Query 024419
Match_columns 268
No_of_seqs 259 out of 3340
Neff 10.7
Searched_HMMs 46136
Date Fri Mar 29 04:27:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024419.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024419hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 100.0 3.5E-28 7.6E-33 202.6 14.9 250 3-253 214-497 (966)
2 KOG4626 O-linked N-acetylgluco 100.0 4.4E-28 9.4E-33 202.1 11.3 258 3-263 180-476 (966)
3 TIGR00990 3a0801s09 mitochondr 99.9 5.4E-24 1.2E-28 189.7 23.6 231 3-247 327-577 (615)
4 TIGR00990 3a0801s09 mitochondr 99.9 2.3E-22 4.9E-27 179.3 19.9 100 7-107 127-226 (615)
5 KOG1126 DNA-binding cell divis 99.9 4.3E-23 9.4E-28 173.7 13.9 227 7-247 353-626 (638)
6 KOG0547 Translocase of outer m 99.9 2E-21 4.4E-26 158.4 22.3 255 5-262 113-516 (606)
7 KOG0547 Translocase of outer m 99.9 6.1E-21 1.3E-25 155.6 20.4 222 7-242 326-567 (606)
8 KOG1126 DNA-binding cell divis 99.9 3.8E-22 8.2E-27 168.0 13.4 196 3-213 417-624 (638)
9 PRK15174 Vi polysaccharide exp 99.9 2.2E-20 4.8E-25 166.7 19.3 242 3-246 72-352 (656)
10 PRK15174 Vi polysaccharide exp 99.9 1.2E-19 2.5E-24 162.2 21.1 230 3-246 106-386 (656)
11 PRK11189 lipoprotein NlpI; Pro 99.8 4.3E-19 9.3E-24 144.2 21.8 128 3-131 60-187 (296)
12 KOG0624 dsRNA-activated protei 99.8 2.9E-19 6.3E-24 140.3 19.8 246 2-248 33-377 (504)
13 KOG0553 TPR repeat-containing 99.8 3.1E-20 6.6E-25 143.7 13.7 122 5-126 79-200 (304)
14 PRK11447 cellulose synthase su 99.8 7.4E-19 1.6E-23 166.5 23.3 87 159-246 606-705 (1157)
15 TIGR02917 PEP_TPR_lipo putativ 99.8 4.6E-19 1E-23 164.2 20.9 226 6-245 566-803 (899)
16 TIGR02917 PEP_TPR_lipo putativ 99.8 1.3E-18 2.8E-23 161.3 22.8 245 3-248 121-399 (899)
17 PRK15359 type III secretion sy 99.8 9.8E-19 2.1E-23 126.7 16.5 117 7-123 24-140 (144)
18 PRK11447 cellulose synthase su 99.8 1.5E-18 3.4E-23 164.3 22.6 201 12-212 274-527 (1157)
19 PRK11788 tetratricopeptide rep 99.8 4E-18 8.7E-23 144.3 21.3 240 7-247 35-317 (389)
20 KOG1155 Anaphase-promoting com 99.8 2.8E-18 6.1E-23 139.4 17.7 165 8-185 331-495 (559)
21 PRK12370 invasion protein regu 99.8 1.1E-17 2.5E-22 147.1 20.6 230 9-252 260-516 (553)
22 KOG0548 Molecular co-chaperone 99.8 9.6E-18 2.1E-22 138.6 18.5 112 8-119 3-114 (539)
23 TIGR02521 type_IV_pilW type IV 99.8 4.1E-17 9E-22 127.7 21.3 168 5-185 29-198 (234)
24 KOG1125 TPR repeat-containing 99.8 6E-18 1.3E-22 140.9 16.9 222 10-244 288-530 (579)
25 PRK11189 lipoprotein NlpI; Pro 99.8 7.1E-18 1.5E-22 137.1 17.1 211 20-247 39-271 (296)
26 PRK11788 tetratricopeptide rep 99.8 3E-17 6.6E-22 139.0 21.4 205 40-245 34-282 (389)
27 PRK12370 invasion protein regu 99.8 3E-17 6.6E-22 144.4 21.9 221 3-238 291-533 (553)
28 PRK09782 bacteriophage N4 rece 99.8 9.9E-17 2.1E-21 147.3 23.4 216 14-245 516-744 (987)
29 PRK10049 pgaA outer membrane p 99.8 7.7E-17 1.7E-21 146.8 22.5 241 3-246 45-344 (765)
30 PRK09782 bacteriophage N4 rece 99.8 4.6E-17 1E-21 149.5 20.8 204 7-224 542-755 (987)
31 KOG1173 Anaphase-promoting com 99.7 1E-16 2.3E-21 133.2 16.9 205 3-213 308-522 (611)
32 KOG1155 Anaphase-promoting com 99.7 3.1E-16 6.7E-21 127.7 18.6 177 3-185 360-536 (559)
33 PRK15363 pathogenicity island 99.7 2.6E-16 5.6E-21 112.4 15.1 103 4-106 32-134 (157)
34 TIGR02552 LcrH_SycD type III s 99.7 3.8E-16 8.3E-21 112.4 15.8 116 3-118 13-128 (135)
35 KOG2076 RNA polymerase III tra 99.7 3.7E-15 8.1E-20 130.0 24.1 127 5-131 137-263 (895)
36 KOG1173 Anaphase-promoting com 99.7 6.7E-16 1.4E-20 128.5 18.6 242 5-247 242-524 (611)
37 TIGR03302 OM_YfiO outer membra 99.7 3.1E-15 6.6E-20 118.0 19.8 114 5-118 31-158 (235)
38 KOG1174 Anaphase-promoting com 99.7 1.7E-15 3.8E-20 121.9 18.3 230 4-247 229-506 (564)
39 TIGR02521 type_IV_pilW type IV 99.7 4E-15 8.7E-20 116.4 20.0 130 3-132 61-192 (234)
40 COG3063 PilF Tfp pilus assembl 99.7 4.8E-15 1E-19 110.9 18.7 126 7-132 35-162 (250)
41 KOG2003 TPR repeat-containing 99.7 9.2E-16 2E-20 125.1 16.2 194 6-212 489-692 (840)
42 PLN03088 SGT1, suppressor of 99.7 1E-15 2.2E-20 127.2 17.0 116 9-124 4-119 (356)
43 KOG2002 TPR-containing nuclear 99.7 1.9E-15 4E-20 132.7 18.8 236 3-249 160-417 (1018)
44 KOG0548 Molecular co-chaperone 99.7 6.2E-16 1.3E-20 128.1 14.3 122 2-123 353-474 (539)
45 PRK10370 formate-dependent nit 99.7 2.2E-15 4.8E-20 114.9 15.8 113 20-132 52-167 (198)
46 KOG2002 TPR-containing nuclear 99.7 5.7E-15 1.2E-19 129.7 19.9 243 4-247 267-565 (1018)
47 PRK10049 pgaA outer membrane p 99.7 1.9E-14 4.1E-19 131.3 24.0 238 4-246 12-306 (765)
48 COG3063 PilF Tfp pilus assembl 99.7 5.6E-15 1.2E-19 110.5 15.9 130 3-132 65-196 (250)
49 KOG0495 HAT repeat protein [RN 99.7 1.7E-14 3.6E-19 122.2 20.1 259 3-265 614-904 (913)
50 KOG1125 TPR repeat-containing 99.7 4.2E-15 9.1E-20 124.2 16.1 173 3-188 315-530 (579)
51 PRK15359 type III secretion sy 99.7 4.5E-15 9.7E-20 107.6 13.9 102 27-131 13-114 (144)
52 PRK10370 formate-dependent nit 99.6 7.1E-15 1.5E-19 112.1 14.5 110 3-112 69-181 (198)
53 KOG0550 Molecular chaperone (D 99.6 1.2E-15 2.7E-20 122.6 10.6 237 5-244 47-353 (486)
54 KOG1156 N-terminal acetyltrans 99.6 7.7E-14 1.7E-18 118.1 20.3 205 4-214 38-253 (700)
55 KOG1840 Kinesin light chain [C 99.6 4.4E-14 9.5E-19 120.3 18.5 230 4-238 196-477 (508)
56 PLN02789 farnesyltranstransfer 99.6 4.9E-14 1.1E-18 114.8 18.1 118 14-131 44-164 (320)
57 PRK14720 transcript cleavage f 99.6 9.1E-14 2E-18 124.8 21.1 127 3-132 27-172 (906)
58 PLN02789 farnesyltranstransfer 99.6 1.9E-13 4E-18 111.4 20.9 120 3-122 67-189 (320)
59 KOG0543 FKBP-type peptidyl-pro 99.6 3.4E-14 7.4E-19 114.8 15.9 122 7-128 208-344 (397)
60 PRK15179 Vi polysaccharide bio 99.6 2.6E-14 5.7E-19 127.0 16.3 130 3-132 82-211 (694)
61 KOG0624 dsRNA-activated protei 99.6 1.7E-13 3.6E-18 108.3 17.7 207 7-213 155-374 (504)
62 PF13429 TPR_15: Tetratricopep 99.6 1.7E-14 3.7E-19 116.7 12.6 126 3-128 40-199 (280)
63 PF13429 TPR_15: Tetratricopep 99.6 9E-15 2E-19 118.3 10.7 128 4-131 143-270 (280)
64 COG5010 TadD Flp pilus assembl 99.6 1.7E-13 3.6E-18 104.7 16.8 130 3-132 96-225 (257)
65 TIGR00540 hemY_coli hemY prote 99.6 8.5E-13 1.8E-17 112.3 22.7 241 6-247 83-372 (409)
66 TIGR02795 tol_pal_ybgF tol-pal 99.6 1.9E-13 4.1E-18 95.8 14.1 107 7-113 2-114 (119)
67 PRK10747 putative protoheme IX 99.6 1.8E-12 3.9E-17 109.9 22.2 240 6-247 83-363 (398)
68 KOG1156 N-terminal acetyltrans 99.6 5.4E-13 1.2E-17 113.0 18.5 237 4-257 4-264 (700)
69 TIGR02552 LcrH_SycD type III s 99.6 1.2E-13 2.6E-18 99.3 12.3 105 28-132 4-108 (135)
70 KOG4234 TPR repeat-containing 99.5 6.1E-13 1.3E-17 97.6 15.4 124 5-128 93-221 (271)
71 COG2956 Predicted N-acetylgluc 99.5 3.3E-12 7.2E-17 100.2 19.7 224 10-243 38-280 (389)
72 KOG4648 Uncharacterized conser 99.5 7.5E-14 1.6E-18 110.3 10.6 228 9-249 99-338 (536)
73 PRK15331 chaperone protein Sic 99.5 6E-13 1.3E-17 95.6 14.1 110 3-113 33-142 (165)
74 TIGR03302 OM_YfiO outer membra 99.5 5.9E-13 1.3E-17 105.0 15.5 126 6-131 69-225 (235)
75 PRK10747 putative protoheme IX 99.5 3.9E-12 8.3E-17 107.9 20.2 232 10-242 121-391 (398)
76 PF13414 TPR_11: TPR repeat; P 99.5 1E-13 2.2E-18 87.4 8.1 66 41-106 3-69 (69)
77 KOG2076 RNA polymerase III tra 99.5 7.6E-12 1.7E-16 109.7 22.0 248 3-251 169-488 (895)
78 PF13414 TPR_11: TPR repeat; P 99.5 9.4E-14 2E-18 87.6 7.6 67 6-72 2-69 (69)
79 PRK02603 photosystem I assembl 99.5 1.1E-12 2.4E-17 98.2 14.7 106 3-108 31-153 (172)
80 PRK14574 hmsH outer membrane p 99.5 3.4E-12 7.4E-17 115.6 20.1 171 2-188 29-201 (822)
81 cd00189 TPR Tetratricopeptide 99.5 8.2E-13 1.8E-17 88.1 12.1 99 9-107 2-100 (100)
82 PRK15363 pathogenicity island 99.5 1.8E-12 3.9E-17 92.8 14.0 99 33-131 26-125 (157)
83 KOG3060 Uncharacterized conser 99.5 9.6E-12 2.1E-16 94.5 17.9 122 4-125 83-204 (289)
84 KOG0550 Molecular chaperone (D 99.5 1.6E-13 3.5E-18 110.6 8.6 224 42-266 50-303 (486)
85 KOG3060 Uncharacterized conser 99.5 2E-11 4.4E-16 92.8 19.0 170 9-188 54-223 (289)
86 KOG2003 TPR repeat-containing 99.5 2.1E-12 4.6E-17 105.7 14.3 235 10-260 422-672 (840)
87 PF12895 Apc3: Anaphase-promot 99.5 2.4E-13 5.1E-18 89.3 7.0 82 19-101 1-84 (84)
88 KOG1840 Kinesin light chain [C 99.5 6.2E-12 1.3E-16 107.3 17.1 198 7-209 241-479 (508)
89 COG5010 TadD Flp pilus assembl 99.5 6.4E-12 1.4E-16 96.1 15.3 129 3-132 63-191 (257)
90 KOG1129 TPR repeat-containing 99.4 1.7E-12 3.6E-17 102.1 11.6 217 11-248 227-465 (478)
91 CHL00033 ycf3 photosystem I as 99.4 7.6E-12 1.6E-16 93.4 14.8 105 5-109 33-154 (168)
92 TIGR00540 hemY_coli hemY prote 99.4 2.7E-11 5.9E-16 103.2 20.0 235 4-238 115-397 (409)
93 PRK15179 Vi polysaccharide bio 99.4 2.4E-11 5.1E-16 108.4 19.5 141 34-187 79-219 (694)
94 KOG1129 TPR repeat-containing 99.4 4.9E-12 1.1E-16 99.5 13.0 198 5-213 254-462 (478)
95 COG4783 Putative Zn-dependent 99.4 3.1E-11 6.8E-16 99.7 17.8 126 4-129 303-428 (484)
96 PRK14574 hmsH outer membrane p 99.4 6.1E-11 1.3E-15 107.6 21.4 237 4-243 99-398 (822)
97 KOG0495 HAT repeat protein [RN 99.4 6.3E-11 1.4E-15 101.0 19.1 205 7-213 651-884 (913)
98 CHL00033 ycf3 photosystem I as 99.4 1.6E-11 3.5E-16 91.6 13.9 140 16-188 8-152 (168)
99 PF13432 TPR_16: Tetratricopep 99.4 2.4E-12 5.2E-17 80.1 7.9 63 12-74 2-64 (65)
100 PF13432 TPR_16: Tetratricopep 99.4 2.5E-12 5.4E-17 80.0 7.7 65 45-109 1-65 (65)
101 PRK10803 tol-pal system protei 99.4 3.4E-11 7.4E-16 95.4 15.9 107 7-113 142-255 (263)
102 PRK10866 outer membrane biogen 99.4 2.2E-10 4.7E-15 90.2 20.2 105 6-110 31-159 (243)
103 COG4235 Cytochrome c biogenesi 99.4 2E-11 4.3E-16 95.7 14.2 108 3-110 152-262 (287)
104 COG2956 Predicted N-acetylgluc 99.4 5.8E-10 1.3E-14 87.8 22.0 195 4-212 66-281 (389)
105 KOG1174 Anaphase-promoting com 99.4 2.1E-11 4.4E-16 98.8 14.3 195 6-213 299-504 (564)
106 PRK02603 photosystem I assembl 99.4 3.5E-11 7.5E-16 90.1 13.7 121 38-191 32-155 (172)
107 PF13525 YfiO: Outer membrane 99.3 1.4E-10 3E-15 89.2 16.5 107 5-111 3-126 (203)
108 cd05804 StaR_like StaR_like; a 99.3 4.7E-11 1E-15 99.9 14.7 172 6-187 42-217 (355)
109 KOG0553 TPR repeat-containing 99.3 2.2E-11 4.8E-16 94.9 10.2 100 43-144 83-182 (304)
110 cd05804 StaR_like StaR_like; a 99.3 2.9E-10 6.2E-15 95.2 17.8 195 3-211 2-217 (355)
111 KOG4162 Predicted calmodulin-b 99.3 7.9E-11 1.7E-15 102.0 12.9 125 8-132 651-777 (799)
112 KOG4162 Predicted calmodulin-b 99.3 9.7E-11 2.1E-15 101.4 12.5 107 4-110 681-789 (799)
113 COG4235 Cytochrome c biogenesi 99.2 5E-10 1.1E-14 87.9 14.3 111 21-131 136-249 (287)
114 PF14559 TPR_19: Tetratricopep 99.2 4.2E-11 9.1E-16 75.1 6.9 65 18-82 2-66 (68)
115 PF09976 TPR_21: Tetratricopep 99.2 1.6E-09 3.5E-14 78.7 15.8 126 6-132 10-141 (145)
116 PF14559 TPR_19: Tetratricopep 99.2 5.8E-11 1.3E-15 74.5 7.1 68 51-118 1-68 (68)
117 PF13512 TPR_18: Tetratricopep 99.2 1.2E-09 2.5E-14 77.1 14.2 107 5-111 8-135 (142)
118 cd00189 TPR Tetratricopeptide 99.2 4.2E-10 9.2E-15 74.7 11.7 89 43-131 2-90 (100)
119 COG4785 NlpI Lipoprotein NlpI, 99.2 9.1E-10 2E-14 82.2 13.5 110 1-110 59-168 (297)
120 KOG4642 Chaperone-dependent E3 99.2 7.4E-11 1.6E-15 88.9 7.8 100 5-104 8-107 (284)
121 PF13371 TPR_9: Tetratricopept 99.2 1.8E-10 4E-15 73.3 8.7 66 15-80 3-68 (73)
122 KOG0545 Aryl-hydrocarbon recep 99.2 9.8E-10 2.1E-14 83.4 13.6 108 6-113 177-302 (329)
123 PLN03088 SGT1, suppressor of 99.2 4.3E-10 9.4E-15 93.7 12.5 89 44-132 5-93 (356)
124 COG1729 Uncharacterized protei 99.2 2.2E-09 4.9E-14 83.3 15.3 107 8-114 142-254 (262)
125 PF12688 TPR_5: Tetratrico pep 99.2 1.8E-09 4E-14 74.9 13.2 96 8-103 2-103 (120)
126 PF13371 TPR_9: Tetratricopept 99.2 3E-10 6.5E-15 72.3 8.6 70 48-117 2-71 (73)
127 KOG1128 Uncharacterized conser 99.2 2.1E-10 4.5E-15 98.9 9.6 128 5-132 483-610 (777)
128 PRK10153 DNA-binding transcrip 99.1 4.7E-09 1E-13 91.2 17.8 125 6-131 338-475 (517)
129 TIGR02795 tol_pal_ybgF tol-pal 99.1 1.2E-09 2.7E-14 76.3 11.9 91 41-131 2-98 (119)
130 KOG1127 TPR repeat-containing 99.1 4E-09 8.6E-14 94.0 16.5 127 5-131 490-652 (1238)
131 KOG1128 Uncharacterized conser 99.1 2.9E-09 6.3E-14 92.0 14.9 165 7-187 424-618 (777)
132 PF09976 TPR_21: Tetratricopep 99.1 2.4E-09 5.1E-14 77.8 12.4 96 6-102 47-145 (145)
133 PF12569 NARP1: NMDA receptor- 99.1 1.2E-08 2.5E-13 88.3 18.5 105 6-110 3-112 (517)
134 PRK11906 transcriptional regul 99.1 3.8E-09 8.3E-14 87.9 14.5 123 9-131 257-394 (458)
135 PF09295 ChAPs: ChAPs (Chs5p-A 99.1 4.9E-09 1.1E-13 87.4 15.1 115 14-131 176-290 (395)
136 KOG0376 Serine-threonine phosp 99.1 3.3E-10 7.2E-15 93.7 7.8 119 7-125 4-122 (476)
137 COG4783 Putative Zn-dependent 99.1 6.3E-09 1.4E-13 86.3 14.8 113 3-115 336-448 (484)
138 PF12895 Apc3: Anaphase-promot 99.1 3.6E-10 7.8E-15 74.0 5.9 78 54-132 2-81 (84)
139 KOG1130 Predicted G-alpha GTPa 99.1 8.6E-10 1.9E-14 89.6 8.8 193 8-209 56-304 (639)
140 PLN03098 LPA1 LOW PSII ACCUMUL 99.1 1.2E-09 2.5E-14 90.8 9.7 68 3-70 71-141 (453)
141 PRK15331 chaperone protein Sic 99.0 4E-09 8.7E-14 76.0 10.9 97 36-132 32-128 (165)
142 COG3071 HemY Uncharacterized e 99.0 5E-07 1.1E-11 73.4 23.7 125 7-131 84-209 (400)
143 PLN03098 LPA1 LOW PSII ACCUMUL 99.0 1.8E-09 3.9E-14 89.7 10.0 69 36-104 70-141 (453)
144 KOG1130 Predicted G-alpha GTPa 99.0 1.5E-09 3.2E-14 88.3 9.1 230 9-238 19-302 (639)
145 PF06552 TOM20_plant: Plant sp 99.0 8.8E-09 1.9E-13 75.0 12.0 96 23-118 7-123 (186)
146 PRK14720 transcript cleavage f 99.0 1.5E-08 3.2E-13 91.9 16.0 97 34-132 24-139 (906)
147 KOG4555 TPR repeat-containing 99.0 5.5E-08 1.2E-12 66.8 14.9 102 7-108 43-148 (175)
148 PLN03081 pentatricopeptide (PP 99.0 1.7E-08 3.8E-13 91.9 16.7 123 7-132 290-414 (697)
149 KOG1127 TPR repeat-containing 99.0 1.7E-08 3.6E-13 90.1 15.5 177 21-212 472-662 (1238)
150 KOG0543 FKBP-type peptidyl-pro 99.0 7.4E-09 1.6E-13 84.3 11.8 100 7-106 257-357 (397)
151 PRK11906 transcriptional regul 99.0 2.1E-08 4.6E-13 83.6 14.2 108 4-111 292-408 (458)
152 PF12688 TPR_5: Tetratrico pep 98.9 2.4E-08 5.1E-13 69.3 11.1 90 42-131 2-97 (120)
153 PF13424 TPR_12: Tetratricopep 98.9 3.7E-09 8E-14 68.1 6.4 67 4-70 2-75 (78)
154 PF13424 TPR_12: Tetratricopep 98.9 1.7E-09 3.6E-14 69.8 4.4 67 38-104 2-75 (78)
155 KOG2376 Signal recognition par 98.9 3.9E-07 8.5E-12 77.5 19.2 202 7-212 12-256 (652)
156 PRK10803 tol-pal system protei 98.9 4.5E-08 9.8E-13 77.8 12.8 92 41-132 142-240 (263)
157 PLN03218 maturation of RBCL 1; 98.9 3.6E-07 7.7E-12 85.8 20.7 126 6-132 506-637 (1060)
158 KOG0551 Hsp90 co-chaperone CNS 98.9 2.3E-08 5.1E-13 79.2 10.9 107 5-111 79-189 (390)
159 PF09295 ChAPs: ChAPs (Chs5p-A 98.9 2.6E-08 5.7E-13 83.1 11.8 106 6-111 199-304 (395)
160 PF14938 SNAP: Soluble NSF att 98.9 1E-07 2.2E-12 77.2 14.6 124 7-131 35-177 (282)
161 PLN03218 maturation of RBCL 1; 98.9 4.9E-07 1.1E-11 84.9 20.5 124 7-132 542-672 (1060)
162 KOG4648 Uncharacterized conser 98.9 8.1E-09 1.8E-13 82.3 7.5 207 44-260 100-311 (536)
163 PRK10153 DNA-binding transcrip 98.9 5.1E-08 1.1E-12 84.8 13.2 106 4-110 373-488 (517)
164 KOG1915 Cell cycle control pro 98.9 4.8E-06 1E-10 69.4 23.7 125 7-132 73-197 (677)
165 KOG3785 Uncharacterized conser 98.9 3.7E-07 7.9E-12 73.4 16.4 177 15-212 30-217 (557)
166 PF04733 Coatomer_E: Coatomer 98.8 3E-07 6.6E-12 74.3 15.6 120 6-125 130-251 (290)
167 PF13525 YfiO: Outer membrane 98.8 2.7E-07 6E-12 70.9 14.4 125 4-128 39-197 (203)
168 KOG4340 Uncharacterized conser 98.8 5.2E-08 1.1E-12 76.4 9.7 179 15-209 18-207 (459)
169 KOG3785 Uncharacterized conser 98.8 1.4E-06 3E-11 70.1 17.7 125 7-131 57-207 (557)
170 PRK10866 outer membrane biogen 98.8 8.8E-07 1.9E-11 69.9 16.6 127 5-131 67-234 (243)
171 PF12569 NARP1: NMDA receptor- 98.8 1.2E-07 2.6E-12 82.1 12.5 91 42-132 195-285 (517)
172 COG4105 ComL DNA uptake lipopr 98.8 3.6E-06 7.9E-11 65.1 19.1 106 6-111 33-152 (254)
173 KOG2376 Signal recognition par 98.7 5.8E-07 1.3E-11 76.5 15.0 182 3-188 42-256 (652)
174 PLN03077 Protein ECB2; Provisi 98.7 1.1E-06 2.4E-11 82.1 17.8 222 9-251 426-696 (857)
175 PLN03081 pentatricopeptide (PP 98.7 1.4E-06 3.1E-11 79.5 17.3 236 8-251 260-533 (697)
176 PF14938 SNAP: Soluble NSF att 98.7 8.4E-07 1.8E-11 71.8 14.1 124 7-131 75-218 (282)
177 PF13428 TPR_14: Tetratricopep 98.6 1.1E-07 2.3E-12 53.8 5.5 40 43-82 3-42 (44)
178 PF13428 TPR_14: Tetratricopep 98.6 1.1E-07 2.4E-12 53.7 5.3 44 75-118 1-44 (44)
179 KOG4340 Uncharacterized conser 98.6 1.7E-06 3.7E-11 68.1 12.9 129 3-131 40-200 (459)
180 PF06552 TOM20_plant: Plant sp 98.6 3.4E-06 7.4E-11 61.7 13.3 69 57-125 7-85 (186)
181 KOG4234 TPR repeat-containing 98.6 1.6E-06 3.4E-11 64.4 11.4 100 42-143 96-200 (271)
182 PF13431 TPR_17: Tetratricopep 98.6 8.1E-08 1.8E-12 50.8 3.2 32 64-95 2-33 (34)
183 KOG1308 Hsp70-interacting prot 98.5 4.7E-08 1E-12 77.9 3.1 98 9-106 116-213 (377)
184 COG1729 Uncharacterized protei 98.5 1.9E-06 4E-11 67.3 11.6 88 44-131 144-237 (262)
185 COG4700 Uncharacterized protei 98.5 8E-06 1.7E-10 60.0 13.6 121 9-130 91-214 (251)
186 COG0457 NrfG FOG: TPR repeat [ 98.5 2.5E-05 5.5E-10 60.2 17.8 194 7-212 59-268 (291)
187 COG0457 NrfG FOG: TPR repeat [ 98.5 6.1E-05 1.3E-09 58.0 19.9 223 11-244 26-268 (291)
188 PF04733 Coatomer_E: Coatomer 98.5 1.2E-06 2.7E-11 70.8 9.9 102 11-112 169-273 (290)
189 PF00515 TPR_1: Tetratricopept 98.5 3.2E-07 6.9E-12 48.7 4.3 32 42-73 2-33 (34)
190 PLN03077 Protein ECB2; Provisi 98.5 2.3E-05 4.9E-10 73.5 19.1 213 6-236 454-716 (857)
191 PF13431 TPR_17: Tetratricopep 98.5 2E-07 4.2E-12 49.3 3.0 34 29-62 1-34 (34)
192 COG4700 Uncharacterized protei 98.4 7.3E-05 1.6E-09 55.1 16.8 118 13-131 62-182 (251)
193 KOG4555 TPR repeat-containing 98.4 7E-06 1.5E-10 56.7 10.4 88 43-130 45-136 (175)
194 PF00515 TPR_1: Tetratricopept 98.4 6.4E-07 1.4E-11 47.5 4.2 34 75-108 1-34 (34)
195 PF07719 TPR_2: Tetratricopept 98.4 1.1E-06 2.3E-11 46.6 5.0 31 43-73 3-33 (34)
196 KOG2610 Uncharacterized conser 98.4 1.6E-05 3.5E-10 63.7 13.5 122 11-132 107-232 (491)
197 PRK04841 transcriptional regul 98.4 4.5E-05 9.8E-10 71.9 19.0 56 189-245 700-764 (903)
198 KOG4642 Chaperone-dependent E3 98.4 1E-06 2.2E-11 67.0 6.1 89 44-132 13-101 (284)
199 PRK04841 transcriptional regul 98.4 9.4E-05 2E-09 69.8 20.4 227 7-242 452-721 (903)
200 PF07719 TPR_2: Tetratricopept 98.3 1.5E-06 3.2E-11 46.0 4.9 34 75-108 1-34 (34)
201 PF13512 TPR_18: Tetratricopep 98.3 2.7E-05 5.9E-10 55.2 12.2 82 39-120 8-95 (142)
202 COG4785 NlpI Lipoprotein NlpI, 98.3 3.9E-05 8.4E-10 57.9 13.5 172 2-185 94-266 (297)
203 KOG1941 Acetylcholine receptor 98.3 2.8E-05 6E-10 63.0 13.2 120 9-128 124-265 (518)
204 COG3071 HemY Uncharacterized e 98.3 0.00083 1.8E-08 55.2 21.0 239 8-246 119-396 (400)
205 PF05843 Suf: Suppressor of fo 98.3 5.1E-05 1.1E-09 61.3 14.1 124 9-132 3-130 (280)
206 PF03704 BTAD: Bacterial trans 98.3 7.9E-05 1.7E-09 54.0 13.9 94 9-102 8-123 (146)
207 COG3118 Thioredoxin domain-con 98.2 9.9E-05 2.1E-09 58.4 14.6 121 6-131 133-258 (304)
208 KOG1915 Cell cycle control pro 98.2 0.00027 5.9E-09 59.4 16.7 196 33-245 65-277 (677)
209 KOG2047 mRNA splicing factor [ 98.2 0.00061 1.3E-08 59.3 19.2 100 3-104 345-454 (835)
210 KOG1941 Acetylcholine receptor 98.2 6.9E-05 1.5E-09 60.8 12.5 125 7-131 83-228 (518)
211 KOG2047 mRNA splicing factor [ 98.1 0.0012 2.6E-08 57.5 20.4 126 8-133 388-535 (835)
212 COG4105 ComL DNA uptake lipopr 98.1 0.0026 5.6E-08 49.6 20.6 72 40-111 33-107 (254)
213 PF04184 ST7: ST7 protein; In 98.1 0.00016 3.5E-09 61.1 13.9 121 11-133 172-319 (539)
214 PF13281 DUF4071: Domain of un 98.1 0.00084 1.8E-08 55.7 17.8 117 7-124 141-274 (374)
215 KOG2796 Uncharacterized conser 98.1 7.8E-05 1.7E-09 57.9 10.9 106 3-108 208-319 (366)
216 PF13181 TPR_8: Tetratricopept 98.0 1.1E-05 2.5E-10 42.5 4.2 30 43-72 3-32 (34)
217 KOG2796 Uncharacterized conser 98.0 0.00021 4.5E-09 55.7 12.3 123 9-131 179-308 (366)
218 KOG2053 Mitochondrial inherita 98.0 0.00022 4.8E-09 64.0 13.7 112 15-127 17-128 (932)
219 KOG1310 WD40 repeat protein [G 98.0 3.4E-05 7.4E-10 65.3 8.2 107 4-110 371-480 (758)
220 PF13181 TPR_8: Tetratricopept 98.0 1.5E-05 3.2E-10 42.1 4.1 33 76-108 2-34 (34)
221 KOG0551 Hsp90 co-chaperone CNS 97.9 0.00065 1.4E-08 54.6 13.7 91 41-131 81-175 (390)
222 KOG1586 Protein required for f 97.9 0.0042 9.2E-08 47.7 17.4 124 8-132 35-177 (288)
223 KOG2471 TPR repeat-containing 97.9 5.6E-05 1.2E-09 63.5 7.8 119 5-123 238-383 (696)
224 KOG3081 Vesicle coat complex C 97.9 0.00052 1.1E-08 53.5 12.2 120 7-128 137-260 (299)
225 KOG1308 Hsp70-interacting prot 97.9 1.1E-05 2.4E-10 64.7 3.2 108 51-158 124-231 (377)
226 KOG1585 Protein required for f 97.9 0.007 1.5E-07 46.9 17.8 170 8-184 32-218 (308)
227 KOG3081 Vesicle coat complex C 97.8 0.00075 1.6E-08 52.6 12.6 118 8-132 109-230 (299)
228 KOG1586 Protein required for f 97.8 0.0035 7.6E-08 48.1 15.8 105 7-111 73-190 (288)
229 KOG0545 Aryl-hydrocarbon recep 97.8 0.00035 7.5E-09 53.8 10.4 89 41-129 178-284 (329)
230 COG3898 Uncharacterized membra 97.8 0.005 1.1E-07 50.8 17.5 226 11-248 88-331 (531)
231 KOG4507 Uncharacterized conser 97.7 0.0003 6.5E-09 60.6 9.8 104 17-120 617-721 (886)
232 KOG2396 HAT (Half-A-TPR) repea 97.7 0.00073 1.6E-08 57.2 11.8 95 24-118 88-183 (568)
233 KOG1070 rRNA processing protei 97.7 0.002 4.4E-08 60.8 15.6 119 10-128 1533-1653(1710)
234 PRK10941 hypothetical protein; 97.7 0.0008 1.7E-08 53.7 11.6 77 42-118 182-258 (269)
235 PF10300 DUF3808: Protein of u 97.7 0.00083 1.8E-08 58.3 12.7 106 20-125 246-356 (468)
236 PF04781 DUF627: Protein of un 97.7 0.00081 1.8E-08 45.4 9.7 92 13-104 2-107 (111)
237 KOG3824 Huntingtin interacting 97.7 0.00027 5.9E-09 56.2 8.5 75 44-118 119-193 (472)
238 PF14853 Fis1_TPR_C: Fis1 C-te 97.7 0.00051 1.1E-08 40.0 7.4 43 76-118 2-44 (53)
239 PF03704 BTAD: Bacterial trans 97.7 0.00051 1.1E-08 49.7 9.3 63 7-69 62-124 (146)
240 PF10300 DUF3808: Protein of u 97.7 0.00059 1.3E-08 59.2 10.8 101 4-104 264-376 (468)
241 PF13174 TPR_6: Tetratricopept 97.7 0.00011 2.3E-09 38.3 4.0 31 77-107 2-32 (33)
242 KOG1070 rRNA processing protei 97.6 0.0069 1.5E-07 57.4 17.7 129 2-131 1453-1586(1710)
243 PF13174 TPR_6: Tetratricopept 97.6 0.00012 2.6E-09 38.1 4.0 31 43-73 2-32 (33)
244 PF05843 Suf: Suppressor of fo 97.6 0.0017 3.7E-08 52.6 12.4 106 6-111 34-143 (280)
245 KOG3824 Huntingtin interacting 97.6 0.00033 7.2E-09 55.7 7.9 80 5-84 114-193 (472)
246 COG2976 Uncharacterized protei 97.6 0.0017 3.6E-08 48.4 11.0 95 10-106 92-190 (207)
247 PRK10941 hypothetical protein; 97.6 0.0019 4E-08 51.6 11.5 75 9-83 183-257 (269)
248 KOG0376 Serine-threonine phosp 97.6 9.1E-05 2E-09 62.2 4.2 86 46-131 9-94 (476)
249 PF13176 TPR_7: Tetratricopept 97.6 0.00019 4.2E-09 38.3 4.1 23 44-66 2-24 (36)
250 PF09613 HrpB1_HrpK: Bacterial 97.5 0.0043 9.4E-08 45.0 12.0 110 5-116 8-117 (160)
251 KOG2053 Mitochondrial inherita 97.5 0.0029 6.3E-08 57.1 13.0 118 4-122 40-158 (932)
252 PF14561 TPR_20: Tetratricopep 97.5 0.0016 3.5E-08 42.8 8.4 65 60-124 7-73 (90)
253 PF14561 TPR_20: Tetratricopep 97.4 0.0028 6.1E-08 41.6 9.3 66 26-91 7-74 (90)
254 PF13176 TPR_7: Tetratricopept 97.4 0.0003 6.6E-09 37.5 3.9 28 77-104 1-28 (36)
255 PF08424 NRDE-2: NRDE-2, neces 97.4 0.019 4E-07 47.5 16.0 93 27-119 5-109 (321)
256 KOG3617 WD40 and TPR repeat-co 97.4 0.011 2.3E-07 53.5 15.0 187 19-238 740-939 (1416)
257 PF12968 DUF3856: Domain of Un 97.4 0.02 4.3E-07 39.2 12.8 95 10-104 12-129 (144)
258 smart00028 TPR Tetratricopepti 97.4 0.00037 8.1E-09 35.4 4.0 30 43-72 3-32 (34)
259 KOG3617 WD40 and TPR repeat-co 97.3 0.12 2.6E-06 47.1 21.8 99 42-140 859-998 (1416)
260 KOG3364 Membrane protein invol 97.3 0.018 3.9E-07 40.3 11.9 80 39-118 30-114 (149)
261 smart00028 TPR Tetratricopepti 97.3 0.00062 1.3E-08 34.6 3.9 33 76-108 2-34 (34)
262 PF15015 NYD-SP12_N: Spermatog 97.3 0.0024 5.3E-08 53.0 8.9 93 9-101 178-288 (569)
263 PF14853 Fis1_TPR_C: Fis1 C-te 97.2 0.0024 5.2E-08 37.2 6.5 40 42-81 2-41 (53)
264 KOG2610 Uncharacterized conser 97.2 0.031 6.7E-07 45.5 14.6 129 4-132 134-270 (491)
265 PF02259 FAT: FAT domain; Int 97.2 0.029 6.3E-07 46.9 14.9 120 3-122 142-305 (352)
266 COG4976 Predicted methyltransf 97.1 0.00085 1.8E-08 51.2 4.9 57 18-74 6-62 (287)
267 COG5191 Uncharacterized conser 97.1 0.0012 2.6E-08 52.7 5.9 89 29-117 95-184 (435)
268 PF04184 ST7: ST7 protein; In 97.1 0.016 3.4E-07 49.6 12.5 57 11-67 263-321 (539)
269 COG3118 Thioredoxin domain-con 97.1 0.018 4E-07 45.9 12.1 131 41-186 134-266 (304)
270 KOG2300 Uncharacterized conser 97.1 0.16 3.4E-06 43.6 18.1 131 2-132 2-150 (629)
271 KOG4814 Uncharacterized conser 97.0 0.01 2.2E-07 52.0 10.8 96 9-104 356-457 (872)
272 TIGR02561 HrpB1_HrpK type III 97.0 0.031 6.7E-07 40.0 11.1 86 7-92 10-95 (153)
273 KOG1585 Protein required for f 96.9 0.14 3E-06 40.0 17.6 65 41-105 31-101 (308)
274 PF09986 DUF2225: Uncharacteri 96.9 0.02 4.3E-07 44.3 10.5 88 19-106 89-196 (214)
275 PF04910 Tcf25: Transcriptiona 96.9 0.16 3.4E-06 42.8 16.6 153 33-193 32-230 (360)
276 KOG0546 HSP90 co-chaperone CPR 96.9 0.0032 7E-08 51.1 6.3 118 8-125 223-359 (372)
277 COG4976 Predicted methyltransf 96.8 0.0024 5.2E-08 48.9 4.9 59 50-108 4-62 (287)
278 KOG4507 Uncharacterized conser 96.8 0.041 8.8E-07 48.0 12.3 108 11-118 216-326 (886)
279 PF08424 NRDE-2: NRDE-2, neces 96.7 0.082 1.8E-06 43.7 13.9 102 3-104 15-131 (321)
280 PF09613 HrpB1_HrpK: Bacterial 96.7 0.043 9.2E-07 39.9 10.5 85 41-125 10-94 (160)
281 KOG0530 Protein farnesyltransf 96.7 0.083 1.8E-06 41.5 12.4 113 19-131 55-169 (318)
282 PF10602 RPN7: 26S proteasome 96.6 0.05 1.1E-06 40.8 10.6 95 8-102 37-140 (177)
283 COG2912 Uncharacterized conser 96.5 0.03 6.4E-07 44.3 9.2 77 42-118 182-258 (269)
284 KOG1258 mRNA processing protei 96.5 0.32 6.9E-06 42.7 16.0 125 5-129 295-420 (577)
285 PF04781 DUF627: Protein of un 96.5 0.079 1.7E-06 35.9 9.7 82 47-128 2-97 (111)
286 KOG2471 TPR repeat-containing 96.4 0.0056 1.2E-07 52.0 5.0 80 9-88 285-382 (696)
287 KOG2300 Uncharacterized conser 96.4 0.4 8.7E-06 41.2 15.4 190 18-213 286-518 (629)
288 COG3914 Spy Predicted O-linked 96.3 0.11 2.5E-06 45.3 12.1 105 14-118 74-185 (620)
289 PF13374 TPR_10: Tetratricopep 96.3 0.013 2.8E-07 31.9 4.5 29 42-70 3-31 (42)
290 PF02259 FAT: FAT domain; Int 96.2 0.11 2.4E-06 43.4 11.5 102 6-107 183-341 (352)
291 COG2976 Uncharacterized protei 96.0 0.43 9.4E-06 35.9 14.0 87 43-131 91-181 (207)
292 COG5191 Uncharacterized conser 96.0 0.015 3.3E-07 46.6 5.2 77 4-80 104-181 (435)
293 PRK13184 pknD serine/threonine 96.0 0.53 1.1E-05 44.5 15.8 104 14-118 482-595 (932)
294 KOG2396 HAT (Half-A-TPR) repea 96.0 0.071 1.5E-06 45.6 9.2 77 4-80 102-179 (568)
295 KOG1839 Uncharacterized protei 95.9 0.21 4.6E-06 47.7 12.9 128 5-132 930-1080(1236)
296 KOG1550 Extracellular protein 95.9 0.22 4.7E-06 44.6 12.8 112 6-121 243-372 (552)
297 PF10579 Rapsyn_N: Rapsyn N-te 95.9 0.14 3E-06 32.3 8.0 61 7-67 6-69 (80)
298 KOG0985 Vesicle coat protein c 95.9 0.89 1.9E-05 42.8 16.0 102 13-131 1054-1155(1666)
299 PF13374 TPR_10: Tetratricopep 95.8 0.029 6.4E-07 30.5 4.5 30 7-36 2-31 (42)
300 KOG4151 Myosin assembly protei 95.7 0.076 1.7E-06 47.8 8.9 118 7-124 53-176 (748)
301 COG2912 Uncharacterized conser 95.7 0.13 2.8E-06 40.8 9.3 71 12-82 186-256 (269)
302 KOG0530 Protein farnesyltransf 95.7 0.2 4.4E-06 39.4 10.0 112 3-114 73-186 (318)
303 PF07720 TPR_3: Tetratricopept 95.7 0.051 1.1E-06 28.8 4.9 31 77-107 3-35 (36)
304 COG3898 Uncharacterized membra 95.6 1.1 2.4E-05 37.6 19.3 98 6-104 119-217 (531)
305 KOG0529 Protein geranylgeranyl 95.6 0.27 5.8E-06 41.2 11.1 102 19-120 87-194 (421)
306 KOG3364 Membrane protein invol 95.6 0.22 4.9E-06 35.0 9.0 74 7-80 32-110 (149)
307 COG0790 FOG: TPR repeat, SEL1 95.6 0.76 1.7E-05 37.3 14.0 108 9-120 75-198 (292)
308 PF10516 SHNi-TPR: SHNi-TPR; 95.6 0.031 6.7E-07 30.0 3.8 28 43-70 3-30 (38)
309 PF13281 DUF4071: Domain of un 95.6 1.2 2.6E-05 37.5 20.3 83 40-122 140-230 (374)
310 TIGR02561 HrpB1_HrpK type III 95.6 0.28 6E-06 35.2 9.6 84 42-125 11-94 (153)
311 PF12862 Apc5: Anaphase-promot 95.5 0.085 1.8E-06 34.9 6.6 54 17-70 8-70 (94)
312 PF08631 SPO22: Meiosis protei 95.5 1.1 2.3E-05 36.4 21.0 100 7-106 35-152 (278)
313 COG3629 DnrI DNA-binding trans 95.5 0.13 2.7E-06 41.3 8.5 80 23-104 137-216 (280)
314 PF07720 TPR_3: Tetratricopept 95.5 0.071 1.5E-06 28.2 4.9 30 43-72 3-34 (36)
315 PF10373 EST1_DNA_bind: Est1 D 95.5 0.086 1.9E-06 42.5 7.9 62 26-87 1-62 (278)
316 PF07079 DUF1347: Protein of u 95.4 0.61 1.3E-05 39.8 12.4 123 7-132 379-518 (549)
317 PF10516 SHNi-TPR: SHNi-TPR; 95.3 0.038 8.3E-07 29.6 3.6 29 76-104 2-30 (38)
318 COG5159 RPN6 26S proteasome re 95.3 0.71 1.5E-05 37.0 11.9 122 11-132 7-188 (421)
319 PF12862 Apc5: Anaphase-promot 95.2 0.15 3.3E-06 33.7 7.1 57 50-106 7-72 (94)
320 KOG1550 Extracellular protein 95.2 0.59 1.3E-05 41.9 12.8 107 9-121 290-408 (552)
321 KOG1839 Uncharacterized protei 95.2 0.34 7.5E-06 46.3 11.4 129 3-131 969-1121(1236)
322 PF10373 EST1_DNA_bind: Est1 D 95.1 0.12 2.6E-06 41.6 7.7 62 60-121 1-62 (278)
323 KOG1914 mRNA cleavage and poly 95.1 1.7 3.8E-05 38.0 14.5 73 31-104 10-82 (656)
324 PF10602 RPN7: 26S proteasome 95.1 0.43 9.3E-06 35.8 10.0 64 41-104 36-102 (177)
325 PF09986 DUF2225: Uncharacteri 94.9 0.48 1E-05 36.7 10.0 78 6-83 117-208 (214)
326 COG1747 Uncharacterized N-term 94.9 2.4 5.2E-05 37.0 16.4 92 9-103 68-159 (711)
327 PF10579 Rapsyn_N: Rapsyn N-te 94.6 0.59 1.3E-05 29.5 7.9 56 44-99 9-67 (80)
328 KOG1310 WD40 repeat protein [G 94.6 0.2 4.4E-06 43.4 7.7 81 52-132 385-468 (758)
329 COG3914 Spy Predicted O-linked 94.6 1.6 3.4E-05 38.6 13.0 105 24-128 48-161 (620)
330 PF11207 DUF2989: Protein of u 94.6 0.79 1.7E-05 34.8 10.1 74 54-128 119-197 (203)
331 PF15015 NYD-SP12_N: Spermatog 94.5 0.24 5.2E-06 41.7 7.9 84 47-130 182-283 (569)
332 KOG4814 Uncharacterized conser 94.4 0.5 1.1E-05 42.0 9.8 88 43-130 356-449 (872)
333 COG2909 MalT ATP-dependent tra 94.3 4.5 9.7E-05 37.7 18.9 124 6-129 414-557 (894)
334 PF08631 SPO22: Meiosis protei 94.2 2.4 5.2E-05 34.3 13.1 112 17-128 3-140 (278)
335 COG4455 ImpE Protein of avirul 94.2 0.67 1.4E-05 35.7 8.9 63 13-75 7-69 (273)
336 PF07721 TPR_4: Tetratricopept 94.1 0.094 2E-06 25.4 3.0 17 46-62 6-22 (26)
337 COG3947 Response regulator con 94.1 0.27 5.9E-06 39.4 7.0 61 42-102 280-340 (361)
338 KOG3616 Selective LIM binding 94.0 4.8 0.0001 36.9 18.0 124 111-236 663-790 (1636)
339 KOG3616 Selective LIM binding 94.0 1 2.2E-05 41.0 11.0 60 42-101 662-732 (1636)
340 PF07721 TPR_4: Tetratricopept 94.0 0.097 2.1E-06 25.3 2.9 24 76-99 2-25 (26)
341 COG3629 DnrI DNA-binding trans 93.8 0.53 1.1E-05 37.9 8.3 74 57-132 137-210 (280)
342 PF14863 Alkyl_sulf_dimr: Alky 93.8 0.3 6.5E-06 35.0 6.2 48 42-89 71-118 (141)
343 KOG0529 Protein geranylgeranyl 93.6 1.2 2.6E-05 37.5 10.2 114 2-115 104-235 (421)
344 PF12968 DUF3856: Domain of Un 93.3 1.9 4.1E-05 29.8 10.5 60 43-102 9-82 (144)
345 KOG1464 COP9 signalosome, subu 93.3 3.6 7.8E-05 33.0 13.6 50 20-69 40-93 (440)
346 KOG1914 mRNA cleavage and poly 93.0 6 0.00013 34.9 17.7 117 2-120 15-139 (656)
347 COG3947 Response regulator con 92.9 0.62 1.3E-05 37.4 7.2 55 77-131 281-335 (361)
348 PF04910 Tcf25: Transcriptiona 92.7 2.6 5.7E-05 35.5 11.3 101 9-109 105-227 (360)
349 KOG3807 Predicted membrane pro 92.7 5 0.00011 33.1 15.0 95 10-106 187-306 (556)
350 smart00386 HAT HAT (Half-A-TPR 92.6 0.45 9.8E-06 23.8 4.5 28 90-117 2-29 (33)
351 COG0790 FOG: TPR repeat, SEL1 92.5 4.2 9.2E-05 33.0 12.2 103 16-122 50-161 (292)
352 PRK15180 Vi polysaccharide bio 92.3 1.5 3.3E-05 37.8 9.2 97 16-112 298-394 (831)
353 KOG2422 Uncharacterized conser 92.2 8 0.00017 34.3 17.1 101 20-120 251-388 (665)
354 smart00386 HAT HAT (Half-A-TPR 92.1 0.47 1E-05 23.7 4.2 27 22-48 2-28 (33)
355 PRK15180 Vi polysaccharide bio 92.0 0.63 1.4E-05 40.1 6.6 105 4-108 320-424 (831)
356 KOG1258 mRNA processing protei 91.9 8 0.00017 34.4 13.3 109 11-119 370-485 (577)
357 PF11207 DUF2989: Protein of u 91.9 3.3 7.1E-05 31.6 9.7 72 22-95 121-198 (203)
358 PRK15490 Vi polysaccharide bio 91.6 5.8 0.00013 35.5 12.3 88 15-107 16-103 (578)
359 PF10255 Paf67: RNA polymerase 91.5 0.44 9.5E-06 40.4 5.3 61 43-103 124-192 (404)
360 KOG0890 Protein kinase of the 91.2 21 0.00046 37.3 18.0 84 10-93 1452-1536(2382)
361 KOG2041 WD40 repeat protein [G 91.2 6.3 0.00014 35.9 12.0 27 75-101 796-822 (1189)
362 PF10255 Paf67: RNA polymerase 91.1 0.52 1.1E-05 40.0 5.3 60 9-69 124-192 (404)
363 PF11817 Foie-gras_1: Foie gra 90.9 3.9 8.5E-05 32.5 10.0 77 24-100 155-243 (247)
364 cd02682 MIT_AAA_Arch MIT: doma 90.8 2.8 6.1E-05 26.4 8.0 16 95-110 33-48 (75)
365 KOG2114 Vacuolar assembly/sort 90.4 9.2 0.0002 35.5 12.5 162 13-181 340-515 (933)
366 COG4455 ImpE Protein of avirul 90.3 4.1 8.9E-05 31.5 8.9 70 49-118 9-81 (273)
367 TIGR03504 FimV_Cterm FimV C-te 90.3 0.78 1.7E-05 25.5 3.9 25 79-103 3-27 (44)
368 PF04053 Coatomer_WDAD: Coatom 90.2 5 0.00011 34.9 10.7 100 16-132 270-370 (443)
369 KOG0985 Vesicle coat protein c 90.2 18 0.00039 34.8 16.0 61 39-104 1102-1162(1666)
370 KOG0890 Protein kinase of the 90.2 18 0.0004 37.8 15.3 116 5-122 1668-1802(2382)
371 KOG2041 WD40 repeat protein [G 90.1 15 0.00032 33.7 17.1 81 8-100 797-877 (1189)
372 COG4649 Uncharacterized protei 89.9 6.7 0.00014 29.3 12.5 124 10-133 61-191 (221)
373 PF10345 Cohesin_load: Cohesin 89.5 17 0.00036 33.3 15.8 108 3-111 55-177 (608)
374 TIGR03504 FimV_Cterm FimV C-te 89.3 1.1 2.4E-05 24.9 4.0 25 45-69 3-27 (44)
375 PF14863 Alkyl_sulf_dimr: Alky 89.2 2.3 4.9E-05 30.5 6.6 55 74-128 69-123 (141)
376 PF04053 Coatomer_WDAD: Coatom 88.5 16 0.00035 31.8 13.5 94 10-127 298-391 (443)
377 KOG2581 26S proteasome regulat 88.4 11 0.00024 32.0 10.7 102 8-109 170-281 (493)
378 PF07079 DUF1347: Protein of u 87.8 17 0.00037 31.5 18.0 98 7-104 6-108 (549)
379 KOG0686 COP9 signalosome, subu 87.4 7 0.00015 33.2 9.1 111 8-118 151-280 (466)
380 PRK13184 pknD serine/threonine 87.4 6.4 0.00014 37.6 10.0 102 8-110 513-626 (932)
381 KOG0546 HSP90 co-chaperone CPR 87.1 0.66 1.4E-05 38.2 3.1 76 11-86 279-354 (372)
382 PF11817 Foie-gras_1: Foie gra 86.7 5.7 0.00012 31.5 8.3 61 8-68 179-245 (247)
383 PF13226 DUF4034: Domain of un 86.7 12 0.00025 30.3 9.8 114 13-126 6-150 (277)
384 PF04212 MIT: MIT (microtubule 86.5 2.6 5.6E-05 25.9 4.9 29 7-35 5-33 (69)
385 cd02682 MIT_AAA_Arch MIT: doma 86.2 6.4 0.00014 24.8 8.2 11 66-76 38-48 (75)
386 PF10345 Cohesin_load: Cohesin 85.2 28 0.00061 31.8 12.8 91 9-99 303-428 (608)
387 COG2909 MalT ATP-dependent tra 85.0 35 0.00076 32.2 16.2 122 7-128 458-596 (894)
388 cd02680 MIT_calpain7_2 MIT: do 84.9 2.5 5.3E-05 26.6 4.2 14 55-68 20-33 (75)
389 PF09797 NatB_MDM20: N-acetylt 84.8 9.6 0.00021 32.2 9.2 41 59-99 201-241 (365)
390 PF10952 DUF2753: Protein of u 83.8 10 0.00022 26.5 7.0 56 9-64 3-73 (140)
391 KOG3783 Uncharacterized conser 83.8 30 0.00065 30.6 11.4 66 43-108 451-524 (546)
392 PF12854 PPR_1: PPR repeat 83.5 3.6 7.8E-05 21.2 3.9 26 41-66 7-32 (34)
393 PF09670 Cas_Cas02710: CRISPR- 82.9 29 0.00062 29.6 13.2 62 9-70 133-198 (379)
394 cd02681 MIT_calpain7_1 MIT: do 82.7 3.3 7.1E-05 26.2 4.2 17 87-103 18-34 (76)
395 PF12854 PPR_1: PPR repeat 82.5 4.9 0.00011 20.7 4.2 27 74-100 6-32 (34)
396 PF04190 DUF410: Protein of un 82.4 17 0.00037 29.2 9.2 27 5-31 88-114 (260)
397 cd02681 MIT_calpain7_1 MIT: do 82.3 4.3 9.2E-05 25.6 4.6 27 9-35 8-34 (76)
398 cd02683 MIT_1 MIT: domain cont 81.3 5.2 0.00011 25.3 4.8 26 9-34 8-33 (77)
399 PF09205 DUF1955: Domain of un 80.7 18 0.00039 25.8 7.5 55 50-104 95-149 (161)
400 smart00299 CLH Clathrin heavy 80.5 18 0.00038 25.6 10.2 50 15-65 15-64 (140)
401 COG5536 BET4 Protein prenyltra 80.2 20 0.00042 29.0 8.4 96 23-118 90-193 (328)
402 cd02679 MIT_spastin MIT: domai 80.1 4.4 9.5E-05 25.8 4.1 33 56-103 4-36 (79)
403 COG5107 RNA14 Pre-mRNA 3'-end 79.8 41 0.00088 29.4 12.0 149 30-183 31-188 (660)
404 COG4941 Predicted RNA polymera 79.5 25 0.00055 29.2 9.0 95 22-117 311-407 (415)
405 PF07219 HemY_N: HemY protein 78.8 17 0.00038 24.6 7.2 24 47-70 65-88 (108)
406 KOG1463 26S proteasome regulat 78.7 38 0.00082 28.3 13.5 173 12-194 133-325 (411)
407 PF11846 DUF3366: Domain of un 78.6 12 0.00027 28.2 7.0 48 58-106 128-175 (193)
408 PF01535 PPR: PPR repeat; Int 78.2 4.6 0.0001 19.6 3.2 21 47-67 6-26 (31)
409 PF13041 PPR_2: PPR repeat fam 78.0 7.9 0.00017 21.7 4.5 29 42-70 4-32 (50)
410 KOG1464 COP9 signalosome, subu 77.9 10 0.00022 30.5 6.2 51 54-104 40-94 (440)
411 cd02680 MIT_calpain7_2 MIT: do 77.7 5.6 0.00012 25.0 4.0 31 6-36 5-35 (75)
412 smart00745 MIT Microtubule Int 76.4 8.6 0.00019 24.1 4.8 16 54-69 21-36 (77)
413 PF05053 Menin: Menin; InterP 76.2 58 0.0013 29.2 11.7 90 14-118 264-367 (618)
414 cd02678 MIT_VPS4 MIT: domain c 76.1 9 0.00019 24.0 4.7 26 9-34 8-33 (75)
415 KOG4279 Serine/threonine prote 76.0 19 0.00041 33.3 8.1 124 6-131 200-343 (1226)
416 KOG2758 Translation initiation 75.7 37 0.00081 28.1 8.9 78 27-104 115-196 (432)
417 PHA02537 M terminase endonucle 75.6 4.4 9.6E-05 31.7 3.8 92 17-108 93-211 (230)
418 PF02184 HAT: HAT (Half-A-TPR) 75.3 8.6 0.00019 19.7 3.5 16 57-72 3-18 (32)
419 cd02684 MIT_2 MIT: domain cont 75.1 8.2 0.00018 24.3 4.3 16 87-102 18-33 (75)
420 PF02064 MAS20: MAS20 protein 75.1 9.2 0.0002 26.6 4.8 28 12-39 68-95 (121)
421 KOG2581 26S proteasome regulat 75.0 53 0.0012 28.2 11.5 127 53-188 138-279 (493)
422 cd02677 MIT_SNX15 MIT: domain 74.8 5.2 0.00011 25.2 3.3 10 55-64 20-29 (75)
423 KOG2561 Adaptor protein NUB1, 74.3 21 0.00046 30.7 7.5 96 9-104 165-296 (568)
424 PF09205 DUF1955: Domain of un 74.2 29 0.00063 24.8 7.4 117 11-132 6-143 (161)
425 PF13041 PPR_2: PPR repeat fam 73.7 11 0.00023 21.2 4.3 30 7-36 3-32 (50)
426 cd02679 MIT_spastin MIT: domai 72.6 10 0.00023 24.1 4.3 34 22-70 4-37 (79)
427 cd02656 MIT MIT: domain contai 72.2 13 0.00028 23.2 4.8 24 11-34 10-33 (75)
428 PF01239 PPTA: Protein prenylt 71.4 11 0.00024 18.7 4.3 25 27-51 3-27 (31)
429 PF11846 DUF3366: Domain of un 71.3 25 0.00054 26.6 7.0 50 23-73 127-176 (193)
430 cd02684 MIT_2 MIT: domain cont 71.0 13 0.00029 23.3 4.5 16 54-69 19-34 (75)
431 PF15469 Sec5: Exocyst complex 70.5 39 0.00086 25.3 7.9 24 90-113 154-177 (182)
432 PF04212 MIT: MIT (microtubule 70.1 15 0.00033 22.4 4.6 11 54-64 18-28 (69)
433 KOG3783 Uncharacterized conser 69.4 43 0.00094 29.7 8.5 93 24-116 250-344 (546)
434 cd02678 MIT_VPS4 MIT: domain c 69.4 13 0.00028 23.3 4.3 16 87-102 18-33 (75)
435 cd00280 TRFH Telomeric Repeat 69.3 17 0.00036 27.4 5.3 43 49-92 119-161 (200)
436 TIGR00756 PPR pentatricopeptid 69.1 12 0.00027 18.4 4.0 22 47-68 6-27 (35)
437 PF10952 DUF2753: Protein of u 69.0 36 0.00077 23.9 6.4 66 44-109 4-88 (140)
438 PF09670 Cas_Cas02710: CRISPR- 68.8 74 0.0016 27.2 14.0 62 43-104 133-198 (379)
439 KOG1538 Uncharacterized conser 67.2 1.1E+02 0.0023 28.3 11.1 22 11-32 636-657 (1081)
440 cd02677 MIT_SNX15 MIT: domain 67.2 15 0.00032 23.1 4.1 31 6-36 5-35 (75)
441 COG4649 Uncharacterized protei 67.0 52 0.0011 24.8 14.3 108 9-117 96-208 (221)
442 PF13812 PPR_3: Pentatricopept 67.0 14 0.00031 18.3 4.1 24 45-68 5-28 (34)
443 PRK11619 lytic murein transgly 66.9 1E+02 0.0023 28.5 11.0 53 50-102 321-373 (644)
444 COG5536 BET4 Protein prenyltra 66.0 43 0.00093 27.2 7.2 116 4-119 105-237 (328)
445 COG2015 Alkyl sulfatase and re 65.5 22 0.00047 31.1 5.9 46 10-55 455-500 (655)
446 KOG0276 Vesicle coat complex C 65.3 1.1E+02 0.0024 27.9 13.3 51 49-104 645-695 (794)
447 PF12753 Nro1: Nuclear pore co 65.0 13 0.00029 31.4 4.6 31 24-56 335-365 (404)
448 PF06957 COPI_C: Coatomer (COP 62.4 53 0.0011 28.5 7.7 105 6-110 203-335 (422)
449 PF09797 NatB_MDM20: N-acetylt 61.8 25 0.00055 29.7 5.9 42 91-132 199-240 (365)
450 smart00671 SEL1 Sel1-like repe 61.2 20 0.00044 18.0 4.1 11 57-67 21-31 (36)
451 TIGR02710 CRISPR-associated pr 61.0 1.1E+02 0.0023 26.3 12.5 64 3-66 124-196 (380)
452 PF12739 TRAPPC-Trs85: ER-Golg 60.9 1.1E+02 0.0024 26.5 11.8 96 9-104 210-329 (414)
453 KOG0686 COP9 signalosome, subu 60.0 1.1E+02 0.0025 26.3 12.4 101 76-182 151-255 (466)
454 KOG4056 Translocase of outer m 59.2 25 0.00054 25.0 4.4 30 12-41 86-115 (143)
455 KOG0128 RNA-binding protein SA 58.4 1.7E+02 0.0037 27.8 14.5 98 21-119 93-193 (881)
456 PRK15490 Vi polysaccharide bio 58.3 84 0.0018 28.5 8.5 59 5-65 40-98 (578)
457 PF00244 14-3-3: 14-3-3 protei 57.7 93 0.002 24.6 15.7 60 44-103 4-65 (236)
458 PF02064 MAS20: MAS20 protein 57.5 41 0.00088 23.5 5.2 33 78-110 66-98 (121)
459 COG5091 SGT1 Suppressor of G2 56.3 20 0.00044 28.7 4.0 93 16-108 4-112 (368)
460 KOG3807 Predicted membrane pro 56.2 1.2E+02 0.0026 25.4 12.2 89 42-132 185-298 (556)
461 smart00745 MIT Microtubule Int 55.2 36 0.00077 21.2 4.5 15 57-71 5-19 (77)
462 KOG0292 Vesicle coat complex C 54.7 2.1E+02 0.0045 27.6 10.8 107 7-113 991-1122(1202)
463 PF08238 Sel1: Sel1 repeat; I 54.4 29 0.00064 17.8 4.1 10 58-67 25-34 (39)
464 TIGR00985 3a0801s04tom mitocho 54.4 36 0.00078 24.6 4.7 28 46-73 95-123 (148)
465 KOG4014 Uncharacterized conser 53.9 97 0.0021 23.6 9.7 110 5-119 32-154 (248)
466 KOG4563 Cell cycle-regulated h 53.7 42 0.00091 28.3 5.5 60 5-64 39-106 (400)
467 KOG4279 Serine/threonine prote 53.1 62 0.0013 30.3 6.8 76 20-96 256-342 (1226)
468 PF07219 HemY_N: HemY protein 53.0 69 0.0015 21.6 6.8 26 79-104 63-88 (108)
469 PF08311 Mad3_BUB1_I: Mad3/BUB 52.4 79 0.0017 22.1 6.3 44 25-68 81-126 (126)
470 smart00777 Mad3_BUB1_I Mad3/BU 52.3 69 0.0015 22.5 5.8 23 109-131 99-121 (125)
471 PF12583 TPPII_N: Tripeptidyl 51.6 74 0.0016 22.5 5.7 37 51-87 86-122 (139)
472 PF13226 DUF4034: Domain of un 51.3 1.2E+02 0.0027 24.6 7.8 67 26-92 62-150 (277)
473 KOG4563 Cell cycle-regulated h 50.8 41 0.0009 28.3 5.1 57 42-98 42-106 (400)
474 cd02683 MIT_1 MIT: domain cont 49.9 64 0.0014 20.3 7.4 15 94-108 32-46 (77)
475 cd00280 TRFH Telomeric Repeat 49.8 1.1E+02 0.0025 23.2 8.9 42 80-122 116-157 (200)
476 KOG2114 Vacuolar assembly/sort 49.5 1.1E+02 0.0024 28.9 8.0 32 5-36 366-397 (933)
477 PF12583 TPPII_N: Tripeptidyl 48.8 95 0.0021 22.0 6.0 38 82-119 83-120 (139)
478 PF04190 DUF410: Protein of un 48.3 1.4E+02 0.0031 23.9 11.7 94 8-101 11-116 (260)
479 KOG1497 COP9 signalosome, subu 48.1 1.6E+02 0.0035 24.5 11.5 94 9-103 105-212 (399)
480 PF05053 Menin: Menin; InterP 46.8 1.2E+02 0.0026 27.4 7.4 63 7-69 277-346 (618)
481 cd00215 PTS_IIA_lac PTS_IIA, P 46.5 38 0.00083 22.5 3.6 30 5-34 13-42 (97)
482 KOG2997 F-box protein FBX9 [Ge 45.7 52 0.0011 27.2 4.8 41 5-45 17-57 (366)
483 TIGR00823 EIIA-LAC phosphotran 45.5 40 0.00088 22.5 3.6 29 5-33 15-43 (99)
484 KOG0276 Vesicle coat complex C 45.4 1.9E+02 0.0041 26.5 8.5 34 37-70 662-695 (794)
485 KOG4151 Myosin assembly protei 45.0 85 0.0018 29.3 6.5 70 10-79 94-165 (748)
486 PRK11619 lytic murein transgly 44.4 2.7E+02 0.0058 25.9 14.4 115 13-130 318-460 (644)
487 KOG3677 RNA polymerase I-assoc 43.6 1.1E+02 0.0024 26.5 6.5 107 9-119 237-353 (525)
488 PRK09591 celC cellobiose phosp 42.4 48 0.001 22.4 3.6 28 6-33 19-46 (104)
489 PF02255 PTS_IIA: PTS system, 42.4 45 0.00097 22.1 3.5 30 5-34 12-41 (96)
490 PF08626 TRAPPC9-Trs120: Trans 41.8 3.9E+02 0.0084 27.1 11.9 122 7-128 242-464 (1185)
491 KOG0739 AAA+-type ATPase [Post 41.1 2.1E+02 0.0046 23.8 7.8 14 24-37 8-21 (439)
492 PF04348 LppC: LppC putative l 41.0 9 0.00019 34.3 0.0 100 5-104 22-127 (536)
493 PF10858 DUF2659: Protein of u 40.7 1.5E+02 0.0033 22.1 9.4 91 13-103 99-199 (220)
494 PF12753 Nro1: Nuclear pore co 40.0 60 0.0013 27.7 4.5 11 91-101 334-344 (404)
495 COG2015 Alkyl sulfatase and re 39.6 1.8E+02 0.0039 25.9 7.3 50 78-127 455-504 (655)
496 PF04840 Vps16_C: Vps16, C-ter 39.4 2.3E+02 0.0049 23.6 9.2 114 10-140 180-293 (319)
497 PRK10454 PTS system N,N'-diace 39.0 56 0.0012 22.5 3.6 30 40-69 30-59 (115)
498 PF07163 Pex26: Pex26 protein; 38.9 2.2E+02 0.0047 23.3 11.0 122 10-132 38-181 (309)
499 PF08969 USP8_dimer: USP8 dime 38.8 89 0.0019 21.3 4.7 24 45-68 42-65 (115)
500 COG4941 Predicted RNA polymera 38.5 2.4E+02 0.0053 23.8 7.9 70 13-82 335-406 (415)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.96 E-value=3.5e-28 Score=202.63 Aligned_cols=250 Identities=15% Similarity=0.196 Sum_probs=159.1
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 82 (268)
.|.-+-+|.++|-++..+|+...||..|.+|++++|...++|+++|.+|..++.++.|+.+|.+|+.+.|+++.++.++|
T Consensus 214 qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla 293 (966)
T KOG4626|consen 214 QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLA 293 (966)
T ss_pred CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceE
Confidence 34444455555555555566666666666666666655566666666665555555555555555555555555555555
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhh-----hhhHH----------------Hh
Q 024419 83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENI-----RSNVD----------------MV 141 (268)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~-----~~~~~----------------~~ 141 (268)
.+|+.+|..+.||.+|++++++.|+.++++.+++..+...|+..+|...... ....+ ..
T Consensus 294 ~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A 373 (966)
T KOG4626|consen 294 CIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEA 373 (966)
T ss_pred EEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHH
Confidence 5555555555555555555555555555555555555555555555433210 00000 00
Q ss_pred hhHHHHHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH----------HHHHhhhhhhhHhhhhHHhcCCc
Q 024419 142 QHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDK 211 (268)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~~ 211 (268)
..+-....++.+.+..+....+.++..++.+++|+.+|..++.+.|. .|-.+|+...|++.|.+++.++|
T Consensus 374 ~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nP 453 (966)
T KOG4626|consen 374 TRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINP 453 (966)
T ss_pred HHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCc
Confidence 11111222344456666677788888899999999999999999997 46788899999999999999999
Q ss_pred cccCccc-hhHHHHHHHHH--HHHHHHHHhhhhCCCCcccccccc
Q 024419 212 AFESPHT-HGSCFQFLRQY--ADDSFSSAACLVAPKSIISYPQVY 253 (268)
Q Consensus 212 ~~~~~~~-~~~~~~~~~~~--a~~~~~ka~~~~~p~~~~~~~~~~ 253 (268)
.+...+. ++..+.--|.. |+..|+.|+ +++|+...+|-+..
T Consensus 454 t~AeAhsNLasi~kDsGni~~AI~sY~~aL-klkPDfpdA~cNll 497 (966)
T KOG4626|consen 454 TFAEAHSNLASIYKDSGNIPEAIQSYRTAL-KLKPDFPDAYCNLL 497 (966)
T ss_pred HHHHHHhhHHHHhhccCCcHHHHHHHHHHH-ccCCCCchhhhHHH
Confidence 8744433 56666666655 999999999 99999988886643
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.95 E-value=4.4e-28 Score=202.09 Aligned_cols=258 Identities=16% Similarity=0.189 Sum_probs=209.4
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 82 (268)
.|+..-+....|+.+-..|+.++|..+|.+|+..+|..+.+|.++|.++...|+...|+..|++|++++|.+.++|++||
T Consensus 180 nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLG 259 (966)
T KOG4626|consen 180 NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLG 259 (966)
T ss_pred CcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHH
Confidence 57777888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHH-----------------
Q 024419 83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLD----------------- 145 (268)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----------------- 145 (268)
.+|...+.|+.|+.+|.+++.+.|++..++-+++-+|..+|..+-|+...+ ..++..+.+.
T Consensus 260 nV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Yk--ral~~~P~F~~Ay~NlanALkd~G~V~ 337 (966)
T KOG4626|consen 260 NVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYK--RALELQPNFPDAYNNLANALKDKGSVT 337 (966)
T ss_pred HHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHH--HHHhcCCCchHHHhHHHHHHHhccchH
Confidence 999999999999999999999999999999999888888888887765432 2222211111
Q ss_pred ----HHHH--HhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH----------HHHHhhhhhhhHhhhhHHhcC
Q 024419 146 ----EFKS--EMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNV 209 (268)
Q Consensus 146 ----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~ 209 (268)
.+.. .+.....+.....+.++..++.+++|...|.+++++.|. +|...|++++|+..|+.++.+
T Consensus 338 ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI 417 (966)
T KOG4626|consen 338 EAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI 417 (966)
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc
Confidence 1111 122234444566677777889999999999999999987 578889999999999999999
Q ss_pred CccccCccc-hhHHHHHHHHH--HHHHHHHHhhhhCCCCcccccc---cccccccccchh
Q 024419 210 DKAFESPHT-HGSCFQFLRQY--ADDSFSSAACLVAPKSIISYPQ---VYKPICLERSRI 263 (268)
Q Consensus 210 ~~~~~~~~~-~~~~~~~~~~~--a~~~~~ka~~~~~p~~~~~~~~---~~~~~~~~~~~~ 263 (268)
.|.+..... .|..|...|+- |+..|.+|| .++|.-..+..+ +++.-|..-..|
T Consensus 418 ~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI-~~nPt~AeAhsNLasi~kDsGni~~AI 476 (966)
T KOG4626|consen 418 KPTFADALSNMGNTYKEMGDVSAAIQCYTRAI-QINPTFAEAHSNLASIYKDSGNIPEAI 476 (966)
T ss_pred CchHHHHHHhcchHHHHhhhHHHHHHHHHHHH-hcCcHHHHHHhhHHHHhhccCCcHHHH
Confidence 998744333 77888888866 999999999 999976655444 344444433333
No 3
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.93 E-value=5.4e-24 Score=189.69 Aligned_cols=231 Identities=14% Similarity=0.109 Sum_probs=199.0
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 82 (268)
.|..+.++..+|.+++..|++++|+..|++++..+|++..+|+.+|.++...|++++|+..|++++..+|+++.+++.+|
T Consensus 327 ~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg 406 (615)
T TIGR00990 327 GEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRA 406 (615)
T ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhH
Q 024419 83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWK 162 (268)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (268)
.++...|++++|+..|+++++++|++..++..+|.++...|++++|..... ..+. ..+.....+...
