Query 024419
Match_columns 268
No_of_seqs 259 out of 3340
Neff 10.7
Searched_HMMs 29240
Date Mon Mar 25 07:55:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024419.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024419hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pl2_A Hypothetical conserved 99.9 3E-26 1E-30 177.5 17.9 171 4-188 2-183 (217)
2 1w3b_A UDP-N-acetylglucosamine 99.9 2.6E-26 8.8E-31 192.5 17.4 128 4-131 64-191 (388)
3 2h6f_A Protein farnesyltransfe 99.9 4E-26 1.4E-30 190.8 17.1 230 3-247 93-354 (382)
4 4eqf_A PEX5-related protein; a 99.9 9.5E-27 3.3E-31 193.5 12.7 241 5-259 63-336 (365)
5 1w3b_A UDP-N-acetylglucosamine 99.9 6.4E-26 2.2E-30 190.1 17.3 246 3-249 97-376 (388)
6 1fch_A Peroxisomal targeting s 99.9 4.3E-25 1.5E-29 183.3 16.9 244 7-265 64-345 (368)
7 3ieg_A DNAJ homolog subfamily 99.9 7.3E-25 2.5E-29 180.7 18.0 240 6-246 2-306 (359)
8 4gco_A Protein STI-1; structur 99.9 2.8E-24 9.5E-29 152.0 17.7 117 3-119 9-125 (126)
9 3hym_B Cell division cycle pro 99.9 1E-24 3.5E-29 178.0 17.6 244 4-248 19-306 (330)
10 3hym_B Cell division cycle pro 99.9 1.6E-24 5.4E-29 176.9 18.2 217 30-247 11-271 (330)
11 2y4t_A DNAJ homolog subfamily 99.9 3.1E-24 1.1E-28 182.9 20.7 130 2-131 21-165 (450)
12 3vtx_A MAMA; tetratricopeptide 99.9 1E-23 3.4E-28 158.7 20.3 171 5-188 3-173 (184)
13 3u4t_A TPR repeat-containing p 99.9 1.1E-24 3.9E-29 173.5 14.9 229 6-249 2-258 (272)
14 3ieg_A DNAJ homolog subfamily 99.9 1.3E-23 4.5E-28 173.1 20.3 243 4-247 34-341 (359)
15 3uq3_A Heat shock protein STI1 99.9 8.1E-24 2.8E-28 166.8 17.7 221 3-246 1-247 (258)
16 3urz_A Uncharacterized protein 99.9 5.1E-23 1.7E-27 158.2 21.1 171 6-188 3-189 (208)
17 4gyw_A UDP-N-acetylglucosamine 99.9 6.6E-24 2.3E-28 190.2 18.5 174 2-188 4-177 (723)
18 4i17_A Hypothetical protein; T 99.9 4.2E-23 1.4E-27 160.6 19.2 130 3-132 3-140 (228)
19 3cv0_A Peroxisome targeting si 99.9 6.3E-24 2.1E-28 173.2 15.0 227 5-245 19-273 (327)
20 2y4t_A DNAJ homolog subfamily 99.9 4.3E-23 1.5E-27 175.8 17.9 243 3-246 56-363 (450)
21 3fp2_A TPR repeat-containing p 99.9 2.3E-22 7.8E-27 175.0 21.2 227 7-248 243-498 (537)
22 4eqf_A PEX5-related protein; a 99.9 8.4E-23 2.9E-27 169.7 16.6 198 3-213 95-314 (365)
23 2pl2_A Hypothetical conserved 99.9 2.4E-22 8.1E-27 155.5 17.0 166 3-182 35-211 (217)
24 2h6f_A Protein farnesyltransfe 99.9 8.3E-23 2.8E-27 170.7 15.3 199 3-213 127-352 (382)
25 1xnf_A Lipoprotein NLPI; TPR, 99.9 5.3E-21 1.8E-25 152.2 24.2 210 3-229 39-262 (275)
26 3fp2_A TPR repeat-containing p 99.9 1.1E-22 3.6E-27 177.1 15.3 103 5-108 23-125 (537)
27 2xpi_A Anaphase-promoting comp 99.9 3.9E-22 1.3E-26 175.8 18.9 245 4-249 302-587 (597)
28 2gw1_A Mitochondrial precursor 99.9 1.5E-22 5E-27 175.1 15.4 231 4-249 234-486 (514)
29 2xpi_A Anaphase-promoting comp 99.9 8.9E-22 3E-26 173.6 20.7 239 9-249 274-553 (597)
30 2gw1_A Mitochondrial precursor 99.9 6.7E-22 2.3E-26 170.9 19.6 238 4-247 3-339 (514)
31 4abn_A Tetratricopeptide repea 99.9 5.9E-22 2E-26 170.6 17.9 172 3-188 98-290 (474)
32 1fch_A Peroxisomal targeting s 99.9 2.2E-22 7.6E-27 166.9 14.6 222 3-238 94-357 (368)
33 2vq2_A PILW, putative fimbrial 99.9 4.7E-21 1.6E-25 147.8 21.1 172 3-187 4-178 (225)
34 3qky_A Outer membrane assembly 99.9 4.8E-21 1.6E-25 152.1 21.6 181 3-213 11-228 (261)
35 2q7f_A YRRB protein; TPR, prot 99.9 6.2E-22 2.1E-26 154.8 15.5 206 5-248 21-229 (243)
36 2ho1_A Type 4 fimbrial biogene 99.9 2.9E-21 1E-25 152.0 18.9 129 3-131 32-163 (252)
37 3cv0_A Peroxisome targeting si 99.9 9.6E-23 3.3E-27 166.1 10.4 228 3-244 51-318 (327)
38 4ga2_A E3 SUMO-protein ligase 99.9 5.2E-22 1.8E-26 144.6 12.7 120 3-122 27-147 (150)
39 4g1t_A Interferon-induced prot 99.9 5.9E-21 2E-25 163.7 20.6 242 5-247 134-465 (472)
40 1xnf_A Lipoprotein NLPI; TPR, 99.9 6.2E-22 2.1E-26 157.6 12.9 221 14-249 12-252 (275)
41 3gyz_A Chaperone protein IPGC; 99.9 2.5E-21 8.4E-26 140.9 14.8 107 3-109 32-138 (151)
42 1ouv_A Conserved hypothetical 99.9 5.1E-21 1.7E-25 152.8 18.0 222 3-247 2-257 (273)
43 3vtx_A MAMA; tetratricopeptide 99.9 4.6E-21 1.6E-25 144.0 16.4 170 38-245 2-174 (184)
44 3upv_A Heat shock protein STI1 99.9 7.9E-21 2.7E-25 134.0 15.9 118 4-121 1-124 (126)
45 4g1t_A Interferon-induced prot 99.9 1.7E-20 5.8E-25 160.9 19.9 122 4-125 48-188 (472)
46 3u4t_A TPR repeat-containing p 99.9 5.6E-21 1.9E-25 152.0 14.4 197 3-213 33-254 (272)
47 2vgx_A Chaperone SYCD; alterna 99.9 2.7E-20 9.1E-25 135.2 16.0 121 3-123 17-137 (148)
48 2xcb_A PCRH, regulatory protei 99.9 3.8E-20 1.3E-24 133.4 16.5 123 3-125 14-136 (142)
49 4abn_A Tetratricopeptide repea 99.8 5.5E-20 1.9E-24 158.4 19.2 194 22-229 83-308 (474)
50 2ond_A Cleavage stimulation fa 99.8 3.4E-19 1.2E-23 145.0 22.4 209 24-248 33-277 (308)
51 2q7f_A YRRB protein; TPR, prot 99.8 1.3E-19 4.5E-24 141.5 19.2 173 3-188 53-225 (243)
52 2yhc_A BAMD, UPF0169 lipoprote 99.8 2.5E-19 8.7E-24 139.2 20.6 178 6-213 3-217 (225)
53 4gcn_A Protein STI-1; structur 99.8 7.5E-20 2.6E-24 129.3 15.3 112 4-116 5-123 (127)
54 3as5_A MAMA; tetratricopeptide 99.8 1.2E-19 4.1E-24 135.5 17.2 172 4-188 5-176 (186)
55 4a1s_A PINS, partner of inscut 99.8 1.4E-19 4.9E-24 152.3 19.7 234 4-245 45-336 (411)
56 4i17_A Hypothetical protein; T 99.8 1.7E-19 5.7E-24 140.2 18.6 203 37-247 3-215 (228)
57 2hr2_A Hypothetical protein; a 99.8 1.9E-20 6.3E-25 135.2 11.4 118 5-122 9-149 (159)
58 4ga2_A E3 SUMO-protein ligase 99.8 3.7E-21 1.3E-25 140.1 7.8 118 13-130 3-120 (150)
59 3sz7_A HSC70 cochaperone (SGT) 99.8 1.6E-19 5.4E-24 133.3 16.7 116 3-118 7-122 (164)
60 3rkv_A Putative peptidylprolyl 99.8 7.1E-20 2.4E-24 134.9 14.6 124 5-128 9-151 (162)
61 4gyw_A UDP-N-acetylglucosamine 99.8 1.9E-20 6.4E-25 167.9 13.7 164 36-212 4-177 (723)
62 3sf4_A G-protein-signaling mod 99.8 6.7E-20 2.3E-24 153.6 15.4 232 5-244 7-299 (406)
63 3ro2_A PINS homolog, G-protein 99.8 6.8E-19 2.3E-23 143.2 20.4 234 4-245 2-296 (338)
64 2c2l_A CHIP, carboxy terminus 99.8 3.2E-19 1.1E-23 143.3 17.2 106 4-109 1-106 (281)
65 1p5q_A FKBP52, FK506-binding p 99.8 6.3E-19 2.1E-23 145.2 19.3 128 3-130 143-285 (336)
66 3nf1_A KLC 1, kinesin light ch 99.8 5.2E-20 1.8E-24 148.8 12.6 237 2-244 22-310 (311)
67 3uq3_A Heat shock protein STI1 99.8 4.2E-19 1.4E-23 139.6 15.9 125 6-130 37-194 (258)
68 3q49_B STIP1 homology and U bo 99.8 9.5E-19 3.2E-23 124.8 15.7 123 3-125 5-132 (137)
69 2ho1_A Type 4 fimbrial biogene 99.8 1.1E-18 3.6E-23 137.3 17.5 130 3-132 67-198 (252)
70 3mkr_A Coatomer subunit epsilo 99.8 8.6E-19 2.9E-23 141.5 17.1 222 4-247 30-270 (291)
71 2vyi_A SGTA protein; chaperone 99.8 1.8E-18 6.3E-23 121.6 16.5 122 3-124 8-129 (131)
72 2lni_A Stress-induced-phosphop 99.8 7.3E-19 2.5E-23 124.3 14.4 122 2-123 11-132 (133)
73 1a17_A Serine/threonine protei 99.8 8.7E-18 3E-22 123.4 20.2 128 5-132 11-140 (166)
74 2fbn_A 70 kDa peptidylprolyl i 99.8 3.3E-18 1.1E-22 130.1 18.3 126 4-129 35-176 (198)
75 2pzi_A Probable serine/threoni 99.8 2.4E-19 8.1E-24 160.8 13.3 168 4-188 391-566 (681)
76 2ond_A Cleavage stimulation fa 99.8 3.3E-18 1.1E-22 139.1 18.3 198 3-213 46-274 (308)
77 2vq2_A PILW, putative fimbrial 99.8 6.3E-18 2.2E-22 130.1 19.0 130 3-132 38-170 (225)
78 1kt0_A FKBP51, 51 kDa FK506-bi 99.8 2.4E-18 8.1E-23 147.4 17.5 129 3-131 264-407 (457)
79 1hxi_A PEX5, peroxisome target 99.8 1.3E-18 4.4E-23 121.9 13.1 104 7-110 17-120 (121)
80 3mkr_A Coatomer subunit epsilo 99.8 2.8E-17 9.7E-22 132.6 22.4 210 4-240 62-287 (291)
81 3ulq_A Response regulator aspa 99.8 3.8E-19 1.3E-23 148.9 11.7 226 10-244 106-371 (383)
82 1elw_A TPR1-domain of HOP; HOP 99.8 1.1E-17 3.8E-22 115.4 17.2 114 6-119 3-116 (118)
83 1qqe_A Vesicular transport pro 99.8 1.8E-18 6.1E-23 139.7 14.9 167 9-188 39-231 (292)
84 3ro2_A PINS homolog, G-protein 99.8 1.1E-18 3.7E-23 142.0 13.7 230 7-244 43-335 (338)
85 3gyz_A Chaperone protein IPGC; 99.8 1.8E-19 6.1E-24 131.0 7.9 110 23-132 18-127 (151)
86 2pzi_A Probable serine/threoni 99.8 1.6E-18 5.4E-23 155.5 15.1 129 3-132 429-557 (681)
87 4a1s_A PINS, partner of inscut 99.8 1.9E-18 6.5E-23 145.5 14.6 230 7-244 86-375 (411)
88 3sf4_A G-protein-signaling mod 99.8 4.3E-18 1.5E-22 142.5 15.8 231 7-245 47-340 (406)
89 1ouv_A Conserved hypothetical 99.8 2.4E-17 8.4E-22 131.4 19.4 189 4-213 35-255 (273)
90 3qky_A Outer membrane assembly 99.8 1.2E-17 4E-22 132.5 17.3 118 7-124 52-200 (261)
91 3urz_A Uncharacterized protein 99.8 1.7E-17 5.7E-22 127.3 17.5 161 39-212 2-189 (208)
92 2r5s_A Uncharacterized protein 99.8 6.6E-19 2.2E-23 131.5 9.3 129 3-132 2-131 (176)
93 4gco_A Protein STI-1; structur 99.8 3.4E-18 1.2E-22 120.6 12.1 100 32-131 4-103 (126)
94 1na0_A Designed protein CTPR3; 99.8 3.8E-17 1.3E-21 113.8 17.2 117 6-122 8-124 (125)
95 3qou_A Protein YBBN; thioredox 99.8 5.8E-18 2E-22 136.4 14.0 167 4-183 114-282 (287)
96 2dba_A Smooth muscle cell asso 99.8 2.3E-17 8E-22 118.7 15.5 117 3-119 24-143 (148)
97 1elr_A TPR2A-domain of HOP; HO 99.8 2.8E-17 9.7E-22 115.5 15.3 120 4-124 1-127 (131)
98 2xev_A YBGF; tetratricopeptide 99.8 3.1E-17 1.1E-21 115.6 15.3 113 8-120 3-121 (129)
99 3as5_A MAMA; tetratricopeptide 99.8 5.9E-17 2E-21 120.7 17.4 130 3-132 38-167 (186)
100 1ihg_A Cyclophilin 40; ppiase 99.8 3.3E-17 1.1E-21 136.5 16.8 127 5-131 221-363 (370)
101 1wao_1 Serine/threonine protei 99.8 1.6E-18 5.3E-23 149.3 8.8 130 3-132 2-133 (477)
102 2fo7_A Synthetic consensus TPR 99.7 8.9E-17 3E-21 113.3 16.0 124 8-131 2-125 (136)
103 3edt_B KLC 2, kinesin light ch 99.7 4.9E-17 1.7E-21 129.3 16.2 130 3-132 39-192 (283)
104 1qqe_A Vesicular transport pro 99.7 1.7E-17 5.9E-22 133.9 13.7 188 5-200 75-284 (292)
105 3ulq_A Response regulator aspa 99.7 4.7E-17 1.6E-21 136.1 15.4 199 4-213 140-372 (383)
106 2vgx_A Chaperone SYCD; alterna 99.7 2.2E-17 7.6E-22 119.7 11.5 106 26-131 6-111 (148)
107 2vsy_A XCC0866; transferase, g 99.7 3.4E-17 1.2E-21 144.0 14.9 127 4-130 20-149 (568)
108 1hh8_A P67PHOX, NCF-2, neutrop 99.7 1.6E-16 5.3E-21 121.8 16.0 125 4-131 3-143 (213)
109 2vsy_A XCC0866; transferase, g 99.7 1.5E-16 5E-21 140.0 17.6 113 20-132 2-114 (568)
110 3q15_A PSP28, response regulat 99.7 2.7E-17 9.1E-22 137.4 11.9 225 9-242 103-366 (378)
111 2e2e_A Formate-dependent nitri 99.7 2.5E-16 8.5E-21 117.3 15.9 108 4-111 41-151 (177)
112 2kck_A TPR repeat; tetratricop 99.7 3.9E-17 1.3E-21 111.6 10.3 107 3-109 2-111 (112)
113 1zu2_A Mitochondrial import re 99.7 5.4E-17 1.9E-21 116.8 11.0 99 18-116 13-132 (158)
114 3dra_A Protein farnesyltransfe 99.7 5.8E-16 2E-20 125.0 18.1 227 6-246 31-293 (306)
115 2xcb_A PCRH, regulatory protei 99.7 1.4E-16 4.8E-21 114.5 13.1 105 28-132 5-109 (142)
116 3nf1_A KLC 1, kinesin light ch 99.7 1.9E-16 6.6E-21 127.7 14.0 130 3-132 65-218 (311)
117 3edt_B KLC 2, kinesin light ch 99.7 4.2E-17 1.4E-21 129.6 9.4 166 18-188 12-201 (283)
118 3k9i_A BH0479 protein; putativ 99.7 1.7E-17 5.9E-22 115.3 6.3 97 19-115 2-101 (117)
119 3dss_A Geranylgeranyl transfer 99.7 1.9E-14 6.4E-19 116.9 24.5 181 2-188 59-270 (331)
120 2yhc_A BAMD, UPF0169 lipoprote 99.7 6.1E-16 2.1E-20 120.0 15.2 127 6-132 40-207 (225)
121 3dra_A Protein farnesyltransfe 99.7 1.3E-15 4.5E-20 122.9 17.1 198 3-213 63-292 (306)
122 2if4_A ATFKBP42; FKBP-like, al 99.7 5.4E-17 1.9E-21 133.7 9.1 125 4-128 176-318 (338)
123 2e2e_A Formate-dependent nitri 99.7 8.8E-16 3E-20 114.3 13.8 116 16-131 19-137 (177)
124 4gcn_A Protein STI-1; structur 99.7 4.1E-16 1.4E-20 110.0 10.5 90 40-129 7-103 (127)
125 3dss_A Geranylgeranyl transfer 99.7 2.5E-14 8.4E-19 116.2 21.9 217 14-246 36-309 (331)
126 2r5s_A Uncharacterized protein 99.7 6.2E-16 2.1E-20 115.2 11.7 128 3-131 36-166 (176)
127 2ooe_A Cleavage stimulation fa 99.7 1.5E-14 5.1E-19 126.1 22.1 208 24-245 255-496 (530)
128 2c2l_A CHIP, carboxy terminus 99.7 2.4E-14 8.4E-19 114.8 20.0 191 38-242 1-200 (281)
129 1p5q_A FKBP52, FK506-binding p 99.6 1.9E-16 6.4E-21 130.4 7.5 151 20-183 126-292 (336)
130 3upv_A Heat shock protein STI1 99.6 5.6E-15 1.9E-19 103.7 13.8 95 38-132 1-95 (126)
131 3q15_A PSP28, response regulat 99.6 7.4E-15 2.5E-19 122.6 16.6 198 3-211 137-367 (378)
132 1hh8_A P67PHOX, NCF-2, neutrop 99.6 6.6E-15 2.2E-19 112.7 15.0 104 6-109 36-155 (213)
133 2qfc_A PLCR protein; TPR, HTH, 99.6 2.6E-14 8.8E-19 115.2 19.0 176 4-186 72-267 (293)
134 3qou_A Protein YBBN; thioredox 99.6 1.6E-15 5.3E-20 122.1 11.2 129 3-131 147-277 (287)
135 2ifu_A Gamma-SNAP; membrane fu 99.6 2.8E-15 9.7E-20 121.7 11.2 172 8-188 37-226 (307)
136 2ooe_A Cleavage stimulation fa 99.6 1.7E-14 6E-19 125.7 16.6 197 3-212 268-495 (530)
137 2xm6_A Protein corresponding t 99.6 7.5E-14 2.6E-18 120.5 20.3 232 4-243 36-327 (490)
138 2fo7_A Synthetic consensus TPR 99.6 2.7E-14 9.1E-19 100.4 14.5 106 3-108 31-136 (136)
139 1hxi_A PEX5, peroxisome target 99.6 2.7E-14 9.4E-19 99.6 14.0 91 42-132 18-108 (121)
140 2kat_A Uncharacterized protein 99.6 3.4E-14 1.2E-18 98.0 14.2 101 24-124 2-104 (115)
141 3sz7_A HSC70 cochaperone (SGT) 99.6 5.2E-14 1.8E-18 103.4 15.6 95 37-131 7-101 (164)
142 2xm6_A Protein corresponding t 99.6 1.3E-13 4.4E-18 119.0 20.4 229 5-241 73-360 (490)
143 2l6j_A TPR repeat-containing p 99.6 9E-16 3.1E-20 105.0 5.5 95 6-100 3-103 (111)
144 3rjv_A Putative SEL1 repeat pr 99.6 2.9E-14 1E-18 109.5 14.5 123 4-131 15-151 (212)
145 1hz4_A MALT regulatory protein 99.6 1.8E-14 6.1E-19 119.8 14.0 223 8-244 54-325 (373)
146 1dce_A Protein (RAB geranylger 99.6 5.6E-15 1.9E-19 129.4 11.3 120 3-122 59-191 (567)
147 1hz4_A MALT regulatory protein 99.6 1.6E-13 5.6E-18 114.0 19.3 230 6-244 13-285 (373)
148 1dce_A Protein (RAB geranylger 99.6 1.9E-14 6.4E-19 126.1 13.9 164 12-188 33-224 (567)
149 3q49_B STIP1 homology and U bo 99.6 4.7E-14 1.6E-18 100.1 13.4 97 35-131 3-99 (137)
150 1na3_A Designed protein CTPR2; 99.6 5.5E-14 1.9E-18 92.4 12.7 86 3-88 5-90 (91)
151 1a17_A Serine/threonine protei 99.6 1.8E-13 6E-18 100.1 16.7 133 40-185 12-146 (166)
152 2fbn_A 70 kDa peptidylprolyl i 99.6 7.1E-15 2.4E-19 111.5 8.5 122 10-131 7-144 (198)
153 3u3w_A Transcriptional activat 99.6 1.3E-13 4.3E-18 111.2 16.0 175 6-187 74-268 (293)
154 2ifu_A Gamma-SNAP; membrane fu 99.6 1.4E-13 4.8E-18 111.7 16.1 186 20-214 4-228 (307)
155 1kt0_A FKBP51, 51 kDa FK506-bi 99.6 3.9E-15 1.3E-19 127.5 7.0 144 21-177 248-406 (457)
156 2hr2_A Hypothetical protein; a 99.6 5.7E-14 2E-18 101.3 11.9 91 41-131 11-124 (159)
157 3q7a_A Farnesyltransferase alp 99.5 1.8E-12 6.2E-17 105.8 21.6 171 5-188 52-240 (349)
158 2kck_A TPR repeat; tetratricop 99.5 3.2E-14 1.1E-18 96.9 8.8 97 36-132 1-100 (112)
159 2lni_A Stress-induced-phosphop 99.5 3.1E-13 1.1E-17 94.9 13.4 96 37-132 12-107 (133)
160 3ro3_A PINS homolog, G-protein 99.5 1.2E-13 4.1E-18 100.2 11.5 128 4-131 6-151 (164)
161 4f3v_A ESX-1 secretion system 99.5 7.3E-15 2.5E-19 116.2 4.6 166 5-183 5-198 (282)
162 2l6j_A TPR repeat-containing p 99.5 1.1E-13 3.7E-18 94.4 9.9 90 40-129 3-98 (111)
163 1na3_A Designed protein CTPR2; 99.5 2.4E-13 8.1E-18 89.2 11.2 84 39-122 7-90 (91)
164 3gw4_A Uncharacterized protein 99.5 4.8E-13 1.7E-17 101.2 13.8 164 17-187 2-178 (203)
165 2kc7_A BFR218_protein; tetratr 99.5 5.6E-14 1.9E-18 94.1 7.6 92 10-109 3-95 (99)
166 2qfc_A PLCR protein; TPR, HTH, 99.5 9.2E-13 3.1E-17 106.1 15.6 125 7-131 115-259 (293)
167 2vyi_A SGTA protein; chaperone 99.5 2.9E-13 9.9E-18 94.6 10.8 97 35-131 6-102 (131)
168 1zu2_A Mitochondrial import re 99.5 3.2E-13 1.1E-17 97.2 11.0 101 52-188 13-123 (158)
169 3ma5_A Tetratricopeptide repea 99.5 6.1E-13 2.1E-17 89.4 11.5 83 36-118 2-86 (100)
170 3rkv_A Putative peptidylprolyl 99.5 4.7E-13 1.6E-17 98.0 11.8 92 40-131 10-119 (162)
171 3q7a_A Farnesyltransferase alp 99.5 1.5E-12 5.1E-17 106.2 15.2 122 3-124 84-216 (349)
172 3gw4_A Uncharacterized protein 99.5 4.2E-13 1.4E-17 101.5 11.2 127 5-131 24-169 (203)
173 1xi4_A Clathrin heavy chain; a 99.5 1.4E-12 4.9E-17 121.1 16.5 206 13-246 1055-1314(1630)
174 3e4b_A ALGK; tetratricopeptide 99.5 5.9E-12 2E-16 107.6 19.3 215 5-243 139-389 (452)
175 3u3w_A Transcriptional activat 99.5 3.7E-13 1.3E-17 108.4 11.0 123 9-131 117-259 (293)
176 1elw_A TPR1-domain of HOP; HOP 99.4 1.7E-12 5.8E-17 89.0 12.3 92 40-131 3-94 (118)
177 1na0_A Designed protein CTPR3; 99.4 4.7E-12 1.6E-16 87.6 14.2 96 36-131 3-99 (125)
178 2dba_A Smooth muscle cell asso 99.4 2.4E-12 8.2E-17 92.1 12.8 97 36-132 23-122 (148)
179 2xev_A YBGF; tetratricopeptide 99.4 1.5E-12 5.1E-17 91.2 11.1 91 42-132 3-99 (129)
180 3k9i_A BH0479 protein; putativ 99.4 1.9E-12 6.6E-17 89.5 11.1 82 3-84 23-104 (117)
181 1wao_1 Serine/threonine protei 99.4 3.2E-13 1.1E-17 116.2 7.9 108 3-110 36-156 (477)
182 3e4b_A ALGK; tetratricopeptide 99.4 4.7E-12 1.6E-16 108.2 14.8 184 6-211 175-389 (452)
183 3ma5_A Tetratricopeptide repea 99.4 2E-12 6.7E-17 86.9 9.9 88 1-88 1-90 (100)
184 1elr_A TPR2A-domain of HOP; HO 99.4 2.9E-12 9.8E-17 89.5 10.6 94 39-132 2-102 (131)
185 1xi4_A Clathrin heavy chain; a 99.4 8.3E-11 2.8E-15 109.6 21.6 115 5-132 1103-1244(1630)
186 3rjv_A Putative SEL1 repeat pr 99.4 3.3E-12 1.1E-16 98.0 10.6 124 4-131 47-190 (212)
187 2if4_A ATFKBP42; FKBP-like, al 99.3 1.1E-12 3.8E-17 107.9 6.9 103 8-110 231-334 (338)
188 4b4t_Q 26S proteasome regulato 99.3 2.4E-11 8.2E-16 102.7 14.9 199 1-209 1-245 (434)
189 3n71_A Histone lysine methyltr 99.3 2.2E-11 7.6E-16 104.5 13.1 125 8-132 310-458 (490)
190 1ihg_A Cyclophilin 40; ppiase 99.3 2.9E-11 1E-15 100.6 13.0 94 3-96 269-362 (370)
191 1b89_A Protein (clathrin heavy 99.3 4.6E-13 1.6E-17 111.9 1.3 200 7-245 32-240 (449)
192 2kc7_A BFR218_protein; tetratr 99.3 5.3E-11 1.8E-15 79.3 11.3 71 44-114 3-74 (99)
193 4f3v_A ESX-1 secretion system 99.3 4.7E-11 1.6E-15 94.5 12.6 125 7-132 102-231 (282)
194 1pc2_A Mitochondria fission pr 99.3 1.4E-10 4.7E-15 82.6 12.8 99 22-120 13-116 (152)
195 3bee_A Putative YFRE protein; 99.3 1.5E-10 5.2E-15 76.3 12.0 74 37-110 2-78 (93)
196 2kat_A Uncharacterized protein 99.3 4.7E-11 1.6E-15 82.0 10.0 87 3-89 15-103 (115)
197 3ro3_A PINS homolog, G-protein 99.2 9.4E-11 3.2E-15 84.6 10.5 101 7-107 49-161 (164)
198 3mv2_B Coatomer subunit epsilo 99.2 7.7E-10 2.6E-14 88.7 15.1 124 7-131 100-233 (310)
199 3mv2_B Coatomer subunit epsilo 99.2 5.1E-09 1.7E-13 83.9 18.8 169 26-213 85-286 (310)
200 4e6h_A MRNA 3'-END-processing 99.1 6.9E-09 2.4E-13 92.4 20.8 207 24-246 326-575 (679)
201 1b89_A Protein (clathrin heavy 99.1 8.2E-12 2.8E-16 104.4 1.7 110 5-129 59-168 (449)
202 3bee_A Putative YFRE protein; 99.1 3.4E-10 1.2E-14 74.6 8.8 74 2-75 1-77 (93)
203 4b4t_Q 26S proteasome regulato 99.1 3.5E-10 1.2E-14 95.5 10.7 127 6-132 54-198 (434)
204 2v5f_A Prolyl 4-hydroxylase su 99.1 2.5E-09 8.6E-14 72.1 11.2 75 7-81 5-86 (104)
205 2v5f_A Prolyl 4-hydroxylase su 99.1 5.6E-09 1.9E-13 70.3 12.5 80 40-119 4-90 (104)
206 1klx_A Cysteine rich protein B 99.0 4.4E-09 1.5E-13 74.7 12.0 104 21-132 9-120 (138)
207 3qwp_A SET and MYND domain-con 99.0 2.5E-09 8.5E-14 90.5 11.6 106 8-113 288-414 (429)
208 3qww_A SET and MYND domain-con 99.0 2.9E-09 9.8E-14 90.0 11.9 99 14-112 305-424 (433)
209 4e6h_A MRNA 3'-END-processing 99.0 1.1E-08 3.9E-13 91.0 16.0 198 3-213 339-574 (679)
210 1klx_A Cysteine rich protein B 99.0 5.5E-09 1.9E-13 74.2 11.3 98 13-116 31-136 (138)
211 3ly7_A Transcriptional activat 99.0 1.5E-08 5.2E-13 82.7 14.2 126 6-132 195-333 (372)
212 3u64_A Protein TP_0956; tetrat 99.0 1.2E-08 4.2E-13 80.1 12.6 106 3-108 148-273 (301)
213 3n71_A Histone lysine methyltr 98.9 6.1E-09 2.1E-13 89.4 9.1 103 3-105 347-465 (490)
214 1nzn_A CGI-135 protein, fissio 98.8 9.5E-08 3.3E-12 65.5 12.0 102 18-119 12-118 (126)
215 1pc2_A Mitochondria fission pr 98.7 4.6E-08 1.6E-12 69.6 8.3 80 4-83 29-113 (152)
216 3ly7_A Transcriptional activat 98.6 4.2E-07 1.4E-11 74.2 11.1 75 35-110 271-345 (372)
217 3u64_A Protein TP_0956; tetrat 98.5 5.2E-06 1.8E-10 65.3 14.1 97 35-131 146-262 (301)
218 3ffl_A Anaphase-promoting comp 98.5 2.2E-06 7.5E-11 61.4 10.6 111 8-119 21-165 (167)
219 4h7y_A Dual specificity protei 98.4 9E-06 3.1E-10 57.0 12.4 111 2-113 8-132 (161)
220 2uy1_A Cleavage stimulation fa 98.3 6.3E-05 2.2E-09 64.8 18.6 126 4-131 210-376 (493)
221 3qwp_A SET and MYND domain-con 98.3 1.7E-06 5.9E-11 73.1 8.2 84 3-86 325-424 (429)
222 3qww_A SET and MYND domain-con 98.3 2.7E-06 9.3E-11 71.8 9.2 75 3-77 336-423 (433)
223 3o48_A Mitochondria fission 1 98.2 3.4E-05 1.2E-09 53.0 12.0 82 39-120 38-123 (134)
224 1y8m_A FIS1; mitochondria, unk 98.2 0.0001 3.5E-09 51.3 14.5 82 37-118 35-120 (144)
225 1nzn_A CGI-135 protein, fissio 98.1 1.4E-05 4.9E-10 54.7 7.9 80 5-84 33-117 (126)
226 3o48_A Mitochondria fission 1 97.8 0.00032 1.1E-08 48.2 10.1 79 6-84 39-121 (134)
227 1y8m_A FIS1; mitochondria, unk 97.7 0.00062 2.1E-08 47.4 10.9 78 5-82 37-118 (144)
228 2uy1_A Cleavage stimulation fa 97.7 0.0014 4.9E-08 56.3 15.1 119 7-130 286-405 (493)
229 4h7y_A Dual specificity protei 97.6 0.00052 1.8E-08 48.2 8.6 96 35-131 7-116 (161)
230 3ffl_A Anaphase-promoting comp 97.5 0.00084 2.9E-08 48.1 9.3 92 42-133 21-146 (167)
231 3kae_A CDC27, possible protein 97.2 0.019 6.5E-07 41.2 13.4 100 8-112 34-151 (242)
232 1ya0_A SMG-7 transcript varian 97.1 0.0054 1.9E-07 52.5 11.6 80 43-122 154-233 (497)
233 4g26_A Pentatricopeptide repea 97.1 0.052 1.8E-06 46.7 17.4 112 22-133 85-199 (501)
234 2ff4_A Probable regulatory pro 97.0 0.027 9.1E-07 46.8 14.9 94 9-102 117-232 (388)
235 1ya0_A SMG-7 transcript varian 96.9 0.0093 3.2E-07 51.1 11.2 79 9-87 154-232 (497)
236 4g26_A Pentatricopeptide repea 96.9 0.04 1.4E-06 47.4 14.9 111 6-117 104-218 (501)
237 4gns_B Protein CSD3, chitin bi 96.8 0.0047 1.6E-07 55.5 9.1 61 7-67 337-397 (754)
238 1zbp_A Hypothetical protein VP 96.8 0.03 1E-06 43.5 11.8 62 15-76 5-66 (273)
239 4gns_B Protein CSD3, chitin bi 96.6 0.013 4.4E-07 52.7 10.3 111 20-131 261-393 (754)
240 4b4t_R RPN7, 26S proteasome re 96.0 0.063 2.2E-06 45.2 10.7 99 9-107 133-240 (429)
241 3txn_A 26S proteasome regulato 95.9 0.13 4.3E-06 42.7 11.8 95 11-105 103-211 (394)
242 3mkq_A Coatomer beta'-subunit; 95.8 0.2 6.8E-06 45.3 13.9 103 11-129 633-743 (814)
243 2ff4_A Probable regulatory pro 95.6 0.071 2.4E-06 44.2 9.5 62 8-69 172-233 (388)
244 3mkq_B Coatomer subunit alpha; 95.6 0.31 1.1E-05 35.4 11.5 68 15-95 13-80 (177)
245 1zbp_A Hypothetical protein VP 95.5 0.15 5E-06 39.6 10.0 63 50-112 6-68 (273)
246 3mkq_A Coatomer beta'-subunit; 95.1 0.42 1.4E-05 43.2 13.5 106 15-141 607-713 (814)
247 4b4t_P 26S proteasome regulato 94.9 0.7 2.4E-05 39.0 13.6 99 6-104 136-247 (445)
248 4fhn_B Nucleoporin NUP120; pro 94.2 1.5 5.3E-05 41.7 15.2 93 8-100 843-963 (1139)
249 4fhn_B Nucleoporin NUP120; pro 94.0 1 3.6E-05 42.8 13.8 116 12-131 817-960 (1139)
250 3spa_A Mtrpol, DNA-directed RN 94.0 1.6 5.4E-05 40.8 14.2 96 8-104 128-230 (1134)
251 3txn_A 26S proteasome regulato 93.8 1.2 4.2E-05 36.8 12.3 124 8-131 20-161 (394)
252 3mkq_B Coatomer subunit alpha; 92.1 2.5 8.5E-05 30.6 14.7 55 39-101 6-60 (177)
253 4b4t_S RPN3, 26S proteasome re 89.9 0.97 3.3E-05 38.7 7.4 66 41-108 231-303 (523)
254 4b4t_R RPN7, 26S proteasome re 89.3 0.77 2.6E-05 38.5 6.4 65 40-104 130-197 (429)
255 1qsa_A Protein (soluble lytic 89.3 1.7 5.8E-05 38.3 8.7 80 23-103 268-347 (618)
256 4gq2_M Nucleoporin NUP120; bet 87.4 8.3 0.00028 36.0 12.4 95 12-110 815-933 (950)
257 3ax2_A Mitochondrial import re 87.4 2.3 7.7E-05 25.7 5.8 32 11-42 21-52 (73)
258 4b4t_S RPN3, 26S proteasome re 87.3 1.5 5E-05 37.6 6.7 68 5-74 229-303 (523)
259 3spa_A Mtrpol, DNA-directed RN 86.5 15 0.00051 34.6 13.1 89 42-131 128-223 (1134)
260 1wy6_A Hypothetical protein ST 85.3 6.2 0.00021 27.3 7.7 55 50-104 100-154 (172)
261 4a5x_A MITD1, MIT domain-conta 85.2 1.8 6.2E-05 27.2 4.8 30 6-35 15-44 (86)
262 3esl_A Checkpoint serine/threo 82.3 11 0.00037 27.8 8.6 77 28-105 58-145 (202)
263 2cfu_A SDSA1; SDS-hydrolase, l 82.0 3 0.0001 37.1 6.7 47 43-89 451-497 (658)
264 1wy6_A Hypothetical protein ST 81.9 9.9 0.00034 26.4 7.6 120 8-132 8-148 (172)
265 3kae_A CDC27, possible protein 81.6 13 0.00043 26.9 18.4 109 16-132 11-137 (242)
266 3re2_A Predicted protein; meni 80.6 18 0.00062 29.4 9.8 59 60-118 276-345 (472)
267 2w2u_A Hypothetical P60 katani 79.7 2.9 0.0001 26.0 4.2 16 87-102 31-46 (83)
268 3t5x_A PCI domain-containing p 79.5 7 0.00024 28.9 7.0 38 4-41 11-48 (203)
269 2crb_A Nuclear receptor bindin 78.9 4.3 0.00015 25.6 4.6 28 7-34 15-42 (97)
270 2vkj_A TM1634; membrane protei 78.9 3.6 0.00012 25.7 4.2 32 5-36 51-82 (106)
271 2v6y_A AAA family ATPase, P60 78.9 3.2 0.00011 25.8 4.2 11 59-69 10-20 (83)
272 2w2u_A Hypothetical P60 katani 78.2 9.7 0.00033 23.6 7.5 29 7-35 19-47 (83)
273 1qsa_A Protein (soluble lytic 78.2 33 0.0011 30.2 11.9 121 11-132 218-342 (618)
274 2crb_A Nuclear receptor bindin 77.0 5.4 0.00019 25.2 4.7 26 43-68 17-42 (97)
275 3ax2_A Mitochondrial import re 76.1 10 0.00036 22.8 6.2 33 79-111 21-53 (73)
276 1om2_A Protein (mitochondrial 75.2 4.1 0.00014 26.0 3.9 29 11-39 24-52 (95)
277 3u84_A Menin; MLL, JUND, ledgf 75.2 30 0.001 28.8 9.7 60 60-119 298-368 (550)
278 2v6x_A Vacuolar protein sortin 75.0 6.4 0.00022 24.4 4.9 25 10-34 16-40 (85)
279 3t5x_A PCI domain-containing p 74.5 11 0.00036 27.9 6.7 35 41-75 14-48 (203)
280 2ijq_A Hypothetical protein; s 73.6 21 0.00073 25.2 9.2 61 9-69 34-103 (161)
281 1wfd_A Hypothetical protein 15 73.0 7.5 0.00026 24.7 4.9 15 54-68 28-42 (93)
282 2v6y_A AAA family ATPase, P60 72.3 14 0.0005 22.7 7.5 29 7-35 11-39 (83)
283 3t5v_B Nuclear mRNA export pro 71.8 13 0.00044 31.3 7.3 87 22-108 141-254 (455)
284 2cpt_A SKD1 protein, vacuolar 70.7 8.2 0.00028 25.7 4.8 16 54-69 31-46 (117)
285 4gq4_A Menin; tumor suppressor 70.2 46 0.0016 27.6 10.7 61 59-119 282-353 (489)
286 2rpa_A Katanin P60 ATPase-cont 70.2 8 0.00027 23.7 4.2 25 11-35 16-40 (78)
287 1wfd_A Hypothetical protein 15 68.3 7.9 0.00027 24.5 4.2 32 57-103 12-43 (93)
288 4gq2_M Nucleoporin NUP120; bet 66.1 27 0.00091 32.6 8.8 71 6-76 839-933 (950)
289 2cfu_A SDSA1; SDS-hydrolase, l 64.7 17 0.0006 32.2 7.1 54 74-127 448-501 (658)
290 4b4t_P 26S proteasome regulato 64.6 62 0.0021 27.0 15.7 102 76-184 138-246 (445)
291 2cpt_A SKD1 protein, vacuolar 63.3 9.6 0.00033 25.4 4.0 32 57-103 15-46 (117)
292 2rpa_A Katanin P60 ATPase-cont 61.2 11 0.00037 23.1 3.6 25 45-69 16-40 (78)
293 1om2_A Protein (mitochondrial 61.0 17 0.00057 23.2 4.6 29 79-107 24-52 (95)
294 2yhe_A SEC-alkyl sulfatase; hy 61.9 2.2 7.6E-05 38.0 0.0 49 8-56 462-510 (668)
295 3t5v_B Nuclear mRNA export pro 56.8 30 0.001 29.1 6.8 63 12-74 181-254 (455)
296 4a5x_A MITD1, MIT domain-conta 56.2 24 0.00081 21.9 4.7 13 52-64 27-39 (86)
297 3re2_A Predicted protein; meni 56.0 52 0.0018 26.8 7.5 45 26-70 276-325 (472)
298 2cwy_A Hypothetical protein TT 51.3 43 0.0015 21.1 6.3 28 12-39 6-33 (94)
299 2vkj_A TM1634; membrane protei 48.6 47 0.0016 20.8 5.2 30 41-70 53-82 (106)
300 2v6x_A Vacuolar protein sortin 48.5 37 0.0012 20.9 4.7 10 59-68 12-21 (85)
301 3myv_A SUSD superfamily protei 46.7 61 0.0021 27.1 7.2 26 43-68 192-217 (454)
302 2dl1_A Spartin; SPG20, MIT, st 45.7 31 0.0011 22.8 4.1 36 165-205 12-47 (116)
303 3bu8_A Telomeric repeat-bindin 45.0 23 0.00077 26.4 3.7 38 50-87 123-160 (235)
304 2e2a_A Protein (enzyme IIA); h 44.6 27 0.00091 22.7 3.6 24 44-67 23-46 (105)
305 3bqo_A Telomeric repeat-bindin 44.6 19 0.00065 26.4 3.2 32 16-47 126-157 (211)
306 3lpz_A GET4 (YOR164C homolog); 44.1 1.2E+02 0.0042 24.3 14.9 26 5-30 134-159 (336)
307 1wcr_A PTS system, N, N'-diace 44.0 28 0.00095 22.5 3.6 29 5-33 16-44 (103)
308 3kez_A Putative sugar binding 43.1 66 0.0023 26.9 6.9 28 76-103 197-224 (461)
309 3lew_A SUSD-like carbohydrate 42.7 74 0.0025 27.0 7.2 29 42-70 204-232 (495)
310 2dl1_A Spartin; SPG20, MIT, st 42.6 52 0.0018 21.8 4.8 18 21-38 17-34 (116)
311 2wpv_A GET4, UPF0363 protein Y 41.7 1.3E+02 0.0044 23.8 11.8 25 9-33 35-59 (312)
312 3mcx_A SUSD superfamily protei 41.0 74 0.0025 26.8 6.9 28 42-69 203-230 (477)
313 4gq4_A Menin; tumor suppressor 40.7 1.2E+02 0.0041 25.3 7.5 45 25-69 282-331 (489)
314 4abx_A DNA repair protein RECN 40.3 97 0.0033 22.0 8.3 49 59-107 74-122 (175)
315 3u84_A Menin; MLL, JUND, ledgf 39.7 73 0.0025 26.5 6.1 44 26-69 298-346 (550)
316 3k1s_A PTS system, cellobiose- 39.2 36 0.0012 22.3 3.6 28 6-33 21-48 (109)
317 3esl_A Checkpoint serine/threo 39.1 1.1E+02 0.0039 22.4 9.1 53 20-72 92-146 (202)
318 3myv_A SUSD superfamily protei 37.6 1.1E+02 0.0036 25.6 7.3 47 57-103 164-218 (454)
319 3lew_A SUSD-like carbohydrate 36.9 1.1E+02 0.0036 26.0 7.3 48 58-105 175-233 (495)
320 3l8r_A PTCA, putative PTS syst 36.7 41 0.0014 22.4 3.6 29 40-68 36-64 (120)
321 3lpz_A GET4 (YOR164C homolog); 34.7 1.8E+02 0.0061 23.4 12.7 25 9-33 37-61 (336)
322 3kez_A Putative sugar binding 34.6 1.2E+02 0.0039 25.5 7.1 23 109-131 196-218 (461)
323 4b4t_O 26S proteasome regulato 34.5 1.9E+02 0.0064 23.6 10.7 88 16-103 85-197 (393)
324 2ijq_A Hypothetical protein; s 33.5 1.2E+02 0.0043 21.3 8.3 61 44-104 35-104 (161)
325 4aez_C MAD3, mitotic spindle c 33.3 1.5E+02 0.0052 22.1 9.3 47 59-105 132-180 (223)
326 2uwj_G Type III export protein 32.4 99 0.0034 20.0 4.7 72 21-98 20-91 (115)
327 2p58_C Putative type III secre 32.0 1E+02 0.0036 19.9 5.7 72 21-98 21-92 (116)
328 3mcx_A SUSD superfamily protei 31.5 1.3E+02 0.0044 25.3 6.9 48 57-104 176-231 (477)
329 3mv2_A Coatomer subunit alpha; 30.3 2.1E+02 0.0071 22.8 9.7 29 78-106 117-145 (325)
330 3dza_A Uncharacterized putativ 29.6 1.6E+02 0.0056 21.4 6.2 64 6-69 107-178 (191)
331 2xze_A STAM-binding protein; h 28.6 95 0.0033 21.4 4.6 27 43-69 42-68 (146)
332 2pmr_A Uncharacterized protein 28.1 1.1E+02 0.0038 19.0 4.4 25 43-67 41-65 (87)
333 3qnk_A Putative lipoprotein; a 27.5 1.7E+02 0.0058 24.9 7.0 28 76-103 183-210 (517)
334 2oo2_A Hypothetical protein AF 27.4 1.1E+02 0.0039 18.9 4.4 24 7-30 35-58 (86)
335 3eab_A Spastin; spastin, MIT, 27.2 53 0.0018 20.6 2.7 18 21-38 11-28 (89)
336 3hdx_A SUSD homolog, SUSD supe 27.2 1.7E+02 0.0057 24.6 6.9 29 42-70 198-226 (478)
337 4aez_C MAD3, mitotic spindle c 26.2 1.1E+02 0.0036 23.0 4.8 27 44-70 153-179 (223)
338 3bqo_A Telomeric repeat-bindin 26.2 44 0.0015 24.5 2.6 38 81-118 123-160 (211)
339 2yhe_A SEC-alkyl sulfatase; hy 31.8 14 0.00049 32.8 0.0 51 43-93 463-513 (668)
340 3bu8_A Telomeric repeat-bindin 25.7 2.1E+02 0.0072 21.4 7.4 40 82-121 121-160 (235)
341 3snx_A SUSD homolog, putative 24.1 1.4E+02 0.0046 25.1 5.7 28 42-69 192-219 (460)
342 1o9d_A 14-3-3-like protein C; 22.4 2.7E+02 0.0091 21.4 15.7 46 42-87 9-57 (260)
343 3snx_A SUSD homolog, putative 22.4 1.9E+02 0.0065 24.2 6.3 47 58-104 161-220 (460)
344 2g0u_A Type III secretion syst 22.2 1.5E+02 0.0053 18.6 5.5 28 90-117 31-58 (92)
345 3hdx_A SUSD homolog, SUSD supe 22.2 2.3E+02 0.0078 23.8 6.7 48 57-104 156-226 (478)
346 2qx5_A Nucleoporin NIC96; mRNA 22.1 3.7E+02 0.013 23.9 8.1 30 78-108 539-570 (661)
347 3jq1_A SUSD superfamily protei 22.1 1.4E+02 0.0047 25.2 5.3 27 42-68 181-207 (481)
348 3mv2_A Coatomer subunit alpha; 21.7 3.1E+02 0.011 21.9 12.0 102 7-108 114-240 (325)
349 3s6n_M SurviVal motor neuron p 20.9 82 0.0028 15.7 2.1 14 57-70 18-31 (37)
350 2a9u_A Ubiquitin carboxyl-term 20.8 1.9E+02 0.0064 19.9 4.9 25 44-68 45-69 (144)
No 1
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.95 E-value=3e-26 Score=177.54 Aligned_cols=171 Identities=19% Similarity=0.273 Sum_probs=150.5
Q ss_pred hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024419 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC 83 (268)
Q Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 83 (268)
|.++.+++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|+++.+++.+|.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 67788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHc-----------cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhh
Q 024419 84 ILEAM-----------EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMS 152 (268)
Q Consensus 84 ~~~~~-----------~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 152 (268)
++... |++++|+..|+++++++|+++.++..+|.++...|++++|+..... .+. +.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~--al~-----------~~ 148 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQ--ALA-----------LE 148 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH--HHH-----------HC
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHH--HHh-----------cc
Confidence 99999 9999999999999999999999999999999999999999766321 111 11
Q ss_pred hhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH
Q 024419 153 EKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK 188 (268)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 188 (268)
.........+.++...+++++|+..|++++.++|.
