267 537-651 (713)
152 PRK14010 potassium-transportin 97.4 0.0008 1.7E-08 64.2 9.4 108 139-266 441-554 (673)
153 TIGR01482 SPP-subfamily Sucros 97.4 0.00076 1.6E-08 55.6 8.1 86 154-248 109-199 (225)
154 TIGR01517 ATPase-IIB_Ca plasma 97.3 0.0015 3.2E-08 65.3 10.5 114 139-267 579-721 (941)
155 PRK10513 sugar phosphate phosp 97.3 0.0015 3.2E-08 55.5 8.4 28 149-177 33-60 (270)
156 TIGR01523 ATPase-IID_K-Na pota 97.3 0.0019 4.1E-08 65.1 10.3 114 139-267 646-798 (1053)
157 TIGR00685 T6PP trehalose-phosp 97.2 0.0005 1.1E-08 57.8 5.0 66 190-267 167-239 (244)
158 PRK10976 putative hydrolase; P 97.2 0.0011 2.3E-08 56.3 7.1 50 192-249 192-241 (266)
159 TIGR01524 ATPase-IIIB_Mg magne 97.1 0.0036 7.7E-08 62.0 10.3 110 139-265 515-652 (867)
160 PRK10517 magnesium-transportin 97.1 0.003 6.5E-08 62.7 9.8 109 139-265 550-687 (902)
161 PRK15122 magnesium-transportin 97.1 0.0026 5.6E-08 63.2 9.1 111 139-266 550-688 (903)
162 TIGR01647 ATPase-IIIA_H plasma 96.9 0.005 1.1E-07 60.1 9.3 89 139-237 442-560 (755)
163 TIGR01106 ATPase-IIC_X-K sodiu 96.9 0.0055 1.2E-07 61.6 9.7 113 139-266 568-735 (997)
164 TIGR01485 SPP_plant-cyano sucr 96.9 0.0022 4.9E-08 53.9 6.0 52 190-248 167-218 (249)
165 TIGR02471 sucr_syn_bact_C sucr 96.8 0.0027 5.9E-08 52.9 6.0 57 190-254 159-215 (236)
166 TIGR01487 SPP-like sucrose-pho 96.7 0.0024 5.2E-08 52.4 4.9 28 149-177 31-58 (215)
167 TIGR01456 CECR5 HAD-superfamil 96.7 0.0034 7.4E-08 54.9 5.9 69 152-234 36-108 (321)
168 KOG0207 Cation transport ATPas 96.7 0.011 2.4E-07 57.1 9.1 74 139-221 723-800 (951)
169 TIGR02461 osmo_MPG_phos mannos 96.5 0.0067 1.5E-07 50.3 5.9 29 149-178 28-56 (225)
170 TIGR01652 ATPase-Plipid phosph 96.4 0.012 2.7E-07 59.6 8.5 115 139-267 631-819 (1057)
171 PRK10513 sugar phosphate phosp 96.4 0.0049 1.1E-07 52.4 4.9 59 190-259 196-254 (270)
172 PF06189 5-nucleotidase: 5'-nu 96.4 0.025 5.4E-07 47.3 8.4 78 150-240 184-261 (264)
173 COG4030 Uncharacterized protei 96.3 0.11 2.3E-06 42.6 11.6 39 137-176 81-121 (315)
174 TIGR01460 HAD-SF-IIA Haloacid 96.3 0.01 2.2E-07 49.6 6.0 39 149-187 27-68 (236)
175 PF05152 DUF705: Protein of un 96.2 0.018 3.9E-07 48.6 7.1 40 148-188 154-193 (297)
176 TIGR01484 HAD-SF-IIB HAD-super 96.1 0.0034 7.4E-08 50.9 2.3 40 190-233 163-202 (204)
177 KOG2470 Similar to IMP-GMP spe 96.1 0.0053 1.2E-07 53.0 3.3 93 142-237 243-375 (510)
178 TIGR02463 MPGP_rel mannosyl-3- 96.1 0.0074 1.6E-07 49.7 4.2 28 149-177 29-56 (221)
179 TIGR00099 Cof-subfamily Cof su 96.1 0.0074 1.6E-07 50.9 4.2 59 190-259 188-246 (256)
180 COG0474 MgtA Cation transport 96.1 0.02 4.3E-07 57.1 7.7 87 138-233 546-661 (917)
181 TIGR01482 SPP-subfamily Sucros 96.0 0.012 2.5E-07 48.5 5.0 27 149-176 28-54 (225)
182 PRK10976 putative hydrolase; P 96.0 0.0099 2.1E-07 50.4 4.5 17 1-17 1-17 (266)
183 PLN02499 glycerol-3-phosphate 96.0 0.053 1.2E-06 49.7 9.3 62 106-177 72-133 (498)
184 TIGR00099 Cof-subfamily Cof su 96.0 0.014 3E-07 49.2 5.3 28 149-177 29-56 (256)
185 PRK03669 mannosyl-3-phosphogly 95.7 0.037 8E-07 47.1 7.1 66 191-261 188-256 (271)
186 PF13344 Hydrolase_6: Haloacid 95.7 0.019 4.2E-07 41.2 4.5 70 139-215 14-89 (101)
187 COG3882 FkbH Predicted enzyme 95.7 0.065 1.4E-06 48.5 8.5 69 148-222 267-343 (574)
188 KOG0202 Ca2+ transporting ATPa 95.7 0.077 1.7E-06 51.2 9.4 98 139-248 584-712 (972)
189 PRK03669 mannosyl-3-phosphogly 95.7 0.011 2.3E-07 50.4 3.6 46 165-219 191-238 (271)
190 PF08282 Hydrolase_3: haloacid 95.7 0.06 1.3E-06 44.5 8.0 60 192-262 188-247 (254)
191 PF08282 Hydrolase_3: haloacid 95.7 0.022 4.8E-07 47.1 5.3 13 5-17 1-13 (254)
192 TIGR01486 HAD-SF-IIB-MPGP mann 95.6 0.029 6.2E-07 47.4 5.8 43 191-238 177-221 (256)
193 PF08235 LNS2: LNS2 (Lipin/Ned 95.5 0.12 2.7E-06 40.1 8.4 88 140-232 28-141 (157)
194 PLN03190 aminophospholipid tra 95.5 0.053 1.1E-06 55.4 8.1 63 192-267 860-922 (1178)
195 PRK10187 trehalose-6-phosphate 95.4 0.03 6.5E-07 47.7 5.3 64 190-267 174-240 (266)
196 TIGR01657 P-ATPase-V P-type AT 95.2 0.07 1.5E-06 54.2 8.0 38 139-177 656-696 (1054)
197 PLN02382 probable sucrose-phos 95.2 0.04 8.6E-07 50.0 5.5 52 190-248 175-229 (413)
198 PF05822 UMPH-1: Pyrimidine 5' 95.1 0.33 7.1E-06 40.6 10.4 145 93-258 58-230 (246)
199 TIGR02471 sucr_syn_bact_C sucr 95.0 0.076 1.6E-06 44.2 6.5 35 149-185 27-61 (236)
200 TIGR01658 EYA-cons_domain eyes 94.9 0.41 8.9E-06 39.8 10.1 79 155-239 178-259 (274)
201 TIGR01486 HAD-SF-IIB-MPGP mann 94.9 0.022 4.7E-07 48.1 2.9 43 166-217 181-224 (256)
202 TIGR01494 ATPase_P-type ATPase 94.8 0.078 1.7E-06 49.3 6.6 77 139-231 347-427 (499)
203 KOG2961 Predicted hydrolase (H 94.8 0.15 3.2E-06 39.1 6.7 51 190-244 122-174 (190)
204 PTZ00174 phosphomannomutase; P 94.4 0.028 6.1E-07 47.2 2.5 40 190-237 188-231 (247)
205 TIGR01452 PGP_euk phosphoglyco 94.4 0.15 3.3E-06 43.6 7.0 70 140-215 19-94 (279)
206 TIGR02461 osmo_MPG_phos mannos 94.4 0.038 8.2E-07 45.8 3.1 41 190-234 181-223 (225)
207 PF05116 S6PP: Sucrose-6F-phos 94.4 0.056 1.2E-06 45.4 4.2 44 190-238 165-208 (247)
208 PRK14502 bifunctional mannosyl 94.2 0.12 2.7E-06 49.2 6.4 16 2-17 416-431 (694)
209 TIGR01689 EcbF-BcbF capsule bi 94.0 0.029 6.3E-07 42.0 1.6 15 3-17 2-16 (126)
210 PF03031 NIF: NLI interacting 93.9 0.031 6.6E-07 43.5 1.5 81 138-221 35-121 (159)
211 PRK10187 trehalose-6-phosphate 93.8 0.11 2.4E-06 44.2 4.8 14 4-17 16-29 (266)
212 TIGR01485 SPP_plant-cyano sucr 93.6 0.24 5.2E-06 41.5 6.5 28 149-177 34-61 (249)
213 PLN02423 phosphomannomutase 93.1 0.067 1.5E-06 44.9 2.4 40 190-238 189-232 (245)
214 COG3769 Predicted hydrolase (H 93.1 0.095 2E-06 42.7 3.1 86 149-242 145-239 (274)
215 KOG0206 P-type ATPase [General 93.0 2.2 4.7E-05 43.5 13.0 52 206-267 794-845 (1151)
216 CHL00162 thiG thiamin biosynth 92.9 0.69 1.5E-05 38.7 7.9 94 138-241 117-222 (267)
217 KOG3128 Uncharacterized conser 92.6 0.56 1.2E-05 39.1 7.0 81 140-221 139-243 (298)
218 COG5610 Predicted hydrolase (H 91.7 0.58 1.3E-05 42.3 6.5 97 135-236 93-201 (635)
219 cd04728 ThiG Thiazole synthase 90.9 1.3 2.9E-05 36.9 7.5 95 138-242 103-209 (248)
220 COG2216 KdpB High-affinity K+ 90.9 0.39 8.4E-06 44.2 4.6 89 140-243 448-541 (681)
221 COG4850 Uncharacterized conser 90.6 2.6 5.5E-05 36.6 9.0 81 138-221 195-293 (373)
222 TIGR01458 HAD-SF-IIA-hyp3 HAD- 90.2 0.34 7.3E-06 41.0 3.6 47 140-187 22-74 (257)
223 PRK14501 putative bifunctional 90.1 0.46 9.9E-06 46.5 4.9 64 190-267 657-720 (726)
224 KOG3107 Predicted haloacid deh 89.6 2.4 5.1E-05 37.5 8.2 83 150-238 368-452 (468)
225 PLN02205 alpha,alpha-trehalose 89.3 0.65 1.4E-05 46.1 5.3 67 190-268 762-842 (854)
226 PLN02580 trehalose-phosphatase 89.3 0.69 1.5E-05 41.4 5.0 70 190-268 301-374 (384)
227 KOG2882 p-Nitrophenyl phosphat 89.0 0.93 2E-05 38.8 5.3 86 124-215 24-115 (306)
228 PF13344 Hydrolase_6: Haloacid 88.3 0.22 4.7E-06 35.7 0.9 13 5-17 1-13 (101)
229 PF03031 NIF: NLI interacting 88.1 0.21 4.5E-06 38.8 0.8 15 3-17 1-15 (159)
230 KOG2469 IMP-GMP specific 5'-nu 88.1 2.7 5.9E-05 37.5 7.7 93 144-239 206-335 (424)
231 TIGR01484 HAD-SF-IIB HAD-super 87.7 0.38 8.3E-06 38.8 2.2 14 4-17 1-14 (204)
232 PRK00208 thiG thiazole synthas 87.7 3.2 7E-05 34.7 7.5 95 138-242 103-209 (250)
233 PRK11840 bifunctional sulfur c 87.7 3.5 7.6E-05 35.9 8.0 94 138-241 177-282 (326)
234 KOG0204 Calcium transporting A 87.3 6.2 0.00014 38.8 10.0 105 139-258 647-780 (1034)
235 COG2022 ThiG Uncharacterized e 86.8 4 8.7E-05 33.7 7.4 93 138-240 110-214 (262)
236 PRK10444 UMP phosphatase; Prov 86.1 1.3 2.9E-05 37.2 4.6 46 140-186 18-69 (248)
237 PF05690 ThiG: Thiazole biosyn 85.2 1.4 3E-05 36.5 4.1 92 138-239 103-206 (247)
238 PLN02423 phosphomannomutase 84.7 0.96 2.1E-05 37.9 3.2 35 232-267 202-240 (245)
239 PTZ00174 phosphomannomutase; P 84.6 1.5 3.3E-05 36.7 4.3 16 2-17 5-20 (247)
240 COG0731 Fe-S oxidoreductases [ 84.1 3.4 7.4E-05 35.6 6.2 44 136-186 89-136 (296)
241 PRK14502 bifunctional mannosyl 84.1 1.1 2.4E-05 42.9 3.6 45 190-239 613-659 (694)
242 TIGR02245 HAD_IIID1 HAD-superf 84.0 4.4 9.6E-05 32.7 6.5 81 140-221 46-144 (195)
243 KOG0210 P-type ATPase [Inorgan 81.6 6 0.00013 38.1 7.1 65 190-267 768-832 (1051)
244 TIGR00685 T6PP trehalose-phosp 81.6 0.72 1.6E-05 38.6 1.2 33 164-198 170-202 (244)
245 PLN03063 alpha,alpha-trehalose 81.2 2.6 5.7E-05 41.7 5.1 18 251-268 764-781 (797)
246 PLN02205 alpha,alpha-trehalose 80.8 2.3 5E-05 42.3 4.6 17 1-17 595-611 (854)
247 PRK00192 mannosyl-3-phosphogly 80.4 2.7 5.8E-05 35.7 4.3 38 142-180 24-64 (273)
248 KOG0323 TFIIF-interacting CTD 77.1 6.1 0.00013 37.7 5.8 82 137-221 199-284 (635)
249 KOG3040 Predicted sugar phosph 76.7 15 0.00033 30.0 7.2 74 140-221 24-104 (262)
250 KOG0209 P-type ATPase [Inorgan 75.7 6.3 0.00014 38.7 5.5 40 137-177 673-715 (1160)
251 PF06437 ISN1: IMP-specific 5' 75.6 4 8.7E-05 36.3 4.0 46 189-240 348-402 (408)
252 TIGR02329 propionate_PrpR prop 72.2 7.9 0.00017 36.4 5.4 78 149-239 94-172 (526)
253 COG1877 OtsB Trehalose-6-phosp 72.1 2 4.3E-05 36.5 1.3 32 190-221 182-213 (266)
254 PLN02151 trehalose-phosphatase 71.5 7.2 0.00016 34.6 4.6 69 190-267 269-341 (354)
255 PLN02580 trehalose-phosphatase 71.1 2.1 4.5E-05 38.4 1.2 48 164-216 304-354 (384)
256 PLN02151 trehalose-phosphatase 71.1 2.1 4.6E-05 37.9 1.3 47 164-215 272-321 (354)
257 smart00577 CPDc catalytic doma 70.9 2.4 5.2E-05 32.4 1.4 15 3-17 3-17 (148)
258 PLN02588 glycerol-3-phosphate 70.8 42 0.00091 31.4 9.4 43 140-187 134-176 (525)
259 PLN03017 trehalose-phosphatase 70.6 8.9 0.00019 34.2 5.0 69 190-267 283-355 (366)
260 PLN03017 trehalose-phosphatase 70.5 2.2 4.7E-05 38.0 1.2 48 164-216 286-336 (366)
261 TIGR02245 HAD_IIID1 HAD-superf 69.9 2.4 5.3E-05 34.2 1.3 15 3-17 22-36 (195)
262 COG5083 SMP2 Uncharacterized p 68.0 4.1 8.9E-05 36.8 2.4 15 3-17 376-390 (580)
263 PRK14501 putative bifunctional 67.4 2.6 5.7E-05 41.2 1.2 14 3-16 493-506 (726)
264 KOG4549 Magnesium-dependent ph 67.3 31 0.00067 25.8 6.4 81 137-218 42-134 (144)
265 PRK01158 phosphoglycolate phos 65.4 9.8 0.00021 31.1 4.1 30 149-179 33-62 (230)
266 COG4502 5'(3')-deoxyribonucleo 65.2 51 0.0011 25.2 7.3 98 139-266 68-173 (180)
267 TIGR02251 HIF-SF_euk Dullard-l 64.9 3.6 7.9E-05 32.1 1.3 15 3-17 2-16 (162)
268 KOG2134 Polynucleotide kinase 64.6 3.4 7.4E-05 36.7 1.2 15 3-17 76-90 (422)
269 PRK10530 pyridoxal phosphate ( 62.6 14 0.00029 31.1 4.6 29 149-178 33-61 (272)
270 KOG3189 Phosphomannomutase [Li 62.5 13 0.00028 30.2 3.9 24 190-216 193-216 (252)
271 TIGR03470 HpnH hopanoid biosyn 62.4 21 0.00046 31.2 5.8 99 136-240 81-201 (318)
272 PF02358 Trehalose_PPase: Treh 62.0 3.6 7.8E-05 34.1 0.9 32 190-221 165-199 (235)
273 PRK15424 propionate catabolism 61.9 16 0.00034 34.6 5.1 78 149-239 104-182 (538)
274 KOG0203 Na+/K+ ATPase, alpha s 61.8 11 0.00025 37.0 4.2 37 139-176 590-629 (1019)
275 PRK12702 mannosyl-3-phosphogly 61.4 13 0.00028 32.2 4.1 31 148-179 30-60 (302)
276 PRK13762 tRNA-modifying enzyme 60.9 56 0.0012 28.7 8.1 29 136-164 139-170 (322)
277 PRK15126 thiamin pyrimidine py 60.1 13 0.00029 31.3 4.0 30 149-179 32-61 (272)
278 PRK06769 hypothetical protein; 59.4 5.2 0.00011 31.5 1.3 13 2-14 4-16 (173)
279 PRK00994 F420-dependent methyl 58.4 85 0.0018 26.3 8.0 82 150-238 29-117 (277)
280 PF06506 PrpR_N: Propionate ca 57.8 3.8 8.2E-05 32.4 0.3 78 149-240 74-153 (176)
281 PF02358 Trehalose_PPase: Treh 56.5 13 0.00029 30.7 3.4 47 165-216 169-219 (235)
282 TIGR01689 EcbF-BcbF capsule bi 55.8 29 0.00064 25.8 4.8 27 139-165 24-53 (126)
283 COG0561 Cof Predicted hydrolas 55.1 18 0.00038 30.4 4.0 29 149-178 33-61 (264)
284 TIGR02468 sucrsPsyn_pln sucros 55.0 49 0.0011 33.9 7.4 70 149-221 904-989 (1050)
285 PTZ00445 p36-lilke protein; Pr 54.8 5 0.00011 32.8 0.5 14 2-15 43-56 (219)
286 PLN02382 probable sucrose-phos 53.5 6.9 0.00015 35.6 1.3 48 165-221 179-229 (413)
287 TIGR01668 YqeG_hyp_ppase HAD s 53.2 7.8 0.00017 30.4 1.4 15 3-17 26-40 (170)
288 KOG1618 Predicted phosphatase 51.5 78 0.0017 27.8 7.1 84 138-234 50-143 (389)
289 PF02593 dTMP_synthase: Thymid 51.2 46 0.001 27.4 5.6 85 138-231 58-155 (217)
290 TIGR02250 FCP1_euk FCP1-like p 51.0 8.5 0.00018 29.8 1.3 14 4-17 8-21 (156)
291 PF06014 DUF910: Bacterial pro 48.2 7.4 0.00016 25.1 0.4 23 195-221 7-29 (62)
292 TIGR02244 HAD-IG-Ncltidse HAD 47.9 19 0.00042 31.8 3.1 25 2-26 12-37 (343)
293 KOG3217 Protein tyrosine phosp 46.0 41 0.0009 25.8 4.1 71 135-215 51-121 (159)
294 cd01481 vWA_collagen_alpha3-VI 45.7 35 0.00075 26.6 4.0 52 206-257 107-160 (165)
295 PLN03064 alpha,alpha-trehalose 45.4 10 0.00023 38.1 1.2 15 3-17 592-606 (934)
296 PF09949 DUF2183: Uncharacteri 40.1 1.2E+02 0.0025 21.6 5.6 30 190-221 50-80 (100)
297 PRK00994 F420-dependent methyl 39.1 99 0.0021 25.9 5.6 41 136-177 68-111 (277)
298 PF10113 Fibrillarin_2: Fibril 38.7 38 0.00083 30.7 3.5 53 194-246 210-263 (505)
299 PLN02331 phosphoribosylglycina 36.9 1.7E+02 0.0037 23.8 6.8 50 183-236 4-55 (207)
300 COG0299 PurN Folate-dependent 36.6 1.5E+02 0.0032 24.1 6.2 60 183-246 5-67 (200)
301 COG0241 HisB Histidinol phosph 36.1 21 0.00045 28.5 1.3 15 3-17 6-20 (181)
302 cd01475 vWA_Matrilin VWA_Matri 35.9 89 0.0019 25.5 5.2 62 206-267 109-176 (224)
303 smart00266 CAD Domains present 35.4 22 0.00048 23.8 1.2 14 4-17 40-53 (74)
304 PF07279 DUF1442: Protein of u 35.3 2.2E+02 0.0048 23.5 7.1 87 141-240 26-125 (218)
305 cd06537 CIDE_N_B CIDE_N domain 33.8 24 0.00052 24.0 1.2 14 4-17 41-54 (81)
306 PF02350 Epimerase_2: UDP-N-ac 33.7 65 0.0014 28.5 4.3 83 151-239 7-100 (346)
307 PF08620 RPAP1_C: RPAP1-like, 33.3 16 0.00035 24.4 0.3 10 5-14 3-12 (73)
308 cd06539 CIDE_N_A CIDE_N domain 33.2 25 0.00055 23.8 1.2 14 4-17 42-55 (78)
309 COG3769 Predicted hydrolase (H 32.4 2.4E+02 0.0052 23.6 6.8 29 148-177 35-63 (274)
310 KOG1618 Predicted phosphatase 31.0 46 0.00099 29.2 2.6 32 205-240 296-343 (389)
311 COG0761 lytB 4-Hydroxy-3-methy 30.4 1.6E+02 0.0035 25.4 5.8 50 190-247 225-274 (294)
312 cd01615 CIDE_N CIDE_N domain, 30.0 30 0.00066 23.4 1.2 14 4-17 42-55 (78)
313 cd06536 CIDE_N_ICAD CIDE_N dom 29.0 32 0.0007 23.4 1.2 14 4-17 44-57 (80)
314 PF00532 Peripla_BP_1: Peripla 28.9 1.4E+02 0.003 25.3 5.4 57 143-201 22-78 (279)
315 KOG1605 TFIIF-interacting CTD 28.2 32 0.00068 29.2 1.3 16 2-17 89-104 (262)
316 PF06901 FrpC: RTX iron-regula 27.6 31 0.00066 27.7 1.0 13 3-15 59-71 (271)
317 COG1411 Uncharacterized protei 27.1 81 0.0017 25.7 3.3 46 186-239 164-212 (229)
318 PF05761 5_nucleotid: 5' nucle 26.5 56 0.0012 30.1 2.6 17 2-18 12-28 (448)
319 KOG2469 IMP-GMP specific 5'-nu 25.7 35 0.00076 30.8 1.1 16 3-18 28-43 (424)
320 PLN02887 hydrolase family prot 25.4 1.2E+02 0.0026 29.1 4.6 38 139-177 325-365 (580)
321 cd06538 CIDE_N_FSP27 CIDE_N do 25.2 41 0.0009 22.8 1.2 14 4-17 41-54 (79)
322 PF02606 LpxK: Tetraacyldisacc 23.3 3.4E+02 0.0074 23.8 6.8 17 146-162 59-75 (326)
323 COG0381 WecB UDP-N-acetylgluco 23.0 2.2E+02 0.0048 25.6 5.6 87 149-239 28-125 (383)
324 PF05728 UPF0227: Uncharacteri 22.9 1.7E+02 0.0036 23.4 4.4 43 205-248 57-99 (187)
325 COG1548 Predicted transcriptio 22.8 2.5E+02 0.0055 24.0 5.5 54 142-196 268-325 (330)
326 PF02017 CIDE-N: CIDE-N domain 22.7 49 0.0011 22.4 1.1 14 4-17 42-55 (78)
327 PF08013 Tagatose_6_P_K: Tagat 22.6 2.5E+02 0.0055 25.6 5.9 96 144-241 4-131 (424)
328 PF13580 SIS_2: SIS domain; PD 21.9 3.4E+02 0.0074 20.1 6.3 87 150-237 33-137 (138)
329 PF13911 AhpC-TSA_2: AhpC/TSA 21.9 2.7E+02 0.0059 19.7 5.2 48 146-200 7-54 (115)
330 TIGR00236 wecB UDP-N-acetylglu 21.7 4.4E+02 0.0095 23.0 7.4 81 152-239 28-119 (365)
331 PF01993 MTD: methylene-5,6,7, 21.5 1.8E+02 0.004 24.4 4.4 80 150-236 28-114 (276)
332 COG1058 CinA Predicted nucleot 21.3 73 0.0016 26.9 2.2 51 190-241 21-71 (255)
333 PF04413 Glycos_transf_N: 3-De 20.9 60 0.0013 25.9 1.6 79 137-220 103-185 (186)
334 cd01766 Ufm1 Urm1-like ubiquit 20.6 2.4E+02 0.0052 18.9 4.0 41 187-231 24-64 (82)
335 PF07085 DRTGG: DRTGG domain; 20.6 1E+02 0.0022 21.7 2.6 36 207-246 41-77 (105)
336 COG4483 Uncharacterized protei 20.4 45 0.00097 21.7 0.6 23 195-221 7-29 (68)
337 PF05116 S6PP: Sucrose-6F-phos 20.2 1.6E+02 0.0036 24.5 4.1 36 149-186 32-67 (247)
338 cd07044 CofD_YvcK Family of Co 20.1 5.9E+02 0.013 22.2 7.6 60 139-200 193-263 (309)
339 PRK13010 purU formyltetrahydro 20.1 4.8E+02 0.01 22.5 7.0 20 153-172 94-113 (289)
No 1
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=99.97 E-value=3.6e-31 Score=219.07 Aligned_cols=124 Identities=28% Similarity=0.355 Sum_probs=112.7
Q ss_pred cCCCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecCC----CChHHHHHHHHhcCCCCCCcE
Q 024415 137 ANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGT----GPKVEVLKQLQKKPELQGMTL 209 (268)
Q Consensus 137 ~~~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~~----~pk~~~~~~~~~~~~~~~~~~ 209 (268)
..+++||+.++| +++|++++|+||+++..++..+++ +|+..+|+.+++.+. ||+|..+..++.+++..|+++
T Consensus 87 ~~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~-~gl~~~F~~i~g~~~~~~~KP~P~~l~~~~~~~~~~~~~~ 165 (220)
T COG0546 87 ESRLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKA-LGLADYFDVIVGGDDVPPPKPDPEPLLLLLEKLGLDPEEA 165 (220)
T ss_pred cCccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHH-hCCccccceEEcCCCCCCCCcCHHHHHHHHHHhCCChhhe
Confidence 468999999999 799999999999999999999999 899999999999543 589999999999999998999
Q ss_pred EEEecCccchhcccccccccCCeEEEeecCCCCHHHHHhhcCCCCEEEcCHhHHHhhc
Q 024415 210 HFVEDRLATLKNVIKEPELDGWNLYLGDWGYNTQKEREEAASIPRIQLLQLSDFSRKL 267 (268)
Q Consensus 210 l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~~~~p~~~~~~~~~l~~~l 267 (268)
+||||+..|+++ |++||+.+|+|.|||+..+.+.. ..||+++.++.||...|
T Consensus 166 l~VGDs~~Di~a----A~~Ag~~~v~v~~g~~~~~~l~~--~~~d~vi~~~~el~~~l 217 (220)
T COG0546 166 LMVGDSLNDILA----AKAAGVPAVGVTWGYNSREELAQ--AGADVVIDSLAELLALL 217 (220)
T ss_pred EEECCCHHHHHH----HHHcCCCEEEEECCCCCCcchhh--cCCCEEECCHHHHHHHH
Confidence 999999999999 99999999999999875555555 56899999999998765
No 2
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=99.97 E-value=3.1e-30 Score=214.86 Aligned_cols=125 Identities=17% Similarity=0.156 Sum_probs=110.9
Q ss_pred ccCCCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecCC----CChHHHHHHHHhcCCCCCCc
Q 024415 136 GANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGT----GPKVEVLKQLQKKPELQGMT 208 (268)
Q Consensus 136 ~~~~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~~----~pk~~~~~~~~~~~~~~~~~ 208 (268)
...+++||+.++| +++|++++|+||++...+...++. +|+..+|+.+++++. ||+|+++.++.++++++|++
T Consensus 92 ~~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~-~~l~~~f~~i~~~~~~~~~KP~p~~~~~~~~~l~~~p~~ 170 (229)
T PRK13226 92 TQSQLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQ-LGWEQRCAVLIGGDTLAERKPHPLPLLVAAERIGVAPTD 170 (229)
T ss_pred hcCeeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHH-cCchhcccEEEecCcCCCCCCCHHHHHHHHHHhCCChhh
Confidence 4567999999999 689999999999999999999999 899999999988764 59999999999999999999
Q ss_pred EEEEecCccchhcccccccccCCeEEEeecCCCCH-HHHHhhcCCCCEEEcCHhHHHhhc
Q 024415 209 LHFVEDRLATLKNVIKEPELDGWNLYLGDWGYNTQ-KEREEAASIPRIQLLQLSDFSRKL 267 (268)
Q Consensus 209 ~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~~~-~~~~~~~~~p~~~~~~~~~l~~~l 267 (268)
|+||||+.+|+++ |+++|+.+|++.||+... ..+.. ..|++.++++.+|.++|
T Consensus 171 ~l~IGDs~~Di~a----A~~aG~~~i~v~~g~~~~~~~~~~--~~~~~~i~~~~el~~~~ 224 (229)
T PRK13226 171 CVYVGDDERDILA----ARAAGMPSVAALWGYRLHDDDPLA--WQADVLVEQPQLLWNPA 224 (229)
T ss_pred EEEeCCCHHHHHH----HHHCCCcEEEEeecCCCCCcChhh--cCCCeeeCCHHHHHHHh
Confidence 9999999999999 999999999999998533 23333 46999999999998876
No 3
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=99.97 E-value=6.6e-30 Score=210.81 Aligned_cols=125 Identities=18% Similarity=0.121 Sum_probs=113.7
Q ss_pred ccCCCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecCC----CChHHHHHHHHhcCCCCCCc
Q 024415 136 GANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGT----GPKVEVLKQLQKKPELQGMT 208 (268)
Q Consensus 136 ~~~~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~~----~pk~~~~~~~~~~~~~~~~~ 208 (268)
...+++||+.++| +++|++++|+||+....+...++. +|+..+|+.+++++. +|+|+++.++..+++.+|++
T Consensus 79 ~~~~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~-~gl~~~f~~i~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~ 157 (214)
T PRK13288 79 ELVTEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKL-TGLDEFFDVVITLDDVEHAKPDPEPVLKALELLGAKPEE 157 (214)
T ss_pred hhcccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHH-cCChhceeEEEecCcCCCCCCCcHHHHHHHHHcCCCHHH
Confidence 4467999999999 588999999999999999999999 899999999999864 59999999999999999999
Q ss_pred EEEEecCccchhcccccccccCCeEEEeecCCCCHHHHHhhcCCCCEEEcCHhHHHhhc
Q 024415 209 LHFVEDRLATLKNVIKEPELDGWNLYLGDWGYNTQKEREEAASIPRIQLLQLSDFSRKL 267 (268)
Q Consensus 209 ~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~~~~p~~~~~~~~~l~~~l 267 (268)
++||||+.+|+++ |+++|+.+|++.||+....++.+ ..|++.+.++.++.+++
T Consensus 158 ~~~iGDs~~Di~a----a~~aG~~~i~v~~g~~~~~~l~~--~~~~~~i~~~~~l~~~i 210 (214)
T PRK13288 158 ALMVGDNHHDILA----GKNAGTKTAGVAWTIKGREYLEQ--YKPDFMLDKMSDLLAIV 210 (214)
T ss_pred EEEECCCHHHHHH----HHHCCCeEEEEcCCCCCHHHHhh--cCcCEEECCHHHHHHHH
Confidence 9999999999999 99999999999999877666655 46889999999998875
No 4
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=99.96 E-value=4e-29 Score=211.31 Aligned_cols=126 Identities=11% Similarity=-0.003 Sum_probs=111.2
Q ss_pred hccCCCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCC-CeEEecCC----CChHHHHHHHHhcCCCC-
Q 024415 135 IGANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPP-DRIYGLGT----GPKVEVLKQLQKKPELQ- 205 (268)
Q Consensus 135 ~~~~~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f-~~i~~~~~----~pk~~~~~~~~~~~~~~- 205 (268)
....+++||+.++| +++|++++|+||++...++..++. +|+..+| +.|++++. ||+|+++..+.++++..
T Consensus 95 ~~~~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~-~gl~~~f~d~ii~~~~~~~~KP~p~~~~~a~~~l~~~~ 173 (253)
T TIGR01422 95 AEYSSPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPE-AALQGYRPDYNVTTDDVPAGRPAPWMALKNAIELGVYD 173 (253)
T ss_pred HhcCccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHH-HHhcCCCCceEEccccCCCCCCCHHHHHHHHHHcCCCC
Confidence 34568999999999 688999999999999999999999 7998885 88988864 59999999999999995
Q ss_pred CCcEEEEecCccchhcccccccccCCeEEEeecCCCC-----------------------HHHHHhhcCCCCEEEcCHhH
Q 024415 206 GMTLHFVEDRLATLKNVIKEPELDGWNLYLGDWGYNT-----------------------QKEREEAASIPRIQLLQLSD 262 (268)
Q Consensus 206 ~~~~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~~-----------------------~~~~~~~~~~p~~~~~~~~~ 262 (268)
|++|+|||||.+|+++ |+++|+.+|+|.||++. .+++.. ..||+++.++.+
T Consensus 174 ~~~~l~IGDs~~Di~a----A~~aGi~~i~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~v~~~~~e 247 (253)
T TIGR01422 174 VAACVKVGDTVPDIEE----GRNAGMWTVGLILSSNELGLSEEEYRALDPAELEARRAEATARLKA--AGAHYVIDTLAE 247 (253)
T ss_pred chheEEECCcHHHHHH----HHHCCCeEEEEecCCcccCCCHHHHHhCCHHHHHHHHHHHHHHHHh--cCCCEehhcHHH
Confidence 9999999999999999 99999999999999862 235554 578999999999
Q ss_pred HHhhc
Q 024415 263 FSRKL 267 (268)
Q Consensus 263 l~~~l 267 (268)
|..+|
T Consensus 248 l~~~~ 252 (253)
T TIGR01422 248 LPAVI 252 (253)
T ss_pred HHHhh
Confidence 98765
No 5
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=99.96 E-value=7.6e-29 Score=208.83 Aligned_cols=121 Identities=11% Similarity=-0.008 Sum_probs=108.9
Q ss_pred ccCCCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecCC----CChHHHHHHHHhcCCCCCCc
Q 024415 136 GANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGT----GPKVEVLKQLQKKPELQGMT 208 (268)
Q Consensus 136 ~~~~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~~----~pk~~~~~~~~~~~~~~~~~ 208 (268)
...+++||+.++| +++|++++|+||++...++..+++ +|+..+|+.+++++. ||+|+++.++.++++++|++
T Consensus 105 ~~~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~-~gl~~~Fd~iv~~~~~~~~KP~p~~~~~a~~~~~~~~~~ 183 (248)
T PLN02770 105 EQLKPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISL-LGLSDFFQAVIIGSECEHAKPHPDPYLKALEVLKVSKDH 183 (248)
T ss_pred hcCCcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHH-cCChhhCcEEEecCcCCCCCCChHHHHHHHHHhCCChhH
Confidence 4567999999999 689999999999999999999999 899999999999875 59999999999999999999
Q ss_pred EEEEecCccchhcccccccccCCeEEEeecCCCCHHHHHhhcCCCCEEEcCHhHHH
Q 024415 209 LHFVEDRLATLKNVIKEPELDGWNLYLGDWGYNTQKEREEAASIPRIQLLQLSDFS 264 (268)
Q Consensus 209 ~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~~~~p~~~~~~~~~l~ 264 (268)
|+||||+..|+++ |+++|+.+|++.||+ ..+.+.. ..|++++.++.|+.
T Consensus 184 ~l~vgDs~~Di~a----A~~aGi~~i~v~~g~-~~~~l~~--~~a~~vi~~~~e~~ 232 (248)
T PLN02770 184 TFVFEDSVSGIKA----GVAAGMPVVGLTTRN-PESLLME--AKPTFLIKDYEDPK 232 (248)
T ss_pred EEEEcCCHHHHHH----HHHCCCEEEEEeCCC-CHHHHhh--cCCCEEeccchhhH
Confidence 9999999999999 999999999999985 5545554 56899999999843
No 6
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=99.96 E-value=2.2e-28 Score=208.26 Aligned_cols=126 Identities=11% Similarity=0.023 Sum_probs=109.4
Q ss_pred hccCCCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCC-CCeEEecCC----CChHHHHHHHHhcCCCC-
Q 024415 135 IGANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIP-PDRIYGLGT----GPKVEVLKQLQKKPELQ- 205 (268)
Q Consensus 135 ~~~~~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~-f~~i~~~~~----~pk~~~~~~~~~~~~~~- 205 (268)
.....++||+.++| +++|++++|+||+....+...++. +++..+ |+.|++++. ||+|+++..+.+++++.
T Consensus 97 ~~~~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~-~~l~~~~~d~i~~~~~~~~~KP~p~~~~~a~~~l~~~~ 175 (267)
T PRK13478 97 ADYATPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPL-AAAQGYRPDHVVTTDDVPAGRPYPWMALKNAIELGVYD 175 (267)
T ss_pred hhcCCCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHH-HhhcCCCceEEEcCCcCCCCCCChHHHHHHHHHcCCCC
Confidence 34568999999999 688999999999999999999998 788776 488888864 49999999999999996
Q ss_pred CCcEEEEecCccchhcccccccccCCeEEEeecCCCC-----------------------HHHHHhhcCCCCEEEcCHhH
Q 024415 206 GMTLHFVEDRLATLKNVIKEPELDGWNLYLGDWGYNT-----------------------QKEREEAASIPRIQLLQLSD 262 (268)
Q Consensus 206 ~~~~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~~-----------------------~~~~~~~~~~p~~~~~~~~~ 262 (268)
|++|+||||+++|+++ |+++|+.+|+|.||++. .+.+.. ..|++++.++.+
T Consensus 176 ~~e~l~IGDs~~Di~a----A~~aG~~~i~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~a~~vi~~~~~ 249 (267)
T PRK13478 176 VAACVKVDDTVPGIEE----GLNAGMWTVGVILSGNELGLSEEEYQALSAAELAARRERARARLRA--AGAHYVIDTIAD 249 (267)
T ss_pred CcceEEEcCcHHHHHH----HHHCCCEEEEEccCcccccCCHHHHHhcCHHHHHHHHHHHHHHHHH--cCCCeehhhHHH
Confidence 6999999999999999 99999999999999863 234544 568899999999
Q ss_pred HHhhc
Q 024415 263 FSRKL 267 (268)
Q Consensus 263 l~~~l 267 (268)
|..+|
T Consensus 250 l~~~l 254 (267)
T PRK13478 250 LPAVI 254 (267)
T ss_pred HHHHH
Confidence 98765
No 7
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=99.96 E-value=6.7e-29 Score=204.45 Aligned_cols=125 Identities=18% Similarity=0.264 Sum_probs=112.8
Q ss_pred ccCCCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecCC----CChHHHHHHHHhcCCCCCCc
Q 024415 136 GANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGT----GPKVEVLKQLQKKPELQGMT 208 (268)
Q Consensus 136 ~~~~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~~----~pk~~~~~~~~~~~~~~~~~ 208 (268)
....++||+.++| +++|++++|+||+....++..+++ +|+..+|+.+++++. ||+|+++.++.++++++|++
T Consensus 82 ~~~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~-~~l~~~f~~~~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~ 160 (213)
T TIGR01449 82 ELTSVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLEL-LGLAKYFSVLIGGDSLAQRKPHPDPLLLAAERLGVAPQQ 160 (213)
T ss_pred ccCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHH-cCcHhhCcEEEecCCCCCCCCChHHHHHHHHHcCCChhH
Confidence 3468999999999 688999999999999999999999 899999999998864 59999999999999999999
Q ss_pred EEEEecCccchhcccccccccCCeEEEeecCCCCHHHHHhhcCCCCEEEcCHhHHHhhc
Q 024415 209 LHFVEDRLATLKNVIKEPELDGWNLYLGDWGYNTQKEREEAASIPRIQLLQLSDFSRKL 267 (268)
Q Consensus 209 ~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~~~~p~~~~~~~~~l~~~l 267 (268)
++||||+.+|+++ |+++|+.+|++.||++..+.+.. ..|++++.++.+|..+|
T Consensus 161 ~~~igDs~~d~~a----a~~aG~~~i~v~~g~~~~~~l~~--~~a~~~i~~~~~l~~~~ 213 (213)
T TIGR01449 161 MVYVGDSRVDIQA----ARAAGCPSVLLTYGYRYGEAIDL--LPPDVLYDSLNELPPLL 213 (213)
T ss_pred eEEeCCCHHHHHH----HHHCCCeEEEEccCCCCCcchhh--cCCCeEeCCHHHHHhhC
Confidence 9999999999999 99999999999999876655654 46889999999998764
No 8
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=99.96 E-value=1.9e-28 Score=202.88 Aligned_cols=125 Identities=16% Similarity=0.109 Sum_probs=113.1
Q ss_pred cCCCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCC--CCCCeEEecCC----CChHHHHHHHHhcCCCC-C
Q 024415 137 ANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVT--IPPDRIYGLGT----GPKVEVLKQLQKKPELQ-G 206 (268)
Q Consensus 137 ~~~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~--~~f~~i~~~~~----~pk~~~~~~~~~~~~~~-~ 206 (268)
..+++||+.++| +++|++++|+||+....+...++. +|+. .+|+.+++++. ||+|+++..+..++++. |
T Consensus 85 ~~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~-~~l~~~~~f~~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~ 163 (220)
T TIGR03351 85 PPVALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEK-LGWTVGDDVDAVVCPSDVAAGRPAPDLILRAMELTGVQDV 163 (220)
T ss_pred CCccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHH-hhhhhhccCCEEEcCCcCCCCCCCHHHHHHHHHHcCCCCh
Confidence 458999999999 688999999999999999999999 7998 99999999865 49999999999999997 7
Q ss_pred CcEEEEecCccchhcccccccccCCeE-EEeecCCCCHHHHHhhcCCCCEEEcCHhHHHhhcC
Q 024415 207 MTLHFVEDRLATLKNVIKEPELDGWNL-YLGDWGYNTQKEREEAASIPRIQLLQLSDFSRKLK 268 (268)
Q Consensus 207 ~~~l~IGDs~~Di~~~~~~A~~aG~~~-v~v~~g~~~~~~~~~~~~~p~~~~~~~~~l~~~l~ 268 (268)
++|+||||+..|+++ |+++|+.+ |++.+|+...+.+.+ ..|++++.++.+|..++.
T Consensus 164 ~~~~~igD~~~Di~a----a~~aG~~~~i~~~~g~~~~~~~~~--~~~~~~i~~~~~l~~~~~ 220 (220)
T TIGR03351 164 QSVAVAGDTPNDLEA----GINAGAGAVVGVLTGAHDAEELSR--HPHTHVLDSVADLPALLD 220 (220)
T ss_pred hHeEEeCCCHHHHHH----HHHCCCCeEEEEecCCCcHHHHhh--cCCceeecCHHHHHHhhC
Confidence 999999999999999 99999999 999999877777765 468899999999988763
No 9
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=99.95 E-value=4.9e-28 Score=205.81 Aligned_cols=126 Identities=20% Similarity=0.271 Sum_probs=114.2
Q ss_pred hccCCCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecCCC-ChHHHHHHHHhcCCCCCCcEE
Q 024415 135 IGANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGTG-PKVEVLKQLQKKPELQGMTLH 210 (268)
Q Consensus 135 ~~~~~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~~~-pk~~~~~~~~~~~~~~~~~~l 210 (268)
....+++||+.++| +++|++++|+||+....+...++. +|+..+|+.+++++.. +|++++..++++.++.|++|+
T Consensus 138 ~~~~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~-~gl~~~F~~vi~~~~~~~k~~~~~~~l~~~~~~p~~~l 216 (273)
T PRK13225 138 LPALQLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQR-QGLRSLFSVVQAGTPILSKRRALSQLVAREGWQPAAVM 216 (273)
T ss_pred cccCCcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHH-cCChhheEEEEecCCCCCCHHHHHHHHHHhCcChhHEE
Confidence 34568999999999 688999999999999999999999 8999999998887664 889999999999999999999
Q ss_pred EEecCccchhcccccccccCCeEEEeecCCCCHHHHHhhcCCCCEEEcCHhHHHhhc
Q 024415 211 FVEDRLATLKNVIKEPELDGWNLYLGDWGYNTQKEREEAASIPRIQLLQLSDFSRKL 267 (268)
Q Consensus 211 ~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~~~~p~~~~~~~~~l~~~l 267 (268)
||||+..|+++ |+++|+.+|++.||++...++.. ..|++.+.++.+|..++
T Consensus 217 ~IGDs~~Di~a----A~~AG~~~I~v~~g~~~~~~l~~--~~ad~~i~~~~eL~~~~ 267 (273)
T PRK13225 217 YVGDETRDVEA----ARQVGLIAVAVTWGFNDRQSLVA--ACPDWLLETPSDLLQAV 267 (273)
T ss_pred EECCCHHHHHH----HHHCCCeEEEEecCCCCHHHHHH--CCCCEEECCHHHHHHHH
Confidence 99999999999 99999999999999988777765 57999999999998764
No 10
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=99.95 E-value=4.9e-28 Score=206.36 Aligned_cols=124 Identities=23% Similarity=0.277 Sum_probs=111.9
Q ss_pred cCCCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecCC----CChHHHHHHHHhcCCCCCCcE
Q 024415 137 ANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGT----GPKVEVLKQLQKKPELQGMTL 209 (268)
Q Consensus 137 ~~~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~~----~pk~~~~~~~~~~~~~~~~~~ 209 (268)
..+++||+.++| +.+|++++|+||++...++..++. +|+..+|+.+++++. +|+|++++.+.++.++.|++|
T Consensus 99 ~~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~-~~i~~~f~~i~~~d~~~~~Kp~p~~~~~~~~~~g~~~~~~ 177 (272)
T PRK13223 99 LTVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQ-MKIGRYFRWIIGGDTLPQKKPDPAALLFVMKMAGVPPSQS 177 (272)
T ss_pred CCccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHH-cCcHhhCeEEEecCCCCCCCCCcHHHHHHHHHhCCChhHE
Confidence 457899999999 588999999999999999999999 899999999998864 599999999999999999999
Q ss_pred EEEecCccchhcccccccccCCeEEEeecCCCCHHHHHhhcCCCCEEEcCHhHHHhhc
Q 024415 210 HFVEDRLATLKNVIKEPELDGWNLYLGDWGYNTQKEREEAASIPRIQLLQLSDFSRKL 267 (268)
Q Consensus 210 l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~~~~p~~~~~~~~~l~~~l 267 (268)
+||||+.+|+++ |+++|+.+++|.+|++....+.+ ..|+++++++.+|..++
T Consensus 178 l~IGD~~~Di~a----A~~aGi~~i~v~~G~~~~~~l~~--~~~~~vi~~l~el~~~~ 229 (272)
T PRK13223 178 LFVGDSRSDVLA----AKAAGVQCVALSYGYNHGRPIAE--ESPALVIDDLRALLPGC 229 (272)
T ss_pred EEECCCHHHHHH----HHHCCCeEEEEecCCCCchhhhh--cCCCEEECCHHHHHHHH
Confidence 999999999999 99999999999999877666655 46899999999998754
No 11
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=99.95 E-value=5.1e-28 Score=198.23 Aligned_cols=126 Identities=19% Similarity=0.274 Sum_probs=114.7
Q ss_pred ccCCCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecCC----CChHHHHHHHHhcCCCCCCc
Q 024415 136 GANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGT----GPKVEVLKQLQKKPELQGMT 208 (268)
Q Consensus 136 ~~~~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~~----~pk~~~~~~~~~~~~~~~~~ 208 (268)
...+++||+.++| +++|++++|+||+....+...++. +|+..+|+.+++++. ||+|+++..+.++++++|++
T Consensus 72 ~~~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~-~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~ 150 (205)
T TIGR01454 72 GEVEVFPGVPELLAELRADGVGTAIATGKSGPRARSLLEA-LGLLPLFDHVIGSDEVPRPKPAPDIVREALRLLDVPPED 150 (205)
T ss_pred cccccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHH-cCChhheeeEEecCcCCCCCCChHHHHHHHHHcCCChhh
Confidence 4568999999999 688999999999999999999999 899999999998864 59999999999999999999
Q ss_pred EEEEecCccchhcccccccccCCeEEEeecCCCCHHHHHhhcCCCCEEEcCHhHHHhhcC
Q 024415 209 LHFVEDRLATLKNVIKEPELDGWNLYLGDWGYNTQKEREEAASIPRIQLLQLSDFSRKLK 268 (268)
Q Consensus 209 ~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~~~~p~~~~~~~~~l~~~l~ 268 (268)
++||||+..|+.+ |+++|+.+|++.||++..+++.+ ..|++++.++.+|..+++
T Consensus 151 ~l~igD~~~Di~a----A~~~Gi~~i~~~~g~~~~~~l~~--~~~~~~~~~~~~l~~~~~ 204 (205)
T TIGR01454 151 AVMVGDAVTDLAS----ARAAGTATVAALWGEGDAGELLA--ARPDFLLRKPQSLLALCR 204 (205)
T ss_pred eEEEcCCHHHHHH----HHHcCCeEEEEEecCCChhhhhh--cCCCeeeCCHHHHHHHhh
Confidence 9999999999999 99999999999999988777765 468899999999988764
No 12
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=99.95 E-value=4.3e-27 Score=198.81 Aligned_cols=120 Identities=13% Similarity=0.108 Sum_probs=107.2
Q ss_pred cCCCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecCC----CChHHHHHHHHhcCCCCCCcE
Q 024415 137 ANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGT----GPKVEVLKQLQKKPELQGMTL 209 (268)
Q Consensus 137 ~~~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~~----~pk~~~~~~~~~~~~~~~~~~ 209 (268)
..+++||+.++| +++|++++|+||++...+...+++ +|+..+|+.+++++. ||+|+++..+.++++++|++|
T Consensus 107 ~~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~-~gl~~~Fd~ii~~~d~~~~KP~Pe~~~~a~~~l~~~p~~~ 185 (260)
T PLN03243 107 LYRLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEA-VGMEGFFSVVLAAEDVYRGKPDPEMFMYAAERLGFIPERC 185 (260)
T ss_pred CcccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHH-cCCHhhCcEEEecccCCCCCCCHHHHHHHHHHhCCChHHe
Confidence 457899999999 689999999999999999999999 899999999998864 599999999999999999999
Q ss_pred EEEecCccchhcccccccccCCeEEEeecCCCCHHHHHhhcCCCCEEEcCHhHHHhh
Q 024415 210 HFVEDRLATLKNVIKEPELDGWNLYLGDWGYNTQKEREEAASIPRIQLLQLSDFSRK 266 (268)
Q Consensus 210 l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~~~~p~~~~~~~~~l~~~ 266 (268)
+|||||..|+++ |+++|+.+|++. |+.....+. .|++++.++++|...
T Consensus 186 l~IgDs~~Di~a----A~~aG~~~i~v~-g~~~~~~l~----~ad~vi~~~~el~~~ 233 (260)
T PLN03243 186 IVFGNSNSSVEA----AHDGCMKCVAVA-GKHPVYELS----AGDLVVRRLDDLSVV 233 (260)
T ss_pred EEEcCCHHHHHH----HHHcCCEEEEEe-cCCchhhhc----cCCEEeCCHHHHHHH
Confidence 999999999999 999999999986 665554443 488999999998654
No 13
>PRK11587 putative phosphatase; Provisional
Probab=99.95 E-value=1.6e-27 Score=197.15 Aligned_cols=118 Identities=18% Similarity=0.091 Sum_probs=101.3
Q ss_pred ccCCCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecCC----CChHHHHHHHHhcCCCCCCc
Q 024415 136 GANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGT----GPKVEVLKQLQKKPELQGMT 208 (268)
Q Consensus 136 ~~~~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~~----~pk~~~~~~~~~~~~~~~~~ 208 (268)
...+++||+.++| +++|++++|+||+....+...++. .|+ .+|+.+++++. ||+|+++..+.++.++.|++
T Consensus 80 ~~~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~-~~l-~~~~~i~~~~~~~~~KP~p~~~~~~~~~~g~~p~~ 157 (218)
T PRK11587 80 EGITALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKA-AGL-PAPEVFVTAERVKRGKPEPDAYLLGAQLLGLAPQE 157 (218)
T ss_pred cCceeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHh-cCC-CCccEEEEHHHhcCCCCCcHHHHHHHHHcCCCccc
Confidence 4567999999999 689999999999998888888888 788 45788887753 59999999999999999999
Q ss_pred EEEEecCccchhcccccccccCCeEEEeecCCCCHHHHHhhcCCCCEEEcCHhHHH
Q 024415 209 LHFVEDRLATLKNVIKEPELDGWNLYLGDWGYNTQKEREEAASIPRIQLLQLSDFS 264 (268)
Q Consensus 209 ~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~~~~p~~~~~~~~~l~ 264 (268)
|+|||||..|+++ |+++|+.+|++.++... ... ..|++.+.++.+|.
T Consensus 158 ~l~igDs~~di~a----A~~aG~~~i~v~~~~~~-~~~----~~~~~~~~~~~el~ 204 (218)
T PRK11587 158 CVVVEDAPAGVLS----GLAAGCHVIAVNAPADT-PRL----DEVDLVLHSLEQLT 204 (218)
T ss_pred EEEEecchhhhHH----HHHCCCEEEEECCCCch-hhh----ccCCEEecchhhee
Confidence 9999999999999 99999999999887532 222 35889999999874
No 14
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=99.95 E-value=4.6e-27 Score=195.19 Aligned_cols=125 Identities=24% Similarity=0.326 Sum_probs=111.8
Q ss_pred ccCCCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecCC----CChHHHHHHHHhcCCCCCCc
Q 024415 136 GANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGT----GPKVEVLKQLQKKPELQGMT 208 (268)
Q Consensus 136 ~~~~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~~----~pk~~~~~~~~~~~~~~~~~ 208 (268)
...+++||+.++| +++|++++++||+....+...++. +|+..+|+.+++++. +|+|++++.+.++++.+|++
T Consensus 90 ~~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~-~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~ 168 (226)
T PRK13222 90 GGSRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEA-LGIADYFSVVIGGDSLPNKKPDPAPLLLACEKLGLDPEE 168 (226)
T ss_pred ccCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHH-cCCccCccEEEcCCCCCCCCcChHHHHHHHHHcCCChhh
Confidence 3567999999999 688999999999999999999999 899999999998764 59999999999999999999
Q ss_pred EEEEecCccchhcccccccccCCeEEEeecCCCCHHHHHhhcCCCCEEEcCHhHHHhhc
Q 024415 209 LHFVEDRLATLKNVIKEPELDGWNLYLGDWGYNTQKEREEAASIPRIQLLQLSDFSRKL 267 (268)
Q Consensus 209 ~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~~~~p~~~~~~~~~l~~~l 267 (268)
+++|||+.+|+.+ |+++|+.+|++.||+++..+... ..|++++.++.+|...|
T Consensus 169 ~i~igD~~~Di~~----a~~~g~~~i~v~~g~~~~~~~~~--~~~~~~i~~~~~l~~~l 221 (226)
T PRK13222 169 MLFVGDSRNDIQA----ARAAGCPSVGVTYGYNYGEPIAL--SEPDVVIDHFAELLPLL 221 (226)
T ss_pred eEEECCCHHHHHH----HHHCCCcEEEECcCCCCccchhh--cCCCEEECCHHHHHHHH
Confidence 9999999999999 99999999999999875555543 46889999999998765
No 15
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=99.95 E-value=2.2e-26 Score=201.46 Aligned_cols=119 Identities=11% Similarity=0.036 Sum_probs=106.5
Q ss_pred ccCCCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecCC----CChHHHHHHHHhcCCCCCCc
Q 024415 136 GANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGT----GPKVEVLKQLQKKPELQGMT 208 (268)
Q Consensus 136 ~~~~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~~----~pk~~~~~~~~~~~~~~~~~ 208 (268)
....++||+.++| +++|++++|+||+++..++..+++ +|+..+|+.|++++. ||+|+++..+..++++.|++
T Consensus 213 ~~~~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~-lgL~~yFd~Iv~sddv~~~KP~Peifl~A~~~lgl~Pee 291 (381)
T PLN02575 213 GIYRLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGS-IGIRGFFSVIVAAEDVYRGKPDPEMFIYAAQLLNFIPER 291 (381)
T ss_pred cCCCcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHH-cCCHHHceEEEecCcCCCCCCCHHHHHHHHHHcCCCccc
Confidence 3467999999999 689999999999999999999999 899999999999875 59999999999999999999
Q ss_pred EEEEecCccchhcccccccccCCeEEEeecCCCCHHHHHhhcCCCCEEEcCHhHHH
Q 024415 209 LHFVEDRLATLKNVIKEPELDGWNLYLGDWGYNTQKEREEAASIPRIQLLQLSDFS 264 (268)
Q Consensus 209 ~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~~~~p~~~~~~~~~l~ 264 (268)
|+||||+..|+++ |+++|+.+|++.+++ ...++ ..+++++.++.||.
T Consensus 292 cl~IGDS~~DIeA----Ak~AGm~~IgV~~~~-~~~~l----~~Ad~iI~s~~EL~ 338 (381)
T PLN02575 292 CIVFGNSNQTVEA----AHDARMKCVAVASKH-PIYEL----GAADLVVRRLDELS 338 (381)
T ss_pred EEEEcCCHHHHHH----HHHcCCEEEEECCCC-ChhHh----cCCCEEECCHHHHH
Confidence 9999999999999 999999999998764 33333 24789999999984
No 16
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=99.94 E-value=5.6e-27 Score=194.39 Aligned_cols=122 Identities=15% Similarity=0.158 Sum_probs=107.7
Q ss_pred ccCCCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecCC----CChHHHHHHHHhcCCCCCCc
Q 024415 136 GANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGT----GPKVEVLKQLQKKPELQGMT 208 (268)
Q Consensus 136 ~~~~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~~----~pk~~~~~~~~~~~~~~~~~ 208 (268)
...+++||+.++| +++|++++|+||+....++..++. +|+..+|+.+++++. +|+|+++..++.++++.|++
T Consensus 89 ~~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~-~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~ 167 (222)
T PRK10826 89 ETRPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTM-FDLRDYFDALASAEKLPYSKPHPEVYLNCAAKLGVDPLT 167 (222)
T ss_pred cCCCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHh-CcchhcccEEEEcccCCCCCCCHHHHHHHHHHcCCCHHH
Confidence 4568999999999 689999999999999999999999 899999999998864 49999999999999999999
Q ss_pred EEEEecCccchhcccccccccCCeEEEeecCCCCHHHHHhhcCCCCEEEcCHhHHHh
Q 024415 209 LHFVEDRLATLKNVIKEPELDGWNLYLGDWGYNTQKEREEAASIPRIQLLQLSDFSR 265 (268)
Q Consensus 209 ~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~~~~p~~~~~~~~~l~~ 265 (268)
|+||||+.+|+++ |+++|+.+|++.++....+. .. ..+++++.++.||..
T Consensus 168 ~~~igDs~~Di~a----A~~aG~~~i~v~~~~~~~~~-~~--~~~~~~~~~~~dl~~ 217 (222)
T PRK10826 168 CVALEDSFNGMIA----AKAARMRSIVVPAPEQQNDP-RW--ALADVKLESLTELTA 217 (222)
T ss_pred eEEEcCChhhHHH----HHHcCCEEEEecCCccCchh-hh--hhhheeccCHHHHhh
Confidence 9999999999999 99999999999988644322 22 247899999999864
No 17
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=99.94 E-value=1.8e-25 Score=185.05 Aligned_cols=122 Identities=20% Similarity=0.233 Sum_probs=105.6
Q ss_pred ccCCCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecCC----CChHHHHHHHHhcCCCCCCc
Q 024415 136 GANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGT----GPKVEVLKQLQKKPELQGMT 208 (268)
Q Consensus 136 ~~~~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~~----~pk~~~~~~~~~~~~~~~~~ 208 (268)
...+++||+.++| +++|++++|+||++...+...+++ +|+..+|+.+++++. ||+|+++..+.++++++|++
T Consensus 91 ~~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~-~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~ 169 (221)
T TIGR02253 91 AYLRVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLER-LGVRDFFDAVITSEEEGVEKPHPKIFYAALKRLGVKPEE 169 (221)
T ss_pred HhCCCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHh-CChHHhccEEEEeccCCCCCCCHHHHHHHHHHcCCChhh
Confidence 3457999999999 688999999999999999999999 899999999988764 49999999999999999999
Q ss_pred EEEEecCc-cchhcccccccccCCeEEEeecCCCCHHHHHhhcCCCCEEEcCHhHH
Q 024415 209 LHFVEDRL-ATLKNVIKEPELDGWNLYLGDWGYNTQKEREEAASIPRIQLLQLSDF 263 (268)
Q Consensus 209 ~l~IGDs~-~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~~~~p~~~~~~~~~l 263 (268)
++||||+. +|+.+ |+++|+.+|++.+++....+.. ....|++.+.++.+|
T Consensus 170 ~~~igDs~~~di~~----A~~aG~~~i~~~~~~~~~~~~~-~~~~~~~~i~~~~el 220 (221)
T TIGR02253 170 AVMVGDRLDKDIKG----AKNLGMKTVWINQGKSSKMEDD-VYPYPDYEISSLREL 220 (221)
T ss_pred EEEECCChHHHHHH----HHHCCCEEEEECCCCCcccccc-cccCCCeeeCcHHhh
Confidence 99999998 89999 9999999999998865332222 124688999999886
No 18
>PRK09449 dUMP phosphatase; Provisional
Probab=99.94 E-value=5.7e-26 Score=188.56 Aligned_cols=124 Identities=16% Similarity=0.123 Sum_probs=104.8
Q ss_pred ccCCCCCChHHHHH--cCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecCC----CChHHHHHHHHhcCCCC-CCc
Q 024415 136 GANRFYPGIPDALK--FASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGT----GPKVEVLKQLQKKPELQ-GMT 208 (268)
Q Consensus 136 ~~~~~~pg~~e~L~--~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~~----~pk~~~~~~~~~~~~~~-~~~ 208 (268)
...+++||+.++|+ ++|++++|+||+....++..++. +|+..+|+.+++++. ||+|+++..+.++++.. +++
T Consensus 92 ~~~~~~~g~~~~L~~L~~~~~~~i~Tn~~~~~~~~~l~~-~~l~~~fd~v~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~ 170 (224)
T PRK09449 92 EICTPLPGAVELLNALRGKVKMGIITNGFTELQQVRLER-TGLRDYFDLLVISEQVGVAKPDVAIFDYALEQMGNPDRSR 170 (224)
T ss_pred hcCccCccHHHHHHHHHhCCeEEEEeCCcHHHHHHHHHh-CChHHHcCEEEEECccCCCCCCHHHHHHHHHHcCCCCccc
Confidence 34678999999992 36899999999999999999999 899999999998864 59999999999999975 489
Q ss_pred EEEEecCc-cchhcccccccccCCeEEEeecCCCCHHHHHhhcCCCCEEEcCHhHHHhhcC
Q 024415 209 LHFVEDRL-ATLKNVIKEPELDGWNLYLGDWGYNTQKEREEAASIPRIQLLQLSDFSRKLK 268 (268)
Q Consensus 209 ~l~IGDs~-~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~~~~p~~~~~~~~~l~~~l~ 268 (268)
|+||||+. +|+++ |+++|+.+|++.++... .... ..|++.+.++.+|..+|+
T Consensus 171 ~~~vgD~~~~Di~~----A~~aG~~~i~~~~~~~~--~~~~--~~~~~~i~~~~el~~~l~ 223 (224)
T PRK09449 171 VLMVGDNLHSDILG----GINAGIDTCWLNAHGRE--QPEG--IAPTYQVSSLSELEQLLC 223 (224)
T ss_pred EEEEcCCcHHHHHH----HHHCCCcEEEECCCCCC--CCCC--CCCeEEECCHHHHHHHHh
Confidence 99999998 69999 99999999999854221 1111 358999999999988774
No 19
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=99.93 E-value=5e-26 Score=207.58 Aligned_cols=121 Identities=17% Similarity=0.258 Sum_probs=106.6
Q ss_pred ccCCCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecCC---CChHHHHHHHHhcCCCCCCcE
Q 024415 136 GANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGT---GPKVEVLKQLQKKPELQGMTL 209 (268)
Q Consensus 136 ~~~~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~~---~pk~~~~~~~~~~~~~~~~~~ 209 (268)
...+++||+.++| +++|++++|+||++...+...++. +|+..+|+.+++++. +|||+++..+.+++ .|++|
T Consensus 327 ~~~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~-~~l~~~f~~i~~~d~v~~~~kP~~~~~al~~l--~~~~~ 403 (459)
T PRK06698 327 GKGALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSY-YDLDQWVTETFSIEQINSLNKSDLVKSILNKY--DIKEA 403 (459)
T ss_pred cCCCcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHH-CCcHhhcceeEecCCCCCCCCcHHHHHHHHhc--CcceE
Confidence 3468999999999 689999999999999999999999 899999999999875 48999998888765 46899
Q ss_pred EEEecCccchhcccccccccCCeEEEeecCCCCHHHHHhhcCCCCEEEcCHhHHHhhc
Q 024415 210 HFVEDRLATLKNVIKEPELDGWNLYLGDWGYNTQKEREEAASIPRIQLLQLSDFSRKL 267 (268)
Q Consensus 210 l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~~~~p~~~~~~~~~l~~~l 267 (268)
++|||+..|+.+ |+++|+.+|++.|++...+++ ..|++.+.++.+|.+++
T Consensus 404 v~VGDs~~Di~a----Ak~AG~~~I~v~~~~~~~~~~----~~~d~~i~~l~el~~~l 453 (459)
T PRK06698 404 AVVGDRLSDINA----AKDNGLIAIGCNFDFAQEDEL----AQADIVIDDLLELKGIL 453 (459)
T ss_pred EEEeCCHHHHHH----HHHCCCeEEEEeCCCCccccc----CCCCEEeCCHHHHHHHH
Confidence 999999999999 999999999999987654443 25899999999998875
No 20
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=99.93 E-value=1.1e-24 Score=182.49 Aligned_cols=153 Identities=11% Similarity=0.051 Sum_probs=112.2
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCChHHHHH--cCCCeEEEEcCCCHHHHHHHHHHhcCCC
Q 024415 100 IKPVIMEDWSENRDALVDLFGKVRDEWMDKDLTTWIGANRFYPGIPDALK--FASSRIYIVTTKQSRFADALLRELAGVT 177 (268)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~e~L~--~~g~~i~ivTn~~~~~~~~~l~~~~gl~ 177 (268)
....++..+|.+.+............+. .|.....++||+.++|+ +.+++++|+||++.. ++. +|+.
T Consensus 79 ~l~~~~~~~g~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~gv~~~L~~L~~~~~l~i~Tn~~~~-----~~~-~gl~ 147 (238)
T PRK10748 79 AIEQAMLDAGLSAEEASAGADAAMINFA-----KWRSRIDVPQATHDTLKQLAKKWPLVAITNGNAQ-----PEL-FGLG 147 (238)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHH-----HHhhcCCCCccHHHHHHHHHcCCCEEEEECCCch-----HHH-CCcH
Confidence 3455667777755442222222222221 12344679999999992 345999999998764 477 7999
Q ss_pred CCCCeEEecCC----CChHHHHHHHHhcCCCCCCcEEEEecC-ccchhcccccccccCCeEEEeecCCCCHHHHHhhcCC
Q 024415 178 IPPDRIYGLGT----GPKVEVLKQLQKKPELQGMTLHFVEDR-LATLKNVIKEPELDGWNLYLGDWGYNTQKEREEAASI 252 (268)
Q Consensus 178 ~~f~~i~~~~~----~pk~~~~~~~~~~~~~~~~~~l~IGDs-~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~~~~ 252 (268)
.+|+.|++++. ||+|+++..+.++.++.|++|+||||+ ..|+.+ |+++|+.++|+..+.............
T Consensus 148 ~~fd~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~~~VGD~~~~Di~~----A~~aG~~~i~v~~~~~~~~~~~~~~~~ 223 (238)
T PRK10748 148 DYFEFVLRAGPHGRSKPFSDMYHLAAEKLNVPIGEILHVGDDLTTDVAG----AIRCGMQACWINPENGDLMQTWDSRLL 223 (238)
T ss_pred HhhceeEecccCCcCCCcHHHHHHHHHHcCCChhHEEEEcCCcHHHHHH----HHHCCCeEEEEcCCCccccccccccCC
Confidence 99999998864 599999999999999999999999999 599999 999999999998764321111111146
Q ss_pred CCEEEcCHhHHHhhc
Q 024415 253 PRIQLLQLSDFSRKL 267 (268)
Q Consensus 253 p~~~~~~~~~l~~~l 267 (268)
|++++.++.||.++|
T Consensus 224 p~~~i~~l~el~~~~ 238 (238)
T PRK10748 224 PHIEISRLASLTSLI 238 (238)
T ss_pred CCEEECCHHHHHhhC
Confidence 999999999999875
No 21
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=99.93 E-value=4.4e-25 Score=182.99 Aligned_cols=121 Identities=19% Similarity=0.280 Sum_probs=106.7
Q ss_pred cCCCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecCC----CChHHHHHHHHhcC-CCCCCc
Q 024415 137 ANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGT----GPKVEVLKQLQKKP-ELQGMT 208 (268)
Q Consensus 137 ~~~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~~----~pk~~~~~~~~~~~-~~~~~~ 208 (268)
..+++||+.++| +++ ++++|+||+....++..++. +|+..+|+.+++++. ||+|+++..+.++. +++|++
T Consensus 95 ~~~~~~g~~~~L~~l~~~-~~~~i~Sn~~~~~~~~~l~~-~~l~~~fd~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~ 172 (224)
T TIGR02254 95 GHQLLPGAFELMENLQQK-FRLYIVTNGVRETQYKRLRK-SGLFPFFDDIFVSEDAGIQKPDKEIFNYALERMPKFSKEE 172 (224)
T ss_pred cCeeCccHHHHHHHHHhc-CcEEEEeCCchHHHHHHHHH-CCcHhhcCEEEEcCccCCCCCCHHHHHHHHHHhcCCCchh
Confidence 457999999999 566 99999999999999999999 899999999998864 59999999999999 999999
Q ss_pred EEEEecCc-cchhcccccccccCCeEEEeecCCCCHHHHHhhcCCCCEEEcCHhHHHhhc
Q 024415 209 LHFVEDRL-ATLKNVIKEPELDGWNLYLGDWGYNTQKEREEAASIPRIQLLQLSDFSRKL 267 (268)
Q Consensus 209 ~l~IGDs~-~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~~~~p~~~~~~~~~l~~~l 267 (268)
++||||+. .|+++ |+++|+++|+++++..+. ... ..|++++.++.||..+|
T Consensus 173 ~v~igD~~~~di~~----A~~~G~~~i~~~~~~~~~--~~~--~~~~~~~~~~~el~~~~ 224 (224)
T TIGR02254 173 VLMIGDSLTADIKG----GQNAGLDTCWMNPDMHPN--PDD--IIPTYEIRSLEELYEIL 224 (224)
T ss_pred eEEECCCcHHHHHH----HHHCCCcEEEECCCCCCC--CCC--CCCceEECCHHHHHhhC
Confidence 99999998 79999 999999999999875442 122 46889999999998765
No 22
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=99.93 E-value=9.5e-26 Score=186.87 Aligned_cols=123 Identities=9% Similarity=0.039 Sum_probs=102.1
Q ss_pred ccCCCCCChHHHHHcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCC-eEEecCC----CChHHHHHHHHhcCCCCCCcEE
Q 024415 136 GANRFYPGIPDALKFASSRIYIVTTKQSRFADALLRELAGVTIPPD-RIYGLGT----GPKVEVLKQLQKKPELQGMTLH 210 (268)
Q Consensus 136 ~~~~~~pg~~e~L~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~-~i~~~~~----~pk~~~~~~~~~~~~~~~~~~l 210 (268)
....++||+.++|+..+++++|+||++...+...++. +|+..+|+ .+++++. ||+|+++..+.+++++.|++|+
T Consensus 85 ~~~~~~~gv~~~L~~L~~~~~ivTn~~~~~~~~~l~~-~~l~~~F~~~v~~~~~~~~~KP~p~~~~~a~~~~~~~p~~~l 163 (221)
T PRK10563 85 SELEPIAGANALLESITVPMCVVSNGPVSKMQHSLGK-TGMLHYFPDKLFSGYDIQRWKPDPALMFHAAEAMNVNVENCI 163 (221)
T ss_pred ccCCcCCCHHHHHHHcCCCEEEEeCCcHHHHHHHHHh-cChHHhCcceEeeHHhcCCCCCChHHHHHHHHHcCCCHHHeE
Confidence 4578999999999877899999999999999999999 89999996 6777642 5999999999999999999999
Q ss_pred EEecCccchhcccccccccCCeEEEeecCCCCHHHHHhhcCCCCEEEcCHhHHHhhc
Q 024415 211 FVEDRLATLKNVIKEPELDGWNLYLGDWGYNTQKEREEAASIPRIQLLQLSDFSRKL 267 (268)
Q Consensus 211 ~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~~~~p~~~~~~~~~l~~~l 267 (268)
||||+..|+++ |+++|+++|++.++.... .+.. .++.++.++.+|..++
T Consensus 164 ~igDs~~di~a----A~~aG~~~i~~~~~~~~~-~~~~---~~~~~~~~~~~l~~~~ 212 (221)
T PRK10563 164 LVDDSSAGAQS----GIAAGMEVFYFCADPHNK-PIDH---PLVTTFTDLAQLPELW 212 (221)
T ss_pred EEeCcHhhHHH----HHHCCCEEEEECCCCCCc-chhh---hhhHHHHHHHHHHHHH
Confidence 99999999999 999999999997654332 2221 2345578888877653
No 23
>PLN02940 riboflavin kinase
Probab=99.92 E-value=2.3e-25 Score=198.00 Aligned_cols=120 Identities=13% Similarity=0.094 Sum_probs=105.9
Q ss_pred ccCCCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHH-HhcCCCCCCCeEEecCC----CChHHHHHHHHhcCCCCCC
Q 024415 136 GANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLR-ELAGVTIPPDRIYGLGT----GPKVEVLKQLQKKPELQGM 207 (268)
Q Consensus 136 ~~~~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~-~~~gl~~~f~~i~~~~~----~pk~~~~~~~~~~~~~~~~ 207 (268)
....++||+.++| +++|++++|+||+++..+...++ . +|+..+|+.|++++. ||+|+++..++++++++|+
T Consensus 90 ~~~~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~-~gl~~~Fd~ii~~d~v~~~KP~p~~~~~a~~~lgv~p~ 168 (382)
T PLN02940 90 CNIKALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCH-QGWKESFSVIVGGDEVEKGKPSPDIFLEAAKRLNVEPS 168 (382)
T ss_pred ccCCCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhc-cChHhhCCEEEehhhcCCCCCCHHHHHHHHHHcCCChh
Confidence 3467899999999 68999999999999999988887 6 799999999999875 5999999999999999999
Q ss_pred cEEEEecCccchhcccccccccCCeEEEeecCCCCHHHHHhhcCCCCEEEcCHhHHH
Q 024415 208 TLHFVEDRLATLKNVIKEPELDGWNLYLGDWGYNTQKEREEAASIPRIQLLQLSDFS 264 (268)
Q Consensus 208 ~~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~~~~p~~~~~~~~~l~ 264 (268)
+|+||||+..|+++ |+++|+.+|++.|++.... .. ..|++.+.++.+|.