T Consensus 407 ~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~--~al~-----------~~P~~~~~~~~l 473 (615)
T TIGR00990 407 QLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFR--RCKK-----------NFPEAPDVYNYY 473 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHH--HHHH-----------hCCCChHHHHHH
Confidence 999999999999999999999999999999999999999999999976632 1111 222333445566
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhchhH-----------------HHHHhhhhhhhHhhhhHHhcCCccccCcc-chhHHHH
Q 024419 163 HVFSFVVETMETAVKSWHETSKVDAK-----------------VYFLLDKEKTDTEKYAPIVNVDKAFESPH-THGSCFQ 224 (268)
Q Consensus 163 ~~~~~~~~~~~~A~~~~~~~~~~~~~-----------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~ 224 (268)
+.+....+++++|+..|.+++.+.|. .+...|++.+|...+++++.++|...... ..+.++.
T Consensus 474 g~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~ 553 (615)
T TIGR00990 474 GELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLL 553 (615)
T ss_pred HHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 77788889999999999999998874 12236899999999999999988664322 2688888
Q ss_pred HHHHH--HHHHHHHHhhhhCCCCcc
Q 024419 225 FLRQY--ADDSFSSAACLVAPKSII 247 (268)
Q Consensus 225 ~~~~~--a~~~~~ka~~~~~p~~~~ 247 (268)
..|++ |...|++|+ ++.+....
T Consensus 554 ~~g~~~eAi~~~e~A~-~l~~~~~e 577 (615)
T TIGR00990 554 QQGDVDEALKLFERAA-ELARTEGE 577 (615)
T ss_pred HccCHHHHHHHHHHHH-HHhccHHH
Confidence 88888 999999999 98886433
No 4
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=2.3e-22 Score=179.35 Aligned_cols=100 Identities=29% Similarity=0.506 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024419 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILE 86 (268)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 86 (268)
+..+..+|+.++..|+|++|+..|++++...|+ +..+.++|.||..+|++++|+..+.++++++|++..+++.+|.+|.
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 567889999999999999999999999999996 7799999999999999999999999999999999999999999999
Q ss_pred HccCHHHHHHHHHHHHhhCCC
Q 024419 87 AMEQYDDALSAFQTALQYNPQ 107 (268)
Q Consensus 87 ~~~~~~~A~~~~~~~l~~~p~ 107 (268)
.+|++++|+..|..++.+++.
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~ 226 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGF 226 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCC
Confidence 999999999888777665543
No 5
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=4.3e-23 Score=173.67 Aligned_cols=227 Identities=18% Similarity=0.233 Sum_probs=195.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh----------------------------------cCCCChHHHHHHHHHHH
Q 024419 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIK----------------------------------QDPSNPTLFSNRAAAFL 52 (268)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~----------------------------------~~p~~~~~~~~~a~~~~ 52 (268)
...+.++|..||..++|++|..+|+.+-. .+|+++..|+.+|.||-
T Consensus 353 ~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfS 432 (638)
T KOG1126|consen 353 GWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFS 432 (638)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhh
Confidence 35778999999999999999999998844 36777899999999999
Q ss_pred HcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419 53 HLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE 132 (268)
Q Consensus 53 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 132 (268)
-+++++.|+++|++|+++||++..+|..+|.=+....++|.|..+|+++|..+|.+..+|+++|.+|.++++++.|+-..
T Consensus 433 LQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~f 512 (638)
T KOG1126|consen 433 LQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHF 512 (638)
T ss_pred hhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999996552
Q ss_pred hhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH----------HHHHhhhhhhhHhh
Q 024419 133 NIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEK 202 (268)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~ 202 (268)
..++. +.+......+..|.++...++.++|+..+++|+.++|. +++.++++.+|+..
T Consensus 513 --qkA~~-----------INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~ 579 (638)
T KOG1126|consen 513 --QKAVE-----------INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQE 579 (638)
T ss_pred --Hhhhc-----------CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHH
Confidence 12222 23333445577788888899999999999999999986 68899999999999
Q ss_pred hhHHhcCCccccC-ccchhHHHHHHHHH--HHHHHHHHhhhhCCCCcc
Q 024419 203 YAPIVNVDKAFES-PHTHGSCFQFLRQY--ADDSFSSAACLVAPKSII 247 (268)
Q Consensus 203 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~--a~~~~~ka~~~~~p~~~~ 247 (268)
++.+..+-|+... ....|..+..+|+. |+..|.-|. .+||+...
T Consensus 580 LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~-~ldpkg~~ 626 (638)
T KOG1126|consen 580 LEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWAL-DLDPKGAQ 626 (638)
T ss_pred HHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHh-cCCCccch
Confidence 9999999775422 23377888888855 999999999 99998654
No 6
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=2e-21 Score=158.39 Aligned_cols=255 Identities=20% Similarity=0.317 Sum_probs=182.2
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024419 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI 84 (268)
Q Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 84 (268)
..+..+..+|+.++.+|+|++||.+|..||.++|+.+..|.+++.||...|+|++-++...++++++|+...++++++.+
T Consensus 113 k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A 192 (606)
T KOG0547|consen 113 KYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASA 192 (606)
T ss_pred HHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCHHHHHHHHH------------------HHHhh--------------C---CC----------------------
Q 024419 85 LEAMEQYDDALSAFQ------------------TALQY--------------N---PQ---------------------- 107 (268)
Q Consensus 85 ~~~~~~~~~A~~~~~------------------~~l~~--------------~---p~---------------------- 107 (268)
+..+|++.+|+.... +.|.. . |.
T Consensus 193 ~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~ 272 (606)
T KOG0547|consen 193 HEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNK 272 (606)
T ss_pred HHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCC
Confidence 999999988875221 11111 0 00
Q ss_pred -C---H------------------------------------------------HHHHHHHHHH-------HHHHHHHHh
Q 024419 108 -S---A------------------------------------------------EVSRKIKRVS-------QLAKDKKRA 128 (268)
Q Consensus 108 -~---~------------------------------------------------~~~~~l~~~~-------~~~~~~~~a 128 (268)
+ . .++...|..+ ..+.+++.+
T Consensus 273 ~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~ 352 (606)
T KOG0547|consen 273 SDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAA 352 (606)
T ss_pred CccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHH
Confidence 0 0 0000000000 011122222
Q ss_pred HHHHhhh-h-hHHHh----------hhHHHH--HHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH------
Q 024419 129 QEVENIR-S-NVDMV----------QHLDEF--KSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK------ 188 (268)
Q Consensus 129 ~~~~~~~-~-~~~~~----------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------ 188 (268)
+.+.... + .+... .....+ ...+.+...+++..+|.+.+.++++++|+..|.+++.++|.
T Consensus 353 I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~i 432 (606)
T KOG0547|consen 353 IKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYI 432 (606)
T ss_pred HhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHH
Confidence 2221100 0 01000 000111 12345567788899999999999999999999999999998
Q ss_pred ----HHHHhhhhhhhHhhhhHHhcCCccccCccc-hhHHHHHHHHH--HHHHHHHHhhhhCCC------Ccccccccccc
Q 024419 189 ----VYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--ADDSFSSAACLVAPK------SIISYPQVYKP 255 (268)
Q Consensus 189 ----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--a~~~~~ka~~~~~p~------~~~~~~~~~~~ 255 (268)
..+..+++..+...|+.++...|.....+. .+.++.-.++| |.+.|++|+ .+.|. |+.++ |.++
T Consensus 433 Ql~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai-~LE~~~~~~~v~~~pl--V~Ka 509 (606)
T KOG0547|consen 433 QLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI-ELEPREHLIIVNAAPL--VHKA 509 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH-hhccccccccccchhh--hhhh
Confidence 345667889999999999988776543333 78888888899 999999999 99999 54433 3455
Q ss_pred cccccch
Q 024419 256 ICLERSR 262 (268)
Q Consensus 256 ~~~~~~~ 262 (268)
.-..||+
T Consensus 510 ~l~~qwk 516 (606)
T KOG0547|consen 510 LLVLQWK 516 (606)
T ss_pred Hhhhchh
Confidence 5455555
No 7
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=6.1e-21 Score=155.63 Aligned_cols=222 Identities=18% Similarity=0.205 Sum_probs=190.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024419 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILE 86 (268)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 86 (268)
++++..+|..++..|++..|-+.++.+|+++|.....|..+|.+|...++.++....|.+|..+||.++++|+.+|.+++
T Consensus 326 A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~f 405 (606)
T KOG0547|consen 326 AEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRF 405 (606)
T ss_pred HHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHH
Q 024419 87 AMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFS 166 (268)
Q Consensus 87 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (268)
-+++|++|+..|+++++++|++..++.+++-+...++.++++..... .. ..-.+....++...+.+.
T Consensus 406 lL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fe--e~-----------kkkFP~~~Evy~~fAeiL 472 (606)
T KOG0547|consen 406 LLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFE--EA-----------KKKFPNCPEVYNLFAEIL 472 (606)
T ss_pred HHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHH--HH-----------HHhCCCCchHHHHHHHHH
Confidence 99999999999999999999999999999999999998888765521 11 112334445555666678
Q ss_pred HHHHHHHHHHHhhhhhhhchhH-----------------HHHHhhhhhhhHhhhhHHhcCCccccCccc-hhHHHHHHHH
Q 024419 167 FVVETMETAVKSWHETSKVDAK-----------------VYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQ 228 (268)
Q Consensus 167 ~~~~~~~~A~~~~~~~~~~~~~-----------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 228 (268)
..++++++|++.|.+++.+.|+ +....+++..|++.++++++++|....... +++.....++
T Consensus 473 tDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~ 552 (606)
T KOG0547|consen 473 TDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGK 552 (606)
T ss_pred hhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhh
Confidence 8899999999999999999987 244668999999999999999986533332 5666666666
Q ss_pred H--HHHHHHHHhhhhC
Q 024419 229 Y--ADDSFSSAACLVA 242 (268)
Q Consensus 229 ~--a~~~~~ka~~~~~ 242 (268)
. |++.|++++ .+.
T Consensus 553 i~eAielFEksa-~lA 567 (606)
T KOG0547|consen 553 IDEAIELFEKSA-QLA 567 (606)
T ss_pred HHHHHHHHHHHH-HHH
Confidence 6 999999998 554
No 8
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=3.8e-22 Score=168.04 Aligned_cols=196 Identities=16% Similarity=0.197 Sum_probs=176.3
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 82 (268)
.|..+++|...|+++-.+++++.||++|++|+++||..+.+|..+|.-+....+++.|..+|++||..+|++..+|+.+|
T Consensus 417 ~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG 496 (638)
T KOG1126|consen 417 DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLG 496 (638)
T ss_pred CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhh
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCc--hhh
Q 024419 83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGA--EEC 160 (268)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 160 (268)
.+|.++++++.|.-.|++|++++|.+..+...+|.++...|..++|..+. ..++..+..+ ..+
T Consensus 497 ~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~---------------~~A~~ld~kn~l~~~ 561 (638)
T KOG1126|consen 497 TVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLY---------------EKAIHLDPKNPLCKY 561 (638)
T ss_pred hheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHH---------------HHHHhcCCCCchhHH
Confidence 99999999999999999999999999999999999999999999997763 2223333333 345
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhchhH----------HHHHhhhhhhhHhhhhHHhcCCccc
Q 024419 161 WKHVFSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAF 213 (268)
Q Consensus 161 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~~~~ 213 (268)
.++.+.+..+++++|+..++..-++.|+ +|..+|+...|+..|.-|.+++|.-
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 6677888899999999999998888886 5778888899999999999998854
No 9
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.86 E-value=2.2e-20 Score=166.74 Aligned_cols=242 Identities=10% Similarity=0.004 Sum_probs=167.5
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 82 (268)
.|.+++++..+|......|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++.++|+++.++..+|
T Consensus 72 ~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la 151 (656)
T PRK15174 72 AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHL 151 (656)
T ss_pred CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 57788888999988899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhH---HHh-----------------h
Q 024419 83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNV---DMV-----------------Q 142 (268)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~-----------------~ 142 (268)
.++...|++++|+..+++++..+|+++.++..++. +...|++++|.......... ... .
T Consensus 152 ~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~-l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~e 230 (656)
T PRK15174 152 RTLVLMDKELQAISLARTQAQEVPPRGDMIATCLS-FLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQE 230 (656)
T ss_pred HHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHH
Confidence 99999999999999999998999988888776643 56678888886653210000 000 0
Q ss_pred hHHHHHHHh--hhhcCchhhhHHHHHHHHHHHHH----HHHhhhhhhhchhH----------HHHHhhhhhhhHhhhhHH
Q 024419 143 HLDEFKSEM--SEKYGAEECWKHVFSFVVETMET----AVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPI 206 (268)
Q Consensus 143 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~----A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~ 206 (268)
.+..+...+ .+.........+..+...+++++ |+..|++++.++|. ++...|++++|+..++++
T Consensus 231 A~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~a 310 (656)
T PRK15174 231 AIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQS 310 (656)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 000000001 11111222333444445556553 67777777777665 345566777777777777
Q ss_pred hcCCccccCcc-chhHHHHHHHHH--HHHHHHHHhhhhCCCCc
Q 024419 207 VNVDKAFESPH-THGSCFQFLRQY--ADDSFSSAACLVAPKSI 246 (268)
Q Consensus 207 ~~~~~~~~~~~-~~~~~~~~~~~~--a~~~~~ka~~~~~p~~~ 246 (268)
+.++|...... .++.++...|++ |...|++++ ..+|++.
T Consensus 311 l~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al-~~~P~~~ 352 (656)
T PRK15174 311 LATHPDLPYVRAMYARALRQVGQYTAASDEFVQLA-REKGVTS 352 (656)
T ss_pred HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCccch
Confidence 77766542211 145555566666 777777777 7777653
No 10
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.85 E-value=1.2e-19 Score=162.15 Aligned_cols=230 Identities=12% Similarity=0.059 Sum_probs=170.7
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH-
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK- 81 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l- 81 (268)
.|.++.++..+|..+...|++++|+..|+++++++|+++.++..+|.++..+|++++|+..+++++..+|+++.++..+
T Consensus 106 ~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~ 185 (656)
T PRK15174 106 NVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL 185 (656)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 5888999999999999999999999999999999999999999999999999999999999999999998887776554
Q ss_pred ---------------------------------HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHh
Q 024419 82 ---------------------------------GCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRA 128 (268)
Q Consensus 82 ---------------------------------a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a 128 (268)
+.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|
T Consensus 186 ~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA 265 (656)
T PRK15174 186 SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREA 265 (656)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhh
Confidence 23334444555555555555555555555555555555555544432
Q ss_pred ----HHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH----------HHHHhh
Q 024419 129 ----QEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK----------VYFLLD 194 (268)
Q Consensus 129 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~ 194 (268)
.... .. ...+.+.........+.+....+++++|+..+++++.++|. ++...|
T Consensus 266 ~~~A~~~~--~~-----------Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G 332 (656)
T PRK15174 266 KLQAAEHW--RH-----------ALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVG 332 (656)
T ss_pred HHHHHHHH--HH-----------HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 1110 00 01122233344556667777889999999999999999887 566889
Q ss_pred hhhhhHhhhhHHhcCCccccCccc-hhHHHHHHHHH--HHHHHHHHhhhhCCCCc
Q 024419 195 KEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--ADDSFSSAACLVAPKSI 246 (268)
Q Consensus 195 ~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--a~~~~~ka~~~~~p~~~ 246 (268)
++++|+..|+.++..+|....... .+.++...|++ |...|++++ +.+|++.
T Consensus 333 ~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al-~~~P~~~ 386 (656)
T PRK15174 333 QYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYI-QARASHL 386 (656)
T ss_pred CHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhChhhc
Confidence 999999999999999886532222 35567777777 999999999 9999875
No 11
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.85 E-value=4.3e-19 Score=144.19 Aligned_cols=128 Identities=16% Similarity=0.209 Sum_probs=112.4
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 82 (268)
++..+..++.+|..+...|++++|+..|+++++.+|+++.+|+++|.++..+|++++|+..|+++++++|++..++.++|
T Consensus 60 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg 139 (296)
T PRK11189 60 DEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRG 139 (296)
T ss_pred cHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 44568889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHH
Q 024419 83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV 131 (268)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 131 (268)
.++...|++++|++.|+++++++|+++.....+ .+....++.++|...
T Consensus 140 ~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~-~l~~~~~~~~~A~~~ 187 (296)
T PRK11189 140 IALYYGGRYELAQDDLLAFYQDDPNDPYRALWL-YLAESKLDPKQAKEN 187 (296)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHccCCHHHHHHH
Confidence 999999999999999999999999998422111 222334556666554
No 12
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.85 E-value=2.9e-19 Score=140.34 Aligned_cols=246 Identities=17% Similarity=0.259 Sum_probs=174.6
Q ss_pred CchHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 024419 2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK 81 (268)
Q Consensus 2 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 81 (268)
..|.+++-.+.+|..++..|++.+|+..|..|++.||++..+++.+|.+|+.+|+-.-|+..+.++|++.|++.-+..+.
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQR 112 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQR 112 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHh
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHHHHHHHhHHHH---hhhhhHHHhh----------hHH
Q 024419 82 GCILEAMEQYDDALSAFQTALQYNPQSA---EVSRKIKRVSQLAKDKKRAQEVE---NIRSNVDMVQ----------HLD 145 (268)
Q Consensus 82 a~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~~~~~~a~~~~---~~~~~~~~~~----------~~~ 145 (268)
|.++.++|+++.|...|..+|..+|++. ++...++.+........+..... .....+.... .+.
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~ 192 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLR 192 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHH
Confidence 9999999999999999999999999664 34444443332222222221111 0000010000 001
Q ss_pred HHHHH--------------------hhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH-----------------
Q 024419 146 EFKSE--------------------MSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK----------------- 188 (268)
Q Consensus 146 ~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------------- 188 (268)
..+.. +..+.....+....+.+-.++.+.++...+..++++|+
T Consensus 193 ~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~ 272 (504)
T KOG0624|consen 193 QARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKS 272 (504)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHH
Confidence 11111 11122222233333444566777777777777777765
Q ss_pred -------------------------------------------HHHHhhhhhhhHhhhhHHhcCCccccC-ccchhHHHH
Q 024419 189 -------------------------------------------VYFLLDKEKTDTEKYAPIVNVDKAFES-PHTHGSCFQ 224 (268)
Q Consensus 189 -------------------------------------------~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~ 224 (268)
++..-+++.+|++.+..+++++|+.+. ....+.+|.
T Consensus 273 les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l 352 (504)
T KOG0624|consen 273 LESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYL 352 (504)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHh
Confidence 234556777888888888888776421 122556666
Q ss_pred HHHHH--HHHHHHHHhhhhCCCCccc
Q 024419 225 FLRQY--ADDSFSSAACLVAPKSIIS 248 (268)
Q Consensus 225 ~~~~~--a~~~~~ka~~~~~p~~~~~ 248 (268)
.-.+| |+.+|++|. +++|+|..+
T Consensus 353 ~dE~YD~AI~dye~A~-e~n~sn~~~ 377 (504)
T KOG0624|consen 353 GDEMYDDAIHDYEKAL-ELNESNTRA 377 (504)
T ss_pred hhHHHHHHHHHHHHHH-hcCcccHHH
Confidence 66688 999999999 999998643
No 13
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.85 E-value=3.1e-20 Score=143.69 Aligned_cols=122 Identities=34% Similarity=0.578 Sum_probs=116.3
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024419 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI 84 (268)
Q Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 84 (268)
..++.+...|+.++..++|++|+..|.+||+++|+++..|+++|.+|.++|+++.|++.++.+|.+||.+.++|.+||.+
T Consensus 79 ~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A 158 (304)
T KOG0553|consen 79 ALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLA 158 (304)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q 024419 85 LEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKK 126 (268)
Q Consensus 85 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~ 126 (268)
|..+|++++|++.|+++|+++|+|...+..|..+...+++..
T Consensus 159 ~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 159 YLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999988877776555
No 14
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.84 E-value=7.4e-19 Score=166.46 Aligned_cols=87 Identities=8% Similarity=-0.007 Sum_probs=67.0
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhhchhH----------HHHHhhhhhhhHhhhhHHhcCCccccCccc-hhHHHHHHH
Q 024419 159 ECWKHVFSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLR 227 (268)
Q Consensus 159 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 227 (268)
....+..+...+++++|+..|++++..+|. ++...|+..+|+..++.++...|....... .+.++...+
T Consensus 606 ~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g 685 (1157)
T PRK11447 606 DLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALG 685 (1157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCC
Confidence 344555667789999999999999998886 567889999999999999888775432222 566677777
Q ss_pred HH--HHHHHHHHhhhhCCCCc
Q 024419 228 QY--ADDSFSSAACLVAPKSI 246 (268)
Q Consensus 228 ~~--a~~~~~ka~~~~~p~~~ 246 (268)
++ |...|++++ ...|++.
T Consensus 686 ~~~eA~~~~~~al-~~~~~~~ 705 (1157)
T PRK11447 686 DTAAAQRTFNRLI-PQAKSQP 705 (1157)
T ss_pred CHHHHHHHHHHHh-hhCccCC
Confidence 77 999999999 8877654
No 15
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.83 E-value=4.6e-19 Score=164.19 Aligned_cols=226 Identities=15% Similarity=0.185 Sum_probs=112.0
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024419 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCIL 85 (268)
Q Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 85 (268)
+...+..++..+...|++++|+..+++++...|.+..+|..+|.++...|++++|+..|+++++.+|.++.++..+|.++
T Consensus 566 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 645 (899)
T TIGR02917 566 EIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAY 645 (899)
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 34444455555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHH
Q 024419 86 EAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVF 165 (268)
Q Consensus 86 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (268)
...|++++|+..|+++++.+|++..++..++.++...|++++|..+...... ..+.........+..
T Consensus 646 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------------~~~~~~~~~~~~~~~ 712 (899)
T TIGR02917 646 AVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQK-------------QHPKAALGFELEGDL 712 (899)
T ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------------hCcCChHHHHHHHHH
Confidence 5555555555555555555555555555555555555555555443211000 000011112223333
Q ss_pred HHHHHHHHHHHHhhhhhhhchhH---------HHHHhhhhhhhHhhhhHHhcCCccccCccc-hhHHHHHHHHH--HHHH
Q 024419 166 SFVVETMETAVKSWHETSKVDAK---------VYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--ADDS 233 (268)
Q Consensus 166 ~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--a~~~ 233 (268)
....+++++|+..|.+++...|. ++...|+..+|.+.++.++...|....... .+.++...|++ |...
T Consensus 713 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 792 (899)
T TIGR02917 713 YLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKH 792 (899)
T ss_pred HHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHH
Confidence 44455555555555555554443 233445555555555555554443211111 33333334444 5555
Q ss_pred HHHHhhhhCCCC
Q 024419 234 FSSAACLVAPKS 245 (268)
Q Consensus 234 ~~ka~~~~~p~~ 245 (268)
|++++ ..+|++
T Consensus 793 ~~~~~-~~~p~~ 803 (899)
T TIGR02917 793 YRTVV-KKAPDN 803 (899)
T ss_pred HHHHH-HhCCCC
Confidence 55555 555544
No 16
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.83 E-value=1.3e-18 Score=161.29 Aligned_cols=245 Identities=16% Similarity=0.190 Sum_probs=182.6
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 82 (268)
.|..+..+..+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++..+|.+..++..+|
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 200 (899)
T TIGR02917 121 DEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKG 200 (899)
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhH-HHh------------------hh
Q 024419 83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNV-DMV------------------QH 143 (268)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~------------------~~ 143 (268)
.++...|++++|+..|++++..+|+++.++..++.++...|++++|.......... ... ..
T Consensus 201 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 280 (899)
T TIGR02917 201 DLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDA 280 (899)
T ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHH
Confidence 99999999999999999999999999999999999999999999987653211000 000 00
Q ss_pred HHHHHHH--hhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH----------HHHHhhhhhhhHhhhhHHhcCCc
Q 024419 144 LDEFKSE--MSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDK 211 (268)
Q Consensus 144 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~~ 211 (268)
+..+... ..+.........+......+++++|+..+.+++...|. ++...|+..+|...+..++...|
T Consensus 281 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 360 (899)
T TIGR02917 281 RETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDP 360 (899)
T ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 0000000 01111122233344555566777777777777666554 34566777777777777776655
Q ss_pred cccC-ccchhHHHHHHHHH--HHHHHHHHhhhhCCCCccc
Q 024419 212 AFES-PHTHGSCFQFLRQY--ADDSFSSAACLVAPKSIIS 248 (268)
Q Consensus 212 ~~~~-~~~~~~~~~~~~~~--a~~~~~ka~~~~~p~~~~~ 248 (268)
.... ....+.++...+++ |.+.|++++ .++|++...
T Consensus 361 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~ 399 (899)
T TIGR02917 361 DDPAALSLLGEAYLALGDFEKAAEYLAKAT-ELDPENAAA 399 (899)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hcCCCCHHH
Confidence 4311 11245556666666 888899998 888887543
No 17
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.82 E-value=9.8e-19 Score=126.75 Aligned_cols=117 Identities=17% Similarity=0.208 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024419 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILE 86 (268)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 86 (268)
+..+..+|..+...|++++|+..|++++..+|.+..+|+++|.++...|++++|+..|++++.++|+++.+++++|.++.
T Consensus 24 p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~ 103 (144)
T PRK15359 24 PETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 33477889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 024419 87 AMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAK 123 (268)
Q Consensus 87 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~ 123 (268)
..|++++|+..|+++++++|+++..+...+.+....+
T Consensus 104 ~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~ 140 (144)
T PRK15359 104 MMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVD 140 (144)
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998888866543
No 18
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.82 E-value=1.5e-18 Score=164.30 Aligned_cols=201 Identities=13% Similarity=0.079 Sum_probs=107.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHH--------------H
Q 024419 12 DKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEK--------------G 77 (268)
Q Consensus 12 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~--------------~ 77 (268)
.+|..+...|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..|+++++.+|++.. .
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 34555556666666666666666666666666666666666666666666666666666555421 1
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhH-----HHhhhHHHHHHH--
Q 024419 78 YFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNV-----DMVQHLDEFKSE-- 150 (268)
Q Consensus 78 ~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~-- 150 (268)
...+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++|+......... .....+..+...
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~ 433 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQS 433 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 1233555555566666666666666666655555555566555555555554432210000 000000000000
Q ss_pred ----------------------hhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH----------HHHHhhhhhh
Q 024419 151 ----------------------MSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKT 198 (268)
Q Consensus 151 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~ 198 (268)
............+......+++++|+..|++++.++|+ +|...|+.++
T Consensus 434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~ 513 (1157)
T PRK11447 434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQ 513 (1157)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 00000011222334455567778888888888877775 4666777778
Q ss_pred hHhhhhHHhcCCcc
Q 024419 199 DTEKYAPIVNVDKA 212 (268)
Q Consensus 199 a~~~~~~~~~~~~~ 212 (268)
|+..+++++..+|.
T Consensus 514 A~~~l~~al~~~P~ 527 (1157)
T PRK11447 514 ADALMRRLAQQKPN 527 (1157)
T ss_pred HHHHHHHHHHcCCC
Confidence 88777777776554
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.82 E-value=4e-18 Score=144.33 Aligned_cols=240 Identities=13% Similarity=0.034 Sum_probs=178.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC----HHHHHHHH
Q 024419 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW----EKGYFRKG 82 (268)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la 82 (268)
....+..|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++...+.. ..++..+|
T Consensus 35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La 114 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELG 114 (389)
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 34556778888999999999999999999999999999999999999999999999999988854322 35688899
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHH-------h--------------
Q 024419 83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDM-------V-------------- 141 (268)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~-------------- 141 (268)
.++...|++++|+..|+++++.+|.+..++..++.++...|++++|.+.......... .
T Consensus 115 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 194 (389)
T PRK11788 115 QDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARG 194 (389)
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999988765332111000 0
Q ss_pred ---hhHHHHHHH--hhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH-----------HHHHhhhhhhhHhhhhH
Q 024419 142 ---QHLDEFKSE--MSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK-----------VYFLLDKEKTDTEKYAP 205 (268)
Q Consensus 142 ---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----------~~~~~~~~~~a~~~~~~ 205 (268)
.....+... ..+.........+.++...+++++|+..+++++..+|. +|...|+.++|...+++
T Consensus 195 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 274 (389)
T PRK11788 195 DLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRR 274 (389)
T ss_pred CHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 000000100 11112223344455566688889999999998877664 45577899999999999
Q ss_pred HhcCCccccCccchhHHHHHHHHH--HHHHHHHHhhhhCCCCcc
Q 024419 206 IVNVDKAFESPHTHGSCFQFLRQY--ADDSFSSAACLVAPKSII 247 (268)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~--a~~~~~ka~~~~~p~~~~ 247 (268)
++...|........+..+...+++ |...|++++ ..+|++..
T Consensus 275 ~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l-~~~P~~~~ 317 (389)
T PRK11788 275 ALEEYPGADLLLALAQLLEEQEGPEAAQALLREQL-RRHPSLRG 317 (389)
T ss_pred HHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHH-HhCcCHHH
Confidence 988877653333356666666667 999999999 88998753
No 20
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=2.8e-18 Score=139.42 Aligned_cols=165 Identities=14% Similarity=0.160 Sum_probs=144.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 024419 8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEA 87 (268)
Q Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 87 (268)
+...-+|+-|...++.++|+.+|++|++++|+...+|..+|.-|+.+.+...|++.|++|++++|.+..+|+.+|++|.-
T Consensus 331 ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYei 410 (559)
T KOG1155|consen 331 ETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEI 410 (559)
T ss_pred cceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHH
Confidence 44556788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHHH
Q 024419 88 MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSF 167 (268)
Q Consensus 88 ~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (268)
++.+.=|+-+|+++++.-|+++..|..||++|..+++.++|+.... . .......-+..+...+.++.
T Consensus 411 m~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCyk------r-------ai~~~dte~~~l~~LakLye 477 (559)
T KOG1155|consen 411 MKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYK------R-------AILLGDTEGSALVRLAKLYE 477 (559)
T ss_pred hcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHH------H-------HHhccccchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999987742 1 11112223455666677777
Q ss_pred HHHHHHHHHHhhhhhhhc
Q 024419 168 VVETMETAVKSWHETSKV 185 (268)
Q Consensus 168 ~~~~~~~A~~~~~~~~~~ 185 (268)
..++.++|...|++.++.
T Consensus 478 ~l~d~~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 478 ELKDLNEAAQYYEKYVEV 495 (559)
T ss_pred HHHhHHHHHHHHHHHHHH
Confidence 788888888888887763
No 21
>PRK12370 invasion protein regulator; Provisional
Probab=99.80 E-value=1.1e-17 Score=147.08 Aligned_cols=230 Identities=14% Similarity=0.061 Sum_probs=161.6
Q ss_pred HHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcC---------ChHHHHHHHHHHHhhCCCCHH
Q 024419 9 SLKDKGNEFFKA---GNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLV---------KLNKALADAETTISLNPQWEK 76 (268)
Q Consensus 9 ~~~~~g~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~---------~~~~A~~~~~~al~~~p~~~~ 76 (268)
.++.+|...+.. +++++|+..|+++++.+|+++.+|..+|.|+...+ ++++|+..++++++++|+++.
T Consensus 260 ~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~ 339 (553)
T PRK12370 260 MVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQ 339 (553)
T ss_pred HHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHH
Confidence 456667655443 45789999999999999999999999999887543 478999999999999999999
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcC
Q 024419 77 GYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYG 156 (268)
Q Consensus 77 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (268)
++..+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++|..... ..+...+ ...
T Consensus 340 a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~--~Al~l~P-----------~~~ 406 (553)
T PRK12370 340 ALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTIN--ECLKLDP-----------TRA 406 (553)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH--HHHhcCC-----------CCh
Confidence 999999999999999999999999999999999999999999999999999976531 1111111 111
Q ss_pred chhhhHHHHHHHHHHHHHHHHhhhhhhhch-hH----------HHHHhhhhhhhHhhhhHHhcCCccccCccc-hhHHHH
Q 024419 157 AEECWKHVFSFVVETMETAVKSWHETSKVD-AK----------VYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQ 224 (268)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~----------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~ 224 (268)
..........+..+++++|+..+.+++... |. ++..+|+.++|...+.++....|....... .+..+.
T Consensus 407 ~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 407 AAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYC 486 (553)
T ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHh
Confidence 111222333455688889999888887653 32 345678889999988887666554211111 222333
Q ss_pred HHHHH---HHHHHHHHhhhhCCCCccccccc
Q 024419 225 FLRQY---ADDSFSSAACLVAPKSIISYPQV 252 (268)
Q Consensus 225 ~~~~~---a~~~~~ka~~~~~p~~~~~~~~~ 252 (268)
..+.- .+..+.++. ...|.+....+.+
T Consensus 487 ~~g~~a~~~l~~ll~~~-~~~~~~~~~~~~~ 516 (553)
T PRK12370 487 QNSERALPTIREFLESE-QRIDNNPGLLPLV 516 (553)
T ss_pred ccHHHHHHHHHHHHHHh-hHhhcCchHHHHH
Confidence 33322 244444555 4555554444443
No 22
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=9.6e-18 Score=138.64 Aligned_cols=112 Identities=38% Similarity=0.672 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 024419 8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEA 87 (268)
Q Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 87 (268)
.-....|+..+..|+|+.|+.+|..++.++|.+...+.++..||..+|+|++|++.-.+.++++|+++.+|.++|..+..
T Consensus 3 ~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~ 82 (539)
T KOG0548|consen 3 VELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFG 82 (539)
T ss_pred hHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024419 88 MEQYDDALSAFQTALQYNPQSAEVSRKIKRVS 119 (268)
Q Consensus 88 ~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 119 (268)
+|+|++|+..|.+.|+.+|+|.....++.+++
T Consensus 83 lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 83 LGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred cccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 99999999999999999999999988888876
No 23
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.79 E-value=4.1e-17 Score=127.67 Aligned_cols=168 Identities=15% Similarity=0.157 Sum_probs=135.4
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024419 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI 84 (268)
Q Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 84 (268)
..+..+..+|..++..|++++|+..++++++.+|++..++..+|.++..+|++++|+..+++++..+|.+..++..+|.+
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 108 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTF 108 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 44778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhH
Q 024419 85 LEAMEQYDDALSAFQTALQYN--PQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWK 162 (268)
Q Consensus 85 ~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (268)
+...|++++|+..+++++... |.....+..++.++...|++++|...... .+.. .+.........
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--~~~~-----------~~~~~~~~~~l 175 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTR--ALQI-----------DPQRPESLLEL 175 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHH--HHHh-----------CcCChHHHHHH
Confidence 999999999999999999854 56677888999999999999988765311 1111 11111223334
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhc
Q 024419 163 HVFSFVVETMETAVKSWHETSKV 185 (268)
Q Consensus 163 ~~~~~~~~~~~~A~~~~~~~~~~ 185 (268)
+.+....+++++|+..+++++..
T Consensus 176 a~~~~~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 176 AELYYLRGQYKDARAYLERYQQT 198 (234)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 44455566666666666655544
No 24
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.79 E-value=6e-18 Score=140.94 Aligned_cols=222 Identities=14% Similarity=0.153 Sum_probs=176.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Q 024419 10 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAME 89 (268)
Q Consensus 10 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 89 (268)
-+..|..++++|+..+|+-.|+.|++.+|.+.++|..+|.+....++-..||..+++|++++|+|..++..||.+|...|
T Consensus 288 Pf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 288 PFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEG 367 (579)
T ss_pred hHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH---HHHHHhHHHHhhhhhHHHhhhHHHHHHHhh-----hhcCchhhh
Q 024419 90 QYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA---KDKKRAQEVENIRSNVDMVQHLDEFKSEMS-----EKYGAEECW 161 (268)
Q Consensus 90 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 161 (268)
.-.+|..++.+-+...|.....-. +...... +.+... .....+..+..+.. ....++...
T Consensus 368 ~q~~Al~~L~~Wi~~~p~y~~l~~--a~~~~~~~~~~s~~~~----------~~l~~i~~~fLeaa~~~~~~~DpdvQ~~ 435 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNKPKYVHLVS--AGENEDFENTKSFLDS----------SHLAHIQELFLEAARQLPTKIDPDVQSG 435 (579)
T ss_pred hHHHHHHHHHHHHHhCccchhccc--cCccccccCCcCCCCH----------HHHHHHHHHHHHHHHhCCCCCChhHHhh
Confidence 999999999999998875422111 0000000 000000 00000111111111 123456788
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhchhHH---HH-------HhhhhhhhHhhhhHHhcCCccccCccc-hhHHHHHHHHH-
Q 024419 162 KHVFSFVVETMETAVKSWHETSKVDAKV---YF-------LLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY- 229 (268)
Q Consensus 162 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~-------~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~- 229 (268)
+|+++...+.|++|+.+|+.++...|.- +. .-.+..+|+..|.+|+.+.|.++..+. +|.++..+|.|
T Consensus 436 LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~yk 515 (579)
T KOG1125|consen 436 LGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYK 515 (579)
T ss_pred hHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHH
Confidence 8999999999999999999999999982 22 334788999999999999999987665 89999999999
Q ss_pred -HHHHHHHHhhhhCCC
Q 024419 230 -ADDSFSSAACLVAPK 244 (268)
Q Consensus 230 -a~~~~~ka~~~~~p~ 244 (268)
|.+.|-.|| .+.++
T Consensus 516 EA~~hlL~AL-~mq~k 530 (579)
T KOG1125|consen 516 EAVKHLLEAL-SMQRK 530 (579)
T ss_pred HHHHHHHHHH-Hhhhc
Confidence 999999999 99887
No 25
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.79 E-value=7.1e-18 Score=137.07 Aligned_cols=211 Identities=14% Similarity=0.060 Sum_probs=151.3
Q ss_pred cCCHHHHHHHHHHHHhcCC----CChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHH
Q 024419 20 AGNYLKAAALYTQAIKQDP----SNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDAL 95 (268)
Q Consensus 20 ~~~~~~A~~~~~~al~~~p----~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~ 95 (268)
.+..+.++..+.+++...| ..+..|+.+|.++...|++++|+..|+++++++|+++.+|..+|.++...|++++|+
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 4567889999999996433 347889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHH-HHHHHHHHHHH
Q 024419 96 SAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKH-VFSFVVETMET 174 (268)
Q Consensus 96 ~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 174 (268)
..|+++++++|++..++..+|.++...|++++|..... ..+...+ ........ .+....+++++
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~--~al~~~P-------------~~~~~~~~~~l~~~~~~~~~ 183 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLL--AFYQDDP-------------NDPYRALWLYLAESKLDPKQ 183 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH--HHHHhCC-------------CCHHHHHHHHHHHccCCHHH
Confidence 99999999999999999999999999999999976531 1111111 11110000 01223456788
Q ss_pred HHHhhhhhhhc-hhH------HHHHhhhhhhhHhhhhHHh-------cCCcccc-CccchhHHHHHHHHH--HHHHHHHH
Q 024419 175 AVKSWHETSKV-DAK------VYFLLDKEKTDTEKYAPIV-------NVDKAFE-SPHTHGSCFQFLRQY--ADDSFSSA 237 (268)
Q Consensus 175 A~~~~~~~~~~-~~~------~~~~~~~~~~a~~~~~~~~-------~~~~~~~-~~~~~~~~~~~~~~~--a~~~~~ka 237 (268)
|+..+.+.... +|. +...+|+...+ +.+..+. .+.|... .....|..+...|++ |...|++|
T Consensus 184 A~~~l~~~~~~~~~~~~~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~A 262 (296)
T PRK11189 184 AKENLKQRYEKLDKEQWGWNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLA 262 (296)
T ss_pred HHHHHHHHHhhCCccccHHHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 88888665433 332 33456665443 2333332 2222111 112256666767777 99999999
Q ss_pred hhhhCCCCcc
Q 024419 238 ACLVAPKSII 247 (268)
Q Consensus 238 ~~~~~p~~~~ 247 (268)
+ .++|.+..
T Consensus 263 l-~~~~~~~~ 271 (296)
T PRK11189 263 L-ANNVYNFV 271 (296)
T ss_pred H-HhCCchHH
Confidence 9 99986543
No 26
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.79 E-value=3e-17 Score=138.97 Aligned_cols=205 Identities=14% Similarity=0.046 Sum_probs=141.5
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC----HHHHHHH
Q 024419 40 NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS----AEVSRKI 115 (268)
Q Consensus 40 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~----~~~~~~l 115 (268)
.....+.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++...+.. ..++..+
T Consensus 34 ~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~L 113 (389)
T PRK11788 34 RLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQEL 113 (389)
T ss_pred hccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 345667789999999999999999999999999999999999999999999999999999999854332 3578899
Q ss_pred HHHHHHHHHHHHhHHHHhhhhh-----HHHhhhH--------------HHHHHHhhhhcCc-------hhhhHHHHHHHH
Q 024419 116 KRVSQLAKDKKRAQEVENIRSN-----VDMVQHL--------------DEFKSEMSEKYGA-------EECWKHVFSFVV 169 (268)
Q Consensus 116 ~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~--------------~~~~~~~~~~~~~-------~~~~~~~~~~~~ 169 (268)
+.++...|++++|......... ......+ ..+...+...... .....+......
T Consensus 114 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 193 (389)
T PRK11788 114 GQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALAR 193 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhC
Confidence 9999999999999765331111 0000000 0000000000000 111223334456
Q ss_pred HHHHHHHHhhhhhhhchhH----------HHHHhhhhhhhHhhhhHHhcCCccccC--ccchhHHHHHHHHH--HHHHHH
Q 024419 170 ETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAFES--PHTHGSCFQFLRQY--ADDSFS 235 (268)
Q Consensus 170 ~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--a~~~~~ 235 (268)
+++++|+..+.++++..|. ++...|+.++|...+++++..+|.... ....+..+...+++ |...++
T Consensus 194 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 273 (389)
T PRK11788 194 GDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLR 273 (389)
T ss_pred CCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7888888888888877765 455778888888888888877664311 11234555555656 888888
Q ss_pred HHhhhhCCCC
Q 024419 236 SAACLVAPKS 245 (268)
Q Consensus 236 ka~~~~~p~~ 245 (268)
+++ ...|+.
T Consensus 274 ~~~-~~~p~~ 282 (389)
T PRK11788 274 RAL-EEYPGA 282 (389)
T ss_pred HHH-HhCCCc
Confidence 888 888865
No 27
>PRK12370 invasion protein regulator; Provisional
Probab=99.79 E-value=3e-17 Score=144.39 Aligned_cols=221 Identities=11% Similarity=0.015 Sum_probs=163.0
Q ss_pred chHhHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 024419 3 AEAEEMSLKDKGNEFFKA---------GNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ 73 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 73 (268)
.|.++.++..+|.++... +++++|+..++++++++|+++.++..+|.++...|++++|+..|+++++++|+
T Consensus 291 dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~ 370 (553)
T PRK12370 291 SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI 370 (553)
T ss_pred CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 477788888888876633 45899999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhh
Q 024419 74 WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSE 153 (268)
Q Consensus 74 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (268)
++.+++.+|.++...|++++|+..++++++++|.++..+..++.++...|++++|..... ..+... .+
T Consensus 371 ~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~--~~l~~~----------~p 438 (553)
T PRK12370 371 SADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGD--ELRSQH----------LQ 438 (553)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHH--HHHHhc----------cc
Confidence 999999999999999999999999999999999998877776766777888888866521 111000 01
Q ss_pred hcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH----------HHHHhhhhhhhHhhhhHHhcCCccc-cCccchhHH
Q 024419 154 KYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAF-ESPHTHGSC 222 (268)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~ 222 (268)
.........+.++...|++++|...+.+.....|. .|...| +.+...++.++...... ........+
T Consensus 439 ~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~ 516 (553)
T PRK12370 439 DNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLV 516 (553)
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHH
Confidence 11222344566666789999999999988777765 122223 46666666655542211 112224555
Q ss_pred HHHHHHH--HHHHHHHHh
Q 024419 223 FQFLRQY--ADDSFSSAA 238 (268)
Q Consensus 223 ~~~~~~~--a~~~~~ka~ 238 (268)
+...|+- +.-. +++.
T Consensus 517 ~~~~g~~~~~~~~-~~~~ 533 (553)
T PRK12370 517 LVAHGEAIAEKMW-NKFK 533 (553)
T ss_pred HHHHhhhHHHHHH-HHhh
Confidence 5555533 4444 6665
No 28
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.77 E-value=9.9e-17 Score=147.34 Aligned_cols=216 Identities=10% Similarity=-0.057 Sum_probs=93.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHH
Q 024419 14 GNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDD 93 (268)
Q Consensus 14 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 93 (268)
|..+...|++++|+..|++++...|.+ ..++.+|.++...|++++|+..|++++..+|++...+..++......|++++
T Consensus 516 A~al~~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~e 594 (987)
T PRK09782 516 AYQAYQVEDYATALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPEL 594 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHH
Confidence 333344444444444444443333322 2234444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHHHHHHHHH
Q 024419 94 ALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETME 173 (268)
Q Consensus 94 A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (268)
|+..|+++++++|+ +.++..++.++...|++++|+.... . ...+.+.........+.+....++++
T Consensus 595 Al~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~--~-----------AL~l~Pd~~~a~~nLG~aL~~~G~~e 660 (987)
T PRK09782 595 ALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLR--A-----------ALELEPNNSNYQAALGYALWDSGDIA 660 (987)
T ss_pred HHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHH--H-----------HHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 44444444444443 4444444444444444444433310 0 00111112222333333344445555
Q ss_pred HHHHhhhhhhhchhH----------HHHHhhhhhhhHhhhhHHhcCCccccCc-cchhHHHHHHHHH--HHHHHHHHhhh
Q 024419 174 TAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAFESP-HTHGSCFQFLRQY--ADDSFSSAACL 240 (268)
Q Consensus 174 ~A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--a~~~~~ka~~~ 240 (268)
+|+..+.+++.++|. ++..+|+++.|+..+++++.++|..... ...|........+ +.+.+.++. .
T Consensus 661 eAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~-~ 739 (987)
T PRK09782 661 QSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRW-T 739 (987)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHh-h
Confidence 555555555555543 3444455555555555555555443111 1133333333333 445555555 5
Q ss_pred hCCCC
Q 024419 241 VAPKS 245 (268)
Q Consensus 241 ~~p~~ 245 (268)
++|+.
T Consensus 740 ~~~~~ 744 (987)
T PRK09782 740 FSFDS 744 (987)
T ss_pred cCccc
Confidence 55544
No 29
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.77 E-value=7.7e-17 Score=146.82 Aligned_cols=241 Identities=10% Similarity=0.088 Sum_probs=182.0
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 82 (268)
.|..+.++..+|..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++..+|+++. +..+|
T Consensus 45 ~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la 123 (765)
T PRK10049 45 MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALA 123 (765)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHH
Confidence 45667789999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhh-------HHH---------------
Q 024419 83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSN-------VDM--------------- 140 (268)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~--------------- 140 (268)
.++...|++++|+..++++++.+|+++.++..++.++...+..+.|......... +..
T Consensus 124 ~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~ 203 (765)
T PRK10049 124 YVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTR 203 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhccccc
Confidence 9999999999999999999999999999999999998877777766644321000 000
Q ss_pred ---------hhhHHHHHHHhhh--hcCch--hhh------HHHHHHHHHHHHHHHHhhhhhhhch---hH--------HH
Q 024419 141 ---------VQHLDEFKSEMSE--KYGAE--ECW------KHVFSFVVETMETAVKSWHETSKVD---AK--------VY 190 (268)
Q Consensus 141 ---------~~~~~~~~~~~~~--~~~~~--~~~------~~~~~~~~~~~~~A~~~~~~~~~~~---~~--------~~ 190 (268)
...+..+...+.. ..... ... .+. ....+++++|+..|++.+... |. +|
T Consensus 204 ~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~-Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~y 282 (765)
T PRK10049 204 SEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGA-LLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAY 282 (765)
T ss_pred ChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHH-HHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHH
Confidence 0001111110100 00000 111 122 345688999999999988774 43 57
Q ss_pred HHhhhhhhhHhhhhHHhcCCccccCc--cch---hHHHHHHHHH--HHHHHHHHhhhhCCCCc
Q 024419 191 FLLDKEKTDTEKYAPIVNVDKAFESP--HTH---GSCFQFLRQY--ADDSFSSAACLVAPKSI 246 (268)
Q Consensus 191 ~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~--a~~~~~ka~~~~~p~~~ 246 (268)
..+|+.++|+..|++++..+|..... ... ...+...+++ |...++++. ...|...
T Consensus 283 l~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~-~~~P~~~ 344 (765)
T PRK10049 283 LKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTI-NNSPPFL 344 (765)
T ss_pred HhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHh-hcCCceE
Confidence 78999999999999999877654111 112 2233444566 899999999 8888653
No 30
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.77 E-value=4.6e-17 Score=149.48 Aligned_cols=204 Identities=13% Similarity=0.014 Sum_probs=168.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024419 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILE 86 (268)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 86 (268)
...++..|..+...|++++|+.+|+++++.+|.+...+..++.....+|++++|+..|++++.++|+ +.++..+|.++.
T Consensus 542 ~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~ 620 (987)
T PRK09782 542 NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYR 620 (987)
T ss_pred cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHH
Confidence 3457788999999999999999999999999999888888888888889999999999999999996 999999999999
Q ss_pred HccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHH
Q 024419 87 AMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFS 166 (268)
Q Consensus 87 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (268)
+.|++++|+..|++++.++|+++.++..+|.++...|++++|+.... . ...+.+.........+...
T Consensus 621 ~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~--~-----------AL~l~P~~~~a~~nLA~al 687 (987)
T PRK09782 621 QRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLE--R-----------AHKGLPDDPALIRQLAYVN 687 (987)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH--H-----------HHHhCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999976531 1 1123344455567778888
Q ss_pred HHHHHHHHHHHhhhhhhhchhH----------HHHHhhhhhhhHhhhhHHhcCCccccCccchhHHHH
Q 024419 167 FVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQ 224 (268)
Q Consensus 167 ~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (268)
...+++++|+..+++++.+.|+ +.....++..+.+.|.+...+++....+...|..+.
T Consensus 688 ~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~a~~~~g~~~~ 755 (987)
T PRK09782 688 QRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSSIGLRSGAMST 755 (987)
T ss_pred HHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccchhccccchHhh
Confidence 8899999999999999999996 233445667777778888888776653333444333
No 31
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1e-16 Score=133.22 Aligned_cols=205 Identities=15% Similarity=0.132 Sum_probs=175.8
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 82 (268)
-|+.+-.|+..|.-|+..|++.+|..+|.++..+||+.+.+|...|..+.-.|+.++|+.+|.+|-++-|....+.+.+|
T Consensus 308 yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlg 387 (611)
T KOG1173|consen 308 YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLG 387 (611)
T ss_pred CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHH
Confidence 47788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhH
Q 024419 83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWK 162 (268)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (268)
.=|..+++++.|.+.|.+++.+.|++|-++..+|-+....+.+.+|..+..... ...+ ....+.. .........
T Consensus 388 mey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l--~~ik---~~~~e~~-~w~p~~~NL 461 (611)
T KOG1173|consen 388 MEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKAL--EVIK---SVLNEKI-FWEPTLNNL 461 (611)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHH--HHhh---hcccccc-chhHHHHhH
Confidence 999999999999999999999999999999999999999999999987643211 1100 0000000 112223455
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhchhH----------HHHHhhhhhhhHhhhhHHhcCCccc
Q 024419 163 HVFSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAF 213 (268)
Q Consensus 163 ~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~~~~ 213 (268)
|....-.+.+++|+..+.+++.+.|. +|..+|+.+.|++.|.+++.++|..
T Consensus 462 GH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 462 GHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN 522 (611)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence 66677789999999999999999987 6889999999999999999999876
No 32
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=3.1e-16 Score=127.72 Aligned_cols=177 Identities=13% Similarity=0.139 Sum_probs=143.0
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 82 (268)
+|....+|..+|.-+...++...|++.|++|++++|.+-++|+++|++|..++-..-|+-.|++|+...|.+...|..||
T Consensus 360 Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG 439 (559)
T KOG1155|consen 360 NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALG 439 (559)
T ss_pred CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 67888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhH
Q 024419 83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWK 162 (268)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (268)
.||.++++.++|+++|.+++.....+..++..||+++..+++.++|.... .+.++.... ..........+..++
T Consensus 440 ~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~y--ek~v~~~~~----eg~~~~~t~ka~~fL 513 (559)
T KOG1155|consen 440 ECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYY--EKYVEVSEL----EGEIDDETIKARLFL 513 (559)
T ss_pred HHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHh----hcccchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999986653 122222110 000111111222334
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhc
Q 024419 163 HVFSFVVETMETAVKSWHETSKV 185 (268)
Q Consensus 163 ~~~~~~~~~~~~A~~~~~~~~~~ 185 (268)
+....-.+++++|-.+....+.-
T Consensus 514 A~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 514 AEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHHHhhcchHHHHHHHHHHhcC
Confidence 44455566666666655554443
No 33
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.73 E-value=2.6e-16 Score=112.38 Aligned_cols=103 Identities=9% Similarity=0.015 Sum_probs=99.7
Q ss_pred hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024419 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC 83 (268)
Q Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 83 (268)
+...+.++..|..++..|++++|...|+-+...||.+...|+++|.|+..+|++.+|+..|.+++.++|+++.+++++|.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 66778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHhhCC
Q 024419 84 ILEAMEQYDDALSAFQTALQYNP 106 (268)
Q Consensus 84 ~~~~~~~~~~A~~~~~~~l~~~p 106 (268)
|+...|+.+.|++.|+.++...-
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999998863
No 34
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.73 E-value=3.8e-16 Score=112.36 Aligned_cols=116 Identities=21% Similarity=0.275 Sum_probs=108.8
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 82 (268)
+|.+....+.+|..++..|++++|+..+++++..+|.++.++..+|.++..+|++++|+..+++++..+|+++.+++.+|
T Consensus 13 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la 92 (135)
T TIGR02552 13 DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAA 92 (135)
T ss_pred ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 57788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024419 83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRV 118 (268)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 118 (268)
.++...|++++|+..|+++++++|++.........+
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 128 (135)
T TIGR02552 93 ECLLALGEPESALKALDLAIEICGENPEYSELKERA 128 (135)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 999999999999999999999999987765444333
No 35
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.73 E-value=3.7e-15 Score=129.96 Aligned_cols=127 Identities=26% Similarity=0.294 Sum_probs=121.4
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024419 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI 84 (268)
Q Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 84 (268)
.....++..|+.++..|++++|..++.++++++|.+..+|..+|.||.++|+.++|...+-.|-.++|.+.+.|..++..
T Consensus 137 ~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladl 216 (895)
T KOG2076|consen 137 PELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADL 216 (895)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHH
Q 024419 85 LEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV 131 (268)
Q Consensus 85 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 131 (268)
..++|++..|+-+|.++++.+|.+.......+.++...|+...|...
T Consensus 217 s~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~ 263 (895)
T KOG2076|consen 217 SEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMET 263 (895)
T ss_pred HHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHH
Confidence 99999999999999999999999999999999999999998887653
No 36
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=6.7e-16 Score=128.52 Aligned_cols=242 Identities=16% Similarity=0.204 Sum_probs=171.1
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024419 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI 84 (268)
Q Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 84 (268)
.+.+.+..++..++...+|.+..+..+..++.+|-+...+...-.|+...|+..+=...-.+.+...|+.+-.|+..|.-
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCY 321 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHH
Confidence 56778888999999999999999999999998887766554433377777777666666677777777777777777777
Q ss_pred HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhh---------------------HHHhhh
Q 024419 85 LEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSN---------------------VDMVQH 143 (268)
Q Consensus 85 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------------------~~~~~~ 143 (268)
|...|++.+|..+|.|+..+||....+|...|..+...++.++|......... +..+..
T Consensus 322 Yl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~ 401 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEK 401 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHH
Confidence 77777777777777777777777777777777777777777776543221000 011111
Q ss_pred HHHHHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH-----------------HHHHhhhhhhhHhhhhHH
Q 024419 144 LDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK-----------------VYFLLDKEKTDTEKYAPI 206 (268)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----------------~~~~~~~~~~a~~~~~~~ 206 (268)
+-.....+.+...-+.-..|++.+-.+.+.+|..+|.+++..-+. ++..++.+.+|+..|+++
T Consensus 402 Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~a 481 (611)
T KOG1173|consen 402 FFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKA 481 (611)
T ss_pred HHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 101111122222223445566777788999999999988732221 577889999999999999
Q ss_pred hcCCccccCccc-hhHHHHHHHHH--HHHHHHHHhhhhCCCCcc
Q 024419 207 VNVDKAFESPHT-HGSCFQFLRQY--ADDSFSSAACLVAPKSII 247 (268)
Q Consensus 207 ~~~~~~~~~~~~-~~~~~~~~~~~--a~~~~~ka~~~~~p~~~~ 247 (268)
+.+.|.....+. .|-++..+|.+ |.+.|.||+ .++|+|+.
T Consensus 482 L~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL-~l~p~n~~ 524 (611)
T KOG1173|consen 482 LLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL-ALKPDNIF 524 (611)
T ss_pred HHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH-hcCCccHH
Confidence 999887754444 78888889988 999999999 99999954
No 37
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.71 E-value=3.1e-15 Score=118.01 Aligned_cols=114 Identities=22% Similarity=0.304 Sum_probs=102.7
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh---HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHH---HH
Q 024419 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP---TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEK---GY 78 (268)
Q Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~ 78 (268)
..+..++.+|..++..|++++|+..|++++..+|.++ .+++.+|.++...|++++|+..|+++++.+|+++. ++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 4578899999999999999999999999999999876 68899999999999999999999999999998765 79
Q ss_pred HHHHHHHHHc--------cCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024419 79 FRKGCILEAM--------EQYDDALSAFQTALQYNPQSAEVSRKIKRV 118 (268)
Q Consensus 79 ~~la~~~~~~--------~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 118 (268)
+.+|.++... |++++|++.|++++..+|++..++..+..+
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~ 158 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRM 158 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHH
Confidence 9999999886 889999999999999999998776544333
No 38
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.7e-15 Score=121.88 Aligned_cols=230 Identities=19% Similarity=0.176 Sum_probs=181.2
Q ss_pred hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHH----------------------------------HH
Q 024419 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNR----------------------------------AA 49 (268)
Q Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~----------------------------------a~ 49 (268)
|.+..-+..+|.+++..|++.+|+..|+++..+||.+....-.. |.
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~ 308 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQ 308 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhh
Confidence 56777888999999999999999999999999999875443333 34
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhH
Q 024419 50 AFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQ 129 (268)
Q Consensus 50 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~ 129 (268)
..+...++..|+..-+|+|..+|++..+++..|.++.++|+.++|+-.|+.+..+.|...++|.+|-.+|...+.+.+|.
T Consensus 309 ~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~ 388 (564)
T KOG1174|consen 309 LLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEAN 388 (564)
T ss_pred hhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHH
Confidence 44455567799999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred HHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHH--HHHHHHHHHHHHHHhhhhhhhchhH----------HHHHhhhhh
Q 024419 130 EVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKH--VFSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEK 197 (268)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~ 197 (268)
... ...+...+ .......-.| +....-..-++|.+.+++++.+.|. ....-|.++
T Consensus 389 ~~A--n~~~~~~~-----------~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~ 455 (564)
T KOG1174|consen 389 ALA--NWTIRLFQ-----------NSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTK 455 (564)
T ss_pred HHH--HHHHHHhh-----------cchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccc
Confidence 542 11111111 1111111111 0111223457788889999999997 355679999
Q ss_pred hhHhhhhHHhcCCccccCccchhHHHHHHHHH--HHHHHHHHhhhhCCCCcc
Q 024419 198 TDTEKYAPIVNVDKAFESPHTHGSCFQFLRQY--ADDSFSSAACLVAPKSII 247 (268)
Q Consensus 198 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--a~~~~~ka~~~~~p~~~~ 247 (268)
+++..+++.+...++...+..+|.++...+.+ |.+.|.+|+ .+||+|-.
T Consensus 456 D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~AL-r~dP~~~~ 506 (564)
T KOG1174|consen 456 DIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKAL-RQDPKSKR 506 (564)
T ss_pred hHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHH-hcCccchH
Confidence 99999999999888766566688888888888 999999999 99999853
No 39
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.71 E-value=4e-15 Score=116.36 Aligned_cols=130 Identities=19% Similarity=0.208 Sum_probs=121.6
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhC--CCCHHHHHH
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLN--PQWEKGYFR 80 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~ 80 (268)
.|.++..+..+|..+...|++++|+..++++++.+|.+..++.++|.++...|++++|+..+++++... |.....+..
T Consensus 61 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 140 (234)
T TIGR02521 61 DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLEN 140 (234)
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHH
Confidence 467788999999999999999999999999999999999999999999999999999999999999864 556788999
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419 81 KGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE 132 (268)
Q Consensus 81 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 132 (268)
+|.++...|++++|...+.+++..+|+++.++..++.++...|++++|....
T Consensus 141 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 192 (234)
T TIGR02521 141 AGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYL 192 (234)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999997653
No 40
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.70 E-value=4.8e-15 Score=110.86 Aligned_cols=126 Identities=19% Similarity=0.190 Sum_probs=118.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024419 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILE 86 (268)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 86 (268)
+.+...+|..|+..|++..|..-+++||+.||++..+|..+|.+|...|+.+.|.+.|++|+.++|++.+++.+.|.-+.
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419 87 AMEQYDDALSAFQTALQY--NPQSAEVSRKIKRVSQLAKDKKRAQEVE 132 (268)
Q Consensus 87 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 132 (268)
.+|++++|...|++++.. .|..+..+.++|.|....|+.+.|.+..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l 162 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYL 162 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHH
Confidence 999999999999999964 4566889999999999999999997764
No 41
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.70 E-value=9.2e-16 Score=125.07 Aligned_cols=194 Identities=18% Similarity=0.179 Sum_probs=167.0
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024419 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCIL 85 (268)
Q Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 85 (268)
++.++.+.|++.+.+|++++|.+.|++++..+.....+++++|..+..+|+.++|+++|-+...+--+++.++++++.+|
T Consensus 489 n~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiy 568 (840)
T KOG2003|consen 489 NAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIY 568 (840)
T ss_pred CHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 45678889999999999999999999999999999999999999999999999999999999888888999999999999
Q ss_pred HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHH
Q 024419 86 EAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVF 165 (268)
Q Consensus 86 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (268)
..+.+...|++.+.++..+-|+++.++..|+.+|...|+..+|..... ..+ ...+..-....|.+.+
T Consensus 569 e~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~y-----------dsy--ryfp~nie~iewl~ay 635 (840)
T KOG2003|consen 569 ELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHY-----------DSY--RYFPCNIETIEWLAAY 635 (840)
T ss_pred HHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhh-----------hcc--cccCcchHHHHHHHHH
Confidence 999999999999999999999999999999999999999888865521 001 1222333445677777
Q ss_pred HHHHHHHHHHHHhhhhhhhchhH----------HHHHhhhhhhhHhhhhHHhcCCcc
Q 024419 166 SFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKA 212 (268)
Q Consensus 166 ~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~~~ 212 (268)
+...+-.++++.+|+++.-+.|. ++...|++.+|++.|+..-...|.
T Consensus 636 yidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpe 692 (840)
T KOG2003|consen 636 YIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPE 692 (840)
T ss_pred HHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCcc
Confidence 88888899999999999888886 566789999999988877665554
No 42
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.70 E-value=1e-15 Score=127.20 Aligned_cols=116 Identities=34% Similarity=0.556 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 024419 9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAM 88 (268)
Q Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 88 (268)
.+...|..++..|+|++|+..|++++..+|++..+++++|.++..+|++++|+..+++++.++|+++.+|+.+|.++..+
T Consensus 4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 47788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 024419 89 EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKD 124 (268)
Q Consensus 89 ~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~ 124 (268)
|++++|+..|+++++++|+++.+...++.+...+..
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~ 119 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAE 119 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999988776643
No 43
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.70 E-value=1.9e-15 Score=132.73 Aligned_cols=236 Identities=14% Similarity=0.137 Sum_probs=151.9
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN-PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK 81 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 81 (268)
.|.+.-+++.+|.+.+..|+|..|+.+|.+++.++|.. ++....+|.|+.++++.+.|+..|.++++++|.++.++..|
T Consensus 160 sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L 239 (1018)
T KOG2002|consen 160 SPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVAL 239 (1018)
T ss_pred CCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHH
Confidence 46777777888888888888888888888888887764 46777778888888888888888888888888888888777
Q ss_pred HHHHHHccC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCch
Q 024419 82 GCILEAMEQ---YDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAE 158 (268)
Q Consensus 82 a~~~~~~~~---~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (268)
|.+-....+ +..+...+.++...+|.||.++..|+.-+...+++..+..+..-..... .. ..-....
T Consensus 240 ~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t---~~-------~~~~aes 309 (1018)
T KOG2002|consen 240 GEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNT---EN-------KSIKAES 309 (1018)
T ss_pred HHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh---hh-------hHHHHHH
Confidence 777665543 5667788888888888888888888877777777777755521100000 00 0011222
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhhchhH-----------HHHHhhhhhhhHhhhhHHhcCCccccCc-cchhHHHHHH
Q 024419 159 ECWKHVFSFVVETMETAVKSWHETSKVDAK-----------VYFLLDKEKTDTEKYAPIVNVDKAFESP-HTHGSCFQFL 226 (268)
Q Consensus 159 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----------~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 226 (268)
.++.|..+..+|++++|-.+|-.+++.+|+ .|...|+.+.+...|+++....|..... ...|..|...
T Consensus 310 ~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~ 389 (1018)
T KOG2002|consen 310 FYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHS 389 (1018)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhh
Confidence 344555556666666666666666666654 3445566666666666666665544111 1144444444
Q ss_pred H------HHHHHHHHHHhhhhCCCCcccc
Q 024419 227 R------QYADDSFSSAACLVAPKSIISY 249 (268)
Q Consensus 227 ~------~~a~~~~~ka~~~~~p~~~~~~ 249 (268)
+ +-|.....+++ +..|.++.+|
T Consensus 390 ~~~~~~~d~a~~~l~K~~-~~~~~d~~a~ 417 (1018)
T KOG2002|consen 390 AKKQEKRDKASNVLGKVL-EQTPVDSEAW 417 (1018)
T ss_pred hhhhHHHHHHHHHHHHHH-hcccccHHHH
Confidence 2 11666666666 6666665544
No 44
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=6.2e-16 Score=128.08 Aligned_cols=122 Identities=42% Similarity=0.687 Sum_probs=116.5
Q ss_pred CchHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 024419 2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK 81 (268)
Q Consensus 2 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 81 (268)
..|.-+......|+.++..|+|..|+..|.++|..+|+++.+|.++|.||.+++++..|+.+.+++++++|+++.+|++.
T Consensus 353 ~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RK 432 (539)
T KOG0548|consen 353 INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRK 432 (539)
T ss_pred hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 35666778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 024419 82 GCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAK 123 (268)
Q Consensus 82 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~ 123 (268)
|.++..+.+|++|+++|+++++++|++.++...+.++...+.
T Consensus 433 g~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~ 474 (539)
T KOG0548|consen 433 GAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQR 474 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999988763
No 45
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.69 E-value=2.2e-15 Score=114.90 Aligned_cols=113 Identities=13% Similarity=0.105 Sum_probs=86.9
Q ss_pred cCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHccC--HHHHHH
Q 024419 20 AGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCIL-EAMEQ--YDDALS 96 (268)
Q Consensus 20 ~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~~~--~~~A~~ 96 (268)
.++.++++..+++++..+|+++..|..+|.+|...|++++|+..|++++.++|+++.++..+|.++ ...|+ +++|+.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 566777777788888888888888888888888888888888888888888888887887777764 56566 477888
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419 97 AFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE 132 (268)
Q Consensus 97 ~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 132 (268)
.++++++.+|+++.++..+|..+...|++++|+...
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 888888888888888888887777777777776653
No 46
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.68 E-value=5.7e-15 Score=129.75 Aligned_cols=243 Identities=13% Similarity=0.152 Sum_probs=126.6
Q ss_pred hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-HHHHH
Q 024419 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPS---NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW-EKGYF 79 (268)
Q Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~ 79 (268)
|.++.++.-+++.++..|+|+.+......++..... -++.++.+|.+|..+|+|++|..+|.++++.+|++ .-+++
T Consensus 267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~ 346 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLV 346 (1018)
T ss_pred CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccccc
Confidence 445555555555555555555555555555554322 22345555555555555555555555555555555 45555
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH----HHHHhHHHHh-----hhhhHHHh---------
Q 024419 80 RKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAK----DKKRAQEVEN-----IRSNVDMV--------- 141 (268)
Q Consensus 80 ~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~----~~~~a~~~~~-----~~~~~~~~--------- 141 (268)
++|..+...|+++.|+.+|+++++..|++.+....||.+|...+ ..+.|..+.. .....+..
T Consensus 347 GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~ 426 (1018)
T KOG2002|consen 347 GLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQ 426 (1018)
T ss_pred chhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHh
Confidence 55555555555555555555555555555555555555554432 1112211100 00000000
Q ss_pred ----hhHHHHHHHh-------hhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhc-----hhH---------------HH
Q 024419 142 ----QHLDEFKSEM-------SEKYGAEECWKHVFSFVVETMETAVKSWHETSKV-----DAK---------------VY 190 (268)
Q Consensus 142 ----~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~---------------~~ 190 (268)
..+..+...+ ..-........+..++..|.+++|..+|..++.. +++ +.
T Consensus 427 ~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~ 506 (1018)
T KOG2002|consen 427 TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLL 506 (1018)
T ss_pred cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHH
Confidence 0000000000 0011122344556677788888888888877654 111 23
Q ss_pred HHhhhhhhhHhhhhHHhcCCccccCccchhHHHHHHH--HH-HHHHHHHHhhhhCCCCcc
Q 024419 191 FLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLR--QY-ADDSFSSAACLVAPKSII 247 (268)
Q Consensus 191 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-a~~~~~ka~~~~~p~~~~ 247 (268)
..++++..|.+.|..++...|.++..+..-.+..... .+ |...+..++ ..|..|..
T Consensus 507 E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l-~~d~~np~ 565 (1018)
T KOG2002|consen 507 EELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDAL-NIDSSNPN 565 (1018)
T ss_pred HhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHH-hcccCCcH
Confidence 3556666777888888888888765554222333222 34 888999999 88887743
No 47
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.68 E-value=1.9e-14 Score=131.33 Aligned_cols=238 Identities=13% Similarity=0.081 Sum_probs=174.2
Q ss_pred hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024419 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC 83 (268)
Q Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 83 (268)
|.++.-......+....|++++|++.+.++...+|....++..+|.++...|++++|+..|++++..+|.++.++..+|.
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~ 91 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLIL 91 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 44555666777888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHH---HHHhhhhcCchhh
Q 024419 84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEF---KSEMSEKYGAEEC 160 (268)
Q Consensus 84 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 160 (268)
++...|++++|+..++++++.+|+++. +..++.++...|+.++|..... ..+...+..... ...+....+....
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~--~al~~~P~~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMT--QALPRAPQTQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHCCChHH
Confidence 999999999999999999999999999 9999999999999999876532 111111111000 0111111111100
Q ss_pred hHHH----------------------H--H-----HHHHHH---HHHHHhhhhhhhc---hhH--------------HHH
Q 024419 161 WKHV----------------------F--S-----FVVETM---ETAVKSWHETSKV---DAK--------------VYF 191 (268)
Q Consensus 161 ~~~~----------------------~--~-----~~~~~~---~~A~~~~~~~~~~---~~~--------------~~~ 191 (268)
+... + . ...+++ ++|+..+++.+.. +|. .+.
T Consensus 169 Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll 248 (765)
T PRK10049 169 ALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALL 248 (765)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHH
Confidence 0000 0 0 011223 6677777776644 221 134
Q ss_pred HhhhhhhhHhhhhHHhcCCcc---ccCccchhHHHHHHHHH--HHHHHHHHhhhhCCCCc
Q 024419 192 LLDKEKTDTEKYAPIVNVDKA---FESPHTHGSCFQFLRQY--ADDSFSSAACLVAPKSI 246 (268)
Q Consensus 192 ~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--a~~~~~ka~~~~~p~~~ 246 (268)
..|+.++|+..|++++...+. ... ...+.++...+++ |+..|++++ ..+|.+.