T Consensus 149 -~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~ 183 (217)
T 2pl2_A 149 -DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPK 183 (217)
T ss_dssp -CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred -cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 22233456666777788888999988888888876
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=2.6e-26 Score=192.53 Aligned_cols=128 Identities=18% Similarity=0.187 Sum_probs=76.5
Q ss_pred hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024419 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC 83 (268)
Q Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 83 (268)
|.++.++..+|.++...|++++|+..|++++..+|++..++.++|.++...|++++|+..|+++++.+|++..++..+|.
T Consensus 64 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 143 (388)
T 1w3b_A 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGN 143 (388)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 44555555666666666666666666666666666665566666666666666666666666666666666556666666
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHH
Q 024419 84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV 131 (268)
Q Consensus 84 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 131 (268)
++...|++++|+..|+++++.+|++..++..+|.++...|++++|...
T Consensus 144 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 191 (388)
T 1w3b_A 144 LLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHH 191 (388)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666666666666666666666666666666665555555555443
No 3
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.94 E-value=4e-26 Score=190.79 Aligned_cols=230 Identities=10% Similarity=-0.036 Sum_probs=186.4
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCC-hHHHHHHHHHHHhhCCCCHHHHHHH
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVK-LNKALADAETTISLNPQWEKGYFRK 81 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~l 81 (268)
.|.++.++..+|.++...|++++|+..|++++.++|++..+|+++|.++..+|+ +++|+.+|++++.++|+++.+|+.+
T Consensus 93 ~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~ 172 (382)
T 2h6f_A 93 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHR 172 (382)
T ss_dssp CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 688899999999999999999999999999999999999999999999999997 9999999999999999999999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhh
Q 024419 82 GCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECW 161 (268)
Q Consensus 82 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (268)
|.++..+|++++|+..|+++++++|++..+|..+|.++..+|++++|+... ...+. +.+.....+..
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~--~~al~-----------l~P~~~~a~~~ 239 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYV--DQLLK-----------EDVRNNSVWNQ 239 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHH--HHHHH-----------HCTTCHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHH--HHHHH-----------hCCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999986653 11122 22223334444
Q ss_pred HHHHHHH-HHHHHHH-----HHhhhhhhhchhH---H-------HHHhh--hhhhhHhhhhHHhcCCccccCc-cchhHH
Q 024419 162 KHVFSFV-VETMETA-----VKSWHETSKVDAK---V-------YFLLD--KEKTDTEKYAPIVNVDKAFESP-HTHGSC 222 (268)
Q Consensus 162 ~~~~~~~-~~~~~~A-----~~~~~~~~~~~~~---~-------~~~~~--~~~~a~~~~~~~~~~~~~~~~~-~~~~~~ 222 (268)
++.+... .+..++| +..|.+++.++|. + +...| +..++++.+..+ ..+|..... ...+.+
T Consensus 240 lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~ 318 (382)
T 2h6f_A 240 RYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDI 318 (382)
T ss_dssp HHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHH
T ss_pred HHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHH
Confidence 5554444 3333455 6889999999997 2 22334 578888888887 666654211 226667
Q ss_pred HHHHH---------HH--HHHHHHHH-hhhhCCCCcc
Q 024419 223 FQFLR---------QY--ADDSFSSA-ACLVAPKSII 247 (268)
Q Consensus 223 ~~~~~---------~~--a~~~~~ka-~~~~~p~~~~ 247 (268)
+..++ .+ |.+.|+++ + ++||....
T Consensus 319 ~~~~~~~~~~~~~~~~~~A~~~~~~l~~-~~DP~r~~ 354 (382)
T 2h6f_A 319 YEDMLENQCDNKEDILNKALELCEILAK-EKDTIRKE 354 (382)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHHH-TTCGGGHH
T ss_pred HHHHhcccccchHHHHHHHHHHHHHHHH-HhCchhHH
Confidence 76663 24 99999999 9 99998653
No 4
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.94 E-value=9.5e-27 Score=193.54 Aligned_cols=241 Identities=14% Similarity=0.133 Sum_probs=193.2
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024419 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI 84 (268)
Q Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 84 (268)
.++..++.+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++.++|+++.++..+|.+
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 44567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCHHHHHHHHHHHHhhCCCCHHHHHHH----------HHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhh
Q 024419 85 LEAMEQYDDALSAFQTALQYNPQSAEVSRKI----------KRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEK 154 (268)
Q Consensus 85 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l----------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (268)
+...|++++|+..|+++++++|++..++..+ +.++...|++++|..... ..+. ..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--~al~-----------~~p~ 209 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYL--EAAH-----------QNGD 209 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHH--HHHH-----------HSCS
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHH--HHHH-----------hCcC
Confidence 9999999999999999999999877666555 888888999999976632 1111 1112
Q ss_pred --cCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH----------HHHHhhhhhhhHhhhhHHhcCCccccCc-cchhH
Q 024419 155 --YGAEECWKHVFSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAFESP-HTHGS 221 (268)
Q Consensus 155 --~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~ 221 (268)
....+...+.++...+++++|+..|++++.++|. ++...|++++|+..|++++.++|..... ...|.
T Consensus 210 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 289 (365)
T 4eqf_A 210 MIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGI 289 (365)
T ss_dssp SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 2234456677788899999999999999999886 5778899999999999999998875322 22777
Q ss_pred HHHHHHHH--HHHHHHHHhhhhCCCCccc--------ccccccccccc
Q 024419 222 CFQFLRQY--ADDSFSSAACLVAPKSIIS--------YPQVYKPICLE 259 (268)
Q Consensus 222 ~~~~~~~~--a~~~~~ka~~~~~p~~~~~--------~~~~~~~~~~~ 259 (268)
++...|++ |...|++++ .++|++... ...+|...+..
T Consensus 290 ~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 336 (365)
T 4eqf_A 290 SCINLGAYREAVSNFLTAL-SLQRKSRNQQQVPHPAISGNIWAALRIA 336 (365)
T ss_dssp HHHHHTCCHHHHHHHHHHH-HHHHCC------------CHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHH-HhCcccCCCcccchhhhHHHHHHHHHHH
Confidence 88888877 999999999 999885432 34566655544
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=6.4e-26 Score=190.14 Aligned_cols=246 Identities=15% Similarity=0.149 Sum_probs=166.2
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 82 (268)
.|.++.++..+|.++...|++++|+..|+++++.+|++..++..+|.++..+|++++|+..|++++..+|+++.++..+|
T Consensus 97 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 176 (388)
T 1w3b_A 97 KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLG 176 (388)
T ss_dssp CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 36666777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhh-----HHHh--------------hh
Q 024419 83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSN-----VDMV--------------QH 143 (268)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~--------------~~ 143 (268)
.++...|++++|+..|+++++++|++..++..+|.++...+++++|......... .... ..
T Consensus 177 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 256 (388)
T 1w3b_A 177 CVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLA 256 (388)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHH
Confidence 7777777777777777777777777777777777777777666666543211000 0000 00
Q ss_pred HHHHHHH--hhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH----------HHHHhhhhhhhHhhhhHHhcCCc
Q 024419 144 LDEFKSE--MSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDK 211 (268)
Q Consensus 144 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~~ 211 (268)
+..+... ..+.....+...+......+++++|+..|++++.+.|. ++...|++++|+..+++++.+.|
T Consensus 257 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 336 (388)
T 1w3b_A 257 IDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP 336 (388)
T ss_dssp HHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCT
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 0011111 11222233445556667788888899999888888775 45677888899999999988877
Q ss_pred cccCcc-chhHHHHHHHHH--HHHHHHHHhhhhCCCCcccc
Q 024419 212 AFESPH-THGSCFQFLRQY--ADDSFSSAACLVAPKSIISY 249 (268)
Q Consensus 212 ~~~~~~-~~~~~~~~~~~~--a~~~~~ka~~~~~p~~~~~~ 249 (268)
...... ..+.++...|++ |...|++++ +++|++..++
T Consensus 337 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~-~~~p~~~~a~ 376 (388)
T 1w3b_A 337 EFAAAHSNLASVLQQQGKLQEALMHYKEAI-RISPTFADAY 376 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCCHHHHHHHHHHH-TTCTTCHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhCCCCHHHH
Confidence 642222 255666666666 899999999 8998865433
No 6
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.93 E-value=4.3e-25 Score=183.32 Aligned_cols=244 Identities=14% Similarity=0.124 Sum_probs=199.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024419 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILE 86 (268)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 86 (268)
+..++.+|..++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|++++.++|+++.++..+|.++.
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 143 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFT 143 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccCHHHHHHHHHHHHhhCCCCHHHHH----------------HHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHH
Q 024419 87 AMEQYDDALSAFQTALQYNPQSAEVSR----------------KIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSE 150 (268)
Q Consensus 87 ~~~~~~~A~~~~~~~l~~~p~~~~~~~----------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 150 (268)
..|++++|+..|++++..+|++...+. .++.++ ..|++++|..... ..+.
T Consensus 144 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~--~a~~----------- 209 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFL--AAVR----------- 209 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHH--HHHH-----------
T ss_pred HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHH--HHHH-----------
Confidence 999999999999999999999887765 456666 8888888876632 1111
Q ss_pred hhhh--cCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH----------HHHHhhhhhhhHhhhhHHhcCCccccCc-c
Q 024419 151 MSEK--YGAEECWKHVFSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAFESP-H 217 (268)
Q Consensus 151 ~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~ 217 (268)
..+. ........+.++...+++++|+..+.+++.++|. ++...|++++|+..|++++.++|..... .
T Consensus 210 ~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 289 (368)
T 1fch_A 210 LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRY 289 (368)
T ss_dssp HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 1122 2233455666777889999999999999998886 5678899999999999999998765322 2
Q ss_pred chhHHHHHHHHH--HHHHHHHHhhhhCCCCcc-------cccccccccccccchhhc
Q 024419 218 THGSCFQFLRQY--ADDSFSSAACLVAPKSII-------SYPQVYKPICLERSRITK 265 (268)
Q Consensus 218 ~~~~~~~~~~~~--a~~~~~ka~~~~~p~~~~-------~~~~~~~~~~~~~~~~~~ 265 (268)
..|.++...+++ |...|++++ .+.|++.. ....+|...|..-..+++
T Consensus 290 ~l~~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 345 (368)
T 1fch_A 290 NLGISCINLGAHREAVEHFLEAL-NMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ 345 (368)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHH-HHHHTC------CCCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH-HhCCCCCCccccccchhhHHHHHHHHHHHHhCC
Confidence 277788888888 999999999 99998722 224566666555444443
No 7
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.93 E-value=7.3e-25 Score=180.70 Aligned_cols=240 Identities=18% Similarity=0.240 Sum_probs=172.3
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024419 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCIL 85 (268)
Q Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 85 (268)
+++.++.+|..++..|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..+++++..+|+++.++..+|.++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCHHHHHHHHHHHHhhCC---CCHHHHHHH------------HHHHHHHHHHHHhHHHHhhhhh-----HHHhh---
Q 024419 86 EAMEQYDDALSAFQTALQYNP---QSAEVSRKI------------KRVSQLAKDKKRAQEVENIRSN-----VDMVQ--- 142 (268)
Q Consensus 86 ~~~~~~~~A~~~~~~~l~~~p---~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~-----~~~~~--- 142 (268)
...|++++|+..|+++++.+| +++.++..+ +.++...|++++|......... .....
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 161 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRA 161 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 999999999999999999999 899988888 5677777777777655321100 00000
Q ss_pred -----------hHHHHHHHh--hhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH---------------------
Q 024419 143 -----------HLDEFKSEM--SEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK--------------------- 188 (268)
Q Consensus 143 -----------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--------------------- 188 (268)
.+..+...+ .+.........+.++...+++++|+..+++++...|.
T Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a 241 (359)
T 3ieg_A 162 ECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESA 241 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHH
Confidence 000000001 1111222334444555566666666666666666554
Q ss_pred -HHHHhhhhhhhHhhhhHHhcCCccccCc-----cchhHHHHHHHHH--HHHHHHHHhhhhCCCCc
Q 024419 189 -VYFLLDKEKTDTEKYAPIVNVDKAFESP-----HTHGSCFQFLRQY--ADDSFSSAACLVAPKSI 246 (268)
Q Consensus 189 -~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~--a~~~~~ka~~~~~p~~~ 246 (268)
.+...|++++|+..+++++...|..... ...+.++...+++ |...|++++ .++|++.
T Consensus 242 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~-~~~~~~~ 306 (359)
T 3ieg_A 242 EELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVL-QMEPDNV 306 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH-HhCcccH
Confidence 1344566777777777777665543110 0134455555555 777777777 7777653
No 8
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.93 E-value=2.8e-24 Score=152.04 Aligned_cols=117 Identities=38% Similarity=0.643 Sum_probs=114.4
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 82 (268)
.|..++++.++|..++..|+|++|+..|+++++.+|.++.+|.++|.|+..+|++++|+..|+++++++|+++.+|+.+|
T Consensus 9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg 88 (126)
T 4gco_A 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKA 88 (126)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024419 83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVS 119 (268)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 119 (268)
.++..+|++++|+..|+++++++|+++.++..++.++
T Consensus 89 ~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 89 ACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 9999999999999999999999999999999988764
No 9
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.93 E-value=1e-24 Score=178.03 Aligned_cols=244 Identities=13% Similarity=0.083 Sum_probs=163.8
Q ss_pred hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024419 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC 83 (268)
Q Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 83 (268)
|.++..+..+|..++..|++++|+..|+++++.+|.+..++..++.++...|++++|+..+++++..+|+++.+++.+|.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 98 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGC 98 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 34556677777788888888888888888888888777777777777778888888888888888888877777888888
Q ss_pred HHHHcc-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhH-----HHh--------------hh
Q 024419 84 ILEAME-QYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNV-----DMV--------------QH 143 (268)
Q Consensus 84 ~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~--------------~~ 143 (268)
++...| ++++|+..|+++++.+|+++.++..+|.++...|++++|.......... ... ..
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLA 178 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHH
Confidence 887777 7778888888888888877777778888777777777776543211000 000 00
Q ss_pred HHHHHHHh--hhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhch---------hH----------HHHHhhhhhhhHhh
Q 024419 144 LDEFKSEM--SEKYGAEECWKHVFSFVVETMETAVKSWHETSKVD---------AK----------VYFLLDKEKTDTEK 202 (268)
Q Consensus 144 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---------~~----------~~~~~~~~~~a~~~ 202 (268)
...+...+ .+.........+.++...+++++|+..+++++.+. |. ++...|++++|+..
T Consensus 179 ~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 258 (330)
T 3hym_B 179 ERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDY 258 (330)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 00011111 11122233444555666777788888887777665 21 45667788888888
Q ss_pred hhHHhcCCccccCcc-chhHHHHHHHHH--HHHHHHHHhhhhCCCCccc
Q 024419 203 YAPIVNVDKAFESPH-THGSCFQFLRQY--ADDSFSSAACLVAPKSIIS 248 (268)
Q Consensus 203 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~--a~~~~~ka~~~~~p~~~~~ 248 (268)
+++++.++|...... ..+.++...+++ |.+.|++++ .++|++..+
T Consensus 259 ~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~~~~~ 306 (330)
T 3hym_B 259 HRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTAL-GLRRDDTFS 306 (330)
T ss_dssp HHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTT-TTCSCCHHH
T ss_pred HHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHH-ccCCCchHH
Confidence 888888766542222 266677777766 888888888 888877543
No 10
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.93 E-value=1.6e-24 Score=176.95 Aligned_cols=217 Identities=9% Similarity=0.043 Sum_probs=151.4
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH
Q 024419 30 YTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSA 109 (268)
Q Consensus 30 ~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~ 109 (268)
....+...|.++.++..+|.+++..|++++|+..|++++..+|.+..++..++.++...|++++|+..++++++.+|+++
T Consensus 11 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 90 (330)
T 3hym_B 11 IPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNP 90 (330)
T ss_dssp ---------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred hHHHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH
Confidence 44556677889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-HHHHhHHHHhhhhh-----HHHhh--------------hHHHHHH--HhhhhcCchhhhHHHHHH
Q 024419 110 EVSRKIKRVSQLAK-DKKRAQEVENIRSN-----VDMVQ--------------HLDEFKS--EMSEKYGAEECWKHVFSF 167 (268)
Q Consensus 110 ~~~~~l~~~~~~~~-~~~~a~~~~~~~~~-----~~~~~--------------~~~~~~~--~~~~~~~~~~~~~~~~~~ 167 (268)
.++..+|.++...| ++++|......... ..... .+..+.. ...+.........+..+.
T Consensus 91 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 170 (330)
T 3hym_B 91 VSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYG 170 (330)
T ss_dssp HHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 99999999999999 89988765321110 00000 0001111 111222333444555566
Q ss_pred HHHHHHHHHHhhhhhhhchhH----------HHHHhhhhhhhHhhhhHHhcCCcccc----------CccchhHHHHHHH
Q 024419 168 VVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAFE----------SPHTHGSCFQFLR 227 (268)
Q Consensus 168 ~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~ 227 (268)
..+++++|+..+++++...|. ++...|++++|...+++++.+.+... .....+.++...+
T Consensus 171 ~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 250 (330)
T 3hym_B 171 LTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK 250 (330)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc
Confidence 677777777777777777665 45567777788888877777642210 1112455556666
Q ss_pred HH--HHHHHHHHhhhhCCCCcc
Q 024419 228 QY--ADDSFSSAACLVAPKSII 247 (268)
Q Consensus 228 ~~--a~~~~~ka~~~~~p~~~~ 247 (268)
++ |...|++++ .++|++..
T Consensus 251 ~~~~A~~~~~~a~-~~~~~~~~ 271 (330)
T 3hym_B 251 KYAEALDYHRQAL-VLIPQNAS 271 (330)
T ss_dssp CHHHHHHHHHHHH-HHSTTCSH
T ss_pred CHHHHHHHHHHHH-hhCccchH
Confidence 66 888888888 88887644
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=3.1e-24 Score=182.90 Aligned_cols=130 Identities=23% Similarity=0.325 Sum_probs=119.5
Q ss_pred CchHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 024419 2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK 81 (268)
Q Consensus 2 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 81 (268)
..|.++..++.+|..++..|++++|+..|++++..+|.++.+++.+|.++...|++++|+..|+++++.+|+++.++..+
T Consensus 21 ~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 100 (450)
T 2y4t_A 21 QSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQR 100 (450)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCH---HHHHHHH------------HHHHHHHHHHHhHHH
Q 024419 82 GCILEAMEQYDDALSAFQTALQYNPQSA---EVSRKIK------------RVSQLAKDKKRAQEV 131 (268)
Q Consensus 82 a~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~l~------------~~~~~~~~~~~a~~~ 131 (268)
|.++...|++++|+..|+++++.+|++. .++..++ .++...|++++|...
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 165 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAF 165 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999999999999999998 8877764 446667777777654
No 12
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.93 E-value=1e-23 Score=158.67 Aligned_cols=171 Identities=16% Similarity=0.188 Sum_probs=153.1
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024419 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI 84 (268)
Q Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 84 (268)
.++..++.+|.++...|++++|+..|+++++.+|+++.++..+|.+|..+|++++|+..+.+++..+|+++.++..+|.+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHH
Q 024419 85 LEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHV 164 (268)
Q Consensus 85 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (268)
+...++++.|+..+.+++.++|++..++..+|.++...|++++|+.... ..+ .+.+.....+...|.
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~--~~l-----------~~~p~~~~~~~~lg~ 149 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYE--KTI-----------SIKPGFIRAYQSIGL 149 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH--HHH-----------HHCTTCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHH--HHH-----------HhcchhhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999976631 111 122333445666777
Q ss_pred HHHHHHHHHHHHHhhhhhhhchhH
Q 024419 165 FSFVVETMETAVKSWHETSKVDAK 188 (268)
Q Consensus 165 ~~~~~~~~~~A~~~~~~~~~~~~~ 188 (268)
.+..++++++|+..|+++++++|+
T Consensus 150 ~~~~~g~~~~A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 150 AYEGKGLRDEAVKYFKKALEKEEK 173 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTHH
T ss_pred HHHHCCCHHHHHHHHHHHHhCCcc
Confidence 788889999999999999998887
No 13
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.92 E-value=1.1e-24 Score=173.46 Aligned_cols=229 Identities=15% Similarity=0.116 Sum_probs=181.9
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC----HHHHHHH
Q 024419 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW----EKGYFRK 81 (268)
Q Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~l 81 (268)
+++.++..|..++..|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++. .|.+ ..++..+
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYY 80 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHH
Confidence 4568899999999999999999999999999999999999999999999999999999999999 4443 4569999
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhh
Q 024419 82 GCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECW 161 (268)
Q Consensus 82 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (268)
|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|....... +...+ .....+..
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a--l~~~~-----------~~~~~~~~ 147 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQ--IRPTT-----------TDPKVFYE 147 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGG--CCSSC-----------CCHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHH--hhcCC-----------CcHHHHHH
Confidence 999999999999999999999999999999999999999999999997764211 11111 11122333
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhchhH----------HHHHhhh---hhhhHhhhhHHhcCC---cccc------Cccch
Q 024419 162 KHVFSFVVETMETAVKSWHETSKVDAK----------VYFLLDK---EKTDTEKYAPIVNVD---KAFE------SPHTH 219 (268)
Q Consensus 162 ~~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~---~~~a~~~~~~~~~~~---~~~~------~~~~~ 219 (268)
.+...+..+++++|+..|++++.++|. ++..+++ .++|+..|++++.+. |... .....
T Consensus 148 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 227 (272)
T 3u4t_A 148 LGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYI 227 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 442233345899999999999999886 3556677 778999999999884 3210 11115
Q ss_pred hHHHHHHHHH--HHHHHHHHhhhhCCCCcccc
Q 024419 220 GSCFQFLRQY--ADDSFSSAACLVAPKSIISY 249 (268)
Q Consensus 220 ~~~~~~~~~~--a~~~~~ka~~~~~p~~~~~~ 249 (268)
|.++...+++ |.+.|++++ +++|+|..+.
T Consensus 228 ~~~~~~~~~~~~A~~~~~~al-~~~p~~~~a~ 258 (272)
T 3u4t_A 228 AYYYTINRDKVKADAAWKNIL-ALDPTNKKAI 258 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH-hcCccHHHHH
Confidence 5566666666 999999999 9999986433
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.92 E-value=1.3e-23 Score=173.12 Aligned_cols=243 Identities=12% Similarity=0.065 Sum_probs=145.1
Q ss_pred hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC---CCHHHHHH
Q 024419 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP---QWEKGYFR 80 (268)
Q Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~ 80 (268)
|.++.++..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+..|++++..+| ++..++..
T Consensus 34 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 113 (359)
T 3ieg_A 34 PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQ 113 (359)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHH
Confidence 445556666666666666666666666666666666666666666666666666666666666666665 55544444
Q ss_pred H------------HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhh-----hHHHhhh
Q 024419 81 K------------GCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRS-----NVDMVQH 143 (268)
Q Consensus 81 l------------a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~ 143 (268)
+ |.++...|++++|+..++++++.+|+++.++..++.++...|++++|........ .......
T Consensus 114 l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 193 (359)
T 3ieg_A 114 LVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYK 193 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 4 4555555555555555555555555555555555555555555555543321100 0000000
Q ss_pred H--------------HHHHHHhhhhcCch--------------hhhHHHHHHHHHHHHHHHHhhhhhhhchhH-------
Q 024419 144 L--------------DEFKSEMSEKYGAE--------------ECWKHVFSFVVETMETAVKSWHETSKVDAK------- 188 (268)
Q Consensus 144 ~--------------~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------- 188 (268)
+ ..+...+....... ....+......+++++|+..+.+++...|.
T Consensus 194 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 273 (359)
T 3ieg_A 194 ISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVR 273 (359)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHH
Confidence 0 00000000000000 112244566788999999999998887765
Q ss_pred -------HHHHhhhhhhhHhhhhHHhcCCccccCc-cchhHHHHHHHHH--HHHHHHHHhhhhCCCCcc
Q 024419 189 -------VYFLLDKEKTDTEKYAPIVNVDKAFESP-HTHGSCFQFLRQY--ADDSFSSAACLVAPKSII 247 (268)
Q Consensus 189 -------~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--a~~~~~ka~~~~~p~~~~ 247 (268)
++...|++++|+..++.++.++|..... ...|.++...|++ |...|++++ +++|++..
T Consensus 274 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~-~~~p~~~~ 341 (359)
T 3ieg_A 274 SKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQ-EHNENDQQ 341 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TTCTTCHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hcCCCChH
Confidence 4667899999999999999998765322 2277788888888 999999999 99999854
No 15
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.92 E-value=8.1e-24 Score=166.77 Aligned_cols=221 Identities=15% Similarity=0.188 Sum_probs=182.9
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-------H
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW-------E 75 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-------~ 75 (268)
.+..++.+..+|..++..|++++|+..|+++++.+ .++.++..+|.++..+|++++|+..+++++.++|++ +
T Consensus 1 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 79 (258)
T 3uq3_A 1 GGSMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVIS 79 (258)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHH
Confidence 36789999999999999999999999999999999 999999999999999999999999999999999877 7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhc
Q 024419 76 KGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKY 155 (268)
Q Consensus 76 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (268)
.++..+|.++...|++++|+..|+++++++|+ +.++...+++++|..... ..+.. .+..
T Consensus 80 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~--~~~~~-----------~~~~ 138 (258)
T 3uq3_A 80 KSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAE--AEAYV-----------NPEK 138 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHH--HHHHC-----------CHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHH--HHHHc-----------Ccch
Confidence 99999999999999999999999999999997 344555666666654421 11111 1112
Q ss_pred CchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH----------HHHHhhhhhhhHhhhhHHhcCCccccCcc-chhHHHH
Q 024419 156 GAEECWKHVFSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAFESPH-THGSCFQ 224 (268)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~ 224 (268)
...+...+......+++++|+..+++++..+|. ++...|++++|+..++.++.++|...... ..+.++.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 218 (258)
T 3uq3_A 139 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 218 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 234455666777789999999999999988886 57788999999999999999988653222 2677777
Q ss_pred HHHHH--HHHHHHHHhhhhC------CCCc
Q 024419 225 FLRQY--ADDSFSSAACLVA------PKSI 246 (268)
Q Consensus 225 ~~~~~--a~~~~~ka~~~~~------p~~~ 246 (268)
..+++ |...|++++ +++ |++.
T Consensus 219 ~~g~~~~A~~~~~~a~-~~~~~~~~~p~~~ 247 (258)
T 3uq3_A 219 AVKEYASALETLDAAR-TKDAEVNNGSSAR 247 (258)
T ss_dssp HTTCHHHHHHHHHHHH-HHHHHHHTTTTHH
T ss_pred HHhhHHHHHHHHHHHH-HhChhhcCCCchH
Confidence 77877 999999999 999 7664
No 16
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.92 E-value=5.1e-23 Score=158.24 Aligned_cols=171 Identities=12% Similarity=0.059 Sum_probs=141.3
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHH----------------HHHHHHHcCChHHHHHHHHHHHh
Q 024419 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSN----------------RAAAFLHLVKLNKALADAETTIS 69 (268)
Q Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~----------------~a~~~~~~~~~~~A~~~~~~al~ 69 (268)
+++.++.+|..++..|++++|+..|+++++.+|+++.+++. +|.++..+|++++|+..|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 57789999999999999999999999999999999999999 99999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHH
Q 024419 70 LNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKS 149 (268)
Q Consensus 70 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 149 (268)
++|+++.+++.+|.++...|++++|+..|+++++++|+++.++..+|.++...+..+.+.............+
T Consensus 83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~------- 155 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK------- 155 (208)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH-------
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc-------
Confidence 9999999999999999999999999999999999999999999999999877765443322211111111000
Q ss_pred HhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH
Q 024419 150 EMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK 188 (268)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 188 (268)
........|......+++++|+..|++++.++|.
T Consensus 156 -----~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 156 -----MQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp -----HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred -----hhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 0012234555666678888888888888888886
No 17
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.92 E-value=6.6e-24 Score=190.19 Aligned_cols=174 Identities=20% Similarity=0.244 Sum_probs=154.6
Q ss_pred CchHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 024419 2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK 81 (268)
Q Consensus 2 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 81 (268)
+.|.+++++.++|.++..+|++++|+..|+++++++|++..++.++|.+|..+|++++|+..|+++++++|+++.+|+++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL 83 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 83 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhh
Q 024419 82 GCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECW 161 (268)
Q Consensus 82 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (268)
|.++..+|++++|++.|+++++++|++..++..+|.++..+|++++|+.... +.+ .+.+.....+..
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~--~Al-----------~l~P~~~~a~~~ 150 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYR--TAL-----------KLKPDFPDAYCN 150 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH--HHH-----------HHCSCCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH--HHH-----------HhCCCChHHHhh
Confidence 9999999999999999999999999999999999999999999999976631 111 223334445566
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhchhH
Q 024419 162 KHVFSFVVETMETAVKSWHETSKVDAK 188 (268)
Q Consensus 162 ~~~~~~~~~~~~~A~~~~~~~~~~~~~ 188 (268)
.+..+..++++++|.+.+++++.+.|+
T Consensus 151 L~~~l~~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 151 LAHCLQIVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp HHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred hhhHHHhcccHHHHHHHHHHHHHhChh
Confidence 667777788888888888888887776
No 18
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.91 E-value=4.2e-23 Score=160.62 Aligned_cols=130 Identities=19% Similarity=0.208 Sum_probs=123.2
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDP-SNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK 81 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 81 (268)
++.++..++.+|..++..|++++|+..|+++++.+| .+..+++++|.|+..+|++++|+..|++++..+|+++.++..+
T Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 82 (228)
T 4i17_A 3 QTTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGK 82 (228)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 456679999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCH-------HHHHHHHHHHHHHHHHHHhHHHH
Q 024419 82 GCILEAMEQYDDALSAFQTALQYNPQSA-------EVSRKIKRVSQLAKDKKRAQEVE 132 (268)
Q Consensus 82 a~~~~~~~~~~~A~~~~~~~l~~~p~~~-------~~~~~l~~~~~~~~~~~~a~~~~ 132 (268)
|.++..+|++++|+..|+++++++|+++ .++..+|.++...|++++|+...
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~ 140 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENY 140 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHH
Confidence 9999999999999999999999999999 66999999999999999997764
No 19
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.91 E-value=6.3e-24 Score=173.16 Aligned_cols=227 Identities=10% Similarity=0.104 Sum_probs=187.3
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024419 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI 84 (268)
Q Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 84 (268)
.++..++.+|..++..|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++..+|+++.++..+|.+
T Consensus 19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 98 (327)
T 3cv0_A 19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 98 (327)
T ss_dssp GGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCHHHHHHHHHHHHhhCCCCHHHHHHH--------------HH-HHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHH
Q 024419 85 LEAMEQYDDALSAFQTALQYNPQSAEVSRKI--------------KR-VSQLAKDKKRAQEVENIRSNVDMVQHLDEFKS 149 (268)
Q Consensus 85 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 149 (268)
+...|++++|+..++++++.+|.+...+..+ +. ++...|++++|..... ..+.
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~--~~~~---------- 166 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLH--AALE---------- 166 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHH--HHHH----------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHH--HHHh----------
Confidence 9999999999999999999999998888777 65 5777888888866531 1111
Q ss_pred HhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH----------HHHHhhhhhhhHhhhhHHhcCCccccC-ccc
Q 024419 150 EMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAFES-PHT 218 (268)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~ 218 (268)
..+.........+..+...+++++|+..+.+++..+|. ++...|++++|+..+++++...|.... ...