T Consensus 169 ~~l~VGDs~~Di~a----A~~aGi~~I~v~~g~~~~~--~~--~~ad~~i~sl~el~ 217 (382)
T PLN02940 169 NCLVIEDSLPGVMA----GKAAGMEVIAVPSIPKQTH--LY--SSADEVINSLLDLQ 217 (382)
T ss_pred HEEEEeCCHHHHHH----HHHcCCEEEEECCCCcchh--hc--cCccEEeCCHhHcC
Confidence 99999999999999 9999999999999864332 22 46889999999875
No 24
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=99.92 E-value=3.8e-25 Score=182.94 Aligned_cols=126 Identities=17% Similarity=0.174 Sum_probs=105.9
Q ss_pred hccCCCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecCC----CChHHHHHHHHhcCCCCCC
Q 024415 135 IGANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGT----GPKVEVLKQLQKKPELQGM 207 (268)
Q Consensus 135 ~~~~~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~~----~pk~~~~~~~~~~~~~~~~ 207 (268)
....++.||+.++| +++|++++++||+++..++..+.. +|+.++|+.++++++ ||+|+++....+++|+.|+
T Consensus 82 ~~~~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~-~gl~~~f~~~v~~~dv~~~KP~Pd~yL~Aa~~Lgv~P~ 160 (221)
T COG0637 82 LEGLKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLAR-LGLLDYFDVIVTADDVARGKPAPDIYLLAAERLGVDPE 160 (221)
T ss_pred hcCCCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHH-ccChhhcchhccHHHHhcCCCCCHHHHHHHHHcCCChH
Confidence 45678999999999 688899999999999999999999 899999999988764 5999999999999999999
Q ss_pred cEEEEecCccchhcccccccccCCeEEEeecCCCCH--HHHHhhcCCCCEEEcCHhHHHhhc
Q 024415 208 TLHFVEDRLATLKNVIKEPELDGWNLYLGDWGYNTQ--KEREEAASIPRIQLLQLSDFSRKL 267 (268)
Q Consensus 208 ~~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~~~--~~~~~~~~~p~~~~~~~~~l~~~l 267 (268)
+||.|+||.+++++ |++|||.+|++..++... ..+.. ...+....++.++..++
T Consensus 161 ~CvviEDs~~Gi~A----a~aAGm~vv~v~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~ 216 (221)
T COG0637 161 ECVVVEDSPAGIQA----AKAAGMRVVGVPAGHDRPHLDPLDA--HGADTVLLDLAELPALL 216 (221)
T ss_pred HeEEEecchhHHHH----HHHCCCEEEEecCCCCccccchhhh--hhcchhhccHHHHHHHH
Confidence 99999999999999 999999999998754421 22222 23456677777776543
No 25
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=99.92 E-value=4.7e-24 Score=176.95 Aligned_cols=102 Identities=13% Similarity=0.067 Sum_probs=92.0
Q ss_pred ccCCCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecCC----CChHHHHHHHHhcCCCCCCc
Q 024415 136 GANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGT----GPKVEVLKQLQKKPELQGMT 208 (268)
Q Consensus 136 ~~~~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~~----~pk~~~~~~~~~~~~~~~~~ 208 (268)
....++||+.++| +++|++++|+||+++..+...++. +|+..+|+.+++++. ||+|+++..++++++++|++
T Consensus 90 ~~~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~-~~l~~~fd~iv~s~~~~~~KP~p~~~~~~~~~~~~~p~~ 168 (224)
T PRK14988 90 PRAVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEH-TGLDAHLDLLLSTHTFGYPKEDQRLWQAVAEHTGLKAER 168 (224)
T ss_pred ccCCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHH-CCcHHHCCEEEEeeeCCCCCCCHHHHHHHHHHcCCChHH
Confidence 4468999999999 688999999999999999999999 899999999998764 59999999999999999999
Q ss_pred EEEEecCccchhcccccccccCCe-EEEeecCCCC
Q 024415 209 LHFVEDRLATLKNVIKEPELDGWN-LYLGDWGYNT 242 (268)
Q Consensus 209 ~l~IGDs~~Di~~~~~~A~~aG~~-~v~v~~g~~~ 242 (268)
|+||||+..|+++ |+++||. +++|.++...
T Consensus 169 ~l~igDs~~di~a----A~~aG~~~~~~v~~~~~~ 199 (224)
T PRK14988 169 TLFIDDSEPILDA----AAQFGIRYCLGVTNPDSG 199 (224)
T ss_pred EEEEcCCHHHHHH----HHHcCCeEEEEEeCCCCC
Confidence 9999999999999 9999997 5678777543
No 26
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=99.91 E-value=2.3e-23 Score=169.67 Aligned_cols=98 Identities=17% Similarity=0.196 Sum_probs=91.3
Q ss_pred cCCCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecCC----CChHHHHHHHHhcCCCCCCcE
Q 024415 137 ANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGT----GPKVEVLKQLQKKPELQGMTL 209 (268)
Q Consensus 137 ~~~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~~----~pk~~~~~~~~~~~~~~~~~~ 209 (268)
..+++||+.++| +++|++++|+||++...+...++. +|+..+|+.+++++. ||+|++++.+..+.++.|+++
T Consensus 90 ~~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~-~gl~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~p~~~ 168 (198)
T TIGR01428 90 RLPPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKH-AGLDDPFDAVLSADAVRAYKPAPQVYQLALEALGVPPDEV 168 (198)
T ss_pred cCCCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHH-CCChhhhheeEehhhcCCCCCCHHHHHHHHHHhCCChhhE
Confidence 457899999999 688999999999999999999999 899999999998864 599999999999999999999
Q ss_pred EEEecCccchhcccccccccCCeEEEeecC
Q 024415 210 HFVEDRLATLKNVIKEPELDGWNLYLGDWG 239 (268)
Q Consensus 210 l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g 239 (268)
+||||+..|+.+ |+++|+.+|+++++
T Consensus 169 ~~vgD~~~Di~~----A~~~G~~~i~v~r~ 194 (198)
T TIGR01428 169 LFVASNPWDLGG----AKKFGFKTAWVNRP 194 (198)
T ss_pred EEEeCCHHHHHH----HHHCCCcEEEecCC
Confidence 999999999999 99999999999875
No 27
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=99.91 E-value=4.2e-23 Score=177.13 Aligned_cols=117 Identities=13% Similarity=0.129 Sum_probs=98.8
Q ss_pred CCCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCC---CCCCeEEecCC----CChHHHHHHHHhcCCCCCC
Q 024415 138 NRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVT---IPPDRIYGLGT----GPKVEVLKQLQKKPELQGM 207 (268)
Q Consensus 138 ~~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~---~~f~~i~~~~~----~pk~~~~~~~~~~~~~~~~ 207 (268)
.+++||+.++| +++|++++|+||++...+...++. .+.. .+|+.+ +++. ||+|+++..+..+++++|+
T Consensus 143 ~~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~-~~~~~~~~~~~~v-~~~~~~~~KP~p~~~~~a~~~~~~~p~ 220 (286)
T PLN02779 143 LPLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNT-LLGPERAQGLDVF-AGDDVPKKKPDPDIYNLAAETLGVDPS 220 (286)
T ss_pred CCchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHH-hccccccCceEEE-eccccCCCCCCHHHHHHHHHHhCcChH
Confidence 57999999999 688999999999999999999887 4332 334444 4442 5999999999999999999
Q ss_pred cEEEEecCccchhcccccccccCCeEEEeecCCCCHHHHHhhcCCCCEEEcCHhHHH
Q 024415 208 TLHFVEDRLATLKNVIKEPELDGWNLYLGDWGYNTQKEREEAASIPRIQLLQLSDFS 264 (268)
Q Consensus 208 ~~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~~~~p~~~~~~~~~l~ 264 (268)
+|+||||+..|+++ |+++|+.+|++.+|++..+.+ ..|++.+.++.++.
T Consensus 221 ~~l~IGDs~~Di~a----A~~aG~~~i~v~~g~~~~~~l----~~ad~vi~~~~~l~ 269 (286)
T PLN02779 221 RCVVVEDSVIGLQA----AKAAGMRCIVTKSSYTADEDF----SGADAVFDCLGDVP 269 (286)
T ss_pred HEEEEeCCHHhHHH----HHHcCCEEEEEccCCcccccc----CCCcEEECChhhcc
Confidence 99999999999999 999999999999998765554 25889999998864
No 28
>PHA02597 30.2 hypothetical protein; Provisional
Probab=99.91 E-value=4.1e-24 Score=174.03 Aligned_cols=117 Identities=15% Similarity=0.086 Sum_probs=93.3
Q ss_pred hccCCCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCC----CCCeEEecCC-CChHHHHHHHHhcCCCCC
Q 024415 135 IGANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTI----PPDRIYGLGT-GPKVEVLKQLQKKPELQG 206 (268)
Q Consensus 135 ~~~~~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~----~f~~i~~~~~-~pk~~~~~~~~~~~~~~~ 206 (268)
....+++||+.++| ++. ++++++||++.......++. +++.. +|+.+++++. +|||+++..+.++++ |
T Consensus 70 ~~~~~~~pG~~e~L~~L~~~-~~~~i~Tn~~~~~~~~~~~~-~~l~~~f~~~f~~i~~~~~~~~kp~~~~~a~~~~~--~ 145 (197)
T PHA02597 70 IRYLSAYDDALDVINKLKED-YDFVAVTALGDSIDALLNRQ-FNLNALFPGAFSEVLMCGHDESKEKLFIKAKEKYG--D 145 (197)
T ss_pred HHhccCCCCHHHHHHHHHhc-CCEEEEeCCccchhHHHHhh-CCHHHhCCCcccEEEEeccCcccHHHHHHHHHHhC--C
Confidence 44567999999999 454 57888899877666666666 67654 4567777665 599999999999998 8
Q ss_pred CcEEEEecCccchhccccccccc--CCeEEEeecCCCCHHHHHhhcCCCCEEEcCHhHHHh
Q 024415 207 MTLHFVEDRLATLKNVIKEPELD--GWNLYLGDWGYNTQKEREEAASIPRIQLLQLSDFSR 265 (268)
Q Consensus 207 ~~~l~IGDs~~Di~~~~~~A~~a--G~~~v~v~~g~~~~~~~~~~~~~p~~~~~~~~~l~~ 265 (268)
++++||||+..|+++ |+++ ||.+|+++||+. .....|++.++|+.|+.+
T Consensus 146 ~~~v~vgDs~~di~a----A~~a~~Gi~~i~~~~~~~------~~~~~~~~~~~~~~~~~~ 196 (197)
T PHA02597 146 RVVCFVDDLAHNLDA----AHEALSQLPVIHMLRGER------DHIPKLAHRVKSWNDIEN 196 (197)
T ss_pred CcEEEeCCCHHHHHH----HHHHHcCCcEEEecchhh------ccccchhhhhccHHHHhc
Confidence 889999999999999 9999 999999999853 222356789999998864
No 29
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=99.90 E-value=9.7e-24 Score=169.88 Aligned_cols=93 Identities=20% Similarity=0.172 Sum_probs=85.0
Q ss_pred cCCCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecCC----CChHHHHHHHHhcCCCCCCcE
Q 024415 137 ANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGT----GPKVEVLKQLQKKPELQGMTL 209 (268)
Q Consensus 137 ~~~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~~----~pk~~~~~~~~~~~~~~~~~~ 209 (268)
..+++||+.++| +++|++++++||+ ..++..++. +|+..+|+.+++++. +|+|++++++.++++.+|+++
T Consensus 86 ~~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l~~-~~l~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 162 (185)
T TIGR02009 86 GAEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRILAK-LGLTDYFDAIVDADEVKEGKPHPETFLLAAELLGVSPNEC 162 (185)
T ss_pred CCCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHHHH-cChHHHCCEeeehhhCCCCCCChHHHHHHHHHcCCCHHHe
Confidence 468999999999 6889999999998 567889999 899999999998864 489999999999999999999
Q ss_pred EEEecCccchhcccccccccCCeEEEe
Q 024415 210 HFVEDRLATLKNVIKEPELDGWNLYLG 236 (268)
Q Consensus 210 l~IGDs~~Di~~~~~~A~~aG~~~v~v 236 (268)
+||||+..|+++ |+++|+.+|+|
T Consensus 163 v~IgD~~~di~a----A~~~G~~~i~v 185 (185)
T TIGR02009 163 VVFEDALAGVQA----ARAAGMFAVAV 185 (185)
T ss_pred EEEeCcHhhHHH----HHHCCCeEeeC
Confidence 999999999999 99999999875
No 30
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.90 E-value=6.1e-23 Score=170.65 Aligned_cols=123 Identities=19% Similarity=0.184 Sum_probs=106.0
Q ss_pred cCCCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecCC----CChHHHHHHHHhcCCCCCCcE
Q 024415 137 ANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGT----GPKVEVLKQLQKKPELQGMTL 209 (268)
Q Consensus 137 ~~~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~~----~pk~~~~~~~~~~~~~~~~~~ 209 (268)
..+++|++.++| +++ ++++++||+....+...++. +|+.++||.|+.++. ||+|+++++++++.++.|+++
T Consensus 97 ~~~~~~~~~~~L~~l~~~-~~l~ilTNg~~~~~~~~l~~-~gl~~~Fd~v~~s~~~g~~KP~~~~f~~~~~~~g~~p~~~ 174 (229)
T COG1011 97 LLPDYPEALEALKELGKK-YKLGILTNGARPHQERKLRQ-LGLLDYFDAVFISEDVGVAKPDPEIFEYALEKLGVPPEEA 174 (229)
T ss_pred hCccChhHHHHHHHHHhh-ccEEEEeCCChHHHHHHHHH-cCChhhhheEEEecccccCCCCcHHHHHHHHHcCCCcceE
Confidence 468999999999 344 88999999999999999999 899999999998875 599999999999999999999
Q ss_pred EEEecCc-cchhcccccccccCCeEEEeecCCCCHHHHHhhcCCCCEEEcCHhHHHhhcC
Q 024415 210 HFVEDRL-ATLKNVIKEPELDGWNLYLGDWGYNTQKEREEAASIPRIQLLQLSDFSRKLK 268 (268)
Q Consensus 210 l~IGDs~-~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~~~~p~~~~~~~~~l~~~l~ 268 (268)
+||||+. +|+.+ |+++||.+||+..+.... ......|++.+.++.++.++++
T Consensus 175 l~VgD~~~~di~g----A~~~G~~~vwi~~~~~~~---~~~~~~~~~~i~~l~~l~~~~~ 227 (229)
T COG1011 175 LFVGDSLENDILG----ARALGMKTVWINRGGKPL---PDALEAPDYEISSLAELLDLLE 227 (229)
T ss_pred EEECCChhhhhHH----HHhcCcEEEEECCCCCCC---CCCccCCceEEcCHHHHHHHHh
Confidence 9999996 67799 999999999998774332 2222469999999999988763
No 31
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=99.90 E-value=7.6e-24 Score=170.52 Aligned_cols=94 Identities=18% Similarity=0.162 Sum_probs=84.1
Q ss_pred cCCCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecCC----CChHHHHHHHHhcCCCCCCcE
Q 024415 137 ANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGT----GPKVEVLKQLQKKPELQGMTL 209 (268)
Q Consensus 137 ~~~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~~----~pk~~~~~~~~~~~~~~~~~~ 209 (268)
...++||+.++| +++|++++|+||+.. ....++. +|+..+|+.+++++. +|+|++++.++++.++.|+++
T Consensus 85 ~~~~~pg~~~~L~~L~~~g~~~~i~s~~~~--~~~~l~~-~~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~ 161 (185)
T TIGR01990 85 PADVLPGIKNLLDDLKKNNIKIALASASKN--APTVLEK-LGLIDYFDAIVDPAEIKKGKPDPEIFLAAAEGLGVSPSEC 161 (185)
T ss_pred CcccCccHHHHHHHHHHCCCeEEEEeCCcc--HHHHHHh-cCcHhhCcEEEehhhcCCCCCChHHHHHHHHHcCCCHHHe
Confidence 347899999999 688999999998753 4568899 899999999998764 599999999999999999999
Q ss_pred EEEecCccchhcccccccccCCeEEEee
Q 024415 210 HFVEDRLATLKNVIKEPELDGWNLYLGD 237 (268)
Q Consensus 210 l~IGDs~~Di~~~~~~A~~aG~~~v~v~ 237 (268)
+||||+..|+++ |+++|+.+|+|.
T Consensus 162 v~vgD~~~di~a----A~~aG~~~i~v~ 185 (185)
T TIGR01990 162 IGIEDAQAGIEA----IKAAGMFAVGVG 185 (185)
T ss_pred EEEecCHHHHHH----HHHcCCEEEecC
Confidence 999999999999 999999999873
No 32
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=99.90 E-value=9.4e-24 Score=170.51 Aligned_cols=96 Identities=15% Similarity=0.097 Sum_probs=85.3
Q ss_pred ccCCCCCChHHHH-H-cCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecCC----CChHHHHHHHHhcCCCCCCcE
Q 024415 136 GANRFYPGIPDAL-K-FASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGT----GPKVEVLKQLQKKPELQGMTL 209 (268)
Q Consensus 136 ~~~~~~pg~~e~L-~-~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~~----~pk~~~~~~~~~~~~~~~~~~ 209 (268)
...+++|| .++| . +.+++++|+||++...++..+++ +|+..+|+.|++++. ||+|+++.++.++++..|++|
T Consensus 85 ~~~~~~~~-~e~L~~L~~~~~l~I~T~~~~~~~~~~l~~-~~l~~~fd~i~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~ 162 (188)
T PRK10725 85 DSVEPLPL-IEVVKAWHGRRPMAVGTGSESAIAEALLAH-LGLRRYFDAVVAADDVQHHKPAPDTFLRCAQLMGVQPTQC 162 (188)
T ss_pred ccCCCccH-HHHHHHHHhCCCEEEEcCCchHHHHHHHHh-CCcHhHceEEEehhhccCCCCChHHHHHHHHHcCCCHHHe
Confidence 34567886 4777 2 34589999999999999999999 899999999999864 599999999999999999999
Q ss_pred EEEecCccchhcccccccccCCeEEEee
Q 024415 210 HFVEDRLATLKNVIKEPELDGWNLYLGD 237 (268)
Q Consensus 210 l~IGDs~~Di~~~~~~A~~aG~~~v~v~ 237 (268)
+||||+..|+++ |+++|+.+|++.
T Consensus 163 l~igDs~~di~a----A~~aG~~~i~~~ 186 (188)
T PRK10725 163 VVFEDADFGIQA----ARAAGMDAVDVR 186 (188)
T ss_pred EEEeccHhhHHH----HHHCCCEEEeec
Confidence 999999999999 999999999874
No 33
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=99.89 E-value=2.8e-23 Score=169.84 Aligned_cols=92 Identities=16% Similarity=0.240 Sum_probs=83.0
Q ss_pred CCCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecCC----CChHHHHHHHHhcCCCCCCcEE
Q 024415 138 NRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGT----GPKVEVLKQLQKKPELQGMTLH 210 (268)
Q Consensus 138 ~~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~~----~pk~~~~~~~~~~~~~~~~~~l 210 (268)
..++||+.++| +++|++++|+||++.. ....++. +|+..+|+.|++++. ||+|+++.+++++++++|++++
T Consensus 104 ~~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~-~~~~l~~-~~l~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~~~~~~ 181 (203)
T TIGR02252 104 WQVYPDAIKLLKDLRERGLILGVISNFDSR-LRGLLEA-LGLLEYFDFVVTSYEVGAEKPDPKIFQEALERAGISPEEAL 181 (203)
T ss_pred ceeCcCHHHHHHHHHHCCCEEEEEeCCchh-HHHHHHH-CCcHHhcceEEeecccCCCCCCHHHHHHHHHHcCCChhHEE
Confidence 47899999999 6789999999998875 4778898 799999999998764 5999999999999999999999
Q ss_pred EEecCc-cchhcccccccccCCeEEE
Q 024415 211 FVEDRL-ATLKNVIKEPELDGWNLYL 235 (268)
Q Consensus 211 ~IGDs~-~Di~~~~~~A~~aG~~~v~ 235 (268)
||||+. .|+++ |+++|+.+||
T Consensus 182 ~IgD~~~~Di~~----A~~aG~~~i~ 203 (203)
T TIGR02252 182 HIGDSLRNDYQG----ARAAGWRALL 203 (203)
T ss_pred EECCCchHHHHH----HHHcCCeeeC
Confidence 999997 89999 9999999875
No 34
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.89 E-value=7.4e-23 Score=201.57 Aligned_cols=117 Identities=15% Similarity=0.170 Sum_probs=106.5
Q ss_pred CCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCC-CCCCeEEecCC----CChHHHHHHHHhcCCCCCCcEE
Q 024415 139 RFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVT-IPPDRIYGLGT----GPKVEVLKQLQKKPELQGMTLH 210 (268)
Q Consensus 139 ~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~-~~f~~i~~~~~----~pk~~~~~~~~~~~~~~~~~~l 210 (268)
.++||+.++| +++|++++|+||+....++..+++ +|+. .+|+.+++++. ||+|+++..+.+++++.|++|+
T Consensus 161 ~~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~-~gl~~~~Fd~iv~~~~~~~~KP~Pe~~~~a~~~lgv~p~e~v 239 (1057)
T PLN02919 161 IGFPGALELITQCKNKGLKVAVASSADRIKVDANLAA-AGLPLSMFDAIVSADAFENLKPAPDIFLAAAKILGVPTSECV 239 (1057)
T ss_pred ccCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHH-cCCChhHCCEEEECcccccCCCCHHHHHHHHHHcCcCcccEE
Confidence 4799999999 689999999999999999999999 8996 78999999874 5999999999999999999999
Q ss_pred EEecCccchhcccccccccCCeEEEeecCCCCHHHHHhhcCCCCEEEcCHhHH
Q 024415 211 FVEDRLATLKNVIKEPELDGWNLYLGDWGYNTQKEREEAASIPRIQLLQLSDF 263 (268)
Q Consensus 211 ~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~~~~p~~~~~~~~~l 263 (268)
||||+..|+++ |+++||.+|++.+++ ..+++.. ..|++.+.++.++
T Consensus 240 ~IgDs~~Di~A----A~~aGm~~I~v~~~~-~~~~L~~--~~a~~vi~~l~el 285 (1057)
T PLN02919 240 VIEDALAGVQA----ARAAGMRCIAVTTTL-SEEILKD--AGPSLIRKDIGNI 285 (1057)
T ss_pred EEcCCHHHHHH----HHHcCCEEEEECCCC-CHHHHhh--CCCCEEECChHHC
Confidence 99999999999 999999999999986 5566665 5688999999985
No 35
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=99.89 E-value=1.5e-22 Score=163.06 Aligned_cols=95 Identities=17% Similarity=0.171 Sum_probs=86.6
Q ss_pred cCCCCCChHHHHHcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecCC--------CChHHHHHHHHhcCCCCCCc
Q 024415 137 ANRFYPGIPDALKFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGT--------GPKVEVLKQLQKKPELQGMT 208 (268)
Q Consensus 137 ~~~~~pg~~e~L~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~~--------~pk~~~~~~~~~~~~~~~~~ 208 (268)
..+++||+.++|+...++++|+||++...+...++. +|+..+|+.|++++. ||+|+++..+.++.+..|++
T Consensus 82 ~~~~~~g~~~~L~~L~~~~~i~Tn~~~~~~~~~l~~-~gl~~~fd~i~~~~~~~~~~~~~KP~p~~~~~~~~~~~~~~~~ 160 (184)
T TIGR01993 82 KLKPDPELRNLLLRLPGRKIIFTNGDRAHARRALNR-LGIEDCFDGIFCFDTANPDYLLPKPSPQAYEKALREAGVDPER 160 (184)
T ss_pred hCCCCHHHHHHHHhCCCCEEEEeCCCHHHHHHHHHH-cCcHhhhCeEEEeecccCccCCCCCCHHHHHHHHHHhCCCccc
Confidence 456899999999655579999999999999999999 899999999998752 68999999999999999999
Q ss_pred EEEEecCccchhcccccccccCCeEEEe
Q 024415 209 LHFVEDRLATLKNVIKEPELDGWNLYLG 236 (268)
Q Consensus 209 ~l~IGDs~~Di~~~~~~A~~aG~~~v~v 236 (268)
++||||+..|+++ |+++|+.+|+|
T Consensus 161 ~l~vgD~~~di~a----A~~~G~~~i~v 184 (184)
T TIGR01993 161 AIFFDDSARNIAA----AKALGMKTVLV 184 (184)
T ss_pred eEEEeCCHHHHHH----HHHcCCEEeeC
Confidence 9999999999999 99999999875
No 36
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=99.87 E-value=1.2e-21 Score=155.44 Aligned_cols=97 Identities=18% Similarity=0.216 Sum_probs=89.9
Q ss_pred hccCCCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecCC----CChHHHHHHHHhcCCCCCC
Q 024415 135 IGANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGT----GPKVEVLKQLQKKPELQGM 207 (268)
Q Consensus 135 ~~~~~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~~----~pk~~~~~~~~~~~~~~~~ 207 (268)
....+++||+.++| +++|++++++||++...+...++. +|+..+|+.+++++. ||++++++.+.++++++|+
T Consensus 73 ~~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~-~~~~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~~~~~p~ 151 (176)
T PF13419_consen 73 ESKLQPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLER-LGLDDYFDEIISSDDVGSRKPDPDAYRRALEKLGIPPE 151 (176)
T ss_dssp HGGEEESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHH-TTHGGGCSEEEEGGGSSSSTTSHHHHHHHHHHHTSSGG
T ss_pred hhccchhhhhhhhhhhcccccceeEEeecCCcccccccccc-cccccccccccccchhhhhhhHHHHHHHHHHHcCCCcc
Confidence 35668999999999 579999999999999999999999 799999999998863 4899999999999999999
Q ss_pred cEEEEecCccchhcccccccccCCeEEEe
Q 024415 208 TLHFVEDRLATLKNVIKEPELDGWNLYLG 236 (268)
Q Consensus 208 ~~l~IGDs~~Di~~~~~~A~~aG~~~v~v 236 (268)
+++||||+..|+++ |+++||.+|+|
T Consensus 152 ~~~~vgD~~~d~~~----A~~~G~~~i~v 176 (176)
T PF13419_consen 152 EILFVGDSPSDVEA----AKEAGIKTIWV 176 (176)
T ss_dssp GEEEEESSHHHHHH----HHHTTSEEEEE
T ss_pred eEEEEeCCHHHHHH----HHHcCCeEEeC
Confidence 99999999999999 99999999986
No 37
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=99.87 E-value=7.7e-23 Score=168.26 Aligned_cols=107 Identities=12% Similarity=0.078 Sum_probs=88.3
Q ss_pred ccCCCCCChHHHH---HcCCCeEEEEcCCCHHH--HHHHHHHhcCCCCCCCeEEecCC----CChHHHHHHHHhcCCCCC
Q 024415 136 GANRFYPGIPDAL---KFASSRIYIVTTKQSRF--ADALLRELAGVTIPPDRIYGLGT----GPKVEVLKQLQKKPELQG 206 (268)
Q Consensus 136 ~~~~~~pg~~e~L---~~~g~~i~ivTn~~~~~--~~~~l~~~~gl~~~f~~i~~~~~----~pk~~~~~~~~~~~~~~~ 206 (268)
...+++||+.++| +++|++++|+||+.... ....+.. .++..+|+.+++++. ||+|+++..++.+.+++|
T Consensus 91 ~~~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~-~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~~g~~~ 169 (211)
T TIGR02247 91 ENTKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLP-GDIMALFDAVVESCLEGLRKPDPRIYQLMLERLGVAP 169 (211)
T ss_pred cccccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhh-hhhHhhCCEEEEeeecCCCCCCHHHHHHHHHHcCCCH
Confidence 3467899999999 68899999999986543 3333445 578889999988753 699999999999999999
Q ss_pred CcEEEEecCccchhcccccccccCCeEEEeecCCCCHHHHH
Q 024415 207 MTLHFVEDRLATLKNVIKEPELDGWNLYLGDWGYNTQKERE 247 (268)
Q Consensus 207 ~~~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~ 247 (268)
++|+||||+..|+.+ |+++|+.+|++.++.....++.
T Consensus 170 ~~~l~i~D~~~di~a----A~~aG~~~i~v~~~~~~~~~l~ 206 (211)
T TIGR02247 170 EECVFLDDLGSNLKP----AAALGITTIKVSDEEQAIHDLE 206 (211)
T ss_pred HHeEEEcCCHHHHHH----HHHcCCEEEEECCHHHHHHHHH
Confidence 999999999999999 9999999999987644444443
No 38
>PLN02811 hydrolase
Probab=99.86 E-value=4.4e-22 Score=164.82 Aligned_cols=120 Identities=13% Similarity=0.086 Sum_probs=99.8
Q ss_pred cCCCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecC--C----CChHHHHHHHHhcCC---C
Q 024415 137 ANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLG--T----GPKVEVLKQLQKKPE---L 204 (268)
Q Consensus 137 ~~~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~--~----~pk~~~~~~~~~~~~---~ 204 (268)
..+++||+.++| +++|++++|+||+........+....++..+|+.+++++ . ||+|+++..+.++++ +
T Consensus 76 ~~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~~~f~~i~~~~~~~~~~~KP~p~~~~~a~~~~~~~~~ 155 (220)
T PLN02811 76 TSDLMPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELFSLMHHVVTGDDPEVKQGKPAPDIFLAAARRFEDGPV 155 (220)
T ss_pred hCCCCccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHHHHhhCCEEEECChhhccCCCCCcHHHHHHHHHhCCCCC
Confidence 457899999999 689999999999987655543333147788999999888 3 599999999999886 9
Q ss_pred CCCcEEEEecCccchhcccccccccCCeEEEeecCCCCHHHHHhhcCCCCEEEcCHhHHH
Q 024415 205 QGMTLHFVEDRLATLKNVIKEPELDGWNLYLGDWGYNTQKEREEAASIPRIQLLQLSDFS 264 (268)
Q Consensus 205 ~~~~~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~~~~p~~~~~~~~~l~ 264 (268)
+|++|+||||+..|+++ |+++|+.+|++.+++.....+ ..|++++.++.++.
T Consensus 156 ~~~~~v~IgDs~~di~a----A~~aG~~~i~v~~~~~~~~~~----~~~d~vi~~~~e~~ 207 (220)
T PLN02811 156 DPGKVLVFEDAPSGVEA----AKNAGMSVVMVPDPRLDKSYC----KGADQVLSSLLDFK 207 (220)
T ss_pred CccceEEEeccHhhHHH----HHHCCCeEEEEeCCCCcHhhh----hchhhHhcCHhhCC
Confidence 99999999999999999 999999999999987554333 25888999998764
No 39
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=99.85 E-value=1.2e-20 Score=153.80 Aligned_cols=105 Identities=11% Similarity=0.150 Sum_probs=90.7
Q ss_pred CCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecCC----CChHHHHHHHHhcCCCCCCcEEE
Q 024415 139 RFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGT----GPKVEVLKQLQKKPELQGMTLHF 211 (268)
Q Consensus 139 ~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~~----~pk~~~~~~~~~~~~~~~~~~l~ 211 (268)
+++||+.++| +++|++++|+||++.......+....++..+|+.+++++. ||+|++++.+.++.+++|++|+|
T Consensus 84 ~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~~~~~p~~~l~ 163 (199)
T PRK09456 84 ALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEVRAAADHIYLSQDLGMRKPEARIYQHVLQAEGFSAADAVF 163 (199)
T ss_pred ccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhchhHHHhcCEEEEecccCCCCCCHHHHHHHHHHcCCChhHeEE
Confidence 5899999999 6899999999999988777666552478889999998864 59999999999999999999999
Q ss_pred EecCccchhcccccccccCCeEEEeecCCCCHHHHH
Q 024415 212 VEDRLATLKNVIKEPELDGWNLYLGDWGYNTQKERE 247 (268)
Q Consensus 212 IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~ 247 (268)
|||+..|+.+ |+++|+.++++.++....+.++
T Consensus 164 vgD~~~di~a----A~~aG~~~i~~~~~~~~~~~l~ 195 (199)
T PRK09456 164 FDDNADNIEA----ANALGITSILVTDKQTIPDYFA 195 (199)
T ss_pred eCCCHHHHHH----HHHcCCEEEEecCCccHHHHHH
Confidence 9999999999 9999999999988755444443
No 40
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=99.85 E-value=1.5e-20 Score=150.73 Aligned_cols=93 Identities=20% Similarity=0.249 Sum_probs=84.6
Q ss_pred CCCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecCC----CChHHHHHHHHhcCCCCCCcEE
Q 024415 138 NRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGT----GPKVEVLKQLQKKPELQGMTLH 210 (268)
Q Consensus 138 ~~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~~----~pk~~~~~~~~~~~~~~~~~~l 210 (268)
.+++||+.++| +++|++++|+||++... ...+.+ +|+..+|+.+++++. ||+|++++.+.++.+++|++|+
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~~-~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~ 161 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLVQE-LGLRDLFDVVIFSGDVGRGKPDPDIYLLALKKLGLKPEECL 161 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHh-cCCHHHCCEEEEcCCCCCCCCCHHHHHHHHHHcCCCcceEE
Confidence 68999999999 58899999999999988 777777 799999999988653 5999999999999999999999
Q ss_pred EEecCccchhcccccccccCCeEEEe
Q 024415 211 FVEDRLATLKNVIKEPELDGWNLYLG 236 (268)
Q Consensus 211 ~IGDs~~Di~~~~~~A~~aG~~~v~v 236 (268)
||||+..|+.+ |+++|+.+|+|
T Consensus 162 ~vgD~~~di~a----A~~~G~~~i~v 183 (183)
T TIGR01509 162 FVDDSPAGIEA----AKAAGMHTVLV 183 (183)
T ss_pred EEcCCHHHHHH----HHHcCCEEEeC
Confidence 99999999999 99999999875
No 41
>PLN02954 phosphoserine phosphatase
Probab=99.84 E-value=2.1e-19 Score=149.11 Aligned_cols=121 Identities=20% Similarity=0.355 Sum_probs=93.3
Q ss_pred CCCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCC--CCCCe---------EEecC-------CCChHHHHH
Q 024415 138 NRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVT--IPPDR---------IYGLG-------TGPKVEVLK 196 (268)
Q Consensus 138 ~~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~--~~f~~---------i~~~~-------~~pk~~~~~ 196 (268)
.+++||+.++| +++|++++|+|++....++..++. +|+. .+|+. +.+.+ .+|||++++
T Consensus 83 ~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~-~gi~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~i~ 161 (224)
T PLN02954 83 PRLSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAI-LGIPPENIFANQILFGDSGEYAGFDENEPTSRSGGKAEAVQ 161 (224)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHH-hCCChhhEEEeEEEEcCCCcEECccCCCcccCCccHHHHHH
Confidence 46899999999 689999999999999999999999 7996 34532 11111 137999999
Q ss_pred HHHhcCCCCCCcEEEEecCccchhcccccccccCCeEEEeecCCCCHHHHHhhcCCCCEEEcCHhHHHhhcC
Q 024415 197 QLQKKPELQGMTLHFVEDRLATLKNVIKEPELDGWNLYLGDWGYNTQKEREEAASIPRIQLLQLSDFSRKLK 268 (268)
Q Consensus 197 ~~~~~~~~~~~~~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~~~~p~~~~~~~~~l~~~l~ 268 (268)
.+..+.+. ++++||||+.+|+.+ |+++|+.++.. +|......... ..|++.+.++.+|.+++.
T Consensus 162 ~~~~~~~~--~~~i~iGDs~~Di~a----a~~~~~~~~~~-~~~~~~~~~~~--~~~~~~i~~~~el~~~~~ 224 (224)
T PLN02954 162 HIKKKHGY--KTMVMIGDGATDLEA----RKPGGADLFIG-YGGVQVREAVA--AKADWFVTDFQDLIEVLD 224 (224)
T ss_pred HHHHHcCC--CceEEEeCCHHHHHh----hhcCCCCEEEe-cCCCccCHHHH--hcCCEEECCHHHHHHhhC
Confidence 99888764 589999999999999 99999876644 44332223222 368899999999988763
No 42
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=99.84 E-value=1.4e-19 Score=149.64 Aligned_cols=118 Identities=15% Similarity=0.099 Sum_probs=93.7
Q ss_pred cCCCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEE-------ec----CC---CChHHHHHHHH
Q 024415 137 ANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIY-------GL----GT---GPKVEVLKQLQ 199 (268)
Q Consensus 137 ~~~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~-------~~----~~---~pk~~~~~~~~ 199 (268)
..+++||+.++| +++|++++|+||+....+...++. +|+..+|+..+ ++ .. +|||.+++.+.
T Consensus 83 ~~~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 161 (219)
T TIGR00338 83 NLPLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDK-LGLDAAFANRLEVEDGKLTGLVEGPIVDASYKGKTLLILL 161 (219)
T ss_pred cCCcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHH-cCCCceEeeEEEEECCEEEEEecCcccCCcccHHHHHHHH
Confidence 356899999999 688999999999999999999999 79988875321 11 11 26999999999
Q ss_pred hcCCCCCCcEEEEecCccchhcccccccccCCeEEEeecCCCCHHHHHhhcCCCCEEEc--CHhHHHhhc
Q 024415 200 KKPELQGMTLHFVEDRLATLKNVIKEPELDGWNLYLGDWGYNTQKEREEAASIPRIQLL--QLSDFSRKL 267 (268)
Q Consensus 200 ~~~~~~~~~~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~~~~p~~~~~--~~~~l~~~l 267 (268)
++.+++|++|+||||+.+|+.+ |+++|+..+ + ++...+.+ .+++.+. ++.++.++|
T Consensus 162 ~~~~~~~~~~i~iGDs~~Di~a----a~~ag~~i~-~----~~~~~~~~---~a~~~i~~~~~~~~~~~~ 219 (219)
T TIGR00338 162 RKEGISPENTVAVGDGANDLSM----IKAAGLGIA-F----NAKPKLQQ---KADICINKKDLTDILPLL 219 (219)
T ss_pred HHcCCCHHHEEEEECCHHHHHH----HHhCCCeEE-e----CCCHHHHH---hchhccCCCCHHHHHhhC
Confidence 9999999999999999999999 999999643 3 23344544 3567766 668877765
No 43
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=99.83 E-value=7.3e-20 Score=147.02 Aligned_cols=119 Identities=24% Similarity=0.233 Sum_probs=96.2
Q ss_pred CCCCChHHHH---HcCCCeEEEEcCCCH---------------HHHHHHHHHhcCCCCCCCeEEec-----C----CCCh
Q 024415 139 RFYPGIPDAL---KFASSRIYIVTTKQS---------------RFADALLRELAGVTIPPDRIYGL-----G----TGPK 191 (268)
Q Consensus 139 ~~~pg~~e~L---~~~g~~i~ivTn~~~---------------~~~~~~l~~~~gl~~~f~~i~~~-----~----~~pk 191 (268)
.++||+.++| +++|++++|+||++. ..+...++. +|+ .|+.++.+ + .||+
T Consensus 29 ~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~--~f~~i~~~~~~~~~~~~~~KP~ 105 (181)
T PRK08942 29 IPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLNALHEKMDWSLAD-RGG--RLDGIYYCPHHPEDGCDCRKPK 105 (181)
T ss_pred EECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHH-cCC--ccceEEECCCCCCCCCcCCCCC
Confidence 3789999999 688999999999863 334456666 576 47776642 1 2599
Q ss_pred HHHHHHHHhcCCCCCCcEEEEecCccchhcccccccccCCeEEEeecCCCCHHHHHhhcCCC--CEEEcCHhHHHhhc
Q 024415 192 VEVLKQLQKKPELQGMTLHFVEDRLATLKNVIKEPELDGWNLYLGDWGYNTQKEREEAASIP--RIQLLQLSDFSRKL 267 (268)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~~~~p--~~~~~~~~~l~~~l 267 (268)
|+++..+.++++..|++++||||+..|+.+ |+++|+.++++.+|+... .... ..| ++++.++.++.++|
T Consensus 106 p~~~~~~~~~l~~~~~~~~~VgDs~~Di~~----A~~aG~~~i~v~~g~~~~-~~~~--~~~~~~~ii~~l~el~~~l 176 (181)
T PRK08942 106 PGMLLSIAERLNIDLAGSPMVGDSLRDLQA----AAAAGVTPVLVRTGKGVT-TLAE--GAAPGTWVLDSLADLPQAL 176 (181)
T ss_pred HHHHHHHHHHcCCChhhEEEEeCCHHHHHH----HHHCCCeEEEEcCCCCch-hhhc--ccCCCceeecCHHHHHHHH
Confidence 999999999999999999999999999999 999999999999986533 3322 345 89999999998876
No 44
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=99.83 E-value=8.8e-21 Score=154.39 Aligned_cols=86 Identities=16% Similarity=0.089 Sum_probs=77.3
Q ss_pred CCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecCC---CChHHHHHHHHhcCCCCCCcEEEE
Q 024415 139 RFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGT---GPKVEVLKQLQKKPELQGMTLHFV 212 (268)
Q Consensus 139 ~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~~---~pk~~~~~~~~~~~~~~~~~~l~I 212 (268)
.+.++..++| +++|++++|+||+++..++..++. +|+..+|+.+++++. ||+|+++..+.++.++.|++|+||
T Consensus 106 ~~~~~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~-~gl~~~f~~~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~i~v 184 (197)
T TIGR01548 106 ETLLTPKGLLRELHRAPKGMAVVTGRPRKDAAKFLTT-HGLEILFPVQIWMEDCPPKPNPEPLILAAKALGVEACHAAMV 184 (197)
T ss_pred ccccCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHH-cCchhhCCEEEeecCCCCCcCHHHHHHHHHHhCcCcccEEEE
Confidence 3455667777 688999999999999999999999 899999999998865 599999999999999999999999
Q ss_pred ecCccchhccccccccc
Q 024415 213 EDRLATLKNVIKEPELD 229 (268)
Q Consensus 213 GDs~~Di~~~~~~A~~a 229 (268)
||+.+|+.+ |+++
T Consensus 185 GD~~~Di~a----A~~a 197 (197)
T TIGR01548 185 GDTVDDIIT----GRKA 197 (197)
T ss_pred eCCHHHHHH----HHhC
Confidence 999999999 8764
No 45
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=99.82 E-value=9.8e-20 Score=145.60 Aligned_cols=117 Identities=26% Similarity=0.274 Sum_probs=94.0
Q ss_pred CCCCChHHHH---HcCCCeEEEEcCCCH---------------HHHHHHHHHhcCCCCCCCeEEec--------------
Q 024415 139 RFYPGIPDAL---KFASSRIYIVTTKQS---------------RFADALLRELAGVTIPPDRIYGL-------------- 186 (268)
Q Consensus 139 ~~~pg~~e~L---~~~g~~i~ivTn~~~---------------~~~~~~l~~~~gl~~~f~~i~~~-------------- 186 (268)
.++||+.++| +++|++++|+||++. ......+.. .++. |+.++.+
T Consensus 26 ~~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~--~~~i~~~~~~~~~~~~~~~~~ 102 (176)
T TIGR00213 26 EFIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQLTEWMDWSLAE-RDVD--LDGIYYCPHHPEGVEEFRQVC 102 (176)
T ss_pred EECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHH-cCCC--ccEEEECCCCCcccccccCCC
Confidence 3779999999 689999999999984 344456666 5665 6665532
Q ss_pred -CCCChHHHHHHHHhcCCCCCCcEEEEecCccchhcccccccccCCeE-EEeecCCCCHHHHHhhcCCCCEEEcCHhHHH
Q 024415 187 -GTGPKVEVLKQLQKKPELQGMTLHFVEDRLATLKNVIKEPELDGWNL-YLGDWGYNTQKEREEAASIPRIQLLQLSDFS 264 (268)
Q Consensus 187 -~~~pk~~~~~~~~~~~~~~~~~~l~IGDs~~Di~~~~~~A~~aG~~~-v~v~~g~~~~~~~~~~~~~p~~~~~~~~~l~ 264 (268)
..||+|+++..+.+++++.|++++||||+..|+++ |+++|+.+ +++.||+..... .. ..|++++.++.+|.
T Consensus 103 ~~~KP~p~~~~~a~~~~~~~~~~~v~VGDs~~Di~a----A~~aG~~~~i~v~~g~~~~~~-~~--~~ad~~i~~~~el~ 175 (176)
T TIGR00213 103 DCRKPKPGMLLQARKELHIDMAQSYMVGDKLEDMQA----GVAAKVKTNVLVRTGKPITPE-AE--NIADWVLNSLADLP 175 (176)
T ss_pred CCCCCCHHHHHHHHHHcCcChhhEEEEcCCHHHHHH----HHHCCCcEEEEEecCCccccc-cc--ccCCEEeccHHHhh
Confidence 12699999999999999999999999999999999 99999988 899998653222 21 35899999999986
Q ss_pred h
Q 024415 265 R 265 (268)
Q Consensus 265 ~ 265 (268)
+
T Consensus 176 ~ 176 (176)
T TIGR00213 176 Q 176 (176)
T ss_pred C
Confidence 4
No 46
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=99.80 E-value=1.8e-20 Score=149.58 Aligned_cols=84 Identities=19% Similarity=0.172 Sum_probs=76.8
Q ss_pred cCCCCCChHHHHHcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecCC----CChHHHHHHHHhcCCCCCCcEEEE
Q 024415 137 ANRFYPGIPDALKFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGT----GPKVEVLKQLQKKPELQGMTLHFV 212 (268)
Q Consensus 137 ~~~~~pg~~e~L~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~~----~pk~~~~~~~~~~~~~~~~~~l~I 212 (268)
..+++||+.++|+ +++|+||++...++..+++ +|+..+|+.+++++. ||+|+++..+.++.+++|++|+||
T Consensus 88 ~~~~~~g~~~~L~----~~~i~Tn~~~~~~~~~l~~-~~l~~~fd~v~~~~~~~~~KP~p~~f~~~~~~~~~~p~~~l~v 162 (175)
T TIGR01493 88 NLPPWPDSAAALA----RVAILSNASHWAFDQFAQQ-AGLPWYFDRAFSVDTVRAYKPDPVVYELVFDTVGLPPDRVLMV 162 (175)
T ss_pred cCCCCCchHHHHH----HHhhhhCCCHHHHHHHHHH-CCCHHHHhhhccHhhcCCCCCCHHHHHHHHHHHCCCHHHeEeE
Confidence 4569999999998 4899999999999999999 899999999988865 599999999999999999999999
Q ss_pred ecCccchhccccccccc
Q 024415 213 EDRLATLKNVIKEPELD 229 (268)
Q Consensus 213 GDs~~Di~~~~~~A~~a 229 (268)
||+..|+.+ |+++
T Consensus 163 gD~~~Di~~----A~~~ 175 (175)
T TIGR01493 163 AAHQWDLIG----ARKF 175 (175)
T ss_pred ecChhhHHH----HhcC
Confidence 999999999 8763
No 47
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=99.80 E-value=5.8e-20 Score=143.62 Aligned_cols=87 Identities=23% Similarity=0.271 Sum_probs=78.3
Q ss_pred cCCCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecCC---CChHHHHHHHHhcCCCCCCcEE
Q 024415 137 ANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGT---GPKVEVLKQLQKKPELQGMTLH 210 (268)
Q Consensus 137 ~~~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~~---~pk~~~~~~~~~~~~~~~~~~l 210 (268)
....+||+.++| +++|++++|+||+....+...++. + +..+|+.+++++. ||+|+++.+++.+++++| +|+
T Consensus 62 ~~~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~-~-l~~~f~~i~~~~~~~~Kp~~~~~~~~~~~~~~~~-~~l 138 (154)
T TIGR01549 62 EEAYIRGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRK-H-LGDYFDLILGSDEFGAKPEPEIFLAALESLGLPP-EVL 138 (154)
T ss_pred hheeccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHH-H-HHhcCcEEEecCCCCCCcCHHHHHHHHHHcCCCC-CEE
Confidence 335679999999 578999999999999999999998 5 7889999988764 599999999999999999 999
Q ss_pred EEecCccchhcccccccccC
Q 024415 211 FVEDRLATLKNVIKEPELDG 230 (268)
Q Consensus 211 ~IGDs~~Di~~~~~~A~~aG 230 (268)
||||+..|+++ |+++|
T Consensus 139 ~iGDs~~Di~a----a~~aG 154 (154)
T TIGR01549 139 HVGDNLNDIEG----ARNAG 154 (154)
T ss_pred EEeCCHHHHHH----HHHcc
Confidence 99999999999 99887
No 48
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=99.80 E-value=2.4e-19 Score=141.71 Aligned_cols=103 Identities=16% Similarity=0.104 Sum_probs=90.0
Q ss_pred ccCCCCCChHHHH---HcCCCeEEEEcCC-CHHHHHHHHHHhcCCC---------CCCCeEEecCCC----ChHHHHHHH
Q 024415 136 GANRFYPGIPDAL---KFASSRIYIVTTK-QSRFADALLRELAGVT---------IPPDRIYGLGTG----PKVEVLKQL 198 (268)
Q Consensus 136 ~~~~~~pg~~e~L---~~~g~~i~ivTn~-~~~~~~~~l~~~~gl~---------~~f~~i~~~~~~----pk~~~~~~~ 198 (268)
...+++||+.++| +++|++++|+||+ ....++..++. +|+. .+|+.+++++.. |.+.+++++
T Consensus 42 ~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~~-~~l~~~~~~~~~~~~Fd~iv~~~~~~~~kp~~~i~~~~ 120 (174)
T TIGR01685 42 TEVTLIKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILGT-FEITYAGKTVPMHSLFDDRIEIYKPNKAKQLEMILQKV 120 (174)
T ss_pred CEEEEcccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHh-CCcCCCCCcccHHHhceeeeeccCCchHHHHHHHHHHh
Confidence 3457899999999 6899999999998 88889999999 8998 999999998652 446677888
Q ss_pred HhcC--CCCCCcEEEEecCccchhcccccccccCCeEEEeecCCCCH
Q 024415 199 QKKP--ELQGMTLHFVEDRLATLKNVIKEPELDGWNLYLGDWGYNTQ 243 (268)
Q Consensus 199 ~~~~--~~~~~~~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~~~ 243 (268)
.+.. +++|++|+||||++.|+.+ |+++|+.++++.+|+.-.
T Consensus 121 ~~~~~~gl~p~e~l~VgDs~~di~a----A~~aGi~~i~v~~g~~~~ 163 (174)
T TIGR01685 121 NKVDPSVLKPAQILFFDDRTDNVRE----VWGYGVTSCYCPSGMDKG 163 (174)
T ss_pred hhcccCCCCHHHeEEEcChhHhHHH----HHHhCCEEEEcCCCccHH
Confidence 7777 8999999999999999999 999999999999997443
No 49
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=99.79 E-value=1.9e-18 Score=142.16 Aligned_cols=103 Identities=13% Similarity=0.097 Sum_probs=88.7
Q ss_pred hccCCCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhc---CCCCCCCeEEecC--CCChHHHHHHHHhcCCCCC
Q 024415 135 IGANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELA---GVTIPPDRIYGLG--TGPKVEVLKQLQKKPELQG 206 (268)
Q Consensus 135 ~~~~~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~---gl~~~f~~i~~~~--~~pk~~~~~~~~~~~~~~~ 206 (268)
....+++||+.++| +++|++++|+||++...+...++. . ++..+|+.++... .||+|+.+.++.++++++|
T Consensus 91 ~~~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~-~~~~~L~~~f~~~fd~~~g~KP~p~~y~~i~~~lgv~p 169 (220)
T TIGR01691 91 ELTSHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGH-SDAGNLTPYFSGYFDTTVGLKTEAQSYVKIAGQLGSPP 169 (220)
T ss_pred CcccCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhh-ccccchhhhcceEEEeCcccCCCHHHHHHHHHHhCcCh
Confidence 44568999999999 689999999999999988888877 5 5666677665433 3699999999999999999
Q ss_pred CcEEEEecCccchhcccccccccCCeEEEeecCCCC
Q 024415 207 MTLHFVEDRLATLKNVIKEPELDGWNLYLGDWGYNT 242 (268)
Q Consensus 207 ~~~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~~ 242 (268)
++++||||+..|+++ |+++||.++++.++.+.
T Consensus 170 ~e~lfVgDs~~Di~A----A~~AG~~ti~v~r~g~~ 201 (220)
T TIGR01691 170 REILFLSDIINELDA----ARKAGLHTGQLVRPGND 201 (220)
T ss_pred hHEEEEeCCHHHHHH----HHHcCCEEEEEECCCCC
Confidence 999999999999999 99999999999987543
No 50
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=99.77 E-value=9e-18 Score=136.77 Aligned_cols=94 Identities=13% Similarity=0.010 Sum_probs=79.7
Q ss_pred cCCCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecC-C-------------CChHHHHHHHH
Q 024415 137 ANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLG-T-------------GPKVEVLKQLQ 199 (268)
Q Consensus 137 ~~~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~-~-------------~pk~~~~~~~~ 199 (268)
..+++||+.++| +++|++++|+||+....++..++. +|+..+|+..+..+ . .+|+++++++.
T Consensus 78 ~~~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~-~g~~~~~~~~~~~~~~g~~~p~~~~~~~~~~k~~~~~~~~ 156 (201)
T TIGR01491 78 EISLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEK-LNPDYVYSNELVFDEKGFIQPDGIVRVTFDNKGEAVERLK 156 (201)
T ss_pred hCCCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHH-hCCCeEEEEEEEEcCCCeEecceeeEEccccHHHHHHHHH
Confidence 457999999999 689999999999999999999999 79987776554432 1 13457889999
Q ss_pred hcCCCCCCcEEEEecCccchhcccccccccCCeEEE
Q 024415 200 KKPELQGMTLHFVEDRLATLKNVIKEPELDGWNLYL 235 (268)
Q Consensus 200 ~~~~~~~~~~l~IGDs~~Di~~~~~~A~~aG~~~v~ 235 (268)
++.++++++++||||+.+|+.+ |+.+|+.++.
T Consensus 157 ~~~~~~~~~~i~iGDs~~D~~~----a~~ag~~~a~ 188 (201)
T TIGR01491 157 RELNPSLTETVAVGDSKNDLPM----FEVADISISL 188 (201)
T ss_pred HHhCCCHHHEEEEcCCHhHHHH----HHhcCCeEEE
Confidence 9999999999999999999999 9999996654
No 51
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.77 E-value=6.1e-19 Score=144.35 Aligned_cols=104 Identities=17% Similarity=0.222 Sum_probs=89.4
Q ss_pred cCCCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecCC----CChHHHHHHHHhcCCCCCCcE
Q 024415 137 ANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGT----GPKVEVLKQLQKKPELQGMTL 209 (268)
Q Consensus 137 ~~~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~~----~pk~~~~~~~~~~~~~~~~~~ 209 (268)
.....+++.++| +..|..++++||.+...- ..+.. +|+..+||.++.|.. ||+|++++.++++.+..|++|
T Consensus 111 ~~~~~~~~~~~lq~lR~~g~~l~iisN~d~r~~-~~l~~-~~l~~~fD~vv~S~e~g~~KPDp~If~~al~~l~v~Pee~ 188 (237)
T KOG3085|consen 111 AWKYLDGMQELLQKLRKKGTILGIISNFDDRLR-LLLLP-LGLSAYFDFVVESCEVGLEKPDPRIFQLALERLGVKPEEC 188 (237)
T ss_pred CceeccHHHHHHHHHHhCCeEEEEecCCcHHHH-HHhhc-cCHHHhhhhhhhhhhhccCCCChHHHHHHHHHhCCChHHe
Confidence 456778888888 699999999999988775 77777 799999999988754 599999999999999999999
Q ss_pred EEEecCc-cchhcccccccccCCeEEEeecCCCCHHHH
Q 024415 210 HFVEDRL-ATLKNVIKEPELDGWNLYLGDWGYNTQKER 246 (268)
Q Consensus 210 l~IGDs~-~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~ 246 (268)
+||||+. +|+++ |+++||+++.|..+.+...++
T Consensus 189 vhIgD~l~nD~~g----A~~~G~~ailv~~~~~~~~~~ 222 (237)
T KOG3085|consen 189 VHIGDLLENDYEG----ARNLGWHAILVDNSITALKEL 222 (237)
T ss_pred EEecCccccccHh----HHHcCCEEEEEccccchhhhh
Confidence 9999995 78999 999999999998765444343
No 52
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=99.76 E-value=8.2e-18 Score=139.17 Aligned_cols=121 Identities=15% Similarity=0.110 Sum_probs=83.1
Q ss_pred ccCCCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCC--CC--CeEEecCC----CChHHH----------
Q 024415 136 GANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTI--PP--DRIYGLGT----GPKVEV---------- 194 (268)
Q Consensus 136 ~~~~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~--~f--~~i~~~~~----~pk~~~---------- 194 (268)
...+++||+.++| +++|++++|+||+....++..+++ + +.. .+ +..++++. +|.|..
T Consensus 71 ~~~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~-~-~~~~~i~~n~~~~~~~~~~~~kp~p~~~~~~~~~~~~ 148 (219)
T PRK09552 71 ETAEIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQG-L-IPKEQIYCNGSDFSGEYITITWPHPCDEHCQNHCGCC 148 (219)
T ss_pred hCCCcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHH-h-CCcCcEEEeEEEecCCeeEEeccCCccccccccCCCc
Confidence 4467999999999 699999999999999999999998 6 543 11 22233222 243322
Q ss_pred HHHHHhcCCCCCCcEEEEecCccchhcccccccccCCeEEEeecCCCCHHHHHhhcCCCCEEEcCHhHHHhhc
Q 024415 195 LKQLQKKPELQGMTLHFVEDRLATLKNVIKEPELDGWNLYLGDWGYNTQKEREEAASIPRIQLLQLSDFSRKL 267 (268)
Q Consensus 195 ~~~~~~~~~~~~~~~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~~~~p~~~~~~~~~l~~~l 267 (268)
-..+..+++..+.+|+|||||.+|+.+ |++||+.++ .+. ..+.... ...|.+.+.++.|+...|
T Consensus 149 K~~~l~~~~~~~~~~i~iGDs~~Di~a----a~~Ag~~~a---~~~-l~~~~~~-~~~~~~~~~~f~ei~~~l 212 (219)
T PRK09552 149 KPSLIRKLSDTNDFHIVIGDSITDLEA----AKQADKVFA---RDF-LITKCEE-LGIPYTPFETFHDVQTEL 212 (219)
T ss_pred hHHHHHHhccCCCCEEEEeCCHHHHHH----HHHCCccee---HHH-HHHHHHH-cCCCccccCCHHHHHHHH
Confidence 123344556677789999999999999 999999333 221 1111122 235888999999987765
No 53
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=99.75 E-value=6.7e-18 Score=139.98 Aligned_cols=98 Identities=8% Similarity=-0.022 Sum_probs=81.0
Q ss_pred cCCCCCChHHHH---HcCCCeEEEEcCC----CHHHHHHHHHHhcCCCCCCCeEEecCCC--ChHHHHHHHHhcCCCCCC
Q 024415 137 ANRFYPGIPDAL---KFASSRIYIVTTK----QSRFADALLRELAGVTIPPDRIYGLGTG--PKVEVLKQLQKKPELQGM 207 (268)
Q Consensus 137 ~~~~~pg~~e~L---~~~g~~i~ivTn~----~~~~~~~~l~~~~gl~~~f~~i~~~~~~--pk~~~~~~~~~~~~~~~~ 207 (268)
...+++++.++| +++|+++++|||+ ....++..++. +|+..+|+.+++++.. |||+... +..+++++
T Consensus 112 ~s~p~~~a~elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll~~-lGi~~~f~~i~~~d~~~~~Kp~~~~-~l~~~~i~-- 187 (237)
T TIGR01672 112 FSIPKEVARQLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLAKN-FHIPAMNPVIFAGDKPGQYQYTKTQ-WIQDKNIR-- 187 (237)
T ss_pred CCcchhHHHHHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHHHH-hCCchheeEEECCCCCCCCCCCHHH-HHHhCCCe--
Confidence 345677799999 6999999999998 66788889998 8999999999998752 4554443 44566775
Q ss_pred cEEEEecCccchhcccccccccCCeEEEeecCCCCHH
Q 024415 208 TLHFVEDRLATLKNVIKEPELDGWNLYLGDWGYNTQK 244 (268)
Q Consensus 208 ~~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~~~~ 244 (268)
+||||+.+|+.+ |+++|+.++.+.||++...
T Consensus 188 --i~vGDs~~DI~a----Ak~AGi~~I~V~~g~~s~~ 218 (237)
T TIGR01672 188 --IHYGDSDNDITA----AKEAGARGIRILRASNSTY 218 (237)
T ss_pred --EEEeCCHHHHHH----HHHCCCCEEEEEecCCCCC
Confidence 999999999999 9999999999999987654
No 54
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=99.75 E-value=2.1e-18 Score=133.83 Aligned_cols=95 Identities=24% Similarity=0.292 Sum_probs=78.0
Q ss_pred CCCCChHHHH---HcCCCeEEEEcCCCH---------------HHHHHHHHHhcCCCCCCCeEEe----cC----CCChH
Q 024415 139 RFYPGIPDAL---KFASSRIYIVTTKQS---------------RFADALLRELAGVTIPPDRIYG----LG----TGPKV 192 (268)
Q Consensus 139 ~~~pg~~e~L---~~~g~~i~ivTn~~~---------------~~~~~~l~~~~gl~~~f~~i~~----~~----~~pk~ 192 (268)
+++||+.++| +++|++++|+||+++ ..+...++. +|+... ..+++ ++ .||+|
T Consensus 27 ~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~l~~~-~~~~~~~~~~~~~~~~KP~~ 104 (147)
T TIGR01656 27 QLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQ-LGVAVD-GVLFCPHHPADNCSCRKPKP 104 (147)
T ss_pred EEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHh-CCCcee-EEEECCCCCCCCCCCCCCCH
Confidence 3778998888 799999999999874 456677888 788521 12221 22 26999
Q ss_pred HHHHHHHhcCCCCCCcEEEEecCccchhcccccccccCCeEEEeecC
Q 024415 193 EVLKQLQKKPELQGMTLHFVEDRLATLKNVIKEPELDGWNLYLGDWG 239 (268)
Q Consensus 193 ~~~~~~~~~~~~~~~~~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g 239 (268)
++++.+.++++++|++|+||||+..|+++ |+++|+.+||+..|
T Consensus 105 ~~~~~~~~~~~~~~~e~i~IGDs~~Di~~----A~~~Gi~~v~i~~~ 147 (147)
T TIGR01656 105 GLILEALKRLGVDASRSLVVGDRLRDLQA----ARNAGLAAVLLVDG 147 (147)
T ss_pred HHHHHHHHHcCCChHHEEEEcCCHHHHHH----HHHCCCCEEEecCC
Confidence 99999999999999999999999999999 99999999999765
No 55
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=99.75 E-value=7.2e-18 Score=128.43 Aligned_cols=91 Identities=31% Similarity=0.413 Sum_probs=77.9
Q ss_pred CCCChHHHH---HcCCCeEEEEcCCC--------HHHHHHHHHHhcCCCCCCCeEEecC--CCChHHHHHHHHhcC-CCC
Q 024415 140 FYPGIPDAL---KFASSRIYIVTTKQ--------SRFADALLRELAGVTIPPDRIYGLG--TGPKVEVLKQLQKKP-ELQ 205 (268)
Q Consensus 140 ~~pg~~e~L---~~~g~~i~ivTn~~--------~~~~~~~l~~~~gl~~~f~~i~~~~--~~pk~~~~~~~~~~~-~~~ 205 (268)
++||+.++| +++|++++|+||+. ...+...++. +|+. ++.++.+. .||+|++++.+..+. +++
T Consensus 26 ~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~-~~l~--~~~~~~~~~~~KP~~~~~~~~~~~~~~~~ 102 (132)
T TIGR01662 26 LYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEE-LGVP--IDVLYACPHCRKPKPGMFLEALKRFNEID 102 (132)
T ss_pred eCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHH-CCCC--EEEEEECCCCCCCChHHHHHHHHHcCCCC
Confidence 678888888 68999999999998 7888899999 7885 33333322 369999999999999 599
Q ss_pred CCcEEEEec-CccchhcccccccccCCeEEEee
Q 024415 206 GMTLHFVED-RLATLKNVIKEPELDGWNLYLGD 237 (268)
Q Consensus 206 ~~~~l~IGD-s~~Di~~~~~~A~~aG~~~v~v~ 237 (268)
|++++|||| +..|+.+ |+++|+.+|++.
T Consensus 103 ~~~~v~IGD~~~~Di~~----A~~~Gi~~i~~~ 131 (132)
T TIGR01662 103 PEESVYVGDQDLTDLQA----AKRAGLAFILVA 131 (132)
T ss_pred hhheEEEcCCCcccHHH----HHHCCCeEEEee
Confidence 999999999 6999999 999999999985
No 56
>PRK06769 hypothetical protein; Validated
Probab=99.74 E-value=4.8e-18 Score=135.34 Aligned_cols=122 Identities=15% Similarity=0.032 Sum_probs=96.0
Q ss_pred CCCCChHHHH---HcCCCeEEEEcCCCHH--------HHHHHHHHhcCCCCCCCeEE-ecC----CCChHHHHHHHHhcC
Q 024415 139 RFYPGIPDAL---KFASSRIYIVTTKQSR--------FADALLRELAGVTIPPDRIY-GLG----TGPKVEVLKQLQKKP 202 (268)
Q Consensus 139 ~~~pg~~e~L---~~~g~~i~ivTn~~~~--------~~~~~l~~~~gl~~~f~~i~-~~~----~~pk~~~~~~~~~~~ 202 (268)
.++||+.++| +++|++++|+||++.. .....++. +|+..+|..+. +++ .||+|+++.++.+++
T Consensus 28 ~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l~~-~g~~~~~~~~~~~~~~~~~~KP~p~~~~~~~~~l 106 (173)
T PRK06769 28 TLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQELKG-FGFDDIYLCPHKHGDGCECRKPSTGMLLQAAEKH 106 (173)
T ss_pred EECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHHHHh-CCcCEEEECcCCCCCCCCCCCCCHHHHHHHHHHc
Confidence 4789999999 6889999999998742 23344666 67755443332 222 369999999999999
Q ss_pred CCCCCcEEEEecCccchhcccccccccCCeEEEeecCCCCH------HHHHhhcCCCCEEEcCHhHHHhhc
Q 024415 203 ELQGMTLHFVEDRLATLKNVIKEPELDGWNLYLGDWGYNTQ------KEREEAASIPRIQLLQLSDFSRKL 267 (268)
Q Consensus 203 ~~~~~~~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~~~------~~~~~~~~~p~~~~~~~~~l~~~l 267 (268)
+.+|++|+||||+..|+.+ |+++|+.+|++.||++.. +.+.. ..|++++.++.||.++|
T Consensus 107 ~~~p~~~i~IGD~~~Di~a----A~~aGi~~i~v~~g~~~~~~~~~~~~l~~--~~~~~~~~~~~el~~~l 171 (173)
T PRK06769 107 GLDLTQCAVIGDRWTDIVA----AAKVNATTILVRTGAGYDALHTYRDKWAH--IEPNYIAENFEDAVNWI 171 (173)
T ss_pred CCCHHHeEEEcCCHHHHHH----HHHCCCeEEEEecCCCchhhhhhhccccc--CCCcchhhCHHHHHHHH
Confidence 9999999999999999999 999999999999987542 12222 46899999999998754
No 57
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=99.73 E-value=7e-17 Score=132.09 Aligned_cols=115 Identities=14% Similarity=0.108 Sum_probs=83.1
Q ss_pred ccCCCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEec--------CC--C--ChHHHHHHHHh
Q 024415 136 GANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGL--------GT--G--PKVEVLKQLQK 200 (268)
Q Consensus 136 ~~~~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~--------~~--~--pk~~~~~~~~~ 200 (268)
...+++||+.++| +++ ++++|+||+....++..+++ +|+..+|+..+.. .. + ||...++.+..
T Consensus 65 ~~~~~~pg~~e~L~~L~~~-~~~~IvS~~~~~~~~~~l~~-~gl~~~f~~~~~~~~~~~i~~~~~~~p~~k~~~l~~~~~ 142 (205)
T PRK13582 65 ATLDPLPGAVEFLDWLRER-FQVVILSDTFYEFAGPLMRQ-LGWPTLFCHSLEVDEDGMITGYDLRQPDGKRQAVKALKS 142 (205)
T ss_pred HhCCCCCCHHHHHHHHHhc-CCEEEEeCCcHHHHHHHHHH-cCCchhhcceEEECCCCeEECccccccchHHHHHHHHHH
Confidence 4567899999999 566 99999999999999999999 8998777653321 11 1 34445554443
Q ss_pred cCCCCCCcEEEEecCccchhcccccccccCCeEEEeecCCCCHHHHHhhcCCCCE-EEcCHhHHHhhc
Q 024415 201 KPELQGMTLHFVEDRLATLKNVIKEPELDGWNLYLGDWGYNTQKEREEAASIPRI-QLLQLSDFSRKL 267 (268)
Q Consensus 201 ~~~~~~~~~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~~~~p~~-~~~~~~~l~~~l 267 (268)
.+.+++|||||.+|+.+ ++++|+.. ++ +. .+.... ..|++ .+.++.+|..+|
T Consensus 143 ----~~~~~v~iGDs~~D~~~----~~aa~~~v-~~--~~--~~~~~~--~~~~~~~~~~~~el~~~l 195 (205)
T PRK13582 143 ----LGYRVIAAGDSYNDTTM----LGEADAGI-LF--RP--PANVIA--EFPQFPAVHTYDELLAAI 195 (205)
T ss_pred ----hCCeEEEEeCCHHHHHH----HHhCCCCE-EE--CC--CHHHHH--hCCcccccCCHHHHHHHH
Confidence 45678999999999999 99999743 32 22 222222 24666 899999998765
No 58
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=99.72 E-value=2.3e-17 Score=129.55 Aligned_cols=99 Identities=22% Similarity=0.214 Sum_probs=84.9
Q ss_pred CCCCChHHHH---HcCCCeEEEEcCCC---------------HHHHHHHHHHhcCCCCCCCeE-Ee----cCC----CCh
Q 024415 139 RFYPGIPDAL---KFASSRIYIVTTKQ---------------SRFADALLRELAGVTIPPDRI-YG----LGT----GPK 191 (268)
Q Consensus 139 ~~~pg~~e~L---~~~g~~i~ivTn~~---------------~~~~~~~l~~~~gl~~~f~~i-~~----~~~----~pk 191 (268)
+++||+.++| +++|++++|+||.+ ...+...++. +|+. |+.+ ++ ++. ||+
T Consensus 29 ~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~-~gl~--fd~ii~~~~~~~~~~~~~KP~ 105 (161)
T TIGR01261 29 RFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRS-QGII--FDDVLICPHFPDDNCDCRKPK 105 (161)
T ss_pred eECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHH-CCCc--eeEEEECCCCCCCCCCCCCCC
Confidence 4789999999 68899999999973 5577888999 7996 7655 44 333 599
Q ss_pred HHHHHHHHhcCCCCCCcEEEEecCccchhcccccccccCCeEEEeecCCCCHH
Q 024415 192 VEVLKQLQKKPELQGMTLHFVEDRLATLKNVIKEPELDGWNLYLGDWGYNTQK 244 (268)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~~~~ 244 (268)
|+++..+.++++++|++++||||+..|+++ |+++|+.++++.++.-++.