T Consensus 249 ~~g~~~eA~~~~~~ll~~~~~~P~~a~-~~la~~yl~~g~~e~A~~~l~~~l-~~~p~~~ 306 (765)
T PRK10049 249 ARDRYKDVISEYQRLKAEGQIIPPWAQ-RWVASAYLKLHQPEKAQSILTELF-YHPETIA 306 (765)
T ss_pred HhhhHHHHHHHHHHhhccCCCCCHHHH-HHHHHHHHhcCCcHHHHHHHHHHh-hcCCCCC
Confidence 667899999999999887532 211 1146677777777 999999999 8888763
No 48
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.67 E-value=5.6e-15 Score=110.52 Aligned_cols=130 Identities=18% Similarity=0.137 Sum_probs=122.2
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh--CCCCHHHHHH
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL--NPQWEKGYFR 80 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~ 80 (268)
-|+...++..++..|...|+.+.|-+.|++|++++|++++++.|.|.-++.+|++++|...|++|+.. -|.-+.++-+
T Consensus 65 DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN 144 (250)
T COG3063 65 DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLEN 144 (250)
T ss_pred CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhh
Confidence 47788999999999999999999999999999999999999999999999999999999999999984 3445789999
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419 81 KGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE 132 (268)
Q Consensus 81 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 132 (268)
+|.|..+.|+++.|.+.|+++|+++|+++.....++..+...|++..|..+.
T Consensus 145 ~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 145 LGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred hHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHH
Confidence 9999999999999999999999999999999999999999999999987663
No 49
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.67 E-value=1.7e-14 Score=122.24 Aligned_cols=259 Identities=15% Similarity=0.109 Sum_probs=184.9
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 82 (268)
+|.+.+.++......+.+.+++.|...+.++....| ..++|+.-+.....+++.++|+..++.+++..|++...|..+|
T Consensus 614 ~pnseeiwlaavKle~en~e~eraR~llakar~~sg-TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlG 692 (913)
T KOG0495|consen 614 NPNSEEIWLAAVKLEFENDELERARDLLAKARSISG-TERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLG 692 (913)
T ss_pred CCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCC-cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHh
Confidence 455556666666666777777777777777766544 4467777788888899999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhh-hHHHhhhHHHHHHHhhhhcCchhhh
Q 024419 83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRS-NVDMVQHLDEFKSEMSEKYGAEECW 161 (268)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (268)
.++.++++.+.|.+.|...++..|+++..|..|+.+....|+..+|..+..... .-.....+..-...+....|.....
T Consensus 693 Qi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a 772 (913)
T KOG0495|consen 693 QIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQA 772 (913)
T ss_pred HHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHH
Confidence 999999999999999999999999999999999999999998888877643111 1111112222222233445555555
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhchhH--------------------------HHHHhhhhhhhHhhhhHHhcCCccccC
Q 024419 162 KHVFSFVVETMETAVKSWHETSKVDAK--------------------------VYFLLDKEKTDTEKYAPIVNVDKAFES 215 (268)
Q Consensus 162 ~~~~~~~~~~~~~A~~~~~~~~~~~~~--------------------------~~~~~~~~~~a~~~~~~~~~~~~~~~~ 215 (268)
...+...++.+..+-..|..++.+.|. .++...++++|.+.|.+++.++|++
T Consensus 773 ~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~-- 850 (913)
T KOG0495|consen 773 ELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDN-- 850 (913)
T ss_pred HHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc--
Confidence 444455555555554555555555543 4777788999999999999998877
Q ss_pred ccchhHHHHHHHHH-----HHHHHHHHhhhhCCCCcccccccccccccccchhhc
Q 024419 216 PHTHGSCFQFLRQY-----ADDSFSSAACLVAPKSIISYPQVYKPICLERSRITK 265 (268)
Q Consensus 216 ~~~~~~~~~~~~~~-----a~~~~~ka~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 265 (268)
++....+|.+--+. -.+.|.+.. ..+|.+...|.-+-+.+-..+..+.+
T Consensus 851 GD~wa~fykfel~hG~eed~kev~~~c~-~~EP~hG~~W~avSK~i~n~~~t~~e 904 (913)
T KOG0495|consen 851 GDAWAWFYKFELRHGTEEDQKEVLKKCE-TAEPTHGELWQAVSKDIKNWRKTPEE 904 (913)
T ss_pred chHHHHHHHHHHHhCCHHHHHHHHHHHh-ccCCCCCcHHHHHhhhHHhccCCHHH
Confidence 44444444333222 677888888 88999888888777777666654443
No 50
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.67 E-value=4.2e-15 Score=124.18 Aligned_cols=173 Identities=16% Similarity=0.117 Sum_probs=146.4
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh------------
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL------------ 70 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------------ 70 (268)
.|.++++|..+|.+...+++=..||..++++++++|++..++..+|.+|...|.-.+|..++.+-|..
T Consensus 315 dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~ 394 (579)
T KOG1125|consen 315 DPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGE 394 (579)
T ss_pred ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCc
Confidence 69999999999999999999999999999999999999999999999999888877777766666544
Q ss_pred -----------------------------CC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024419 71 -----------------------------NP--QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVS 119 (268)
Q Consensus 71 -----------------------------~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 119 (268)
+| .+++++..||.+|...|+|+.|+.+|+.+|..+|++...|..||..+
T Consensus 395 ~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtL 474 (579)
T KOG1125|consen 395 NEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATL 474 (579)
T ss_pred cccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHh
Confidence 34 46778888999999999999999999999999999999999999988
Q ss_pred HHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH
Q 024419 120 QLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK 188 (268)
Q Consensus 120 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 188 (268)
....+..+|+..+ .....+.+.+.++.+..|+-...+|.|.+|+++|-.++.+.+.
T Consensus 475 AN~~~s~EAIsAY-------------~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 475 ANGNRSEEAISAY-------------NRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred cCCcccHHHHHHH-------------HHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 7777777775542 1223356677777888888888888888888888888887776
No 51
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.66 E-value=4.5e-15 Score=107.59 Aligned_cols=102 Identities=14% Similarity=0.130 Sum_probs=97.3
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 024419 27 AALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNP 106 (268)
Q Consensus 27 ~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p 106 (268)
...++++++++|++ +..+|.++...|++++|+..|++++.++|.+..++..+|.++...|++++|+..|+++++++|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 46899999999985 667899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhHHH
Q 024419 107 QSAEVSRKIKRVSQLAKDKKRAQEV 131 (268)
Q Consensus 107 ~~~~~~~~l~~~~~~~~~~~~a~~~ 131 (268)
+++.++..+|.++...|++++|+..
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~ 114 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREA 114 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999999999999765
No 52
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.65 E-value=7.1e-15 Score=112.12 Aligned_cols=110 Identities=14% Similarity=0.162 Sum_probs=103.9
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH-HHcCC--hHHHHHHHHHHHhhCCCCHHHHH
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAF-LHLVK--LNKALADAETTISLNPQWEKGYF 79 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~-~~~~~--~~~A~~~~~~al~~~p~~~~~~~ 79 (268)
.|.+++.|..+|.++...|++++|+..|++++.++|+++.++..+|.++ ...|+ +++|+..++++++.+|+++.+++
T Consensus 69 ~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~ 148 (198)
T PRK10370 69 NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALM 148 (198)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHH
Confidence 5889999999999999999999999999999999999999999999985 67787 59999999999999999999999
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHH
Q 024419 80 RKGCILEAMEQYDDALSAFQTALQYNPQSAEVS 112 (268)
Q Consensus 80 ~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 112 (268)
.+|.++...|++++|+..|+++++++|.+..-.
T Consensus 149 ~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~ 181 (198)
T PRK10370 149 LLASDAFMQADYAQAIELWQKVLDLNSPRVNRT 181 (198)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHH
Confidence 999999999999999999999999998876544
No 53
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.2e-15 Score=122.62 Aligned_cols=237 Identities=21% Similarity=0.269 Sum_probs=169.5
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024419 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI 84 (268)
Q Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 84 (268)
..++....+|..++...+|.+|+..|..|++.+|+++..|.+++.+++..++|+.|.-..++.++++|.....+...+.|
T Consensus 47 ~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c 126 (486)
T KOG0550|consen 47 QQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQC 126 (486)
T ss_pred HHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhh
Confidence 45777889999999999999999999999999999999999999999999999999999999999999887777777777
Q ss_pred HHHccCHHHHH----------------------------------------------------HHHHHHHhhCCCCHHHH
Q 024419 85 LEAMEQYDDAL----------------------------------------------------SAFQTALQYNPQSAEVS 112 (268)
Q Consensus 85 ~~~~~~~~~A~----------------------------------------------------~~~~~~l~~~p~~~~~~ 112 (268)
+..+++..+|. +.--..+++++.+.+++
T Consensus 127 ~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al 206 (486)
T KOG0550|consen 127 HLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEAL 206 (486)
T ss_pred hhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHH
Confidence 66666555544 33333444444444444
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHH-hhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH---
Q 024419 113 RKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSE-MSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK--- 188 (268)
Q Consensus 113 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--- 188 (268)
..-|.++....+.+.++.... +.+...+........ .....-......|.-.+-.|.+..|-+.|..++.++|.
T Consensus 207 ~vrg~~~yy~~~~~ka~~hf~--qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~ 284 (486)
T KOG0550|consen 207 YVRGLCLYYNDNADKAINHFQ--QALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKK 284 (486)
T ss_pred HhcccccccccchHHHHHHHh--hhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccc
Confidence 444444444443333332211 111111111000000 00001111233344566689999999999999999997
Q ss_pred -----------HHHHhhhhhhhHhhhhHHhcCCccccCccc-hhHHHHHHHHH--HHHHHHHHhhhhCCC
Q 024419 189 -----------VYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--ADDSFSSAACLVAPK 244 (268)
Q Consensus 189 -----------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--a~~~~~ka~~~~~p~ 244 (268)
+...+|+..+|+.++..++.+++.++.+.. .+.|+..++++ |.++|++|+ +...+
T Consensus 285 ~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~-q~~~s 353 (486)
T KOG0550|consen 285 TNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAM-QLEKD 353 (486)
T ss_pred hhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhccc
Confidence 344789999999999999999998876655 78999999999 999999999 87665
No 54
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.63 E-value=7.7e-14 Score=118.07 Aligned_cols=205 Identities=12% Similarity=0.089 Sum_probs=149.6
Q ss_pred hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024419 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC 83 (268)
Q Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 83 (268)
|.+.+.+-.+|..+...|+-++|..+.+.++..|+.+...|+-+|.++....+|++|+++|+.|+.+.|+|...+..++.
T Consensus 38 ~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlsl 117 (700)
T KOG1156|consen 38 PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSL 117 (700)
T ss_pred CccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 67788888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhh-hhHHHhhhHHHHHHHhhhhcCchhhhH
Q 024419 84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIR-SNVDMVQHLDEFKSEMSEKYGAEECWK 162 (268)
Q Consensus 84 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (268)
+..++++++.....-.+.+++.|.+...|..++..+...|++..|..+...- +.....+.-..+.. ......+
T Consensus 118 LQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~------se~~Ly~ 191 (700)
T KOG1156|consen 118 LQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEH------SELLLYQ 191 (700)
T ss_pred HHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHH------HHHHHHH
Confidence 9999999999999999999999999999999999988888888887663211 11110000000000 0011111
Q ss_pred HHHHHHHHHHHHHHHhhhhh----------hhchhHHHHHhhhhhhhHhhhhHHhcCCcccc
Q 024419 163 HVFSFVVETMETAVKSWHET----------SKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFE 214 (268)
Q Consensus 163 ~~~~~~~~~~~~A~~~~~~~----------~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 214 (268)
.....-.+..++|+++..+. ......++..+++.++|...|..++..+|+.+
T Consensus 192 n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~ 253 (700)
T KOG1156|consen 192 NQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNL 253 (700)
T ss_pred HHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhH
Confidence 11122223344444443321 11112367889999999999999999999773
No 55
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.63 E-value=4.4e-14 Score=120.25 Aligned_cols=230 Identities=13% Similarity=0.140 Sum_probs=166.8
Q ss_pred hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh-----
Q 024419 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ--------DPSNPTLFSNRAAAFLHLVKLNKALADAETTISL----- 70 (268)
Q Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----- 70 (268)
|.-..+...+|..|..+|+|+.|+..+++++.. .|.-......+|.+|..++++.+|+..|++|+.+
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~ 275 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF 275 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 556677888999999999999999999999998 5555566667999999999999999999999986
Q ss_pred ---CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHH
Q 024419 71 ---NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYN--------PQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVD 139 (268)
Q Consensus 71 ---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--------p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 139 (268)
+|..+.++.+||.+|...|+|++|..++++++++- |.-...+..++.++...+.+++|..+... ...
T Consensus 276 G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~--al~ 353 (508)
T KOG1840|consen 276 GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQK--ALK 353 (508)
T ss_pred CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHH--HHH
Confidence 55567889999999999999999999999999873 23355677888888888999999877431 111
Q ss_pred HhhhHHHHHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH------------------HHHHhhhhhhhHh
Q 024419 140 MVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK------------------VYFLLDKEKTDTE 201 (268)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------------------~~~~~~~~~~a~~ 201 (268)
... .............+...+..+..+|++.+|.+.+++++..... .|...+++.+|..
T Consensus 354 i~~---~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~ 430 (508)
T KOG1840|consen 354 IYL---DAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQ 430 (508)
T ss_pred HHH---hhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHH
Confidence 100 0000111123344556666777889999999999888877643 3566778888888
Q ss_pred hhhHHhcCCccccCcc-c-------hhHHHHHHHHH--HHHHHHHHh
Q 024419 202 KYAPIVNVDKAFESPH-T-------HGSCFQFLRQY--ADDSFSSAA 238 (268)
Q Consensus 202 ~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~~--a~~~~~ka~ 238 (268)
.|..+..+.+...... . ++..|..+|.| |.+.-++++
T Consensus 431 l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 431 LFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 8888888753332111 1 44455555555 444444444
No 56
>PLN02789 farnesyltranstransferase
Probab=99.63 E-value=4.9e-14 Score=114.79 Aligned_cols=118 Identities=16% Similarity=0.138 Sum_probs=79.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcC-ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCH-
Q 024419 14 GNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLV-KLNKALADAETTISLNPQWEKGYFRKGCILEAMEQY- 91 (268)
Q Consensus 14 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~- 91 (268)
-.++...+++++|+..+.++++++|.+..+|..+|.++..+| ++++++..+.++++.+|++..+|..++.++...|+.
T Consensus 44 ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 44 RAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchh
Confidence 334455566677777777777777777777777777776666 456777777777777777777777777666666653
Q ss_pred -HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHH
Q 024419 92 -DDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV 131 (268)
Q Consensus 92 -~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 131 (268)
+++++.+.++++.+|+|..+|...+.+....+.++++.+.
T Consensus 124 ~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~ 164 (320)
T PLN02789 124 ANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEY 164 (320)
T ss_pred hHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHH
Confidence 5566666677777777777777777777666666666443
No 57
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.62 E-value=9.1e-14 Score=124.77 Aligned_cols=127 Identities=11% Similarity=0.044 Sum_probs=114.8
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC--------
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW-------- 74 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-------- 74 (268)
.|.+..++..++..+...+++++|++..+.+++..|+...+++.+|.++.+.+++..|... +++..-+.+
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~ 104 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEH 104 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHH
Confidence 4778899999999999999999999999999999999999999999999999988776655 555554444
Q ss_pred -----------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419 75 -----------EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE 132 (268)
Q Consensus 75 -----------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 132 (268)
..+++.+|.||.++|+.++|...|+++++.+|+|+.++.++|..+... +.++|.++.
T Consensus 105 ~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~ 172 (906)
T PRK14720 105 ICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYL 172 (906)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 489999999999999999999999999999999999999999999988 999998764
No 58
>PLN02789 farnesyltranstransferase
Probab=99.62 E-value=1.9e-13 Score=111.41 Aligned_cols=120 Identities=12% Similarity=0.086 Sum_probs=113.6
Q ss_pred chHhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCh--HHHHHHHHHHHhhCCCCHHHHH
Q 024419 3 AEAEEMSLKDKGNEFFKAG-NYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKL--NKALADAETTISLNPQWEKGYF 79 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~--~~A~~~~~~al~~~p~~~~~~~ 79 (268)
+|.+..++..+|.++...| ++++|+..++++++.+|++..+|.+++.++..+|+. ++++.++.+++..+|+|..+|.
T Consensus 67 nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~ 146 (320)
T PLN02789 67 NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWS 146 (320)
T ss_pred CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHH
Confidence 6889999999999999998 689999999999999999999999999999999874 7889999999999999999999
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 024419 80 RKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA 122 (268)
Q Consensus 80 ~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 122 (268)
.+|.++...|++++|++.+.++++.+|.|..+|...+.+....
T Consensus 147 ~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 147 HRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS 189 (320)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999886544
No 59
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=3.4e-14 Score=114.79 Aligned_cols=122 Identities=25% Similarity=0.401 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------------hHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 024419 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---------------PTLFSNRAAAFLHLVKLNKALADAETTISLN 71 (268)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 71 (268)
+......|+.+++.|+|..|+..|++|+..-+.. ..++.|++.|+.++++|..|+..+.++|.++
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~ 287 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD 287 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 5567889999999999999999999998864321 3679999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHh
Q 024419 72 PQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRA 128 (268)
Q Consensus 72 p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a 128 (268)
|+|..++|+.|.++..+|+|+.|+..|+++++++|+|..+...+..+......+.+.
T Consensus 288 ~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~k 344 (397)
T KOG0543|consen 288 PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEK 344 (397)
T ss_pred CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998877766554
No 60
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.61 E-value=2.6e-14 Score=126.97 Aligned_cols=130 Identities=12% Similarity=0.008 Sum_probs=125.6
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 82 (268)
-|.++++++.+|.+....|++++|...++.+++.+|++..++.+++.++.+.+++++|+..+++++..+|+++.+++.+|
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a 161 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEA 161 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 36778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419 83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE 132 (268)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 132 (268)
.++...|++++|+..|++++..+|+++.++..+|.++...|+.++|....
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~ 211 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVL 211 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999987653
No 61
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.60 E-value=1.7e-13 Score=108.32 Aligned_cols=207 Identities=14% Similarity=0.161 Sum_probs=148.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024419 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILE 86 (268)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 86 (268)
-..+......++..|++..||++....|++.|.++..+..++.||...|+...||...+.+-++..++.+.++.++.+++
T Consensus 155 ~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y 234 (504)
T KOG0624|consen 155 HWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLY 234 (504)
T ss_pred HHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 34556667778889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccCHHHHHHHHHHHHhhCCCCHHHHH---HHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHH
Q 024419 87 AMEQYDDALSAFQTALQYNPQSAEVSR---KIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKH 163 (268)
Q Consensus 87 ~~~~~~~A~~~~~~~l~~~p~~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (268)
..|+.+.++...+.+|+++|++...+- .+..+...+...+++++-......+......-...+...+-.-+...-.-
T Consensus 235 ~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c 314 (504)
T KOG0624|consen 235 TVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLC 314 (504)
T ss_pred hhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheee
Confidence 999999999999999999999866544 44444444444444433222222222211111111110000000000000
Q ss_pred HHHHHHHHHHHHHHhhhhhhhchhH----------HHHHhhhhhhhHhhhhHHhcCCccc
Q 024419 164 VFSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAF 213 (268)
Q Consensus 164 ~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~~~~ 213 (268)
..+.-.+.+.+|+..+.+++.++|+ +|..-..++.|+.+|+++.+++++.
T Consensus 315 ~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn 374 (504)
T KOG0624|consen 315 TCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESN 374 (504)
T ss_pred ecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCccc
Confidence 0122246778888888888888886 4667778889999999999887765
No 62
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.60 E-value=1.7e-14 Score=116.75 Aligned_cols=126 Identities=17% Similarity=0.239 Sum_probs=37.7
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHH--------------------------------
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAA-------------------------------- 50 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~-------------------------------- 50 (268)
+|.++..+..+|......++++.|+..|++++..++.++..+..++.+
T Consensus 40 ~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~ 119 (280)
T PF13429_consen 40 PPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQLLQDGDPEEALKLAEKAYERDGDPRYLLSALQL 119 (280)
T ss_dssp ------------------------------------------------------------------------------H-
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHH
Confidence 356666666777777777777777777777777666655444444444
Q ss_pred HHHcCChHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHh
Q 024419 51 FLHLVKLNKALADAETTISLN--PQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRA 128 (268)
Q Consensus 51 ~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a 128 (268)
+...++++++...++++.... |.++..|..+|.++...|++++|+..|+++++++|+++.+...++.++...|+.+++
T Consensus 120 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~ 199 (280)
T PF13429_consen 120 YYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEA 199 (280)
T ss_dssp HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHH
Confidence 444445555555555544332 344555555555555555555555555555555555555555555555444444443
No 63
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.59 E-value=9e-15 Score=118.35 Aligned_cols=128 Identities=16% Similarity=0.162 Sum_probs=85.9
Q ss_pred hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024419 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC 83 (268)
Q Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 83 (268)
|.++..+...|.++...|++++|+..|+++++.+|++..++..++.++...|+++++...+.......|.++..+..+|.
T Consensus 143 ~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~ 222 (280)
T PF13429_consen 143 PDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAA 222 (280)
T ss_dssp -T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 45566777777777777888888888888888888777777777777777777777777777777777777777777777
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHH
Q 024419 84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV 131 (268)
Q Consensus 84 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 131 (268)
++..+|++++|+..|+++++.+|+++..+..++.++...|+.++|..+
T Consensus 223 ~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~ 270 (280)
T PF13429_consen 223 AYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRL 270 (280)
T ss_dssp HHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------
T ss_pred Hhcccccccccccccccccccccccccccccccccccccccccccccc
Confidence 888888888888888888777888888777888877777777777554
No 64
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.59 E-value=1.7e-13 Score=104.68 Aligned_cols=130 Identities=18% Similarity=0.207 Sum_probs=116.2
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 82 (268)
.|++...+...|...+.+|+|..|+..++++....|++.++|..+|.+|.+.|++++|...|.+++++.|..+.+..++|
T Consensus 96 ~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlg 175 (257)
T COG5010 96 YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLG 175 (257)
T ss_pred CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHH
Confidence 56667777778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419 83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE 132 (268)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 132 (268)
..+.-.|+++.|...+.++...-+.+..+..+++.+....|++..|+.+.
T Consensus 176 ms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 176 MSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 99999999999999999998888888999999999998999998887763
No 65
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.59 E-value=8.5e-13 Score=112.33 Aligned_cols=241 Identities=11% Similarity=0.000 Sum_probs=182.5
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH-HHHHHHHHH
Q 024419 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWE-KGYFRKGCI 84 (268)
Q Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~~ 84 (268)
.+......|...+..|+++.|.+...++.+..|+....+...|.+...+|+++.|...+.++.+..|++. .+....+.+
T Consensus 83 k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l 162 (409)
T TIGR00540 83 KAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRI 162 (409)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHH
Confidence 3555677888999999999999999999999999888999999999999999999999999999999885 566777999
Q ss_pred HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhh-h----HHHh------hhHHHH------
Q 024419 85 LEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRS-N----VDMV------QHLDEF------ 147 (268)
Q Consensus 85 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~----~~~~------~~~~~~------ 147 (268)
+...|+++.|...+++.++..|+++.++..++.++...|+++++.+...... . .... .....+
T Consensus 163 ~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~ 242 (409)
T TIGR00540 163 LLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMAD 242 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999998877533111 0 0000 000000
Q ss_pred -----HHHhhhh-------cCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhHHH------------HHhhhhhhhHhhh
Q 024419 148 -----KSEMSEK-------YGAEECWKHVFSFVVETMETAVKSWHETSKVDAKVY------------FLLDKEKTDTEKY 203 (268)
Q Consensus 148 -----~~~~~~~-------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~------------~~~~~~~~a~~~~ 203 (268)
....... ........+......+++++|....+++++..|+.. ...++...+.+..
T Consensus 243 ~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~ 322 (409)
T TIGR00540 243 EGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLI 322 (409)
T ss_pred cCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHH
Confidence 0001111 112233334456668899999999999998877621 1235567788888
Q ss_pred hHHhcCCcccc--Cc-cchhHHHHHHHHH--HHHHHH--HHhhhhCCCCcc
Q 024419 204 APIVNVDKAFE--SP-HTHGSCFQFLRQY--ADDSFS--SAACLVAPKSII 247 (268)
Q Consensus 204 ~~~~~~~~~~~--~~-~~~~~~~~~~~~~--a~~~~~--ka~~~~~p~~~~ 247 (268)
++++...|... .. ...|..+...+++ |.+.|+ +++ ...|++..
T Consensus 323 e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~-~~~p~~~~ 372 (409)
T TIGR00540 323 EKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAAC-KEQLDAND 372 (409)
T ss_pred HHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHh-hcCCCHHH
Confidence 88888877763 11 1367777777788 999999 577 78887644
No 66
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.57 E-value=1.9e-13 Score=95.85 Aligned_cols=107 Identities=19% Similarity=0.245 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHH
Q 024419 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLHLVKLNKALADAETTISLNPQW---EKGYFR 80 (268)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~ 80 (268)
++.++..|..+...|++++|+..|.+++..+|++ ..+++.+|.++...|++++|+..|++++..+|++ +.+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 5688999999999999999999999999999876 5789999999999999999999999999999885 678999
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHH
Q 024419 81 KGCILEAMEQYDDALSAFQTALQYNPQSAEVSR 113 (268)
Q Consensus 81 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 113 (268)
+|.++...|++++|+..++++++..|++..+..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 999999999999999999999999999876543
No 67
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.56 E-value=1.8e-12 Score=109.87 Aligned_cols=240 Identities=12% Similarity=0.015 Sum_probs=170.1
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHH-HHHHHHcCChHHHHHHHHHHHhhCCCCHHH-HHHHHH
Q 024419 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNR-AAAFLHLVKLNKALADAETTISLNPQWEKG-YFRKGC 83 (268)
Q Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~-a~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~la~ 83 (268)
.+...+..|...+..|+|++|.+...++-+..+. +..++.+ +.+..+.|+++.|...+.++.+.+|++..+ ....+.
T Consensus 83 ~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~ 161 (398)
T PRK10747 83 RARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVR 161 (398)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 3456678888999999999999888776664433 4444444 666699999999999999999999998543 445599
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhH-HH-hhhHHH---------HH----
Q 024419 84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNV-DM-VQHLDE---------FK---- 148 (268)
Q Consensus 84 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~~---------~~---- 148 (268)
++...|+++.|+..+++.++.+|+++.++..++.++...|+++++.++....... .. ...... ..
T Consensus 162 l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~ 241 (398)
T PRK10747 162 IQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMA 241 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998653211110 00 000000 00
Q ss_pred -----------HHh---hhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH-----HHH--HhhhhhhhHhhhhHHh
Q 024419 149 -----------SEM---SEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK-----VYF--LLDKEKTDTEKYAPIV 207 (268)
Q Consensus 149 -----------~~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~--~~~~~~~a~~~~~~~~ 207 (268)
..+ ...........+......++.++|.+..+++++..|+ .+- ..++..++++..+..+
T Consensus 242 ~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~l 321 (398)
T PRK10747 242 DQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQI 321 (398)
T ss_pred hcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHH
Confidence 000 0011112223334455678888899988888775544 122 3378888888888888
Q ss_pred cCCccccCcc-chhHHHHHHHHH--HHHHHHHHhhhhCCCCcc
Q 024419 208 NVDKAFESPH-THGSCFQFLRQY--ADDSFSSAACLVAPKSII 247 (268)
Q Consensus 208 ~~~~~~~~~~-~~~~~~~~~~~~--a~~~~~ka~~~~~p~~~~ 247 (268)
...|+..... ..|..+...+++ |.+.|++++ +..|++..
T Consensus 322 k~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al-~~~P~~~~ 363 (398)
T PRK10747 322 KQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAAL-KQRPDAYD 363 (398)
T ss_pred hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hcCCCHHH
Confidence 8877653222 256666666777 999999999 99998753
No 68
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.56 E-value=5.4e-13 Score=113.03 Aligned_cols=237 Identities=15% Similarity=0.167 Sum_probs=176.8
Q ss_pred hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024419 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC 83 (268)
Q Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 83 (268)
|..-..++.++.-.+..++|...+...+..++..|.+++.+-..|..+..+|+-++|....+.++..++.....|..+|.
T Consensus 4 ~~KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl 83 (700)
T KOG1156|consen 4 SPKENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGL 83 (700)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHH
Confidence 33455889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHH
Q 024419 84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKH 163 (268)
Q Consensus 84 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (268)
++...++|++|+++|..|+.++|+|..+|+-++.+...+++++....... ..++ +.+.....+....
T Consensus 84 ~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~--~LLq-----------l~~~~ra~w~~~A 150 (700)
T KOG1156|consen 84 LQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRN--QLLQ-----------LRPSQRASWIGFA 150 (700)
T ss_pred HHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHH--HHHH-----------hhhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999887644321 0011 1111122223333
Q ss_pred HHHHHHHHHHHHHHhhhhhhhch---hH---------------HHHHhhhhhhhHhhhhHHhcCCccc----cCccchhH
Q 024419 164 VFSFVVETMETAVKSWHETSKVD---AK---------------VYFLLDKEKTDTEKYAPIVNVDKAF----ESPHTHGS 221 (268)
Q Consensus 164 ~~~~~~~~~~~A~~~~~~~~~~~---~~---------------~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~ 221 (268)
+.....+.+..|.+..+...+.. |. +..-.|...++.+ ......+.. ......+.
T Consensus 151 vs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale---~L~~~e~~i~Dkla~~e~ka~ 227 (700)
T KOG1156|consen 151 VAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALE---HLLDNEKQIVDKLAFEETKAD 227 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHH---HHHhhhhHHHHHHHHhhhHHH
Confidence 44555666666655554432222 11 2223344444443 333333332 12233677
Q ss_pred HHHHHHHH--HHHHHHHHhhhhCCCCcccccccccccc
Q 024419 222 CFQFLRQY--ADDSFSSAACLVAPKSIISYPQVYKPIC 257 (268)
Q Consensus 222 ~~~~~~~~--a~~~~~ka~~~~~p~~~~~~~~~~~~~~ 257 (268)
++..++++ |...|..-+ ..+|+|...|....+..|
T Consensus 228 l~~kl~~lEeA~~~y~~Ll-~rnPdn~~Yy~~l~~~lg 264 (700)
T KOG1156|consen 228 LLMKLGQLEEAVKVYRRLL-ERNPDNLDYYEGLEKALG 264 (700)
T ss_pred HHHHHhhHHhHHHHHHHHH-hhCchhHHHHHHHHHHHH
Confidence 88888888 999999999 999999988766554444
No 69
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.55 E-value=1.2e-13 Score=99.33 Aligned_cols=105 Identities=11% Similarity=0.130 Sum_probs=100.7
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 024419 28 ALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQ 107 (268)
Q Consensus 28 ~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~ 107 (268)
+.+++++..+|++..+.+.+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++..+|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419 108 SAEVSRKIKRVSQLAKDKKRAQEVE 132 (268)
Q Consensus 108 ~~~~~~~l~~~~~~~~~~~~a~~~~ 132 (268)
++..+..+|.++...|++++|....
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~ 108 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKAL 108 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999997653
No 70
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.55 E-value=6.1e-13 Score=97.55 Aligned_cols=124 Identities=35% Similarity=0.602 Sum_probs=111.4
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH
Q 024419 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN-----PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYF 79 (268)
Q Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 79 (268)
..+..+...|+-+|.+|+|++|..-|..||...|.. ..+|.++|.|..+++.++.|+..+.++|+++|.+..++.
T Consensus 93 ~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~ 172 (271)
T KOG4234|consen 93 EKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALE 172 (271)
T ss_pred HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHH
Confidence 346678889999999999999999999999999975 357889999999999999999999999999999999999
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHh
Q 024419 80 RKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRA 128 (268)
Q Consensus 80 ~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a 128 (268)
++|.+|.++.+|++|++.|+++++.+|....+...+.++-.....-.+.
T Consensus 173 RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEk 221 (271)
T KOG4234|consen 173 RRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEK 221 (271)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHH
Confidence 9999999999999999999999999999998888887776555544443
No 71
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.54 E-value=3.3e-12 Score=100.22 Aligned_cols=224 Identities=13% Similarity=0.113 Sum_probs=159.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-----HHHHHHHHHH
Q 024419 10 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW-----EKGYFRKGCI 84 (268)
Q Consensus 10 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~la~~ 84 (268)
-+-.|..+.-..+.++|++.|...++.+|...++++.+|..+.+.|+.+.||..-+..+ ..|+. .-+...||.-
T Consensus 38 ~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~-~spdlT~~qr~lAl~qL~~D 116 (389)
T COG2956 38 DYVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLL-ESPDLTFEQRLLALQQLGRD 116 (389)
T ss_pred HHHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHh-cCCCCchHHHHHHHHHHHHH
Confidence 35577888888999999999999999999999999999999999999999999765554 45664 4678999999
Q ss_pred HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHH
Q 024419 85 LEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHV 164 (268)
Q Consensus 85 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (268)
|...|-++.|...|....+...--..+...|..+|...++|++|++....-..+ .+. . ........++....
T Consensus 117 ym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~--~~q--~----~~~eIAqfyCELAq 188 (389)
T COG2956 117 YMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKL--GGQ--T----YRVEIAQFYCELAQ 188 (389)
T ss_pred HHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHc--CCc--c----chhHHHHHHHHHHH
Confidence 999999999999999988766666789999999999999999997653210000 000 0 01111233444444
Q ss_pred HHHHHHHHHHHHHhhhhhhhchhH----------HHHHhhhhhhhHhhhhHHhcCCccccC--ccchhHHHHHHHHH--H
Q 024419 165 FSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAFES--PHTHGSCFQFLRQY--A 230 (268)
Q Consensus 165 ~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--a 230 (268)
......+.+.|...+.+++..+|+ ++...|++.+|++.++.+++-+|++.. ...+..+|..+|+. .
T Consensus 189 ~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~ 268 (389)
T COG2956 189 QALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEG 268 (389)
T ss_pred HHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 455566667777777777777765 455666777777777777777776532 22255566666655 4
Q ss_pred HHHHHHHhhhhCC
Q 024419 231 DDSFSSAACLVAP 243 (268)
Q Consensus 231 ~~~~~ka~~~~~p 243 (268)
.....+++ +..+
T Consensus 269 ~~fL~~~~-~~~~ 280 (389)
T COG2956 269 LNFLRRAM-ETNT 280 (389)
T ss_pred HHHHHHHH-HccC
Confidence 55555555 4444
No 72
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.53 E-value=7.5e-14 Score=110.30 Aligned_cols=228 Identities=18% Similarity=0.173 Sum_probs=162.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 024419 9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAM 88 (268)
Q Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 88 (268)
.+..+|+.|+++|.|++||.+|.+++..+|.++..+.++|.+|+++..|..|...+..|+.+|.....+|-++|.+-..+
T Consensus 99 EiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 99 EIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESL 178 (536)
T ss_pred HHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHHHH
Q 024419 89 EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFV 168 (268)
Q Consensus 89 ~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (268)
|+..+|.+.++.+|++.|++.+....++.+.. ..++.-+...... ..+........+ ...-.|.....
T Consensus 179 g~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S----l~E~~I~~KsT~G--~~~A~Q~~~Q~l------~~K~~G~~Fsk 246 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPKNIELKKSLARINS----LRERKIATKSTPG--FTPARQGMIQIL------PIKKPGYKFSK 246 (536)
T ss_pred hhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc----hHhhhHHhhcCCC--CCccccchhhhc------cccCcchhhhh
Confidence 99999999999999999998776665555532 2222111110000 000000011111 01122333445
Q ss_pred HHHHHHHHHhhhhhhhchh---------HHHHHhhhhhhhHhhhhHHhcCCccccCccc-hhHHHHHHHHH--HHHHHHH
Q 024419 169 VETMETAVKSWHETSKVDA---------KVYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--ADDSFSS 236 (268)
Q Consensus 169 ~~~~~~A~~~~~~~~~~~~---------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--a~~~~~k 236 (268)
.+.++.++.++.+.+.... ..|....+++.++....+++..++....... .+.+-..++.. +...|+-
T Consensus 247 ~~~~~~~i~~~~~~~A~~~~~~~L~~~~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T 326 (536)
T KOG4648|consen 247 KAMRSVPVVDVVSPRATIDDSNQLRISDEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQT 326 (536)
T ss_pred hhccccceeEeeccccccCccccCcccHHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhh
Confidence 6777777777765433222 2466677778888888888877665432222 45555666655 8888888
Q ss_pred HhhhhCCCCcccc
Q 024419 237 AACLVAPKSIISY 249 (268)
Q Consensus 237 a~~~~~p~~~~~~ 249 (268)
++ .+.|.+-.+.
T Consensus 327 ~~-~~~P~~~~~~ 338 (536)
T KOG4648|consen 327 AV-KVAPAVETPK 338 (536)
T ss_pred ee-eeccccccch
Confidence 88 8888765443
No 73
>PRK15331 chaperone protein SicA; Provisional
Probab=99.53 E-value=6e-13 Score=95.58 Aligned_cols=110 Identities=16% Similarity=0.106 Sum_probs=101.9
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 82 (268)
++..-+..+..|..++..|++++|...|+-....+|.+.+.|+++|.|+..+++|++|+..|..+..++++++.+.+..|
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ag 112 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTG 112 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHH
Confidence 35567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCHHHHH
Q 024419 83 CILEAMEQYDDALSAFQTALQYNPQSAEVSR 113 (268)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 113 (268)
.|+..+|+.+.|+.+|+.++. .|.+.....
T Consensus 113 qC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~ 142 (165)
T PRK15331 113 QCQLLMRKAAKARQCFELVNE-RTEDESLRA 142 (165)
T ss_pred HHHHHhCCHHHHHHHHHHHHh-CcchHHHHH
Confidence 999999999999999999998 566554443
No 74
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.53 E-value=5.9e-13 Score=104.97 Aligned_cols=126 Identities=19% Similarity=0.237 Sum_probs=113.5
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChH---HHHHHHHHHHHc--------CChHHHHHHHHHHHhhCCCC
Q 024419 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPT---LFSNRAAAFLHL--------VKLNKALADAETTISLNPQW 74 (268)
Q Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~a~~~~~~--------~~~~~A~~~~~~al~~~p~~ 74 (268)
...+++.+|.+++..|++++|+..|+++++.+|+++. +++.+|.++... |++++|++.+++++..+|++
T Consensus 69 ~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 148 (235)
T TIGR03302 69 AEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNS 148 (235)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCC
Confidence 3468899999999999999999999999999998876 799999999987 88999999999999999998
Q ss_pred HHHH-----------------HHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHHHHHHHhHHH
Q 024419 75 EKGY-----------------FRKGCILEAMEQYDDALSAFQTALQYNPQS---AEVSRKIKRVSQLAKDKKRAQEV 131 (268)
Q Consensus 75 ~~~~-----------------~~la~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~~~~~~a~~~ 131 (268)
..++ ..+|.++...|++++|+..|++++...|+. +.++..++.++...|++++|...
T Consensus 149 ~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~ 225 (235)
T TIGR03302 149 EYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDA 225 (235)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6442 467889999999999999999999997765 58999999999999999999765
No 75
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.51 E-value=3.9e-12 Score=107.85 Aligned_cols=232 Identities=8% Similarity=0.003 Sum_probs=154.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 024419 10 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPT-LFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAM 88 (268)
Q Consensus 10 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 88 (268)
+...+......|+++.|..++.++.+.+|++.. .....+.++...|++++|+..++++++.+|+++.++..++.+|...
T Consensus 121 ~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~ 200 (398)
T PRK10747 121 YLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRT 200 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 344466669999999999999999999998854 4445599999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhhCCCCHHHHHHHH-HHH-----HHHHH--HHHhHHH-HhhhhhHHHhhhHHHHHHHhhhhcCchh
Q 024419 89 EQYDDALSAFQTALQYNPQSAEVSRKIK-RVS-----QLAKD--KKRAQEV-ENIRSNVDMVQHLDEFKSEMSEKYGAEE 159 (268)
Q Consensus 89 ~~~~~A~~~~~~~l~~~p~~~~~~~~l~-~~~-----~~~~~--~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (268)
|++++|+..+.+..+..+.++.....+- ..+ ...+. .+..... ..........+.............++..
T Consensus 201 gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~ 280 (398)
T PRK10747 201 GAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHD 280 (398)
T ss_pred HhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHH
Confidence 9999999998888877766544322111 111 00000 0011010 0000000001111111111111111111
Q ss_pred hhHH-----------------HHHHHHHHHHHHHHhhhhhhhchhH----------HHHHhhhhhhhHhhhhHHhcCCcc
Q 024419 160 CWKH-----------------VFSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKA 212 (268)
Q Consensus 160 ~~~~-----------------~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~~~ 212 (268)
.... ......++.+++++..++.++.+|+ ++...+++++|.+.+++++...|+
T Consensus 281 ~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~ 360 (398)
T PRK10747 281 TAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD 360 (398)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 1111 1111236777788888887777776 466778999999999999999988
Q ss_pred ccCccchhHHHHHHHHH--HHHHHHHHhhhhC
Q 024419 213 FESPHTHGSCFQFLRQY--ADDSFSSAACLVA 242 (268)
Q Consensus 213 ~~~~~~~~~~~~~~~~~--a~~~~~ka~~~~~ 242 (268)
.......+.++...|+- |...|++++ .+-
T Consensus 361 ~~~~~~La~~~~~~g~~~~A~~~~~~~l-~~~ 391 (398)
T PRK10747 361 AYDYAWLADALDRLHKPEEAAAMRRDGL-MLT 391 (398)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhh
Confidence 75444577778877766 999999998 653
No 76
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.51 E-value=1e-13 Score=87.44 Aligned_cols=66 Identities=21% Similarity=0.454 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhhCC
Q 024419 41 PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAME-QYDDALSAFQTALQYNP 106 (268)
Q Consensus 41 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~~l~~~p 106 (268)
+.+|..+|.+++..|++++|+..|+++++++|+++.+++++|.++..+| ++++|+..++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3444444444444445555555555555444444444445555544444 34445555555544444
No 77
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.51 E-value=7.6e-12 Score=109.69 Aligned_cols=248 Identities=15% Similarity=0.193 Sum_probs=172.3
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 82 (268)
.|.++.++..+|.++.+.|+.++|+...-.|-.++|++.+.|..++....++|++.+|+-+|.+||+.+|.+....+..+
T Consensus 169 dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers 248 (895)
T KOG2076|consen 169 DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERS 248 (895)
T ss_pred CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 47788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHHHHHHHhHHHHh-hhh---------hHHHh------
Q 024419 83 CILEAMEQYDDALSAFQTALQYNPQS-----AEVSRKIKRVSQLAKDKKRAQEVEN-IRS---------NVDMV------ 141 (268)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~~l~~~p~~-----~~~~~~l~~~~~~~~~~~~a~~~~~-~~~---------~~~~~------ 141 (268)
.+|.++|+...|...|.+++..+|.. ...-...++.+...+.-+.|.+... ... .+...
T Consensus 249 ~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~ 328 (895)
T KOG2076|consen 249 SLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLK 328 (895)
T ss_pred HHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHH
Confidence 99999999999999999999999922 1112222333333333333333211 000 00000
Q ss_pred --------hhHHHHHH----------------------------HhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhc
Q 024419 142 --------QHLDEFKS----------------------------EMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKV 185 (268)
Q Consensus 142 --------~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 185 (268)
..+..... ++..+..-+....+.+.+......+++.++-..-..
T Consensus 329 ~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~ 408 (895)
T KOG2076|consen 329 NKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNV 408 (895)
T ss_pred hHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcC
Confidence 00000000 000000000111222233334444555554433222
Q ss_pred hh-----------HHHHHhhhhhhhHhhhhHHhcCCcccc--CccchhHHHHHHHHH--HHHHHHHHhhhhCCCCccccc
Q 024419 186 DA-----------KVYFLLDKEKTDTEKYAPIVNVDKAFE--SPHTHGSCFQFLRQY--ADDSFSSAACLVAPKSIISYP 250 (268)
Q Consensus 186 ~~-----------~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--a~~~~~ka~~~~~p~~~~~~~ 250 (268)
.| +.+...|++..|+..+..+....+..- ....+|.||..++.| |...|++++ .++|++.++..
T Consensus 409 ~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl-~~~p~~~D~Ri 487 (895)
T KOG2076|consen 409 WVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVL-ILAPDNLDARI 487 (895)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHH-hcCCCchhhhh
Confidence 22 256678999999999998888754332 344489999999988 999999999 99999988765
Q ss_pred c
Q 024419 251 Q 251 (268)
Q Consensus 251 ~ 251 (268)
.
T Consensus 488 ~ 488 (895)
T KOG2076|consen 488 T 488 (895)
T ss_pred h
Confidence 4
No 78
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.51 E-value=9.4e-14 Score=87.63 Aligned_cols=67 Identities=27% Similarity=0.535 Sum_probs=65.3
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcC-ChHHHHHHHHHHHhhCC
Q 024419 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLV-KLNKALADAETTISLNP 72 (268)
Q Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p 72 (268)
++..+..+|..++..|+|++|+..|+++++.+|+++.+++++|.|+..+| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 57899999999999999999999999999999999999999999999999 79999999999999998
No 79
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.51 E-value=1.1e-12 Score=98.25 Aligned_cols=106 Identities=19% Similarity=0.270 Sum_probs=94.6
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYF 79 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 79 (268)
.+..+..++.+|..+...|++++|+.+|+++++..|+. ..++.++|.++...|++++|+..+++++..+|++..++.
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 110 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALN 110 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 35677889999999999999999999999999887653 578999999999999999999999999999999999999
Q ss_pred HHHHHHHHccC--------------HHHHHHHHHHHHhhCCCC
Q 024419 80 RKGCILEAMEQ--------------YDDALSAFQTALQYNPQS 108 (268)
Q Consensus 80 ~la~~~~~~~~--------------~~~A~~~~~~~l~~~p~~ 108 (268)
.+|.++...|+ +++|++.+++++..+|++
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 99999999887 567778888888888876
No 80
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.50 E-value=3.4e-12 Score=115.64 Aligned_cols=171 Identities=11% Similarity=0.037 Sum_probs=134.2
Q ss_pred CchHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 024419 2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK 81 (268)
Q Consensus 2 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 81 (268)
..|..+...+..+...+++|+++.|+..|+++++.+|.++.....+..++...|+.++|+..+++++.-.|........+
T Consensus 29 ~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llal 108 (822)
T PRK14574 29 VNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASA 108 (822)
T ss_pred cCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHH
Confidence 46788999999999999999999999999999999999965545888899999999999999999993334445555555
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhh
Q 024419 82 GCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECW 161 (268)
Q Consensus 82 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (268)
|.++...|++++|++.|+++++.+|+++.++..++.++...++.++|.+... ......+. ....
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~--~l~~~dp~--------------~~~~ 172 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQAT--ELAERDPT--------------VQNY 172 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHH--HhcccCcc--------------hHHH
Confidence 8899999999999999999999999999999999898888888888866521 11111111 1111
Q ss_pred HHH--HHHHHHHHHHHHHhhhhhhhchhH
Q 024419 162 KHV--FSFVVETMETAVKSWHETSKVDAK 188 (268)
Q Consensus 162 ~~~--~~~~~~~~~~A~~~~~~~~~~~~~ 188 (268)
... +....+...+|++.+++++..+|.
T Consensus 173 l~layL~~~~~~~~~AL~~~ekll~~~P~ 201 (822)
T PRK14574 173 MTLSYLNRATDRNYDALQASSEAVRLAPT 201 (822)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHhCCC
Confidence 111 122235555599999999999886
No 81
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.50 E-value=8.2e-13 Score=88.08 Aligned_cols=99 Identities=34% Similarity=0.626 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 024419 9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAM 88 (268)
Q Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 88 (268)
+++.+|..++..|++++|+..++++++..|.+..++..+|.++...+++++|+..+++++...|.+..++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhhCCC
Q 024419 89 EQYDDALSAFQTALQYNPQ 107 (268)
Q Consensus 89 ~~~~~A~~~~~~~l~~~p~ 107 (268)
|+++.|...+.++++.+|+
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 9999999999999998874
No 82
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.49 E-value=1.8e-12 Score=92.78 Aligned_cols=99 Identities=12% Similarity=0.087 Sum_probs=94.0
Q ss_pred HHhcC-CCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH
Q 024419 33 AIKQD-PSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111 (268)
Q Consensus 33 al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 111 (268)
...++ ++..+..+.+|..++..|++++|+..|+.+..++|.+...|++||.|+..+|+|++|+..|.+++.++|+++.+
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~ 105 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQA 105 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH
Confidence 34567 77889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHH
Q 024419 112 SRKIKRVSQLAKDKKRAQEV 131 (268)
Q Consensus 112 ~~~l~~~~~~~~~~~~a~~~ 131 (268)
+.++|.++...|+.+.|.+.
T Consensus 106 ~~~ag~c~L~lG~~~~A~~a 125 (157)
T PRK15363 106 PWAAAECYLACDNVCYAIKA 125 (157)
T ss_pred HHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999765
No 83
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.48 E-value=9.6e-12 Score=94.53 Aligned_cols=122 Identities=14% Similarity=0.133 Sum_probs=109.0
Q ss_pred hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024419 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC 83 (268)
Q Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 83 (268)
|.+.+.....|..+...|++++|+++|+..++-||++..++-..-.+...+|+.-+||+.....++..|.+.++|..++.
T Consensus 83 p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLae 162 (289)
T KOG3060|consen 83 PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAE 162 (289)
T ss_pred CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 56677778888999999999999999999999999999888888888888999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 024419 84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDK 125 (268)
Q Consensus 84 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~ 125 (268)
+|...|+|++|.-+++..+-+.|.++..+..++.++..+|..
T Consensus 163 iY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~ 204 (289)
T KOG3060|consen 163 IYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGA 204 (289)
T ss_pred HHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhH
Confidence 999999999999999999999999999999999988877653
No 84
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=1.6e-13 Score=110.62 Aligned_cols=224 Identities=13% Similarity=0.161 Sum_probs=168.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 024419 42 TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL 121 (268)
Q Consensus 42 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 121 (268)
.-....|..+++..+|..|+..|..|++..|+++..|.+.+.++...++|++|.-..++.++++|..+..+...++++..
T Consensus 50 e~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a 129 (486)
T KOG0550|consen 50 EEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLA 129 (486)
T ss_pred HHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhh
Confidence 44667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCch-----hhhHHHHHHHHHHHHHHHHhhhhhhhchhH--------
Q 024419 122 AKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAE-----ECWKHVFSFVVETMETAVKSWHETSKVDAK-------- 188 (268)
Q Consensus 122 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-------- 188 (268)
.+...+|.+.....+....+..+......+......+ ...........+++++|+..--..+++++.
T Consensus 130 ~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vr 209 (486)
T KOG0550|consen 130 LSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVR 209 (486)
T ss_pred hHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhc
Confidence 9998888766543333333333332222222222112 222233445578888888877777777765
Q ss_pred --HHHHhhhhhhhHhhhhHHhcCCccccCcc-------------chhHHHHHHHHH--HHHHHHHHhhhhCCCCcccccc
Q 024419 189 --VYFLLDKEKTDTEKYAPIVNVDKAFESPH-------------THGSCFQFLRQY--ADDSFSSAACLVAPKSIISYPQ 251 (268)
Q Consensus 189 --~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~--a~~~~~ka~~~~~p~~~~~~~~ 251 (268)
+++..++.++++.+|++++.++|+....- ..|.-...-|.| |.+.|..|| .++|+|......
T Consensus 210 g~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal-~idP~n~~~nak 288 (486)
T KOG0550|consen 210 GLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEAL-NIDPSNKKTNAK 288 (486)
T ss_pred ccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhh-cCCccccchhHH
Confidence 56677888999999999999988652111 123333444555 999999999 999999988888
Q ss_pred cccccccccchhhcc
Q 024419 252 VYKPICLERSRITKV 266 (268)
Q Consensus 252 ~~~~~~~~~~~~~~~ 266 (268)
++.+.+..+.++++.
T Consensus 289 lY~nra~v~~rLgrl 303 (486)
T KOG0550|consen 289 LYGNRALVNIRLGRL 303 (486)
T ss_pred HHHHhHhhhcccCCc
Confidence 888887777666654
No 85
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.47 E-value=2e-11 Score=92.81 Aligned_cols=170 Identities=15% Similarity=0.048 Sum_probs=140.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 024419 9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAM 88 (268)
Q Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 88 (268)
.+-...-+....|+.+.|..++++.....|++.++-...|..+..+|++++|++.|+..+.-||.+...+.+.-.+...+
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~ 133 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQ 133 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHc
Confidence 44455566778899999999999999999999999999999999999999999999999999999999999988899999
Q ss_pred cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHHHH
Q 024419 89 EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFV 168 (268)
Q Consensus 89 ~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (268)
|+--+|++.+...++..|.+.++|..++.+|...+++++|.-..+ ...-+.++.+.....+++..+..|-
T Consensus 134 GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClE------E~ll~~P~n~l~f~rlae~~Yt~gg---- 203 (289)
T KOG3060|consen 134 GKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLE------ELLLIQPFNPLYFQRLAEVLYTQGG---- 203 (289)
T ss_pred CCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHH------HHHHcCCCcHHHHHHHHHHHHHHhh----
Confidence 999999999999999999999999999999999999999965421 1111122222233334444333332
Q ss_pred HHHHHHHHHhhhhhhhchhH
Q 024419 169 VETMETAVKSWHETSKVDAK 188 (268)
Q Consensus 169 ~~~~~~A~~~~~~~~~~~~~ 188 (268)
.+.++.|.++|.++++++|.
T Consensus 204 ~eN~~~arkyy~~alkl~~~ 223 (289)
T KOG3060|consen 204 AENLELARKYYERALKLNPK 223 (289)
T ss_pred HHHHHHHHHHHHHHHHhChH
Confidence 57788899999999999995
No 86
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.46 E-value=2.1e-12 Score=105.74 Aligned_cols=235 Identities=15% Similarity=0.086 Sum_probs=173.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHc--CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024419 10 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP-TLFSNRAAAFLHL--VKLNKALADAETTISLNPQWEKGYFRKGCILE 86 (268)
Q Consensus 10 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~a~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 86 (268)
-..++-.++++|+++.|++.+.-.-+.+.... .+-.+++..++.+ .++..|..+...++.++-.|+.+..+.|.+-+
T Consensus 422 ei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f 501 (840)
T KOG2003|consen 422 EINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAF 501 (840)
T ss_pred hhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceee
Confidence 35678889999999999999887766665543 3456677666664 47889999999999999999999999999999
Q ss_pred HccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHH
Q 024419 87 AMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFS 166 (268)
Q Consensus 87 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (268)
..|++++|.+.|+.+|.-+..+.++++++|..+..+|+.++|...... + -.+......+......++
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~k---------l----h~il~nn~evl~qianiy 568 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLK---------L----HAILLNNAEVLVQIANIY 568 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHH---------H----HHHHHhhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999776310 0 011222233445555567
Q ss_pred HHHHHHHHHHHhhhhhhhchhH----------HHHHhhhhhhhHhhhhHHhcCCccccCccchhHHHHHHHHH---HHHH
Q 024419 167 FVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQY---ADDS 233 (268)
Q Consensus 167 ~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---a~~~ 233 (268)
..+++..+|++.+..+..+-|. .|...|+-.+|.+++-..-...|+....-.+-..|..-.+| ++.+
T Consensus 569 e~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y 648 (840)
T KOG2003|consen 569 ELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINY 648 (840)
T ss_pred HHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHH
Confidence 7788888899988887666553 45566777777777666666666654333333344444455 9999
Q ss_pred HHHHhhhhCCCCccccccccccccccc
Q 024419 234 FSSAACLVAPKSIISYPQVYKPICLER 260 (268)
Q Consensus 234 ~~ka~~~~~p~~~~~~~~~~~~~~~~~ 260 (268)
|++|. -+-|+-.. +|++...|++|
T Consensus 649 ~ekaa-liqp~~~k--wqlmiasc~rr 672 (840)
T KOG2003|consen 649 FEKAA-LIQPNQSK--WQLMIASCFRR 672 (840)
T ss_pred HHHHH-hcCccHHH--HHHHHHHHHHh
Confidence 99999 88887543 55566666666
No 87
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.46 E-value=2.4e-13 Score=89.26 Aligned_cols=82 Identities=23% Similarity=0.398 Sum_probs=74.2
Q ss_pred HcCCHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHH
Q 024419 19 KAGNYLKAAALYTQAIKQDPS--NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALS 96 (268)
Q Consensus 19 ~~~~~~~A~~~~~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~ 96 (268)
.+|+|+.|+..++++++.+|. +...++.+|.|++++|++++|+..+++ +..+|.++..++.+|.|+..+|++++|++
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 468999999999999999995 466788899999999999999999999 88999999999999999999999999999
Q ss_pred HHHHH
Q 024419 97 AFQTA 101 (268)
Q Consensus 97 ~~~~~ 101 (268)
+|+++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99875
No 88
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.45 E-value=6.2e-12 Score=107.27 Aligned_cols=198 Identities=17% Similarity=0.191 Sum_probs=142.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-------
Q 024419 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQ--------DPSNPTLFSNRAAAFLHLVKLNKALADAETTISLN------- 71 (268)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------- 71 (268)
+..+...|..|...++|.+|+..|++|+.+ +|.-+.++.++|.+|...|++++|..++++|+.+-
T Consensus 241 a~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~ 320 (508)
T KOG1840|consen 241 ASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGAS 320 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccC
Confidence 344556999999999999999999999987 45557889999999999999999999999999762
Q ss_pred -CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhh
Q 024419 72 -PQWEKGYFRKGCILEAMEQYDDALSAFQTALQYN--------PQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQ 142 (268)
Q Consensus 72 -p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--------p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 142 (268)
|+-...+..++.++..++++++|+..+++++++. |.-+..+.++|.++..+|++++|.++.+ +.+....
T Consensus 321 ~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k--~ai~~~~ 398 (508)
T KOG1840|consen 321 HPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYK--KAIQILR 398 (508)
T ss_pred hHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHH--HHHHHHH
Confidence 3446778889999999999999999999999863 2336688999999999999999988742 2222111
Q ss_pred hHHHHHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH-----------------HHHHhhhhhhhHhhhhH
Q 024419 143 HLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK-----------------VYFLLDKEKTDTEKYAP 205 (268)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----------------~~~~~~~~~~a~~~~~~ 205 (268)
. .........+.+....+......+.+.+|-..|.++..+.+. .|..+|++++|++.-..
T Consensus 399 ~---~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~ 475 (508)
T KOG1840|consen 399 E---LLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEK 475 (508)
T ss_pred h---cccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 0 000001111222223333334455555566666665555422 57788888888887777
Q ss_pred HhcC
Q 024419 206 IVNV 209 (268)
Q Consensus 206 ~~~~ 209 (268)
++..
T Consensus 476 ~~~~ 479 (508)
T KOG1840|consen 476 VLNA 479 (508)
T ss_pred HHHH
Confidence 7754
No 89
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.45 E-value=6.4e-12 Score=96.09 Aligned_cols=129 Identities=14% Similarity=0.219 Sum_probs=123.4
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 82 (268)
+|.+..+ ...+..+...|+-+.+..+..++...+|.+..++...|......|++.+|+..++++..++|++.++|..+|
T Consensus 63 ~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lg 141 (257)
T COG5010 63 NPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLG 141 (257)
T ss_pred CcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHH
Confidence 5777777 889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419 83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE 132 (268)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 132 (268)
.+|.+.|++++|...|.+++++.|+++.+..+++..+...|+++.|..+.
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~ll 191 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLL 191 (257)
T ss_pred HHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998763
No 90
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.44 E-value=1.7e-12 Score=102.14 Aligned_cols=217 Identities=17% Similarity=0.201 Sum_probs=166.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccC
Q 024419 11 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQ 90 (268)
Q Consensus 11 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 90 (268)
.++|.+|+..|-+.+|...++.+++..| .++.+..++.+|.+..++..|+..|...+...|.++..+...+.++..+++
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh
Confidence 5689999999999999999999999776 677888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHHHHHH
Q 024419 91 YDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVE 170 (268)
Q Consensus 91 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (268)
+++|.+.|+.+++.+|.|.++.--++.-+..-++.+-|..+.. ... .+....+...+..+..-+.-+
T Consensus 306 ~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYR------RiL-------qmG~~speLf~NigLCC~yaq 372 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYR------RIL-------QMGAQSPELFCNIGLCCLYAQ 372 (478)
T ss_pred HHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHH------HHH-------HhcCCChHHHhhHHHHHHhhc
Confidence 9999999999999999999888777777777777777765531 111 122233444455555556667
Q ss_pred HHHHHHHhhhhhhhchh------HHHH-------HhhhhhhhHhhhhHHhcCCccccCccchhHHHHHHHHH--------
Q 024419 171 TMETAVKSWHETSKVDA------KVYF-------LLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQY-------- 229 (268)
Q Consensus 171 ~~~~A~~~~~~~~~~~~------~~~~-------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 229 (268)
+++-++..|.+++.... ++++ ..|+..-|...++.++.-++. |+..+..++..
T Consensus 373 Q~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~------h~ealnNLavL~~r~G~i~ 446 (478)
T KOG1129|consen 373 QIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ------HGEALNNLAVLAARSGDIL 446 (478)
T ss_pred chhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc------hHHHHHhHHHHHhhcCchH
Confidence 78888888888765543 2455 456788888888888876654 45555554433
Q ss_pred -HHHHHHHHhhhhCCCCccc
Q 024419 230 -ADDSFSSAACLVAPKSIIS 248 (268)
Q Consensus 230 -a~~~~~ka~~~~~p~~~~~ 248 (268)
|...+..|- ...|.-...
T Consensus 447 ~Arsll~~A~-s~~P~m~E~ 465 (478)
T KOG1129|consen 447 GARSLLNAAK-SVMPDMAEV 465 (478)
T ss_pred HHHHHHHHhh-hhCcccccc
Confidence 777777787 888875543
No 91
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.44 E-value=7.6e-12 Score=93.38 Aligned_cols=105 Identities=16% Similarity=0.161 Sum_probs=86.4
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 024419 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK 81 (268)
Q Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 81 (268)
..+..++..|..+...|++++|+..|++++.+.|++ +.++.++|.++...|++++|+..+++++.++|.+...+..+
T Consensus 33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~l 112 (168)
T CHL00033 33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence 456778889999999999999999999998886653 45889999999999999999999999999999988888888
Q ss_pred HHHHH-------HccCHH-------HHHHHHHHHHhhCCCCH
Q 024419 82 GCILE-------AMEQYD-------DALSAFQTALQYNPQSA 109 (268)
Q Consensus 82 a~~~~-------~~~~~~-------~A~~~~~~~l~~~p~~~ 109 (268)
|.++. ..|+++ +|+..|++++..+|.+.
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 88888 666766 55666667777777654
No 92
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.44 E-value=2.7e-11 Score=103.15 Aligned_cols=235 Identities=8% Similarity=-0.020 Sum_probs=153.0
Q ss_pred hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP-TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (268)
Q Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 82 (268)
|.....+...|.....+|+++.|.+++.++.+..|++. .+....+.++...|++++|...+++.++.+|+++.++..++
T Consensus 115 ~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~ 194 (409)
T TIGR00540 115 AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAE 194 (409)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 33455677889999999999999999999999999885 57777899999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH-HH---HHHHHHHHhH-HHHh----hhhhHHHhhhHHHHHHHhhh
Q 024419 83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKR-VS---QLAKDKKRAQ-EVEN----IRSNVDMVQHLDEFKSEMSE 153 (268)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~-~~---~~~~~~~~a~-~~~~----~~~~~~~~~~~~~~~~~~~~ 153 (268)
.++...|++++|.+.+.+.++..+.++.....+.. .. ...+..+++. .+.. ........+.+.........
T Consensus 195 ~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~ 274 (409)
T TIGR00540 195 EAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLI 274 (409)
T ss_pred HHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHH
Confidence 99999999999999999999875544433211111 00 1111111110 0000 00000001111111111111
Q ss_pred hcCchh----------------------hhHHHHHHHHHHHHHHHHhhhhhhhchhH------------HHHHhhhhhhh
Q 024419 154 KYGAEE----------------------CWKHVFSFVVETMETAVKSWHETSKVDAK------------VYFLLDKEKTD 199 (268)
Q Consensus 154 ~~~~~~----------------------~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------------~~~~~~~~~~a 199 (268)
..+... ..........++.+.+++.+++.++.+|+ +++..|++++|
T Consensus 275 ~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A 354 (409)
T TIGR00540 275 DCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEA 354 (409)
T ss_pred HCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHH
Confidence 111111 11111111123345556666555555443 46678999999
Q ss_pred Hhhhh--HHhcCCccccCccchhHHHHHHHHH--HHHHHHHHh
Q 024419 200 TEKYA--PIVNVDKAFESPHTHGSCFQFLRQY--ADDSFSSAA 238 (268)
Q Consensus 200 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--a~~~~~ka~ 238 (268)
.++++ .++...|+.......+..+..+|+. |.+.+++++
T Consensus 355 ~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 355 ADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999 5777777765444577888888866 999999987
No 93
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.43 E-value=2.4e-11 Score=108.37 Aligned_cols=141 Identities=7% Similarity=-0.077 Sum_probs=120.7
Q ss_pred HhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHH
Q 024419 34 IKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSR 113 (268)
Q Consensus 34 l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 113 (268)
..-.|.+++++.++|.+..+.|.+++|...++.++++.|++..++..++.++.+.+++++|+..+++++..+|+++.++.
T Consensus 79 ~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~ 158 (694)
T PRK15179 79 VRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREIL 158 (694)
T ss_pred HHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHH
Confidence 34478999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchh
Q 024419 114 KIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDA 187 (268)
Q Consensus 114 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 187 (268)
.++.++..+|++++|++.+. ... ...+.....+...+......|+.++|...|++++....
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~------------~~~-~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFE------------RLS-RQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG 219 (694)
T ss_pred HHHHHHHHhcchHHHHHHHH------------HHH-hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence 99999999999999987742 010 01223334556667777778888888888888876654
No 94
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.42 E-value=4.9e-12 Score=99.54 Aligned_cols=198 Identities=11% Similarity=-0.008 Sum_probs=130.8
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024419 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI 84 (268)
Q Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 84 (268)
..++.+..++.+|-..++...|+..|.+.+...|.++..+...+.++..++++++|.+.|+.+++.+|.|+++.-.+|..
T Consensus 254 ~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~ 333 (478)
T KOG1129|consen 254 PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVG 333 (478)
T ss_pred CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeec
Confidence 34566677777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHh-hhhcCchhhhHH
Q 024419 85 LEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEM-SEKYGAEECWKH 163 (268)
Q Consensus 85 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 163 (268)
|+..++.+-|+.+|+++|++--.+++.+.++|.+-...++++-+.... ........ .....++++..+
T Consensus 334 yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf-----------~RAlstat~~~~aaDvWYNlg 402 (478)
T KOG1129|consen 334 YFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSF-----------QRALSTATQPGQAADVWYNLG 402 (478)
T ss_pred cccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHH-----------HHHHhhccCcchhhhhhhccc
Confidence 777777777777777777777777777777777776666666553221 00011000 122344455555
Q ss_pred HHHHHHHHHHHHHHhhhhhhhchhH---H-------HHHhhhhhhhHhhhhHHhcCCccc
Q 024419 164 VFSFVVETMETAVKSWHETSKVDAK---V-------YFLLDKEKTDTEKYAPIVNVDKAF 213 (268)
Q Consensus 164 ~~~~~~~~~~~A~~~~~~~~~~~~~---~-------~~~~~~~~~a~~~~~~~~~~~~~~ 213 (268)
.+....|++.-|..+|+-++.-+++ . -...|+...|...+..+-...|..
T Consensus 403 ~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m 462 (478)
T KOG1129|consen 403 FVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDM 462 (478)
T ss_pred eeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccc
Confidence 5555667777777777777666665 1 123466677777777776666654
No 95
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.41 E-value=3.1e-11 Score=99.71 Aligned_cols=126 Identities=15% Similarity=0.163 Sum_probs=119.5
Q ss_pred hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024419 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC 83 (268)
Q Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 83 (268)
|....+.+..+...+..|++++|...++..+...|+|+..+...+.++...++..+|++.+++++.++|+...+++++|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 34456788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhH
Q 024419 84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQ 129 (268)
Q Consensus 84 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~ 129 (268)
++.+.|++.+|+..++..+.-+|+++..|..|++.+..+|+..++.
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~ 428 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEAL 428 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHH
Confidence 9999999999999999999999999999999999999998887763
No 96
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.41 E-value=6.1e-11 Score=107.65 Aligned_cols=237 Identities=15% Similarity=0.161 Sum_probs=158.2
Q ss_pred hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024419 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC 83 (268)
Q Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 83 (268)
|.....+...|..+..+|+|++|++.|+++++.+|+++.++..++.++...++.++|+..+++++..+|.+... ..++.
T Consensus 99 n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~lay 177 (822)
T PRK14574 99 NISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSY 177 (822)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHH
Confidence 34455566668899999999999999999999999999999999999999999999999999999999986554 55666
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHH---------H--------------
Q 024419 84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVD---------M-------------- 140 (268)
Q Consensus 84 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~-------------- 140 (268)
++...++..+|++.++++++.+|++..++..+..+....|-...|.++.......- .
T Consensus 178 L~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~ 257 (822)
T PRK14574 178 LNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPT 257 (822)
T ss_pred HHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhccccc
Confidence 66667788779999999999999999998888888777776666655432111000 0
Q ss_pred ----------hhhHHHHHHHhhhhc-Cch----h-----hhHHHHHHHHHHHHHHHHhhhhhhhch---hH--------H
Q 024419 141 ----------VQHLDEFKSEMSEKY-GAE----E-----CWKHVFSFVVETMETAVKSWHETSKVD---AK--------V 189 (268)
Q Consensus 141 ----------~~~~~~~~~~~~~~~-~~~----~-----~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~--------~ 189 (268)
...+..+. .+.... ..+ . .-+-......+++.+++..|+...... |. .
T Consensus 258 ~~~~~r~~~~d~ala~~~-~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ada 336 (822)
T PRK14574 258 RSETERFDIADKALADYQ-NLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASA 336 (822)
T ss_pred ccchhhHHHHHHHHHHHH-HHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHH
Confidence 00000000 000000 001 0 111112344778888888887654222 32 5
Q ss_pred HHHhhhhhhhHhhhhHHhcCCccc-cCccc----hhHHHHHHH--HH--HHHHHHHHhhhhCC
Q 024419 190 YFLLDKEKTDTEKYAPIVNVDKAF-ESPHT----HGSCFQFLR--QY--ADDSFSSAACLVAP 243 (268)
Q Consensus 190 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~--~~--a~~~~~ka~~~~~p 243 (268)
|..+++..+|...|+.++.-++.. ..... .+.+|..+. +| |....++.. ...|
T Consensus 337 yl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~-~~~p 398 (822)
T PRK14574 337 YIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYS-EQTP 398 (822)
T ss_pred HHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHH-hcCC
Confidence 788899999999999988765321 11111 344555554 55 777777777 5333
No 97
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.40 E-value=6.3e-11 Score=100.98 Aligned_cols=205 Identities=14% Similarity=0.018 Sum_probs=167.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024419 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILE 86 (268)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 86 (268)
.+.+..-+.....+++.++|+..++++++..|....+|+.+|.++.++++.+.|.+.|..-++..|..+..|..++.+-.
T Consensus 651 eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleE 730 (913)
T KOG0495|consen 651 ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEE 730 (913)
T ss_pred chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHH
Confidence 45666777788889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHH-----------------H
Q 024419 87 AMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFK-----------------S 149 (268)
Q Consensus 87 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----------------~ 149 (268)
..|+.-.|...++++.-.+|++...|...-+.....|..+.|..+.. +.++.-+..+.+. .
T Consensus 731 k~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lma--kALQecp~sg~LWaEaI~le~~~~rkTks~D 808 (913)
T KOG0495|consen 731 KDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMA--KALQECPSSGLLWAEAIWLEPRPQRKTKSID 808 (913)
T ss_pred HhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHH--HHHHhCCccchhHHHHHHhccCcccchHHHH
Confidence 99999999999999999999999999999999888898888865421 1111111111111 1
Q ss_pred Hhhh--hcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH----------HHHHhhhhhhhHhhhhHHhcCCccc
Q 024419 150 EMSE--KYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAF 213 (268)
Q Consensus 150 ~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~~~~ 213 (268)
.+.. ....+.+..+.+.+....+++|.+.|.++++++|+ .+...|..++-.+.+.+....+|.+
T Consensus 809 ALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~h 884 (913)
T KOG0495|consen 809 ALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTH 884 (913)
T ss_pred HHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC
Confidence 1111 13334566667888999999999999999999998 2335677788888888888888755
No 98
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.39 E-value=1.6e-11 Score=91.57 Aligned_cols=140 Identities=11% Similarity=0.112 Sum_probs=111.9
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCC--hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHccC
Q 024419 16 EFFKAGNYLKAAALYTQAIKQDPSN--PTLFSNRAAAFLHLVKLNKALADAETTISLNPQW---EKGYFRKGCILEAMEQ 90 (268)
Q Consensus 16 ~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~ 90 (268)
.++-.+.|..+...+...++.++.+ ..+++.+|.++..+|++++|+..|++++.+.|+. +.++..+|.++...|+
T Consensus 8 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~ 87 (168)
T CHL00033 8 DNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGE 87 (168)
T ss_pred ccccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCC
Confidence 3455566788888887776666665 6788999999999999999999999999997763 4689999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHHHHHH
Q 024419 91 YDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVE 170 (268)
Q Consensus 91 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (268)
+++|+..+++++.++|.+...+..++.++...+.... ..+.+.....
T Consensus 88 ~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~---------------------------------~~g~~~~A~~ 134 (168)
T CHL00033 88 HTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAI---------------------------------EQGDSEIAEA 134 (168)
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHH---------------------------------HcccHHHHHH
Confidence 9999999999999999999999999998876553211 1222233456
Q ss_pred HHHHHHHhhhhhhhchhH
Q 024419 171 TMETAVKSWHETSKVDAK 188 (268)
Q Consensus 171 ~~~~A~~~~~~~~~~~~~ 188 (268)
.+++|+..|++++..+|.