T Consensus 167 -~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 245 (327)
T 3cv0_A 167 -MNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYN 245 (327)
T ss_dssp -HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred -hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 11222334455566677789999999999999988875 566889999999999999999876422 222
Q ss_pred hhHHHHHHHHH--HHHHHHHHhhhhCCCC
Q 024419 219 HGSCFQFLRQY--ADDSFSSAACLVAPKS 245 (268)
Q Consensus 219 ~~~~~~~~~~~--a~~~~~ka~~~~~p~~ 245 (268)
.+.++...+++ |.+.|++++ .++|++
T Consensus 246 l~~~~~~~g~~~~A~~~~~~a~-~~~~~~ 273 (327)
T 3cv0_A 246 MAVSYSNMSQYDLAAKQLVRAI-YMQVGG 273 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH-HHHTTS
T ss_pred HHHHHHHhccHHHHHHHHHHHH-HhCCcc
Confidence 67777777777 999999999 999983
No 20
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=4.3e-23 Score=175.81 Aligned_cols=243 Identities=12% Similarity=0.073 Sum_probs=177.0
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH---HHHH
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWE---KGYF 79 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~ 79 (268)
.|.++.++..+|.++...|++++|+..|+++++.+|++..++..+|.+|..+|++++|+..|++++..+|++. .++.
T Consensus 56 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 135 (450)
T 2y4t_A 56 DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQS 135 (450)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHH
Confidence 4677889999999999999999999999999999999999999999999999999999999999999999988 7766
Q ss_pred HH------------HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhh-----HHHhh
Q 024419 80 RK------------GCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSN-----VDMVQ 142 (268)
Q Consensus 80 ~l------------a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~ 142 (268)
.+ |.++...|++++|+..|+++++.+|.++.++..++.++...|++++|......... .....
T Consensus 136 ~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 215 (450)
T 2y4t_A 136 QLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFY 215 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 55 66699999999999999999999999999999999999999999888765321110 00000
Q ss_pred h--------------HHHHHHHhhhhcCch--hhhH------------HHHHHHHHHHHHHHHhhhhhhhchhH------
Q 024419 143 H--------------LDEFKSEMSEKYGAE--ECWK------------HVFSFVVETMETAVKSWHETSKVDAK------ 188 (268)
Q Consensus 143 ~--------------~~~~~~~~~~~~~~~--~~~~------------~~~~~~~~~~~~A~~~~~~~~~~~~~------ 188 (268)
. +..+...+....... .... +......+++++|+..|.+++.+.|.
T Consensus 216 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 295 (450)
T 2y4t_A 216 KISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTV 295 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHH
Confidence 0 001111111111111 1111 34455567777777777777766654
Q ss_pred --------HHHHhhhhhhhHhhhhHHhcCCccccCc-cchhHHHHHHHHH--HHHHHHHHhhhhCCCCc
Q 024419 189 --------VYFLLDKEKTDTEKYAPIVNVDKAFESP-HTHGSCFQFLRQY--ADDSFSSAACLVAPKSI 246 (268)
Q Consensus 189 --------~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--a~~~~~ka~~~~~p~~~ 246 (268)
++...|++++|+..+++++.++|..... ...+.++...+++ |...|++++ +++|++.
T Consensus 296 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al-~~~p~~~ 363 (450)
T 2y4t_A 296 RSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQ-EHNENDQ 363 (450)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TTSSSCH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HhCcchH
Confidence 3445677777888887777776654211 2256666666666 888888888 7888764
No 21
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=2.3e-22 Score=174.95 Aligned_cols=227 Identities=15% Similarity=0.167 Sum_probs=194.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024419 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILE 86 (268)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 86 (268)
+.++..+|..+...|++++|+..|++++..+|+ ..++..+|.++...|++++|+..+++++..+|+++.++..+|.++.
T Consensus 243 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 321 (537)
T 3fp2_A 243 ALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYF 321 (537)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 557889999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHH
Q 024419 87 AMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFS 166 (268)
Q Consensus 87 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (268)
..|++++|+..|+++++.+|+++.++..++.++...|++++|..... ..+ ...+.....+...+.+.
T Consensus 322 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~--~~~-----------~~~~~~~~~~~~l~~~~ 388 (537)
T 3fp2_A 322 ILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFN--ETK-----------LKFPTLPEVPTFFAEIL 388 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHH--HHH-----------HHCTTCTHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH--HHH-----------HhCCCChHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999977632 111 12233344556667778
Q ss_pred HHHHHHHHHHHhhhhhhhchhH----------------HHHHh----------hhhhhhHhhhhHHhcCCccccCcc-ch
Q 024419 167 FVVETMETAVKSWHETSKVDAK----------------VYFLL----------DKEKTDTEKYAPIVNVDKAFESPH-TH 219 (268)
Q Consensus 167 ~~~~~~~~A~~~~~~~~~~~~~----------------~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~-~~ 219 (268)
...+++++|+..|.+++.+.|. ++... |++++|+..+++++.++|...... ..
T Consensus 389 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l 468 (537)
T 3fp2_A 389 TDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGL 468 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 8889999999999999998886 24445 999999999999999988653222 26
Q ss_pred hHHHHHHHHH--HHHHHHHHhhhhCCCCccc
Q 024419 220 GSCFQFLRQY--ADDSFSSAACLVAPKSIIS 248 (268)
Q Consensus 220 ~~~~~~~~~~--a~~~~~ka~~~~~p~~~~~ 248 (268)
+.++...|++ |.+.|++++ .++|++...
T Consensus 469 ~~~~~~~g~~~~A~~~~~~al-~~~~~~~~~ 498 (537)
T 3fp2_A 469 AQLKLQMEKIDEAIELFEDSA-ILARTMDEK 498 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH-HHC--CHHH
T ss_pred HHHHHHhccHHHHHHHHHHHH-HhCCCcHHH
Confidence 7777888877 999999999 999987554
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.90 E-value=8.4e-23 Score=169.68 Aligned_cols=198 Identities=11% Similarity=0.065 Sum_probs=166.8
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH-
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK- 81 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l- 81 (268)
.|.++.++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++++.++|++..++..+
T Consensus 95 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 174 (365)
T 4eqf_A 95 DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKK 174 (365)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-----
T ss_pred CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhc
Confidence 4778899999999999999999999999999999999999999999999999999999999999999999876666555
Q ss_pred ---------HHHHHHccCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHH
Q 024419 82 ---------GCILEAMEQYDDALSAFQTALQYNPQ--SAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSE 150 (268)
Q Consensus 82 ---------a~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 150 (268)
|.++...|++++|+..|+++++++|+ ++.++..+|.++...|++++|..... ..+.
T Consensus 175 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--~al~----------- 241 (365)
T 4eqf_A 175 GSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFN--AALT----------- 241 (365)
T ss_dssp --------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHH--HHHH-----------
T ss_pred cchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHH--HHHH-----------
Confidence 99999999999999999999999999 89999999999999999999977632 1111
Q ss_pred hhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH----------HHHHhhhhhhhHhhhhHHhcCCccc
Q 024419 151 MSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAF 213 (268)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~~~~ 213 (268)
..+.....+...+..+...+++++|+..|++++.++|. ++..+|++.+|+..|++++.+.|..
T Consensus 242 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 314 (365)
T 4eqf_A 242 VRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKS 314 (365)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 12223334566677788889999999999999999886 5778899999999999999997764
No 23
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.90 E-value=2.4e-22 Score=155.50 Aligned_cols=166 Identities=13% Similarity=0.089 Sum_probs=134.7
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc-----------CChHHHHHHHHHHHhhC
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHL-----------VKLNKALADAETTISLN 71 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~-----------~~~~~A~~~~~~al~~~ 71 (268)
.|.++.++..+|.++...|++++|+..|+++++.+|+++.++.++|.++..+ |++++|+..|+++++++
T Consensus 35 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 114 (217)
T 2pl2_A 35 NPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN 114 (217)
T ss_dssp SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC
Confidence 5888999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHh
Q 024419 72 PQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEM 151 (268)
Q Consensus 72 p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 151 (268)
|+++.++..+|.++...|++++|+..|+++++++ +++.++..+|.++...|++++|..... ..+. +
T Consensus 115 P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~--~al~-----------~ 180 (217)
T 2pl2_A 115 PRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYA--KALE-----------Q 180 (217)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHH--HHHH-----------H
T ss_pred cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHH--HHHH-----------h
Confidence 9999999999999999999999999999999999 999999999999999999999976531 1111 2
Q ss_pred hhhcCchhhhHHHHHHHHHHHHHHHHhhhhh
Q 024419 152 SEKYGAEECWKHVFSFVVETMETAVKSWHET 182 (268)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 182 (268)
.+.........+.+....+++++|+..++++
T Consensus 181 ~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 181 APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp STTCHHHHHHHHHHHTC--------------
T ss_pred CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 2233334455556666678888888877765
No 24
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.90 E-value=8.3e-23 Score=170.74 Aligned_cols=199 Identities=10% Similarity=0.044 Sum_probs=158.0
Q ss_pred chHhHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 024419 3 AEAEEMSLKDKGNEFFKAGN-YLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK 81 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 81 (268)
.|.++.+++.+|.++...|+ +++|+..|++++.++|++..+|+++|.++..+|++++|+.+|++++.++|++..+|+.+
T Consensus 127 ~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~l 206 (382)
T 2h6f_A 127 NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHR 206 (382)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHH
Confidence 58899999999999999997 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-HHHHHHhHH---HHhhhhhHHHhhhHHHHHHHhhhhcCc
Q 024419 82 GCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL-AKDKKRAQE---VENIRSNVDMVQHLDEFKSEMSEKYGA 157 (268)
Q Consensus 82 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~-~~~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (268)
|.++..+|++++|+.+|+++++++|++..+|..+|.++.. .+..++|.. +..+...+...+ ....
T Consensus 207 g~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P-----------~~~~ 275 (382)
T 2h6f_A 207 QWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVP-----------HNES 275 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHST-----------TCHH
T ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCC-----------CCHH
Confidence 9999999999999999999999999999999999999988 444355531 111122222222 2222
Q ss_pred hhhhHHHHHHHHH--HHHHHHHhhhhhhhchhH----------HHHHhh--------h-hhhhHhhhhHH-hcCCccc
Q 024419 158 EECWKHVFSFVVE--TMETAVKSWHETSKVDAK----------VYFLLD--------K-EKTDTEKYAPI-VNVDKAF 213 (268)
Q Consensus 158 ~~~~~~~~~~~~~--~~~~A~~~~~~~~~~~~~----------~~~~~~--------~-~~~a~~~~~~~-~~~~~~~ 213 (268)
.+..++.+....+ ++++|+..+.+. +.+|. +|..+| + .++|+..|+++ +.++|..
T Consensus 276 a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r 352 (382)
T 2h6f_A 276 AWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIR 352 (382)
T ss_dssp HHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchh
Confidence 3333333333333 567777777766 56654 344443 2 48899999999 8998854
No 25
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.89 E-value=5.3e-21 Score=152.21 Aligned_cols=210 Identities=15% Similarity=0.117 Sum_probs=151.2
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 82 (268)
.|.++.++..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|++++.++|.++.++..+|
T Consensus 39 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la 118 (275)
T 1xnf_A 39 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG 118 (275)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHH
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhH
Q 024419 83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWK 162 (268)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (268)
.++...|++++|+..|+++++++|++......++.. ...|++++|..... ..+...+ .. ......
T Consensus 119 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~--~~~~~~~-----------~~-~~~~~~ 183 (275)
T 1xnf_A 119 IALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLK--QHFEKSD-----------KE-QWGWNI 183 (275)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHH--HHHHHSC-----------CC-STHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHH--HHHhcCC-----------cc-hHHHHH
Confidence 999999999999999999999999988766655544 45577777765531 0111000 00 011112
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhchhH--------------HHHHhhhhhhhHhhhhHHhcCCccccCccchhHHHHHHHH
Q 024419 163 HVFSFVVETMETAVKSWHETSKVDAK--------------VYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQ 228 (268)
Q Consensus 163 ~~~~~~~~~~~~A~~~~~~~~~~~~~--------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (268)
.......+..++|+..+.+++...|. ++...|++++|...|++++.++|.. ....+.++..+++
T Consensus 184 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~~l~~ 261 (275)
T 1xnf_A 184 VEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN--FVEHRYALLELSL 261 (275)
T ss_dssp HHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT--CHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh--HHHHHHHHHHHHH
Confidence 22222334445666677666665552 4556677777777777777777643 1223444454444
Q ss_pred H
Q 024419 229 Y 229 (268)
Q Consensus 229 ~ 229 (268)
+
T Consensus 262 ~ 262 (275)
T 1xnf_A 262 L 262 (275)
T ss_dssp H
T ss_pred H
Confidence 4
No 26
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.89 E-value=1.1e-22 Score=177.06 Aligned_cols=103 Identities=28% Similarity=0.513 Sum_probs=92.2
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024419 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI 84 (268)
Q Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 84 (268)
..+..++.+|..++..|++++|+..|++++..+|+++.++..+|.|+..+|++++|+..|++++.++|+++.+++.+|.+
T Consensus 23 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 102 (537)
T 3fp2_A 23 AYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCHHHHHHHHHHHHhhCCCC
Q 024419 85 LEAMEQYDDALSAFQTALQYNPQS 108 (268)
Q Consensus 85 ~~~~~~~~~A~~~~~~~l~~~p~~ 108 (268)
+...|++++|+..|+ ++..+|+.
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~~~~~ 125 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSLNGDF 125 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC-----
T ss_pred HHHcCCHHHHHHHHH-HHhcCCCC
Confidence 999999999988774 66555543
No 27
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.89 E-value=3.9e-22 Score=175.82 Aligned_cols=245 Identities=13% Similarity=0.110 Sum_probs=165.3
Q ss_pred hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024419 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC 83 (268)
Q Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 83 (268)
|.++..+..+|..+...|++++|+..|+++++.+|.+..++..++.++...|++++|+..+++++..+|+++.++..+|.
T Consensus 302 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 381 (597)
T 2xpi_A 302 EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGI 381 (597)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHH
Confidence 56788889999999999999999999999998888888888888888888888888888888888888888888888888
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhH-----HHhh--------------hH
Q 024419 84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNV-----DMVQ--------------HL 144 (268)
Q Consensus 84 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~--------------~~ 144 (268)
+|...|++++|+..|+++++++|++..+|..++.++...|++++|.+........ .... ..
T Consensus 382 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 461 (597)
T 2xpi_A 382 YYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLAN 461 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHH
Confidence 8888888888888888888888888888888888888888888776653211000 0000 00
Q ss_pred HHHHHH--hhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhch------hH-----------HHHHhhhhhhhHhhhhH
Q 024419 145 DEFKSE--MSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVD------AK-----------VYFLLDKEKTDTEKYAP 205 (268)
Q Consensus 145 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------~~-----------~~~~~~~~~~a~~~~~~ 205 (268)
..+... ..+.....+...+..+...+++++|+..|++++... |. ++...|++++|...+++
T Consensus 462 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 541 (597)
T 2xpi_A 462 EYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQ 541 (597)
T ss_dssp HHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 000000 011111223333444555667777777777776652 21 35566777777777777
Q ss_pred HhcCCccccC-ccchhHHHHHHHHH--HHHHHHHHhhhhCCCCcccc
Q 024419 206 IVNVDKAFES-PHTHGSCFQFLRQY--ADDSFSSAACLVAPKSIISY 249 (268)
Q Consensus 206 ~~~~~~~~~~-~~~~~~~~~~~~~~--a~~~~~ka~~~~~p~~~~~~ 249 (268)
++.++|.... ....+.++...|++ |.+.|++++ +++|++..++
T Consensus 542 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l-~~~p~~~~~~ 587 (597)
T 2xpi_A 542 GLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESL-AISPNEIMAS 587 (597)
T ss_dssp HHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHH
T ss_pred HHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH-hcCCCChHHH
Confidence 7777664321 12255566666666 777777777 7777765433
No 28
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.5e-22 Score=175.06 Aligned_cols=231 Identities=13% Similarity=0.064 Sum_probs=199.9
Q ss_pred hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024419 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC 83 (268)
Q Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 83 (268)
|.++.++..+|..+...|++++|+..|+++++.+|. ..++..+|.++...|++++|+..+++++..+|.++.++..+|.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 312 (514)
T 2gw1_A 234 EKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQ 312 (514)
T ss_dssp HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHH
Confidence 778899999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHH
Q 024419 84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKH 163 (268)
Q Consensus 84 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (268)
++...|++++|+..|+++++.+|+++.++..++.++...|++++|...... .+ ...+.........+
T Consensus 313 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~--~~-----------~~~~~~~~~~~~la 379 (514)
T 2gw1_A 313 MNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSE--AK-----------RKFPEAPEVPNFFA 379 (514)
T ss_dssp HHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHH--HH-----------HHSTTCSHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHH--HH-----------HHcccCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999766321 11 12233444556667
Q ss_pred HHHHHHHHHHHHHHhhhhhhhchhH----------------HHHH---hhhhhhhHhhhhHHhcCCccccCc-cchhHHH
Q 024419 164 VFSFVVETMETAVKSWHETSKVDAK----------------VYFL---LDKEKTDTEKYAPIVNVDKAFESP-HTHGSCF 223 (268)
Q Consensus 164 ~~~~~~~~~~~A~~~~~~~~~~~~~----------------~~~~---~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~ 223 (268)
..+...+++++|+..+.+++.+.|. ++.. .|++++|+..+++++.++|..... ...+.++
T Consensus 380 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 459 (514)
T 2gw1_A 380 EILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMK 459 (514)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 7788889999999999999887775 3456 899999999999999998765322 2267777
Q ss_pred HHHHHH--HHHHHHHHhhhhCCCCcccc
Q 024419 224 QFLRQY--ADDSFSSAACLVAPKSIISY 249 (268)
Q Consensus 224 ~~~~~~--a~~~~~ka~~~~~p~~~~~~ 249 (268)
...|++ |...|++++ .++|++...+
T Consensus 460 ~~~g~~~~A~~~~~~a~-~~~~~~~~~~ 486 (514)
T 2gw1_A 460 LQQEDIDEAITLFEESA-DLARTMEEKL 486 (514)
T ss_dssp HHTTCHHHHHHHHHHHH-HHCSSHHHHH
T ss_pred HHhcCHHHHHHHHHHHH-HhccccHHHH
Confidence 777877 999999999 9999975543
No 29
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.89 E-value=8.9e-22 Score=173.56 Aligned_cols=239 Identities=10% Similarity=0.021 Sum_probs=182.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 024419 9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAM 88 (268)
Q Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 88 (268)
.+..++..+...|++++|+..|+++++. |.+..++..+|.++...|++++|+..|++++..+|++..++..++.++...
T Consensus 274 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 352 (597)
T 2xpi_A 274 LYMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHES 352 (597)
T ss_dssp HHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHh
Confidence 3444577888899999999999999988 789999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhh-----hHHHhhh--------------HHHHHH
Q 024419 89 EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRS-----NVDMVQH--------------LDEFKS 149 (268)
Q Consensus 89 ~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~--------------~~~~~~ 149 (268)
|++++|+..+++++..+|++..++..++.++...|++++|........ ....... +..+..
T Consensus 353 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 432 (597)
T 2xpi_A 353 GEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTT 432 (597)
T ss_dssp TCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999987643211 1111000 011111
Q ss_pred --HhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH----------HHHHhhhhhhhHhhhhHHhcCC------c
Q 024419 150 --EMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVD------K 211 (268)
Q Consensus 150 --~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~------~ 211 (268)
...+.....+...+..+...+++++|+..|++++...|. ++...|+.++|++.+++++.+. |
T Consensus 433 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p 512 (597)
T 2xpi_A 433 AARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNE 512 (597)
T ss_dssp HHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCS
T ss_pred HHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccch
Confidence 111122333444555666688888888888888877664 4667788889999998888873 3
Q ss_pred cc--cCccchhHHHHHHHHH--HHHHHHHHhhhhCCCCcccc
Q 024419 212 AF--ESPHTHGSCFQFLRQY--ADDSFSSAACLVAPKSIISY 249 (268)
Q Consensus 212 ~~--~~~~~~~~~~~~~~~~--a~~~~~ka~~~~~p~~~~~~ 249 (268)
.. ......+.++...|++ |.+.|++++ +++|++...+
T Consensus 513 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~ 553 (597)
T 2xpi_A 513 KPWAATWANLGHAYRKLKMYDAAIDALNQGL-LLSTNDANVH 553 (597)
T ss_dssp GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHSSCCHHHH
T ss_pred hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HhCCCChHHH
Confidence 21 1112255566666666 999999999 8888875433
No 30
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=6.7e-22 Score=170.89 Aligned_cols=238 Identities=18% Similarity=0.280 Sum_probs=173.9
Q ss_pred hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024419 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC 83 (268)
Q Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 83 (268)
...+++++.+|..++..|+|++|+..|++++..+| ++.++..+|.|+...|++++|+..++++++.+|+++.+++.+|.
T Consensus 3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 81 (514)
T 2gw1_A 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence 35788999999999999999999999999999999 69999999999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCC-------------------------------------------------------
Q 024419 84 ILEAMEQYDDALSAFQTALQYNPQS------------------------------------------------------- 108 (268)
Q Consensus 84 ~~~~~~~~~~A~~~~~~~l~~~p~~------------------------------------------------------- 108 (268)
++...|++++|+..|++++..+|.+
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 9999999999999999999998754
Q ss_pred ------------------------HHHHHHHHHHHHH---HHHHHHhHHHHhhhhh-----HHHhhhHHHHHHHhhhhcC
Q 024419 109 ------------------------AEVSRKIKRVSQL---AKDKKRAQEVENIRSN-----VDMVQHLDEFKSEMSEKYG 156 (268)
Q Consensus 109 ------------------------~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 156 (268)
..++..++.+... .|++++|......... +...+... .......
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 237 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDE----KLKEKLA 237 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCH----HHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCcccc----ccChHHH
Confidence 3444444444443 5666666554211110 00000000 0001222
Q ss_pred chhhhHHHHHHHHHHHHHHHHhhhhhhhchhH---------HHHHhhhhhhhHhhhhHHhcCCccccCcc-chhHHHHHH
Q 024419 157 AEECWKHVFSFVVETMETAVKSWHETSKVDAK---------VYFLLDKEKTDTEKYAPIVNVDKAFESPH-THGSCFQFL 226 (268)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 226 (268)
..+...+......+++++|+..+++++...|. ++...|++.+|+..+++++..+|...... ..+.++...
T Consensus 238 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 317 (514)
T 2gw1_A 238 ISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFIL 317 (514)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHh
Confidence 33444555666677888888888887776663 45566788888888888888766542222 155555555
Q ss_pred HHH--HHHHHHHHhhhhCCCCcc
Q 024419 227 RQY--ADDSFSSAACLVAPKSII 247 (268)
Q Consensus 227 ~~~--a~~~~~ka~~~~~p~~~~ 247 (268)
+++ |...|++++ .++|++..
T Consensus 318 ~~~~~A~~~~~~~~-~~~~~~~~ 339 (514)
T 2gw1_A 318 QNYDQAGKDFDKAK-ELDPENIF 339 (514)
T ss_dssp TCTTHHHHHHHHHH-HTCSSCSH
T ss_pred CCHHHHHHHHHHHH-HhChhhHH
Confidence 656 888888888 88877644
No 31
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.89 E-value=5.9e-22 Score=170.61 Aligned_cols=172 Identities=12% Similarity=0.114 Sum_probs=149.5
Q ss_pred chHhHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 024419 3 AEAEEMSLKDKGNEFFKAGNY-LKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK 81 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 81 (268)
.|.++..++.+|.++...|++ ++|+..|+++++.+|+++.+|..+|.+|..+|++++|+.+|+++++++|+ ..++..+
T Consensus 98 ~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~l 176 (474)
T 4abn_A 98 AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNL 176 (474)
T ss_dssp CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHH
T ss_pred CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHH
Confidence 456788999999999999999 99999999999999999999999999999999999999999999999999 7999999
Q ss_pred HHHHHHc---------cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH--------HHHHHhHHHHhhhhhHHHhhhH
Q 024419 82 GCILEAM---------EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA--------KDKKRAQEVENIRSNVDMVQHL 144 (268)
Q Consensus 82 a~~~~~~---------~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~ 144 (268)
|.++... |++++|+..|+++++++|+++.+|..+|.++... +++++|..... ..+.
T Consensus 177 g~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~--~al~----- 249 (474)
T 4abn_A 177 SMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYA--QAEK----- 249 (474)
T ss_dssp HHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH--HHHH-----
T ss_pred HHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHH--HHHH-----
Confidence 9999999 9999999999999999999999999999999998 88888866531 1111
Q ss_pred HHHHHHhhh---hcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH
Q 024419 145 DEFKSEMSE---KYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK 188 (268)
Q Consensus 145 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 188 (268)
+.+ .....+...+.++...+++++|+..|++++.++|.
T Consensus 250 ------~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 290 (474)
T 4abn_A 250 ------VDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA 290 (474)
T ss_dssp ------HCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred ------hCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 122 33444566667777788888888888888888876
No 32
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.89 E-value=2.2e-22 Score=166.93 Aligned_cols=222 Identities=12% Similarity=0.079 Sum_probs=182.6
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH---
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYF--- 79 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~--- 79 (268)
.|.++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+|++..++.
T Consensus 94 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 173 (368)
T 1fch_A 94 DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAE 173 (368)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---
T ss_pred CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 47788999999999999999999999999999999999999999999999999999999999999999999877765
Q ss_pred -------------HHHHHHHHccCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhH
Q 024419 80 -------------RKGCILEAMEQYDDALSAFQTALQYNPQ--SAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHL 144 (268)
Q Consensus 80 -------------~la~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 144 (268)
.+|.++ ..|++++|+..|+++++.+|+ ++.++..+|.++...|++++|..... ..+.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--~al~----- 245 (368)
T 1fch_A 174 EGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFT--AALS----- 245 (368)
T ss_dssp ------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHH--HHHH-----
T ss_pred HHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHH--HHHH-----
Confidence 567776 999999999999999999999 89999999999999999999977632 1111
Q ss_pred HHHHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH----------HHHHhhhhhhhHhhhhHHhcCCcccc
Q 024419 145 DEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAFE 214 (268)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~~~~~ 214 (268)
+.+.....+...+.++...+++++|+..|++++.++|. ++...|++++|...+++++.+.|...
T Consensus 246 ------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 319 (368)
T 1fch_A 246 ------VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSR 319 (368)
T ss_dssp ------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-
T ss_pred ------hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCC
Confidence 12222334566677788889999999999999998886 57788999999999999999877541
Q ss_pred ------------CccchhHHHHHHHHH--HHHHHHHHh
Q 024419 215 ------------SPHTHGSCFQFLRQY--ADDSFSSAA 238 (268)
Q Consensus 215 ------------~~~~~~~~~~~~~~~--a~~~~~ka~ 238 (268)
.....+.++..+|++ |...+.+++
T Consensus 320 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 320 GPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp -----CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred CccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 111144555555544 555555555
No 33
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.89 E-value=4.7e-21 Score=147.75 Aligned_cols=172 Identities=15% Similarity=0.107 Sum_probs=142.7
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 82 (268)
.|.++..+..+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|+..+++++..+|.+..++..+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 83 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYG 83 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHc-cCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchh
Q 024419 83 CILEAM-EQYDDALSAFQTALQ--YNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEE 159 (268)
Q Consensus 83 ~~~~~~-~~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (268)
.++... |++++|+..++++++ .+|.+..++..+|.++...|++++|..... ..+. ..+......
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~--~~~~-----------~~~~~~~~~ 150 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLK--RSLA-----------AQPQFPPAF 150 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHH--HHHH-----------HSTTCHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHH--HHHH-----------hCCCCchHH
Confidence 999999 999999999999999 677778999999999999999999976632 1111 111112223
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhchh
Q 024419 160 CWKHVFSFVVETMETAVKSWHETSKVDA 187 (268)
Q Consensus 160 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 187 (268)
...+......+++++|+..+++++...|
T Consensus 151 ~~la~~~~~~~~~~~A~~~~~~~~~~~~ 178 (225)
T 2vq2_A 151 KELARTKMLAGQLGDADYYFKKYQSRVE 178 (225)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3344445555666666666666655544
No 34
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.89 E-value=4.8e-21 Score=152.07 Aligned_cols=181 Identities=13% Similarity=0.151 Sum_probs=140.5
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HH
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLHLVKLNKALADAETTISLNPQW---EK 76 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~ 76 (268)
.|.++..++.+|..++..|+|++|+..|+++++.+|++ ..+++.+|.|+..+|++++|+..|++++..+|++ +.
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 46778999999999999999999999999999999999 8999999999999999999999999999998854 67
Q ss_pred HHHHHHHHHHH--------ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHH
Q 024419 77 GYFRKGCILEA--------MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFK 148 (268)
Q Consensus 77 ~~~~la~~~~~--------~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 148 (268)
+++.+|.++.. .|++++|+..|+++++.+|+++.+...+..+....+...
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~---------------------- 148 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLA---------------------- 148 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHH----------------------
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHH----------------------
Confidence 89999999999 999999999999999999999876644433322211111
Q ss_pred HHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH-------------HHHHh----------hhhhhhHhhhhH
Q 024419 149 SEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK-------------VYFLL----------DKEKTDTEKYAP 205 (268)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-------------~~~~~----------~~~~~a~~~~~~ 205 (268)
......+.++...+++++|+..|++++...|. +|..+ |++++|+..|++
T Consensus 149 --------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~ 220 (261)
T 3qky_A 149 --------RKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYER 220 (261)
T ss_dssp --------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHH
Confidence 01233444555567777777777777666654 23333 555666666666
Q ss_pred HhcCCccc
Q 024419 206 IVNVDKAF 213 (268)
Q Consensus 206 ~~~~~~~~ 213 (268)
++...|..
T Consensus 221 ~~~~~p~~ 228 (261)
T 3qky_A 221 LLQIFPDS 228 (261)
T ss_dssp HHHHCTTC
T ss_pred HHHHCCCC
Confidence 66665543
No 35
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.88 E-value=6.2e-22 Score=154.77 Aligned_cols=206 Identities=17% Similarity=0.226 Sum_probs=139.0
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024419 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI 84 (268)
Q Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 84 (268)
..+..++.+|..++..|++++|+..|+++++.+|.+..++..+|.++...|++++|+..+++++..+|.+..++..+|.+
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 100 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV 100 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHH
Q 024419 85 LEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHV 164 (268)
Q Consensus 85 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (268)
+...|++++|+..++++++.+|+++.++..++.++...|++++|..... ..+.. ...........+.
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~--~~~~~-----------~~~~~~~~~~l~~ 167 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQ--RAVEL-----------NENDTEARFQFGM 167 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHH--HHHHH-----------CTTCHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHH--HHHHh-----------CCccHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999976631 11111 1111112223333
Q ss_pred HHHHHHHHHHHHHhhhhhhhchhHHHHHhhhhhhhHhhhhHHhcCCccccC-ccchhHHHHHHHHH--HHHHHHHHhhhh
Q 024419 165 FSFVVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFES-PHTHGSCFQFLRQY--ADDSFSSAACLV 241 (268)
Q Consensus 165 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--a~~~~~ka~~~~ 241 (268)
+....+++++|+.. ++.++...|.... ....+.++...+++ |...|++++ .+
T Consensus 168 ~~~~~~~~~~A~~~------------------------~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~-~~ 222 (243)
T 2q7f_A 168 CLANEGMLDEALSQ------------------------FAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAI-DI 222 (243)
T ss_dssp HHHHHTCCHHHHHH------------------------HHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHH-HH
T ss_pred HHHHcCCHHHHHHH------------------------HHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHH-cc
Confidence 34444444444444 4444444332211 11245555555555 777888888 78
Q ss_pred CCCCccc
Q 024419 242 APKSIIS 248 (268)
Q Consensus 242 ~p~~~~~ 248 (268)
+|++..+
T Consensus 223 ~p~~~~~ 229 (243)
T 2q7f_A 223 QPDHMLA 229 (243)
T ss_dssp CTTCHHH
T ss_pred CcchHHH
Confidence 8876543
No 36
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.88 E-value=2.9e-21 Score=152.04 Aligned_cols=129 Identities=19% Similarity=0.226 Sum_probs=123.2
Q ss_pred chHh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 024419 3 AEAE-EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK 81 (268)
Q Consensus 3 ~~~~-~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 81 (268)
.|.+ +..++.+|..+...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..+++++..+|.+..++..+
T Consensus 32 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 111 (252)
T 2ho1_A 32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNY 111 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHH
Confidence 3554 889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHHHHHHHhHHH
Q 024419 82 GCILEAMEQYDDALSAFQTALQ--YNPQSAEVSRKIKRVSQLAKDKKRAQEV 131 (268)
Q Consensus 82 a~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 131 (268)
|.++...|++++|+..+++++. .+|.+..++..++.++...|++++|...
T Consensus 112 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 163 (252)
T 2ho1_A 112 GGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEY 163 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999999999999 8899999999999999999999999766
No 37
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.88 E-value=9.6e-23 Score=166.09 Aligned_cols=228 Identities=12% Similarity=0.085 Sum_probs=181.6
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH-
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK- 81 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l- 81 (268)
.|.++.++..+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+..+++++..+|.+..++..+
T Consensus 51 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 130 (327)
T 3cv0_A 51 APEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNL 130 (327)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC-----
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHh
Confidence 4677889999999999999999999999999999999999999999999999999999999999999999998888777
Q ss_pred -------------HH-HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHH
Q 024419 82 -------------GC-ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEF 147 (268)
Q Consensus 82 -------------a~-~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 147 (268)
|. ++...|++++|+..++++++.+|+++.++..++.++...|++++|..... ..+.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~--~~~~-------- 200 (327)
T 3cv0_A 131 QADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLR--RAVE-------- 200 (327)
T ss_dssp ---------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHH--HHHH--------
T ss_pred HHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHH--HHHH--------
Confidence 76 78899999999999999999999999999999999999999999977632 1111
Q ss_pred HHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH----------HHHHhhhhhhhHhhhhHHhcCCccccC--
Q 024419 148 KSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAFES-- 215 (268)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~~~~~~-- 215 (268)
..+.........+.+....+++++|+..+.+++...|. ++...|++++|...+++++.+.|....
T Consensus 201 ---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 277 (327)
T 3cv0_A 201 ---LRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPT 277 (327)
T ss_dssp ---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC--
T ss_pred ---hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcccccc
Confidence 11222234455666777789999999999999988875 577889999999999999999776211
Q ss_pred -----------ccchhHHHHHHHHH--HHHHHHHHhhhhCCC
Q 024419 216 -----------PHTHGSCFQFLRQY--ADDSFSSAACLVAPK 244 (268)
Q Consensus 216 -----------~~~~~~~~~~~~~~--a~~~~~ka~~~~~p~ 244 (268)
....+.++..++++ |...+++++ ...|+
T Consensus 278 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l-~~~~~ 318 (327)
T 3cv0_A 278 GEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV-EPFAK 318 (327)
T ss_dssp ---CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS-HHHHH
T ss_pred ccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-Hhcch
Confidence 11134444444544 666666666 55443
No 38
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.88 E-value=5.2e-22 Score=144.65 Aligned_cols=120 Identities=13% Similarity=0.097 Sum_probs=95.3
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 82 (268)
.|.++..++.+|.+++..|+|++|+++|+++++++|+++.+|..+|.+|..+|++++|+.+|+++++++|+++.+++.+|
T Consensus 27 ~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 106 (150)
T 4ga2_A 27 PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIA 106 (150)
T ss_dssp HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 45667777888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHccCHHHHHHH-HHHHHhhCCCCHHHHHHHHHHHHHH
Q 024419 83 CILEAMEQYDDALSA-FQTALQYNPQSAEVSRKIKRVSQLA 122 (268)
Q Consensus 83 ~~~~~~~~~~~A~~~-~~~~l~~~p~~~~~~~~l~~~~~~~ 122 (268)
.++...|++++|... ++++++++|+++.++...+.++...
T Consensus 107 ~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~ 147 (150)
T 4ga2_A 107 ELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCE 147 (150)
T ss_dssp HHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTC
T ss_pred HHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 888888888776655 4788888888888877777765443
No 39
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.88 E-value=5.9e-21 Score=163.74 Aligned_cols=242 Identities=14% Similarity=0.101 Sum_probs=129.3
Q ss_pred HhHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH---cCChHHHHHHHHHHHhhCCCCHHHHH
Q 024419 5 AEEMSLKDKGNEFFKA--GNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLH---LVKLNKALADAETTISLNPQWEKGYF 79 (268)
Q Consensus 5 ~~~~~~~~~g~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~ 79 (268)
..+..+..+|.++... ++|++|+++|+++++++|+++.++..+|.++.. .++.++|++.++++++++|+++.++.
T Consensus 134 ~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~ 213 (472)
T 4g1t_A 134 ESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKV 213 (472)
T ss_dssp CCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHH
T ss_pred hhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHH
Confidence 3456666677666543 467777777777777777777777777766443 34445555566666555555555555
Q ss_pred HHHHHHHHc----cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhh-------------------
Q 024419 80 RKGCILEAM----EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRS------------------- 136 (268)
Q Consensus 80 ~la~~~~~~----~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~------------------- 136 (268)
.+|..+... +++++|+..+++++..+|+++.++..+|.++...|++++|........
T Consensus 214 ~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~ 293 (472)
T 4g1t_A 214 LLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRA 293 (472)
T ss_dssp HHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 554443332 344455555555555555555555555555555555544443221000
Q ss_pred ---------------------hHHHhhhHHHHHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH------H
Q 024419 137 ---------------------NVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK------V 189 (268)
Q Consensus 137 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~ 189 (268)
..+.....-.....+.+.........+..+...+++++|+..|.+++.+.|. +
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~ 373 (472)
T 4g1t_A 294 KVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLL 373 (472)
T ss_dssp HHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHH
Confidence 0000000001111233445556667778888889999999999999877653 1
Q ss_pred --------HHHhhhhhhhHhhhhHHhcCCcccc-------------------------CccchhHHHHHHHHH--HHHHH
Q 024419 190 --------YFLLDKEKTDTEKYAPIVNVDKAFE-------------------------SPHTHGSCFQFLRQY--ADDSF 234 (268)
Q Consensus 190 --------~~~~~~~~~a~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~--a~~~~ 234 (268)
....|+.++|+..|.+++.+.|... .....|.++...|++ |.+.|
T Consensus 374 ~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y 453 (472)
T 4g1t_A 374 HLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDS 453 (472)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 2245778889999999988865431 111256677777777 99999
Q ss_pred HHHhhhhCCCCcc
Q 024419 235 SSAACLVAPKSII 247 (268)
Q Consensus 235 ~ka~~~~~p~~~~ 247 (268)
++|+ ++.|.+..
T Consensus 454 ~kAL-e~~~~~p~ 465 (472)
T 4g1t_A 454 ERGL-ESGSLIPS 465 (472)
T ss_dssp -------------
T ss_pred HHHH-hcCCCCCc
Confidence 9999 88887643
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.87 E-value=6.2e-22 Score=157.63 Aligned_cols=221 Identities=14% Similarity=0.078 Sum_probs=174.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcC----CCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Q 024419 14 GNEFFKAGNYLKAAALYTQAIKQD----PSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAME 89 (268)
Q Consensus 14 g~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 89 (268)
+..+...|++++|+..|+++++.. |.++.+++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|
T Consensus 12 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~ 91 (275)
T 1xnf_A 12 AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAG 91 (275)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT
T ss_pred eeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcc
Confidence 334455689999999999999983 5678899999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHHHHH
Q 024419 90 QYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVV 169 (268)
Q Consensus 90 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (268)
++++|+..|+++++++|+++.++..+|.++...|++++|..... ..+...+.. ........ .....
T Consensus 92 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~--~a~~~~~~~-----------~~~~~~~~-~~~~~ 157 (275)
T 1xnf_A 92 NFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLL--AFYQDDPND-----------PFRSLWLY-LAEQK 157 (275)
T ss_dssp CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHH--HHHHHCTTC-----------HHHHHHHH-HHHHH
T ss_pred CHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHH--HHHHhCCCC-----------hHHHHHHH-HHHHh
Confidence 99999999999999999999999999999999999999977632 111111111 11111112 22456
Q ss_pred HHHHHHHHhhhhhhhchhH---------HHHHhhhhhhhHhhhhHHhcCCccc-----cCccchhHHHHHHHHH--HHHH
Q 024419 170 ETMETAVKSWHETSKVDAK---------VYFLLDKEKTDTEKYAPIVNVDKAF-----ESPHTHGSCFQFLRQY--ADDS 233 (268)
Q Consensus 170 ~~~~~A~~~~~~~~~~~~~---------~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~--a~~~ 233 (268)
+++++|+..+.+++...|. .+...++..+|+..+..++...+.. ......|.++...+++ |...