T Consensus 106 ~~~~~~~~~~~~~~~~e~l~IGD~~~Di~~----A~~aGi~~i~~~~~~~~~~ 154 (161)
T TIGR01261 106 IKLLEPYLKKNLIDKARSYVIGDRETDMQL----AENLGIRGIQYDEEELNWD 154 (161)
T ss_pred HHHHHHHHHHcCCCHHHeEEEeCCHHHHHH----HHHCCCeEEEEChhhcCHH
Confidence 999999999999999999999999999999 9999999999998865554
No 59
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=99.68 E-value=7.3e-17 Score=131.67 Aligned_cols=120 Identities=12% Similarity=0.065 Sum_probs=96.6
Q ss_pred hccCCCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcC-CCCCCCeEEecCC------CChHHHHHHHHhcCCC
Q 024415 135 IGANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAG-VTIPPDRIYGLGT------GPKVEVLKQLQKKPEL 204 (268)
Q Consensus 135 ~~~~~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~g-l~~~f~~i~~~~~------~pk~~~~~~~~~~~~~ 204 (268)
.....+.||+.+++ +.+|++++++|+.++......+++ ++ +...|+.++.++. ||+|+++-.....++.
T Consensus 88 ~~~~~~~PGa~kLv~~L~~~gip~alat~s~~~~~~~k~~~-~~~~~~~f~~~v~~d~~~v~~gKP~Pdi~l~A~~~l~~ 166 (222)
T KOG2914|consen 88 FMNSILMPGAEKLVNHLKNNGIPVALATSSTSASFELKISR-HEDIFKNFSHVVLGDDPEVKNGKPDPDIYLKAAKRLGV 166 (222)
T ss_pred ccccccCCcHHHHHHHHHhCCCCeeEEecCCcccHHHHHHH-hhHHHHhcCCCeecCCccccCCCCCchHHHHHHHhcCC
Confidence 45567899999999 699999999999999999998888 45 6677887776332 4999999999999999
Q ss_pred CC-CcEEEEecCccchhcccccccccCCeEEEeecCCCCHHHHHhhcCCCCEEEcCHhHH
Q 024415 205 QG-MTLHFVEDRLATLKNVIKEPELDGWNLYLGDWGYNTQKEREEAASIPRIQLLQLSDF 263 (268)
Q Consensus 205 ~~-~~~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~~~~p~~~~~~~~~l 263 (268)
.| +.|++++|++.++++ |++|||.+|++.+. .-...+. ..+++.+.++.++
T Consensus 167 ~~~~k~lVfeds~~Gv~a----a~aagm~vi~v~~~-~~~~~~~---~~~~~~~~~~~~~ 218 (222)
T KOG2914|consen 167 PPPSKCLVFEDSPVGVQA----AKAAGMQVVGVATP-DLSNLFS---AGATLILESLEDF 218 (222)
T ss_pred CCccceEEECCCHHHHHH----HHhcCCeEEEecCC-Ccchhhh---hccceeccccccc
Confidence 88 999999999999999 99999999999872 2222222 3456777766554
No 60
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=99.68 E-value=9.6e-16 Score=123.40 Aligned_cols=87 Identities=17% Similarity=0.223 Sum_probs=75.7
Q ss_pred CCCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecCC-----------------------C-C
Q 024415 138 NRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGT-----------------------G-P 190 (268)
Q Consensus 138 ~~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~~-----------------------~-p 190 (268)
.+++||+.++| +++|++++|+||+....++..++. +|+..+|+.+++++. + +
T Consensus 71 ~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~-~~l~~~f~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~ 149 (188)
T TIGR01489 71 APIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEG-IGEKDVFIEIYSNPASFDNDGRHIVWPHHCHGCCSCPCGCC 149 (188)
T ss_pred CCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHH-cCChhheeEEeccCceECCCCcEEEecCCCCccCcCCCCCC
Confidence 57999999999 688999999999999999999999 799999999886421 2 6
Q ss_pred hHHHHHHHHhcCCCCCCcEEEEecCccchhcccccccccCCe
Q 024415 191 KVEVLKQLQKKPELQGMTLHFVEDRLATLKNVIKEPELDGWN 232 (268)
Q Consensus 191 k~~~~~~~~~~~~~~~~~~l~IGDs~~Di~~~~~~A~~aG~~ 232 (268)
|+++++++..+. +.+++||||+.+|+.+ |+++++.
T Consensus 150 K~~~~~~~~~~~---~~~~i~iGD~~~D~~a----a~~~d~~ 184 (188)
T TIGR01489 150 KGKVIHKLSEPK---YQHIIYIGDGVTDVCP----AKLSDVV 184 (188)
T ss_pred HHHHHHHHHhhc---CceEEEECCCcchhch----HhcCCcc
Confidence 899999988764 7888999999999999 9998763
No 61
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=99.68 E-value=1.3e-15 Score=132.23 Aligned_cols=119 Identities=14% Similarity=0.135 Sum_probs=90.5
Q ss_pred ccCCCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCC-------eEEec----C---CCChHHHHHHH
Q 024415 136 GANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPD-------RIYGL----G---TGPKVEVLKQL 198 (268)
Q Consensus 136 ~~~~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~-------~i~~~----~---~~pk~~~~~~~ 198 (268)
...+++||+.++| ++.|++++|+|++.....+..++. +|+...+. ..+++ + .+||+++++.+
T Consensus 178 ~~l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~-Lgld~~~an~lei~dg~ltg~v~g~iv~~k~K~~~L~~l 256 (322)
T PRK11133 178 ENLPLMPGLTELVLKLQALGWKVAIASGGFTYFADYLRDK-LRLDAAVANELEIMDGKLTGNVLGDIVDAQYKADTLTRL 256 (322)
T ss_pred HhCCCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHH-cCCCeEEEeEEEEECCEEEeEecCccCCcccHHHHHHHH
Confidence 3467999999998 799999999999999888988888 78865332 11211 1 24999999999
Q ss_pred HhcCCCCCCcEEEEecCccchhcccccccccCCeEEEeecCCCCHHHHHhhcCCCCEEEc--CHhHHHhhc
Q 024415 199 QKKPELQGMTLHFVEDRLATLKNVIKEPELDGWNLYLGDWGYNTQKEREEAASIPRIQLL--QLSDFSRKL 267 (268)
Q Consensus 199 ~~~~~~~~~~~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~~~~p~~~~~--~~~~l~~~l 267 (268)
.+++++.+++|++|||+.+|+.+ ++.||+.+++ |.....++ .+++.++ ++..+..+|
T Consensus 257 a~~lgi~~~qtIaVGDg~NDl~m----~~~AGlgiA~-----nAkp~Vk~---~Ad~~i~~~~l~~~l~~~ 315 (322)
T PRK11133 257 AQEYEIPLAQTVAIGDGANDLPM----IKAAGLGIAY-----HAKPKVNE---QAQVTIRHADLMGVLCIL 315 (322)
T ss_pred HHHcCCChhhEEEEECCHHHHHH----HHHCCCeEEe-----CCCHHHHh---hCCEEecCcCHHHHHHHh
Confidence 99999999999999999999999 9999986554 34445554 3556655 444444443
No 62
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=99.67 E-value=1.7e-16 Score=125.29 Aligned_cols=89 Identities=21% Similarity=0.261 Sum_probs=74.8
Q ss_pred CCCChHHHH---HcCCCeEEEEcCCCHH------------HHHHHHHHhcCCCCCCCeEEecCC----CChHHHHHHHHh
Q 024415 140 FYPGIPDAL---KFASSRIYIVTTKQSR------------FADALLRELAGVTIPPDRIYGLGT----GPKVEVLKQLQK 200 (268)
Q Consensus 140 ~~pg~~e~L---~~~g~~i~ivTn~~~~------------~~~~~l~~~~gl~~~f~~i~~~~~----~pk~~~~~~~~~ 200 (268)
++||+.++| +++|++++|+||++.. .++..++. +|+. ++.+++++. +|+|++++++.+
T Consensus 43 ~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~-~gl~--~~~ii~~~~~~~~KP~p~~~~~~~~ 119 (166)
T TIGR01664 43 LYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEK-LKVP--IQVLAATHAGLYRKPMTGMWEYLQS 119 (166)
T ss_pred ecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHH-cCCC--EEEEEecCCCCCCCCccHHHHHHHH
Confidence 679999988 6899999999998763 46778898 7984 355555442 589999999999
Q ss_pred cCC--CCCCcEEEEecCc--------cchhcccccccccCCeEEE
Q 024415 201 KPE--LQGMTLHFVEDRL--------ATLKNVIKEPELDGWNLYL 235 (268)
Q Consensus 201 ~~~--~~~~~~l~IGDs~--------~Di~~~~~~A~~aG~~~v~ 235 (268)
+.+ +.+++++||||+. .|+++ |+++|+.+++
T Consensus 120 ~~~~~~~~~~~v~VGD~~~~~~~~~~~Di~a----A~~aGi~~~~ 160 (166)
T TIGR01664 120 QYNSPIKMTRSFYVGDAAGRKLDFSDADIKF----AKNLGLEFKY 160 (166)
T ss_pred HcCCCCCchhcEEEECCCCCCCCCchhHHHH----HHHCCCCcCC
Confidence 998 8999999999996 69999 9999998875
No 63
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=99.65 E-value=4.8e-17 Score=137.61 Aligned_cols=122 Identities=10% Similarity=-0.013 Sum_probs=97.3
Q ss_pred CCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecC-------CCChHHHHHHHHhcCCCCCCcEE
Q 024415 141 YPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLG-------TGPKVEVLKQLQKKPELQGMTLH 210 (268)
Q Consensus 141 ~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~-------~~pk~~~~~~~~~~~~~~~~~~l 210 (268)
|+++.+.+ +..+++++++||.++......+.. .|+..+|+.+.++. .||+|++++.+.++++.+|++++
T Consensus 122 y~~l~~a~~~L~~~~~~~~iatn~~~~~~~~~~~~-~g~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~~~ 200 (257)
T TIGR01458 122 YQILNQAFRLLLDGAKPLLIAIGKGRYYKRKDGLA-LDVGPFVTALEYATDTKATVVGKPSKTFFLEALRATGCEPEEAV 200 (257)
T ss_pred HHHHHHHHHHHHcCCCCEEEEeCCCCCCcCCCCCC-CCchHHHHHHHHHhCCCceeecCCCHHHHHHHHHHhCCChhhEE
Confidence 55666655 578899999999888766555556 67777777655332 26999999999999999999999
Q ss_pred EEecCc-cchhcccccccccCCeEEEeecCCCCHHHHHhhcCCCCEEEcCHhHHHhhc
Q 024415 211 FVEDRL-ATLKNVIKEPELDGWNLYLGDWGYNTQKEREEAASIPRIQLLQLSDFSRKL 267 (268)
Q Consensus 211 ~IGDs~-~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~~~~p~~~~~~~~~l~~~l 267 (268)
||||+. .|+.+ |+++|+.+++|.||.....+.+.....|++++.++.+|.++|
T Consensus 201 ~vGD~~~~Di~~----a~~~G~~~i~v~~G~~~~~~~~~~~~~pd~~~~sl~el~~~l 254 (257)
T TIGR01458 201 MIGDDCRDDVGG----AQDCGMRGIQVRTGKYRPSDEEKINVPPDLTCDSLPHAVDLI 254 (257)
T ss_pred EECCCcHHHHHH----HHHcCCeEEEECCCCCChHHhcccCCCCCEEECCHHHHHHHH
Confidence 999996 89999 999999999999996554444333467999999999998754
No 64
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=99.63 E-value=1.1e-15 Score=126.70 Aligned_cols=98 Identities=11% Similarity=-0.010 Sum_probs=78.3
Q ss_pred hccCCCCCChHHHH---HcCCCeEEEEcCCC----HHHHHHHHHHhcCC--CCCCCeEEecCC--CChHHHHHHHHhcCC
Q 024415 135 IGANRFYPGIPDAL---KFASSRIYIVTTKQ----SRFADALLRELAGV--TIPPDRIYGLGT--GPKVEVLKQLQKKPE 203 (268)
Q Consensus 135 ~~~~~~~pg~~e~L---~~~g~~i~ivTn~~----~~~~~~~l~~~~gl--~~~f~~i~~~~~--~pk~~~~~~~~~~~~ 203 (268)
.....++||+.++| +++|+++++|||++ ...++.+++. +|+ ..+|+.+++++. +|.+. . ..++++
T Consensus 110 ~~~a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk~-~gip~~~~f~vil~gd~~~K~~K~--~-~l~~~~ 185 (237)
T PRK11009 110 DEFSIPKEVARQLIDMHVKRGDSIYFITGRTATKTETVSKTLADD-FHIPADNMNPVIFAGDKPGQYTKT--Q-WLKKKN 185 (237)
T ss_pred cccCcchHHHHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHHHH-cCCCcccceeEEEcCCCCCCCCHH--H-HHHhcC
Confidence 34467899999999 69999999999953 5577777877 799 889999988875 33332 2 223566
Q ss_pred CCCCcEEEEecCccchhcccccccccCCeEEEeecCCCCHH
Q 024415 204 LQGMTLHFVEDRLATLKNVIKEPELDGWNLYLGDWGYNTQK 244 (268)
Q Consensus 204 ~~~~~~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~~~~ 244 (268)
++ +||||+.+|+++ |++||+.+|.+.||++...
T Consensus 186 i~----I~IGDs~~Di~a----A~~AGi~~I~v~~G~~~~~ 218 (237)
T PRK11009 186 IR----IFYGDSDNDITA----AREAGARGIRILRAANSTY 218 (237)
T ss_pred Ce----EEEcCCHHHHHH----HHHcCCcEEEEecCCCCCC
Confidence 65 999999999999 9999999999999987543
No 65
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=99.62 E-value=2.8e-16 Score=134.62 Aligned_cols=118 Identities=16% Similarity=0.153 Sum_probs=90.9
Q ss_pred CCCChHHHH---HcCCCeEEEEcCCCHHHHH-HHHHHhcCCCCCCCeEEe---cC----CCChHHHHHHHHhcCCCCCCc
Q 024415 140 FYPGIPDAL---KFASSRIYIVTTKQSRFAD-ALLRELAGVTIPPDRIYG---LG----TGPKVEVLKQLQKKPELQGMT 208 (268)
Q Consensus 140 ~~pg~~e~L---~~~g~~i~ivTn~~~~~~~-~~l~~~~gl~~~f~~i~~---~~----~~pk~~~~~~~~~~~~~~~~~ 208 (268)
-|+|+.+++ +++|. ++|+||.+..... ..+.. .|+..+|+.+.+ .+ .||+|++++.+.++++..|++
T Consensus 144 ~y~~i~~~l~~L~~~g~-~~i~Tn~d~~~~~~~~~~~-~~~g~~~~~i~~~~g~~~~~~gKP~p~~~~~~~~~~~~~~~~ 221 (279)
T TIGR01452 144 SYAKLREACAHLREPGC-LFVATNRDPWHPLSDGSRT-PGTGSLVAAIETASGRQPLVVGKPSPYMFECITENFSIDPAR 221 (279)
T ss_pred CHHHHHHHHHHHhcCCC-EEEEeCCCCCCCCcCCCcc-cChHHHHHHHHHHhCCceeccCCCCHHHHHHHHHHhCCChhh
Confidence 467888877 56676 7999998864321 12223 455555555432 22 259999999999999999999
Q ss_pred EEEEecCc-cchhcccccccccCCeEEEeecCCCCHHHHHhh------cCCCCEEEcCHhHH
Q 024415 209 LHFVEDRL-ATLKNVIKEPELDGWNLYLGDWGYNTQKEREEA------ASIPRIQLLQLSDF 263 (268)
Q Consensus 209 ~l~IGDs~-~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~------~~~p~~~~~~~~~l 263 (268)
++||||+. .||.+ |+++|+.+++|.||+...+++... ...||+++.++.+|
T Consensus 222 ~lmIGD~~~tDI~~----A~~aGi~si~V~~G~~~~~~l~~~~~~~~~~~~Pd~~~~~l~~l 279 (279)
T TIGR01452 222 TLMVGDRLETDILF----GHRCGMTTVLVLSGVSRLEEAQEYLAAGQHDLVPDYVVESLADL 279 (279)
T ss_pred EEEECCChHHHHHH----HHHcCCcEEEECCCCCCHHHHHhhhcccccCCCCCEEecccccC
Confidence 99999995 89999 999999999999999888887642 34799999999874
No 66
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=99.61 E-value=1.1e-14 Score=119.93 Aligned_cols=117 Identities=12% Similarity=0.160 Sum_probs=80.7
Q ss_pred cCCCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCC---CeEEecCC----CCh--------------H
Q 024415 137 ANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPP---DRIYGLGT----GPK--------------V 192 (268)
Q Consensus 137 ~~~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f---~~i~~~~~----~pk--------------~ 192 (268)
..+++||+.++| +++|++++|+|++....++..++. ++....+ +.++.++. +|. .
T Consensus 68 ~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~-~~~~~~i~~n~~~~~~~~~~~~~p~~~~~~~~~~cg~~K~ 146 (214)
T TIGR03333 68 TAEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLLEG-IVEKDRIYCNEADFSNEYIHIDWPHPCDGTCQNQCGCCKP 146 (214)
T ss_pred cCcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHh-hCCcccEEeceeEeeCCeeEEeCCCCCccccccCCCCCHH
Confidence 457999999999 688999999999999999999998 5543333 22333322 243 3
Q ss_pred HHHHHHHhcCCCCCCcEEEEecCccchhcccccccccCCeEEEeecCCCCHHHHHhhcCCCCEEEcCHhHHHhhc
Q 024415 193 EVLKQLQKKPELQGMTLHFVEDRLATLKNVIKEPELDGWNLYLGDWGYNTQKEREEAASIPRIQLLQLSDFSRKL 267 (268)
Q Consensus 193 ~~~~~~~~~~~~~~~~~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~~~~p~~~~~~~~~l~~~l 267 (268)
.+++.+. ..+++++||||+.+|+.+ |+.||+ +++ .++ .....+. .-.|...+.++.|+...|
T Consensus 147 ~~l~~~~----~~~~~~i~iGDg~~D~~~----a~~Ad~-~~a--r~~-l~~~~~~-~~~~~~~~~~f~di~~~l 208 (214)
T TIGR03333 147 SLIRKLS----EPNDYHIVIGDSVTDVEA----AKQSDL-CFA--RDY-LLNECEE-LGLNHAPFQDFYDVRKEL 208 (214)
T ss_pred HHHHHHh----hcCCcEEEEeCCHHHHHH----HHhCCe-eEe--hHH-HHHHHHH-cCCCccCcCCHHHHHHHH
Confidence 4444443 356778999999999999 999998 222 221 1111222 234778889999987765
No 67
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=99.61 E-value=9.1e-16 Score=116.12 Aligned_cols=81 Identities=21% Similarity=0.114 Sum_probs=73.2
Q ss_pred CCCChHHHH---HcCCCeEEEEcCC-CHHHHHHHHHHhcC-------CCCCCCeEEecCCCChHHHHHHHHhcCC--CCC
Q 024415 140 FYPGIPDAL---KFASSRIYIVTTK-QSRFADALLRELAG-------VTIPPDRIYGLGTGPKVEVLKQLQKKPE--LQG 206 (268)
Q Consensus 140 ~~pg~~e~L---~~~g~~i~ivTn~-~~~~~~~~l~~~~g-------l~~~f~~i~~~~~~pk~~~~~~~~~~~~--~~~ 206 (268)
++||+.++| +++|++++|+||+ ....+...++. ++ +..+|+.+++++.+|+|+++..+.++.+ ++|
T Consensus 30 ~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~-~~~~~~i~~l~~~f~~~~~~~~~pkp~~~~~a~~~lg~~~~p 108 (128)
T TIGR01681 30 TIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKI-FEDFGIIFPLAEYFDPLTIGYWLPKSPRLVEIALKLNGVLKP 108 (128)
T ss_pred HHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHh-ccccccchhhHhhhhhhhhcCCCcHHHHHHHHHHHhcCCCCc
Confidence 667788877 6899999999999 88888888898 78 7889999999877899999999999999 999
Q ss_pred CcEEEEecCccchhc
Q 024415 207 MTLHFVEDRLATLKN 221 (268)
Q Consensus 207 ~~~l~IGDs~~Di~~ 221 (268)
++|+||||+..|+..
T Consensus 109 ~~~l~igDs~~n~~~ 123 (128)
T TIGR01681 109 KSILFVDDRPDNNEE 123 (128)
T ss_pred ceEEEECCCHhHHHH
Confidence 999999999999877
No 68
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=99.61 E-value=8e-15 Score=128.12 Aligned_cols=104 Identities=16% Similarity=0.159 Sum_probs=84.6
Q ss_pred CCCCCChHHHH---HcCCCeEEEEcCC---------------CHHHHHHHHHHhcCCCCCCCeE-Eec----C----CCC
Q 024415 138 NRFYPGIPDAL---KFASSRIYIVTTK---------------QSRFADALLRELAGVTIPPDRI-YGL----G----TGP 190 (268)
Q Consensus 138 ~~~~pg~~e~L---~~~g~~i~ivTn~---------------~~~~~~~~l~~~~gl~~~f~~i-~~~----~----~~p 190 (268)
.+++||+.++| +++|++++|+||+ ....+...++. .|+. |+.+ ++. + .+|
T Consensus 29 ~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL~~-~gl~--fd~i~i~~~~~sd~~~~rKP 105 (354)
T PRK05446 29 LAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIFES-QGIK--FDEVLICPHFPEDNCSCRKP 105 (354)
T ss_pred ceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHHHHHHHHH-cCCc--eeeEEEeCCcCcccCCCCCC
Confidence 45889999999 6899999999995 34456667888 6883 6665 442 2 259
Q ss_pred hHHHHHHHHhcCCCCCCcEEEEecCccchhcccccccccCCeEEEeecCCCCHHHHHh
Q 024415 191 KVEVLKQLQKKPELQGMTLHFVEDRLATLKNVIKEPELDGWNLYLGDWGYNTQKEREE 248 (268)
Q Consensus 191 k~~~~~~~~~~~~~~~~~~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~ 248 (268)
+|+++.++..++++.|++++||||+.+|+++ |+++|+.+|+++...-.+++.+.
T Consensus 106 ~p~~l~~a~~~l~v~~~~svmIGDs~sDi~a----Ak~aGi~~I~v~~~~~~~~~i~~ 159 (354)
T PRK05446 106 KTGLVEEYLAEGAIDLANSYVIGDRETDVQL----AENMGIKGIRYARETLNWDAIAE 159 (354)
T ss_pred CHHHHHHHHHHcCCCcccEEEEcCCHHHHHH----HHHCCCeEEEEECCCCCHHHHHH
Confidence 9999999999999999999999999999999 99999999999876555555443
No 69
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=99.60 E-value=1.6e-14 Score=114.72 Aligned_cols=100 Identities=17% Similarity=0.166 Sum_probs=86.4
Q ss_pred ccCCCCCChHHHH-HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecCC----------CChHHHHHHHHhcCCC
Q 024415 136 GANRFYPGIPDAL-KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGT----------GPKVEVLKQLQKKPEL 204 (268)
Q Consensus 136 ~~~~~~pg~~e~L-~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~~----------~pk~~~~~~~~~~~~~ 204 (268)
+...+.|-.+++| +-...+.++.||+....+.++|++ +|+.+.|+.|++.+. ||.+++++.+.+..|+
T Consensus 97 q~LkPD~~LRnlLL~l~~r~k~~FTNa~k~HA~r~Lk~-LGieDcFegii~~e~~np~~~~~vcKP~~~afE~a~k~agi 175 (244)
T KOG3109|consen 97 QDLKPDPVLRNLLLSLKKRRKWIFTNAYKVHAIRILKK-LGIEDCFEGIICFETLNPIEKTVVCKPSEEAFEKAMKVAGI 175 (244)
T ss_pred hhcCCCHHHHHHHHhCccccEEEecCCcHHHHHHHHHH-hChHHhccceeEeeccCCCCCceeecCCHHHHHHHHHHhCC
Confidence 3356677788888 333333899999999999999999 899999999988753 4889999999999999
Q ss_pred C-CCcEEEEecCccchhcccccccccCCeEEEeecCC
Q 024415 205 Q-GMTLHFVEDRLATLKNVIKEPELDGWNLYLGDWGY 240 (268)
Q Consensus 205 ~-~~~~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~ 240 (268)
. |.+++|++||.++|++ |++.|+.++++....
T Consensus 176 ~~p~~t~FfDDS~~NI~~----ak~vGl~tvlv~~~~ 208 (244)
T KOG3109|consen 176 DSPRNTYFFDDSERNIQT----AKEVGLKTVLVGREH 208 (244)
T ss_pred CCcCceEEEcCchhhHHH----HHhccceeEEEEeee
Confidence 8 9999999999999999 999999999987664
No 70
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=99.58 E-value=1.2e-13 Score=112.63 Aligned_cols=113 Identities=16% Similarity=0.168 Sum_probs=87.5
Q ss_pred hCCCHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCe-E
Q 024415 108 WSENRDALVDLFGKVRDEWMDKDLTTWIGANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDR-I 183 (268)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~-i 183 (268)
.|++.+++......+.+... ...++||+.++| +++|++++|+|++....++..++. +|+...|.. +
T Consensus 65 ~g~~~~~l~~~~~~~~~~~~---------~~~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~-lg~~~~~~~~l 134 (202)
T TIGR01490 65 AGLLEEDVRAIVEEFVNQKI---------ESILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLARI-LGIDNAIGTRL 134 (202)
T ss_pred cCCCHHHHHHHHHHHHHHHH---------HHhccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHH-cCCcceEecce
Confidence 36666766555554444432 235889999999 689999999999999999999999 799877654 2
Q ss_pred Ee-------cC------CC-ChHHHHHHHHhcCCCCCCcEEEEecCccchhcccccccccCCeEE
Q 024415 184 YG-------LG------TG-PKVEVLKQLQKKPELQGMTLHFVEDRLATLKNVIKEPELDGWNLY 234 (268)
Q Consensus 184 ~~-------~~------~~-pk~~~~~~~~~~~~~~~~~~l~IGDs~~Di~~~~~~A~~aG~~~v 234 (268)
.. +. .+ +|...++++..+.++.++++++||||.+|+.+ ++.+|..++
T Consensus 135 ~~~~~g~~~g~~~~~~~~g~~K~~~l~~~~~~~~~~~~~~~~~gDs~~D~~~----~~~a~~~~~ 195 (202)
T TIGR01490 135 EESEDGIYTGNIDGNNCKGEGKVHALAELLAEEQIDLKDSYAYGDSISDLPL----LSLVGHPYV 195 (202)
T ss_pred EEcCCCEEeCCccCCCCCChHHHHHHHHHHHHcCCCHHHcEeeeCCcccHHH----HHhCCCcEE
Confidence 21 11 01 56788999988889999999999999999999 999997554
No 71
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=99.56 E-value=4.9e-15 Score=115.74 Aligned_cols=99 Identities=11% Similarity=0.038 Sum_probs=82.4
Q ss_pred HHHHcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecCCCChHHHHHHHHhcCCCCCCcEEEEecCccchhccccc
Q 024415 146 DALKFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGTGPKVEVLKQLQKKPELQGMTLHFVEDRLATLKNVIKE 225 (268)
Q Consensus 146 e~L~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~~~pk~~~~~~~~~~~~~~~~~~l~IGDs~~Di~~~~~~ 225 (268)
+.|+++|++++|+||++...+...++. +|+..+|+. .+|||++++.++.++++.+++|+||||+.+|+.+
T Consensus 38 ~~Lk~~G~~i~IvTn~~~~~~~~~l~~-~gi~~~~~~-----~~~k~~~~~~~~~~~~~~~~~~~~vGDs~~D~~~---- 107 (154)
T TIGR01670 38 RCALKSGIEVAIITGRKAKLVEDRCKT-LGITHLYQG-----QSNKLIAFSDILEKLALAPENVAYIGDDLIDWPV---- 107 (154)
T ss_pred HHHHHCCCEEEEEECCCCHHHHHHHHH-cCCCEEEec-----ccchHHHHHHHHHHcCCCHHHEEEECCCHHHHHH----
Confidence 555889999999999999999999999 798776652 3699999999999999999999999999999999
Q ss_pred ccccCCeEEEeecCCCCHHHHHhhcCCCCEEEcCHh
Q 024415 226 PELDGWNLYLGDWGYNTQKEREEAASIPRIQLLQLS 261 (268)
Q Consensus 226 A~~aG~~~v~v~~g~~~~~~~~~~~~~p~~~~~~~~ 261 (268)
++++|+. +++.++. .... ..|++++.+..
T Consensus 108 ~~~ag~~-~~v~~~~---~~~~---~~a~~i~~~~~ 136 (154)
T TIGR01670 108 MEKVGLS-VAVADAH---PLLI---PRADYVTRIAG 136 (154)
T ss_pred HHHCCCe-EecCCcC---HHHH---HhCCEEecCCC
Confidence 9999996 7776553 2333 34678777654
No 72
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=99.55 E-value=2.3e-14 Score=108.54 Aligned_cols=93 Identities=23% Similarity=0.216 Sum_probs=81.8
Q ss_pred CCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecCC--------------------CChHHHH
Q 024415 139 RFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGT--------------------GPKVEVL 195 (268)
Q Consensus 139 ~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~~--------------------~pk~~~~ 195 (268)
+++||+.++| +++|++++++||+....+...++. .|+..+++.+++... +|++..+
T Consensus 24 ~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (139)
T cd01427 24 ELYPGVKEALKELKEKGIKLALATNKSRREVLELLEE-LGLDDYFDPVITSNGAAIYYPKEGLFLGGGPFDIGKPNPDKL 102 (139)
T ss_pred CcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHH-cCCchhhhheeccchhhhhcccccccccccccccCCCCHHHH
Confidence 4677888887 578999999999999999999999 799888888876541 5789999
Q ss_pred HHHHhcCCCCCCcEEEEecCccchhcccccccccCCeEEEe
Q 024415 196 KQLQKKPELQGMTLHFVEDRLATLKNVIKEPELDGWNLYLG 236 (268)
Q Consensus 196 ~~~~~~~~~~~~~~l~IGDs~~Di~~~~~~A~~aG~~~v~v 236 (268)
+.+..+.+..++++++|||+.+|+.+ |+++|+.+++|
T Consensus 103 ~~~~~~~~~~~~~~~~igD~~~d~~~----~~~~g~~~i~v 139 (139)
T cd01427 103 LAALKLLGVDPEEVLMVGDSLNDIEM----AKAAGGLGVAV 139 (139)
T ss_pred HHHHHHcCCChhhEEEeCCCHHHHHH----HHHcCCceeeC
Confidence 99999999999999999999999999 99999998875
No 73
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.55 E-value=1.2e-14 Score=125.78 Aligned_cols=96 Identities=17% Similarity=0.055 Sum_probs=86.4
Q ss_pred CCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCC-CCCeEEecC----------C-CChHHHHHHHHhcCC
Q 024415 139 RFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTI-PPDRIYGLG----------T-GPKVEVLKQLQKKPE 203 (268)
Q Consensus 139 ~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~-~f~~i~~~~----------~-~pk~~~~~~~~~~~~ 203 (268)
.++||+.++| +++|++++++||++....+..++. +++.. +|+.+++.+ . +|+|+++...+.+.+
T Consensus 187 ~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l~~-l~~~~~~f~~i~~~~~~~~~~~~~~~~kp~p~~~~~~l~~~~ 265 (300)
T PHA02530 187 KPNPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTVEW-LRQTDIWFDDLIGRPPDMHFQREQGDKRPDDVVKEEIFWEKI 265 (300)
T ss_pred CCChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHHHH-HHHcCCchhhhhCCcchhhhcccCCCCCCcHHHHHHHHHHHh
Confidence 5788988888 688999999999999999999999 79986 899988876 2 489999999988877
Q ss_pred C-CCCcEEEEecCccchhcccccccccCCeEEEeecC
Q 024415 204 L-QGMTLHFVEDRLATLKNVIKEPELDGWNLYLGDWG 239 (268)
Q Consensus 204 ~-~~~~~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g 239 (268)
. .+++|+||||+..|+.+ |+++|+.+++|.||
T Consensus 266 ~~~~~~~~~vgD~~~d~~~----a~~~Gi~~i~v~~g 298 (300)
T PHA02530 266 APKYDVLLAVDDRDQVVDM----WRRIGLECWQVAPG 298 (300)
T ss_pred ccCceEEEEEcCcHHHHHH----HHHhCCeEEEecCC
Confidence 7 57999999999999999 99999999999987
No 74
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=99.53 E-value=2.6e-13 Score=108.20 Aligned_cols=89 Identities=19% Similarity=0.195 Sum_probs=73.0
Q ss_pred ccCCCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecC-------------C--C-ChHHHHH
Q 024415 136 GANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLG-------------T--G-PKVEVLK 196 (268)
Q Consensus 136 ~~~~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~-------------~--~-pk~~~~~ 196 (268)
...+++||+.++| +++|++++|+|++....++..++. +|+...+...+..+ . + +|+..++
T Consensus 70 ~~~~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~-~g~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~l~ 148 (177)
T TIGR01488 70 RQVALRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEK-LGIDDVFANRLEFDDNGLLTGPIEGQVNPEGECKGKVLK 148 (177)
T ss_pred hcCCcCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHH-cCCchheeeeEEECCCCEEeCccCCcccCCcchHHHHHH
Confidence 3456889999999 689999999999999999999999 79987665432221 1 1 5788999
Q ss_pred HHHhcCCCCCCcEEEEecCccchhccccccccc
Q 024415 197 QLQKKPELQGMTLHFVEDRLATLKNVIKEPELD 229 (268)
Q Consensus 197 ~~~~~~~~~~~~~l~IGDs~~Di~~~~~~A~~a 229 (268)
++..+.++.++++++||||.+|+.+ ++.+
T Consensus 149 ~~~~~~~~~~~~~~~iGDs~~D~~~----~~~a 177 (177)
T TIGR01488 149 ELLEESKITLKKIIAVGDSVNDLPM----LKLA 177 (177)
T ss_pred HHHHHhCCCHHHEEEEeCCHHHHHH----HhcC
Confidence 9888889999999999999999999 7653
No 75
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=99.53 E-value=3.5e-14 Score=114.14 Aligned_cols=103 Identities=15% Similarity=0.148 Sum_probs=82.4
Q ss_pred HHcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecCCCChHHHHHHHHhcCCCCCCcEEEEecCccchhccccccc
Q 024415 148 LKFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGTGPKVEVLKQLQKKPELQGMTLHFVEDRLATLKNVIKEPE 227 (268)
Q Consensus 148 L~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~~~pk~~~~~~~~~~~~~~~~~~l~IGDs~~Di~~~~~~A~ 227 (268)
|+++|++++|+||.+...+...++. +|+..+|+ ...+|++.++.+++++++.+++++||||+.+|+.+ |+
T Consensus 60 L~~~Gi~v~I~T~~~~~~v~~~l~~-lgl~~~f~-----g~~~k~~~l~~~~~~~gl~~~ev~~VGDs~~D~~~----a~ 129 (183)
T PRK09484 60 LLTSGIEVAIITGRKSKLVEDRMTT-LGITHLYQ-----GQSNKLIAFSDLLEKLAIAPEQVAYIGDDLIDWPV----ME 129 (183)
T ss_pred HHHCCCEEEEEeCCCcHHHHHHHHH-cCCceeec-----CCCcHHHHHHHHHHHhCCCHHHEEEECCCHHHHHH----HH
Confidence 4678999999999999999999999 79877665 22478999999999999999999999999999999 99
Q ss_pred ccCCeEEEeecCCCCHHHHHhhcCCCCEEEc------CHhHHHhhc
Q 024415 228 LDGWNLYLGDWGYNTQKEREEAASIPRIQLL------QLSDFSRKL 267 (268)
Q Consensus 228 ~aG~~~v~v~~g~~~~~~~~~~~~~p~~~~~------~~~~l~~~l 267 (268)
++|+.+ .+. +...+.. ..|++++. .+.++.++|
T Consensus 130 ~aG~~~-~v~----~~~~~~~--~~a~~v~~~~~g~g~~~el~~~i 168 (183)
T PRK09484 130 KVGLSV-AVA----DAHPLLL--PRADYVTRIAGGRGAVREVCDLL 168 (183)
T ss_pred HCCCeE-ecC----ChhHHHH--HhCCEEecCCCCCCHHHHHHHHH
Confidence 999984 443 2223322 24678885 577776543
No 76
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=99.53 E-value=1.3e-14 Score=114.48 Aligned_cols=96 Identities=18% Similarity=0.176 Sum_probs=79.7
Q ss_pred HHHHcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecCCCChHHHHHHHHhcCCCCCCcEEEEecCccchhccccc
Q 024415 146 DALKFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGTGPKVEVLKQLQKKPELQGMTLHFVEDRLATLKNVIKE 225 (268)
Q Consensus 146 e~L~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~~~pk~~~~~~~~~~~~~~~~~~l~IGDs~~Di~~~~~~ 225 (268)
..|+++|++++|+||++...++..++. +|+..+|+.+ +|||+.++.+..++++.++++++|||+.+|+.+
T Consensus 44 ~~L~~~Gi~laIiT~k~~~~~~~~l~~-lgi~~~f~~~-----kpkp~~~~~~~~~l~~~~~ev~~iGD~~nDi~~---- 113 (169)
T TIGR02726 44 IVLQLCGIDVAIITSKKSGAVRHRAEE-LKIKRFHEGI-----KKKTEPYAQMLEEMNISDAEVCYVGDDLVDLSM---- 113 (169)
T ss_pred HHHHHCCCEEEEEECCCcHHHHHHHHH-CCCcEEEecC-----CCCHHHHHHHHHHcCcCHHHEEEECCCHHHHHH----
Confidence 345788999999999999999999999 8998888743 699999999999999999999999999999999
Q ss_pred ccccCCeEEEeecCCCCHHHHHhhcCCCCEEEc
Q 024415 226 PELDGWNLYLGDWGYNTQKEREEAASIPRIQLL 258 (268)
Q Consensus 226 A~~aG~~~v~v~~g~~~~~~~~~~~~~p~~~~~ 258 (268)
++.+|+..+. . +....++.. ++++..
T Consensus 114 ~~~ag~~~am-~---nA~~~lk~~---A~~I~~ 139 (169)
T TIGR02726 114 MKRVGLAVAV-G---DAVADVKEA---AAYVTT 139 (169)
T ss_pred HHHCCCeEEC-c---CchHHHHHh---CCEEcC
Confidence 9999986554 2 334455542 445543
No 77
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=99.51 E-value=3.3e-13 Score=110.05 Aligned_cols=115 Identities=10% Similarity=0.100 Sum_probs=81.6
Q ss_pred ccCCCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCe--EE------ecC---CC-ChHHHHHHHHh
Q 024415 136 GANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDR--IY------GLG---TG-PKVEVLKQLQK 200 (268)
Q Consensus 136 ~~~~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~--i~------~~~---~~-pk~~~~~~~~~ 200 (268)
...+++||+.++| +++ .+++|+|++....+..+++. +|+..+|.. .+ ++. .+ +|...++.+..
T Consensus 65 ~~i~l~pga~ell~~lk~~-~~~~IVS~~~~~~~~~il~~-lgi~~~~an~l~~~~~g~~tG~~~~~~~~K~~~l~~l~~ 142 (203)
T TIGR02137 65 ATLKPLEGAVEFVDWLRER-FQVVILSDTFYEFSQPLMRQ-LGFPTLLCHKLEIDDSDRVVGYQLRQKDPKRQSVIAFKS 142 (203)
T ss_pred HhCCCCccHHHHHHHHHhC-CeEEEEeCChHHHHHHHHHH-cCCchhhceeeEEecCCeeECeeecCcchHHHHHHHHHh
Confidence 3457899999999 454 59999999999999999999 899887762 22 221 12 45666776643
Q ss_pred cCCCCCCcEEEEecCccchhcccccccccCCeEEEeecCCCCHHHHHhhcCCCCE-EEcCHhHHHhhc
Q 024415 201 KPELQGMTLHFVEDRLATLKNVIKEPELDGWNLYLGDWGYNTQKEREEAASIPRI-QLLQLSDFSRKL 267 (268)
Q Consensus 201 ~~~~~~~~~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~~~~p~~-~~~~~~~l~~~l 267 (268)
.+ .++++|||+.+|+.+ ++.+|...+. +.+..... .-|++ .+.+.++|...+
T Consensus 143 -~~---~~~v~vGDs~nDl~m----l~~Ag~~ia~-----~ak~~~~~--~~~~~~~~~~~~~~~~~~ 195 (203)
T TIGR02137 143 -LY---YRVIAAGDSYNDTTM----LSEAHAGILF-----HAPENVIR--EFPQFPAVHTYEDLKREF 195 (203)
T ss_pred -hC---CCEEEEeCCHHHHHH----HHhCCCCEEe-----cCCHHHHH--hCCCCCcccCHHHHHHHH
Confidence 33 268999999999999 9999986654 22333332 23555 567777776654
No 78
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=99.51 E-value=4.1e-14 Score=112.39 Aligned_cols=100 Identities=20% Similarity=0.247 Sum_probs=84.3
Q ss_pred CCCCCChHHHH---HcCCCeEEEEcCCC-HHHHHHHHHHhcCCCCCCCeEEecCCCChHHHHHHHHhcCCCCCCcEEEEe
Q 024415 138 NRFYPGIPDAL---KFASSRIYIVTTKQ-SRFADALLRELAGVTIPPDRIYGLGTGPKVEVLKQLQKKPELQGMTLHFVE 213 (268)
Q Consensus 138 ~~~~pg~~e~L---~~~g~~i~ivTn~~-~~~~~~~l~~~~gl~~~f~~i~~~~~~pk~~~~~~~~~~~~~~~~~~l~IG 213 (268)
..++||+.++| +++|++++|+||++ ...+...++. +|+..++ ...+|+|+++..++++.++.+++++|||
T Consensus 42 ~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~-~gl~~~~-----~~~KP~p~~~~~~l~~~~~~~~~~l~IG 115 (170)
T TIGR01668 42 NEAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKA-LGIPVLP-----HAVKPPGCAFRRAHPEMGLTSEQVAVVG 115 (170)
T ss_pred CCcChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHH-cCCEEEc-----CCCCCChHHHHHHHHHcCCCHHHEEEEC
Confidence 46899999998 68899999999998 5677777777 6764322 2347999999999999999999999999
Q ss_pred cCc-cchhcccccccccCCeEEEeecCCCCHHHHH
Q 024415 214 DRL-ATLKNVIKEPELDGWNLYLGDWGYNTQKERE 247 (268)
Q Consensus 214 Ds~-~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~ 247 (268)
|+. .|+.+ |+++|+.+|++.||+...+.+.
T Consensus 116 Ds~~~Di~a----A~~aGi~~i~v~~g~~~~~~~~ 146 (170)
T TIGR01668 116 DRLFTDVMG----GNRNGSYTILVEPLVHPDQWFI 146 (170)
T ss_pred CcchHHHHH----HHHcCCeEEEEccCcCCccccc
Confidence 998 79999 9999999999999986654443
No 79
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=99.51 E-value=2e-13 Score=115.09 Aligned_cols=71 Identities=13% Similarity=0.155 Sum_probs=63.4
Q ss_pred CChHHHHHHHHhcCCCCCCcEEEEecCc-cchhcccccccccCCeEEEeecCCCCHHHHHhhcCCCCEEEcCHhHH
Q 024415 189 GPKVEVLKQLQKKPELQGMTLHFVEDRL-ATLKNVIKEPELDGWNLYLGDWGYNTQKEREEAASIPRIQLLQLSDF 263 (268)
Q Consensus 189 ~pk~~~~~~~~~~~~~~~~~~l~IGDs~-~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~~~~p~~~~~~~~~l 263 (268)
||+|++++.+.+.++.++++++||||+. .|+.+ |+++|+.+++|.||+...+++......|++++.++.+|
T Consensus 178 KP~~~~~~~~~~~~~~~~~~~~~VGD~~~~Di~~----a~~~G~~~v~v~~G~~~~~~~~~~~~~pd~~v~~l~~~ 249 (249)
T TIGR01457 178 KPNAIIMEKAVEHLGTEREETLMVGDNYLTDIRA----GIDAGIDTLLVHTGVTKAEEVAGLPIAPTHVVSSLAEW 249 (249)
T ss_pred CChHHHHHHHHHHcCCCcccEEEECCCchhhHHH----HHHcCCcEEEEcCCCCCHHHHhcCCCCCCEEeCChhhC
Confidence 4779999999999999999999999996 89999 99999999999999887777766556799999998874
No 80
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=99.51 E-value=7e-13 Score=108.69 Aligned_cols=92 Identities=15% Similarity=0.187 Sum_probs=79.1
Q ss_pred CCCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecCC--------------CChHHHHHHHHh
Q 024415 138 NRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGT--------------GPKVEVLKQLQK 200 (268)
Q Consensus 138 ~~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~~--------------~pk~~~~~~~~~ 200 (268)
.+++||+.+++ +++|++++|+|++....++.+.+. +|++..+...+..++ ..|.+.++++..
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~-lg~d~~~an~l~~~dG~ltG~v~g~~~~~~~K~~~l~~~~~ 154 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAER-LGIDYVVANELEIDDGKLTGRVVGPICDGEGKAKALRELAA 154 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHH-hCCchheeeEEEEeCCEEeceeeeeecCcchHHHHHHHHHH
Confidence 67999999999 799999999999999999999999 799877765433221 147889999999
Q ss_pred cCCCCCCcEEEEecCccchhcccccccccCCeEE
Q 024415 201 KPELQGMTLHFVEDRLATLKNVIKEPELDGWNLY 234 (268)
Q Consensus 201 ~~~~~~~~~l~IGDs~~Di~~~~~~A~~aG~~~v 234 (268)
+.++.+++++++|||.+|+.+ -+.+|...+
T Consensus 155 ~~g~~~~~~~a~gDs~nDlpm----l~~ag~~ia 184 (212)
T COG0560 155 ELGIPLEETVAYGDSANDLPM----LEAAGLPIA 184 (212)
T ss_pred HcCCCHHHeEEEcCchhhHHH----HHhCCCCeE
Confidence 999999999999999999999 888996444
No 81
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=99.48 E-value=2.3e-13 Score=111.61 Aligned_cols=85 Identities=21% Similarity=0.300 Sum_probs=76.5
Q ss_pred CCCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecCC--CChHHHHHHHHhcCCCCCCcEEEE
Q 024415 138 NRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGT--GPKVEVLKQLQKKPELQGMTLHFV 212 (268)
Q Consensus 138 ~~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~~--~pk~~~~~~~~~~~~~~~~~~l~I 212 (268)
.+++||+.++| ++.|++++++||.....+....+. +|+ ++.++.+.. +|.+.++.++.+.++..+++|+||
T Consensus 126 d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~-lgi---~~~~v~a~~~~kP~~k~~~~~i~~l~~~~~~v~~v 201 (215)
T PF00702_consen 126 DPLRPGAKEALQELKEAGIKVAILTGDNESTASAIAKQ-LGI---FDSIVFARVIGKPEPKIFLRIIKELQVKPGEVAMV 201 (215)
T ss_dssp EEBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHH-TTS---CSEEEEESHETTTHHHHHHHHHHHHTCTGGGEEEE
T ss_pred CcchhhhhhhhhhhhccCcceeeeeccccccccccccc-ccc---ccccccccccccccchhHHHHHHHHhcCCCEEEEE
Confidence 37899999999 689999999999999999999999 798 555666665 799999999999999999999999
Q ss_pred ecCccchhcccccccccC
Q 024415 213 EDRLATLKNVIKEPELDG 230 (268)
Q Consensus 213 GDs~~Di~~~~~~A~~aG 230 (268)
||+.+|+.+ +++||
T Consensus 202 GDg~nD~~a----l~~Ag 215 (215)
T PF00702_consen 202 GDGVNDAPA----LKAAG 215 (215)
T ss_dssp ESSGGHHHH----HHHSS
T ss_pred ccCHHHHHH----HHhCc
Confidence 999999999 99886
No 82
>PRK10444 UMP phosphatase; Provisional
Probab=99.47 E-value=3e-14 Score=119.66 Aligned_cols=72 Identities=15% Similarity=0.117 Sum_probs=66.4
Q ss_pred CChHHHHHHHHhcCCCCCCcEEEEecCc-cchhcccccccccCCeEEEeecCCCCHHHHHhhcCCCCEEEcCHhHHH
Q 024415 189 GPKVEVLKQLQKKPELQGMTLHFVEDRL-ATLKNVIKEPELDGWNLYLGDWGYNTQKEREEAASIPRIQLLQLSDFS 264 (268)
Q Consensus 189 ~pk~~~~~~~~~~~~~~~~~~l~IGDs~-~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~~~~p~~~~~~~~~l~ 264 (268)
||+|++++.+.++.+.+|++++||||+. +|+.+ |+++|+.+++|.||.+..++++.....|++.+.++.+|.
T Consensus 174 KP~~~~~~~~~~~~~~~~~~~v~IGD~~~tDi~~----A~~~G~~~vlV~~G~~~~~~l~~~~~~pd~~~~sl~el~ 246 (248)
T PRK10444 174 KPSPWIIRAALNKMQAHSEETVIVGDNLRTDILA----GFQAGLETILVLSGVSTLDDIDSMPFRPSWIYPSVADID 246 (248)
T ss_pred CCCHHHHHHHHHHcCCCcccEEEECCCcHHHHHH----HHHcCCCEEEECCCCCCHHHHhcCCCCCCEEECCHHHhh
Confidence 5999999999999999999999999996 89999 999999999999999888888765568999999999984
No 83
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=99.41 E-value=1.6e-11 Score=101.40 Aligned_cols=109 Identities=15% Similarity=0.166 Sum_probs=87.5
Q ss_pred hccCCCCCChHHHHH-----cCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecCC--------------------C
Q 024415 135 IGANRFYPGIPDALK-----FASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGT--------------------G 189 (268)
Q Consensus 135 ~~~~~~~pg~~e~L~-----~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~~--------------------~ 189 (268)
....++.||+.++++ +.|+.++|+|.+..-+++..|++ .|+...|+.|++... +
T Consensus 67 l~~ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL~~-~gl~~~f~~I~TNpa~~~~~G~l~v~pyh~h~C~~C 145 (234)
T PF06888_consen 67 LRSIPIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETILEH-HGLRDCFSEIFTNPACFDADGRLRVRPYHSHGCSLC 145 (234)
T ss_pred HHcCCCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHHHh-CCCccccceEEeCCceecCCceEEEeCccCCCCCcC
Confidence 467789999999992 46999999999999999999999 899999998887531 1
Q ss_pred ----ChHHHHHHHHhc---CCCCCCcEEEEecCccchhcccccccccCC-eEEEeecCCCCHHHHHh
Q 024415 190 ----PKVEVLKQLQKK---PELQGMTLHFVEDRLATLKNVIKEPELDGW-NLYLGDWGYNTQKEREE 248 (268)
Q Consensus 190 ----pk~~~~~~~~~~---~~~~~~~~l~IGDs~~Di~~~~~~A~~aG~-~~v~v~~g~~~~~~~~~ 248 (268)
.|..+++++... .+....+++||||+.+|+-+ +.+.+- +.+....||.-.+.+.+
T Consensus 146 ~~NmCK~~il~~~~~~~~~~g~~~~rviYiGDG~nD~Cp----~~~L~~~D~v~~R~~~~l~~~i~~ 208 (234)
T PF06888_consen 146 PPNMCKGKILERLLQEQAQRGVPYDRVIYIGDGRNDFCP----ALRLRPRDVVFPRKGYPLHKLIQK 208 (234)
T ss_pred CCccchHHHHHHHHHHHhhcCCCcceEEEECCCCCCcCc----ccccCCCCEEecCCCChHHHHHhc
Confidence 257777777765 36778999999999999999 776554 66777778766655554
No 84
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=99.41 E-value=3e-13 Score=92.53 Aligned_cols=72 Identities=18% Similarity=0.174 Sum_probs=65.7
Q ss_pred CCChHHHHHHHHhcCCCCCCcEEEEecC-ccchhcccccccccCCeEEEeecCCCCHHHHHhhcCCCCEEEcCHhHH
Q 024415 188 TGPKVEVLKQLQKKPELQGMTLHFVEDR-LATLKNVIKEPELDGWNLYLGDWGYNTQKEREEAASIPRIQLLQLSDF 263 (268)
Q Consensus 188 ~~pk~~~~~~~~~~~~~~~~~~l~IGDs-~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~~~~p~~~~~~~~~l 263 (268)
.||+|.+++.+.+++++.+++++||||+ ..||.+ |+++|+.+|+|.+|....+++......|++++.++.|+
T Consensus 3 gKP~p~~~~~a~~~~~~~~~~~~~VGD~~~~Di~~----a~~~G~~~ilV~tG~~~~~~~~~~~~~pd~vv~~l~e~ 75 (75)
T PF13242_consen 3 GKPSPGMLEQALKRLGVDPSRCVMVGDSLETDIEA----AKAAGIDTILVLTGVYSPEDLEKAEHKPDYVVDDLKEA 75 (75)
T ss_dssp STTSHHHHHHHHHHHTSGGGGEEEEESSTTTHHHH----HHHTTSEEEEESSSSSCCCGHHHSSSTTSEEESSGGGH
T ss_pred CCCcHHHHHHHHHHcCCCHHHEEEEcCCcHhHHHH----HHHcCCcEEEECCCCCCHHHHhccCCCCCEEECCHHhC
Confidence 3699999999999999999999999999 899999 99999999999999877777765556899999999885
No 85
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=99.40 E-value=1.9e-12 Score=108.80 Aligned_cols=74 Identities=19% Similarity=0.256 Sum_probs=66.4
Q ss_pred ChHHHHHHHHhcCCCCCCcEEEEecCc-cchhcccccccccCCeEEEeecCCCCHHHHHhhcCCCCEEEcCHhHHHhhc
Q 024415 190 PKVEVLKQLQKKPELQGMTLHFVEDRL-ATLKNVIKEPELDGWNLYLGDWGYNTQKEREEAASIPRIQLLQLSDFSRKL 267 (268)
Q Consensus 190 pk~~~~~~~~~~~~~~~~~~l~IGDs~-~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~~~~p~~~~~~~~~l~~~l 267 (268)
|.+.+++.+.+..+..+++++||||+. +||.+ |+++||.+++|.+|....+++......|++++.|+.++...+
T Consensus 191 P~~~i~~~al~~~~~~~~~~~mVGD~~~TDI~~----a~~~G~~t~LV~TGv~~~~~~~~~~~~p~~v~~sl~~~~~~~ 265 (269)
T COG0647 191 PSPAIYEAALEKLGLDRSEVLMVGDRLDTDILG----AKAAGLDTLLVLTGVSSAEDLDRAEVKPTYVVDSLAELITAL 265 (269)
T ss_pred CCHHHHHHHHHHhCCCcccEEEEcCCchhhHHH----HHHcCCCEEEEccCCCChhhhhhhccCCcchHhhHHHHHhhh
Confidence 558899999999999999999999995 89999 999999999999998878887766678999999999987654
No 86
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=99.33 E-value=1.5e-11 Score=96.09 Aligned_cols=84 Identities=19% Similarity=0.325 Sum_probs=67.4
Q ss_pred hccCCCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCC--CCCe---------EEe-------cCCCChHH
Q 024415 135 IGANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTI--PPDR---------IYG-------LGTGPKVE 193 (268)
Q Consensus 135 ~~~~~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~--~f~~---------i~~-------~~~~pk~~ 193 (268)
....++.||++++. +++|..++++|++-+.++..+... +|+.. -+.. ..+ ++++.|++
T Consensus 84 ~~k~~lT~Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~-Lgi~~~n~yAN~l~fd~~Gk~~gfd~~~ptsdsggKa~ 162 (227)
T KOG1615|consen 84 KQKPTLTPGIRELVSRLHARGTQVYLISGGFRQLIEPVAEQ-LGIPKSNIYANELLFDKDGKYLGFDTNEPTSDSGGKAE 162 (227)
T ss_pred cCCCccCCCHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHH-hCCcHhhhhhheeeeccCCcccccccCCccccCCccHH
Confidence 34678999999998 799999999999999999999999 79863 1211 111 12247899
Q ss_pred HHHHHHhcCCCCCCcEEEEecCccchhc
Q 024415 194 VLKQLQKKPELQGMTLHFVEDRLATLKN 221 (268)
Q Consensus 194 ~~~~~~~~~~~~~~~~l~IGDs~~Di~~ 221 (268)
++..+.+ +...+.++||||+.+|+++
T Consensus 163 ~i~~lrk--~~~~~~~~mvGDGatDlea 188 (227)
T KOG1615|consen 163 VIALLRK--NYNYKTIVMVGDGATDLEA 188 (227)
T ss_pred HHHHHHh--CCChheeEEecCCcccccc
Confidence 9999988 6666788999999999999
No 87
>PRK11590 hypothetical protein; Provisional
Probab=99.33 E-value=3.3e-11 Score=99.10 Aligned_cols=90 Identities=8% Similarity=-0.026 Sum_probs=64.6
Q ss_pred CCCCCChHHHH----HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecC-----C----C------ChHHHHHHH
Q 024415 138 NRFYPGIPDAL----KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLG-----T----G------PKVEVLKQL 198 (268)
Q Consensus 138 ~~~~pg~~e~L----~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~-----~----~------pk~~~~~~~ 198 (268)
..++||+.++| +++|++++|+||++...++..+.. +|+.. .+.+++.+ + + -|...+++.
T Consensus 94 ~~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~~-l~~~~-~~~~i~t~l~~~~tg~~~g~~c~g~~K~~~l~~~ 171 (211)
T PRK11590 94 VTAFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVYFD-TPWLP-RVNLIASQMQRRYGGWVLTLRCLGHEKVAQLERK 171 (211)
T ss_pred CcCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHH-ccccc-cCceEEEEEEEEEccEECCccCCChHHHHHHHHH
Confidence 56799999999 257999999999999999999999 78632 44455443 1 1 234444433
Q ss_pred HhcCCCCCCcEEEEecCccchhcccccccccCCeEEEee
Q 024415 199 QKKPELQGMTLHFVEDRLATLKNVIKEPELDGWNLYLGD 237 (268)
Q Consensus 199 ~~~~~~~~~~~l~IGDs~~Di~~~~~~A~~aG~~~v~v~ 237 (268)
. +.+...+.+-|||.+|+.+ -..+|- +++|+
T Consensus 172 ~---~~~~~~~~aY~Ds~~D~pm----L~~a~~-~~~vn 202 (211)
T PRK11590 172 I---GTPLRLYSGYSDSKQDNPL----LYFCQH-RWRVT 202 (211)
T ss_pred h---CCCcceEEEecCCcccHHH----HHhCCC-CEEEC
Confidence 3 3455566899999999999 888884 55554
No 88
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=99.30 E-value=2.9e-11 Score=92.60 Aligned_cols=80 Identities=16% Similarity=0.150 Sum_probs=71.4
Q ss_pred HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecCCCChHHHHHHHHhcCCCCCCcEEEEecCc-cchhccccccc
Q 024415 149 KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGTGPKVEVLKQLQKKPELQGMTLHFVEDRL-ATLKNVIKEPE 227 (268)
Q Consensus 149 ~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~~~pk~~~~~~~~~~~~~~~~~~l~IGDs~-~Di~~~~~~A~ 227 (268)
+..|+++.|+||+...-+....++ +|+. .+....||.+..+++++++.++++++|+||||.. .|+.+ |+
T Consensus 59 k~~gi~v~vvSNn~e~RV~~~~~~-l~v~-----fi~~A~KP~~~~fr~Al~~m~l~~~~vvmVGDqL~TDVlg----gn 128 (175)
T COG2179 59 KEAGIKVVVVSNNKESRVARAAEK-LGVP-----FIYRAKKPFGRAFRRALKEMNLPPEEVVMVGDQLFTDVLG----GN 128 (175)
T ss_pred HhcCCEEEEEeCCCHHHHHhhhhh-cCCc-----eeecccCccHHHHHHHHHHcCCChhHEEEEcchhhhhhhc----cc
Confidence 789999999999999999999999 7874 2333446999999999999999999999999995 79999 99
Q ss_pred ccCCeEEEeec
Q 024415 228 LDGWNLYLGDW 238 (268)
Q Consensus 228 ~aG~~~v~v~~ 238 (268)
.+|+.+|.|..
T Consensus 129 r~G~~tIlV~P 139 (175)
T COG2179 129 RAGMRTILVEP 139 (175)
T ss_pred ccCcEEEEEEE
Confidence 99999999864
No 89
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=99.29 E-value=4.8e-12 Score=110.54 Aligned_cols=87 Identities=17% Similarity=0.135 Sum_probs=74.8
Q ss_pred CCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHH---hcCCCCCCCeEEecCCCChHHHHHHHHhcCCCCCCcEEEEe
Q 024415 140 FYPGIPDAL---KFASSRIYIVTTKQSRFADALLRE---LAGVTIPPDRIYGLGTGPKVEVLKQLQKKPELQGMTLHFVE 213 (268)
Q Consensus 140 ~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~---~~gl~~~f~~i~~~~~~pk~~~~~~~~~~~~~~~~~~l~IG 213 (268)
++||+.++| +++|+.++|+||++...+...+++ |+++..+|+.+.++ .+|||+.+..+.+++++.+++++|||
T Consensus 32 ~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l~~~~~~~~~~~~f~~~~~~-~~pk~~~i~~~~~~l~i~~~~~vfid 110 (320)
T TIGR01686 32 LHKTLQEKIKTLKKQGFLLALASKNDEDDAKKVFERRKDFILQAEDFDARSIN-WGPKSESLRKIAKKLNLGTDSFLFID 110 (320)
T ss_pred cHHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHhCccccCcHHHeeEEEEe-cCchHHHHHHHHHHhCCCcCcEEEEC
Confidence 356666666 689999999999999999999987 33777888887665 35999999999999999999999999
Q ss_pred cCccchhcccccccccCC
Q 024415 214 DRLATLKNVIKEPELDGW 231 (268)
Q Consensus 214 Ds~~Di~~~~~~A~~aG~ 231 (268)
|++.|+.+ +++++-
T Consensus 111 D~~~d~~~----~~~~lp 124 (320)
T TIGR01686 111 DNPAERAN----VKITLP 124 (320)
T ss_pred CCHHHHHH----HHHHCC
Confidence 99999999 777665
No 90
>PLN02645 phosphoglycolate phosphatase
Probab=99.29 E-value=1.5e-12 Score=113.20 Aligned_cols=114 Identities=18% Similarity=0.136 Sum_probs=90.0
Q ss_pred cCCCeEEEEcCCCHHH-HHHHHHHhcCCCCCCCeEEecCC-------CChHHHHHHHHhcCCCCCCcEEEEecCc-cchh
Q 024415 150 FASSRIYIVTTKQSRF-ADALLRELAGVTIPPDRIYGLGT-------GPKVEVLKQLQKKPELQGMTLHFVEDRL-ATLK 220 (268)
Q Consensus 150 ~~g~~i~ivTn~~~~~-~~~~l~~~~gl~~~f~~i~~~~~-------~pk~~~~~~~~~~~~~~~~~~l~IGDs~-~Di~ 220 (268)
.++-..+|+||.+... ....+.. .|...+|+.+.+... ||+|.+++.+.++++.++++++||||+. +|+.
T Consensus 184 ~~~g~~~i~tn~d~~~~~~~~~~~-~g~g~~~~~i~~~~~~~~~~~gKP~p~~~~~a~~~~~~~~~~~~~VGD~~~~Di~ 262 (311)
T PLN02645 184 ENPGCLFIATNRDAVTHLTDAQEW-AGAGSMVGAIKGSTEREPLVVGKPSTFMMDYLANKFGIEKSQICMVGDRLDTDIL 262 (311)
T ss_pred cCCCCEEEEeCCCCCCCCCCCCCc-cchHHHHHHHHHHhCCCcccCCCChHHHHHHHHHHcCCCcccEEEEcCCcHHHHH
Confidence 3345789999988643 2233344 466666776654331 5999999999999999999999999997 8999
Q ss_pred cccccccccCCeEEEeecCCCCHHHHHhh--cCCCCEEEcCHhHHHhhcC
Q 024415 221 NVIKEPELDGWNLYLGDWGYNTQKEREEA--ASIPRIQLLQLSDFSRKLK 268 (268)
Q Consensus 221 ~~~~~A~~aG~~~v~v~~g~~~~~~~~~~--~~~p~~~~~~~~~l~~~l~ 268 (268)
+ |+++|+.+++|.||++..+++... ...|++.+.++.+|.++++
T Consensus 263 ~----A~~aG~~~ilV~~G~~~~~~~~~~~~~~~pd~~~~~~~~l~~~~~ 308 (311)
T PLN02645 263 F----GQNGGCKTLLVLSGVTSESMLLSPENKIQPDFYTSKISDFLTLKA 308 (311)
T ss_pred H----HHHcCCCEEEEcCCCCCHHHHHhccCCCCCCEEECCHHHHHHHhh
Confidence 9 999999999999999887777542 3579999999999988764
No 91
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=99.28 E-value=3.4e-10 Score=95.56 Aligned_cols=118 Identities=12% Similarity=0.146 Sum_probs=88.5
Q ss_pred HHhhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCChHHHH---HcCCCeEEEEcCCCHHHHHHH
Q 024415 93 ILENWSKIKPVIMEDWSENRDALVDLFGKVRDEWMDKDLTTWIGANRFYPGIPDAL---KFASSRIYIVTTKQSRFADAL 169 (268)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~ 169 (268)
+..+|+.....++..++++.+.+... .. ....++.||+.+++ +++|++++|+|++....++.+
T Consensus 89 ~m~eWw~k~~~l~~~~~~~~e~i~~~-------v~-------~~~l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~v 154 (277)
T TIGR01544 89 YMVEWWTKSHGLLVQQAFPKAKIKEI-------VA-------ESDVMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEV 154 (277)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHH-------Hh-------hcCCccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHH
Confidence 45677777777778777776663221 11 13568999999999 699999999999999999999
Q ss_pred HHHhcCCCCCCCeEEe------cCC---C-ChH---------HHHHHHHhcCC--CCCCcEEEEecCccchhcccccccc
Q 024415 170 LRELAGVTIPPDRIYG------LGT---G-PKV---------EVLKQLQKKPE--LQGMTLHFVEDRLATLKNVIKEPEL 228 (268)
Q Consensus 170 l~~~~gl~~~f~~i~~------~~~---~-pk~---------~~~~~~~~~~~--~~~~~~l~IGDs~~Di~~~~~~A~~ 228 (268)
++. .|+...+..|++ .+. | |.| .+++.....++ ..+++||+||||.+|+.| |..
T Consensus 155 L~~-lgl~~~~~~IvSN~L~f~~dGvltG~~~P~i~~~~K~~~v~~~~~~~~~~~~~~~~vI~vGDs~~Dl~m----a~g 229 (277)
T TIGR01544 155 LRQ-AGVYHPNVKVVSNFMDFDEDGVLKGFKGPLIHTFNKNHDVALRNTEYFNQLKDRSNIILLGDSQGDLRM----ADG 229 (277)
T ss_pred HHH-cCCCCcCceEEeeeEEECCCCeEeCCCCCcccccccHHHHHHHHHHHhCccCCcceEEEECcChhhhhH----hcC
Confidence 999 798767766632 221 2 333 44555666666 788999999999999999 776
Q ss_pred c
Q 024415 229 D 229 (268)
Q Consensus 229 a 229 (268)
.
T Consensus 230 ~ 230 (277)
T TIGR01544 230 V 230 (277)
T ss_pred C
Confidence 6
No 92
>PRK08238 hypothetical protein; Validated
Probab=99.28 E-value=7.2e-11 Score=107.73 Aligned_cols=91 Identities=14% Similarity=0.144 Sum_probs=73.4
Q ss_pred cCCCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecCC----C--ChHHHHHHHHhcCCCCCC
Q 024415 137 ANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGT----G--PKVEVLKQLQKKPELQGM 207 (268)
Q Consensus 137 ~~~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~~----~--pk~~~~~~~~~~~~~~~~ 207 (268)
..+++||+.+.| +++|++++++||+++..++..+++ +|+ ||.+++++. + ||++.+. +.++ .+
T Consensus 70 ~lp~~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~-lGl---Fd~Vigsd~~~~~kg~~K~~~l~---~~l~--~~ 140 (479)
T PRK08238 70 TLPYNEEVLDYLRAERAAGRKLVLATASDERLAQAVAAH-LGL---FDGVFASDGTTNLKGAAKAAALV---EAFG--ER 140 (479)
T ss_pred hCCCChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHH-cCC---CCEEEeCCCccccCCchHHHHHH---HHhC--cc
Confidence 346889999999 699999999999999999999999 787 899998874 2 3455444 2222 24
Q ss_pred cEEEEecCccchhcccccccccCCeEEEeecCCC
Q 024415 208 TLHFVEDRLATLKNVIKEPELDGWNLYLGDWGYN 241 (268)
Q Consensus 208 ~~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~ 241 (268)
+++|+|||.+|+.+ ++.+| ++++|+.+..
T Consensus 141 ~~~yvGDS~~Dlp~----~~~A~-~av~Vn~~~~ 169 (479)
T PRK08238 141 GFDYAGNSAADLPV----WAAAR-RAIVVGASPG 169 (479)
T ss_pred CeeEecCCHHHHHH----HHhCC-CeEEECCCHH
Confidence 57999999999999 99999 7888876643
No 93
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=99.27 E-value=1.6e-11 Score=112.57 Aligned_cols=85 Identities=24% Similarity=0.392 Sum_probs=70.6
Q ss_pred CCCChHHHH---HcCCCeEEEEcCCCH------------HHHHHHHHHhcCCCCCCCeEEecCC----CChHHHHHHHHh
Q 024415 140 FYPGIPDAL---KFASSRIYIVTTKQS------------RFADALLRELAGVTIPPDRIYGLGT----GPKVEVLKQLQK 200 (268)
Q Consensus 140 ~~pg~~e~L---~~~g~~i~ivTn~~~------------~~~~~~l~~~~gl~~~f~~i~~~~~----~pk~~~~~~~~~ 200 (268)
++||+.+.| +++||+++|+||... ..+..+++. +|+ .|+.+++.+. ||+|.++..+.+
T Consensus 198 l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~~iL~~-lgi--pfdviia~~~~~~RKP~pGm~~~a~~ 274 (526)
T TIGR01663 198 IFPEIPEKLKELEADGFKICIFTNQGGIARGKINADDFKAKIEAIVAK-LGV--PFQVFIAIGAGFYRKPLTGMWDHLKE 274 (526)
T ss_pred cccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHHHHHHHHHHHHH-cCC--ceEEEEeCCCCCCCCCCHHHHHHHHH
Confidence 578999988 699999999999776 457778888 687 4888887754 599999999998
Q ss_pred cCC----CCCCcEEEEecCccchhcccccccccCC
Q 024415 201 KPE----LQGMTLHFVEDRLATLKNVIKEPELDGW 231 (268)
Q Consensus 201 ~~~----~~~~~~l~IGDs~~Di~~~~~~A~~aG~ 231 (268)
+++ +.+++++||||+..|+++ |+++|-
T Consensus 275 ~~~~~~~Id~~~S~~VGDaagr~~~----g~~ag~ 305 (526)
T TIGR01663 275 EANDGTEIQEDDCFFVGDAAGRPAN----GKAAGK 305 (526)
T ss_pred hcCcccCCCHHHeEEeCCcccchHH----HHhcCC
Confidence 874 889999999999999887 666654
No 94
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=99.24 E-value=1e-11 Score=96.40 Aligned_cols=91 Identities=12% Similarity=-0.037 Sum_probs=76.9
Q ss_pred cCCCCCChHHHHH--cCCCeEEEEcCCCHHHHHHHHHHhcCCCC-CCCeEEecCCC--ChHHHHHHHHhcCCCCCCcEEE
Q 024415 137 ANRFYPGIPDALK--FASSRIYIVTTKQSRFADALLRELAGVTI-PPDRIYGLGTG--PKVEVLKQLQKKPELQGMTLHF 211 (268)
Q Consensus 137 ~~~~~pg~~e~L~--~~g~~i~ivTn~~~~~~~~~l~~~~gl~~-~f~~i~~~~~~--pk~~~~~~~~~~~~~~~~~~l~ 211 (268)
...++||+.++|+ +++++++|+||+....++..+++ +++.. +|+.|+++++. .||. +.+..++++..|++|++
T Consensus 43 ~v~l~pG~~e~L~~L~~~~~l~I~Ts~~~~~~~~il~~-l~~~~~~f~~i~~~~d~~~~KP~-~~k~l~~l~~~p~~~i~ 120 (148)
T smart00577 43 YVKKRPGVDEFLKRASELFELVVFTAGLRMYADPVLDL-LDPKKYFGYRRLFRDECVFVKGK-YVKDLSLLGRDLSNVII 120 (148)
T ss_pred EEEECCCHHHHHHHHHhccEEEEEeCCcHHHHHHHHHH-hCcCCCEeeeEEECccccccCCe-EeecHHHcCCChhcEEE
Confidence 4468999999992 46799999999999999999999 79864 56999988763 4555 66667788999999999
Q ss_pred EecCccchhcccccccccCCeE
Q 024415 212 VEDRLATLKNVIKEPELDGWNL 233 (268)
Q Consensus 212 IGDs~~Di~~~~~~A~~aG~~~ 233 (268)
|||+..|+.+ |+++|+..