T Consensus 135 ~~~~a~~~~~~a~~~~p~ 152 (168)
T CHL00033 135 WFDQAAEYWKQAIALAPG 152 (168)
T ss_pred HHHHHHHHHHHHHHhCcc
Confidence 677788888888877775
No 99
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.39 E-value=2.4e-12 Score=80.09 Aligned_cols=63 Identities=29% Similarity=0.461 Sum_probs=34.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 024419 12 DKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW 74 (268)
Q Consensus 12 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 74 (268)
.+|..++..|++++|+..|+++++.+|+++.+++.+|.|+..+|++++|+..|+++++.+|++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 345555555555555555555555555555555555555555555555555555555555554
No 100
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.38 E-value=2.5e-12 Score=80.00 Aligned_cols=65 Identities=25% Similarity=0.422 Sum_probs=60.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH
Q 024419 45 SNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSA 109 (268)
Q Consensus 45 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~ 109 (268)
+.+|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999985
No 101
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.38 E-value=3.4e-11 Score=95.42 Aligned_cols=107 Identities=12% Similarity=0.116 Sum_probs=97.5
Q ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC---CHHHHH
Q 024419 7 EMSLKDKGNEF-FKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLHLVKLNKALADAETTISLNPQ---WEKGYF 79 (268)
Q Consensus 7 ~~~~~~~g~~~-~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~ 79 (268)
....+..|..+ +..|+|++|+..|+..++..|++ +.+++.+|.+|+..|++++|+..|+++++..|+ .+++++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 46778888876 66799999999999999999998 579999999999999999999999999999887 478999
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHH
Q 024419 80 RKGCILEAMEQYDDALSAFQTALQYNPQSAEVSR 113 (268)
Q Consensus 80 ~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 113 (268)
.+|.++..+|++++|+..|+++++..|+...+-.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~ 255 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQ 255 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHH
Confidence 9999999999999999999999999999876543
No 102
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.38 E-value=2.2e-10 Score=90.22 Aligned_cols=105 Identities=18% Similarity=0.201 Sum_probs=91.5
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHH---HHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHH
Q 024419 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTL---FSNRAAAFLHLVKLNKALADAETTISLNPQW---EKGYF 79 (268)
Q Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~ 79 (268)
.+..++..|..++..|+|++|++.|++++...|.+..+ .+.+|.+|++.+++++|+..+++.++.+|++ +.+++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 56778899999999999999999999999999988654 4899999999999999999999999999886 57799
Q ss_pred HHHHHHHHcc---------------C---HHHHHHHHHHHHhhCCCCHH
Q 024419 80 RKGCILEAME---------------Q---YDDALSAFQTALQYNPQSAE 110 (268)
Q Consensus 80 ~la~~~~~~~---------------~---~~~A~~~~~~~l~~~p~~~~ 110 (268)
.+|.++...+ + ..+|+..|++.++..|+...
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~y 159 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQY 159 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChh
Confidence 9998875554 1 35688999999999998854
No 103
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=2e-11 Score=95.68 Aligned_cols=108 Identities=19% Similarity=0.200 Sum_probs=80.2
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcC---ChHHHHHHHHHHHhhCCCCHHHHH
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLV---KLNKALADAETTISLNPQWEKGYF 79 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~ 79 (268)
+|.+++.|..+|.+++.+|++..|...|.+|+++.|+++..+..+|.+++... .-.++...+++++..||.++.+.+
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 56777777777777777777777777777777777777777777777766553 245777777777777777777777
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhCCCCHH
Q 024419 80 RKGCILEAMEQYDDALSAFQTALQYNPQSAE 110 (268)
Q Consensus 80 ~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 110 (268)
.+|..++..|+|.+|+..++..+...|.+..
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 7777777777777777777777777766544
No 104
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.38 E-value=5.8e-10 Score=87.81 Aligned_cols=195 Identities=12% Similarity=0.096 Sum_probs=153.1
Q ss_pred hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHH
Q 024419 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN-----PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGY 78 (268)
Q Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 78 (268)
|...++.+.+|+.+.+.|+.+.||.+=+..+. .|+- ..+...+|.=|+..|=++.|...|........--..+.
T Consensus 66 ~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~Al 144 (389)
T COG2956 66 PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGAL 144 (389)
T ss_pred chhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHH
Confidence 56678889999999999999999998766554 5543 46788899999999999999999998887655556788
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhh
Q 024419 79 FRKGCILEAMEQYDDALSAFQTALQYNPQSA-----EVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSE 153 (268)
Q Consensus 79 ~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (268)
-.|-.+|....+|++|++.-++..++.|..- ..+..++..+....+.+.|.... .+. .....
T Consensus 145 qqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l--~kA-----------lqa~~ 211 (389)
T COG2956 145 QQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL--KKA-----------LQADK 211 (389)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH--HHH-----------HhhCc
Confidence 9999999999999999999999999988663 34666676666666777765442 111 11233
Q ss_pred hcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH-----------HHHHhhhhhhhHhhhhHHhcCCcc
Q 024419 154 KYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK-----------VYFLLDKEKTDTEKYAPIVNVDKA 212 (268)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----------~~~~~~~~~~a~~~~~~~~~~~~~ 212 (268)
....+-.-.|.+....|+|+.|++.|+..++.+|. +|..+|+..........+.+..+.
T Consensus 212 ~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 212 KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 44555566777788899999999999999999987 588999999999999888887554
No 105
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=2.1e-11 Score=98.78 Aligned_cols=195 Identities=11% Similarity=0.074 Sum_probs=153.7
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024419 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCIL 85 (268)
Q Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 85 (268)
.+..|+.-|..++..+++..|+.+-.+++..+|.+..++...|.++..+++.++|+-.|+.|..+.|...+.|-.+-.+|
T Consensus 299 ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsY 378 (564)
T KOG1174|consen 299 TASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSY 378 (564)
T ss_pred chhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 35567888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCHHHHHHHHHHHHhhCCCCHHHHHHHH-HHHHH-HHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHH
Q 024419 86 EAMEQYDDALSAFQTALQYNPQSAEVSRKIK-RVSQL-AKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKH 163 (268)
Q Consensus 86 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~-~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (268)
...|++.+|.-.-..++..-|.+..++..+| .+..- -..-++|..+.+ .. ..+.+.+-..-....
T Consensus 379 LA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~e------k~-------L~~~P~Y~~AV~~~A 445 (564)
T KOG1174|consen 379 LAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAE------KS-------LKINPIYTPAVNLIA 445 (564)
T ss_pred HhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHH------hh-------hccCCccHHHHHHHH
Confidence 9999999999999999999999999999887 33221 122344444321 11 111222222333344
Q ss_pred HHHHHHHHHHHHHHhhhhhhhchhH---------HHHHhhhhhhhHhhhhHHhcCCccc
Q 024419 164 VFSFVVETMETAVKSWHETSKVDAK---------VYFLLDKEKTDTEKYAPIVNVDKAF 213 (268)
Q Consensus 164 ~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~~~~a~~~~~~~~~~~~~~ 213 (268)
.+....+.++.+++..++.+...|+ ++.....+.+|.++|..++.++|..
T Consensus 446 EL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 446 ELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred HHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 4556678888888888888877776 4556667788888888888888864
No 106
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.35 E-value=3.5e-11 Score=90.13 Aligned_cols=121 Identities=15% Similarity=0.214 Sum_probs=100.7
Q ss_pred CCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q 024419 38 PSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW---EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRK 114 (268)
Q Consensus 38 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 114 (268)
|..+.+++.+|.++...|++++|+.+|++++...|+. ..++..+|.++...|++++|+..+++++..+|++...+..
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 111 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN 111 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 3567789999999999999999999999999987763 5789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhHHHH
Q 024419 115 IKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKVYF 191 (268)
Q Consensus 115 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 191 (268)
+|.++...++...+... .......+++|+..+.+++..+|..+.
T Consensus 112 lg~~~~~~g~~~~a~~~---------------------------------~~~A~~~~~~A~~~~~~a~~~~p~~~~ 155 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGD---------------------------------QDEAEALFDKAAEYWKQAIRLAPNNYI 155 (172)
T ss_pred HHHHHHHcCChHhHhhC---------------------------------HHHHHHHHHHHHHHHHHHHhhCchhHH
Confidence 99998777766554221 112245678888888888888888543
No 107
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.34 E-value=1.4e-10 Score=89.17 Aligned_cols=107 Identities=21% Similarity=0.268 Sum_probs=88.5
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHH
Q 024419 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLHLVKLNKALADAETTISLNPQW---EKGY 78 (268)
Q Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~ 78 (268)
..++.++..|..++..|+|.+|+..|++++...|++ ..+.+.+|.+++..|+++.|+..+++.++..|++ ..++
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~ 82 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL 82 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 467899999999999999999999999999999876 4789999999999999999999999999999986 4689
Q ss_pred HHHHHHHHHcc-----------CHHHHHHHHHHHHhhCCCCHHH
Q 024419 79 FRKGCILEAME-----------QYDDALSAFQTALQYNPQSAEV 111 (268)
Q Consensus 79 ~~la~~~~~~~-----------~~~~A~~~~~~~l~~~p~~~~~ 111 (268)
+.+|.++.... ...+|+..|+..+...|+++.+
T Consensus 83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~ 126 (203)
T PF13525_consen 83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYA 126 (203)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTH
T ss_pred HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHH
Confidence 99999977653 3457999999999999988654
No 108
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.33 E-value=4.7e-11 Score=99.95 Aligned_cols=172 Identities=19% Similarity=0.112 Sum_probs=120.5
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHH----hhCCCCHHHHHHH
Q 024419 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTI----SLNPQWEKGYFRK 81 (268)
Q Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al----~~~p~~~~~~~~l 81 (268)
..+.....|..+...|++++|+..+++++..+|++..++.. +..+...|++..+.....+++ ..+|....++..+
T Consensus 42 ~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 120 (355)
T cd05804 42 ERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGML 120 (355)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHH
Confidence 34556677888888888888888888888888888877665 555555555444444444444 4566667777788
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhh
Q 024419 82 GCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECW 161 (268)
Q Consensus 82 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (268)
|.++...|++++|+..++++++++|+++.++..++.++...|++++|...... .+...+.. .......+..
T Consensus 121 a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~--~l~~~~~~-------~~~~~~~~~~ 191 (355)
T cd05804 121 AFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMES--WRDTWDCS-------SMLRGHNWWH 191 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHh--hhhccCCC-------cchhHHHHHH
Confidence 88999999999999999999999999999999999999999999999776321 11111100 0000112234
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhchh
Q 024419 162 KHVFSFVVETMETAVKSWHETSKVDA 187 (268)
Q Consensus 162 ~~~~~~~~~~~~~A~~~~~~~~~~~~ 187 (268)
.+.++...|++++|+..+++++...|
T Consensus 192 la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 192 LALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 55667778888888888888765544
No 109
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.30 E-value=2.2e-11 Score=94.93 Aligned_cols=100 Identities=14% Similarity=0.239 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 024419 43 LFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA 122 (268)
Q Consensus 43 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 122 (268)
-+-.-|.-.++.++|.+|+..|.+||.++|.++..|.++|.+|.++|+++.|++.++.++.+||....+|.+||.++..+
T Consensus 83 ~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~ 162 (304)
T KOG0553|consen 83 SLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLAL 162 (304)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHcc
Confidence 34455777888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHhhhhhHHHhhhH
Q 024419 123 KDKKRAQEVENIRSNVDMVQHL 144 (268)
Q Consensus 123 ~~~~~a~~~~~~~~~~~~~~~~ 144 (268)
|++.+|++. +++.++..+..
T Consensus 163 gk~~~A~~a--ykKaLeldP~N 182 (304)
T KOG0553|consen 163 GKYEEAIEA--YKKALELDPDN 182 (304)
T ss_pred CcHHHHHHH--HHhhhccCCCc
Confidence 999999665 34444444433
No 110
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.30 E-value=2.9e-10 Score=95.23 Aligned_cols=195 Identities=11% Similarity=-0.046 Sum_probs=149.5
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYF 79 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 79 (268)
-|+.+.++..+|..+...|+++.|...+.++.+..|.+ .......|.++...|++++|+..+++++..+|++..++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 47889999999999999999999999999999888755 456778899999999999999999999999999987776
Q ss_pred HHHHHHHHccCH----HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhc
Q 024419 80 RKGCILEAMEQY----DDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKY 155 (268)
Q Consensus 80 ~la~~~~~~~~~----~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (268)
. +..+...|++ ..+...+......+|.....+..++.++...|++++|..... ..+. ..+..
T Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~--~al~-----------~~p~~ 147 (355)
T cd05804 82 L-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAAR--RALE-----------LNPDD 147 (355)
T ss_pred H-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHH--HHHh-----------hCCCC
Confidence 5 5555555544 444444444445677778888889999999999999976531 1111 22222
Q ss_pred CchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH--------------HHHHhhhhhhhHhhhhHHhcCCc
Q 024419 156 GAEECWKHVFSFVVETMETAVKSWHETSKVDAK--------------VYFLLDKEKTDTEKYAPIVNVDK 211 (268)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--------------~~~~~~~~~~a~~~~~~~~~~~~ 211 (268)
.......+.+....+++++|+..+.+.+...|. ++...|+.++|...|+.++...+
T Consensus 148 ~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 148 AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 334455666777789999999999988877541 45577999999999999876654
No 111
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.27 E-value=7.9e-11 Score=101.95 Aligned_cols=125 Identities=19% Similarity=0.135 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 024419 8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEA 87 (268)
Q Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 87 (268)
..|...|..+...++-++|.-++.++-.++|..+..|+..|.++...|++.+|.+.|..++.+||+++.....+|.++..
T Consensus 651 ~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle 730 (799)
T KOG4162|consen 651 KLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLE 730 (799)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 45667888888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHH--HHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419 88 MEQYDDALS--AFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE 132 (268)
Q Consensus 88 ~~~~~~A~~--~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 132 (268)
.|+...|.. .+..+++++|.|+++|+.+|.+....|+.++|.+..
T Consensus 731 ~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf 777 (799)
T KOG4162|consen 731 LGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECF 777 (799)
T ss_pred hCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHH
Confidence 999888877 999999999999999999999999999999997764
No 112
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.25 E-value=9.7e-11 Score=101.40 Aligned_cols=107 Identities=18% Similarity=0.198 Sum_probs=101.2
Q ss_pred hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHH--HHHHHHhhCCCCHHHHHHH
Q 024419 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALA--DAETTISLNPQWEKGYFRK 81 (268)
Q Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~--~~~~al~~~p~~~~~~~~l 81 (268)
|..+..++..|..+...|.+++|.+.|..|+.++|+++.....+|.|+.+.|+..-|.. ....+++++|.+.++|+.+
T Consensus 681 ~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~L 760 (799)
T KOG4162|consen 681 PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYL 760 (799)
T ss_pred hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 34567789999999999999999999999999999999999999999999999888888 9999999999999999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCHH
Q 024419 82 GCILEAMEQYDDALSAFQTALQYNPQSAE 110 (268)
Q Consensus 82 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 110 (268)
|.++...|+.+.|.++|..++++++.+|.
T Consensus 761 G~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 761 GEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 99999999999999999999999998864
No 113
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=5e-10 Score=87.91 Aligned_cols=111 Identities=14% Similarity=0.088 Sum_probs=102.9
Q ss_pred CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc---CHHHHHHH
Q 024419 21 GNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAME---QYDDALSA 97 (268)
Q Consensus 21 ~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~A~~~ 97 (268)
.+.+.-+.-++.-+..+|+|+.-|..+|.+|+.+|+++.|...|.+++++.|++++.+..+|.++.... .-.++...
T Consensus 136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 357788888999999999999999999999999999999999999999999999999999999887754 45678999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHH
Q 024419 98 FQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV 131 (268)
Q Consensus 98 ~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 131 (268)
+++++.+||++..+...|+..+...|++.+|...
T Consensus 216 l~~al~~D~~~iral~lLA~~afe~g~~~~A~~~ 249 (287)
T COG4235 216 LRQALALDPANIRALSLLAFAAFEQGDYAEAAAA 249 (287)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHH
Confidence 9999999999999999999999999999999765
No 114
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=99.23 E-value=4.2e-11 Score=75.15 Aligned_cols=65 Identities=22% Similarity=0.257 Sum_probs=32.9
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419 18 FKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (268)
Q Consensus 18 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 82 (268)
+..|++++|+..|++++..+|++..+++.+|.||.+.|++++|...+++++..+|+++.++..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 34455555555555555555555555555555555555555555555555555555444444333
No 115
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.22 E-value=1.6e-09 Score=78.73 Aligned_cols=126 Identities=22% Similarity=0.184 Sum_probs=109.2
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHH
Q 024419 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLHLVKLNKALADAETTISLNPQW---EKGYF 79 (268)
Q Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~ 79 (268)
.+...+..+......++...+...++..++.+|++ ..+.+.+|.+++..|++++|+..|++++...|+. ..+.+
T Consensus 10 ~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l 89 (145)
T PF09976_consen 10 QASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARL 89 (145)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 45566777777778999999999999999999998 5778889999999999999999999999988765 46889
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419 80 RKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE 132 (268)
Q Consensus 80 ~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 132 (268)
++|.++...|++++|+..++. +.-.+-.+.++..+|.++...|++++|....
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y 141 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAY 141 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999999999976 3445556788999999999999999997653
No 116
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=99.22 E-value=5.8e-11 Score=74.48 Aligned_cols=68 Identities=18% Similarity=0.257 Sum_probs=62.3
Q ss_pred HHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024419 51 FLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRV 118 (268)
Q Consensus 51 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 118 (268)
++..|++++|+..|++++..+|++..+++.+|.++...|++++|...+++++..+|+++.++..++.+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 35789999999999999999999999999999999999999999999999999999998888776653
No 117
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=99.22 E-value=1.2e-09 Score=77.07 Aligned_cols=107 Identities=19% Similarity=0.243 Sum_probs=97.1
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH---HHH
Q 024419 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWE---KGY 78 (268)
Q Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~ 78 (268)
..+..++..|...+..|+|.+|++.++.+....|.. ..+.+.+|.+|+..+++++|+..+++-++++|.++ .++
T Consensus 8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~ 87 (142)
T PF13512_consen 8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY 87 (142)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 446789999999999999999999999999998865 57899999999999999999999999999999874 679
Q ss_pred HHHHHHHHHccC---------------HHHHHHHHHHHHhhCCCCHHH
Q 024419 79 FRKGCILEAMEQ---------------YDDALSAFQTALQYNPQSAEV 111 (268)
Q Consensus 79 ~~la~~~~~~~~---------------~~~A~~~~~~~l~~~p~~~~~ 111 (268)
+..|.+++.+.. ..+|...|++.++..|++..+
T Consensus 88 Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 88 YMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 999999999877 888999999999999988654
No 118
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.21 E-value=4.2e-10 Score=74.67 Aligned_cols=89 Identities=19% Similarity=0.320 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 024419 43 LFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA 122 (268)
Q Consensus 43 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 122 (268)
+++.+|.++...|++++|+..++++++..|.+..++..+|.++...+++++|++.+++++...|.+..++..++.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHH
Q 024419 123 KDKKRAQEV 131 (268)
Q Consensus 123 ~~~~~a~~~ 131 (268)
++++.|...
T Consensus 82 ~~~~~a~~~ 90 (100)
T cd00189 82 GKYEEALEA 90 (100)
T ss_pred HhHHHHHHH
Confidence 999988655
No 119
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.20 E-value=9.1e-10 Score=82.15 Aligned_cols=110 Identities=17% Similarity=0.236 Sum_probs=104.4
Q ss_pred CCchHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q 024419 1 MAAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFR 80 (268)
Q Consensus 1 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 80 (268)
|.+...+..++++|..|-..|-+.-|.-.|.+++.+.|.-+.++..+|.-+...|+|+.|.+.|...+++||.+--++.+
T Consensus 59 l~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lN 138 (297)
T COG4785 59 LTDEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLN 138 (297)
T ss_pred CChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhc
Confidence 34556788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCCHH
Q 024419 81 KGCILEAMEQYDDALSAFQTALQYNPQSAE 110 (268)
Q Consensus 81 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 110 (268)
+|..++.-|+++-|.+.+.+-.+.||++|-
T Consensus 139 Rgi~~YY~gR~~LAq~d~~~fYQ~D~~DPf 168 (297)
T COG4785 139 RGIALYYGGRYKLAQDDLLAFYQDDPNDPF 168 (297)
T ss_pred cceeeeecCchHhhHHHHHHHHhcCCCChH
Confidence 999999999999999999999999999975
No 120
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=7.4e-11 Score=88.95 Aligned_cols=100 Identities=27% Similarity=0.420 Sum_probs=95.4
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024419 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI 84 (268)
Q Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 84 (268)
..+.-+...|+.++...+|..|+.+|.++|.++|..+..|.+++.||+++.+++.+....+++++++|+.+.+++.+|.+
T Consensus 8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~ 87 (284)
T KOG4642|consen 8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQW 87 (284)
T ss_pred hHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHH
Confidence 34667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCHHHHHHHHHHHHhh
Q 024419 85 LEAMEQYDDALSAFQTALQY 104 (268)
Q Consensus 85 ~~~~~~~~~A~~~~~~~l~~ 104 (268)
+.....|++|+..++++..+
T Consensus 88 ~l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 88 LLQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred HHhhccccHHHHHHHHHHHH
Confidence 99999999999999999665
No 121
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=99.19 E-value=1.8e-10 Score=73.27 Aligned_cols=66 Identities=24% Similarity=0.450 Sum_probs=40.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q 024419 15 NEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFR 80 (268)
Q Consensus 15 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 80 (268)
.+++.+++|++|++++++++..+|.++..|..+|.|+..+|++++|+..++++++.+|+++.+...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 455566666666666666666666666666666666666666666666666666666665554443
No 122
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=9.8e-10 Score=83.37 Aligned_cols=108 Identities=26% Similarity=0.382 Sum_probs=97.2
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCC----------hHHHHHHHHHHHHcCChHHHHHHHHHH
Q 024419 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ--------DPSN----------PTLFSNRAAAFLHLVKLNKALADAETT 67 (268)
Q Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~----------~~~~~~~a~~~~~~~~~~~A~~~~~~a 67 (268)
...++...|+.++..|+|++|...|+.|+.. .|.+ ...+.|.+.|++..|+|-+++++....
T Consensus 177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei 256 (329)
T KOG0545|consen 177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI 256 (329)
T ss_pred hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence 3567899999999999999999999999743 4443 578899999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHH
Q 024419 68 ISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSR 113 (268)
Q Consensus 68 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 113 (268)
|..+|.|..+++..|.++...-+.++|...|.++|+++|.-..+-.
T Consensus 257 L~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVs 302 (329)
T KOG0545|consen 257 LRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVS 302 (329)
T ss_pred HhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHH
Confidence 9999999999999999999999999999999999999998655433
No 123
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.18 E-value=4.3e-10 Score=93.72 Aligned_cols=89 Identities=12% Similarity=0.142 Sum_probs=85.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 024419 44 FSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAK 123 (268)
Q Consensus 44 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~ 123 (268)
+...|...+..|++++|+..|++++.++|+++.+++.+|.++..+|++++|+..+++++.++|+++.++..+|.++..+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 56678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHH
Q 024419 124 DKKRAQEVE 132 (268)
Q Consensus 124 ~~~~a~~~~ 132 (268)
++++|....
T Consensus 85 ~~~eA~~~~ 93 (356)
T PLN03088 85 EYQTAKAAL 93 (356)
T ss_pred CHHHHHHHH
Confidence 999997663
No 124
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.17 E-value=2.2e-09 Score=83.32 Aligned_cols=107 Identities=16% Similarity=0.261 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHH
Q 024419 8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLHLVKLNKALADAETTISLNPQW---EKGYFRK 81 (268)
Q Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l 81 (268)
.-.++.|..++..|+|..|...|..-++..|++ +.+++.+|.+++.+|+++.|...|..+++-.|++ +++++.+
T Consensus 142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 448999999999999999999999999999986 5899999999999999999999999999998875 6889999
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q 024419 82 GCILEAMEQYDDALSAFQTALQYNPQSAEVSRK 114 (268)
Q Consensus 82 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 114 (268)
|.+...+|+.++|..+|+++++..|+...+-..
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 999999999999999999999999998876543
No 125
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=99.17 E-value=1.8e-09 Score=74.85 Aligned_cols=96 Identities=20% Similarity=0.121 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC---CHHHHHHH
Q 024419 8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLHLVKLNKALADAETTISLNPQ---WEKGYFRK 81 (268)
Q Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l 81 (268)
+++++.|..+-..|+.++|+..|++++...+.. ..+++.+|.++..+|++++|+..+++++...|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 578899999999999999999999999975443 578999999999999999999999999999888 77888889
Q ss_pred HHHHHHccCHHHHHHHHHHHHh
Q 024419 82 GCILEAMEQYDDALSAFQTALQ 103 (268)
Q Consensus 82 a~~~~~~~~~~~A~~~~~~~l~ 103 (268)
+.++...|++++|+..+-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999988888764
No 126
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=99.16 E-value=3e-10 Score=72.28 Aligned_cols=70 Identities=19% Similarity=0.338 Sum_probs=65.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024419 48 AAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKR 117 (268)
Q Consensus 48 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 117 (268)
..+|...+++++|+.++++++.++|+++.++..+|.++..+|++++|+..|+++++..|+++.+....+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 5688999999999999999999999999999999999999999999999999999999999887665443
No 127
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.15 E-value=2.1e-10 Score=98.91 Aligned_cols=128 Identities=13% Similarity=0.117 Sum_probs=118.9
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024419 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI 84 (268)
Q Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 84 (268)
.++.+...+|.....+++|.++..+++..++++|-....|+++|.|..+.++++.|..+|..++.++|++..+|.+++.+
T Consensus 483 ~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~a 562 (777)
T KOG1128|consen 483 ISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTA 562 (777)
T ss_pred hhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHH
Confidence 34555566666777889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419 85 LEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE 132 (268)
Q Consensus 85 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 132 (268)
|...++-.+|...+.++++-+-++..+|.+...+....|.+++|.+..
T Consensus 563 yi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~ 610 (777)
T KOG1128|consen 563 YIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAY 610 (777)
T ss_pred HHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHH
Confidence 999999999999999999999999999999999999999999997653
No 128
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.15 E-value=4.7e-09 Score=91.16 Aligned_cols=125 Identities=17% Similarity=0.177 Sum_probs=107.4
Q ss_pred hHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcC--------ChHHHHHHHHHHHhh--CC
Q 024419 6 EEMSLKDKGNEFFKAGN---YLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLV--------KLNKALADAETTISL--NP 72 (268)
Q Consensus 6 ~~~~~~~~g~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~--------~~~~A~~~~~~al~~--~p 72 (268)
++..++.+|..++..++ ...|+.+|++|++.+|+++.++-.++.++.... +...+.....+++.+ +|
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~ 417 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELN 417 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCc
Confidence 45667889988887665 889999999999999999999999999887653 244666667776664 77
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHH
Q 024419 73 QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV 131 (268)
Q Consensus 73 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 131 (268)
..+.+|.-+|..+...|++++|...+++++.++| +..+|..+|.++...|+.++|.+.
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~ 475 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADA 475 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7888999999999999999999999999999999 578999999999999999999665
No 129
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.15 E-value=1.2e-09 Score=76.30 Aligned_cols=91 Identities=20% Similarity=0.218 Sum_probs=83.8
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHH
Q 024419 41 PTLFSNRAAAFLHLVKLNKALADAETTISLNPQW---EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS---AEVSRK 114 (268)
Q Consensus 41 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~ 114 (268)
+..++.+|..+...|++++|++.|.+++..+|++ ..+++.+|.++...|+++.|+..|++++..+|++ +.++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4678999999999999999999999999999886 5789999999999999999999999999999886 678999
Q ss_pred HHHHHHHHHHHHHhHHH
Q 024419 115 IKRVSQLAKDKKRAQEV 131 (268)
Q Consensus 115 l~~~~~~~~~~~~a~~~ 131 (268)
++.++...++.++|...
T Consensus 82 ~~~~~~~~~~~~~A~~~ 98 (119)
T TIGR02795 82 LGMSLQELGDKEKAKAT 98 (119)
T ss_pred HHHHHHHhCChHHHHHH
Confidence 99999999999998765
No 130
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.13 E-value=4e-09 Score=93.97 Aligned_cols=127 Identities=16% Similarity=0.186 Sum_probs=108.6
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHH------------------------------------HHHHH
Q 024419 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTL------------------------------------FSNRA 48 (268)
Q Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~------------------------------------~~~~a 48 (268)
.-+.++..+|..|....+...|..+|.+|.++||+++.+ |..+|
T Consensus 490 ~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG 569 (1238)
T KOG1127|consen 490 SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRG 569 (1238)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcc
Confidence 345677788888888888888999999999888877533 44566
Q ss_pred HHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHh
Q 024419 49 AAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRA 128 (268)
Q Consensus 49 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a 128 (268)
..|...++..+|+..|+.+++.+|.+...|..+|.+|...|++..|++.|.++..++|.+...-+..+.+....|.+.++
T Consensus 570 ~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkea 649 (1238)
T KOG1127|consen 570 PYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEA 649 (1238)
T ss_pred ccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHH
Confidence 66667777788999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHH
Q 024419 129 QEV 131 (268)
Q Consensus 129 ~~~ 131 (268)
...
T Consensus 650 ld~ 652 (1238)
T KOG1127|consen 650 LDA 652 (1238)
T ss_pred HHH
Confidence 654
No 131
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.12 E-value=2.9e-09 Score=92.01 Aligned_cols=165 Identities=21% Similarity=0.293 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHH----------------------------HHHcCChH
Q 024419 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAA----------------------------FLHLVKLN 58 (268)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~----------------------------~~~~~~~~ 58 (268)
.+.|-....+|...|+..+|..+..+-++ .|.++..|+.+|.+ ....++|+
T Consensus 424 lemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs 502 (777)
T KOG1128|consen 424 LEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFS 502 (777)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHH
Confidence 45666777788888888888888888888 45555555544433 34457899
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhH
Q 024419 59 KALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNV 138 (268)
Q Consensus 59 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 138 (268)
++..+++..++++|-....|+.+|.+..+.++++.|.++|.+++.++|++.++|.+++..+...++..+|-..
T Consensus 503 ~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~------- 575 (777)
T KOG1128|consen 503 EADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRK------- 575 (777)
T ss_pred HHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHH-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999998888443
Q ss_pred HHhhhHHHHHHHhhhhcCchhhhHHH--HHHHHHHHHHHHHhhhhhhhchh
Q 024419 139 DMVQHLDEFKSEMSEKYGAEECWKHV--FSFVVETMETAVKSWHETSKVDA 187 (268)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~~~~~~~ 187 (268)
+..++..++.....+... .....+.+++|++.+.+.+.+..
T Consensus 576 --------l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 576 --------LKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred --------HHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence 233344445555555543 34457788888888877665543
No 132
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.11 E-value=2.4e-09 Score=77.83 Aligned_cols=96 Identities=24% Similarity=0.257 Sum_probs=84.0
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (268)
Q Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 82 (268)
...+.+.+|..++..|++++|+..|+.++...|+. ..+.+.+|.++...|++++|+..++. +.-.+-.+.++..+|
T Consensus 47 a~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~G 125 (145)
T PF09976_consen 47 AALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLG 125 (145)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHH
Confidence 36678889999999999999999999999987655 45788999999999999999999966 334445577888999
Q ss_pred HHHHHccCHHHHHHHHHHHH
Q 024419 83 CILEAMEQYDDALSAFQTAL 102 (268)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~~l 102 (268)
.++...|++++|+..|++++
T Consensus 126 di~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 126 DIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHCCCHHHHHHHHHHhC
Confidence 99999999999999999875
No 133
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.11 E-value=1.2e-08 Score=88.30 Aligned_cols=105 Identities=20% Similarity=0.134 Sum_probs=92.3
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024419 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCIL 85 (268)
Q Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 85 (268)
+.+.+.-+..++...|++++|++++......-++...++-.+|.++.++|++++|...|+..|..||+|...|..+..+.
T Consensus 3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 46778888999999999999999999998888889999999999999999999999999999999999999999998888
Q ss_pred HHcc-----CHHHHHHHHHHHHhhCCCCHH
Q 024419 86 EAME-----QYDDALSAFQTALQYNPQSAE 110 (268)
Q Consensus 86 ~~~~-----~~~~A~~~~~~~l~~~p~~~~ 110 (268)
.... +.+.-...|+..-+..|....
T Consensus 83 g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~ 112 (517)
T PF12569_consen 83 GLQLQLSDEDVEKLLELYDELAEKYPRSDA 112 (517)
T ss_pred hhhcccccccHHHHHHHHHHHHHhCccccc
Confidence 4433 466667888888888886543
No 134
>PRK11906 transcriptional regulator; Provisional
Probab=99.10 E-value=3.8e-09 Score=87.93 Aligned_cols=123 Identities=13% Similarity=0.001 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHH---hcCCCChHHHHHHHHHHHHc---------CChHHHHHHHHHHHhhCCC
Q 024419 9 SLKDKGNEFFKAG---NYLKAAALYTQAI---KQDPSNPTLFSNRAAAFLHL---------VKLNKALADAETTISLNPQ 73 (268)
Q Consensus 9 ~~~~~g~~~~~~~---~~~~A~~~~~~al---~~~p~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~al~~~p~ 73 (268)
.++.+|...+..+ ..+.|+.+|.+|+ .++|..+.+|..++.|++.. .+..+|.+..++|++++|.
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 4577888887666 4568999999999 99999999999999999876 2356889999999999999
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHH
Q 024419 74 WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV 131 (268)
Q Consensus 74 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 131 (268)
++.++..+|.+....++++.|+..|++++.++|+.+.+++..|.+....|+.++|.+.
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~ 394 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARIC 394 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998665
No 135
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=99.10 E-value=4.9e-09 Score=87.44 Aligned_cols=115 Identities=17% Similarity=0.118 Sum_probs=106.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHH
Q 024419 14 GNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDD 93 (268)
Q Consensus 14 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 93 (268)
-..+...++++.|++.+++..+.+|+ +...++.++..+++..+|+....++++.+|.+...+...+..+...++++.
T Consensus 176 l~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~l 252 (395)
T PF09295_consen 176 LKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYEL 252 (395)
T ss_pred HHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Confidence 34455678999999999999999875 566789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHH
Q 024419 94 ALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV 131 (268)
Q Consensus 94 A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 131 (268)
|+...+++++..|++...|..|+.+|...|+++.|...
T Consensus 253 AL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALla 290 (395)
T PF09295_consen 253 ALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLA 290 (395)
T ss_pred HHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence 99999999999999999999999999999999999755
No 136
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=99.09 E-value=3.3e-10 Score=93.75 Aligned_cols=119 Identities=30% Similarity=0.517 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024419 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILE 86 (268)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 86 (268)
+..+-..++..+..+.|+.|+..|.+|++++|+++..+-+++.++.+.+++..|+..+.++++.+|....+|++.|.+..
T Consensus 4 a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m 83 (476)
T KOG0376|consen 4 AEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVM 83 (476)
T ss_pred hhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHH
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 024419 87 AMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDK 125 (268)
Q Consensus 87 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~ 125 (268)
..+++.+|...|++...+.|+++.+...+..+.....+.
T Consensus 84 ~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~ 122 (476)
T KOG0376|consen 84 ALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEE 122 (476)
T ss_pred hHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999887766543
No 137
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.08 E-value=6.3e-09 Score=86.34 Aligned_cols=113 Identities=18% Similarity=0.133 Sum_probs=101.3
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 82 (268)
.|+++..+-..+.+++..++..+|++.+++++..+|.....+.++|.++++.|++++|+..++..+..+|+++..|..||
T Consensus 336 ~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LA 415 (484)
T COG4783 336 QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLA 415 (484)
T ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHH
Confidence 68888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 024419 83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKI 115 (268)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l 115 (268)
.+|..+|+..+|...+-....+.-.-..+...+
T Consensus 416 qay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l 448 (484)
T COG4783 416 QAYAELGNRAEALLARAEGYALAGRLEQAIIFL 448 (484)
T ss_pred HHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 999999999998877776665554444443333
No 138
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.07 E-value=3.6e-10 Score=74.04 Aligned_cols=78 Identities=14% Similarity=0.187 Sum_probs=70.1
Q ss_pred cCChHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHH
Q 024419 54 LVKLNKALADAETTISLNPQ--WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV 131 (268)
Q Consensus 54 ~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 131 (268)
.|+++.|+..+++++..+|. +...++.+|.|++..|+|++|+..+++ ...+|.+......+|.++..+|++++|+..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 68999999999999999995 466788899999999999999999999 889999999999999999999999999776
Q ss_pred H
Q 024419 132 E 132 (268)
Q Consensus 132 ~ 132 (268)
.
T Consensus 81 l 81 (84)
T PF12895_consen 81 L 81 (84)
T ss_dssp H
T ss_pred H
Confidence 3
No 139
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.06 E-value=8.6e-10 Score=89.63 Aligned_cols=193 Identities=13% Similarity=0.194 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC------CH
Q 024419 8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQ------DPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ------WE 75 (268)
Q Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~------~~ 75 (268)
-.+.++|+.|+..++|++|+++-..-+.+ .-..+..--++|..+..+|.|++|+.++.+-+.+.-. ..
T Consensus 56 AIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~ 135 (639)
T KOG1130|consen 56 AIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLES 135 (639)
T ss_pred HHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhh
Confidence 46788999999999999999875544332 1223455668999999999999999999887765322 36
Q ss_pred HHHHHHHHHHHHccC--------------------HHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHHHHHhH
Q 024419 76 KGYFRKGCILEAMEQ--------------------YDDALSAFQTALQYNPQS------AEVSRKIKRVSQLAKDKKRAQ 129 (268)
Q Consensus 76 ~~~~~la~~~~~~~~--------------------~~~A~~~~~~~l~~~p~~------~~~~~~l~~~~~~~~~~~~a~ 129 (268)
.+++++|.+|...|+ ++.|.++|..-|++.... ..++-+||..|..+|++++|+
T Consensus 136 RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai 215 (639)
T KOG1130|consen 136 RALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAI 215 (639)
T ss_pred HHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHH
Confidence 789999999988763 344556666555553322 346777888888899999997
Q ss_pred HHHhhhhhHHHhhhHHH--HHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH----------------HHH
Q 024419 130 EVENIRSNVDMVQHLDE--FKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK----------------VYF 191 (268)
Q Consensus 130 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------------~~~ 191 (268)
...+.+-.+ +..+.. -........++. +..++.++.|+++|++.+.+.-. .|.
T Consensus 216 ~~H~~RL~i--a~efGDrAaeRRA~sNlgN~-------hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtyt 286 (639)
T KOG1130|consen 216 HFHKLRLEI--AQEFGDRAAERRAHSNLGNC-------HIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYT 286 (639)
T ss_pred HHHHHHHHH--HHHhhhHHHHHHhhcccchh-------hhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHH
Confidence 764322222 111111 111223333443 55567777788888776544432 355
Q ss_pred HhhhhhhhHhhhhHHhcC
Q 024419 192 LLDKEKTDTEKYAPIVNV 209 (268)
Q Consensus 192 ~~~~~~~a~~~~~~~~~~ 209 (268)
.+.++.+|+.+..+=+.+
T Consensus 287 ll~e~~kAI~Yh~rHLaI 304 (639)
T KOG1130|consen 287 LLKEVQKAITYHQRHLAI 304 (639)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 667777777777666655
No 140
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=99.06 E-value=1.2e-09 Score=90.85 Aligned_cols=68 Identities=18% Similarity=0.170 Sum_probs=42.7
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHH---HHHHHHHHHHcCChHHHHHHHHHHHhh
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTL---FSNRAAAFLHLVKLNKALADAETTISL 70 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~~a~~~~~~~~~~~A~~~~~~al~~ 70 (268)
.|.++.+++++|..++..|+|++|+..|+++++++|++..+ |+++|.||..+|++++|+.++++++++
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45556666666666666666666666666666666666533 666666666666666666666666665
No 141
>PRK15331 chaperone protein SicA; Provisional
Probab=99.05 E-value=4e-09 Score=76.03 Aligned_cols=97 Identities=9% Similarity=-0.024 Sum_probs=91.0
Q ss_pred cCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 024419 36 QDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKI 115 (268)
Q Consensus 36 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l 115 (268)
+.++..+..+..|.-++..|++++|...|+-....+|.+++.++.||.|+..+++|++|+..|..+..++++++.+.+..
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~a 111 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFT 111 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchH
Confidence 45556688889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHH
Q 024419 116 KRVSQLAKDKKRAQEVE 132 (268)
Q Consensus 116 ~~~~~~~~~~~~a~~~~ 132 (268)
|.++..+|+...|....
T Consensus 112 gqC~l~l~~~~~A~~~f 128 (165)
T PRK15331 112 GQCQLLMRKAAKARQCF 128 (165)
T ss_pred HHHHHHhCCHHHHHHHH
Confidence 99999999999997753
No 142
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.04 E-value=5e-07 Score=73.40 Aligned_cols=125 Identities=14% Similarity=0.061 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHH
Q 024419 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ-WEKGYFRKGCIL 85 (268)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~ 85 (268)
+......|..-+..|+|.+|.....++-+-.+...-.+..-+.+--++|+++.|-.+..++-+..++ ...+...++.+.
T Consensus 84 a~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarll 163 (400)
T COG3071 84 ARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLL 163 (400)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 3445567777888999999999999998888888888888899999999999999999999999544 467788999999
Q ss_pred HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHH
Q 024419 86 EAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV 131 (268)
Q Consensus 86 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 131 (268)
...|+++.|.....++++..|.++.+.....++|...|.+.....+
T Consensus 164 l~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~ 209 (400)
T COG3071 164 LNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAI 209 (400)
T ss_pred HhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHH
Confidence 9999999999999999999999999999999999999999887665
No 143
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=99.04 E-value=1.8e-09 Score=89.73 Aligned_cols=69 Identities=26% Similarity=0.350 Sum_probs=66.7
Q ss_pred cCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHH---HHHHHHHHHHccCHHHHHHHHHHHHhh
Q 024419 36 QDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKG---YFRKGCILEAMEQYDDALSAFQTALQY 104 (268)
Q Consensus 36 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~~~~~~A~~~~~~~l~~ 104 (268)
.+|+++.+|+++|.+|..+|+|++|+.+|+++|+++|++..+ |+++|.+|..+|++++|+.++++++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 589999999999999999999999999999999999999865 999999999999999999999999998
No 144
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.03 E-value=1.5e-09 Score=88.28 Aligned_cols=230 Identities=15% Similarity=0.176 Sum_probs=152.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh----HHHHHHHHHHHHcCChHHHHHHHHHHHhh------CCCCHHHH
Q 024419 9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP----TLFSNRAAAFLHLVKLNKALADAETTISL------NPQWEKGY 78 (268)
Q Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~ 78 (268)
.+-..|..+++.|++..-+..|+.|++.-..+. .+|..+|.+|+-+++|.+|+++-..-|.+ .-..+...
T Consensus 19 eLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKss 98 (639)
T KOG1130|consen 19 ELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSS 98 (639)
T ss_pred HHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccc
Confidence 455678899999999999999999999977663 57889999999999999999876555443 22346677
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHHHHHHHhH---HH----HhhhhhHHHhhhHH
Q 024419 79 FRKGCILEAMEQYDDALSAFQTALQYNP------QSAEVSRKIKRVSQLAKDKKRAQ---EV----ENIRSNVDMVQHLD 145 (268)
Q Consensus 79 ~~la~~~~~~~~~~~A~~~~~~~l~~~p------~~~~~~~~l~~~~~~~~~~~~a~---~~----~~~~~~~~~~~~~~ 145 (268)
-+||.++..+|.|++|+.+..+-|.+.. ....+++++|.+|...|.-..-. +. .+..+.+.....+-
T Consensus 99 gNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy 178 (639)
T KOG1130|consen 99 GNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFY 178 (639)
T ss_pred ccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHH
Confidence 8899999999999999999888776543 23568999999998876432211 00 11222222222221
Q ss_pred HHHHHhh------hhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH----------------HHHHhhhhhhhHhhh
Q 024419 146 EFKSEMS------EKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK----------------VYFLLDKEKTDTEKY 203 (268)
Q Consensus 146 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------------~~~~~~~~~~a~~~~ 203 (268)
.....+. ...|..+-..|..++.+++++.|+..-+.-+.+... ++..+|+++.|+++|
T Consensus 179 ~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehY 258 (639)
T KOG1130|consen 179 MENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHY 258 (639)
T ss_pred HHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHH
Confidence 1111111 123334444455566677777777766655544432 577999999999999
Q ss_pred hHHhcCCccc-------cCccchhHHHHHHHHH--HHHHHHHHh
Q 024419 204 APIVNVDKAF-------ESPHTHGSCFQFLRQY--ADDSFSSAA 238 (268)
Q Consensus 204 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~--a~~~~~ka~ 238 (268)
+..+.+.... .+.+.+|..|..+..+ |+.++.+-+
T Consensus 259 K~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHL 302 (639)
T KOG1130|consen 259 KLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHL 302 (639)
T ss_pred HHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 8877652211 1223356666666666 666666655
No 145
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=99.03 E-value=8.8e-09 Score=74.99 Aligned_cols=96 Identities=18% Similarity=0.334 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCC----------hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccC--
Q 024419 23 YLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVK----------LNKALADAETTISLNPQWEKGYFRKGCILEAMEQ-- 90 (268)
Q Consensus 23 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-- 90 (268)
|+.|.+.++.....+|.+++.+.+=|.++..+.+ +++|++-|++||.++|+..++++.+|.+|...+.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 7889999999999999999999999998887754 4678999999999999999999999999998753
Q ss_pred ---------HHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024419 91 ---------YDDALSAFQTALQYNPQSAEVSRKIKRV 118 (268)
Q Consensus 91 ---------~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 118 (268)
|++|.++|+++...+|+|......|...
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 7889999999999999998877766544
No 146
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.02 E-value=1.5e-08 Score=91.92 Aligned_cols=97 Identities=10% Similarity=0.016 Sum_probs=86.5
Q ss_pred HhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH----
Q 024419 34 IKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSA---- 109 (268)
Q Consensus 34 l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~---- 109 (268)
...+|.+..+|..+...+...+++++|+..++.+++.+|+.+..|+.+|.++.+.+++.++... .++...+.+.
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ 101 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAI 101 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhH
Confidence 3458999999999999999999999999999999999999999999999999999988887655 6666666655
Q ss_pred ---------------HHHHHHHHHHHHHHHHHHhHHHH
Q 024419 110 ---------------EVSRKIKRVSQLAKDKKRAQEVE 132 (268)
Q Consensus 110 ---------------~~~~~l~~~~~~~~~~~~a~~~~ 132 (268)
.+++.+|.+|..+|..++|....
T Consensus 102 ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~y 139 (906)
T PRK14720 102 VEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVW 139 (906)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHH
Confidence 89999999999999999997664
No 147
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=99.02 E-value=5.5e-08 Score=66.85 Aligned_cols=102 Identities=23% Similarity=0.288 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC----HHHHHHHH
Q 024419 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW----EKGYFRKG 82 (268)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la 82 (268)
...+-..|-.+...|+.+.|++.|.+++.+.|..+.+|.+++.++.-+|+.++|++.+++++++.-+. -.++.+.|
T Consensus 43 S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg 122 (175)
T KOG4555|consen 43 SRELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRG 122 (175)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 34556678888899999999999999999999999999999999999999999999999999986543 25789999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCC
Q 024419 83 CILEAMEQYDDALSAFQTALQYNPQS 108 (268)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~~l~~~p~~ 108 (268)
.+|...|+-+.|...|+.+-++-...
T Consensus 123 ~lyRl~g~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 123 LLYRLLGNDDAARADFEAAAQLGSKF 148 (175)
T ss_pred HHHHHhCchHHHHHhHHHHHHhCCHH
Confidence 99999999999999999998775543
No 148
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.02 E-value=1.7e-08 Score=91.91 Aligned_cols=123 Identities=14% Similarity=0.026 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Q 024419 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQD-PSNPTLFSNRAAAFLHLVKLNKALADAETTISLN-PQWEKGYFRKGCI 84 (268)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 84 (268)
..+|..+...+.+.|++++|+..|++..... .-+...+..+..++.+.|++++|...+..+++.. +.+..++..+...
T Consensus 290 ~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~ 369 (697)
T PLN03081 290 TVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDL 369 (697)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHH
Confidence 4455555555555666666666665554431 1133455555555555555555555555555543 3344455555666
Q ss_pred HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419 85 LEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE 132 (268)
Q Consensus 85 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 132 (268)
|.+.|++++|...|++..+ .+...|..+...+...|+.++|.++.
T Consensus 370 y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf 414 (697)
T PLN03081 370 YSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMF 414 (697)
T ss_pred HHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHH
Confidence 6666666666666665533 23445666666666666666665553
No 149
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.01 E-value=1.7e-08 Score=90.13 Aligned_cols=177 Identities=14% Similarity=-0.006 Sum_probs=106.9
Q ss_pred CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 024419 21 GNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQT 100 (268)
Q Consensus 21 ~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 100 (268)
++-+.|...+-+++.++|+-+.++..+|..|+...+...|..+|.+|.++||.++.+.-..+..|....+++.|....-.
T Consensus 472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 34566666666666666666666666666666666666666666666666666666666666666666666666555444
Q ss_pred HHhhCCCC--HHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCch--hhhHHHHHHHHHHHHHHH
Q 024419 101 ALQYNPQS--AEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAE--ECWKHVFSFVVETMETAV 176 (268)
Q Consensus 101 ~l~~~p~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~A~ 176 (268)
+-+..|-. ...|..+|-.+...++..++.. .+...+..+..+. +...|..+...|++..|+
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~---------------~fQsALR~dPkD~n~W~gLGeAY~~sGry~~Al 616 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVC---------------EFQSALRTDPKDYNLWLGLGEAYPESGRYSHAL 616 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHH---------------HHHHHhcCCchhHHHHHHHHHHHHhcCceehHH
Confidence 44444432 2334444444444444444422 2233333333333 334445666788899999
Q ss_pred HhhhhhhhchhH----------HHHHhhhhhhhHhhhhHHhcCCcc
Q 024419 177 KSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKA 212 (268)
Q Consensus 177 ~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~~~ 212 (268)
+.|.++..++|. .-...|++..++..+...+.....
T Consensus 617 KvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~ 662 (1238)
T KOG1127|consen 617 KVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSL 662 (1238)
T ss_pred HhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 999999888887 233668888888888777765433
No 150
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=7.4e-09 Score=84.29 Aligned_cols=100 Identities=15% Similarity=0.207 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024419 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILE 86 (268)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 86 (268)
.-.+.+++.++.+.++|..|+...+++|..+|+|.-+++.+|.++..+|+|+.|+..|+++++++|.|-.+...+..+..
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HccCHHHH-HHHHHHHHhhCC
Q 024419 87 AMEQYDDA-LSAFQTALQYNP 106 (268)
Q Consensus 87 ~~~~~~~A-~~~~~~~l~~~p 106 (268)
+..++.+. .+.|.+.+..-+
T Consensus 337 k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHHHHHHHHhhccc
Confidence 88877765 788888887654
No 151
>PRK11906 transcriptional regulator; Provisional
Probab=98.98 E-value=2.1e-08 Score=83.58 Aligned_cols=108 Identities=9% Similarity=-0.027 Sum_probs=98.3
Q ss_pred hHhHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 024419 4 EAEEMSLKDKGNEFFKA---------GNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW 74 (268)
Q Consensus 4 ~~~~~~~~~~g~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 74 (268)
|..+.++..++.+++.. .+..+|.+..++|++++|.++.++..+|.+....++++.|+..|++|+.++|+.
T Consensus 292 p~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~ 371 (458)
T PRK11906 292 TLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDI 371 (458)
T ss_pred cccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCcc
Confidence 55577888888877644 356789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH
Q 024419 75 EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111 (268)
Q Consensus 75 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 111 (268)
+.+|+..|.+....|+.++|++.++++++++|....+
T Consensus 372 A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 372 ASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 9999999999999999999999999999999976544
No 152
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.94 E-value=2.4e-08 Score=69.32 Aligned_cols=90 Identities=18% Similarity=0.139 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC---CHHHHHHH
Q 024419 42 TLFSNRAAAFLHLVKLNKALADAETTISLNPQW---EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQ---SAEVSRKI 115 (268)
Q Consensus 42 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~l 115 (268)
.+++++|.++-.+|+.++|+..|++++...+.. ..+++.+|.++..+|++++|+..+++++...|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 578999999999999999999999999975543 678999999999999999999999999999898 77788888
Q ss_pred HHHHHHHHHHHHhHHH
Q 024419 116 KRVSQLAKDKKRAQEV 131 (268)
Q Consensus 116 ~~~~~~~~~~~~a~~~ 131 (268)
+.++...|+.++|...
T Consensus 82 Al~L~~~gr~~eAl~~ 97 (120)
T PF12688_consen 82 ALALYNLGRPKEALEW 97 (120)
T ss_pred HHHHHHCCCHHHHHHH
Confidence 8888899999999665
No 153
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.93 E-value=3.7e-09 Score=68.15 Aligned_cols=67 Identities=13% Similarity=0.258 Sum_probs=38.3
Q ss_pred hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---C----CChHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 024419 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQD---P----SNPTLFSNRAAAFLHLVKLNKALADAETTISL 70 (268)
Q Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p----~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 70 (268)
|.-+.++..+|.++...|+|++|+++|++++++. + ..+.++.++|.|+..+|++++|+..+++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4455666666666666666666666666666541 1 11345556666666666666666666666553
No 154
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.91 E-value=1.7e-09 Score=69.78 Aligned_cols=67 Identities=22% Similarity=0.368 Sum_probs=57.8
Q ss_pred CCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh----C---CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 024419 38 PSNPTLFSNRAAAFLHLVKLNKALADAETTISL----N---PQWEKGYFRKGCILEAMEQYDDALSAFQTALQY 104 (268)
Q Consensus 38 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~---p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 104 (268)
|+-+.++.++|.+|..+|++++|+.+|++++++ . |..+.++.++|.++...|++++|++.+++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 445678999999999999999999999999976 1 223678999999999999999999999999876
No 155
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=3.9e-07 Score=77.46 Aligned_cols=202 Identities=15% Similarity=0.109 Sum_probs=138.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024419 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILE 86 (268)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 86 (268)
...++.--+.+..+|+|++|.....+.+...|++..+..-.-.|..+.++|++|+...++-......+. ..+..+.|++
T Consensus 12 ~~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~-~~fEKAYc~Y 90 (652)
T KOG2376|consen 12 LEALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINS-FFFEKAYCEY 90 (652)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcch-hhHHHHHHHH
Confidence 356777778888999999999999999999999999999999999999999999854444332222222 2278999999
Q ss_pred HccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhh--hhHHH---h--hhHHHHHHHhh-------
Q 024419 87 AMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIR--SNVDM---V--QHLDEFKSEMS------- 152 (268)
Q Consensus 87 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~---~--~~~~~~~~~~~------- 152 (268)
++++.++|+.+++ ..++.+......-+++...++.+++|..++... ...+. . ..+......+.
T Consensus 91 rlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v 167 (652)
T KOG2376|consen 91 RLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSV 167 (652)
T ss_pred HcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhc
Confidence 9999999999998 567777778888899999999999998764321 11110 0 00000000000
Q ss_pred ----hhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH-------------------------HHHHhhhhhhhHhhh
Q 024419 153 ----EKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK-------------------------VYFLLDKEKTDTEKY 203 (268)
Q Consensus 153 ----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-------------------------~~~~~~~~~~a~~~~ 203 (268)
.+.-...+.........+.|.+|++.++++..+..+ ++..+|+..+|...|
T Consensus 168 ~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy 247 (652)
T KOG2376|consen 168 PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIY 247 (652)
T ss_pred cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 001111233444555678888888888887433321 456778888888888
Q ss_pred hHHhcCCcc
Q 024419 204 APIVNVDKA 212 (268)
Q Consensus 204 ~~~~~~~~~ 212 (268)
...+..++.
T Consensus 248 ~~~i~~~~~ 256 (652)
T KOG2376|consen 248 VDIIKRNPA 256 (652)
T ss_pred HHHHHhcCC
Confidence 877776553
No 156
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.90 E-value=4.5e-08 Score=77.76 Aligned_cols=92 Identities=20% Similarity=0.181 Sum_probs=82.9
Q ss_pred hHHHHHHHHHH-HHcCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHH
Q 024419 41 PTLFSNRAAAF-LHLVKLNKALADAETTISLNPQW---EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS---AEVSR 113 (268)
Q Consensus 41 ~~~~~~~a~~~-~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~ 113 (268)
...++..|..+ +..|+|++|+..|++.++..|+. +.+++.+|.+|+..|++++|+..|+++++..|++ ++++.
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 46788888876 56799999999999999999998 5899999999999999999999999999998875 78899
Q ss_pred HHHHHHHHHHHHHHhHHHH
Q 024419 114 KIKRVSQLAKDKKRAQEVE 132 (268)
Q Consensus 114 ~l~~~~~~~~~~~~a~~~~ 132 (268)
.+|.++...|+.++|....
T Consensus 222 klg~~~~~~g~~~~A~~~~ 240 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVY 240 (263)
T ss_pred HHHHHHHHcCCHHHHHHHH
Confidence 9999999999999997663
No 157
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.90 E-value=3.6e-07 Score=85.78 Aligned_cols=126 Identities=15% Similarity=0.060 Sum_probs=80.7
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHcCChHHHHHHHHHHHhh----CCCCHHHHHH
Q 024419 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDP-SNPTLFSNRAAAFLHLVKLNKALADAETTISL----NPQWEKGYFR 80 (268)
Q Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~ 80 (268)
+...+..+...+.+.|++++|++.|.+.....- -+...|..+..+|.+.|++++|.+.+.+.... .|+ ...|..
T Consensus 506 dvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTyna 584 (1060)
T PLN03218 506 NVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGA 584 (1060)
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHH
Confidence 345566666666677777777777766654321 13556666667777777777777777766542 333 345666
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419 81 KGCILEAMEQYDDALSAFQTALQYN-PQSAEVSRKIKRVSQLAKDKKRAQEVE 132 (268)
Q Consensus 81 la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~ 132 (268)
+..+|.+.|++++|.+.|+...+.+ +.+...|..+...+...|++++|..+.
T Consensus 585 LI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf 637 (1060)
T PLN03218 585 LMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIY 637 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Confidence 6666777777777777777776665 445666667777777777777776653
No 158
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=2.3e-08 Score=79.19 Aligned_cols=107 Identities=31% Similarity=0.501 Sum_probs=96.3
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q 024419 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPS----NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFR 80 (268)
Q Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 80 (268)
..+..+...|+-+++.++|..|+..|.+.|+..-. ++..|.|+|.|.+..|+|..|+..+.+++.++|.+..++++
T Consensus 79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R 158 (390)
T KOG0551|consen 79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIR 158 (390)
T ss_pred HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhh
Confidence 34778899999999999999999999999998543 35789999999999999999999999999999999999999
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCCHHH
Q 024419 81 KGCILEAMEQYDDALSAFQTALQYNPQSAEV 111 (268)
Q Consensus 81 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 111 (268)
=|.|+..+.++.+|...++..+.++-+...+
T Consensus 159 ~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~ 189 (390)
T KOG0551|consen 159 GAKCLLELERFAEAVNWCEEGLQIDDEAKKA 189 (390)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 9999999999999999999988876655443
No 159
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.89 E-value=2.6e-08 Score=83.12 Aligned_cols=106 Identities=16% Similarity=0.212 Sum_probs=94.8
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024419 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCIL 85 (268)
Q Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 85 (268)
++++...++.++...++-.+|+..+.++++..|.+...+..-+..+...++++.|+...++++...|+....|+.|+.+|
T Consensus 199 ~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Y 278 (395)
T PF09295_consen 199 DPEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECY 278 (395)
T ss_pred CCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 35567778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCHHHHHHHHHHHHhhCCCCHHH
Q 024419 86 EAMEQYDDALSAFQTALQYNPQSAEV 111 (268)
Q Consensus 86 ~~~~~~~~A~~~~~~~l~~~p~~~~~ 111 (268)
...|+++.|+..+..+--..+.+...
T Consensus 279 i~~~d~e~ALlaLNs~Pm~~~~~k~~ 304 (395)
T PF09295_consen 279 IQLGDFENALLALNSCPMLTYKDKYK 304 (395)
T ss_pred HhcCCHHHHHHHHhcCcCCCCccchh
Confidence 99999999998887665443333333
No 160
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.88 E-value=1e-07 Score=77.22 Aligned_cols=124 Identities=21% Similarity=0.172 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--C----ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhC--CC----C
Q 024419 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDP--S----NPTLFSNRAAAFLHLVKLNKALADAETTISLN--PQ----W 74 (268)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--~----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~----~ 74 (268)
++.+..-|+.+...|+|++|.+.|.++....- + -+..+...+.++.+. ++++|+.+|++++.+- .. -
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~a 113 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQA 113 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHH
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 45566778888888999999999999976532 1 245677778887666 9999999999999862 12 2
Q ss_pred HHHHHHHHHHHHHc-cCHHHHHHHHHHHHhhCCC--C----HHHHHHHHHHHHHHHHHHHhHHH
Q 024419 75 EKGYFRKGCILEAM-EQYDDALSAFQTALQYNPQ--S----AEVSRKIKRVSQLAKDKKRAQEV 131 (268)
Q Consensus 75 ~~~~~~la~~~~~~-~~~~~A~~~~~~~l~~~p~--~----~~~~~~l~~~~~~~~~~~~a~~~ 131 (268)
..++..+|.+|... |++++|++.|++++++... . ...+..++.++...+++++|.++
T Consensus 114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~ 177 (282)
T PF14938_consen 114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEI 177 (282)
T ss_dssp HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 56788999999998 9999999999999987322 1 34667788888888888888665
No 161
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.87 E-value=4.9e-07 Score=84.88 Aligned_cols=124 Identities=15% Similarity=0.081 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-CCCHHHHHHH
Q 024419 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQ----DPSNPTLFSNRAAAFLHLVKLNKALADAETTISLN-PQWEKGYFRK 81 (268)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 81 (268)
...+..+...+.+.|++++|.+.+.+.... .| +...|..+..+|.+.|++++|.+.|+++.+.+ +.+...|..+
T Consensus 542 ~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsL 620 (1060)
T PLN03218 542 RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIA 620 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHH
Confidence 457778888888999999999999988753 44 45678888888999999999999999988876 4567788888
Q ss_pred HHHHHHccCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419 82 GCILEAMEQYDDALSAFQTALQY--NPQSAEVSRKIKRVSQLAKDKKRAQEVE 132 (268)
Q Consensus 82 a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 132 (268)
...|.+.|++++|+..|++..+. .|+ ...+..+...+...|+.++|.++.
T Consensus 621 I~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~ 672 (1060)
T PLN03218 621 VNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGDLDKAFEIL 672 (1060)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHH
Confidence 88999999999999999988875 454 567777778888888888887664
No 162
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.87 E-value=8.1e-09 Score=82.26 Aligned_cols=207 Identities=6% Similarity=-0.053 Sum_probs=128.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 024419 44 FSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAK 123 (268)
Q Consensus 44 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~ 123 (268)
+-..|.-|+++|+|++||.||.+++..+|.|+..+.++|.+|.+.+.|..|...+..++.++.....+|.+.+.....+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHHHHH-HHHHHHHHhhhhhh-hchhH-HHHHhhhhhhhH
Q 024419 124 DKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVV-ETMETAVKSWHETS-KVDAK-VYFLLDKEKTDT 200 (268)
Q Consensus 124 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~~-~~~~~-~~~~~~~~~~a~ 200 (268)
...+|.+-.+ ..+..-+....+.. ........ ....++.... | +..|...--..+ ...+. .+...|.++.++
T Consensus 180 ~~~EAKkD~E--~vL~LEP~~~ELkK-~~a~i~Sl-~E~~I~~KsT~G-~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i 254 (536)
T KOG4648|consen 180 NNMEAKKDCE--TVLALEPKNIELKK-SLARINSL-RERKIATKSTPG-FTPARQGMIQILPIKKPGYKFSKKAMRSVPV 254 (536)
T ss_pred hHHHHHHhHH--HHHhhCcccHHHHH-HHHHhcch-HhhhHHhhcCCC-CCccccchhhhccccCcchhhhhhhccccce
Confidence 8888754321 11111111111110 00001111 0000100000 1 001111111112 11122 355667888888
Q ss_pred hhhhHHhcCCccccCccchhHHHHHHHHH--HHHHHHHHhhhhCCCCccccccccccccccc
Q 024419 201 EKYAPIVNVDKAFESPHTHGSCFQFLRQY--ADDSFSSAACLVAPKSIISYPQVYKPICLER 260 (268)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--a~~~~~ka~~~~~p~~~~~~~~~~~~~~~~~ 260 (268)
.+|.+-+.-..+...-+.....++.+..| ++....+++ ..+|. |+.-+.|.|-++
T Consensus 255 ~~~~~~~A~~~~~~~L~~~~~~~~KI~~~~~~~~~~~~~~-~~~~s----~~~~~s~~~~A~ 311 (536)
T KOG4648|consen 255 VDVVSPRATIDDSNQLRISDEDIDKIFNSNCGIIEEVKKT-NPKPT----PMPDTSGPPKAE 311 (536)
T ss_pred eEeeccccccCccccCcccHHHHHHHhhcchhHHHHHHhc-CCCCC----cCcccCCCchhH
Confidence 77765555432222122235556666666 888888888 77776 344455665554
No 163
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.87 E-value=5.1e-08 Score=84.79 Aligned_cols=106 Identities=15% Similarity=0.071 Sum_probs=90.5
Q ss_pred hHhHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 024419 4 EAEEMSLKDKGNEFFKA--------GNYLKAAALYTQAIKQ--DPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ 73 (268)
Q Consensus 4 ~~~~~~~~~~g~~~~~~--------~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 73 (268)
|+.+.++-.++.++... ++...+.+...+++.. +|.++.++.-+|..+...|++++|...+++++.++|
T Consensus 373 P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p- 451 (517)
T PRK10153 373 PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM- 451 (517)
T ss_pred CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-
Confidence 66677777766666443 2345667777776664 788889999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH
Q 024419 74 WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110 (268)
Q Consensus 74 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 110 (268)
+..+|..+|.++...|++++|++.|++++.++|.++.
T Consensus 452 s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 452 SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 5889999999999999999999999999999999885
No 164
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.86 E-value=4.8e-06 Score=69.45 Aligned_cols=125 Identities=14% Similarity=0.146 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024419 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILE 86 (268)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 86 (268)
...|...|.--..++++..|...|++||..+..+..+|...+.+-++......|...+.+|+.+-|.--..|+.....-.
T Consensus 73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE 152 (677)
T KOG1915|consen 73 MQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEE 152 (677)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 44566777777889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419 87 AMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE 132 (268)
Q Consensus 87 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 132 (268)
.+|+..-|.+.|++-++..|+ ..+|...-......+..+.|..+.
T Consensus 153 ~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IY 197 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIY 197 (677)
T ss_pred HhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHH
Confidence 999999999999999999996 455655556666666777776654
No 165
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.85 E-value=3.7e-07 Score=73.35 Aligned_cols=177 Identities=15% Similarity=0.178 Sum_probs=124.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHH
Q 024419 15 NEFFKAGNYLKAAALYTQAIKQDPSNP-TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDD 93 (268)
Q Consensus 15 ~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 93 (268)
..+....+|+.|+..++-.+..+.... ..-..+|.|++.+|+|++|+..|.-+...+..+.+.+.++|.|++.+|.|.+
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHH
Confidence 346778899999999999988766544 6778899999999999999999999998777788999999999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHHHHHHHHH
Q 024419 94 ALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETME 173 (268)
Q Consensus 94 A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (268)
|.....+ .|+++-..+.+-.+....++.++-..+. ..+.... .-.....-++++.--|.
T Consensus 110 A~~~~~k----a~k~pL~~RLlfhlahklndEk~~~~fh----------------~~LqD~~-EdqLSLAsvhYmR~HYQ 168 (557)
T KOG3785|consen 110 AKSIAEK----APKTPLCIRLLFHLAHKLNDEKRILTFH----------------SSLQDTL-EDQLSLASVHYMRMHYQ 168 (557)
T ss_pred HHHHHhh----CCCChHHHHHHHHHHHHhCcHHHHHHHH----------------HHHhhhH-HHHHhHHHHHHHHHHHH
Confidence 9766554 5777777666666666666655543331 1111001 11122333466778889
Q ss_pred HHHHhhhhhhhchhH----------HHHHhhhhhhhHhhhhHHhcCCcc
Q 024419 174 TAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKA 212 (268)
Q Consensus 174 ~A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~~~ 212 (268)
+|+..|.+.+.-+|. +|+.+.=++-+-+...-.+.-.|+
T Consensus 169 eAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pd 217 (557)
T KOG3785|consen 169 EAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPD 217 (557)
T ss_pred HHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCC
Confidence 999999998887876 244444444444444444444443
No 166
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.83 E-value=3e-07 Score=74.29 Aligned_cols=120 Identities=13% Similarity=-0.047 Sum_probs=92.4
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcC--ChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024419 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLV--KLNKALADAETTISLNPQWEKGYFRKGC 83 (268)
Q Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~la~ 83 (268)
+.+.......++...++++.|.+.++.+.+.++++.-+...-|++....| ++.+|.-.|+......|..+..+..+|.
T Consensus 130 ~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~ 209 (290)
T PF04733_consen 130 SLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAV 209 (290)
T ss_dssp CHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHH
T ss_pred cccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 45666667778888889999998888888888777666666666666655 5888888888887777788888888889
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 024419 84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDK 125 (268)
Q Consensus 84 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~ 125 (268)
++..+|+|++|.+.+++++..+|++++.+.++..+....|..
T Consensus 210 ~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 210 CHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp HHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred HHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence 999999999999999999988998888888888887777766
No 167
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.82 E-value=2.7e-07 Score=70.90 Aligned_cols=125 Identities=19% Similarity=0.229 Sum_probs=99.3
Q ss_pred hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh---HHHHHHHHHHHHcC-----------ChHHHHHHHHHHHh
Q 024419 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP---TLFSNRAAAFLHLV-----------KLNKALADAETTIS 69 (268)
Q Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~a~~~~~~~-----------~~~~A~~~~~~al~ 69 (268)
|--..+.+.+|.+++..|+|++|+..+++.+...|++. .+++.+|.+++.+. ...+|+..|+..+.
T Consensus 39 ~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~ 118 (203)
T PF13525_consen 39 PYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIK 118 (203)
T ss_dssp TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHH
Confidence 44567899999999999999999999999999999875 68999999987653 24589999999999
Q ss_pred hCCCCHHH-----------------HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHHHHHHHh
Q 024419 70 LNPQWEKG-----------------YFRKGCILEAMEQYDDALSAFQTALQYNPQSA---EVSRKIKRVSQLAKDKKRA 128 (268)
Q Consensus 70 ~~p~~~~~-----------------~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~~~~~~a 128 (268)
..|+...+ -+..|..|.+.|.|..|+.-++.+++..|+.+ +++..+...+..+|..+.+
T Consensus 119 ~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 119 RYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp H-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 99986321 24578889999999999999999999999985 4677777888877777644
No 168
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.80 E-value=5.2e-08 Score=76.39 Aligned_cols=179 Identities=13% Similarity=0.162 Sum_probs=129.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHH
Q 024419 15 NEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDA 94 (268)
Q Consensus 15 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A 94 (268)
..+....+|.+||+++..-.+..|.+...+..+|.||+...+|..|.++|++.-.+.|......+..+..+++.+.+.+|
T Consensus 18 y~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADA 97 (459)
T KOG4340|consen 18 YRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADA 97 (459)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHH
Confidence 44578889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhh-hhcCchhhhHHHHHHHHHHHH
Q 024419 95 LSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMS-EKYGAEECWKHVFSFVVETME 173 (268)
Q Consensus 95 ~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 173 (268)
+.+...... ++..+...-++ +.|+.... .++ +....+...+. ..-.......+.+.+..+.++
T Consensus 98 LrV~~~~~D----~~~L~~~~lqL-------qaAIkYse--~Dl---~g~rsLveQlp~en~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 98 LRVAFLLLD----NPALHSRVLQL-------QAAIKYSE--GDL---PGSRSLVEQLPSENEADGQINLGCLLYKEGQYE 161 (459)
T ss_pred HHHHHHhcC----CHHHHHHHHHH-------HHHHhccc--ccC---cchHHHHHhccCCCccchhccchheeeccccHH
Confidence 877766542 33333333222 22222210 001 11111111121 233344555666677788999
Q ss_pred HHHHhhhhhhhchhH----------HHHHhhhhhhhHhhhhHHhcC
Q 024419 174 TAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNV 209 (268)
Q Consensus 174 ~A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~ 209 (268)
.|++.|..+++...- +++..+++..|++.-...++.
T Consensus 162 aAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred HHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 999999888766532 466788888888887777664
No 169
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.79 E-value=1.4e-06 Score=70.13 Aligned_cols=125 Identities=20% Similarity=0.178 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHH--------------HhhCC
Q 024419 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETT--------------ISLNP 72 (268)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a--------------l~~~p 72 (268)
...-..+|.+++..|+|++|+..|.-+.+.+.-++..+.++|.|++-+|.|.+|...-.++ .+++.
