BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024418
(268 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3F2I|A Chain A, Crystal Structure Of The Alr0221 Protein From Nostoc,
Northeast Structural Genomics Consortium Target Nsr422.
pdb|3F2I|B Chain B, Crystal Structure Of The Alr0221 Protein From Nostoc,
Northeast Structural Genomics Consortium Target Nsr422.
pdb|3F2I|C Chain C, Crystal Structure Of The Alr0221 Protein From Nostoc,
Northeast Structural Genomics Consortium Target Nsr422.
pdb|3F2I|D Chain D, Crystal Structure Of The Alr0221 Protein From Nostoc,
Northeast Structural Genomics Consortium Target Nsr422.
pdb|3F2I|E Chain E, Crystal Structure Of The Alr0221 Protein From Nostoc,
Northeast Structural Genomics Consortium Target Nsr422.
pdb|3F2I|F Chain F, Crystal Structure Of The Alr0221 Protein From Nostoc,
Northeast Structural Genomics Consortium Target Nsr422
Length = 172
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 11/71 (15%)
Query: 87 LHLVRHGQGVHNMEGNNGPEALLSQEFFDAHLSPLGWQQVGNLRKRVEASGLTQKIDLVI 146
L+L+RHG G E L+QE G Q+ + R+ G ++ DL++
Sbjct: 3 LYLIRHGIAEAQKTGIKDEERELTQE---------GKQKTEKVAYRLVKLG--RQFDLIV 51
Query: 147 TSPLLRTLQTA 157
TSPL+R QTA
Sbjct: 52 TSPLIRARQTA 62
>pdb|2AXN|A Chain A, Crystal Structure Of The Human Inducible Form 6-
Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase
pdb|2DWO|A Chain A, Pfkfb3 In Complex With Adp And Pep
pdb|2DWP|A Chain A, A Pseudo Substrate Complex Of 6-Phosphofructo-2-Kinase Of
Pfkfb
pdb|2I1V|B Chain B, Crystal Structure Of Pfkfb3 In Complex With Adp And
Fructose-2,6-Bisphosphate
pdb|3QPU|A Chain A, Pfkfb3 In Complex With Ppi
pdb|3QPV|A Chain A, Pfkfb3 Trapped In A Phospho-Enzyme Intermediate State
pdb|3QPW|A Chain A, Pfkfb3 In Complex With Aluminum Tetrafluoride
Length = 520
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Query: 85 KILHLVRHGQGVHNMEGNNGPEALLSQEFFDAHLSPLGWQQVGNLRKRVEASGLTQKIDL 144
+ ++L RHG+ HN++G G D+ LS G + L K VE L DL
Sbjct: 247 RTIYLCRHGENEHNLQGRIG---------GDSGLSSRGKKFASALSKFVEEQNLK---DL 294
Query: 145 -VITSPLLRTLQTA 157
V TS L T+QTA
Sbjct: 295 RVWTSQLKSTIQTA 308
>pdb|1IHM|A Chain A, Crystal Structure Analysis Of Norwalk Virus Capsid
pdb|1IHM|B Chain B, Crystal Structure Analysis Of Norwalk Virus Capsid
pdb|1IHM|C Chain C, Crystal Structure Analysis Of Norwalk Virus Capsid
Length = 530
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 11/82 (13%)
Query: 65 VSFAALDAATAKHLYSLQHCKILHLVRHGQGVHNMEGNNGPEALLSQEFFDAHLSPL--- 121
V+ ++ ATA + + I + V+ QG + NN P +L HL+P
Sbjct: 36 VAGSSTAVATAGQVNPIDPWIINNFVQAPQGEFTISPNNTPGDVLFDLSLGPHLNPFLLH 95
Query: 122 ------GWQQVGNLRKRVEASG 137
GW VGN+R R+ +G
Sbjct: 96 LSQMYNGW--VGNMRVRIMLAG 115
>pdb|3C7T|A Chain A, Crystal Structure Of The Ecdysone Phosphate Phosphatase,
Eppase, From Bombix Mori In Complex With Tungstate
pdb|3C7T|B Chain B, Crystal Structure Of The Ecdysone Phosphate Phosphatase,
Eppase, From Bombix Mori In Complex With Tungstate
pdb|3C7T|C Chain C, Crystal Structure Of The Ecdysone Phosphate Phosphatase,
Eppase, From Bombix Mori In Complex With Tungstate
pdb|3C7T|D Chain D, Crystal Structure Of The Ecdysone Phosphate Phosphatase,
Eppase, From Bombix Mori In Complex With Tungstate
Length = 263
Score = 31.2 bits (69), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 6/89 (6%)
Query: 115 DAHLSPLGWQQVGNLRKRVEASGLTQKIDLVITSPLLRTLQTAVGVFGGDGESQTDGIDA 174
D L+ LGW Q + + + +G++ I V SP LR ++TA G G + I
Sbjct: 57 DTPLTRLGWFQAQLVGEGMRMAGVS--IKHVYASPALRCVETAQGFLDGLRADPSVKIKV 114
Query: 175 HPSLTATATVNCPPII----AVELCRERL 199
P L + P I +ELC+ L
Sbjct: 115 EPGLFEFKNWHMPKGIDFMTPIELCKAGL 143
>pdb|3RCY|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Roseovarius Sp.
Tm1035
pdb|3RCY|B Chain B, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Roseovarius Sp.
Tm1035
pdb|3RCY|C Chain C, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Roseovarius Sp.
Tm1035
pdb|3RCY|D Chain D, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Roseovarius Sp.
Tm1035
pdb|3RCY|E Chain E, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Roseovarius Sp.
Tm1035
pdb|3RCY|F Chain F, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Roseovarius Sp.
Tm1035
pdb|3RCY|G Chain G, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Roseovarius Sp.
Tm1035
pdb|3RCY|H Chain H, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Roseovarius Sp.
Tm1035
Length = 433
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 13/62 (20%)
Query: 104 GPEALLS--QEFFDAHLSPLGWQQVGNLRKRVEASGLTQKIDLVITSPLLRTLQTAVGVF 161
GPEA+ + ++ F H+ + + + +RV +SG TQ+ DL TA+G F
Sbjct: 47 GPEAMRAVIEDVFARHMEGENPENIELMFRRVYSSGFTQRPDL-----------TAIGAF 95
Query: 162 GG 163
G
Sbjct: 96 SG 97
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.134 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,151,735
Number of Sequences: 62578
Number of extensions: 261178
Number of successful extensions: 461
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 459
Number of HSP's gapped (non-prelim): 14
length of query: 268
length of database: 14,973,337
effective HSP length: 97
effective length of query: 171
effective length of database: 8,903,271
effective search space: 1522459341
effective search space used: 1522459341
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)