T Consensus 121 i~Ds~~~~~a----a~~ngI~i 138 (148)
T smart00577 121 IDDSPDSWPF----HPENLIPI 138 (148)
T ss_pred EECCHHHhhc----CccCEEEe
Confidence 9999999999 99999844
No 95
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=99.19 E-value=1.8e-09 Score=88.53 Aligned_cols=111 Identities=12% Similarity=0.054 Sum_probs=72.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCChHHHH----HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEE
Q 024415 109 SENRDALVDLFGKVRDEWMDKDLTTWIGANRFYPGIPDAL----KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIY 184 (268)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~e~L----~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~ 184 (268)
|.+.+++.+....+.+.+. ....++||+.++| +++|++++||||++...++.+.+. .++..- +.++
T Consensus 72 g~~~~~l~~~~~~f~~~~~--------~~~~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~-~~~~~~-~~~i 141 (210)
T TIGR01545 72 GHREAHLQDLEADFVAAFR--------DKVTAFPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFD-SNFIHR-LNLI 141 (210)
T ss_pred CCCHHHHHHHHHHHHHHHH--------HhCCCCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHh-cccccc-CcEE
Confidence 5555555554444444442 2346899999999 247999999999999999999987 565332 3333
Q ss_pred ecC----C-----C------ChHHHHHHHHhcCCCCCCcEEEEecCccchhcccccccccCCeEEEee
Q 024415 185 GLG----T-----G------PKVEVLKQLQKKPELQGMTLHFVEDRLATLKNVIKEPELDGWNLYLGD 237 (268)
Q Consensus 185 ~~~----~-----~------pk~~~~~~~~~~~~~~~~~~l~IGDs~~Di~~~~~~A~~aG~~~v~v~ 237 (268)
+.+ . + -|...+++.. +.....+.+-|||.+|+.+ -..+|- +++|+
T Consensus 142 ~t~le~~~gg~~~g~~c~g~~Kv~rl~~~~---~~~~~~~~aYsDS~~D~pm----L~~a~~-~~~Vn 201 (210)
T TIGR01545 142 ASQIERGNGGWVLPLRCLGHEKVAQLEQKI---GSPLKLYSGYSDSKQDNPL----LAFCEH-RWRVS 201 (210)
T ss_pred EEEeEEeCCceEcCccCCChHHHHHHHHHh---CCChhheEEecCCcccHHH----HHhCCC-cEEEC
Confidence 332 1 1 2344444333 3344566899999999999 888885 44453
No 96
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=99.16 E-value=7.6e-11 Score=92.58 Aligned_cols=106 Identities=20% Similarity=0.273 Sum_probs=73.2
Q ss_pred ccCCCCCChHHHH---HcCCCeEEEEc-CCCHHHHHHHHHHhcCCC----------CCCCeEEecCCCChHHHHHHHHhc
Q 024415 136 GANRFYPGIPDAL---KFASSRIYIVT-TKQSRFADALLRELAGVT----------IPPDRIYGLGTGPKVEVLKQLQKK 201 (268)
Q Consensus 136 ~~~~~~pg~~e~L---~~~g~~i~ivT-n~~~~~~~~~l~~~~gl~----------~~f~~i~~~~~~pk~~~~~~~~~~ 201 (268)
....+||++.++| +.+|++++++| +...+.++.+|+. +++. .+|+.. .--.++|..-++.+.++
T Consensus 42 ~~v~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~~-l~i~~~~~~~~~~~~~F~~~-eI~~gsK~~Hf~~i~~~ 119 (169)
T PF12689_consen 42 EEVSLYPDVPEILQELKERGVKLAVASRTDEPDWARELLKL-LEIDDADGDGVPLIEYFDYL-EIYPGSKTTHFRRIHRK 119 (169)
T ss_dssp -EE---TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHHH-TT-C----------CCECEE-EESSS-HHHHHHHHHHH
T ss_pred CEEEeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHHh-cCCCccccccccchhhcchh-heecCchHHHHHHHHHh
Confidence 3457999999999 68999999999 5667789999999 7998 777662 22234899999999999
Q ss_pred CCCCCCcEEEEecCccchhcccccccccCCeEEEeecCCCCHHHHHh
Q 024415 202 PELQGMTLHFVEDRLATLKNVIKEPELDGWNLYLGDWGYNTQKEREE 248 (268)
Q Consensus 202 ~~~~~~~~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~ 248 (268)
.++..++++|++|...++.. ....|+.++.+-.|- +.+.+++
T Consensus 120 tgI~y~eMlFFDDe~~N~~~----v~~lGV~~v~v~~Gl-t~~~~~~ 161 (169)
T PF12689_consen 120 TGIPYEEMLFFDDESRNIEV----VSKLGVTCVLVPDGL-TWDEFER 161 (169)
T ss_dssp H---GGGEEEEES-HHHHHH----HHTTT-EEEE-SSS---HHHHHH
T ss_pred cCCChhHEEEecCchhccee----eEecCcEEEEeCCCC-CHHHHHH
Confidence 99999999999999999999 788999999998874 5555543
No 97
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=99.11 E-value=2.6e-10 Score=88.27 Aligned_cols=119 Identities=13% Similarity=0.127 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhccCCCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhc---CCCCCCCeEEecCCC
Q 024415 116 VDLFGKVRDEWMDKDLTTWIGANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELA---GVTIPPDRIYGLGTG 189 (268)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~---gl~~~f~~i~~~~~~ 189 (268)
...++.++-..++...+.-.-..++||++.+.| ++.|.+++|.|+++-..++..... . .|..+|+..+....|
T Consensus 80 ~t~lK~lQG~iWa~Gy~sgelkahlypDav~~ik~wk~~g~~vyiYSSGSV~AQkL~Fgh-s~agdL~~lfsGyfDttiG 158 (229)
T COG4229 80 DTPLKALQGMIWAHGYESGELKAHLYPDAVQAIKRWKALGMRVYIYSSGSVKAQKLFFGH-SDAGDLNSLFSGYFDTTIG 158 (229)
T ss_pred cchHHHHHhHHHHhccccCccccccCHhHHHHHHHHHHcCCcEEEEcCCCchhHHHhhcc-cccccHHhhhcceeecccc
Confidence 344566666676666555455568999999999 699999999999988777666553 2 344566666655555
Q ss_pred Ch--HHHHHHHHhcCCCCCCcEEEEecCccchhcccccccccCCeEEEeecC
Q 024415 190 PK--VEVLKQLQKKPELQGMTLHFVEDRLATLKNVIKEPELDGWNLYLGDWG 239 (268)
Q Consensus 190 pk--~~~~~~~~~~~~~~~~~~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g 239 (268)
+| ..-+.++....|++|.+++|+.|.+..+.+ |+.+|+.++++.+.
T Consensus 159 ~KrE~~SY~kIa~~iGl~p~eilFLSDn~~EL~A----A~~vGl~t~l~~R~ 206 (229)
T COG4229 159 KKRESQSYAKIAGDIGLPPAEILFLSDNPEELKA----AAGVGLATGLAVRP 206 (229)
T ss_pred ccccchhHHHHHHhcCCCchheEEecCCHHHHHH----HHhcchheeeeecC
Confidence 55 456788889999999999999999999999 99999999988765
No 98
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=99.09 E-value=3.5e-10 Score=98.39 Aligned_cols=100 Identities=19% Similarity=0.195 Sum_probs=83.8
Q ss_pred hccCCCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcC-------CCCCCCeEEecCCCCh-------------
Q 024415 135 IGANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAG-------VTIPPDRIYGLGTGPK------------- 191 (268)
Q Consensus 135 ~~~~~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~g-------l~~~f~~i~~~~~~pk------------- 191 (268)
.......||+.++| +++|++++|+||++...++..++.++| +..+||.|+++..||.
T Consensus 180 ~~yv~~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l~g~~~~~~~w~~yFD~IIt~a~KP~FF~~~~pf~~v~~ 259 (343)
T TIGR02244 180 EKYVLRDPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYLLGPFLGEHDWRDYFDVVIVDARKPGFFTEGRPFRQVDV 259 (343)
T ss_pred HHHhccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhhCCcccccchHhhCcEEEeCCCCCcccCCCCceEEEeC
Confidence 44456799999999 689999999999999999999999337 8899999999886552
Q ss_pred ---------H-----------HHHHHHHhcCCCCCCcEEEEecCc-cchhccccccc-ccCCeEEEeec
Q 024415 192 ---------V-----------EVLKQLQKKPELQGMTLHFVEDRL-ATLKNVIKEPE-LDGWNLYLGDW 238 (268)
Q Consensus 192 ---------~-----------~~~~~~~~~~~~~~~~~l~IGDs~-~Di~~~~~~A~-~aG~~~v~v~~ 238 (268)
. --+..+.+..+..+++++||||+. .|+.+ |+ .+||.+++|..
T Consensus 260 ~~g~~~~~~~~~l~~g~vY~gGn~~~~~~~l~~~~~~vlYvGD~i~~Di~~----~kk~~Gw~TvlI~p 324 (343)
T TIGR02244 260 ETGSLKWGEVDGLEPGKVYSGGSLKQFHELLKWRGKEVLYFGDHIYGDLLR----SKKKRGWRTAAIIP 324 (343)
T ss_pred CCCcccCCccccccCCCeEeCCCHHHHHHHHCCCCCcEEEECCcchHHHHh----hHHhcCcEEEEEch
Confidence 0 123666777788999999999995 79999 88 99999999975
No 99
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=99.08 E-value=8.6e-11 Score=88.94 Aligned_cols=79 Identities=22% Similarity=0.273 Sum_probs=69.2
Q ss_pred HHHHcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecCCCChHHHHHHHHhcCCCCCCcEEEEecCccchhccccc
Q 024415 146 DALKFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGTGPKVEVLKQLQKKPELQGMTLHFVEDRLATLKNVIKE 225 (268)
Q Consensus 146 e~L~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~~~pk~~~~~~~~~~~~~~~~~~l~IGDs~~Di~~~~~~ 225 (268)
..|...|++++|+|+.....++...+. +|+...|..+ ..|..+++.+..++++++++|.||||...|+..
T Consensus 45 k~l~~~Gi~vAIITGr~s~ive~Ra~~-LGI~~~~qG~-----~dK~~a~~~L~~~~~l~~e~~ayiGDD~~Dlpv---- 114 (170)
T COG1778 45 KLLLKSGIKVAIITGRDSPIVEKRAKD-LGIKHLYQGI-----SDKLAAFEELLKKLNLDPEEVAYVGDDLVDLPV---- 114 (170)
T ss_pred HHHHHcCCeEEEEeCCCCHHHHHHHHH-cCCceeeech-----HhHHHHHHHHHHHhCCCHHHhhhhcCccccHHH----
Confidence 344688999999999999999999999 8997655321 268999999999999999999999999999999
Q ss_pred ccccCCeEE
Q 024415 226 PELDGWNLY 234 (268)
Q Consensus 226 A~~aG~~~v 234 (268)
.+++|.+++
T Consensus 115 m~~vGls~a 123 (170)
T COG1778 115 MEKVGLSVA 123 (170)
T ss_pred HHHcCCccc
Confidence 999998665
No 100
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=99.06 E-value=3.2e-09 Score=90.52 Aligned_cols=109 Identities=13% Similarity=0.069 Sum_probs=69.1
Q ss_pred CCCChHHHH---HcCCCeEEEEcCCC-----HHHHHHHHHHhcCCCC---CCCeEEec-CCCChHHHHHHHHhcCCCCCC
Q 024415 140 FYPGIPDAL---KFASSRIYIVTTKQ-----SRFADALLRELAGVTI---PPDRIYGL-GTGPKVEVLKQLQKKPELQGM 207 (268)
Q Consensus 140 ~~pg~~e~L---~~~g~~i~ivTn~~-----~~~~~~~l~~~~gl~~---~f~~i~~~-~~~pk~~~~~~~~~~~~~~~~ 207 (268)
.++++.+++ +..+..+.++|+.+ ....+...+. +++.. .+..+-.. ....|+.+++.+++.++++++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~ei~~~~~~K~~~l~~l~~~~gi~~~ 216 (272)
T PRK10530 138 TFTQVDSLAQAARQVNAIWKFALTHEDLPQLQHFAKHVEHE-LGLECEWSWHDQVDIARKGNSKGKRLTQWVEAQGWSMK 216 (272)
T ss_pred ceEEcccHHHHHhhcCCcEEEEEecCCHHHHHHHHHHHhhh-cCceEEEecCceEEEecCCCChHHHHHHHHHHcCCCHH
Confidence 345555554 45566666777644 2233344444 45431 11222111 122789999999999999999
Q ss_pred cEEEEecCccchhcccccccccCCeEEEeecCCCCHHHHHhhcCCCCEEEcCH
Q 024415 208 TLHFVEDRLATLKNVIKEPELDGWNLYLGDWGYNTQKEREEAASIPRIQLLQL 260 (268)
Q Consensus 208 ~~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~~~~p~~~~~~~ 260 (268)
++++|||+.+|+.+ ++.+|+ .+.+| +..++++. .+++++.+-
T Consensus 217 e~i~~GD~~NDi~m----~~~ag~---~vamg-na~~~lk~---~Ad~v~~~n 258 (272)
T PRK10530 217 NVVAFGDNFNDISM----LEAAGL---GVAMG-NADDAVKA---RADLVIGDN 258 (272)
T ss_pred HeEEeCCChhhHHH----HHhcCc---eEEec-CchHHHHH---hCCEEEecC
Confidence 99999999999999 999997 33445 34456654 466776553
No 101
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=99.03 E-value=1.2e-09 Score=86.35 Aligned_cols=117 Identities=24% Similarity=0.247 Sum_probs=87.8
Q ss_pred CCCCChHHHH---HcCCCeEEEEcCCC---------------HHHHHHHHHHhcCCCCCCCeEEec---------CCCCh
Q 024415 139 RFYPGIPDAL---KFASSRIYIVTTKQ---------------SRFADALLRELAGVTIPPDRIYGL---------GTGPK 191 (268)
Q Consensus 139 ~~~pg~~e~L---~~~g~~i~ivTn~~---------------~~~~~~~l~~~~gl~~~f~~i~~~---------~~~pk 191 (268)
.+.||+.+.| ++.||+++++||.+ .......++. .|+ .|+.|+.. +.||+
T Consensus 31 ~~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~l~~-~gv--~id~i~~Cph~p~~~c~cRKP~ 107 (181)
T COG0241 31 QFIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFDKLHNKMLKILAS-QGV--KIDGILYCPHHPEDNCDCRKPK 107 (181)
T ss_pred ccCccHHHHHHHHHhCCCeEEEEECCCCccccCccHHHHHHHHHHHHHHHHH-cCC--ccceEEECCCCCCCCCcccCCC
Confidence 3779999988 69999999999932 2234445555 465 46666532 23699
Q ss_pred HHHHHHHHhcCCCCCCcEEEEecCccchhcccccccccCCeEEEeecCCCCHHHHHhhcCCCCEEEcCHhHHHh
Q 024415 192 VEVLKQLQKKPELQGMTLHFVEDRLATLKNVIKEPELDGWNLYLGDWGYNTQKEREEAASIPRIQLLQLSDFSR 265 (268)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~~~~p~~~~~~~~~l~~ 265 (268)
+.+++.+++++++++.+.++|||+.+|+++ |.++|+..+.+.+|......... ..+..+.++.++..
T Consensus 108 ~gm~~~~~~~~~iD~~~s~~VGD~~~Dlq~----a~n~gi~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 174 (181)
T COG0241 108 PGMLLSALKEYNIDLSRSYVVGDRLTDLQA----AENAGIKGVLVLTGIGVTTDGAG---RAKWVFDSLAEFAN 174 (181)
T ss_pred hHHHHHHHHHhCCCccceEEecCcHHHHHH----HHHCCCCceEEEcCccccccccc---ccccccccHHHHHH
Confidence 999999999999999999999999999999 99999999988887544322211 23467777777663
No 102
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=99.01 E-value=5.2e-09 Score=88.31 Aligned_cols=81 Identities=16% Similarity=0.204 Sum_probs=65.2
Q ss_pred ccCCCCCChHHHH---HcCCCeEEEEcCCCHH---HHHHHHHHhcCCCCC-CCeEEecCC-CChHHHHHHHHhcCCCCCC
Q 024415 136 GANRFYPGIPDAL---KFASSRIYIVTTKQSR---FADALLRELAGVTIP-PDRIYGLGT-GPKVEVLKQLQKKPELQGM 207 (268)
Q Consensus 136 ~~~~~~pg~~e~L---~~~g~~i~ivTn~~~~---~~~~~l~~~~gl~~~-f~~i~~~~~-~pk~~~~~~~~~~~~~~~~ 207 (268)
...+++||+.++| +++|++++++||++.. .+...|+. +|+..+ ++.++..+. .+|+...+.+.+.+++.
T Consensus 115 ~~a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~~Lkk-~Gi~~~~~d~lllr~~~~~K~~rr~~I~~~y~Iv-- 191 (266)
T TIGR01533 115 AQAKPVAGALDFLNYANSKGVKIFYVSNRSEKEKAATLKNLKR-FGFPQADEEHLLLKKDKSSKESRRQKVQKDYEIV-- 191 (266)
T ss_pred CCCCcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHHHHHH-cCcCCCCcceEEeCCCCCCcHHHHHHHHhcCCEE--
Confidence 4557899999999 5999999999998744 45577888 799754 466776654 38888888888888885
Q ss_pred cEEEEecCccchhc
Q 024415 208 TLHFVEDRLATLKN 221 (268)
Q Consensus 208 ~~l~IGDs~~Di~~ 221 (268)
++|||...|+..
T Consensus 192 --l~vGD~~~Df~~ 203 (266)
T TIGR01533 192 --LLFGDNLLDFDD 203 (266)
T ss_pred --EEECCCHHHhhh
Confidence 999999999976
No 103
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=99.00 E-value=4.2e-09 Score=84.22 Aligned_cols=106 Identities=22% Similarity=0.244 Sum_probs=80.4
Q ss_pred hccCCCCCChHHHH---HcCC-CeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecCCC---------------------
Q 024415 135 IGANRFYPGIPDAL---KFAS-SRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGTG--------------------- 189 (268)
Q Consensus 135 ~~~~~~~pg~~e~L---~~~g-~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~~~--------------------- 189 (268)
....|..||+.+++ ++.| +.+.|||.+..-+++..|++ +|+.+.|..|++....
T Consensus 80 ~r~iP~~Pgmv~lik~~ak~g~~eliIVSDaNsfFIe~~Lea-~~~~d~F~~IfTNPa~~da~G~L~v~pyH~~hsC~~C 158 (256)
T KOG3120|consen 80 LRSIPIVPGMVRLIKSAAKLGCFELIIVSDANSFFIEEILEA-AGIHDLFSEIFTNPACVDASGRLLVRPYHTQHSCNLC 158 (256)
T ss_pred HhcCCCCccHHHHHHHHHhCCCceEEEEecCchhHHHHHHHH-ccHHHHHHHHhcCCcccCCCCcEEeecCCCCCccCcC
Confidence 35678999999999 3555 58999999999999999999 8999999988875421
Q ss_pred C----hHHHHHHHH---hcCCCCCCcEEEEecCccchhcccccccccCCeEEEeecCCCCHH
Q 024415 190 P----KVEVLKQLQ---KKPELQGMTLHFVEDRLATLKNVIKEPELDGWNLYLGDWGYNTQK 244 (268)
Q Consensus 190 p----k~~~~~~~~---~~~~~~~~~~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~~~~ 244 (268)
| |...+..+. .+-++..++++||||+.+|+-++ -+-.+.+++....||-.+.
T Consensus 159 PsNmCKg~Vl~~~~~s~~~~gv~yer~iYvGDG~nD~CP~---l~Lr~~D~ampRkgfpl~k 217 (256)
T KOG3120|consen 159 PSNMCKGLVLDELVASQLKDGVRYERLIYVGDGANDFCPV---LRLRACDVAMPRKGFPLWK 217 (256)
T ss_pred chhhhhhHHHHHHHHHHhhcCCceeeEEEEcCCCCCcCcc---hhcccCceecccCCCchHh
Confidence 1 223333332 34577788999999999999996 3346677777788876554
No 104
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=98.99 E-value=9.2e-09 Score=82.86 Aligned_cols=76 Identities=18% Similarity=0.314 Sum_probs=59.3
Q ss_pred CChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecCC-------------CC----hHHHHHHH---
Q 024415 142 PGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGT-------------GP----KVEVLKQL--- 198 (268)
Q Consensus 142 pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~~-------------~p----k~~~~~~~--- 198 (268)
|++.++| +++|++++|+|+++...++.+++. +|+...+ +++.+. ++ |...++.+
T Consensus 92 ~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~-~~i~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~K~~~l~~~~~~ 168 (192)
T PF12710_consen 92 PDAMELIRELKDNGIKVVIVSGSPDEIIEPIAER-LGIDDDN--VIGNELFDNGGGIFTGRITGSNCGGKAEALKELYIR 168 (192)
T ss_dssp TTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHH-TTSSEGG--EEEEEEECTTCCEEEEEEEEEEESHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHH-cCCCceE--EEEEeeeecccceeeeeECCCCCCcHHHHHHHHHHH
Confidence 4444999 689999999999999999999998 7886422 222110 12 89999999
Q ss_pred HhcCCCCCCcEEEEecCccchhc
Q 024415 199 QKKPELQGMTLHFVEDRLATLKN 221 (268)
Q Consensus 199 ~~~~~~~~~~~l~IGDs~~Di~~ 221 (268)
... +.....+++||||.+|+.+
T Consensus 169 ~~~-~~~~~~~~~iGDs~~D~~~ 190 (192)
T PF12710_consen 169 DEE-DIDPDRVIAIGDSINDLPM 190 (192)
T ss_dssp HHH-THTCCEEEEEESSGGGHHH
T ss_pred hhc-CCCCCeEEEEECCHHHHHH
Confidence 555 7788889999999999988
No 105
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=98.97 E-value=2.4e-09 Score=100.31 Aligned_cols=111 Identities=20% Similarity=0.265 Sum_probs=87.0
Q ss_pred CCCCCChHHHH---HcCC-CeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecCCCChHHHHHHHHhcCCCCCCcEEEEe
Q 024415 138 NRFYPGIPDAL---KFAS-SRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGTGPKVEVLKQLQKKPELQGMTLHFVE 213 (268)
Q Consensus 138 ~~~~pg~~e~L---~~~g-~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~~~pk~~~~~~~~~~~~~~~~~~l~IG 213 (268)
.+++||+.++| +++| ++++++||.+...++..+++ +|+..+|..+. ..+|+++++++... +.+++|||
T Consensus 383 d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~~~-lgi~~~f~~~~---p~~K~~~v~~l~~~----~~~v~~vG 454 (556)
T TIGR01525 383 DQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAE-LGIDEVHAELL---PEDKLAIVKELQEE----GGVVAMVG 454 (556)
T ss_pred ccchHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHHHH-hCCCeeeccCC---HHHHHHHHHHHHHc----CCEEEEEE
Confidence 47999999999 6899 99999999999999999999 89977765431 12678888888764 45789999
Q ss_pred cCccchhcccccccccCCeEEEeecCCCCHHHHHhhcCCCCEEEc--CHhHHHhhc
Q 024415 214 DRLATLKNVIKEPELDGWNLYLGDWGYNTQKEREEAASIPRIQLL--QLSDFSRKL 267 (268)
Q Consensus 214 Ds~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~~~~p~~~~~--~~~~l~~~l 267 (268)
|+.+|+.+ ++++| +++.+|.... ... ..+|+++. ++..+.+++
T Consensus 455 Dg~nD~~a----l~~A~---vgia~g~~~~-~~~---~~Ad~vi~~~~~~~l~~~i 499 (556)
T TIGR01525 455 DGINDAPA----LAAAD---VGIAMGAGSD-VAI---EAADIVLLNDDLSSLPTAI 499 (556)
T ss_pred CChhHHHH----HhhCC---EeEEeCCCCH-HHH---HhCCEEEeCCCHHHHHHHH
Confidence 99999999 99999 5667773322 222 24778887 688777664
No 106
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=98.93 E-value=3.1e-09 Score=99.08 Aligned_cols=113 Identities=18% Similarity=0.217 Sum_probs=89.8
Q ss_pred cCCCCCChHHHH---HcCCC-eEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecCCCChHHHHHHHHhcCCCCCCcEEEE
Q 024415 137 ANRFYPGIPDAL---KFASS-RIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGTGPKVEVLKQLQKKPELQGMTLHFV 212 (268)
Q Consensus 137 ~~~~~pg~~e~L---~~~g~-~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~~~pk~~~~~~~~~~~~~~~~~~l~I 212 (268)
..+++||+.++| +++|+ +++++||.+...++..+++ +|+..+|..+. ..+|++.++++..+. ++++||
T Consensus 360 ~d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~-lgi~~~f~~~~---p~~K~~~i~~l~~~~----~~v~~v 431 (536)
T TIGR01512 360 SDEPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVARE-LGIDEVHAELL---PEDKLEIVKELREKY----GPVAMV 431 (536)
T ss_pred eccchHHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHH-cCChhhhhccC---cHHHHHHHHHHHhcC----CEEEEE
Confidence 347899999999 69999 9999999999999999999 89987775332 126788888887665 577999
Q ss_pred ecCccchhcccccccccCCeEEEeecCCCCHHHHHhhcCCCCEEE--cCHhHHHhhc
Q 024415 213 EDRLATLKNVIKEPELDGWNLYLGDWGYNTQKEREEAASIPRIQL--LQLSDFSRKL 267 (268)
Q Consensus 213 GDs~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~~~~p~~~~--~~~~~l~~~l 267 (268)
||+.+|+.+ ++++|+ .+.+|++..+.... .+|+++ +++.++.+++
T Consensus 432 GDg~nD~~a----l~~A~v---gia~g~~~~~~~~~---~ad~vl~~~~l~~l~~~i 478 (536)
T TIGR01512 432 GDGINDAPA----LAAADV---GIAMGASGSDVAIE---TADVVLLNDDLSRLPQAI 478 (536)
T ss_pred eCCHHHHHH----HHhCCE---EEEeCCCccHHHHH---hCCEEEECCCHHHHHHHH
Confidence 999999999 999995 66777533333332 477888 8999988765
No 107
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=98.86 E-value=2.7e-08 Score=77.43 Aligned_cols=114 Identities=12% Similarity=0.196 Sum_probs=75.4
Q ss_pred hccCCCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCe--EEecC----------------C--C-C
Q 024415 135 IGANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDR--IYGLG----------------T--G-P 190 (268)
Q Consensus 135 ~~~~~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~--i~~~~----------------~--~-p 190 (268)
.+...+.||.++++ +.++++++|+|++-...+..+++.+ +-....+. |++.+ + | .
T Consensus 69 lk~i~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~i-vgke~i~~idi~sn~~~ih~dg~h~i~~~~ds~fG~d 147 (220)
T COG4359 69 LKDIKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGI-VGKERIYCIDIVSNNDYIHIDGQHSIKYTDDSQFGHD 147 (220)
T ss_pred HhhcccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhh-ccccceeeeEEeecCceEcCCCceeeecCCccccCCC
Confidence 44567899999999 7999999999999999999999984 42222221 22211 1 1 4
Q ss_pred hHHHHHHHHhcCCCCCCcEEEEecCccchhcccccccccCCeEEEeecCCCCHHHHHh---hcCCCCEEEcCHhHHHh
Q 024415 191 KVEVLKQLQKKPELQGMTLHFVEDRLATLKNVIKEPELDGWNLYLGDWGYNTQKEREE---AASIPRIQLLQLSDFSR 265 (268)
Q Consensus 191 k~~~~~~~~~~~~~~~~~~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~---~~~~p~~~~~~~~~l~~ 265 (268)
|+..+..+.+. ++.++|+|||++|+.+ |+....-+. +..|.. .+-.|...+..+.|+..
T Consensus 148 K~~vI~~l~e~----~e~~fy~GDsvsDlsa----aklsDllFA--------K~~L~nyc~eqn~~f~~fe~F~eIlk 209 (220)
T COG4359 148 KSSVIHELSEP----NESIFYCGDSVSDLSA----AKLSDLLFA--------KDDLLNYCREQNLNFLEFETFYEILK 209 (220)
T ss_pred cchhHHHhhcC----CceEEEecCCcccccH----hhhhhhHhh--------HHHHHHHHHHcCCCCcccccHHHHHH
Confidence 46666655544 5557999999999999 887765111 112221 11356677788777654
No 108
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=98.85 E-value=2.1e-08 Score=94.02 Aligned_cols=109 Identities=18% Similarity=0.221 Sum_probs=84.2
Q ss_pred CCCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecCC-CChHHHHHHHHhcCCCCCCcEEEEe
Q 024415 138 NRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGT-GPKVEVLKQLQKKPELQGMTLHFVE 213 (268)
Q Consensus 138 ~~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~~-~pk~~~~~~~~~~~~~~~~~~l~IG 213 (268)
.+++||+.++| +++|++++++||.+...++..++. +|++ +++... .+|++.++.+..+ +++|+|||
T Consensus 404 d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~-lgi~-----~~~~~~p~~K~~~v~~l~~~----~~~v~~VG 473 (562)
T TIGR01511 404 DQLRPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKE-LGIN-----VRAEVLPDDKAALIKELQEK----GRVVAMVG 473 (562)
T ss_pred ccccHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHH-cCCc-----EEccCChHHHHHHHHHHHHc----CCEEEEEe
Confidence 46899999988 689999999999999999999999 7995 333222 3778888888763 56789999
Q ss_pred cCccchhcccccccccCCeEEEeecCCCCHHHHHhhcCCCCEEE--cCHhHHHhhc
Q 024415 214 DRLATLKNVIKEPELDGWNLYLGDWGYNTQKEREEAASIPRIQL--LQLSDFSRKL 267 (268)
Q Consensus 214 Ds~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~~~~p~~~~--~~~~~l~~~l 267 (268)
|+.+|+.+ ++++|+ .+.+|++.. ... ..+|+++ +++.++.+++
T Consensus 474 Dg~nD~~a----l~~A~v---gia~g~g~~--~a~--~~Advvl~~~~l~~l~~~i 518 (562)
T TIGR01511 474 DGINDAPA----LAQADV---GIAIGAGTD--VAI--EAADVVLMRNDLNDVATAI 518 (562)
T ss_pred CCCccHHH----HhhCCE---EEEeCCcCH--HHH--hhCCEEEeCCCHHHHHHHH
Confidence 99999999 999996 456665432 222 2477888 4888877664
No 109
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=98.84 E-value=5.1e-10 Score=93.99 Aligned_cols=92 Identities=11% Similarity=0.013 Sum_probs=73.7
Q ss_pred CCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeE--EecCC----CChHHHHHHHHhcCCCC-CCcEE
Q 024415 141 YPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRI--YGLGT----GPKVEVLKQLQKKPELQ-GMTLH 210 (268)
Q Consensus 141 ~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i--~~~~~----~pk~~~~~~~~~~~~~~-~~~~l 210 (268)
+|++.+++ +++|+++ |+||.+.......+.. .|...+|..+ .+.+. ||+|++++.+.++++.. +++++
T Consensus 140 ~~~~~~~l~~l~~~g~~~-i~tN~d~~~~~~~~~~-~~~g~~~~~i~~~g~~~~~~gKP~~~~~~~~~~~~~~~~~~~~~ 217 (242)
T TIGR01459 140 LDEFDELFAPIVARKIPN-ICANPDRGINQHGIYR-YGAGYYAELIKQLGGKVIYSGKPYPAIFHKALKECSNIPKNRML 217 (242)
T ss_pred HHHHHHHHHHHHhCCCcE-EEECCCEeccCCCceE-ecccHHHHHHHHhCCcEecCCCCCHHHHHHHHHHcCCCCcccEE
Confidence 67888877 4679997 8899988777666666 6766666654 44432 59999999999999875 57899
Q ss_pred EEecC-ccchhcccccccccCCeEEEeec
Q 024415 211 FVEDR-LATLKNVIKEPELDGWNLYLGDW 238 (268)
Q Consensus 211 ~IGDs-~~Di~~~~~~A~~aG~~~v~v~~ 238 (268)
||||+ .+|+.+ |+++|+.+++|.+
T Consensus 218 ~vGD~~~~Di~~----a~~~G~~~i~v~t 242 (242)
T TIGR01459 218 MVGDSFYTDILG----ANRLGIDTALVLT 242 (242)
T ss_pred EECCCcHHHHHH----HHHCCCeEEEEeC
Confidence 99999 599999 9999999999864
No 110
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=98.82 E-value=5.5e-09 Score=81.85 Aligned_cols=87 Identities=22% Similarity=0.230 Sum_probs=57.8
Q ss_pred CCChHHHH---HcCCCeEEEEcCC---CH-----------HHHHHHHHHhcCCCCCCCeEEecC----CCChHHHHHHHH
Q 024415 141 YPGIPDAL---KFASSRIYIVTTK---QS-----------RFADALLRELAGVTIPPDRIYGLG----TGPKVEVLKQLQ 199 (268)
Q Consensus 141 ~pg~~e~L---~~~g~~i~ivTn~---~~-----------~~~~~~l~~~~gl~~~f~~i~~~~----~~pk~~~~~~~~ 199 (268)
.|++.+.| ++.||.|+|+||. .. ..+..+++. +++. +...++.. +||++-+++.+.
T Consensus 31 ~~~v~~~L~~l~~~Gy~IvIvTNQ~gi~~~~~~~~~~~~~~ki~~il~~-l~ip--~~~~~a~~~d~~RKP~~GM~~~~~ 107 (159)
T PF08645_consen 31 PPGVPEALRELHKKGYKIVIVTNQSGIGRGMGEKDLENFHEKIENILKE-LGIP--IQVYAAPHKDPCRKPNPGMWEFAL 107 (159)
T ss_dssp -TTHHHHHHHHHHTTEEEEEEEE-CCCCCTBTCCHHHHHHHHHHHHHHH-CTS---EEEEECGCSSTTSTTSSHHHHHHC
T ss_pred chhHHHHHHHHHhcCCeEEEEeCccccccccccchHHHHHHHHHHHHHH-cCCc--eEEEecCCCCCCCCCchhHHHHHH
Confidence 35677777 5999999999985 11 234445666 4553 33333322 269999999999
Q ss_pred hcCCC----CCCcEEEEecC-----------ccchhcccccccccCCeEE
Q 024415 200 KKPEL----QGMTLHFVEDR-----------LATLKNVIKEPELDGWNLY 234 (268)
Q Consensus 200 ~~~~~----~~~~~l~IGDs-----------~~Di~~~~~~A~~aG~~~v 234 (268)
.+++. +.++++||||. -+|.+. |.++|+.+.
T Consensus 108 ~~~~~~~~id~~~Sf~VGDaagr~~~~~d~s~~D~~f----A~N~gi~f~ 153 (159)
T PF08645_consen 108 KDYNDGVEIDLANSFYVGDAAGRSKKKKDFSDSDRKF----ALNCGIKFY 153 (159)
T ss_dssp CCTSTT--S-CCC-EEEESSCHCTB-S--S--HHHHH----HHHHT--EE
T ss_pred HhccccccccccceEEEeccCCCCCcccccChhHHHH----HHHcCCccc
Confidence 98875 88899999996 478999 999999654
No 111
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.82 E-value=5.5e-09 Score=89.29 Aligned_cols=83 Identities=13% Similarity=-0.011 Sum_probs=58.6
Q ss_pred HcCCCeEEEE---cCCCHHHHHHHHHHhcCCC----CCCCeEEecCCCChHHHHHHHHhcCCCCC-CcEEEEecCccchh
Q 024415 149 KFASSRIYIV---TTKQSRFADALLRELAGVT----IPPDRIYGLGTGPKVEVLKQLQKKPELQG-MTLHFVEDRLATLK 220 (268)
Q Consensus 149 ~~~g~~i~iv---Tn~~~~~~~~~l~~~~gl~----~~f~~i~~~~~~pk~~~~~~~~~~~~~~~-~~~l~IGDs~~Di~ 220 (268)
+..++...++ |+.....+...++. .++. .++..|+... .|..+++++.+.+++++ +++++|||+.+|+.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~ei~~~~--~Kg~al~~l~~~~~i~~~~~v~~~GDs~NDi~ 221 (273)
T PRK00192 145 KDREFSEPFLWNGSEAAKERFEEALKR-LGLKVTRGGRFLHLLGGG--DKGKAVRWLKELYRRQDGVETIALGDSPNDLP 221 (273)
T ss_pred HhcccCCceeecCchHHHHHHHHHHHH-cCCEEEECCeEEEEeCCC--CHHHHHHHHHHHHhccCCceEEEEcCChhhHH
Confidence 3445554444 44444555566666 5664 3333444443 78999999999999999 99999999999999
Q ss_pred cccccccccCCeEEEeecC
Q 024415 221 NVIKEPELDGWNLYLGDWG 239 (268)
Q Consensus 221 ~~~~~A~~aG~~~v~v~~g 239 (268)
+ ++.+|..++ +.++
T Consensus 222 m----~~~ag~~va-m~NA 235 (273)
T PRK00192 222 M----LEAADIAVV-VPGP 235 (273)
T ss_pred H----HHhCCeeEE-eCCC
Confidence 9 999997554 4444
No 112
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=98.76 E-value=6.3e-08 Score=80.45 Aligned_cols=92 Identities=20% Similarity=0.166 Sum_probs=62.5
Q ss_pred eEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEec---C---CC-ChHHHHHHHHhcCCCCCCcEEEEecCccchhcccccc
Q 024415 154 RIYIVTTKQSRFADALLRELAGVTIPPDRIYGL---G---TG-PKVEVLKQLQKKPELQGMTLHFVEDRLATLKNVIKEP 226 (268)
Q Consensus 154 ~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~---~---~~-pk~~~~~~~~~~~~~~~~~~l~IGDs~~Di~~~~~~A 226 (268)
.+.+.++.........++. ++.. +..+.+. + .+ +|+.+++.+++.++++++++++|||+.+|+.+ +
T Consensus 117 ~~~~~~~~~~~~~~~~l~~-~~~~--~~~~~~~~~~ei~~~~~~Kg~al~~l~~~~~i~~~~~i~~GD~~NDi~m----~ 189 (230)
T PRK01158 117 EVALRRTVPVEEVRELLEE-LGLD--LEIVDSGFAIHIKSPGVNKGTGLKKLAELMGIDPEEVAAIGDSENDLEM----F 189 (230)
T ss_pred eeeecccccHHHHHHHHHH-cCCc--EEEEecceEEEEeeCCCChHHHHHHHHHHhCCCHHHEEEECCchhhHHH----H
Confidence 3455566666667777777 5531 2222111 1 12 78999999999999999999999999999999 9
Q ss_pred cccCCeEEEeecCCCCHHHHHhhcCCCCEEEcC
Q 024415 227 ELDGWNLYLGDWGYNTQKEREEAASIPRIQLLQ 259 (268)
Q Consensus 227 ~~aG~~~v~v~~g~~~~~~~~~~~~~p~~~~~~ 259 (268)
+.+|+.+ ++. |..++.++. .+++..+
T Consensus 190 ~~ag~~v-am~---Na~~~vk~~---a~~v~~~ 215 (230)
T PRK01158 190 EVAGFGV-AVA---NADEELKEA---ADYVTEK 215 (230)
T ss_pred HhcCceE-Eec---CccHHHHHh---cceEecC
Confidence 9999854 444 334455552 3455544
No 113
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=98.70 E-value=6.3e-08 Score=75.87 Aligned_cols=78 Identities=22% Similarity=0.212 Sum_probs=56.5
Q ss_pred eEEEEcCCC-------HHHHHHHHHHhcCCCCCCCeEEecCCCC--hHHHHHHHHhc-CCCCCCcEEEEecCc-cchhcc
Q 024415 154 RIYIVTTKQ-------SRFADALLRELAGVTIPPDRIYGLGTGP--KVEVLKQLQKK-PELQGMTLHFVEDRL-ATLKNV 222 (268)
Q Consensus 154 ~i~ivTn~~-------~~~~~~~l~~~~gl~~~f~~i~~~~~~p--k~~~~~~~~~~-~~~~~~~~l~IGDs~-~Di~~~ 222 (268)
++.|+||+. ...++.+-+. +|+. .+.....|| ..++++++... ....|+++++|||.. .|+.+
T Consensus 79 ~v~IvSNsaGs~~d~~~~~a~~~~~~-lgIp----vl~h~~kKP~~~~~i~~~~~~~~~~~~p~eiavIGDrl~TDVl~- 152 (168)
T PF09419_consen 79 RVLIVSNSAGSSDDPDGERAEALEKA-LGIP----VLRHRAKKPGCFREILKYFKCQKVVTSPSEIAVIGDRLFTDVLM- 152 (168)
T ss_pred eEEEEECCCCcccCccHHHHHHHHHh-hCCc----EEEeCCCCCccHHHHHHHHhhccCCCCchhEEEEcchHHHHHHH-
Confidence 699999983 5666677777 6753 222333344 34566666554 234699999999996 89999
Q ss_pred cccccccCCeEEEeecCC
Q 024415 223 IKEPELDGWNLYLGDWGY 240 (268)
Q Consensus 223 ~~~A~~aG~~~v~v~~g~ 240 (268)
|...|+-+||+..|.
T Consensus 153 ---gN~~G~~tilv~~gv 167 (168)
T PF09419_consen 153 ---GNRMGSYTILVTDGV 167 (168)
T ss_pred ---hhccCceEEEEecCc
Confidence 999999999998773
No 114
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=98.68 E-value=6e-08 Score=81.96 Aligned_cols=39 Identities=13% Similarity=0.014 Sum_probs=36.6
Q ss_pred HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecCC
Q 024415 149 KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGT 188 (268)
Q Consensus 149 ~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~~ 188 (268)
+++|++++|+||+.+..+...++. +|+..+|+.|++++.
T Consensus 159 kekGikLaIaTS~~Re~v~~~L~~-lGLd~YFdvIIs~Gd 197 (301)
T TIGR01684 159 KKRGCILVLWSYGDRDHVVESMRK-VKLDRYFDIIISGGH 197 (301)
T ss_pred HHCCCEEEEEECCCHHHHHHHHHH-cCCCcccCEEEECCc
Confidence 799999999999999999999999 899999999998875
No 115
>PRK10671 copA copper exporting ATPase; Provisional
Probab=98.61 E-value=7.8e-08 Score=94.31 Aligned_cols=113 Identities=19% Similarity=0.171 Sum_probs=86.8
Q ss_pred CCCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecCCCChHHHHHHHHhcCCCCCCcEEEEec
Q 024415 138 NRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGTGPKVEVLKQLQKKPELQGMTLHFVED 214 (268)
Q Consensus 138 ~~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~~~pk~~~~~~~~~~~~~~~~~~l~IGD 214 (268)
.+++||+.+.| ++.|++++++|+.....++..++. +|+..+|..+ ...+|.++++.+..+ +++++||||
T Consensus 649 d~~r~~a~~~i~~L~~~gi~v~~~Tgd~~~~a~~ia~~-lgi~~~~~~~---~p~~K~~~i~~l~~~----~~~v~~vGD 720 (834)
T PRK10671 649 DPLRSDSVAALQRLHKAGYRLVMLTGDNPTTANAIAKE-AGIDEVIAGV---LPDGKAEAIKRLQSQ----GRQVAMVGD 720 (834)
T ss_pred CcchhhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHH-cCCCEEEeCC---CHHHHHHHHHHHhhc----CCEEEEEeC
Confidence 37899999998 689999999999999999999999 7996543321 112577788877654 567899999
Q ss_pred CccchhcccccccccCCeEEEeecCCCCHHHHHhhcCCCCEEEcCHhHHHhhc
Q 024415 215 RLATLKNVIKEPELDGWNLYLGDWGYNTQKEREEAASIPRIQLLQLSDFSRKL 267 (268)
Q Consensus 215 s~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~~~~p~~~~~~~~~l~~~l 267 (268)
+.+|+.+ ++.+|+ ++.+|.++....+. +.+.+..+++.++.+++
T Consensus 721 g~nD~~a----l~~Agv---gia~g~g~~~a~~~--ad~vl~~~~~~~i~~~i 764 (834)
T PRK10671 721 GINDAPA----LAQADV---GIAMGGGSDVAIET--AAITLMRHSLMGVADAL 764 (834)
T ss_pred CHHHHHH----HHhCCe---eEEecCCCHHHHHh--CCEEEecCCHHHHHHHH
Confidence 9999999 999999 55566555544443 45556778888887765
No 116
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=98.58 E-value=4.1e-07 Score=73.54 Aligned_cols=105 Identities=17% Similarity=0.142 Sum_probs=64.1
Q ss_pred ccCCCCCChHHHH---HcCCCeEEEEcCCCH-------HHHHHHHHHhcCCCCCCCeEEecCCCChHHHHHHHHhcCCCC
Q 024415 136 GANRFYPGIPDAL---KFASSRIYIVTTKQS-------RFADALLRELAGVTIPPDRIYGLGTGPKVEVLKQLQKKPELQ 205 (268)
Q Consensus 136 ~~~~~~pg~~e~L---~~~g~~i~ivTn~~~-------~~~~~~l~~~~gl~~~f~~i~~~~~~pk~~~~~~~~~~~~~~ 205 (268)
...++.||+.++| .+.|+.+.+||+.+. ......+++.+|...+-+.+++ ..|. ..+..
T Consensus 70 ~~l~p~~gA~e~l~~L~~~g~~~~~Itar~~~~~~~~~~~k~~Wl~~hf~~i~~~~~~~~-~~K~----------~v~~D 138 (191)
T PF06941_consen 70 SNLPPIPGAVEALKKLRDKGHEIVIITARPPEFPDHSAEEKREWLERHFPFIPYDNLIFT-GDKT----------LVGGD 138 (191)
T ss_dssp TT--B-TTHHHHHHHHHTSTTEEEEEEE-SSSSGCCCHHHHHHHHHHHHTHHHHCCEEEE-SSGG----------GC--S
T ss_pred cCCCccHHHHHHHHHHHHcCCcEEEEEecCccccchHHHHHHHHHHHHcCCCchheEEEe-cCCC----------eEecc
Confidence 4568999999999 478877777776543 2444556653453222234444 3321 12334
Q ss_pred CCcEEEEecCccchhcccccccccCCeEEEeecCCCCHHHHHhhcCCCCEEEcCHhHHHhh
Q 024415 206 GMTLHFVEDRLATLKNVIKEPELDGWNLYLGDWGYNTQKEREEAASIPRIQLLQLSDFSRK 266 (268)
Q Consensus 206 ~~~~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~~~~p~~~~~~~~~l~~~ 266 (268)
++|+|++..+.. +.+.|+.++++.++||.... .-..+.+.+|+.++
T Consensus 139 ----vlIDD~~~n~~~----~~~~g~~~iLfd~p~Nr~~~-------~~~Rv~~W~ei~~~ 184 (191)
T PF06941_consen 139 ----VLIDDRPHNLEQ----FANAGIPVILFDQPYNRDES-------NFPRVNNWEEIEDL 184 (191)
T ss_dssp ----EEEESSSHHHSS-----SSESSEEEEE--GGGTT---------TSEEE-STTSHHHH
T ss_pred ----EEecCChHHHHh----ccCCCceEEEEcCCCCCCCC-------CCccCCCHHHHHHH
Confidence 999999999999 99999999999998875422 33788999987664
No 117
>PTZ00445 p36-lilke protein; Provisional
Probab=98.55 E-value=1.3e-07 Score=75.95 Aligned_cols=94 Identities=18% Similarity=0.210 Sum_probs=74.3
Q ss_pred CCCChHHHH---HcCCCeEEEEcCCCH---------------HHHHHHHHHhcCCCCCCCeEEecC--------------
Q 024415 140 FYPGIPDAL---KFASSRIYIVTTKQS---------------RFADALLRELAGVTIPPDRIYGLG-------------- 187 (268)
Q Consensus 140 ~~pg~~e~L---~~~g~~i~ivTn~~~---------------~~~~~~l~~~~gl~~~f~~i~~~~-------------- 187 (268)
+.|.+..++ ++.|++++|||-++. ++++..|+. .+.+...+.+++.-
T Consensus 76 ~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~~li~~~lk~-s~~~~~i~~~~~yyp~~w~~p~~y~~~g 154 (219)
T PTZ00445 76 VTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISGDRMVEAALKK-SKCDFKIKKVYAYYPKFWQEPSDYRPLG 154 (219)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceechHHHHHHHHHh-cCccceeeeeeeeCCcccCChhhhhhhc
Confidence 445566655 589999999996655 368888887 55554445555421
Q ss_pred -CCChHHH--H--HHHHhcCCCCCCcEEEEecCccchhcccccccccCCeEEEeec
Q 024415 188 -TGPKVEV--L--KQLQKKPELQGMTLHFVEDRLATLKNVIKEPELDGWNLYLGDW 238 (268)
Q Consensus 188 -~~pk~~~--~--~~~~~~~~~~~~~~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~ 238 (268)
.+|+|++ + ++++++.++.|++++||+|+..++++ |++.|+.++.+..
T Consensus 155 l~KPdp~iK~yHle~ll~~~gl~peE~LFIDD~~~NVea----A~~lGi~ai~f~~ 206 (219)
T PTZ00445 155 LDAPMPLDKSYHLKQVCSDFNVNPDEILFIDDDMNNCKN----ALKEGYIALHVTG 206 (219)
T ss_pred ccCCCccchHHHHHHHHHHcCCCHHHeEeecCCHHHHHH----HHHCCCEEEEcCC
Confidence 1488888 8 99999999999999999999999999 9999999999863
No 118
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=98.54 E-value=1.8e-07 Score=78.50 Aligned_cols=83 Identities=18% Similarity=0.318 Sum_probs=67.7
Q ss_pred cCCCCCChHHHH---HcCCCeEEEEcCCCHHHHH--HHHHHhcCCCC-CCCeEEecCCCChHHHHHHHHhcCCCCCCcEE
Q 024415 137 ANRFYPGIPDAL---KFASSRIYIVTTKQSRFAD--ALLRELAGVTI-PPDRIYGLGTGPKVEVLKQLQKKPELQGMTLH 210 (268)
Q Consensus 137 ~~~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~--~~l~~~~gl~~-~f~~i~~~~~~pk~~~~~~~~~~~~~~~~~~l 210 (268)
...++||+.++| +++|++++++||+++.... ..+++ +|+.. +|+.|++++... .+.+.....+.+..+.+++
T Consensus 22 ~~~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~-~gl~~~~~~~Ii~s~~~~-~~~l~~~~~~~~~~~~~~~ 99 (242)
T TIGR01459 22 GNHTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKS-LGINADLPEMIISSGEIA-VQMILESKKRFDIRNGIIY 99 (242)
T ss_pred CCccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHH-CCCCccccceEEccHHHH-HHHHHhhhhhccCCCceEE
Confidence 346899999999 6899999999999887665 77899 79987 899999987532 2456666667778889999
Q ss_pred EEecCccchhc
Q 024415 211 FVEDRLATLKN 221 (268)
Q Consensus 211 ~IGDs~~Di~~ 221 (268)
+|||+..|+..
T Consensus 100 ~vGd~~~d~~~ 110 (242)
T TIGR01459 100 LLGHLENDIIN 110 (242)
T ss_pred EeCCcccchhh
Confidence 99999888876
No 119
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=98.52 E-value=2.9e-07 Score=77.95 Aligned_cols=39 Identities=15% Similarity=-0.011 Sum_probs=36.3
Q ss_pred HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecCC
Q 024415 149 KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGT 188 (268)
Q Consensus 149 ~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~~ 188 (268)
+++|++++|+||+++..+...++. +|+..+|+.|++++.
T Consensus 161 kekGikLaIvTNg~Re~v~~~Le~-lgL~~yFDvII~~g~ 199 (303)
T PHA03398 161 KERGCVLVLWSYGNREHVVHSLKE-TKLEGYFDIIICGGR 199 (303)
T ss_pred HHCCCEEEEEcCCChHHHHHHHHH-cCCCccccEEEECCC
Confidence 799999999999999999999999 899999999988764
No 120
>PLN02645 phosphoglycolate phosphatase
Probab=98.52 E-value=5e-07 Score=78.68 Aligned_cols=86 Identities=15% Similarity=0.252 Sum_probs=59.9
Q ss_pred CCCChHHHH---HcCCCeEEEEcCCC---HHHHHHHHHHhcCCCCCCCeEEecCCCChHHHHHHHHhcCCCCCCcEEEEe
Q 024415 140 FYPGIPDAL---KFASSRIYIVTTKQ---SRFADALLRELAGVTIPPDRIYGLGTGPKVEVLKQLQKKPELQGMTLHFVE 213 (268)
Q Consensus 140 ~~pg~~e~L---~~~g~~i~ivTn~~---~~~~~~~l~~~~gl~~~f~~i~~~~~~pk~~~~~~~~~~~~~~~~~~l~IG 213 (268)
++||+.++| +++|++++++||++ .......++. +|+...++.|+++.. ....+.+..+....+.+||+
T Consensus 45 ~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~-lGi~~~~~~I~ts~~-----~~~~~l~~~~~~~~~~V~vi 118 (311)
T PLN02645 45 LIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFES-LGLNVTEEEIFSSSF-----AAAAYLKSINFPKDKKVYVI 118 (311)
T ss_pred cCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHH-CCCCCChhhEeehHH-----HHHHHHHhhccCCCCEEEEE
Confidence 456666666 68999999999987 4444455677 799877888877653 33333333333333448898
Q ss_pred cCccchhcccccccccCCeEEE
Q 024415 214 DRLATLKNVIKEPELDGWNLYL 235 (268)
Q Consensus 214 Ds~~Di~~~~~~A~~aG~~~v~ 235 (268)
++..+... ++.+|+.++.
T Consensus 119 G~~~~~~~----l~~~Gi~~~~ 136 (311)
T PLN02645 119 GEEGILEE----LELAGFQYLG 136 (311)
T ss_pred cCHHHHHH----HHHCCCEEec
Confidence 88888888 8999987654
No 121
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=98.51 E-value=1.2e-07 Score=74.59 Aligned_cols=95 Identities=8% Similarity=-0.108 Sum_probs=75.0
Q ss_pred cCCCCCChHHHHH--cCCCeEEEEcCCCHHHHHHHHHHhcCCCC-CCCeEEecCCC--ChHHHHHHHHhcCCCCCCcEEE
Q 024415 137 ANRFYPGIPDALK--FASSRIYIVTTKQSRFADALLRELAGVTI-PPDRIYGLGTG--PKVEVLKQLQKKPELQGMTLHF 211 (268)
Q Consensus 137 ~~~~~pg~~e~L~--~~g~~i~ivTn~~~~~~~~~l~~~~gl~~-~f~~i~~~~~~--pk~~~~~~~~~~~~~~~~~~l~ 211 (268)
.+..+||+.++|+ ++.+.++|.|++.+.+++.+++. ++... +|+.+++.+.. .++. +.+-+...+.+++++|+
T Consensus 40 ~v~~RPgl~eFL~~l~~~yei~I~Ts~~~~yA~~il~~-ldp~~~~f~~~l~r~~~~~~~~~-~~K~L~~l~~~~~~vIi 117 (162)
T TIGR02251 40 YVFKRPHVDEFLERVSKWYELVIFTASLEEYADPVLDI-LDRGGKVISRRLYRESCVFTNGK-YVKDLSLVGKDLSKVII 117 (162)
T ss_pred EEEECCCHHHHHHHHHhcCEEEEEcCCcHHHHHHHHHH-HCcCCCEEeEEEEccccEEeCCC-EEeEchhcCCChhhEEE
Confidence 3468899999992 44499999999999999999999 68765 88888887763 2222 33333446778899999
Q ss_pred EecCccchhcccccccccCCeEEEee
Q 024415 212 VEDRLATLKNVIKEPELDGWNLYLGD 237 (268)
Q Consensus 212 IGDs~~Di~~~~~~A~~aG~~~v~v~ 237 (268)
|||++.++.+ +..+|+.+....
T Consensus 118 VDD~~~~~~~----~~~NgI~i~~f~ 139 (162)
T TIGR02251 118 IDNSPYSYSL----QPDNAIPIKSWF 139 (162)
T ss_pred EeCChhhhcc----CccCEeecCCCC
Confidence 9999999999 999998777655
No 122
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=98.45 E-value=1.1e-06 Score=86.81 Aligned_cols=114 Identities=17% Similarity=0.203 Sum_probs=85.6
Q ss_pred CCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEec-----------------------CCC-Ch
Q 024415 139 RFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGL-----------------------GTG-PK 191 (268)
Q Consensus 139 ~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~-----------------------~~~-pk 191 (268)
+++||+.+++ ++.|+++.++|+.....+....+. .|+...++.++++ ... .|
T Consensus 528 p~r~~~~~~i~~l~~~Gi~v~miTGD~~~tA~~ia~~-~Gi~~~~~~~v~g~~l~~~~~~~l~~~~~~~~Vfar~~P~~K 606 (884)
T TIGR01522 528 PPRPGVKEAVTTLITGGVRIIMITGDSQETAVSIARR-LGMPSKTSQSVSGEKLDAMDDQQLSQIVPKVAVFARASPEHK 606 (884)
T ss_pred cchhHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHH-cCCCCCCCceeEhHHhHhCCHHHHHHHhhcCeEEEECCHHHH
Confidence 7899999999 799999999999999999999999 8997666544332 221 35
Q ss_pred HHHHHHHHhcCCCCCCcEEEEecCccchhcccccccccCCeEEEeecCCCCHHHHHhhcCCCCEEE--cCHhHHHhhc
Q 024415 192 VEVLKQLQKKPELQGMTLHFVEDRLATLKNVIKEPELDGWNLYLGDWGYNTQKEREEAASIPRIQL--LQLSDFSRKL 267 (268)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~~~~p~~~~--~~~~~l~~~l 267 (268)
..+++.+... .+.+.||||+.+|..+ .+.|++ ++.+|.+..+.-+ ..+|+++ +++..+.+.+
T Consensus 607 ~~iv~~lq~~----g~~v~mvGDGvND~pA----l~~AdV---Gia~g~~g~~va~---~aaDivl~dd~~~~i~~~i 670 (884)
T TIGR01522 607 MKIVKALQKR----GDVVAMTGDGVNDAPA----LKLADI---GVAMGQTGTDVAK---EAADMILTDDDFATILSAI 670 (884)
T ss_pred HHHHHHHHHC----CCEEEEECCCcccHHH----HHhCCe---eEecCCCcCHHHH---HhcCEEEcCCCHHHHHHHH
Confidence 5566666654 3667999999999999 999995 6666643332322 2478999 5588887654
No 123
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=98.43 E-value=3.4e-07 Score=76.95 Aligned_cols=75 Identities=23% Similarity=0.192 Sum_probs=65.5
Q ss_pred CChHHHHHHHHhcCCCCCCcEEEEecCc-cchhcccccccccCCeEEEeecCCCCHHHHHhh----cCCCCEEEcCHhHH
Q 024415 189 GPKVEVLKQLQKKPELQGMTLHFVEDRL-ATLKNVIKEPELDGWNLYLGDWGYNTQKEREEA----ASIPRIQLLQLSDF 263 (268)
Q Consensus 189 ~pk~~~~~~~~~~~~~~~~~~l~IGDs~-~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~----~~~p~~~~~~~~~l 263 (268)
||.+.+++.+.++.++.|++++||||+. +||.. ++++|+.++++.+|-++.++.+.. ...|||.+.++.++
T Consensus 224 KP~~~m~~~l~~~~~i~psRt~mvGDRL~TDIlF----G~~~G~~TLLvltGv~~led~~~~~~~~~~~PDyy~~~l~d~ 299 (306)
T KOG2882|consen 224 KPSTFMFEYLLEKFNIDPSRTCMVGDRLDTDILF----GKNCGFKTLLVLSGVTTLEDILEAQGDNKMVPDYYADSLGDL 299 (306)
T ss_pred CCCHHHHHHHHHHcCCCcceEEEEcccchhhhhH----hhccCcceEEEecCcCcHHHHHhcccccCCCCchHHhhHHHH
Confidence 4889999999999999999999999995 79999 999999999999998777766553 23599999999988
Q ss_pred Hhhc
Q 024415 264 SRKL 267 (268)
Q Consensus 264 ~~~l 267 (268)
..++
T Consensus 300 ~~~~ 303 (306)
T KOG2882|consen 300 LPLL 303 (306)
T ss_pred hhhc
Confidence 7664
No 124
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=98.38 E-value=4.1e-07 Score=79.54 Aligned_cols=74 Identities=15% Similarity=0.100 Sum_probs=56.5
Q ss_pred CChHHHHHHHHhcC--------C-----CCCCcEEEEecCc-cchhcccccccccCCeEEEeecCCCCHHHHHhhcCCCC
Q 024415 189 GPKVEVLKQLQKKP--------E-----LQGMTLHFVEDRL-ATLKNVIKEPELDGWNLYLGDWGYNTQKEREEAASIPR 254 (268)
Q Consensus 189 ~pk~~~~~~~~~~~--------~-----~~~~~~l~IGDs~-~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~~~~p~ 254 (268)
||++.+++.+...+ + ..+++++||||+. +||.+ |+++||.+++|.+|-...++. .....|+
T Consensus 233 KP~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~mIGD~~~tDI~g----a~~~G~~silV~tG~~~~~~~-~~~~~p~ 307 (321)
T TIGR01456 233 KPTKLTYDFAEDVLIDWEKRLSGTKPSTSPFHALYMVGDNPASDIIG----AQNYGWFSCLVKTGVYNGGDD-LKECKPT 307 (321)
T ss_pred CCChHHHHHHHHHHHHHHhhhccccccCCChheEEEEcCChhhhhhh----HHhCCceEEEecccccCCCCC-CCCCCCC
Confidence 48888887755544 2 2457999999996 89999 999999999999984333231 1224699
Q ss_pred EEEcCHhHHHhhc
Q 024415 255 IQLLQLSDFSRKL 267 (268)
Q Consensus 255 ~~~~~~~~l~~~l 267 (268)
+++.++.|+...|
T Consensus 308 ~vv~~l~e~~~~i 320 (321)
T TIGR01456 308 LIVNDVFDAVTKI 320 (321)
T ss_pred EEECCHHHHHHHh
Confidence 9999999988764
No 125
>COG4996 Predicted phosphatase [General function prediction only]
Probab=98.35 E-value=1.4e-06 Score=64.22 Aligned_cols=85 Identities=13% Similarity=0.141 Sum_probs=65.1
Q ss_pred ccCCCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecCCCChHHHH----HHHHh--cCCCCC
Q 024415 136 GANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGTGPKVEVL----KQLQK--KPELQG 206 (268)
Q Consensus 136 ~~~~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~~~pk~~~~----~~~~~--~~~~~~ 206 (268)
....++|.+.+++ +..|+-++.+|=+....+-+.|.. +++..+|+.++.....-|-.++ +.+.. ...++|
T Consensus 38 ~ev~L~~~v~~~l~warnsG~i~~~~sWN~~~kA~~aLra-l~~~~yFhy~ViePhP~K~~ML~~llr~i~~er~~~ikP 116 (164)
T COG4996 38 REVHLFPDVKETLKWARNSGYILGLASWNFEDKAIKALRA-LDLLQYFHYIVIEPHPYKFLMLSQLLREINTERNQKIKP 116 (164)
T ss_pred eEEEEcHHHHHHHHHHHhCCcEEEEeecCchHHHHHHHHH-hchhhhEEEEEecCCChhHHHHHHHHHHHHHhhccccCc
Confidence 3457999999999 799999999998888888899999 8999999988766543333333 33332 355799
Q ss_pred CcEEEEecCccchhc
Q 024415 207 MTLHFVEDRLATLKN 221 (268)
Q Consensus 207 ~~~l~IGDs~~Di~~ 221 (268)
.+++|++|..--+..
T Consensus 117 ~~Ivy~DDR~iH~~~ 131 (164)
T COG4996 117 SEIVYLDDRRIHFGN 131 (164)
T ss_pred ceEEEEecccccHHH
Confidence 999999999754444
No 126
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=98.27 E-value=4.7e-06 Score=80.68 Aligned_cols=109 Identities=17% Similarity=0.157 Sum_probs=81.1
Q ss_pred CCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecCC-CChHHHHHHHHhcCCCCCCcEEEEec
Q 024415 139 RFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGT-GPKVEVLKQLQKKPELQGMTLHFVED 214 (268)
Q Consensus 139 ~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~~-~pk~~~~~~~~~~~~~~~~~~l~IGD 214 (268)
+++||+.+.| +++|++++++|+.....+..+.+. +|+..++. .. .-|+.+++.+.+. ..++||||
T Consensus 568 ~~r~~a~~~i~~L~~~gi~~~llTGd~~~~a~~ia~~-lgi~~~~~-----~~p~~K~~~v~~l~~~-----~~v~mvGD 636 (741)
T PRK11033 568 TLRADARQAISELKALGIKGVMLTGDNPRAAAAIAGE-LGIDFRAG-----LLPEDKVKAVTELNQH-----APLAMVGD 636 (741)
T ss_pred CCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHH-cCCCeecC-----CCHHHHHHHHHHHhcC-----CCEEEEEC
Confidence 7999999999 689999999999999999999999 89963222 11 1478888888742 46899999
Q ss_pred CccchhcccccccccCCeEEEeecCCCCHHHHHhhcCCCCEEEcCHhHHHhhc
Q 024415 215 RLATLKNVIKEPELDGWNLYLGDWGYNTQKEREEAASIPRIQLLQLSDFSRKL 267 (268)
Q Consensus 215 s~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~~~~p~~~~~~~~~l~~~l 267 (268)
+.+|..+ .+.++ |++..|.++....+. +...+..+++..|..++
T Consensus 637 giNDapA----l~~A~---vgia~g~~~~~a~~~--adivl~~~~l~~l~~~i 680 (741)
T PRK11033 637 GINDAPA----MKAAS---IGIAMGSGTDVALET--ADAALTHNRLRGLAQMI 680 (741)
T ss_pred CHHhHHH----HHhCC---eeEEecCCCHHHHHh--CCEEEecCCHHHHHHHH
Confidence 9999999 99998 455556554434333 33334446788777654
No 127
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=98.23 E-value=8.8e-07 Score=70.48 Aligned_cols=75 Identities=12% Similarity=0.096 Sum_probs=63.4
Q ss_pred CChHHHHHHHHhcCCCCCCcEEEEecCc-cchhcccccccccCCeEEEeecCCCCHHHHHhhcCCCCEEEcCHhHHHhhc
Q 024415 189 GPKVEVLKQLQKKPELQGMTLHFVEDRL-ATLKNVIKEPELDGWNLYLGDWGYNTQKEREEAASIPRIQLLQLSDFSRKL 267 (268)
Q Consensus 189 ~pk~~~~~~~~~~~~~~~~~~l~IGDs~-~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~~~~p~~~~~~~~~l~~~l 267 (268)
||.|..|+..+...+..|++++||||.. .|+.+ |.++||..|.|.+|...+.+.......||..++++.|-.+++
T Consensus 181 KP~~~fFe~al~~~gv~p~~aVMIGDD~~dDvgG----Aq~~GMrgilVkTGK~rpsDe~k~~~~p~~~~d~f~~AVd~I 256 (262)
T KOG3040|consen 181 KPSPFFFESALQALGVDPEEAVMIGDDLNDDVGG----AQACGMRGILVKTGKFRPSDEEKPPVPPDLTADNFADAVDLI 256 (262)
T ss_pred CCCHHHHHHHHHhcCCChHHheEEccccccchhh----HhhhcceeEEeeccccCCcccccCCCCcchhhhhHHHHHHHH
Confidence 4899999999999999999999999996 59999 999999999999996555455555567899999998866553
No 128
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=98.18 E-value=1.5e-05 Score=65.77 Aligned_cols=81 Identities=20% Similarity=0.134 Sum_probs=59.4
Q ss_pred hccCCCCCChHHHH---HcCCCeEEEEcCCCHHH---HHHHHHHhcCCCCCCCeEEecC--CC-C-----hHHHHHHHHh
Q 024415 135 IGANRFYPGIPDAL---KFASSRIYIVTTKQSRF---ADALLRELAGVTIPPDRIYGLG--TG-P-----KVEVLKQLQK 200 (268)
Q Consensus 135 ~~~~~~~pg~~e~L---~~~g~~i~ivTn~~~~~---~~~~l~~~~gl~~~f~~i~~~~--~~-p-----k~~~~~~~~~ 200 (268)
....+..|++.+++ +++|++++++||.+... +..-|.. .|+..+ +.++-.. .. + |.+..+++..
T Consensus 116 ~~~apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~-~G~~~~-~~LiLR~~~d~~~~~~~yKs~~R~~l~~ 193 (229)
T TIGR01675 116 KGAAPALPEGLKLYQKIIELGIKIFLLSGRWEELRNATLDNLIN-AGFTGW-KHLILRGLEDSNKTVVTYKSEVRKSLME 193 (229)
T ss_pred cCCCCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHH-cCCCCc-CeeeecCCCCCCchHhHHHHHHHHHHHh
Confidence 34568899999999 59999999999998766 6667777 688765 5544432 22 2 5566656654
Q ss_pred -cCCCCCCcEEEEecCccchhc
Q 024415 201 -KPELQGMTLHFVEDRLATLKN 221 (268)
Q Consensus 201 -~~~~~~~~~l~IGDs~~Di~~ 221 (268)
.+.+- ..|||..+|+.+
T Consensus 194 ~GYrIv----~~iGDq~sDl~G 211 (229)
T TIGR01675 194 EGYRIW----GNIGDQWSDLLG 211 (229)
T ss_pred CCceEE----EEECCChHHhcC
Confidence 36666 899999999977
No 129
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=98.17 E-value=6.3e-06 Score=70.00 Aligned_cols=51 Identities=18% Similarity=0.096 Sum_probs=41.3
Q ss_pred ChHHHHHHHHhcCCCCCCcEEEEecCccchhcccccccccCCeEEEeecCCCCHHHHHh
Q 024415 190 PKVEVLKQLQKKPELQGMTLHFVEDRLATLKNVIKEPELDGWNLYLGDWGYNTQKEREE 248 (268)
Q Consensus 190 pk~~~~~~~~~~~~~~~~~~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~ 248 (268)
.|..+++.+.+.+++.+++++.|||+.+|+.+ -+.+|.. |++.+ ..++.+.
T Consensus 189 ~K~~al~~l~~~lgi~~~~v~afGD~~ND~~M----l~~ag~g-vam~N---a~~~~k~ 239 (264)
T COG0561 189 SKGYALQRLAKLLGIKLEEVIAFGDSTNDIEM----LEVAGLG-VAMGN---ADEELKE 239 (264)
T ss_pred chHHHHHHHHHHhCCCHHHeEEeCCccccHHH----HHhcCee-eeccC---CCHHHHh
Confidence 78999999999999999999999999999999 8888864 33433 3345554
No 130
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=98.17 E-value=1.5e-05 Score=68.06 Aligned_cols=52 Identities=13% Similarity=0.008 Sum_probs=43.8
Q ss_pred ChHHHHHHHHhcCCCCCCcEEEEecCccchhcccccccccCCeEEEeecCCCCHHHHHhh
Q 024415 190 PKVEVLKQLQKKPELQGMTLHFVEDRLATLKNVIKEPELDGWNLYLGDWGYNTQKEREEA 249 (268)
Q Consensus 190 pk~~~~~~~~~~~~~~~~~~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~ 249 (268)
.|..+++.+++.+++++++++.|||+.+|+.+ -+.+|. .|++. |..++.++.
T Consensus 188 sKg~al~~l~~~~gi~~~~v~afGD~~NDi~M----l~~ag~-~vAm~---Na~~~vK~~ 239 (272)
T PRK15126 188 NKGAALAVLSQHLGLSLADCMAFGDAMNDREM----LGSVGR-GFIMG---NAMPQLRAE 239 (272)
T ss_pred ChHHHHHHHHHHhCCCHHHeEEecCCHHHHHH----HHHcCC-ceecc---CChHHHHHh
Confidence 78999999999999999999999999999999 899997 44444 444566653
No 131
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=98.13 E-value=5.4e-06 Score=64.44 Aligned_cols=84 Identities=15% Similarity=0.094 Sum_probs=59.7
Q ss_pred HcCCCeEEEEcCCCHHHHHHH----HHHhcCCCCCCCeEEecCCCChHHHH--HHHHhcCCCCCCcEEEEecCccchhcc
Q 024415 149 KFASSRIYIVTTKQSRFADAL----LRELAGVTIPPDRIYGLGTGPKVEVL--KQLQKKPELQGMTLHFVEDRLATLKNV 222 (268)
Q Consensus 149 ~~~g~~i~ivTn~~~~~~~~~----l~~~~gl~~~f~~i~~~~~~pk~~~~--~~~~~~~~~~~~~~l~IGDs~~Di~~~ 222 (268)
.++|-.|+.+|+..+..++.+ .+. +.+......++.++. |+|.-. -+...+.+.. |+-|||-+||.+
T Consensus 127 q~RGD~i~FvTGRt~gk~d~vsk~Lak~-F~i~~m~pv~f~Gdk-~k~~qy~Kt~~i~~~~~~----IhYGDSD~Di~A- 199 (237)
T COG3700 127 QRRGDAIYFVTGRTPGKTDTVSKTLAKN-FHITNMNPVIFAGDK-PKPGQYTKTQWIQDKNIR----IHYGDSDNDITA- 199 (237)
T ss_pred HhcCCeEEEEecCCCCcccccchhHHhh-cccCCCcceeeccCC-CCcccccccHHHHhcCce----EEecCCchhhhH-
Confidence 599999999999866544333 334 566655556666554 454443 2344456777 999999999999
Q ss_pred cccccccCCeEEEeecCCCC
Q 024415 223 IKEPELDGWNLYLGDWGYNT 242 (268)
Q Consensus 223 ~~~A~~aG~~~v~v~~g~~~ 242 (268)
|+.+|+..|-+.+..|.