T Consensus 158 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 237 (275)
T 1xnf_A 158 LDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATAL 237 (275)
T ss_dssp HCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHH
Confidence 8899999999888877664 3445567788999999998886642 1122366777777777 9999
Q ss_pred HHHHhhhhCCCCcccc
Q 024419 234 FSSAACLVAPKSIISY 249 (268)
Q Consensus 234 ~~ka~~~~~p~~~~~~ 249 (268)
|++++ .++|++...+
T Consensus 238 ~~~al-~~~p~~~~~~ 252 (275)
T 1xnf_A 238 FKLAV-ANNVHNFVEH 252 (275)
T ss_dssp HHHHH-TTCCTTCHHH
T ss_pred HHHHH-hCCchhHHHH
Confidence 99999 9999875544
No 41
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.87 E-value=2.5e-21 Score=140.89 Aligned_cols=107 Identities=13% Similarity=0.088 Sum_probs=104.8
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 82 (268)
.|.++.+++.+|..++..|++++|+..|++++..+|+++.+|+++|.|+..+|++++|+.+|++++.++|+++.+|+.+|
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg 111 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTG 111 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCH
Q 024419 83 CILEAMEQYDDALSAFQTALQYNPQSA 109 (268)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~~l~~~p~~~ 109 (268)
.++..+|++++|+..|++++++.|+.+
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999865
No 42
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.87 E-value=5.1e-21 Score=152.81 Aligned_cols=222 Identities=16% Similarity=0.173 Sum_probs=179.8
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCCCHHHH
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLH----LVKLNKALADAETTISLNPQWEKGY 78 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~ 78 (268)
.|.++.+++.+|..+...|++++|+.+|+++++ |+++.+++.+|.++.. .+++++|+..|+++++.+ ++.++
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~ 77 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC 77 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHH
Confidence 578899999999999999999999999999998 8889999999999999 999999999999999986 89999
Q ss_pred HHHHHHHHH----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----HHHHHHhHHHHhhhhhHHHhhhHHHHHHH
Q 024419 79 FRKGCILEA----MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL----AKDKKRAQEVENIRSNVDMVQHLDEFKSE 150 (268)
Q Consensus 79 ~~la~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 150 (268)
+.+|.++.. .+++++|+..|+++++. +++.++..+|.++.. .+++++|....... +.
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a--~~----------- 142 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKA--CD----------- 142 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHH--HH-----------
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHH--Hh-----------
Confidence 999999999 99999999999999987 489999999999998 89999997663211 11
Q ss_pred hhhhcCchhhhHHHHHHH----HHHHHHHHHhhhhhhhchhH--------HHHH----hhhhhhhHhhhhHHhcCCcccc
Q 024419 151 MSEKYGAEECWKHVFSFV----VETMETAVKSWHETSKVDAK--------VYFL----LDKEKTDTEKYAPIVNVDKAFE 214 (268)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~--------~~~~----~~~~~~a~~~~~~~~~~~~~~~ 214 (268)
..........+.++.. .+++++|+..|++++...+. +|.. .+++++|+..|++++..++..
T Consensus 143 --~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~- 219 (273)
T 1ouv_A 143 --LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGG- 219 (273)
T ss_dssp --TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHH-
T ss_pred --cCcHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHH-
Confidence 1112223344444544 67889999999998776543 4556 889999999999999986622
Q ss_pred CccchhHHHHH----HHHH--HHHHHHHHhhhhCCCCcc
Q 024419 215 SPHTHGSCFQF----LRQY--ADDSFSSAACLVAPKSII 247 (268)
Q Consensus 215 ~~~~~~~~~~~----~~~~--a~~~~~ka~~~~~p~~~~ 247 (268)
.....+.++.. .+++ |.+.|++|+ ++.|++..
T Consensus 220 a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~-~~~~~~a~ 257 (273)
T 1ouv_A 220 GCFNLGAMQYNGEGVTRNEKQAIENFKKGC-KLGAKGAC 257 (273)
T ss_dssp HHHHHHHHHHTTSSSSCCSTTHHHHHHHHH-HHTCHHHH
T ss_pred HHHHHHHHHHcCCCcccCHHHHHHHHHHHH-HcCCHHHH
Confidence 12225666665 5566 999999999 99998654
No 43
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.87 E-value=4.6e-21 Score=144.04 Aligned_cols=170 Identities=11% Similarity=0.127 Sum_probs=125.4
Q ss_pred CCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024419 38 PSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKR 117 (268)
Q Consensus 38 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 117 (268)
++++.+|+++|.+|..+|++++|+..|+++++++|+++.++..+|.++...|++++|+..+.+++..+|+++.++..++.
T Consensus 2 ge~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 2 GETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGS 81 (184)
T ss_dssp --CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhHHHHHhhhhh
Q 024419 118 VSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKVYFLLDKEK 197 (268)
Q Consensus 118 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 197 (268)
++...++++.+..... .. ..+.+.........+.++...+++++|+..|+
T Consensus 82 ~~~~~~~~~~a~~~~~--~a-----------~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~----------------- 131 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQ--RA-----------IALNTVYADAYYKLGLVYDSMGEHDKAIEAYE----------------- 131 (184)
T ss_dssp HHHHTTCHHHHHHHHH--HH-----------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH-----------------
T ss_pred HHHHcCCHHHHHHHHH--HH-----------HHhCccchHHHHHHHHHHHHhCCchhHHHHHH-----------------
Confidence 9998888888865521 00 11112222223333444444444555555544
Q ss_pred hhHhhhhHHhcCCccccCc-cchhHHHHHHHHH--HHHHHHHHhhhhCCCC
Q 024419 198 TDTEKYAPIVNVDKAFESP-HTHGSCFQFLRQY--ADDSFSSAACLVAPKS 245 (268)
Q Consensus 198 ~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--a~~~~~ka~~~~~p~~ 245 (268)
+++.++|..... ...|.++...|++ |.+.|++|+ +++|++
T Consensus 132 -------~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p~~ 174 (184)
T 3vtx_A 132 -------KTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKAL-EKEEKK 174 (184)
T ss_dssp -------HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTTHHH
T ss_pred -------HHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHH-hCCccC
Confidence 444444433211 2256666667766 888888888 888776
No 44
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.87 E-value=7.9e-21 Score=133.95 Aligned_cols=118 Identities=27% Similarity=0.466 Sum_probs=113.4
Q ss_pred hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024419 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC 83 (268)
Q Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 83 (268)
|.++..+..+|..++..|+|++|+..|+++++.+|+++.++.++|.|+..+|++++|+..|++++.++|+++.+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 57789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHH
Q 024419 84 ILEAMEQYDDALSAFQTALQYN------PQSAEVSRKIKRVSQL 121 (268)
Q Consensus 84 ~~~~~~~~~~A~~~~~~~l~~~------p~~~~~~~~l~~~~~~ 121 (268)
++..+|++++|+..|+++++++ |++..++..++.+...
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 9999999999999999999999 9999999888877643
No 45
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.86 E-value=1.7e-20 Score=160.88 Aligned_cols=122 Identities=14% Similarity=0.065 Sum_probs=104.7
Q ss_pred hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---------CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhC---
Q 024419 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ---------DPSNPTLFSNRAAAFLHLVKLNKALADAETTISLN--- 71 (268)
Q Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--- 71 (268)
+..+..+..+|.++...|++++|+++|++|+++ +|....+|.++|.+|..+|++++|+..+++++.+.
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 344667888999999999999999999999986 67778899999999999999999999999999873
Q ss_pred -----CCCHHHHHHHHHHHHHc--cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 024419 72 -----PQWEKGYFRKGCILEAM--EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDK 125 (268)
Q Consensus 72 -----p~~~~~~~~la~~~~~~--~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~ 125 (268)
+..+.++..+|.++... ++|++|+++|+++++++|+++.++..++.+....+.+
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~ 188 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNW 188 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHS
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCc
Confidence 45678888888877765 4799999999999999999999999999887666544
No 46
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.86 E-value=5.6e-21 Score=152.01 Aligned_cols=197 Identities=8% Similarity=0.062 Sum_probs=153.6
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHH
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN----PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGY 78 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 78 (268)
.|.++.++..+|.++...|++++|+..++++++ .|.+ ..++..+|.++...|++++|+..|+++++.+|.++.++
T Consensus 33 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 111 (272)
T 3u4t_A 33 KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMY 111 (272)
T ss_dssp TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHH
T ss_pred CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHH
Confidence 456677899999999999999999999999999 4444 34599999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCch
Q 024419 79 FRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAE 158 (268)
Q Consensus 79 ~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (268)
..+|.++...|++++|+..|+++++++|+++.++..+|......+++++|..... ..+... +.....
T Consensus 112 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~--~a~~~~-----------p~~~~~ 178 (272)
T 3u4t_A 112 GQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFV--KVLELK-----------PNIYIG 178 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH--HHHHHS-----------TTCHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhC-----------ccchHH
Confidence 9999999999999999999999999999999999999944444558888866532 111111 111222
Q ss_pred hhhHHHHHHHHHH---HHHHHHhhhhhhhch---h---------------HHHHHhhhhhhhHhhhhHHhcCCccc
Q 024419 159 ECWKHVFSFVVET---METAVKSWHETSKVD---A---------------KVYFLLDKEKTDTEKYAPIVNVDKAF 213 (268)
Q Consensus 159 ~~~~~~~~~~~~~---~~~A~~~~~~~~~~~---~---------------~~~~~~~~~~~a~~~~~~~~~~~~~~ 213 (268)
....+......+. +++|+..+++++.+. | .+|...|++++|+..+++++.++|..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 254 (272)
T 3u4t_A 179 YLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTN 254 (272)
T ss_dssp HHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccH
Confidence 3334444444444 445555555554443 1 15668899999999999999999865
No 47
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.86 E-value=2.7e-20 Score=135.23 Aligned_cols=121 Identities=14% Similarity=0.096 Sum_probs=112.2
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 82 (268)
.|.++.+++.+|..++..|++++|+..|++++..+|+++.+|+++|.++..+|++++|+..|++++.++|+++.+++.+|
T Consensus 17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 96 (148)
T 2vgx_A 17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAA 96 (148)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHH
T ss_pred CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 024419 83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAK 123 (268)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~ 123 (268)
.++..+|++++|+..|+++++++|+++........+...+.
T Consensus 97 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~ 137 (148)
T 2vgx_A 97 ECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLE 137 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHH
Confidence 99999999999999999999999998876555544444333
No 48
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.85 E-value=3.8e-20 Score=133.42 Aligned_cols=123 Identities=15% Similarity=0.100 Sum_probs=114.5
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 82 (268)
.|.+...++.+|..++..|++++|+..|++++..+|+++.+|+.+|.++..+|++++|+.+|++++.++|+++.+++.+|
T Consensus 14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 93 (142)
T 2xcb_A 14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAA 93 (142)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 024419 83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDK 125 (268)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~ 125 (268)
.++..+|++++|+..|+++++++|+++........+...++..
T Consensus 94 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l 136 (142)
T 2xcb_A 94 ECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAV 136 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHH
Confidence 9999999999999999999999999987766666655544443
No 49
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.85 E-value=5.5e-20 Score=158.37 Aligned_cols=194 Identities=12% Similarity=0.117 Sum_probs=163.8
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCh-HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 024419 22 NYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKL-NKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQT 100 (268)
Q Consensus 22 ~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 100 (268)
.+++|+..+.++....|.++.+++.+|.++...|++ ++|+..|+++++++|+++.+|..+|.++...|++++|+..|++
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 377888889998999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHH---------HHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHHHHH--
Q 024419 101 ALQYNPQSAEVSRKIKRVSQLA---------KDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVV-- 169 (268)
Q Consensus 101 ~l~~~p~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 169 (268)
+++++|+ ..++..+|.++... |++++|..... ..+. +.+.....+...+..+...
T Consensus 163 al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~--~al~-----------~~p~~~~~~~~lg~~~~~~~~ 228 (474)
T 4abn_A 163 ALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAK--LAVQ-----------MDVLDGRSWYILGNAYLSLYF 228 (474)
T ss_dssp HHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHH--HHHH-----------HCTTCHHHHHHHHHHHHHHHH
T ss_pred HHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHH--HHHH-----------hCCCCHHHHHHHHHHHHHHHH
Confidence 9999999 79999999999999 99999976631 1111 2233344556666667777
Q ss_pred ------HHHHHHHHhhhhhhhchh---H----------HHHHhhhhhhhHhhhhHHhcCCccccCcc-chhHHHHHHHHH
Q 024419 170 ------ETMETAVKSWHETSKVDA---K----------VYFLLDKEKTDTEKYAPIVNVDKAFESPH-THGSCFQFLRQY 229 (268)
Q Consensus 170 ------~~~~~A~~~~~~~~~~~~---~----------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 229 (268)
+++++|+..|++++.++| . +|..+|++++|+..|++++.++|...... ..+.++..++++
T Consensus 229 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~ 308 (474)
T 4abn_A 229 NTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRL 308 (474)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred hhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999998 4 57788999999999999999998763222 255566666655
No 50
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.85 E-value=3.4e-19 Score=144.98 Aligned_cols=209 Identities=11% Similarity=0.031 Sum_probs=165.0
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHH-------cCCh-------HHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHc
Q 024419 24 LKAAALYTQAIKQDPSNPTLFSNRAAAFLH-------LVKL-------NKALADAETTIS-LNPQWEKGYFRKGCILEAM 88 (268)
Q Consensus 24 ~~A~~~~~~al~~~p~~~~~~~~~a~~~~~-------~~~~-------~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~ 88 (268)
++|+..|++++..+|.++.+|+.+|..+.. .|++ ++|+..|++++. ++|++..+|..+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 789999999999999999999999999874 5886 999999999999 7999999999999999999
Q ss_pred cCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHH--H
Q 024419 89 EQYDDALSAFQTALQYNPQSAE-VSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHV--F 165 (268)
Q Consensus 89 ~~~~~A~~~~~~~l~~~p~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 165 (268)
|++++|+..|+++++++|.++. +|..++.++...|++++|...... . +.........+.+. +
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~--a-------------~~~~p~~~~~~~~~a~~ 177 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK--A-------------REDARTRHHVYVTAALM 177 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH--H-------------HTSTTCCTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHH--H-------------HhcCCCCHHHHHHHHHH
Confidence 9999999999999999999987 999999999999999998766321 1 11111112122222 2
Q ss_pred HHH-HHHHHHHHHhhhhhhhchhH----------HHHHhhhhhhhHhhhhHHhcC---Ccc-cc-CccchhHHHHHHHHH
Q 024419 166 SFV-VETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNV---DKA-FE-SPHTHGSCFQFLRQY 229 (268)
Q Consensus 166 ~~~-~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~---~~~-~~-~~~~~~~~~~~~~~~ 229 (268)
... .+++++|+..|+++++.+|. ++...|+.++|...|++++.. +|. .. .....+.+....|.+
T Consensus 178 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~ 257 (308)
T 2ond_A 178 EYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 257 (308)
T ss_dssp HHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 221 47899999999999999886 345678999999999999995 432 11 111134455555655
Q ss_pred --HHHHHHHHhhhhCCCCccc
Q 024419 230 --ADDSFSSAACLVAPKSIIS 248 (268)
Q Consensus 230 --a~~~~~ka~~~~~p~~~~~ 248 (268)
+...+++++ +..|++...
T Consensus 258 ~~a~~~~~~a~-~~~p~~~~~ 277 (308)
T 2ond_A 258 ASILKVEKRRF-TAFREEYEG 277 (308)
T ss_dssp HHHHHHHHHHH-HHTTTTTSS
T ss_pred HHHHHHHHHHH-HHccccccc
Confidence 999999999 999987643
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.85 E-value=1.3e-19 Score=141.48 Aligned_cols=173 Identities=14% Similarity=0.102 Sum_probs=145.1
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 82 (268)
.|.++.++..+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+..+++++..+|.++.++..+|
T Consensus 53 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 132 (243)
T 2q7f_A 53 NKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLG 132 (243)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhH
Q 024419 83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWK 162 (268)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (268)
.++...|++++|+..++++++.+|+++.++..++.++...|++++|..... ..+. ............
T Consensus 133 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~--~~~~-----------~~~~~~~~~~~l 199 (243)
T 2q7f_A 133 TVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFA--AVTE-----------QDPGHADAFYNA 199 (243)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHH--HHHH-----------HCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHH--HHHH-----------hCcccHHHHHHH
Confidence 999999999999999999999999999999999999999999999976632 1111 111122233444
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhchhH
Q 024419 163 HVFSFVVETMETAVKSWHETSKVDAK 188 (268)
Q Consensus 163 ~~~~~~~~~~~~A~~~~~~~~~~~~~ 188 (268)
+.++...+++++|+..+++++.++|.
T Consensus 200 a~~~~~~~~~~~A~~~~~~~~~~~p~ 225 (243)
T 2q7f_A 200 GVTYAYKENREKALEMLDKAIDIQPD 225 (243)
T ss_dssp HHHHHHTTCTTHHHHHHHHHHHHCTT
T ss_pred HHHHHHccCHHHHHHHHHHHHccCcc
Confidence 44555556666666666666666554
No 52
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.85 E-value=2.5e-19 Score=139.15 Aligned_cols=178 Identities=16% Similarity=0.112 Sum_probs=135.8
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh---HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHH---HHH
Q 024419 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP---TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEK---GYF 79 (268)
Q Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~ 79 (268)
.+..++.+|..++..|+|++|+..|++++...|++. .+++.+|.++..+|++++|+..|+++++.+|++.. +++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 467899999999999999999999999999999874 78999999999999999999999999999999864 899
Q ss_pred HHHHHHHH------------------ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHh
Q 024419 80 RKGCILEA------------------MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMV 141 (268)
Q Consensus 80 ~la~~~~~------------------~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 141 (268)
.+|.++.. .|++++|+..|+++++.+|+++.++..+..+....+....
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~-------------- 148 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAK-------------- 148 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHH--------------
Confidence 99999886 5799999999999999999998766543332221111100
Q ss_pred hhHHHHHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH-------------HHHHhhhhhhhHhhhhHHhc
Q 024419 142 QHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK-------------VYFLLDKEKTDTEKYAPIVN 208 (268)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-------------~~~~~~~~~~a~~~~~~~~~ 208 (268)
.....+.++...+++++|+..|+++++..|+ ++..+|+.++|+..++.+..
T Consensus 149 ----------------~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 149 ----------------YEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA 212 (225)
T ss_dssp ----------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 1123344555667777777777777776654 34455666666666665555
Q ss_pred CCccc
Q 024419 209 VDKAF 213 (268)
Q Consensus 209 ~~~~~ 213 (268)
..|..
T Consensus 213 ~~~~~ 217 (225)
T 2yhc_A 213 NSSNT 217 (225)
T ss_dssp CCSCC
T ss_pred hCCCc
Confidence 55544
No 53
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.84 E-value=7.5e-20 Score=129.31 Aligned_cols=112 Identities=26% Similarity=0.391 Sum_probs=102.3
Q ss_pred hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-------HH
Q 024419 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW-------EK 76 (268)
Q Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-------~~ 76 (268)
++.+.++.++|+.++..|+|++|+.+|+++++++|+++.+|.++|.||..+|++++|+..|+++++++|++ ..
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~ 84 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence 56688999999999999999999999999999999999999999999999999999999999999998876 35
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419 77 GYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIK 116 (268)
Q Consensus 77 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~ 116 (268)
++.++|.++..+|++++|++.|+++++.+|+ ++....+.
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~ 123 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVK 123 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHH
Confidence 8999999999999999999999999999885 55544443
No 54
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.84 E-value=1.2e-19 Score=135.46 Aligned_cols=172 Identities=16% Similarity=0.141 Sum_probs=144.1
Q ss_pred hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024419 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC 83 (268)
Q Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 83 (268)
+..+..+..+|..+...|++++|+..++++++.+|.+..++..+|.++...|++++|+..+++++..+|.++.++..+|.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 84 (186)
T 3as5_A 5 DIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGL 84 (186)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 35577899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHH
Q 024419 84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKH 163 (268)
Q Consensus 84 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (268)
++...|++++|+..++++++.+|+++.++..++.++...|++++|..... ..+. ..+.........+
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~--~~~~-----------~~~~~~~~~~~la 151 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFK--IALG-----------LRPNEGKVHRAIA 151 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH--HHHH-----------HCTTCHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHH--HHHh-----------cCccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999976632 1111 1111222334444
Q ss_pred HHHHHHHHHHHHHHhhhhhhhchhH
Q 024419 164 VFSFVVETMETAVKSWHETSKVDAK 188 (268)
Q Consensus 164 ~~~~~~~~~~~A~~~~~~~~~~~~~ 188 (268)
.+....+++++|+..+.+++.+.|.
T Consensus 152 ~~~~~~~~~~~A~~~~~~~~~~~~~ 176 (186)
T 3as5_A 152 FSYEQMGRHEEALPHFKKANELDEG 176 (186)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 4555566677777777766666554
No 55
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.84 E-value=1.4e-19 Score=152.34 Aligned_cols=234 Identities=16% Similarity=0.221 Sum_probs=184.5
Q ss_pred hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh----HHHHHHHHHHHHcCChHHHHHHHHHHHhh------CCC
Q 024419 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP----TLFSNRAAAFLHLVKLNKALADAETTISL------NPQ 73 (268)
Q Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p~ 73 (268)
+..+..+..+|..++..|++++|+..|+++++.+|++. .++..+|.++...|++++|+..+++++.+ +|.
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 124 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG 124 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence 56778889999999999999999999999999999986 58999999999999999999999999998 577
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHHHH-----------------HHHhHH
Q 024419 74 WEKGYFRKGCILEAMEQYDDALSAFQTALQY------NPQSAEVSRKIKRVSQLAKD-----------------KKRAQE 130 (268)
Q Consensus 74 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~------~p~~~~~~~~l~~~~~~~~~-----------------~~~a~~ 130 (268)
...++..+|.++...|++++|+..|++++++ .|....++..+|.++...|+ +++|..
T Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~ 204 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE 204 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence 7899999999999999999999999999998 56677899999999999999 888866
Q ss_pred HHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH----------------HHHHhh
Q 024419 131 VENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK----------------VYFLLD 194 (268)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------------~~~~~~ 194 (268)
.... .+....... ........+...+.++...+++++|+..+.+++.+.+. ++...|
T Consensus 205 ~~~~--al~~~~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 277 (411)
T 4a1s_A 205 FYQE--NLKLMRDLG-----DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLG 277 (411)
T ss_dssp HHHH--HHHHHHHHT-----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTT
T ss_pred HHHH--HHHHHHHcC-----CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCc
Confidence 5321 111111100 00112234455666777788899999999988877764 466788
Q ss_pred hhhhhHhhhhHHhcCCccccCc-------cchhHHHHHHHHH--HHHHHHHHhhhhCCCC
Q 024419 195 KEKTDTEKYAPIVNVDKAFESP-------HTHGSCFQFLRQY--ADDSFSSAACLVAPKS 245 (268)
Q Consensus 195 ~~~~a~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~--a~~~~~ka~~~~~p~~ 245 (268)
++++|+..++.++.+.+..... ...+.++...+++ |...|++++ .+.++.
T Consensus 278 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~~~~ 336 (411)
T 4a1s_A 278 QFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL-AIAQEL 336 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHC
Confidence 9999999999999886543111 1245555666666 999999999 776543
No 56
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.84 E-value=1.7e-19 Score=140.18 Aligned_cols=203 Identities=12% Similarity=0.106 Sum_probs=154.1
Q ss_pred CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 024419 37 DPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP-QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKI 115 (268)
Q Consensus 37 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l 115 (268)
.+.++..++.+|.++...|++++|+..|++++.++| .+..+++.+|.++...|++++|+..|+++++.+|+++.++..+
T Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 82 (228)
T 4i17_A 3 QTTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGK 82 (228)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 356779999999999999999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH-----HH
Q 024419 116 KRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK-----VY 190 (268)
Q Consensus 116 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~ 190 (268)
|.++...|++++|..... ..+...+.... ........+...|......+++++|+..|++++.++|. ++
T Consensus 83 ~~~~~~~~~~~~A~~~~~--~al~~~p~~~~----~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 156 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLT--EGIKAVPGNAT----IEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDAL 156 (228)
T ss_dssp HHHHHHTTCHHHHHHHHH--HHHHHSTTCHH----HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHH--HHHHHCCCcHH----HHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHH
Confidence 999999999999976632 22222222111 11122345666777788899999999999999999887 34
Q ss_pred HHhhhhhhh--HhhhhHHhcCCccccCccchhHHHHHHHHH--HHHHHHHHhhhhCCCCcc
Q 024419 191 FLLDKEKTD--TEKYAPIVNVDKAFESPHTHGSCFQFLRQY--ADDSFSSAACLVAPKSII 247 (268)
Q Consensus 191 ~~~~~~~~a--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--a~~~~~ka~~~~~p~~~~ 247 (268)
..+|..... ...+..+..+.+... ....+......+.| |...|++|+ +++|++..
T Consensus 157 ~~l~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~A~~~~~~a~-~l~p~~~~ 215 (228)
T 4i17_A 157 YSLGVLFYNNGADVLRKATPLASSNK-EKYASEKAKADAAFKKAVDYLGEAV-TLSPNRTE 215 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGTTTCH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHCTTCHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCH-HHHHHHHHHHHHHHHHHHHHHHHHh-hcCCCCHH
Confidence 444443322 222355555543321 11133344455566 999999999 99999854
No 57
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.84 E-value=1.9e-20 Score=135.20 Aligned_cols=118 Identities=17% Similarity=0.239 Sum_probs=109.3
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-------ChH-----HHHHHHHHHHHcCChHHHHHHHHHHHhh--
Q 024419 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPS-------NPT-----LFSNRAAAFLHLVKLNKALADAETTISL-- 70 (268)
Q Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-------~~~-----~~~~~a~~~~~~~~~~~A~~~~~~al~~-- 70 (268)
..+..+..+|..++..|+|++|+..|+++++++|+ +.. +|.++|.|+..+|++++|+.+|+++|++
T Consensus 9 ~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n 88 (159)
T 2hr2_A 9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 88 (159)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 45778899999999999999999999999999999 444 9999999999999999999999999999
Q ss_pred -----CCCCHHHH----HHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 024419 71 -----NPQWEKGY----FRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA 122 (268)
Q Consensus 71 -----~p~~~~~~----~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 122 (268)
+|+++.+| +++|.++..+|++++|+.+|+++++++|++..+...+..+....
T Consensus 89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~ 149 (159)
T 2hr2_A 89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVA 149 (159)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHH
T ss_pred ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 99999999 99999999999999999999999999999988877777665444
No 58
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.84 E-value=3.7e-21 Score=140.13 Aligned_cols=118 Identities=14% Similarity=0.048 Sum_probs=109.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHH
Q 024419 13 KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYD 92 (268)
Q Consensus 13 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 92 (268)
+|.++...|++++|+..+++++..+|+++.+++.+|.+|..+|++++|+..|+++++++|+++.+|+.+|.++...|+++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence 67788888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHH
Q 024419 93 DALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQE 130 (268)
Q Consensus 93 ~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~ 130 (268)
+|+..|+++++++|+++.++..+|.++...+++++|..
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~ 120 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAK 120 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Confidence 99999999999999999999999999999998876543
No 59
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.84 E-value=1.6e-19 Score=133.29 Aligned_cols=116 Identities=31% Similarity=0.406 Sum_probs=109.7
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 82 (268)
.+.++..++.+|..++..|+|++|+..|+++++.+|+++.+++++|.||..+|++++|+..|++++.++|+++.+|+.+|
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024419 83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRV 118 (268)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 118 (268)
.++..+|++++|+..|+++++++|++..++...+..
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 999999999999999999999999998866555443
No 60
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.84 E-value=7.1e-20 Score=134.87 Aligned_cols=124 Identities=27% Similarity=0.395 Sum_probs=115.0
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------------------CCCChHHHHHHHHHHHHcCChHHHHHHHHH
Q 024419 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ------------------DPSNPTLFSNRAAAFLHLVKLNKALADAET 66 (268)
Q Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~------------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 66 (268)
..+..+..+|..++..|+|++|+..|++++.. +|.+..+++++|.||..+|++++|+..+++
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 45788999999999999999999999999999 777789999999999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHHHHHHHh
Q 024419 67 TISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSA-EVSRKIKRVSQLAKDKKRA 128 (268)
Q Consensus 67 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~~l~~~~~~~~~~~~a 128 (268)
++.++|+++.+++.+|.++..+|++++|+..|+++++++|+++ .+...++.+....+...+.
T Consensus 89 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~ 151 (162)
T 3rkv_A 89 VLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKAD 151 (162)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999 7788888887776655443
No 61
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.84 E-value=1.9e-20 Score=167.90 Aligned_cols=164 Identities=11% Similarity=0.157 Sum_probs=144.8
Q ss_pred cCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 024419 36 QDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKI 115 (268)
Q Consensus 36 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l 115 (268)
-.|+++.++.++|.++..+|++++|+..|+++++++|+++.++.++|.++..+|++++|+..|+++++++|+++.++.++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL 83 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 83 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH-------
Q 024419 116 KRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK------- 188 (268)
Q Consensus 116 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------- 188 (268)
|.++..+|++++|++... +.+ .+.+.....+...+.++..++++++|+..|+++++++|+
T Consensus 84 g~~l~~~g~~~~A~~~~~--kAl-----------~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~ 150 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYT--RAI-----------QINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCN 150 (723)
T ss_dssp HHHHHHTTCHHHHHHHHH--HHH-----------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHH--HHH-----------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhh
Confidence 999999999999976631 111 233445556677888888999999999999999999996
Q ss_pred ---HHHHhhhhhhhHhhhhHHhcCCcc
Q 024419 189 ---VYFLLDKEKTDTEKYAPIVNVDKA 212 (268)
Q Consensus 189 ---~~~~~~~~~~a~~~~~~~~~~~~~ 212 (268)
++..+|++++|.+.+++++.+.+.
T Consensus 151 L~~~l~~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 151 LAHCLQIVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp HHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred hhhHHHhcccHHHHHHHHHHHHHhChh
Confidence 567889999999999999987543
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.83 E-value=6.7e-20 Score=153.59 Aligned_cols=232 Identities=17% Similarity=0.241 Sum_probs=167.3
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----hHHHHHHHHHHHHcCChHHHHHHHHHHHhh------CCCC
Q 024419 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN----PTLFSNRAAAFLHLVKLNKALADAETTISL------NPQW 74 (268)
Q Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p~~ 74 (268)
..+.++..+|..++..|++++|+..|+++++..|.+ ..++..+|.++...|++++|+..+++++.+ .|..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 456788999999999999999999999999999998 468999999999999999999999999987 4455
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHH--------------------HHHh
Q 024419 75 EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS------AEVSRKIKRVSQLAKD--------------------KKRA 128 (268)
Q Consensus 75 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~l~~~~~~~~~--------------------~~~a 128 (268)
+.++..+|.++...|++++|+..+++++++.|.. ..++..+|.++...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 7899999999999999999999999999987754 4589999999999999 8888
Q ss_pred HHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH----------------HHHH
Q 024419 129 QEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK----------------VYFL 192 (268)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------------~~~~ 192 (268)
....... +....... ............+.++...+++++|+..+.+++.+.+. ++..
T Consensus 167 ~~~~~~a--l~~~~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 239 (406)
T 3sf4_A 167 VDFYEEN--LSLVTALG-----DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF 239 (406)
T ss_dssp HHHHHHH--HHHHHHTT-----CHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--HHHHHhcc-----CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 7653211 11100000 00111223344455566667777777777776665543 3556
Q ss_pred hhhhhhhHhhhhHHhcCCccccCcc-------chhHHHHHHHHH--HHHHHHHHhhhhCCC
Q 024419 193 LDKEKTDTEKYAPIVNVDKAFESPH-------THGSCFQFLRQY--ADDSFSSAACLVAPK 244 (268)
Q Consensus 193 ~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~--a~~~~~ka~~~~~p~ 244 (268)
.|++++|+..+++++.+.+...... ..|.++...+++ |...|++++ .+.|+
T Consensus 240 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~-~~~~~ 299 (406)
T 3sf4_A 240 LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL-AIAQE 299 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHH
T ss_pred cCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH-HHHHh
Confidence 6777777777777776644321111 134444444455 777777777 66544
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.83 E-value=6.8e-19 Score=143.25 Aligned_cols=234 Identities=17% Similarity=0.243 Sum_probs=180.9
Q ss_pred hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----hHHHHHHHHHHHHcCChHHHHHHHHHHHhh------CCC
Q 024419 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN----PTLFSNRAAAFLHLVKLNKALADAETTISL------NPQ 73 (268)
Q Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p~ 73 (268)
+.....++..|..++..|++++|+..|+++++.+|++ ..++..+|.++...|++++|+..+++++.+ .|.
T Consensus 2 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 81 (338)
T 3ro2_A 2 SASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 81 (338)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHH
Confidence 4567789999999999999999999999999999998 478899999999999999999999999987 455
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHH--------------------HHH
Q 024419 74 WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS------AEVSRKIKRVSQLAKD--------------------KKR 127 (268)
Q Consensus 74 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~l~~~~~~~~~--------------------~~~ 127 (268)
.+.++..+|.++...|++++|+..+++++++.|.. ..++..+|.++...|+ +++
T Consensus 82 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (338)
T 3ro2_A 82 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQA 161 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHH
Confidence 67899999999999999999999999999987654 3489999999999999 888
Q ss_pred hHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH----------------HHH
Q 024419 128 AQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK----------------VYF 191 (268)
Q Consensus 128 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------------~~~ 191 (268)
|...... .+....... ............+..+...+++++|+..+.+++.+.+. ++.
T Consensus 162 A~~~~~~--a~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~ 234 (338)
T 3ro2_A 162 AVDLYEE--NLSLVTALG-----DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYI 234 (338)
T ss_dssp HHHHHHH--HHHHHHHHT-----CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--HHHHHHhcC-----CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence 8665321 111111100 01111224455566677788899999999988877654 466
Q ss_pred HhhhhhhhHhhhhHHhcCCccccCcc-------chhHHHHHHHHH--HHHHHHHHhhhhCCCC
Q 024419 192 LLDKEKTDTEKYAPIVNVDKAFESPH-------THGSCFQFLRQY--ADDSFSSAACLVAPKS 245 (268)
Q Consensus 192 ~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~--a~~~~~ka~~~~~p~~ 245 (268)
..|++++|...++.++.+.+...... ..+.++...+++ |...|++++ .+.|..
T Consensus 235 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~-~~~~~~ 296 (338)
T 3ro2_A 235 FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL-AIAQEL 296 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HHHHhc
Confidence 88999999999999998755432111 145555566666 999999999 776643
No 64
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.83 E-value=3.2e-19 Score=143.29 Aligned_cols=106 Identities=31% Similarity=0.479 Sum_probs=102.8
Q ss_pred hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024419 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC 83 (268)
Q Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 83 (268)
|.++..+..+|..++..|++++|+..|++++..+|+++.++.++|.++..+|++++|+..++++++++|+++.+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCH
Q 024419 84 ILEAMEQYDDALSAFQTALQYNPQSA 109 (268)
Q Consensus 84 ~~~~~~~~~~A~~~~~~~l~~~p~~~ 109 (268)
++..+|++++|+..|+++++++|+++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~ 106 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQR 106 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccch
Confidence 99999999999999999999999774
No 65
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.83 E-value=6.3e-19 Score=145.18 Aligned_cols=128 Identities=21% Similarity=0.317 Sum_probs=123.5
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------------hHHHHHHHHHHHHcCChHHHHHHHHHH
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---------------PTLFSNRAAAFLHLVKLNKALADAETT 67 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~a 67 (268)
.|..+.++..+|..++..|++++|+..|++++.++|.+ ..++.++|.|+..+|++++|+.+|+++
T Consensus 143 ~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 222 (336)
T 1p5q_A 143 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA 222 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999 699999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHH
Q 024419 68 ISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQE 130 (268)
Q Consensus 68 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~ 130 (268)
+.++|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++..+++++++..
T Consensus 223 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 285 (336)
T 1p5q_A 223 LELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREK 285 (336)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999988854
No 66
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.83 E-value=5.2e-20 Score=148.82 Aligned_cols=237 Identities=12% Similarity=0.064 Sum_probs=171.5
Q ss_pred CchHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh---
Q 024419 2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ--------DPSNPTLFSNRAAAFLHLVKLNKALADAETTISL--- 70 (268)
Q Consensus 2 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--- 70 (268)
..|..+.++..+|..+...|++++|+..++++++. +|....++..+|.++...|++++|+..+++++.+
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 35788999999999999999999999999999995 6777899999999999999999999999999987
Q ss_pred -----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhh
Q 024419 71 -----NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYN--------PQSAEVSRKIKRVSQLAKDKKRAQEVENIRSN 137 (268)
Q Consensus 71 -----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--------p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 137 (268)
+|....++..+|.++...|++++|+..|++++++. |....++..+|.++...|++++|.......
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a-- 179 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRA-- 179 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH--
T ss_pred HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH--
Confidence 45668899999999999999999999999999884 566778999999999999999997764211
Q ss_pred HHHhhhHHHHHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhHH-------------------------HHH
Q 024419 138 VDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKV-------------------------YFL 192 (268)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------------------------~~~ 192 (268)
+...... ...............+.++...+++++|+..+.+++.+.|.. +..
T Consensus 180 ~~~~~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (311)
T 3nf1_A 180 LEIYQTK---LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKD 256 (311)
T ss_dssp HHHHHHT---SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC------
T ss_pred HHHHHHH---hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhh
Confidence 1110000 000011122334555667778899999999999998776541 112
Q ss_pred hhhhhhhHhhhhHHhcCCccccC-ccchhHHHHHHHHH--HHHHHHHHhhhhCCC
Q 024419 193 LDKEKTDTEKYAPIVNVDKAFES-PHTHGSCFQFLRQY--ADDSFSSAACLVAPK 244 (268)
Q Consensus 193 ~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--a~~~~~ka~~~~~p~ 244 (268)
.+...++...+..++...|.... ....+.++...|++ |.+.|++|+ ++.|+
T Consensus 257 ~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~l~~~ 310 (311)
T 3nf1_A 257 GTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAM-RSRKQ 310 (311)
T ss_dssp -CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHHC-
T ss_pred HHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHhhc
Confidence 23334444444444444443211 12266777777777 999999999 88875
No 67
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.82 E-value=4.2e-19 Score=139.60 Aligned_cols=125 Identities=14% Similarity=0.158 Sum_probs=93.2
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC------
Q 024419 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN-------PTLFSNRAAAFLHLVKLNKALADAETTISLNP------ 72 (268)
Q Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p------ 72 (268)
++.++..+|.++...|++++|+..++++++.+|++ +.++..+|.++...|++++|+..|++++.++|
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 116 (258)
T 3uq3_A 37 DITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILT 116 (258)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHH
T ss_pred cHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHH
Confidence 46788999999999999999999999999999877 79999999999999999999999999999555
Q ss_pred --------------------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHH
Q 024419 73 --------------------QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQE 130 (268)
Q Consensus 73 --------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~ 130 (268)
.++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|..
T Consensus 117 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 194 (258)
T 3uq3_A 117 KLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIA 194 (258)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHH
Confidence 4444555555555555555555555555555555555555555555555555555543
No 68
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.81 E-value=9.5e-19 Score=124.76 Aligned_cols=123 Identities=27% Similarity=0.431 Sum_probs=113.9
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 82 (268)
.|.++..++.+|..++..|++++|+..|++++..+|+++.+++++|.|+..+|++++|+..+++++.++|+++.+++.+|
T Consensus 5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHHHHHH
Q 024419 83 CILEAMEQYDDALSAFQTALQYNPQ-----SAEVSRKIKRVSQLAKDK 125 (268)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~~l~~~p~-----~~~~~~~l~~~~~~~~~~ 125 (268)
.++...|++++|+..|+++++++|+ +..+...+..+.......
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~~ 132 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNS 132 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998 777877777776554433
No 69
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.81 E-value=1.1e-18 Score=137.30 Aligned_cols=130 Identities=14% Similarity=0.135 Sum_probs=124.3
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCHHHHHH
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS--LNPQWEKGYFR 80 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~ 80 (268)
.|.++.++..+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..+++++. .+|.+..++..
T Consensus 67 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 146 (252)
T 2ho1_A 67 DPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFEN 146 (252)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHH
Confidence 3667889999999999999999999999999999999999999999999999999999999999999 88999999999
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419 81 KGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE 132 (268)
Q Consensus 81 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 132 (268)
+|.++...|++++|+..++++++.+|.++.++..++.++...|++++|....
T Consensus 147 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 198 (252)
T 2ho1_A 147 LGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYY 198 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999997663
No 70
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.81 E-value=8.6e-19 Score=141.49 Aligned_cols=222 Identities=9% Similarity=-0.052 Sum_probs=169.3
Q ss_pred hHh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh--CCCCHHHHHH
Q 024419 4 EAE-EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL--NPQWEKGYFR 80 (268)
Q Consensus 4 ~~~-~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~ 80 (268)
|.+ .++...++..++..|++++|+..++. .+|.+..++..++..+...+++++|++.+++++.. +|+++.+++.