T Consensus 57 ~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklnd 136 (557)
T KOG3785|consen 57 DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLND 136 (557)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCc
Confidence 3456778999999999999999999999988888899999999999999998887655444 22221
Q ss_pred C------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHH
Q 024419 73 Q------------WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV 131 (268)
Q Consensus 73 ~------------~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 131 (268)
. ..+-...+|.+++..-.|++|++.|++++.-+|+.......++.++.++.-++-+.++
T Consensus 137 Ek~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqev 207 (557)
T KOG3785|consen 137 EKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEV 207 (557)
T ss_pred HHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHH
Confidence 1 1223355677777777888888888888888888777777777777776666555443
No 170
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.78 E-value=8.8e-07 Score=69.87 Aligned_cols=127 Identities=13% Similarity=0.150 Sum_probs=104.8
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh---HHHHHHHHHHHHcC---------------C---hHHHHHH
Q 024419 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP---TLFSNRAAAFLHLV---------------K---LNKALAD 63 (268)
Q Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~a~~~~~~~---------------~---~~~A~~~ 63 (268)
.-..+.+.+|.+++..++|++|+..+++.++.+|+++ .+++.+|.++...+ + ..+|+..
T Consensus 67 ~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~ 146 (243)
T PRK10866 67 YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRD 146 (243)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHH
Confidence 3345678999999999999999999999999999874 67899999875554 1 2578899
Q ss_pred HHHHHhhCCCCH---HH--------------HHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHHH
Q 024419 64 AETTISLNPQWE---KG--------------YFRKGCILEAMEQYDDALSAFQTALQYNPQS---AEVSRKIKRVSQLAK 123 (268)
Q Consensus 64 ~~~al~~~p~~~---~~--------------~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~~ 123 (268)
|++.++..|+.. ++ -+..|..|.+.|.|..|+.-++.+++..|+. ++++..+...+..+|
T Consensus 147 ~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg 226 (243)
T PRK10866 147 FSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQ 226 (243)
T ss_pred HHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcC
Confidence 999999999853 22 2446778999999999999999999999876 567888888888888
Q ss_pred HHHHhHHH
Q 024419 124 DKKRAQEV 131 (268)
Q Consensus 124 ~~~~a~~~ 131 (268)
..++|...
T Consensus 227 ~~~~a~~~ 234 (243)
T PRK10866 227 LNAQADKV 234 (243)
T ss_pred ChHHHHHH
Confidence 88888654
No 171
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.78 E-value=1.2e-07 Score=82.10 Aligned_cols=91 Identities=19% Similarity=0.149 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 024419 42 TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL 121 (268)
Q Consensus 42 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 121 (268)
.+++.+|.+|...|++++|++..+++|...|..++.|+..|.++...|++.+|.+.++.+-.+|+.+-.+....+.....
T Consensus 195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHH
Q 024419 122 AKDKKRAQEVE 132 (268)
Q Consensus 122 ~~~~~~a~~~~ 132 (268)
.|+.++|.+..
T Consensus 275 a~~~e~A~~~~ 285 (517)
T PF12569_consen 275 AGRIEEAEKTA 285 (517)
T ss_pred CCCHHHHHHHH
Confidence 99999998764
No 172
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.77 E-value=3.6e-06 Score=65.13 Aligned_cols=106 Identities=23% Similarity=0.232 Sum_probs=89.4
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH---HHHH
Q 024419 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWE---KGYF 79 (268)
Q Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~ 79 (268)
-+..++..|...++.|+|++|+..|+.+....|.+ ..+...++.++++.+++++|+...++-+.+.|.++ .+++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 36688999999999999999999999999998876 47888999999999999999999999999998764 5677
Q ss_pred HHHHHHHHcc--------CHHHHHHHHHHHHhhCCCCHHH
Q 024419 80 RKGCILEAME--------QYDDALSAFQTALQYNPQSAEV 111 (268)
Q Consensus 80 ~la~~~~~~~--------~~~~A~~~~~~~l~~~p~~~~~ 111 (268)
..|.+++..- -...|+..|+..+...|+..-+
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya 152 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYA 152 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcch
Confidence 7888876542 2356788899999999987543
No 173
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=5.8e-07 Score=76.46 Aligned_cols=182 Identities=16% Similarity=0.122 Sum_probs=122.0
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 82 (268)
.|++..++...--++.+.++|++|+...+.-.... .+....+..+.|.+++++.++|+.+++ ..++.........|
T Consensus 42 ~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~-~~~~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~A 117 (652)
T KOG2376|consen 42 VPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL-VINSFFFEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRA 117 (652)
T ss_pred CCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh-hcchhhHHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHH
Confidence 47788888889999999999999995443322211 122333789999999999999999998 55666777888889
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCC-------------------------------HHHHHHHHHHHHHHHHHHHhHHH
Q 024419 83 CILEAMEQYDDALSAFQTALQYNPQS-------------------------------AEVSRKIKRVSQLAKDKKRAQEV 131 (268)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~~l~~~p~~-------------------------------~~~~~~l~~~~~~~~~~~~a~~~ 131 (268)
.+++++|+|++|...|+..++.+.++ .+.+++.+-++...|++.+|+++
T Consensus 118 QvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~el 197 (652)
T KOG2376|consen 118 QVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIEL 197 (652)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHH
Confidence 99999999999999999986554433 23455666666667788888776
Q ss_pred Hhhhh--hHHHhhhHHHHHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH
Q 024419 132 ENIRS--NVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK 188 (268)
Q Consensus 132 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 188 (268)
..... ..+....-.....++......+......+...+|+..+|.+.|...+..+|.
T Consensus 198 L~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~ 256 (652)
T KOG2376|consen 198 LEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPA 256 (652)
T ss_pred HHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCC
Confidence 43110 0000000000111222233334444555667789999999999988877764
No 174
>PLN03077 Protein ECB2; Provisional
Probab=98.72 E-value=1.1e-06 Score=82.11 Aligned_cols=222 Identities=9% Similarity=-0.050 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh-CCCCHHHHH--------
Q 024419 9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL-NPQWEKGYF-------- 79 (268)
Q Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~-------- 79 (268)
.+..+...|.+.|++++|.+.|++..+ .+...|..+...|.+.|++++|+..|++.+.. .|+......
T Consensus 426 ~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~ 502 (857)
T PLN03077 426 VANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARI 502 (857)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhh
Confidence 445556667777777777777766432 34556777777777777777777777777643 333221111
Q ss_pred --------------------------HHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHh
Q 024419 80 --------------------------RKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVEN 133 (268)
Q Consensus 80 --------------------------~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 133 (268)
.+-..|.+.|+.++|...|+.. +.+...|..+...+...|+.++|.++..
T Consensus 503 g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~ 578 (857)
T PLN03077 503 GALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFN 578 (857)
T ss_pred chHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHH
Confidence 1224556666777776666664 4456667777777777777777766532
Q ss_pred hhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhh---hchhH---------HHHHhhhhhhhHh
Q 024419 134 IRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETS---KVDAK---------VYFLLDKEKTDTE 201 (268)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~---~~~~~---------~~~~~~~~~~a~~ 201 (268)
........+....+..-+ ......+..++|...|+... .+.|+ .+...|+.++|.+
T Consensus 579 ~M~~~g~~Pd~~T~~~ll------------~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~ 646 (857)
T PLN03077 579 RMVESGVNPDEVTFISLL------------CACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYN 646 (857)
T ss_pred HHHHcCCCCCcccHHHHH------------HHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHH
Confidence 111111111111111000 01112366677777776654 23443 3445677888877
Q ss_pred hhhHHhcCCccccCccchhHHHHHHHHH--HHHHHHHHhhhhCCCCcccccc
Q 024419 202 KYAPIVNVDKAFESPHTHGSCFQFLRQY--ADDSFSSAACLVAPKSIISYPQ 251 (268)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--a~~~~~ka~~~~~p~~~~~~~~ 251 (268)
.++.. .+.|+......+-..+...+.. +....++.+ +++|++...|..
T Consensus 647 ~~~~m-~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~-~l~p~~~~~y~l 696 (857)
T PLN03077 647 FINKM-PITPDPAVWGALLNACRIHRHVELGELAAQHIF-ELDPNSVGYYIL 696 (857)
T ss_pred HHHHC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH-hhCCCCcchHHH
Confidence 77654 2344321111111111222222 667777888 888887766543
No 175
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.69 E-value=1.4e-06 Score=79.54 Aligned_cols=236 Identities=8% Similarity=-0.028 Sum_probs=152.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHH
Q 024419 8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL--NPQWEKGYFRKGCIL 85 (268)
Q Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~ 85 (268)
..+..+...|.+.|++++|...|++. .+.+..+|..+...|.+.|++++|++.|++.... .| +...+..+..++
T Consensus 260 ~~~n~Li~~y~k~g~~~~A~~vf~~m---~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p-d~~t~~~ll~a~ 335 (697)
T PLN03081 260 FVSCALIDMYSKCGDIEDARCVFDGM---PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI-DQFTFSIMIRIF 335 (697)
T ss_pred eeHHHHHHHHHHCCCHHHHHHHHHhC---CCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Confidence 34566778899999999999999875 4567889999999999999999999999998764 34 456788889999
Q ss_pred HHccCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHH
Q 024419 86 EAMEQYDDALSAFQTALQYN-PQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHV 164 (268)
Q Consensus 86 ~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (268)
...|++++|.+.+..+++.. +.+..++..+...|...|+.++|..+.......+...- ......+...+....+...
T Consensus 336 ~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~--n~lI~~y~~~G~~~~A~~l 413 (697)
T PLN03081 336 SRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISW--NALIAGYGNHGRGTKAVEM 413 (697)
T ss_pred HhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeH--HHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999876 66778888899999999999999887542211110000 0000011112222222221
Q ss_pred HHH---------------------HHHHHHHHHHhhhhhhh---chhH---------HHHHhhhhhhhHhhhhHHhcCCc
Q 024419 165 FSF---------------------VVETMETAVKSWHETSK---VDAK---------VYFLLDKEKTDTEKYAPIVNVDK 211 (268)
Q Consensus 165 ~~~---------------------~~~~~~~A~~~~~~~~~---~~~~---------~~~~~~~~~~a~~~~~~~~~~~~ 211 (268)
+.. ..+..++|.+.|+...+ +.|+ .+...|+.++|.+.++..- ..|
T Consensus 414 f~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~-~~p 492 (697)
T PLN03081 414 FERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP-FKP 492 (697)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC-CCC
Confidence 111 13456666666665532 2343 3445567777766655431 223
Q ss_pred cccCccchhHHHHHHHHH--HHHHHHHHhhhhCCCCcccccc
Q 024419 212 AFESPHTHGSCFQFLRQY--ADDSFSSAACLVAPKSIISYPQ 251 (268)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~--a~~~~~ka~~~~~p~~~~~~~~ 251 (268)
...........+...+++ +...+++.+ .++|++...|..
T Consensus 493 ~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~-~~~p~~~~~y~~ 533 (697)
T PLN03081 493 TVNMWAALLTACRIHKNLELGRLAAEKLY-GMGPEKLNNYVV 533 (697)
T ss_pred CHHHHHHHHHHHHHcCCcHHHHHHHHHHh-CCCCCCCcchHH
Confidence 221111122222233333 888899999 999998766643
No 176
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.69 E-value=8.4e-07 Score=71.84 Aligned_cols=124 Identities=14% Similarity=0.144 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CC----hHHHHHHHHHHHHc-CChHHHHHHHHHHHhhCC--CC---
Q 024419 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDP--SN----PTLFSNRAAAFLHL-VKLNKALADAETTISLNP--QW--- 74 (268)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--~~----~~~~~~~a~~~~~~-~~~~~A~~~~~~al~~~p--~~--- 74 (268)
+..+...|.++ ...++++|+++|++|+.+.- ++ +.++..+|.+|... |++++|++.|++|+.+-. +.
T Consensus 75 a~~~~~Aa~~~-k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~ 153 (282)
T PF14938_consen 75 AKAYEEAANCY-KKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHS 153 (282)
T ss_dssp HHHHHHHHHHH-HHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhh
Confidence 44555555554 55599999999999998732 22 56889999999999 999999999999998722 11
Q ss_pred -HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC----H---HHHHHHHHHHHHHHHHHHhHHH
Q 024419 75 -EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS----A---EVSRKIKRVSQLAKDKKRAQEV 131 (268)
Q Consensus 75 -~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~----~---~~~~~l~~~~~~~~~~~~a~~~ 131 (268)
..++..+|.++...|+|++|++.|+++....-++ . ..+...+.++...|+...|...
T Consensus 154 a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~ 218 (282)
T PF14938_consen 154 AAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKA 218 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4677899999999999999999999998754322 1 2344555666666777666544
No 177
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.64 E-value=1.1e-07 Score=53.77 Aligned_cols=40 Identities=15% Similarity=0.141 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419 43 LFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (268)
Q Consensus 43 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 82 (268)
++..+|.+|...|++++|+..|+++++.+|+++.++..+|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 3444444444444444444444444444444444444443
No 178
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.63 E-value=1.1e-07 Score=53.72 Aligned_cols=44 Identities=18% Similarity=0.296 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024419 75 EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRV 118 (268)
Q Consensus 75 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 118 (268)
+.+++.+|.+|...|++++|+..|+++++.+|+++.++..++.+
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l 44 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL 44 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence 35789999999999999999999999999999999999998753
No 179
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.60 E-value=1.7e-06 Score=68.08 Aligned_cols=129 Identities=19% Similarity=0.207 Sum_probs=109.4
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHH----------h---
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTI----------S--- 69 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al----------~--- 69 (268)
+|.+--.+..+|.+|+..++|..|.++|++.-.+.|......+..+..+++.+.+..|+....... +
T Consensus 40 ~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqa 119 (459)
T KOG4340|consen 40 SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQA 119 (459)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 566666889999999999999999999999999999998888888888888888877766443222 1
Q ss_pred -----------------hCC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHH
Q 024419 70 -----------------LNP--QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQE 130 (268)
Q Consensus 70 -----------------~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~ 130 (268)
.-| +.+....+.|.+.++.|+++.|++-|+.+++..--++-.-++++.++...+++..|..
T Consensus 120 AIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk 199 (459)
T KOG4340|consen 120 AIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALK 199 (459)
T ss_pred HHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHH
Confidence 124 3567788999999999999999999999999999999999999999999999999976
Q ss_pred H
Q 024419 131 V 131 (268)
Q Consensus 131 ~ 131 (268)
.
T Consensus 200 ~ 200 (459)
T KOG4340|consen 200 H 200 (459)
T ss_pred H
Confidence 5
No 180
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.59 E-value=3.4e-06 Score=61.68 Aligned_cols=69 Identities=22% Similarity=0.211 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc----------CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 024419 57 LNKALADAETTISLNPQWEKGYFRKGCILEAME----------QYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDK 125 (268)
Q Consensus 57 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~----------~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~ 125 (268)
|+.|.+.++.....||.+++.+++.|.++..+. .+++|+.-|+.+|.++|+...++..+|.++...+..
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 678999999999999999999999999988763 457899999999999999999999999998777643
No 181
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.58 E-value=1.6e-06 Score=64.36 Aligned_cols=100 Identities=10% Similarity=0.157 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419 42 TLFSNRAAAFLHLVKLNKALADAETTISLNPQW-----EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIK 116 (268)
Q Consensus 42 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~ 116 (268)
.-+-.-|.-++..|+|.+|.+-|..||.+.|.. ...|.+.|.++.+++.++.|++.+.++++++|.+..++.+.+
T Consensus 96 d~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRA 175 (271)
T KOG4234|consen 96 DSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRA 175 (271)
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHH
Confidence 334556888999999999999999999999975 356888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHhhhhhHHHhhh
Q 024419 117 RVSQLAKDKKRAQEVENIRSNVDMVQH 143 (268)
Q Consensus 117 ~~~~~~~~~~~a~~~~~~~~~~~~~~~ 143 (268)
.+|..+..++.|.+ .+++.....+.
T Consensus 176 eayek~ek~eeale--DyKki~E~dPs 200 (271)
T KOG4234|consen 176 EAYEKMEKYEEALE--DYKKILESDPS 200 (271)
T ss_pred HHHHhhhhHHHHHH--HHHHHHHhCcc
Confidence 99999999998843 33444444333
No 182
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.56 E-value=8.1e-08 Score=50.79 Aligned_cols=32 Identities=22% Similarity=0.386 Sum_probs=19.7
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHccCHHHHH
Q 024419 64 AETTISLNPQWEKGYFRKGCILEAMEQYDDAL 95 (268)
Q Consensus 64 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~ 95 (268)
|+++|+++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 55666666666666666666666666666554
No 183
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.55 E-value=4.7e-08 Score=77.87 Aligned_cols=98 Identities=29% Similarity=0.461 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 024419 9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAM 88 (268)
Q Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 88 (268)
-....+...+..|.++.|++.|..++.++|.+...+..++.++++++++..|+..|..++.++|+....|-..|.+...+
T Consensus 116 e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rll 195 (377)
T KOG1308|consen 116 DKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLL 195 (377)
T ss_pred HHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHh
Confidence 34456667788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhhCC
Q 024419 89 EQYDDALSAFQTALQYNP 106 (268)
Q Consensus 89 ~~~~~A~~~~~~~l~~~p 106 (268)
|++++|...+..+.+++=
T Consensus 196 g~~e~aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 196 GNWEEAAHDLALACKLDY 213 (377)
T ss_pred hchHHHHHHHHHHHhccc
Confidence 999999999999998864
No 184
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.54 E-value=1.9e-06 Score=67.29 Aligned_cols=88 Identities=19% Similarity=0.180 Sum_probs=82.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHH
Q 024419 44 FSNRAAAFLHLVKLNKALADAETTISLNPQW---EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS---AEVSRKIKR 117 (268)
Q Consensus 44 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~l~~ 117 (268)
.++.|.-++..|+|..|...|..-++.-|+. +.++|.||.+++.+|+|++|...|..+.+-.|++ ++++..||.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 7899999999999999999999999999985 6899999999999999999999999999988876 688999999
Q ss_pred HHHHHHHHHHhHHH
Q 024419 118 VSQLAKDKKRAQEV 131 (268)
Q Consensus 118 ~~~~~~~~~~a~~~ 131 (268)
+...+++.++|...
T Consensus 224 ~~~~l~~~d~A~at 237 (262)
T COG1729 224 SLGRLGNTDEACAT 237 (262)
T ss_pred HHHHhcCHHHHHHH
Confidence 99999999999765
No 185
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.52 E-value=8e-06 Score=60.02 Aligned_cols=121 Identities=21% Similarity=0.251 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--CHHHHHHHHHHH
Q 024419 9 SLKDKGNEFFKAGNYLKAAALYTQAIK-QDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ--WEKGYFRKGCIL 85 (268)
Q Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~ 85 (268)
.-+.+|+.+...|++.+|...|++++. +.-.+...+..++.+.+..+++..|...+++..+.+|. .++....+|.++
T Consensus 91 nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~l 170 (251)
T COG4700 91 NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTL 170 (251)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHH
Confidence 446688888999999999999999886 35577888999999999999999999999999999886 477888889999
Q ss_pred HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHH
Q 024419 86 EAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQE 130 (268)
Q Consensus 86 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~ 130 (268)
...|++.+|...|+.++...|+- .+....+..+..+|...++..
T Consensus 171 aa~g~~a~Aesafe~a~~~ypg~-~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 171 AAQGKYADAESAFEVAISYYPGP-QARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HhcCCchhHHHHHHHHHHhCCCH-HHHHHHHHHHHHhcchhHHHH
Confidence 99999999999999999988864 444445666666776655543
No 186
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.51 E-value=2.5e-05 Score=60.16 Aligned_cols=194 Identities=16% Similarity=0.170 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH-
Q 024419 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIK--QDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC- 83 (268)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~- 83 (268)
.......+..+...+++..++..+...+. ..+.....+...|.++...+++..++..+.+++..++.........+.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 45667788888888888888888888887 677888888888888888888888888888888887777555666666
Q ss_pred HHHHccCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhh
Q 024419 84 ILEAMEQYDDALSAFQTALQYNP---QSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEEC 160 (268)
Q Consensus 84 ~~~~~~~~~~A~~~~~~~l~~~p---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (268)
++...|+++.|...+.+++..+| .........+..+...+..+.+..... ......+.. ......
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~--~~~~~~~~~----------~~~~~~ 206 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLE--KALKLNPDD----------DAEALL 206 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHH--HHHhhCccc----------chHHHH
Confidence 78888889888888888888777 345555555555556666666654421 111111100 112222
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhchhH----------HHHHhhhhhhhHhhhhHHhcCCcc
Q 024419 161 WKHVFSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKA 212 (268)
Q Consensus 161 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~~~ 212 (268)
..+......+.++.++..+..++...|. .+...+....+...+..++...+.
T Consensus 207 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 207 NLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 3333344444667777777776666653 233555677777777777777664
No 187
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.51 E-value=6.1e-05 Score=58.00 Aligned_cols=223 Identities=20% Similarity=0.250 Sum_probs=155.6
Q ss_pred HHHHHHHHH-cCCHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCHHHHHHHHHHH
Q 024419 11 KDKGNEFFK-AGNYLKAAALYTQAIKQDPS--NPTLFSNRAAAFLHLVKLNKALADAETTIS--LNPQWEKGYFRKGCIL 85 (268)
Q Consensus 11 ~~~g~~~~~-~~~~~~A~~~~~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~ 85 (268)
...+..... .+.+..+...+...+...+. ........+.++...+++..+...+...+. ..+.....+...|..+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (291)
T COG0457 26 LEAGLALLELLGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLL 105 (291)
T ss_pred HHhhhhhhHHHhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHH
Confidence 333333333 57889999999999999887 488899999999999999999999999997 7888899999999999
Q ss_pred HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH-HHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHH
Q 024419 86 EAMEQYDDALSAFQTALQYNPQSAEVSRKIKR-VSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHV 164 (268)
Q Consensus 86 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (268)
...+++..++..+.+++...+.........+. ++...+.++.+....... +...+. ...........+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--~~~~~~--------~~~~~~~~~~~~~ 175 (291)
T COG0457 106 EALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKA--LELDPE--------LNELAEALLALGA 175 (291)
T ss_pred HHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHH--HhcCCC--------ccchHHHHHHhhh
Confidence 99999999999999999988887665555555 777888888887664322 111110 0000011111111
Q ss_pred HHHHHHHHHHHHHhhhhhhhchhH-----------HHHHhhhhhhhHhhhhHHhcCCccc-cCccchhHHHHHHHHH--H
Q 024419 165 FSFVVETMETAVKSWHETSKVDAK-----------VYFLLDKEKTDTEKYAPIVNVDKAF-ESPHTHGSCFQFLRQY--A 230 (268)
Q Consensus 165 ~~~~~~~~~~A~~~~~~~~~~~~~-----------~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--a 230 (268)
.....+.++.++..+.+++...+. .+...++...+...+..++...+.. ......+..+...+.+ +
T Consensus 176 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (291)
T COG0457 176 LLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEA 255 (291)
T ss_pred HHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHH
Confidence 133455666677776666555554 3556667889999999999987751 1112233344433334 8
Q ss_pred HHHHHHHhhhhCCC
Q 024419 231 DDSFSSAACLVAPK 244 (268)
Q Consensus 231 ~~~~~ka~~~~~p~ 244 (268)
...+.+++ ..+|.
T Consensus 256 ~~~~~~~~-~~~~~ 268 (291)
T COG0457 256 LEALEKAL-ELDPD 268 (291)
T ss_pred HHHHHHHH-HhCcc
Confidence 88999999 88886
No 188
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.49 E-value=1.2e-06 Score=70.80 Aligned_cols=102 Identities=17% Similarity=0.117 Sum_probs=84.3
Q ss_pred HHHHHHHHHcC--CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 024419 11 KDKGNEFFKAG--NYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAM 88 (268)
Q Consensus 11 ~~~g~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 88 (268)
...+.+.+..| ++.+|.-.|++..+..|.++..+..+|.|++.+|+|++|.+.+.+++..+|++++++.+++.+...+
T Consensus 169 La~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~ 248 (290)
T PF04733_consen 169 LAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHL 248 (290)
T ss_dssp HHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHh
Confidence 33444555555 6999999999998888899999999999999999999999999999999999999999999999999
Q ss_pred cCH-HHHHHHHHHHHhhCCCCHHHH
Q 024419 89 EQY-DDALSAFQTALQYNPQSAEVS 112 (268)
Q Consensus 89 ~~~-~~A~~~~~~~l~~~p~~~~~~ 112 (268)
|+. +.+.+.+.+....+|+++.+-
T Consensus 249 gk~~~~~~~~l~qL~~~~p~h~~~~ 273 (290)
T PF04733_consen 249 GKPTEAAERYLSQLKQSNPNHPLVK 273 (290)
T ss_dssp T-TCHHHHHHHHHCHHHTTTSHHHH
T ss_pred CCChhHHHHHHHHHHHhCCCChHHH
Confidence 998 566778888888999987653
No 189
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.48 E-value=3.2e-07 Score=48.66 Aligned_cols=32 Identities=22% Similarity=0.406 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 024419 42 TLFSNRAAAFLHLVKLNKALADAETTISLNPQ 73 (268)
Q Consensus 42 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 73 (268)
.+|+++|.++..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34555555555555555555555555555554
No 190
>PLN03077 Protein ECB2; Provisional
Probab=98.47 E-value=2.3e-05 Score=73.48 Aligned_cols=213 Identities=8% Similarity=0.005 Sum_probs=137.8
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCChHHH----------------------------------HHHHHH
Q 024419 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ-DPSNPTLF----------------------------------SNRAAA 50 (268)
Q Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~----------------------------------~~~a~~ 50 (268)
+...|..+...+...|++++|+..|++.+.. .|+..... ..+-..
T Consensus 454 d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~ 533 (857)
T PLN03077 454 DVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDL 533 (857)
T ss_pred CeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHH
Confidence 3456778888899999999999999998754 34432222 123367
Q ss_pred HHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHHHHHHHh
Q 024419 51 FLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQY--NPQSAEVSRKIKRVSQLAKDKKRA 128 (268)
Q Consensus 51 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~~~~~~a 128 (268)
|.+.|+.++|...|+.. +.+...|..+...|...|+.++|++.|++..+. .|+... +..+-..+...|..++|
T Consensus 534 y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T-~~~ll~a~~~~g~v~ea 608 (857)
T PLN03077 534 YVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT-FISLLCACSRSGMVTQG 608 (857)
T ss_pred HHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCccc-HHHHHHHHhhcChHHHH
Confidence 88899999999999886 567789999999999999999999999998874 565544 44444556677888888
Q ss_pred HHHHhhhh-hHHHhhhHHHHHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH---------HHHHhhhhhh
Q 024419 129 QEVENIRS-NVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK---------VYFLLDKEKT 198 (268)
Q Consensus 129 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~~~~ 198 (268)
.++..... .....+....+ ...-....-.|++++|.+.+++. .+.|+ .+..-++.+.
T Consensus 609 ~~~f~~M~~~~gi~P~~~~y------------~~lv~~l~r~G~~~eA~~~~~~m-~~~pd~~~~~aLl~ac~~~~~~e~ 675 (857)
T PLN03077 609 LEYFHSMEEKYSITPNLKHY------------ACVVDLLGRAGKLTEAYNFINKM-PITPDPAVWGALLNACRIHRHVEL 675 (857)
T ss_pred HHHHHHHHHHhCCCCchHHH------------HHHHHHHHhCCCHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCChHH
Confidence 77643211 11111111111 11111122346677777777764 23343 2345567777
Q ss_pred hHhhhhHHhcCCccccCccc-hhHHHHHHHHH--HHHHHHH
Q 024419 199 DTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--ADDSFSS 236 (268)
Q Consensus 199 a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--a~~~~~k 236 (268)
+....+++++++|....... .+..|...|++ +.+..+.
T Consensus 676 ~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~ 716 (857)
T PLN03077 676 GELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKT 716 (857)
T ss_pred HHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHH
Confidence 77778888898886533332 45555556655 4444433
No 191
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.46 E-value=2e-07 Score=49.30 Aligned_cols=34 Identities=29% Similarity=0.506 Sum_probs=31.7
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHH
Q 024419 29 LYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALA 62 (268)
Q Consensus 29 ~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~ 62 (268)
+|+++|+++|+++.+|+++|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 4789999999999999999999999999999863
No 192
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.44 E-value=7.3e-05 Score=55.11 Aligned_cols=118 Identities=12% Similarity=0.058 Sum_probs=99.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHccCH
Q 024419 13 KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS-LNPQWEKGYFRKGCILEAMEQY 91 (268)
Q Consensus 13 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~~~~ 91 (268)
.+....+.=|.+.+.....+.+...|+. .-.+.+|......|++.+|...|++++. +..+++..+..++...+..+++
T Consensus 62 ~~~a~~q~ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~ 140 (251)
T COG4700 62 LLMALQQKLDPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEF 140 (251)
T ss_pred HHHHHHHhcChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccH
Confidence 3444455557777777777777777754 4567899999999999999999999986 5667889999999999999999
Q ss_pred HHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHHHHHHHhHHH
Q 024419 92 DDALSAFQTALQYNPQS--AEVSRKIKRVSQLAKDKKRAQEV 131 (268)
Q Consensus 92 ~~A~~~~~~~l~~~p~~--~~~~~~l~~~~~~~~~~~~a~~~ 131 (268)
..|...+++..+.+|.. +.....++..+..+|.+.+|+..
T Consensus 141 A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesa 182 (251)
T COG4700 141 AAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESA 182 (251)
T ss_pred HHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHH
Confidence 99999999999999864 77888899999999999888654
No 193
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.41 E-value=7e-06 Score=56.68 Aligned_cols=88 Identities=17% Similarity=0.190 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC----HHHHHHHHHH
Q 024419 43 LFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS----AEVSRKIKRV 118 (268)
Q Consensus 43 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~----~~~~~~l~~~ 118 (268)
.+-.-|.+....|+.+.|++.|.+++.+.|..+.+|.+.+..+.-+|+.++|++.+++++++.-+. ..++.+.|.+
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~l 124 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLL 124 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 344568888899999999999999999999999999999999999999999999999999997544 3478888899
Q ss_pred HHHHHHHHHhHH
Q 024419 119 SQLAKDKKRAQE 130 (268)
Q Consensus 119 ~~~~~~~~~a~~ 130 (268)
+...|+-+.|..
T Consensus 125 yRl~g~dd~AR~ 136 (175)
T KOG4555|consen 125 YRLLGNDDAARA 136 (175)
T ss_pred HHHhCchHHHHH
Confidence 999988887743
No 194
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.40 E-value=6.4e-07 Score=47.48 Aligned_cols=34 Identities=26% Similarity=0.594 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 024419 75 EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS 108 (268)
Q Consensus 75 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~ 108 (268)
+.+|+.+|.++..+|++++|+.+|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4689999999999999999999999999999974
No 195
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.39 E-value=1.1e-06 Score=46.57 Aligned_cols=31 Identities=19% Similarity=0.339 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 024419 43 LFSNRAAAFLHLVKLNKALADAETTISLNPQ 73 (268)
Q Consensus 43 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 73 (268)
+|+.+|.+++.+|++++|+.+|++++.++|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 3444444444444444444444444444443
No 196
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=1.6e-05 Score=63.66 Aligned_cols=122 Identities=19% Similarity=0.088 Sum_probs=109.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh-CCCC---HHHHHHHHHHHH
Q 024419 11 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL-NPQW---EKGYFRKGCILE 86 (268)
Q Consensus 11 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~~---~~~~~~la~~~~ 86 (268)
...+-.++..|++.+|...+++.++-.|++.-++..--.+++-+|+...-...+++.+-. +|+- ..++-.++-++.
T Consensus 107 h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~ 186 (491)
T KOG2610|consen 107 HAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLE 186 (491)
T ss_pred hhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHH
Confidence 345556778899999999999999999999999998889999999999999999999987 7776 556667788888
Q ss_pred HccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419 87 AMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE 132 (268)
Q Consensus 87 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 132 (268)
..|-|++|.+.-+++++++|.+..+...++.++...+++.++.++.
T Consensus 187 E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM 232 (491)
T KOG2610|consen 187 ECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFM 232 (491)
T ss_pred HhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHH
Confidence 9999999999999999999999999999999999999999998774
No 197
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.38 E-value=4.5e-05 Score=71.93 Aligned_cols=56 Identities=9% Similarity=0.011 Sum_probs=33.6
Q ss_pred HHHHhhhhhhhHhhhhHHhcCCccccCcc-------chhHHHHHHHHH--HHHHHHHHhhhhCCCC
Q 024419 189 VYFLLDKEKTDTEKYAPIVNVDKAFESPH-------THGSCFQFLRQY--ADDSFSSAACLVAPKS 245 (268)
Q Consensus 189 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~--a~~~~~ka~~~~~p~~ 245 (268)
++...|+..+|...+..++.......... ..+..+...|+. |...+.+|+ .+....
T Consensus 700 ~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al-~la~~~ 764 (903)
T PRK04841 700 AQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEAL-KLANRT 764 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHhCcc
Confidence 35566788888888888777522211111 134455555555 888888888 665543
No 198
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=1e-06 Score=67.00 Aligned_cols=89 Identities=13% Similarity=0.157 Sum_probs=82.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 024419 44 FSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAK 123 (268)
Q Consensus 44 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~ 123 (268)
+-.-|.+++....|..|+.+|.++|.++|..+..|.+.+.||.+..+++.......++++++|+....++.+|.......
T Consensus 13 lkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~ 92 (284)
T KOG4642|consen 13 LKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSK 92 (284)
T ss_pred HHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhc
Confidence 34457788888999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHhHHHH
Q 024419 124 DKKRAQEVE 132 (268)
Q Consensus 124 ~~~~a~~~~ 132 (268)
.++.|+...
T Consensus 93 ~~~eaI~~L 101 (284)
T KOG4642|consen 93 GYDEAIKVL 101 (284)
T ss_pred cccHHHHHH
Confidence 888887653
No 199
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.35 E-value=9.4e-05 Score=69.80 Aligned_cols=227 Identities=12% Similarity=-0.000 Sum_probs=142.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------H
Q 024419 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN-----PTLFSNRAAAFLHLVKLNKALADAETTISLNPQW------E 75 (268)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~ 75 (268)
......+|..+...|++++|...+++++...|.. ..+...+|.++...|++++|...+++++...... .
T Consensus 452 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~ 531 (903)
T PRK04841 452 AEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYAL 531 (903)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHH
Confidence 3445567888899999999999999999865543 2456788999999999999999999999764321 3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC--------CHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHH
Q 024419 76 KGYFRKGCILEAMEQYDDALSAFQTALQYNPQ--------SAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEF 147 (268)
Q Consensus 76 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 147 (268)
.++..+|.++...|+++.|...+++++.+... ....+..++.++...|++++|....... ..........
T Consensus 532 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~a--l~~~~~~~~~ 609 (903)
T PRK04841 532 WSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKG--LEVLSNYQPQ 609 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHh--HHhhhccCch
Confidence 46678899999999999999999999886321 2234557788888889999987653211 1111000000
Q ss_pred HHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH-----------------HHHHhhhhhhhHhhhhHHhcCC
Q 024419 148 KSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK-----------------VYFLLDKEKTDTEKYAPIVNVD 210 (268)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----------------~~~~~~~~~~a~~~~~~~~~~~ 210 (268)
.........+.+....++++.|...+..+..+.+. .+...|+.+.+...........
T Consensus 610 ------~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~ 683 (903)
T PRK04841 610 ------QQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPE 683 (903)
T ss_pred ------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCC
Confidence 00011222344455566677776666665443211 1223456666665554443321
Q ss_pred cccc-C----ccchhHHHHHHHHH--HHHHHHHHhhhhC
Q 024419 211 KAFE-S----PHTHGSCFQFLRQY--ADDSFSSAACLVA 242 (268)
Q Consensus 211 ~~~~-~----~~~~~~~~~~~~~~--a~~~~~ka~~~~~ 242 (268)
+... . ....+.++...+++ |...+++++ ...
T Consensus 684 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al-~~~ 721 (903)
T PRK04841 684 FANNHFLQGQWRNIARAQILLGQFDEAEIILEELN-ENA 721 (903)
T ss_pred CccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHH
Confidence 1110 0 01234445555666 888899988 653
No 200
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.35 E-value=1.5e-06 Score=45.97 Aligned_cols=34 Identities=21% Similarity=0.539 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 024419 75 EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS 108 (268)
Q Consensus 75 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~ 108 (268)
+.+++.+|.++..+|++++|++.|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4689999999999999999999999999999986
No 201
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.33 E-value=2.7e-05 Score=55.16 Aligned_cols=82 Identities=13% Similarity=0.144 Sum_probs=71.4
Q ss_pred CChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH---HH
Q 024419 39 SNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW---EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE---VS 112 (268)
Q Consensus 39 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~---~~ 112 (268)
..+..++.-|...++.|+|++|++.|+......|.. ..+.+.+|.+|+..+++++|+..+++-++++|+++. ++
T Consensus 8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~ 87 (142)
T PF13512_consen 8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY 87 (142)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 356789999999999999999999999999998864 588999999999999999999999999999999864 55
Q ss_pred HHHHHHHH
Q 024419 113 RKIKRVSQ 120 (268)
Q Consensus 113 ~~l~~~~~ 120 (268)
+..|.++.
T Consensus 88 Y~~gL~~~ 95 (142)
T PF13512_consen 88 YMRGLSYY 95 (142)
T ss_pred HHHHHHHH
Confidence 55555543
No 202
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.33 E-value=3.9e-05 Score=57.89 Aligned_cols=172 Identities=12% Similarity=0.028 Sum_probs=113.5
Q ss_pred CchHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 024419 2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK 81 (268)
Q Consensus 2 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 81 (268)
..|+.++++.-+|-.+...|+|+.|.+.|+..+++||+...++.++|..++--|++.-|.+.+.+--+.||+++---..+
T Consensus 94 i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWL 173 (297)
T COG4785 94 IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWL 173 (297)
T ss_pred cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHH
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999987322222
Q ss_pred HHHHHHccCHHHHHH-HHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhh
Q 024419 82 GCILEAMEQYDDALS-AFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEEC 160 (268)
Q Consensus 82 a~~~~~~~~~~~A~~-~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (268)
- +-...-+..+|.. ..+++-..+.+ ..-|...+-. +|+...-.-............ .+...+...+.
T Consensus 174 Y-l~E~k~dP~~A~tnL~qR~~~~d~e-~WG~~iV~~y---LgkiS~e~l~~~~~a~a~~n~-------~~Ae~LTEtyF 241 (297)
T COG4785 174 Y-LNEQKLDPKQAKTNLKQRAEKSDKE-QWGWNIVEFY---LGKISEETLMERLKADATDNT-------SLAEHLTETYF 241 (297)
T ss_pred H-HHHhhCCHHHHHHHHHHHHHhccHh-hhhHHHHHHH---HhhccHHHHHHHHHhhccchH-------HHHHHHHHHHH
Confidence 1 1223345666654 44455444432 2222222221 122111101111111111111 12233445667
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhc
Q 024419 161 WKHVFSFVVETMETAVKSWHETSKV 185 (268)
Q Consensus 161 ~~~~~~~~~~~~~~A~~~~~~~~~~ 185 (268)
+.+..+...|..++|...|+-++..
T Consensus 242 YL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 242 YLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHH
Confidence 7777788888888888888766543
No 203
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.31 E-value=2.8e-05 Score=62.99 Aligned_cols=120 Identities=17% Similarity=0.178 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC---------
Q 024419 9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN------PTLFSNRAAAFLHLVKLNKALADAETTISLNPQ--------- 73 (268)
Q Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--------- 73 (268)
....+|+.+...+.++++++.|+.|++...++ ..++..+|..+....++++|.-+..+|..+-..
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k 203 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK 203 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH
Confidence 44556777777777777888877777763322 256667777777777888777777777765321
Q ss_pred -CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHHHHHHHh
Q 024419 74 -WEKGYFRKGCILEAMEQYDDALSAFQTALQYN------PQSAEVSRKIKRVSQLAKDKKRA 128 (268)
Q Consensus 74 -~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~------p~~~~~~~~l~~~~~~~~~~~~a 128 (268)
...+.+.++..+...|+.-+|.++.+.+.++. |-......-++.+|...|+.+.|
T Consensus 204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~a 265 (518)
T KOG1941|consen 204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERA 265 (518)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHH
Confidence 12455667777777777777777777776653 22234455566666666665554
No 204
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.27 E-value=0.00083 Score=55.17 Aligned_cols=239 Identities=11% Similarity=0.039 Sum_probs=148.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024419 8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPS-NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILE 86 (268)
Q Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 86 (268)
-++..-+...-..|+++.|-.+..++-+..++ ...+...++......|++..|.....+++...|.++.+..-.-.+|.
T Consensus 119 l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~ 198 (400)
T COG3071 119 LAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYI 198 (400)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHH
Confidence 35566677778899999999999999998554 45688889999999999999999999999999999999999999999
Q ss_pred HccCHHHHHHHHHHHHhhCCCCHH---HHHHHHHH--HHHHHHHHHhHH----HHhhhhhHHHhhhHHHHHHHhhhhcCc
Q 024419 87 AMEQYDDALSAFQTALQYNPQSAE---VSRKIKRV--SQLAKDKKRAQE----VENIRSNVDMVQHLDEFKSEMSEKYGA 157 (268)
Q Consensus 87 ~~~~~~~A~~~~~~~l~~~p~~~~---~~~~l~~~--~~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (268)
..|++........+.-+-.--+.+ -+.+-+.. .....+-..+.. ...........+.+..-...-...++.
T Consensus 199 ~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~ 278 (400)
T COG3071 199 RLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGD 278 (400)
T ss_pred HhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCC
Confidence 999999888777776654332211 11111111 011111111111 111122222222222222222222232
Q ss_pred hhhhHHHHHHH-----------------HHHH---HHHHHhhhhhhhchhH-------HHHHhhhhhhhHhhhhHHhcCC
Q 024419 158 EECWKHVFSFV-----------------VETM---ETAVKSWHETSKVDAK-------VYFLLDKEKTDTEKYAPIVNVD 210 (268)
Q Consensus 158 ~~~~~~~~~~~-----------------~~~~---~~A~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~ 210 (268)
...+..++... -++. .++++.+-+-..-+|. .++.-+.+.+|.++++.++...
T Consensus 279 ~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~ 358 (400)
T COG3071 279 HDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLR 358 (400)
T ss_pred hHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcC
Confidence 22222221111 1222 2233333333333343 3445567889999999999998
Q ss_pred ccccCccchhHHHHHHHHH--HHHHHHHHhhhhCCCCc
Q 024419 211 KAFESPHTHGSCFQFLRQY--ADDSFSSAACLVAPKSI 246 (268)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~--a~~~~~ka~~~~~p~~~ 246 (268)
|+.......+..+..+|+- |...++.++...-+.+.
T Consensus 359 ~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~~ 396 (400)
T COG3071 359 PSASDYAELADALDQLGEPEEAEQVRREALLLTRQPNL 396 (400)
T ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCC
Confidence 8775555688888888855 99999999834344443
No 205
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.26 E-value=5.1e-05 Score=61.35 Aligned_cols=124 Identities=13% Similarity=0.062 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-cCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 024419 9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLH-LVKLNKALADAETTISLNPQWEKGYFRKGCILEA 87 (268)
Q Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 87 (268)
+|....+.....+..+.|...|.+|++..+.+..+|...|.+.+. .++.+.|...|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 567777888888889999999999997777788999999999777 5666669999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHHHHHHHhHHHH
Q 024419 88 MEQYDDALSAFQTALQYNPQSA---EVSRKIKRVSQLAKDKKRAQEVE 132 (268)
Q Consensus 88 ~~~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~~~~~~a~~~~ 132 (268)
.++.+.|...|++++..-|... .+|..........|+.+....+.
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~ 130 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVE 130 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999877665 57777777777777777665553
No 206
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=98.25 E-value=7.9e-05 Score=54.05 Aligned_cols=94 Identities=20% Similarity=0.189 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----------------------hHHHHHHHHHHHHcCChHHHHHHHHH
Q 024419 9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN----------------------PTLFSNRAAAFLHLVKLNKALADAET 66 (268)
Q Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----------------------~~~~~~~a~~~~~~~~~~~A~~~~~~ 66 (268)
.+...|......++.+.++..+.+++.+.... ..+...++..+...|++++|+..+++
T Consensus 8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 87 (146)
T PF03704_consen 8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQR 87 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 44556777788899999999999999985332 13344456666667777777777777
Q ss_pred HHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 024419 67 TISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTAL 102 (268)
Q Consensus 67 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l 102 (268)
++..+|.+-.+|..+-.++...|+...|+..|+++.
T Consensus 88 ~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 88 ALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 777777777777777777777777777777766654
No 207
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=9.9e-05 Score=58.37 Aligned_cols=121 Identities=21% Similarity=0.222 Sum_probs=85.9
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH--HHHHH-HH
Q 024419 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWE--KGYFR-KG 82 (268)
Q Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~-la 82 (268)
..+.-+..+......|++.+|...+..++...|++..+...++.||...|+.+.|...+... |... +.+.. .+
T Consensus 133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~l----P~~~~~~~~~~l~a 208 (304)
T COG3118 133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAAL----PLQAQDKAAHGLQA 208 (304)
T ss_pred HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhC----cccchhhHHHHHHH
Confidence 34456677888999999999999999999999999999999999999999998887766442 3221 11111 11
Q ss_pred --HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHH
Q 024419 83 --CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV 131 (268)
Q Consensus 83 --~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 131 (268)
..+.+.....+ +..+++.+..+|++..+-..++..+...|+.+.|.+.
T Consensus 209 ~i~ll~qaa~~~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~ 258 (304)
T COG3118 209 QIELLEQAAATPE-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEH 258 (304)
T ss_pred HHHHHHHHhcCCC-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 22222222222 2445666777788888888888887777777777654
No 208
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.18 E-value=0.00027 Score=59.39 Aligned_cols=196 Identities=14% Similarity=0.107 Sum_probs=143.4
Q ss_pred HHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHH
Q 024419 33 AIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVS 112 (268)
Q Consensus 33 al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 112 (268)
.+..+-.+...|...|.--..++++..|.+.|++||..+..+...|...+.+-.+.+....|...+.+++.+-|..-..|
T Consensus 65 ~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlW 144 (677)
T KOG1915|consen 65 QIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLW 144 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHH
Confidence 34445556778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHH--HHHHHHHHHHHHHHhhhhhhhchhHH-
Q 024419 113 RKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKH--VFSFVVETMETAVKSWHETSKVDAKV- 189 (268)
Q Consensus 113 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~A~~~~~~~~~~~~~~- 189 (268)
+........+|+...|..+.. ... ...+ ....+.. .+..--+..+.|...|++-+-.+|++
T Consensus 145 yKY~ymEE~LgNi~gaRqife------rW~-------~w~P---~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~ 208 (677)
T KOG1915|consen 145 YKYIYMEEMLGNIAGARQIFE------RWM-------EWEP---DEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVS 208 (677)
T ss_pred HHHHHHHHHhcccHHHHHHHH------HHH-------cCCC---cHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHH
Confidence 999888889999988876631 111 1111 1112222 23445677888999999998889972
Q ss_pred --------HHHhhhhhhhHhhhhHHhcCCccccCccchhHHH----HHHHHH--HHHHHHHHhhhhCCCC
Q 024419 190 --------YFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCF----QFLRQY--ADDSFSSAACLVAPKS 245 (268)
Q Consensus 190 --------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~--a~~~~~ka~~~~~p~~ 245 (268)
-..-|....+...|+.+++.-.+.......-.++ .....+ |...|.-|+ ..-|++
T Consensus 209 ~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAl-d~~pk~ 277 (677)
T KOG1915|consen 209 NWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYAL-DHIPKG 277 (677)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcc
Confidence 1244778888889999988632211111111122 122233 777788888 777765
No 209
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.17 E-value=0.00061 Score=59.34 Aligned_cols=100 Identities=18% Similarity=0.180 Sum_probs=80.3
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCC-----hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC---
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ-DPSN-----PTLFSNRAAAFLHLVKLNKALADAETTISLNPQ--- 73 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--- 73 (268)
+|.+.+.|..+.. +..|+..+-+..|.+|+.. +|.. ...|...|..|...|+.+.|...|+++++.+-.
T Consensus 345 n~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~ 422 (835)
T KOG2047|consen 345 NPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVE 422 (835)
T ss_pred CCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchH
Confidence 4566666666544 4568889999999998864 6643 478999999999999999999999999987543
Q ss_pred -CHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 024419 74 -WEKGYFRKGCILEAMEQYDDALSAFQTALQY 104 (268)
Q Consensus 74 -~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 104 (268)
-..+|...|..-....+++.|+...+++...
T Consensus 423 dLa~vw~~waemElrh~~~~~Al~lm~~A~~v 454 (835)
T KOG2047|consen 423 DLAEVWCAWAEMELRHENFEAALKLMRRATHV 454 (835)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC
Confidence 2678999999989999999999999998755
No 210
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.16 E-value=6.9e-05 Score=60.78 Aligned_cols=125 Identities=14% Similarity=0.061 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------H
Q 024419 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN-----PTLFSNRAAAFLHLVKLNKALADAETTISLNPQW------E 75 (268)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~ 75 (268)
.+++.+++..+...-++.+++.+-.-.+...... ..++..+|.++..++.++++++.|++|+++...+ -
T Consensus 83 ~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LEl 162 (518)
T KOG1941|consen 83 LEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLEL 162 (518)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeee
Confidence 3567777777778788888888888877764433 3567779999999999999999999999874432 3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC----------HHHHHHHHHHHHHHHHHHHhHHH
Q 024419 76 KGYFRKGCILEAMEQYDDALSAFQTALQYNPQS----------AEVSRKIKRVSQLAKDKKRAQEV 131 (268)
Q Consensus 76 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~----------~~~~~~l~~~~~~~~~~~~a~~~ 131 (268)
.++..+|..+...+++++|.-+..++.++..+. ..+++.++..+..+|..-.|.+.
T Consensus 163 qvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~ 228 (518)
T KOG1941|consen 163 QVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMEC 228 (518)
T ss_pred ehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHH
Confidence 578889999999999999999999988774322 34566777777788887777665
No 211
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.14 E-value=0.0012 Score=57.54 Aligned_cols=126 Identities=9% Similarity=0.059 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC----------
Q 024419 8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN----PTLFSNRAAAFLHLVKLNKALADAETTISLNPQ---------- 73 (268)
Q Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---------- 73 (268)
.-|...|..|...|+.+.|...|+++++..-.. ..+|+.-|..-+...+++.|+++.+.|...-..
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~ 467 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE 467 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence 457889999999999999999999999985433 578999999999999999999999999865211
Q ss_pred --------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHh
Q 024419 74 --------WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVEN 133 (268)
Q Consensus 74 --------~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 133 (268)
...+|-.++......|-++.....|++++.+.--.|.+..+.+..+..-..++++.+..+
T Consensus 468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YE 535 (835)
T KOG2047|consen 468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYE 535 (835)
T ss_pred cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 245677788888888999999999999999988889999999988888777888866544
No 212
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.10 E-value=0.0026 Score=49.63 Aligned_cols=72 Identities=17% Similarity=0.122 Sum_probs=66.1
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH
Q 024419 40 NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW---EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111 (268)
Q Consensus 40 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 111 (268)
.+..|++-|...+..|++++|++.|+.+...+|.. ..+.+.++.++++.+++++|+...++-+.+.|+++.+
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~ 107 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA 107 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh
Confidence 46789999999999999999999999999998875 5789999999999999999999999999999988653
No 213
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.09 E-value=0.00016 Score=61.10 Aligned_cols=121 Identities=9% Similarity=0.054 Sum_probs=95.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-----------------
Q 024419 11 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ----------------- 73 (268)
Q Consensus 11 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~----------------- 73 (268)
..+.....+..+.+.-++.-.+||+++|+.+.+|.-+|.-. .....+|...|+++++....
T Consensus 172 q~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~ 249 (539)
T PF04184_consen 172 QEIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEA 249 (539)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhh
Confidence 34555667889999999999999999999999999887422 33456677777776654210
Q ss_pred --------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHHHHHhHHHHh
Q 024419 74 --------WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQ--SAEVSRKIKRVSQLAKDKKRAQEVEN 133 (268)
Q Consensus 74 --------~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~l~~~~~~~~~~~~a~~~~~ 133 (268)
.+.+..++|+|..+.|+.++|++.++..++.+|. +..++..|..++..++.+.++..+..
T Consensus 250 ~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~ 319 (539)
T PF04184_consen 250 WHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLA 319 (539)
T ss_pred hhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 1345678999999999999999999999998875 56789999999999999998887743
No 214
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=98.08 E-value=0.00084 Score=55.74 Aligned_cols=117 Identities=14% Similarity=-0.003 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCChHHHHHHHHHHHH---cCChHHHHHHHHHH-HhhCCCCHHHH
Q 024419 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQ----DPSNPTLFSNRAAAFLH---LVKLNKALADAETT-ISLNPQWEKGY 78 (268)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~~a~~~~~---~~~~~~A~~~~~~a-l~~~p~~~~~~ 78 (268)
++...++-..|...++|+.-+...+..-.+ -++...+.+.+|.++-+ .|+.++|+..+..+ ....+.+++.+
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 445566667788888898888888887766 45567788888988888 89999999999884 44566778888
Q ss_pred HHHHHHHHHc---------cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 024419 79 FRKGCILEAM---------EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKD 124 (268)
Q Consensus 79 ~~la~~~~~~---------~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~ 124 (268)
..+|.+|... ...++|+..|.++.+++|+. ..-.+++.++...|.
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~ 274 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGH 274 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCC
Confidence 8889888753 24678999999999998644 333344445444443
No 215
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.08 E-value=7.8e-05 Score=57.92 Aligned_cols=106 Identities=19% Similarity=0.206 Sum_probs=89.0
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cC--CCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHH
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIK----QD--PSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEK 76 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~----~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~ 76 (268)
+|.++.-...+|...++-|+.+.|..++++.-+ ++ .....+..+.+.+|.-.+++..|...|.+++..||.++.
T Consensus 208 ~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~ 287 (366)
T KOG2796|consen 208 PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAV 287 (366)
T ss_pred CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchh
Confidence 456677778889999999999999999985433 22 234567778888888999999999999999999999999
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 024419 77 GYFRKGCILEAMEQYDDALSAFQTALQYNPQS 108 (268)
Q Consensus 77 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~ 108 (268)
+-.+.|.|+..+|+..+|++..+.++...|..
T Consensus 288 a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 288 ANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 99999999999999999999999999999865
No 216
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=98.03 E-value=1.1e-05 Score=42.51 Aligned_cols=30 Identities=27% Similarity=0.376 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 024419 43 LFSNRAAAFLHLVKLNKALADAETTISLNP 72 (268)
Q Consensus 43 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p 72 (268)
+|+.+|.+|..+|++++|+..|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 344444444444444444444444444444
No 217
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=0.00021 Score=55.66 Aligned_cols=123 Identities=13% Similarity=0.125 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC------CCHHHHHHH
Q 024419 9 SLKDKGNEFFKAGNYLKAAALYTQAIKQD-PSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP------QWEKGYFRK 81 (268)
Q Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~l 81 (268)
..+....++.-.|+|.-....+.+.++.+ |.++.....+|.+-++.|+.+.|...|+.+-+.+. .+..++.+.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 44566778888899999999999999998 67888899999999999999999999996554322 345678888
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHH
Q 024419 82 GCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV 131 (268)
Q Consensus 82 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 131 (268)
+.+|.-.++|.+|...|.+++..||.++.+...-+.|....|+...|.+.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~ 308 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQ 308 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999888665
No 218
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.00 E-value=0.00022 Score=63.99 Aligned_cols=112 Identities=18% Similarity=0.159 Sum_probs=97.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHH
Q 024419 15 NEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDA 94 (268)
Q Consensus 15 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A 94 (268)
.-....+++.+|+....+.++..|+...+....|..+.++|+.++|..+++..-...+++...+--+-.||..++++++|
T Consensus 17 ~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 17 YDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 34467789999999999999999999999999999999999999999887777777777888888889999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q 024419 95 LSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKR 127 (268)
Q Consensus 95 ~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~ 127 (268)
..+|++++..+|+ .+....+=.++...+.+.+
T Consensus 97 ~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~ 128 (932)
T KOG2053|consen 97 VHLYERANQKYPS-EELLYHLFMAYVREKSYKK 128 (932)
T ss_pred HHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 7777777677766666644
No 219
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=97.99 E-value=3.4e-05 Score=65.34 Aligned_cols=107 Identities=27% Similarity=0.309 Sum_probs=96.9
Q ss_pred hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc---CChHHHHHHHHHHHhhCCCCHHHHHH
Q 024419 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHL---VKLNKALADAETTISLNPQWEKGYFR 80 (268)
Q Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~ 80 (268)
|..++.++..|+-.+..+....|+..|.++++.-|.....+.+++.++++. |+.-.|+..+..++.+||....+|+.
T Consensus 371 ~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~ 450 (758)
T KOG1310|consen 371 PENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFR 450 (758)
T ss_pred hHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHH
Confidence 456777888888888888999999999999999999999999999999875 67789999999999999999999999
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCCHH
Q 024419 81 KGCILEAMEQYDDALSAFQTALQYNPQSAE 110 (268)
Q Consensus 81 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 110 (268)
|+.++..++++.+|+++...+....|.+..
T Consensus 451 la~aL~el~r~~eal~~~~alq~~~Ptd~a 480 (758)
T KOG1310|consen 451 LARALNELTRYLEALSCHWALQMSFPTDVA 480 (758)
T ss_pred HHHHHHHHhhHHHhhhhHHHHhhcCchhhh
Confidence 999999999999999999888888886544
No 220
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.99 E-value=1.5e-05 Score=42.07 Aligned_cols=33 Identities=36% Similarity=0.754 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 024419 76 KGYFRKGCILEAMEQYDDALSAFQTALQYNPQS 108 (268)
Q Consensus 76 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~ 108 (268)
.+|+.+|.++..+|++++|++.|+++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 579999999999999999999999999999954
No 221
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=0.00065 Score=54.58 Aligned_cols=91 Identities=11% Similarity=0.127 Sum_probs=80.9
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhhC---CC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419 41 PTLFSNRAAAFLHLVKLNKALADAETTISLN---PQ-WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIK 116 (268)
Q Consensus 41 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~ 116 (268)
+.-+-.-|+-|++-.+|..|+.+|.+.|+.. |+ ++..|.++|.+....|+|..|+....+++.++|.+..++.+-+
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 3456667999999999999999999999874 33 4678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHH
Q 024419 117 RVSQLAKDKKRAQEV 131 (268)
Q Consensus 117 ~~~~~~~~~~~a~~~ 131 (268)
.++..++.+..|..+
T Consensus 161 kc~~eLe~~~~a~nw 175 (390)
T KOG0551|consen 161 KCLLELERFAEAVNW 175 (390)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999997777654
No 222
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.92 E-value=0.0042 Score=47.68 Aligned_cols=124 Identities=15% Similarity=0.210 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----C--CChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------H
Q 024419 8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQD----P--SNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW------E 75 (268)
Q Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~----p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~ 75 (268)
+.+..-|+.+-..++|..|=..|-++-... . +.+..|...+.||.+. ++.+|+.++++++++-.+. +
T Consensus 35 dl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~-~~~eAv~cL~~aieIyt~~Grf~~aA 113 (288)
T KOG1586|consen 35 ELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKV-DPEEAVNCLEKAIEIYTDMGRFTMAA 113 (288)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 334445555556667777777777765442 1 1256677777777555 8999999999999886543 3
Q ss_pred HHHHHHHHHHHHc-cCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHHHHHhHHHH
Q 024419 76 KGYFRKGCILEAM-EQYDDALSAFQTALQYNPQS------AEVSRKIKRVSQLAKDKKRAQEVE 132 (268)
Q Consensus 76 ~~~~~la~~~~~~-~~~~~A~~~~~~~l~~~p~~------~~~~~~l~~~~~~~~~~~~a~~~~ 132 (268)
.-+..+|.+|..- .++++|+.+|+++-+..... -..+...+......+++.+|+.+.
T Consensus 114 k~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iy 177 (288)
T KOG1586|consen 114 KHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIY 177 (288)
T ss_pred hhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466888888876 89999999999987764433 224555666666677888886653
No 223
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.89 E-value=5.6e-05 Score=63.51 Aligned_cols=119 Identities=15% Similarity=0.097 Sum_probs=99.8
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHH-HhcCCC--------ChHHHHHHHHHHHHcCChHHHHHHHHHHHh-h----
Q 024419 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQA-IKQDPS--------NPTLFSNRAAAFLHLVKLNKALADAETTIS-L---- 70 (268)
Q Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a-l~~~p~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-~---- 70 (268)
+.+.+++.++...+..|+|.+|.+.+... +...|. ...+|.++|.+++++|.|.-++..|.+|++ .
T Consensus 238 ~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL 317 (696)
T KOG2471|consen 238 DSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQL 317 (696)
T ss_pred CCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999987653 233333 335678999999999999999999999996 1
Q ss_pred ----CC---------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 024419 71 ----NP---------QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAK 123 (268)
Q Consensus 71 ----~p---------~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~ 123 (268)
.| ...+..++.|..+...|+.-.|.++|.++......+|..|.+++.+-....
T Consensus 318 ~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~ 383 (696)
T KOG2471|consen 318 RNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMAL 383 (696)
T ss_pred hccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 22 235789999999999999999999999999999999999999999876543
No 224
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.88 E-value=0.00052 Score=53.52 Aligned_cols=120 Identities=13% Similarity=0.054 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLH----LVKLNKALADAETTISLNPQWEKGYFRKG 82 (268)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la 82 (268)
.++.-....++.+..+.+-|....++..+++.+. .+..+|..+.. .+++..|.-.|+..-...|..+......+
T Consensus 137 lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~--tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~A 214 (299)
T KOG3081|consen 137 LEAAALNVQILLKMHRFDLAEKELKKMQQIDEDA--TLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQA 214 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH--HHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHH
Confidence 3445556677888889999999999999887543 34445554443 24688889999998887788888899999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHh
Q 024419 83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRA 128 (268)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a 128 (268)
.|+..+|+|++|...++.+|..+|++++.+.++-.+-...|.-.++
T Consensus 215 v~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~ 260 (299)
T KOG3081|consen 215 VCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEV 260 (299)
T ss_pred HHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHH
Confidence 9999999999999999999999999999999988887777766544
No 225
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.87 E-value=1.1e-05 Score=64.70 Aligned_cols=108 Identities=17% Similarity=0.165 Sum_probs=86.5
Q ss_pred HHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHH
Q 024419 51 FLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQE 130 (268)
Q Consensus 51 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~ 130 (268)
.+..|+++.|++.|..+|.++|.....|...|.++..+++...|+..+..+++++|+...-+...+.....++.|.+|..
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence 44578899999999999999999999999999999999999999999999999999999888888888889999998876
Q ss_pred HHhhhhhHHHhhhHHHHHHHhhhhcCch
Q 024419 131 VENIRSNVDMVQHLDEFKSEMSEKYGAE 158 (268)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (268)
.+.....++..........++....+..
T Consensus 204 dl~~a~kld~dE~~~a~lKeV~p~a~ki 231 (377)
T KOG1308|consen 204 DLALACKLDYDEANSATLKEVFPNAGKI 231 (377)
T ss_pred HHHHHHhccccHHHHHHHHHhccchhhh
Confidence 6543333444444444444444444433
No 226
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.86 E-value=0.007 Score=46.87 Aligned_cols=170 Identities=18% Similarity=0.094 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh------HHHHHHHHHHHHcCChHHHHHHHHHHHhh-----CCCCHH
Q 024419 8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP------TLFSNRAAAFLHLVKLNKALADAETTISL-----NPQWEK 76 (268)
Q Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~~~ 76 (268)
..+..-+..+...++|++|..++.+|.+-..++. .++-..|.....+..+.++...|+++..+ .|+-+.
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAA 111 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAA 111 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHH
Confidence 3445555666677899999999999997665553 34445677777889999999999999887 355444
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHH
Q 024419 77 GYFRKGCILEAMEQYDDALSAFQTALQYNPQS------AEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSE 150 (268)
Q Consensus 77 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 150 (268)
.-...+--.....+.++|+..|++++.+-... .+.+...+.++...+.+++|-.... +...... ...
T Consensus 112 maleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~l--Ke~~~~~-----~~~ 184 (308)
T KOG1585|consen 112 MALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFL--KEGVAAD-----KCD 184 (308)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHH--HhhhHHH-----HHh
Confidence 44455555567788999999999998775433 3455566667777777777643310 0000000 001
Q ss_pred hhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhh
Q 024419 151 MSEKYGAEECWKHVFSFVVETMETAVKSWHETSK 184 (268)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 184 (268)
.+..........-++++...+|..|.++++..-.
T Consensus 185 ~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~q 218 (308)
T KOG1585|consen 185 AYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQ 218 (308)
T ss_pred hcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhc
Confidence 1111122233333455667788888888887543
No 227
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.84 E-value=0.00075 Score=52.64 Aligned_cols=118 Identities=10% Similarity=0.064 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 024419 8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEA 87 (268)
Q Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 87 (268)
-....-|.++...|++++|.....+ ..+.++...--.|+.++.+.+-|....+++..++.+.. +.+||.++..
T Consensus 109 i~~l~aa~i~~~~~~~deAl~~~~~-----~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~t--LtQLA~awv~ 181 (299)
T KOG3081|consen 109 IDLLLAAIIYMHDGDFDEALKALHL-----GENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDAT--LTQLAQAWVK 181 (299)
T ss_pred HHHHHhhHHhhcCCChHHHHHHHhc-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHH--HHHHHHHHHH
Confidence 3455567788899999999988766 23456666667788899999999999999998876643 3445544443
Q ss_pred ----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419 88 ----MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE 132 (268)
Q Consensus 88 ----~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 132 (268)
.+++.+|.-.|+..-+..|..+....+.+.+...++++++|+.+.
T Consensus 182 la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL 230 (299)
T KOG3081|consen 182 LATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLL 230 (299)
T ss_pred HhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHH
Confidence 356889999999999988888999999999999999999998764
No 228
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.83 E-value=0.0035 Score=48.11 Aligned_cols=105 Identities=13% Similarity=0.096 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChH------HHHHHHHHHHHc-CChHHHHHHHHHHHhhCCCC-----
Q 024419 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPT------LFSNRAAAFLHL-VKLNKALADAETTISLNPQW----- 74 (268)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~~a~~~~~~-~~~~~A~~~~~~al~~~p~~----- 74 (268)
+-.-+..+...++..+.++|+.++++++++..+-++ .+..+|.+|... .++++||.+|+++-+.-...
T Consensus 73 aat~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ss 152 (288)
T KOG1586|consen 73 AATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSS 152 (288)
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhh
Confidence 333444455556677999999999999998765443 345789888775 89999999999998753321
Q ss_pred -HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH
Q 024419 75 -EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111 (268)
Q Consensus 75 -~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 111 (268)
-..++..|..-...++|.+|+..|+++....-+|.-.
T Consensus 153 ANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LL 190 (288)
T KOG1586|consen 153 ANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLL 190 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHH
Confidence 2456667777788999999999999998877766544
No 229
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.00035 Score=53.83 Aligned_cols=89 Identities=12% Similarity=0.140 Sum_probs=76.2
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhh--------CCC----------CHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 024419 41 PTLFSNRAAAFLHLVKLNKALADAETTISL--------NPQ----------WEKGYFRKGCILEAMEQYDDALSAFQTAL 102 (268)
Q Consensus 41 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~----------~~~~~~~la~~~~~~~~~~~A~~~~~~~l 102 (268)
+.++...|+-+++.|+|.+|...|+.|+.. .|. ....+.+.+.|+...|+|-+++++...+|
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 578889999999999999999999998743 343 34678899999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHHHHHHHhH
Q 024419 103 QYNPQSAEVSRKIKRVSQLAKDKKRAQ 129 (268)
Q Consensus 103 ~~~p~~~~~~~~l~~~~~~~~~~~~a~ 129 (268)
..+|.|..+++..+..+...-+..+|.
T Consensus 258 ~~~~~nvKA~frRakAhaa~Wn~~eA~ 284 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHAAVWNEAEAK 284 (329)
T ss_pred hcCCchHHHHHHHHHHHHhhcCHHHHH
Confidence 999999999999999877665555553
No 230
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.82 E-value=0.005 Score=50.81 Aligned_cols=226 Identities=15% Similarity=0.050 Sum_probs=136.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh--HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHH
Q 024419 11 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNP--TLFSNRAAAFLHLVKLNKALADAETTISLNPQW-EKGYFRKGCILEA 87 (268)
Q Consensus 11 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~ 87 (268)
...|.+.--.|+-..|..+-.++-++-..+. -++..-++.-.--|+++.|.+-|+-.+. +|.. .-.+..|-.--..
T Consensus 88 LStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr 166 (531)
T COG3898 88 LSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQR 166 (531)
T ss_pred HhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHh
Confidence 3445566667888888888888876654443 4455557778888999999999987765 4543 2223333334456
Q ss_pred ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHHH
Q 024419 88 MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSF 167 (268)
Q Consensus 88 ~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (268)
.|..+.|+.+-+++-.+.|.-+.++...-......|+|+.|+++............ ............-.....
T Consensus 167 ~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~------~~aeR~rAvLLtAkA~s~ 240 (531)
T COG3898 167 LGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEK------DVAERSRAVLLTAKAMSL 240 (531)
T ss_pred cccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhch------hhHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999998888888888999999877432221111110 000001111111111122
Q ss_pred HHHHHHHHHHhhhhhhhchhH----------HHHHhhhhhhhHhhhhHHhcCCccccCccchhHHHHHHH--HHHH---H
Q 024419 168 VVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLR--QYAD---D 232 (268)
Q Consensus 168 ~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~a~---~ 232 (268)
...+...|...-..++++.|+ .++..|+..++-+..+.+-..+| ++.....|...+ +-++ +
T Consensus 241 ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~eP----HP~ia~lY~~ar~gdta~dRlk 316 (531)
T COG3898 241 LDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEP----HPDIALLYVRARSGDTALDRLK 316 (531)
T ss_pred hcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCC----ChHHHHHHHHhcCCCcHHHHHH
Confidence 233344455555556666665 46677777777777777777666 233444444433 1133 3
Q ss_pred HHHHHhhhhCCCCccc
Q 024419 233 SFSSAACLVAPKSIIS 248 (268)
Q Consensus 233 ~~~ka~~~~~p~~~~~ 248 (268)
..++.. .+.|+|...
T Consensus 317 Ra~~L~-slk~nnaes 331 (531)
T COG3898 317 RAKKLE-SLKPNNAES 331 (531)
T ss_pred HHHHHH-hcCccchHH
Confidence 333334 556666543
No 231
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.74 E-value=0.0003 Score=60.57 Aligned_cols=104 Identities=20% Similarity=0.214 Sum_probs=93.1
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHH
Q 024419 17 FFKAGNYLKAAALYTQAIKQDPSNP-TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDAL 95 (268)
Q Consensus 17 ~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~ 95 (268)
....|+...|+.++.+|+...|... ....++|.++.+-|-.-.|-..+.+++.++...+-.++.+|..+..+.+.+.|+
T Consensus 617 wr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHH
Confidence 3467999999999999999999643 468899999999999999999999999999888889999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHH
Q 024419 96 SAFQTALQYNPQSAEVSRKIKRVSQ 120 (268)
Q Consensus 96 ~~~~~~l~~~p~~~~~~~~l~~~~~ 120 (268)
+.|+.++.++|+++.+-..|..+..
T Consensus 697 ~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 697 EAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHhcCCCChhhHHHHHHHHH
Confidence 9999999999999998777766544
No 232
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=97.73 E-value=0.00073 Score=57.18 Aligned_cols=95 Identities=14% Similarity=0.133 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHH
Q 024419 24 LKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQ-YDDALSAFQTAL 102 (268)
Q Consensus 24 ~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~~l 102 (268)
..-...|++|+...+.++..|.....-..+.+.+.+--..|.+++..+|++++.|..-|.=.+.-+. ++.|...|.++|
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 3456789999999999999999988888888889999999999999999999999999877766665 999999999999
Q ss_pred hhCCCCHHHHHHHHHH
Q 024419 103 QYNPQSAEVSRKIKRV 118 (268)
Q Consensus 103 ~~~p~~~~~~~~l~~~ 118 (268)
+.+|+++..|...-+.
T Consensus 168 R~npdsp~Lw~eyfrm 183 (568)
T KOG2396|consen 168 RFNPDSPKLWKEYFRM 183 (568)
T ss_pred hcCCCChHHHHHHHHH
Confidence 9999999887655443
No 233
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.73 E-value=0.002 Score=60.79 Aligned_cols=119 Identities=11% Similarity=-0.013 Sum_probs=72.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHH
Q 024419 10 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ--WEKGYFRKGCILEA 87 (268)
Q Consensus 10 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~ 87 (268)
+..+..+|...+.+++|.++++..++...+...+|...|..++..++-+.|...+.+|++--|. +....-..|.+-++
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 3444555556666666666666666666556666666666666666666666666666666665 55555566666666
Q ss_pred ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHh
Q 024419 88 MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRA 128 (268)
Q Consensus 88 ~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a 128 (268)
.|+.+.+...|+-.+.-+|...+.|.-+...-...+..+.+
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~v 1653 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYV 1653 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHH
Confidence 66666666666666666666666666555544444433333
No 234
>PRK10941 hypothetical protein; Provisional
Probab=97.73 E-value=0.0008 Score=53.70 Aligned_cols=77 Identities=17% Similarity=0.204 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024419 42 TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRV 118 (268)
Q Consensus 42 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 118 (268)
..+.++=.+|.+.++++.|+.+.+..+.++|+++.-+..+|.+|.++|.+..|+..++..++..|+++.+..-..++
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 55667888999999999999999999999999999999999999999999999999999999999999876654444
No 235
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.72 E-value=0.00083 Score=58.34 Aligned_cols=106 Identities=14% Similarity=0.129 Sum_probs=88.7
Q ss_pred cCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHccCHHHHH
Q 024419 20 AGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW----EKGYFRKGCILEAMEQYDDAL 95 (268)
Q Consensus 20 ~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~ 95 (268)
..+.+.|.+.+....+..|+++-.++..|.++...|+.++|++.|++++...... .-.++.+|.++..+.+|++|.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 4577899999999999999999999999999999999999999999998644332 356889999999999999999
Q ss_pred HHHHHHHhhCCCCHH-HHHHHHHHHHHHHHH
Q 024419 96 SAFQTALQYNPQSAE-VSRKIKRVSQLAKDK 125 (268)
Q Consensus 96 ~~~~~~l~~~p~~~~-~~~~l~~~~~~~~~~ 125 (268)
.+|.+..+.+.-... ..+..|-++...++.