T Consensus 200 ---AkeaG~RgIRilRAaNS 216 (237)
T COG3700 200 ---AKEAGARGIRILRAANS 216 (237)
T ss_pred ---HHhcCccceeEEecCCc
Confidence 99999999988766543
No 132
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=98.13 E-value=1.1e-05 Score=59.50 Aligned_cols=115 Identities=11% Similarity=0.187 Sum_probs=83.9
Q ss_pred CCCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecCC-CChHHHHHHHHhcCCCCCCcEEEEe
Q 024415 138 NRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGT-GPKVEVLKQLQKKPELQGMTLHFVE 213 (268)
Q Consensus 138 ~~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~~-~pk~~~~~~~~~~~~~~~~~~l~IG 213 (268)
-.+|+.+.+.+ +.. ..++|.|+....++...++- .|+. .+.++.... --|..+++.+.+++ +.|+|||
T Consensus 29 Gklf~ev~e~iqeL~d~-V~i~IASgDr~gsl~~lae~-~gi~--~~rv~a~a~~e~K~~ii~eLkk~~----~k~vmVG 100 (152)
T COG4087 29 GKLFSEVSETIQELHDM-VDIYIASGDRKGSLVQLAEF-VGIP--VERVFAGADPEMKAKIIRELKKRY----EKVVMVG 100 (152)
T ss_pred cEEcHhhHHHHHHHHHh-heEEEecCCcchHHHHHHHH-cCCc--eeeeecccCHHHHHHHHHHhcCCC----cEEEEec
Confidence 46888888888 466 99999999888888888888 7863 445544433 25677777776644 4459999
Q ss_pred cCccchhcccccccccCCeEEEeecCCCCHHHHHhhcCCCCEEEcCHhHHHhhcC
Q 024415 214 DRLATLKNVIKEPELDGWNLYLGDWGYNTQKEREEAASIPRIQLLQLSDFSRKLK 268 (268)
Q Consensus 214 Ds~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~~~~p~~~~~~~~~l~~~l~ 268 (268)
|+.+|+.+ -+++.+-.+-+-.+ +-++.+. ..+|+++.++.|+.++++
T Consensus 101 nGaND~la----Lr~ADlGI~tiq~e-~v~~r~l---~~ADvvik~i~e~ldl~~ 147 (152)
T COG4087 101 NGANDILA----LREADLGICTIQQE-GVPERLL---LTADVVLKEIAEILDLLK 147 (152)
T ss_pred CCcchHHH----hhhcccceEEeccC-CcchHHH---hhchhhhhhHHHHHHHhh
Confidence 99999999 88888766665543 3333333 247899999999888763
No 133
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=98.08 E-value=2.8e-06 Score=71.01 Aligned_cols=47 Identities=15% Similarity=0.158 Sum_probs=43.9
Q ss_pred CChHHHHHHHHhcCCCCCCcE-EEEecCc-cchhcccccccccCCeEEEeecC
Q 024415 189 GPKVEVLKQLQKKPELQGMTL-HFVEDRL-ATLKNVIKEPELDGWNLYLGDWG 239 (268)
Q Consensus 189 ~pk~~~~~~~~~~~~~~~~~~-l~IGDs~-~Di~~~~~~A~~aG~~~v~v~~g 239 (268)
||+|.+++.+.++.+..++++ +||||+. .|+.+ |+++|+.+++|.||
T Consensus 188 KP~~~~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~----A~~~G~~~i~v~~G 236 (236)
T TIGR01460 188 KPSPAIYRAALNLLQARPERRDVMVGDNLRTDILG----AKNAGFDTLLVLTG 236 (236)
T ss_pred CCCHHHHHHHHHHhCCCCccceEEECCCcHHHHHH----HHHCCCcEEEEecC
Confidence 699999999999999988887 9999998 89999 99999999999886
No 134
>PLN02887 hydrolase family protein
Probab=98.06 E-value=5e-05 Score=71.18 Aligned_cols=59 Identities=10% Similarity=0.007 Sum_probs=47.1
Q ss_pred ChHHHHHHHHhcCCCCCCcEEEEecCccchhcccccccccCCeEEEeecCCCCHHHHHhhcCCCCEEEcC
Q 024415 190 PKVEVLKQLQKKPELQGMTLHFVEDRLATLKNVIKEPELDGWNLYLGDWGYNTQKEREEAASIPRIQLLQ 259 (268)
Q Consensus 190 pk~~~~~~~~~~~~~~~~~~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~~~~p~~~~~~ 259 (268)
.|..+++.+++.+++++++++.|||+.+|+.| -+.+|. .|++. |..++.++. .+++..+
T Consensus 507 SKG~ALk~L~e~lGI~~eeviAFGDs~NDIeM----Le~AG~-gVAMg---NA~eeVK~~---Ad~VT~s 565 (580)
T PLN02887 507 SKGNGVKMLLNHLGVSPDEIMAIGDGENDIEM----LQLASL-GVALS---NGAEKTKAV---ADVIGVS 565 (580)
T ss_pred CHHHHHHHHHHHcCCCHHHEEEEecchhhHHH----HHHCCC-EEEeC---CCCHHHHHh---CCEEeCC
Confidence 89999999999999999999999999999999 999997 44444 344566653 4455544
No 135
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=98.05 E-value=7.2e-06 Score=68.12 Aligned_cols=83 Identities=18% Similarity=0.261 Sum_probs=61.1
Q ss_pred CCCCChHHHH---HcCCCeEEEEcCCCH---HHHHHHHHHhcCCCCCCCeEEecCC--CC------hHHHHHHHHhc-CC
Q 024415 139 RFYPGIPDAL---KFASSRIYIVTTKQS---RFADALLRELAGVTIPPDRIYGLGT--GP------KVEVLKQLQKK-PE 203 (268)
Q Consensus 139 ~~~pg~~e~L---~~~g~~i~ivTn~~~---~~~~~~l~~~~gl~~~f~~i~~~~~--~p------k~~~~~~~~~~-~~ 203 (268)
+..||+.+++ +++|+.|+++||.+. .....-|.+ .|+..+-..++-.+. .+ |....+.+.++ +.
T Consensus 115 ~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T~~nL~~-~G~~~~~~l~lr~~~~~~~~~~~~yK~~~r~~i~~~Gy~ 193 (229)
T PF03767_consen 115 PAIPGALELYNYARSRGVKVFFITGRPESQREATEKNLKK-AGFPGWDHLILRPDKDPSKKSAVEYKSERRKEIEKKGYR 193 (229)
T ss_dssp EEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHHHHHHHH-HTTSTBSCGEEEEESSTSS------SHHHHHHHHHTTEE
T ss_pred cccHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHHHHHH-cCCCccchhccccccccccccccccchHHHHHHHHcCCc
Confidence 7889999999 699999999999754 455566777 698765444544322 12 56677777777 66
Q ss_pred CCCCcEEEEecCccchhcccccccccC
Q 024415 204 LQGMTLHFVEDRLATLKNVIKEPELDG 230 (268)
Q Consensus 204 ~~~~~~l~IGDs~~Di~~~~~~A~~aG 230 (268)
+. ++|||..+|+.. ++..|
T Consensus 194 Ii----~~iGD~~~D~~~----~~~~~ 212 (229)
T PF03767_consen 194 II----ANIGDQLSDFSG----AKTAG 212 (229)
T ss_dssp EE----EEEESSGGGCHC----THHHH
T ss_pred EE----EEeCCCHHHhhc----ccccc
Confidence 76 999999999999 65543
No 136
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=98.02 E-value=1.5e-05 Score=72.14 Aligned_cols=97 Identities=18% Similarity=0.226 Sum_probs=66.9
Q ss_pred CCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCC--------CCCCCeEEecCCCCh----------------
Q 024415 139 RFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGV--------TIPPDRIYGLGTGPK---------------- 191 (268)
Q Consensus 139 ~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl--------~~~f~~i~~~~~~pk---------------- 191 (268)
..-|.+..+| |++|.++.++||++-.++...+..++|- .++||.|++...||.
T Consensus 183 ~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~dW~dlFDvVIv~A~KP~FF~~~~pfr~vd~~~g 262 (448)
T PF05761_consen 183 HKDPKLPPWLERLRSAGKKLFLITNSPFDYTNAVMSYLLGPFLGEDPDWRDLFDVVIVDARKPGFFTEGRPFREVDTETG 262 (448)
T ss_dssp E--CHHHHHHHHHHCCT-EEEEE-SS-HHHHHHHHHHHCGCCSSTTT-GGGCECEEEES--CCHHHCT---EEEEETTTS
T ss_pred cCCchHHHHHHHHHhcCceEEEecCCCCchhhhhhhhccCCCCCCCCChhhheeEEEEcCCCCcccCCCCceEEEECCCC
Confidence 3456777777 7999999999999999999999986654 478999998776553
Q ss_pred ------------------HHHHHHHHhcCCCCCCcEEEEecCc-cchhcccccccc-cCCeEEEeecC
Q 024415 192 ------------------VEVLKQLQKKPELQGMTLHFVEDRL-ATLKNVIKEPEL-DGWNLYLGDWG 239 (268)
Q Consensus 192 ------------------~~~~~~~~~~~~~~~~~~l~IGDs~-~Di~~~~~~A~~-aG~~~v~v~~g 239 (268)
.--+..+.+..+....+++||||+. .||.. ++. .||.+++|-..
T Consensus 263 ~l~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~g~~VLY~GDhi~~Di~~----~k~~~gWrT~~Ii~E 326 (448)
T PF05761_consen 263 KLKWGKYVGPLEKGKVYSGGNWDQLHKLLGWRGKEVLYFGDHIYGDILK----SKKRHGWRTAAIIPE 326 (448)
T ss_dssp SEECS---SS--TC-EEEE--HHHHHHHCT--GGGEEEEESSTTTTHHH----HHHHH-SEEEEE-TT
T ss_pred ccccccccccccCCCEeecCCHHHHHHHHccCCCeEEEECCchhhhhhh----hccccceEEEEEehh
Confidence 1123555666677789999999995 79999 554 59999999753
No 137
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=98.01 E-value=0.00014 Score=61.23 Aligned_cols=99 Identities=20% Similarity=0.262 Sum_probs=71.8
Q ss_pred CCCChHHHH---HcCCCeEEEEcCCCHHHHHHH---HHHhcCCCCCCC-----eEE------ecC-------------CC
Q 024415 140 FYPGIPDAL---KFASSRIYIVTTKQSRFADAL---LRELAGVTIPPD-----RIY------GLG-------------TG 189 (268)
Q Consensus 140 ~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~---l~~~~gl~~~f~-----~i~------~~~-------------~~ 189 (268)
.-+.+.+++ +.+|+++..+|..+..+.... |+. +|+...-. .++ ... .+
T Consensus 82 ie~~~~~~i~~lq~~~~~v~alT~~~~~~~~~t~~~Lk~-~gi~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~GIlft~~ 160 (252)
T PF11019_consen 82 IESDVPNIINSLQNKGIPVIALTARGPNMEDWTLRELKS-LGIDFSSSSFPEDGIISFPVFDSALSRAPSFYDGILFTGG 160 (252)
T ss_pred cchhHHHHHHHHHHCCCcEEEEcCCChhhHHHHHHHHHH-CCCCccccccccCcceecccccCCCCCCceeecCeEEeCC
Confidence 445666666 689999999999876654444 555 56641111 111 000 02
Q ss_pred -ChHHHHHHHHhcCCCCCCcEEEEecCccchhcccccccccCCeEEEeecC
Q 024415 190 -PKVEVLKQLQKKPELQGMTLHFVEDRLATLKNVIKEPELDGWNLYLGDWG 239 (268)
Q Consensus 190 -pk~~~~~~~~~~~~~~~~~~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g 239 (268)
+|.+++..+..+.+..|+.+|||+|+..++..+-+.++..|+.++++.+.
T Consensus 161 ~~KG~~L~~fL~~~~~~pk~IIfIDD~~~nl~sv~~a~k~~~I~f~G~~Yt 211 (252)
T PF11019_consen 161 QDKGEVLKYFLDKINQSPKKIIFIDDNKENLKSVEKACKKSGIDFIGFHYT 211 (252)
T ss_pred CccHHHHHHHHHHcCCCCCeEEEEeCCHHHHHHHHHHHhhCCCcEEEEEEc
Confidence 78999999999999999999999999887777555588899999999865
No 138
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=98.00 E-value=3.6e-05 Score=76.41 Aligned_cols=113 Identities=18% Similarity=0.229 Sum_probs=80.7
Q ss_pred CCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCC--------------------------eEEecCCC
Q 024415 139 RFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPD--------------------------RIYGLGTG 189 (268)
Q Consensus 139 ~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~--------------------------~i~~~~~~ 189 (268)
+++||+.+.+ ++.|+++.++|+.....+....+. .|+...-. .++.+...
T Consensus 537 plr~~v~e~I~~l~~aGI~v~miTGD~~~tA~~ia~~-~gi~~~~~~v~~~~~~g~~l~~~~~~~~~~~~~~~~v~ar~~ 615 (917)
T TIGR01116 537 PPRPEVADAIEKCRTAGIRVIMITGDNKETAEAICRR-IGIFSPDEDVTFKSFTGREFDEMGPAKQRAACRSAVLFSRVE 615 (917)
T ss_pred CCchhHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHH-cCCCCCCccccceeeeHHHHhhCCHHHHHHhhhcCeEEEecC
Confidence 7899999999 799999999999999999999999 79853211 11222222
Q ss_pred --ChHHHHHHHHhcCCCCCCcEEEEecCccchhcccccccccCCeEEEeecCCCCHHHHHhhcCCCCEEEcC--HhHHHh
Q 024415 190 --PKVEVLKQLQKKPELQGMTLHFVEDRLATLKNVIKEPELDGWNLYLGDWGYNTQKEREEAASIPRIQLLQ--LSDFSR 265 (268)
Q Consensus 190 --pk~~~~~~~~~~~~~~~~~~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~~~~p~~~~~~--~~~l~~ 265 (268)
.|.++++.+... .+.+.|+||+.+|+.+ .+.|++ ++..|.++ +..+ ..+|+++.+ +..+.+
T Consensus 616 P~~K~~iV~~lq~~----g~~va~iGDG~ND~~a----lk~AdV---Gia~g~g~-~~ak---~aAD~vl~dd~f~~i~~ 680 (917)
T TIGR01116 616 PSHKSELVELLQEQ----GEIVAMTGDGVNDAPA----LKKADI---GIAMGSGT-EVAK---EASDMVLADDNFATIVA 680 (917)
T ss_pred HHHHHHHHHHHHhc----CCeEEEecCCcchHHH----HHhCCe---eEECCCCc-HHHH---HhcCeEEccCCHHHHHH
Confidence 346667766543 4566999999999999 999998 33444332 2323 247898877 887776
Q ss_pred hc
Q 024415 266 KL 267 (268)
Q Consensus 266 ~l 267 (268)
++
T Consensus 681 ~i 682 (917)
T TIGR01116 681 AV 682 (917)
T ss_pred HH
Confidence 54
No 139
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=97.89 E-value=0.00015 Score=61.08 Aligned_cols=81 Identities=15% Similarity=0.132 Sum_probs=54.7
Q ss_pred hccCCCCCChHHHH---HcCCCeEEEEcCCCHHH---HHHHHHHhcCCCCCCCeEEec-C-CC-------ChHHHHHHHH
Q 024415 135 IGANRFYPGIPDAL---KFASSRIYIVTTKQSRF---ADALLRELAGVTIPPDRIYGL-G-TG-------PKVEVLKQLQ 199 (268)
Q Consensus 135 ~~~~~~~pg~~e~L---~~~g~~i~ivTn~~~~~---~~~~l~~~~gl~~~f~~i~~~-~-~~-------pk~~~~~~~~ 199 (268)
....+..||+.++. +++|++|+++||.+... ...-|++ .|+..+ +.++-. . +. -|.+.-+++.
T Consensus 141 ~~~ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~~NL~k-aGy~~~-~~LiLR~~~D~~~~~av~yKs~~R~~li 218 (275)
T TIGR01680 141 KGEAPALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTEANLKK-AGYHTW-EKLILKDPQDNSAENAVEYKTAARAKLI 218 (275)
T ss_pred cccCCCChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHH-cCCCCc-ceeeecCCCCCccchhHHHHHHHHHHHH
Confidence 34567889999998 59999999999997643 4445666 688655 433332 2 11 1333334444
Q ss_pred h-cCCCCCCcEEEEecCccchhc
Q 024415 200 K-KPELQGMTLHFVEDRLATLKN 221 (268)
Q Consensus 200 ~-~~~~~~~~~l~IGDs~~Di~~ 221 (268)
+ .+.+- ..|||..+|+.+
T Consensus 219 ~eGYrIv----~~iGDq~sDl~G 237 (275)
T TIGR01680 219 QEGYNIV----GIIGDQWNDLKG 237 (275)
T ss_pred HcCceEE----EEECCCHHhccC
Confidence 3 46666 999999999987
No 140
>KOG2630 consensus Enolase-phosphatase E-1 [Amino acid transport and metabolism]
Probab=97.87 E-value=9.9e-05 Score=59.84 Aligned_cols=144 Identities=12% Similarity=0.069 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhccCCCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcC-------CCCCCCe
Q 024415 113 DALVDLFGKVRDEWMDKDLTTWIGANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAG-------VTIPPDR 182 (268)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~g-------l~~~f~~ 182 (268)
++....++...-.+++...+.-.-....++++...+ +..|++++|.|+++...+..+... -+ +..|||.
T Consensus 97 d~k~t~~K~lQg~iw~~gy~sg~lk~~v~aDv~~a~e~w~~~g~~vyIYSSgsv~AqKllfg~-s~~gdl~~y~~gyfDt 175 (254)
T KOG2630|consen 97 DEKRTILKQLQGRIWAAGYESGELKAHVYADVLPAIERWSGEGVRVYIYSSGSVAAQKLLFGY-SDAGDLRKYISGYFDT 175 (254)
T ss_pred hcccchhHHHHHHHHHhhcccccccccccchhHHHHHHHhhcCceEEEEcCCcHHHHHHHHcc-cCcchHHHHhhhhhhc
Confidence 344455556666666554333233348899999999 589999999999988776665544 22 2234444
Q ss_pred EEecCCCChHHHHHHHHhcCCCCCCcEEEEecCccchhcccccccccCCeEEEeecCCCCHHHHHhhcCCCCEEEcCHhH
Q 024415 183 IYGLGTGPKVEVLKQLQKKPELQGMTLHFVEDRLATLKNVIKEPELDGWNLYLGDWGYNTQKEREEAASIPRIQLLQLSD 262 (268)
Q Consensus 183 i~~~~~~pk~~~~~~~~~~~~~~~~~~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~~~~p~~~~~~~~~ 262 (268)
-+|. |-..+.+..+....+.++.+++|.-|-+.-..+ |+.+|+.+..+.++-|.+ ....++.. --++.+++.
T Consensus 176 ~iG~--K~e~~sy~~I~~~Ig~s~~eiLfLTd~~~Ea~a----a~~aGl~a~l~~rPgna~-l~dd~~~~-y~~i~~F~~ 247 (254)
T KOG2630|consen 176 TIGL--KVESQSYKKIGHLIGKSPREILFLTDVPREAAA----ARKAGLQAGLVSRPGNAP-LPDDAKVE-YCVIWSFEI 247 (254)
T ss_pred cccc--eehhHHHHHHHHHhCCChhheEEeccChHHHHH----HHhcccceeeeecCCCCC-CCcccccc-eeeeccchh
Confidence 2221 245778888988999999999999999999999 999999888777663322 22222211 235666666
Q ss_pred HHh
Q 024415 263 FSR 265 (268)
Q Consensus 263 l~~ 265 (268)
|.+
T Consensus 248 l~~ 250 (254)
T KOG2630|consen 248 LEN 250 (254)
T ss_pred hhc
Confidence 554
No 141
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=97.84 E-value=0.00017 Score=56.40 Aligned_cols=88 Identities=18% Similarity=0.269 Sum_probs=51.9
Q ss_pred CCChHHHH---HcCCCeEEEEcCCCHHHHH---HHHHHh--cCCCCCCCeEEecCC-------------CC---hHHHHH
Q 024415 141 YPGIPDAL---KFASSRIYIVTTKQSRFAD---ALLREL--AGVTIPPDRIYGLGT-------------GP---KVEVLK 196 (268)
Q Consensus 141 ~pg~~e~L---~~~g~~i~ivTn~~~~~~~---~~l~~~--~gl~~~f~~i~~~~~-------------~p---k~~~~~ 196 (268)
.||+.+++ +++|++++++|+++..... ..+..+ .|...+...++++.. .| |.+.++
T Consensus 29 ~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~~~~~~~~~lp~g~li~~~g~~~~~~~~e~i~~~~~~~K~~~l~ 108 (157)
T smart00775 29 HPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLSQIKQDGHNLPHGPVLLSPDRLFAALHREVISKKPEVFKIACLR 108 (157)
T ss_pred CHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHHHhhhccccCCCceEEEcCCcchhhhhcccccCCHHHHHHHHHH
Confidence 35666666 5899999999999877764 455541 022212223443321 13 455666
Q ss_pred HHHhcCCCCCCcE-EEEecCccchhcccccccccCCe
Q 024415 197 QLQKKPELQGMTL-HFVEDRLATLKNVIKEPELDGWN 232 (268)
Q Consensus 197 ~~~~~~~~~~~~~-l~IGDs~~Di~~~~~~A~~aG~~ 232 (268)
.+...+...-... +.+||+.+|+.+ =+++|+.
T Consensus 109 ~i~~~~~~~~~~f~~~~gn~~~D~~~----y~~~gi~ 141 (157)
T smart00775 109 DIKSLFPPQGNPFYAGFGNRITDVIS----YSAVGIP 141 (157)
T ss_pred HHHHhcCCCCCCEEEEeCCCchhHHH----HHHcCCC
Confidence 6665433211122 346777999999 8889984
No 142
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=97.77 E-value=5.4e-05 Score=58.31 Aligned_cols=90 Identities=18% Similarity=0.184 Sum_probs=59.3
Q ss_pred CChHHHH--HcCCCeEEEEcCCCHHHHHHHHHHhcCC-CCCCCeEEecCCCChHHHHHHHHhcCCCCCCcEEEEecCc-c
Q 024415 142 PGIPDAL--KFASSRIYIVTTKQSRFADALLRELAGV-TIPPDRIYGLGTGPKVEVLKQLQKKPELQGMTLHFVEDRL-A 217 (268)
Q Consensus 142 pg~~e~L--~~~g~~i~ivTn~~~~~~~~~l~~~~gl-~~~f~~i~~~~~~pk~~~~~~~~~~~~~~~~~~l~IGDs~-~ 217 (268)
.++...| .+...+++.+|...+.+.+..-.. +.. ..++|.+.-.+...|-++++ ..+++ +|+.|+. +
T Consensus 75 q~v~~~L~~~~e~~~L~~itar~~dl~~iT~~~-l~~q~ih~~~l~i~g~h~KV~~vr----th~id----lf~ed~~~n 145 (194)
T COG5663 75 QLVKQVLPSLKEEHRLIYITARKADLTRITYAW-LFIQNIHYDHLEIVGLHHKVEAVR----THNID----LFFEDSHDN 145 (194)
T ss_pred HHHHHHhHHHHhhceeeeeehhhHHHHHHHHHH-HHHhccchhhhhhhcccccchhhH----hhccC----ccccccCch
Confidence 3555666 466688999998877776665554 222 34566542222223444444 34566 9999995 5
Q ss_pred chhcccccccccCCeEEEeecCCCCHH
Q 024415 218 TLKNVIKEPELDGWNLYLGDWGYNTQK 244 (268)
Q Consensus 218 Di~~~~~~A~~aG~~~v~v~~g~~~~~ 244 (268)
=++. |+++|++++.+++.||...
T Consensus 146 a~~i----Ak~~~~~vilins~ynRkp 168 (194)
T COG5663 146 AGQI----AKNAGIPVILINSPYNRKP 168 (194)
T ss_pred HHHH----HHhcCCcEEEecCcccccc
Confidence 6666 9999999999999987543
No 143
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=97.68 E-value=0.002 Score=59.51 Aligned_cols=115 Identities=11% Similarity=-0.033 Sum_probs=67.6
Q ss_pred HhCCCHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCChHHHHHcCCCeEEEEcCCCHHHHHHHHHHhcCCCCC-------
Q 024415 107 DWSENRDALVDLFGKVRDEWMDKDLTTWIGANRFYPGIPDALKFASSRIYIVTTKQSRFADALLRELAGVTIP------- 179 (268)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~e~L~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~------- 179 (268)
..|.+.+++....+++...+.... ++|...+.++++|.+ +|+|..++.+++...+.++|++..
T Consensus 87 f~G~~~~el~~~~r~~l~~f~~~~---------l~~~a~~~~~~~g~~-vvVSASp~~~Vepfa~~~LGid~VIgTeLev 156 (497)
T PLN02177 87 FAGLKIRDIELVSRSVLPKFYAED---------VHPETWRVFNSFGKR-YIITASPRIMVEPFVKTFLGADKVLGTELEV 156 (497)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHh---------cCHHHHHHHHhCCCE-EEEECCcHHHHHHHHHHcCCCCEEEecccEE
Confidence 346666665555455555554322 667777777777765 999999999999999753476522
Q ss_pred -CCeEEecC-CCCh----HHHHHHHHhcCCCCCCcEEEEecCccchhcccccccccCCeEEEee
Q 024415 180 -PDRIYGLG-TGPK----VEVLKQLQKKPELQGMTLHFVEDRLATLKNVIKEPELDGWNLYLGD 237 (268)
Q Consensus 180 -f~~i~~~~-~~pk----~~~~~~~~~~~~~~~~~~l~IGDs~~Di~~~~~~A~~aG~~~v~v~ 237 (268)
.+..+++. .+++ .+-.+++.+..+..... ...|||.+|..+ -..++- .++|.
T Consensus 157 ~~~G~~TG~i~g~~~c~Ge~Kv~rl~~~~g~~~~~-~aYgDS~sD~pl----L~~a~e-~y~V~ 214 (497)
T PLN02177 157 SKSGRATGFMKKPGVLVGDHKRDAVLKEFGDALPD-LGLGDRETDHDF----MSICKE-GYMVP 214 (497)
T ss_pred CcCCEEeeeecCCCCCccHHHHHHHHHHhCCCCce-EEEECCccHHHH----HHhCCc-cEEeC
Confidence 12223222 1221 22233333444433222 899999999999 777773 44444
No 144
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=97.62 E-value=0.00015 Score=59.79 Aligned_cols=71 Identities=14% Similarity=0.095 Sum_probs=52.1
Q ss_pred EcCCCHHHHHHHHHHhcCCC----CCCCeEEecCCCChHHHHHHHHhcCCCCCCcEEEEecCccchhcccccccccCCeE
Q 024415 158 VTTKQSRFADALLRELAGVT----IPPDRIYGLGTGPKVEVLKQLQKKPELQGMTLHFVEDRLATLKNVIKEPELDGWNL 233 (268)
Q Consensus 158 vTn~~~~~~~~~l~~~~gl~----~~f~~i~~~~~~pk~~~~~~~~~~~~~~~~~~l~IGDs~~Di~~~~~~A~~aG~~~ 233 (268)
.++.....+...+.. .++. .+|..|...+. .|+.+++.+++.++++++++++|||+.+|+.+ .+.+|..+
T Consensus 145 ~~~~~~~~~~~~l~~-~~~~~~~~~~~~ei~~~~~-~Kg~al~~l~~~lgi~~~~vi~~GD~~NDi~m----l~~ag~~v 218 (221)
T TIGR02463 145 DSDSRMPRFTALLAD-LGLAIVQGNRFSHVLGASS-SKGKAANWLKATYNQPDVKTLGLGDGPNDLPL----LEVADYAV 218 (221)
T ss_pred CchhHHHHHHHHHHH-cCCeEEecCCeeEEecCCC-CHHHHHHHHHHHhCCCCCcEEEECCCHHHHHH----HHhCCceE
Confidence 344555556666776 5664 33333333222 68889999999999999999999999999999 99999754
Q ss_pred E
Q 024415 234 Y 234 (268)
Q Consensus 234 v 234 (268)
+
T Consensus 219 a 219 (221)
T TIGR02463 219 V 219 (221)
T ss_pred E
Confidence 4
No 145
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=97.59 E-value=0.00017 Score=59.27 Aligned_cols=95 Identities=11% Similarity=0.056 Sum_probs=65.4
Q ss_pred CeEEEEcCCCHHHHHHHHHHhcCCCCCCC---eEEecCCCChHHHHHHHHhcCCCCCCcEEEEecCccchhccccccccc
Q 024415 153 SRIYIVTTKQSRFADALLRELAGVTIPPD---RIYGLGTGPKVEVLKQLQKKPELQGMTLHFVEDRLATLKNVIKEPELD 229 (268)
Q Consensus 153 ~~i~ivTn~~~~~~~~~l~~~~gl~~~f~---~i~~~~~~pk~~~~~~~~~~~~~~~~~~l~IGDs~~Di~~~~~~A~~a 229 (268)
..++++++.........++. .++...+. .-+......|..+++.+++.++++++++++|||+.+|+.+ .+.+
T Consensus 108 ~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~ei~~~~~~K~~~i~~l~~~~~i~~~~~i~iGDs~ND~~m----l~~a 182 (215)
T TIGR01487 108 SLVIMREGKDVDEVREIIKE-RGLNLVDSGFAIHIMKKGVDKGVGVEKLKELLGIKPEEVAAIGDSENDIDL----FRVV 182 (215)
T ss_pred EEEEecCCccHHHHHHHHHh-CCeEEEecCceEEEecCCCChHHHHHHHHHHhCCCHHHEEEECCCHHHHHH----HHhC
Confidence 34455677666777777777 56643321 1122222388999999999999999999999999999999 9999
Q ss_pred CCeEEEeecCCCCHHHHHhhcCCCCEEEcC
Q 024415 230 GWNLYLGDWGYNTQKEREEAASIPRIQLLQ 259 (268)
Q Consensus 230 G~~~v~v~~g~~~~~~~~~~~~~p~~~~~~ 259 (268)
|+.+. +. |..+++++. .+++..+
T Consensus 183 g~~va-m~---na~~~~k~~---A~~v~~~ 205 (215)
T TIGR01487 183 GFKVA-VA---NADDQLKEI---ADYVTSN 205 (215)
T ss_pred CCeEE-cC---CccHHHHHh---CCEEcCC
Confidence 97544 33 344566653 3465543
No 146
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=97.58 E-value=0.00055 Score=58.35 Aligned_cols=81 Identities=6% Similarity=-0.056 Sum_probs=52.5
Q ss_pred HcCCCeEEEE-cCCCHHHHHHHHHHhcCCC----CCCCeEEe------------------cC--CCChHHHHHHHHhcCC
Q 024415 149 KFASSRIYIV-TTKQSRFADALLRELAGVT----IPPDRIYG------------------LG--TGPKVEVLKQLQKKPE 203 (268)
Q Consensus 149 ~~~g~~i~iv-Tn~~~~~~~~~l~~~~gl~----~~f~~i~~------------------~~--~~pk~~~~~~~~~~~~ 203 (268)
+++-+.--++ +...... ...+.. .|+. ..|-++.+ .+ ..+|..+++.+.+.+.
T Consensus 144 ~~Re~SEp~~w~~~~~~~-~~~~~~-~g~~~~~GgRf~H~l~~~~~~~~~~~~~~~~~~~~~~~~~dKg~A~~~L~~~y~ 221 (302)
T PRK12702 144 QKREYSEIFSYSGDPARL-REAFAQ-QEANLTQHLLRLHQLHFSDLPQWYLTGWMQPTLAAEPNSLPGEQAVQLLLDCYQ 221 (302)
T ss_pred HhccCCcceEecCCHHHH-HHHHHH-cCCeEEecCceEEecccccccccccccccccccccccCCCCHHHHHHHHHHHHH
Confidence 3444544444 5555544 666666 5764 23444444 21 2278888877777655
Q ss_pred CC--CCcEEEEecCccchhcccccccccCCeEEE
Q 024415 204 LQ--GMTLHFVEDRLATLKNVIKEPELDGWNLYL 235 (268)
Q Consensus 204 ~~--~~~~l~IGDs~~Di~~~~~~A~~aG~~~v~ 235 (268)
.. +-.++-+|||++|+.+ -..+-+.+|.
T Consensus 222 ~~~~~~~tiaLGDspND~~m----Le~~D~~vvi 251 (302)
T PRK12702 222 RHLGPIKALGIGCSPPDLAF----LRWSEQKVVL 251 (302)
T ss_pred hccCCceEEEecCChhhHHH----HHhCCeeEEe
Confidence 43 5688999999999999 8888876664
No 147
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=97.55 E-value=0.00055 Score=56.09 Aligned_cols=81 Identities=14% Similarity=0.225 Sum_probs=59.1
Q ss_pred ccCCCCCChHHHH---HcCCCeEEEEcCCCHHH----HHHHHHHhcCCCCCCC-eE-EecCCCChHHHHHHHHhcCCCCC
Q 024415 136 GANRFYPGIPDAL---KFASSRIYIVTTKQSRF----ADALLRELAGVTIPPD-RI-YGLGTGPKVEVLKQLQKKPELQG 206 (268)
Q Consensus 136 ~~~~~~pg~~e~L---~~~g~~i~ivTn~~~~~----~~~~l~~~~gl~~~f~-~i-~~~~~~pk~~~~~~~~~~~~~~~ 206 (268)
....+.||+.|+| .++|..|..+||+..+. ...-|++ .|+....+ .+ +-.+.+||..-.+.+.+.+.+.
T Consensus 119 ~~sk~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~~~~~~T~~nLk~-~g~~~~~~~~~llkk~~k~Ke~R~~~v~k~~~iV- 196 (274)
T COG2503 119 KKSKAVPGAVEFLNYVNSNGGKIFYISNRDQENEKDGTIENLKS-EGLPQVLESHLLLKKDKKSKEVRRQAVEKDYKIV- 196 (274)
T ss_pred cccccCccHHHHHHHHHhcCcEEEEEeccchhcccchhHHHHHH-cCcccccccceEEeeCCCcHHHHHHHHhhcccee-
Confidence 3456889999999 59999999999998776 3344566 57764432 23 3333348877777787777777
Q ss_pred CcEEEEecCccchhc
Q 024415 207 MTLHFVEDRLATLKN 221 (268)
Q Consensus 207 ~~~l~IGDs~~Di~~ 221 (268)
++|||...|...
T Consensus 197 ---m~vGDNl~DF~d 208 (274)
T COG2503 197 ---MLVGDNLDDFGD 208 (274)
T ss_pred ---eEecCchhhhcc
Confidence 999999887765
No 148
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=97.48 E-value=0.00025 Score=55.30 Aligned_cols=78 Identities=17% Similarity=0.149 Sum_probs=58.3
Q ss_pred ccCCCCCChHHHHH--cCCCeEEEEcCCCHHHHHHHHHHhcCCC-CCC-CeEEecCC--CChHHHHHHHHhcCCCCCCcE
Q 024415 136 GANRFYPGIPDALK--FASSRIYIVTTKQSRFADALLRELAGVT-IPP-DRIYGLGT--GPKVEVLKQLQKKPELQGMTL 209 (268)
Q Consensus 136 ~~~~~~pg~~e~L~--~~g~~i~ivTn~~~~~~~~~l~~~~gl~-~~f-~~i~~~~~--~pk~~~~~~~~~~~~~~~~~~ 209 (268)
....++||+.++|+ +.++.++|+|++.+..+..+++. ++.. .+| +.+++.+. ++...- +..-.+.....+
T Consensus 55 ~~v~~rPgv~efL~~l~~~yel~I~T~~~~~yA~~vl~~-ldp~~~~F~~ri~~rd~~~~~~~Kd---L~~i~~~d~~~v 130 (156)
T TIGR02250 55 YLTKLRPFLHEFLKEASKLYEMHVYTMGTRAYAQAIAKL-IDPDGKYFGDRIISRDESGSPHTKS---LLRLFPADESMV 130 (156)
T ss_pred EEEEECCCHHHHHHHHHhhcEEEEEeCCcHHHHHHHHHH-hCcCCCeeccEEEEeccCCCCcccc---HHHHcCCCcccE
Confidence 44578999999992 56699999999999999999999 7887 478 67787765 232222 222234566778
Q ss_pred EEEecCcc
Q 024415 210 HFVEDRLA 217 (268)
Q Consensus 210 l~IGDs~~ 217 (268)
++|+|++.
T Consensus 131 vivDd~~~ 138 (156)
T TIGR02250 131 VIIDDRED 138 (156)
T ss_pred EEEeCCHH
Confidence 99999974
No 149
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=97.47 E-value=0.00093 Score=63.87 Aligned_cols=108 Identities=19% Similarity=0.167 Sum_probs=77.9
Q ss_pred CCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecCCC-ChHHHHHHHHhcCCCCCCcEEEEec
Q 024415 139 RFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGTG-PKVEVLKQLQKKPELQGMTLHFVED 214 (268)
Q Consensus 139 ~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~~~-pk~~~~~~~~~~~~~~~~~~l~IGD 214 (268)
++.||+++.+ ++.|+++.++|+.....+....+. .|+.+ +++.... -|.+.++.++.+-.. +.|+||
T Consensus 445 ~~R~~~~eai~~Lr~~GI~vvMiTGDn~~TA~aIA~e-lGId~----v~A~~~PedK~~iV~~lQ~~G~~----VaMtGD 515 (679)
T PRK01122 445 IVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAE-AGVDD----FLAEATPEDKLALIRQEQAEGRL----VAMTGD 515 (679)
T ss_pred cCchhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHH-cCCcE----EEccCCHHHHHHHHHHHHHcCCe----EEEECC
Confidence 6889999998 799999999999999999999999 89854 3443332 578888888876444 499999
Q ss_pred CccchhcccccccccCCeEEEeecCCCCHHHHHhhcCCCCEEEc--CHhHHHhh
Q 024415 215 RLATLKNVIKEPELDGWNLYLGDWGYNTQKEREEAASIPRIQLL--QLSDFSRK 266 (268)
Q Consensus 215 s~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~~~~p~~~~~--~~~~l~~~ 266 (268)
+.+|..+ -+.|.+ .|++.+| +. .-++ -.|.++. ++..+...
T Consensus 516 GvNDAPA----La~ADV-GIAMgsG--Td-vAke---AADiVLldd~~s~Iv~a 558 (679)
T PRK01122 516 GTNDAPA----LAQADV-GVAMNSG--TQ-AAKE---AGNMVDLDSNPTKLIEV 558 (679)
T ss_pred CcchHHH----HHhCCE-eEEeCCC--CH-HHHH---hCCEEEeCCCHHHHHHH
Confidence 9999999 777775 3344433 32 3333 2445543 56665544
No 150
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=97.45 E-value=0.00057 Score=65.18 Aligned_cols=108 Identities=18% Similarity=0.138 Sum_probs=77.5
Q ss_pred CCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecCCC-ChHHHHHHHHhcCCCCCCcEEEEec
Q 024415 139 RFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGTG-PKVEVLKQLQKKPELQGMTLHFVED 214 (268)
Q Consensus 139 ~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~~~-pk~~~~~~~~~~~~~~~~~~l~IGD 214 (268)
++.||+.+.+ ++.|+++.++|+.....+....+. +|+.+ +++.... .|.+.++.++.+.+ .+.|+||
T Consensus 446 ~~Rp~a~eaI~~l~~~Gi~v~miTGD~~~ta~~iA~~-lGI~~----v~a~~~PedK~~~v~~lq~~g~----~VamvGD 516 (675)
T TIGR01497 446 IVKGGIKERFAQLRKMGIKTIMITGDNRLTAAAIAAE-AGVDD----FIAEATPEDKIALIRQEQAEGK----LVAMTGD 516 (675)
T ss_pred cchhHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHH-cCCCE----EEcCCCHHHHHHHHHHHHHcCC----eEEEECC
Confidence 7889999999 699999999999999999999999 79864 3333221 46888888877644 4699999
Q ss_pred CccchhcccccccccCCeEEEeecCCCCHHHHHhhcCCCCEEE--cCHhHHHhh
Q 024415 215 RLATLKNVIKEPELDGWNLYLGDWGYNTQKEREEAASIPRIQL--LQLSDFSRK 266 (268)
Q Consensus 215 s~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~~~~p~~~~--~~~~~l~~~ 266 (268)
+.+|..+ -+.+++. +++..| +. .-+++ .|+++ ++++.+...
T Consensus 517 G~NDapA----L~~AdvG-iAm~~g--t~-~akea---adivLldd~~s~Iv~a 559 (675)
T TIGR01497 517 GTNDAPA----LAQADVG-VAMNSG--TQ-AAKEA---ANMVDLDSDPTKLIEV 559 (675)
T ss_pred CcchHHH----HHhCCEe-EEeCCC--CH-HHHHh---CCEEECCCCHHHHHHH
Confidence 9999999 8888863 344433 22 33332 34554 345555443
No 151
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.43 E-value=0.00089 Score=64.19 Aligned_cols=109 Identities=19% Similarity=0.231 Sum_probs=76.9
Q ss_pred CCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecCC-CChHHHHHHHHhcCCCCCCcEEEEec
Q 024415 139 RFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGT-GPKVEVLKQLQKKPELQGMTLHFVED 214 (268)
Q Consensus 139 ~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~~-~pk~~~~~~~~~~~~~~~~~~l~IGD 214 (268)
++.|+..+.+ |+.|+++.++|+..+..++.+.+. +|++.++. .-. .-|.+.++++.++. ..+.||||
T Consensus 537 ~~R~~a~~aI~~L~~~Gi~~~mLTGDn~~~A~~iA~~-lGId~v~A----ellPedK~~~V~~l~~~g----~~VamVGD 607 (713)
T COG2217 537 ELRPDAKEAIAALKALGIKVVMLTGDNRRTAEAIAKE-LGIDEVRA----ELLPEDKAEIVRELQAEG----RKVAMVGD 607 (713)
T ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHH-cChHhhec----cCCcHHHHHHHHHHHhcC----CEEEEEeC
Confidence 7889999999 799999999999999999999999 79855432 211 14688899998654 44599999
Q ss_pred CccchhcccccccccCCeEEEeecCCCCHHHHHhhcCCCCEEEc--CHhHHHhhc
Q 024415 215 RLATLKNVIKEPELDGWNLYLGDWGYNTQKEREEAASIPRIQLL--QLSDFSRKL 267 (268)
Q Consensus 215 s~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~~~~p~~~~~--~~~~l~~~l 267 (268)
+.||-.+ -..|-+ ++.-|.++.-..+. .|+++- ++..+...+
T Consensus 608 GINDAPA----LA~AdV---GiAmG~GtDvA~ea----ADvvL~~~dL~~v~~ai 651 (713)
T COG2217 608 GINDAPA----LAAADV---GIAMGSGTDVAIEA----ADVVLMRDDLSAVPEAI 651 (713)
T ss_pred CchhHHH----HhhcCe---eEeecCCcHHHHHh----CCEEEecCCHHHHHHHH
Confidence 9999988 444443 33334334433332 455543 466665543
No 152
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=97.43 E-value=0.0008 Score=64.23 Aligned_cols=108 Identities=14% Similarity=0.068 Sum_probs=77.7
Q ss_pred CCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecCCC-ChHHHHHHHHhcCCCCCCcEEEEec
Q 024415 139 RFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGTG-PKVEVLKQLQKKPELQGMTLHFVED 214 (268)
Q Consensus 139 ~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~~~-pk~~~~~~~~~~~~~~~~~~l~IGD 214 (268)
++.||+++.+ ++.|+++.++|+.+...+..+.+. +|+.++ ++.-.. -|.++++.++++- +.+.|+||
T Consensus 441 p~R~~a~e~I~~Lr~~GI~vvMiTGDn~~TA~aIA~e-lGI~~v----~A~~~PedK~~iV~~lQ~~G----~~VaMtGD 511 (673)
T PRK14010 441 VIKDGLVERFRELREMGIETVMCTGDNELTAATIAKE-AGVDRF----VAECKPEDKINVIREEQAKG----HIVAMTGD 511 (673)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHH-cCCceE----EcCCCHHHHHHHHHHHHhCC----CEEEEECC
Confidence 7899999999 789999999999999999999999 899653 333221 4688888887663 34599999
Q ss_pred CccchhcccccccccCCeEEEeecCCCCHHHHHhhcCCCCEEE--cCHhHHHhh
Q 024415 215 RLATLKNVIKEPELDGWNLYLGDWGYNTQKEREEAASIPRIQL--LQLSDFSRK 266 (268)
Q Consensus 215 s~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~~~~p~~~~--~~~~~l~~~ 266 (268)
+.+|..+ -+.|.+ .|++.+| +. .-++ -.|.++ ++++.+...
T Consensus 512 GvNDAPA----La~ADV-GIAMgsG--Td-vAke---AADiVLldd~ls~Iv~a 554 (673)
T PRK14010 512 GTNDAPA----LAEANV-GLAMNSG--TM-SAKE---AANLIDLDSNPTKLMEV 554 (673)
T ss_pred ChhhHHH----HHhCCE-EEEeCCC--CH-HHHH---hCCEEEcCCCHHHHHHH
Confidence 9999999 788876 3344433 33 3333 244555 456665543
No 153
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=97.41 E-value=0.00076 Score=55.61 Aligned_cols=86 Identities=16% Similarity=0.115 Sum_probs=58.3
Q ss_pred eEEEEcCCCHHHHHHHHHHhcCCCCCC---C-eE-EecCCCChHHHHHHHHhcCCCCCCcEEEEecCccchhcccccccc
Q 024415 154 RIYIVTTKQSRFADALLRELAGVTIPP---D-RI-YGLGTGPKVEVLKQLQKKPELQGMTLHFVEDRLATLKNVIKEPEL 228 (268)
Q Consensus 154 ~i~ivTn~~~~~~~~~l~~~~gl~~~f---~-~i-~~~~~~pk~~~~~~~~~~~~~~~~~~l~IGDs~~Di~~~~~~A~~ 228 (268)
...+.+......+...++. ++....+ . .+ +.....+|..+++.+++.++++++++++|||+.+|+.+ ++.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ei~~~~~~K~~~i~~l~~~~~i~~~~~i~~GD~~NDi~m----~~~ 183 (225)
T TIGR01482 109 LVKMRYGIDVDTVREIIKE-LGLNLVAVDSGFDIHILPQGVNKGVAVKKLKEKLGIKPGETLVCGDSENDIDL----FEV 183 (225)
T ss_pred eEEEeecCCHHHHHHHHHh-cCceEEEecCCcEEEEeeCCCCHHHHHHHHHHHhCCCHHHEEEECCCHhhHHH----HHh
Confidence 3445555556666777777 5643110 0 01 11112389999999999999999999999999999999 999
Q ss_pred cCCeEEEeecCCCCHHHHHh
Q 024415 229 DGWNLYLGDWGYNTQKEREE 248 (268)
Q Consensus 229 aG~~~v~v~~g~~~~~~~~~ 248 (268)
+|.. +++. |..++.++
T Consensus 184 ag~~-vam~---Na~~~~k~ 199 (225)
T TIGR01482 184 PGFG-VAVA---NAQPELKE 199 (225)
T ss_pred cCce-EEcC---ChhHHHHH
Confidence 9985 4443 34445555
No 154
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=97.34 E-value=0.0015 Score=65.35 Aligned_cols=114 Identities=19% Similarity=0.209 Sum_probs=79.1
Q ss_pred CCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCC-----------------------eEEecCC-CCh
Q 024415 139 RFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPD-----------------------RIYGLGT-GPK 191 (268)
Q Consensus 139 ~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~-----------------------~i~~~~~-~pk 191 (268)
++.|++.+++ ++.|+++.++|+.....+..+.+. .|+...-. .+++.-. ..|
T Consensus 579 plr~~~~~aI~~l~~aGI~v~miTGD~~~tA~~iA~~-~GI~~~~~~vi~G~~~~~l~~~el~~~i~~~~Vfar~sPe~K 657 (941)
T TIGR01517 579 PLRPGVREAVQECQRAGITVRMVTGDNIDTAKAIARN-CGILTFGGLAMEGKEFRRLVYEEMDPILPKLRVLARSSPLDK 657 (941)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECCCChHHHHHHHHH-cCCCCCCceEeeHHHhhhCCHHHHHHHhccCeEEEECCHHHH
Confidence 7899999999 699999999999999999999999 89963222 2333222 145
Q ss_pred HHHHHHHHhcCCCCCCcEEEEecCccchhcccccccccCCeEEEeecCCCCHHHHHhhcCCCCEEEc--CHhHHHhhc
Q 024415 192 VEVLKQLQKKPELQGMTLHFVEDRLATLKNVIKEPELDGWNLYLGDWGYNTQKEREEAASIPRIQLL--QLSDFSRKL 267 (268)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~~~~p~~~~~--~~~~l~~~l 267 (268)
.++++.+.++-. .+.|+||+.+|..| -+.|.+ ++.-|.+..+.-++ .+|+++. +++.+...+
T Consensus 658 ~~iV~~lq~~g~----vVam~GDGvNDapA----Lk~AdV---GIAmg~~gtdvAk~---aADivL~dd~f~~I~~~i 721 (941)
T TIGR01517 658 QLLVLMLKDMGE----VVAVTGDGTNDAPA----LKLADV---GFSMGISGTEVAKE---ASDIILLDDNFASIVRAV 721 (941)
T ss_pred HHHHHHHHHCCC----EEEEECCCCchHHH----HHhCCc---ceecCCCccHHHHH---hCCEEEecCCHHHHHHHH
Confidence 778888876533 45999999999999 777776 22223112222222 3677776 677666543
No 155
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=97.26 E-value=0.0015 Score=55.52 Aligned_cols=28 Identities=11% Similarity=0.119 Sum_probs=21.1
Q ss_pred HcCCCeEEEEcCCCHHHHHHHHHHhcCCC
Q 024415 149 KFASSRIYIVTTKQSRFADALLRELAGVT 177 (268)
Q Consensus 149 ~~~g~~i~ivTn~~~~~~~~~l~~~~gl~ 177 (268)
+++|++++++|+++...+...++. +++.
T Consensus 33 ~~~G~~~~iaTGR~~~~~~~~~~~-l~~~ 60 (270)
T PRK10513 33 RAKGVNVVLTTGRPYAGVHRYLKE-LHME 60 (270)
T ss_pred HHCCCEEEEecCCChHHHHHHHHH-hCCC
Confidence 567788888888887777777777 5764
No 156
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=97.26 E-value=0.0019 Score=65.06 Aligned_cols=114 Identities=14% Similarity=0.165 Sum_probs=77.7
Q ss_pred CCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCC----------CeEEecC------------------
Q 024415 139 RFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPP----------DRIYGLG------------------ 187 (268)
Q Consensus 139 ~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f----------~~i~~~~------------------ 187 (268)
++.|++.+++ ++.|+++.++|+.....+..+.+. .|+.... ..++++.
T Consensus 646 p~r~~v~~aI~~l~~aGIkv~MiTGD~~~tA~~iA~~-~Gi~~~~~~~~~~~~~~~~vitG~~l~~l~~~~l~~~~~~~~ 724 (1053)
T TIGR01523 646 PPRNESAGAVEKCHQAGINVHMLTGDFPETAKAIAQE-VGIIPPNFIHDRDEIMDSMVMTGSQFDALSDEEVDDLKALCL 724 (1053)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHH-cCCCCccccccccccccceeeehHHhhhcCHHHHHHHhhcCe
Confidence 7899999999 799999999999999999999999 8995321 1222221
Q ss_pred -----C-CChHHHHHHHHhcCCCCCCcEEEEecCccchhcccccccccCCeEEEeecCCCCHHHHHhhcCCCCEEEcC--
Q 024415 188 -----T-GPKVEVLKQLQKKPELQGMTLHFVEDRLATLKNVIKEPELDGWNLYLGDWGYNTQKEREEAASIPRIQLLQ-- 259 (268)
Q Consensus 188 -----~-~pk~~~~~~~~~~~~~~~~~~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~~~~p~~~~~~-- 259 (268)
. ..|.++++.+...-. .+.|+||+.+|..+ -+.|.+. +.-|.+..+.-++ .+|+++.+
T Consensus 725 V~ar~sP~~K~~iV~~lq~~g~----~Vam~GDGvNDapa----Lk~AdVG---IAmg~~gt~vak~---aADivl~dd~ 790 (1053)
T TIGR01523 725 VIARCAPQTKVKMIEALHRRKA----FCAMTGDGVNDSPS----LKMANVG---IAMGINGSDVAKD---ASDIVLSDDN 790 (1053)
T ss_pred EEEecCHHHHHHHHHHHHhcCC----eeEEeCCCcchHHH----HHhCCcc---EecCCCccHHHHH---hcCEEEecCC
Confidence 1 134667777776533 45999999999999 8888762 2223222223232 36677754
Q ss_pred HhHHHhhc
Q 024415 260 LSDFSRKL 267 (268)
Q Consensus 260 ~~~l~~~l 267 (268)
+..+.+.+
T Consensus 791 f~~I~~~i 798 (1053)
T TIGR01523 791 FASILNAI 798 (1053)
T ss_pred HHHHHHHH
Confidence 77665543
No 157
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=97.23 E-value=0.0005 Score=57.77 Aligned_cols=66 Identities=15% Similarity=0.146 Sum_probs=54.1
Q ss_pred ChHHHHHHHHhcCCCCCCcEEEEecCccchhccccccccc-------CCeEEEeecCCCCHHHHHhhcCCCCEEEcCHhH
Q 024415 190 PKVEVLKQLQKKPELQGMTLHFVEDRLATLKNVIKEPELD-------GWNLYLGDWGYNTQKEREEAASIPRIQLLQLSD 262 (268)
Q Consensus 190 pk~~~~~~~~~~~~~~~~~~l~IGDs~~Di~~~~~~A~~a-------G~~~v~v~~g~~~~~~~~~~~~~p~~~~~~~~~ 262 (268)
.|..+++.+.++++..+.+++||||+.+|+.+ ++.+ |...+.|.+|. ....+++++.++.+
T Consensus 167 ~Kg~a~~~~~~~~~~~~~~~i~iGD~~~D~~~----~~~~~~~~~~~g~~~v~v~~g~--------~~~~A~~~~~~~~~ 234 (244)
T TIGR00685 167 NKGEIVKRLLWHQPGSGISPVYLGDDITDEDA----FRVVNNQWGNYGFYPVPIGSGS--------KKTVAKFHLTGPQQ 234 (244)
T ss_pred CHHHHHHHHHHhcccCCCceEEEcCCCcHHHH----HHHHhcccCCCCeEEEEEecCC--------cCCCceEeCCCHHH
Confidence 56899999999999999999999999999999 7777 66777776552 11356799999999
Q ss_pred HHhhc
Q 024415 263 FSRKL 267 (268)
Q Consensus 263 l~~~l 267 (268)
+.++|
T Consensus 235 v~~~L 239 (244)
T TIGR00685 235 VLEFL 239 (244)
T ss_pred HHHHH
Confidence 88766
No 158
>PRK10976 putative hydrolase; Provisional
Probab=97.23 E-value=0.0011 Score=56.35 Aligned_cols=50 Identities=12% Similarity=0.066 Sum_probs=39.5
Q ss_pred HHHHHHHHhcCCCCCCcEEEEecCccchhcccccccccCCeEEEeecCCCCHHHHHhh
Q 024415 192 VEVLKQLQKKPELQGMTLHFVEDRLATLKNVIKEPELDGWNLYLGDWGYNTQKEREEA 249 (268)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~ 249 (268)
..+++.+++.+++++++++.|||+.+|+.+ -+.+|.. |++. |..+++++.
T Consensus 192 g~al~~l~~~lgi~~~~viafGD~~NDi~M----l~~ag~~-vAm~---NA~~~vK~~ 241 (266)
T PRK10976 192 GHALEAVAKKLGYSLKDCIAFGDGMNDAEM----LSMAGKG-CIMG---NAHQRLKDL 241 (266)
T ss_pred HHHHHHHHHHcCCCHHHeEEEcCCcccHHH----HHHcCCC-eeec---CCcHHHHHh
Confidence 556788888899999999999999999999 8999974 4444 344566653
No 159
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=97.11 E-value=0.0036 Score=62.03 Aligned_cols=110 Identities=17% Similarity=0.158 Sum_probs=75.4
Q ss_pred CCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCC----------------------eEEecCC-CChH
Q 024415 139 RFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPD----------------------RIYGLGT-GPKV 192 (268)
Q Consensus 139 ~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~----------------------~i~~~~~-~pk~ 192 (268)
++.|++.+.+ ++.|+++.++|+.....+..+.+. .|+... + .+++.-. .-|.
T Consensus 515 p~R~~~~~aI~~l~~aGI~vvmiTGD~~~tA~aIA~~-lGI~~~-~v~~g~~l~~~~~~el~~~~~~~~vfAr~~Pe~K~ 592 (867)
T TIGR01524 515 PPKESTKEAIAALFKNGINVKVLTGDNEIVTARICQE-VGIDAN-DFLLGADIEELSDEELARELRKYHIFARLTPMQKS 592 (867)
T ss_pred CCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHH-cCCCCC-CeeecHhhhhCCHHHHHHHhhhCeEEEECCHHHHH
Confidence 7899999999 799999999999999999999999 899521 1 1222222 1456
Q ss_pred HHHHHHHhcCCCCCCcEEEEecCccchhcccccccccCCeEEEeecCCCCHHHHHhhcCCCCEEE--cCHhHHHh
Q 024415 193 EVLKQLQKKPELQGMTLHFVEDRLATLKNVIKEPELDGWNLYLGDWGYNTQKEREEAASIPRIQL--LQLSDFSR 265 (268)
Q Consensus 193 ~~~~~~~~~~~~~~~~~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~~~~p~~~~--~~~~~l~~ 265 (268)
++++.+.++ .+.+.|+||+.+|..+ -+.|.+. |++..| + +.-++ ..|+++ +++..+.+
T Consensus 593 ~iV~~lq~~----G~vVam~GDGvNDapA----Lk~AdVG-IAmg~g--t-dvAk~---aADiVLldd~~~~I~~ 652 (867)
T TIGR01524 593 RIIGLLKKA----GHTVGFLGDGINDAPA----LRKADVG-ISVDTA--A-DIAKE---ASDIILLEKSLMVLEE 652 (867)
T ss_pred HHHHHHHhC----CCEEEEECCCcccHHH----HHhCCEE-EEeCCc--c-HHHHH---hCCEEEecCChHHHHH
Confidence 777777765 2456999999999999 8888873 334433 2 23333 245655 44554443
No 160
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=97.11 E-value=0.003 Score=62.74 Aligned_cols=109 Identities=17% Similarity=0.117 Sum_probs=75.2
Q ss_pred CCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCe-----------------------EEecCCC-Ch
Q 024415 139 RFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDR-----------------------IYGLGTG-PK 191 (268)
Q Consensus 139 ~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~-----------------------i~~~~~~-pk 191 (268)
++.|++.+.+ ++.|+++.++|+.+...+..+.+. .|+.. +. +++.-.. .|
T Consensus 550 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~-lGI~~--~~v~~G~el~~l~~~el~~~~~~~~VfAr~sPe~K 626 (902)
T PRK10517 550 PPKETTAPALKALKASGVTVKILTGDSELVAAKVCHE-VGLDA--GEVLIGSDIETLSDDELANLAERTTLFARLTPMHK 626 (902)
T ss_pred cchhhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHH-cCCCc--cCceeHHHHHhCCHHHHHHHHhhCcEEEEcCHHHH
Confidence 7889999999 799999999999999999999999 89952 22 2222221 35
Q ss_pred HHHHHHHHhcCCCCCCcEEEEecCccchhcccccccccCCeEEEeecCCCCHHHHHhhcCCCCEEE--cCHhHHHh
Q 024415 192 VEVLKQLQKKPELQGMTLHFVEDRLATLKNVIKEPELDGWNLYLGDWGYNTQKEREEAASIPRIQL--LQLSDFSR 265 (268)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~~~~p~~~~--~~~~~l~~ 265 (268)
.++++.+..+- +.+.|+||+.+|..+ -+.|.+ .|++.+| + +.-++ -.|+++ +++..+.+
T Consensus 627 ~~IV~~Lq~~G----~vVam~GDGvNDaPA----Lk~ADV-GIAmg~g--t-dvAke---aADiVLldd~~~~I~~ 687 (902)
T PRK10517 627 ERIVTLLKREG----HVVGFMGDGINDAPA----LRAADI-GISVDGA--V-DIARE---AADIILLEKSLMVLEE 687 (902)
T ss_pred HHHHHHHHHCC----CEEEEECCCcchHHH----HHhCCE-EEEeCCc--C-HHHHH---hCCEEEecCChHHHHH
Confidence 67777777653 345999999999999 788876 3344333 2 23333 355666 34555443
No 161
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=97.08 E-value=0.0026 Score=63.22 Aligned_cols=111 Identities=19% Similarity=0.160 Sum_probs=76.9
Q ss_pred CCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCC----------------------eEEecCCC-ChH
Q 024415 139 RFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPD----------------------RIYGLGTG-PKV 192 (268)
Q Consensus 139 ~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~----------------------~i~~~~~~-pk~ 192 (268)
++.|++.+++ ++.|+++.++|+.+...+..+.+. .|+..- + .+++.-.. .|.
T Consensus 550 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~aIA~~-lGI~~~-~vi~G~el~~~~~~el~~~v~~~~VfAr~sPe~K~ 627 (903)
T PRK15122 550 PPKESAAPAIAALRENGVAVKVLTGDNPIVTAKICRE-VGLEPG-EPLLGTEIEAMDDAALAREVEERTVFAKLTPLQKS 627 (903)
T ss_pred ccHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHH-cCCCCC-CccchHhhhhCCHHHHHHHhhhCCEEEEeCHHHHH
Confidence 7889999999 799999999999999999999999 899521 1 12322221 457
Q ss_pred HHHHHHHhcCCCCCCcEEEEecCccchhcccccccccCCeEEEeecCCCCHHHHHhhcCCCCEEE--cCHhHHHhh
Q 024415 193 EVLKQLQKKPELQGMTLHFVEDRLATLKNVIKEPELDGWNLYLGDWGYNTQKEREEAASIPRIQL--LQLSDFSRK 266 (268)
Q Consensus 193 ~~~~~~~~~~~~~~~~~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~~~~p~~~~--~~~~~l~~~ 266 (268)
.+++.+..+- +-+.|+||+.+|..+ -+.|.+- |++.+| +. .-++ -.|+++ +++..+.+.
T Consensus 628 ~iV~~Lq~~G----~vVamtGDGvNDaPA----Lk~ADVG-IAmg~g--td-vAke---aADiVLldd~f~~Iv~a 688 (903)
T PRK15122 628 RVLKALQANG----HTVGFLGDGINDAPA----LRDADVG-ISVDSG--AD-IAKE---SADIILLEKSLMVLEEG 688 (903)
T ss_pred HHHHHHHhCC----CEEEEECCCchhHHH----HHhCCEE-EEeCcc--cH-HHHH---hcCEEEecCChHHHHHH
Confidence 7778887653 445999999999999 7877763 344433 22 2233 355666 456655443
No 162
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=96.92 E-value=0.005 Score=60.12 Aligned_cols=89 Identities=13% Similarity=0.072 Sum_probs=66.1
Q ss_pred CCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCC---Ce-----------------------EEecCCC
Q 024415 139 RFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPP---DR-----------------------IYGLGTG 189 (268)
Q Consensus 139 ~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f---~~-----------------------i~~~~~~ 189 (268)
++.|++.+.+ ++.|+++.++|+.....+..+.+. .|+.... +. +++.-..
T Consensus 442 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~-lGI~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vfAr~~P 520 (755)
T TIGR01647 442 PPRHDTKETIERARHLGVEVKMVTGDHLAIAKETARR-LGLGTNIYTADVLLKGDNRDDLPSGELGEMVEDADGFAEVFP 520 (755)
T ss_pred CChhhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHH-cCCCCCCcCHHHhcCCcchhhCCHHHHHHHHHhCCEEEecCH
Confidence 7899999999 799999999999999999999999 8996420 00 2222221
Q ss_pred -ChHHHHHHHHhcCCCCCCcEEEEecCccchhcccccccccCCeEEEee
Q 024415 190 -PKVEVLKQLQKKPELQGMTLHFVEDRLATLKNVIKEPELDGWNLYLGD 237 (268)
Q Consensus 190 -pk~~~~~~~~~~~~~~~~~~l~IGDs~~Di~~~~~~A~~aG~~~v~v~ 237 (268)
.|..+++.+..+- +.+.|+||+.+|..+ -+.|.+. |++.
T Consensus 521 e~K~~iV~~lq~~G----~~VamvGDGvNDapA----L~~AdVG-IAm~ 560 (755)
T TIGR01647 521 EHKYEIVEILQKRG----HLVGMTGDGVNDAPA----LKKADVG-IAVA 560 (755)
T ss_pred HHHHHHHHHHHhcC----CEEEEEcCCcccHHH----HHhCCee-EEec
Confidence 4566777776553 446999999999999 7877763 3444
No 163
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=96.90 E-value=0.0055 Score=61.62 Aligned_cols=113 Identities=13% Similarity=0.140 Sum_probs=74.6
Q ss_pred CCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCC------------------------CeEEec-----
Q 024415 139 RFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPP------------------------DRIYGL----- 186 (268)
Q Consensus 139 ~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f------------------------~~i~~~----- 186 (268)
++.|++.+.+ +++|+++.++|+.....+....+. .|+...- ..++++
T Consensus 568 plr~~v~~aI~~l~~~Gi~v~~~TGd~~~ta~~ia~~-~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vi~G~~l~~ 646 (997)
T TIGR01106 568 PPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKG-VGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGSDLKD 646 (997)
T ss_pred CChHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHH-cCCCCCCccchhhhhhhccccccccccccccceEEEhHHhhh
Confidence 7889999999 699999999999999999999999 7884211 012221
Q ss_pred --------------------CC-CChHHHHHHHHhcCCCCCCcEEEEecCccchhcccccccccCCeEEEeecCCCCHHH
Q 024415 187 --------------------GT-GPKVEVLKQLQKKPELQGMTLHFVEDRLATLKNVIKEPELDGWNLYLGDWGYNTQKE 245 (268)
Q Consensus 187 --------------------~~-~pk~~~~~~~~~~~~~~~~~~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~ 245 (268)
-. ..|..+++.+.+.- +-+.|+||+.+|+.+ -+.|.+ ++.-|....+.
T Consensus 647 l~~~el~~~~~~~~~~VfaR~sPeqK~~IV~~lq~~g----~vv~~~GDG~ND~pa----Lk~AdV---Giamg~~G~~v 715 (997)
T TIGR01106 647 MTSEQLDEILKYHTEIVFARTSPQQKLIIVEGCQRQG----AIVAVTGDGVNDSPA----LKKADI---GVAMGIAGSDV 715 (997)
T ss_pred CCHHHHHHHHHhcCCEEEEECCHHHHHHHHHHHHHCC----CEEEEECCCcccHHH----HhhCCc---ceecCCcccHH
Confidence 11 13455666665442 346999999999999 888876 33334222223
Q ss_pred HHhhcCCCCEEEcC--HhHHHhh
Q 024415 246 REEAASIPRIQLLQ--LSDFSRK 266 (268)
Q Consensus 246 ~~~~~~~p~~~~~~--~~~l~~~ 266 (268)
.++ -.|+++.+ +.-+.+.
T Consensus 716 ak~---aADivL~dd~f~~Iv~a 735 (997)
T TIGR01106 716 SKQ---AADMILLDDNFASIVTG 735 (997)
T ss_pred HHH---hhceEEecCCHHHHHHH
Confidence 333 35677665 6665543
No 164
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=96.90 E-value=0.0022 Score=53.90 Aligned_cols=52 Identities=15% Similarity=0.026 Sum_probs=44.5
Q ss_pred ChHHHHHHHHhcCCCCCCcEEEEecCccchhcccccccccCCeEEEeecCCCCHHHHHh
Q 024415 190 PKVEVLKQLQKKPELQGMTLHFVEDRLATLKNVIKEPELDGWNLYLGDWGYNTQKEREE 248 (268)
Q Consensus 190 pk~~~~~~~~~~~~~~~~~~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~ 248 (268)
+|..+++.+.+.++++++++++|||+.+|+.+ .+.++...|++.+ ...+++.
T Consensus 167 ~K~~al~~l~~~~~i~~~~~i~~GD~~ND~~m----l~~~~~~~va~~n---a~~~~k~ 218 (249)
T TIGR01485 167 GKGQALQYLLQKLAMEPSQTLVCGDSGNDIEL----FEIGSVRGVIVSN---AQEELLQ 218 (249)
T ss_pred ChHHHHHHHHHHcCCCccCEEEEECChhHHHH----HHccCCcEEEECC---CHHHHHH
Confidence 89999999999999999999999999999999 8887777788764 4445553
No 165
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=96.84 E-value=0.0027 Score=52.91 Aligned_cols=57 Identities=16% Similarity=-0.041 Sum_probs=45.6
Q ss_pred ChHHHHHHHHhcCCCCCCcEEEEecCccchhcccccccccCCeEEEeecCCCCHHHHHhhcCCCC
Q 024415 190 PKVEVLKQLQKKPELQGMTLHFVEDRLATLKNVIKEPELDGWNLYLGDWGYNTQKEREEAASIPR 254 (268)
Q Consensus 190 pk~~~~~~~~~~~~~~~~~~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~~~~p~ 254 (268)
+|+.+++.+.++++++++++++|||+.+|+.+ .+.+|... ++. +...++++....|.
T Consensus 159 ~K~~al~~l~~~~g~~~~~~i~~GD~~nD~~m----l~~~~~~i-av~---na~~~~k~~a~~~~ 215 (236)
T TIGR02471 159 SKGLALRYLSYRWGLPLEQILVAGDSGNDEEM----LRGLTLGV-VVG---NHDPELEGLRHQQR 215 (236)
T ss_pred ChHHHHHHHHHHhCCCHHHEEEEcCCccHHHH----HcCCCcEE-EEc---CCcHHHHHhhcCCc
Confidence 89999999999999999999999999999999 88888644 443 34456666534444
No 166
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=96.74 E-value=0.0024 Score=52.38 Aligned_cols=28 Identities=25% Similarity=0.236 Sum_probs=21.6
Q ss_pred HcCCCeEEEEcCCCHHHHHHHHHHhcCCC
Q 024415 149 KFASSRIYIVTTKQSRFADALLRELAGVT 177 (268)
Q Consensus 149 ~~~g~~i~ivTn~~~~~~~~~l~~~~gl~ 177 (268)
+++|++++++|+++...+...++. +++.
T Consensus 31 ~~~g~~~~~~TGR~~~~~~~~~~~-l~~~ 58 (215)
T TIGR01487 31 EKKGIPVSLVTGNTVPFARALAVL-IGTS 58 (215)
T ss_pred HHCCCEEEEEcCCcchhHHHHHHH-hCCC
Confidence 567888888888888777777777 5664
No 167
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=96.72 E-value=0.0034 Score=54.95 Aligned_cols=69 Identities=19% Similarity=0.123 Sum_probs=40.6
Q ss_pred CCeEEEEcCCC---HHH-HHHHHHHhcCCCCCCCeEEecCCCChHHHHHHHHhcCCCCCCcEEEEecCccchhccccccc
Q 024415 152 SSRIYIVTTKQ---SRF-ADALLRELAGVTIPPDRIYGLGTGPKVEVLKQLQKKPELQGMTLHFVEDRLATLKNVIKEPE 227 (268)
Q Consensus 152 g~~i~ivTn~~---~~~-~~~~l~~~~gl~~~f~~i~~~~~~pk~~~~~~~~~~~~~~~~~~l~IGDs~~Di~~~~~~A~ 227 (268)
|+++.++||+. ... ++.+.+. +|+....+.|+++.. ++..+...++ ..+++||-+. -... ++
T Consensus 36 g~~~~flTNn~g~s~~~~~~~l~~~-lG~~~~~~~i~~s~~-----~~~~ll~~~~---~~v~viG~~~-~~~~----l~ 101 (321)
T TIGR01456 36 KIPYIFLTNGGGFSERARAEEISSL-LGVDVSPLQVIQSHS-----PYKSLVNKYE---KRILAVGTGS-VRGV----AE 101 (321)
T ss_pred CCCEEEEecCCCCCHHHHHHHHHHH-cCCCCCHHHHHhhhH-----HHHHHHHHcC---CceEEEeChH-HHHH----HH
Confidence 89999999986 444 3334477 688654445544431 3344444432 2568888653 2344 66
Q ss_pred ccCCeEE
Q 024415 228 LDGWNLY 234 (268)
Q Consensus 228 ~aG~~~v 234 (268)
..|+..+
T Consensus 102 ~~G~~~v 108 (321)
T TIGR01456 102 GYGFQNV 108 (321)
T ss_pred HcCCccc
Confidence 7887654
No 168
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=96.65 E-value=0.011 Score=57.09 Aligned_cols=74 Identities=20% Similarity=0.257 Sum_probs=60.7
Q ss_pred CCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecCCC-ChHHHHHHHHhcCCCCCCcEEEEec
Q 024415 139 RFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGTG-PKVEVLKQLQKKPELQGMTLHFVED 214 (268)
Q Consensus 139 ~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~~~-pk~~~~~~~~~~~~~~~~~~l~IGD 214 (268)
.+.|++..++ |+.|++++++|+.....++...+. .| ++.|++.-.. .|.+.++.+.+.-+.. .||||
T Consensus 723 ~vr~~a~~av~~Lk~~Gi~v~mLTGDn~~aA~svA~~-VG----i~~V~aev~P~~K~~~Ik~lq~~~~~V----aMVGD 793 (951)
T KOG0207|consen 723 QVRPDAALAVAELKSMGIKVVMLTGDNDAAARSVAQQ-VG----IDNVYAEVLPEQKAEKIKEIQKNGGPV----AMVGD 793 (951)
T ss_pred ccchhHHHHHHHHHhcCceEEEEcCCCHHHHHHHHHh-hC----cceEEeccCchhhHHHHHHHHhcCCcE----EEEeC
Confidence 5778888777 899999999999999999999999 68 5566655432 5788999998876444 99999
Q ss_pred Cccchhc
Q 024415 215 RLATLKN 221 (268)
Q Consensus 215 s~~Di~~ 221 (268)
+.+|--+
T Consensus 794 GINDaPA 800 (951)
T KOG0207|consen 794 GINDAPA 800 (951)
T ss_pred CCCccHH
Confidence 9999877
No 169
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=96.48 E-value=0.0067 Score=50.30 Aligned_cols=29 Identities=24% Similarity=0.131 Sum_probs=23.9
Q ss_pred HcCCCeEEEEcCCCHHHHHHHHHHhcCCCC
Q 024415 149 KFASSRIYIVTTKQSRFADALLRELAGVTI 178 (268)
Q Consensus 149 ~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~ 178 (268)
+++|++++++|+++...+...++. +|+..
T Consensus 28 ~~~G~~~vi~TgR~~~~~~~~~~~-lg~~~ 56 (225)
T TIGR02461 28 KDLGFPIVFVSSKTRAEQEYYREE-LGVEP 56 (225)
T ss_pred HHCCCEEEEEeCCCHHHHHHHHHH-cCCCC
Confidence 577899999999988888888888 68754
No 170
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=96.43 E-value=0.012 Score=59.61 Aligned_cols=115 Identities=15% Similarity=0.163 Sum_probs=75.7
Q ss_pred CCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCC----------------------------------
Q 024415 139 RFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPD---------------------------------- 181 (268)
Q Consensus 139 ~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~---------------------------------- 181 (268)
++.||+.+++ ++.|+++.++|+.....+...... .|+-..-.