T Consensus 30 p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~ 106 (291)
T 3mkr_A 30 PERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLM 106 (291)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHH
T ss_pred chhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHH
Confidence 444 45667789999999999999988866 25666778888999999999999999999999876 6999999999
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhh
Q 024419 81 KGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEEC 160 (268)
Q Consensus 81 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (268)
+|.++...|++++|+..+++ |+++.++..++.++..+|++++|...... .+...+.. .....
T Consensus 107 la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~--~~~~~p~~-----------~~~~l 168 (291)
T 3mkr_A 107 AASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKK--MQDQDEDA-----------TLTQL 168 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHH--HHHHCTTC-----------HHHHH
T ss_pred HHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHH--HHhhCcCc-----------HHHHH
Confidence 99999999999999999988 89999999999999999999999776321 11111110 00011
Q ss_pred hHHHHHH--HHHHHHHHHHhhhhhhhchhH----------HHHHhhhhhhhHhhhhHHhcCCccccCcc-chhHHHHHHH
Q 024419 161 WKHVFSF--VVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAFESPH-THGSCFQFLR 227 (268)
Q Consensus 161 ~~~~~~~--~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 227 (268)
..+.+.. ..+++++|+..|++++..+|. ++..+|++++|...+++++.++|...... ..+.++...|
T Consensus 169 ~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g 248 (291)
T 3mkr_A 169 ATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLG 248 (291)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 1111111 237899999999999888775 46688999999999999999988763222 2555666666
Q ss_pred HH---HHHHHHHHhhhhCCCCcc
Q 024419 228 QY---ADDSFSSAACLVAPKSII 247 (268)
Q Consensus 228 ~~---a~~~~~ka~~~~~p~~~~ 247 (268)
++ +...+++++ +++|++..
T Consensus 249 ~~~eaa~~~~~~~~-~~~P~~~~ 270 (291)
T 3mkr_A 249 KPPEVTNRYLSQLK-DAHRSHPF 270 (291)
T ss_dssp CCHHHHHHHHHHHH-HHCTTCHH
T ss_pred CCHHHHHHHHHHHH-HhCCCChH
Confidence 55 467889999 99999854
No 71
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.81 E-value=1.8e-18 Score=121.58 Aligned_cols=122 Identities=30% Similarity=0.498 Sum_probs=117.4
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 82 (268)
.|.++..+..+|..++..|++++|+..|++++..+|.+..++..+|.++...|++++|+..+++++..+|+++.+++.+|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 87 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 024419 83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKD 124 (268)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~ 124 (268)
.++...|++++|+..|+++++++|+++.++..++.++...|+
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999877664
No 72
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.81 E-value=7.3e-19 Score=124.29 Aligned_cols=122 Identities=37% Similarity=0.609 Sum_probs=116.9
Q ss_pred CchHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 024419 2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK 81 (268)
Q Consensus 2 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 81 (268)
..|..+.+++.+|..++..|++++|+..|++++..+|.+..++..+|.++...|++++|+..+++++..+|+++.+++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 90 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 90 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 35778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 024419 82 GCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAK 123 (268)
Q Consensus 82 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~ 123 (268)
|.++...|++++|+..|+++++.+|++..++..++.++...+
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999886554
No 73
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.81 E-value=8.7e-18 Score=123.41 Aligned_cols=128 Identities=30% Similarity=0.490 Sum_probs=119.1
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024419 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI 84 (268)
Q Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 84 (268)
..+..+..+|..++..|++++|+..|+++++.+|.+..++..+|.++...|++++|+..+++++..+|.++.+++.+|.+
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH--HHHHHHHHHhHHHH
Q 024419 85 LEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRV--SQLAKDKKRAQEVE 132 (268)
Q Consensus 85 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~--~~~~~~~~~a~~~~ 132 (268)
+...|++++|+..|+++++++|++..++..++.+ +...|++++|....
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 140 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGD 140 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999999999999999999999988555554 66778888886653
No 74
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.81 E-value=3.3e-18 Score=130.08 Aligned_cols=126 Identities=17% Similarity=0.249 Sum_probs=119.3
Q ss_pred hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh----------------HHHHHHHHHHHHcCChHHHHHHHHHH
Q 024419 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP----------------TLFSNRAAAFLHLVKLNKALADAETT 67 (268)
Q Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----------------~~~~~~a~~~~~~~~~~~A~~~~~~a 67 (268)
+..+..+..+|..++..|+|++|+..|++++...|.++ .++.++|.|+..+|++++|+.+++++
T Consensus 35 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 114 (198)
T 2fbn_A 35 VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV 114 (198)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 45678899999999999999999999999999999887 89999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhH
Q 024419 68 ISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQ 129 (268)
Q Consensus 68 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~ 129 (268)
+.++|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++..+++..++.
T Consensus 115 l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 115 LKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988887765
No 75
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.80 E-value=2.4e-19 Score=160.83 Aligned_cols=168 Identities=11% Similarity=-0.008 Sum_probs=145.9
Q ss_pred hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------hcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH
Q 024419 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAI--------KQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWE 75 (268)
Q Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al--------~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~ 75 (268)
|.++.+.+..| ...|++++|++.|++++ +.+|++..+++.+|.++..+|++++|+..|+++++.+|++.
T Consensus 391 p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 467 (681)
T 2pzi_A 391 PTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRW 467 (681)
T ss_dssp TTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCH
T ss_pred CCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchH
Confidence 45555666655 78899999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhc
Q 024419 76 KGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKY 155 (268)
Q Consensus 76 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (268)
.+|+.+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++ +... ...+ .+.+..
T Consensus 468 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~--~~al-----------~~~P~~ 533 (681)
T 2pzi_A 468 RLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFY--QTVW-----------STNDGV 533 (681)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHH--HHHH-----------HHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHH--HHHH-----------HhCCch
Confidence 9999999999999999999999999999999999999999999999998877 5542 1111 123334
Q ss_pred CchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH
Q 024419 156 GAEECWKHVFSFVVETMETAVKSWHETSKVDAK 188 (268)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 188 (268)
...+..++..+...+++++|+..|+++++++|.
T Consensus 534 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~ 566 (681)
T 2pzi_A 534 ISAAFGLARARSAEGDRVGAVRTLDEVPPTSRH 566 (681)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcc
Confidence 445677788888899999999999999999987
No 76
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.80 E-value=3.3e-18 Score=139.10 Aligned_cols=198 Identities=10% Similarity=-0.050 Sum_probs=160.5
Q ss_pred chHhHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHh-cCCCChHHHHHHHHHHHHcCChHHHHHHHHHH
Q 024419 3 AEAEEMSLKDKGNEFFK-------AGNY-------LKAAALYTQAIK-QDPSNPTLFSNRAAAFLHLVKLNKALADAETT 67 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~-------~~~~-------~~A~~~~~~al~-~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 67 (268)
.|.++..|+..|..+.. .|++ ++|+..|++|++ ++|++..+|..+|.++...|++++|+..|+++
T Consensus 46 ~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 125 (308)
T 2ond_A 46 LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRL 125 (308)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 47889999999999874 5885 999999999999 79999999999999999999999999999999
Q ss_pred HhhCCCCHH-HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-HHHHHHhHHHHhhhhhHHHhhhHH
Q 024419 68 ISLNPQWEK-GYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL-AKDKKRAQEVENIRSNVDMVQHLD 145 (268)
Q Consensus 68 l~~~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~ 145 (268)
++++|.++. +|..+|.++...|++++|+..|+++++.+|.+..++...+.+... .|+.++|..+.. ..+..
T Consensus 126 l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~--~al~~----- 198 (308)
T 2ond_A 126 LAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFE--LGLKK----- 198 (308)
T ss_dssp HTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHH--HHHHH-----
T ss_pred HhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH--HHHHh-----
Confidence 999999987 999999999999999999999999999999998888877666433 477777765531 11111
Q ss_pred HHHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhc---hhH-----------HHHHhhhhhhhHhhhhHHhcCCc
Q 024419 146 EFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKV---DAK-----------VYFLLDKEKTDTEKYAPIVNVDK 211 (268)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~-----------~~~~~~~~~~a~~~~~~~~~~~~ 211 (268)
.+.....+...+.+....+++++|+..|++++.. .|+ .....|+.+.+...+++++...|
T Consensus 199 ------~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p 272 (308)
T 2ond_A 199 ------YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp ------HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred ------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence 1122233344444555678899999999999884 443 23467899999999999999988
Q ss_pred cc
Q 024419 212 AF 213 (268)
Q Consensus 212 ~~ 213 (268)
..
T Consensus 273 ~~ 274 (308)
T 2ond_A 273 EE 274 (308)
T ss_dssp TT
T ss_pred cc
Confidence 65
No 77
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.80 E-value=6.3e-18 Score=130.10 Aligned_cols=130 Identities=15% Similarity=0.107 Sum_probs=123.5
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc-CChHHHHHHHHHHHh--hCCCCHHHHH
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHL-VKLNKALADAETTIS--LNPQWEKGYF 79 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~-~~~~~A~~~~~~al~--~~p~~~~~~~ 79 (268)
.|.++.++..+|.++...|++++|+..|++++..+|.+..++..+|.++... |++++|+..+++++. .+|.+..++.
T Consensus 38 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 117 (225)
T 2vq2_A 38 DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANL 117 (225)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHH
T ss_pred CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHH
Confidence 3667889999999999999999999999999999999999999999999999 999999999999999 6777789999
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419 80 RKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE 132 (268)
Q Consensus 80 ~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 132 (268)
.+|.++...|++++|+..++++++.+|+++.++..++.++...|++++|....
T Consensus 118 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 170 (225)
T 2vq2_A 118 NKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYF 170 (225)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999997663
No 78
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.80 E-value=2.4e-18 Score=147.44 Aligned_cols=129 Identities=25% Similarity=0.416 Sum_probs=119.4
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------------hHHHHHHHHHHHHcCChHHHHHHHHHH
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---------------PTLFSNRAAAFLHLVKLNKALADAETT 67 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~a 67 (268)
.|..+..+..+|..++..|+|++|+..|+++++++|.+ ..+|+++|.||.++|++++|+.+|+++
T Consensus 264 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 343 (457)
T 1kt0_A 264 KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA 343 (457)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 36778899999999999999999999999999999998 699999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHH
Q 024419 68 ISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV 131 (268)
Q Consensus 68 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 131 (268)
+.++|+++.+++++|.+|..+|++++|+..|+++++++|++..++..++.++..+++++++...
T Consensus 344 l~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 344 LGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998887543
No 79
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.80 E-value=1.3e-18 Score=121.88 Aligned_cols=104 Identities=14% Similarity=0.114 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024419 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILE 86 (268)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 86 (268)
...++.+|..++..|++++|+..|+++++.+|+++.+|+.+|.++..+|++++|+..|+++++++|+++.+++.+|.++.
T Consensus 17 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 17 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccCHHHHHHHHHHHHhhCCCCHH
Q 024419 87 AMEQYDDALSAFQTALQYNPQSAE 110 (268)
Q Consensus 87 ~~~~~~~A~~~~~~~l~~~p~~~~ 110 (268)
..|++++|+..|+++++++|++..
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-------
T ss_pred HcCCHHHHHHHHHHHHHhCcCCCC
Confidence 999999999999999999998754
No 80
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.79 E-value=2.8e-17 Score=132.57 Aligned_cols=210 Identities=10% Similarity=-0.003 Sum_probs=164.7
Q ss_pred hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 024419 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ--DPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK 81 (268)
Q Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 81 (268)
|....++..++..+...+++++|++.+++++.. +|+++.+++.+|.++...|++++|+..+++ |.++.++..+
T Consensus 62 ~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l 136 (291)
T 3mkr_A 62 APELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMT 136 (291)
T ss_dssp CHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHH
T ss_pred ChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHH
Confidence 446788899999999999999999999999976 699999999999999999999999999998 8999999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH--HHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchh
Q 024419 82 GCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKR--VSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEE 159 (268)
Q Consensus 82 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (268)
|.++..+|++++|+..|+++++.+|++.......+. +....|++++|..... ..+ ...+.....+
T Consensus 137 ~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~--~~l-----------~~~p~~~~~~ 203 (291)
T 3mkr_A 137 VQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQ--EMA-----------DKCSPTLLLL 203 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHH--HHH-----------HHSCCCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHH--HHH-----------HhCCCcHHHH
Confidence 999999999999999999999999998755443332 2223377888866531 111 1122333445
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhchhH----------HHHHhhhhhh-hHhhhhHHhcCCccccCccchhHHHHHHHH
Q 024419 160 CWKHVFSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKT-DTEKYAPIVNVDKAFESPHTHGSCFQFLRQ 228 (268)
Q Consensus 160 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (268)
...+......+++++|...+++++.++|. ++..+|+..+ +...+++++.++|.. ..+.. .
T Consensus 204 ~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~------~~~~d---~ 274 (291)
T 3mkr_A 204 NGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSH------PFIKE---Y 274 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC------HHHHH---H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCC------hHHHH---H
Confidence 66777888899999999999999999986 4557788766 567889999999865 11111 1
Q ss_pred H-HHHHHHHHhhh
Q 024419 229 Y-ADDSFSSAACL 240 (268)
Q Consensus 229 ~-a~~~~~ka~~~ 240 (268)
. ....|++++.+
T Consensus 275 ~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 275 RAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 2 67777777633
No 81
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.79 E-value=3.8e-19 Score=148.87 Aligned_cols=226 Identities=10% Similarity=0.054 Sum_probs=165.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-------CHH
Q 024419 10 LKDKGNEFFKAGNYLKAAALYTQAIKQ------DPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ-------WEK 76 (268)
Q Consensus 10 ~~~~g~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-------~~~ 76 (268)
++.+|..++..|++++|+..|++++++ .+..+.++..+|.+|..+|++++|+..+++++.+.+. .+.
T Consensus 106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 185 (383)
T 3ulq_A 106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQ 185 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHH
Confidence 344999999999999999999999997 2235689999999999999999999999999998443 356
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHH
Q 024419 77 GYFRKGCILEAMEQYDDALSAFQTALQYNPQSA------EVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSE 150 (268)
Q Consensus 77 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 150 (268)
++..+|.++...|++++|+..|++++++.|... .++..+|.++...|++++|..... ..+......
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~--~al~~~~~~------ 257 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFK--RAIAVFEES------ 257 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH--HHHHHHHHT------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHH--HHHHHHHhh------
Confidence 899999999999999999999999999866443 589999999999999999977642 111110000
Q ss_pred hh-hhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH---------------HHHHhhh---hhhhHhhhhHHhcCCc
Q 024419 151 MS-EKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK---------------VYFLLDK---EKTDTEKYAPIVNVDK 211 (268)
Q Consensus 151 ~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---------------~~~~~~~---~~~a~~~~~~~~~~~~ 211 (268)
.. ..........+.++...+++++|+..+++++.+.+. ++...|+ ..+|+..+++.-....
T Consensus 258 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~ 337 (383)
T 3ulq_A 258 NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYAD 337 (383)
T ss_dssp TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHH
Confidence 00 122334556677778889999999999999888543 2223344 5555555554421111
Q ss_pred cccCccchhHHHHHHHHH--HHHHHHHHhhhhCCC
Q 024419 212 AFESPHTHGSCFQFLRQY--ADDSFSSAACLVAPK 244 (268)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~--a~~~~~ka~~~~~p~ 244 (268)
........|.++...|++ |...|++|+ .+..+
T Consensus 338 ~~~~~~~la~~y~~~g~~~~A~~~~~~al-~~~~~ 371 (383)
T 3ulq_A 338 LEDFAIDVAKYYHERKNFQKASAYFLKVE-QVRQL 371 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHTS
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHHHH
Confidence 111112266677777777 999999999 77654
No 82
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.79 E-value=1.1e-17 Score=115.43 Aligned_cols=114 Identities=32% Similarity=0.574 Sum_probs=110.4
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024419 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCIL 85 (268)
Q Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 85 (268)
.+..++.+|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024419 86 EAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVS 119 (268)
Q Consensus 86 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 119 (268)
...|++++|+..++++++.+|+++.++..++.+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 9999999999999999999999999999888774
No 83
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.79 E-value=1.8e-18 Score=139.70 Aligned_cols=167 Identities=14% Similarity=0.087 Sum_probs=129.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------HH
Q 024419 9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPS------NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW------EK 76 (268)
Q Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~ 76 (268)
.+...|.++...|++++|+..|.+++.+.+. .+.++.++|.+|..+|++++|+.+|++++.+.|.. ..
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 118 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4566678888999999999999999998542 26789999999999999999999999999998754 56
Q ss_pred HHHHHHHHHHHc-cCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHH
Q 024419 77 GYFRKGCILEAM-EQYDDALSAFQTALQYNPQS------AEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKS 149 (268)
Q Consensus 77 ~~~~la~~~~~~-~~~~~A~~~~~~~l~~~p~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 149 (268)
++..+|.+|... |++++|+.+|++++++.|.+ ..++..+|.++..+|++++|..... ..+.
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~--~al~---------- 186 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYS--KLIK---------- 186 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH--HHHH----------
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHH--HHHH----------
Confidence 899999999996 99999999999999998865 5678999999999999999976632 1111
Q ss_pred HhhhhcCc-------hhhhHHHHHHHHHHHHHHHHhhhhhhhchhH
Q 024419 150 EMSEKYGA-------EECWKHVFSFVVETMETAVKSWHETSKVDAK 188 (268)
Q Consensus 150 ~~~~~~~~-------~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 188 (268)
+.+.... .+...+..+...+++++|+..|++++.++|.
T Consensus 187 -~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 231 (292)
T 1qqe_A 187 -SSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPN 231 (292)
T ss_dssp -TTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---
T ss_pred -HHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 1111111 2234455566677777777777777777775
No 84
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.79 E-value=1.1e-18 Score=142.04 Aligned_cols=230 Identities=11% Similarity=0.144 Sum_probs=177.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------
Q 024419 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQ------DPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW------ 74 (268)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------ 74 (268)
+..+..+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|+..+++++.+.|..
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 122 (338)
T 3ro2_A 43 SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGE 122 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHH
Confidence 578899999999999999999999999987 45567899999999999999999999999999986643
Q ss_pred HHHHHHHHHHHHHccC--------------------HHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHHHHHHHh
Q 024419 75 EKGYFRKGCILEAMEQ--------------------YDDALSAFQTALQY------NPQSAEVSRKIKRVSQLAKDKKRA 128 (268)
Q Consensus 75 ~~~~~~la~~~~~~~~--------------------~~~A~~~~~~~l~~------~p~~~~~~~~l~~~~~~~~~~~~a 128 (268)
..++..+|.++...|+ +++|+..+++++.+ .|....++..++.++...|++++|
T Consensus 123 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 202 (338)
T 3ro2_A 123 ARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDA 202 (338)
T ss_dssp HHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 4589999999999999 99999999999877 334466899999999999999999
Q ss_pred HHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH----------------HHHH
Q 024419 129 QEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK----------------VYFL 192 (268)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------------~~~~ 192 (268)
..... ..+...+.... ...........+.++...+++++|+..+.+++.+.+. ++..
T Consensus 203 ~~~~~--~a~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 275 (338)
T 3ro2_A 203 VIAHE--QRLLIAKEFGD-----KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL 275 (338)
T ss_dssp HHHHH--HHHHHHHHHTC-----HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHH--HHHHHHHhcCC-----hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Confidence 77642 11111111100 0011224455666777789999999999988877654 4678
Q ss_pred hhhhhhhHhhhhHHhcCCccccC-------ccchhHHHHHHHHH--HHHHHHHHhhhhCCC
Q 024419 193 LDKEKTDTEKYAPIVNVDKAFES-------PHTHGSCFQFLRQY--ADDSFSSAACLVAPK 244 (268)
Q Consensus 193 ~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~--a~~~~~ka~~~~~p~ 244 (268)
.|++++|...+++++.+.+.... ....+.++...|++ |...|++++ .+.++
T Consensus 276 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~-~~~~~ 335 (338)
T 3ro2_A 276 LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL-EISRE 335 (338)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HC---
T ss_pred hcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH-HHHHh
Confidence 89999999999999988554321 12256666777777 999999999 77664
No 85
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.79 E-value=1.8e-19 Score=131.04 Aligned_cols=110 Identities=11% Similarity=-0.020 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 024419 23 YLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTAL 102 (268)
Q Consensus 23 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l 102 (268)
+-.+-..+++++.++|++..+++.+|.++...|++++|+..|++++.++|+++.+|+.+|.++...|++++|+..|++++
T Consensus 18 ~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al 97 (151)
T 3gyz_A 18 AINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAF 97 (151)
T ss_dssp HHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 33344567788889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419 103 QYNPQSAEVSRKIKRVSQLAKDKKRAQEVE 132 (268)
Q Consensus 103 ~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 132 (268)
+++|+++.++..+|.++..+|++++|....
T Consensus 98 ~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~ 127 (151)
T 3gyz_A 98 ALGKNDYTPVFHTGQCQLRLKAPLKAKECF 127 (151)
T ss_dssp HHSSSCCHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhCCCCcHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999999999997663
No 86
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.79 E-value=1.6e-18 Score=155.51 Aligned_cols=129 Identities=14% Similarity=-0.002 Sum_probs=125.2
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 82 (268)
.|.++.+++.+|.++...|++++|+..|+++++.+|++..+|+++|.++..+|++++|+..|+++++++|+++.+++.+|
T Consensus 429 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg 508 (681)
T 2pzi_A 429 FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALA 508 (681)
T ss_dssp CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHH
T ss_pred cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 37788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419 83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE 132 (268)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 132 (268)
.++...|++++ +..|+++++++|++..++..+|.++...|++++|....
T Consensus 509 ~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 509 ATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999 99999999999999999999999999999999997664
No 87
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.79 E-value=1.9e-18 Score=145.46 Aligned_cols=230 Identities=13% Similarity=0.147 Sum_probs=180.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh------CCCC
Q 024419 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQ------DPSNPTLFSNRAAAFLHLVKLNKALADAETTISL------NPQW 74 (268)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p~~ 74 (268)
+.++..+|.+++..|++++|+..|+++++. +|....++..+|.++..+|++++|+..+++++.+ .|..
T Consensus 86 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 165 (411)
T 4a1s_A 86 SAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSE 165 (411)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHH
Confidence 468999999999999999999999999998 5777899999999999999999999999999998 5667
Q ss_pred HHHHHHHHHHHHHccC-----------------HHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHHHHHHHhHHH
Q 024419 75 EKGYFRKGCILEAMEQ-----------------YDDALSAFQTALQYN------PQSAEVSRKIKRVSQLAKDKKRAQEV 131 (268)
Q Consensus 75 ~~~~~~la~~~~~~~~-----------------~~~A~~~~~~~l~~~------p~~~~~~~~l~~~~~~~~~~~~a~~~ 131 (268)
..++..+|.++...|+ +++|+..+++++++. |....++..+|.++...|++++|...
T Consensus 166 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 245 (411)
T 4a1s_A 166 GRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEH 245 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 8899999999999999 999999999998874 33456899999999999999999776
Q ss_pred HhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH----------------HHHHhhh
Q 024419 132 ENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK----------------VYFLLDK 195 (268)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------------~~~~~~~ 195 (268)
.. ..+...+.... ...........+.++...+++++|+..+.+++.+.+. ++...|+
T Consensus 246 ~~--~al~~~~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 318 (411)
T 4a1s_A 246 HQ--ERLRIAREFGD-----RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHE 318 (411)
T ss_dssp HH--HHHHHHHHHTC-----HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HH--HHHHHHHhcCC-----cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Confidence 42 11111111100 0001124455666677788889999999888877763 4678899
Q ss_pred hhhhHhhhhHHhcCCccccC-------ccchhHHHHHHHHH--HHHHHHHHhhhhCCC
Q 024419 196 EKTDTEKYAPIVNVDKAFES-------PHTHGSCFQFLRQY--ADDSFSSAACLVAPK 244 (268)
Q Consensus 196 ~~~a~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~--a~~~~~ka~~~~~p~ 244 (268)
+++|...+++++.+.+.... ....+.++...|++ |...|++|+ .+.+.
T Consensus 319 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~~~ 375 (411)
T 4a1s_A 319 FNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL-QLAXX 375 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCCH
T ss_pred HHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH-HHHhh
Confidence 99999999999988554321 12255666666666 999999999 87664
No 88
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.78 E-value=4.3e-18 Score=142.54 Aligned_cols=231 Identities=11% Similarity=0.140 Sum_probs=179.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------
Q 024419 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQ------DPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW------ 74 (268)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------ 74 (268)
+..+..+|.+++..|++++|+.++++++.. .|..+.++..+|.++..+|++++|+..+++++.+.|..
T Consensus 47 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 126 (406)
T 3sf4_A 47 SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGE 126 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccch
Confidence 578999999999999999999999999887 34557899999999999999999999999999987653
Q ss_pred HHHHHHHHHHHHHccC--------------------HHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHHHHHHHh
Q 024419 75 EKGYFRKGCILEAMEQ--------------------YDDALSAFQTALQY------NPQSAEVSRKIKRVSQLAKDKKRA 128 (268)
Q Consensus 75 ~~~~~~la~~~~~~~~--------------------~~~A~~~~~~~l~~------~p~~~~~~~~l~~~~~~~~~~~~a 128 (268)
..++..+|.++...|+ +++|+..+++++.+ .|....++..+|.++...|++++|
T Consensus 127 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 206 (406)
T 3sf4_A 127 ARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDA 206 (406)
T ss_dssp HHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHH
T ss_pred HHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHH
Confidence 5689999999999999 99999999999987 344467899999999999999999
Q ss_pred HHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH----------------HHHH
Q 024419 129 QEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK----------------VYFL 192 (268)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------------~~~~ 192 (268)
..... ..+...+.... ...........+.++...+++++|+..+.+++.+.|. ++..
T Consensus 207 ~~~~~--~al~~~~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 279 (406)
T 3sf4_A 207 VIAHE--QRLLIAKEFGD-----KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL 279 (406)
T ss_dssp HHHHH--HHHHHHHHTTC-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHH--HHHHHHHhcCC-----cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHH
Confidence 77632 11111111000 0011124555666777788999999999988877664 4668
Q ss_pred hhhhhhhHhhhhHHhcCCccccC-------ccchhHHHHHHHHH--HHHHHHHHhhhhCCCC
Q 024419 193 LDKEKTDTEKYAPIVNVDKAFES-------PHTHGSCFQFLRQY--ADDSFSSAACLVAPKS 245 (268)
Q Consensus 193 ~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~--a~~~~~ka~~~~~p~~ 245 (268)
.|++++|...++.++.+.+.... ....+.++...|++ |...|++++ .+.+..
T Consensus 280 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~~~~ 340 (406)
T 3sf4_A 280 LQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL-EISREV 340 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHHHHT
T ss_pred hCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHh
Confidence 89999999999999988544321 12256666777777 999999999 775543
No 89
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.78 E-value=2.4e-17 Score=131.37 Aligned_cols=189 Identities=15% Similarity=0.159 Sum_probs=158.7
Q ss_pred hHhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCCCH
Q 024419 4 EAEEMSLKDKGNEFFK----AGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLH----LVKLNKALADAETTISLNPQWE 75 (268)
Q Consensus 4 ~~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~ 75 (268)
|.++.+++.+|.++.. .+++++|+..|+++++.+ ++.+++.+|.+|.. .+++++|+..|++++..+ ++
T Consensus 35 ~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~ 110 (273)
T 1ouv_A 35 LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YA 110 (273)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CH
T ss_pred CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--Cc
Confidence 5567889999999999 999999999999999985 89999999999999 999999999999999984 89
Q ss_pred HHHHHHHHHHHH----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----HHHHHHhHHHHhhhhhHHHhhhHHHH
Q 024419 76 KGYFRKGCILEA----MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL----AKDKKRAQEVENIRSNVDMVQHLDEF 147 (268)
Q Consensus 76 ~~~~~la~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 147 (268)
.+++.+|.+|.. .+++++|+..|+++++.+ ++.++..+|.++.. .+++++|.......
T Consensus 111 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a------------ 176 (273)
T 1ouv_A 111 EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKA------------ 176 (273)
T ss_dssp HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH------------
T ss_pred cHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH------------
Confidence 999999999999 999999999999999976 68899999999988 88888887663211
Q ss_pred HHHhhhhcCchhhhHHHHHHH----HHHHHHHHHhhhhhhhchhH--------HHHH----hhhhhhhHhhhhHHhcCCc
Q 024419 148 KSEMSEKYGAEECWKHVFSFV----VETMETAVKSWHETSKVDAK--------VYFL----LDKEKTDTEKYAPIVNVDK 211 (268)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~--------~~~~----~~~~~~a~~~~~~~~~~~~ 211 (268)
+...........+.++.. .+++++|+..|+++++..|. +|.. .++.++|+..|++++.++|
T Consensus 177 ---~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 177 ---CDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp ---HHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred ---HHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 111122334455556666 78999999999999887764 3555 7899999999999999877
Q ss_pred cc
Q 024419 212 AF 213 (268)
Q Consensus 212 ~~ 213 (268)
..
T Consensus 254 ~~ 255 (273)
T 1ouv_A 254 KG 255 (273)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.78 E-value=1.2e-17 Score=132.46 Aligned_cols=118 Identities=17% Similarity=0.207 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHH--------cCChHHHHHHHHHHHhhCCCCH
Q 024419 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLH--------LVKLNKALADAETTISLNPQWE 75 (268)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~--------~~~~~~A~~~~~~al~~~p~~~ 75 (268)
+.+++.+|.+++..|++++|+..|+++++.+|++ ..+++.+|.++.. +|++++|+..|++++..+|++.
T Consensus 52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 131 (261)
T 3qky_A 52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHE 131 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCch
Confidence 8899999999999999999999999999998865 5789999999999 9999999999999999999986
Q ss_pred HHH-----------------HHHHHHHHHccCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHHHH
Q 024419 76 KGY-----------------FRKGCILEAMEQYDDALSAFQTALQYNPQ---SAEVSRKIKRVSQLAKD 124 (268)
Q Consensus 76 ~~~-----------------~~la~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~l~~~~~~~~~ 124 (268)
.+. +.+|.+|...|++++|+..|+++++.+|+ .+.++..+|.++..+|.
T Consensus 132 ~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~ 200 (261)
T 3qky_A 132 LVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAE 200 (261)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcc
Confidence 665 88999999999999999999999999998 46789999999877743
No 91
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.78 E-value=1.7e-17 Score=127.31 Aligned_cols=161 Identities=11% Similarity=0.118 Sum_probs=117.8
Q ss_pred CChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH----------------HHHHHHHccCHHHHHHHHHHHH
Q 024419 39 SNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFR----------------KGCILEAMEQYDDALSAFQTAL 102 (268)
Q Consensus 39 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~----------------la~~~~~~~~~~~A~~~~~~~l 102 (268)
.++..++..|.++...|++++|+..|++++..+|+++.+++. +|.++...|++++|+..|++++
T Consensus 2 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 81 (208)
T 3urz_A 2 QSVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL 81 (208)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 357788999999999999999999999999999999999999 9999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHHHHHH--HHHHHHHhhh
Q 024419 103 QYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVE--TMETAVKSWH 180 (268)
Q Consensus 103 ~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~ 180 (268)
+++|+++.++..+|.++...|++++|..... ..+. +.+.....+...|.++...+ ....+...+.
T Consensus 82 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~--~al~-----------~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~ 148 (208)
T 3urz_A 82 QKAPNNVDCLEACAEMQVCRGQEKDALRMYE--KILQ-----------LEADNLAANIFLGNYYYLTAEQEKKKLETDYK 148 (208)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH--HHHH-----------HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHH--HHHH-----------cCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 9999999999999999999999999976631 1111 22233334445555444333 3444556666
Q ss_pred hhhhchhH---------HHHHhhhhhhhHhhhhHHhcCCcc
Q 024419 181 ETSKVDAK---------VYFLLDKEKTDTEKYAPIVNVDKA 212 (268)
Q Consensus 181 ~~~~~~~~---------~~~~~~~~~~a~~~~~~~~~~~~~ 212 (268)
+++...|. .+..+|++++|+..|++++.++|.
T Consensus 149 ~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 149 KLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 65554443 223345555555555555555553
No 92
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.78 E-value=6.6e-19 Score=131.53 Aligned_cols=129 Identities=12% Similarity=0.027 Sum_probs=112.9
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 82 (268)
+|...+.++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++..+| ++..+..++
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~ 80 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIA 80 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHH
Confidence 5677778999999999999999999999999999999999999999999999999999999999999999 887776666
Q ss_pred HHHH-HccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419 83 CILE-AMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE 132 (268)
Q Consensus 83 ~~~~-~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 132 (268)
.+.. ..++..+|+..++++++.+|+++.++..+|.++...|++++|....
T Consensus 81 ~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~ 131 (176)
T 2r5s_A 81 KLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELL 131 (176)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHH
Confidence 5533 3344456899999999999999999999999999999999997663
No 93
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.78 E-value=3.4e-18 Score=120.58 Aligned_cols=100 Identities=11% Similarity=0.147 Sum_probs=94.7
Q ss_pred HHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH
Q 024419 32 QAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111 (268)
Q Consensus 32 ~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 111 (268)
++..++|+.+.++.++|.++++.|+|++|+..|+++++++|.++.+|+.+|.++..+|++++|+..|+++++++|+++.+
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a 83 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG 83 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence 45568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHH
Q 024419 112 SRKIKRVSQLAKDKKRAQEV 131 (268)
Q Consensus 112 ~~~l~~~~~~~~~~~~a~~~ 131 (268)
+..+|.++..+|++++|...
T Consensus 84 ~~~lg~~~~~~~~~~~A~~~ 103 (126)
T 4gco_A 84 YIRKAACLVAMREWSKAQRA 103 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999765
No 94
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.77 E-value=3.8e-17 Score=113.77 Aligned_cols=117 Identities=23% Similarity=0.453 Sum_probs=112.4
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024419 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCIL 85 (268)
Q Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 85 (268)
.+..+..+|..+...|++++|+..|++++..+|.+..++..+|.++...|++++|+..+++++..+|.++.++..+|.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 024419 86 EAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA 122 (268)
Q Consensus 86 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 122 (268)
...|++++|+..++++++.+|+++.++..++.++...
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999887543
No 95
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.77 E-value=5.8e-18 Score=136.38 Aligned_cols=167 Identities=13% Similarity=0.054 Sum_probs=138.8
Q ss_pred hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024419 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC 83 (268)
Q Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 83 (268)
|.+.+.++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++..+|+....+...+.
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI 193 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence 56778899999999999999999999999999999999999999999999999999999999999999988877888888
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhc--Cchhhh
Q 024419 84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKY--GAEECW 161 (268)
Q Consensus 84 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 161 (268)
.+...++.++|+..|++++..+|+++.++..+|.++...|++++|..... ..+. ..+.. ......
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~--~~l~-----------~~p~~~~~~a~~~ 260 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLF--GHLR-----------XDLTAADGQTRXT 260 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH--HHHH-----------HCTTGGGGHHHHH
T ss_pred HHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHH--HHHh-----------cccccccchHHHH
Confidence 89999999999999999999999999999999999999999999976531 1111 11122 223344
Q ss_pred HHHHHHHHHHHHHHHHhhhhhh
Q 024419 162 KHVFSFVVETMETAVKSWHETS 183 (268)
Q Consensus 162 ~~~~~~~~~~~~~A~~~~~~~~ 183 (268)
.+.+....++.++|+..|++++
T Consensus 261 l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 261 FQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCcHHHHHHHHH
Confidence 4444555566666666666554
No 96
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=2.3e-17 Score=118.73 Aligned_cols=117 Identities=30% Similarity=0.449 Sum_probs=111.7
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYF 79 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 79 (268)
.|.++..++.+|..++..|++++|+..|+++++.+|++ ..++..+|.++...|++++|+..+++++..+|+++.+++
T Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 35678999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024419 80 RKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVS 119 (268)
Q Consensus 80 ~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 119 (268)
.+|.++...|++++|+..|+++++++|++..++..++.+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 9999999999999999999999999999999988887764
No 97
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.76 E-value=2.8e-17 Score=115.51 Aligned_cols=120 Identities=25% Similarity=0.381 Sum_probs=112.5
Q ss_pred hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-------HH
Q 024419 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW-------EK 76 (268)
Q Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-------~~ 76 (268)
|..+..+..+|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|.+ +.
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 80 (131)
T 1elr_A 1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK 80 (131)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999998877 89
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 024419 77 GYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKD 124 (268)
Q Consensus 77 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~ 124 (268)
+++.+|.++...|++++|+..|+++++..| ++.....++.+....+.
T Consensus 81 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 81 AYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE 127 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 68888888888766554
No 98
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.76 E-value=3.1e-17 Score=115.57 Aligned_cols=113 Identities=15% Similarity=0.164 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh---HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHH
Q 024419 8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP---TLFSNRAAAFLHLVKLNKALADAETTISLNPQW---EKGYFRK 81 (268)
Q Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l 81 (268)
++++.+|..++..|++++|+..|+++++.+|++. .+++.+|.++...|++++|+..|++++..+|++ +.+++.+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 4678999999999999999999999999999998 899999999999999999999999999999999 8999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024419 82 GCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQ 120 (268)
Q Consensus 82 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 120 (268)
|.++...|++++|+..|+++++.+|+++.+......+..
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~ 121 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQS 121 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHH
Confidence 999999999999999999999999999887766655543
No 99
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.76 E-value=5.9e-17 Score=120.69 Aligned_cols=130 Identities=18% Similarity=0.247 Sum_probs=124.9
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 82 (268)
.|.++.++..+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+..+++++..+|.++.++..+|
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 117 (186)
T 3as5_A 38 DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLG 117 (186)
T ss_dssp TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419 83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE 132 (268)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 132 (268)
.++...|++++|+..++++++.+|+++.++..++.++...|++++|....
T Consensus 118 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 118 VALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999997663
No 100
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.76 E-value=3.3e-17 Score=136.52 Aligned_cols=127 Identities=23% Similarity=0.384 Sum_probs=120.3
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----------------cCCCChHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 024419 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIK----------------QDPSNPTLFSNRAAAFLHLVKLNKALADAETTI 68 (268)
Q Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~----------------~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 68 (268)
..+..+..+|..++..|+|++|+..|+++++ .+|.+..++.++|.|+..+|++++|+.++++++
T Consensus 221 ~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 300 (370)
T 1ihg_A 221 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL 300 (370)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 3467789999999999999999999999999 788889999999999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHH
Q 024419 69 SLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV 131 (268)
Q Consensus 69 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 131 (268)
+++|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++..+++.+++...
T Consensus 301 ~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 301 EIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999888877543
No 101
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.75 E-value=1.6e-18 Score=149.26 Aligned_cols=130 Identities=30% Similarity=0.481 Sum_probs=121.0
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 82 (268)
.+..+.++..+|..++..|++++|++.|+++++.+|++..++.++|.++..+|++++|+..++++++++|+++.+++.+|
T Consensus 2 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 81 (477)
T 1wao_1 2 ALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRA 81 (477)
T ss_dssp CHHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 46778888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH--HHHHHHHHHhHHHH
Q 024419 83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRV--SQLAKDKKRAQEVE 132 (268)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~--~~~~~~~~~a~~~~ 132 (268)
.++..+|++++|+..|+++++++|++..++..++.+ +...+++++|.+..
T Consensus 82 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~ 133 (477)
T 1wao_1 82 ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGD 133 (477)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC----
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999988 77779999997764
No 102
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.75 E-value=8.9e-17 Score=113.28 Aligned_cols=124 Identities=23% Similarity=0.405 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 024419 8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEA 87 (268)
Q Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 87 (268)
.++..+|..+...|++++|+..++++++.+|.+..++..+|.++...|++++|+..+++++..+|.++.++..+|.++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHH
Q 024419 88 MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV 131 (268)
Q Consensus 88 ~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 131 (268)
.|++++|+..+++++...|.++.++..++.++...|++++|...
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 125 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEY 125 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHH
Confidence 99999999999999999999999999999999999999998665
No 103
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.75 E-value=4.9e-17 Score=129.27 Aligned_cols=130 Identities=14% Similarity=0.148 Sum_probs=120.4
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh----
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ--------DPSNPTLFSNRAAAFLHLVKLNKALADAETTISL---- 70 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---- 70 (268)
.|..+.++..+|.++...|++++|+..|++++.. +|....++..+|.++...|++++|+..|++++.+
T Consensus 39 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 118 (283)
T 3edt_B 39 HPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 118 (283)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 4778899999999999999999999999999987 4666789999999999999999999999999998
Q ss_pred ----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419 71 ----NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQY--------NPQSAEVSRKIKRVSQLAKDKKRAQEVE 132 (268)
Q Consensus 71 ----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 132 (268)
+|....++..+|.++...|++++|+..+++++++ +|....++..+|.++...|++++|....