T Consensus 326 ~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~ 356 (468)
T PF10300_consen 326 EYFLRLLKESKWSKAFYAYLAAACLLMLGRE 356 (468)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhhccc
Confidence 999999997665444 344555666666666
No 236
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=97.71 E-value=0.00081 Score=45.35 Aligned_cols=92 Identities=21% Similarity=0.345 Sum_probs=60.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCh---HHHHHHHHHHHHcCC-----------hHHHHHHHHHHHhhCCCCHHHH
Q 024419 13 KGNEFFKAGNYLKAAALYTQAIKQDPSNP---TLFSNRAAAFLHLVK-----------LNKALADAETTISLNPQWEKGY 78 (268)
Q Consensus 13 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~a~~~~~~~~-----------~~~A~~~~~~al~~~p~~~~~~ 78 (268)
++..++..|++-+|+++.+..+...+++. ..+..-|.++..+.. .-.++++|.++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 57788999999999999999999988876 444455666654432 1245556666666666665555
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhh
Q 024419 79 FRKGCILEAMEQYDDALSAFQTALQY 104 (268)
Q Consensus 79 ~~la~~~~~~~~~~~A~~~~~~~l~~ 104 (268)
+.+|.-+.....|+++..-.+++|.+
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 55555555555555555555555543
No 237
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=97.71 E-value=0.00027 Score=56.21 Aligned_cols=75 Identities=21% Similarity=0.161 Sum_probs=56.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024419 44 FSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRV 118 (268)
Q Consensus 44 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 118 (268)
-.+.|.-..+.|+.++|...|+.|+.++|+++.++..+|......++.-+|-.+|-++|.++|.|.+++.+..+.
T Consensus 119 Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 119 ALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 334455556778888888888888888888888888888887777888888888888888888887776665543
No 238
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.68 E-value=0.00051 Score=40.04 Aligned_cols=43 Identities=9% Similarity=0.126 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024419 76 KGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRV 118 (268)
Q Consensus 76 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 118 (268)
+.++.+|..+.++|+|++|..+.+.+|+++|+|..+......+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 3567778888888888888888888888888887776544444
No 239
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.68 E-value=0.00051 Score=49.74 Aligned_cols=63 Identities=21% Similarity=0.209 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 024419 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS 69 (268)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 69 (268)
..++..++..+...|++++|+..+++++..+|.+..++..+-.+|..+|+...|+..|+++..
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 456677888899999999999999999999999999999999999999999999999988854
No 240
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.65 E-value=0.00059 Score=59.24 Aligned_cols=101 Identities=12% Similarity=0.016 Sum_probs=82.2
Q ss_pred hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-HHHH
Q 024419 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPS----NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW-EKGY 78 (268)
Q Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~ 78 (268)
|..+-.++..|..+...|+.++|++.|++++..... ..-.++.+|+|+..+++|++|..+|.+.++.+.-. .-..
T Consensus 264 P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~ 343 (468)
T PF10300_consen 264 PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYA 343 (468)
T ss_pred CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHH
Confidence 677778899999999999999999999998853322 24578899999999999999999999999976543 3345
Q ss_pred HHHHHHHHHccCH-------HHHHHHHHHHHhh
Q 024419 79 FRKGCILEAMEQY-------DDALSAFQTALQY 104 (268)
Q Consensus 79 ~~la~~~~~~~~~-------~~A~~~~~~~l~~ 104 (268)
+..|.|+...++. ++|.+.|.++-.+
T Consensus 344 Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 344 YLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 5668999999999 7777777776544
No 241
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.65 E-value=0.00011 Score=38.27 Aligned_cols=31 Identities=23% Similarity=0.447 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 024419 77 GYFRKGCILEAMEQYDDALSAFQTALQYNPQ 107 (268)
Q Consensus 77 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~ 107 (268)
+++.+|.++...|++++|+..|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3444555555555555555555555555444
No 242
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.64 E-value=0.0069 Score=57.44 Aligned_cols=129 Identities=12% Similarity=-0.025 Sum_probs=97.8
Q ss_pred CchHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCh----HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHH
Q 024419 2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ-DPSNP----TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEK 76 (268)
Q Consensus 2 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~ 76 (268)
+.|..+-.|...-....+.++.++|.+..++||.. ++... .+|..+=+....-|.-+.-.+.|++|.+.. +-..
T Consensus 1453 ssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d~~~ 1531 (1710)
T KOG1070|consen 1453 SSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-DAYT 1531 (1710)
T ss_pred cCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-chHH
Confidence 45677777888877888888999999999999874 44433 333333333344456667777888888775 3346
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHH
Q 024419 77 GYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV 131 (268)
Q Consensus 77 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 131 (268)
+|..|..+|...+++++|.+.|+..++.......+|...+..+...++-+.|..+
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~l 1586 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAAREL 1586 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHH
Confidence 7888999999999999999999999999888889999999988877776666554
No 243
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.63 E-value=0.00012 Score=38.07 Aligned_cols=31 Identities=16% Similarity=0.205 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 024419 43 LFSNRAAAFLHLVKLNKALADAETTISLNPQ 73 (268)
Q Consensus 43 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 73 (268)
+++.+|.|+...|++++|+..|++++...|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4566666666666666666666666666665
No 244
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.63 E-value=0.0017 Score=52.58 Aligned_cols=106 Identities=15% Similarity=0.117 Sum_probs=88.0
Q ss_pred hHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH---HHHHHH
Q 024419 6 EEMSLKDKGNEFFK-AGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWE---KGYFRK 81 (268)
Q Consensus 6 ~~~~~~~~g~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l 81 (268)
..+.+...|..-+. .++.+.|..+|+.+++..|.+..+|......+...++.+.|...|++++..-|... ..|...
T Consensus 34 ~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~ 113 (280)
T PF05843_consen 34 TYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKF 113 (280)
T ss_dssp -THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 45677788888777 67777799999999999999999999999999999999999999999999877654 678888
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCHHH
Q 024419 82 GCILEAMEQYDDALSAFQTALQYNPQSAEV 111 (268)
Q Consensus 82 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 111 (268)
...-...|+.+...+..+++.+..|+....
T Consensus 114 i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~ 143 (280)
T PF05843_consen 114 IEFESKYGDLESVRKVEKRAEELFPEDNSL 143 (280)
T ss_dssp HHHHHHHS-HHHHHHHHHHHHHHTTTS-HH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHhhhhhHH
Confidence 888888999999999999999999985444
No 245
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=97.62 E-value=0.00033 Score=55.74 Aligned_cols=80 Identities=15% Similarity=0.166 Sum_probs=72.1
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024419 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI 84 (268)
Q Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 84 (268)
.++......|......|+.++|...|..|+.++|+++.++..+|......++.-+|-.+|-+|+.++|.|.+++.+.+..
T Consensus 114 kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 114 KEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 34555667777888999999999999999999999999999999999999999999999999999999999998887654
No 246
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.61 E-value=0.0017 Score=48.45 Aligned_cols=95 Identities=24% Similarity=0.190 Sum_probs=49.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-HHHHHHHHHHH
Q 024419 10 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLHLVKLNKALADAETTISLNPQW-EKGYFRKGCIL 85 (268)
Q Consensus 10 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~ 85 (268)
...++..+...+++++|+..++.++....+. .-+-.++|.+...+|++++|+..+..... +.+ +..-...|.++
T Consensus 92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrGDil 169 (207)
T COG2976 92 ALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRGDIL 169 (207)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhhhHH
Confidence 3455555666666666666666655432221 23444556666666666666555433321 111 12233446666
Q ss_pred HHccCHHHHHHHHHHHHhhCC
Q 024419 86 EAMEQYDDALSAFQTALQYNP 106 (268)
Q Consensus 86 ~~~~~~~~A~~~~~~~l~~~p 106 (268)
...|+-++|+..|+++++.++
T Consensus 170 l~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 170 LAKGDKQEARAAYEKALESDA 190 (207)
T ss_pred HHcCchHHHHHHHHHHHHccC
Confidence 666666666666666665553
No 247
>PRK10941 hypothetical protein; Provisional
Probab=97.56 E-value=0.0019 Score=51.62 Aligned_cols=75 Identities=15% Similarity=0.118 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024419 9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC 83 (268)
Q Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 83 (268)
.+.++=..+...++++.|+.+.+..+.++|+++.-+--+|.+|.++|.+..|...++..++..|+.+.+-.-...
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~q 257 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence 445666788999999999999999999999999999999999999999999999999999999999877654443
No 248
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.55 E-value=9.1e-05 Score=62.17 Aligned_cols=86 Identities=16% Similarity=0.122 Sum_probs=78.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 024419 46 NRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDK 125 (268)
Q Consensus 46 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~ 125 (268)
.-+.-.+.-+.++.|+..|.++|+++|+++..+-+.+.++.+.++|..|+..+.++++++|....+|..-|.....++.+
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence 44666778899999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred HHhHHH
Q 024419 126 KRAQEV 131 (268)
Q Consensus 126 ~~a~~~ 131 (268)
.+|...
T Consensus 89 ~~A~~~ 94 (476)
T KOG0376|consen 89 KKALLD 94 (476)
T ss_pred HHHHHH
Confidence 888654
No 249
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.55 E-value=0.00019 Score=38.31 Aligned_cols=23 Identities=17% Similarity=0.164 Sum_probs=10.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHH
Q 024419 44 FSNRAAAFLHLVKLNKALADAET 66 (268)
Q Consensus 44 ~~~~a~~~~~~~~~~~A~~~~~~ 66 (268)
+.++|.+|..+|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444444444444444444444
No 250
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.53 E-value=0.0043 Score=45.01 Aligned_cols=110 Identities=13% Similarity=-0.028 Sum_probs=85.8
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024419 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI 84 (268)
Q Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 84 (268)
.-...+......-...++.+++...+.-.--+.|+.+.+-..-|+.+...|+|.+|+..++.+..-.|..+.+--.++.|
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C 87 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC 87 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 33567788888888889999999999999999999999999999999999999999999999988889898888889999
Q ss_pred HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419 85 LEAMEQYDDALSAFQTALQYNPQSAEVSRKIK 116 (268)
Q Consensus 85 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~ 116 (268)
+..+|+.+= ..+-..+++..| ++.+...+.
T Consensus 88 L~~~~D~~W-r~~A~evle~~~-d~~a~~Lv~ 117 (160)
T PF09613_consen 88 LYALGDPSW-RRYADEVLESGA-DPDARALVR 117 (160)
T ss_pred HHHcCChHH-HHHHHHHHhcCC-ChHHHHHHH
Confidence 988888641 122333444433 444444333
No 251
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.51 E-value=0.0029 Score=57.15 Aligned_cols=118 Identities=15% Similarity=0.045 Sum_probs=95.7
Q ss_pred hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024419 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC 83 (268)
Q Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 83 (268)
|...-+....|.++++.|++++|..+++..-...+++...+-.+-.||..++++++|..+|++++..+|. -+....+=.
T Consensus 40 Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFm 118 (932)
T KOG2053|consen 40 PNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFM 118 (932)
T ss_pred CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHH
Confidence 5556677788999999999999998888877778889999999999999999999999999999999999 888888889
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCHHH-HHHHHHHHHHH
Q 024419 84 ILEAMEQYDDALSAFQTALQYNPQSAEV-SRKIKRVSQLA 122 (268)
Q Consensus 84 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~-~~~l~~~~~~~ 122 (268)
+|.+.++|.+--+.--+.-+..|+++.. |..++-+....
T Consensus 119 ayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~ 158 (932)
T KOG2053|consen 119 AYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSI 158 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhc
Confidence 9999988877555555555577887654 44444444333
No 252
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.47 E-value=0.0016 Score=42.80 Aligned_cols=65 Identities=15% Similarity=0.235 Sum_probs=41.1
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHHHH
Q 024419 60 ALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS--AEVSRKIKRVSQLAKD 124 (268)
Q Consensus 60 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~--~~~~~~l~~~~~~~~~ 124 (268)
.+..+++.+..+|++..+.+.+|..+...|++++|++.+-.+++.+|+. ..+...+-.+...+|.
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 3556667777777777777777777777777777777777777777654 4555555555555543
No 253
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.43 E-value=0.0028 Score=41.63 Aligned_cols=66 Identities=17% Similarity=0.109 Sum_probs=50.9
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHccCH
Q 024419 26 AAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW--EKGYFRKGCILEAMEQY 91 (268)
Q Consensus 26 A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~ 91 (268)
.+..+++.++.+|++..+.+.+|.++...|++++|++.+-.+++.+|++ ..+.-.+-.++...|.-
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 4677889999999999999999999999999999999999999999876 44555555555555543
No 254
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.42 E-value=0.0003 Score=37.53 Aligned_cols=28 Identities=21% Similarity=0.364 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 024419 77 GYFRKGCILEAMEQYDDALSAFQTALQY 104 (268)
Q Consensus 77 ~~~~la~~~~~~~~~~~A~~~~~~~l~~ 104 (268)
++..+|.+|...|+|++|+++|+++|.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4788999999999999999999996644
No 255
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.41 E-value=0.019 Score=47.52 Aligned_cols=93 Identities=16% Similarity=0.139 Sum_probs=75.2
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHcCC------------hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHH
Q 024419 27 AALYTQAIKQDPSNPTLFSNRAAAFLHLVK------------LNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDA 94 (268)
Q Consensus 27 ~~~~~~al~~~p~~~~~~~~~a~~~~~~~~------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A 94 (268)
...+++.+..+|.+..+|..+....-..-. .+.-+..+++||+.+|++...+..+=.+..+..+.+.-
T Consensus 5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l 84 (321)
T PF08424_consen 5 TAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKL 84 (321)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 346788888999999999988776555432 45668889999999999988888887888888888888
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHH
Q 024419 95 LSAFQTALQYNPQSAEVSRKIKRVS 119 (268)
Q Consensus 95 ~~~~~~~l~~~p~~~~~~~~l~~~~ 119 (268)
.+-+++++..+|+++..|...-...
T Consensus 85 ~~~we~~l~~~~~~~~LW~~yL~~~ 109 (321)
T PF08424_consen 85 AKKWEELLFKNPGSPELWREYLDFR 109 (321)
T ss_pred HHHHHHHHHHCCCChHHHHHHHHHH
Confidence 8999999999999999887665543
No 256
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.40 E-value=0.011 Score=53.52 Aligned_cols=187 Identities=13% Similarity=0.129 Sum_probs=121.8
Q ss_pred HcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHH--------HHHh---hCCCCHHHHHHHHHHHHH
Q 024419 19 KAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAE--------TTIS---LNPQWEKGYFRKGCILEA 87 (268)
Q Consensus 19 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~--------~al~---~~p~~~~~~~~la~~~~~ 87 (268)
..|+.+.|..-.+-. ++-.+|-++|....+.++.+-|.-++- +|+. .+|++.+ ...|.+-..
T Consensus 740 tiG~MD~AfksI~~I-----kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~e--akvAvLAie 812 (1416)
T KOG3617|consen 740 TIGSMDAAFKSIQFI-----KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDE--AKVAVLAIE 812 (1416)
T ss_pred EeccHHHHHHHHHHH-----hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchh--hHHHHHHHH
Confidence 357777776654332 245789999999988888877765542 2222 2444333 346778889
Q ss_pred ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHHH
Q 024419 88 MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSF 167 (268)
Q Consensus 88 ~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (268)
+|..++|...|.+.- -+-.+..+|+.+|.|++|.++.+....+.. ...++.......
T Consensus 813 LgMlEeA~~lYr~ck--------R~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---------------r~Tyy~yA~~Le 869 (1416)
T KOG3617|consen 813 LGMLEEALILYRQCK--------RYDLLNKLYQSQGMWSEAFEIAETKDRIHL---------------RNTYYNYAKYLE 869 (1416)
T ss_pred HhhHHHHHHHHHHHH--------HHHHHHHHHHhcccHHHHHHHHhhccceeh---------------hhhHHHHHHHHH
Confidence 999999999999974 345678899999999999777432222211 122222223344
Q ss_pred HHHHHHHHHHhhhhhhhchhHHHHHhhhhhhhHhhhhHHhcCCccccCccchhHHHHHHHHH--HHHHHHHHh
Q 024419 168 VVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQY--ADDSFSSAA 238 (268)
Q Consensus 168 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--a~~~~~ka~ 238 (268)
..++++.|+++|+++-.-...+..++.++..+++.|-+-.. ++... .-.|+++...|.. |+..|.+|-
T Consensus 870 ar~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~-d~~L~--~WWgqYlES~GemdaAl~~Y~~A~ 939 (1416)
T KOG3617|consen 870 ARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKR-DESLY--SWWGQYLESVGEMDAALSFYSSAK 939 (1416)
T ss_pred hhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhcc-chHHH--HHHHHHHhcccchHHHHHHHHHhh
Confidence 56778889999998866555677788888877776643322 33221 1156777777755 777777776
No 257
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.38 E-value=0.02 Score=39.20 Aligned_cols=95 Identities=20% Similarity=0.351 Sum_probs=72.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------------ChHHHHHHHHHHHHcCChHHHHHHHHHHHh-------h
Q 024419 10 LKDKGNEFFKAGNYLKAAALYTQAIKQDPS------------NPTLFSNRAAAFLHLVKLNKALADAETTIS-------L 70 (268)
Q Consensus 10 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-------~ 70 (268)
....|...+..|-|++|..-+++|....-+ ++.++-.++.++..+|+|++++..-.++|. +
T Consensus 12 aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL 91 (144)
T PF12968_consen 12 ALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGEL 91 (144)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccc
Confidence 345566677889999999999999986322 245677788899999999999888888875 3
Q ss_pred CCC----CHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 024419 71 NPQ----WEKGYFRKGCILEAMEQYDDALSAFQTALQY 104 (268)
Q Consensus 71 ~p~----~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 104 (268)
+.+ ++.+.+..|..+..+|+.++|+..|+.+-+.
T Consensus 92 ~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 92 HQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 544 3566788999999999999999999988653
No 258
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.38 E-value=0.00037 Score=35.44 Aligned_cols=30 Identities=30% Similarity=0.444 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 024419 43 LFSNRAAAFLHLVKLNKALADAETTISLNP 72 (268)
Q Consensus 43 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p 72 (268)
++..+|.++..+++++.|+..++++++++|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 344444444444444444444444444444
No 259
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.33 E-value=0.12 Score=47.13 Aligned_cols=99 Identities=20% Similarity=0.178 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHH----------HhhCCC----------CHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 024419 42 TLFSNRAAAFLHLVKLNKALADAETT----------ISLNPQ----------WEKGYFRKGCILEAMEQYDDALSAFQTA 101 (268)
Q Consensus 42 ~~~~~~a~~~~~~~~~~~A~~~~~~a----------l~~~p~----------~~~~~~~la~~~~~~~~~~~A~~~~~~~ 101 (268)
..|++.|.-+...++.+.|+++|+++ |.-+|. +...|..+|.-+...|+.+.|+.+|..+
T Consensus 859 ~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A 938 (1416)
T KOG3617|consen 859 NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA 938 (1416)
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 56888888888999999999999875 344553 4567777898888999999999999886
Q ss_pred Hhh---------------------CCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHH
Q 024419 102 LQY---------------------NPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDM 140 (268)
Q Consensus 102 l~~---------------------~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 140 (268)
-.. ...+..+-+.+++-|...|+..+|..+....+.+.+
T Consensus 939 ~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsn 998 (1416)
T KOG3617|consen 939 KDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSN 998 (1416)
T ss_pred hhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 433 344567888899999999999999877654444333
No 260
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=97.26 E-value=0.018 Score=40.35 Aligned_cols=80 Identities=11% Similarity=0.139 Sum_probs=66.0
Q ss_pred CChHHHHHHHHHHHHcC---ChHHHHHHHHHHHh-hCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHH
Q 024419 39 SNPTLFSNRAAAFLHLV---KLNKALADAETTIS-LNPQW-EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSR 113 (268)
Q Consensus 39 ~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~-~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 113 (268)
-+....+++++++.... +..+.+..++..++ -+|.. -+..+.+|..+.+.++|+.++.+....++.+|+|..+..
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 35678899999998865 46688999999996 55653 567888999999999999999999999999999988865
Q ss_pred HHHHH
Q 024419 114 KIKRV 118 (268)
Q Consensus 114 ~l~~~ 118 (268)
.-..+
T Consensus 110 Lk~~i 114 (149)
T KOG3364|consen 110 LKETI 114 (149)
T ss_pred HHHHH
Confidence 44444
No 261
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.26 E-value=0.00062 Score=34.56 Aligned_cols=33 Identities=24% Similarity=0.553 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 024419 76 KGYFRKGCILEAMEQYDDALSAFQTALQYNPQS 108 (268)
Q Consensus 76 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~ 108 (268)
.++..+|.++..++++++|+..++++++++|++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 578899999999999999999999999998863
No 262
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=97.26 E-value=0.0024 Score=53.01 Aligned_cols=93 Identities=18% Similarity=0.342 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--------C----------hHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 024419 9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPS--------N----------PTLFSNRAAAFLHLVKLNKALADAETTISL 70 (268)
Q Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--------~----------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 70 (268)
+...-|...+.+++|..|+.-|..+|++..+ . ..+--.+..||+++++.+-|+.+..+.|-+
T Consensus 178 vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~l 257 (569)
T PF15015_consen 178 VALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINL 257 (569)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhc
Confidence 4455677889999999999999999987321 1 123346899999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 024419 71 NPQWEKGYFRKGCILEAMEQYDDALSAFQTA 101 (268)
Q Consensus 71 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 101 (268)
||.+...+...|.|+..+.+|.+|...+--+
T Consensus 258 nP~~frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 258 NPSYFRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987655444
No 263
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.25 E-value=0.0024 Score=37.22 Aligned_cols=40 Identities=15% Similarity=0.114 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 024419 42 TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK 81 (268)
Q Consensus 42 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 81 (268)
+.++.+|..++++|+|++|..+.+.+|+++|+|..+....
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 3567778888888888888888888888888887665433
No 264
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.23 E-value=0.031 Score=45.46 Aligned_cols=129 Identities=12% Similarity=0.043 Sum_probs=96.5
Q ss_pred hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH
Q 024419 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ-DPSN---PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYF 79 (268)
Q Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 79 (268)
|.+.-++.---..++.+|+...-...+++.+-. +|+- ..+.-.++.++...|-|++|.+..++++++||.+..+..
T Consensus 134 PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~H 213 (491)
T KOG2610|consen 134 PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASH 213 (491)
T ss_pred chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHH
Confidence 455555555566788899999999999999877 6655 455556788999999999999999999999999999999
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHHHHHHHhHHHH
Q 024419 80 RKGCILEAMEQYDDALSAFQTALQYNPQS----AEVSRKIKRVSQLAKDKKRAQEVE 132 (268)
Q Consensus 80 ~la~~~~~~~~~~~A~~~~~~~l~~~p~~----~~~~~~l~~~~~~~~~~~~a~~~~ 132 (268)
.++.++...+++.++.+...+.-..=... .--|-..+..+...+.++.|.++.
T Consensus 214 a~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 214 AKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred HHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999999999999998887743221100 111223344444556777776664
No 265
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.16 E-value=0.029 Score=46.85 Aligned_cols=120 Identities=16% Similarity=0.173 Sum_probs=98.4
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----ChHHHHHHHHHHHHcCChHHHHHHHHHHHhh--C-C---
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPS----NPTLFSNRAAAFLHLVKLNKALADAETTISL--N-P--- 72 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~-p--- 72 (268)
+...+..+...+....+.|+++.|...+.++...++. .+.+.+..+......|+..+|+..++..+.. . +
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 3456778999999999999999999999999987632 5688888999999999999999999888871 1 1
Q ss_pred ----------------------C------CHHHHHHHHHHHHHc------cCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024419 73 ----------------------Q------WEKGYFRKGCILEAM------EQYDDALSAFQTALQYNPQSAEVSRKIKRV 118 (268)
Q Consensus 73 ----------------------~------~~~~~~~la~~~~~~------~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 118 (268)
. ...++..+|.-.... +..++++..|..+++++|+...+|...|..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 0 135666677666666 888999999999999999999999998888
Q ss_pred HHHH
Q 024419 119 SQLA 122 (268)
Q Consensus 119 ~~~~ 122 (268)
+...
T Consensus 302 ~~~~ 305 (352)
T PF02259_consen 302 NDKL 305 (352)
T ss_pred HHHH
Confidence 6544
No 266
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.15 E-value=0.00085 Score=51.20 Aligned_cols=57 Identities=23% Similarity=0.233 Sum_probs=31.1
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 024419 18 FKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW 74 (268)
Q Consensus 18 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 74 (268)
...++.+.|.+.|.+++.+-|.....|+.+|....+.|+++.|...|++.++++|.+
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 344555555555555555555555555555555555555555555555555555543
No 267
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=97.15 E-value=0.0012 Score=52.73 Aligned_cols=89 Identities=12% Similarity=0.092 Sum_probs=77.0
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH-HHHHHHHccCHHHHHHHHHHHHhhCCC
Q 024419 29 LYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFR-KGCILEAMEQYDDALSAFQTALQYNPQ 107 (268)
Q Consensus 29 ~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~~~~~~A~~~~~~~l~~~p~ 107 (268)
.|.++....|+++..|...+.-..+.+-+.+--..|.++++.+|.|++.|.. .+.-+...++++.+...|.+++..+|+
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 3455566678999999999888888899999999999999999999999987 456678889999999999999999999
Q ss_pred CHHHHHHHHH
Q 024419 108 SAEVSRKIKR 117 (268)
Q Consensus 108 ~~~~~~~l~~ 117 (268)
+|.+|...-.
T Consensus 175 ~p~iw~eyfr 184 (435)
T COG5191 175 SPRIWIEYFR 184 (435)
T ss_pred CchHHHHHHH
Confidence 9998876544
No 268
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.11 E-value=0.016 Score=49.55 Aligned_cols=57 Identities=19% Similarity=0.153 Sum_probs=31.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHcCChHHHHHHHHHH
Q 024419 11 KDKGNEFFKAGNYLKAAALYTQAIKQDPS--NPTLFSNRAAAFLHLVKLNKALADAETT 67 (268)
Q Consensus 11 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~a 67 (268)
..+|.++.+.|+.++|++.++..++..|. +..++.++..|+..++.|.++...+.+.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 34555555555555555555555555443 2345555555555555555555555553
No 269
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.018 Score=45.90 Aligned_cols=131 Identities=10% Similarity=0.041 Sum_probs=81.7
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024419 41 PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQ 120 (268)
Q Consensus 41 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 120 (268)
...-+.-+.-....|++.+|...+..++...|++..+...++.|+...|+.+.|...+... |.+...-...+ +..
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~l----P~~~~~~~~~~-l~a 208 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAAL----PLQAQDKAAHG-LQA 208 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhC----cccchhhHHHH-HHH
Confidence 3445556777888999999999999999999999999999999999999999987766553 44322222222 111
Q ss_pred HHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCc--hhhhHHHHHHHHHHHHHHHHhhhhhhhch
Q 024419 121 LAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGA--EECWKHVFSFVVETMETAVKSWHETSKVD 186 (268)
Q Consensus 121 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 186 (268)
.+....+|...- ....+...+..+..+ .....+..+...++.+.|++++-..+..+
T Consensus 209 ~i~ll~qaa~~~----------~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 209 QIELLEQAAATP----------EIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred HHHHHHHHhcCC----------CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 222223332220 011112222222222 23344455666788888888877666554
No 270
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.08 E-value=0.16 Score=43.55 Aligned_cols=131 Identities=13% Similarity=0.107 Sum_probs=105.0
Q ss_pred CchHhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHH-HcCChHHHHHHHHHHHhhC---C
Q 024419 2 AAEAEEMSLKDKGNEFFKAG--NYLKAAALYTQAIKQDPSN---PTLFSNRAAAFL-HLVKLNKALADAETTISLN---P 72 (268)
Q Consensus 2 ~~~~~~~~~~~~g~~~~~~~--~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~-~~~~~~~A~~~~~~al~~~---p 72 (268)
.+..=+.++..+|..+...| +...+|.+.+-.+...|.+ +..+..+|.+++ -..+.+.|..+++++..+- |
T Consensus 2 ~qdAva~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip 81 (629)
T KOG2300|consen 2 EQDAVAEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIP 81 (629)
T ss_pred chhHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccc
Confidence 34455778899999999999 9999999999999988865 466777887654 5789999999999998764 4
Q ss_pred CC----HHHHHHHHHHHHHcc-CHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHHHHHHHhHHHH
Q 024419 73 QW----EKGYFRKGCILEAME-QYDDALSAFQTALQYNPQSAE----VSRKIKRVSQLAKDKKRAQEVE 132 (268)
Q Consensus 73 ~~----~~~~~~la~~~~~~~-~~~~A~~~~~~~l~~~p~~~~----~~~~l~~~~~~~~~~~~a~~~~ 132 (268)
.+ ..+.-.++.+|.... .+..|...+++++++..+++. ...+|+++.....++..|.+..
T Consensus 82 ~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elL 150 (629)
T KOG2300|consen 82 SFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELL 150 (629)
T ss_pred cHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHH
Confidence 43 345566888888877 788899999999999887764 5677888888888888887763
No 271
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.04 E-value=0.01 Score=52.05 Aligned_cols=96 Identities=17% Similarity=0.196 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419 9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN------PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (268)
Q Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 82 (268)
.+.+.|..+++.++|..+++.|...+..-|.+ +....+++.||..+.+.+.|.+.++.|-+.+|.++-..+..-
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~ 435 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML 435 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 45677888999999999999999999987765 355667899999999999999999999999999998888888
Q ss_pred HHHHHccCHHHHHHHHHHHHhh
Q 024419 83 CILEAMEQYDDALSAFQTALQY 104 (268)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~~l~~ 104 (268)
.+....+.-++|+.+..+....
T Consensus 436 ~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 436 QSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHhcchHHHHHHHHHHHhh
Confidence 8888999999999888887655
No 272
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.97 E-value=0.031 Score=39.97 Aligned_cols=86 Identities=12% Similarity=-0.077 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024419 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILE 86 (268)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 86 (268)
...+......-...++..++...+...--+.|+.+.+...-|..+...|+|.+|+..++....-.+..+.+.-.++.|+.
T Consensus 10 v~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~ 89 (153)
T TIGR02561 10 LGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLN 89 (153)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence 45566666666778888888888888888889998888888999999999999999998888888888877788888888
Q ss_pred HccCHH
Q 024419 87 AMEQYD 92 (268)
Q Consensus 87 ~~~~~~ 92 (268)
.+|+.+
T Consensus 90 al~Dp~ 95 (153)
T TIGR02561 90 AKGDAE 95 (153)
T ss_pred hcCChH
Confidence 888753
No 273
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.90 E-value=0.14 Score=39.96 Aligned_cols=65 Identities=15% Similarity=0.200 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 024419 41 PTLFSNRAAAFLHLVKLNKALADAETTISLNPQW------EKGYFRKGCILEAMEQYDDALSAFQTALQYN 105 (268)
Q Consensus 41 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~ 105 (268)
+..+..-+.+|....+|++|..++.++++-..+| +.++-+.|.+...+..+.++...|+++..+.
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4566667888999999999999999999654433 4667778888888999999999999998774
No 274
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.89 E-value=0.02 Score=44.30 Aligned_cols=88 Identities=17% Similarity=0.082 Sum_probs=67.2
Q ss_pred HcCCHHHHHHHHHHHHhc----C-CC--ChHHHHHHHHHHHHcCChH-------HHHHHHHHHHhhCCC------CHHHH
Q 024419 19 KAGNYLKAAALYTQAIKQ----D-PS--NPTLFSNRAAAFLHLVKLN-------KALADAETTISLNPQ------WEKGY 78 (268)
Q Consensus 19 ~~~~~~~A~~~~~~al~~----~-p~--~~~~~~~~a~~~~~~~~~~-------~A~~~~~~al~~~p~------~~~~~ 78 (268)
....+++|++.|.-|+-. . +. -+.+++.+|++|..+|+.+ .|...|.+++..... ...+.
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 345788999999888753 2 11 2678899999999999954 666666666654322 25778
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 024419 79 FRKGCILEAMEQYDDALSAFQTALQYNP 106 (268)
Q Consensus 79 ~~la~~~~~~~~~~~A~~~~~~~l~~~p 106 (268)
+.+|.+..+.|++++|...|.+++..--
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 8899999999999999999999997643
No 275
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.88 E-value=0.16 Score=42.76 Aligned_cols=153 Identities=11% Similarity=-0.033 Sum_probs=98.4
Q ss_pred HHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh--------------CC------------CC---HHHHHHHHH
Q 024419 33 AIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL--------------NP------------QW---EKGYFRKGC 83 (268)
Q Consensus 33 al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------------~p------------~~---~~~~~~la~ 83 (268)
.++.+|-+.+++..++.++..+|+.+.|.+..++||-. ++ .| ..+.+....
T Consensus 32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~ 111 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQ 111 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHH
Confidence 35679999999999999999999999999999888632 11 12 245677788
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHH-HHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhh
Q 024419 84 ILEAMEQYDDALSAFQTALQYNPQ-SAEVSRKIKRVSQ-LAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECW 161 (268)
Q Consensus 84 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (268)
.+.+.|-+..|.+..+-.+.+||. ++-.....-..+. ..++++--+.+....... ........+.+....
T Consensus 112 ~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~--------~~~~~~~~lPn~a~S 183 (360)
T PF04910_consen 112 SLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAK--------CYRNWLSLLPNFAFS 183 (360)
T ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhh--------hhhhhhhhCccHHHH
Confidence 888999999999999999999999 6654444433332 334444433332100000 000001112233344
Q ss_pred HHHHHHHHHHH---------------HHHHHhhhhhhhchhHHHHHh
Q 024419 162 KHVFSFVVETM---------------ETAVKSWHETSKVDAKVYFLL 193 (268)
Q Consensus 162 ~~~~~~~~~~~---------------~~A~~~~~~~~~~~~~~~~~~ 193 (268)
..+..+..++- +.|.....+++...|.+...+
T Consensus 184 ~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl~~L 230 (360)
T PF04910_consen 184 IALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVLVPL 230 (360)
T ss_pred HHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHHHHH
Confidence 44444445555 788888888888888854433
No 276
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.0032 Score=51.13 Aligned_cols=118 Identities=24% Similarity=0.290 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----------C--------ChHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 024419 8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDP-----------S--------NPTLFSNRAAAFLHLVKLNKALADAETTI 68 (268)
Q Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-----------~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~al 68 (268)
+.....|+..++.++|..|..-|.+++..-. + -.....+++.|-+..+.+..|+.....++
T Consensus 223 ~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~ 302 (372)
T KOG0546|consen 223 EKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEAL 302 (372)
T ss_pred hhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecccccc
Confidence 3445677889999999999999999876411 1 12456678899999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 024419 69 SLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDK 125 (268)
Q Consensus 69 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~ 125 (268)
..++....+++.++..+....++++|++.++.+....|++..+...+...-....++
T Consensus 303 ~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~ 359 (372)
T KOG0546|consen 303 RDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQY 359 (372)
T ss_pred ccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHH
Confidence 999999999999999999999999999999999999999998887777665555444
No 277
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.83 E-value=0.0024 Score=48.85 Aligned_cols=59 Identities=24% Similarity=0.482 Sum_probs=55.8
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 024419 50 AFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS 108 (268)
Q Consensus 50 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~ 108 (268)
...+.++.+.|.+.|.+++.+.|++...|+++|....+.|+++.|...|++.++++|.+
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 45567899999999999999999999999999999999999999999999999999987
No 278
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.78 E-value=0.041 Score=48.04 Aligned_cols=108 Identities=13% Similarity=0.166 Sum_probs=80.8
Q ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHhcCCCCh--HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 024419 11 KDKGNEF-FKAGNYLKAAALYTQAIKQDPSNP--TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEA 87 (268)
Q Consensus 11 ~~~g~~~-~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 87 (268)
...+-.| ..+|+.-+|..++..++-.-|... .++..+|.++.++|...+|--.+.-|+.-.|.....++.+|.++..
T Consensus 216 H~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~~i~am 295 (886)
T KOG4507|consen 216 HNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTLGNIYAM 295 (886)
T ss_pred HHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCccccccceeHHHHHHH
Confidence 3344444 356788888888888888766543 4677788888888888888888877777777777778888888888
Q ss_pred ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024419 88 MEQYDDALSAFQTALQYNPQSAEVSRKIKRV 118 (268)
Q Consensus 88 ~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 118 (268)
.+++.....+|..+.+.+|...........+
T Consensus 296 l~~~N~S~~~ydha~k~~p~f~q~~~q~~~~ 326 (886)
T KOG4507|consen 296 LGEYNHSVLCYDHALQARPGFEQAIKQRKHA 326 (886)
T ss_pred HhhhhhhhhhhhhhhccCcchhHHHHHHHHH
Confidence 8888888888888888888776555544443
No 279
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.75 E-value=0.082 Score=43.74 Aligned_cols=102 Identities=10% Similarity=-0.025 Sum_probs=81.2
Q ss_pred chHhHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 024419 3 AEAEEMSLKDKGNEFFKAGN------------YLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL 70 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~------------~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 70 (268)
+|.+.++|..+....-..-. .+.-+.+|++|++.+|++..++..+-.+..+..+.++..+-+++++..
T Consensus 15 ~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 15 NPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred CcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 68888888887765544322 567889999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHH---ccCHHHHHHHHHHHHhh
Q 024419 71 NPQWEKGYFRKGCILEA---MEQYDDALSAFQTALQY 104 (268)
Q Consensus 71 ~p~~~~~~~~la~~~~~---~~~~~~A~~~~~~~l~~ 104 (268)
+|.++..|...-..... .-.++.....|.+++..
T Consensus 95 ~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~ 131 (321)
T PF08424_consen 95 NPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRA 131 (321)
T ss_pred CCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Confidence 99998887665433322 33577778888887754
No 280
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.74 E-value=0.043 Score=39.93 Aligned_cols=85 Identities=15% Similarity=0.068 Sum_probs=76.7
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024419 41 PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQ 120 (268)
Q Consensus 41 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 120 (268)
...+..+..+-...++.+.+...+.-.--+.|..+.+-..-|.++...|++.+|+..++.+.+-.|..+.+--.++.++.
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY 89 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 45677778888888999999999998889999999999999999999999999999999999999999998888999988
Q ss_pred HHHHH
Q 024419 121 LAKDK 125 (268)
Q Consensus 121 ~~~~~ 125 (268)
.+++.
T Consensus 90 ~~~D~ 94 (160)
T PF09613_consen 90 ALGDP 94 (160)
T ss_pred HcCCh
Confidence 77654
No 281
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.083 Score=41.53 Aligned_cols=113 Identities=22% Similarity=0.251 Sum_probs=98.8
Q ss_pred HcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcC-ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHH-HHHH
Q 024419 19 KAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLV-KLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYD-DALS 96 (268)
Q Consensus 19 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~-~A~~ 96 (268)
+...-..|+..-..++.++|.+-.+|..+-.|+..++ +..+-++.+...+.-+|+|..+|..+-.+....|++. .-++
T Consensus 55 ~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELe 134 (318)
T KOG0530|consen 55 KNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELE 134 (318)
T ss_pred ccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHH
Confidence 4445678999999999999999999999988888764 6777788899999999999999999999999999988 7889
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHH
Q 024419 97 AFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV 131 (268)
Q Consensus 97 ~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 131 (268)
..+.++..+..|.-+|.....+....+.++.-..+
T Consensus 135 f~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y 169 (318)
T KOG0530|consen 135 FTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAY 169 (318)
T ss_pred HHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHH
Confidence 99999999999999999999998888887765443
No 282
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.59 E-value=0.05 Score=40.77 Aligned_cols=95 Identities=19% Similarity=0.139 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC--CCH----HHH
Q 024419 8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLHLVKLNKALADAETTISLNP--QWE----KGY 78 (268)
Q Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~~~----~~~ 78 (268)
.++..+|..+.+.|+++.|++.|.++....... .+.++++-.+....+++........++-.+-. .+. ...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 345566666666666666666666655543322 24455555555666666666666555544321 111 122
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHH
Q 024419 79 FRKGCILEAMEQYDDALSAFQTAL 102 (268)
Q Consensus 79 ~~la~~~~~~~~~~~A~~~~~~~l 102 (268)
..-|..+...++|..|.+.|-.++
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 333444555566666655555544
No 283
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=96.53 E-value=0.03 Score=44.31 Aligned_cols=77 Identities=23% Similarity=0.243 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024419 42 TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRV 118 (268)
Q Consensus 42 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 118 (268)
....++=..+...++++.|..+.++.+.++|.++.-+.-.|.+|.++|.+.-|++.++..++..|+.+.+-..-.++
T Consensus 182 rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l 258 (269)
T COG2912 182 RLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQL 258 (269)
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence 34445666788899999999999999999999999999999999999999999999999999999998876544444
No 284
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.51 E-value=0.32 Score=42.68 Aligned_cols=125 Identities=11% Similarity=-0.001 Sum_probs=105.7
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh-CCCCHHHHHHHHH
Q 024419 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL-NPQWEKGYFRKGC 83 (268)
Q Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~la~ 83 (268)
.+...|..-...-...|++....-.|++++--.......|...+.-....|+.+-|-..+..+.++ .|..+..+..-+.
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 345556666666778899999999999999988888999999999999999999999999888886 4667778888888
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhH
Q 024419 84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQ 129 (268)
Q Consensus 84 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~ 129 (268)
.-...|++..|...+++..+--|+...+-..-.......|..+.+.
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 8888999999999999999888998887776667777777776664
No 285
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.46 E-value=0.079 Score=35.90 Aligned_cols=82 Identities=22% Similarity=0.153 Sum_probs=66.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHccC-----------HHHHHHHHHHHHhhCCCCHHHH
Q 024419 47 RAAAFLHLVKLNKALADAETTISLNPQWE---KGYFRKGCILEAMEQ-----------YDDALSAFQTALQYNPQSAEVS 112 (268)
Q Consensus 47 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~-----------~~~A~~~~~~~l~~~p~~~~~~ 112 (268)
++.-++..|++-+|++..+..+..++++. ..+..-|.++..+.. .-.|+++|.++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 46778999999999999999999988765 556667888876542 2358899999999999998888
Q ss_pred HHHHHHHHHHHHHHHh
Q 024419 113 RKIKRVSQLAKDKKRA 128 (268)
Q Consensus 113 ~~l~~~~~~~~~~~~a 128 (268)
+.+|.-+.....++++
T Consensus 82 ~~la~~l~s~~~Ykk~ 97 (111)
T PF04781_consen 82 FELASQLGSVKYYKKA 97 (111)
T ss_pred HHHHHHhhhHHHHHHH
Confidence 8888876666666665
No 286
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.44 E-value=0.0056 Score=51.98 Aligned_cols=80 Identities=14% Similarity=0.186 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc---------CC---------CChHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 024419 9 SLKDKGNEFFKAGNYLKAAALYTQAIKQ---------DP---------SNPTLFSNRAAAFLHLVKLNKALADAETTISL 70 (268)
Q Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~---------~p---------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 70 (268)
.+.++|-+++..|.|.-++.+|.+|+.. .| .+..++++.|..|...|++-.|.++|.+++..
T Consensus 285 f~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v 364 (696)
T KOG2471|consen 285 FNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV 364 (696)
T ss_pred eecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH
Confidence 4567899999999999999999999961 11 24588999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHc
Q 024419 71 NPQWEKGYFRKGCILEAM 88 (268)
Q Consensus 71 ~p~~~~~~~~la~~~~~~ 88 (268)
.-.++..|.++|.|.+..
T Consensus 365 fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 365 FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred HhcCcHHHHHHHHHHHHH
Confidence 999999999999988753
No 287
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.38 E-value=0.4 Score=41.17 Aligned_cols=190 Identities=15% Similarity=0.108 Sum_probs=122.2
Q ss_pred HHcCCHHHHHHHHHHHHhcCCC------C--------hHHHHHHHHHHHHcCChHHHHHHHHHHHhh---CCC-------
Q 024419 18 FKAGNYLKAAALYTQAIKQDPS------N--------PTLFSNRAAAFLHLVKLNKALADAETTISL---NPQ------- 73 (268)
Q Consensus 18 ~~~~~~~~A~~~~~~al~~~p~------~--------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~p~------- 73 (268)
+..|=|++|.++-++++..-.. . ...+-++..|-.-.|++.+|++....+... .|.
T Consensus 286 m~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~ 365 (629)
T KOG2300|consen 286 MPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAH 365 (629)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHh
Confidence 3456677777777777765211 1 234557788889999999999888777654 444
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC-CH--HHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHH
Q 024419 74 WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQ-SA--EVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSE 150 (268)
Q Consensus 74 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 150 (268)
.+..++.+|.--...+.++.|...|..+.++-.. +. .+..+++.+|...++-+.--+..+.......... -
T Consensus 366 ~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~------s 439 (629)
T KOG2300|consen 366 EAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSL------S 439 (629)
T ss_pred HHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcc------h
Confidence 2445666777777788999999999999876443 22 3344566666665544333222111111100000 0
Q ss_pred hhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH----------------HHHHhhhhhhhHhhhhHHhcCCccc
Q 024419 151 MSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK----------------VYFLLDKEKTDTEKYAPIVNVDKAF 213 (268)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------------~~~~~~~~~~a~~~~~~~~~~~~~~ 213 (268)
-...-+.+.+..|.+.+.++++.+|.....+.++.... ++..+|+..++.+-.+.++.+.+..
T Consensus 440 sq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi 518 (629)
T KOG2300|consen 440 SQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKI 518 (629)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcC
Confidence 11113456677888889999999999988887766532 4667888889988888888885544
No 288
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.29 E-value=0.11 Score=45.29 Aligned_cols=105 Identities=19% Similarity=0.059 Sum_probs=72.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHH-HHhhCCCCHHHHHHH------HHHHH
Q 024419 14 GNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAET-TISLNPQWEKGYFRK------GCILE 86 (268)
Q Consensus 14 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~-al~~~p~~~~~~~~l------a~~~~ 86 (268)
.-.+...++...+......++..+|.+..+..++|.+....|....+...+.. +....|++......+ |....
T Consensus 74 si~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (620)
T COG3914 74 SILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLK 153 (620)
T ss_pred HhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHH
Confidence 44445556677777777777888888888888887777776666665555544 777777776555444 66666
Q ss_pred HccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024419 87 AMEQYDDALSAFQTALQYNPQSAEVSRKIKRV 118 (268)
Q Consensus 87 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 118 (268)
.+++..++.....++..+.|.++.+...+...
T Consensus 154 ~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 154 LLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 77777777777788888888776665555444
No 289
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.27 E-value=0.013 Score=31.93 Aligned_cols=29 Identities=21% Similarity=0.259 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 024419 42 TLFSNRAAAFLHLVKLNKALADAETTISL 70 (268)
Q Consensus 42 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 70 (268)
.++.++|.+|..+|++++|+..+++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 35566666666666666666666666554
No 290
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.16 E-value=0.11 Score=43.39 Aligned_cols=102 Identities=15% Similarity=0.191 Sum_probs=78.4
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCC---------------------------------ChHHHHHHHHHH
Q 024419 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ-DPS---------------------------------NPTLFSNRAAAF 51 (268)
Q Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~---------------------------------~~~~~~~~a~~~ 51 (268)
.+...+..+..+...|+..+|+..++..+.. ... .+.++..+|.-.
T Consensus 183 ~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~ 262 (352)
T PF02259_consen 183 LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWL 262 (352)
T ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHH
Confidence 4678889999999999999999999998881 110 124556666666
Q ss_pred HHc------CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCH-----------------HHHHHHHHHHHhhCCC
Q 024419 52 LHL------VKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQY-----------------DDALSAFQTALQYNPQ 107 (268)
Q Consensus 52 ~~~------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~-----------------~~A~~~~~~~l~~~p~ 107 (268)
... +..++++..|.++++.+|....+|+.+|..+...-+. ..|+..|-+++...|+
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 263 DELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 666 7888999999999999999999999999887765221 2366777777777666
No 291
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.05 E-value=0.43 Score=35.94 Aligned_cols=87 Identities=18% Similarity=0.088 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC-HHHHHHHHHH
Q 024419 43 LFSNRAAAFLHLVKLNKALADAETTISLNPQW---EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS-AEVSRKIKRV 118 (268)
Q Consensus 43 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~-~~~~~~l~~~ 118 (268)
+-+.++..+...+++++|+..++.++....+. .-+-.++|.+..++|++++|+..+...- +++. +..-...|.+
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~--~~~w~~~~~elrGDi 168 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIK--EESWAAIVAELRGDI 168 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc--cccHHHHHHHHhhhH
Confidence 34567788888899999999988888654332 3456788889999999998887776542 2222 2234556777
Q ss_pred HHHHHHHHHhHHH
Q 024419 119 SQLAKDKKRAQEV 131 (268)
Q Consensus 119 ~~~~~~~~~a~~~ 131 (268)
+...|+.++|..-
T Consensus 169 ll~kg~k~~Ar~a 181 (207)
T COG2976 169 LLAKGDKQEARAA 181 (207)
T ss_pred HHHcCchHHHHHH
Confidence 7777777777554
No 292
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=96.02 E-value=0.015 Score=46.65 Aligned_cols=77 Identities=10% Similarity=0.152 Sum_probs=66.8
Q ss_pred hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHH-HHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q 024419 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSN-RAAAFLHLVKLNKALADAETTISLNPQWEKGYFR 80 (268)
Q Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 80 (268)
|.++..|...+......|.|.+--..|.++++.+|.+++.|.. -+.-+...++.+.+...|.+++..||+++..|..
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 4566777788888888889999999999999999999999987 4456778899999999999999999999887654
No 293
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=96.00 E-value=0.53 Score=44.48 Aligned_cols=104 Identities=16% Similarity=0.225 Sum_probs=82.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHcC-------ChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024419 14 GNEFFKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLHLV-------KLNKALADAETTISLNPQWEKGYFRKGC 83 (268)
Q Consensus 14 g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~-------~~~~A~~~~~~al~~~p~~~~~~~~la~ 83 (268)
.+.+...+.|+.|+..|++.-.-.|.. .++.+..|.....+- .+++|+..|++... .|.-+--|...|.
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 560 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLGKAL 560 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHhHHH
Confidence 456677788999999999999999875 467888888876652 46677777766533 4566777899999
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024419 84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRV 118 (268)
Q Consensus 84 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 118 (268)
+|..+|++++-+++|.-+++..|.+|.+-..--.+
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (932)
T PRK13184 561 VYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHL 595 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHH
Confidence 99999999999999999999999998765544433
No 294
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=95.98 E-value=0.071 Score=45.65 Aligned_cols=77 Identities=16% Similarity=0.122 Sum_probs=65.9
Q ss_pred hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCC-hHHHHHHHHHHHhhCCCCHHHHHH
Q 024419 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVK-LNKALADAETTISLNPQWEKGYFR 80 (268)
Q Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~ 80 (268)
+.+...|........+.+.+.+--..|.+++..+|+++++|..-|.=.+..+. .+.|...+.++|+.+|+++..|..
T Consensus 102 ~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~e 179 (568)
T KOG2396|consen 102 NGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKE 179 (568)
T ss_pred CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHH
Confidence 34566777777777777889999999999999999999999999887777765 999999999999999999877643
No 295
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=95.94 E-value=0.21 Score=47.67 Aligned_cols=128 Identities=16% Similarity=0.142 Sum_probs=100.9
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHH------HHHHH-HhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh-------
Q 024419 5 AEEMSLKDKGNEFFKAGNYLKAAA------LYTQA-IKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL------- 70 (268)
Q Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~------~~~~a-l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------- 70 (268)
.++......|......|.+.+|.+ .+.+. -...|..+..+..++..+.+++++++|+..-.++.-+
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ 1009 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGK 1009 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccC
Confidence 567778888999999999998888 44422 2346788899999999999999999999998887654
Q ss_pred -CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419 71 -NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQY--------NPQSAEVSRKIKRVSQLAKDKKRAQEVE 132 (268)
Q Consensus 71 -~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 132 (268)
.|+....+.+++...+..++...|+..+.+++.+ .|.-.....+++.++...+.++.|....
T Consensus 1010 ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~l 1080 (1236)
T KOG1839|consen 1010 DSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYL 1080 (1236)
T ss_pred CCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHH
Confidence 3455778889998888889999999988888765 4555556677888877778888886663
No 296
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.93 E-value=0.22 Score=44.57 Aligned_cols=112 Identities=13% Similarity=0.105 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHh-----cCCCChHHHHHHHHHHHHcC-----ChHHHHHHHHHHHhh
Q 024419 6 EEMSLKDKGNEFFKA-----GNYLKAAALYTQAIK-----QDPSNPTLFSNRAAAFLHLV-----KLNKALADAETTISL 70 (268)
Q Consensus 6 ~~~~~~~~g~~~~~~-----~~~~~A~~~~~~al~-----~~p~~~~~~~~~a~~~~~~~-----~~~~A~~~~~~al~~ 70 (268)
+..+...+|.+++.- +|.+.|+.+|..+.. ..-..+.+.+.+|.+|.+.. ++..|...|.++-..
T Consensus 243 ~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~ 322 (552)
T KOG1550|consen 243 HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL 322 (552)
T ss_pred chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc
Confidence 344455555555433 577777777777765 11124456667777777643 556677777777665
Q ss_pred CCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 024419 71 NPQWEKGYFRKGCILEAME---QYDDALSAFQTALQYNPQSAEVSRKIKRVSQL 121 (268)
Q Consensus 71 ~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 121 (268)
. ++.+.+.+|.++.... ++..|.++|..+... .+..+.+.++.++..
T Consensus 323 g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~ 372 (552)
T KOG1550|consen 323 G--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYEL 372 (552)
T ss_pred C--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHh
Confidence 3 4456667777766554 456677777766533 455666666666544
No 297
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=95.90 E-value=0.14 Score=32.34 Aligned_cols=61 Identities=16% Similarity=0.153 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHH---HHHHHHcCChHHHHHHHHHH
Q 024419 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNR---AAAFLHLVKLNKALADAETT 67 (268)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~---a~~~~~~~~~~~A~~~~~~a 67 (268)
+......|.-++.+.+.++|+..++++++..++...-+..+ ..+|...|+|.+++...-+-
T Consensus 6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q 69 (80)
T PF10579_consen 6 AKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQ 69 (80)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677777777777777777777777766655444433 34556666666666554433
No 298
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.86 E-value=0.89 Score=42.82 Aligned_cols=102 Identities=12% Similarity=0.029 Sum_probs=63.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHH
Q 024419 13 KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYD 92 (268)
Q Consensus 13 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 92 (268)
.|.+....+-|++|...|.+- .-+..+..-+ -...++.+.|.+..+++ +.+.+|-++|.+..+.|...
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf----~~n~~A~~VL---ie~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~ 1121 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKF----DMNVSAIQVL---IENIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVK 1121 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHh----cccHHHHHHH---HHHhhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchH
Confidence 455666666777777776552 1122222111 12344555555555444 44678888888888888888
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHH
Q 024419 93 DALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV 131 (268)
Q Consensus 93 ~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 131 (268)
+|++.|-++ +++..+...-++....|.|++-..+
T Consensus 1122 dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~y 1155 (1666)
T KOG0985|consen 1122 DAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKY 1155 (1666)
T ss_pred HHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHH
Confidence 888888765 5667777777777777777766554
No 299
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.78 E-value=0.029 Score=30.46 Aligned_cols=30 Identities=23% Similarity=0.386 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 024419 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQ 36 (268)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 36 (268)
+.++..+|..+...|++++|+.++++++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 467899999999999999999999999986
No 300
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.75 E-value=0.076 Score=47.81 Aligned_cols=118 Identities=25% Similarity=0.414 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----hHHHHHHHHHHHHc--CChHHHHHHHHHHHhhCCCCHHHHHH
Q 024419 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN----PTLFSNRAAAFLHL--VKLNKALADAETTISLNPQWEKGYFR 80 (268)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~a~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~ 80 (268)
+......|+.+++.+++.+|.--|..++.+-|.+ +....+.+.|++.+ ++|..++....-++...|....+++.
T Consensus 53 a~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~ 132 (748)
T KOG4151|consen 53 ALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLK 132 (748)
T ss_pred HHHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhh
Confidence 4556778899999999999988899999888843 56677788887765 68999999999999999999999999
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 024419 81 KGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKD 124 (268)
Q Consensus 81 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~ 124 (268)
.+.+|...+.++-|+....-....+|.+..+...+.++......
T Consensus 133 r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll~~ 176 (748)
T KOG4151|consen 133 RARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLLEL 176 (748)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhh
Confidence 99999999999999999888888999997776655555544433
No 301
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=95.74 E-value=0.13 Score=40.77 Aligned_cols=71 Identities=13% Similarity=0.158 Sum_probs=62.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419 12 DKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (268)
Q Consensus 12 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 82 (268)
++=..+...++++.|..+.++.+.++|.++.-+--+|.+|.++|-+..|++.+...+..-|+.+.+-.-.+
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~ 256 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRA 256 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHH
Confidence 34446678899999999999999999999999999999999999999999999999999999876654433
No 302
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.71 E-value=0.2 Score=39.44 Aligned_cols=112 Identities=12% Similarity=0.139 Sum_probs=88.7
Q ss_pred chHhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChH-HHHHHHHHHHhhCCCCHHHHHH
Q 024419 3 AEAEEMSLKDKGNEFFKA-GNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLN-KALADAETTISLNPQWEKGYFR 80 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~-~A~~~~~~al~~~p~~~~~~~~ 80 (268)
+|.+-..|.-+-.++... .+..+-++++...++.+|++-.+|+.+-.+....|++. .-++..+.++..+.+|.-+|-.
T Consensus 73 NpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWsh 152 (318)
T KOG0530|consen 73 NPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSH 152 (318)
T ss_pred CcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHH
Confidence 444444554444444433 35778899999999999999999999999999999888 7788889999999999989888
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q 024419 81 KGCILEAMEQYDDALSAFQTALQYNPQSAEVSRK 114 (268)
Q Consensus 81 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 114 (268)
+-.+...-+.+++-+.+....|+.|-.|-.+|..
T Consensus 153 RqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~ 186 (318)
T KOG0530|consen 153 RQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQ 186 (318)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhhhccchhhe
Confidence 8888888888999888888888887766555543
No 303
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=95.70 E-value=0.051 Score=28.80 Aligned_cols=31 Identities=10% Similarity=0.122 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHccCHHHHHHH--HHHHHhhCCC
Q 024419 77 GYFRKGCILEAMEQYDDALSA--FQTALQYNPQ 107 (268)
Q Consensus 77 ~~~~la~~~~~~~~~~~A~~~--~~~~l~~~p~ 107 (268)
.++.+|..+...|++++|+.. |.-+..++|.
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 344455555555555555555 2244444443
No 304
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.64 E-value=1.1 Score=37.57 Aligned_cols=98 Identities=16% Similarity=0.049 Sum_probs=77.4
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024419 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN-PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI 84 (268)
Q Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 84 (268)
++-.....+......|++++|..-|+-.+. +|.. .-.+-.+-..-...|..+-|+.+-+.+-...|.-..++...=..
T Consensus 119 epLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~ 197 (531)
T COG3898 119 EPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEA 197 (531)
T ss_pred hHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHH
Confidence 344566778888999999999999998776 5533 22333344445678999999999999999999998888777777
Q ss_pred HHHccCHHHHHHHHHHHHhh
Q 024419 85 LEAMEQYDDALSAFQTALQY 104 (268)
Q Consensus 85 ~~~~~~~~~A~~~~~~~l~~ 104 (268)
....|+++.|++..+...+.
T Consensus 198 r~~~gdWd~AlkLvd~~~~~ 217 (531)
T COG3898 198 RCAAGDWDGALKLVDAQRAA 217 (531)
T ss_pred HHhcCChHHHHHHHHHHHHH
Confidence 88999999999988876543
No 305
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.63 E-value=0.27 Score=41.24 Aligned_cols=102 Identities=13% Similarity=0.087 Sum_probs=83.3
Q ss_pred HcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCC--hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc----CHH
Q 024419 19 KAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVK--LNKALADAETTISLNPQWEKGYFRKGCILEAME----QYD 92 (268)
Q Consensus 19 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~----~~~ 92 (268)
++.-.++-+.+...+++.+|++..+|+.+.+++.+.+. +..=+..++++++.||.|..+|...=-+..... ...
T Consensus 87 k~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~ 166 (421)
T KOG0529|consen 87 KQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEK 166 (421)
T ss_pred HHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccch
Confidence 33457788899999999999999999999999998764 678899999999999999887766554444432 356
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024419 93 DALSAFQTALQYNPQSAEVSRKIKRVSQ 120 (268)
Q Consensus 93 ~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 120 (268)
+-+++..+++.-++.|..+|..-..+..
T Consensus 167 ~El~ftt~~I~~nfSNYsaWhyRs~lL~ 194 (421)
T KOG0529|consen 167 EELEFTTKLINDNFSNYSAWHYRSLLLS 194 (421)
T ss_pred hHHHHHHHHHhccchhhhHHHHHHHHHH
Confidence 6788999999999999999988777765
No 306
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=95.61 E-value=0.22 Score=35.02 Aligned_cols=74 Identities=11% Similarity=0.133 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHh-cCCC-ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q 024419 7 EMSLKDKGNEFFKAG---NYLKAAALYTQAIK-QDPS-NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFR 80 (268)
Q Consensus 7 ~~~~~~~g~~~~~~~---~~~~A~~~~~~al~-~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 80 (268)
.+..++++..+.... +..+-+.+++..++ ..|. ..+..+.++..+++.++|+.++.+.+..++..|+|..+.-.
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 456678888887665 45678999999996 5554 35678889999999999999999999999999999876543
No 307
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=95.61 E-value=0.76 Score=37.32 Aligned_cols=108 Identities=18% Similarity=0.136 Sum_probs=60.0
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCCC-HHHHH
Q 024419 9 SLKDKGNEFFK----AGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLH----LVKLNKALADAETTISLNPQW-EKGYF 79 (268)
Q Consensus 9 ~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~-~~~~~ 79 (268)
+...+|..+.. ..+..+|+..|+. ..+..++.+.+.+|.+|.. ..+..+|...|+++....-.. ..+.+
T Consensus 75 a~~~l~~~y~~g~gv~~~~~~A~~~~~~--~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~ 152 (292)
T COG0790 75 ALALLGQMYGAGKGVSRDKTKAADWYRC--AAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMY 152 (292)
T ss_pred HHHHHHHHHHhccCccccHHHHHHHHHH--HhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHH
Confidence 34444444443 2356667776663 3344556666667766665 336667777777776653222 23356
Q ss_pred HHHHHHHHcc-------CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024419 80 RKGCILEAME-------QYDDALSAFQTALQYNPQSAEVSRKIKRVSQ 120 (268)
Q Consensus 80 ~la~~~~~~~-------~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 120 (268)
.+|.+|..-. +...|+..|.++-... ++.+...+|.++.
T Consensus 153 ~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~ 198 (292)
T COG0790 153 RLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYE 198 (292)
T ss_pred HHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHH
Confidence 6666665531 2225666666665554 5566666665553
No 308
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=95.60 E-value=0.031 Score=30.01 Aligned_cols=28 Identities=14% Similarity=0.259 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 024419 43 LFSNRAAAFLHLVKLNKALADAETTISL 70 (268)
Q Consensus 43 ~~~~~a~~~~~~~~~~~A~~~~~~al~~ 70 (268)
++..+|.+-+..++|++|+..|++++.+
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3444445555555555555555554443
No 309
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.59 E-value=1.2 Score=37.50 Aligned_cols=83 Identities=12% Similarity=0.094 Sum_probs=71.1
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHH---ccCHHHHHHHHHH-HHhhCCCCHHH
Q 024419 40 NPTLFSNRAAAFLHLVKLNKALADAETTISL----NPQWEKGYFRKGCILEA---MEQYDDALSAFQT-ALQYNPQSAEV 111 (268)
Q Consensus 40 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~~~~~~A~~~~~~-~l~~~p~~~~~ 111 (268)
++++..++=.+|....+|+.-++..+..-.+ -++.+.+.+.+|-++.+ .|+.++|+..+.. +....+.+++.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 4677888888999999999999999888777 45567888899999999 9999999999999 55567788999
Q ss_pred HHHHHHHHHHH
Q 024419 112 SRKIKRVSQLA 122 (268)
Q Consensus 112 ~~~l~~~~~~~ 122 (268)
+..+|.++...
T Consensus 220 ~gL~GRIyKD~ 230 (374)
T PF13281_consen 220 LGLLGRIYKDL 230 (374)
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 310
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.59 E-value=0.28 Score=35.25 Aligned_cols=84 Identities=15% Similarity=0.047 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 024419 42 TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL 121 (268)
Q Consensus 42 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 121 (268)
..+.....+-...++.+++...+.-.--+.|+.+.+-..-|.++...|++.+|+..++...+-.|..+..--.++.++..
T Consensus 11 ~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a 90 (153)
T TIGR02561 11 GGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNA 90 (153)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh
Confidence 45556666666789999999999888889999999999999999999999999999999998888888888888888888
Q ss_pred HHHH
Q 024419 122 AKDK 125 (268)
Q Consensus 122 ~~~~ 125 (268)
+++.
T Consensus 91 l~Dp 94 (153)
T TIGR02561 91 KGDA 94 (153)
T ss_pred cCCh
Confidence 7654
No 311
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.50 E-value=0.085 Score=34.95 Aligned_cols=54 Identities=19% Similarity=0.212 Sum_probs=31.2
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCC---------hHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 024419 17 FFKAGNYLKAAALYTQAIKQDPSN---------PTLFSNRAAAFLHLVKLNKALADAETTISL 70 (268)
Q Consensus 17 ~~~~~~~~~A~~~~~~al~~~p~~---------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 70 (268)
....|+|..|++.+.+.......+ ..+..++|.++...|++++|+..+++++.+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 356677777777777666543221 234455555555566666666666655554
No 312
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.50 E-value=1.1 Score=36.36 Aligned_cols=100 Identities=14% Similarity=0.052 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhc----CCC---C-------hHHHHHHHHHHHHcCChH---HHHHHHHHHH
Q 024419 7 EMSLKDKGNEFFKAG-NYLKAAALYTQAIKQ----DPS---N-------PTLFSNRAAAFLHLVKLN---KALADAETTI 68 (268)
Q Consensus 7 ~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~----~p~---~-------~~~~~~~a~~~~~~~~~~---~A~~~~~~al 68 (268)
++.+++.|......+ ++++|+..++++.++ .+. + ..++..++.+|...+.++ +|....+.+-
T Consensus 35 a~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~ 114 (278)
T PF08631_consen 35 ARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLE 114 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 456788999999999 999999999999887 221 1 356778899999988765 4444555555
Q ss_pred hhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 024419 69 SLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNP 106 (268)
Q Consensus 69 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p 106 (268)
...|+.+.++...=.+....++.+.+.+.+.+.+..-+
T Consensus 115 ~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 115 SEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 56788777774444555558889999999999887644
No 313
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.48 E-value=0.13 Score=41.34 Aligned_cols=80 Identities=15% Similarity=0.133 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 024419 23 YLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTAL 102 (268)
Q Consensus 23 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l 102 (268)
|..=+...+++++. ....++..++..+...|+++.+++.+++.+..+|.+-..|..+-.+|...|+...|+..|++.-
T Consensus 137 f~~WV~~~R~~l~e--~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 137 FDEWVLEQRRALEE--LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 55555555555543 2456788888888888888888899988888888888888888888888888888888888876
Q ss_pred hh
Q 024419 103 QY 104 (268)
Q Consensus 103 ~~ 104 (268)
+.
T Consensus 215 ~~ 216 (280)
T COG3629 215 KT 216 (280)
T ss_pred HH
Confidence 64
No 314
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=95.48 E-value=0.071 Score=28.24 Aligned_cols=30 Identities=17% Similarity=0.084 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHcCChHHHHHH--HHHHHhhCC
Q 024419 43 LFSNRAAAFLHLVKLNKALAD--AETTISLNP 72 (268)
Q Consensus 43 ~~~~~a~~~~~~~~~~~A~~~--~~~al~~~p 72 (268)
.++.+|..+..+|++++|+.. |+-+..++|
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 344555555555555555555 334444444
No 315
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=95.47 E-value=0.086 Score=42.46 Aligned_cols=62 Identities=16% Similarity=0.067 Sum_probs=37.4
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 024419 26 AAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEA 87 (268)
Q Consensus 26 A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 87 (268)
|..+|.+|+.+.|.++..++.+|.++...|+.=.|+=+|-+++-....++.+.-++...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 55666666666666666666666666666666666666666665544445566666655555
No 316
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.40 E-value=0.61 Score=39.78 Aligned_cols=123 Identities=15% Similarity=0.004 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHH--HHHHH---------hhCCC-
Q 024419 7 EMSLKDKGNEFFKAGN-YLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALAD--AETTI---------SLNPQ- 73 (268)
Q Consensus 7 ~~~~~~~g~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~--~~~al---------~~~p~- 73 (268)
+.-+..-|..+...|. -++|+..++.+++..|.+...-.. .+.+-...|.+|+.. +-+.+ .+.|-
T Consensus 379 vh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~--v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~ 456 (549)
T PF07079_consen 379 VHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENI--VFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPIT 456 (549)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHH--HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCccc
Confidence 4456677888889887 789999999999999887643221 122223334444321 11111 22332
Q ss_pred --CHHHHHHHH--HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419 74 --WEKGYFRKG--CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE 132 (268)
Q Consensus 74 --~~~~~~~la--~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 132 (268)
+.+.-..++ .-++..|+|.++..+-.-..+++| .+.+++.+|-+......+++|-.+.
T Consensus 457 i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l 518 (549)
T PF07079_consen 457 ISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYL 518 (549)
T ss_pred ccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 334444454 446779999999999999999999 8999999999999999999997764
No 317
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=95.33 E-value=0.038 Score=29.64 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 024419 76 KGYFRKGCILEAMEQYDDALSAFQTALQY 104 (268)
Q Consensus 76 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 104 (268)
++|..||.+-...++|++|+..|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 57889999999999999999999999976
No 318
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.31 E-value=0.71 Score=37.03 Aligned_cols=122 Identities=15% Similarity=0.074 Sum_probs=80.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc----CC----CChHHHHHHHHHHHHcCChHH----------H---------HHH
Q 024419 11 KDKGNEFFKAGNYLKAAALYTQAIKQ----DP----SNPTLFSNRAAAFLHLVKLNK----------A---------LAD 63 (268)
Q Consensus 11 ~~~g~~~~~~~~~~~A~~~~~~al~~----~p----~~~~~~~~~a~~~~~~~~~~~----------A---------~~~ 63 (268)
..+|+...+.+++++|+..|.+.+.. +. ....+..+++..|..+|++.. + .+.
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 67888899999999999999999976 22 124577889999999998642 1 222
Q ss_pred HHHHHhhCCC---CH------------------------HHHHHHHHHHHHccCHHHHHHHHHHHHhh------CCCCHH
Q 024419 64 AETTISLNPQ---WE------------------------KGYFRKGCILEAMEQYDDALSAFQTALQY------NPQSAE 110 (268)
Q Consensus 64 ~~~al~~~p~---~~------------------------~~~~~la~~~~~~~~~~~A~~~~~~~l~~------~p~~~~ 110 (268)
.+..++.-|. +. ..-..+..++++.|+|.+|+......+.- .|+-..
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence 2333333332 21 11133667788889999998777666532 244456
Q ss_pred HHHHHHHHHHHHHHHHHhHHHH
Q 024419 111 VSRKIKRVSQLAKDKKRAQEVE 132 (268)
Q Consensus 111 ~~~~l~~~~~~~~~~~~a~~~~ 132 (268)
++..-..++...++..++....
T Consensus 167 vhllESKvyh~irnv~KskaSL 188 (421)
T COG5159 167 VHLLESKVYHEIRNVSKSKASL 188 (421)
T ss_pred hhhhhHHHHHHHHhhhhhhhHH
Confidence 6777777777777776665443
No 319
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.24 E-value=0.15 Score=33.75 Aligned_cols=57 Identities=16% Similarity=0.205 Sum_probs=46.3
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCC---------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 024419 50 AFLHLVKLNKALADAETTISLNPQ---------WEKGYFRKGCILEAMEQYDDALSAFQTALQYNP 106 (268)
Q Consensus 50 ~~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p 106 (268)
-..+.|+|..|++.+.+....... ...+...+|.++...|++++|+..++.++++..
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 346789999999988888765332 245678899999999999999999999998754
No 320
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.20 E-value=0.59 Score=41.88 Aligned_cols=107 Identities=14% Similarity=0.123 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHcC-----CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcC---ChHHHHHHHHHHHhhCCCCHHHHHH
Q 024419 9 SLKDKGNEFFKAG-----NYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLV---KLNKALADAETTISLNPQWEKGYFR 80 (268)
Q Consensus 9 ~~~~~g~~~~~~~-----~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~ 80 (268)
+...+|.+|.... ++..|..+|.++-... ++.+.+.+|.|+..-. +...|..+|..|.+. .++.+.++
T Consensus 290 a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~ 365 (552)
T KOG1550|consen 290 AQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYR 365 (552)
T ss_pred cccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHH
Confidence 5667888888743 7889999999998774 6778888999988766 678999999999775 57889999
Q ss_pred HHHHHHHc----cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 024419 81 KGCILEAM----EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL 121 (268)
Q Consensus 81 la~~~~~~----~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 121 (268)
+|.||..- .+.+.|...++++-+.. ++.+...++..+..