T Consensus 631 ~lq~~v~etI~~L~~AGIkv~mlTGD~~~TA~~IA~~-~~ii~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 709 (1057)
T TIGR01652 631 KLQEGVPETIELLRQAGIKIWVLTGDKVETAINIGYS-CRLLSRNMEQIVITSESLDATRSVEAAIKFGLEGTSEEFNNL 709 (1057)
T ss_pred hhhhccHHHHHHHHHCCCeEEEEcCCcHHHHHHHHHH-hCCCCCCCeEEEEecCchhhhHHHHHHHHHHHHHHHHhhhhh
Confidence 7899999999 799999999999988888888777 67632211
Q ss_pred -------eEEecCC----------------------------C--ChHHHHHHHHhcCCCCCCcEEEEecCccchhcccc
Q 024415 182 -------RIYGLGT----------------------------G--PKVEVLKQLQKKPELQGMTLHFVEDRLATLKNVIK 224 (268)
Q Consensus 182 -------~i~~~~~----------------------------~--pk~~~~~~~~~~~~~~~~~~l~IGDs~~Di~~~~~ 224 (268)
.+++++. . .|.++++.+.... ...+++|||+.+|+.|
T Consensus 710 ~~~~~~~lvi~G~~l~~~l~~~~~~~f~~l~~~~~~vV~aR~sP~qK~~IV~~lk~~~---~~~vl~iGDG~ND~~m--- 783 (1057)
T TIGR01652 710 GDSGNVALVIDGKSLGYALDEELEKEFLQLALKCKAVICCRVSPSQKADVVRLVKKST---GKTTLAIGDGANDVSM--- 783 (1057)
T ss_pred ccCCceEEEEccHHHHHHHhhHHHHHHHHHHhhCCEEEEeCCCHHHHHHHHHHHHhcC---CCeEEEEeCCCccHHH---
Confidence 1222210 0 2344555554432 3457999999999999
Q ss_pred cccccCCeEEEeecCCCCHHHHHhhcCCCCEEEcCHhHHHhhc
Q 024415 225 EPELDGWNLYLGDWGYNTQKEREEAASIPRIQLLQLSDFSRKL 267 (268)
Q Consensus 225 ~A~~aG~~~v~v~~g~~~~~~~~~~~~~p~~~~~~~~~l~~~l 267 (268)
-+.|.+.. ++. |. +-.++...+|+.+.+++.|.++|
T Consensus 784 -lk~AdVGI-gi~-g~----eg~qA~~aaD~~i~~F~~L~~ll 819 (1057)
T TIGR01652 784 -IQEADVGV-GIS-GK----EGMQAVMASDFAIGQFRFLTKLL 819 (1057)
T ss_pred -HhhcCeee-Eec-Ch----HHHHHHHhhhhhhhhHHHHHHHH
Confidence 78777633 332 21 11122234789999988888765
No 171
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=96.42 E-value=0.0049 Score=52.37 Aligned_cols=59 Identities=14% Similarity=0.033 Sum_probs=47.2
Q ss_pred ChHHHHHHHHhcCCCCCCcEEEEecCccchhcccccccccCCeEEEeecCCCCHHHHHhhcCCCCEEEcC
Q 024415 190 PKVEVLKQLQKKPELQGMTLHFVEDRLATLKNVIKEPELDGWNLYLGDWGYNTQKEREEAASIPRIQLLQ 259 (268)
Q Consensus 190 pk~~~~~~~~~~~~~~~~~~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~~~~p~~~~~~ 259 (268)
.|..+++.+++.+++++++++.|||+.+|+.+ -+.+|. .|++. |..++++.. .+++..+
T Consensus 196 sKg~al~~l~~~~gi~~~~v~afGD~~NDi~M----l~~ag~-~vAm~---NA~~~vK~~---A~~vt~~ 254 (270)
T PRK10513 196 NKGTGVKSLAEHLGIKPEEVMAIGDQENDIAM----IEYAGV-GVAMG---NAIPSVKEV---AQFVTKS 254 (270)
T ss_pred ChHHHHHHHHHHhCCCHHHEEEECCchhhHHH----HHhCCc-eEEec---CccHHHHHh---cCeeccC
Confidence 88999999999999999999999999999999 899997 44444 344566653 3455544
No 172
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=96.36 E-value=0.025 Score=47.26 Aligned_cols=78 Identities=22% Similarity=0.248 Sum_probs=53.5
Q ss_pred cCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecCCCChHHHHHHHHhcCCCCCCcEEEEecCccchhccccccccc
Q 024415 150 FASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGTGPKVEVLKQLQKKPELQGMTLHFVEDRLATLKNVIKEPELD 229 (268)
Q Consensus 150 ~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~~~pk~~~~~~~~~~~~~~~~~~l~IGDs~~Di~~~~~~A~~a 229 (268)
..-++++|||..+....+.+++.+-.+.-..|..+.-..-||..+++.+.-. ||++|....++. |. .
T Consensus 184 ~~piRtalVTAR~apah~RvI~TLr~Wgv~vDEafFLgG~~K~~vL~~~~ph--------IFFDDQ~~H~~~----a~-~ 250 (264)
T PF06189_consen 184 NSPIRTALVTARSAPAHERVIRTLRSWGVRVDEAFFLGGLPKGPVLKAFRPH--------IFFDDQDGHLES----AS-K 250 (264)
T ss_pred CCceEEEEEEcCCCchhHHHHHHHHHcCCcHhHHHHhCCCchhHHHHhhCCC--------EeecCchhhhhH----hh-c
Confidence 4458999999776655555555422222235544433334888888877655 999999999999 77 7
Q ss_pred CCeEEEeecCC
Q 024415 230 GWNLYLGDWGY 240 (268)
Q Consensus 230 G~~~v~v~~g~ 240 (268)
+++++.|-+|.
T Consensus 251 ~vps~hVP~gv 261 (264)
T PF06189_consen 251 VVPSGHVPYGV 261 (264)
T ss_pred CCCEEeccCCc
Confidence 78888887764
No 173
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=96.33 E-value=0.11 Score=42.63 Aligned_cols=39 Identities=13% Similarity=0.276 Sum_probs=31.4
Q ss_pred cCCCCCChHHHHH--cCCCeEEEEcCCCHHHHHHHHHHhcCC
Q 024415 137 ANRFYPGIPDALK--FASSRIYIVTTKQSRFADALLRELAGV 176 (268)
Q Consensus 137 ~~~~~pg~~e~L~--~~g~~i~ivTn~~~~~~~~~l~~~~gl 176 (268)
..++.||+.++++ +.-+.=+|+|.+.++++....+. .|+
T Consensus 81 sa~lvPgA~etm~~l~~~~tp~v~STSY~qy~~r~a~~-ig~ 121 (315)
T COG4030 81 SAKLVPGAEETMATLQERWTPVVISTSYTQYLRRTASM-IGV 121 (315)
T ss_pred hcccCCChHHHHHHHhccCCceEEeccHHHHHHHHHHh-cCC
Confidence 3578899999995 44467788999999898888887 677
No 174
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=96.31 E-value=0.01 Score=49.61 Aligned_cols=39 Identities=23% Similarity=0.349 Sum_probs=24.3
Q ss_pred HcCCCeEEEEcCCC---HHHHHHHHHHhcCCCCCCCeEEecC
Q 024415 149 KFASSRIYIVTTKQ---SRFADALLRELAGVTIPPDRIYGLG 187 (268)
Q Consensus 149 ~~~g~~i~ivTn~~---~~~~~~~l~~~~gl~~~f~~i~~~~ 187 (268)
+++|+++.++||+. .......|..++|+....+.++++.
T Consensus 27 ~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~~~~~~~iits~ 68 (236)
T TIGR01460 27 RAKGKPVVFLTNNSSRSEEDYAEKLSSLLGVDVSPDQIITSG 68 (236)
T ss_pred HHCCCeEEEEECCCCCCHHHHHHHHHHhcCCCCCHHHeeeHH
Confidence 57889999999765 3333334444247766666676653
No 175
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=96.25 E-value=0.018 Score=48.63 Aligned_cols=40 Identities=18% Similarity=0.038 Sum_probs=36.4
Q ss_pred HHcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecCC
Q 024415 148 LKFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGT 188 (268)
Q Consensus 148 L~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~~ 188 (268)
|++.|-.+++=|.+.++.+...++. ++|..+||.|++...
T Consensus 154 Lk~~g~vLvLWSyG~~eHV~~sl~~-~~L~~~Fd~ii~~G~ 193 (297)
T PF05152_consen 154 LKEQGCVLVLWSYGNREHVRHSLKE-LKLEGYFDIIICGGN 193 (297)
T ss_pred HHHcCCEEEEecCCCHHHHHHHHHH-hCCccccEEEEeCCc
Confidence 4788999999999999999999999 899999999998763
No 176
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=96.13 E-value=0.0034 Score=50.94 Aligned_cols=40 Identities=18% Similarity=0.051 Sum_probs=37.5
Q ss_pred ChHHHHHHHHhcCCCCCCcEEEEecCccchhcccccccccCCeE
Q 024415 190 PKVEVLKQLQKKPELQGMTLHFVEDRLATLKNVIKEPELDGWNL 233 (268)
Q Consensus 190 pk~~~~~~~~~~~~~~~~~~l~IGDs~~Di~~~~~~A~~aG~~~ 233 (268)
+|+.+++.++++++.+++++++|||+.+|+.+ ++.+|+..
T Consensus 163 ~K~~~~~~~~~~~~~~~~~~~~~GD~~nD~~~----~~~~~~~v 202 (204)
T TIGR01484 163 DKGSALQALLKELNGKRDEILAFGDSGNDEEM----FEVAGLAV 202 (204)
T ss_pred ChHHHHHHHHHHhCCCHHHEEEEcCCHHHHHH----HHHcCCce
Confidence 89999999999999999999999999999999 99999754
No 177
>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=96.10 E-value=0.0053 Score=53.03 Aligned_cols=93 Identities=20% Similarity=0.260 Sum_probs=67.6
Q ss_pred CChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCC--CCCCCeEEecCCCCh-------------------------
Q 024415 142 PGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGV--TIPPDRIYGLGTGPK------------------------- 191 (268)
Q Consensus 142 pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl--~~~f~~i~~~~~~pk------------------------- 191 (268)
|....+| +.+|.++.++||++-.++..-++.+.|- .+.||.|+.-..+|+
T Consensus 243 ~ql~~fl~kL~~~GKklFLiTNSPysFVd~GM~flvG~~WRdlFDVVIvqA~KP~Fftde~rPfR~~dek~~sl~wdkv~ 322 (510)
T KOG2470|consen 243 PQLLAFLRKLKDHGKKLFLITNSPYSFVDKGMRFLVGDDWRDLFDVVIVQANKPEFFTDERRPFRKYDEKRGSLLWDKVD 322 (510)
T ss_pred HHHHHHHHHHHHhcCcEEEEeCCchhhhhcCceeeeCccHHhhhheeEEecCCCcccccccCcchhhcccccchhhhhhh
Confidence 3444555 6999999999999999999988864443 477998876554433
Q ss_pred ---------HHHHHHHHhcCCCCCCcEEEEecCc-cchhcccccccccCCeEEEee
Q 024415 192 ---------VEVLKQLQKKPELQGMTLHFVEDRL-ATLKNVIKEPELDGWNLYLGD 237 (268)
Q Consensus 192 ---------~~~~~~~~~~~~~~~~~~l~IGDs~-~Di~~~~~~A~~aG~~~v~v~ 237 (268)
...+..+.+--+.-..+++|+||+. +|+..+ ..+.||.+-++-
T Consensus 323 klekgkiYy~G~l~~flelt~WrG~~VlYFGDHlySDLad~---tlkhgWRTgAII 375 (510)
T KOG2470|consen 323 KLEKGKIYYQGNLKSFLELTGWRGPRVLYFGDHLYSDLADL---TLKHGWRTGAII 375 (510)
T ss_pred hcccCceeeeccHHHHHHHhccCCCeeEEecCcchhhhhhh---Hhhcccccccch
Confidence 1133556666677788999999995 798883 448898776654
No 178
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=96.10 E-value=0.0074 Score=49.67 Aligned_cols=28 Identities=21% Similarity=0.265 Sum_probs=25.4
Q ss_pred HcCCCeEEEEcCCCHHHHHHHHHHhcCCC
Q 024415 149 KFASSRIYIVTTKQSRFADALLRELAGVT 177 (268)
Q Consensus 149 ~~~g~~i~ivTn~~~~~~~~~l~~~~gl~ 177 (268)
+++|++++++||++...+...++. +++.
T Consensus 29 ~~~gi~~~i~TgR~~~~~~~~~~~-l~~~ 56 (221)
T TIGR02463 29 QEAGIPVILCTSKTAAEVEYLQKA-LGLT 56 (221)
T ss_pred HHCCCeEEEEcCCCHHHHHHHHHH-cCCC
Confidence 678999999999999999999999 7875
No 179
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=96.08 E-value=0.0074 Score=50.87 Aligned_cols=59 Identities=14% Similarity=0.119 Sum_probs=46.5
Q ss_pred ChHHHHHHHHhcCCCCCCcEEEEecCccchhcccccccccCCeEEEeecCCCCHHHHHhhcCCCCEEEcC
Q 024415 190 PKVEVLKQLQKKPELQGMTLHFVEDRLATLKNVIKEPELDGWNLYLGDWGYNTQKEREEAASIPRIQLLQ 259 (268)
Q Consensus 190 pk~~~~~~~~~~~~~~~~~~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~~~~p~~~~~~ 259 (268)
.|..+++.+++.+++.++++++|||+.+|+.+ .+.+|+.++ +. +..+..+. ..+++..+
T Consensus 188 ~K~~~i~~~~~~~~~~~~~~~~~GD~~nD~~m----~~~~~~~~a-~~---na~~~~k~---~a~~~~~~ 246 (256)
T TIGR00099 188 SKGSALQSLAEALGISLEDVIAFGDGMNDIEM----LEAAGYGVA-MG---NADEELKA---LADYVTDS 246 (256)
T ss_pred ChHHHHHHHHHHcCCCHHHEEEeCCcHHhHHH----HHhCCceeE-ec---CchHHHHH---hCCEEecC
Confidence 78999999999999999999999999999999 999998544 32 33445554 24466554
No 180
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=96.06 E-value=0.02 Score=57.14 Aligned_cols=87 Identities=14% Similarity=0.213 Sum_probs=66.9
Q ss_pred CCCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCC--eEEecCC---C--------------------
Q 024415 138 NRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPD--RIYGLGT---G-------------------- 189 (268)
Q Consensus 138 ~~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~--~i~~~~~---~-------------------- 189 (268)
.|+.|++++++ +++|+++.++|+.....+..+.+. .|+...-+ .++++.. .
T Consensus 546 Dppr~~v~~aI~~l~~AGI~v~MiTGD~~~TA~aIa~~-~Gi~~~~~~~~vi~G~el~~l~~~el~~~~~~~~VfARvsP 624 (917)
T COG0474 546 DPPREDVKEAIEELREAGIKVWMITGDHVETAIAIAKE-CGIEAEAESALVIDGAELDALSDEELAELVEELSVFARVSP 624 (917)
T ss_pred CCCCccHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHH-cCCCCCCCceeEeehHHhhhcCHHHHHHHhhhCcEEEEcCH
Confidence 38999999999 799999999999999999999999 89875543 2444431 0
Q ss_pred -ChHHHHHHHHhcCCCCCCcEEEEecCccchhcccccccccCCeE
Q 024415 190 -PKVEVLKQLQKKPELQGMTLHFVEDRLATLKNVIKEPELDGWNL 233 (268)
Q Consensus 190 -pk~~~~~~~~~~~~~~~~~~l~IGDs~~Di~~~~~~A~~aG~~~ 233 (268)
.|..+++.+.+.-. -+.|+||+.+|..| -+.|.+-.
T Consensus 625 ~qK~~IV~~lq~~g~----vVamtGDGvNDapA----Lk~ADVGI 661 (917)
T COG0474 625 EQKARIVEALQKSGH----VVAMTGDGVNDAPA----LKAADVGI 661 (917)
T ss_pred HHHHHHHHHHHhCCC----EEEEeCCCchhHHH----HHhcCccE
Confidence 23556666666633 35999999999999 88888743
No 181
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=96.03 E-value=0.012 Score=48.49 Aligned_cols=27 Identities=26% Similarity=0.338 Sum_probs=19.7
Q ss_pred HcCCCeEEEEcCCCHHHHHHHHHHhcCC
Q 024415 149 KFASSRIYIVTTKQSRFADALLRELAGV 176 (268)
Q Consensus 149 ~~~g~~i~ivTn~~~~~~~~~l~~~~gl 176 (268)
+++|++++++|+++...+...++. +|+
T Consensus 28 ~~~Gi~~~~aTGR~~~~~~~~~~~-l~~ 54 (225)
T TIGR01482 28 ESVGIPVVLVTGNSVQFARALAKL-IGT 54 (225)
T ss_pred HHCCCEEEEEcCCchHHHHHHHHH-hCC
Confidence 467788888888777777777776 564
No 182
>PRK10976 putative hydrolase; Provisional
Probab=95.98 E-value=0.0099 Score=50.37 Aligned_cols=17 Identities=35% Similarity=0.436 Sum_probs=15.7
Q ss_pred CCceeEeecCccccCch
Q 024415 1 MADLYALDFDGVLCDSC 17 (268)
Q Consensus 1 M~~~viFD~DGTL~d~~ 17 (268)
|+|+|+||+||||++..
T Consensus 1 mikli~~DlDGTLl~~~ 17 (266)
T PRK10976 1 MYQVVASDLDGTLLSPD 17 (266)
T ss_pred CceEEEEeCCCCCcCCC
Confidence 78999999999999876
No 183
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=95.97 E-value=0.053 Score=49.65 Aligned_cols=62 Identities=8% Similarity=0.024 Sum_probs=42.6
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCChHHHHHcCCCeEEEEcCCCHHHHHHHHHHhcCCC
Q 024415 106 EDWSENRDALVDLFGKVRDEWMDKDLTTWIGANRFYPGIPDALKFASSRIYIVTTKQSRFADALLRELAGVT 177 (268)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~e~L~~~g~~i~ivTn~~~~~~~~~l~~~~gl~ 177 (268)
...|+..++++.....+...++..+ +.|...+..++.| +++|+|..++-+++..++.++|++
T Consensus 72 ~f~Gl~~~die~vaRavlpkf~~~d---------v~~e~~~~~~~~g-~~vVVTAsPrvmVEpFake~LG~D 133 (498)
T PLN02499 72 ATAGVHESEIESVARAVLPKFYMDD---------VDMEAWKVFSSCD-KRVVVTRMPRVMVERFAKEHLRAD 133 (498)
T ss_pred HhCCCCHHHHHHHHHHHhhHHHHhh---------CCHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHhcCCc
Confidence 4456666666555556665555333 3444556667777 999999999999999999844553
No 184
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=95.97 E-value=0.014 Score=49.25 Aligned_cols=28 Identities=14% Similarity=0.311 Sum_probs=23.3
Q ss_pred HcCCCeEEEEcCCCHHHHHHHHHHhcCCC
Q 024415 149 KFASSRIYIVTTKQSRFADALLRELAGVT 177 (268)
Q Consensus 149 ~~~g~~i~ivTn~~~~~~~~~l~~~~gl~ 177 (268)
+++|++++++|+++...+...++. +++.
T Consensus 29 ~~~G~~~~iaTGR~~~~~~~~~~~-~~~~ 56 (256)
T TIGR00099 29 REKGIKVVLATGRPYKEVKNILKE-LGLD 56 (256)
T ss_pred HHCCCeEEEEeCCCHHHHHHHHHH-cCCC
Confidence 577899999999998888888888 6765
No 185
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=95.74 E-value=0.037 Score=47.13 Aligned_cols=66 Identities=6% Similarity=-0.152 Sum_probs=44.5
Q ss_pred hHHHHHHHHhcCCC---CCCcEEEEecCccchhcccccccccCCeEEEeecCCCCHHHHHhhcCCCCEEEcCHh
Q 024415 191 KVEVLKQLQKKPEL---QGMTLHFVEDRLATLKNVIKEPELDGWNLYLGDWGYNTQKEREEAASIPRIQLLQLS 261 (268)
Q Consensus 191 k~~~~~~~~~~~~~---~~~~~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~~~~p~~~~~~~~ 261 (268)
|..+++.+++.+++ ++++++.|||+.+|+.| -+.+|. .|++.........+......++++....+
T Consensus 188 Kg~al~~l~~~lgi~~~~~~~viafGDs~NDi~M----l~~ag~-gvAM~~~~~~~~~l~~~~~~~~~~~~~~~ 256 (271)
T PRK03669 188 KDQAANWLIATYQQLSGTRPTTLGLGDGPNDAPL----LDVMDY-AVVVKGLNREGVHLQDDDPARVYRTQREG 256 (271)
T ss_pred HHHHHHHHHHHHHhhcCCCceEEEEcCCHHHHHH----HHhCCE-EEEecCCCCCCcccccccCCceEeccCCC
Confidence 36788999999999 99999999999999999 889996 44444321121223222234556555443
No 186
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=95.73 E-value=0.019 Score=41.22 Aligned_cols=70 Identities=19% Similarity=0.273 Sum_probs=43.1
Q ss_pred CCCCChHHHH---HcCCCeEEEEcCCCH---HHHHHHHHHhcCCCCCCCeEEecCCCChHHHHHHHHhcCCCCCCcEEEE
Q 024415 139 RFYPGIPDAL---KFASSRIYIVTTKQS---RFADALLRELAGVTIPPDRIYGLGTGPKVEVLKQLQKKPELQGMTLHFV 212 (268)
Q Consensus 139 ~~~pg~~e~L---~~~g~~i~ivTn~~~---~~~~~~l~~~~gl~~~f~~i~~~~~~pk~~~~~~~~~~~~~~~~~~l~I 212 (268)
.++||+.++| +++|++++++||++. ......|+. .|+....+.|+++.. .+..++.+..+ ..++.+|
T Consensus 14 ~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~-~Gi~~~~~~i~ts~~----~~~~~l~~~~~--~~~v~vl 86 (101)
T PF13344_consen 14 EPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKK-LGIPVDEDEIITSGM----AAAEYLKEHKG--GKKVYVL 86 (101)
T ss_dssp EE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHH-TTTT--GGGEEEHHH----HHHHHHHHHTT--SSEEEEE
T ss_pred CcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHh-cCcCCCcCEEEChHH----HHHHHHHhcCC--CCEEEEE
Confidence 5789999999 699999999999863 344555677 688755566665432 33444444322 4456777
Q ss_pred ecC
Q 024415 213 EDR 215 (268)
Q Consensus 213 GDs 215 (268)
|-.
T Consensus 87 G~~ 89 (101)
T PF13344_consen 87 GSD 89 (101)
T ss_dssp S-H
T ss_pred cCH
Confidence 754
No 187
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.71 E-value=0.065 Score=48.54 Aligned_cols=69 Identities=25% Similarity=0.334 Sum_probs=54.2
Q ss_pred HHcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecCC--------CChHHHHHHHHhcCCCCCCcEEEEecCccch
Q 024415 148 LKFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGT--------GPKVEVLKQLQKKPELQGMTLHFVEDRLATL 219 (268)
Q Consensus 148 L~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~~--------~pk~~~~~~~~~~~~~~~~~~l~IGDs~~Di 219 (268)
|+++|.-++|+|-+....+..+..+ ..+-|..-+. .||.+-++.+.+++++-.+..+||+|++...
T Consensus 267 l~kqGVlLav~SKN~~~da~evF~k------hp~MiLkeedfa~~~iNW~~K~eNirkIAkklNlg~dSmvFiDD~p~Er 340 (574)
T COG3882 267 LKKQGVLLAVCSKNTEKDAKEVFRK------HPDMILKEEDFAVFQINWDPKAENIRKIAKKLNLGLDSMVFIDDNPAER 340 (574)
T ss_pred HHhccEEEEEecCCchhhHHHHHhh------CCCeEeeHhhhhhheecCCcchhhHHHHHHHhCCCccceEEecCCHHHH
Confidence 4799999999997777666666665 2333443332 2999999999999999999999999999877
Q ss_pred hcc
Q 024415 220 KNV 222 (268)
Q Consensus 220 ~~~ 222 (268)
+-+
T Consensus 341 E~v 343 (574)
T COG3882 341 ELV 343 (574)
T ss_pred HHH
Confidence 773
No 188
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=95.71 E-value=0.077 Score=51.16 Aligned_cols=98 Identities=18% Similarity=0.219 Sum_probs=72.7
Q ss_pred CCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCe----EEecCC-----------------------
Q 024415 139 RFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDR----IYGLGT----------------------- 188 (268)
Q Consensus 139 ~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~----i~~~~~----------------------- 188 (268)
||+|++.+.+ ++.|+++.++|+.....+..+-+. .|+...-+. .+++..
T Consensus 584 PPR~ev~~ai~~c~~aGIrV~mITGD~~~TA~AI~r~-iGi~~~~ed~~~~~~TG~efD~ls~~~~~~~~~~~~vFaR~~ 662 (972)
T KOG0202|consen 584 PPRPEVADAIELCRQAGIRVIMITGDNKETAEAIARE-IGIFSEDEDVSSMALTGSEFDDLSDEELDDAVRRVLVFARAE 662 (972)
T ss_pred CCchhHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHH-hCCCcCCccccccccchhhhhcCCHHHHHHHhhcceEEEecC
Confidence 8999999988 799999999999999999999999 797544332 222211
Q ss_pred -CChHHHHHHHHhcCCCCCCcEEEEecCccchhcccccccccCCeEEEeecCCCCHHHHHh
Q 024415 189 -GPKVEVLKQLQKKPELQGMTLHFVEDRLATLKNVIKEPELDGWNLYLGDWGYNTQKEREE 248 (268)
Q Consensus 189 -~pk~~~~~~~~~~~~~~~~~~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~ 248 (268)
..|.++++.+...-.+. .|-||+++|--+ -+.|.+ ++..|-+..+.-++
T Consensus 663 P~HK~kIVeaLq~~geiv----AMTGDGVNDApA----LK~AdI---GIAMG~~GTdVaKe 712 (972)
T KOG0202|consen 663 PQHKLKIVEALQSRGEVV----AMTGDGVNDAPA----LKKADI---GIAMGISGTDVAKE 712 (972)
T ss_pred chhHHHHHHHHHhcCCEE----EecCCCccchhh----hhhccc---ceeecCCccHhhHh
Confidence 02477888888887777 999999999999 788876 44455333334343
No 189
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=95.69 E-value=0.011 Score=50.42 Aligned_cols=46 Identities=9% Similarity=-0.118 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCCCC-CCCeEE-ecCCCChHHHHHHHHhcCCCCCCcEEEEecCccch
Q 024415 165 FADALLRELAGVTI-PPDRIY-GLGTGPKVEVLKQLQKKPELQGMTLHFVEDRLATL 219 (268)
Q Consensus 165 ~~~~~l~~~~gl~~-~f~~i~-~~~~~pk~~~~~~~~~~~~~~~~~~l~IGDs~~Di 219 (268)
.++.+++. +|+.. ..+.++ -+|...+.++++... .. +.+|+...+.
T Consensus 191 al~~l~~~-lgi~~~~~~~viafGDs~NDi~Ml~~ag----~g----vAM~~~~~~~ 238 (271)
T PRK03669 191 AANWLIAT-YQQLSGTRPTTLGLGDGPNDAPLLDVMD----YA----VVVKGLNREG 238 (271)
T ss_pred HHHHHHHH-HHhhcCCCceEEEEcCCHHHHHHHHhCC----EE----EEecCCCCCC
Confidence 35556666 67721 234444 455557888887755 34 7888765443
No 190
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=95.67 E-value=0.06 Score=44.51 Aligned_cols=60 Identities=17% Similarity=0.099 Sum_probs=44.9
Q ss_pred HHHHHHHHhcCCCCCCcEEEEecCccchhcccccccccCCeEEEeecCCCCHHHHHhhcCCCCEEEcCHhH
Q 024415 192 VEVLKQLQKKPELQGMTLHFVEDRLATLKNVIKEPELDGWNLYLGDWGYNTQKEREEAASIPRIQLLQLSD 262 (268)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~~~~p~~~~~~~~~ 262 (268)
..+++.+.+.+++++++++.|||+.+|+.+ -+.+|.. |++. +..+.++.. .+++..+-.+
T Consensus 188 ~~ai~~l~~~~~i~~~~~~~~GD~~ND~~M----l~~~~~~-~am~---na~~~~k~~---a~~i~~~~~~ 247 (254)
T PF08282_consen 188 GSAIKYLLEYLGISPEDIIAFGDSENDIEM----LELAGYS-VAMG---NATPELKKA---ADYITPSNND 247 (254)
T ss_dssp HHHHHHHHHHHTTSGGGEEEEESSGGGHHH----HHHSSEE-EEET---TS-HHHHHH---SSEEESSGTC
T ss_pred HHHHHHHhhhcccccceeEEeecccccHhH----HhhcCeE-EEEc---CCCHHHHHh---CCEEecCCCC
Confidence 668899999999999999999999999999 8999875 4443 344566553 3466555443
No 191
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=95.65 E-value=0.022 Score=47.14 Aligned_cols=13 Identities=38% Similarity=0.427 Sum_probs=11.6
Q ss_pred eEeecCccccCch
Q 024415 5 YALDFDGVLCDSC 17 (268)
Q Consensus 5 viFD~DGTL~d~~ 17 (268)
|+||+||||++..
T Consensus 1 i~~DlDGTLl~~~ 13 (254)
T PF08282_consen 1 IFSDLDGTLLNSD 13 (254)
T ss_dssp EEEECCTTTCSTT
T ss_pred cEEEECCceecCC
Confidence 7899999999866
No 192
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=95.60 E-value=0.029 Score=47.36 Aligned_cols=43 Identities=12% Similarity=-0.049 Sum_probs=35.9
Q ss_pred hHHHHHHHHhcCCCC--CCcEEEEecCccchhcccccccccCCeEEEeec
Q 024415 191 KVEVLKQLQKKPELQ--GMTLHFVEDRLATLKNVIKEPELDGWNLYLGDW 238 (268)
Q Consensus 191 k~~~~~~~~~~~~~~--~~~~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~ 238 (268)
|..+++++++.++++ ++++++|||+.+|+.+ .+.+|..++ +.+
T Consensus 177 Kg~ai~~l~~~~~i~~~~~~~~a~GD~~ND~~M----l~~ag~~va-m~N 221 (256)
T TIGR01486 177 KGKAANALKQFYNQPGGAIKVVGLGDSPNDLPL----LEVVDLAVV-VPG 221 (256)
T ss_pred HHHHHHHHHHHHhhcCCCceEEEEcCCHhhHHH----HHHCCEEEE-eCC
Confidence 467788888888888 9999999999999999 999997444 443
No 193
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=95.49 E-value=0.12 Score=40.06 Aligned_cols=88 Identities=15% Similarity=0.096 Sum_probs=49.2
Q ss_pred CCCChHHHH---HcCCCeEEEEcCCCHHHH---HHHHHHhc---CCCCCCCeEEec-C---------C-CChHH-----H
Q 024415 140 FYPGIPDAL---KFASSRIYIVTTKQSRFA---DALLRELA---GVTIPPDRIYGL-G---------T-GPKVE-----V 194 (268)
Q Consensus 140 ~~pg~~e~L---~~~g~~i~ivTn~~~~~~---~~~l~~~~---gl~~~f~~i~~~-~---------~-~pk~~-----~ 194 (268)
.+||+.++. +++||++.-+|+.+-... +..|.. . |..-+.--++.+ + . .++|+ .
T Consensus 28 ~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L~~-~~q~~~~lP~Gpv~~sP~~l~~al~rEvi~~~p~~fK~~~ 106 (157)
T PF08235_consen 28 THPGAAELYRKIADNGYKILYLTARPIGQANRTRSWLAQ-HQQQGHNLPDGPVLLSPDSLFSALHREVISKDPEEFKIAC 106 (157)
T ss_pred hhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHHHH-HHhCCccCCCCCEEECCcchhhhhhccccccChHHHHHHH
Confidence 446777777 699999999999875443 334444 2 222122223333 1 1 13444 3
Q ss_pred HHHHHhcCC-CCCCcEEEEecCccchhcccccccccCCe
Q 024415 195 LKQLQKKPE-LQGMTLHFVEDRLATLKNVIKEPELDGWN 232 (268)
Q Consensus 195 ~~~~~~~~~-~~~~~~l~IGDs~~Di~~~~~~A~~aG~~ 232 (268)
++.+...+. ....=..-.|++.+|+.+ =+++|+.
T Consensus 107 L~~l~~~f~~~~~pf~agfGN~~tDv~a----Y~~vGip 141 (157)
T PF08235_consen 107 LRDLRALFPPDGNPFYAGFGNRSTDVIA----YKAVGIP 141 (157)
T ss_pred HHHHHHhcCCCCCeEEEecCCcHHHHHH----HHHcCCC
Confidence 444444322 111111346788999999 8899983
No 194
>PLN03190 aminophospholipid translocase; Provisional
Probab=95.48 E-value=0.053 Score=55.43 Aligned_cols=63 Identities=10% Similarity=0.048 Sum_probs=41.1
Q ss_pred HHHHHHHHhcCCCCCCcEEEEecCccchhcccccccccCCeEEEeecCCCCHHHHHhhcCCCCEEEcCHhHHHhhc
Q 024415 192 VEVLKQLQKKPELQGMTLHFVEDRLATLKNVIKEPELDGWNLYLGDWGYNTQKEREEAASIPRIQLLQLSDFSRKL 267 (268)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~~~~p~~~~~~~~~l~~~l 267 (268)
.++++.+.+.. ..-+++|||+.+|+.| -+.|.+-. ++. |. +-.++.-..|+.+..+..|.+||
T Consensus 860 a~IV~~vk~~~---~~vtlaIGDGaNDv~m----Iq~AdVGI-GIs-G~----EG~qA~~aSDfaI~~Fr~L~rLL 922 (1178)
T PLN03190 860 AGIVALVKNRT---SDMTLAIGDGANDVSM----IQMADVGV-GIS-GQ----EGRQAVMASDFAMGQFRFLVPLL 922 (1178)
T ss_pred HHHHHHHHhcC---CcEEEEECCCcchHHH----HHhcCeee-eec-Cc----hhHHHHHhhccchhhhHHHHHHH
Confidence 44444444432 2346999999999999 78776532 432 32 22233335889999999999886
No 195
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=95.43 E-value=0.03 Score=47.66 Aligned_cols=64 Identities=20% Similarity=0.115 Sum_probs=50.1
Q ss_pred ChHHHHHHHHhcCCCCCCcEEEEecCccchhccccccccc---CCeEEEeecCCCCHHHHHhhcCCCCEEEcCHhHHHhh
Q 024415 190 PKVEVLKQLQKKPELQGMTLHFVEDRLATLKNVIKEPELD---GWNLYLGDWGYNTQKEREEAASIPRIQLLQLSDFSRK 266 (268)
Q Consensus 190 pk~~~~~~~~~~~~~~~~~~l~IGDs~~Di~~~~~~A~~a---G~~~v~v~~g~~~~~~~~~~~~~p~~~~~~~~~l~~~ 266 (268)
.|..+++++.+.+++..+++++|||+.+|+.+ -+.+ |...|.|..+. ....+.+.++.++..+
T Consensus 174 ~Kg~al~~ll~~~~~~~~~v~~~GD~~nD~~m----f~~~~~~~g~~vavg~a~----------~~A~~~l~~~~~v~~~ 239 (266)
T PRK10187 174 NKGEAIAAFMQEAPFAGRTPVFVGDDLTDEAG----FAVVNRLGGISVKVGTGA----------TQASWRLAGVPDVWSW 239 (266)
T ss_pred CHHHHHHHHHHhcCCCCCeEEEEcCCccHHHH----HHHHHhcCCeEEEECCCC----------CcCeEeCCCHHHHHHH
Confidence 78999999999999999999999999999999 5655 34556664331 2345888899888776
Q ss_pred c
Q 024415 267 L 267 (268)
Q Consensus 267 l 267 (268)
|
T Consensus 240 L 240 (266)
T PRK10187 240 L 240 (266)
T ss_pred H
Confidence 6
No 196
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=95.21 E-value=0.07 Score=54.20 Aligned_cols=38 Identities=26% Similarity=0.343 Sum_probs=35.1
Q ss_pred CCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCC
Q 024415 139 RFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVT 177 (268)
Q Consensus 139 ~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~ 177 (268)
++.|++.+++ ++.|+++.++|+.+...+..+.+. .|+-
T Consensus 656 ~lr~~~~~~I~~l~~agi~v~miTGD~~~TA~~iA~~-~gii 696 (1054)
T TIGR01657 656 PLKPDTKEVIKELKRASIRTVMITGDNPLTAVHVARE-CGIV 696 (1054)
T ss_pred CCCccHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHH-cCCC
Confidence 7999999999 799999999999999999999999 7984
No 197
>PLN02382 probable sucrose-phosphatase
Probab=95.15 E-value=0.04 Score=49.98 Aligned_cols=52 Identities=15% Similarity=-0.073 Sum_probs=43.3
Q ss_pred ChHHHHHHHHhcC---CCCCCcEEEEecCccchhcccccccccCCeEEEeecCCCCHHHHHh
Q 024415 190 PKVEVLKQLQKKP---ELQGMTLHFVEDRLATLKNVIKEPELDGWNLYLGDWGYNTQKEREE 248 (268)
Q Consensus 190 pk~~~~~~~~~~~---~~~~~~~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~ 248 (268)
.|..+++++++.+ ++++++++.+||+.+|+.+ -+.+|...|++.+ ..+++++
T Consensus 175 sKg~Al~~L~~~~~~~gi~~~~~iafGDs~NDleM----l~~ag~~gvam~N---A~~elk~ 229 (413)
T PLN02382 175 GKGQALAYLLKKLKAEGKAPVNTLVCGDSGNDAEL----FSVPDVYGVMVSN---AQEELLQ 229 (413)
T ss_pred CHHHHHHHHHHHhhhcCCChhcEEEEeCCHHHHHH----HhcCCCCEEEEcC---CcHHHHH
Confidence 7899999999998 9999999999999999999 8888865666653 3345554
No 198
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=95.14 E-value=0.33 Score=40.58 Aligned_cols=145 Identities=14% Similarity=0.127 Sum_probs=78.5
Q ss_pred HHhhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCChHHHH---HcCCCeEEEEcCCCHHHHHHH
Q 024415 93 ILENWSKIKPVIMEDWSENRDALVDLFGKVRDEWMDKDLTTWIGANRFYPGIPDAL---KFASSRIYIVTTKQSRFADAL 169 (268)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~ 169 (268)
...+|++..-.++...++..+.+.+.+. .....+++|+.+++ +++++|+.|+|.+-...++.+
T Consensus 58 ~M~EWw~kah~llv~~~l~k~~i~~~V~--------------~s~i~LRdg~~~~f~~L~~~~IP~lIFSAGlgdvI~~v 123 (246)
T PF05822_consen 58 HMEEWWTKAHELLVEQGLTKSEIEEAVK--------------ESDIMLRDGVEEFFDKLEEHNIPLLIFSAGLGDVIEEV 123 (246)
T ss_dssp HHHHHHHHHHHHHHHHT-BGGGHHHHHH--------------CS---B-BTHHHHHHHHHCTT--EEEEEEEEHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcCHHHHHHHHH--------------hcchhhhcCHHHHHHHHHhcCCCEEEEeCCcHHHHHHH
Confidence 3456766666777777777666433221 23457899999998 699999999999999999999
Q ss_pred HHHhcCCCCCCCeEEecC-----C-------CC------hH-HHHH--HHHhcCCCCCCcEEEEecCccchhcccccccc
Q 024415 170 LRELAGVTIPPDRIYGLG-----T-------GP------KV-EVLK--QLQKKPELQGMTLHFVEDRLATLKNVIKEPEL 228 (268)
Q Consensus 170 l~~~~gl~~~f~~i~~~~-----~-------~p------k~-~~~~--~~~~~~~~~~~~~l~IGDs~~Di~~~~~~A~~ 228 (268)
|++ .|....--.|++.- . +| |- ..+. ...+. --...+++..|||..|+.+ |..
T Consensus 124 L~q-~~~~~~Nv~VvSN~M~Fd~~g~l~gF~~~lIH~~NKn~~~l~~~~~~~~-~~~R~NvlLlGDslgD~~M----a~G 197 (246)
T PF05822_consen 124 LRQ-AGVFHPNVKVVSNFMDFDEDGVLVGFKGPLIHTFNKNESALEDSPYFKQ-LKKRTNVLLLGDSLGDLHM----ADG 197 (246)
T ss_dssp HHH-TT--BTTEEEEEE-EEE-TTSBEEEE-SS---TT-HHHHHHTTHHHHHC-TTT--EEEEEESSSGGGGT----TTT
T ss_pred HHH-cCCCCCCeEEEeeeEEECCcceEeecCCCceEEeeCCcccccCchHHHH-hccCCcEEEecCccCChHh----hcC
Confidence 999 66532222234321 1 12 21 1221 11111 2356789999999999999 766
Q ss_pred c-CC---eEEEeecCCCCHHHHHhhcCCCCEEEc
Q 024415 229 D-GW---NLYLGDWGYNTQKEREEAASIPRIQLL 258 (268)
Q Consensus 229 a-G~---~~v~v~~g~~~~~~~~~~~~~p~~~~~ 258 (268)
. .. -.|+.... +-.+.+...-..=|+++.
T Consensus 198 ~~~~~~~lkIGFLn~-~ve~~l~~Y~~~yDIVlv 230 (246)
T PF05822_consen 198 VPDEENVLKIGFLND-KVEENLEKYLEAYDIVLV 230 (246)
T ss_dssp -S--SEEEEEEEE-S-SHHHHHHHHHCCSSEEEE
T ss_pred CCccccEEEEEeccc-CHHHHHHHHHhcCCEEEE
Confidence 6 32 33444443 223334444344455544
No 199
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=95.00 E-value=0.076 Score=44.16 Aligned_cols=35 Identities=14% Similarity=0.121 Sum_probs=27.4
Q ss_pred HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEe
Q 024415 149 KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYG 185 (268)
Q Consensus 149 ~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~ 185 (268)
+++|++++++|+++...+...++. +++. ..+.+++
T Consensus 27 ~~~gi~~viaTGR~~~~v~~~~~~-l~l~-~~~~~I~ 61 (236)
T TIGR02471 27 SGDAVGFGIATGRSVESAKSRYAK-LNLP-SPDVLIA 61 (236)
T ss_pred cCCCceEEEEeCCCHHHHHHHHHh-CCCC-CCCEEEE
Confidence 577899999999999999999998 6775 3444443
No 200
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=94.89 E-value=0.41 Score=39.75 Aligned_cols=79 Identities=11% Similarity=0.054 Sum_probs=60.4
Q ss_pred EEEEcCC-CHHHHHHHHHHhcCCCCCC--CeEEecCCCChHHHHHHHHhcCCCCCCcEEEEecCccchhcccccccccCC
Q 024415 155 IYIVTTK-QSRFADALLRELAGVTIPP--DRIYGLGTGPKVEVLKQLQKKPELQGMTLHFVEDRLATLKNVIKEPELDGW 231 (268)
Q Consensus 155 i~ivTn~-~~~~~~~~l~~~~gl~~~f--~~i~~~~~~pk~~~~~~~~~~~~~~~~~~l~IGDs~~Di~~~~~~A~~aG~ 231 (268)
-++||+. --...-++|- +||...| +.|+++-.-.|...|+++..+++-+...-++|||+..--.+ |+..+|
T Consensus 178 NvLVTs~qLVPaLaKcLL--y~L~~~f~ieNIYSa~kvGK~~cFe~I~~Rfg~p~~~f~~IGDG~eEe~a----Ak~l~w 251 (274)
T TIGR01658 178 NVLVTSGQLIPSLAKCLL--FRLDTIFRIENVYSSIKVGKLQCFKWIKERFGHPKVRFCAIGDGWEECTA----AQAMNW 251 (274)
T ss_pred EEEEEcCccHHHHHHHHH--hccCCccccccccchhhcchHHHHHHHHHHhCCCCceEEEeCCChhHHHH----HHhcCC
Confidence 3555554 3444444444 5787666 45777655589999999999999977889999999999899 999999
Q ss_pred eEEEeecC
Q 024415 232 NLYLGDWG 239 (268)
Q Consensus 232 ~~v~v~~g 239 (268)
+++-+...
T Consensus 252 PFw~I~~h 259 (274)
T TIGR01658 252 PFVKIDLH 259 (274)
T ss_pred CeEEeecC
Confidence 99988754
No 201
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=94.87 E-value=0.022 Score=48.09 Aligned_cols=43 Identities=12% Similarity=-0.078 Sum_probs=26.5
Q ss_pred HHHHHHHhcCCCC-CCCeEEecCCCChHHHHHHHHhcCCCCCCcEEEEecCcc
Q 024415 166 ADALLRELAGVTI-PPDRIYGLGTGPKVEVLKQLQKKPELQGMTLHFVEDRLA 217 (268)
Q Consensus 166 ~~~~l~~~~gl~~-~f~~i~~~~~~pk~~~~~~~~~~~~~~~~~~l~IGDs~~ 217 (268)
++.+++. +|+.. .-+.+..+|...+.++++..... +.+|+...
T Consensus 181 i~~l~~~-~~i~~~~~~~~a~GD~~ND~~Ml~~ag~~--------vam~Na~~ 224 (256)
T TIGR01486 181 ANALKQF-YNQPGGAIKVVGLGDSPNDLPLLEVVDLA--------VVVPGPNG 224 (256)
T ss_pred HHHHHHH-HhhcCCCceEEEEcCCHhhHHHHHHCCEE--------EEeCCCCC
Confidence 4556666 67642 23445555666788888865543 77787653
No 202
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=94.78 E-value=0.078 Score=49.35 Aligned_cols=77 Identities=18% Similarity=0.224 Sum_probs=60.4
Q ss_pred CCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecCC-CChHHHHHHHHhcCCCCCCcEEEEec
Q 024415 139 RFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGT-GPKVEVLKQLQKKPELQGMTLHFVED 214 (268)
Q Consensus 139 ~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~~-~pk~~~~~~~~~~~~~~~~~~l~IGD 214 (268)
++.|++.+++ ++.|+++.++|+.....+....+. .|+ ++.-. .-|.+.++.+.... ..+.||||
T Consensus 347 ~lr~~~~~~i~~l~~~gi~~~~ltGD~~~~a~~ia~~-lgi-------~~~~~p~~K~~~v~~l~~~g----~~v~~vGD 414 (499)
T TIGR01494 347 PLRDDAKETISELREAGIRVIMLTGDNVLTAKAIAKE-LGI-------FARVTPEEKAALVEALQKKG----RVVAMTGD 414 (499)
T ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHH-cCc-------eeccCHHHHHHHHHHHHHCC----CEEEEECC
Confidence 7889999998 689999999999999999999998 786 22211 14567777775443 55799999
Q ss_pred CccchhcccccccccCC
Q 024415 215 RLATLKNVIKEPELDGW 231 (268)
Q Consensus 215 s~~Di~~~~~~A~~aG~ 231 (268)
+.+|..+ -+.+++
T Consensus 415 g~nD~~a----l~~Adv 427 (499)
T TIGR01494 415 GVNDAPA----LKKADV 427 (499)
T ss_pred ChhhHHH----HHhCCC
Confidence 9999999 676764
No 203
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=94.77 E-value=0.15 Score=39.11 Aligned_cols=51 Identities=16% Similarity=0.062 Sum_probs=41.1
Q ss_pred ChHHHHHHHHhcCC-CCCCcEEEEecCc-cchhcccccccccCCeEEEeecCCCCHH
Q 024415 190 PKVEVLKQLQKKPE-LQGMTLHFVEDRL-ATLKNVIKEPELDGWNLYLGDWGYNTQK 244 (268)
Q Consensus 190 pk~~~~~~~~~~~~-~~~~~~l~IGDs~-~Di~~~~~~A~~aG~~~v~v~~g~~~~~ 244 (268)
...|.++++...-. .++.+++||||.. .||.. |...|--.||...|....+
T Consensus 122 ct~E~~~y~~~Nshv~~~se~~~vGDRlfTDI~~----aN~mGs~gVw~~~gv~~~~ 174 (190)
T KOG2961|consen 122 CTAEEVEYHFGNSHVCTSSELIMVGDRLFTDIVY----ANRMGSLGVWTEPGVRAEE 174 (190)
T ss_pred ccHHHHHHHhCCcccCChhHeEEEccchhhhHhh----hhhccceeEEecccccccc
Confidence 34778888776544 4689999999996 79999 9999999999998865443
No 204
>PTZ00174 phosphomannomutase; Provisional
Probab=94.43 E-value=0.028 Score=47.20 Aligned_cols=40 Identities=15% Similarity=-0.041 Sum_probs=34.1
Q ss_pred ChHHHHHHHHhcCCCCCCcEEEEec----CccchhcccccccccCCeEEEee
Q 024415 190 PKVEVLKQLQKKPELQGMTLHFVED----RLATLKNVIKEPELDGWNLYLGD 237 (268)
Q Consensus 190 pk~~~~~~~~~~~~~~~~~~l~IGD----s~~Di~~~~~~A~~aG~~~v~v~ 237 (268)
.|..+++.+.+. +++++.||| +.+|+.+ -+.++...+.|.
T Consensus 188 sKg~al~~L~~~----~~eviafGD~~~~~~NDieM----l~~~~~~g~~v~ 231 (247)
T PTZ00174 188 DKTYCLRHLEND----FKEIHFFGDKTFEGGNDYEI----YNDPRTIGHSVK 231 (247)
T ss_pred cHHHHHHHHHhh----hhhEEEEcccCCCCCCcHhh----hhcCCCceEEeC
Confidence 789999999988 589999999 8999999 777777666665
No 205
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=94.41 E-value=0.15 Score=43.60 Aligned_cols=70 Identities=14% Similarity=0.206 Sum_probs=44.6
Q ss_pred CCCChHHHH---HcCCCeEEEEcCCC---HHHHHHHHHHhcCCCCCCCeEEecCCCChHHHHHHHHhcCCCCCCcEEEEe
Q 024415 140 FYPGIPDAL---KFASSRIYIVTTKQ---SRFADALLRELAGVTIPPDRIYGLGTGPKVEVLKQLQKKPELQGMTLHFVE 213 (268)
Q Consensus 140 ~~pg~~e~L---~~~g~~i~ivTn~~---~~~~~~~l~~~~gl~~~f~~i~~~~~~pk~~~~~~~~~~~~~~~~~~l~IG 213 (268)
++||+.++| +++|++++++||++ +......++. +|+....+.|+++. .+...++.+......++++||
T Consensus 19 ~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~-~G~~~~~~~i~ts~-----~~~~~~l~~~~~~~~~v~~iG 92 (279)
T TIGR01452 19 VVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFAR-LGFNGLAEQLFSSA-----LCAARLLRQPPDAPKAVYVIG 92 (279)
T ss_pred eCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHH-cCCCCChhhEecHH-----HHHHHHHHhhCcCCCEEEEEc
Confidence 678888888 68999999999965 3344456777 68865555555432 233333333222345678888
Q ss_pred cC
Q 024415 214 DR 215 (268)
Q Consensus 214 Ds 215 (268)
+.
T Consensus 93 ~~ 94 (279)
T TIGR01452 93 EE 94 (279)
T ss_pred CH
Confidence 75
No 206
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=94.39 E-value=0.038 Score=45.79 Aligned_cols=41 Identities=15% Similarity=0.042 Sum_probs=35.8
Q ss_pred ChHHHHHHHHhcCCC--CCCcEEEEecCccchhcccccccccCCeEE
Q 024415 190 PKVEVLKQLQKKPEL--QGMTLHFVEDRLATLKNVIKEPELDGWNLY 234 (268)
Q Consensus 190 pk~~~~~~~~~~~~~--~~~~~l~IGDs~~Di~~~~~~A~~aG~~~v 234 (268)
.|+.+++.+.+..++ .++++++|||+.+|+.+ .+.+|+.++
T Consensus 181 sK~~al~~l~~~~~~~~~~~~~i~~GD~~nD~~m----l~~ag~~v~ 223 (225)
T TIGR02461 181 DKGKAIKRLLDLYKLRPGAIESVGLGDSENDFPM----FEVVDLAFL 223 (225)
T ss_pred CHHHHHHHHHHHhccccCcccEEEEcCCHHHHHH----HHhCCCcEe
Confidence 889999999888766 67799999999999999 999998544
No 207
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=94.36 E-value=0.056 Score=45.45 Aligned_cols=44 Identities=14% Similarity=-0.037 Sum_probs=36.5
Q ss_pred ChHHHHHHHHhcCCCCCCcEEEEecCccchhcccccccccCCeEEEeec
Q 024415 190 PKVEVLKQLQKKPELQGMTLHFVEDRLATLKNVIKEPELDGWNLYLGDW 238 (268)
Q Consensus 190 pk~~~~~~~~~~~~~~~~~~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~ 238 (268)
.|..+++++..+.++++++++.+|||.+|+.+ - ..+...|.|.+
T Consensus 165 ~K~~Al~~L~~~~~~~~~~vl~aGDSgND~~m----L-~~~~~~vvV~N 208 (247)
T PF05116_consen 165 SKGAALRYLMERWGIPPEQVLVAGDSGNDLEM----L-EGGDHGVVVGN 208 (247)
T ss_dssp SHHHHHHHHHHHHT--GGGEEEEESSGGGHHH----H-CCSSEEEE-TT
T ss_pred CHHHHHHHHHHHhCCCHHHEEEEeCCCCcHHH----H-cCcCCEEEEcC
Confidence 68999999999999999999999999999999 5 66667887764
No 208
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=94.21 E-value=0.12 Score=49.20 Aligned_cols=16 Identities=25% Similarity=0.416 Sum_probs=13.9
Q ss_pred CceeEeecCccccCch
Q 024415 2 ADLYALDFDGVLCDSC 17 (268)
Q Consensus 2 ~~~viFD~DGTL~d~~ 17 (268)
.|+|++|+||||++..
T Consensus 416 ~KLIfsDLDGTLLd~d 431 (694)
T PRK14502 416 KKIVYTDLDGTLLNPL 431 (694)
T ss_pred eeEEEEECcCCCcCCC
Confidence 3689999999999866
No 209
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=94.03 E-value=0.029 Score=42.00 Aligned_cols=15 Identities=13% Similarity=0.220 Sum_probs=13.1
Q ss_pred ceeEeecCccccCch
Q 024415 3 DLYALDFDGVLCDSC 17 (268)
Q Consensus 3 ~~viFD~DGTL~d~~ 17 (268)
|+|+||+||||++..
T Consensus 2 K~i~~DiDGTL~~~~ 16 (126)
T TIGR01689 2 KRLVMDLDNTITLTE 16 (126)
T ss_pred CEEEEeCCCCcccCC
Confidence 899999999998654
No 210
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=93.88 E-value=0.031 Score=43.49 Aligned_cols=81 Identities=16% Similarity=0.109 Sum_probs=54.2
Q ss_pred CCCCCChHHHHH--cCCCeEEEEcCCCHHHHHHHHHHhcCC-CCCCCeEEecCCC---ChHHHHHHHHhcCCCCCCcEEE
Q 024415 138 NRFYPGIPDALK--FASSRIYIVTTKQSRFADALLRELAGV-TIPPDRIYGLGTG---PKVEVLKQLQKKPELQGMTLHF 211 (268)
Q Consensus 138 ~~~~pg~~e~L~--~~g~~i~ivTn~~~~~~~~~l~~~~gl-~~~f~~i~~~~~~---pk~~~~~~~~~~~~~~~~~~l~ 211 (268)
..++||+.++|+ +..+.++|.|.+....++.+++. +.- ...|+.++..+.. .... .+.+ ...+...+++|+
T Consensus 35 v~~RP~l~~FL~~l~~~~ev~i~T~~~~~ya~~v~~~-ldp~~~~~~~~~~r~~~~~~~~~~-~KdL-~~l~~~~~~vvi 111 (159)
T PF03031_consen 35 VKLRPGLDEFLEELSKHYEVVIWTSASEEYAEPVLDA-LDPNGKLFSRRLYRDDCTFDKGSY-IKDL-SKLGRDLDNVVI 111 (159)
T ss_dssp EEE-TTHHHHHHHHHHHCEEEEE-SS-HHHHHHHHHH-HTTTTSSEEEEEEGGGSEEETTEE-E--G-GGSSS-GGGEEE
T ss_pred EeeCchHHHHHHHHHHhceEEEEEeehhhhhhHHHHh-hhhhcccccccccccccccccccc-ccch-HHHhhccccEEE
Confidence 457899999993 66699999999999999999999 554 4678888877642 1111 2222 233557899999
Q ss_pred EecCccchhc
Q 024415 212 VEDRLATLKN 221 (268)
Q Consensus 212 IGDs~~Di~~ 221 (268)
|+|++.-...
T Consensus 112 vDD~~~~~~~ 121 (159)
T PF03031_consen 112 VDDSPRKWAL 121 (159)
T ss_dssp EES-GGGGTT
T ss_pred EeCCHHHeec
Confidence 9999875544
No 211
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=93.78 E-value=0.11 Score=44.23 Aligned_cols=14 Identities=29% Similarity=0.553 Sum_probs=12.1
Q ss_pred eeEeecCccccCch
Q 024415 4 LYALDFDGVLCDSC 17 (268)
Q Consensus 4 ~viFD~DGTL~d~~ 17 (268)
+|+||+||||++..
T Consensus 16 li~~D~DGTLl~~~ 29 (266)
T PRK10187 16 AWFFDLDGTLAEIK 29 (266)
T ss_pred EEEEecCCCCCCCC
Confidence 79999999999743
No 212
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=93.55 E-value=0.24 Score=41.54 Aligned_cols=28 Identities=11% Similarity=0.051 Sum_probs=21.7
Q ss_pred HcCCCeEEEEcCCCHHHHHHHHHHhcCCC
Q 024415 149 KFASSRIYIVTTKQSRFADALLRELAGVT 177 (268)
Q Consensus 149 ~~~g~~i~ivTn~~~~~~~~~l~~~~gl~ 177 (268)
+++|+.++++|+++...+...++. +++.
T Consensus 34 ~~~gi~fv~aTGR~~~~~~~~~~~-~~~~ 61 (249)
T TIGR01485 34 RGEDSLLVYSTGRSPHSYKELQKQ-KPLL 61 (249)
T ss_pred hccCceEEEEcCCCHHHHHHHHhc-CCCC
Confidence 577788888888888888888777 5654
No 213
>PLN02423 phosphomannomutase
Probab=93.10 E-value=0.067 Score=44.93 Aligned_cols=40 Identities=18% Similarity=-0.079 Sum_probs=35.0
Q ss_pred ChHHHHHHHHhcCCCCCCcEEEEec----CccchhcccccccccCCeEEEeec
Q 024415 190 PKVEVLKQLQKKPELQGMTLHFVED----RLATLKNVIKEPELDGWNLYLGDW 238 (268)
Q Consensus 190 pk~~~~~~~~~~~~~~~~~~l~IGD----s~~Di~~~~~~A~~aG~~~v~v~~ 238 (268)
.|..+++.++ ++++++.+|| +.+|+++ -+.-|+.++.|+.
T Consensus 189 nKg~al~~L~-----~~~e~~aFGD~~~~~~ND~eM----l~~~~~~~~~~~~ 232 (245)
T PLN02423 189 DKTYCLQFLE-----DFDEIHFFGDKTYEGGNDHEI----FESERTIGHTVTS 232 (245)
T ss_pred CHHHHHHHhc-----CcCeEEEEeccCCCCCCcHHH----HhCCCcceEEeCC
Confidence 7899999998 8899999999 7999999 7777988888863
No 214
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=93.10 E-value=0.095 Score=42.74 Aligned_cols=86 Identities=15% Similarity=-0.028 Sum_probs=45.5
Q ss_pred HcCCCeEEEEcCCCHH---HHHHHHHHhcCCC----CCCCeEEecCCCChHHHHHHHHhcCCC-CCC-cEEEEecCccch
Q 024415 149 KFASSRIYIVTTKQSR---FADALLRELAGVT----IPPDRIYGLGTGPKVEVLKQLQKKPEL-QGM-TLHFVEDRLATL 219 (268)
Q Consensus 149 ~~~g~~i~ivTn~~~~---~~~~~l~~~~gl~----~~f~~i~~~~~~pk~~~~~~~~~~~~~-~~~-~~l~IGDs~~Di 219 (268)
..+-|...|++-+..+ .....|.. .|+. -.|-.+.+... .|..+.+.+.+.+.. .+. -++-+||+++|+
T Consensus 145 ~~rEyseti~~rs~d~~~~~~~~~L~e-~glt~v~garf~~v~~as~-gKg~Aa~~ll~~y~rl~~~r~t~~~GDg~nD~ 222 (274)
T COG3769 145 MLREYSETIIWRSSDERMAQFTARLNE-RGLTFVHGARFWHVLDASA-GKGQAANWLLETYRRLGGARTTLGLGDGPNDA 222 (274)
T ss_pred HHHHhhhheeecccchHHHHHHHHHHh-cCceEEeccceEEEecccc-CccHHHHHHHHHHHhcCceeEEEecCCCCCcc
Confidence 4555666666643333 13344555 4664 22333344333 344555554443332 122 479999999999
Q ss_pred hcccccccccCCeEEEeecCCCC
Q 024415 220 KNVIKEPELDGWNLYLGDWGYNT 242 (268)
Q Consensus 220 ~~~~~~A~~aG~~~v~v~~g~~~ 242 (268)
-. -..+..++.|. |+|.
T Consensus 223 Pl-----~ev~d~AfiV~-~lnr 239 (274)
T COG3769 223 PL-----LEVMDYAFIVK-GLNR 239 (274)
T ss_pred cH-----HHhhhhheeec-ccch
Confidence 88 45566666554 3443
No 215
>KOG0206 consensus P-type ATPase [General function prediction only]
Probab=93.03 E-value=2.2 Score=43.48 Aligned_cols=52 Identities=13% Similarity=-0.023 Sum_probs=35.8
Q ss_pred CCcEEEEecCccchhcccccccccCCeEEEeecCCCCHHHHHhhcCCCCEEEcCHhHHHhhc
Q 024415 206 GMTLHFVEDRLATLKNVIKEPELDGWNLYLGDWGYNTQKEREEAASIPRIQLLQLSDFSRKL 267 (268)
Q Consensus 206 ~~~~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~~~~p~~~~~~~~~l~~~l 267 (268)
+.-++.|||+.+|+-| .+.|.+ .|++. | ++-.++.-.+|+-+..+.-|.++|
T Consensus 794 ~~~TLAIGDGANDVsM----IQ~AhV-GVGIs-G----~EGmQAvmsSD~AIaqFrfL~rLL 845 (1151)
T KOG0206|consen 794 KAVTLAIGDGANDVSM----IQEAHV-GVGIS-G----QEGMQAVMSSDFAIAQFRFLERLL 845 (1151)
T ss_pred CceEEEeeCCCccchh----eeeCCc-Ceeec-c----chhhhhhhcccchHHHHHHHhhhh
Confidence 3446999999999999 787765 23332 2 233344456889888888887775
No 216
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=92.92 E-value=0.69 Score=38.68 Aligned_cols=94 Identities=14% Similarity=0.112 Sum_probs=74.2
Q ss_pred CCCCCChHHHHH------cCCCeEEEEcCCCHHHHHHHHHHhcCCCC--CCCeEEecCCC-ChHHHHHHHHhcCCCCCCc
Q 024415 138 NRFYPGIPDALK------FASSRIYIVTTKQSRFADALLRELAGVTI--PPDRIYGLGTG-PKVEVLKQLQKKPELQGMT 208 (268)
Q Consensus 138 ~~~~pg~~e~L~------~~g~~i~ivTn~~~~~~~~~l~~~~gl~~--~f~~i~~~~~~-pk~~~~~~~~~~~~~~~~~ 208 (268)
..++|+..++|+ +.|+.+.-.+|.+...+++..+ .|-.- +.-.-+++..| .+|..++.+.+.+.++
T Consensus 117 ~~LlPD~~etl~Aae~Lv~eGF~VlPY~~~D~v~a~rLed--~Gc~aVMPlgsPIGSg~Gl~n~~~l~~i~e~~~vp--- 191 (267)
T CHL00162 117 KYLLPDPIGTLKAAEFLVKKGFTVLPYINADPMLAKHLED--IGCATVMPLGSPIGSGQGLQNLLNLQIIIENAKIP--- 191 (267)
T ss_pred cccCCChHHHHHHHHHHHHCCCEEeecCCCCHHHHHHHHH--cCCeEEeeccCcccCCCCCCCHHHHHHHHHcCCCc---
Confidence 478999999992 8999999999998877666655 47541 12223445555 7899999999999999
Q ss_pred EEEEecC---ccchhcccccccccCCeEEEeecCCC
Q 024415 209 LHFVEDR---LATLKNVIKEPELDGWNLYLGDWGYN 241 (268)
Q Consensus 209 ~l~IGDs---~~Di~~~~~~A~~aG~~~v~v~~g~~ 241 (268)
++||=+ ++|+.. |...|++.|+++++--
T Consensus 192 -VivdAGIgt~sDa~~----AmElGaDgVL~nSaIa 222 (267)
T CHL00162 192 -VIIDAGIGTPSEASQ----AMELGASGVLLNTAVA 222 (267)
T ss_pred -EEEeCCcCCHHHHHH----HHHcCCCEEeecceee
Confidence 999976 479999 9999999999998853
No 217
>KOG3128 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.65 E-value=0.56 Score=39.14 Aligned_cols=81 Identities=11% Similarity=0.128 Sum_probs=49.4
Q ss_pred CCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecC-----C----CCh----------HHHHHH
Q 024415 140 FYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLG-----T----GPK----------VEVLKQ 197 (268)
Q Consensus 140 ~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~-----~----~pk----------~~~~~~ 197 (268)
+..|+.++. .++++|+.|.|.+-...++.++.+..++. .+-.+++.- + +-+ ...++.
T Consensus 139 lReg~~~ff~~L~~~~IP~~iFSAGigdiiEev~~q~~~~~-pn~k~vSN~~~F~edg~l~gF~~~Lihtfnkn~~v~~~ 217 (298)
T KOG3128|consen 139 LREGYEEFFEALQAHEIPLLIFSAGIGDIIEEVTRQKLVLH-PNVKFVSNYMDFDEDGNLCGFSQPLIHTFNKNSSVLQN 217 (298)
T ss_pred HHHHHHHHHHHHHhCCCceEEEecchHHHHHHHHHHHhccC-ccHHhhhhhhhhcccchhhhhhHHHHHHHccchHHHHh
Confidence 345555555 79999999999999988888887733433 332233210 1 111 112222
Q ss_pred HHhcCC--CCCCcEEEEecCccchhc
Q 024415 198 LQKKPE--LQGMTLHFVEDRLATLKN 221 (268)
Q Consensus 198 ~~~~~~--~~~~~~l~IGDs~~Di~~ 221 (268)
-...+. ....++++.||+..|+.+
T Consensus 218 ~s~yf~~~~~~~nVillGdsigdl~m 243 (298)
T KOG3128|consen 218 ESEYFHQLAGRVNVILLGDSIGDLHM 243 (298)
T ss_pred hhHHHhhccCCceEEEeccccccchh
Confidence 222222 245788999999999999
No 218
>COG5610 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=91.68 E-value=0.58 Score=42.33 Aligned_cols=97 Identities=14% Similarity=0.154 Sum_probs=72.3
Q ss_pred hccCCCCCChH--HHH---HcCCCeEEEEcCC--CHHHHHHHHHHhcCCCCCCCeEEec-CC---CChHHHHHHHHhcCC
Q 024415 135 IGANRFYPGIP--DAL---KFASSRIYIVTTK--QSRFADALLRELAGVTIPPDRIYGL-GT---GPKVEVLKQLQKKPE 203 (268)
Q Consensus 135 ~~~~~~~pg~~--e~L---~~~g~~i~ivTn~--~~~~~~~~l~~~~gl~~~f~~i~~~-~~---~pk~~~~~~~~~~~~ 203 (268)
++...++|..+ ++. .++|-+++++|.- +.+-.+..|.. +|....---++.+ +. +.....+..+.+..+
T Consensus 93 tEKevLypn~~~~eL~e~ai~n~krVIlISDMYlps~Il~~~L~s-~g~d~~nipiY~S~e~rl~KnSg~LFk~Vlk~En 171 (635)
T COG5610 93 TEKEVLYPNKKNIELVEEAIKNEKRVILISDMYLPSSILRTFLNS-FGPDFNNIPIYMSSEFRLKKNSGNLFKAVLKLEN 171 (635)
T ss_pred cceeEeeccccchHHHHHHHhCCCeEEEEecccCcHHHHHHHHHh-cCCCccCceeeecceeehhcccchHHHHHHhhcC
Confidence 44446777654 333 5899999999963 66667778888 7875333224544 32 466889999999999
Q ss_pred CCCCcEEEEecC-ccchhcccccccccCCeEEEe
Q 024415 204 LQGMTLHFVEDR-LATLKNVIKEPELDGWNLYLG 236 (268)
Q Consensus 204 ~~~~~~l~IGDs-~~Di~~~~~~A~~aG~~~v~v 236 (268)
++|...++|||. ..|... +++.|+.+...
T Consensus 172 Vd~~~w~H~GDN~~aD~l~----pk~LgI~Tlf~ 201 (635)
T COG5610 172 VDPKKWIHCGDNWVADYLK----PKNLGISTLFY 201 (635)
T ss_pred CChhheEEecCchhhhhcC----ccccchhHHHH
Confidence 999999999999 579999 99999977654
No 219
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=90.90 E-value=1.3 Score=36.85 Aligned_cols=95 Identities=15% Similarity=0.115 Sum_probs=68.5
Q ss_pred CCCCCChHHHH---H---cCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCC--eEEecCCC-ChHHHHHHHHhcCCCCCCc
Q 024415 138 NRFYPGIPDAL---K---FASSRIYIVTTKQSRFADALLRELAGVTIPPD--RIYGLGTG-PKVEVLKQLQKKPELQGMT 208 (268)
Q Consensus 138 ~~~~pg~~e~L---~---~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~--~i~~~~~~-pk~~~~~~~~~~~~~~~~~ 208 (268)
..++|+..+++ + +.|+.+.-+++.+....+.+.+ +|-.-.-- .-+++..+ .+|+.++.+.+..+++
T Consensus 103 ~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~--~G~~~vmPlg~pIGsg~Gi~~~~~I~~I~e~~~vp--- 177 (248)
T cd04728 103 KTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLED--AGCAAVMPLGSPIGSGQGLLNPYNLRIIIERADVP--- 177 (248)
T ss_pred cccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHH--cCCCEeCCCCcCCCCCCCCCCHHHHHHHHHhCCCc---
Confidence 46899999999 3 5699999566666666665555 46542211 23444444 5799999998877777
Q ss_pred EEEEecC---ccchhcccccccccCCeEEEeecCCCC
Q 024415 209 LHFVEDR---LATLKNVIKEPELDGWNLYLGDWGYNT 242 (268)
Q Consensus 209 ~l~IGDs---~~Di~~~~~~A~~aG~~~v~v~~g~~~ 242 (268)
+++|=+ +.|+.. |...|++.|.++++...
T Consensus 178 -VI~egGI~tpeda~~----AmelGAdgVlV~SAIt~ 209 (248)
T cd04728 178 -VIVDAGIGTPSDAAQ----AMELGADAVLLNTAIAK 209 (248)
T ss_pred -EEEeCCCCCHHHHHH----HHHcCCCEEEEChHhcC
Confidence 888855 579999 99999999999988643
No 220
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=90.85 E-value=0.39 Score=44.16 Aligned_cols=89 Identities=18% Similarity=0.137 Sum_probs=64.9
Q ss_pred CCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecCCC--ChHHHHHHHHhcCCCCCCcEEEEec
Q 024415 140 FYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGTG--PKVEVLKQLQKKPELQGMTLHFVED 214 (268)
Q Consensus 140 ~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~~~--pk~~~~~~~~~~~~~~~~~~l~IGD 214 (268)
.-||++|=. ++-|++.+.+|+.++.......+. .|++++.. +.+ .|.+.+++-+.+-.+. .|.||
T Consensus 448 vK~Gi~ERf~elR~MgIkTvM~TGDN~~TAa~IA~E-AGVDdfiA-----eatPEdK~~~I~~eQ~~grlV----AMtGD 517 (681)
T COG2216 448 VKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAE-AGVDDFIA-----EATPEDKLALIRQEQAEGRLV----AMTGD 517 (681)
T ss_pred cchhHHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHH-hCchhhhh-----cCChHHHHHHHHHHHhcCcEE----EEcCC
Confidence 558988766 799999999999999888888888 89977643 112 3566666666665565 99999
Q ss_pred CccchhcccccccccCCeEEEeecCCCCH
Q 024415 215 RLATLKNVIKEPELDGWNLYLGDWGYNTQ 243 (268)
Q Consensus 215 s~~Di~~~~~~A~~aG~~~v~v~~g~~~~ 243 (268)
+.+|--+ -..|.. .+++++|....
T Consensus 518 GTNDAPA----LAqAdV-g~AMNsGTqAA 541 (681)
T COG2216 518 GTNDAPA----LAQADV-GVAMNSGTQAA 541 (681)
T ss_pred CCCcchh----hhhcch-hhhhccccHHH
Confidence 9999888 444443 34677775433
No 221
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=90.56 E-value=2.6 Score=36.61 Aligned_cols=81 Identities=14% Similarity=0.114 Sum_probs=46.8
Q ss_pred CCCCCChHHHH---HcCC-CeEEEEcCCCHHHHHHHHHHhcCCC-------------CCCCeEEecCCCChHHHHHHHHh
Q 024415 138 NRFYPGIPDAL---KFAS-SRIYIVTTKQSRFADALLRELAGVT-------------IPPDRIYGLGTGPKVEVLKQLQK 200 (268)
Q Consensus 138 ~~~~pg~~e~L---~~~g-~~i~ivTn~~~~~~~~~l~~~~gl~-------------~~f~~i~~~~~~pk~~~~~~~~~ 200 (268)
..++|||.... .+.| .++..+||++-.....+-+- ++-. ..++.++.+..--|...+..+..