T Consensus 119 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 192 (283)
T 3edt_B 119 LGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLY 192 (283)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5777899999999999999999999999999999 7777889999999999999999997763
No 104
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.75 E-value=1.7e-17 Score=133.91 Aligned_cols=188 Identities=13% Similarity=-0.011 Sum_probs=140.1
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------hHHHHHHHHHHHHc-CChHHHHHHHHHHHhhCCCC---
Q 024419 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN------PTLFSNRAAAFLHL-VKLNKALADAETTISLNPQW--- 74 (268)
Q Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~-~~~~~A~~~~~~al~~~p~~--- 74 (268)
..+.++..+|.++...|++++|+.+|++++++.|.. ..++.++|.+|... |++++|+.+|++++.+.|..
T Consensus 75 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~ 154 (292)
T 1qqe_A 75 EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV 154 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh
Confidence 347899999999999999999999999999998754 46899999999996 99999999999999998864
Q ss_pred ---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH-------HHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhH
Q 024419 75 ---EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE-------VSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHL 144 (268)
Q Consensus 75 ---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 144 (268)
..++..+|.++..+|++++|+..|++++++.|++.. ++..+|.++...|++++|...... .+...+..
T Consensus 155 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~--al~l~p~~ 232 (292)
T 1qqe_A 155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQE--GQSEDPNF 232 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHG--GGCC----
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHH--HHhhCCCC
Confidence 567999999999999999999999999999998754 678999999999999999766421 12111111
Q ss_pred HHHHHHhhhhcCchhhhHHHHH--HHHHHHHHHHHhhhhhhhchhHHHHHhhhhhhhH
Q 024419 145 DEFKSEMSEKYGAEECWKHVFS--FVVETMETAVKSWHETSKVDAKVYFLLDKEKTDT 200 (268)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~a~ 200 (268)
..... ........... ...+.+++|+..|.+++.++|..-..+-+..+.+
T Consensus 233 ~~~~~------~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 233 ADSRE------SNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKESI 284 (292)
T ss_dssp -----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred CCcHH------HHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence 10000 00000000000 1235688888888888888887555555555444
No 105
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.74 E-value=4.7e-17 Score=136.10 Aligned_cols=199 Identities=14% Similarity=0.127 Sum_probs=150.5
Q ss_pred hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC--
Q 024419 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN-------PTLFSNRAAAFLHLVKLNKALADAETTISLNPQW-- 74 (268)
Q Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-- 74 (268)
+..+.++..+|.++...|++++|+.++++++++.+.. +.++.++|.+|..+|++++|+..|++++.+.|..
T Consensus 140 ~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 219 (383)
T 3ulq_A 140 IEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ 219 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC
Confidence 4567899999999999999999999999999985443 4689999999999999999999999999886543
Q ss_pred ----HHHHHHHHHHHHHccCHHHHHHHHHHHHh-----hC-CCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhH
Q 024419 75 ----EKGYFRKGCILEAMEQYDDALSAFQTALQ-----YN-PQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHL 144 (268)
Q Consensus 75 ----~~~~~~la~~~~~~~~~~~A~~~~~~~l~-----~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 144 (268)
..++.++|.+|...|++++|+..|+++++ .+ |..+.++..+|.++...|++++|....... +......
T Consensus 220 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a--l~~~~~~ 297 (383)
T 3ulq_A 220 PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKG--MAYSQKA 297 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHH--HHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHH--HHHHHHc
Confidence 36899999999999999999999999999 46 888899999999999999999997764321 1111110
Q ss_pred H--HHHHHhhhhcCchhhhHHHHHHHH---HHHHHHHHhhhhhhhchh----------HHHHHhhhhhhhHhhhhHHhcC
Q 024419 145 D--EFKSEMSEKYGAEECWKHVFSFVV---ETMETAVKSWHETSKVDA----------KVYFLLDKEKTDTEKYAPIVNV 209 (268)
Q Consensus 145 ~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~A~~~~~~~~~~~~----------~~~~~~~~~~~a~~~~~~~~~~ 209 (268)
. ..... . ...+.++... ..+++|+..+++.. ..| .+|...|++++|...+++++.+
T Consensus 298 ~~~~~~~~-~-------~~l~~~~~~~~~~~~~~~al~~~~~~~-~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 298 GDVIYLSE-F-------EFLKSLYLSGPDEEAIQGFFDFLESKM-LYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp TCHHHHHH-H-------HHHHHHHTSSCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHH-H-------HHHHHHHhCCCcHHHHHHHHHHHHHCc-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 0 00000 0 0111111112 33677777776652 222 2678899999999999999988
Q ss_pred Cccc
Q 024419 210 DKAF 213 (268)
Q Consensus 210 ~~~~ 213 (268)
....
T Consensus 369 ~~~i 372 (383)
T 3ulq_A 369 RQLI 372 (383)
T ss_dssp HTSC
T ss_pred HHHh
Confidence 5443
No 106
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.74 E-value=2.2e-17 Score=119.71 Aligned_cols=106 Identities=10% Similarity=0.003 Sum_probs=101.4
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 024419 26 AAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYN 105 (268)
Q Consensus 26 A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~ 105 (268)
+-..|++++..+|++..+++.+|.++...|++++|+..|++++.++|+++.+|+.+|.++...|++++|+..|++++.++
T Consensus 6 ~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 6 GGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhHHH
Q 024419 106 PQSAEVSRKIKRVSQLAKDKKRAQEV 131 (268)
Q Consensus 106 p~~~~~~~~l~~~~~~~~~~~~a~~~ 131 (268)
|+++.++..+|.++...|++++|...
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~ 111 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESG 111 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999999765
No 107
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.74 E-value=3.4e-17 Score=143.97 Aligned_cols=127 Identities=11% Similarity=0.083 Sum_probs=78.7
Q ss_pred hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024419 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC 83 (268)
Q Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 83 (268)
|.++.++..+|.++...|++++|++.|+++++.+|++..++.++|.++..+|++++|+..|+++++++|++..++..+|.
T Consensus 20 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 99 (568)
T 2vsy_A 20 PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGH 99 (568)
T ss_dssp -CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 44555666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH---HHHHHhHH
Q 024419 84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA---KDKKRAQE 130 (268)
Q Consensus 84 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~---~~~~~a~~ 130 (268)
++...|++++|++.|+++++++|++..++..++.++... |++++|.+
T Consensus 100 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~ 149 (568)
T 2vsy_A 100 ALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSA 149 (568)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHH
Confidence 666666666666666666666666666666666666555 55555543
No 108
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.73 E-value=1.6e-16 Score=121.80 Aligned_cols=125 Identities=21% Similarity=0.259 Sum_probs=117.3
Q ss_pred hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024419 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC 83 (268)
Q Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 83 (268)
..++..++.+|..++..|++++|+..|++++ +| ++.+++++|.++...|++++|+..|++++.++|+++.+++.+|.
T Consensus 3 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~ 79 (213)
T 1hh8_A 3 LVEAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGM 79 (213)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 3566788999999999999999999999996 44 78999999999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCH----------------HHHHHHHHHHHHHHHHHHhHHH
Q 024419 84 ILEAMEQYDDALSAFQTALQYNPQSA----------------EVSRKIKRVSQLAKDKKRAQEV 131 (268)
Q Consensus 84 ~~~~~~~~~~A~~~~~~~l~~~p~~~----------------~~~~~l~~~~~~~~~~~~a~~~ 131 (268)
++...|++++|+..|++++++.|++. .++..+|.++...|++++|...
T Consensus 80 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 143 (213)
T 1hh8_A 80 LYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQ 143 (213)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHH
Confidence 99999999999999999999998877 9999999999999999999765
No 109
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.73 E-value=1.5e-16 Score=139.98 Aligned_cols=113 Identities=13% Similarity=0.104 Sum_probs=88.7
Q ss_pred cCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 024419 20 AGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQ 99 (268)
Q Consensus 20 ~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 99 (268)
.|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++++|++..++..+|.++...|++++|+..|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419 100 TALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE 132 (268)
Q Consensus 100 ~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 132 (268)
++++++|+++.++..+|.++...|++++|.+..
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 114 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAY 114 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999999999999997664
No 110
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.72 E-value=2.7e-17 Score=137.44 Aligned_cols=225 Identities=14% Similarity=0.084 Sum_probs=161.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------CChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-------CH
Q 024419 9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDP------SNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ-------WE 75 (268)
Q Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-------~~ 75 (268)
.++.+|..++..|++++|+..|++++++.+ ..+.++.++|.+|..+|++++|+..+++++.+.+. .+
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 567899999999999999999999998743 34678999999999999999999999999987543 25
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHH
Q 024419 76 KGYFRKGCILEAMEQYDDALSAFQTALQYNPQ------SAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKS 149 (268)
Q Consensus 76 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 149 (268)
.++..+|.++...|++++|++.|++++++.+. ...++..+|.++...|++++|..... ..+.....
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~--~al~~~~~------ 254 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ--KAAKVSRE------ 254 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH--HHHHHHHH------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH--HHHHHHHh------
Confidence 67889999999999999999999999987432 24688999999999999999977642 11111110
Q ss_pred HhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH---------------HHHHhhh---hhhhHhhhhHHhcCCc
Q 024419 150 EMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK---------------VYFLLDK---EKTDTEKYAPIVNVDK 211 (268)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---------------~~~~~~~---~~~a~~~~~~~~~~~~ 211 (268)
...+.........+.++...+++++|+..+++++.+.+. .+...++ ..+|+..++.......
T Consensus 255 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~ 334 (378)
T 3q15_A 255 KVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAY 334 (378)
T ss_dssp HCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHH
T ss_pred hCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhH
Confidence 011112334556677788889999999999999887543 1222333 4555555444211111
Q ss_pred cccCccchhHHHHHHHHH--HHHHHHHHhhhhC
Q 024419 212 AFESPHTHGSCFQFLRQY--ADDSFSSAACLVA 242 (268)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~--a~~~~~ka~~~~~ 242 (268)
........|.++...+++ |.+.|++++ ++.
T Consensus 335 ~~~~~~~la~~y~~~g~~~~A~~~~~~al-~~~ 366 (378)
T 3q15_A 335 IEACARSAAAVFESSCHFEQAAAFYRKVL-KAQ 366 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHH
Confidence 111112256667777777 999999998 653
No 111
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.72 E-value=2.5e-16 Score=117.32 Aligned_cols=108 Identities=13% Similarity=0.179 Sum_probs=66.9
Q ss_pred hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHH-HHHcCCh--HHHHHHHHHHHhhCCCCHHHHHH
Q 024419 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAA-FLHLVKL--NKALADAETTISLNPQWEKGYFR 80 (268)
Q Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~-~~~~~~~--~~A~~~~~~al~~~p~~~~~~~~ 80 (268)
|.++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.+ +...|++ ++|+..+++++..+|+++.+++.
T Consensus 41 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 120 (177)
T 2e2e_A 41 PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALML 120 (177)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHH
Confidence 44555666666666666666666666666666666666666666666 5566665 66666666666666666666666
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCCHHH
Q 024419 81 KGCILEAMEQYDDALSAFQTALQYNPQSAEV 111 (268)
Q Consensus 81 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 111 (268)
+|.++...|++++|+..|+++++++|+++..
T Consensus 121 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 151 (177)
T 2e2e_A 121 LASDAFMQANYAQAIELWQKVMDLNSPRINR 151 (177)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTSCH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhhCCCCccH
Confidence 6666666666666666666666666655443
No 112
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.72 E-value=3.9e-17 Score=111.63 Aligned_cols=107 Identities=18% Similarity=0.185 Sum_probs=103.0
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--CHHHHHH
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ--WEKGYFR 80 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~ 80 (268)
.|.++..+..+|.+++..|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++.+|. +..++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHc-cCHHHHHHHHHHHHhhCCCCH
Q 024419 81 KGCILEAM-EQYDDALSAFQTALQYNPQSA 109 (268)
Q Consensus 81 la~~~~~~-~~~~~A~~~~~~~l~~~p~~~ 109 (268)
+|.++... |++++|++.+++++..+|+++
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 99999999 999999999999999999764
No 113
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.72 E-value=5.4e-17 Score=116.84 Aligned_cols=99 Identities=14% Similarity=0.258 Sum_probs=90.4
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCh----------HHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 024419 18 FKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKL----------NKALADAETTISLNPQWEKGYFRKGCILEA 87 (268)
Q Consensus 18 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 87 (268)
-+.+.|++|+..++++++++|+++.+|+++|.++...+++ ++|+..|+++|+++|++..+|+++|.+|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3456799999999999999999999999999999999875 599999999999999999999999999998
Q ss_pred cc-----------CHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419 88 ME-----------QYDDALSAFQTALQYNPQSAEVSRKIK 116 (268)
Q Consensus 88 ~~-----------~~~~A~~~~~~~l~~~p~~~~~~~~l~ 116 (268)
+| ++++|+++|+++++++|++......+.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~ 132 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLE 132 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 85 899999999999999999976655443
No 114
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.72 E-value=5.8e-16 Score=124.98 Aligned_cols=227 Identities=14% Similarity=0.091 Sum_probs=162.4
Q ss_pred hHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCChHHHHHHHHHHHHcC--ChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419 6 EEMSLKDKGNEFFKAGNY-LKAAALYTQAIKQDPSNPTLFSNRAAAFLHLV--KLNKALADAETTISLNPQWEKGYFRKG 82 (268)
Q Consensus 6 ~~~~~~~~g~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~la 82 (268)
+-.............|.+ ++|+..+.++|.++|.+..+|+.++.++..++ .+++++..+.+++..+|++..+|..++
T Consensus 31 ~y~~~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~ 110 (306)
T 3dra_A 31 DYKQIMGLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQ 110 (306)
T ss_dssp HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHH
Confidence 334555666666777777 68999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHH----HHc---cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH--HhHHHHhhhhhHHHhhhHHHHHHHhhh
Q 024419 83 CIL----EAM---EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKK--RAQEVENIRSNVDMVQHLDEFKSEMSE 153 (268)
Q Consensus 83 ~~~----~~~---~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (268)
.++ ... +++++++..+.++++.+|.|..+|...+.+....+.++ ++.+.. ...+.. ..
T Consensus 111 ~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~--~~~i~~-----------d~ 177 (306)
T 3dra_A 111 LIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFV--DKVIDT-----------DL 177 (306)
T ss_dssp HHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHH--HHHHHH-----------CT
T ss_pred HHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHH--HHHHHh-----------CC
Confidence 999 777 78999999999999999999999999999998888766 443331 111111 11
Q ss_pred hcCchhhhHHHHHHHHH------HHHHHHHhhhhhhhchhH----------HHHHhhhhhh-hHhhhhHHhcCCcccc-C
Q 024419 154 KYGAEECWKHVFSFVVE------TMETAVKSWHETSKVDAK----------VYFLLDKEKT-DTEKYAPIVNVDKAFE-S 215 (268)
Q Consensus 154 ~~~~~~~~~~~~~~~~~------~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~-a~~~~~~~~~~~~~~~-~ 215 (268)
....++..++.+....+ .++++++.+.+++..+|. ++...|+... ....+.+++.+++... +
T Consensus 178 ~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s 257 (306)
T 3dra_A 178 KNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTS 257 (306)
T ss_dssp TCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESC
T ss_pred CCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCC
Confidence 11222233333222222 388999999999999997 2334444333 4445566666541100 0
Q ss_pred cc---chhHHHHHHHHH--HHHHHHHHhhh-hCCCCc
Q 024419 216 PH---THGSCFQFLRQY--ADDSFSSAACL-VAPKSI 246 (268)
Q Consensus 216 ~~---~~~~~~~~~~~~--a~~~~~ka~~~-~~p~~~ 246 (268)
.. ..+.++...+.+ |.+.|++++ . +||-..
T Consensus 258 ~~al~~la~~~~~~~~~~~A~~~~~~l~-~~~Dpir~ 293 (306)
T 3dra_A 258 SFALETLAKIYTQQKKYNESRTVYDLLK-SKYNPIRS 293 (306)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTTCGGGH
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHH-hccChHHH
Confidence 01 133333334444 999999999 6 899753
No 115
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.72 E-value=1.4e-16 Score=114.54 Aligned_cols=105 Identities=9% Similarity=-0.008 Sum_probs=98.2
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 024419 28 ALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQ 107 (268)
Q Consensus 28 ~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~ 107 (268)
..|++++..+|++...++.+|.++...|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|++++.++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 56788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419 108 SAEVSRKIKRVSQLAKDKKRAQEVE 132 (268)
Q Consensus 108 ~~~~~~~l~~~~~~~~~~~~a~~~~ 132 (268)
++.++..+|.++...|++++|....
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~ 109 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGDLDGAESGF 109 (142)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999997663
No 116
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.70 E-value=1.9e-16 Score=127.72 Aligned_cols=130 Identities=16% Similarity=0.180 Sum_probs=119.1
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhC---
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ--------DPSNPTLFSNRAAAFLHLVKLNKALADAETTISLN--- 71 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--- 71 (268)
.|..+.++..+|.++...|++++|+.++++++.. +|....++..+|.++...|++++|+..+++++.+.
T Consensus 65 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 144 (311)
T 3nf1_A 65 HPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 144 (311)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh
Confidence 5677889999999999999999999999999987 45667899999999999999999999999999884
Q ss_pred -----CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419 72 -----PQWEKGYFRKGCILEAMEQYDDALSAFQTALQY--------NPQSAEVSRKIKRVSQLAKDKKRAQEVE 132 (268)
Q Consensus 72 -----p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 132 (268)
|....++..+|.++...|++++|+..|++++++ +|....++..++.++...|++++|....
T Consensus 145 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 218 (311)
T 3nf1_A 145 LGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLY 218 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 556788999999999999999999999999998 7777889999999999999999997764
No 117
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.70 E-value=4.2e-17 Score=129.64 Aligned_cols=166 Identities=11% Similarity=0.067 Sum_probs=129.0
Q ss_pred HHcCCHHHHHHHHHHHHhc--------CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh--------CCCCHHHHHHH
Q 024419 18 FKAGNYLKAAALYTQAIKQ--------DPSNPTLFSNRAAAFLHLVKLNKALADAETTISL--------NPQWEKGYFRK 81 (268)
Q Consensus 18 ~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l 81 (268)
...|++++|+.+|+++++. +|..+.++..+|.++...|++++|+..+++++.+ +|....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567888888888888874 3667889999999999999999999999999987 46668899999
Q ss_pred HHHHHHccCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhh
Q 024419 82 GCILEAMEQYDDALSAFQTALQY--------NPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSE 153 (268)
Q Consensus 82 a~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (268)
|.++...|++++|+..|++++.+ +|....++..+|.++...|++++|...... .+...... ...-..
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~--al~~~~~~---~~~~~~ 166 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRR--ALEIYATR---LGPDDP 166 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH--HHHHHHHH---SCTTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH--HHHHHHHh---cCCCCH
Confidence 99999999999999999999998 577788999999999999999999776421 11110000 000011
Q ss_pred hcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH
Q 024419 154 KYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK 188 (268)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 188 (268)
.........+.++...+++++|+..+.+++.+.+.
T Consensus 167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 167 NVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 201 (283)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 12234455666778889999999999999887654
No 118
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.70 E-value=1.7e-17 Score=115.26 Aligned_cols=97 Identities=13% Similarity=0.137 Sum_probs=87.9
Q ss_pred HcCCHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHH
Q 024419 19 KAGNYLKAAALYTQAIKQ---DPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDAL 95 (268)
Q Consensus 19 ~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~ 95 (268)
..|++++|+..|+++++. +|+++.++.++|.++..+|++++|+..|+++++++|+++.+++.+|.++...|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 468999999999999999 69999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHH
Q 024419 96 SAFQTALQYNPQSAEVSRKI 115 (268)
Q Consensus 96 ~~~~~~l~~~p~~~~~~~~l 115 (268)
..++++++.+|+++.+....
T Consensus 82 ~~~~~al~~~p~~~~~~~~~ 101 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQSYK 101 (117)
T ss_dssp HHHHHHHHHHCCCHHHHHTH
T ss_pred HHHHHHHHhCCCcHHHHHHH
Confidence 99999999999998765433
No 119
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.70 E-value=1.9e-14 Score=116.92 Aligned_cols=181 Identities=7% Similarity=-0.027 Sum_probs=141.3
Q ss_pred CchHhHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCC--hHHHHHHHHHHHh
Q 024419 2 AAEAEEMSLKDKGNEFFKAGN----------YLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVK--LNKALADAETTIS 69 (268)
Q Consensus 2 ~~~~~~~~~~~~g~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~--~~~A~~~~~~al~ 69 (268)
.+|++..+|..++.++...+. +++++.++..++..+|++..+|.+++.++...+. +++++.++.++++
T Consensus 59 ~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~ 138 (331)
T 3dss_A 59 ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLE 138 (331)
T ss_dssp TCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHH
T ss_pred HCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHH
Confidence 478999999999999987766 7899999999999999999999999999999994 8999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH--------------HHHHHhHHHHhh
Q 024419 70 LNPQWEKGYFRKGCILEAMEQ-YDDALSAFQTALQYNPQSAEVSRKIKRVSQLA--------------KDKKRAQEVENI 134 (268)
Q Consensus 70 ~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~--------------~~~~~a~~~~~~ 134 (268)
.+|.|..+|...+.+....|. ++++++++.++++.+|.|..+|...+.+.... +.++++.+..
T Consensus 139 ~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~-- 216 (331)
T 3dss_A 139 ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELV-- 216 (331)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHH--
T ss_pred hCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHH--
Confidence 999999999999999999999 69999999999999999999999999998877 4555554432
Q ss_pred hhhHHHhhhHHHHH---HHhhh-hcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH
Q 024419 135 RSNVDMVQHLDEFK---SEMSE-KYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK 188 (268)
Q Consensus 135 ~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 188 (268)
...+...|...... ..+.. ..+.... . ....+.++++++.+.+.+++.|+
T Consensus 217 ~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~--~--~~~~~~l~~el~~~~elle~~pd 270 (331)
T 3dss_A 217 QNAFFTDPNDQSAWFYHRWLLGAGSGRCEL--S--VEKSTVLQSELESCKELQELEPE 270 (331)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHSSSCGGGC--C--HHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhCCCCHHHHHHHHHHHHhccCcccc--c--hHHHHHHHHHHHHHHHHHhhCcc
Confidence 22222222221111 11111 1111000 0 22356788888888888888887
No 120
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.69 E-value=6.1e-16 Score=119.99 Aligned_cols=127 Identities=12% Similarity=0.150 Sum_probs=116.0
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChH---HHHHHHHHHHH------------------cCChHHHHHHH
Q 024419 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPT---LFSNRAAAFLH------------------LVKLNKALADA 64 (268)
Q Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~a~~~~~------------------~~~~~~A~~~~ 64 (268)
...+++.+|.+++..|++++|+..|+++++.+|++.. +++.+|.++.. .|++++|+..|
T Consensus 40 ~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 119 (225)
T 2yhc_A 40 SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDF 119 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHH
Confidence 3578999999999999999999999999999999874 89999999986 57899999999
Q ss_pred HHHHhhCCCCHHHH-----------------HHHHHHHHHccCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHHHH
Q 024419 65 ETTISLNPQWEKGY-----------------FRKGCILEAMEQYDDALSAFQTALQYNPQSA---EVSRKIKRVSQLAKD 124 (268)
Q Consensus 65 ~~al~~~p~~~~~~-----------------~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~~~ 124 (268)
+++++.+|++..++ +.+|.++...|++++|+..|+++++..|+++ .++..++.++..+|+
T Consensus 120 ~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~ 199 (225)
T 2yhc_A 120 SKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQM 199 (225)
T ss_dssp HHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCC
Confidence 99999999987554 6789999999999999999999999999986 679999999999999
Q ss_pred HHHhHHHH
Q 024419 125 KKRAQEVE 132 (268)
Q Consensus 125 ~~~a~~~~ 132 (268)
+++|....
T Consensus 200 ~~~A~~~~ 207 (225)
T 2yhc_A 200 NAQAEKVA 207 (225)
T ss_dssp HHHHHHHH
T ss_pred cHHHHHHH
Confidence 99997663
No 121
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.69 E-value=1.3e-15 Score=122.90 Aligned_cols=198 Identities=8% Similarity=-0.003 Sum_probs=150.4
Q ss_pred chHhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCChHHHHHHHHHH----HHc---CChHHHHHHHHHHHhhCCC
Q 024419 3 AEAEEMSLKDKGNEFFKAG--NYLKAAALYTQAIKQDPSNPTLFSNRAAAF----LHL---VKLNKALADAETTISLNPQ 73 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~a~~~----~~~---~~~~~A~~~~~~al~~~p~ 73 (268)
+|++..++..+|.++...+ ++++++..+..++..+|++..+|+.++.++ ... +++++++..+.++++.+|+
T Consensus 63 nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk 142 (306)
T 3dra_A 63 LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPK 142 (306)
T ss_dssp CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT
T ss_pred CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCC
Confidence 6889999999999999999 999999999999999999999999999999 777 8999999999999999999
Q ss_pred CHHHHHHHHHHHHHccCHH--HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH------HHHhHHHHhhhhhHHHhhhHH
Q 024419 74 WEKGYFRKGCILEAMEQYD--DALSAFQTALQYNPQSAEVSRKIKRVSQLAKD------KKRAQEVENIRSNVDMVQHLD 145 (268)
Q Consensus 74 ~~~~~~~la~~~~~~~~~~--~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~~~~~~~ 145 (268)
+..+|..++.++...|.++ ++++.+.++++.+|.|..+|...+.+....+. ++++.+.. ...+...
T Consensus 143 ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~--~~aI~~~---- 216 (306)
T 3dra_A 143 NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYV--KDKIVKC---- 216 (306)
T ss_dssp CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHH--HHHHHHC----
T ss_pred CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHH--HHHHHhC----
Confidence 9999999999999999998 99999999999999999999999998877665 44443331 1111111
Q ss_pred HHHHHhhhhcCchhhhHHHHHHHHHHHHH-HHHhhhhhhhch-------------hHHHHHhhhhhhhHhhhhHHhc-CC
Q 024419 146 EFKSEMSEKYGAEECWKHVFSFVVETMET-AVKSWHETSKVD-------------AKVYFLLDKEKTDTEKYAPIVN-VD 210 (268)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-A~~~~~~~~~~~-------------~~~~~~~~~~~~a~~~~~~~~~-~~ 210 (268)
+....++.+++.+....++... ......+.+.+. .+++...|+.++|++.|+.+.. ++
T Consensus 217 -------p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~D 289 (306)
T 3dra_A 217 -------PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYN 289 (306)
T ss_dssp -------SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred -------CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccC
Confidence 1112222222222222222111 222333333322 2256677899999999999986 68
Q ss_pred ccc
Q 024419 211 KAF 213 (268)
Q Consensus 211 ~~~ 213 (268)
|..
T Consensus 290 pir 292 (306)
T 3dra_A 290 PIR 292 (306)
T ss_dssp GGG
T ss_pred hHH
Confidence 853
No 122
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.69 E-value=5.4e-17 Score=133.68 Aligned_cols=125 Identities=21% Similarity=0.303 Sum_probs=96.5
Q ss_pred hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh-----------------HHHHHHHHHHHHcCChHHHHHHHHH
Q 024419 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP-----------------TLFSNRAAAFLHLVKLNKALADAET 66 (268)
Q Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-----------------~~~~~~a~~~~~~~~~~~A~~~~~~ 66 (268)
+..+..+..+|..++..|+|++|+..|++++...|.+. .+++++|.|+..+|++++|+..|++
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~ 255 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI 255 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 56788899999999999999999999999999999877 4999999999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH-HHHHHh
Q 024419 67 TISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA-KDKKRA 128 (268)
Q Consensus 67 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~-~~~~~a 128 (268)
++.++|+++.+++++|.++..+|++++|+..|+++++++|++..++..++.+.... +..+.+
T Consensus 256 al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 256 VLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999885544 333444
No 123
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.68 E-value=8.8e-16 Score=114.34 Aligned_cols=116 Identities=12% Similarity=0.121 Sum_probs=106.8
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH-HHHccCH--H
Q 024419 16 EFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI-LEAMEQY--D 92 (268)
Q Consensus 16 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~~~~--~ 92 (268)
.+...|++++|+..++++++.+|.++.++..+|.++...|++++|+..|++++.++|+++.++..+|.+ +...|++ +
T Consensus 19 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 19 QFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp CCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 356788999999999999999999999999999999999999999999999999999999999999999 8899999 9
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHH
Q 024419 93 DALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV 131 (268)
Q Consensus 93 ~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 131 (268)
+|+..|+++++.+|+++.++..+|.++...|++++|...
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 137 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIEL 137 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHH
Confidence 999999999999999999999999999999999999765
No 124
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.67 E-value=4.1e-16 Score=109.98 Aligned_cols=90 Identities=13% Similarity=0.109 Sum_probs=75.9
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH-------H
Q 024419 40 NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV-------S 112 (268)
Q Consensus 40 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~-------~ 112 (268)
.+.++.++|.++++.|+|++|+.+|+++++++|+++.+|.++|.+|..+|++++|+..|+++++++|++... +
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 456788999999999999999999999999999999999999999999999999999999999999987544 4
Q ss_pred HHHHHHHHHHHHHHHhH
Q 024419 113 RKIKRVSQLAKDKKRAQ 129 (268)
Q Consensus 113 ~~l~~~~~~~~~~~~a~ 129 (268)
..+|.++..++++++|+
T Consensus 87 ~~lg~~~~~~~~~~~A~ 103 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAV 103 (127)
T ss_dssp HHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHcCCHHHHH
Confidence 44444444444444443
No 125
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.67 E-value=2.5e-14 Score=116.21 Aligned_cols=217 Identities=13% Similarity=0.108 Sum_probs=159.8
Q ss_pred HHHHHHcCCHH-HHHHHHHHHHhcCCCChHHHHHHHHHHHHcCC----------hHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419 14 GNEFFKAGNYL-KAAALYTQAIKQDPSNPTLFSNRAAAFLHLVK----------LNKALADAETTISLNPQWEKGYFRKG 82 (268)
Q Consensus 14 g~~~~~~~~~~-~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~la 82 (268)
.......|++. +|+..+.+++..+|.+..+|+.++.+...++. +++++..+..++..+|++..+|..++
T Consensus 36 ~~~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~ 115 (331)
T 3dss_A 36 VFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRC 115 (331)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 33445678775 89999999999999999999999999998876 68999999999999999999999999
Q ss_pred HHHHHccC--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH-HHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchh
Q 024419 83 CILEAMEQ--YDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKD-KKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEE 159 (268)
Q Consensus 83 ~~~~~~~~--~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (268)
.++...++ +++++..+.++++.+|.|..+|...+.+....+. ++++.+.. ...+. ..+....++
T Consensus 116 wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~--~~~I~-----------~~p~N~SAW 182 (331)
T 3dss_A 116 WLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT--DSLIT-----------RNFSNYSSW 182 (331)
T ss_dssp HHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH--HHHHH-----------HCSCCHHHH
T ss_pred HHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH--HHHHH-----------HCCCCHHHH
Confidence 99999994 9999999999999999999999999999888776 45554331 11111 111122222
Q ss_pred hhHHHHHHHH--------------HHHHHHHHhhhhhhhchhH---HHH----H--------------hhhhhhhHhhhh
Q 024419 160 CWKHVFSFVV--------------ETMETAVKSWHETSKVDAK---VYF----L--------------LDKEKTDTEKYA 204 (268)
Q Consensus 160 ~~~~~~~~~~--------------~~~~~A~~~~~~~~~~~~~---~~~----~--------------~~~~~~a~~~~~ 204 (268)
..++.+.... +.++++++.+.+++..+|. +++ . ++.++++++.+.
T Consensus 183 ~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~ 262 (331)
T 3dss_A 183 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCK 262 (331)
T ss_dssp HHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHH
Confidence 3333322222 6789999999999999997 111 1 145678888888
Q ss_pred HHhcCCccccCccc-hhHHHHHH-----HHH--HHHHHHHHhhhhCCCCc
Q 024419 205 PIVNVDKAFESPHT-HGSCFQFL-----RQY--ADDSFSSAACLVAPKSI 246 (268)
Q Consensus 205 ~~~~~~~~~~~~~~-~~~~~~~~-----~~~--a~~~~~ka~~~~~p~~~ 246 (268)
.+++++|+. .+. .+.+.... +.. ....+.+.+ ++||...
T Consensus 263 elle~~pd~--~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~Dp~r~ 309 (331)
T 3dss_A 263 ELQELEPEN--KWCLLTIILLMRALDPLLYEKETLQYFSTLK-AVDPMRA 309 (331)
T ss_dssp HHHHHCTTC--HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHH-HHCGGGH
T ss_pred HHHhhCccc--chHHHHHHHHHHhhcccccHHHHHHHHHHHH-HhCcchh
Confidence 888888865 121 11111111 112 677888888 8898753
No 126
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.67 E-value=6.2e-16 Score=115.25 Aligned_cols=128 Identities=13% Similarity=0.054 Sum_probs=114.5
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH-HcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFL-HLVKLNKALADAETTISLNPQWEKGYFRK 81 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l 81 (268)
.|.++.+++.+|.++...|++++|+..+++++..+| ++..+..++.+.. ..++..+|+..+++++..+|+++.+++.+
T Consensus 36 ~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~l 114 (176)
T 2r5s_A 36 LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACEL 114 (176)
T ss_dssp HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHH
Confidence 588899999999999999999999999999999999 8877776665533 33455568999999999999999999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHHHHHHHhHHH
Q 024419 82 GCILEAMEQYDDALSAFQTALQYNPQS--AEVSRKIKRVSQLAKDKKRAQEV 131 (268)
Q Consensus 82 a~~~~~~~~~~~A~~~~~~~l~~~p~~--~~~~~~l~~~~~~~~~~~~a~~~ 131 (268)
|.++...|++++|+..|+++++.+|+. +.++..++.++...|+.++|...
T Consensus 115 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 115 AVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 999999999999999999999999976 66999999999999999888655
No 127
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.67 E-value=1.5e-14 Score=126.10 Aligned_cols=208 Identities=11% Similarity=0.024 Sum_probs=158.8
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHH-------cCChH-------HHHHHHHHHHh-hCCCCHHHHHHHHHHHHHc
Q 024419 24 LKAAALYTQAIKQDPSNPTLFSNRAAAFLH-------LVKLN-------KALADAETTIS-LNPQWEKGYFRKGCILEAM 88 (268)
Q Consensus 24 ~~A~~~~~~al~~~p~~~~~~~~~a~~~~~-------~~~~~-------~A~~~~~~al~-~~p~~~~~~~~la~~~~~~ 88 (268)
..|+..|++++..+|.++.+|+.+|..+.. .|+++ +|+..|+++++ ++|++..+|..+|.++...
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 478899999999999999999999999986 79987 99999999997 8999999999999999999
Q ss_pred cCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHH-
Q 024419 89 EQYDDALSAFQTALQYNPQSA-EVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFS- 166 (268)
Q Consensus 89 ~~~~~A~~~~~~~l~~~p~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 166 (268)
|++++|+..|+++++++|.++ .+|..++.+....|+.++|..+.... +...+ .........+.+.
T Consensus 335 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~A--l~~~~-----------~~~~~~~~~a~~~~ 401 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA--REDAR-----------TRHHVYVTAALMEY 401 (530)
T ss_dssp TCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTCTT-----------CCTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHH--HhccC-----------CchHHHHHHHHHHH
Confidence 999999999999999999986 69999999999999999987663211 11100 0011111222222
Q ss_pred HHHHHHHHHHHhhhhhhhchhH----------HHHHhhhhhhhHhhhhHHhcCCccccC--ccch---hHHHHHHHHH--
Q 024419 167 FVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAFES--PHTH---GSCFQFLRQY-- 229 (268)
Q Consensus 167 ~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~-- 229 (268)
...+++++|...|+++++..|+ .+...|+.++|...|++++...|.... .... ..+....|..
T Consensus 402 ~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~ 481 (530)
T 2ooe_A 402 YCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLAS 481 (530)
T ss_dssp HHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHH
T ss_pred HHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 2367889999999999999886 244668999999999999987553210 0011 1122222334
Q ss_pred HHHHHHHHhhhhCCCC
Q 024419 230 ADDSFSSAACLVAPKS 245 (268)
Q Consensus 230 a~~~~~ka~~~~~p~~ 245 (268)
+...+.+++ +..|++
T Consensus 482 ~~~~~~r~~-~~~p~~ 496 (530)
T 2ooe_A 482 ILKVEKRRF-TAFREE 496 (530)
T ss_dssp HHHHHHHHH-HHTHHH
T ss_pred HHHHHHHHH-HHCchh
Confidence 888888999 888853
No 128
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.65 E-value=2.4e-14 Score=114.75 Aligned_cols=191 Identities=12% Similarity=0.056 Sum_probs=129.8
Q ss_pred CCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024419 38 PSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKR 117 (268)
Q Consensus 38 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 117 (268)
|.++..+..+|.++...|++++|+..|++++..+|+++.++..+|.++..+|++++|+..++++++++|++..++..+|.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH-----HHHH
Q 024419 118 VSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK-----VYFL 192 (268)
Q Consensus 118 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~ 192 (268)
++...|++++|..... ..+...+ .....+... .+................ ....-++. ....
T Consensus 81 ~~~~~g~~~~A~~~~~--~al~l~p-------~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~l~~l~ 147 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQ--RAYSLAK-------EQRLNFGDD-IPSALRIAKKKRWNSIEE---RRIHQESELHSYLTRLI 147 (281)
T ss_dssp HHHHTTCHHHHHHHHH--HHHHHHH-------HTTCCCCSH-HHHHHHHHHHHHHHHHHH---TCCCCCCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHH--HHHHhCc-------cchhhHHHH-HHHHHHHHHHHHHHHHHH---HHHhhhHHHHHHHHHHH
Confidence 9999999999976632 1111111 111111111 111110111111111111 11111111 1224
Q ss_pred hhhhhhhHhhhhHHhcCCccccCccc-hhHHHHHH-HHH--HHHHHHHHhhhhC
Q 024419 193 LDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFL-RQY--ADDSFSSAACLVA 242 (268)
Q Consensus 193 ~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~--a~~~~~ka~~~~~ 242 (268)
.|+.++|++.++.++.++|....... ....+... +.+ +.+.|.++. +..
T Consensus 148 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~-~~~ 200 (281)
T 2c2l_A 148 AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVD-EKR 200 (281)
T ss_dssp HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSS-CTT
T ss_pred HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhh-ccc
Confidence 68888999999999998875421111 22233333 344 888898888 643
No 129
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.65 E-value=1.9e-16 Score=130.37 Aligned_cols=151 Identities=11% Similarity=0.067 Sum_probs=124.4
Q ss_pred cCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---------------HHHHHHHHHH
Q 024419 20 AGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW---------------EKGYFRKGCI 84 (268)
Q Consensus 20 ~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~ 84 (268)
.+++++|+..|++++..+|.++.++..+|.+++..|++++|+..|++++.++|++ ..++.++|.+
T Consensus 126 L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888999999999999999999999999999999999999999999999 6999999999
Q ss_pred HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHH
Q 024419 85 LEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHV 164 (268)
Q Consensus 85 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (268)
+..+|++++|+..|+++++++|+++.++..+|.++..+|++++|..... ..+. +.+.........+.
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~--~al~-----------l~P~~~~a~~~l~~ 272 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQ--KVLQ-----------LYPNNKAAKTQLAV 272 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH--HHHH-----------HCSSCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHH--HHHH-----------HCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999976631 1111 22222334455555
Q ss_pred HHHHHHHHHHH-HHhhhhhh
Q 024419 165 FSFVVETMETA-VKSWHETS 183 (268)
Q Consensus 165 ~~~~~~~~~~A-~~~~~~~~ 183 (268)
+...++++++| ...|.+.+
T Consensus 273 ~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 273 CQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66667777776 33444443
No 130
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.64 E-value=5.6e-15 Score=103.67 Aligned_cols=95 Identities=13% Similarity=0.170 Sum_probs=90.6
Q ss_pred CCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024419 38 PSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKR 117 (268)
Q Consensus 38 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 117 (268)
|.++..+..+|.+++..|++++|+..|++++.++|+++.++..+|.++...|++++|+..|+++++++|+++.++..+|.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHH
Q 024419 118 VSQLAKDKKRAQEVE 132 (268)
Q Consensus 118 ~~~~~~~~~~a~~~~ 132 (268)
++...|++++|....
T Consensus 81 ~~~~~~~~~~A~~~~ 95 (126)
T 3upv_A 81 AQIAVKEYASALETL 95 (126)
T ss_dssp HHHHTTCHHHHHHHH
T ss_pred HHHHHhCHHHHHHHH
Confidence 999999999997653
No 131
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.64 E-value=7.4e-15 Score=122.59 Aligned_cols=198 Identities=10% Similarity=0.005 Sum_probs=146.9
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-------ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPS-------NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ-- 73 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-- 73 (268)
.|..+.++..+|.++...|++++|+.+++++++..+. .+.++.++|.+|..+|++++|+..|++++.+.+.