T Consensus 366 la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~ 408 (552)
T KOG1550|consen 366 LALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEY 408 (552)
T ss_pred HHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHH
Confidence 99999764 57899999999999887 55555556655543
No 321
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=95.17 E-value=0.34 Score=46.33 Aligned_cols=129 Identities=20% Similarity=0.197 Sum_probs=104.9
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh----
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ--------DPSNPTLFSNRAAAFLHLVKLNKALADAETTISL---- 70 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---- 70 (268)
.|..+..+..++..+...+++++|+..-.++.-+ .|+....+.+++...+..++...|...+.++..+
T Consensus 969 h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls 1048 (1236)
T KOG1839|consen 969 HPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLS 1048 (1236)
T ss_pred chhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccc
Confidence 5677888999999999999999999998887654 2455678899999999999999999999988765
Q ss_pred ----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC--------CHHHHHHHHHHHHHHHHHHHhHHH
Q 024419 71 ----NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQ--------SAEVSRKIKRVSQLAKDKKRAQEV 131 (268)
Q Consensus 71 ----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~--------~~~~~~~l~~~~~~~~~~~~a~~~ 131 (268)
.|.-+....+++.++...++++.|+.+.+.|+.++.. +...+..++++....+.+..|...
T Consensus 1049 ~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ 1121 (1236)
T KOG1839|consen 1049 SGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEH 1121 (1236)
T ss_pred cCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHH
Confidence 5666677788999999999999999999999986432 345677777777777777776544
No 322
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=95.11 E-value=0.12 Score=41.60 Aligned_cols=62 Identities=13% Similarity=0.070 Sum_probs=53.5
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 024419 60 ALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL 121 (268)
Q Consensus 60 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 121 (268)
|+.+|.+|+.+.|.+..+|.++|.+....|+.=.|+-+|-+++......+.+..+|..+...
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999997765568888999888877
No 323
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=95.10 E-value=1.7 Score=37.99 Aligned_cols=73 Identities=12% Similarity=0.104 Sum_probs=49.1
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 024419 31 TQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQY 104 (268)
Q Consensus 31 ~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 104 (268)
++-++.+|.+..+|+.+-.-+..+ .+++..+.|++.+...|..+.+|..........++|+.-...|.++|..
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk 82 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK 82 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 445666777777777666555444 6777777777777777777777776666666777777766666666643
No 324
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.08 E-value=0.43 Score=35.77 Aligned_cols=64 Identities=8% Similarity=-0.011 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 024419 41 PTLFSNRAAAFLHLVKLNKALADAETTISLNPQ---WEKGYFRKGCILEAMEQYDDALSAFQTALQY 104 (268)
Q Consensus 41 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 104 (268)
..++..+|.-|.+.|+.+.|++.|.++...... ..+.++.+-.+....+++........++-.+
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 356778888888888888888888887765432 2566777777777778887777777766543
No 325
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=94.89 E-value=0.48 Score=36.67 Aligned_cols=78 Identities=13% Similarity=-0.026 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHhcCCC------ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 024419 6 EEMSLKDKGNEFFKAGNY-------LKAAALYTQAIKQDPS------NPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72 (268)
Q Consensus 6 ~~~~~~~~g~~~~~~~~~-------~~A~~~~~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p 72 (268)
-+..+..+|..+...|+- ..|++.|.+++..... ...+.+.+|.+.++.|++++|+..|.+++...-
T Consensus 117 ~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 117 KAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 466778899999999984 4566666666655432 247888899999999999999999999998643
Q ss_pred CCH-HHHHHHHH
Q 024419 73 QWE-KGYFRKGC 83 (268)
Q Consensus 73 ~~~-~~~~~la~ 83 (268)
... .....+|.
T Consensus 197 ~s~~~~l~~~AR 208 (214)
T PF09986_consen 197 ASKEPKLKDMAR 208 (214)
T ss_pred CCCcHHHHHHHH
Confidence 332 34455544
No 326
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=94.88 E-value=2.4 Score=36.98 Aligned_cols=92 Identities=11% Similarity=-0.088 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 024419 9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAM 88 (268)
Q Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 88 (268)
.+..+-..+.++..++-......+.+... .+.-++..++.||... ..++=...+++.++.+=++...-..|+..|.+
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk- 144 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK- 144 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-
Confidence 34444444444445555555666666643 4556777788888777 45666777787777777777666677766666
Q ss_pred cCHHHHHHHHHHHHh
Q 024419 89 EQYDDALSAFQTALQ 103 (268)
Q Consensus 89 ~~~~~A~~~~~~~l~ 103 (268)
++-+.+...|.+++.
T Consensus 145 ik~sk~a~~f~Ka~y 159 (711)
T COG1747 145 IKKSKAAEFFGKALY 159 (711)
T ss_pred hchhhHHHHHHHHHH
Confidence 777777788887764
No 327
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=94.61 E-value=0.59 Score=29.55 Aligned_cols=56 Identities=11% Similarity=0.025 Sum_probs=32.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH---HHHHHHHHccCHHHHHHHHH
Q 024419 44 FSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYF---RKGCILEAMEQYDDALSAFQ 99 (268)
Q Consensus 44 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~---~la~~~~~~~~~~~A~~~~~ 99 (268)
....|.-++..++.++|+..++++++..++...-+. .+..+|...|+|++++++-.
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666677777777777766655543333 33445556666666654433
No 328
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=94.58 E-value=0.2 Score=43.37 Aligned_cols=81 Identities=16% Similarity=0.062 Sum_probs=70.5
Q ss_pred HHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHh
Q 024419 52 LHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAM---EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRA 128 (268)
Q Consensus 52 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a 128 (268)
+..+....|+..|.+++...|.....+.+.+.++.+. |+.-.|+.....+++++|....+|+.|+.++..++.+.+|
T Consensus 385 ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~ea 464 (758)
T KOG1310|consen 385 LYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEA 464 (758)
T ss_pred hhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHh
Confidence 3345678999999999999999999999999888875 4566788889999999999999999999999999999998
Q ss_pred HHHH
Q 024419 129 QEVE 132 (268)
Q Consensus 129 ~~~~ 132 (268)
....
T Consensus 465 l~~~ 468 (758)
T KOG1310|consen 465 LSCH 468 (758)
T ss_pred hhhH
Confidence 7653
No 329
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=94.58 E-value=1.6 Score=38.58 Aligned_cols=105 Identities=20% Similarity=0.116 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHhcCCCChHHHHH--HHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHH-
Q 024419 24 LKAAALYTQAIKQDPSNPTLFSN--RAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQT- 100 (268)
Q Consensus 24 ~~A~~~~~~al~~~p~~~~~~~~--~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~- 100 (268)
.-++..+..-+.++|.++.++.. +...+...+....+......++..+|.+..++..+|.+....|....+...+..
T Consensus 48 ~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~ 127 (620)
T COG3914 48 ALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEI 127 (620)
T ss_pred hHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 33677777777788888877544 477788889999999999999999999999999999998888887777666655
Q ss_pred HHhhCCCCHHHHHHH------HHHHHHHHHHHHh
Q 024419 101 ALQYNPQSAEVSRKI------KRVSQLAKDKKRA 128 (268)
Q Consensus 101 ~l~~~p~~~~~~~~l------~~~~~~~~~~~~a 128 (268)
+....|++......+ ++....++...++
T Consensus 128 a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (620)
T COG3914 128 AEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEA 161 (620)
T ss_pred HHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHH
Confidence 889999998877766 4444444444444
No 330
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=94.58 E-value=0.79 Score=34.80 Aligned_cols=74 Identities=11% Similarity=0.057 Sum_probs=53.2
Q ss_pred cCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHHHHHHHh
Q 024419 54 LVKLNKALADAETTISLN-PQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQ----SAEVSRKIKRVSQLAKDKKRA 128 (268)
Q Consensus 54 ~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~----~~~~~~~l~~~~~~~~~~~~a 128 (268)
...-+.|...|-++-... -+.++..+.+|..|. ..+.++|+..+.++|++.+. |++++..|+.++..+++++.|
T Consensus 119 r~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 119 RFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 334466777665554322 145777777776554 77888899999999987543 488889999999988888877
No 331
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=94.54 E-value=0.24 Score=41.68 Aligned_cols=84 Identities=15% Similarity=-0.013 Sum_probs=69.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhCC--------C-----CH-----HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 024419 47 RAAAFLHLVKLNKALADAETTISLNP--------Q-----WE-----KGYFRKGCILEAMEQYDDALSAFQTALQYNPQS 108 (268)
Q Consensus 47 ~a~~~~~~~~~~~A~~~~~~al~~~p--------~-----~~-----~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~ 108 (268)
=|..++++++|..|...|+.+|++.. . ++ ..--.+..||..+++.+.|+..-.+.+-++|..
T Consensus 182 das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~ 261 (569)
T PF15015_consen 182 DASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSY 261 (569)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcch
Confidence 35567788889999888888887632 1 11 233568899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHH
Q 024419 109 AEVSRKIKRVSQLAKDKKRAQE 130 (268)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~~a~~ 130 (268)
...+...+.+...+..|.+|..
T Consensus 262 frnHLrqAavfR~LeRy~eAar 283 (569)
T PF15015_consen 262 FRNHLRQAAVFRRLERYSEAAR 283 (569)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988754
No 332
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.42 E-value=0.5 Score=42.02 Aligned_cols=88 Identities=16% Similarity=0.080 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419 43 LFSNRAAAFLHLVKLNKALADAETTISLNPQ------WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIK 116 (268)
Q Consensus 43 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~ 116 (268)
++.+-|.-.+++.+|..+++.|...+..-|. ++.....++.||..+.+.+.|.++++.|-+.+|.++-.-....
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~ 435 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML 435 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 4445677788999999999999999987654 3677888999999999999999999999999999987766666
Q ss_pred HHHHHHHHHHHhHH
Q 024419 117 RVSQLAKDKKRAQE 130 (268)
Q Consensus 117 ~~~~~~~~~~~a~~ 130 (268)
.+....+..++|..
T Consensus 436 ~~~~~E~~Se~AL~ 449 (872)
T KOG4814|consen 436 QSFLAEDKSEEALT 449 (872)
T ss_pred HHHHHhcchHHHHH
Confidence 66666666666654
No 333
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=94.32 E-value=4.5 Score=37.66 Aligned_cols=124 Identities=13% Similarity=-0.017 Sum_probs=92.7
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--C-------hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC--
Q 024419 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPS--N-------PTLFSNRAAAFLHLVKLNKALADAETTISLNPQW-- 74 (268)
Q Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~-------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-- 74 (268)
++.-....+.....+.++.+|..+..++-..-|. . +..--..|.+....|++++|++..+.++..-|.+
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~ 493 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY 493 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence 3455677888899999999999999988776443 1 2445567888899999999999999999987764
Q ss_pred ---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC----CCHHH--HHHHHHHHHHHHHHHHhH
Q 024419 75 ---EKGYFRKGCILEAMEQYDDALSAFQTALQYNP----QSAEV--SRKIKRVSQLAKDKKRAQ 129 (268)
Q Consensus 75 ---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p----~~~~~--~~~l~~~~~~~~~~~~a~ 129 (268)
+.++..+|.+..-.|++++|......+.+... -...+ ....+.+...+|+...++
T Consensus 494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~ 557 (894)
T COG2909 494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAE 557 (894)
T ss_pred hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 46678889999999999999999998887733 22333 334455666667444443
No 334
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.22 E-value=2.4 Score=34.33 Aligned_cols=112 Identities=15% Similarity=0.074 Sum_probs=79.4
Q ss_pred HHHcCCHHHHHHHHHHHHhcC----CCC----hHHHHHHHHHHHHcC-ChHHHHHHHHHHHhh----CC---C-------
Q 024419 17 FFKAGNYLKAAALYTQAIKQD----PSN----PTLFSNRAAAFLHLV-KLNKALADAETTISL----NP---Q------- 73 (268)
Q Consensus 17 ~~~~~~~~~A~~~~~~al~~~----p~~----~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~----~p---~------- 73 (268)
...+|+++.|..++.++-... |+. ...+++.|......+ +++.|+..++++.++ .+ .
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 467899999999999987654 433 467888999999999 999999999999887 22 1
Q ss_pred CHHHHHHHHHHHHHccCHHH---HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHh
Q 024419 74 WEKGYFRKGCILEAMEQYDD---ALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRA 128 (268)
Q Consensus 74 ~~~~~~~la~~~~~~~~~~~---A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a 128 (268)
...++..++.++...+.++. |....+.+-...|+.+..+..--.+....+..+.+
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~ 140 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEY 140 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHH
Confidence 13567778889988887654 55555556566788777774444444443333333
No 335
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=94.20 E-value=0.67 Score=35.68 Aligned_cols=63 Identities=19% Similarity=0.142 Sum_probs=56.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH
Q 024419 13 KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWE 75 (268)
Q Consensus 13 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~ 75 (268)
....+.+.++.++|+...+.-++..|.+......+-..+.-.|+|++|...++-+-++.|++.
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 345678889999999999999999999999999999999999999999999999999999863
No 336
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=94.13 E-value=0.094 Score=25.39 Aligned_cols=17 Identities=24% Similarity=0.053 Sum_probs=6.5
Q ss_pred HHHHHHHHcCChHHHHH
Q 024419 46 NRAAAFLHLVKLNKALA 62 (268)
Q Consensus 46 ~~a~~~~~~~~~~~A~~ 62 (268)
.+|.++...|++++|..
T Consensus 6 ~la~~~~~~G~~~eA~~ 22 (26)
T PF07721_consen 6 ALARALLAQGDPDEAER 22 (26)
T ss_pred HHHHHHHHcCCHHHHHH
Confidence 33333333333333333
No 337
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=94.09 E-value=0.27 Score=39.36 Aligned_cols=61 Identities=20% Similarity=0.208 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 024419 42 TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTAL 102 (268)
Q Consensus 42 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l 102 (268)
..+...+..|...|.+.+|++..+++++++|-+-..+..+-.++..+|+--.+++.|++.-
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3445567777888888888888888888888888888888888888888777777766654
No 338
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=94.04 E-value=4.8 Score=36.93 Aligned_cols=124 Identities=12% Similarity=0.033 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhHHH
Q 024419 111 VSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKVY 190 (268)
Q Consensus 111 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 190 (268)
.|..-|.++..+.++++|.+........-....+..+. ...........-|.....+++++.|+.+|-.+-.+-..+-
T Consensus 663 lydkagdlfeki~d~dkale~fkkgdaf~kaielarfa--fp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaie 740 (1636)
T KOG3616|consen 663 LYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFA--FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIE 740 (1636)
T ss_pred HHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhh--CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHH
Confidence 34455556666666677766654444444333333221 1112223333444455567788888877766543333222
Q ss_pred HH--hhhhhhhHhhhhHHhcCCccccCccchhHHHHHHHHH--HHHHHHH
Q 024419 191 FL--LDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQY--ADDSFSS 236 (268)
Q Consensus 191 ~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--a~~~~~k 236 (268)
-. ..++.+|+......-+...........+..|...+.| |.+.|.+
T Consensus 741 aai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e 790 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTE 790 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHh
Confidence 22 2244444443333333222221122244445555555 4444443
No 339
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=94.00 E-value=1 Score=40.96 Aligned_cols=60 Identities=28% Similarity=0.287 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHH------HHhh----CCCC-HHHHHHHHHHHHHccCHHHHHHHHHHH
Q 024419 42 TLFSNRAAAFLHLVKLNKALADAET------TISL----NPQW-EKGYFRKGCILEAMEQYDDALSAFQTA 101 (268)
Q Consensus 42 ~~~~~~a~~~~~~~~~~~A~~~~~~------al~~----~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~~ 101 (268)
..|-.-|.++.+..++++|+++|++ ++++ -|.. ...--.+|.-+.+.|+++.|+.+|-.+
T Consensus 662 elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea 732 (1636)
T KOG3616|consen 662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEA 732 (1636)
T ss_pred HHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHh
Confidence 3455567788888889999998864 4444 2332 233345677888889999888877655
No 340
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=93.98 E-value=0.097 Score=25.33 Aligned_cols=24 Identities=17% Similarity=0.098 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHH
Q 024419 76 KGYFRKGCILEAMEQYDDALSAFQ 99 (268)
Q Consensus 76 ~~~~~la~~~~~~~~~~~A~~~~~ 99 (268)
.+.+.+|.++...|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 467889999999999999988775
No 341
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.85 E-value=0.53 Score=37.87 Aligned_cols=74 Identities=8% Similarity=0.108 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419 57 LNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE 132 (268)
Q Consensus 57 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 132 (268)
+..=+...+++++. ....++..++..+...|+++.++..+++.+..+|.+..+|..+...+...|....|+..+
T Consensus 137 f~~WV~~~R~~l~e--~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y 210 (280)
T COG3629 137 FDEWVLEQRRALEE--LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAY 210 (280)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHH
Confidence 34444444444442 457789999999999999999999999999999999999999999999999998887664
No 342
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=93.76 E-value=0.3 Score=34.99 Aligned_cols=48 Identities=21% Similarity=0.081 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Q 024419 42 TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAME 89 (268)
Q Consensus 42 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 89 (268)
+.....+...+..|++.-|......++..+|++..+...++.++.++|
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 333444444444455555555555555555555545444454444444
No 343
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.62 E-value=1.2 Score=37.54 Aligned_cols=114 Identities=14% Similarity=0.099 Sum_probs=91.4
Q ss_pred CchHhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCC----hHHHHHHHHHHHhhCCCCH
Q 024419 2 AAEAEEMSLKDKGNEFFKAG--NYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVK----LNKALADAETTISLNPQWE 75 (268)
Q Consensus 2 ~~~~~~~~~~~~g~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~----~~~A~~~~~~al~~~p~~~ 75 (268)
.+|+.-.+|..+..++.+++ ++..-++..+++++.||.|-.+|..+=.+...... ..+=++...++|.-|+.|.
T Consensus 104 ~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNY 183 (421)
T KOG0529|consen 104 VNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNY 183 (421)
T ss_pred hCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhh
Confidence 36788889999999998876 47899999999999999999999887666655433 5667888899999999999
Q ss_pred HHHHHHHHHHHH------ccC------HHHHHHHHHHHHhhCCCCHHHHHHH
Q 024419 76 KGYFRKGCILEA------MEQ------YDDALSAFQTALQYNPQSAEVSRKI 115 (268)
Q Consensus 76 ~~~~~la~~~~~------~~~------~~~A~~~~~~~l~~~p~~~~~~~~l 115 (268)
.+|.....++.. .|. ...-++.-..++-.+|++..+|...
T Consensus 184 saWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~ 235 (421)
T KOG0529|consen 184 SAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYH 235 (421)
T ss_pred hHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeeh
Confidence 999998887773 231 3345677788888999998887753
No 344
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=93.30 E-value=1.9 Score=29.84 Aligned_cols=60 Identities=15% Similarity=0.117 Sum_probs=42.0
Q ss_pred HHHHHHH--HHHHcCChHHHHHHHHHHHhhCCC------------CHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 024419 43 LFSNRAA--AFLHLVKLNKALADAETTISLNPQ------------WEKGYFRKGCILEAMEQYDDALSAFQTAL 102 (268)
Q Consensus 43 ~~~~~a~--~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~~~~~~A~~~~~~~l 102 (268)
+|+.++. -.+.-|-|++|...++++....-. +.-+|-.|+.++..+|+|++++..-.++|
T Consensus 9 aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL 82 (144)
T PF12968_consen 9 AYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRAL 82 (144)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 4444443 345568899999999999876322 24567778889999999999988877776
No 345
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.25 E-value=3.6 Score=32.96 Aligned_cols=50 Identities=4% Similarity=0.080 Sum_probs=35.2
Q ss_pred cCCHHHHHHHHHHHHhcCCCCh----HHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 024419 20 AGNYLKAAALYTQAIKQDPSNP----TLFSNRAAAFLHLVKLNKALADAETTIS 69 (268)
Q Consensus 20 ~~~~~~A~~~~~~al~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~ 69 (268)
..+.++|+.-|++++++.|..+ .++-.+-.+++++++|++..+.|++.+.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 3467778888888888777654 3555666777777777777777776654
No 346
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=92.99 E-value=6 Score=34.85 Aligned_cols=117 Identities=11% Similarity=-0.046 Sum_probs=86.3
Q ss_pred CchHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH-
Q 024419 2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFR- 80 (268)
Q Consensus 2 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~- 80 (268)
.+|-+..+|..+..-+..+ -+++..+.|++.+...|.++++|.......+...+|+.-...|.+||..-- +.+.|..
T Consensus 15 ~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL-nlDLW~lY 92 (656)
T KOG1914|consen 15 ENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL-NLDLWKLY 92 (656)
T ss_pred cCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-hHhHHHHH
Confidence 3688899999998887776 999999999999999999999999999999999999999999999987532 2444432
Q ss_pred HHHHHHHccCHHHHHHH----HHHHHh---hCCCCHHHHHHHHHHHH
Q 024419 81 KGCILEAMEQYDDALSA----FQTALQ---YNPQSAEVSRKIKRVSQ 120 (268)
Q Consensus 81 la~~~~~~~~~~~A~~~----~~~~l~---~~p~~~~~~~~l~~~~~ 120 (268)
+..+....++...+.+. |+=++. .++....+|......+.
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~ 139 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLE 139 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHH
Confidence 33444445554444333 333332 36666777776666544
No 347
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=92.92 E-value=0.62 Score=37.43 Aligned_cols=55 Identities=15% Similarity=0.062 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHH
Q 024419 77 GYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV 131 (268)
Q Consensus 77 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 131 (268)
.+...+..|...|.+.+|++..+++++++|-+...+..+..++...|+.-.+...
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~kh 335 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKH 335 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhH
Confidence 3455677888999999999999999999999999999999999999886666544
No 348
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=92.75 E-value=2.6 Score=35.54 Aligned_cols=101 Identities=15% Similarity=0.061 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-Ch-HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-----CHHHHHHH
Q 024419 9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPS-NP-TLFSNRAAAFLHLVKLNKALADAETTISLNPQ-----WEKGYFRK 81 (268)
Q Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~-~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~l 81 (268)
+++.....+.+.|-+..|.+..+-.+.+||. |+ .+++.+-....+.++++--+..++........ -+..-+..
T Consensus 105 al~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~ 184 (360)
T PF04910_consen 105 ALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSI 184 (360)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHH
Confidence 5667778888999999999999999999998 65 35555556667778888777777776553221 23456778
Q ss_pred HHHHHHccCH---------------HHHHHHHHHHHhhCCCCH
Q 024419 82 GCILEAMEQY---------------DDALSAFQTALQYNPQSA 109 (268)
Q Consensus 82 a~~~~~~~~~---------------~~A~~~~~~~l~~~p~~~ 109 (268)
+.+++..++- +.|...+.+|+...|.-.
T Consensus 185 aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl 227 (360)
T PF04910_consen 185 ALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVL 227 (360)
T ss_pred HHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHH
Confidence 8888888888 899999999999988543
No 349
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=92.70 E-value=5 Score=33.14 Aligned_cols=95 Identities=9% Similarity=-0.024 Sum_probs=70.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhC------------------
Q 024419 10 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLN------------------ 71 (268)
Q Consensus 10 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------------------ 71 (268)
-..+-.......+..+-|..-..|++++|..+.++..++.-- ..-..+|...++++++.-
T Consensus 187 e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~d 264 (556)
T KOG3807|consen 187 EDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHE 264 (556)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchh
Confidence 345556667778888899999999999999999998887432 233456666776666531
Q ss_pred -----CCCH--HHHHHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 024419 72 -----PQWE--KGYFRKGCILEAMEQYDDALSAFQTALQYNP 106 (268)
Q Consensus 72 -----p~~~--~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p 106 (268)
..++ ....++++|-.++|+..+|++.++...+-.|
T Consensus 265 a~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 265 AQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred hhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 1122 2345689999999999999999999888777
No 350
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=92.62 E-value=0.45 Score=23.79 Aligned_cols=28 Identities=25% Similarity=0.304 Sum_probs=16.1
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024419 90 QYDDALSAFQTALQYNPQSAEVSRKIKR 117 (268)
Q Consensus 90 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 117 (268)
+++.+...|++++...|.++..|.....
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 4555566666666666666665554443
No 351
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=92.54 E-value=4.2 Score=32.95 Aligned_cols=103 Identities=13% Similarity=0.037 Sum_probs=78.9
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc----CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----
Q 024419 16 EFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHL----VKLNKALADAETTISLNPQWEKGYFRKGCILEA---- 87 (268)
Q Consensus 16 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---- 87 (268)
.....+++..|+..+..+-.. .+......++.+|..- .+..+|+..|+.+ .+..++.+.+.+|.+|..
T Consensus 50 ~~~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~--a~~g~~~a~~~lg~~~~~G~gv 125 (292)
T COG0790 50 GSAYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCA--AADGLAEALFNLGLMYANGRGV 125 (292)
T ss_pred cccccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHH--hhcccHHHHHhHHHHHhcCCCc
Confidence 345778999999999998873 3347888889988875 4688899999944 455678899999999988
Q ss_pred ccCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHH
Q 024419 88 MEQYDDALSAFQTALQYNPQS-AEVSRKIKRVSQLA 122 (268)
Q Consensus 88 ~~~~~~A~~~~~~~l~~~p~~-~~~~~~l~~~~~~~ 122 (268)
..+..+|...|+++.+..-.. ..+...++..+..-
T Consensus 126 ~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g 161 (292)
T COG0790 126 PLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSG 161 (292)
T ss_pred ccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcC
Confidence 458999999999998874433 34466777766553
No 352
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=92.33 E-value=1.5 Score=37.83 Aligned_cols=97 Identities=19% Similarity=0.237 Sum_probs=64.3
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHH
Q 024419 16 EFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDAL 95 (268)
Q Consensus 16 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~ 95 (268)
.....|+.-.|-+...-++...|.++..-...+.+...+|.|++|.....-+-.+-..-..+...+-.....+|+++.|.
T Consensus 298 k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 298 KQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred HHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence 34566888888888888888888888888888888888888888877765544432222333344444555666666666
Q ss_pred HHHHHHHhhCCCCHHHH
Q 024419 96 SAFQTALQYNPQSAEVS 112 (268)
Q Consensus 96 ~~~~~~l~~~p~~~~~~ 112 (268)
..-.-.+.-.-+++++.
T Consensus 378 s~a~~~l~~eie~~ei~ 394 (831)
T PRK15180 378 STAEMMLSNEIEDEEVL 394 (831)
T ss_pred HHHHHHhccccCChhhe
Confidence 66666665544444443
No 353
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.19 E-value=8 Score=34.35 Aligned_cols=101 Identities=16% Similarity=0.084 Sum_probs=75.1
Q ss_pred cCCHHHHHHHHHHHHhc------------CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh-----CC----------
Q 024419 20 AGNYLKAAALYTQAIKQ------------DPSNPTLFSNRAAAFLHLVKLNKALADAETTISL-----NP---------- 72 (268)
Q Consensus 20 ~~~~~~A~~~~~~al~~------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p---------- 72 (268)
...|++|-..|.-++.. .|.+...+..++.+...+|+.+-|....+++|-. +|
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 45678888888877765 4556788999999999999999888887777632 22
Q ss_pred ------CC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHH
Q 024419 73 ------QW---EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQ-SAEVSRKIKRVSQ 120 (268)
Q Consensus 73 ------~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~ 120 (268)
.| ..+.+..-..+.+.|-+..|.+.++-.++++|. +|.+...+-.++.
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~A 388 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYA 388 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHH
Confidence 22 223344445566779999999999999999998 8877666666554
No 354
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=92.15 E-value=0.47 Score=23.71 Aligned_cols=27 Identities=22% Similarity=0.394 Sum_probs=14.0
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHHH
Q 024419 22 NYLKAAALYTQAIKQDPSNPTLFSNRA 48 (268)
Q Consensus 22 ~~~~A~~~~~~al~~~p~~~~~~~~~a 48 (268)
+++.|...|++++...|.++.+|...+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 445555555555555555555554443
No 355
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=91.98 E-value=0.63 Score=40.08 Aligned_cols=105 Identities=17% Similarity=0.193 Sum_probs=81.7
Q ss_pred hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024419 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC 83 (268)
Q Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 83 (268)
|..+.-....+.+....|+|+.|......+-..-.....+..-+-.-...+|++++|.....-.+.-.-..+++..--|.
T Consensus 320 ~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~ 399 (831)
T PRK15180 320 QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAG 399 (831)
T ss_pred CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecc
Confidence 44455556678888899999999998877766544444444445566778999999999988888776677777766677
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCC
Q 024419 84 ILEAMEQYDDALSAFQTALQYNPQS 108 (268)
Q Consensus 84 ~~~~~~~~~~A~~~~~~~l~~~p~~ 108 (268)
.-.++|-+++|...+++.+.++|..
T Consensus 400 sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 400 SADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred cHHHHhHHHHHHHHHHHHhccCChh
Confidence 7788899999999999999998854
No 356
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=91.94 E-value=8 Score=34.39 Aligned_cols=109 Identities=15% Similarity=0.005 Sum_probs=47.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHH---HHHHHHhh--CCC-CHHHHHHHHHH
Q 024419 11 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALA---DAETTISL--NPQ-WEKGYFRKGCI 84 (268)
Q Consensus 11 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~---~~~~al~~--~p~-~~~~~~~la~~ 84 (268)
...+..--.+|++..|...+++..+..|+...+-........+.|+.+.+.. .+.....- ++. ....+...+..
T Consensus 370 L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~ 449 (577)
T KOG1258|consen 370 LLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARL 449 (577)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHH
Confidence 3333344444555555555555555555555544444445555555554442 11111110 111 12223333322
Q ss_pred -HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024419 85 -LEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVS 119 (268)
Q Consensus 85 -~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 119 (268)
+.-.++.+.|...+.+++...|.+...+..+..+.
T Consensus 450 ~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~ 485 (577)
T KOG1258|consen 450 RYKIREDADLARIILLEANDILPDCKVLYLELIRFE 485 (577)
T ss_pred HHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHH
Confidence 22234555555555555555555555555444443
No 357
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=91.90 E-value=3.3 Score=31.56 Aligned_cols=72 Identities=14% Similarity=0.091 Sum_probs=53.5
Q ss_pred CHHHHHHHHHHHHhcCC--CChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHccCHHHHH
Q 024419 22 NYLKAAALYTQAIKQDP--SNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ----WEKGYFRKGCILEAMEQYDDAL 95 (268)
Q Consensus 22 ~~~~A~~~~~~al~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~~~~~~A~ 95 (268)
.-++|...|-++-. .| ++++..+.+|..|. ..+.++|+..+.+++++.+. +++.+..|+.++...|+++.|-
T Consensus 121 ~d~~A~~~fL~~E~-~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEG-TPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcC-CCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 34556666654332 23 45677777777665 77889999999999988543 5889999999999999998873
No 358
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=91.60 E-value=5.8 Score=35.49 Aligned_cols=88 Identities=15% Similarity=0.098 Sum_probs=72.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHH
Q 024419 15 NEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDA 94 (268)
Q Consensus 15 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A 94 (268)
..+-+++..+.+....+.-+.-...+....+..+..+-..++.++|-.+|++.+..+|+ +.++..|..+.+.|-..+|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 93 (578)
T PRK15490 16 LTLKQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDA 93 (578)
T ss_pred HHHHHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHH
Confidence 34445667778887877777666677788888999999999999999999999999999 6788999999999999999
Q ss_pred HHHHHHHHhhCCC
Q 024419 95 LSAFQTALQYNPQ 107 (268)
Q Consensus 95 ~~~~~~~l~~~p~ 107 (268)
...++ ++.|.
T Consensus 94 ~~~~~---~~~~~ 103 (578)
T PRK15490 94 QLILK---KVSNG 103 (578)
T ss_pred HHHHH---HhCcc
Confidence 88877 44454
No 359
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=91.53 E-value=0.44 Score=40.45 Aligned_cols=61 Identities=18% Similarity=0.186 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHH-------H-hhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 024419 43 LFSNRAAAFLHLVKLNKALADAETT-------I-SLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQ 103 (268)
Q Consensus 43 ~~~~~a~~~~~~~~~~~A~~~~~~a-------l-~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~ 103 (268)
+...+.+++.-+|+|..|++..+.. . +.-+-++..++..|-+|..+++|.+|+..|..++-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888899999998876433 1 11234677889999999999999999999998873
No 360
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=91.25 E-value=21 Score=37.32 Aligned_cols=84 Identities=21% Similarity=0.211 Sum_probs=58.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH-HHHHHc
Q 024419 10 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG-CILEAM 88 (268)
Q Consensus 10 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la-~~~~~~ 88 (268)
+.+.-......|++..|..+|+++++.+|+....+...-.+....|.++..+.+.+-...-.++..+-+..+| .+-+..
T Consensus 1452 l~~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l 1531 (2382)
T KOG0890|consen 1452 LYQQILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRL 1531 (2382)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhh
Confidence 3444555667899999999999999999998877777777778888888887776666655555444444443 233444
Q ss_pred cCHHH
Q 024419 89 EQYDD 93 (268)
Q Consensus 89 ~~~~~ 93 (268)
++++.
T Consensus 1532 ~qwD~ 1536 (2382)
T KOG0890|consen 1532 SQWDL 1536 (2382)
T ss_pred cchhh
Confidence 44443
No 361
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=91.23 E-value=6.3 Score=35.95 Aligned_cols=27 Identities=15% Similarity=0.325 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHH
Q 024419 75 EKGYFRKGCILEAMEQYDDALSAFQTA 101 (268)
Q Consensus 75 ~~~~~~la~~~~~~~~~~~A~~~~~~~ 101 (268)
-.++..+|..+..+..+++|.++|.+.
T Consensus 796 e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 796 EDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356777777777777777777777665
No 362
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=91.06 E-value=0.52 Score=40.00 Aligned_cols=60 Identities=15% Similarity=0.144 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc---------CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 024419 9 SLKDKGNEFFKAGNYLKAAALYTQAIKQ---------DPSNPTLFSNRAAAFLHLVKLNKALADAETTIS 69 (268)
Q Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~---------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 69 (268)
++..+.+++...|||..|++..+.. ++ .+-+..+++..|-||+.+++|.+|++.|...+-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888999999999997653 22 223467899999999999999999999998875
No 363
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=90.94 E-value=3.9 Score=32.45 Aligned_cols=77 Identities=18% Similarity=0.072 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhcCCCC------hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC--C----CHHHHHHHHHHHHHccCH
Q 024419 24 LKAAALYTQAIKQDPSN------PTLFSNRAAAFLHLVKLNKALADAETTISLNP--Q----WEKGYFRKGCILEAMEQY 91 (268)
Q Consensus 24 ~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~----~~~~~~~la~~~~~~~~~ 91 (268)
...|+.+++|....... ..+...+|.-|+..|++++|++.|+.+...-- . ...+...+..|....|+.
T Consensus 155 ~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~ 234 (247)
T PF11817_consen 155 KLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDV 234 (247)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCH
Confidence 34555555555543221 23444566677777777777777776654321 1 134455566666666666
Q ss_pred HHHHHHHHH
Q 024419 92 DDALSAFQT 100 (268)
Q Consensus 92 ~~A~~~~~~ 100 (268)
++.+.+.-+
T Consensus 235 ~~~l~~~le 243 (247)
T PF11817_consen 235 EDYLTTSLE 243 (247)
T ss_pred HHHHHHHHH
Confidence 665554433
No 364
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=90.76 E-value=2.8 Score=26.35 Aligned_cols=16 Identities=13% Similarity=0.333 Sum_probs=6.8
Q ss_pred HHHHHHHHhhCCCCHH
Q 024419 95 LSAFQTALQYNPQSAE 110 (268)
Q Consensus 95 ~~~~~~~l~~~p~~~~ 110 (268)
++.+.+++...|+++.
T Consensus 33 Ie~L~q~~~~~pD~~~ 48 (75)
T cd02682 33 IEVLSQIVKNYPDSPT 48 (75)
T ss_pred HHHHHHHHHhCCChHH
Confidence 3334444444444433
No 365
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.36 E-value=9.2 Score=35.53 Aligned_cols=162 Identities=14% Similarity=0.097 Sum_probs=81.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHccC
Q 024419 13 KGNEFFKAGNYLKAAALYTQAIKQDPSN-PTLFSNRAAAFLHLVKLNKALADAETTISL-NPQWEKGYFRKGCILEAMEQ 90 (268)
Q Consensus 13 ~g~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~~~ 90 (268)
.-..+++...|+-|+...+. ...++.. ..++...|.-++..|++++|...|-++|.. +|..+--.+ ....+
T Consensus 340 kL~iL~kK~ly~~Ai~LAk~-~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kf------Ldaq~ 412 (933)
T KOG2114|consen 340 KLDILFKKNLYKVAINLAKS-QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKF------LDAQR 412 (933)
T ss_pred HHHHHHHhhhHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHh------cCHHH
Confidence 34456667777777776544 2223322 457777888888999999999999888863 443321111 11112
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhh----hHHHhhhHHHH--------HHHhhhhcCch
Q 024419 91 YDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRS----NVDMVQHLDEF--------KSEMSEKYGAE 158 (268)
Q Consensus 91 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~--------~~~~~~~~~~~ 158 (268)
..+=..+++...+..-.+..--..|-.+|..+++.++-.++..... ..+....+..+ ...+...++.-
T Consensus 413 IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~h 492 (933)
T KOG2114|consen 413 IKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKKH 492 (933)
T ss_pred HHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhccC
Confidence 2222233333333333333333344555666655555444322111 00111111000 01122233443
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhh
Q 024419 159 ECWKHVFSFVVETMETAVKSWHE 181 (268)
Q Consensus 159 ~~~~~~~~~~~~~~~~A~~~~~~ 181 (268)
.....++...+++|++|+.++..
T Consensus 493 e~vl~ille~~~ny~eAl~yi~s 515 (933)
T KOG2114|consen 493 EWVLDILLEDLHNYEEALRYISS 515 (933)
T ss_pred HHHHHHHHHHhcCHHHHHHHHhc
Confidence 44455566678888888888764
No 366
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=90.31 E-value=4.1 Score=31.54 Aligned_cols=70 Identities=20% Similarity=0.233 Sum_probs=59.5
Q ss_pred HHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH---HHHHHHHH
Q 024419 49 AAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE---VSRKIKRV 118 (268)
Q Consensus 49 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~---~~~~l~~~ 118 (268)
..+.+.+..++|+...+.-++.+|.+......+-.++.-.|+|++|..-++-+-++.|+... .|..+-.+
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34667889999999999999999999999989999999999999999999999999998743 44444444
No 367
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=90.26 E-value=0.78 Score=25.49 Aligned_cols=25 Identities=8% Similarity=0.122 Sum_probs=21.3
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHh
Q 024419 79 FRKGCILEAMEQYDDALSAFQTALQ 103 (268)
Q Consensus 79 ~~la~~~~~~~~~~~A~~~~~~~l~ 103 (268)
+.+|.+|..+|+.+.|.+.++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5688889999999999988888884
No 368
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=90.23 E-value=5 Score=34.90 Aligned_cols=100 Identities=12% Similarity=-0.007 Sum_probs=47.9
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHH
Q 024419 16 EFFKAGNYLKAAALYTQAIKQDPSN-PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDA 94 (268)
Q Consensus 16 ~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A 94 (268)
.....++++++..+.... ++-|.- ..-...++..+.++|-++.|+... .+++..+.|| .+.|+.+.|
T Consensus 270 ~av~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeLA---l~lg~L~~A 337 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFV--------TDPDHRFELA---LQLGNLDIA 337 (443)
T ss_dssp HHHHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHHH---HHCT-HHHH
T ss_pred HHHHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhc--------CChHHHhHHH---HhcCCHHHH
Confidence 345667777766666411 122222 233445555666677666665542 3344455444 355666666
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419 95 LSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE 132 (268)
Q Consensus 95 ~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 132 (268)
.+..+ ..+++..|..||......|+.+-|++..
T Consensus 338 ~~~a~-----~~~~~~~W~~Lg~~AL~~g~~~lAe~c~ 370 (443)
T PF04053_consen 338 LEIAK-----ELDDPEKWKQLGDEALRQGNIELAEECY 370 (443)
T ss_dssp HHHCC-----CCSTHHHHHHHHHHHHHTTBHHHHHHHH
T ss_pred HHHHH-----hcCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 44322 2235666777777666666666665553
No 369
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.23 E-value=18 Score=34.79 Aligned_cols=61 Identities=16% Similarity=0.161 Sum_probs=53.7
Q ss_pred CChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 024419 39 SNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQY 104 (268)
Q Consensus 39 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 104 (268)
+.+.+|..+|.+..+.|...+|++.|-++ +++..|...-.+-.+.|.|++=+.++..+-+.
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 45789999999999999999999999765 67778888888999999999999988888765
No 370
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=90.17 E-value=18 Score=37.75 Aligned_cols=116 Identities=16% Similarity=0.130 Sum_probs=88.5
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-CC----------
Q 024419 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLN-PQ---------- 73 (268)
Q Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~---------- 73 (268)
.-++.|.+.|.+....|.++-|-...-.|.+.. -+.+...+|..+.+.|+-..|+..+++.+..+ |+
T Consensus 1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~ 1745 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQ 1745 (2382)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccch
Confidence 447789999999999999999999998888776 57889999999999999999999999999664 22
Q ss_pred C------HHHHHHHHHHHHHccCHH--HHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 024419 74 W------EKGYFRKGCILEAMEQYD--DALSAFQTALQYNPQSAEVSRKIKRVSQLA 122 (268)
Q Consensus 74 ~------~~~~~~la~~~~~~~~~~--~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 122 (268)
. ..+....+.-....++++ +-+..|..+.+.+|.....++.+|..+.+.
T Consensus 1746 ~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kl 1802 (2382)
T KOG0890|consen 1746 SVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKL 1802 (2382)
T ss_pred hhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHH
Confidence 1 122333333333445543 346889999999998888888888655543
No 371
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=90.13 E-value=15 Score=33.70 Aligned_cols=81 Identities=15% Similarity=0.169 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 024419 8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEA 87 (268)
Q Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 87 (268)
.++.++|..+.....|++|.++|...-. .-+...|++....|++- +.....-|++...+-.+|..+..
T Consensus 797 ~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~~ecly~le~f~~L----E~la~~Lpe~s~llp~~a~mf~s 864 (1189)
T KOG2041|consen 797 DAFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQIECLYRLELFGEL----EVLARTLPEDSELLPVMADMFTS 864 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhHHHHHHHHHhhhhH----HHHHHhcCcccchHHHHHHHHHh
Confidence 3555556666655666666666544321 12344555555555442 22333346666677777777777
Q ss_pred ccCHHHHHHHHHH
Q 024419 88 MEQYDDALSAFQT 100 (268)
Q Consensus 88 ~~~~~~A~~~~~~ 100 (268)
.|.-++|.+.|-+
T Consensus 865 vGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 865 VGMCDQAVEAYLR 877 (1189)
T ss_pred hchHHHHHHHHHh
Confidence 7777777766655
No 372
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.87 E-value=6.7 Score=29.29 Aligned_cols=124 Identities=15% Similarity=0.029 Sum_probs=83.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--C--HHHHHHHHH
Q 024419 10 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSN--PTLFSNRAAAFLHLVKLNKALADAETTISLNPQ--W--EKGYFRKGC 83 (268)
Q Consensus 10 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~--~~~~~~la~ 83 (268)
-+.-+..+-..+..++|+.-|...-+..-.+ .-+.+..|.+..+.|+-..|+..|..+-.-.|- - -.+...-|.
T Consensus 61 ~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~ 140 (221)
T COG4649 61 AFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAY 140 (221)
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHH
Confidence 3555666777788888888888777665544 345677788888888888888888877665432 1 234556667
Q ss_pred HHHHccCHHHHHHHHHHHH-hhCCCCHHHHHHHHHHHHHHHHHHHhHHHHh
Q 024419 84 ILEAMEQYDDALSAFQTAL-QYNPQSAEVSRKIKRVSQLAKDKKRAQEVEN 133 (268)
Q Consensus 84 ~~~~~~~~~~A~~~~~~~l-~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 133 (268)
++...|-|++-..-.+..- ..+|-...+...||....+.|++.+|.....
T Consensus 141 lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~ 191 (221)
T COG4649 141 LLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFV 191 (221)
T ss_pred HHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHH
Confidence 7777888877654444432 3345556677777777777788887776543
No 373
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=89.46 E-value=17 Score=33.26 Aligned_cols=108 Identities=16% Similarity=0.041 Sum_probs=76.7
Q ss_pred chHhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCC--h----HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--
Q 024419 3 AEAEEMSLKDKGNEFF-KAGNYLKAAALYTQAIKQDPSN--P----TLFSNRAAAFLHLVKLNKALADAETTISLNPQ-- 73 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~~--~----~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-- 73 (268)
+-.++...+.+|.+++ ...+++.|..++++++.+...+ . .+.+.++.++.+.+... |....+++++.-..
T Consensus 55 p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~ 133 (608)
T PF10345_consen 55 PRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYG 133 (608)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccC
Confidence 4467888899999998 7789999999999998886442 2 33445678888887777 99999999886443
Q ss_pred --CHHHHHHHH--HHHHHccCHHHHHHHHHHHHhhC--CCCHHH
Q 024419 74 --WEKGYFRKG--CILEAMEQYDDALSAFQTALQYN--PQSAEV 111 (268)
Q Consensus 74 --~~~~~~~la--~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~ 111 (268)
.....+++- ......+++..|++.++.+.... +.++.+
T Consensus 134 ~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~ 177 (608)
T PF10345_consen 134 HSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV 177 (608)
T ss_pred chhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH
Confidence 222223332 22323379999999999998876 455443
No 374
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=89.29 E-value=1.1 Score=24.92 Aligned_cols=25 Identities=24% Similarity=0.227 Sum_probs=22.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHh
Q 024419 45 SNRAAAFLHLVKLNKALADAETTIS 69 (268)
Q Consensus 45 ~~~a~~~~~~~~~~~A~~~~~~al~ 69 (268)
+.+|.+|..+|+.+.|.+.++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5788999999999999999999985
No 375
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=89.24 E-value=2.3 Score=30.52 Aligned_cols=55 Identities=9% Similarity=0.021 Sum_probs=40.4
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHh
Q 024419 74 WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRA 128 (268)
Q Consensus 74 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a 128 (268)
-.+.....+......|++.-|.+....++..+|+|..+....+.++..++...+.
T Consensus 69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~~ 123 (141)
T PF14863_consen 69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSEN 123 (141)
T ss_dssp CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-SS
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhccC
Confidence 3455566777777888899999999999999999998888888888888766543
No 376
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=88.45 E-value=16 Score=31.84 Aligned_cols=94 Identities=17% Similarity=0.037 Sum_probs=62.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Q 024419 10 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAME 89 (268)
Q Consensus 10 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 89 (268)
....+..+.++|-.+.|+..- +++...+.+| .+.|+.+.|.+..+ ..+++.-|.+||......|
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeLA---l~lg~L~~A~~~a~-----~~~~~~~W~~Lg~~AL~~g 361 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFV--------TDPDHRFELA---LQLGNLDIALEIAK-----ELDDPEKWKQLGDEALRQG 361 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHHH---HHCT-HHHHHHHCC-----CCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHhhc--------CChHHHhHHH---HhcCCHHHHHHHHH-----hcCcHHHHHHHHHHHHHcC
Confidence 344556666777777777653 3456666665 78999998887642 2347789999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q 024419 90 QYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKR 127 (268)
Q Consensus 90 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~ 127 (268)
+++-|.++|+++- -+..|.-++...|+.+.
T Consensus 362 ~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~ 391 (443)
T PF04053_consen 362 NIELAEECYQKAK--------DFSGLLLLYSSTGDREK 391 (443)
T ss_dssp BHHHHHHHHHHCT---------HHHHHHHHHHCT-HHH
T ss_pred CHHHHHHHHHhhc--------CccccHHHHHHhCCHHH
Confidence 9999999999873 22334444555554433
No 377
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=88.36 E-value=11 Score=32.02 Aligned_cols=102 Identities=19% Similarity=0.201 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCC-ChHHHHHHHHHHHHcCChHHHHHHHHHHHhh----CCCCHHH
Q 024419 8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQ-----DPS-NPTLFSNRAAAFLHLVKLNKALADAETTISL----NPQWEKG 77 (268)
Q Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~p~~~~~ 77 (268)
..++-....+...|+...--..+...+.. +.. .+...+.+=.+|...+.|++|-....++.-- +...+..
T Consensus 170 k~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY 249 (493)
T KOG2581|consen 170 KLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARY 249 (493)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHH
Confidence 34455555566666655555555444432 222 2344555677888889999998887776521 1234567
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH
Q 024419 78 YFRKGCILEAMEQYDDALSAFQTALQYNPQSA 109 (268)
Q Consensus 78 ~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~ 109 (268)
.+.+|.+..-+++|..|.++|..++...|.+.
T Consensus 250 ~yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 250 LYYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred HHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 78899999999999999999999999999843
No 378
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=87.84 E-value=17 Score=31.46 Aligned_cols=98 Identities=13% Similarity=0.101 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh-----HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 024419 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP-----TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK 81 (268)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 81 (268)
-..+...|.++.+++++.+|...|.+..+.-.+++ +++.++-.--+-+++.+.-....-..-+..|..+....-.
T Consensus 6 ~~llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~ 85 (549)
T PF07079_consen 6 QYLLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFK 85 (549)
T ss_pred HHHHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 34567889999999999999999999987655442 4555555555667777777777777777788888888888
Q ss_pred HHHHHHccCHHHHHHHHHHHHhh
Q 024419 82 GCILEAMEQYDDALSAFQTALQY 104 (268)
Q Consensus 82 a~~~~~~~~~~~A~~~~~~~l~~ 104 (268)
|...++.++|.+|++.+..-...
T Consensus 86 ~L~~Y~~k~~~kal~~ls~w~~~ 108 (549)
T PF07079_consen 86 ALVAYKQKEYRKALQALSVWKEQ 108 (549)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhh
Confidence 99999999999999988877655
No 379
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.43 E-value=7 Score=33.17 Aligned_cols=111 Identities=16% Similarity=0.126 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-------CC-CHH
Q 024419 8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLHLVKLNKALADAETTISLN-------PQ-WEK 76 (268)
Q Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-------p~-~~~ 76 (268)
.++..+|..|..-|+++.|+..|.++-....+. ...+.+.-.+-..+|+|..-.....+|...- +. .+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 467789999999999999999999977765543 3567777778888999988777777776541 11 234
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHH
Q 024419 77 GYFRKGCILEAMEQYDDALSAFQTALQY--------NPQSAEVSRKIKRV 118 (268)
Q Consensus 77 ~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~ 118 (268)
+...-|.+...+++|..|..+|-.+..- .|.+..++-.+..+
T Consensus 231 l~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcAL 280 (466)
T KOG0686|consen 231 LKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCAL 280 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhh
Confidence 5555677777888999998888776432 35556666655443
No 380
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=87.41 E-value=6.4 Score=37.60 Aligned_cols=102 Identities=12% Similarity=0.125 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHc-------CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q 024419 8 MSLKDKGNEFFKA-------GNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFR 80 (268)
Q Consensus 8 ~~~~~~g~~~~~~-------~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 80 (268)
++.+..|-++..+ ..+++|+..|++.-. .|.-+--|.+.|.+|.++|++++-++++.-|++..|.++..-..
T Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (932)
T PRK13184 513 EAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRL 591 (932)
T ss_pred HHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHH
Confidence 3555555555432 257788888877443 56677789999999999999999999999999999988754333
Q ss_pred HHHHHHHc-----cCHHHHHHHHHHHHhhCCCCHH
Q 024419 81 KGCILEAM-----EQYDDALSAFQTALQYNPQSAE 110 (268)
Q Consensus 81 la~~~~~~-----~~~~~A~~~~~~~l~~~p~~~~ 110 (268)
.-.+-.++ .+-..|....--++...|....
T Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (932)
T PRK13184 592 RDHLVYRLHESLYKHRREALVFMLLALWIAPEKIS 626 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence 32222222 2234466667777777776543
No 381
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=87.10 E-value=0.66 Score=38.20 Aligned_cols=76 Identities=14% Similarity=0.069 Sum_probs=64.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024419 11 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILE 86 (268)
Q Consensus 11 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 86 (268)
.+.+.+-+..+++..|+..-..++..++....+++.++..+....++++|++.+..+....|++....-.+..+-.
T Consensus 279 ~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~ 354 (372)
T KOG0546|consen 279 RNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQ 354 (372)
T ss_pred cchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhh
Confidence 4466677788888889888888888899999999999999999999999999999999999998766554444433
No 382
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=86.74 E-value=5.7 Score=31.52 Aligned_cols=61 Identities=16% Similarity=0.183 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------hHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 024419 8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN------PTLFSNRAAAFLHLVKLNKALADAETTI 68 (268)
Q Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al 68 (268)
.....+|..++..|+|++|+.+|+.+....-.. ..++..+..|+...|+.+..+...-+.+
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 345789999999999999999999997654332 4677788999999999998887665443
No 383
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=86.68 E-value=12 Score=30.33 Aligned_cols=114 Identities=14% Similarity=0.143 Sum_probs=77.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCC--ChHHHHHHHHHH---HHcCCh----HHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024419 13 KGNEFFKAGNYLKAAALYTQAIKQDPS--NPTLFSNRAAAF---LHLVKL----NKALADAETTISLNPQWEKGYFRKGC 83 (268)
Q Consensus 13 ~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~a~~~---~~~~~~----~~A~~~~~~al~~~p~~~~~~~~la~ 83 (268)
....+...++|++=.+.+.+..+...+ ..+..+..+... +.+... ..-...++.-++..|+..-++..+|.
T Consensus 6 ~ir~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~ 85 (277)
T PF13226_consen 6 DIRELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGM 85 (277)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHH
Confidence 456678889999999999888765333 122112222211 122211 13556666677889999999988888
Q ss_pred HHHHcc----------------------CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q 024419 84 ILEAME----------------------QYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKK 126 (268)
Q Consensus 84 ~~~~~~----------------------~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~ 126 (268)
.+.... -.+.|...+.+++.++|....+...+-.+-...|+.+
T Consensus 86 ~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP~ 150 (277)
T PF13226_consen 86 YWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINISAYFGEPD 150 (277)
T ss_pred HHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCch
Confidence 877542 3467889999999999999999988887776666544
No 384
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=86.47 E-value=2.6 Score=25.91 Aligned_cols=29 Identities=41% Similarity=0.529 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 024419 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIK 35 (268)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 35 (268)
+..+...|...-..|++++|+.+|.+++.
T Consensus 5 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 5 AIELIKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33445555555556666666666555543
No 385
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=86.16 E-value=6.4 Score=24.76 Aligned_cols=11 Identities=9% Similarity=0.093 Sum_probs=5.1
Q ss_pred HHHhhCCCCHH
Q 024419 66 TTISLNPQWEK 76 (268)
Q Consensus 66 ~al~~~p~~~~ 76 (268)
+++...|+.+.
T Consensus 38 q~~~~~pD~~~ 48 (75)
T cd02682 38 QIVKNYPDSPT 48 (75)
T ss_pred HHHHhCCChHH
Confidence 33344555544
No 386
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=85.22 E-value=28 Score=31.81 Aligned_cols=91 Identities=20% Similarity=0.138 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CCC-------------------hHHHHHHHHHHHHcCChHHHHH
Q 024419 9 SLKDKGNEFFKAGNYLKAAALYTQAIKQD-------PSN-------------------PTLFSNRAAAFLHLVKLNKALA 62 (268)
Q Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-------p~~-------------------~~~~~~~a~~~~~~~~~~~A~~ 62 (268)
.++--|......+..+.|.+++.++++.- |.. ..+.+..+.+.+-.+++..|..
T Consensus 303 ~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~ 382 (608)
T PF10345_consen 303 VYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQ 382 (608)
T ss_pred HHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 34445666677777767777777776541 111 1334567888889999999999
Q ss_pred HHHHHHhhC---CC------CHHHHHHHHHHHHHccCHHHHHHHHH
Q 024419 63 DAETTISLN---PQ------WEKGYFRKGCILEAMEQYDDALSAFQ 99 (268)
Q Consensus 63 ~~~~al~~~---p~------~~~~~~~la~~~~~~~~~~~A~~~~~ 99 (268)
....+.... |. .+..++..|..+...|+.+.|...|.
T Consensus 383 ~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 383 ELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 888777653 22 36778889999999999999999998
No 387
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=84.95 E-value=35 Score=32.19 Aligned_cols=122 Identities=18% Similarity=0.056 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC----CC--H
Q 024419 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN-----PTLFSNRAAAFLHLVKLNKALADAETTISLNP----QW--E 75 (268)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p----~~--~ 75 (268)
++..-.+|.+....|++++|++..+.++..-|.+ ..+....|.+..-.|++++|......+.+..- .. .
T Consensus 458 ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~ 537 (894)
T COG2909 458 AEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLAL 537 (894)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHH
Confidence 3444567788889999999999999999987765 46788899999999999999999999888732 22 2
Q ss_pred HHHHHHHHHHHHccC--HHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHHHHHHHh
Q 024419 76 KGYFRKGCILEAMEQ--YDDALSAFQTALQY----NPQSAEVSRKIKRVSQLAKDKKRA 128 (268)
Q Consensus 76 ~~~~~la~~~~~~~~--~~~A~~~~~~~l~~----~p~~~~~~~~l~~~~~~~~~~~~a 128 (268)
.+....+.++..+|+ +++....|...-.. .|-+.......+.++...-..+.+
T Consensus 538 ~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~ 596 (894)
T COG2909 538 WSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLA 596 (894)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhh
Confidence 344556788888884 33334444443322 344444444444444433334443
No 388
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=84.94 E-value=2.5 Score=26.63 Aligned_cols=14 Identities=7% Similarity=0.024 Sum_probs=5.8
Q ss_pred CChHHHHHHHHHHH
Q 024419 55 VKLNKALADAETTI 68 (268)
Q Consensus 55 ~~~~~A~~~~~~al 68 (268)
|++++|+..|..++
T Consensus 20 gny~eA~~lY~~al 33 (75)
T cd02680 20 GNAEEAIELYTEAV 33 (75)
T ss_pred hhHHHHHHHHHHHH
Confidence 44444444444433
No 389
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=84.76 E-value=9.6 Score=32.22 Aligned_cols=41 Identities=15% Similarity=0.067 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 024419 59 KALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQ 99 (268)
Q Consensus 59 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 99 (268)
+|+..++.++..+|.|....+.+..+|...|-.+.|...|.
T Consensus 201 ~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~ 241 (365)
T PF09797_consen 201 QAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYE 241 (365)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44444444555555555555555555555555554444443
No 390
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=83.83 E-value=10 Score=26.45 Aligned_cols=56 Identities=16% Similarity=0.061 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------------hHHHHHHHHHHHHcCChHHHHHHH
Q 024419 9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---------------PTLFSNRAAAFLHLVKLNKALADA 64 (268)
Q Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~~ 64 (268)
-+..+|+..++.+++-.++-.|++|+.+..+- +..-.++|..+..+|+.+-.++++
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYL 73 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYL 73 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHH
Confidence 35567888888888888888888888752110 123445666666666666655555
No 391
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.78 E-value=30 Score=30.64 Aligned_cols=66 Identities=8% Similarity=0.009 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhh------CCC-CHHHHHHHHHHHHHccC-HHHHHHHHHHHHhhCCCC
Q 024419 43 LFSNRAAAFLHLVKLNKALADAETTISL------NPQ-WEKGYFRKGCILEAMEQ-YDDALSAFQTALQYNPQS 108 (268)
Q Consensus 43 ~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p~-~~~~~~~la~~~~~~~~-~~~A~~~~~~~l~~~p~~ 108 (268)
-++.+|.++..+|+...|..+|..+++. +|- .|.+++.+|..++.++. ..++...+.+|-....+.
T Consensus 451 k~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 451 KYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 4566799999999999999999888732 111 36789999999999988 888999988887766443
No 392
>PF12854 PPR_1: PPR repeat
Probab=83.54 E-value=3.6 Score=21.18 Aligned_cols=26 Identities=4% Similarity=0.116 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHH
Q 024419 41 PTLFSNRAAAFLHLVKLNKALADAET 66 (268)
Q Consensus 41 ~~~~~~~a~~~~~~~~~~~A~~~~~~ 66 (268)
...|..+-..|.+.|+.++|++.+++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 34455555555566666666555543
No 393
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=82.90 E-value=29 Score=29.62 Aligned_cols=62 Identities=15% Similarity=0.189 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh--HHHHHHHHH--HHHcCChHHHHHHHHHHHhh
Q 024419 9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP--TLFSNRAAA--FLHLVKLNKALADAETTISL 70 (268)
Q Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~a~~--~~~~~~~~~A~~~~~~al~~ 70 (268)
.....+..++..++|..|...++.....-|.+. ..+..++.+ +....++.+|.+.+++.+..
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 456788889999999999999999998533333 345555444 45678999999999988775
No 394
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=82.67 E-value=3.3 Score=26.15 Aligned_cols=17 Identities=24% Similarity=0.376 Sum_probs=9.6
Q ss_pred HccCHHHHHHHHHHHHh
Q 024419 87 AMEQYDDALSAFQTALQ 103 (268)
Q Consensus 87 ~~~~~~~A~~~~~~~l~ 103 (268)
..|+|++|+.+|..+++
T Consensus 18 ~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 18 QEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HccCHHHHHHHHHHHHH
Confidence 45566666655555553
No 395
>PF12854 PPR_1: PPR repeat
Probab=82.47 E-value=4.9 Score=20.65 Aligned_cols=27 Identities=15% Similarity=-0.066 Sum_probs=22.9
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHH
Q 024419 74 WEKGYFRKGCILEAMEQYDDALSAFQT 100 (268)
Q Consensus 74 ~~~~~~~la~~~~~~~~~~~A~~~~~~ 100 (268)
+...|..+-..+-+.|+.++|.+.|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 455788888999999999999998875
No 396
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=82.45 E-value=17 Score=29.16 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=19.9
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 024419 5 AEEMSLKDKGNEFFKAGNYLKAAALYT 31 (268)
Q Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~ 31 (268)
.+++-+...|..+++.|++.+|..+|-
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 467778889999999999888887763
No 397
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=82.30 E-value=4.3 Score=25.65 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 024419 9 SLKDKGNEFFKAGNYLKAAALYTQAIK 35 (268)
Q Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 35 (268)
.+..+|-.+-..|+|++|+.+|..+++
T Consensus 8 ~~a~~Ave~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 8 QFARLAVQRDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344444445555555555555555443
No 398
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=81.35 E-value=5.2 Score=25.31 Aligned_cols=26 Identities=19% Similarity=0.378 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024419 9 SLKDKGNEFFKAGNYLKAAALYTQAI 34 (268)
Q Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al 34 (268)
.+...|..+-..|+|++|+.+|.+++
T Consensus 8 ~l~~~Ave~D~~g~y~eAl~~Y~~ai 33 (77)
T cd02683 8 EVLKRAVELDQEGRFQEALVCYQEGI 33 (77)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34444444444455555554444433
No 399
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=80.73 E-value=18 Score=25.79 Aligned_cols=55 Identities=5% Similarity=-0.108 Sum_probs=30.8
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 024419 50 AFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQY 104 (268)
Q Consensus 50 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 104 (268)
.....|+-++--+.+....+.+..++..++.+|.+|.+.|+..+|-+.+.+|-+.
T Consensus 95 ~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 95 ILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3445566555555555555544556677777777777777777777777776543
No 400
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=80.47 E-value=18 Score=25.58 Aligned_cols=50 Identities=16% Similarity=0.200 Sum_probs=38.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHH
Q 024419 15 NEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAE 65 (268)
Q Consensus 15 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~ 65 (268)
..+...+.....+.+++.++..++.++..+..+..+|.+. +..+.+..++
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~ 64 (140)
T smart00299 15 ELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLD 64 (140)
T ss_pred HHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHH
Confidence 3445568899999999999999888888888888888765 4455566655
No 401
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=80.19 E-value=20 Score=29.00 Aligned_cols=96 Identities=8% Similarity=0.064 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc--CChHHHHHHHHHHHhhCCCCHHHHHHHHHHH------HHccCHHHH
Q 024419 23 YLKAAALYTQAIKQDPSNPTLFSNRAAAFLHL--VKLNKALADAETTISLNPQWEKGYFRKGCIL------EAMEQYDDA 94 (268)
Q Consensus 23 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~la~~~------~~~~~~~~A 94 (268)
.+.-+.....+++-+|++-.+|..+-.|+..- .++..-...-++.+..||.|.-+|...-.+. ..-..+..-
T Consensus 90 ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e 169 (328)
T COG5536 90 LDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHE 169 (328)
T ss_pred hhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHH
Confidence 35567778889999999999999999988765 6677777788999999999877765544343 333344445
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHH
Q 024419 95 LSAFQTALQYNPQSAEVSRKIKRV 118 (268)
Q Consensus 95 ~~~~~~~l~~~p~~~~~~~~l~~~ 118 (268)
.++-..++..|+.|..+|...-..
T Consensus 170 ~eytt~~I~tdi~N~SaW~~r~~~ 193 (328)
T COG5536 170 LEYTTSLIETDIYNNSAWHHRYIW 193 (328)
T ss_pred HHhHHHHHhhCCCChHHHHHHHHH
Confidence 666677788899999998876443
No 402
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=80.14 E-value=4.4 Score=25.80 Aligned_cols=33 Identities=12% Similarity=0.315 Sum_probs=18.6
Q ss_pred ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 024419 56 KLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQ 103 (268)
Q Consensus 56 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~ 103 (268)
-|++|.....++|..+ ..|+.++|+.+|++++.
T Consensus 4 ~~~~A~~~I~kaL~~d---------------E~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 4 YYKQAFEEISKALRAD---------------EWGDKEQALAHYRKGLR 36 (79)
T ss_pred HHHHHHHHHHHHhhhh---------------hcCCHHHHHHHHHHHHH
Confidence 3455555555555544 34566666666666654
No 403
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=79.82 E-value=41 Score=29.36 Aligned_cols=149 Identities=11% Similarity=0.001 Sum_probs=0.0
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH
Q 024419 30 YTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSA 109 (268)
Q Consensus 30 ~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~ 109 (268)
++.-++-+|++...|+.+-.-+-.+|.+++-.+.|++...-.|-.+.+|...-..-....+|..-...|.++|...-+ .
T Consensus 31 LRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~-l 109 (660)
T COG5107 31 LRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN-L 109 (660)
T ss_pred HHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc-H
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHHHH---------HHHHHHHHHhhh
Q 024419 110 EVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFV---------VETMETAVKSWH 180 (268)
Q Consensus 110 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~A~~~~~ 180 (268)
+.|...-..-...+..-....-...-+..+.......+.+. .+..+..-+.+... +++++.....|.
T Consensus 110 dLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~----s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ 185 (660)
T COG5107 110 DLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQ----SENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYM 185 (660)
T ss_pred hHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhccccccc----ccchHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Q ss_pred hhh
Q 024419 181 ETS 183 (268)
Q Consensus 181 ~~~ 183 (268)
+++
T Consensus 186 ral 188 (660)
T COG5107 186 RAL 188 (660)
T ss_pred HHH
No 404
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=79.49 E-value=25 Score=29.24 Aligned_cols=95 Identities=20% Similarity=0.219 Sum_probs=61.4
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 024419 22 NYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL--NPQWEKGYFRKGCILEAMEQYDDALSAFQ 99 (268)
Q Consensus 22 ~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 99 (268)
+|..-..+|.-.....| ++.+-.|++.+..+..-...++...+-.... -..+...+--.|..+.++|+.++|...|+
T Consensus 311 DW~~I~aLYdaL~~~ap-SPvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~ayd 389 (415)
T COG4941 311 DWPAIDALYDALEQAAP-SPVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYD 389 (415)
T ss_pred ChHHHHHHHHHHHHhCC-CCeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHH
Confidence 44554555555555444 3445556666666655566666665544432 11234456678999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHH
Q 024419 100 TALQYNPQSAEVSRKIKR 117 (268)
Q Consensus 100 ~~l~~~p~~~~~~~~l~~ 117 (268)
+++.+.++..+.......
T Consensus 390 rAi~La~~~aer~~l~~r 407 (415)
T COG4941 390 RAIALARNAAERAFLRQR 407 (415)
T ss_pred HHHHhcCChHHHHHHHHH
Confidence 999999887766554443
No 405
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=78.83 E-value=17 Score=24.57 Aligned_cols=24 Identities=17% Similarity=-0.008 Sum_probs=11.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhh
Q 024419 47 RAAAFLHLVKLNKALADAETTISL 70 (268)
Q Consensus 47 ~a~~~~~~~~~~~A~~~~~~al~~ 70 (268)
.|.+-+..|++..|.+...++-+.
T Consensus 65 ~Gl~al~~G~~~~A~k~~~~a~~~ 88 (108)
T PF07219_consen 65 RGLIALAEGDWQRAEKLLAKAAKL 88 (108)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhc
Confidence 344444455555555555555443
No 406
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=78.69 E-value=38 Score=28.32 Aligned_cols=173 Identities=16% Similarity=0.170 Sum_probs=99.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc----CC--CChHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-----CCCHHH--H
Q 024419 12 DKGNEFFKAGNYLKAAALYTQAIKQ----DP--SNPTLFSNRAAAFLHLVKLNKALADAETTISLN-----PQWEKG--Y 78 (268)
Q Consensus 12 ~~g~~~~~~~~~~~A~~~~~~al~~----~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~--~ 78 (268)
.+...|+..++|.+|+......+.. |. .-.+++..-..+|+...+..+|...+..|-... |.-..+ =
T Consensus 133 rli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lD 212 (411)
T KOG1463|consen 133 RLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLD 212 (411)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHH
Confidence 4677889999999999988877653 32 335677778889999999999988887665431 221122 2
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhCC---CCHHHHHHHH---HHHHHHHHHHHhHHHHhhhhhHHHh-hhHHHHHHHh
Q 024419 79 FRKGCILEAMEQYDDALSAFQTALQYNP---QSAEVSRKIK---RVSQLAKDKKRAQEVENIRSNVDMV-QHLDEFKSEM 151 (268)
Q Consensus 79 ~~la~~~~~~~~~~~A~~~~~~~l~~~p---~~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 151 (268)
.+-|..+....+|..|-.+|-.+++=.. ++..+...|. -+...++..++...+...+..+... +.+..+. .+
T Consensus 213 LqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~Amk-av 291 (411)
T KOG1463|consen 213 LQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMK-AV 291 (411)
T ss_pred HhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHH-HH
Confidence 3336667777899999999999886422 2233333332 2233344444443332111111100 1111110 00
Q ss_pred hhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhHHHHHhh
Q 024419 152 SEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKVYFLLD 194 (268)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 194 (268)
... .-...+.+|+.|+..|+.-+.-+|-+...++
T Consensus 292 AeA---------~~nRSLkdF~~AL~~yk~eL~~D~ivr~Hl~ 325 (411)
T KOG1463|consen 292 AEA---------FGNRSLKDFEKALADYKKELAEDPIVRSHLQ 325 (411)
T ss_pred HHH---------hcCCcHHHHHHHHHHhHHHHhcChHHHHHHH
Confidence 000 1122367888888888888877776443333
No 407
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=78.62 E-value=12 Score=28.24 Aligned_cols=48 Identities=19% Similarity=0.147 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 024419 58 NKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNP 106 (268)
Q Consensus 58 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p 106 (268)
...++..++.++..| ++.++..++.++...|+.++|.....++..+.|
T Consensus 128 ~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 128 EAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 455566677777777 577889999999999999999999999999999
No 408
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=78.20 E-value=4.6 Score=19.61 Aligned_cols=21 Identities=10% Similarity=0.178 Sum_probs=9.5
Q ss_pred HHHHHHHcCChHHHHHHHHHH
Q 024419 47 RAAAFLHLVKLNKALADAETT 67 (268)
Q Consensus 47 ~a~~~~~~~~~~~A~~~~~~a 67 (268)
+-.+|.+.|++++|.+.|++.
T Consensus 6 li~~~~~~~~~~~a~~~~~~M 26 (31)
T PF01535_consen 6 LISGYCKMGQFEEALEVFDEM 26 (31)
T ss_pred HHHHHHccchHHHHHHHHHHH
Confidence 334444444444444444443
No 409
>PF13041 PPR_2: PPR repeat family
Probab=77.95 E-value=7.9 Score=21.72 Aligned_cols=29 Identities=10% Similarity=0.080 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 024419 42 TLFSNRAAAFLHLVKLNKALADAETTISL 70 (268)
Q Consensus 42 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 70 (268)
..|..+-..+.+.|++++|.+.|++..+.
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 44555556666666666666666666553
No 410
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.93 E-value=10 Score=30.54 Aligned_cols=51 Identities=16% Similarity=0.169 Sum_probs=44.0
Q ss_pred cCChHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 024419 54 LVKLNKALADAETTISLNPQW----EKGYFRKGCILEAMEQYDDALSAFQTALQY 104 (268)
Q Consensus 54 ~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 104 (268)
..++++|+..|++++++.|.. ..++-++-.+++.+++|++-++.|.+.+..
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTY 94 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTY 94 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 458999999999999999875 467888889999999999999999887753
No 411
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=77.67 E-value=5.6 Score=25.02 Aligned_cols=31 Identities=26% Similarity=0.237 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 024419 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ 36 (268)
Q Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 36 (268)
.+..+...|...-..|+|++|+.+|..+++.