T Consensus 195 r~~ipGV~~~yr~l~~~~~apvfYvSnSPw~~f~~L~ef-i~~~~~P~GPl~L~~~g~~~~~i~~sga~rK~~~l~nil~ 273 (373)
T COG4850 195 RQVIPGVSAWYRALTNLGDAPVFYVSNSPWQLFPTLQEF-ITNRNFPYGPLLLRRWGGVLDNIIESGAARKGQSLRNILR 273 (373)
T ss_pred cCCCCCHHHHHHHHHhcCCCCeEEecCChhHhHHHHHHH-HhcCCCCCCchhHhhcCCcccccccchhhhcccHHHHHHH
Confidence 45888988777 3444 78999999877553332222 2211 22344544433345566664554
Q ss_pred cCCCCCCcEEEEecC-ccchhc
Q 024415 201 KPELQGMTLHFVEDR-LATLKN 221 (268)
Q Consensus 201 ~~~~~~~~~l~IGDs-~~Di~~ 221 (268)
++.- .+.+.|||+ ..|.+.
T Consensus 274 ~~p~--~kfvLVGDsGE~DpeI 293 (373)
T COG4850 274 RYPD--RKFVLVGDSGEHDPEI 293 (373)
T ss_pred hCCC--ceEEEecCCCCcCHHH
Confidence 4332 356889998 678764
No 222
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=90.18 E-value=0.34 Score=41.00 Aligned_cols=47 Identities=23% Similarity=0.304 Sum_probs=35.7
Q ss_pred CCCChHHHH---HcCCCeEEEEcCCCHH---HHHHHHHHhcCCCCCCCeEEecC
Q 024415 140 FYPGIPDAL---KFASSRIYIVTTKQSR---FADALLRELAGVTIPPDRIYGLG 187 (268)
Q Consensus 140 ~~pg~~e~L---~~~g~~i~ivTn~~~~---~~~~~l~~~~gl~~~f~~i~~~~ 187 (268)
++||+.++| +++|++++++||++.. .....++. +|+..-.+.|+++.
T Consensus 22 ~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~-~g~~~~~~~i~ts~ 74 (257)
T TIGR01458 22 AVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQR-LGFDISEDEVFTPA 74 (257)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHH-cCCCCCHHHeEcHH
Confidence 678999999 6899999999997554 46666777 68865556676653
No 223
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=90.11 E-value=0.46 Score=46.46 Aligned_cols=64 Identities=13% Similarity=-0.067 Sum_probs=46.8
Q ss_pred ChHHHHHHHHhcCCCCCCcEEEEecCccchhcccccccccCCeEEEeecCCCCHHHHHhhcCCCCEEEcCHhHHHhhc
Q 024415 190 PKVEVLKQLQKKPELQGMTLHFVEDRLATLKNVIKEPELDGWNLYLGDWGYNTQKEREEAASIPRIQLLQLSDFSRKL 267 (268)
Q Consensus 190 pk~~~~~~~~~~~~~~~~~~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~~~~p~~~~~~~~~l~~~l 267 (268)
.|..+++.+.+ +..++.++++||+.+|+.+ -+.++...+.|.-|. .. +..++.+.+..++.++|
T Consensus 657 nKG~al~~ll~--~~~~d~vl~~GD~~nDe~M----f~~~~~~~~~v~vG~-~~-------s~A~~~l~~~~eV~~~L 720 (726)
T PRK14501 657 NKGRAVRRLLE--AGPYDFVLAIGDDTTDEDM----FRALPETAITVKVGP-GE-------SRARYRLPSQREVRELL 720 (726)
T ss_pred CHHHHHHHHHh--cCCCCEEEEECCCCChHHH----HHhcccCceEEEECC-CC-------CcceEeCCCHHHHHHHH
Confidence 78999999988 7788899999999999999 666542233333342 11 34568889888877765
No 224
>KOG3107 consensus Predicted haloacid dehalogenase-like hydrolase (eyes absent) [General function prediction only]
Probab=89.57 E-value=2.4 Score=37.54 Aligned_cols=83 Identities=14% Similarity=0.021 Sum_probs=57.9
Q ss_pred cCCCeEEEEcCCCHHHHHHHHHHhcCCCCC--CCeEEecCCCChHHHHHHHHhcCCCCCCcEEEEecCccchhccccccc
Q 024415 150 FASSRIYIVTTKQSRFADALLRELAGVTIP--PDRIYGLGTGPKVEVLKQLQKKPELQGMTLHFVEDRLATLKNVIKEPE 227 (268)
Q Consensus 150 ~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~--f~~i~~~~~~pk~~~~~~~~~~~~~~~~~~l~IGDs~~Di~~~~~~A~ 227 (268)
+.+---++||+...-.....+-. +||... .+.|++...-.|...|+++..++|- .-.-+.|||+...-.+ |+
T Consensus 368 r~ncvnVlvTttqLipalaKvLL-~gLg~~fpiENIYSa~kiGKescFerI~~RFg~-K~~yvvIgdG~eee~a----AK 441 (468)
T KOG3107|consen 368 RKNCVNVLVTTTQLIPALAKVLL-YGLGSSFPIENIYSATKIGKESCFERIQSRFGR-KVVYVVIGDGVEEEQA----AK 441 (468)
T ss_pred ccceeEEEEeccchhHHHHHHHH-HhcCCcccchhhhhhhhccHHHHHHHHHHHhCC-ceEEEEecCcHHHHHH----HH
Confidence 33434566676544332222222 466644 4567777655899999999999998 4667889999999999 99
Q ss_pred ccCCeEEEeec
Q 024415 228 LDGWNLYLGDW 238 (268)
Q Consensus 228 ~aG~~~v~v~~ 238 (268)
+..|+++-++.
T Consensus 442 ~ln~PfwrI~~ 452 (468)
T KOG3107|consen 442 ALNMPFWRISS 452 (468)
T ss_pred hhCCceEeecc
Confidence 99998877653
No 225
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=89.34 E-value=0.65 Score=46.10 Aligned_cols=67 Identities=15% Similarity=0.065 Sum_probs=44.7
Q ss_pred ChHHHHHHHHh---cCCCCCCcEEEEecCccchhcccccccccCC-----------eEEEeecCCCCHHHHHhhcCCCCE
Q 024415 190 PKVEVLKQLQK---KPELQGMTLHFVEDRLATLKNVIKEPELDGW-----------NLYLGDWGYNTQKEREEAASIPRI 255 (268)
Q Consensus 190 pk~~~~~~~~~---~~~~~~~~~l~IGDs~~Di~~~~~~A~~aG~-----------~~v~v~~g~~~~~~~~~~~~~p~~ 255 (268)
.|..+++.+.+ ..+..++.+++|||..+|..+ -+.++- ..+.|.=|.. . +...+
T Consensus 762 nKG~Al~~Ll~~~~~~g~~~d~vl~~GDD~nDedM----F~~~~~~~~g~~~~~~~~~~~v~VG~~------~--S~A~y 829 (854)
T PLN02205 762 SKGLVAKRLLSIMQERGMLPDFVLCIGDDRSDEDM----FEVITSSMAGPSIAPRAEVFACTVGQK------P--SKAKY 829 (854)
T ss_pred CHHHHHHHHHHHHHhcCCCcccEEEEcCCccHHHH----HHHhhhhccCCcccccccceeEEECCC------C--ccCeE
Confidence 45777777764 467889999999999999999 443331 1223332321 1 34558
Q ss_pred EEcCHhHHHhhcC
Q 024415 256 QLLQLSDFSRKLK 268 (268)
Q Consensus 256 ~~~~~~~l~~~l~ 268 (268)
.+.+..++.++|+
T Consensus 830 ~L~d~~eV~~lL~ 842 (854)
T PLN02205 830 YLDDTAEIVRLMQ 842 (854)
T ss_pred ecCCHHHHHHHHH
Confidence 8999999888774
No 226
>PLN02580 trehalose-phosphatase
Probab=89.29 E-value=0.69 Score=41.41 Aligned_cols=70 Identities=19% Similarity=0.035 Sum_probs=47.8
Q ss_pred ChHHHHHHHHhcCCCCCCc---EEEEecCccchhccccccc-ccCCeEEEeecCCCCHHHHHhhcCCCCEEEcCHhHHHh
Q 024415 190 PKVEVLKQLQKKPELQGMT---LHFVEDRLATLKNVIKEPE-LDGWNLYLGDWGYNTQKEREEAASIPRIQLLQLSDFSR 265 (268)
Q Consensus 190 pk~~~~~~~~~~~~~~~~~---~l~IGDs~~Di~~~~~~A~-~aG~~~v~v~~g~~~~~~~~~~~~~p~~~~~~~~~l~~ 265 (268)
.|..+++.+++.+++...+ .++|||..+|..+.+.+.. ..|+ .|.|..+.. + ....+.+.+..++.+
T Consensus 301 ~KG~Av~~Ll~~~g~~~~d~~~pi~iGDD~TDedmF~~L~~~~~G~-~I~Vgn~~~---~-----t~A~y~L~dp~eV~~ 371 (384)
T PLN02580 301 NKGKAVEFLLESLGLSNCDDVLPIYIGDDRTDEDAFKVLREGNRGY-GILVSSVPK---E-----SNAFYSLRDPSEVME 371 (384)
T ss_pred CHHHHHHHHHHhcCCCcccceeEEEECCCchHHHHHHhhhccCCce-EEEEecCCC---C-----ccceEEcCCHHHHHH
Confidence 7899999999999887653 3899999999999322211 1343 455554321 1 234599999999887
Q ss_pred hcC
Q 024415 266 KLK 268 (268)
Q Consensus 266 ~l~ 268 (268)
+|+
T Consensus 372 ~L~ 374 (384)
T PLN02580 372 FLK 374 (384)
T ss_pred HHH
Confidence 763
No 227
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=88.99 E-value=0.93 Score=38.83 Aligned_cols=86 Identities=20% Similarity=0.385 Sum_probs=51.7
Q ss_pred HHHHHhhhhhhhccCCCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHh--cCCCC-CCCeEEecCCCChHHHHHH
Q 024415 124 DEWMDKDLTTWIGANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLREL--AGVTI-PPDRIYGLGTGPKVEVLKQ 197 (268)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~--~gl~~-~f~~i~~~~~~pk~~~~~~ 197 (268)
-....++...|. ...+.||+.+.+ ++.|.++.++||++....+..++++ +|+.. --+.|++ |...+..+
T Consensus 24 tfifDcDGVlW~-g~~~ipGs~e~l~~L~~~gK~i~fvTNNStksr~~y~kK~~~lG~~~v~e~~i~s----sa~~~a~y 98 (306)
T KOG2882|consen 24 TFIFDCDGVLWL-GEKPIPGSPEALNLLKSLGKQIIFVTNNSTKSREQYMKKFAKLGFNSVKEENIFS----SAYAIADY 98 (306)
T ss_pred EEEEcCCcceee-cCCCCCChHHHHHHHHHcCCcEEEEeCCCcchHHHHHHHHHHhCccccCcccccC----hHHHHHHH
Confidence 334455556676 557889999998 7999999999999877666665541 35542 1122222 44455555
Q ss_pred HHhcCCCCCCcEEEEecC
Q 024415 198 LQKKPELQGMTLHFVEDR 215 (268)
Q Consensus 198 ~~~~~~~~~~~~l~IGDs 215 (268)
+.... ...+.+..+|-.
T Consensus 99 lk~~~-~~~k~Vyvig~~ 115 (306)
T KOG2882|consen 99 LKKRK-PFGKKVYVIGEE 115 (306)
T ss_pred HHHhC-cCCCeEEEecch
Confidence 54433 333455555533
No 228
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=88.28 E-value=0.22 Score=35.71 Aligned_cols=13 Identities=38% Similarity=0.810 Sum_probs=11.5
Q ss_pred eEeecCccccCch
Q 024415 5 YALDFDGVLCDSC 17 (268)
Q Consensus 5 viFD~DGTL~d~~ 17 (268)
++||+||||++..
T Consensus 1 ~l~D~dGvl~~g~ 13 (101)
T PF13344_consen 1 FLFDLDGVLYNGN 13 (101)
T ss_dssp EEEESTTTSEETT
T ss_pred CEEeCccEeEeCC
Confidence 6899999999766
No 229
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=88.11 E-value=0.21 Score=38.76 Aligned_cols=15 Identities=40% Similarity=0.623 Sum_probs=12.5
Q ss_pred ceeEeecCccccCch
Q 024415 3 DLYALDFDGVLCDSC 17 (268)
Q Consensus 3 ~~viFD~DGTL~d~~ 17 (268)
|+++||+||||+.+.
T Consensus 1 k~LVlDLD~TLv~~~ 15 (159)
T PF03031_consen 1 KTLVLDLDGTLVHSS 15 (159)
T ss_dssp EEEEEE-CTTTEEEE
T ss_pred CEEEEeCCCcEEEEe
Confidence 579999999999877
No 230
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=88.07 E-value=2.7 Score=37.54 Aligned_cols=93 Identities=14% Similarity=0.194 Sum_probs=65.6
Q ss_pred hHHHHHcCCCeEEEEcCCCHHHHHHHHHHhcC--CCCCCCeEEecCCCC-------------------------------
Q 024415 144 IPDALKFASSRIYIVTTKQSRFADALLRELAG--VTIPPDRIYGLGTGP------------------------------- 190 (268)
Q Consensus 144 ~~e~L~~~g~~i~ivTn~~~~~~~~~l~~~~g--l~~~f~~i~~~~~~p------------------------------- 190 (268)
....++..|.++.++||+.-......+...+| ...+|+.++....+|
T Consensus 206 ~l~~~r~sGKk~fl~Tns~~~ytd~~mt~~~~~dW~~yfd~v~~~a~Kp~ff~e~~vlreV~t~~g~l~~g~~~~p~e~~ 285 (424)
T KOG2469|consen 206 LLSMLRDSGKKTFLHTNSDWDYTDIFMAFHYGFDWETYFDLVETRAAKPGFFHEGTVLREVEPQEGLLKNGDNTGPLEQG 285 (424)
T ss_pred chHHHHhhccceEEeeccccchhhHHHHHHhCCCcceeEEEEEEeccCCccccccceeeeeccccccccccccCCcchhc
Confidence 33344899999999999999888888876444 456788776553211
Q ss_pred ---hHHHHHHHHhcCCCCCCcEEEEecCc-cchhcccccccccCCeEEEeecC
Q 024415 191 ---KVEVLKQLQKKPELQGMTLHFVEDRL-ATLKNVIKEPELDGWNLYLGDWG 239 (268)
Q Consensus 191 ---k~~~~~~~~~~~~~~~~~~l~IGDs~-~Di~~~~~~A~~aG~~~v~v~~g 239 (268)
.+.....++...+....++++|||+. .||.-. -+.-|+.+++|...
T Consensus 286 ~~ySggs~~~~~~~l~~~g~diLy~gdHi~~dvl~s---kk~~~wrt~lv~pe 335 (424)
T KOG2469|consen 286 GVYSGGSLKTVETSMKVKGKDILYGGDHIWGDVLVS---KKRRGWRTVLVAPE 335 (424)
T ss_pred ccCCcchHHHHHHHhcccccceeecccceeeeEEec---ceecceEEEEEehh
Confidence 13344555556666668889999996 688775 45689999887643
No 231
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=87.73 E-value=0.38 Score=38.81 Aligned_cols=14 Identities=43% Similarity=0.655 Sum_probs=11.8
Q ss_pred eeEeecCccccCch
Q 024415 4 LYALDFDGVLCDSC 17 (268)
Q Consensus 4 ~viFD~DGTL~d~~ 17 (268)
+|+||+||||++..
T Consensus 1 li~~D~DgTL~~~~ 14 (204)
T TIGR01484 1 LLFFDLDGTLLDPN 14 (204)
T ss_pred CEEEeCcCCCcCCC
Confidence 48999999999754
No 232
>PRK00208 thiG thiazole synthase; Reviewed
Probab=87.67 E-value=3.2 Score=34.67 Aligned_cols=95 Identities=15% Similarity=0.101 Sum_probs=67.2
Q ss_pred CCCCCChHHHH---H---cCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCC--eEEecCCC-ChHHHHHHHHhcCCCCCCc
Q 024415 138 NRFYPGIPDAL---K---FASSRIYIVTTKQSRFADALLRELAGVTIPPD--RIYGLGTG-PKVEVLKQLQKKPELQGMT 208 (268)
Q Consensus 138 ~~~~pg~~e~L---~---~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~--~i~~~~~~-pk~~~~~~~~~~~~~~~~~ 208 (268)
..++|+..+++ + +.|+.+.-+++.+....+.+.+ +|-.-.-- .-+++..+ .+|+.++.+.+..+++
T Consensus 103 ~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~~--~G~~~vmPlg~pIGsg~gi~~~~~i~~i~e~~~vp--- 177 (250)
T PRK00208 103 KTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEE--AGCAAVMPLGAPIGSGLGLLNPYNLRIIIEQADVP--- 177 (250)
T ss_pred CCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHH--cCCCEeCCCCcCCCCCCCCCCHHHHHHHHHhcCCe---
Confidence 36789999999 3 5599999555555555555554 46542211 33444444 5799999998877777
Q ss_pred EEEEecC---ccchhcccccccccCCeEEEeecCCCC
Q 024415 209 LHFVEDR---LATLKNVIKEPELDGWNLYLGDWGYNT 242 (268)
Q Consensus 209 ~l~IGDs---~~Di~~~~~~A~~aG~~~v~v~~g~~~ 242 (268)
+++|=+ +.|+.. |...|++.|.++++...
T Consensus 178 -VIveaGI~tpeda~~----AmelGAdgVlV~SAItk 209 (250)
T PRK00208 178 -VIVDAGIGTPSDAAQ----AMELGADAVLLNTAIAV 209 (250)
T ss_pred -EEEeCCCCCHHHHHH----HHHcCCCEEEEChHhhC
Confidence 888855 479999 99999999999988643
No 233
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=87.65 E-value=3.5 Score=35.92 Aligned_cols=94 Identities=15% Similarity=0.198 Sum_probs=69.5
Q ss_pred CCCCCChHHHH---H---cCCCeEEEEcCCCHHHHHHHHHHhcCCC--CCCCeEEecCCC-ChHHHHHHHHhcCCCCCCc
Q 024415 138 NRFYPGIPDAL---K---FASSRIYIVTTKQSRFADALLRELAGVT--IPPDRIYGLGTG-PKVEVLKQLQKKPELQGMT 208 (268)
Q Consensus 138 ~~~~pg~~e~L---~---~~g~~i~ivTn~~~~~~~~~l~~~~gl~--~~f~~i~~~~~~-pk~~~~~~~~~~~~~~~~~ 208 (268)
..++|+..+++ + +.|+.+.++++.+...++...+ +|-. .+.-.-+++..+ .+|+.++.+.+.+.++
T Consensus 177 ~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~--~g~~avmPl~~pIGsg~gv~~p~~i~~~~e~~~vp--- 251 (326)
T PRK11840 177 KTLYPDMVETLKATEILVKEGFQVMVYCSDDPIAAKRLED--AGAVAVMPLGAPIGSGLGIQNPYTIRLIVEGATVP--- 251 (326)
T ss_pred CCcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHh--cCCEEEeeccccccCCCCCCCHHHHHHHHHcCCCc---
Confidence 36889999999 3 5599996677666666665555 4541 011233444444 7999999999998888
Q ss_pred EEEEecC---ccchhcccccccccCCeEEEeecCCC
Q 024415 209 LHFVEDR---LATLKNVIKEPELDGWNLYLGDWGYN 241 (268)
Q Consensus 209 ~l~IGDs---~~Di~~~~~~A~~aG~~~v~v~~g~~ 241 (268)
++||=+ .+|+.. |...|++.|+++++--
T Consensus 252 -VivdAGIg~~sda~~----AmelGadgVL~nSaIa 282 (326)
T PRK11840 252 -VLVDAGVGTASDAAV----AMELGCDGVLMNTAIA 282 (326)
T ss_pred -EEEeCCCCCHHHHHH----HHHcCCCEEEEcceec
Confidence 999977 469999 9999999999998854
No 234
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]
Probab=87.26 E-value=6.2 Score=38.79 Aligned_cols=105 Identities=23% Similarity=0.229 Sum_probs=69.3
Q ss_pred CCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCC--eEEec-CC-----------CCh----------
Q 024415 139 RFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPPD--RIYGL-GT-----------GPK---------- 191 (268)
Q Consensus 139 ~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~--~i~~~-~~-----------~pk---------- 191 (268)
|.+||+++.+ ++.|+.+-.||+.+-..++..... .|+...-+ .+..+ +- -||
T Consensus 647 PvRPgV~~AV~~Cq~AGItVRMVTGDNI~TAkAIA~e-CGILt~~~d~~~lEG~eFr~~s~ee~~~i~pkl~VlARSSP~ 725 (1034)
T KOG0204|consen 647 PVRPGVPEAVQLCQRAGITVRMVTGDNINTAKAIARE-CGILTPGGDFLALEGKEFRELSQEERDKIWPKLRVLARSSPN 725 (1034)
T ss_pred CCCCCcHHHHHHHHHcCcEEEEEeCCcHHHHHHHHHH-cccccCCCccceecchhhhhcCHHHHHhhhhhheeeecCCCc
Confidence 7889999999 699999999999999999999998 89864443 22222 20 033
Q ss_pred --HHHHHHHHhcCCCCCCcEEEEecCccchhcccccccccCCeEEEeecCCCCHHHHHhhcCCCCEEEc
Q 024415 192 --VEVLKQLQKKPELQGMTLHFVEDRLATLKNVIKEPELDGWNLYLGDWGYNTQKEREEAASIPRIQLL 258 (268)
Q Consensus 192 --~~~~~~~~~~~~~~~~~~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~~~~p~~~~~ 258 (268)
...++-+.+. .+=+.+-||+.+|-.+ -+.|.+ ++..|-...+.-++ ..|+++.
T Consensus 726 DK~lLVk~L~~~----g~VVAVTGDGTNDaPA----LkeADV---GlAMGIaGTeVAKE---aSDIIi~ 780 (1034)
T KOG0204|consen 726 DKHLLVKGLIKQ----GEVVAVTGDGTNDAPA----LKEADV---GLAMGIAGTEVAKE---ASDIIIL 780 (1034)
T ss_pred hHHHHHHHHHhc----CcEEEEecCCCCCchh----hhhccc---chhccccchhhhhh---hCCeEEE
Confidence 2233444422 2334677999999999 788876 33445433334343 4666654
No 235
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=86.83 E-value=4 Score=33.72 Aligned_cols=93 Identities=18% Similarity=0.157 Sum_probs=73.1
Q ss_pred CCCCCChHHHHH------cCCCeEEEEcCCCHHHHHHHHHHhcCCCC--CCCeEEecCCC-ChHHHHHHHHhcCCCCCCc
Q 024415 138 NRFYPGIPDALK------FASSRIYIVTTKQSRFADALLRELAGVTI--PPDRIYGLGTG-PKVEVLKQLQKKPELQGMT 208 (268)
Q Consensus 138 ~~~~pg~~e~L~------~~g~~i~ivTn~~~~~~~~~l~~~~gl~~--~f~~i~~~~~~-pk~~~~~~~~~~~~~~~~~ 208 (268)
..+.|+..++|+ +.|+.+...|+.+.-.+++..+ .|..- +...-+++..| -+++.++.+.++..++
T Consensus 110 ~tLlPD~~etl~Aae~Lv~eGF~VlPY~~dD~v~arrLee--~GcaavMPl~aPIGSg~G~~n~~~l~iiie~a~VP--- 184 (262)
T COG2022 110 KTLLPDPIETLKAAEQLVKEGFVVLPYTTDDPVLARRLEE--AGCAAVMPLGAPIGSGLGLQNPYNLEIIIEEADVP--- 184 (262)
T ss_pred cccCCChHHHHHHHHHHHhCCCEEeeccCCCHHHHHHHHh--cCceEeccccccccCCcCcCCHHHHHHHHHhCCCC---
Confidence 479999999993 8999999999999877777666 46532 22233455555 6799999999999999
Q ss_pred EEEEecC---ccchhcccccccccCCeEEEeecCC
Q 024415 209 LHFVEDR---LATLKNVIKEPELDGWNLYLGDWGY 240 (268)
Q Consensus 209 ~l~IGDs---~~Di~~~~~~A~~aG~~~v~v~~g~ 240 (268)
+.|+-+ ++|... |...|++.|++++..
T Consensus 185 -viVDAGiG~pSdAa~----aMElG~DaVL~NTAi 214 (262)
T COG2022 185 -VIVDAGIGTPSDAAQ----AMELGADAVLLNTAI 214 (262)
T ss_pred -EEEeCCCCChhHHHH----HHhcccceeehhhHh
Confidence 888866 478888 999999999998754
No 236
>PRK10444 UMP phosphatase; Provisional
Probab=86.12 E-value=1.3 Score=37.22 Aligned_cols=46 Identities=22% Similarity=0.273 Sum_probs=34.6
Q ss_pred CCCChHHHH---HcCCCeEEEEcCCCHHH---HHHHHHHhcCCCCCCCeEEec
Q 024415 140 FYPGIPDAL---KFASSRIYIVTTKQSRF---ADALLRELAGVTIPPDRIYGL 186 (268)
Q Consensus 140 ~~pg~~e~L---~~~g~~i~ivTn~~~~~---~~~~l~~~~gl~~~f~~i~~~ 186 (268)
++||+.++| +++|.+++++||++... ....|.. .|+.-..+.|+++
T Consensus 18 ~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~-~G~~~~~~~i~ts 69 (248)
T PRK10444 18 AVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFAT-AGVDVPDSVFYTS 69 (248)
T ss_pred eCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHH-cCCCCCHhhEecH
Confidence 679999998 68999999999987643 4445666 5886556667665
No 237
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=85.18 E-value=1.4 Score=36.46 Aligned_cols=92 Identities=15% Similarity=0.119 Sum_probs=61.7
Q ss_pred CCCCCChHHHH------HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCC--CCeEEecCCC-ChHHHHHHHHhcCCCCCCc
Q 024415 138 NRFYPGIPDAL------KFASSRIYIVTTKQSRFADALLRELAGVTIP--PDRIYGLGTG-PKVEVLKQLQKKPELQGMT 208 (268)
Q Consensus 138 ~~~~pg~~e~L------~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~--f~~i~~~~~~-pk~~~~~~~~~~~~~~~~~ 208 (268)
..++|+..+++ -+.|+.+.-.+|.+...+++..+ .|..-. .-.-+++..| -++..++.+.++.+++
T Consensus 103 ~~L~PD~~etl~Aae~Lv~eGF~VlPY~~~D~v~akrL~d--~GcaavMPlgsPIGSg~Gi~n~~~l~~i~~~~~vP--- 177 (247)
T PF05690_consen 103 KTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLED--AGCAAVMPLGSPIGSGRGIQNPYNLRIIIERADVP--- 177 (247)
T ss_dssp TT--B-HHHHHHHHHHHHHTT-EEEEEE-S-HHHHHHHHH--TT-SEBEEBSSSTTT---SSTHHHHHHHHHHGSSS---
T ss_pred CCcCCChhHHHHHHHHHHHCCCEEeecCCCCHHHHHHHHH--CCCCEEEecccccccCcCCCCHHHHHHHHHhcCCc---
Confidence 46889999999 28999999999988877766666 475311 1112233334 7799999999999999
Q ss_pred EEEEecC---ccchhcccccccccCCeEEEeecC
Q 024415 209 LHFVEDR---LATLKNVIKEPELDGWNLYLGDWG 239 (268)
Q Consensus 209 ~l~IGDs---~~Di~~~~~~A~~aG~~~v~v~~g 239 (268)
+.|+-+ ++|..- |...|++.|++++.
T Consensus 178 -vIvDAGiG~pSdaa~----AMElG~daVLvNTA 206 (247)
T PF05690_consen 178 -VIVDAGIGTPSDAAQ----AMELGADAVLVNTA 206 (247)
T ss_dssp -BEEES---SHHHHHH----HHHTT-SEEEESHH
T ss_pred -EEEeCCCCCHHHHHH----HHHcCCceeehhhH
Confidence 888766 479988 99999999999875
No 238
>PLN02423 phosphomannomutase
Probab=84.68 E-value=0.96 Score=37.92 Aligned_cols=35 Identities=11% Similarity=-0.030 Sum_probs=22.4
Q ss_pred eEEEeec----CCCCHHHHHhhcCCCCEEEcCHhHHHhhc
Q 024415 232 NLYLGDW----GYNTQKEREEAASIPRIQLLQLSDFSRKL 267 (268)
Q Consensus 232 ~~v~v~~----g~~~~~~~~~~~~~p~~~~~~~~~l~~~l 267 (268)
.++++.- ++|.-+=++..+. +...+.+++|...+|
T Consensus 202 e~~aFGD~~~~~~ND~eMl~~~~~-~~~~~~~~~~~~~~~ 240 (245)
T PLN02423 202 EIHFFGDKTYEGGNDHEIFESERT-IGHTVTSPDDTREQC 240 (245)
T ss_pred eEEEEeccCCCCCCcHHHHhCCCc-ceEEeCCHHHHHHHH
Confidence 4566655 5665544543233 568899999977765
No 239
>PTZ00174 phosphomannomutase; Provisional
Probab=84.55 E-value=1.5 Score=36.69 Aligned_cols=16 Identities=25% Similarity=0.449 Sum_probs=14.5
Q ss_pred CceeEeecCccccCch
Q 024415 2 ADLYALDFDGVLCDSC 17 (268)
Q Consensus 2 ~~~viFD~DGTL~d~~ 17 (268)
+|+|+||+||||+++.
T Consensus 5 ~klia~DlDGTLL~~~ 20 (247)
T PTZ00174 5 KTILLFDVDGTLTKPR 20 (247)
T ss_pred CeEEEEECcCCCcCCC
Confidence 4799999999999877
No 240
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=84.15 E-value=3.4 Score=35.57 Aligned_cols=44 Identities=25% Similarity=0.473 Sum_probs=32.8
Q ss_pred ccCCCCCChHHHH---HcCC-CeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEec
Q 024415 136 GANRFYPGIPDAL---KFAS-SRIYIVTTKQSRFADALLRELAGVTIPPDRIYGL 186 (268)
Q Consensus 136 ~~~~~~pg~~e~L---~~~g-~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~ 186 (268)
+...++|...+++ |+.| ++++||||+.. ..+++. +. .+|.++.+
T Consensus 89 GEPTLy~~L~elI~~~k~~g~~~tflvTNgsl---pdv~~~-L~---~~dql~~s 136 (296)
T COG0731 89 GEPTLYPNLGELIEEIKKRGKKTTFLVTNGSL---PDVLEE-LK---LPDQLYVS 136 (296)
T ss_pred CCcccccCHHHHHHHHHhcCCceEEEEeCCCh---HHHHHH-hc---cCCEEEEE
Confidence 4458999999988 7888 79999999998 455555 22 46666544
No 241
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=84.09 E-value=1.1 Score=42.93 Aligned_cols=45 Identities=18% Similarity=0.009 Sum_probs=38.8
Q ss_pred ChHHHHHHHHhcCCCCCCcEEEE--ecCccchhcccccccccCCeEEEeecC
Q 024415 190 PKVEVLKQLQKKPELQGMTLHFV--EDRLATLKNVIKEPELDGWNLYLGDWG 239 (268)
Q Consensus 190 pk~~~~~~~~~~~~~~~~~~l~I--GDs~~Di~~~~~~A~~aG~~~v~v~~g 239 (268)
.|..+++.+++.+++..++++.| ||+.+|+.+ -+.+|..+ ++...
T Consensus 613 dKG~AL~~L~e~~gI~~~eViafalGDs~NDisM----Le~Ag~gV-AM~~~ 659 (694)
T PRK14502 613 DKGKAIKILNELFRLNFGNIHTFGLGDSENDYSM----LETVDSPI-LVQRP 659 (694)
T ss_pred CHHHHHHHHHHHhCCCccceEEEEcCCcHhhHHH----HHhCCceE-EEcCC
Confidence 89999999999999988888999 999999999 89999844 45433
No 242
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=83.95 E-value=4.4 Score=32.74 Aligned_cols=81 Identities=14% Similarity=0.112 Sum_probs=51.8
Q ss_pred CCCChHHHHH--cCCCeEEEEcCCCHHHHHHHHHHhcCCCCC--CCe--EEecC---------CCCh-HHHHHHHHhcCC
Q 024415 140 FYPGIPDALK--FASSRIYIVTTKQSRFADALLRELAGVTIP--PDR--IYGLG---------TGPK-VEVLKQLQKKPE 203 (268)
Q Consensus 140 ~~pg~~e~L~--~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~--f~~--i~~~~---------~~pk-~~~~~~~~~~~~ 203 (268)
.+|++.++|+ ...|.|+|-|.+...+++..+.. +|+... +.. +...+ .++. ..-+..+-.+++
T Consensus 46 kRP~l~eFL~~~~~~feIvVwTAa~~~ya~~~l~~-l~~~~~~~~~i~~~ld~~~~~~~~~~~~g~~~vKdL~~lw~~l~ 124 (195)
T TIGR02245 46 MRPYLHEFLTSAYEDYDIVIWSATSMKWIEIKMTE-LGVLTNPNYKITFLLDSTAMITVHTPRRGKFDVKPLGVIWALLP 124 (195)
T ss_pred eCCCHHHHHHHHHhCCEEEEEecCCHHHHHHHHHH-hcccCCccceEEEEeccccceeeEeeccCcEEEeecHHhhhhcc
Confidence 5699999993 67899999999999999999998 676422 111 11111 1211 111222322333
Q ss_pred --CCCCcEEEEecCccchhc
Q 024415 204 --LQGMTLHFVEDRLATLKN 221 (268)
Q Consensus 204 --~~~~~~l~IGDs~~Di~~ 221 (268)
.+..++|+|+|++.....
T Consensus 125 ~~~~~~ntiiVDd~p~~~~~ 144 (195)
T TIGR02245 125 EFYSMKNTIMFDDLRRNFLM 144 (195)
T ss_pred cCCCcccEEEEeCCHHHHhc
Confidence 367899999999764433
No 243
>KOG0210 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=81.61 E-value=6 Score=38.10 Aligned_cols=65 Identities=20% Similarity=0.070 Sum_probs=41.1
Q ss_pred ChHHHHHHHHhcCCCCCCcEEEEecCccchhcccccccccCCeEEEeecCCCCHHHHHhhcCCCCEEEcCHhHHHhhc
Q 024415 190 PKVEVLKQLQKKPELQGMTLHFVEDRLATLKNVIKEPELDGWNLYLGDWGYNTQKEREEAASIPRIQLLQLSDFSRKL 267 (268)
Q Consensus 190 pk~~~~~~~~~~~~~~~~~~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~~~~p~~~~~~~~~l~~~l 267 (268)
.|.++.+.+.++-+ .++-.|||+-+|+-+ -+.|.+ .|++...-+. |+..-+|+.+..+..+.++|
T Consensus 768 QKA~v~~llq~~t~---krvc~IGDGGNDVsM----Iq~A~~-GiGI~gkEGk-----QASLAADfSItqF~Hv~rLL 832 (1051)
T KOG0210|consen 768 QKAQVVRLLQKKTG---KRVCAIGDGGNDVSM----IQAADV-GIGIVGKEGK-----QASLAADFSITQFSHVSRLL 832 (1051)
T ss_pred HHHHHHHHHHHhhC---ceEEEEcCCCccchh----eeeccc-ceeeeccccc-----ccchhccccHHHHHHHHHHh
Confidence 56777777776655 567899999999999 554443 1233211122 22234678888888877765
No 244
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=81.57 E-value=0.72 Score=38.59 Aligned_cols=33 Identities=9% Similarity=0.016 Sum_probs=22.2
Q ss_pred HHHHHHHHHhcCCCCCCCeEEecCCCChHHHHHHH
Q 024415 164 RFADALLRELAGVTIPPDRIYGLGTGPKVEVLKQL 198 (268)
Q Consensus 164 ~~~~~~l~~~~gl~~~f~~i~~~~~~pk~~~~~~~ 198 (268)
..+..+++. +++.. -..++.+|+..+..+++.+
T Consensus 170 ~a~~~~~~~-~~~~~-~~~i~iGD~~~D~~~~~~~ 202 (244)
T TIGR00685 170 EIVKRLLWH-QPGSG-ISPVYLGDDITDEDAFRVV 202 (244)
T ss_pred HHHHHHHHh-cccCC-CceEEEcCCCcHHHHHHHH
Confidence 466777777 67643 2345566666888888877
No 245
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=81.23 E-value=2.6 Score=41.67 Aligned_cols=18 Identities=22% Similarity=0.137 Sum_probs=13.8
Q ss_pred CCCCEEEcCHhHHHhhcC
Q 024415 251 SIPRIQLLQLSDFSRKLK 268 (268)
Q Consensus 251 ~~p~~~~~~~~~l~~~l~ 268 (268)
+...+.+++..|+.++|+
T Consensus 764 s~A~y~l~~~~eV~~lL~ 781 (797)
T PLN03063 764 TKARYVLDSSNDVVSLLH 781 (797)
T ss_pred ccCeecCCCHHHHHHHHH
Confidence 345689999999888773
No 246
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=80.83 E-value=2.3 Score=42.32 Aligned_cols=17 Identities=29% Similarity=0.487 Sum_probs=14.0
Q ss_pred CCceeEeecCccccCch
Q 024415 1 MADLYALDFDGVLCDSC 17 (268)
Q Consensus 1 M~~~viFD~DGTL~d~~ 17 (268)
|.++|+||+||||++..
T Consensus 595 ~~rlI~LDyDGTLlp~~ 611 (854)
T PLN02205 595 TTRAILLDYDGTLMPQA 611 (854)
T ss_pred cCeEEEEecCCcccCCc
Confidence 45789999999999654
No 247
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=80.37 E-value=2.7 Score=35.70 Aligned_cols=38 Identities=24% Similarity=0.182 Sum_probs=30.5
Q ss_pred CChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCC
Q 024415 142 PGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVTIPP 180 (268)
Q Consensus 142 pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f 180 (268)
|++.++| +++|++++++||++...+...++. +|+..++
T Consensus 24 ~~~~~ai~~l~~~Gi~~~iaTgR~~~~~~~~~~~-l~l~~~~ 64 (273)
T PRK00192 24 EPAKPALKALKEKGIPVIPCTSKTAAEVEVLRKE-LGLEDPF 64 (273)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHH-cCCCCCE
Confidence 3344555 689999999999999999999999 7886554
No 248
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=77.08 E-value=6.1 Score=37.73 Aligned_cols=82 Identities=15% Similarity=0.062 Sum_probs=52.1
Q ss_pred cCCCCCChHHHHH--cCCCeEEEEcCCCHHHHHHHHHHhcCC-CCCC-CeEEecCCCChHHHHHHHHhcCCCCCCcEEEE
Q 024415 137 ANRFYPGIPDALK--FASSRIYIVTTKQSRFADALLRELAGV-TIPP-DRIYGLGTGPKVEVLKQLQKKPELQGMTLHFV 212 (268)
Q Consensus 137 ~~~~~pg~~e~L~--~~g~~i~ivTn~~~~~~~~~l~~~~gl-~~~f-~~i~~~~~~pk~~~~~~~~~~~~~~~~~~l~I 212 (268)
.++++|++.++|+ +.=+.+.|.|.+++.++..+++- +.= ..+| +.|++.+..|......... +..|....++|
T Consensus 199 ~vKlRP~~~efL~~~sklfemhVyTmg~R~YA~~i~~l-iDP~~~lF~dRIisrde~~~~kt~dL~~--~~p~g~smvvI 275 (635)
T KOG0323|consen 199 LVKLRPFVHEFLKEANKLFEMHVYTMGTRDYALEIAKL-IDPEGKYFGDRIISRDESPFFKTLDLVL--LFPCGDSMVVI 275 (635)
T ss_pred EEEeCccHHHHHHHHHhhceeEEEeccchHHHHHHHHH-hCCCCccccceEEEecCCCccccccccc--CCCCCCccEEE
Confidence 3579999999993 55599999999999999988886 321 2344 6788888754433332222 22333333555
Q ss_pred ecCccchhc
Q 024415 213 EDRLATLKN 221 (268)
Q Consensus 213 GDs~~Di~~ 221 (268)
.|...|+=.
T Consensus 276 IDDr~dVW~ 284 (635)
T KOG0323|consen 276 IDDRSDVWP 284 (635)
T ss_pred EeCcccccc
Confidence 555444443
No 249
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=76.70 E-value=15 Score=29.99 Aligned_cols=74 Identities=18% Similarity=0.290 Sum_probs=47.6
Q ss_pred CCCChHHHH---HcCCCeEEEEcCCCHHH---HHHHHHHhcCCCCCCCeEEecCCCChHHHHHHHHhcCCCCCCcEEEEe
Q 024415 140 FYPGIPDAL---KFASSRIYIVTTKQSRF---ADALLRELAGVTIPPDRIYGLGTGPKVEVLKQLQKKPELQGMTLHFVE 213 (268)
Q Consensus 140 ~~pg~~e~L---~~~g~~i~ivTn~~~~~---~~~~l~~~~gl~~~f~~i~~~~~~pk~~~~~~~~~~~~~~~~~~l~IG 213 (268)
..||..|.| +.++.++=.+||..... +...|.+ +|+.-.-+.|++ |-|.+ ..++++.++.|- ++|.
T Consensus 24 avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL~r-lgf~v~eeei~t----sl~aa-~~~~~~~~lrP~--l~v~ 95 (262)
T KOG3040|consen 24 AVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERLQR-LGFDVSEEEIFT----SLPAA-RQYLEENQLRPY--LIVD 95 (262)
T ss_pred cCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHHHHH-hCCCccHHHhcC----ccHHH-HHHHHhcCCCce--EEEc
Confidence 679999988 57889999999976554 4455666 576544344443 33333 444445566666 7788
Q ss_pred cCc-cchhc
Q 024415 214 DRL-ATLKN 221 (268)
Q Consensus 214 Ds~-~Di~~ 221 (268)
|.. .|...
T Consensus 96 d~a~~dF~g 104 (262)
T KOG3040|consen 96 DDALEDFDG 104 (262)
T ss_pred ccchhhCCC
Confidence 774 56665
No 250
>KOG0209 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=75.72 E-value=6.3 Score=38.69 Aligned_cols=40 Identities=18% Similarity=0.287 Sum_probs=31.3
Q ss_pred cCCCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCC
Q 024415 137 ANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVT 177 (268)
Q Consensus 137 ~~~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~ 177 (268)
.+|+.|++++++ +..+.+++.+|+.+.-.+-.+.+. .|+-
T Consensus 673 ~CPlK~Ds~~~I~el~~SSH~vvMITGDnpLTAchVak~-v~iv 715 (1160)
T KOG0209|consen 673 SCPLKPDSKKTIKELNNSSHRVVMITGDNPLTACHVAKE-VGIV 715 (1160)
T ss_pred eCCCCccHHHHHHHHhccCceEEEEeCCCccchheehhe-eeee
Confidence 358899999998 588899999999877666666666 5654
No 251
>PF06437 ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR009453 The Saccharomyces cerevisiae ISN1 (YOR155c) gene encodes an IMP-specific 5'-nucleotidase, which catalyses degradation of IMP to inosine as part of the purine salvage pathway.; GO: 0000287 magnesium ion binding, 0016791 phosphatase activity, 0009117 nucleotide metabolic process
Probab=75.62 E-value=4 Score=36.26 Aligned_cols=46 Identities=20% Similarity=0.078 Sum_probs=32.6
Q ss_pred CChHHHHHHHHhcC----CCCCCcEEEEecCc-----cchhcccccccccCCeEEEeecCC
Q 024415 189 GPKVEVLKQLQKKP----ELQGMTLHFVEDRL-----ATLKNVIKEPELDGWNLYLGDWGY 240 (268)
Q Consensus 189 ~pk~~~~~~~~~~~----~~~~~~~l~IGDs~-----~Di~~~~~~A~~aG~~~v~v~~g~ 240 (268)
|.|...+..+++-+ ++.|+++++|||.- +|.. |+.+| .++||.++.
T Consensus 348 GdKs~GV~~lQ~y~~~~~~i~~~~tLHVGDQF~s~GaNDfk-----aR~a~-~t~WIasP~ 402 (408)
T PF06437_consen 348 GDKSLGVRALQKYFDPEGGIKPSETLHVGDQFLSAGANDFK-----ARLAC-TTAWIASPQ 402 (408)
T ss_pred CCcHHhHHHHHHHHHhccCCCccceeeehhhhhccCCcchh-----hhhhc-eeeEecCHH
Confidence 57777666666555 89999999999972 3444 46666 478887653
No 252
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=72.23 E-value=7.9 Score=36.40 Aligned_cols=78 Identities=14% Similarity=0.011 Sum_probs=48.4
Q ss_pred HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecCCC-ChHHHHHHHHhcCCCCCCcEEEEecCccchhccccccc
Q 024415 149 KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGTG-PKVEVLKQLQKKPELQGMTLHFVEDRLATLKNVIKEPE 227 (268)
Q Consensus 149 ~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~~~-pk~~~~~~~~~~~~~~~~~~l~IGDs~~Di~~~~~~A~ 227 (268)
+..+-++++|+-......-..+..++++. ++. ++-.+. --...++.+.. .|.. ++|||+.. ... |+
T Consensus 94 ~~~~~~ia~vg~~~~~~~~~~~~~ll~~~--i~~-~~~~~~~e~~~~~~~l~~-~G~~----~viG~~~~-~~~----A~ 160 (526)
T TIGR02329 94 RRIASSIGVVTHQDTPPALRRFQAAFNLD--IVQ-RSYVTEEDARSCVNDLRA-RGIG----AVVGAGLI-TDL----AE 160 (526)
T ss_pred HhcCCcEEEEecCcccHHHHHHHHHhCCc--eEE-EEecCHHHHHHHHHHHHH-CCCC----EEECChHH-HHH----HH
Confidence 45566889998655544444445445554 222 222221 12344555554 5888 99999954 566 89
Q ss_pred ccCCeEEEeecC
Q 024415 228 LDGWNLYLGDWG 239 (268)
Q Consensus 228 ~aG~~~v~v~~g 239 (268)
..|++.|.+.++
T Consensus 161 ~~gl~~ili~s~ 172 (526)
T TIGR02329 161 QAGLHGVFLYSA 172 (526)
T ss_pred HcCCceEEEecH
Confidence 999999999775
No 253
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=72.07 E-value=2 Score=36.51 Aligned_cols=32 Identities=19% Similarity=0.202 Sum_probs=27.1
Q ss_pred ChHHHHHHHHhcCCCCCCcEEEEecCccchhc
Q 024415 190 PKVEVLKQLQKKPELQGMTLHFVEDRLATLKN 221 (268)
Q Consensus 190 pk~~~~~~~~~~~~~~~~~~l~IGDs~~Di~~ 221 (268)
.|..+++++..+......-+++.||...|-.+
T Consensus 182 ~KG~a~~~i~~~~~~~~~~~~~aGDD~TDE~~ 213 (266)
T COG1877 182 SKGAAIKYIMDELPFDGRFPIFAGDDLTDEDA 213 (266)
T ss_pred chHHHHHHHHhcCCCCCCcceecCCCCccHHH
Confidence 68999999998877776678999999887766
No 254
>PLN02151 trehalose-phosphatase
Probab=71.53 E-value=7.2 Score=34.63 Aligned_cols=69 Identities=13% Similarity=0.007 Sum_probs=44.6
Q ss_pred ChHHHHHHHHhcCCCCCC---cEEEEecCccchhccccccc-ccCCeEEEeecCCCCHHHHHhhcCCCCEEEcCHhHHHh
Q 024415 190 PKVEVLKQLQKKPELQGM---TLHFVEDRLATLKNVIKEPE-LDGWNLYLGDWGYNTQKEREEAASIPRIQLLQLSDFSR 265 (268)
Q Consensus 190 pk~~~~~~~~~~~~~~~~---~~l~IGDs~~Di~~~~~~A~-~aG~~~v~v~~g~~~~~~~~~~~~~p~~~~~~~~~l~~ 265 (268)
.|..+++.+.+.++.... -.+||||...|-.+++.+.. ..|+ .|.|..+ .. . ....+.+.++.++.+
T Consensus 269 dKG~Av~~Ll~~~~~~~~~~~~pvyiGDD~TDEDaF~~L~~~~~G~-gI~Vg~~--~k----~--T~A~y~L~dp~eV~~ 339 (354)
T PLN02151 269 DKGKALEFLLESLGYANCTDVFPIYIGDDRTDEDAFKILRDKKQGL-GILVSKY--AK----E--TNASYSLQEPDEVME 339 (354)
T ss_pred CHHHHHHHHHHhcccccCCCCeEEEEcCCCcHHHHHHHHhhcCCCc-cEEeccC--CC----C--CcceEeCCCHHHHHH
Confidence 689999999988765422 27999999998888432211 1233 3444322 11 1 245699999999877
Q ss_pred hc
Q 024415 266 KL 267 (268)
Q Consensus 266 ~l 267 (268)
+|
T Consensus 340 ~L 341 (354)
T PLN02151 340 FL 341 (354)
T ss_pred HH
Confidence 76
No 255
>PLN02580 trehalose-phosphatase
Probab=71.14 E-value=2.1 Score=38.42 Aligned_cols=48 Identities=19% Similarity=0.176 Sum_probs=31.4
Q ss_pred HHHHHHHHHhcCCCCCCC--eEEecCCCChHHHHHHHHhc-CCCCCCcEEEEecCc
Q 024415 164 RFADALLRELAGVTIPPD--RIYGLGTGPKVEVLKQLQKK-PELQGMTLHFVEDRL 216 (268)
Q Consensus 164 ~~~~~~l~~~~gl~~~f~--~i~~~~~~pk~~~~~~~~~~-~~~~~~~~l~IGDs~ 216 (268)
..++.+++. +|+...-+ .++.+|+..+.++|+.+... .+.. +.||...
T Consensus 304 ~Av~~Ll~~-~g~~~~d~~~pi~iGDD~TDedmF~~L~~~~~G~~----I~Vgn~~ 354 (384)
T PLN02580 304 KAVEFLLES-LGLSNCDDVLPIYIGDDRTDEDAFKVLREGNRGYG----ILVSSVP 354 (384)
T ss_pred HHHHHHHHh-cCCCcccceeEEEECCCchHHHHHHhhhccCCceE----EEEecCC
Confidence 356677787 78764312 25666766899999988653 3555 7777644
No 256
>PLN02151 trehalose-phosphatase
Probab=71.09 E-value=2.1 Score=37.91 Aligned_cols=47 Identities=23% Similarity=0.223 Sum_probs=30.0
Q ss_pred HHHHHHHHHhcCCCCCCC--eEEecCCCChHHHHHHHHhc-CCCCCCcEEEEecC
Q 024415 164 RFADALLRELAGVTIPPD--RIYGLGTGPKVEVLKQLQKK-PELQGMTLHFVEDR 215 (268)
Q Consensus 164 ~~~~~~l~~~~gl~~~f~--~i~~~~~~pk~~~~~~~~~~-~~~~~~~~l~IGDs 215 (268)
..++.+++. +++...-+ .++.+|+..+..+|+.+... .++. +.||..
T Consensus 272 ~Av~~Ll~~-~~~~~~~~~~pvyiGDD~TDEDaF~~L~~~~~G~g----I~Vg~~ 321 (354)
T PLN02151 272 KALEFLLES-LGYANCTDVFPIYIGDDRTDEDAFKILRDKKQGLG----ILVSKY 321 (354)
T ss_pred HHHHHHHHh-cccccCCCCeEEEEcCCCcHHHHHHHHhhcCCCcc----EEeccC
Confidence 355667777 67653322 35566666899999988653 3666 777743
No 257
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=70.92 E-value=2.4 Score=32.43 Aligned_cols=15 Identities=33% Similarity=0.445 Sum_probs=13.2
Q ss_pred ceeEeecCccccCch
Q 024415 3 DLYALDFDGVLCDSC 17 (268)
Q Consensus 3 ~~viFD~DGTL~d~~ 17 (268)
+.+++|+||||+++.
T Consensus 3 ~~lvldld~tl~~~~ 17 (148)
T smart00577 3 KTLVLDLDETLVHST 17 (148)
T ss_pred cEEEEeCCCCeECCC
Confidence 478999999999875
No 258
>PLN02588 glycerol-3-phosphate acyltransferase
Probab=70.79 E-value=42 Score=31.37 Aligned_cols=43 Identities=16% Similarity=0.116 Sum_probs=27.5
Q ss_pred CCCChHHHHHcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecC
Q 024415 140 FYPGIPDALKFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLG 187 (268)
Q Consensus 140 ~~pg~~e~L~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~ 187 (268)
+.+...+++++-+ +.+++|..++-+++..++.++| .|.+++.+
T Consensus 134 v~~e~~~v~~~~~-~~~vv~~~PrvMve~Flkeyl~----~d~V~g~E 176 (525)
T PLN02588 134 VGLEMFQVLKRGG-KRVGVSDLPQVMIDVFLRDYLE----IEVVVGRD 176 (525)
T ss_pred cCHHHHHHHhhcC-cEEEEecCCHHHHHHHHHHhcC----cceEeeee
Confidence 3344445555545 4555556999999999998555 45555554
No 259
>PLN03017 trehalose-phosphatase
Probab=70.61 E-value=8.9 Score=34.21 Aligned_cols=69 Identities=13% Similarity=-0.040 Sum_probs=45.3
Q ss_pred ChHHHHHHHHhcCCCC---CCcEEEEecCccchhcccccccccC-CeEEEeecCCCCHHHHHhhcCCCCEEEcCHhHHHh
Q 024415 190 PKVEVLKQLQKKPELQ---GMTLHFVEDRLATLKNVIKEPELDG-WNLYLGDWGYNTQKEREEAASIPRIQLLQLSDFSR 265 (268)
Q Consensus 190 pk~~~~~~~~~~~~~~---~~~~l~IGDs~~Di~~~~~~A~~aG-~~~v~v~~g~~~~~~~~~~~~~p~~~~~~~~~l~~ 265 (268)
.|..+++.++..++.. ..-.+||||...|-.+++.+ +..| ...|.|... .. . ....+.+.++.++..
T Consensus 283 dKG~Av~~LL~~l~~~~~~~~~pvyiGDD~TDEDaF~~L-~~~~~G~gI~VG~~--~k----~--T~A~y~L~dp~eV~~ 353 (366)
T PLN03017 283 DKGKALEFLLESLGFGNTNNVFPVYIGDDRTDEDAFKML-RDRGEGFGILVSKF--PK----D--TDASYSLQDPSEVMD 353 (366)
T ss_pred CHHHHHHHHHHhcccccCCCceEEEeCCCCccHHHHHHH-hhcCCceEEEECCC--CC----C--CcceEeCCCHHHHHH
Confidence 6899999999987754 23579999999998884333 1111 234445321 11 1 345589999998877
Q ss_pred hc
Q 024415 266 KL 267 (268)
Q Consensus 266 ~l 267 (268)
+|
T Consensus 354 fL 355 (366)
T PLN03017 354 FL 355 (366)
T ss_pred HH
Confidence 66
No 260
>PLN03017 trehalose-phosphatase
Probab=70.50 E-value=2.2 Score=38.02 Aligned_cols=48 Identities=15% Similarity=0.133 Sum_probs=32.0
Q ss_pred HHHHHHHHHhcCCCCC-CC-eEEecCCCChHHHHHHHHhc-CCCCCCcEEEEecCc
Q 024415 164 RFADALLRELAGVTIP-PD-RIYGLGTGPKVEVLKQLQKK-PELQGMTLHFVEDRL 216 (268)
Q Consensus 164 ~~~~~~l~~~~gl~~~-f~-~i~~~~~~pk~~~~~~~~~~-~~~~~~~~l~IGDs~ 216 (268)
..++.+++. +|+... -+ .++.+|+..+..+|+.+... .++. |.||+..
T Consensus 286 ~Av~~LL~~-l~~~~~~~~~pvyiGDD~TDEDaF~~L~~~~~G~g----I~VG~~~ 336 (366)
T PLN03017 286 KALEFLLES-LGFGNTNNVFPVYIGDDRTDEDAFKMLRDRGEGFG----ILVSKFP 336 (366)
T ss_pred HHHHHHHHh-cccccCCCceEEEeCCCCccHHHHHHHhhcCCceE----EEECCCC
Confidence 356777777 676532 12 35566666889999988653 4677 8999653
No 261
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=69.87 E-value=2.4 Score=34.24 Aligned_cols=15 Identities=40% Similarity=0.456 Sum_probs=13.3
Q ss_pred ceeEeecCccccCch
Q 024415 3 DLYALDFDGVLCDSC 17 (268)
Q Consensus 3 ~~viFD~DGTL~d~~ 17 (268)
+++++|+|+||+|..
T Consensus 22 klLVLDLDeTLvh~~ 36 (195)
T TIGR02245 22 KLLVLDIDYTLFDHR 36 (195)
T ss_pred cEEEEeCCCceEccc
Confidence 589999999999864
No 262
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=68.04 E-value=4.1 Score=36.85 Aligned_cols=15 Identities=27% Similarity=0.423 Sum_probs=13.6
Q ss_pred ceeEeecCccccCch
Q 024415 3 DLYALDFDGVLCDSC 17 (268)
Q Consensus 3 ~~viFD~DGTL~d~~ 17 (268)
++|++|+||||.-+.
T Consensus 376 kiVVsDiDGTITkSD 390 (580)
T COG5083 376 KIVVSDIDGTITKSD 390 (580)
T ss_pred cEEEEecCCcEEehh
Confidence 689999999998777
No 263
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=67.43 E-value=2.6 Score=41.24 Aligned_cols=14 Identities=43% Similarity=0.669 Sum_probs=12.4
Q ss_pred ceeEeecCccccCc
Q 024415 3 DLYALDFDGVLCDS 16 (268)
Q Consensus 3 ~~viFD~DGTL~d~ 16 (268)
++|+||+||||++.
T Consensus 493 rLi~~D~DGTL~~~ 506 (726)
T PRK14501 493 RLLLLDYDGTLVPF 506 (726)
T ss_pred eEEEEecCccccCC
Confidence 58999999999974
No 264
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=67.30 E-value=31 Score=25.81 Aligned_cols=81 Identities=16% Similarity=0.146 Sum_probs=55.2
Q ss_pred cCCCCCChHHHH---HcCCCeEEEEcCCC-HHHHHHHHHHhcCCCCCCCeEE--------ecCCCChHHHHHHHHhcCCC
Q 024415 137 ANRFYPGIPDAL---KFASSRIYIVTTKQ-SRFADALLRELAGVTIPPDRIY--------GLGTGPKVEVLKQLQKKPEL 204 (268)
Q Consensus 137 ~~~~~pg~~e~L---~~~g~~i~ivTn~~-~~~~~~~l~~~~gl~~~f~~i~--------~~~~~pk~~~~~~~~~~~~~ 204 (268)
....|++....| +.+|+.++++|+.. .+.+.+.|+. +.+..-+-.-. ...++.+...+..+-...+.
T Consensus 42 e~~fY~Di~rIL~dLk~~GVtl~~ASRt~ap~iA~q~L~~-fkvk~~Gvlkps~e~ft~~~~g~gsklghfke~~n~s~~ 120 (144)
T KOG4549|consen 42 EMIFYDDIRRILVDLKKLGVTLIHASRTMAPQIASQGLET-FKVKQTGVLKPSLEEFTFEAVGDGSKLGHFKEFTNNSNS 120 (144)
T ss_pred eeeeccchhHHHHHHHhcCcEEEEecCCCCHHHHHHHHHH-hccCcccccchhhhcCceeeecCcccchhHHHHhhccCc
Confidence 445777777777 89999999999764 4456777887 55542221111 11124677778888888888
Q ss_pred CCCcEEEEecCccc
Q 024415 205 QGMTLHFVEDRLAT 218 (268)
Q Consensus 205 ~~~~~l~IGDs~~D 218 (268)
...+..+..|..++
T Consensus 121 ~~k~~~~fdDesrn 134 (144)
T KOG4549|consen 121 IEKNKQVFDDESRN 134 (144)
T ss_pred chhceeeecccccC
Confidence 87788888887554
No 265
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=65.40 E-value=9.8 Score=31.06 Aligned_cols=30 Identities=20% Similarity=0.174 Sum_probs=26.0
Q ss_pred HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCC
Q 024415 149 KFASSRIYIVTTKQSRFADALLRELAGVTIP 179 (268)
Q Consensus 149 ~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~ 179 (268)
+++|++++++|+++...+...++. +++..+
T Consensus 33 ~~~G~~~~iaTGR~~~~~~~~~~~-l~~~~~ 62 (230)
T PRK01158 33 EKLGIPVILATGNVLCFARAAAKL-IGTSGP 62 (230)
T ss_pred HHCCCEEEEEcCCchHHHHHHHHH-hCCCCc
Confidence 689999999999999998888888 787643
No 266
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=65.22 E-value=51 Score=25.20 Aligned_cols=98 Identities=16% Similarity=0.133 Sum_probs=58.6
Q ss_pred CCCCChHHHHH--cCCCeEEEEcCC--CHHHHHH----HHHHhcCCCCCCCeEEecCCCChHHHHHHHHhcCCCCCCcEE
Q 024415 139 RFYPGIPDALK--FASSRIYIVTTK--QSRFADA----LLRELAGVTIPPDRIYGLGTGPKVEVLKQLQKKPELQGMTLH 210 (268)
Q Consensus 139 ~~~pg~~e~L~--~~g~~i~ivTn~--~~~~~~~----~l~~~~gl~~~f~~i~~~~~~pk~~~~~~~~~~~~~~~~~~l 210 (268)
...|+++++++ -..|.++|+|.. ....+.. ..+. +.+-.+-..|+|+.-+ -+.++ +
T Consensus 68 ~V~p~aq~v~keLt~~y~vYivtaamdhp~s~~dK~eWl~E~-FPFi~~qn~vfCgnKn-------------ivkaD--i 131 (180)
T COG4502 68 GVQPFAQTVLKELTSIYNVYIVTAAMDHPKSCEDKGEWLKEK-FPFISYQNIVFCGNKN-------------IVKAD--I 131 (180)
T ss_pred CccccHHHHHHHHHhhheEEEEEeccCCchhHHHHHHHHHHH-CCCCChhhEEEecCCC-------------eEEee--E
Confidence 46789999994 556899999975 3333333 3444 5665555666665431 12223 8
Q ss_pred EEecCccchhcccccccccCCeEEEeecCCCCHHHHHhhcCCCCEEEcCHhHHHhh
Q 024415 211 FVEDRLATLKNVIKEPELDGWNLYLGDWGYNTQKEREEAASIPRIQLLQLSDFSRK 266 (268)
Q Consensus 211 ~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~~~~p~~~~~~~~~l~~~ 266 (268)
+|+|.+..++. -+. ..|+.+..+|.. +-+ -+.+.+.+|..+.
T Consensus 132 lIDDnp~nLE~----F~G---~kIlFdA~HN~n-enR------F~Rv~~W~e~eq~ 173 (180)
T COG4502 132 LIDDNPLNLEN----FKG---NKILFDAHHNKN-ENR------FVRVRDWYEAEQA 173 (180)
T ss_pred EecCCchhhhh----ccC---ceEEEecccccC-ccc------eeeeccHHHHHHH
Confidence 99999999998 443 344555443322 211 1566778877754
No 267
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=64.92 E-value=3.6 Score=32.06 Aligned_cols=15 Identities=33% Similarity=0.445 Sum_probs=13.4
Q ss_pred ceeEeecCccccCch
Q 024415 3 DLYALDFDGVLCDSC 17 (268)
Q Consensus 3 ~~viFD~DGTL~d~~ 17 (268)
+.+++|+|+||+.+.
T Consensus 2 ~~lvlDLDeTLi~~~ 16 (162)
T TIGR02251 2 KTLVLDLDETLVHST 16 (162)
T ss_pred cEEEEcCCCCcCCCC
Confidence 579999999999876
No 268
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=64.59 E-value=3.4 Score=36.75 Aligned_cols=15 Identities=33% Similarity=0.696 Sum_probs=13.8
Q ss_pred ceeEeecCccccCch
Q 024415 3 DLYALDFDGVLCDSC 17 (268)
Q Consensus 3 ~~viFD~DGTL~d~~ 17 (268)
|.+.||+||||+|+.
T Consensus 76 K~i~FD~dgtlI~t~ 90 (422)
T KOG2134|consen 76 KIIMFDYDGTLIDTK 90 (422)
T ss_pred ceEEEecCCceeecC
Confidence 579999999999988
No 269
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=62.59 E-value=14 Score=31.07 Aligned_cols=29 Identities=14% Similarity=0.196 Sum_probs=25.7
Q ss_pred HcCCCeEEEEcCCCHHHHHHHHHHhcCCCC
Q 024415 149 KFASSRIYIVTTKQSRFADALLRELAGVTI 178 (268)
Q Consensus 149 ~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~ 178 (268)
+++|++++++|+++...+...++. +++..
T Consensus 33 ~~~G~~~~iaTGR~~~~~~~~~~~-l~~~~ 61 (272)
T PRK10530 33 REAGYKVIIVTGRHHVAIHPFYQA-LALDT 61 (272)
T ss_pred HHCCCEEEEEcCCChHHHHHHHHh-cCCCC
Confidence 689999999999999999889998 78764
No 270
>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]
Probab=62.46 E-value=13 Score=30.18 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=16.6
Q ss_pred ChHHHHHHHHhcCCCCCCcEEEEecCc
Q 024415 190 PKVEVLKQLQKKPELQGMTLHFVEDRL 216 (268)
Q Consensus 190 pk~~~~~~~~~~~~~~~~~~l~IGDs~ 216 (268)
.|...++.+... +. +++-|+||..
T Consensus 193 DKtyCLqhle~d-gf--~~IhFFGDkT 216 (252)
T KOG3189|consen 193 DKTYCLQHLEKD-GF--DTIHFFGDKT 216 (252)
T ss_pred chhHHHHHhhhc-CC--ceEEEecccc
Confidence 457777777765 33 4678999974
No 271
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=62.43 E-value=21 Score=31.16 Aligned_cols=99 Identities=14% Similarity=0.080 Sum_probs=56.0
Q ss_pred ccCCCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHh--cCCCCCCCeEEecCC---------C-C--h---HHHH
Q 024415 136 GANRFYPGIPDAL---KFASSRIYIVTTKQSRFADALLREL--AGVTIPPDRIYGLGT---------G-P--K---VEVL 195 (268)
Q Consensus 136 ~~~~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~--~gl~~~f~~i~~~~~---------~-p--k---~~~~ 195 (268)
++.-++|.+.+++ +++|..+.++||+..-. ..+..+ .+. +...++-+. + + - .+.+
T Consensus 81 GEPLL~pdl~eiv~~~~~~g~~v~l~TNG~ll~--~~~~~l~~~~~---~~i~VSLDG~~e~hd~~~~~~g~f~~~l~~I 155 (318)
T TIGR03470 81 GEPLLHPEIDEIVRGLVARKKFVYLCTNALLLE--KKLDKFEPSPY---LTFSVHLDGLREHHDASVCREGVFDRAVEAI 155 (318)
T ss_pred ccccccccHHHHHHHHHHcCCeEEEecCceehH--HHHHHHHhCCC---cEEEEEEecCchhhchhhcCCCcHHHHHHHH
Confidence 3445778888888 57889999999986532 223321 232 222233221 1 1 0 3344
Q ss_pred HHHHhcCCCC--CCcEEEEecCccchhcccccccccCCeEEEeecCC
Q 024415 196 KQLQKKPELQ--GMTLHFVEDRLATLKNVIKEPELDGWNLYLGDWGY 240 (268)
Q Consensus 196 ~~~~~~~~~~--~~~~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~ 240 (268)
+.+.+. +.. -.-+++-+++..++......++..|+..+.+..++
T Consensus 156 ~~l~~~-G~~v~v~~tv~~~~n~~ei~~~~~~~~~lGv~~i~i~p~~ 201 (318)
T TIGR03470 156 REAKAR-GFRVTTNTTLFNDTDPEEVAEFFDYLTDLGVDGMTISPGY 201 (318)
T ss_pred HHHHHC-CCcEEEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCc
Confidence 544433 332 11122336777777776666888999888887665
No 272
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=61.98 E-value=3.6 Score=34.10 Aligned_cols=32 Identities=9% Similarity=0.104 Sum_probs=23.0
Q ss_pred ChHHHHHHHHhcCCCC---CCcEEEEecCccchhc
Q 024415 190 PKVEVLKQLQKKPELQ---GMTLHFVEDRLATLKN 221 (268)
Q Consensus 190 pk~~~~~~~~~~~~~~---~~~~l~IGDs~~Di~~ 221 (268)
.|..+++.+.+..+.. +.-++|+||...|-.+
T Consensus 165 ~KG~av~~ll~~~~~~~~~~~~~l~~GDD~tDE~~ 199 (235)
T PF02358_consen 165 NKGSAVRRLLEELPFAGPKPDFVLYIGDDRTDEDA 199 (235)
T ss_dssp -HHHHHHHHHTTS---------EEEEESSHHHHHH
T ss_pred ChHHHHHHHHHhcCccccccceeEEecCCCCCHHH
Confidence 6899999999998875 7788999999988777
No 273
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=61.94 E-value=16 Score=34.55 Aligned_cols=78 Identities=14% Similarity=0.036 Sum_probs=46.8
Q ss_pred HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecCCC-ChHHHHHHHHhcCCCCCCcEEEEecCccchhccccccc
Q 024415 149 KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGTG-PKVEVLKQLQKKPELQGMTLHFVEDRLATLKNVIKEPE 227 (268)
Q Consensus 149 ~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~~~-pk~~~~~~~~~~~~~~~~~~l~IGDs~~Di~~~~~~A~ 227 (268)
+..+-+++||+-......-..+..++++. ++. ++-.+. --...++.+.. .|+. ++|||+.. ... |+
T Consensus 104 ~~~~~~iavv~~~~~~~~~~~~~~~l~~~--i~~-~~~~~~~e~~~~v~~lk~-~G~~----~vvG~~~~-~~~----A~ 170 (538)
T PRK15424 104 RKLTSSIGVVTYQETIPALVAFQKTFNLR--IEQ-RSYVTEEDARGQINELKA-NGIE----AVVGAGLI-TDL----AE 170 (538)
T ss_pred HhcCCcEEEEecCcccHHHHHHHHHhCCc--eEE-EEecCHHHHHHHHHHHHH-CCCC----EEEcCchH-HHH----HH
Confidence 45566888888655444334444435553 222 222221 12344455544 5888 99999865 567 89
Q ss_pred ccCCeEEEeecC
Q 024415 228 LDGWNLYLGDWG 239 (268)
Q Consensus 228 ~aG~~~v~v~~g 239 (268)
.+|+..+.+.++
T Consensus 171 ~~g~~g~~~~s~ 182 (538)
T PRK15424 171 EAGMTGIFIYSA 182 (538)
T ss_pred HhCCceEEecCH
Confidence 999999988754
No 274
>KOG0203 consensus Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism]
Probab=61.81 E-value=11 Score=37.01 Aligned_cols=37 Identities=24% Similarity=0.400 Sum_probs=28.9
Q ss_pred CCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCC
Q 024415 139 RFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGV 176 (268)
Q Consensus 139 ~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl 176 (268)
|+++.+.+.+ ++.|++++.+|+...-......+. .|+
T Consensus 590 PPR~~vP~Av~~CrsAGIkvimVTgdhpiTAkAiA~~-vgI 629 (1019)
T KOG0203|consen 590 PPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKS-VGI 629 (1019)
T ss_pred CCcccCchhhhhhhhhCceEEEEecCccchhhhhhhh-eee
Confidence 5667777777 799999999999877777777776 563
No 275
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=61.37 E-value=13 Score=32.18 Aligned_cols=31 Identities=16% Similarity=0.199 Sum_probs=27.3
Q ss_pred HHcCCCeEEEEcCCCHHHHHHHHHHhcCCCCC
Q 024415 148 LKFASSRIYIVTTKQSRFADALLRELAGVTIP 179 (268)
Q Consensus 148 L~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~ 179 (268)
|+++|++++++|++....+....+. +++..+
T Consensus 30 Lk~~GI~vVlaTGRt~~ev~~l~~~-Lgl~~p 60 (302)
T PRK12702 30 LERRSIPLVLYSLRTRAQLEHLCRQ-LRLEHP 60 (302)
T ss_pred HHHCCCEEEEEcCCCHHHHHHHHHH-hCCCCe
Confidence 3789999999999999999999999 788654
No 276
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=60.87 E-value=56 Score=28.66 Aligned_cols=29 Identities=21% Similarity=0.452 Sum_probs=23.1
Q ss_pred ccCCCCCChHHHH---HcCCCeEEEEcCCCHH
Q 024415 136 GANRFYPGIPDAL---KFASSRIYIVTTKQSR 164 (268)
Q Consensus 136 ~~~~~~pg~~e~L---~~~g~~i~ivTn~~~~ 164 (268)
++..++|.+.+++ +++|+.+.|.||+...
T Consensus 139 GEPlL~p~l~eli~~~k~~Gi~~~L~TNG~~~ 170 (322)
T PRK13762 139 GEPTLYPYLPELIEEFHKRGFTTFLVTNGTRP 170 (322)
T ss_pred ccccchhhHHHHHHHHHHcCCCEEEECCCCCH
Confidence 3445778888888 6889999999999764
No 277
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=60.14 E-value=13 Score=31.33 Aligned_cols=30 Identities=7% Similarity=-0.006 Sum_probs=26.5
Q ss_pred HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCC
Q 024415 149 KFASSRIYIVTTKQSRFADALLRELAGVTIP 179 (268)
Q Consensus 149 ~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~ 179 (268)
+++|++++++|+++...+...++. +++..+
T Consensus 32 ~~~G~~~~iaTGR~~~~~~~~~~~-l~~~~~ 61 (272)
T PRK15126 32 RERDITLTFATGRHVLEMQHILGA-LSLDAY 61 (272)
T ss_pred HHCCCEEEEECCCCHHHHHHHHHH-cCCCCc
Confidence 689999999999999999999998 788644
No 278
>PRK06769 hypothetical protein; Validated
Probab=59.44 E-value=5.2 Score=31.49 Aligned_cols=13 Identities=23% Similarity=0.317 Sum_probs=11.6
Q ss_pred CceeEeecCcccc
Q 024415 2 ADLYALDFDGVLC 14 (268)
Q Consensus 2 ~~~viFD~DGTL~ 14 (268)
+++++||.||||.