T Consensus 137 ~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~ 216 (378)
T 3q15_A 137 DIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQ 216 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC
Confidence 3567889999999999999999999999999987543 2467889999999999999999999999987431
Q ss_pred ----CHHHHHHHHHHHHHccCHHHHHHHHHHHHh-----hCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHH---h
Q 024419 74 ----WEKGYFRKGCILEAMEQYDDALSAFQTALQ-----YNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDM---V 141 (268)
Q Consensus 74 ----~~~~~~~la~~~~~~~~~~~A~~~~~~~l~-----~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~ 141 (268)
...++.++|.++...|++++|+..|+++++ .+|..+.++..+|.++...|++++|.........+.. .
T Consensus 217 ~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 296 (378)
T 3q15_A 217 NDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSH 296 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCC
T ss_pred CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC
Confidence 256899999999999999999999999999 7888899999999999999999999776421111100 0
Q ss_pred hhH---HHHHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhch---------hHHHHHhhhhhhhHhhhhHHhcC
Q 024419 142 QHL---DEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVD---------AKVYFLLDKEKTDTEKYAPIVNV 209 (268)
Q Consensus 142 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~~~~~a~~~~~~~~~~ 209 (268)
+.. ......+....+. ...+.+|+..+++..... ..+|...|++++|...|++++.+
T Consensus 297 ~~~~~~~~~l~~ly~~~~~-----------~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 297 KFYKELFLFLQAVYKETVD-----------ERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp SCHHHHHHHHHHHHSSSCC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCc-----------HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 000 0011111111111 133666666665532111 12677889999999999998876
Q ss_pred Cc
Q 024419 210 DK 211 (268)
Q Consensus 210 ~~ 211 (268)
..
T Consensus 366 ~~ 367 (378)
T 3q15_A 366 QE 367 (378)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 132
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.64 E-value=6.6e-15 Score=112.66 Aligned_cols=104 Identities=13% Similarity=0.149 Sum_probs=100.1
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH----------
Q 024419 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWE---------- 75 (268)
Q Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---------- 75 (268)
++.+++.+|.++...|++++|+..|++++..+|+++.+++++|.++..+|++++|+..|++++...|.+.
T Consensus 36 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 115 (213)
T 1hh8_A 36 HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQ 115 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBC
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccc
Confidence 5679999999999999999999999999999999999999999999999999999999999999888876
Q ss_pred ------HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH
Q 024419 76 ------KGYFRKGCILEAMEQYDDALSAFQTALQYNPQSA 109 (268)
Q Consensus 76 ------~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~ 109 (268)
.+++.+|.++...|++++|+..|+++++++|++.
T Consensus 116 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 116 FKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp CEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred cCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence 9999999999999999999999999999999874
No 133
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.64 E-value=2.6e-14 Score=115.20 Aligned_cols=176 Identities=11% Similarity=0.008 Sum_probs=134.6
Q ss_pred hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh------HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---
Q 024419 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP------TLFSNRAAAFLHLVKLNKALADAETTISLNPQW--- 74 (268)
Q Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--- 74 (268)
|.....+...+..++..|+|++|++.+.++++..|... ..+..+|.++...|++++|+..+++++...+..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 151 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV 151 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch
Confidence 45567788999999999999999999999999988754 346778999999999999999999999876543
Q ss_pred ---HHHHHHHHHHHHHccCHHHHHHHHHHHH---hhCCCCH----HHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhH
Q 024419 75 ---EKGYFRKGCILEAMEQYDDALSAFQTAL---QYNPQSA----EVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHL 144 (268)
Q Consensus 75 ---~~~~~~la~~~~~~~~~~~A~~~~~~~l---~~~p~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 144 (268)
..++..+|.+|...|++++|+..|++++ +..|++. .++..+|.++..+|++++|...... .+.....
T Consensus 152 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~k--al~~~~~- 228 (293)
T 2qfc_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNK--AIEISCR- 228 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH--HHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHH--HHHHHHh-
Confidence 5689999999999999999999999999 5567653 6899999999999999999776421 1111100
Q ss_pred HHHHHHhhhhcCchhhhHHHHHHHHHHHHHH-HHhhhhhhhch
Q 024419 145 DEFKSEMSEKYGAEECWKHVFSFVVETMETA-VKSWHETSKVD 186 (268)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A-~~~~~~~~~~~ 186 (268)
.......+..+...|..+..++++++| ..++.+++.+.
T Consensus 229 ----~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 229 ----INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp ----TTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred ----cCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 000011133445566666777777777 66677776544
No 134
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.63 E-value=1.6e-15 Score=122.13 Aligned_cols=129 Identities=9% Similarity=-0.011 Sum_probs=121.9
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 82 (268)
.|.++.++..+|.++...|++++|+..+++++..+|+....+...+..+...++.++|+..+++++..+|+++.+++.+|
T Consensus 147 ~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la 226 (287)
T 3qou_A 147 SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLA 226 (287)
T ss_dssp TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHH
Confidence 57889999999999999999999999999999999988888888888899999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHHHHHHHhHHH
Q 024419 83 CILEAMEQYDDALSAFQTALQYNPQS--AEVSRKIKRVSQLAKDKKRAQEV 131 (268)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~~l~~~p~~--~~~~~~l~~~~~~~~~~~~a~~~ 131 (268)
.++...|++++|+..|.++++.+|++ ..++..++.++...|+.++|...
T Consensus 227 ~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~ 277 (287)
T 3qou_A 227 LQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASX 277 (287)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHH
Confidence 99999999999999999999999999 89999999999999988877544
No 135
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.62 E-value=2.8e-15 Score=121.72 Aligned_cols=172 Identities=15% Similarity=0.104 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC------CH
Q 024419 8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN------PTLFSNRAAAFLHLVKLNKALADAETTISLNPQ------WE 75 (268)
Q Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~------~~ 75 (268)
..+...|.++...|++++|+..|.+++.+.+.. ..++.++|.+|..+|++++|+.+|++++.+.+. ..
T Consensus 37 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 116 (307)
T 2ifu_A 37 SEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAA 116 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 345556788999999999999999999986543 568899999999999999999999999988543 24
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHH
Q 024419 76 KGYFRKGCILEAMEQYDDALSAFQTALQYNPQS------AEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKS 149 (268)
Q Consensus 76 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 149 (268)
.++..+|.+|.. |++++|+.+|++++++.|.. ..++..+|.++..+|++++|+.... ..+...+....
T Consensus 117 ~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~--~al~~~~~~~~--- 190 (307)
T 2ifu_A 117 MALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQ--KEKSMYKEMEN--- 190 (307)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH--HHHHHHHHTTC---
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHH--HHHHHHHHcCC---
Confidence 678899999988 99999999999999988754 5678899999999999999976632 11111111000
Q ss_pred HhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH
Q 024419 150 EMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK 188 (268)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 188 (268)
...........+..+...+++++|+..|++++ ++|.
T Consensus 191 --~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~ 226 (307)
T 2ifu_A 191 --YPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPG 226 (307)
T ss_dssp --HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTT
T ss_pred --hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCC
Confidence 00001122333444444566666666666666 6554
No 136
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.61 E-value=1.7e-14 Score=125.67 Aligned_cols=197 Identities=10% Similarity=-0.029 Sum_probs=152.9
Q ss_pred chHhHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHh-cCCCChHHHHHHHHHHHHcCChHHHHHHHHHH
Q 024419 3 AEAEEMSLKDKGNEFFK-------AGNYL-------KAAALYTQAIK-QDPSNPTLFSNRAAAFLHLVKLNKALADAETT 67 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~-------~~~~~-------~A~~~~~~al~-~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 67 (268)
.|.++..|+..|..+.. .|+++ +|+..|+++++ .+|++..+|..+|.++...|++++|+..|+++
T Consensus 268 ~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~a 347 (530)
T 2ooe_A 268 LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRL 347 (530)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 47788999999999986 79987 99999999997 89999999999999999999999999999999
Q ss_pred HhhCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHHHHHHHhHHHHhhhhhHHHhhhHH
Q 024419 68 ISLNPQWE-KGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVS-QLAKDKKRAQEVENIRSNVDMVQHLD 145 (268)
Q Consensus 68 l~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~ 145 (268)
+.++|.++ .+|..+|.++...|++++|+..|+++++..|.+...+...+.+. ...|+.++|..+.. ..+...
T Consensus 348 l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e--~al~~~---- 421 (530)
T 2ooe_A 348 LAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFE--LGLKKY---- 421 (530)
T ss_dssp HHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHH--HHHHHH----
T ss_pred hCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHH--HHHHHC----
Confidence 99999985 69999999999999999999999999999998888777666553 34667777766532 111111
Q ss_pred HHHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhch---hH----HH-------HHhhhhhhhHhhhhHHhcCCc
Q 024419 146 EFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVD---AK----VY-------FLLDKEKTDTEKYAPIVNVDK 211 (268)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~----~~-------~~~~~~~~a~~~~~~~~~~~~ 211 (268)
+.....+...+.+....++.++|...|++++... |. ++ ...|+.+.+...+.+++...|
T Consensus 422 -------p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 422 -------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp -------TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred -------CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 1112222333334445688888999999888753 32 22 244777788888888887766
Q ss_pred c
Q 024419 212 A 212 (268)
Q Consensus 212 ~ 212 (268)
.
T Consensus 495 ~ 495 (530)
T 2ooe_A 495 E 495 (530)
T ss_dssp H
T ss_pred h
Confidence 3
No 137
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.61 E-value=7.5e-14 Score=120.51 Aligned_cols=232 Identities=8% Similarity=0.032 Sum_probs=154.4
Q ss_pred hHhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCCCH
Q 024419 4 EAEEMSLKDKGNEFFK----AGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLH----LVKLNKALADAETTISLNPQWE 75 (268)
Q Consensus 4 ~~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~ 75 (268)
+.++++.+.+|..+.. .+++++|+..|+++.+. +++.+++.+|.+|.. .+++++|+.+|+++... .++
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~ 111 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLP 111 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCH
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCH
Confidence 4578889999999998 89999999999999876 678999999999999 99999999999999875 578
Q ss_pred HHHHHHHHHHHH----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----HHHHHHhHHHHhhhhh---HHHhhhH
Q 024419 76 KGYFRKGCILEA----MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL----AKDKKRAQEVENIRSN---VDMVQHL 144 (268)
Q Consensus 76 ~~~~~la~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~---~~~~~~~ 144 (268)
.+++.+|.+|.. .+++++|+..|+++.+. +++.++..+|.++.. .+++++|......... ......+
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~L 189 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQL 189 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999998 88999999999999765 688999999999876 5677777655321100 0000001
Q ss_pred ------------------HHHHHHhhhhcCchhhhHHHHHHH----HHHHHHHHHhhhhhhhchhH--------HHHH--
Q 024419 145 ------------------DEFKSEMSEKYGAEECWKHVFSFV----VETMETAVKSWHETSKVDAK--------VYFL-- 192 (268)
Q Consensus 145 ------------------~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~--------~~~~-- 192 (268)
..+...............+.++.. .+++++|+..|++++...+. +|..
T Consensus 190 g~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~ 269 (490)
T 2xm6_A 190 GYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGL 269 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTT
T ss_pred HHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC
Confidence 111111111111112222333332 45667777777776554332 2333
Q ss_pred --hhhhhhhHhhhhHHhcCCccccCccchhHHHHHH-----HHH--HHHHHHHHhhhhCC
Q 024419 193 --LDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFL-----RQY--ADDSFSSAACLVAP 243 (268)
Q Consensus 193 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~--a~~~~~ka~~~~~p 243 (268)
.++..+|+..|+++.+.+... .....+.++... +++ |...|++|+ +..+
T Consensus 270 ~~~~d~~~A~~~~~~a~~~~~~~-a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~-~~~~ 327 (490)
T 2xm6_A 270 AGAKEPLKALEWYRKSAEQGNSD-GQYYLAHLYDKGAEGVAKNREQAISWYTKSA-EQGD 327 (490)
T ss_dssp TSSCCHHHHHHHHHHHHTTTCHH-HHHHHHHHHHHCBTTBCCCHHHHHHHHHHHH-HTTC
T ss_pred CCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHcCCCCCcCCHHHHHHHHHHHH-hcCC
Confidence 566777777777777653211 011244444443 444 777777777 6543
No 138
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.61 E-value=2.7e-14 Score=100.35 Aligned_cols=106 Identities=23% Similarity=0.459 Sum_probs=101.3
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 82 (268)
.|.+...+..+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+..+++++..+|.+..++..+|
T Consensus 31 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 110 (136)
T 2fo7_A 31 DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLG 110 (136)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 35667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCC
Q 024419 83 CILEAMEQYDDALSAFQTALQYNPQS 108 (268)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~~l~~~p~~ 108 (268)
.++...|++++|+..+++++..+|++
T Consensus 111 ~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 111 NAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHccHHHHHHHHHHHHccCCCC
Confidence 99999999999999999999999864
No 139
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.61 E-value=2.7e-14 Score=99.63 Aligned_cols=91 Identities=16% Similarity=0.134 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 024419 42 TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL 121 (268)
Q Consensus 42 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 121 (268)
..++.+|.++...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+++++++|+++.++..+|.++..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHH
Q 024419 122 AKDKKRAQEVE 132 (268)
Q Consensus 122 ~~~~~~a~~~~ 132 (268)
.|++++|....
T Consensus 98 ~g~~~~A~~~~ 108 (121)
T 1hxi_A 98 EHNANAALASL 108 (121)
T ss_dssp HHHHHHHHHHH
T ss_pred cCCHHHHHHHH
Confidence 99999997663
No 140
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.60 E-value=3.4e-14 Score=98.01 Aligned_cols=101 Identities=12% Similarity=0.167 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 024419 24 LKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQ 103 (268)
Q Consensus 24 ~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~ 103 (268)
++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++.++|+++.+++.+|.++...|++++|+..|+++++
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCC--CHHHHHHHHHHHHHHHH
Q 024419 104 YNPQ--SAEVSRKIKRVSQLAKD 124 (268)
Q Consensus 104 ~~p~--~~~~~~~l~~~~~~~~~ 124 (268)
++|. +......+......++.
T Consensus 82 ~~~~~~~~~~~~~l~~~l~~l~~ 104 (115)
T 2kat_A 82 AAQSRGDQQVVKELQVFLRRLAR 104 (115)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHH
T ss_pred hccccccHHHHHHHHHHHHHhcc
Confidence 9884 44555555555444443
No 141
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.60 E-value=5.2e-14 Score=103.45 Aligned_cols=95 Identities=15% Similarity=0.098 Sum_probs=91.3
Q ss_pred CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419 37 DPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIK 116 (268)
Q Consensus 37 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~ 116 (268)
++.++..++.+|.+++..|++++|+..|++++.++|+++.+++.+|.++...|++++|+..|+++++++|+++.++..+|
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 45667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHH
Q 024419 117 RVSQLAKDKKRAQEV 131 (268)
Q Consensus 117 ~~~~~~~~~~~a~~~ 131 (268)
.++...|++++|...
T Consensus 87 ~~~~~~g~~~~A~~~ 101 (164)
T 3sz7_A 87 LARFDMADYKGAKEA 101 (164)
T ss_dssp HHHHHTTCHHHHHHH
T ss_pred HHHHHccCHHHHHHH
Confidence 999999999999766
No 142
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.60 E-value=1.3e-13 Score=119.01 Aligned_cols=229 Identities=11% Similarity=0.035 Sum_probs=166.8
Q ss_pred HhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCCCHH
Q 024419 5 AEEMSLKDKGNEFFK----AGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLH----LVKLNKALADAETTISLNPQWEK 76 (268)
Q Consensus 5 ~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~ 76 (268)
.++.+++.+|..+.. .+++++|+..|+++.+. .++.+++.+|.+|.. .+++++|+..|+++... .++.
T Consensus 73 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~ 148 (490)
T 2xm6_A 73 GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDS 148 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHH
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHH
Confidence 457788999999999 99999999999999875 588999999999999 88999999999999875 5789
Q ss_pred HHHHHHHHHHH----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----HHHHHHhHHHHhhhhh---HHHh----
Q 024419 77 GYFRKGCILEA----MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL----AKDKKRAQEVENIRSN---VDMV---- 141 (268)
Q Consensus 77 ~~~~la~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~---~~~~---- 141 (268)
+++.+|.+|.. .+++++|+..|+++++. +++.++..+|.++.. .+++++|......... ....
T Consensus 149 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg 226 (490)
T 2xm6_A 149 GQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLA 226 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999998 88999999999999876 689999999999887 6777777665331110 0000
Q ss_pred --------------hhHHHHHHHhhhhcCchhhhHHHHHHH----HHHHHHHHHhhhhhhhchh-H-------HHHHh--
Q 024419 142 --------------QHLDEFKSEMSEKYGAEECWKHVFSFV----VETMETAVKSWHETSKVDA-K-------VYFLL-- 193 (268)
Q Consensus 142 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~-~-------~~~~~-- 193 (268)
.....+...+...........+.++.. .+++++|+..|+++.+... . +|...
T Consensus 227 ~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~ 306 (490)
T 2xm6_A 227 DMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAE 306 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBT
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCC
Confidence 111111111222222233444555554 6789999999999876543 2 33343
Q ss_pred ---hhhhhhHhhhhHHhcCCccccCccchhHHHHHH---HHH--HHHHHHHHhhhh
Q 024419 194 ---DKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFL---RQY--ADDSFSSAACLV 241 (268)
Q Consensus 194 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--a~~~~~ka~~~~ 241 (268)
++.++|+..|+++++.++.. .....|.++... .++ |...|++|+ +.
T Consensus 307 g~~~~~~~A~~~~~~a~~~~~~~-a~~~lg~~y~~~g~~~~~~~A~~~~~~a~-~~ 360 (490)
T 2xm6_A 307 GVAKNREQAISWYTKSAEQGDAT-AQANLGAIYFRLGSEEEHKKAVEWFRKAA-AK 360 (490)
T ss_dssp TBCCCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHSCCHHHHHHHHHHHHHHH-HT
T ss_pred CCcCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHhCCCcccHHHHHHHHHHHH-HC
Confidence 68999999999999875432 112255555552 256 999999999 76
No 143
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.60 E-value=9e-16 Score=104.96 Aligned_cols=95 Identities=24% Similarity=0.334 Sum_probs=77.2
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------HHHHH
Q 024419 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW------EKGYF 79 (268)
Q Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~ 79 (268)
++.++..+|..++..|++++|+..|+++++.+|+++.++.++|.|+..+|++++|+..|++++.++|++ ..+++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 467788888888888888888888888888888888888888888888888888888888888888887 77888
Q ss_pred HHHHHHHHccCHHHHHHHHHH
Q 024419 80 RKGCILEAMEQYDDALSAFQT 100 (268)
Q Consensus 80 ~la~~~~~~~~~~~A~~~~~~ 100 (268)
.+|.++...|+++.|+..+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 888888888877776655544
No 144
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.59 E-value=2.9e-14 Score=109.47 Aligned_cols=123 Identities=15% Similarity=0.134 Sum_probs=110.6
Q ss_pred hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcC----ChHHHHHHHHHHHhhCCCCHHHHH
Q 024419 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLV----KLNKALADAETTISLNPQWEKGYF 79 (268)
Q Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~----~~~~A~~~~~~al~~~p~~~~~~~ 79 (268)
..++.+++.+|..+...+++++|+..|+++++. .++.+++++|.+|.. + ++++|+.+|++++. +.++.+++
T Consensus 15 ~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~ 89 (212)
T 3rjv_A 15 AGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEI 89 (212)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHH
Confidence 357889999999999999999999999999875 689999999999998 7 99999999999965 67899999
Q ss_pred HHHHHHHH----ccCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHH----HHHHHHhHHH
Q 024419 80 RKGCILEA----MEQYDDALSAFQTALQYNP--QSAEVSRKIKRVSQL----AKDKKRAQEV 131 (268)
Q Consensus 80 ~la~~~~~----~~~~~~A~~~~~~~l~~~p--~~~~~~~~l~~~~~~----~~~~~~a~~~ 131 (268)
.+|.+|.. .+++++|+..|+++++..| +++.++..||.++.. .+++++|..+
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 151 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEY 151 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 99999998 8999999999999999988 459999999999987 5667777655
No 145
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.59 E-value=1.8e-14 Score=119.82 Aligned_cols=223 Identities=13% Similarity=0.046 Sum_probs=135.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh------HHHHHHHHHHHHcCChHHHHHHHHHHHhhC--------CC
Q 024419 8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP------TLFSNRAAAFLHLVKLNKALADAETTISLN--------PQ 73 (268)
Q Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------p~ 73 (268)
.++..+|..+...|++++|+..+++++...|... .++.++|.++...|++++|+..+++++.+. |.
T Consensus 54 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~ 133 (373)
T 1hz4_A 54 VATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPM 133 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcH
Confidence 3556667777777777777777777776654332 235667777777777777777777777653 22
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHH
Q 024419 74 WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS-----AEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFK 148 (268)
Q Consensus 74 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 148 (268)
...++..+|.++...|++++|+..+++++.+.|.. ..++..++.++...|++++|.........+
T Consensus 134 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~---------- 203 (373)
T 1hz4_A 134 HEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENL---------- 203 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----------
Confidence 34556667777777777777777777777766542 345666777777777777765543211000
Q ss_pred HHhhhhcCch--h-----hhHHHHHHHHHHHHHHHHhhhhhhhchhH--------------HHHHhhhhhhhHhhhhHHh
Q 024419 149 SEMSEKYGAE--E-----CWKHVFSFVVETMETAVKSWHETSKVDAK--------------VYFLLDKEKTDTEKYAPIV 207 (268)
Q Consensus 149 ~~~~~~~~~~--~-----~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--------------~~~~~~~~~~a~~~~~~~~ 207 (268)
....+.. . .....+....+++++|...+.+++...|. ++...|+..+|...++.++
T Consensus 204 ---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~ 280 (373)
T 1hz4_A 204 ---LGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELN 280 (373)
T ss_dssp ---HTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---HhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 0000100 0 01122344567888888888877655431 4556788899999998888
Q ss_pred cCCcccc-------CccchhHHHHHHHHH--HHHHHHHHhhhhCCC
Q 024419 208 NVDKAFE-------SPHTHGSCFQFLRQY--ADDSFSSAACLVAPK 244 (268)
Q Consensus 208 ~~~~~~~-------~~~~~~~~~~~~~~~--a~~~~~ka~~~~~p~ 244 (268)
...+... .....+.++...|++ |...+++|+ .+.+.
T Consensus 281 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al-~~~~~ 325 (373)
T 1hz4_A 281 ENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL-KLANR 325 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHHHH
T ss_pred HHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HHhcc
Confidence 7643321 011135555566666 888899988 76654
No 146
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.59 E-value=5.6e-15 Score=129.40 Aligned_cols=120 Identities=5% Similarity=-0.032 Sum_probs=115.9
Q ss_pred chHhHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcC--ChHHHHHHHHHHHhh
Q 024419 3 AEAEEMSLKDKGNEFFKAGN----------YLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLV--KLNKALADAETTISL 70 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~~ 70 (268)
+|++..+|..++.++...|+ +++|++.++++++.+|++..+|.++++++..++ +++++++.+.+++++
T Consensus 59 nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~ 138 (567)
T 1dce_A 59 NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA 138 (567)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhh
Confidence 68899999999999999988 999999999999999999999999999999999 779999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 024419 71 NPQWEKGYFRKGCILEAME-QYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA 122 (268)
Q Consensus 71 ~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 122 (268)
+|++..+|..++.+....| .++++++++.++++.+|.+..+|...+.++..+
T Consensus 139 d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l 191 (567)
T 1dce_A 139 DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL 191 (567)
T ss_dssp CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhh
Confidence 9999999999999999999 999999999999999999999999999998875
No 147
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.59 E-value=1.6e-13 Score=113.96 Aligned_cols=230 Identities=12% Similarity=0.024 Sum_probs=168.0
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh-----HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------
Q 024419 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP-----TLFSNRAAAFLHLVKLNKALADAETTISLNPQW------ 74 (268)
Q Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------ 74 (268)
.++....+|..+...|++++|+..+++++...|.+. .++..+|.++...|++++|+..+++++.+.|..
T Consensus 13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 92 (373)
T 1hz4_A 13 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA 92 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 356778899999999999999999999999887653 368899999999999999999999999986643
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHH
Q 024419 75 EKGYFRKGCILEAMEQYDDALSAFQTALQYN--------PQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDE 146 (268)
Q Consensus 75 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--------p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 146 (268)
..++..+|.++...|++++|+..+++++++. |....++..++.++...|++++|..... ..+...+...
T Consensus 93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~--~al~~~~~~~- 169 (373)
T 1hz4_A 93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASAR--SGIEVLSSYQ- 169 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHH--HHHHHTTTSC-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHH--HHHHHhhccC-
Confidence 2447889999999999999999999999875 3345678889999999999999977632 1111111100
Q ss_pred HHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH-----------------HHHHhhhhhhhHhhhhHHhcC
Q 024419 147 FKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK-----------------VYFLLDKEKTDTEKYAPIVNV 209 (268)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----------------~~~~~~~~~~a~~~~~~~~~~ 209 (268)
...........+.+....+++++|...+.+++.+.+. ++...|+..+|...++.++..
T Consensus 170 -----~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 244 (373)
T 1hz4_A 170 -----PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP 244 (373)
T ss_dssp -----GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC
T ss_pred -----cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC
Confidence 0001122344555677788888888888887654211 244678999999999999887
Q ss_pred CccccCc-----cchhHHHHHHHHH--HHHHHHHHhhhhCCC
Q 024419 210 DKAFESP-----HTHGSCFQFLRQY--ADDSFSSAACLVAPK 244 (268)
Q Consensus 210 ~~~~~~~-----~~~~~~~~~~~~~--a~~~~~ka~~~~~p~ 244 (268)
.+..... ...+..+...+++ |...+++++ ...+.
T Consensus 245 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~-~~~~~ 285 (373)
T 1hz4_A 245 EFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELN-ENARS 285 (373)
T ss_dssp CCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHH
T ss_pred CCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHh
Confidence 5432100 1234455555666 888899888 66543
No 148
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.58 E-value=1.9e-14 Score=126.08 Aligned_cols=164 Identities=13% Similarity=0.111 Sum_probs=130.2
Q ss_pred HHHHHHHHcCCH-HHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCC----------hHHHHHHHHHHHhhCCCCHHHHHH
Q 024419 12 DKGNEFFKAGNY-LKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVK----------LNKALADAETTISLNPQWEKGYFR 80 (268)
Q Consensus 12 ~~g~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~ 80 (268)
.........|++ ++|++.+++++..+|++..+|+.++.++..+|+ +++++..+.++++.+|++..+|..
T Consensus 33 ~~~~~~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~h 112 (567)
T 1dce_A 33 QAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHH 112 (567)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 334445566766 688999999999999999999999999999998 999999999999999999999999
Q ss_pred HHHHHHHcc--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH-HHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCc
Q 024419 81 KGCILEAME--QYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAK-DKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGA 157 (268)
Q Consensus 81 la~~~~~~~--~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (268)
++.++...+ +++++++.+.++++++|.|..+|...+.+....+ .++++.+... ..+...+ ....
T Consensus 113 R~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~--~~I~~~p-----------~n~s 179 (567)
T 1dce_A 113 RCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD--SLITRNF-----------SNYS 179 (567)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHH--TTTTTTC-----------CCHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHH--HHHHHCC-----------CCcc
Confidence 999999999 7799999999999999999999999999998887 6666654421 1111111 1111
Q ss_pred hhhhHHHHHHH--------------HHHHHHHHHhhhhhhhchhH
Q 024419 158 EECWKHVFSFV--------------VETMETAVKSWHETSKVDAK 188 (268)
Q Consensus 158 ~~~~~~~~~~~--------------~~~~~~A~~~~~~~~~~~~~ 188 (268)
++..++.+... .+.++++++.+.+++.++|.
T Consensus 180 aW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~ 224 (567)
T 1dce_A 180 SWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN 224 (567)
T ss_dssp HHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCC
Confidence 22222222222 37788899999999988887
No 149
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.58 E-value=4.7e-14 Score=100.09 Aligned_cols=97 Identities=16% Similarity=0.108 Sum_probs=91.7
Q ss_pred hcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q 024419 35 KQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRK 114 (268)
Q Consensus 35 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 114 (268)
..+|.++..++.+|.++...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..++++++++|+++.++..
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF 82 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHH
Q 024419 115 IKRVSQLAKDKKRAQEV 131 (268)
Q Consensus 115 l~~~~~~~~~~~~a~~~ 131 (268)
+|.++...|++++|...
T Consensus 83 l~~~~~~~~~~~~A~~~ 99 (137)
T 3q49_B 83 LGQCQLEMESYDEAIAN 99 (137)
T ss_dssp HHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHH
Confidence 99999999999999765
No 150
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.58 E-value=5.5e-14 Score=92.36 Aligned_cols=86 Identities=20% Similarity=0.348 Sum_probs=51.7
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 82 (268)
+|.++..++.+|..+...|++++|+..|++++..+|.+..++..+|.++...|++++|+..+++++.++|+++.++..+|
T Consensus 5 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~ 84 (91)
T 1na3_A 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG 84 (91)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 34455556666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHc
Q 024419 83 CILEAM 88 (268)
Q Consensus 83 ~~~~~~ 88 (268)
.++...
T Consensus 85 ~~~~~~ 90 (91)
T 1na3_A 85 NAKQKQ 90 (91)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 555443
No 151
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.58 E-value=1.8e-13 Score=100.12 Aligned_cols=133 Identities=14% Similarity=0.065 Sum_probs=105.7
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024419 40 NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVS 119 (268)
Q Consensus 40 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 119 (268)
.+..+..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++++|+++.++..+|.++
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchh--hhHHHHHHHHHHHHHHHHhhhhhhhc
Q 024419 120 QLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEE--CWKHVFSFVVETMETAVKSWHETSKV 185 (268)
Q Consensus 120 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~A~~~~~~~~~~ 185 (268)
...|++++|..... ..+...+. ..... ..........+++++|+..+.+...+
T Consensus 92 ~~~~~~~~A~~~~~--~a~~~~p~-----------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 92 MALGKFRAALRDYE--TVVKVKPH-----------DKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHTTCHHHHHHHHH--HHHHHSTT-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHH--HHHHhCCC-----------CHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 99999999976632 11111111 11111 12222344567777777777765543
No 152
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.56 E-value=7.1e-15 Score=111.52 Aligned_cols=122 Identities=9% Similarity=0.049 Sum_probs=101.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH--------------
Q 024419 10 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWE-------------- 75 (268)
Q Consensus 10 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-------------- 75 (268)
....+......|++++|.+.+.......+..+..+..+|.+++..|++++|+..|++++.+.|.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 86 (198)
T 2fbn_A 7 HHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNI 86 (198)
T ss_dssp ---------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHH
T ss_pred ccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHH
Confidence 334455667778888888888887777777889999999999999999999999999999999887
Q ss_pred --HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHH
Q 024419 76 --KGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV 131 (268)
Q Consensus 76 --~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 131 (268)
.++..+|.++...|++++|+..++++++++|+++.++..+|.++...|++++|...
T Consensus 87 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~ 144 (198)
T 2fbn_A 87 EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKEN 144 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999665
No 153
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.56 E-value=1.3e-13 Score=111.16 Aligned_cols=175 Identities=11% Similarity=0.021 Sum_probs=131.2
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChH------HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-----
Q 024419 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPT------LFSNRAAAFLHLVKLNKALADAETTISLNPQW----- 74 (268)
Q Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----- 74 (268)
....+...+..++..|+|++|+..++++++..+.++. .+..+|.++...+++++|+..|++++.+.+..
T Consensus 74 ~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~ 153 (293)
T 3u3w_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTH
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHH
Confidence 3455667789999999999999999999998877654 34468999999999999999999999975442
Q ss_pred -HHHHHHHHHHHHHccCHHHHHHHHHHHHhh-------CCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHH
Q 024419 75 -EKGYFRKGCILEAMEQYDDALSAFQTALQY-------NPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDE 146 (268)
Q Consensus 75 -~~~~~~la~~~~~~~~~~~A~~~~~~~l~~-------~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 146 (268)
..++..+|.+|...|++++|+.+|+++++. .|....++..+|.++...|++++|..... ..+......
T Consensus 154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~--~al~~~~~~-- 229 (293)
T 3u3w_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVN--KAIEISCRI-- 229 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH--HHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHH--HHHHHHHHc--
Confidence 347999999999999999999999999953 22235688999999999999999977632 111111100
Q ss_pred HHHHhhhhcCchhhhHHHHHHHHH-HHHHHHHhhhhhhhchh
Q 024419 147 FKSEMSEKYGAEECWKHVFSFVVE-TMETAVKSWHETSKVDA 187 (268)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~~ 187 (268)
......+..+...|..+..++ .+++|+..|.+++.+..
T Consensus 230 ---~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 230 ---NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp ---TBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred ---CcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 001112344566677777777 46888888888876544
No 154
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.56 E-value=1.4e-13 Score=111.70 Aligned_cols=186 Identities=11% Similarity=0.077 Sum_probs=133.5
Q ss_pred cCCHHHHHHHHHHHHhcCCCC-----------hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------HHHHHHHH
Q 024419 20 AGNYLKAAALYTQAIKQDPSN-----------PTLFSNRAAAFLHLVKLNKALADAETTISLNPQW------EKGYFRKG 82 (268)
Q Consensus 20 ~~~~~~A~~~~~~al~~~p~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la 82 (268)
.|++++|.++++++.+..+.. ...+...|.+|...|++++|+.+|.+++.+.+.. ..++..+|
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg 83 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAG 83 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345555555555555432210 1234445789999999999999999999986543 56899999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcC
Q 024419 83 CILEAMEQYDDALSAFQTALQYNPQS------AEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYG 156 (268)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (268)
.+|..+|++++|+.+|++++++.+.. ..++..+|.++.. |++++|+.... ..+...+..... ....
T Consensus 84 ~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~--~Al~~~~~~~~~-----~~~~ 155 (307)
T 2ifu_A 84 MMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQ--QAAAVFENEERL-----RQAA 155 (307)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHH--HHHHHHHHTTCH-----HHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHH--HHHHHHHhCCCh-----hHHH
Confidence 99999999999999999999985432 4678899999988 99999976642 222221111000 0012
Q ss_pred chhhhHHHHHHHHHHHHHHHHhhhhhhhchhH----------------HHHHhhhhhhhHhhhhHHhcCCcccc
Q 024419 157 AEECWKHVFSFVVETMETAVKSWHETSKVDAK----------------VYFLLDKEKTDTEKYAPIVNVDKAFE 214 (268)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------------~~~~~~~~~~a~~~~~~~~~~~~~~~ 214 (268)
..+...+.++..++++++|+..|++++.+.|. ++..+|++.+|+..|++++ ++|.+.
T Consensus 156 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~ 228 (307)
T 2ifu_A 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFS 228 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTST
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCC
Confidence 33455566777789999999999999887654 3445699999999999999 988764
No 155
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.56 E-value=3.9e-15 Score=127.50 Aligned_cols=144 Identities=9% Similarity=0.080 Sum_probs=118.5
Q ss_pred CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHH
Q 024419 21 GNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW---------------EKGYFRKGCIL 85 (268)
Q Consensus 21 ~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~ 85 (268)
+++++|+..|++++..+|..+..+.++|.+++..|+|++|+..|++++.++|.+ ..+|.++|.++
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 327 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY 327 (457)
T ss_dssp EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888888889999999999999999999999999999999999999998 79999999999
Q ss_pred HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHH
Q 024419 86 EAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVF 165 (268)
Q Consensus 86 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (268)
..+|++++|+..|+++++++|+++.+++.+|.++..++++++|..... ..+. +.+.....+...+.+
T Consensus 328 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~--~al~-----------l~P~~~~a~~~l~~~ 394 (457)
T 1kt0_A 328 LKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFE--KVLE-----------VNPQNKAARLQISMC 394 (457)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHH--HHHT-----------TC----CHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHH--HHHH-----------hCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999976531 1111 222333445555555
Q ss_pred HHHHHHHHHHHH
Q 024419 166 SFVVETMETAVK 177 (268)
Q Consensus 166 ~~~~~~~~~A~~ 177 (268)
...+++++++.+
T Consensus 395 ~~~~~~~~~a~~ 406 (457)
T 1kt0_A 395 QKKAKEHNERDR 406 (457)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666665543
No 156
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.55 E-value=5.7e-14 Score=101.28 Aligned_cols=91 Identities=15% Similarity=0.089 Sum_probs=86.1
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-------CHH-----HHHHHHHHHHHccCHHHHHHHHHHHHhh----
Q 024419 41 PTLFSNRAAAFLHLVKLNKALADAETTISLNPQ-------WEK-----GYFRKGCILEAMEQYDDALSAFQTALQY---- 104 (268)
Q Consensus 41 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-------~~~-----~~~~la~~~~~~~~~~~A~~~~~~~l~~---- 104 (268)
+..+.++|.+++..|+|++|+..|+++|+++|+ +.. +|.++|.++..+|+|++|+.+|+++|++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 467899999999999999999999999999999 544 9999999999999999999999999999
Q ss_pred ---CCCCHHHH----HHHHHHHHHHHHHHHhHHH
Q 024419 105 ---NPQSAEVS----RKIKRVSQLAKDKKRAQEV 131 (268)
Q Consensus 105 ---~p~~~~~~----~~l~~~~~~~~~~~~a~~~ 131 (268)
+|++..+| ++.|.++..+|++++|+..
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~ 124 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPE 124 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHH
Confidence 99999999 9999999999999999665
No 157
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.55 E-value=1.8e-12 Score=105.76 Aligned_cols=171 Identities=8% Similarity=0.046 Sum_probs=132.2
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcC-ChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024419 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLV-KLNKALADAETTISLNPQWEKGYFRKGC 83 (268)
Q Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~ 83 (268)
.-..++-.........+..++|++.+.++|.++|++..+|+.++.++..+| .+++++..+.+++..+|++..+|..++.
T Consensus 52 ~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~w 131 (349)
T 3q7a_A 52 EYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLL 131 (349)
T ss_dssp HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 334444444455555566689999999999999999999999999999999 5999999999999999999999999999
Q ss_pred HHHHc-c-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH--------HhHHHHhhhhhHHHhhhHHHHHHHhhh
Q 024419 84 ILEAM-E-QYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKK--------RAQEVENIRSNVDMVQHLDEFKSEMSE 153 (268)
Q Consensus 84 ~~~~~-~-~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (268)
++... + +++++++.+.++++.+|.|..+|...+.+....+.++ ++.+. ....+...+
T Consensus 132 lL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~--~~k~I~~dp----------- 198 (349)
T 3q7a_A 132 LLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDW--CNEMLRVDG----------- 198 (349)
T ss_dssp HHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH--HHHHHHHCT-----------
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHH--HHHHHHhCC-----------
Confidence 99998 8 9999999999999999999999999999999888776 33322 111121111
Q ss_pred hcCchhhhHHHHHHH-------HHHHHHHHHhhhhhhhchhH
Q 024419 154 KYGAEECWKHVFSFV-------VETMETAVKSWHETSKVDAK 188 (268)
Q Consensus 154 ~~~~~~~~~~~~~~~-------~~~~~~A~~~~~~~~~~~~~ 188 (268)
....++..++.+... ...++++++.+.+++.++|.
T Consensus 199 ~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~ 240 (349)
T 3q7a_A 199 RNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPH 240 (349)
T ss_dssp TCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTT
T ss_pred CCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCC
Confidence 111122222222221 23478899999999999997
No 158
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.53 E-value=3.2e-14 Score=96.91 Aligned_cols=97 Identities=16% Similarity=0.211 Sum_probs=92.9
Q ss_pred cCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC--CHHHHH
Q 024419 36 QDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQ--SAEVSR 113 (268)
Q Consensus 36 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~ 113 (268)
++|++..++..+|.++...|++++|+..|++++..+|.+..+++.+|.++...|++++|+..|+++++.+|+ +..++.
T Consensus 1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 80 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWA 80 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHH
Confidence 378899999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHH-HHHHHhHHHH
Q 024419 114 KIKRVSQLA-KDKKRAQEVE 132 (268)
Q Consensus 114 ~l~~~~~~~-~~~~~a~~~~ 132 (268)
.++.++... |++++|.+..