T Consensus 5 kai~Lv~~A~~eD~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 5 RAHFLVTQAFDEDEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHHHHHHhhHhhhHHHHHHHHHHHHHH
Confidence 4556777787788889999999999999875
No 412
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=76.45 E-value=8.6 Score=24.09 Aligned_cols=16 Identities=19% Similarity=0.094 Sum_probs=7.2
Q ss_pred cCChHHHHHHHHHHHh
Q 024419 54 LVKLNKALADAETTIS 69 (268)
Q Consensus 54 ~~~~~~A~~~~~~al~ 69 (268)
.|++++|+.+|.++++
T Consensus 21 ~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 21 AGDYEEALELYKKAIE 36 (77)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 3444444444444443
No 413
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=76.16 E-value=58 Score=29.19 Aligned_cols=90 Identities=18% Similarity=0.193 Sum_probs=54.5
Q ss_pred HHHHHHcC---CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh-----CCCCHHHHHHHHHHH
Q 024419 14 GNEFFKAG---NYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL-----NPQWEKGYFRKGCIL 85 (268)
Q Consensus 14 g~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~ 85 (268)
-..++..| +|.-|+-.+-..-+++|.. .-..++..|.+++.. +..+...|..+|..+
T Consensus 264 Lw~lyd~ghl~~YPmALg~LadLeEi~pt~---------------~r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~ 328 (618)
T PF05053_consen 264 LWLLYDMGHLARYPMALGNLADLEEIDPTP---------------GRPTPLELFNEAISSARTYYNNHHVYPYTYLGGYY 328 (618)
T ss_dssp HHHHHHTTTTTT-HHHHHHHHHHHHHS--T---------------TS--HHHHHHHHHHHHHHHCTT--SHHHHHHHHHH
T ss_pred HHHHHhcCchhhCchhhhhhHhHHhhccCC---------------CCCCHHHHHHHHHHHHHHHhcCCccccceehhhHH
Confidence 33444444 5566666666666666542 234556777777754 445678899999999
Q ss_pred HHccCHHHHHHHHHHHHhh------CCCCHHHHHHHHHH
Q 024419 86 EAMEQYDDALSAFQTALQY------NPQSAEVSRKIKRV 118 (268)
Q Consensus 86 ~~~~~~~~A~~~~~~~l~~------~p~~~~~~~~l~~~ 118 (268)
++.++|.+|+..+-.+-.. ..++.++|..+-.+
T Consensus 329 yR~~~~~eA~~~Wa~aa~Vi~~YnY~reDeEiYKEfleI 367 (618)
T PF05053_consen 329 YRHKRYREALRSWAEAADVIRKYNYSREDEEIYKEFLEI 367 (618)
T ss_dssp HHTT-HHHHHHHHHHHHHHHTTSB--GGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCccHHHHHHHHHHH
Confidence 9999999999988887543 23456666655544
No 414
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=76.14 E-value=9 Score=24.01 Aligned_cols=26 Identities=42% Similarity=0.484 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024419 9 SLKDKGNEFFKAGNYLKAAALYTQAI 34 (268)
Q Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al 34 (268)
.+...|...-..|++++|+.+|.+++
T Consensus 8 ~l~~~Av~~D~~g~y~eA~~~Y~~ai 33 (75)
T cd02678 8 ELVKKAIEEDNAGNYEEALRLYQHAL 33 (75)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444444444455555444444443
No 415
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=76.01 E-value=19 Score=33.32 Aligned_cols=124 Identities=15% Similarity=0.110 Sum_probs=79.7
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------hHHHHHHHHHHH---HcCChHHHHHHHHHHHhhCC-CCH
Q 024419 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN------PTLFSNRAAAFL---HLVKLNKALADAETTISLNP-QWE 75 (268)
Q Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~---~~~~~~~A~~~~~~al~~~p-~~~ 75 (268)
+++...++-..|...++|+.-++..+..-.+ |+. ..+.+..+.++- +.|+-++|+...-.+++.+- -.+
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i-P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI-PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHhC-cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 3556667777788888998888887765544 421 122223333333 34778899998888887653 346
Q ss_pred HHHHHHHHHHHHc---------cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH-HHHhHHH
Q 024419 76 KGYFRKGCILEAM---------EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKD-KKRAQEV 131 (268)
Q Consensus 76 ~~~~~la~~~~~~---------~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~-~~~a~~~ 131 (268)
+.+...|.+|..+ +..+.|++.|+++++..|....- .+++.++...|+ ++...++
T Consensus 279 Dm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sG-IN~atLL~aaG~~Fens~El 343 (1226)
T KOG4279|consen 279 DMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSG-INLATLLRAAGEHFENSLEL 343 (1226)
T ss_pred ceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhcc-ccHHHHHHHhhhhccchHHH
Confidence 6777778887653 45677999999999999964332 345555555543 4444444
No 416
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=75.65 E-value=37 Score=28.10 Aligned_cols=78 Identities=13% Similarity=0.064 Sum_probs=53.0
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh--CCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 024419 27 AALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL--NPQ--WEKGYFRKGCILEAMEQYDDALSAFQTAL 102 (268)
Q Consensus 27 ~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~~l 102 (268)
++++.+--...|+..++++..|.-.+..|+|..|-.++-....+ +|+ +..+..+.-..-.-+.+|+-|++.+.+.-
T Consensus 115 l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~rLr 194 (432)
T KOG2758|consen 115 LQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLTRLR 194 (432)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33444444456777889999999999999999998876555443 332 34444443334556788999998888876
Q ss_pred hh
Q 024419 103 QY 104 (268)
Q Consensus 103 ~~ 104 (268)
+.
T Consensus 195 e~ 196 (432)
T KOG2758|consen 195 EY 196 (432)
T ss_pred HH
Confidence 54
No 417
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=75.64 E-value=4.4 Score=31.67 Aligned_cols=92 Identities=22% Similarity=0.173 Sum_probs=54.1
Q ss_pred HHHcCCHHHHHHHHHHHHhcC---CCC---------hHHHHHHHHHHHHcCCh-HHH-HHHHHHHHhh--CCCCH--HHH
Q 024419 17 FFKAGNYLKAAALYTQAIKQD---PSN---------PTLFSNRAAAFLHLVKL-NKA-LADAETTISL--NPQWE--KGY 78 (268)
Q Consensus 17 ~~~~~~~~~A~~~~~~al~~~---p~~---------~~~~~~~a~~~~~~~~~-~~A-~~~~~~al~~--~p~~~--~~~ 78 (268)
++..|+|+.|++...-||..+ |+. ++-...-+......|.. +-. ...+.....- -|+.+ ..|
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~ 172 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLY 172 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHH
Confidence 357799999999999999974 322 11222233334444542 111 1222222211 13333 445
Q ss_pred HHHHHHHH---------HccCHHHHHHHHHHHHhhCCCC
Q 024419 79 FRKGCILE---------AMEQYDDALSAFQTALQYNPQS 108 (268)
Q Consensus 79 ~~la~~~~---------~~~~~~~A~~~~~~~l~~~p~~ 108 (268)
-..|..+. ..++...|+..++++++++|+.
T Consensus 173 K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 173 KAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred HHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 55566663 4467889999999999999975
No 418
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=75.31 E-value=8.6 Score=19.67 Aligned_cols=16 Identities=19% Similarity=0.314 Sum_probs=6.9
Q ss_pred hHHHHHHHHHHHhhCC
Q 024419 57 LNKALADAETTISLNP 72 (268)
Q Consensus 57 ~~~A~~~~~~al~~~p 72 (268)
++.|...|++.+...|
T Consensus 3 ~dRAR~IyeR~v~~hp 18 (32)
T PF02184_consen 3 FDRARSIYERFVLVHP 18 (32)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 3444444444444443
No 419
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=75.12 E-value=8.2 Score=24.26 Aligned_cols=16 Identities=31% Similarity=0.281 Sum_probs=8.1
Q ss_pred HccCHHHHHHHHHHHH
Q 024419 87 AMEQYDDALSAFQTAL 102 (268)
Q Consensus 87 ~~~~~~~A~~~~~~~l 102 (268)
..|++++|+..|..++
T Consensus 18 ~~g~y~eA~~lY~~al 33 (75)
T cd02684 18 QRGDAAAALSLYCSAL 33 (75)
T ss_pred HhccHHHHHHHHHHHH
Confidence 3455555555555544
No 420
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=75.05 E-value=9.2 Score=26.62 Aligned_cols=28 Identities=29% Similarity=0.533 Sum_probs=14.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 024419 12 DKGNEFFKAGNYLKAAALYTQAIKQDPS 39 (268)
Q Consensus 12 ~~g~~~~~~~~~~~A~~~~~~al~~~p~ 39 (268)
.+|..+...|++++|..+|-+|+...|+
T Consensus 68 ~lGE~L~~~G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 68 QLGEQLLAQGDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 3555555555555555555555555543
No 421
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=74.96 E-value=53 Score=28.17 Aligned_cols=127 Identities=11% Similarity=0.034 Sum_probs=82.1
Q ss_pred HcCChHHHHHHHHHHHhh----CC-----CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC-----CCC-HHHHHHHHH
Q 024419 53 HLVKLNKALADAETTISL----NP-----QWEKGYFRKGCILEAMEQYDDALSAFQTALQYN-----PQS-AEVSRKIKR 117 (268)
Q Consensus 53 ~~~~~~~A~~~~~~al~~----~p-----~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-----p~~-~~~~~~l~~ 117 (268)
...++.+|..+-+..+.- |- -.+..|+.+..+|...|+...-...+...+... ... ......|-+
T Consensus 138 d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr 217 (493)
T KOG2581|consen 138 DQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLR 217 (493)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHH
Confidence 347888888877666542 11 135678889999999999776666665555432 222 334445556
Q ss_pred HHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH
Q 024419 118 VSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK 188 (268)
Q Consensus 118 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 188 (268)
.+..-+.+++|..+.......+... ........++.|.+...+.+|..|.+++-.++...|.
T Consensus 218 ~yL~n~lydqa~~lvsK~~~pe~~s---------nne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 218 NYLHNKLYDQADKLVSKSVYPEAAS---------NNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHhhhHHHHHHHHHhhcccCccccc---------cHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 6767788888876632111111111 1123345577888899999999999999999988886
No 422
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=74.84 E-value=5.2 Score=25.18 Aligned_cols=10 Identities=10% Similarity=-0.150 Sum_probs=4.1
Q ss_pred CChHHHHHHH
Q 024419 55 VKLNKALADA 64 (268)
Q Consensus 55 ~~~~~A~~~~ 64 (268)
|+|++|..+|
T Consensus 20 ~~y~eA~~~Y 29 (75)
T cd02677 20 GDYEAAFEFY 29 (75)
T ss_pred hhHHHHHHHH
Confidence 3444444433
No 423
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.31 E-value=21 Score=30.74 Aligned_cols=96 Identities=18% Similarity=0.164 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC----C-------CChHHHHHHHHHHHHcCCh----------HHHHHHHHHH
Q 024419 9 SLKDKGNEFFKAGNYLKAAALYTQAIKQD----P-------SNPTLFSNRAAAFLHLVKL----------NKALADAETT 67 (268)
Q Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~----p-------~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~a 67 (268)
.++.+|...+....|.+|+.++-.|=+.. | +.+-.-..+-+||+.+.+. ..|.+.|.++
T Consensus 165 g~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~s 244 (568)
T KOG2561|consen 165 GLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERS 244 (568)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhhh
Confidence 45778899999999999998887664432 1 2233344567899988764 3445555444
Q ss_pred HhhC------------CCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 024419 68 ISLN------------PQW---EKGYFRKGCILEAMEQYDDALSAFQTALQY 104 (268)
Q Consensus 68 l~~~------------p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 104 (268)
.--+ |.. ...+..-|.+.+.+|+-++|.++++.+...
T Consensus 245 yGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~ 296 (568)
T KOG2561|consen 245 YGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAK 296 (568)
T ss_pred hhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 3221 221 244556699999999999999999987643
No 424
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=74.20 E-value=29 Score=24.77 Aligned_cols=117 Identities=12% Similarity=0.114 Sum_probs=69.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh------------------HHHHHHHHHH--HHcCChHHHHHHHHHHHhh
Q 024419 11 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNP------------------TLFSNRAAAF--LHLVKLNKALADAETTISL 70 (268)
Q Consensus 11 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~------------------~~~~~~a~~~--~~~~~~~~A~~~~~~al~~ 70 (268)
..-|.-+...|..++.++...+...-.|-+. ..+-.+|..+ ...|+...-+.+|-+.=..
T Consensus 6 LmeAK~~ildG~V~qGveii~k~v~Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~~ 85 (161)
T PF09205_consen 6 LMEAKERILDGDVKQGVEIIEKTVNSSNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRNKL 85 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT--
T ss_pred HHHHHHHHHhchHHHHHHHHHHHcCcCCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcch
Confidence 3456677788999999999888877655322 2233344432 2346777777777544222
Q ss_pred CCCCHHHHHHHHH-HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419 71 NPQWEKGYFRKGC-ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE 132 (268)
Q Consensus 71 ~p~~~~~~~~la~-~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 132 (268)
.-|+.+|. ++...|+-+.=.+.+....+-+..+|+.+..++..|...|...++.++.
T Consensus 86 -----se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell 143 (161)
T PF09205_consen 86 -----SEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELL 143 (161)
T ss_dssp ------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred -----HHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHH
Confidence 23556664 4556666666667777777666778999999999999999998887764
No 425
>PF13041 PPR_2: PPR repeat family
Probab=73.73 E-value=11 Score=21.18 Aligned_cols=30 Identities=20% Similarity=0.334 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 024419 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQ 36 (268)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 36 (268)
...+..+-..+.+.|++++|.+.|++..+.
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 457788889999999999999999999876
No 426
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=72.64 E-value=10 Score=24.09 Aligned_cols=34 Identities=21% Similarity=0.210 Sum_probs=20.8
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 024419 22 NYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL 70 (268)
Q Consensus 22 ~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 70 (268)
.|+.|.++.+++|..+ ..|+.++|+.+|++++..
T Consensus 4 ~~~~A~~~I~kaL~~d---------------E~g~~e~Al~~Y~~gi~~ 37 (79)
T cd02679 4 YYKQAFEEISKALRAD---------------EWGDKEQALAHYRKGLRE 37 (79)
T ss_pred HHHHHHHHHHHHhhhh---------------hcCCHHHHHHHHHHHHHH
Confidence 4566666666666554 346666777777666654
No 427
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=72.20 E-value=13 Score=23.18 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=10.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 024419 11 KDKGNEFFKAGNYLKAAALYTQAI 34 (268)
Q Consensus 11 ~~~g~~~~~~~~~~~A~~~~~~al 34 (268)
...|...-..|++++|+.+|..++
T Consensus 10 ~~~Av~~D~~g~~~~Al~~Y~~a~ 33 (75)
T cd02656 10 IKQAVKEDEDGNYEEALELYKEAL 33 (75)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334444444445554444444443
No 428
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=71.41 E-value=11 Score=18.73 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=12.7
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHH
Q 024419 27 AALYTQAIKQDPSNPTLFSNRAAAF 51 (268)
Q Consensus 27 ~~~~~~al~~~p~~~~~~~~~a~~~ 51 (268)
+++-..++..+|.+..+|..+-.+.
T Consensus 3 l~~~~~~l~~~pknys~W~yR~~ll 27 (31)
T PF01239_consen 3 LEFTKKALEKDPKNYSAWNYRRWLL 27 (31)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcccccHHHHHHHHH
Confidence 3444455555555555555544443
No 429
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=71.29 E-value=25 Score=26.58 Aligned_cols=50 Identities=16% Similarity=0.177 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 024419 23 YLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ 73 (268)
Q Consensus 23 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 73 (268)
.+..++..++.+...| ++.++.+++.++...|+.++|.....++..+-|.
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 4455666677777777 6788999999999999999999999999999993
No 430
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=71.04 E-value=13 Score=23.31 Aligned_cols=16 Identities=13% Similarity=-0.070 Sum_probs=7.5
Q ss_pred cCChHHHHHHHHHHHh
Q 024419 54 LVKLNKALADAETTIS 69 (268)
Q Consensus 54 ~~~~~~A~~~~~~al~ 69 (268)
.|++++|+.+|..+++
T Consensus 19 ~g~y~eA~~lY~~ale 34 (75)
T cd02684 19 RGDAAAALSLYCSALQ 34 (75)
T ss_pred hccHHHHHHHHHHHHH
Confidence 4444444444444443
No 431
>PF15469 Sec5: Exocyst complex component Sec5
Probab=70.53 E-value=39 Score=25.26 Aligned_cols=24 Identities=13% Similarity=0.178 Sum_probs=13.8
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHH
Q 024419 90 QYDDALSAFQTALQYNPQSAEVSR 113 (268)
Q Consensus 90 ~~~~A~~~~~~~l~~~p~~~~~~~ 113 (268)
..++........++++|+.-++|.
T Consensus 154 s~~~~~~~i~~Ll~L~~~~dPi~~ 177 (182)
T PF15469_consen 154 SQEEFLKLIRKLLELNVEEDPIWY 177 (182)
T ss_pred CHHHHHHHHHHHHhCCCCCCHHHH
Confidence 455556666666666665544443
No 432
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=70.06 E-value=15 Score=22.42 Aligned_cols=11 Identities=18% Similarity=-0.040 Sum_probs=4.8
Q ss_pred cCChHHHHHHH
Q 024419 54 LVKLNKALADA 64 (268)
Q Consensus 54 ~~~~~~A~~~~ 64 (268)
.|++++|+.+|
T Consensus 18 ~g~~~~A~~~Y 28 (69)
T PF04212_consen 18 AGNYEEALELY 28 (69)
T ss_dssp TTSHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 44444444443
No 433
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.42 E-value=43 Score=29.69 Aligned_cols=93 Identities=12% Similarity=0.041 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 024419 24 LKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ--WEKGYFRKGCILEAMEQYDDALSAFQTA 101 (268)
Q Consensus 24 ~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~~ 101 (268)
+.+.+.........|.++...+..+..+...|+.+.|+..++.++...-. ..-.++.+|.++..+.+|..|-..+...
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L 329 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLL 329 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 45555666666778999988889999999999988888888888872111 2345678888999999999998888888
Q ss_pred HhhCCCCHHHHHHHH
Q 024419 102 LQYNPQSAEVSRKIK 116 (268)
Q Consensus 102 l~~~p~~~~~~~~l~ 116 (268)
...+.=....|..++
T Consensus 330 ~desdWS~a~Y~Yfa 344 (546)
T KOG3783|consen 330 RDESDWSHAFYTYFA 344 (546)
T ss_pred HhhhhhhHHHHHHHH
Confidence 766554444444444
No 434
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=69.41 E-value=13 Score=23.27 Aligned_cols=16 Identities=38% Similarity=0.646 Sum_probs=7.4
Q ss_pred HccCHHHHHHHHHHHH
Q 024419 87 AMEQYDDALSAFQTAL 102 (268)
Q Consensus 87 ~~~~~~~A~~~~~~~l 102 (268)
..|++++|+..|..++
T Consensus 18 ~~g~y~eA~~~Y~~ai 33 (75)
T cd02678 18 NAGNYEEALRLYQHAL 33 (75)
T ss_pred HcCCHHHHHHHHHHHH
Confidence 3445554444444443
No 435
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=69.33 E-value=17 Score=27.40 Aligned_cols=43 Identities=16% Similarity=0.114 Sum_probs=24.8
Q ss_pred HHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHH
Q 024419 49 AAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYD 92 (268)
Q Consensus 49 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 92 (268)
.++.+.|++++|.+.+++... +|++......|..+-.....+.
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~h 161 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPAH 161 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHcccccc
Confidence 345666666666666666666 6665555555555554444433
No 436
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=69.14 E-value=12 Score=18.39 Aligned_cols=22 Identities=9% Similarity=0.060 Sum_probs=10.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHH
Q 024419 47 RAAAFLHLVKLNKALADAETTI 68 (268)
Q Consensus 47 ~a~~~~~~~~~~~A~~~~~~al 68 (268)
+-.+|.+.|++++|.+.|.+..
T Consensus 6 li~~~~~~~~~~~a~~~~~~M~ 27 (35)
T TIGR00756 6 LIDGLCKAGRVEEALELFKEML 27 (35)
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 3344444555555555544443
No 437
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=68.98 E-value=36 Score=23.85 Aligned_cols=66 Identities=15% Similarity=0.085 Sum_probs=48.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCC---------------CHHHHHHHHHHHHHccCHHHHHHHHHHH----Hhh
Q 024419 44 FSNRAAAFLHLVKLNKALADAETTISLNPQ---------------WEKGYFRKGCILEAMEQYDDALSAFQTA----LQY 104 (268)
Q Consensus 44 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---------------~~~~~~~la~~~~~~~~~~~A~~~~~~~----l~~ 104 (268)
+..+|...++.+++-.++-+|++|+.+..+ .+-...++|..+..+|+.+-.+++++-+ +.+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 466788888999999999999999876321 1234567888888999988888777644 455
Q ss_pred CCCCH
Q 024419 105 NPQSA 109 (268)
Q Consensus 105 ~p~~~ 109 (268)
-|..+
T Consensus 84 iPQCp 88 (140)
T PF10952_consen 84 IPQCP 88 (140)
T ss_pred ccCCC
Confidence 66553
No 438
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=68.79 E-value=74 Score=27.19 Aligned_cols=62 Identities=18% Similarity=0.056 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH--HHHHHH--HHHHHHccCHHHHHHHHHHHHhh
Q 024419 43 LFSNRAAAFLHLVKLNKALADAETTISLNPQWE--KGYFRK--GCILEAMEQYDDALSAFQTALQY 104 (268)
Q Consensus 43 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~l--a~~~~~~~~~~~A~~~~~~~l~~ 104 (268)
.....+.-.+..++|..|...+......-|... ..+..+ |.-++..-++++|.+.+++.+..
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344567778899999999999999998533333 344444 44455677899999999998865
No 439
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=67.18 E-value=1.1e+02 Score=28.34 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=15.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHH
Q 024419 11 KDKGNEFFKAGNYLKAAALYTQ 32 (268)
Q Consensus 11 ~~~g~~~~~~~~~~~A~~~~~~ 32 (268)
..+|..+...|.|.+|...|.+
T Consensus 636 iLlA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 636 LLLADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHHHHhhhhHHHHHHHHHH
Confidence 3456667777777777777754
No 440
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=67.17 E-value=15 Score=23.13 Aligned_cols=31 Identities=19% Similarity=0.230 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 024419 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ 36 (268)
Q Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 36 (268)
.+-.++..|...-..|+|++|..+|..+++.
T Consensus 5 ~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 5 QAAELIRLALEKEEEGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4556667777777778888888888777653
No 441
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.03 E-value=52 Score=24.77 Aligned_cols=108 Identities=12% Similarity=0.036 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--C--hHHHHHHHHHHHHcCChHHHHHHHHHHH-hhCCCCHHHHHHHHH
Q 024419 9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPS--N--PTLFSNRAAAFLHLVKLNKALADAETTI-SLNPQWEKGYFRKGC 83 (268)
Q Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~--~~~~~~~a~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~la~ 83 (268)
+.+..|.+..+.|+...|+..|..+-.-.|- - -.+...-+.+++..|.|++-....+-.- .-+|--..+.--||.
T Consensus 96 A~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALgl 175 (221)
T COG4649 96 ARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGL 175 (221)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhH
Confidence 3445566666677777777777665554321 1 1234444556666666666555443322 224444556666676
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024419 84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKR 117 (268)
Q Consensus 84 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 117 (268)
.-++.|++.+|.+.|..+.. |...|....+.++
T Consensus 176 Aa~kagd~a~A~~~F~qia~-Da~aprnirqRAq 208 (221)
T COG4649 176 AAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQ 208 (221)
T ss_pred HHHhccchHHHHHHHHHHHc-cccCcHHHHHHHH
Confidence 77777777777777766654 3333444333333
No 442
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=66.97 E-value=14 Score=18.25 Aligned_cols=24 Identities=13% Similarity=-0.096 Sum_probs=11.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHH
Q 024419 45 SNRAAAFLHLVKLNKALADAETTI 68 (268)
Q Consensus 45 ~~~a~~~~~~~~~~~A~~~~~~al 68 (268)
..+-.++.+.|+++.|...++...
T Consensus 5 ~~ll~a~~~~g~~~~a~~~~~~M~ 28 (34)
T PF13812_consen 5 NALLRACAKAGDPDAALQLFDEMK 28 (34)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334444444555555544444433
No 443
>PRK11619 lytic murein transglycosylase; Provisional
Probab=66.87 E-value=1e+02 Score=28.49 Aligned_cols=53 Identities=6% Similarity=-0.123 Sum_probs=30.0
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 024419 50 AFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTAL 102 (268)
Q Consensus 50 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l 102 (268)
.....++++.+...+...-..........+.+|.++...|+.++|...|+++.
T Consensus 321 ~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 321 MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 33455566555555544322222344566667777666777777777777653
No 444
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=65.99 E-value=43 Score=27.16 Aligned_cols=116 Identities=10% Similarity=0.072 Sum_probs=79.7
Q ss_pred hHhHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH------HHcCChHHHHHHHHHHHhhCCCCH
Q 024419 4 EAEEMSLKDKGNEFFK--AGNYLKAAALYTQAIKQDPSNPTLFSNRAAAF------LHLVKLNKALADAETTISLNPQWE 75 (268)
Q Consensus 4 ~~~~~~~~~~g~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~------~~~~~~~~A~~~~~~al~~~p~~~ 75 (268)
|..-..+.-+-.++-. ..++..-...-++.+..||.|-.+|..+-.|. .....+.+-.++-..+|..|+.|.
T Consensus 105 PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~ 184 (328)
T COG5536 105 PKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNN 184 (328)
T ss_pred CchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCCh
Confidence 4444444444444433 36688888888999999999988887776665 334445555666677888899999
Q ss_pred HHHHHHH---HHHHHccC------HHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024419 76 KGYFRKG---CILEAMEQ------YDDALSAFQTALQYNPQSAEVSRKIKRVS 119 (268)
Q Consensus 76 ~~~~~la---~~~~~~~~------~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 119 (268)
.+|...- ...+..|+ +++-++..-..+-.+|++..+|..+..+.
T Consensus 185 SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r~~~ 237 (328)
T COG5536 185 SAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLRGVS 237 (328)
T ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHHHHHh
Confidence 9987773 22333443 56667777788888999998887665543
No 445
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=65.48 E-value=22 Score=31.13 Aligned_cols=46 Identities=33% Similarity=0.369 Sum_probs=23.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcC
Q 024419 10 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLV 55 (268)
Q Consensus 10 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~ 55 (268)
...+|...+..|+|.-+.+..++++-.+|++..+....+.|+.++|
T Consensus 455 Vl~la~ea~~kGdyrW~a~lln~~VfAdp~n~~Ar~L~Ad~lEQLg 500 (655)
T COG2015 455 VLELAREAFDKGDYRWAAELLNQAVFADPGNKAARELQADALEQLG 500 (655)
T ss_pred HHHHHHHHHhcccchHHHHHHhhHHhcCCccHHHHHHHHhHHHHhh
Confidence 3444455555555555555555555555555555555555554444
No 446
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.31 E-value=1.1e+02 Score=27.91 Aligned_cols=51 Identities=20% Similarity=0.072 Sum_probs=37.6
Q ss_pred HHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 024419 49 AAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQY 104 (268)
Q Consensus 49 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 104 (268)
.+..+.|+++.|.+...++ ++..=|..||.+....+++..|.++|.++-..
T Consensus 645 elal~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 645 ELALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred hhhhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 3446777777776654333 55667888999999999999999999887543
No 447
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=64.98 E-value=13 Score=31.44 Aligned_cols=31 Identities=23% Similarity=0.294 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCC
Q 024419 24 LKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVK 56 (268)
Q Consensus 24 ~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~ 56 (268)
..|++++++|.. ..++..|..+|.++..+|+
T Consensus 335 ~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGN 365 (404)
T PF12753_consen 335 KKALEYLKKAQD--EDDPETWVDVAEAMIDLGN 365 (404)
T ss_dssp HHHHHHHHHHHH--S--TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc--cCChhHHHHHHHHHhhhhc
Confidence 345555555544 3345556666655555554
No 448
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=62.41 E-value=53 Score=28.46 Aligned_cols=105 Identities=15% Similarity=0.190 Sum_probs=56.3
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--------hHH--HHHHHHHH-------HHcCC-----hHHHHHH
Q 024419 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN--------PTL--FSNRAAAF-------LHLVK-----LNKALAD 63 (268)
Q Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--------~~~--~~~~a~~~-------~~~~~-----~~~A~~~ 63 (268)
........|..++..|++.+|+..|+.+|..-|-. ..+ +..++.-| ....+ .+...+.
T Consensus 203 ~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~kR~ 282 (422)
T PF06957_consen 203 SLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQKRN 282 (422)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHH
Confidence 34455678999999999999999999998753211 011 12221111 11111 1222222
Q ss_pred HHHHH-----hhCCCCHHHHHHHHH-HHHHccCHHHHHHHHHHHHhhCCCCHH
Q 024419 64 AETTI-----SLNPQWEKGYFRKGC-ILEAMEQYDDALSAFQTALQYNPQSAE 110 (268)
Q Consensus 64 ~~~al-----~~~p~~~~~~~~la~-~~~~~~~~~~A~~~~~~~l~~~p~~~~ 110 (268)
++-+. ++.|.+...-++.|+ ..++.++|..|...-++.|++.|....
T Consensus 283 lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~ 335 (422)
T PF06957_consen 283 LELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEV 335 (422)
T ss_dssp HHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHH
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHH
Confidence 22221 223333333333333 345679999999999999999997543
No 449
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=61.80 E-value=25 Score=29.68 Aligned_cols=42 Identities=19% Similarity=0.182 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419 91 YDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE 132 (268)
Q Consensus 91 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 132 (268)
.-+|+..++.++..+|.|......+..+|..+|-...|....
T Consensus 199 l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~ 240 (365)
T PF09797_consen 199 LLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHY 240 (365)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 456888999999999999999999999999999999887664
No 450
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=61.16 E-value=20 Score=18.00 Aligned_cols=11 Identities=36% Similarity=0.347 Sum_probs=4.2
Q ss_pred hHHHHHHHHHH
Q 024419 57 LNKALADAETT 67 (268)
Q Consensus 57 ~~~A~~~~~~a 67 (268)
..+|+..|+++
T Consensus 21 ~~~A~~~~~~A 31 (36)
T smart00671 21 LEKALEYYKKA 31 (36)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 451
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=60.99 E-value=1.1e+02 Score=26.26 Aligned_cols=64 Identities=14% Similarity=0.040 Sum_probs=46.4
Q ss_pred chHhHHHHHH--HHHHHHHcCCHHHHHHHHHHHHhcCCCC-----hHHHHHHHHHH--HHcCChHHHHHHHHH
Q 024419 3 AEAEEMSLKD--KGNEFFKAGNYLKAAALYTQAIKQDPSN-----PTLFSNRAAAF--LHLVKLNKALADAET 66 (268)
Q Consensus 3 ~~~~~~~~~~--~g~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~a~~~--~~~~~~~~A~~~~~~ 66 (268)
+|-....... .+..++..++|..|...|..++...+.. ...+..++.+| ...-++++|.+.+++
T Consensus 124 nP~~v~~~~e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 124 DPYNVEGNTEQGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred CHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 4555555444 5558999999999999999999886422 33445555554 557889999999985
No 452
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=60.85 E-value=1.1e+02 Score=26.46 Aligned_cols=96 Identities=14% Similarity=-0.001 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------hHHHHHHHHHHHHcCCh--------------HHHHHHHHHHH
Q 024419 9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN------PTLFSNRAAAFLHLVKL--------------NKALADAETTI 68 (268)
Q Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~--------------~~A~~~~~~al 68 (268)
....+|+..+..++|+-|...|+.+.+-.-++ +.+.-..|.|.+..+.. +.|...|.++-
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~ 289 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSA 289 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhh
Confidence 45678999999999999999999988744322 22333445555555532 23333343321
Q ss_pred ----hhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 024419 69 ----SLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQY 104 (268)
Q Consensus 69 ----~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 104 (268)
...+.-..+.+..+.++...+.+.+|...+-+....
T Consensus 290 ~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 290 LPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred ccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 111122345556667777777777766655555433
No 453
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=60.02 E-value=1.1e+02 Score=26.30 Aligned_cols=101 Identities=15% Similarity=0.117 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHHHHHHHhHHHHh-hhhhHHHhhhHHHHHHHh
Q 024419 76 KGYFRKGCILEAMEQYDDALSAFQTALQYNPQS---AEVSRKIKRVSQLAKDKKRAQEVEN-IRSNVDMVQHLDEFKSEM 151 (268)
Q Consensus 76 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~ 151 (268)
.++..+|.-|..-|+++.|+..|.++-....+. ...+.++-.+....++|......-. ..+.... .....
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~------~~~~~ 224 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDA------NENLA 224 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchh------hhhHH
Confidence 567888999999999999999999966554433 4567777777777888877654421 1111100 11111
Q ss_pred hhhcCchhhhHHHHHHHHHHHHHHHHhhhhh
Q 024419 152 SEKYGAEECWKHVFSFVVETMETAVKSWHET 182 (268)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 182 (268)
..-.....+..|...+.++.|..|.++|-.+
T Consensus 225 q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 225 QEVPAKLKCAAGLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred HhcCcchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 2224456788888899999999999888754
No 454
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.20 E-value=25 Score=24.96 Aligned_cols=30 Identities=23% Similarity=0.221 Sum_probs=17.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 024419 12 DKGNEFFKAGNYLKAAALYTQAIKQDPSNP 41 (268)
Q Consensus 12 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~ 41 (268)
.+|..++.+|+++++..++-.|+.+.|...
T Consensus 86 ~lGE~L~~qg~~e~ga~h~~nAi~vcgqpa 115 (143)
T KOG4056|consen 86 QLGEELLAQGNEEEGAEHLANAIVVCGQPA 115 (143)
T ss_pred HhHHHHHHccCHHHHHHHHHHHHhhcCCHH
Confidence 455666666666666666666665555443
No 455
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=58.38 E-value=1.7e+02 Score=27.76 Aligned_cols=98 Identities=10% Similarity=0.003 Sum_probs=70.0
Q ss_pred CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH---ccCHHHHHHH
Q 024419 21 GNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEA---MEQYDDALSA 97 (268)
Q Consensus 21 ~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---~~~~~~A~~~ 97 (268)
+.-++-+.-++.-+.+++.+...+..+-.++...|++++-...-.++..+.|-.+..|..+..-... .+...++...
T Consensus 93 ~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~ 172 (881)
T KOG0128|consen 93 GGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEEL 172 (881)
T ss_pred ccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHH
Confidence 3445567777777788888888888888888888888887777777788888888887776654433 3566777788
Q ss_pred HHHHHhhCCCCHHHHHHHHHHH
Q 024419 98 FQTALQYNPQSAEVSRKIKRVS 119 (268)
Q Consensus 98 ~~~~l~~~p~~~~~~~~l~~~~ 119 (268)
|++++. +-.++.+|...+...
T Consensus 173 ~ekal~-dy~~v~iw~e~~~y~ 193 (881)
T KOG0128|consen 173 FEKALG-DYNSVPIWEEVVNYL 193 (881)
T ss_pred HHHHhc-ccccchHHHHHHHHH
Confidence 888874 344555555555443
No 456
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=58.33 E-value=84 Score=28.51 Aligned_cols=59 Identities=15% Similarity=0.081 Sum_probs=50.7
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHH
Q 024419 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAE 65 (268)
Q Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~ 65 (268)
..+...+..+..+..-+..++|-.+|++.+..+|+ ..++..+.-+.+.|-...|...+.
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 40 LTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred hhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence 45677888999999999999999999999999998 667777888888888888877776
No 457
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=57.70 E-value=93 Score=24.55 Aligned_cols=60 Identities=10% Similarity=0.056 Sum_probs=31.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHH-ccCHHHHHHHHHHHHh
Q 024419 44 FSNRAAAFLHLVKLNKALADAETTISLNPQW-EKGYFRKGCILEA-MEQYDDALSAFQTALQ 103 (268)
Q Consensus 44 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~-~~~~~~A~~~~~~~l~ 103 (268)
+..+|.+..+.|+|++++.+.++++..+|+. .+=...++.+|.. .|....+...+.....
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 3456666666677777777777777666653 3334444444433 2344444444444333
No 458
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=57.51 E-value=41 Score=23.46 Aligned_cols=33 Identities=36% Similarity=0.440 Sum_probs=24.9
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH
Q 024419 78 YFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110 (268)
Q Consensus 78 ~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 110 (268)
...+|..+...|++++|..+|-+|+...|.-..
T Consensus 66 qV~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~ 98 (121)
T PF02064_consen 66 QVQLGEQLLAQGDYEEAAEHFYNALKVCPQPAE 98 (121)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHH
Confidence 356788888888888888888888888876443
No 459
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=56.35 E-value=20 Score=28.68 Aligned_cols=93 Identities=20% Similarity=0.195 Sum_probs=67.3
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH----------HcCChHHHHHHHHHHHhhCCC------CHHHHH
Q 024419 16 EFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFL----------HLVKLNKALADAETTISLNPQ------WEKGYF 79 (268)
Q Consensus 16 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~----------~~~~~~~A~~~~~~al~~~p~------~~~~~~ 79 (268)
.++..++.-.|+..|...+.-.|.+..+...-+.|.. ..-....|.++..+||..... -..+-+
T Consensus 4 ~L~D~~e~L~~L~~~~~~~~~~~~NL~~l~~~a~~lEk~~~~Fs~~~s~~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~ 83 (368)
T COG5091 4 ALYDEKEPLKALHLYDEILKGSPTNLTALIFKAACLEKLYFGFSDWHSDATMENAKELLDKALMTAEGRGDRSKIGLVNF 83 (368)
T ss_pred chhcccchHHHhhhhhhhhccCCcceeEEeehhhhHHHHHhhhhhhhcccChhhHHHHHHHHHHhhhccCCcceeeeehh
Confidence 4556677778889999988888888544443333332 223567888999999876432 134567
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 024419 80 RKGCILEAMEQYDDALSAFQTALQYNPQS 108 (268)
Q Consensus 80 ~la~~~~~~~~~~~A~~~~~~~l~~~p~~ 108 (268)
..+..|+...+|+.|-.+|.+++.+.-++
T Consensus 84 ~~~v~~~~ik~Ye~a~~~F~~A~~~~~~d 112 (368)
T COG5091 84 RYFVHFFNIKDYELAQSYFKKAKNLYVDD 112 (368)
T ss_pred hhHHHhhhHHHHHHHHHHHHHHHHHhhcc
Confidence 78899999999999999999999875443
No 460
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=56.19 E-value=1.2e+02 Score=25.43 Aligned_cols=89 Identities=11% Similarity=0.054 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC--------------
Q 024419 42 TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQ-------------- 107 (268)
Q Consensus 42 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-------------- 107 (268)
..-..+-..-.+..+..+-|+....++++||..+.+|..++.--. --..+|...++++++.-..
T Consensus 185 r~e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEEa--~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~ 262 (556)
T KOG3807|consen 185 RPEDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEEA--TTIVDAERLFKQALKAGETIYRQSQQCQHQSPQ 262 (556)
T ss_pred ChHHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhhh--hhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccc
Confidence 444455556667788888899999999999999999988874322 2345566666666654211
Q ss_pred ---------C--HHHHHHHHHHHHHHHHHHHhHHHH
Q 024419 108 ---------S--AEVSRKIKRVSQLAKDKKRAQEVE 132 (268)
Q Consensus 108 ---------~--~~~~~~l~~~~~~~~~~~~a~~~~ 132 (268)
+ ..+-..++.+..++|...+|.+..
T Consensus 263 ~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~ 298 (556)
T KOG3807|consen 263 HEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIM 298 (556)
T ss_pred hhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHH
Confidence 1 234567888888899998887653
No 461
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=55.21 E-value=36 Score=21.21 Aligned_cols=15 Identities=20% Similarity=0.189 Sum_probs=7.7
Q ss_pred hHHHHHHHHHHHhhC
Q 024419 57 LNKALADAETTISLN 71 (268)
Q Consensus 57 ~~~A~~~~~~al~~~ 71 (268)
+++|+....+|++.+
T Consensus 5 ~~~A~~li~~Av~~d 19 (77)
T smart00745 5 LSKAKELISKALKAD 19 (77)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555554443
No 462
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.70 E-value=2.1e+02 Score=27.63 Aligned_cols=107 Identities=14% Similarity=0.134 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----------ChHHHHHHHHHHHH------------cCChHHH--HH
Q 024419 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPS----------NPTLFSNRAAAFLH------------LVKLNKA--LA 62 (268)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----------~~~~~~~~a~~~~~------------~~~~~~A--~~ 62 (268)
...-.+.|..+...|.+.+|++.|+.++-.-|- .+.-+..++.-|.. .+...++ +.
T Consensus 991 l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElA 1070 (1202)
T KOG0292|consen 991 LNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELA 1070 (1202)
T ss_pred HHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHH
Confidence 344567888999999999999999998865331 12233333433321 1233444 23
Q ss_pred HHHHHHhhCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHH
Q 024419 63 DAETTISLNPQWE-KGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSR 113 (268)
Q Consensus 63 ~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 113 (268)
.|-.-..+.|-+. .++..--.++++++++..|-..-.+.+++.|..+.+-.
T Consensus 1071 aYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q 1122 (1202)
T KOG0292|consen 1071 AYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQ 1122 (1202)
T ss_pred HHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHH
Confidence 3333344556543 33333446788999999999999999999998776643
No 463
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=54.42 E-value=29 Score=17.79 Aligned_cols=10 Identities=30% Similarity=0.169 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 024419 58 NKALADAETT 67 (268)
Q Consensus 58 ~~A~~~~~~a 67 (268)
++|+.+|+++
T Consensus 25 ~~A~~~~~~A 34 (39)
T PF08238_consen 25 EKAFKWYEKA 34 (39)
T ss_dssp HHHHHHHHHH
T ss_pred cchHHHHHHH
Confidence 3344444333
No 464
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=54.41 E-value=36 Score=24.65 Aligned_cols=28 Identities=7% Similarity=0.164 Sum_probs=18.3
Q ss_pred HHHHHHHHcC-ChHHHHHHHHHHHhhCCC
Q 024419 46 NRAAAFLHLV-KLNKALADAETTISLNPQ 73 (268)
Q Consensus 46 ~~a~~~~~~~-~~~~A~~~~~~al~~~p~ 73 (268)
.+|..+...| +..+|..+|-+||...|.
T Consensus 95 ~~GE~L~~~g~~~~ega~hf~nAl~Vc~q 123 (148)
T TIGR00985 95 QLGEELMAQGTNVDEGAVHFYNALKVYPQ 123 (148)
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHHhCCC
Confidence 3566666666 666677777777766654
No 465
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=53.94 E-value=97 Score=23.61 Aligned_cols=110 Identities=14% Similarity=0.087 Sum_probs=74.3
Q ss_pred HhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH-----HcCChHHHHHHHHHHHhhCCCCHHHH
Q 024419 5 AEEMSLKDKGNEFF-KAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFL-----HLVKLNKALADAETTISLNPQWEKGY 78 (268)
Q Consensus 5 ~~~~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~-----~~~~~~~A~~~~~~al~~~p~~~~~~ 78 (268)
..+++...+|..+. .+++|+.|...|..-...+ ..+..-+.+|.-++ ..++...|++.+..+-.. +.+.+.
T Consensus 32 K~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden-~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~--n~~~aC 108 (248)
T KOG4014|consen 32 KRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDEN-SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA--NIPQAC 108 (248)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc-CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc--CCHHHH
Confidence 34566677777664 4568888888887755533 23445555555443 235789999999998874 467788
Q ss_pred HHHHHHHHHcc-------CHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024419 79 FRKGCILEAME-------QYDDALSAFQTALQYNPQSAEVSRKIKRVS 119 (268)
Q Consensus 79 ~~la~~~~~~~-------~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 119 (268)
..+|.+++.-. +.++|..++.++-.++ +..+-..|+..+
T Consensus 109 ~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~ 154 (248)
T KOG4014|consen 109 RYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMY 154 (248)
T ss_pred hhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHH
Confidence 88888887642 3778999999987664 445555555544
No 466
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=53.73 E-value=42 Score=28.26 Aligned_cols=60 Identities=13% Similarity=0.066 Sum_probs=45.9
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--------CChHHHHHHHHHHHHcCChHHHHHHH
Q 024419 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDP--------SNPTLFSNRAAAFLHLVKLNKALADA 64 (268)
Q Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~~a~~~~~~~~~~~A~~~~ 64 (268)
.....+...|+-.+.+++++.|...|..|..+.. .+..+++..|..++..++....+-..
T Consensus 39 ~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~n 106 (400)
T KOG4563|consen 39 KTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLGN 106 (400)
T ss_pred HHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3456788899999999999999999999987632 34577788888888887776655443
No 467
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=53.13 E-value=62 Score=30.26 Aligned_cols=76 Identities=14% Similarity=0.244 Sum_probs=55.2
Q ss_pred cCCHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHc---------CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Q 024419 20 AGNYLKAAALYTQAIKQDP-SNPTLFSNRAAAFLHL---------VKLNKALADAETTISLNPQWEKGYFRKGCILEAME 89 (268)
Q Consensus 20 ~~~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 89 (268)
-|+-++|+...-.+++... -.++.++..|.+|-.+ +..+.|+++|+++.+..|.... =++++.++...|
T Consensus 256 ~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~s-GIN~atLL~aaG 334 (1226)
T KOG4279|consen 256 PGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYS-GINLATLLRAAG 334 (1226)
T ss_pred CccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhc-cccHHHHHHHhh
Confidence 4788899999888888754 4567888888888654 4567899999999999997543 346666666665
Q ss_pred C-HHHHHH
Q 024419 90 Q-YDDALS 96 (268)
Q Consensus 90 ~-~~~A~~ 96 (268)
+ |+...+
T Consensus 335 ~~Fens~E 342 (1226)
T KOG4279|consen 335 EHFENSLE 342 (1226)
T ss_pred hhccchHH
Confidence 4 444433
No 468
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=53.05 E-value=69 Score=21.63 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=15.8
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhh
Q 024419 79 FRKGCILEAMEQYDDALSAFQTALQY 104 (268)
Q Consensus 79 ~~la~~~~~~~~~~~A~~~~~~~l~~ 104 (268)
...|.+-...|+++.|.+...++-+.
T Consensus 63 l~~Gl~al~~G~~~~A~k~~~~a~~~ 88 (108)
T PF07219_consen 63 LSRGLIALAEGDWQRAEKLLAKAAKL 88 (108)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 34455555666666666666666544
No 469
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=52.36 E-value=79 Score=22.11 Aligned_cols=44 Identities=9% Similarity=0.041 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhc--CCCChHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 024419 25 KAAALYTQAIKQ--DPSNPTLFSNRAAAFLHLVKLNKALADAETTI 68 (268)
Q Consensus 25 ~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 68 (268)
++.+.|..+... .-+.+..|..-|..+...|++++|.+.|+.+|
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
No 470
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=52.30 E-value=69 Score=22.47 Aligned_cols=23 Identities=26% Similarity=0.205 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHH
Q 024419 109 AEVSRKIKRVSQLAKDKKRAQEV 131 (268)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~~a~~~ 131 (268)
+..|...+..+...|.+.+|.++
T Consensus 99 AlfYe~~A~~lE~~g~~~~A~~i 121 (125)
T smart00777 99 ALFYEEWAQLLEAAGRYKKADEV 121 (125)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHH
Confidence 34444445555555555555444
No 471
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=51.64 E-value=74 Score=22.52 Aligned_cols=37 Identities=11% Similarity=0.057 Sum_probs=23.1
Q ss_pred HHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 024419 51 FLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEA 87 (268)
Q Consensus 51 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 87 (268)
++..-+.+.|...|...++.+|++..+|..+-...-.
T Consensus 86 ~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~lDS 122 (139)
T PF12583_consen 86 WIAKLEPENAEQVYEELLEAHPDHLPAHLAMIQNLDS 122 (139)
T ss_dssp HHTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHHHH
T ss_pred HHHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHccCc
Confidence 3444556777788888888888887777766655543
No 472
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=51.32 E-value=1.2e+02 Score=24.57 Aligned_cols=67 Identities=15% Similarity=0.076 Sum_probs=51.4
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHcC----------------------ChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024419 26 AAALYTQAIKQDPSNPTLFSNRAAAFLHLV----------------------KLNKALADAETTISLNPQWEKGYFRKGC 83 (268)
Q Consensus 26 A~~~~~~al~~~p~~~~~~~~~a~~~~~~~----------------------~~~~A~~~~~~al~~~p~~~~~~~~la~ 83 (268)
-.+.++.=++..|++..++..+|.++.... -.+.|...+.+|+.++|+.+.++..+-.
T Consensus 62 ~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~ 141 (277)
T PF13226_consen 62 RLAVLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMIN 141 (277)
T ss_pred HHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 445555556779999999998888876542 1468899999999999999988888777
Q ss_pred HHHHccCHH
Q 024419 84 ILEAMEQYD 92 (268)
Q Consensus 84 ~~~~~~~~~ 92 (268)
+-...|+.+
T Consensus 142 ~s~~fgeP~ 150 (277)
T PF13226_consen 142 ISAYFGEPD 150 (277)
T ss_pred HHhhcCCch
Confidence 766666653
No 473
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=50.81 E-value=41 Score=28.28 Aligned_cols=57 Identities=12% Similarity=0.072 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCC--------CCHHHHHHHHHHHHHccCHHHHHHHH
Q 024419 42 TLFSNRAAAFLHLVKLNKALADAETTISLNP--------QWEKGYFRKGCILEAMEQYDDALSAF 98 (268)
Q Consensus 42 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~~~~~~A~~~~ 98 (268)
.-+...|+-.+.++++++|...|..|..+.. ++..+++..|.++...++++..+-.+
T Consensus 42 e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~n 106 (400)
T KOG4563|consen 42 EELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLGN 106 (400)
T ss_pred HHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3467789999999999999999999987632 35788999999999998888776443
No 474
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=49.86 E-value=64 Score=20.35 Aligned_cols=15 Identities=7% Similarity=0.140 Sum_probs=7.4
Q ss_pred HHHHHHHHHhhCCCC
Q 024419 94 ALSAFQTALQYNPQS 108 (268)
Q Consensus 94 A~~~~~~~l~~~p~~ 108 (268)
|++.|..+++..|+.
T Consensus 32 aie~l~~~lk~e~d~ 46 (77)
T cd02683 32 GIDLLMQVLKGTKDE 46 (77)
T ss_pred HHHHHHHHHhhCCCH
Confidence 344445555555543
No 475
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=49.75 E-value=1.1e+02 Score=23.17 Aligned_cols=42 Identities=10% Similarity=0.187 Sum_probs=32.7
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 024419 80 RKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA 122 (268)
Q Consensus 80 ~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 122 (268)
..-.++...|.|++|.+.+++..+ +|++......|..+-...
T Consensus 116 ~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~K 157 (200)
T cd00280 116 QAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREK 157 (200)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHcc
Confidence 344678899999999999999999 898877766666554433
No 476
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.50 E-value=1.1e+02 Score=28.91 Aligned_cols=32 Identities=16% Similarity=0.282 Sum_probs=27.8
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 024419 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ 36 (268)
Q Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 36 (268)
.-++.....|..++..|++++|...|.+.+..
T Consensus 366 ~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 366 TLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 34567788999999999999999999999875
No 477
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=48.78 E-value=95 Score=22.01 Aligned_cols=38 Identities=13% Similarity=0.165 Sum_probs=26.7
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024419 82 GCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVS 119 (268)
Q Consensus 82 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 119 (268)
=..++..-+.+.|...|+.+++.+|++..++..+-+..
T Consensus 83 q~~~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~l 120 (139)
T PF12583_consen 83 QCSWIAKLEPENAEQVYEELLEAHPDHLPAHLAMIQNL 120 (139)
T ss_dssp HHHHHTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHH
T ss_pred HHHHHHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHcc
Confidence 33445556778899999999999999999887665543
No 478
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=48.34 E-value=1.4e+02 Score=23.91 Aligned_cols=94 Identities=15% Similarity=-0.002 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCChHHHHHHHHHHHHcCChH-HHHHHHHHHHhhC------CCCH
Q 024419 8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQ-----DPSNPTLFSNRAAAFLHLVKLN-KALADAETTISLN------PQWE 75 (268)
Q Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~a~~~~~~~~~~-~A~~~~~~al~~~------p~~~ 75 (268)
+.++.=+..+.+.|++..|.+...-.++. .|.+....-+++.+......-+ .-.+..+++++-. -.++
T Consensus 11 dLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp 90 (260)
T PF04190_consen 11 DLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDP 90 (260)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--H
T ss_pred HHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCH
Confidence 34556666777777777776666555543 3344455566676666665332 2222333333321 1367
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHH
Q 024419 76 KGYFRKGCILEAMEQYDDALSAFQTA 101 (268)
Q Consensus 76 ~~~~~la~~~~~~~~~~~A~~~~~~~ 101 (268)
..|..+|..+++.|++.+|..+|-.+
T Consensus 91 ~LH~~~a~~~~~e~~~~~A~~Hfl~~ 116 (260)
T PF04190_consen 91 ELHHLLAEKLWKEGNYYEAERHFLLG 116 (260)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHTS
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHhc
Confidence 88888888888888888888776543
No 479
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=48.11 E-value=1.6e+02 Score=24.54 Aligned_cols=94 Identities=16% Similarity=0.053 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--------ChHHHHHHHHHHHHcCChHHHHHHHHHHH--hhCCCCHHHH
Q 024419 9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPS--------NPTLFSNRAAAFLHLVKLNKALADAETTI--SLNPQWEKGY 78 (268)
Q Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~al--~~~p~~~~~~ 78 (268)
.-..+|.+|...++|..|...+.- +..+.. -...+..+|..|...++..+|.....++- ..+..|....
T Consensus 105 irl~LAsiYE~Eq~~~~aaq~L~~-I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~Lq 183 (399)
T KOG1497|consen 105 IRLHLASIYEKEQNWRDAAQVLVG-IPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQLQ 183 (399)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhc-cCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHHH
Confidence 346789999999999999887643 333321 13567788999999999999988887763 3344554443
Q ss_pred H----HHHHHHHHccCHHHHHHHHHHHHh
Q 024419 79 F----RKGCILEAMEQYDDALSAFQTALQ 103 (268)
Q Consensus 79 ~----~la~~~~~~~~~~~A~~~~~~~l~ 103 (268)
. ..|.++-..++|-+|...|-+...
T Consensus 184 ie~kvc~ARvlD~krkFlEAAqrYyels~ 212 (399)
T KOG1497|consen 184 IEYKVCYARVLDYKRKFLEAAQRYYELSQ 212 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 345555666777777766665543
No 480
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=46.76 E-value=1.2e+02 Score=27.36 Aligned_cols=63 Identities=11% Similarity=0.091 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHHhc-----CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 024419 7 EMSLKDKGNEFFKA--GNYLKAAALYTQAIKQ-----DPSNPTLFSNRAAAFLHLVKLNKALADAETTIS 69 (268)
Q Consensus 7 ~~~~~~~g~~~~~~--~~~~~A~~~~~~al~~-----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 69 (268)
+.++-.+|.+-... ..-..+++.|.+|+.. +..+...|..+|-++++.+++.+|+..+..+-.
T Consensus 277 PmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~ 346 (618)
T PF05053_consen 277 PMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEAAD 346 (618)
T ss_dssp HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred chhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHHHH
Confidence 34555566554432 3345678899998875 445678889999999999999999999877754
No 481
>cd00215 PTS_IIA_lac PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.
Probab=46.53 E-value=38 Score=22.51 Aligned_cols=30 Identities=20% Similarity=0.173 Sum_probs=17.1
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024419 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAI 34 (268)
Q Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 34 (268)
.+++.....|....+.|+|++|.+.++++-
T Consensus 13 G~Ars~~~eAl~~a~~g~fe~A~~~l~ea~ 42 (97)
T cd00215 13 GNARSKALEALKAAKEGDFAEAEELLEEAN 42 (97)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445555555555666666666665555543
No 482
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=45.71 E-value=52 Score=27.21 Aligned_cols=41 Identities=17% Similarity=0.266 Sum_probs=26.4
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHH
Q 024419 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFS 45 (268)
Q Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 45 (268)
..+.+++..|-...+.|..-+|+..|+.|+++.|+-...+.
T Consensus 17 kkA~~l~~~av~~Eq~G~l~dai~fYR~AlqI~~diEs~~r 57 (366)
T KOG2997|consen 17 KKAIALYEKAVLKEQDGSLYDAINFYRDALQIVPDIESKYR 57 (366)
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHhhhcCCchHHHHHH
Confidence 34556666666666777777777777777777665444433
No 483
>TIGR00823 EIIA-LAC phosphotransferase system enzyme II, lactose-specific, factor III. operon. While the Lac permeases consist of two polypeptide chains (IIA and IICB), the Chb permease of E. coli consists of three (IIA, IIB and IIC). In B. subtilis, a PTS permease similar to the Chb permease of E. coli is believed to transport lichenan (a b-1,3;1,4 glucan) degradation products, oligosaccharides of 2-4 glucose units. This model is specific for the IIA subunit of the Lac PTS family.
Probab=45.47 E-value=40 Score=22.51 Aligned_cols=29 Identities=34% Similarity=0.302 Sum_probs=14.8
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 024419 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQA 33 (268)
Q Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a 33 (268)
.+++.....|....+.|+|++|.+.+.++
T Consensus 15 G~Ars~~~eAl~~a~~gdfe~A~~~l~eA 43 (99)
T TIGR00823 15 GDARSKALEALKAAKAGDFAKARALVEQA 43 (99)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34445555555555555555555554444
No 484
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.38 E-value=1.9e+02 Score=26.50 Aligned_cols=34 Identities=15% Similarity=0.006 Sum_probs=28.8
Q ss_pred CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 024419 37 DPSNPTLFSNRAAAFLHLVKLNKALADAETTISL 70 (268)
Q Consensus 37 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 70 (268)
+.++..-|-.+|.+....+++..|.+++.++-..
T Consensus 662 e~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 662 EANSEVKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred hhcchHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 3456678999999999999999999999988543
No 485
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=44.99 E-value=85 Score=29.28 Aligned_cols=70 Identities=20% Similarity=0.253 Sum_probs=58.7
Q ss_pred HHHHHHHHH--HcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH
Q 024419 10 LKDKGNEFF--KAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYF 79 (268)
Q Consensus 10 ~~~~g~~~~--~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 79 (268)
....+-+++ ..++|..++..-.-++...|....+++.++.||...+..+-|++...-....+|.+..+-.
T Consensus 94 ~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~e 165 (748)
T KOG4151|consen 94 RSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASE 165 (748)
T ss_pred HHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHH
Confidence 344444444 4579999999999999999999999999999999999999999998888889999855444
No 486
>PRK11619 lytic murein transglycosylase; Provisional
Probab=44.35 E-value=2.7e+02 Score=25.92 Aligned_cols=115 Identities=8% Similarity=-0.055 Sum_probs=76.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------------------
Q 024419 13 KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW------------------ 74 (268)
Q Consensus 13 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------------------ 74 (268)
+.......++++.+...+...-....+.....+.+|.++..+|+.++|...|+++... .++
T Consensus 318 r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~-~~fYG~LAa~~Lg~~~~~~~~ 396 (644)
T PRK11619 318 RVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ-RGFYPMVAAQRLGEEYPLKID 396 (644)
T ss_pred HHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC-CCcHHHHHHHHcCCCCCCCCC
Confidence 3445567788887777776654433456778888888888899999999888887432 110
Q ss_pred ----------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHH
Q 024419 75 ----------EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQE 130 (268)
Q Consensus 75 ----------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~ 130 (268)
...-+..+..+...|+...|...+..++.. .++.-...++.+....|.++.+..
T Consensus 397 ~~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~--~~~~~~~~la~~A~~~g~~~~ai~ 460 (644)
T PRK11619 397 KAPKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVAS--RSKTEQAQLARYAFNQQWWDLSVQ 460 (644)
T ss_pred CCCchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCHHHHHH
Confidence 013345667777888888888888777764 234555666666666666665543
No 487
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=43.61 E-value=1.1e+02 Score=26.51 Aligned_cols=107 Identities=12% Similarity=0.090 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh-------HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 024419 9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP-------TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK 81 (268)
Q Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 81 (268)
++..+-..+.-.|+ -+| -.+.++++|... .+=+..|-+|+.+++|.+|+..|-++|-.=..--..+-..
T Consensus 237 sL~GLlR~H~lLgD-hQa---t~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niLlyIqrtks~~~~~ 312 (525)
T KOG3677|consen 237 SLLGLLRMHILLGD-HQA---TSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNILLYIQRTKSMFSRT 312 (525)
T ss_pred HHHHHHHHHHHhhh-hHh---hhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcch
Q ss_pred HHHHHH-ccCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHH
Q 024419 82 GCILEA-MEQYDDALSAFQTALQYNP--QSAEVSRKIKRVS 119 (268)
Q Consensus 82 a~~~~~-~~~~~~A~~~~~~~l~~~p--~~~~~~~~l~~~~ 119 (268)
+.++.. .++.+.--..+.-++.+.| -+...+..++..+
T Consensus 313 ~y~~d~inKq~eqm~~llai~l~~yPq~iDESi~s~l~Ek~ 353 (525)
T KOG3677|consen 313 TYQYDMINKQNEQMHHLLAICLSMYPQMIDESIHSQLAEKY 353 (525)
T ss_pred hhhHhhhhhhHHHHHHHHHHHHHhCchhhhHHHHHHHHHHh
No 488
>PRK09591 celC cellobiose phosphotransferase system IIA component; Reviewed
Probab=42.44 E-value=48 Score=22.40 Aligned_cols=28 Identities=14% Similarity=0.133 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 024419 6 EEMSLKDKGNEFFKAGNYLKAAALYTQA 33 (268)
Q Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a 33 (268)
+++.....|....+.|+|++|.+.+.++
T Consensus 19 ~Ars~~~eAl~~ak~gdf~~A~~~l~eA 46 (104)
T PRK09591 19 NARTEVHEAFAAMREGNFDLAEQKLNQS 46 (104)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444444444445554444444443
No 489
>PF02255 PTS_IIA: PTS system, Lactose/Cellobiose specific IIA subunit; InterPro: IPR003188 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilised by a centrally located metal ion []. Separation into subunits is thought to occur after phosphorylation.; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3L8R_D 2E2A_B 1E2A_C 3K1S_C 2LRK_C 2LRL_A 2WY2_A 1WCR_A 2WWV_C.
Probab=42.38 E-value=45 Score=22.13 Aligned_cols=30 Identities=20% Similarity=0.240 Sum_probs=17.3
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024419 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAI 34 (268)
Q Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 34 (268)
.+++.....|....+.|+|++|...+.++-
T Consensus 12 G~Ars~~~eAl~~a~~~~fe~A~~~l~~a~ 41 (96)
T PF02255_consen 12 GDARSLAMEALKAAREGDFEEAEELLKEAD 41 (96)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 455556666666666666666666655543
No 490
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=41.78 E-value=3.9e+02 Score=27.06 Aligned_cols=122 Identities=17% Similarity=0.155 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------hHHHHHHHHHHHHcC-------------------------
Q 024419 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN------PTLFSNRAAAFLHLV------------------------- 55 (268)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~------------------------- 55 (268)
.+....+|+.++..|++.+|+..|..|+..--.. +.++-+++.|..-.+
T Consensus 242 gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~~~~ 321 (1185)
T PF08626_consen 242 GRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSSTSSS 321 (1185)
T ss_pred hhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCccCcc
Q ss_pred --------------------------------------ChHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcc--
Q 024419 56 --------------------------------------KLNKALADAETTISLNPQ------WEKGYFRKGCILEAME-- 89 (268)
Q Consensus 56 --------------------------------------~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~-- 89 (268)
.+++|+.+|.++....-+ ..++.++.+..+....
T Consensus 322 s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~~~~ 401 (1185)
T PF08626_consen 322 SPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQHLS 401 (1185)
T ss_pred CcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHhhcc
Q ss_pred ------------------CHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHHHHHh
Q 024419 90 ------------------QYDDALSAFQTALQYNPQS------AEVSRKIKRVSQLAKDKKRA 128 (268)
Q Consensus 90 ------------------~~~~A~~~~~~~l~~~p~~------~~~~~~l~~~~~~~~~~~~a 128 (268)
.-.++.+...+++.....+ ...+..++.+|..+|-..+.
T Consensus 402 ~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l~~~dqi~i~~~lA~vy~~lG~~RK~ 464 (1185)
T PF08626_consen 402 DNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDLSVEDQIRIYSGLASVYGSLGFHRKK 464 (1185)
T ss_pred cchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHhcchhHHH
No 491
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=41.12 E-value=2.1e+02 Score=23.82 Aligned_cols=14 Identities=43% Similarity=0.494 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHhcC
Q 024419 24 LKAAALYTQAIKQD 37 (268)
Q Consensus 24 ~~A~~~~~~al~~~ 37 (268)
++||++..+|+..|
T Consensus 8 ~kaI~lv~kA~~eD 21 (439)
T KOG0739|consen 8 QKAIDLVKKAIDED 21 (439)
T ss_pred HHHHHHHHHHhhhc
Confidence 45666666655544
No 492
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=41.04 E-value=9 Score=34.32 Aligned_cols=100 Identities=16% Similarity=0.044 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHH--hcCC-CChHHHHHHHHHHHHcCChHHHHHHHHH--HHhhCCC-CHHHH
Q 024419 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAI--KQDP-SNPTLFSNRAAAFLHLVKLNKALADAET--TISLNPQ-WEKGY 78 (268)
Q Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al--~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~--al~~~p~-~~~~~ 78 (268)
........-+..++..|++..|...+.+.- .+.| .........|.+....|+++.|+..+.. ...+.+. ....+
T Consensus 22 ~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~~ 101 (536)
T PF04348_consen 22 QRAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARYH 101 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHHH
Confidence 344556677888899999999999998766 2333 3345667778899999999999998874 1122222 24455
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhh
Q 024419 79 FRKGCILEAMEQYDDALSAFQTALQY 104 (268)
Q Consensus 79 ~~la~~~~~~~~~~~A~~~~~~~l~~ 104 (268)
..+|.++...|++-+|...+-..-.+
T Consensus 102 ~l~A~a~~~~~~~l~Aa~~~i~l~~l 127 (536)
T PF04348_consen 102 QLRAQAYEQQGDPLAAARERIALDPL 127 (536)
T ss_dssp --------------------------
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 66788898889888877655544433
No 493
>PF10858 DUF2659: Protein of unknown function (DUF2659); InterPro: IPR022588 This bacterial family of proteins has no known function.
Probab=40.70 E-value=1.5e+02 Score=22.07 Aligned_cols=91 Identities=15% Similarity=0.149 Sum_probs=46.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHcCChHHHHHHHHHHHhh-----C---CCCHHHHHHHH
Q 024419 13 KGNEFFKAGNYLKAAALYTQAIKQDPS--NPTLFSNRAAAFLHLVKLNKALADAETTISL-----N---PQWEKGYFRKG 82 (268)
Q Consensus 13 ~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~---p~~~~~~~~la 82 (268)
..-.-...|.|.+|.+...+.++.... -..+|..+++|.....+-..-+..=.+.++. + |-++.+-...|
T Consensus 99 qva~kis~~~~~eaK~LlnkIi~nk~YSeistsYaRi~wc~~vidD~nl~i~dk~kL~kyL~yfdd~~kPFWatAtI~ka 178 (220)
T PF10858_consen 99 QVAIKISEKKYSEAKQLLNKIIENKEYSEISTSYARINWCCMVIDDQNLNIQDKEKLIKYLNYFDDEKKPFWATATIIKA 178 (220)
T ss_pred HHHHHHhhcchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHheecccccChhhHHHHHHHHhhccCCCCchHHHHHHHHH
Confidence 333445566777777777777665432 3456666677666554322222222222211 1 22233444444
Q ss_pred HHHHHccCHHHHHHHHHHHHh
Q 024419 83 CILEAMEQYDDALSAFQTALQ 103 (268)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~~l~ 103 (268)
.--...|+-.+|++.++..+.
T Consensus 179 iwdik~nm~~~aeknL~~l~~ 199 (220)
T PF10858_consen 179 IWDIKNNMKNQAEKNLKNLLA 199 (220)
T ss_pred HHHHHcCCcHHHHHHHHHHHh
Confidence 444555666666666666553
No 494
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=39.98 E-value=60 Score=27.73 Aligned_cols=11 Identities=27% Similarity=0.326 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q 024419 91 YDDALSAFQTA 101 (268)
Q Consensus 91 ~~~A~~~~~~~ 101 (268)
+..|+++++++
T Consensus 334 ~~~Al~yL~kA 344 (404)
T PF12753_consen 334 IKKALEYLKKA 344 (404)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 33444444444
No 495
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=39.62 E-value=1.8e+02 Score=25.87 Aligned_cols=50 Identities=8% Similarity=-0.050 Sum_probs=40.4
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q 024419 78 YFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKR 127 (268)
Q Consensus 78 ~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~ 127 (268)
...+|.--+..|+|.=+.+.+.+++-.+|++..+....+.++..+|--.+
T Consensus 455 Vl~la~ea~~kGdyrW~a~lln~~VfAdp~n~~Ar~L~Ad~lEQLgYqaE 504 (655)
T COG2015 455 VLELAREAFDKGDYRWAAELLNQAVFADPGNKAARELQADALEQLGYQAE 504 (655)
T ss_pred HHHHHHHHHhcccchHHHHHHhhHHhcCCccHHHHHHHHhHHHHhhhhhc
Confidence 45677777788888888899999999999998888888888887775443
No 496
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=39.37 E-value=2.3e+02 Score=23.65 Aligned_cols=114 Identities=14% Similarity=0.073 Sum_probs=73.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Q 024419 10 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAME 89 (268)
Q Consensus 10 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 89 (268)
+...-..+...|+...|...-.. .++ .+...|...-.++...++|++-.... +. +. .|-.|.-...+....|
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~-Fkv--~dkrfw~lki~aLa~~~~w~eL~~fa-~s-kK---sPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKE-FKV--PDKRFWWLKIKALAENKDWDELEKFA-KS-KK---SPIGYEPFVEACLKYG 251 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHH-cCC--cHHHHHHHHHHHHHhcCCHHHHHHHH-hC-CC---CCCChHHHHHHHHHCC
Confidence 34445566778888777766333 333 46778888999999999998765543 22 23 3455666667777889
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHH
Q 024419 90 QYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDM 140 (268)
Q Consensus 90 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 140 (268)
+..+|..+..+ -|+ ......+...|.+.+|.+........+.
T Consensus 252 ~~~eA~~yI~k----~~~-----~~rv~~y~~~~~~~~A~~~A~~~kd~~~ 293 (319)
T PF04840_consen 252 NKKEASKYIPK----IPD-----EERVEMYLKCGDYKEAAQEAFKEKDIDL 293 (319)
T ss_pred CHHHHHHHHHh----CCh-----HHHHHHHHHCCCHHHHHHHHHHcCCHHH
Confidence 99999988888 222 2333455567777777665433333333
No 497
>PRK10454 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA; Provisional
Probab=38.99 E-value=56 Score=22.54 Aligned_cols=30 Identities=10% Similarity=-0.067 Sum_probs=16.8
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 024419 40 NPTLFSNRAAAFLHLVKLNKALADAETTIS 69 (268)
Q Consensus 40 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 69 (268)
++...+.-|.-..+.|+|++|.+..+++-+
T Consensus 30 ~ArS~~~eAl~~Ak~gdfe~A~~~l~eA~e 59 (115)
T PRK10454 30 QARSLAYAALKQAKQGDFAAAKAMMDQSRM 59 (115)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 444444455555666666666666655543
No 498
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=38.86 E-value=2.2e+02 Score=23.34 Aligned_cols=122 Identities=11% Similarity=0.063 Sum_probs=79.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC--------C--CChHH---HHHHHH-HHHHcCChHHHHHHHHHHHhhCCCCH
Q 024419 10 LKDKGNEFFKAGNYLKAAALYTQAIKQD--------P--SNPTL---FSNRAA-AFLHLVKLNKALADAETTISLNPQWE 75 (268)
Q Consensus 10 ~~~~g~~~~~~~~~~~A~~~~~~al~~~--------p--~~~~~---~~~~a~-~~~~~~~~~~A~~~~~~al~~~p~~~ 75 (268)
+-.-++.+.-..||..|++..+++++.- | .+.+. ++-+|. ++..+++|.+.+...-+..+.-.+.+
T Consensus 38 Le~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklP 117 (309)
T PF07163_consen 38 LEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLP 117 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCC
Confidence 3445667777889999999999998752 1 11122 333443 68889999999998777766543433
Q ss_pred -HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH--HHHHHHH-----HHHHHHHHHHhHHHH
Q 024419 76 -KGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE--VSRKIKR-----VSQLAKDKKRAQEVE 132 (268)
Q Consensus 76 -~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~--~~~~l~~-----~~~~~~~~~~a~~~~ 132 (268)
++.-.--..|.+.+++....+.-..-| .+|+|.. -+..++. ++.=+|.+++|+++.
T Consensus 118 pkIleLCILLysKv~Ep~amlev~~~WL-~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 118 PKILELCILLYSKVQEPAAMLEVASAWL-QDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHH-hCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 344444566788899887776666655 4566521 2344444 444568888888763
No 499
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=38.78 E-value=89 Score=21.33 Aligned_cols=24 Identities=8% Similarity=-0.079 Sum_probs=10.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHH
Q 024419 45 SNRAAAFLHLVKLNKALADAETTI 68 (268)
Q Consensus 45 ~~~a~~~~~~~~~~~A~~~~~~al 68 (268)
+.-|..+...|+.+.|--.|-+.+
T Consensus 42 ~~~A~~~~~egd~E~AYvl~~R~~ 65 (115)
T PF08969_consen 42 LREAEEYRQEGDEEQAYVLYMRYL 65 (115)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334444444555555444444444
No 500
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=38.51 E-value=2.4e+02 Score=23.79 Aligned_cols=70 Identities=13% Similarity=0.093 Sum_probs=47.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419 13 KGNEFFKAGNYLKAAALYTQAIKQ--DPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (268)
Q Consensus 13 ~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 82 (268)
++-......-.+.++...+-.... -......+-.+|..+.++|...+|...|++++.+.++-.+..+.+.
T Consensus 335 RAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~ 406 (415)
T COG4941 335 RAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQ 406 (415)
T ss_pred HHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 333333444455566665554443 1233456777899999999999999999999999888766554443
Done!