T Consensus 4 ~~~~~~d~d~~~~ 16 (173)
T PRK06769 4 IQAIFIDRDGTIG 16 (173)
T ss_pred CcEEEEeCCCccc
Confidence 4789999999995
No 279
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=58.39 E-value=85 Score=26.27 Aligned_cols=82 Identities=7% Similarity=0.041 Sum_probs=50.4
Q ss_pred cCCCeEEEEcCCCH---HHHHHHHHHhc-CCCCCCCeEEecCCC-ChHHHHHHHHhcCCCCCCcEEEEecCc--cchhcc
Q 024415 150 FASSRIYIVTTKQS---RFADALLRELA-GVTIPPDRIYGLGTG-PKVEVLKQLQKKPELQGMTLHFVEDRL--ATLKNV 222 (268)
Q Consensus 150 ~~g~~i~ivTn~~~---~~~~~~l~~~~-gl~~~f~~i~~~~~~-pk~~~~~~~~~~~~~~~~~~l~IGDs~--~Di~~~ 222 (268)
+.++.+-+++++.. +.+......++ .+..-|-.+++.... |-|...+.+....+++ |+.|||.+ .+-..
T Consensus 29 RedI~vrv~gsGaKm~pe~~~~~~~~~~~~~~pDf~i~isPN~a~PGP~~ARE~l~~~~iP---~IvI~D~p~~K~~d~- 104 (277)
T PRK00994 29 REDIDVRVVGSGAKMGPEEVEEVVKKMLEEWKPDFVIVISPNPAAPGPKKAREILKAAGIP---CIVIGDAPGKKVKDA- 104 (277)
T ss_pred ccCceEEEeccCCCCCHHHHHHHHHHHHHhhCCCEEEEECCCCCCCCchHHHHHHHhcCCC---EEEEcCCCccchHHH-
Confidence 66899999998743 33443333311 233333333333333 7788888888877763 59999996 35566
Q ss_pred cccccccCCeEEEeec
Q 024415 223 IKEPELDGWNLYLGDW 238 (268)
Q Consensus 223 ~~~A~~aG~~~v~v~~ 238 (268)
-+..|+-.|.+..
T Consensus 105 ---l~~~g~GYIivk~ 117 (277)
T PRK00994 105 ---MEEQGLGYIIVKA 117 (277)
T ss_pred ---HHhcCCcEEEEec
Confidence 6778887776653
No 280
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=57.82 E-value=3.8 Score=32.41 Aligned_cols=78 Identities=17% Similarity=0.101 Sum_probs=42.9
Q ss_pred HcCCCeEEEEcCCCHHH-HHHHHHHhcCCCCCCCeEEecCCCCh-HHHHHHHHhcCCCCCCcEEEEecCccchhcccccc
Q 024415 149 KFASSRIYIVTTKQSRF-ADALLRELAGVTIPPDRIYGLGTGPK-VEVLKQLQKKPELQGMTLHFVEDRLATLKNVIKEP 226 (268)
Q Consensus 149 ~~~g~~i~ivTn~~~~~-~~~~l~~~~gl~~~f~~i~~~~~~pk-~~~~~~~~~~~~~~~~~~l~IGDs~~Di~~~~~~A 226 (268)
+..+-++++++...... ....-+. +|+. +. ++.-.+..+ ...++++. ..|.. ++||++.. ... |
T Consensus 74 ~~~~~~Iavv~~~~~~~~~~~~~~l-l~~~--i~-~~~~~~~~e~~~~i~~~~-~~G~~----viVGg~~~-~~~----A 139 (176)
T PF06506_consen 74 KKYGPKIAVVGYPNIIPGLESIEEL-LGVD--IK-IYPYDSEEEIEAAIKQAK-AEGVD----VIVGGGVV-CRL----A 139 (176)
T ss_dssp CCCTSEEEEEEESS-SCCHHHHHHH-HT-E--EE-EEEESSHHHHHHHHHHHH-HTT------EEEESHHH-HHH----H
T ss_pred HhcCCcEEEEecccccHHHHHHHHH-hCCc--eE-EEEECCHHHHHHHHHHHH-HcCCc----EEECCHHH-HHH----H
Confidence 46677899998655443 3333333 5652 11 112222111 33444444 34788 99999964 567 8
Q ss_pred cccCCeEEEeecCC
Q 024415 227 ELDGWNLYLGDWGY 240 (268)
Q Consensus 227 ~~aG~~~v~v~~g~ 240 (268)
+..|++++.+.+|.
T Consensus 140 ~~~gl~~v~i~sg~ 153 (176)
T PF06506_consen 140 RKLGLPGVLIESGE 153 (176)
T ss_dssp HHTTSEEEESS--H
T ss_pred HHcCCcEEEEEecH
Confidence 99999999998764
No 281
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=56.47 E-value=13 Score=30.68 Aligned_cols=47 Identities=17% Similarity=0.119 Sum_probs=21.3
Q ss_pred HHHHHHHHhcCCC-CCCCeE-EecCCCChHHHHHHHHhc--CCCCCCcEEEEecCc
Q 024415 165 FADALLRELAGVT-IPPDRI-YGLGTGPKVEVLKQLQKK--PELQGMTLHFVEDRL 216 (268)
Q Consensus 165 ~~~~~l~~~~gl~-~~f~~i-~~~~~~pk~~~~~~~~~~--~~~~~~~~l~IGDs~ 216 (268)
.++.+++. .+.. ...+.+ +.+++..+..+|+.+... .++. +.||...
T Consensus 169 av~~ll~~-~~~~~~~~~~~l~~GDD~tDE~~f~~~~~~~~~~~~----i~V~~~~ 219 (235)
T PF02358_consen 169 AVRRLLEE-LPFAGPKPDFVLYIGDDRTDEDAFRALRELEEGGFG----IKVGSVS 219 (235)
T ss_dssp HHHHHHTT-S---------EEEEESSHHHHHHHHTTTTS----EE----EEES---
T ss_pred HHHHHHHh-cCccccccceeEEecCCCCCHHHHHHHHhcccCCCC----eEEEeec
Confidence 45556665 4442 112333 344444688888887765 3455 7777654
No 282
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=55.83 E-value=29 Score=25.85 Aligned_cols=27 Identities=19% Similarity=0.138 Sum_probs=21.4
Q ss_pred CCCCChHHHH---HcCCCeEEEEcCCCHHH
Q 024415 139 RFYPGIPDAL---KFASSRIYIVTTKQSRF 165 (268)
Q Consensus 139 ~~~pg~~e~L---~~~g~~i~ivTn~~~~~ 165 (268)
.+.+++.+.| +++|+.++++|+.+...
T Consensus 24 ~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~ 53 (126)
T TIGR01689 24 APILAVIEKLRHYKALGFEIVISSSRNMRT 53 (126)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEECCCCchh
Confidence 3667788888 48899999999987654
No 283
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=55.09 E-value=18 Score=30.39 Aligned_cols=29 Identities=14% Similarity=0.146 Sum_probs=26.6
Q ss_pred HcCCCeEEEEcCCCHHHHHHHHHHhcCCCC
Q 024415 149 KFASSRIYIVTTKQSRFADALLRELAGVTI 178 (268)
Q Consensus 149 ~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~ 178 (268)
+++|++++++|+++...+...++. +++..
T Consensus 33 ~~~g~~v~iaTGR~~~~~~~~~~~-l~~~~ 61 (264)
T COG0561 33 REKGVKVVLATGRPLPDVLSILEE-LGLDG 61 (264)
T ss_pred HHCCCEEEEECCCChHHHHHHHHH-cCCCc
Confidence 699999999999999999999999 78865
No 284
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=54.98 E-value=49 Score=33.91 Aligned_cols=70 Identities=14% Similarity=0.136 Sum_probs=50.2
Q ss_pred HcCCCeEEEE-cCC----CHHHHHHHHHHhcCCCCCCCeEEecC-C--------CChHHHHHHHHhcCCCCCCcE-EEEe
Q 024415 149 KFASSRIYIV-TTK----QSRFADALLRELAGVTIPPDRIYGLG-T--------GPKVEVLKQLQKKPELQGMTL-HFVE 213 (268)
Q Consensus 149 ~~~g~~i~iv-Tn~----~~~~~~~~l~~~~gl~~~f~~i~~~~-~--------~pk~~~~~~~~~~~~~~~~~~-l~IG 213 (268)
.+..+++... .+. ....+++.|.. .|+... .|++.. . ..|.++++++..+.+++.+++ +|+|
T Consensus 904 ~q~~~k~SY~v~d~~~~~~v~elr~~Lr~-~gLr~~--~iys~~~~~LDVlP~~ASKgqAlRyL~~rwgi~l~~v~VfaG 980 (1050)
T TIGR02468 904 SSTDHCYAFKVKDPSKVPPVKELRKLLRI-QGLRCH--AVYCRNGTRLNVIPLLASRSQALRYLFVRWGIELANMAVFVG 980 (1050)
T ss_pred hCCCceEEEEecCcccCccHHHHHHHHHh-CCCceE--EEeecCCcEeeeeeCCCCHHHHHHHHHHHcCCChHHeEEEec
Confidence 3555777665 222 34577778887 677533 455554 1 168999999999999999999 6699
Q ss_pred cCcc-chhc
Q 024415 214 DRLA-TLKN 221 (268)
Q Consensus 214 Ds~~-Di~~ 221 (268)
||-+ |.+.
T Consensus 981 dSGntD~e~ 989 (1050)
T TIGR02468 981 ESGDTDYEG 989 (1050)
T ss_pred cCCCCCHHH
Confidence 9987 9665
No 285
>PTZ00445 p36-lilke protein; Provisional
Probab=54.80 E-value=5 Score=32.81 Aligned_cols=14 Identities=29% Similarity=0.354 Sum_probs=12.7
Q ss_pred CceeEeecCccccC
Q 024415 2 ADLYALDFDGVLCD 15 (268)
Q Consensus 2 ~~~viFD~DGTL~d 15 (268)
+++|++|||.||+.
T Consensus 43 Ik~Va~D~DnTlI~ 56 (219)
T PTZ00445 43 IKVIASDFDLTMIT 56 (219)
T ss_pred CeEEEecchhhhhh
Confidence 47899999999997
No 286
>PLN02382 probable sucrose-phosphatase
Probab=53.52 E-value=6.9 Score=35.59 Aligned_cols=48 Identities=17% Similarity=0.202 Sum_probs=29.0
Q ss_pred HHHHHHHHhc---CCCCCCCeEEecCCCChHHHHHHHHhcCCCCCCcEEEEecCccchhc
Q 024415 165 FADALLRELA---GVTIPPDRIYGLGTGPKVEVLKQLQKKPELQGMTLHFVEDRLATLKN 221 (268)
Q Consensus 165 ~~~~~l~~~~---gl~~~f~~i~~~~~~pk~~~~~~~~~~~~~~~~~~l~IGDs~~Di~~ 221 (268)
.++.+++. + |+. .-+.++.+|...+.++++.... .. +.+|+....+..
T Consensus 179 Al~~L~~~-~~~~gi~-~~~~iafGDs~NDleMl~~ag~---~g----vam~NA~~elk~ 229 (413)
T PLN02382 179 ALAYLLKK-LKAEGKA-PVNTLVCGDSGNDAELFSVPDV---YG----VMVSNAQEELLQ 229 (413)
T ss_pred HHHHHHHH-hhhcCCC-hhcEEEEeCCHHHHHHHhcCCC---CE----EEEcCCcHHHHH
Confidence 34445555 5 553 3355666777677887766331 34 778888777764
No 287
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=53.20 E-value=7.8 Score=30.36 Aligned_cols=15 Identities=27% Similarity=0.091 Sum_probs=12.8
Q ss_pred ceeEeecCccccCch
Q 024415 3 DLYALDFDGVLCDSC 17 (268)
Q Consensus 3 ~~viFD~DGTL~d~~ 17 (268)
++|++|+||||+...
T Consensus 26 ~~vv~D~Dgtl~~~~ 40 (170)
T TIGR01668 26 KGVVLDKDNTLVYPD 40 (170)
T ss_pred CEEEEecCCccccCC
Confidence 689999999998644
No 288
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=51.54 E-value=78 Score=27.79 Aligned_cols=84 Identities=18% Similarity=0.149 Sum_probs=50.3
Q ss_pred CCCCCChHHHHH---cC----CCeEEEEcCCCHH---HHHHHHHHhcCCCCCCCeEEecCCCChHHHHHHHHhcCCCCCC
Q 024415 138 NRFYPGIPDALK---FA----SSRIYIVTTKQSR---FADALLRELAGVTIPPDRIYGLGTGPKVEVLKQLQKKPELQGM 207 (268)
Q Consensus 138 ~~~~pg~~e~L~---~~----g~~i~ivTn~~~~---~~~~~l~~~~gl~~~f~~i~~~~~~pk~~~~~~~~~~~~~~~~ 207 (268)
.++.||+.+.|+ .+ .++.+++||+... .-.+.+...+|++-.-|.|+-+.+ +++.+- + ..-+
T Consensus 50 ~~~i~~~~~Alr~L~~~~g~lkIP~vfLTNGGg~~E~~rA~~lS~~Lgv~Vs~dqviqSHs-----P~r~l~-~--~~~k 121 (389)
T KOG1618|consen 50 HRPIPGALKALRRLVDNQGQLKIPFVFLTNGGGILESSRAQELSALLGVEVSADQVIQSHS-----PFRLLV-E--YHYK 121 (389)
T ss_pred CCCCcchHHHHHHHHhcCCCeeccEEEEeCCCCcchhhHHHHHHHhhCCccCHHHHHhhcC-----hHHHHh-h--hhhc
Confidence 467899999882 33 6899999997432 223344443677655555554444 334443 2 2334
Q ss_pred cEEEEecCccchhcccccccccCCeEE
Q 024415 208 TLHFVEDRLATLKNVIKEPELDGWNLY 234 (268)
Q Consensus 208 ~~l~IGDs~~Di~~~~~~A~~aG~~~v 234 (268)
.++.+|+... -+. |+..|..-|
T Consensus 122 ~vLv~G~~~v-r~v----AegyGFk~V 143 (389)
T KOG1618|consen 122 RVLVVGQGSV-REV----AEGYGFKNV 143 (389)
T ss_pred eEEEecCCcH-HHH----hhccCccce
Confidence 6799996531 222 678888655
No 289
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=51.20 E-value=46 Score=27.38 Aligned_cols=85 Identities=18% Similarity=0.225 Sum_probs=57.9
Q ss_pred CCCCCChHHHH----HcCCCeEEEEcCCCHH-----HHHHHHHHhcCCCCCCCeEEecCCC---ChHHHHHHHHhcCCCC
Q 024415 138 NRFYPGIPDAL----KFASSRIYIVTTKQSR-----FADALLRELAGVTIPPDRIYGLGTG---PKVEVLKQLQKKPELQ 205 (268)
Q Consensus 138 ~~~~pg~~e~L----~~~g~~i~ivTn~~~~-----~~~~~l~~~~gl~~~f~~i~~~~~~---pk~~~~~~~~~~~~~~ 205 (268)
..++|++.-.| ++.|.+-.|+...... .+...++. +|+.-.|..++|+-.. |....|-...-+|.+.
T Consensus 58 y~lHPDl~~~l~~~~~e~g~kavIvp~~~~~~g~~~~lk~~~e~-~gi~~~~P~~~CsL~~~~~p~i~~F~~~fGkP~~e 136 (217)
T PF02593_consen 58 YGLHPDLTYELPEIAKEAGVKAVIVPSESPKPGLRRQLKKQLEE-FGIEVEFPKPFCSLEENGNPQIDEFAEYFGKPKVE 136 (217)
T ss_pred eccCchhHHHHHHHHHHcCCCEEEEecCCCccchHHHHHHHHHh-cCceeecCccccccCCCCChhHHHHHHHhCCceEE
Confidence 36788877544 4689998888877666 78888888 7988888888887543 4433332223355555
Q ss_pred CCcEEEEecC-ccchhcccccccccCC
Q 024415 206 GMTLHFVEDR-LATLKNVIKEPELDGW 231 (268)
Q Consensus 206 ~~~~l~IGDs-~~Di~~~~~~A~~aG~ 231 (268)
+.|.|. ..|+.- -+.+-|
T Consensus 137 ----i~v~~~~I~~V~V----lR~aPC 155 (217)
T PF02593_consen 137 ----IEVENGKIKDVKV----LRSAPC 155 (217)
T ss_pred ----EEecCCcEEEEEE----EecCCC
Confidence 777766 578777 666665
No 290
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=51.02 E-value=8.5 Score=29.84 Aligned_cols=14 Identities=29% Similarity=0.404 Sum_probs=12.9
Q ss_pred eeEeecCccccCch
Q 024415 4 LYALDFDGVLCDSC 17 (268)
Q Consensus 4 ~viFD~DGTL~d~~ 17 (268)
.+++|+|.||+.+.
T Consensus 8 ~LVLDLDeTLihs~ 21 (156)
T TIGR02250 8 HLVLDLDQTLIHTT 21 (156)
T ss_pred EEEEeCCCCccccc
Confidence 68999999999877
No 291
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=48.17 E-value=7.4 Score=25.09 Aligned_cols=23 Identities=35% Similarity=0.398 Sum_probs=14.8
Q ss_pred HHHHHhcCCCCCCcEEEEecCccchhc
Q 024415 195 LKQLQKKPELQGMTLHFVEDRLATLKN 221 (268)
Q Consensus 195 ~~~~~~~~~~~~~~~l~IGDs~~Di~~ 221 (268)
+.++.+++|+= +|+||...|++.
T Consensus 7 VqQLLK~fG~~----IY~gdr~~Diel 29 (62)
T PF06014_consen 7 VQQLLKKFGII----IYVGDRLWDIEL 29 (62)
T ss_dssp HHHHHHTTS---------S-HHHHHHH
T ss_pred HHHHHHHCCEE----EEeCChHHHHHH
Confidence 47888999998 999999999987
No 292
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=47.89 E-value=19 Score=31.83 Aligned_cols=25 Identities=16% Similarity=0.197 Sum_probs=17.6
Q ss_pred CceeEeecCccccCchh-hhHHHHHH
Q 024415 2 ADLYALDFDGVLCDSCG-ESSLSAVK 26 (268)
Q Consensus 2 ~~~viFD~DGTL~d~~~-~~~~~a~~ 26 (268)
+++|-||+|.||+.... .....++.
T Consensus 12 i~~~GFDmDyTLa~Y~~~~~e~L~y~ 37 (343)
T TIGR02244 12 IQVFGFDMDYTLAQYKSPELEALIYD 37 (343)
T ss_pred CCEEEECccccccccChHHHHHHHHH
Confidence 46899999999997764 33333443
No 293
>KOG3217 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=46.00 E-value=41 Score=25.75 Aligned_cols=71 Identities=11% Similarity=0.091 Sum_probs=45.4
Q ss_pred hccCCCCCChHHHHHcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecCCCChHHHHHHHHhcCCCCCCcEEEEec
Q 024415 135 IGANRFYPGIPDALKFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGTGPKVEVLKQLQKKPELQGMTLHFVED 214 (268)
Q Consensus 135 ~~~~~~~pg~~e~L~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~~~pk~~~~~~~~~~~~~~~~~~l~IGD 214 (268)
.....+.|-+...||++|+++ ++.. +.+.. -.+ ..||.|++-|+-...++.+.....+.-+..++++.|+
T Consensus 51 h~G~~PD~R~~s~lK~hGI~~---~H~a-----Rqit~-~DF-~~FDYI~~MDesN~~dL~~~a~~~~~~~kakV~Llgs 120 (159)
T KOG3217|consen 51 HTGRSPDPRTLSILKKHGIKI---DHLA-----RQITT-SDF-REFDYILAMDESNLRDLLRKASNQPKGSKAKVLLLGS 120 (159)
T ss_pred ccCCCCChHHHHHHHHcCCcc---hhhc-----ccccH-hHh-hhcceeEEecHHHHHHHHHHhccCCCCcceEEEEeec
Confidence 445578888889999999983 2211 12222 122 4599999988744455555555666666777888776
Q ss_pred C
Q 024415 215 R 215 (268)
Q Consensus 215 s 215 (268)
=
T Consensus 121 y 121 (159)
T KOG3217|consen 121 Y 121 (159)
T ss_pred c
Confidence 4
No 294
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=45.71 E-value=35 Score=26.55 Aligned_cols=52 Identities=10% Similarity=-0.024 Sum_probs=36.8
Q ss_pred CCcEEEEecCcc--chhcccccccccCCeEEEeecCCCCHHHHHhhcCCCCEEE
Q 024415 206 GMTLHFVEDRLA--TLKNVIKEPELDGWNLYLGDWGYNTQKEREEAASIPRIQL 257 (268)
Q Consensus 206 ~~~~l~IGDs~~--Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~~~~p~~~~ 257 (268)
|.-+++|=|+.+ |+..+-+.++++|+..+.|.-|....++|......|++++
T Consensus 107 ~kv~vviTdG~s~d~~~~~a~~lr~~gv~i~~vG~~~~~~~eL~~ias~p~~vf 160 (165)
T cd01481 107 PQFLVLITGGKSQDDVERPAVALKRAGIVPFAIGARNADLAELQQIAFDPSFVF 160 (165)
T ss_pred CeEEEEEeCCCCcchHHHHHHHHHHCCcEEEEEeCCcCCHHHHHHHhCCCccEE
Confidence 455688888864 4543333368889998888877456778888888887654
No 295
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=45.43 E-value=10 Score=38.09 Aligned_cols=15 Identities=27% Similarity=0.519 Sum_probs=12.4
Q ss_pred ceeEeecCccccCch
Q 024415 3 DLYALDFDGVLCDSC 17 (268)
Q Consensus 3 ~~viFD~DGTL~d~~ 17 (268)
.+++||+||||++..
T Consensus 592 RLlfLDyDGTLap~~ 606 (934)
T PLN03064 592 RLLILGFNATLTEPV 606 (934)
T ss_pred eEEEEecCceeccCC
Confidence 478999999998643
No 296
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=40.06 E-value=1.2e+02 Score=21.64 Aligned_cols=30 Identities=7% Similarity=0.083 Sum_probs=21.3
Q ss_pred ChHHHHHHHHhcCCCCCCcEEEEecC-ccchhc
Q 024415 190 PKVEVLKQLQKKPELQGMTLHFVEDR-LATLKN 221 (268)
Q Consensus 190 pk~~~~~~~~~~~~~~~~~~l~IGDs-~~Di~~ 221 (268)
-|...++++...+... +.|.|||| ..|.+.
T Consensus 50 ~K~~~i~~i~~~fP~~--kfiLIGDsgq~Dpei 80 (100)
T PF09949_consen 50 HKRDNIERILRDFPER--KFILIGDSGQHDPEI 80 (100)
T ss_pred HHHHHHHHHHHHCCCC--cEEEEeeCCCcCHHH
Confidence 5677777777754443 56999999 568765
No 297
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=39.12 E-value=99 Score=25.88 Aligned_cols=41 Identities=20% Similarity=0.278 Sum_probs=32.4
Q ss_pred ccCCCCCC---hHHHHHcCCCeEEEEcCCCHHHHHHHHHHhcCCC
Q 024415 136 GANRFYPG---IPDALKFASSRIYIVTTKQSRFADALLRELAGVT 177 (268)
Q Consensus 136 ~~~~~~pg---~~e~L~~~g~~i~ivTn~~~~~~~~~l~~~~gl~ 177 (268)
.+.+..|| .+|.|+..|++.+|+|.++..-....++. .|+.
T Consensus 68 sPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~~K~~d~l~~-~g~G 111 (277)
T PRK00994 68 SPNPAAPGPKKAREILKAAGIPCIVIGDAPGKKVKDAMEE-QGLG 111 (277)
T ss_pred CCCCCCCCchHHHHHHHhcCCCEEEEcCCCccchHHHHHh-cCCc
Confidence 34444555 78888999999999999998887788887 6764
No 298
>PF10113 Fibrillarin_2: Fibrillarin-like archaeal protein; InterPro: IPR016760 Members of this protein family are HmdC, whose gene regularly occurs in the context of genes for HmdA (5,10-methenyltetrahydromethanopterin hydrogenase) and the radical SAM protein HmdB involved in biosynthesis of the HmdA cofactor. Bioinformatics suggests this protein, a homologue of eukaryotic fibrillarin, may be involved in biosynthesis of the guanylyl pyridinol cofactor in HmdA.
Probab=38.74 E-value=38 Score=30.67 Aligned_cols=53 Identities=23% Similarity=0.224 Sum_probs=38.3
Q ss_pred HHHHHHhcCCCCCCcEEEEecCccchhcccccccccCCeEEEeecC-CCCHHHH
Q 024415 194 VLKQLQKKPELQGMTLHFVEDRLATLKNVIKEPELDGWNLYLGDWG-YNTQKER 246 (268)
Q Consensus 194 ~~~~~~~~~~~~~~~~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g-~~~~~~~ 246 (268)
-+..+.++++---+-+++|||++.|+......|...|.+++.+--| ||..++.
T Consensus 210 ~Va~~Akk~gkGveaI~~vGDGyddLI~G~~a~id~~vDvfVvEGgPFN~a~dR 263 (505)
T PF10113_consen 210 EVAELAKKYGKGVEAIMHVGDGYDDLITGLKACIDMGVDVFVVEGGPFNRAKDR 263 (505)
T ss_pred HHHHHHHHhCCCceEEEEecCChHHHHHHHHHHHhcCCcEEEEeCCCcccchhH
Confidence 4466677888888899999999877765333377888888877655 6654443
No 299
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=36.86 E-value=1.7e+02 Score=23.85 Aligned_cols=50 Identities=10% Similarity=0.189 Sum_probs=29.5
Q ss_pred EEecCCCChHHHHHHHHhcCCCCCCcEEEEecCc--cchhcccccccccCCeEEEe
Q 024415 183 IYGLGTGPKVEVLKQLQKKPELQGMTLHFVEDRL--ATLKNVIKEPELDGWNLYLG 236 (268)
Q Consensus 183 i~~~~~~pk~~~~~~~~~~~~~~~~~~l~IGDs~--~Di~~~~~~A~~aG~~~v~v 236 (268)
|+.+..|...+.+-...+...++.+-+++|.|.. .-+.- |++.|++++.+
T Consensus 4 vl~Sg~Gsn~~al~~~~~~~~l~~~i~~visn~~~~~~~~~----A~~~gIp~~~~ 55 (207)
T PLN02331 4 VFVSGGGSNFRAIHDACLDGRVNGDVVVVVTNKPGCGGAEY----ARENGIPVLVY 55 (207)
T ss_pred EEEeCCChhHHHHHHHHHcCCCCeEEEEEEEeCCCChHHHH----HHHhCCCEEEe
Confidence 3445555666666555555555666667777753 23444 77777766654
No 300
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=36.62 E-value=1.5e+02 Score=24.10 Aligned_cols=60 Identities=13% Similarity=0.232 Sum_probs=38.7
Q ss_pred EEecCCCChHHHHHHHHhcCCCCCCcEEEEecCc--cchhcccccccccCCeEEEeecC-CCCHHHH
Q 024415 183 IYGLGTGPKVEVLKQLQKKPELQGMTLHFVEDRL--ATLKNVIKEPELDGWNLYLGDWG-YNTQKER 246 (268)
Q Consensus 183 i~~~~~~pk~~~~~~~~~~~~~~~~~~l~IGDs~--~Di~~~~~~A~~aG~~~v~v~~g-~~~~~~~ 246 (268)
|+.|.+|.+.+++-..+....++.+=+..|-|.. ..++- |+.+|++++.+... |.+++.+
T Consensus 5 VlaSG~GSNlqaiida~~~~~~~a~i~~Visd~~~A~~ler----A~~~gIpt~~~~~k~~~~r~~~ 67 (200)
T COG0299 5 VLASGNGSNLQAIIDAIKGGKLDAEIVAVISDKADAYALER----AAKAGIPTVVLDRKEFPSREAF 67 (200)
T ss_pred EEEeCCcccHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHH----HHHcCCCEEEeccccCCCHHHH
Confidence 4556667777766555554444445556777774 47788 99999988887765 4344434
No 301
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=36.09 E-value=21 Score=28.53 Aligned_cols=15 Identities=27% Similarity=0.195 Sum_probs=12.8
Q ss_pred ceeEeecCccccCch
Q 024415 3 DLYALDFDGVLCDSC 17 (268)
Q Consensus 3 ~~viFD~DGTL~d~~ 17 (268)
++++||-||||....
T Consensus 6 k~lflDRDGtin~d~ 20 (181)
T COG0241 6 KALFLDRDGTINIDK 20 (181)
T ss_pred cEEEEcCCCceecCC
Confidence 599999999997544
No 302
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=35.94 E-value=89 Score=25.47 Aligned_cols=62 Identities=18% Similarity=0.134 Sum_probs=41.2
Q ss_pred CCcEEEEecCcc--chhcccccccccCCeEEEeecCCCCHHHHHhhcCCCC----EEEcCHhHHHhhc
Q 024415 206 GMTLHFVEDRLA--TLKNVIKEPELDGWNLYLGDWGYNTQKEREEAASIPR----IQLLQLSDFSRKL 267 (268)
Q Consensus 206 ~~~~l~IGDs~~--Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~~~~~p~----~~~~~~~~l~~~l 267 (268)
+.-+|++-|+.. |+..+.+.++..|+..+.|.-|.....++......|. +.+.++.+|..+.
T Consensus 109 ~kvvillTDG~s~~~~~~~a~~lk~~gv~i~~VgvG~~~~~~L~~ias~~~~~~~f~~~~~~~l~~~~ 176 (224)
T cd01475 109 PRVGIVVTDGRPQDDVSEVAAKARALGIEMFAVGVGRADEEELREIASEPLADHVFYVEDFSTIEELT 176 (224)
T ss_pred CeEEEEEcCCCCcccHHHHHHHHHHCCcEEEEEeCCcCCHHHHHHHhCCCcHhcEEEeCCHHHHHHHh
Confidence 345688889843 4544334467889987777767556677877666553 4677788777654
No 303
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=35.43 E-value=22 Score=23.84 Aligned_cols=14 Identities=29% Similarity=0.427 Sum_probs=12.5
Q ss_pred eeEeecCccccCch
Q 024415 4 LYALDFDGVLCDSC 17 (268)
Q Consensus 4 ~viFD~DGTL~d~~ 17 (268)
.|+++-|||.+|++
T Consensus 40 ~l~L~eDGT~VddE 53 (74)
T smart00266 40 TLVLEEDGTIVDDE 53 (74)
T ss_pred EEEEecCCcEEccH
Confidence 47899999999988
No 304
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=35.25 E-value=2.2e+02 Score=23.46 Aligned_cols=87 Identities=14% Similarity=0.140 Sum_probs=48.5
Q ss_pred CCChHHHH----HcCCCeEEEEc--CCCH-H-HHH-HH-HHHhcCCCCCCCeEEecCC-CChHHHHHHHHhcCCCC--CC
Q 024415 141 YPGIPDAL----KFASSRIYIVT--TKQS-R-FAD-AL-LRELAGVTIPPDRIYGLGT-GPKVEVLKQLQKKPELQ--GM 207 (268)
Q Consensus 141 ~pg~~e~L----~~~g~~i~ivT--n~~~-~-~~~-~~-l~~~~gl~~~f~~i~~~~~-~pk~~~~~~~~~~~~~~--~~ 207 (268)
-||+.|+| ...+-++.+.+ ++.. . .+- .. .++ .|= .++|--+ ..+...+.+.+...+.+ ++
T Consensus 26 ep~~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~-TgG-----R~vCIvp~~~~~~~~~~~l~~~~~~~~vE 99 (218)
T PF07279_consen 26 EPGVAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQ-TGG-----RHVCIVPDEQSLSEYKKALGEAGLSDVVE 99 (218)
T ss_pred CCCHHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHh-cCC-----eEEEEcCChhhHHHHHHHHhhccccccce
Confidence 38999999 24445555544 3321 1 111 11 222 221 2233322 23455555666555654 34
Q ss_pred cEEEEecCccchhcccccccccCCeEEEeecCC
Q 024415 208 TLHFVEDRLATLKNVIKEPELDGWNLYLGDWGY 240 (268)
Q Consensus 208 ~~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~ 240 (268)
++|||...++.. .-.|++++.|+...
T Consensus 100 --fvvg~~~e~~~~-----~~~~iDF~vVDc~~ 125 (218)
T PF07279_consen 100 --FVVGEAPEEVMP-----GLKGIDFVVVDCKR 125 (218)
T ss_pred --EEecCCHHHHHh-----hccCCCEEEEeCCc
Confidence 678999888777 45789999998764
No 305
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=33.79 E-value=24 Score=24.05 Aligned_cols=14 Identities=36% Similarity=0.373 Sum_probs=12.7
Q ss_pred eeEeecCccccCch
Q 024415 4 LYALDFDGVLCDSC 17 (268)
Q Consensus 4 ~viFD~DGTL~d~~ 17 (268)
.++++-|||.+|++
T Consensus 41 ~lvLeeDGT~Vd~E 54 (81)
T cd06537 41 TLVLEEDGTAVDSE 54 (81)
T ss_pred EEEEecCCCEEccH
Confidence 48899999999988
No 306
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=33.70 E-value=65 Score=28.48 Aligned_cols=83 Identities=14% Similarity=0.113 Sum_probs=47.3
Q ss_pred CCCe-EEEEcCCC--HHHHHHHHHHhcCCCCCCCeEEecCCCCh----HHHHHHHHhc-CCCCCCcEEEEecCccc---h
Q 024415 151 ASSR-IYIVTTKQ--SRFADALLRELAGVTIPPDRIYGLGTGPK----VEVLKQLQKK-PELQGMTLHFVEDRLAT---L 219 (268)
Q Consensus 151 ~g~~-i~ivTn~~--~~~~~~~l~~~~gl~~~f~~i~~~~~~pk----~~~~~~~~~~-~~~~~~~~l~IGDs~~D---i 219 (268)
.++. ..|+|+.. ..+...+.+. +++ ...+.....++.+. ..++..+... ...+|+-+++.||+..- .
T Consensus 7 ~~~~~~li~tG~H~~~~~g~~~~~~-f~i-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Pd~Vlv~GD~~~~la~a 84 (346)
T PF02350_consen 7 PGFELILIVTGQHLDPEMGDTFFEG-FGI-PKPDYLLDSDSQSMAKSTGLAIIELADVLEREKPDAVLVLGDRNEALAAA 84 (346)
T ss_dssp TTEEEEEEEECSS--CHHHHHHHHH-TT---SEEEE--STTS-HHHHHHHHHHHHHHHHHHHT-SEEEEETTSHHHHHHH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHhh-CCC-CCCCcccccccchHHHHHHHHHHHHHHHHHhcCCCEEEEEcCCchHHHHH
Confidence 3555 46677766 6777777877 788 66777666554322 2222222221 12377888999999654 4
Q ss_pred hcccccccccCCeEEEeecC
Q 024415 220 KNVIKEPELDGWNLYLGDWG 239 (268)
Q Consensus 220 ~~~~~~A~~aG~~~v~v~~g 239 (268)
.+ |...+++.+.+..|
T Consensus 85 la----A~~~~ipv~HieaG 100 (346)
T PF02350_consen 85 LA----AFYLNIPVAHIEAG 100 (346)
T ss_dssp HH----HHHTT-EEEEES--
T ss_pred HH----HHHhCCCEEEecCC
Confidence 45 78899999999877
No 307
>PF08620 RPAP1_C: RPAP1-like, C-terminal; InterPro: IPR013929 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the C-terminal region that contains the motif GLHHH. This region is conserved from yeast to humans.
Probab=33.32 E-value=16 Score=24.43 Aligned_cols=10 Identities=50% Similarity=0.823 Sum_probs=8.7
Q ss_pred eEeecCcccc
Q 024415 5 YALDFDGVLC 14 (268)
Q Consensus 5 viFD~DGTL~ 14 (268)
+=|||+|+|+
T Consensus 3 ~RFdf~G~l~ 12 (73)
T PF08620_consen 3 LRFDFDGNLL 12 (73)
T ss_pred ccccCCCCEe
Confidence 3499999999
No 308
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=33.21 E-value=25 Score=23.80 Aligned_cols=14 Identities=29% Similarity=0.427 Sum_probs=12.6
Q ss_pred eeEeecCccccCch
Q 024415 4 LYALDFDGVLCDSC 17 (268)
Q Consensus 4 ~viFD~DGTL~d~~ 17 (268)
.++++-|||.+|++
T Consensus 42 ~lvL~eDGT~Vd~E 55 (78)
T cd06539 42 TLVLEEDGTVVDTE 55 (78)
T ss_pred EEEEeCCCCEEccH
Confidence 47899999999988
No 309
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=32.37 E-value=2.4e+02 Score=23.56 Aligned_cols=29 Identities=24% Similarity=0.203 Sum_probs=25.5
Q ss_pred HHcCCCeEEEEcCCCHHHHHHHHHHhcCCC
Q 024415 148 LKFASSRIYIVTTKQSRFADALLRELAGVT 177 (268)
Q Consensus 148 L~~~g~~i~ivTn~~~~~~~~~l~~~~gl~ 177 (268)
|+..|++++++|++.+..+...-+. +|+.
T Consensus 35 l~d~G~~Vi~~SSKT~aE~~~l~~~-l~v~ 63 (274)
T COG3769 35 LKDAGVPVILCSSKTRAEMLYLQKS-LGVQ 63 (274)
T ss_pred HHHcCCeEEEeccchHHHHHHHHHh-cCCC
Confidence 3799999999999999988888888 7886
No 310
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=30.98 E-value=46 Score=29.18 Aligned_cols=32 Identities=22% Similarity=0.228 Sum_probs=27.4
Q ss_pred CCCcEEEEecCc-cchhccccccc---------------ccCCeEEEeecCC
Q 024415 205 QGMTLHFVEDRL-ATLKNVIKEPE---------------LDGWNLYLGDWGY 240 (268)
Q Consensus 205 ~~~~~l~IGDs~-~Di~~~~~~A~---------------~aG~~~v~v~~g~ 240 (268)
.+..+-||||.+ +|+.. |. +.||..|+|.+|.
T Consensus 296 ~~k~lymvGDNP~sDv~G----A~lf~~yap~~~~g~~~~~~w~SILV~TGV 343 (389)
T KOG1618|consen 296 PIKKLYMVGDNPMSDVRG----ANLFHQYAPELGAGGSANYGWISILVRTGV 343 (389)
T ss_pred CcceeeeecCCCcccccc----cccccccccccccccccCCCceEEEEeeee
Confidence 457888999996 79999 86 8889999999984
No 311
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=30.36 E-value=1.6e+02 Score=25.36 Aligned_cols=50 Identities=14% Similarity=0.057 Sum_probs=33.7
Q ss_pred ChHHHHHHHHhcCCCCCCcEEEEecCccchhcccccccccCCeEEEeecCCCCHHHHH
Q 024415 190 PKVEVLKQLQKKPELQGMTLHFVEDRLATLKNVIKEPELDGWNLYLGDWGYNTQKERE 247 (268)
Q Consensus 190 pk~~~~~~~~~~~~~~~~~~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~ 247 (268)
.+..-+..+.++.+.. -|-=|+..||.. ..-.|..+|+++.|..+++.+-
T Consensus 225 SNs~rL~eiA~~~g~~----aylId~~~ei~~----~w~~~~~~VGvTAGAStPd~lV 274 (294)
T COG0761 225 SNSNRLAEIAKRHGKP----AYLIDDAEEIDP----EWLKGVKTVGVTAGASTPDWLV 274 (294)
T ss_pred ccHHHHHHHHHHhCCC----eEEeCChHhCCH----HHhcCccEEEEecCCCCCHHHH
Confidence 4455555566665653 233377788888 8888888888888877666553
No 312
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=29.98 E-value=30 Score=23.44 Aligned_cols=14 Identities=29% Similarity=0.294 Sum_probs=12.6
Q ss_pred eeEeecCccccCch
Q 024415 4 LYALDFDGVLCDSC 17 (268)
Q Consensus 4 ~viFD~DGTL~d~~ 17 (268)
.|+++-|||.+|++
T Consensus 42 ~lvL~eDGTeVddE 55 (78)
T cd01615 42 TLVLEEDGTEVDDE 55 (78)
T ss_pred EEEEeCCCcEEccH
Confidence 48899999999988
No 313
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=29.01 E-value=32 Score=23.44 Aligned_cols=14 Identities=21% Similarity=0.309 Sum_probs=12.4
Q ss_pred eeEeecCccccCch
Q 024415 4 LYALDFDGVLCDSC 17 (268)
Q Consensus 4 ~viFD~DGTL~d~~ 17 (268)
.|+++-|||.+|++
T Consensus 44 ~lvL~eDGT~VddE 57 (80)
T cd06536 44 TLVLAEDGTIVEDE 57 (80)
T ss_pred EEEEecCCcEEccH
Confidence 47899999999988
No 314
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=28.87 E-value=1.4e+02 Score=25.32 Aligned_cols=57 Identities=18% Similarity=0.184 Sum_probs=32.3
Q ss_pred ChHHHHHcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecCCCChHHHHHHHHhc
Q 024415 143 GIPDALKFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGTGPKVEVLKQLQKK 201 (268)
Q Consensus 143 g~~e~L~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~~~pk~~~~~~~~~~ 201 (268)
|+.+.++++||.+.+++.......+..++.+ +....|.++-....++.+-+..+.+.
T Consensus 22 gIe~~a~~~Gy~l~l~~t~~~~~~e~~i~~l--~~~~vDGiI~~s~~~~~~~l~~~~~~ 78 (279)
T PF00532_consen 22 GIEQEAREHGYQLLLCNTGDDEEKEEYIELL--LQRRVDGIILASSENDDEELRRLIKS 78 (279)
T ss_dssp HHHHHHHHTTCEEEEEEETTTHHHHHHHHHH--HHTTSSEEEEESSSCTCHHHHHHHHT
T ss_pred HHHHHHHHcCCEEEEecCCCchHHHHHHHHH--HhcCCCEEEEecccCChHHHHHHHHc
Confidence 4556668999999877755444444666653 33457776544443343334444333
No 315
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=28.19 E-value=32 Score=29.24 Aligned_cols=16 Identities=31% Similarity=0.418 Sum_probs=13.5
Q ss_pred CceeEeecCccccCch
Q 024415 2 ADLYALDFDGVLCDSC 17 (268)
Q Consensus 2 ~~~viFD~DGTL~d~~ 17 (268)
.|.+++|+|.||+.+.
T Consensus 89 kk~lVLDLDeTLvHss 104 (262)
T KOG1605|consen 89 RKTLVLDLDETLVHSS 104 (262)
T ss_pred CceEEEeCCCcccccc
Confidence 3689999999998765
No 316
>PF06901 FrpC: RTX iron-regulated protein FrpC; InterPro: IPR010692 This family consists of several RTX iron-regulated FrpC proteins which appear to be found exclusively in Neisseria meningitidis. FrpC has been shown to be related to the RTX family of bacterial cytotoxins. FrpC is found in the meningococcal outer membrane. The function of this family is unknown although it is thought to be a virulence factor [].
Probab=27.63 E-value=31 Score=27.74 Aligned_cols=13 Identities=23% Similarity=0.358 Sum_probs=11.2
Q ss_pred ceeEeecCccccC
Q 024415 3 DLYALDFDGVLCD 15 (268)
Q Consensus 3 ~~viFD~DGTL~d 15 (268)
..|-||||||+.-
T Consensus 59 ~~v~~D~~GT~m~ 71 (271)
T PF06901_consen 59 HTVTFDFQGTKMV 71 (271)
T ss_pred eeEEEeccceEEE
Confidence 4799999999974
No 317
>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]
Probab=27.13 E-value=81 Score=25.68 Aligned_cols=46 Identities=17% Similarity=0.099 Sum_probs=38.2
Q ss_pred cCCCChHHHHHHHHhcCCCCCCcEEEEecCc---cchhcccccccccCCeEEEeecC
Q 024415 186 LGTGPKVEVLKQLQKKPELQGMTLHFVEDRL---ATLKNVIKEPELDGWNLYLGDWG 239 (268)
Q Consensus 186 ~~~~pk~~~~~~~~~~~~~~~~~~l~IGDs~---~Di~~~~~~A~~aG~~~v~v~~g 239 (268)
..++|+++.+.++......+ +++|=+. .|++- +.+.|+..+.+.+-
T Consensus 164 t~~G~~~E~l~~~~~~s~~p----VllGGGV~g~Edlel----~~~~Gv~gvLvaTa 212 (229)
T COG1411 164 TKSGPDYELLTKVLELSEHP----VLLGGGVGGMEDLEL----LLGMGVSGVLVATA 212 (229)
T ss_pred cccCCCHHHHHHHHHhccCc----eeecCCcCcHHHHHH----HhcCCCceeeehhh
Confidence 34469999999999888878 9999885 47777 88899999988765
No 318
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=26.46 E-value=56 Score=30.12 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=11.5
Q ss_pred CceeEeecCccccCchh
Q 024415 2 ADLYALDFDGVLCDSCG 18 (268)
Q Consensus 2 ~~~viFD~DGTL~d~~~ 18 (268)
+++|-||+|-||+-...
T Consensus 12 i~~iGFDmDyTLa~Y~~ 28 (448)
T PF05761_consen 12 IDVIGFDMDYTLARYKS 28 (448)
T ss_dssp --EEEE-TBTTTBEE-C
T ss_pred CCEEEECcccchhhcCH
Confidence 46899999999997664
No 319
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=25.74 E-value=35 Score=30.76 Aligned_cols=16 Identities=19% Similarity=0.156 Sum_probs=13.3
Q ss_pred ceeEeecCccccCchh
Q 024415 3 DLYALDFDGVLCDSCG 18 (268)
Q Consensus 3 ~~viFD~DGTL~d~~~ 18 (268)
.+|.||+|+||.....
T Consensus 28 ~~~GfdmDyTL~~Y~~ 43 (424)
T KOG2469|consen 28 GIVGFDMDYTLARYNL 43 (424)
T ss_pred cEEeeccccchhhhcc
Confidence 5799999999986553
No 320
>PLN02887 hydrolase family protein
Probab=25.40 E-value=1.2e+02 Score=29.10 Aligned_cols=38 Identities=16% Similarity=0.118 Sum_probs=31.1
Q ss_pred CCCCChHHHH---HcCCCeEEEEcCCCHHHHHHHHHHhcCCC
Q 024415 139 RFYPGIPDAL---KFASSRIYIVTTKQSRFADALLRELAGVT 177 (268)
Q Consensus 139 ~~~pg~~e~L---~~~g~~i~ivTn~~~~~~~~~l~~~~gl~ 177 (268)
.+.+...+.| +++|+.++++|+.+...+...++. +++.
T Consensus 325 ~Is~~t~eAI~kl~ekGi~~vIATGR~~~~i~~~l~~-L~l~ 365 (580)
T PLN02887 325 QISETNAKALKEALSRGVKVVIATGKARPAVIDILKM-VDLA 365 (580)
T ss_pred ccCHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHH-hCcc
Confidence 3455666777 589999999999999999988988 6774
No 321
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=25.21 E-value=41 Score=22.84 Aligned_cols=14 Identities=36% Similarity=0.309 Sum_probs=12.5
Q ss_pred eeEeecCccccCch
Q 024415 4 LYALDFDGVLCDSC 17 (268)
Q Consensus 4 ~viFD~DGTL~d~~ 17 (268)
.|+++-|||.+|++
T Consensus 41 ~lvL~eDGT~Vd~E 54 (79)
T cd06538 41 SLVLDEDGTGVDTE 54 (79)
T ss_pred EEEEecCCcEEccH
Confidence 48899999999988
No 322
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=23.26 E-value=3.4e+02 Score=23.84 Aligned_cols=17 Identities=18% Similarity=0.077 Sum_probs=11.9
Q ss_pred HHHHcCCCeEEEEcCCC
Q 024415 146 DALKFASSRIYIVTTKQ 162 (268)
Q Consensus 146 e~L~~~g~~i~ivTn~~ 162 (268)
+.|+++|++++|+|-+.
T Consensus 59 ~~L~~~G~~~~IlSRGY 75 (326)
T PF02606_consen 59 RLLQARGYRPAILSRGY 75 (326)
T ss_pred HHHHhcCCceEEEcCCC
Confidence 34468888888888543
No 323
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=22.99 E-value=2.2e+02 Score=25.63 Aligned_cols=87 Identities=17% Similarity=0.022 Sum_probs=54.3
Q ss_pred HcCCCe-EEEEcCCCH--HHHHHHHHHhcCCC-CCCCeEEecCCCCh-------HHHHHHHHhcCCCCCCcEEEEecCcc
Q 024415 149 KFASSR-IYIVTTKQS--RFADALLRELAGVT-IPPDRIYGLGTGPK-------VEVLKQLQKKPELQGMTLHFVEDRLA 217 (268)
Q Consensus 149 ~~~g~~-i~ivTn~~~--~~~~~~l~~~~gl~-~~f~~i~~~~~~pk-------~~~~~~~~~~~~~~~~~~l~IGDs~~ 217 (268)
+..++. +.++|+..+ ++...+++. +++. .-++.-+..+..+- ...+..+.. ..+|+-+++=||+.+
T Consensus 28 ~~~~~~~~vi~TGQH~d~em~~~~le~-~~i~~pdy~L~i~~~~~tl~~~t~~~i~~~~~vl~--~~kPD~VlVhGDT~t 104 (383)
T COG0381 28 KDPDFELIVIHTGQHRDYEMLDQVLEL-FGIRKPDYDLNIMKPGQTLGEITGNIIEGLSKVLE--EEKPDLVLVHGDTNT 104 (383)
T ss_pred hCCCCceEEEEecccccHHHHHHHHHH-hCCCCCCcchhccccCCCHHHHHHHHHHHHHHHHH--hhCCCEEEEeCCcch
Confidence 333344 677888877 899999999 7997 44554444222111 334444444 567888899999976
Q ss_pred chhcccccccccCCeEEEeecC
Q 024415 218 TLKNVIKEPELDGWNLYLGDWG 239 (268)
Q Consensus 218 Di~~~~~~A~~aG~~~v~v~~g 239 (268)
-+.+++. |..-.+++..|-.|
T Consensus 105 ~lA~ala-a~~~~IpV~HvEAG 125 (383)
T COG0381 105 TLAGALA-AFYLKIPVGHVEAG 125 (383)
T ss_pred HHHHHHH-HHHhCCceEEEecc
Confidence 5553000 56667777777555
No 324
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=22.86 E-value=1.7e+02 Score=23.43 Aligned_cols=43 Identities=9% Similarity=-0.018 Sum_probs=31.9
Q ss_pred CCCcEEEEecCccchhcccccccccCCeEEEeecCCCCHHHHHh
Q 024415 205 QGMTLHFVEDRLATLKNVIKEPELDGWNLYLGDWGYNTQKEREE 248 (268)
Q Consensus 205 ~~~~~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~~~ 248 (268)
.+++++.||-|.-+.-+ ..+|...|+++|+++....+...+..
T Consensus 57 ~~~~~~liGSSlGG~~A-~~La~~~~~~avLiNPav~p~~~l~~ 99 (187)
T PF05728_consen 57 KPENVVLIGSSLGGFYA-TYLAERYGLPAVLINPAVRPYELLQD 99 (187)
T ss_pred CCCCeEEEEEChHHHHH-HHHHHHhCCCEEEEcCCCCHHHHHHH
Confidence 34458999999887776 12266779999999988777766655
No 325
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=22.76 E-value=2.5e+02 Score=23.98 Aligned_cols=54 Identities=20% Similarity=0.220 Sum_probs=38.7
Q ss_pred CChHHHHHcCCCeEEEEcCCCHHHHHHHHHHhcCCC-CCCCeEEecC-CC--ChHHHHH
Q 024415 142 PGIPDALKFASSRIYIVTTKQSRFADALLRELAGVT-IPPDRIYGLG-TG--PKVEVLK 196 (268)
Q Consensus 142 pg~~e~L~~~g~~i~ivTn~~~~~~~~~l~~~~gl~-~~f~~i~~~~-~~--pk~~~~~ 196 (268)
.++.+..++.|...++.|+-....++...+. +|++ ..++.+++.+ ++ |.-.+.+
T Consensus 268 e~I~~~a~r~gL~~Vv~~GlGefLi~~A~~~-lg~ec~~i~e~~g~~~s~v~PA~a~a~ 325 (330)
T COG1548 268 ENIEEKAKRYGLNTVVATGLGEFLIQEACKR-LGYECISIDETYGKEVSKVAPAVAAAK 325 (330)
T ss_pred HHHHHHHHHcChhhhhhccchHHHHHHHHHh-hCCeEEEhhhhhccchhhhchHHHHHH
Confidence 4445555899999999999888888888888 7886 4567777766 33 5544433
No 326
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=22.72 E-value=49 Score=22.44 Aligned_cols=14 Identities=29% Similarity=0.273 Sum_probs=12.0
Q ss_pred eeEeecCccccCch
Q 024415 4 LYALDFDGVLCDSC 17 (268)
Q Consensus 4 ~viFD~DGTL~d~~ 17 (268)
.++++=|||.+|++
T Consensus 42 ~lvL~eDGT~VddE 55 (78)
T PF02017_consen 42 RLVLEEDGTEVDDE 55 (78)
T ss_dssp EEEETTTTCBESSC
T ss_pred EEEEeCCCcEEccH
Confidence 36888999999977
No 327
>PF08013 Tagatose_6_P_K: Tagatose 6 phosphate kinase; InterPro: IPR012062 Escherichia coli and other enteric bacteria contain two closely related D-tagatose 1,6-bisphosphate (TagBP)-specific aldolases involved in catabolism of galactitol (genes gatY gatZ) and of N-acetyl-galactosamine and D-galactosamine (genes kbaY, kbaZ, also called agaY, agaZ). The catalytic subunits GatY/KbaY alone are sufficient to show aldolase activity and contain most or all of the residues that have been identified as essential in substrate/product recognition and catalysis for class II aldolases [, ]. However, these aldolases differ from other Class II aldolases (which are homodimeric enzymes) in that they require subunits GatZ/KbaZ for full activity and for good in vivo and in vitro stability. The Z subunits alone do not show any aldolase activity []. It should be noted that the previous suggestion of a tagatose 6P-kinase function for AgaZ [] and other members of this family turned out to be erroneous [, ].; GO: 0019402 galactitol metabolic process; PDB: 2FIQ_A 3TXV_A.
Probab=22.58 E-value=2.5e+02 Score=25.61 Aligned_cols=96 Identities=13% Similarity=0.123 Sum_probs=49.5
Q ss_pred hHHHH--HcCCCeEEEEc--CCCHHHHHHHHHHhcCCCCCCCeEEecC----------CC--Ch--HHHHHHHHhcCCCC
Q 024415 144 IPDAL--KFASSRIYIVT--TKQSRFADALLRELAGVTIPPDRIYGLG----------TG--PK--VEVLKQLQKKPELQ 205 (268)
Q Consensus 144 ~~e~L--~~~g~~i~ivT--n~~~~~~~~~l~~~~gl~~~f~~i~~~~----------~~--pk--~~~~~~~~~~~~~~ 205 (268)
+.+++ ++.|.+++|.| +.+...++..++. ....-....+.+. +| |+ ...+..+.++.+++
T Consensus 4 l~~lv~~~k~G~~~gI~SVCsahp~VieAAl~~--a~~~~~pvLiEAT~NQVnq~GGYTGmtP~dF~~~V~~iA~~~g~~ 81 (424)
T PF08013_consen 4 LKELVKRHKAGEPVGIYSVCSAHPLVIEAALER--AKEDDSPVLIEATSNQVNQFGGYTGMTPADFRDFVREIADEVGFP 81 (424)
T ss_dssp -HHHHHHHHTT--B-EEEE----HHHHHHHHHH--CCCS-S-EEEEEETTTCSTT-TTTTB-HHHHHHHHHHHHHHCT--
T ss_pred HHHHHHHHhCCCCCceEEecCCCHHHHHHHHHH--HHhcCCeEEEEeccccccccCCcCCCCHHHHHHHHHHHHHHcCCc
Confidence 45566 57888877776 4455567777775 5555555554332 12 43 55678888899999
Q ss_pred CCcEEEEecCc--c---chh----c--cccc---ccccCCeEEEeecCCC
Q 024415 206 GMTLHFVEDRL--A---TLK----N--VIKE---PELDGWNLYLGDWGYN 241 (268)
Q Consensus 206 ~~~~l~IGDs~--~---Di~----~--~~~~---A~~aG~~~v~v~~g~~ 241 (268)
.+.++.-||+. + +.. | ++.+ -..||..-+.++.+-.
T Consensus 82 ~~~iiLGGDHLGP~~w~~lpaeeAM~~A~~li~ayv~AGF~KIHLD~Sm~ 131 (424)
T PF08013_consen 82 RDRIILGGDHLGPNPWQHLPAEEAMAKAKELIRAYVEAGFTKIHLDCSMD 131 (424)
T ss_dssp GGGEEEEEEEESSCCCTTSBHHHHHHHHHHHHHHHHCTT--EEEE---C-
T ss_pred hhhEEecCCCCCcccccCCCHHHHHHHHHHHHHHHHHcCCceEeecCCCC
Confidence 99999999983 1 111 1 0000 3468998898887643
No 328
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=21.92 E-value=3.4e+02 Score=20.14 Aligned_cols=87 Identities=14% Similarity=0.096 Sum_probs=43.4
Q ss_pred cCCCeEEEEcCCCHHHH-HHHHHH---hcCCCCCCCeEEecCC----------CChHHHHHHHHhcCCCCCCcEEEEe--
Q 024415 150 FASSRIYIVTTKQSRFA-DALLRE---LAGVTIPPDRIYGLGT----------GPKVEVLKQLQKKPELQGMTLHFVE-- 213 (268)
Q Consensus 150 ~~g~~i~ivTn~~~~~~-~~~l~~---~~gl~~~f~~i~~~~~----------~pk~~~~~~~~~~~~~~~~~~l~IG-- 213 (268)
.+|-++.++=|+..... ...... ++++.......+.... ...+...+++...+...|.+++++-
T Consensus 33 ~~gg~i~~~G~G~S~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gDvli~iS~ 112 (138)
T PF13580_consen 33 RNGGRIFVCGNGHSAAIASHFAADLGGLFGVNRILLPAIALNDDALTAISNDLEYDEGFARQLLALYDIRPGDVLIVISN 112 (138)
T ss_dssp HTT--EEEEESTHHHHHHHHHHHHHHCHSSSTSSS-SEEETTSTHHHHHHHHTTGGGTHHHHHHHHTT--TT-EEEEEES
T ss_pred HCCCEEEEEcCchhhhHHHHHHHHHhcCcCCCcccccccccccchHhhhhcccchhhHHHHHHHHHcCCCCCCEEEEECC
Confidence 77788888877765322 222222 1344444433333322 1224455777777777887777763
Q ss_pred --cCccchhcccccccccCCeEEEee
Q 024415 214 --DRLATLKNVIKEPELDGWNLYLGD 237 (268)
Q Consensus 214 --Ds~~Di~~~~~~A~~aG~~~v~v~ 237 (268)
.+++=++ +...|+..|+.+|+++
T Consensus 113 SG~s~~vi~-a~~~Ak~~G~~vIalT 137 (138)
T PF13580_consen 113 SGNSPNVIE-AAEEAKERGMKVIALT 137 (138)
T ss_dssp SS-SHHHHH-HHHHHHHTT-EEEEEE
T ss_pred CCCCHHHHH-HHHHHHHCCCEEEEEe
Confidence 3333333 3444899999999886
No 329
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=21.91 E-value=2.7e+02 Score=19.70 Aligned_cols=48 Identities=15% Similarity=0.179 Sum_probs=31.4
Q ss_pred HHHHcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecCCCChHHHHHHHHh
Q 024415 146 DALKFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGLGTGPKVEVLKQLQK 200 (268)
Q Consensus 146 e~L~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~~~pk~~~~~~~~~ 200 (268)
+.|++.|+++++|+-++...++...+. .++ .++ +++.+ +..+++.+.-
T Consensus 7 ~~l~~~gv~lv~I~~g~~~~~~~f~~~-~~~--p~~-ly~D~---~~~lY~~lg~ 54 (115)
T PF13911_consen 7 PELEAAGVKLVVIGCGSPEGIEKFCEL-TGF--PFP-LYVDP---ERKLYKALGL 54 (115)
T ss_pred HHHHHcCCeEEEEEcCCHHHHHHHHhc-cCC--CCc-EEEeC---cHHHHHHhCC
Confidence 445789999999998888667777766 454 566 55433 3444444443
No 330
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=21.75 E-value=4.4e+02 Score=22.99 Aligned_cols=81 Identities=15% Similarity=-0.027 Sum_probs=48.0
Q ss_pred CCe-EEEEcCCCHHHHHHHHHHhcCCCCCCCeEEecCCCCh----HHHH---HHHHhcCCCCCCcEEEEecCccch---h
Q 024415 152 SSR-IYIVTTKQSRFADALLRELAGVTIPPDRIYGLGTGPK----VEVL---KQLQKKPELQGMTLHFVEDRLATL---K 220 (268)
Q Consensus 152 g~~-i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~~~~pk----~~~~---~~~~~~~~~~~~~~l~IGDs~~Di---~ 220 (268)
++. ..++|+.........++. +++...++..++...... ..++ .++.++ ..|+=++..||+...+ .
T Consensus 28 ~~~~~~~~tg~h~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~pDiv~~~gd~~~~la~a~ 104 (365)
T TIGR00236 28 EIDSYVIVTAQHREMLDQVLDL-FHLPPDYDLNIMSPGQTLGEITSNMLEGLEELLLE--EKPDIVLVQGDTTTTLAGAL 104 (365)
T ss_pred CCCEEEEEeCCCHHHHHHHHHh-cCCCCCeeeecCCCCCCHHHHHHHHHHHHHHHHHH--cCCCEEEEeCCchHHHHHHH
Confidence 443 577888888788888887 788633333333321111 2222 233333 3466668888986543 4
Q ss_pred cccccccccCCeEEEeecC
Q 024415 221 NVIKEPELDGWNLYLGDWG 239 (268)
Q Consensus 221 ~~~~~A~~aG~~~v~v~~g 239 (268)
+ |+..|++.+.+..|
T Consensus 105 a----a~~~~ipv~h~~~g 119 (365)
T TIGR00236 105 A----AFYLQIPVGHVEAG 119 (365)
T ss_pred H----HHHhCCCEEEEeCC
Confidence 4 78889998877544
No 331
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=21.47 E-value=1.8e+02 Score=24.39 Aligned_cols=80 Identities=6% Similarity=0.050 Sum_probs=0.0
Q ss_pred cCCCeEEEEcCC---CHHHHHHHHHHhc-CCCCCCCeEEecCCC-ChHHHHHHHHhcCCCCCCcEEEEecCc--cchhcc
Q 024415 150 FASSRIYIVTTK---QSRFADALLRELA-GVTIPPDRIYGLGTG-PKVEVLKQLQKKPELQGMTLHFVEDRL--ATLKNV 222 (268)
Q Consensus 150 ~~g~~i~ivTn~---~~~~~~~~l~~~~-gl~~~f~~i~~~~~~-pk~~~~~~~~~~~~~~~~~~l~IGDs~--~Di~~~ 222 (268)
+.++.+-++|++ ..+.++.....++ .+..-|-.+++.... |-|...+.+...-+++ |++|||.+ ..-..
T Consensus 28 RedI~vrv~gsGaKm~pe~~e~~~~~~~~~~~pdf~I~isPN~~~PGP~~ARE~l~~~~iP---~IvI~D~p~~k~kd~- 103 (276)
T PF01993_consen 28 REDIDVRVVGSGAKMGPEDVEEVVTKMLKEWDPDFVIVISPNAAAPGPTKAREMLSAKGIP---CIVISDAPTKKAKDA- 103 (276)
T ss_dssp -SSEEEEEEEEET--SHHHHHHHHHHHHHHH--SEEEEE-S-TTSHHHHHHHHHHHHSSS----EEEEEEGGGGGGHHH-
T ss_pred cCCceEEEeccCCCCCHHHHHHHHHHHHHhhCCCEEEEECCCCCCCCcHHHHHHHHhCCCC---EEEEcCCCchhhHHH-
Q ss_pred cccccccCCeEEEe
Q 024415 223 IKEPELDGWNLYLG 236 (268)
Q Consensus 223 ~~~A~~aG~~~v~v 236 (268)
-+..|+-.|.+
T Consensus 104 ---l~~~g~GYIiv 114 (276)
T PF01993_consen 104 ---LEEEGFGYIIV 114 (276)
T ss_dssp ---HHHTT-EEEEE
T ss_pred ---HHhcCCcEEEE
No 332
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=21.33 E-value=73 Score=26.95 Aligned_cols=51 Identities=10% Similarity=0.097 Sum_probs=37.6
Q ss_pred ChHHHHHHHHhcCCCCCCcEEEEecCccchhcccccccccCCeEEEeecCCC
Q 024415 190 PKVEVLKQLQKKPELQGMTLHFVEDRLATLKNVIKEPELDGWNLYLGDWGYN 241 (268)
Q Consensus 190 pk~~~~~~~~~~~~~~~~~~l~IGDs~~Di~~~~~~A~~aG~~~v~v~~g~~ 241 (268)
.+...+...+...|++-.+...|||.+.+|..+.+.|..- .+.|-++-|-+
T Consensus 21 tNa~~la~~L~~~G~~v~~~~~VgD~~~~I~~~l~~a~~r-~D~vI~tGGLG 71 (255)
T COG1058 21 TNAAFLADELTELGVDLARITTVGDNPDRIVEALREASER-ADVVITTGGLG 71 (255)
T ss_pred chHHHHHHHHHhcCceEEEEEecCCCHHHHHHHHHHHHhC-CCEEEECCCcC
Confidence 5666777777778998888899999998888866655555 66666655544
No 333
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=20.95 E-value=60 Score=25.88 Aligned_cols=79 Identities=13% Similarity=0.108 Sum_probs=29.6
Q ss_pred cCCCCCChHHHHHcCCCeEEEEcCCCHHHHHHHHHHh----cCCCCCCCeEEecCCCChHHHHHHHHhcCCCCCCcEEEE
Q 024415 137 ANRFYPGIPDALKFASSRIYIVTTKQSRFADALLREL----AGVTIPPDRIYGLGTGPKVEVLKQLQKKPELQGMTLHFV 212 (268)
Q Consensus 137 ~~~~~pg~~e~L~~~g~~i~ivTn~~~~~~~~~l~~~----~gl~~~f~~i~~~~~~pk~~~~~~~~~~~~~~~~~~l~I 212 (268)
+..+-|+....++++|++++++.+.-..........+ -.+-..||.|...+. +-.+++ .++|..++++...
T Consensus 103 EtElWPnll~~a~~~~ip~~LvNarls~~s~~~~~~~~~~~r~~l~~f~~i~aqs~----~da~r~-~~lG~~~~~v~v~ 177 (186)
T PF04413_consen 103 ETELWPNLLREAKRRGIPVVLVNARLSERSFRRYRRFPFLFRPLLSRFDRILAQSE----ADAERF-RKLGAPPERVHVT 177 (186)
T ss_dssp S----HHHHHH-----S-EEEEEE--------------HHHHHHGGG-SEEEESSH----HHHHHH-HTTT-S--SEEE-
T ss_pred ccccCHHHHHHHhhcCCCEEEEeeeeccccchhhhhhHHHHHHHHHhCCEEEECCH----HHHHHH-HHcCCCcceEEEe
Confidence 3467777777778999999999976443322221110 012245777766543 333343 3678888899999
Q ss_pred ecCccchh
Q 024415 213 EDRLATLK 220 (268)
Q Consensus 213 GDs~~Di~ 220 (268)
||-..|..
T Consensus 178 GnlKfd~~ 185 (186)
T PF04413_consen 178 GNLKFDQA 185 (186)
T ss_dssp --GGG---
T ss_pred Ccchhccc
Confidence 99877753
No 334
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=20.65 E-value=2.4e+02 Score=18.86 Aligned_cols=41 Identities=15% Similarity=0.140 Sum_probs=34.4
Q ss_pred CCCChHHHHHHHHhcCCCCCCcEEEEecCccchhcccccccccCC
Q 024415 187 GTGPKVEVLKQLQKKPELQGMTLHFVEDRLATLKNVIKEPELDGW 231 (268)
Q Consensus 187 ~~~pk~~~~~~~~~~~~~~~~~~l~IGDs~~Di~~~~~~A~~aG~ 231 (268)
+..|-...++...+++++++..+..|-+.-.+|.. ++.+|-
T Consensus 24 E~aPftAvlkfaAEeFkv~~~TsAiiTndGvGINP----~qtAGn 64 (82)
T cd01766 24 ESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINP----AQTAGN 64 (82)
T ss_pred ccCchHHHHHHHHHhcCCCccceeEEecCccccCh----hhcccc
Confidence 33477788899999999999888888888888998 888884
No 335
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=20.60 E-value=1e+02 Score=21.73 Aligned_cols=36 Identities=17% Similarity=0.023 Sum_probs=23.0
Q ss_pred CcEEEE-ecCccchhcccccccccCCeEEEeecCCCCHHHH
Q 024415 207 MTLHFV-EDRLATLKNVIKEPELDGWNLYLGDWGYNTQKER 246 (268)
Q Consensus 207 ~~~l~I-GDs~~Di~~~~~~A~~aG~~~v~v~~g~~~~~~~ 246 (268)
..++.+ ||+..=+.. |..+|+.++.++.|....++.
T Consensus 41 ~~lvIt~gdR~di~~~----a~~~~i~~iIltg~~~~~~~v 77 (105)
T PF07085_consen 41 GDLVITPGDREDIQLA----AIEAGIACIILTGGLEPSEEV 77 (105)
T ss_dssp TEEEEEETT-HHHHHH----HCCTTECEEEEETT----HHH
T ss_pred CeEEEEeCCcHHHHHH----HHHhCCCEEEEeCCCCCCHHH
Confidence 555777 888666666 888998888888776655554
No 336
>COG4483 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.39 E-value=45 Score=21.66 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=19.4
Q ss_pred HHHHHhcCCCCCCcEEEEecCccchhc
Q 024415 195 LKQLQKKPELQGMTLHFVEDRLATLKN 221 (268)
Q Consensus 195 ~~~~~~~~~~~~~~~l~IGDs~~Di~~ 221 (268)
++++.+++|+- ++.||...||++
T Consensus 7 VqQlLK~~G~i----vyfg~r~~~iem 29 (68)
T COG4483 7 VQQLLKKFGII----VYFGKRLYDIEM 29 (68)
T ss_pred HHHHHHHCCee----eecCCHHHHHHH
Confidence 46778888888 999999988888
No 337
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=20.25 E-value=1.6e+02 Score=24.46 Aligned_cols=36 Identities=25% Similarity=0.140 Sum_probs=27.3
Q ss_pred HcCCCeEEEEcCCCHHHHHHHHHHhcCCCCCCCeEEec
Q 024415 149 KFASSRIYIVTTKQSRFADALLRELAGVTIPPDRIYGL 186 (268)
Q Consensus 149 ~~~g~~i~ivTn~~~~~~~~~l~~~~gl~~~f~~i~~~ 186 (268)
.+.++.++++|+.+...+...++. .++ ..+|.++++
T Consensus 32 ~~~~~~~v~~TGRs~~~~~~~~~~-~~l-~~Pd~~I~s 67 (247)
T PF05116_consen 32 ARPEILFVYVTGRSLESVLRLLRE-YNL-PQPDYIITS 67 (247)
T ss_dssp HCCGEEEEEE-SS-HHHHHHHHHH-CT--EE-SEEEET
T ss_pred hCCCceEEEECCCCHHHHHHHHHh-CCC-CCCCEEEec
Confidence 478899999999999999999998 687 356888776
No 338
>cd07044 CofD_YvcK Family of CofD-like proteins and proteins related to YvcK. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis. YvcK from Bacillus subtilis is a member of a family of mostly uncharacterized proteins and has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and pentose phosphate pathway. Both families appear to have a conserved phosphate binding site, but ha
Probab=20.12 E-value=5.9e+02 Score=22.23 Aligned_cols=60 Identities=27% Similarity=0.200 Sum_probs=35.3
Q ss_pred CCCCChHHHHHcCCCeEEEEcCC-----------CHHHHHHHHHHhcCCCCCCCeEEecCCCChHHHHHHHHh
Q 024415 139 RFYPGIPDALKFASSRIYIVTTK-----------QSRFADALLRELAGVTIPPDRIYGLGTGPKVEVLKQLQK 200 (268)
Q Consensus 139 ~~~pg~~e~L~~~g~~i~ivTn~-----------~~~~~~~~l~~~~gl~~~f~~i~~~~~~pk~~~~~~~~~ 200 (268)
-+.||+.+.|++..-+.+.|+|- ....++...++ .|- ..+|.++.....+..+.+++...
T Consensus 193 Llv~gi~eAi~~s~a~kV~V~ni~t~pget~~~s~~~~v~~~~~~-~~~-~~lD~vlvn~~~~~~~~~~~y~~ 263 (309)
T cd07044 193 ISVPGIREALKKTXAKKVYVSNIXTQPGETDEYTSSDHAEALQRH-LGR-PFIDVVLVDEEDRSDEVXNSYRF 263 (309)
T ss_pred cCcHhHHHHHHhcCCCeEEECCCCCCCcccCCCCHHHHHHHHHHh-cCC-CcceEEEECCCCCchHHHHHHHh
Confidence 36689999996555666667763 12345555555 442 56788877654433444444433
No 339
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=20.07 E-value=4.8e+02 Score=22.50 Aligned_cols=20 Identities=20% Similarity=0.341 Sum_probs=9.8
Q ss_pred CeEEEEcCCCHHHHHHHHHH
Q 024415 153 SRIYIVTTKQSRFADALLRE 172 (268)
Q Consensus 153 ~~i~ivTn~~~~~~~~~l~~ 172 (268)
.+++|+-++.....+.++.+
T Consensus 94 ~kiavl~Sg~g~nl~al~~~ 113 (289)
T PRK13010 94 PKVVIMVSKFDHCLNDLLYR 113 (289)
T ss_pred eEEEEEEeCCCccHHHHHHH
Confidence 35555544444444555554
Done!