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~ 100 (112)
T 2kck_A 81 AKADALRYIEGKEVEAEIAE 100 (112)
T ss_dssp HHHHHHTTCSSCSHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 999999999 9999997663
No 159
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.52 E-value=3.1e-13 Score=94.91 Aligned_cols=96 Identities=17% Similarity=0.215 Sum_probs=91.6
Q ss_pred CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419 37 DPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIK 116 (268)
Q Consensus 37 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~ 116 (268)
.|.+..+++.+|.++...|++++|+..|++++..+|++..+++.+|.++...|++++|+..++++++.+|+++.++..+|
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 46678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHH
Q 024419 117 RVSQLAKDKKRAQEVE 132 (268)
Q Consensus 117 ~~~~~~~~~~~a~~~~ 132 (268)
.++...|++++|....
T Consensus 92 ~~~~~~~~~~~A~~~~ 107 (133)
T 2lni_A 92 AALEAMKDYTKAMDVY 107 (133)
T ss_dssp HHHHHTTCHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHH
Confidence 9999999999997663
No 160
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.52 E-value=1.2e-13 Score=100.19 Aligned_cols=128 Identities=16% Similarity=0.216 Sum_probs=111.4
Q ss_pred hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh------HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---
Q 024419 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP------TLFSNRAAAFLHLVKLNKALADAETTISLNPQW--- 74 (268)
Q Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--- 74 (268)
+..+.++..+|..+...|++++|+.++++++...+... .++..+|.++...|++++|+..+++++.+.+..
T Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 85 (164)
T 3ro3_A 6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR 85 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Confidence 45678899999999999999999999999999865432 589999999999999999999999999886543
Q ss_pred ---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHHHHHHHhHHH
Q 024419 75 ---EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQ------SAEVSRKIKRVSQLAKDKKRAQEV 131 (268)
Q Consensus 75 ---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~------~~~~~~~l~~~~~~~~~~~~a~~~ 131 (268)
..++..+|.++...|++++|+..+++++++.+. ...++..++.++...|++++|...
T Consensus 86 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 151 (164)
T 3ro3_A 86 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 151 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHH
Confidence 678999999999999999999999999987432 256788899999999999988665
No 161
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.51 E-value=7.3e-15 Score=116.24 Aligned_cols=166 Identities=14% Similarity=0.070 Sum_probs=129.7
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHH-------HHHHHHcCChHHHHHHHHHHHhhCCCCHH-
Q 024419 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNR-------AAAFLHLVKLNKALADAETTISLNPQWEK- 76 (268)
Q Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~-------a~~~~~~~~~~~A~~~~~~al~~~p~~~~- 76 (268)
++...++..|.-+ ..+++..|.+.|.+++..+|+..++|.++ +.++..+++..+++..+++.+.+.|....
T Consensus 5 ~~~~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a 83 (282)
T 4f3v_A 5 DRLASLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNA 83 (282)
T ss_dssp HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCC
T ss_pred HHHHHHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhh
Confidence 3456778888876 68999999999999999999999999999 89999999999999999999999887543
Q ss_pred --------------------HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhh
Q 024419 77 --------------------GYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRS 136 (268)
Q Consensus 77 --------------------~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 136 (268)
++..+|.++...|+|++|.+.|..++...|++. +.+.++.++...+++++|+.... .
T Consensus 84 ~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~--~ 160 (282)
T 4f3v_A 84 RIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVK--S 160 (282)
T ss_dssp EEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHT--T
T ss_pred hhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHH--H
Confidence 444588999999999999999999999999988 99999999999999999977642 1
Q ss_pred hHHHhhhHHHHHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhh
Q 024419 137 NVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETS 183 (268)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 183 (268)
....... .. ...+....|.....++++++|+..|.+++
T Consensus 161 a~~~~d~---~~------~~~a~~~LG~al~~LG~~~eAl~~l~~a~ 198 (282)
T 4f3v_A 161 AGKWPDK---FL------AGAAGVAHGVAAANLALFTEAERRLTEAN 198 (282)
T ss_dssp GGGCSCH---HH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhccCCc---cc------HHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 1000000 00 01234455555555666666666666654
No 162
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.51 E-value=1.1e-13 Score=94.42 Aligned_cols=90 Identities=14% Similarity=0.203 Sum_probs=84.2
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC------HHHHH
Q 024419 40 NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS------AEVSR 113 (268)
Q Consensus 40 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~ 113 (268)
++.+++.+|.++...|++++|+..|++++.++|+++.+++.+|.++..+|++++|+..|+++++++|++ ..++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999999999999999999 88899
Q ss_pred HHHHHHHHHHHHHHhH
Q 024419 114 KIKRVSQLAKDKKRAQ 129 (268)
Q Consensus 114 ~l~~~~~~~~~~~~a~ 129 (268)
.++.++...|.++.|.
T Consensus 83 ~~~~~~~~~~~~~~a~ 98 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPV 98 (111)
T ss_dssp HHHHHHHHHHCCCCCS
T ss_pred HHHHHHHHHHhHhhhH
Confidence 9999988888766653
No 163
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.51 E-value=2.4e-13 Score=89.24 Aligned_cols=84 Identities=19% Similarity=0.374 Sum_probs=79.9
Q ss_pred CChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024419 39 SNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRV 118 (268)
Q Consensus 39 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 118 (268)
.++.+++.+|.++...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|+++++++|+++.++..++.+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHH
Q 024419 119 SQLA 122 (268)
Q Consensus 119 ~~~~ 122 (268)
+...
T Consensus 87 ~~~~ 90 (91)
T 1na3_A 87 KQKQ 90 (91)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7654
No 164
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.50 E-value=4.8e-13 Score=101.17 Aligned_cols=164 Identities=12% Similarity=0.079 Sum_probs=111.0
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHh------hCCCCHHHHHHHHHHHHHccC
Q 024419 17 FFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS------LNPQWEKGYFRKGCILEAMEQ 90 (268)
Q Consensus 17 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~------~~p~~~~~~~~la~~~~~~~~ 90 (268)
++..|++++|.+.++......+....++..+|.++...|++++|+..+++++. ..|....++..+|.++...|+
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 45789999999966555553336778999999999999999999999999998 344557889999999999999
Q ss_pred HHHHHHHHHHHHhh---CCCC----HHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHH
Q 024419 91 YDDALSAFQTALQY---NPQS----AEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKH 163 (268)
Q Consensus 91 ~~~A~~~~~~~l~~---~p~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (268)
+++|+..+++++++ .|++ ..++..+|.++...|++++|....... +......... ..........+
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a--l~~~~~~~~~-----~~~~~~~~~la 154 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKS--LVYAQQADDQ-----VAIACAFRGLG 154 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH--HHHHHHTTCH-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH--HHHHHhccch-----HHHHHHHHHHH
Confidence 99999999999988 4433 457888999999999999987663211 1110000000 00011223444
Q ss_pred HHHHHHHHHHHHHHhhhhhhhchh
Q 024419 164 VFSFVVETMETAVKSWHETSKVDA 187 (268)
Q Consensus 164 ~~~~~~~~~~~A~~~~~~~~~~~~ 187 (268)
.++...+++++|+..+.+++.+..
T Consensus 155 ~~~~~~g~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 155 DLAQQEKNLLEAQQHWLRARDIFA 178 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHHHHHH
Confidence 555566677777777776665543
No 165
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.50 E-value=5.6e-14 Score=94.09 Aligned_cols=92 Identities=17% Similarity=0.206 Sum_probs=78.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 024419 10 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPT-LFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAM 88 (268)
Q Consensus 10 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 88 (268)
.+.+|..++..|++++|+..|+++++.+|++.. +++.+|.++..+|++++|+..|++++.++|++..++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------- 74 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence 356888889999999999999999999999988 99999999999999999999999999999998887744
Q ss_pred cCHHHHHHHHHHHHhhCCCCH
Q 024419 89 EQYDDALSAFQTALQYNPQSA 109 (268)
Q Consensus 89 ~~~~~A~~~~~~~l~~~p~~~ 109 (268)
+.+.+++..|++++..+|+++
T Consensus 75 ~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHHHHHhccCcccc
Confidence 667778888888888877654
No 166
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.49 E-value=9.2e-13 Score=106.07 Aligned_cols=125 Identities=10% Similarity=0.025 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------hHHHHHHHHHHHHcCChHHHHHHHHHHH---hhCCCCH--
Q 024419 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN------PTLFSNRAAAFLHLVKLNKALADAETTI---SLNPQWE-- 75 (268)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al---~~~p~~~-- 75 (268)
...+..+|..+...|++++|+.+|++++...+.. ..++.++|.+|..+|++++|+..|++++ ...|++.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~ 194 (293)
T 2qfc_A 115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEF 194 (293)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccc
Confidence 3456678889999999999999999999876544 5689999999999999999999999999 5566643
Q ss_pred --HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHHHHHHHh-HHH
Q 024419 76 --KGYFRKGCILEAMEQYDDALSAFQTALQYNPQ------SAEVSRKIKRVSQLAKDKKRA-QEV 131 (268)
Q Consensus 76 --~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~------~~~~~~~l~~~~~~~~~~~~a-~~~ 131 (268)
.+++++|.+|..+|++++|+..+++++++.++ ...++..+|.++..+|++++| ...
T Consensus 195 ~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~ 259 (293)
T 2qfc_A 195 DVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDA 259 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred hHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 68999999999999999999999999988643 277899999999999999998 553
No 167
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.49 E-value=2.9e-13 Score=94.58 Aligned_cols=97 Identities=11% Similarity=0.177 Sum_probs=91.5
Q ss_pred hcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q 024419 35 KQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRK 114 (268)
Q Consensus 35 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 114 (268)
+.+|.+..++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++..+|+++.++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 85 (131)
T 2vyi_A 6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGR 85 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHH
Confidence 34566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHH
Q 024419 115 IKRVSQLAKDKKRAQEV 131 (268)
Q Consensus 115 l~~~~~~~~~~~~a~~~ 131 (268)
+|.++...|++++|...
T Consensus 86 ~~~~~~~~~~~~~A~~~ 102 (131)
T 2vyi_A 86 MGLALSSLNKHVEAVAY 102 (131)
T ss_dssp HHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHH
Confidence 99999999999999765
No 168
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.48 E-value=3.2e-13 Score=97.16 Aligned_cols=101 Identities=18% Similarity=0.214 Sum_probs=86.5
Q ss_pred HHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCH----------HHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 024419 52 LHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQY----------DDALSAFQTALQYNPQSAEVSRKIKRVSQL 121 (268)
Q Consensus 52 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~----------~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 121 (268)
.+.+.+++|+..++++++++|+++.+|+++|.++...+++ ++|+..|+++++++|++..+|+.+|.++..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3567789999999999999999999999999999999875 599999999999999999999999999987
Q ss_pred HHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH
Q 024419 122 AKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK 188 (268)
Q Consensus 122 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 188 (268)
+|.+. +.. ....+++++|+.+|.++++++|+
T Consensus 93 lg~l~-------------------------------P~~-----~~a~g~~~eA~~~~~kAl~l~P~ 123 (158)
T 1zu2_A 93 FAFLT-------------------------------PDE-----TEAKHNFDLATQFFQQAVDEQPD 123 (158)
T ss_dssp HHHHC-------------------------------CCH-----HHHHHHHHHHHHHHHHHHHHCTT
T ss_pred hcccC-------------------------------cch-----hhhhccHHHHHHHHHHHHHhCCC
Confidence 76530 000 11248899999999999999987
No 169
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.48 E-value=6.1e-13 Score=89.41 Aligned_cols=83 Identities=19% Similarity=0.354 Sum_probs=65.7
Q ss_pred cCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC--HHHHH
Q 024419 36 QDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS--AEVSR 113 (268)
Q Consensus 36 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~--~~~~~ 113 (268)
.+|+++.+++.+|.++..+|++++|+..|+++++++|+++.+|+.+|.++...|++++|+..|++++++.|.+ .....
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~ 81 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLS 81 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHH
Confidence 4788888999999999999999999999999999999988899999999999999999999999998887643 33333
Q ss_pred HHHHH
Q 024419 114 KIKRV 118 (268)
Q Consensus 114 ~l~~~ 118 (268)
.+..+
T Consensus 82 ~l~~~ 86 (100)
T 3ma5_A 82 ELQDA 86 (100)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44333
No 170
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.48 E-value=4.7e-13 Score=98.04 Aligned_cols=92 Identities=8% Similarity=0.026 Sum_probs=87.5
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHHHhh------------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 024419 40 NPTLFSNRAAAFLHLVKLNKALADAETTISL------------------NPQWEKGYFRKGCILEAMEQYDDALSAFQTA 101 (268)
Q Consensus 40 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 101 (268)
.+..+..+|..++..|+|++|+..|.+++.+ +|.++.++.++|.++..+|++++|+..++++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3578899999999999999999999999999 7778899999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHHHHHHHhHHH
Q 024419 102 LQYNPQSAEVSRKIKRVSQLAKDKKRAQEV 131 (268)
Q Consensus 102 l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 131 (268)
++++|+++.++..+|.++..+|++++|...
T Consensus 90 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~ 119 (162)
T 3rkv_A 90 LKREETNEKALFRRAKARIAAWKLDEAEED 119 (162)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhcCCcchHHHHHHHHHHHHHhcHHHHHHH
Confidence 999999999999999999999999999765
No 171
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.47 E-value=1.5e-12 Score=106.25 Aligned_cols=122 Identities=6% Similarity=-0.041 Sum_probs=116.0
Q ss_pred chHhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc-C-ChHHHHHHHHHHHhhCCCCHHHHH
Q 024419 3 AEAEEMSLKDKGNEFFKAG-NYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHL-V-KLNKALADAETTISLNPQWEKGYF 79 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~-~-~~~~A~~~~~~al~~~p~~~~~~~ 79 (268)
+|++..+|..++.++...| .+++++..+..++..+|++..+|..++.++..+ + ++++++..+.+++..+|+|..+|.
T Consensus 84 nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~ 163 (349)
T 3q7a_A 84 NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWA 163 (349)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHH
T ss_pred CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHH
Confidence 6889999999999999999 599999999999999999999999999999998 8 999999999999999999999999
Q ss_pred HHHHHHHHccCHH--------HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 024419 80 RKGCILEAMEQYD--------DALSAFQTALQYNPQSAEVSRKIKRVSQLAKD 124 (268)
Q Consensus 80 ~la~~~~~~~~~~--------~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~ 124 (268)
.++.++...|.++ ++++.+.++++.+|.|..+|...+.+....+.
T Consensus 164 ~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~ 216 (349)
T 3q7a_A 164 YLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPG 216 (349)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTT
T ss_pred HHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc
Confidence 9999999999888 99999999999999999999999999877654
No 172
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.47 E-value=4.2e-13 Score=101.49 Aligned_cols=127 Identities=12% Similarity=0.050 Sum_probs=110.6
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------cCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh---CCC--
Q 024419 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIK------QDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL---NPQ-- 73 (268)
Q Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~------~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~p~-- 73 (268)
..+.++..+|.++...|++++|+..+++++. ..|....++.++|.++..+|++++|+..+++++.+ .|+
T Consensus 24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 103 (203)
T 3gw4_A 24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDP 103 (203)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccH
Confidence 5688999999999999999999999999999 45556789999999999999999999999999998 443
Q ss_pred --CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC--CC----HHHHHHHHHHHHHHHHHHHhHHH
Q 024419 74 --WEKGYFRKGCILEAMEQYDDALSAFQTALQYNP--QS----AEVSRKIKRVSQLAKDKKRAQEV 131 (268)
Q Consensus 74 --~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p--~~----~~~~~~l~~~~~~~~~~~~a~~~ 131 (268)
...++..+|.++...|++++|+..+++++.+.+ .+ ..++..+|.++...|++++|...
T Consensus 104 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 169 (203)
T 3gw4_A 104 LAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQH 169 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 356799999999999999999999999997643 22 23568899999999999999765
No 173
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.46 E-value=1.4e-12 Score=121.10 Aligned_cols=206 Identities=11% Similarity=0.018 Sum_probs=119.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhc----------------------CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 024419 13 KGNEFFKAGNYLKAAALYTQAIKQ----------------------DPSNPTLFSNRAAAFLHLVKLNKALADAETTISL 70 (268)
Q Consensus 13 ~g~~~~~~~~~~~A~~~~~~al~~----------------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 70 (268)
.|.++...|.+++|..+|+++-.. ..+++.+|..+|.++...|++++|+..|.++
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA--- 1131 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA--- 1131 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc---
Confidence 477778888888887777775210 1344667777777777777777777777664
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHH
Q 024419 71 NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSE 150 (268)
Q Consensus 71 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 150 (268)
+++..|..+|.++.+.|++++|+++|..+.+..|+. .+...++.++..+++++....+..
T Consensus 1132 --dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~-~Idt~LafaYAKl~rleele~fI~----------------- 1191 (1630)
T 1xi4_A 1132 --DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES-YVETELIFALAKTNRLAELEEFIN----------------- 1191 (1630)
T ss_pred --CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc-cccHHHHHHHHhhcCHHHHHHHHh-----------------
Confidence 666677777777777777777777777777666432 122235555555555543322210
Q ss_pred hhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchh--HHHHHhhhhhhhHhhhhHHhcCCc-----------------
Q 024419 151 MSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDA--KVYFLLDKEKTDTEKYAPIVNVDK----------------- 211 (268)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~~----------------- 211 (268)
..........|......+++++|+..|.++..... ..+..+|+++.|++.++++.+..+
T Consensus 1192 --~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA 1269 (1630)
T 1xi4_A 1192 --GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLA 1269 (1630)
T ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHH
Confidence 00001112234445556666666666666532221 145555666666666666654432
Q ss_pred -----------cccCccchhHHHHHHHHH--HHHHHHHHhhhhCCCCc
Q 024419 212 -----------AFESPHTHGSCFQFLRQY--ADDSFSSAACLVAPKSI 246 (268)
Q Consensus 212 -----------~~~~~~~~~~~~~~~~~~--a~~~~~ka~~~~~p~~~ 246 (268)
+. ....+.+|...|.| |...+++++ .++|.+.
T Consensus 1270 ~~cgl~Iiv~~de--Leeli~yYe~~G~feEAI~LlE~aL-~LeraH~ 1314 (1630)
T 1xi4_A 1270 QMCGLHIVVHADE--LEELINYYQDRGYFEELITMLEAAL-GLERAHM 1314 (1630)
T ss_pred HHHHHhhhcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHh-ccChhHh
Confidence 11 11234455555666 888889999 8887764
No 174
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.46 E-value=5.9e-12 Score=107.61 Aligned_cols=215 Identities=7% Similarity=-0.015 Sum_probs=147.1
Q ss_pred HhHHHHHHHHHHHHHcCCHH----HHHHHHHHHHhcCCCChHHHHHHHHHHHHcC---ChHHHHHHHHHHHhhCCCCHHH
Q 024419 5 AEEMSLKDKGNEFFKAGNYL----KAAALYTQAIKQDPSNPTLFSNRAAAFLHLV---KLNKALADAETTISLNPQWEKG 77 (268)
Q Consensus 5 ~~~~~~~~~g~~~~~~~~~~----~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~p~~~~~ 77 (268)
.++.+.+.+|..+...+.++ +|..+++.+...+| .+++.+|.+|...| ++++|+..|+++....|.....
T Consensus 139 g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~---~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~ 215 (452)
T 3e4b_A 139 GYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTD---ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQR 215 (452)
T ss_dssp TCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCT---THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred CCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCH---HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHH
Confidence 34667788888888888544 44444555555444 49999999999999 9999999999999999999988
Q ss_pred HHHHHHHHHHc----cCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-H--HHHHHHHHhHHHHhhhhhHHHhhhHHHHHHH
Q 024419 78 YFRKGCILEAM----EQYDDALSAFQTALQYNPQSAEVSRKIKRV-S--QLAKDKKRAQEVENIRSNVDMVQHLDEFKSE 150 (268)
Q Consensus 78 ~~~la~~~~~~----~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 150 (268)
++.+|.+|... +++++|+..|+++. |+++.++..+|.+ + ...+++++|..... ..
T Consensus 216 ~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~---------------~A 277 (452)
T 3e4b_A 216 VDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLD---------------NG 277 (452)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHH---------------HH
T ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH---------------HH
Confidence 89999999766 79999999999988 8999999999998 4 34566677755531 11
Q ss_pred hhhhcCchhhhHHHHHHHHH-----HHHHHHHhhhhhhhchhHHHH------Hhh-----hhhhhHhhhhHHhcCCcccc
Q 024419 151 MSEKYGAEECWKHVFSFVVE-----TMETAVKSWHETSKVDAKVYF------LLD-----KEKTDTEKYAPIVNVDKAFE 214 (268)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~-----~~~~A~~~~~~~~~~~~~~~~------~~~-----~~~~a~~~~~~~~~~~~~~~ 214 (268)
............+.++. .+ ++++|+..|+++..-++...+ ..| +..+|+..|+++...+...
T Consensus 278 a~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~- 355 (452)
T 3e4b_A 278 RAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAVGREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNS- 355 (452)
T ss_dssp HHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTTTTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTT-
T ss_pred HHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHH-
Confidence 11222233344454444 34 889999999998833333222 222 7888999999988863211
Q ss_pred CccchhHHHHH----HHHH--HHHHHHHHhhhhCC
Q 024419 215 SPHTHGSCFQF----LRQY--ADDSFSSAACLVAP 243 (268)
Q Consensus 215 ~~~~~~~~~~~----~~~~--a~~~~~ka~~~~~p 243 (268)
....+|.+|.. ..++ |..+|++|. ...+
T Consensus 356 A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~-~~g~ 389 (452)
T 3e4b_A 356 ADFAIAQLFSQGKGTKPDPLNAYVFSQLAK-AQDT 389 (452)
T ss_dssp HHHHHHHHHHSCTTBCCCHHHHHHHHHHHH-TTCC
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHH-HCCC
Confidence 01123444332 1133 888888888 5544
No 175
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.46 E-value=3.7e-13 Score=108.41 Aligned_cols=123 Identities=10% Similarity=0.014 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------hHHHHHHHHHHHHcCChHHHHHHHHHHHhh-------CCCCH
Q 024419 9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN------PTLFSNRAAAFLHLVKLNKALADAETTISL-------NPQWE 75 (268)
Q Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-------~p~~~ 75 (268)
.+..+|..+...+++++|+.+|++++...+.. ..++.++|.+|..+|++++|+.+|+++++. .|..+
T Consensus 117 ~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (293)
T 3u3w_A 117 WQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDV 196 (293)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHH
Confidence 44568999999999999999999999975543 347999999999999999999999999953 22335
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHH-HHHhHHH
Q 024419 76 KGYFRKGCILEAMEQYDDALSAFQTALQYNPQS------AEVSRKIKRVSQLAKD-KKRAQEV 131 (268)
Q Consensus 76 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~l~~~~~~~~~-~~~a~~~ 131 (268)
.+++++|.+|..+|++++|+..+++++++.+.. ..++..+|.++..+|+ +++|...
T Consensus 197 ~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~ 259 (293)
T 3u3w_A 197 KVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDA 259 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 689999999999999999999999999987544 7899999999999994 6888665
No 176
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.45 E-value=1.7e-12 Score=88.96 Aligned_cols=92 Identities=12% Similarity=0.143 Sum_probs=88.3
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024419 40 NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVS 119 (268)
Q Consensus 40 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 119 (268)
.+..++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHH
Q 024419 120 QLAKDKKRAQEV 131 (268)
Q Consensus 120 ~~~~~~~~a~~~ 131 (268)
...|++++|...
T Consensus 83 ~~~~~~~~A~~~ 94 (118)
T 1elw_A 83 EFLNRFEEAKRT 94 (118)
T ss_dssp HHTTCHHHHHHH
T ss_pred HHHhhHHHHHHH
Confidence 999999999765
No 177
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.44 E-value=4.7e-12 Score=87.57 Aligned_cols=96 Identities=22% Similarity=0.348 Sum_probs=88.6
Q ss_pred cCCCC-hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q 024419 36 QDPSN-PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRK 114 (268)
Q Consensus 36 ~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 114 (268)
.+|.. ..+++.+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+..+++++..+|+++.++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 82 (125)
T 1na0_A 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYN 82 (125)
T ss_dssp ----CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHH
Confidence 35655 78999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHH
Q 024419 115 IKRVSQLAKDKKRAQEV 131 (268)
Q Consensus 115 l~~~~~~~~~~~~a~~~ 131 (268)
++.++...+++++|...
T Consensus 83 la~~~~~~~~~~~A~~~ 99 (125)
T 1na0_A 83 LGNAYYKQGDYDEAIEY 99 (125)
T ss_dssp HHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHH
Confidence 99999999999999765
No 178
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=2.4e-12 Score=92.15 Aligned_cols=97 Identities=11% Similarity=0.042 Sum_probs=92.2
Q ss_pred cCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHH
Q 024419 36 QDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW---EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVS 112 (268)
Q Consensus 36 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 112 (268)
.+|.+...++.+|.++...|++++|+..|++++..+|++ ..++..+|.++...|++++|+..++++++++|+++.++
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 102 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence 467889999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHHHH
Q 024419 113 RKIKRVSQLAKDKKRAQEVE 132 (268)
Q Consensus 113 ~~l~~~~~~~~~~~~a~~~~ 132 (268)
..+|.++...+++++|....
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~ 122 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDL 122 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999997663
No 179
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.43 E-value=1.5e-12 Score=91.22 Aligned_cols=91 Identities=18% Similarity=0.044 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHH
Q 024419 42 TLFSNRAAAFLHLVKLNKALADAETTISLNPQWE---KGYFRKGCILEAMEQYDDALSAFQTALQYNPQS---AEVSRKI 115 (268)
Q Consensus 42 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~l 115 (268)
.+++.+|.++...|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..|+++++.+|++ +.++..+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 4578899999999999999999999999999988 899999999999999999999999999999999 8999999
Q ss_pred HHHHHHHHHHHHhHHHH
Q 024419 116 KRVSQLAKDKKRAQEVE 132 (268)
Q Consensus 116 ~~~~~~~~~~~~a~~~~ 132 (268)
|.++...|++++|....
T Consensus 83 a~~~~~~g~~~~A~~~~ 99 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTL 99 (129)
T ss_dssp HHHHHHTTCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHH
Confidence 99999999999997663
No 180
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.42 E-value=1.9e-12 Score=89.46 Aligned_cols=82 Identities=21% Similarity=0.165 Sum_probs=75.9
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 82 (268)
.|.++.++..+|.++...|++++|+..|+++++.+|+++.+++++|.++..+|++++|+..+++++..+|+++.+.....
T Consensus 23 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 102 (117)
T 3k9i_A 23 GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQ 102 (117)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHH
T ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999987654433
Q ss_pred HH
Q 024419 83 CI 84 (268)
Q Consensus 83 ~~ 84 (268)
.+
T Consensus 103 ai 104 (117)
T 3k9i_A 103 AI 104 (117)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 181
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.41 E-value=3.2e-13 Score=116.19 Aligned_cols=108 Identities=17% Similarity=0.214 Sum_probs=97.3
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 82 (268)
.|.++.++..+|.++...|++++|+..|+++++++|+++.+++++|.+|..+|++++|+..|+++++++|++..++..++
T Consensus 36 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~ 115 (477)
T 1wao_1 36 NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQ 115 (477)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHH
T ss_pred CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 47788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HH--HHHccCHHHHHHHHH-----------HHHhhCCCCHH
Q 024419 83 CI--LEAMEQYDDALSAFQ-----------TALQYNPQSAE 110 (268)
Q Consensus 83 ~~--~~~~~~~~~A~~~~~-----------~~l~~~p~~~~ 110 (268)
.+ +...|++++|++.++ +++.++|+...
T Consensus 116 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~ 156 (477)
T 1wao_1 116 ECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSG 156 (477)
T ss_dssp HHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCS
T ss_pred HHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccccc
Confidence 98 888999999999999 88888887643
No 182
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.41 E-value=4.7e-12 Score=108.23 Aligned_cols=184 Identities=7% Similarity=-0.002 Sum_probs=143.1
Q ss_pred hHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc----CChHHHHHHHHHHHhhCCCCHHHH
Q 024419 6 EEMSLKDKGNEFFKAG---NYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHL----VKLNKALADAETTISLNPQWEKGY 78 (268)
Q Consensus 6 ~~~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~ 78 (268)
++.+++.+|.++...| ++++|+..|+++.+..|..+..++++|.+|... +++++|+..|+++. |.++.++
T Consensus 175 ~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~ 251 (452)
T 3e4b_A 175 TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASW 251 (452)
T ss_dssp CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHH
T ss_pred CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHH
Confidence 4558899999999999 999999999999999999999999999999776 79999999999998 9999999
Q ss_pred HHHHHH-H--HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH-----HHHHhHHHHhhhhhHHHhhhHHHHHHH
Q 024419 79 FRKGCI-L--EAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAK-----DKKRAQEVENIRSNVDMVQHLDEFKSE 150 (268)
Q Consensus 79 ~~la~~-~--~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~ 150 (268)
+.+|.+ + ...+++++|+..|+++.+. +++.++..+|.++. .| ++++|..+.....
T Consensus 252 ~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-------------- 314 (452)
T 3e4b_A 252 VSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-------------- 314 (452)
T ss_dssp HHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT--------------
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh--------------
Confidence 999999 4 5689999999999999854 58999999999997 55 7888866642111
Q ss_pred hhhhcCchhhhHHHHHHH----HHHHHHHHHhhhhhhhch-hHHHHH-----------hhhhhhhHhhhhHHhcCCc
Q 024419 151 MSEKYGAEECWKHVFSFV----VETMETAVKSWHETSKVD-AKVYFL-----------LDKEKTDTEKYAPIVNVDK 211 (268)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~-~~~~~~-----------~~~~~~a~~~~~~~~~~~~ 211 (268)
..........+.++.. ..++++|+..|+++.+.. +...+. ..+..+|..+|+++.....
T Consensus 315 --~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 315 --GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp --TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred --CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 1111122233332222 347889999999887643 222221 2377889999999988754
No 183
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.41 E-value=2e-12 Score=86.88 Aligned_cols=88 Identities=15% Similarity=0.159 Sum_probs=73.6
Q ss_pred CCchHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--CHHHH
Q 024419 1 MAAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ--WEKGY 78 (268)
Q Consensus 1 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~ 78 (268)
+..|.++.+++.+|.+++..|++++|+..|+++++.+|+++.+|+.+|.+|..+|++++|+..|++++.+.|. +....
T Consensus 1 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~ 80 (100)
T 3ma5_A 1 MEDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDL 80 (100)
T ss_dssp ----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred CCCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHH
Confidence 3568899999999999999999999999999999999999999999999999999999999999999998764 34444
Q ss_pred HHHHHHHHHc
Q 024419 79 FRKGCILEAM 88 (268)
Q Consensus 79 ~~la~~~~~~ 88 (268)
..+...+...
T Consensus 81 ~~l~~~l~~~ 90 (100)
T 3ma5_A 81 SELQDAKLKA 90 (100)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 4444444433
No 184
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.39 E-value=2.9e-12 Score=89.50 Aligned_cols=94 Identities=11% Similarity=0.061 Sum_probs=88.5
Q ss_pred CChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC-------HHH
Q 024419 39 SNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS-------AEV 111 (268)
Q Consensus 39 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~-------~~~ 111 (268)
..+..++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|++ +.+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 4567899999999999999999999999999999999999999999999999999999999999999887 899
Q ss_pred HHHHHHHHHHHHHHHHhHHHH
Q 024419 112 SRKIKRVSQLAKDKKRAQEVE 132 (268)
Q Consensus 112 ~~~l~~~~~~~~~~~~a~~~~ 132 (268)
+..+|.++...|++++|....
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~ 102 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFY 102 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHH
Confidence 999999999999999997663
No 185
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.37 E-value=8.3e-11 Score=109.58 Aligned_cols=115 Identities=10% Similarity=0.029 Sum_probs=91.0
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-----------
Q 024419 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ----------- 73 (268)
Q Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~----------- 73 (268)
..+.+|..+|..+...|++++|+..|.++ ++...+..+|.++.+.|++++|++.+..+.+..++
T Consensus 1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaY 1177 (1630)
T 1xi4_A 1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFAL 1177 (1630)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHH
Confidence 45788999999999999999999999876 78899999999999999999999999888766533
Q ss_pred ----------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419 74 ----------------WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE 132 (268)
Q Consensus 74 ----------------~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 132 (268)
+...+..+|..+...|+|++|+..|.++ ..|..++.++..+|++++|.+..
T Consensus 1178 AKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaa 1244 (1630)
T 1xi4_A 1178 AKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGA 1244 (1630)
T ss_pred HhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHH
Confidence 2234556777777777777777777775 46667777777777777776554
No 186
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.37 E-value=3.3e-12 Score=97.95 Aligned_cols=124 Identities=13% Similarity=0.060 Sum_probs=110.6
Q ss_pred hHhHHHHHHHHHHHHHcC----CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCC--C
Q 024419 4 EAEEMSLKDKGNEFFKAG----NYLKAAALYTQAIKQDPSNPTLFSNRAAAFLH----LVKLNKALADAETTISLNP--Q 73 (268)
Q Consensus 4 ~~~~~~~~~~g~~~~~~~----~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p--~ 73 (268)
+.++.+++.+|..+.. + ++++|+.+|+++.+ +.++.+++++|.+|.. .+++++|+.+|+++++..| .
T Consensus 47 ~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~ 123 (212)
T 3rjv_A 47 QGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDA 123 (212)
T ss_dssp TTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHH
T ss_pred cCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcc
Confidence 3567889999999988 7 99999999999965 6799999999999998 8999999999999999988 4
Q ss_pred CHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH-H-----HHHHhHHH
Q 024419 74 WEKGYFRKGCILEA----MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA-K-----DKKRAQEV 131 (268)
Q Consensus 74 ~~~~~~~la~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~-~-----~~~~a~~~ 131 (268)
++.+++.+|.+|.. .+++++|+..|+++++. |.++.++..+|.++... + ++++|..+
T Consensus 124 ~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~ 190 (212)
T 3rjv_A 124 AVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHW 190 (212)
T ss_dssp HHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHH
Confidence 69999999999999 88999999999999999 88888999999998754 2 67777655
No 187
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.35 E-value=1.1e-12 Score=107.85 Aligned_cols=103 Identities=12% Similarity=0.104 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH-HH
Q 024419 8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI-LE 86 (268)
Q Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~ 86 (268)
.++.++|.++...|+|++|+..|+++++.+|++..+++++|.+|..+|++++|+.+|+++++++|++..++..++.+ ..
T Consensus 231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~ 310 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ 310 (338)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999988 44
Q ss_pred HccCHHHHHHHHHHHHhhCCCCHH
Q 024419 87 AMEQYDDALSAFQTALQYNPQSAE 110 (268)
Q Consensus 87 ~~~~~~~A~~~~~~~l~~~p~~~~ 110 (268)
..+..+.+...|.+++...|+++.
T Consensus 311 ~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 311 EKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHhhCCCCCCCC
Confidence 567788899999999999998764
No 188
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.34 E-value=2.4e-11 Score=102.72 Aligned_cols=199 Identities=11% Similarity=0.066 Sum_probs=146.5
Q ss_pred CCchHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh-----------------HHHHHHHHHHHHcCChHHHHHH
Q 024419 1 MAAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP-----------------TLFSNRAAAFLHLVKLNKALAD 63 (268)
Q Consensus 1 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-----------------~~~~~~a~~~~~~~~~~~A~~~ 63 (268)
|+.|. +.+..|..+...|+|++|++.|.++++.+|... .++.++|.+|...|++++|++.
T Consensus 1 ~s~p~---~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~ 77 (434)
T 4b4t_Q 1 MSLPG---SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREF 77 (434)
T ss_dssp CCSTT---HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CCChH---HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 44553 578899999999999999999999999988753 3688999999999999999999
Q ss_pred HHHHHhhCCCCH------HHHHHHHHHHHHccCHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHHHHHHHhHHH
Q 024419 64 AETTISLNPQWE------KGYFRKGCILEAMEQYDDALSAFQTALQYNP------QSAEVSRKIKRVSQLAKDKKRAQEV 131 (268)
Q Consensus 64 ~~~al~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p------~~~~~~~~l~~~~~~~~~~~~a~~~ 131 (268)
+.+++...+... .+...+|.++...|+++.|+..+++++...+ ....++..+|.++...|++++|..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 157 (434)
T 4b4t_Q 78 IPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLAL 157 (434)
T ss_dssp HHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHH
Confidence 999998866543 3455678888889999999999999987643 2367889999999999999999776
Q ss_pred HhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchhH-----------------HHHHhh
Q 024419 132 ENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK-----------------VYFLLD 194 (268)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----------------~~~~~~ 194 (268)
.... ........ -.......+...+.++...+++++|...+.+++.+.+. ++...+
T Consensus 158 l~~~--~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 230 (434)
T 4b4t_Q 158 INDL--LREFKKLD-----DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDK 230 (434)
T ss_dssp HHHH--HHHHTTSS-----CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSS
T ss_pred HHHH--HHHHHhcc-----cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHH
Confidence 3210 00000000 00011123444555677788888888888887766543 233456
Q ss_pred hhhhhHhhhhHHhcC
Q 024419 195 KEKTDTEKYAPIVNV 209 (268)
Q Consensus 195 ~~~~a~~~~~~~~~~ 209 (268)
++..|...|..++..
T Consensus 231 ~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 231 DYKTAFSYFFESFES 245 (434)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 778888888777765
No 189
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.31 E-value=2.2e-11 Score=104.49 Aligned_cols=125 Identities=11% Similarity=0.053 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHhh-----CCCC
Q 024419 8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQ-----DPSN---PTLFSNRAAAFLHLVKLNKALADAETTISL-----NPQW 74 (268)
Q Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~ 74 (268)
......+..+..+|+|++|+..|++++++ .|++ ..++.++|.+|..+|+|++|+..+++++.+ -|++
T Consensus 310 ~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H 389 (490)
T 3n71_A 310 KDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNN 389 (490)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34456667788999999999999999986 3444 578999999999999999999999999976 3444
Q ss_pred ---HHHHHHHHHHHHHccCHHHHHHHHHHHHhh-----CCCCH---HHHHHHHHHHHHHHHHHHhHHHH
Q 024419 75 ---EKGYFRKGCILEAMEQYDDALSAFQTALQY-----NPQSA---EVSRKIKRVSQLAKDKKRAQEVE 132 (268)
Q Consensus 75 ---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~-----~p~~~---~~~~~l~~~~~~~~~~~~a~~~~ 132 (268)
...+.++|.+|..+|++++|+..|++++++ -|+++ .....++.++..++.+++|+...
T Consensus 390 p~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~ 458 (490)
T 3n71_A 390 AQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMY 458 (490)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567999999999999999999999999976 46664 45667888888888898887764
No 190
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.30 E-value=2.9e-11 Score=100.57 Aligned_cols=94 Identities=18% Similarity=0.178 Sum_probs=89.8
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 82 (268)
.|..+..+..+|.+++..|++++|+.+++++++++|+++.+++.+|.+|..+|++++|+..|+++++++|++..++..++
T Consensus 269 ~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~ 348 (370)
T 1ihg_A 269 QPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELL 348 (370)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 46678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHH
Q 024419 83 CILEAMEQYDDALS 96 (268)
Q Consensus 83 ~~~~~~~~~~~A~~ 96 (268)
.++...++++++..
T Consensus 349 ~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 349 KVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988764
No 191
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.29 E-value=4.6e-13 Score=111.94 Aligned_cols=200 Identities=8% Similarity=-0.064 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024419 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILE 86 (268)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 86 (268)
+++|..+|..+...|++++|++.|.++ .++..+..++.++...|++++|+..++.+.+..|+ +.+...++.+|.
T Consensus 32 ~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~ 105 (449)
T 1b89_A 32 PAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALA 105 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHH
Confidence 456777777777777777777777653 34557777777777777777777777777664333 555666777777
Q ss_pred HccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhhhHHHHH
Q 024419 87 AMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFS 166 (268)
Q Consensus 87 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (268)
+.|+++++.+.++. | +..+|..+|..+...|.+++|..+.... ..+...+...
T Consensus 106 Klg~l~e~e~f~~~-----p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------------------~n~~~LA~~L 158 (449)
T 1b89_A 106 KTNRLAELEEFING-----P-NNAHIQQVGDRCYDEKMYDAAKLLYNNV---------------------SNFGRLASTL 158 (449)
T ss_dssp ---CHHHHTTTTTC-----C-----------------CTTTHHHHHHHT---------------------TCHHHHHHHH
T ss_pred HhCCHHHHHHHHcC-----C-cHHHHHHHHHHHHHcCCHHHHHHHHHHh---------------------hhHHHHHHHH
Confidence 77777776655532 3 3347777777777777777775553211 1222233334
Q ss_pred HHHHHHHHHHHhhhhhhhchhH-------HHHHhhhhhhhHhhhhHHhcCCccccCccchhHHHHHHHHH--HHHHHHHH
Q 024419 167 FVVETMETAVKSWHETSKVDAK-------VYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQY--ADDSFSSA 237 (268)
Q Consensus 167 ~~~~~~~~A~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--a~~~~~ka 237 (268)
..++++++|++.+.++. +|. ++...|+++.|...... +...|+. ......+|...|.+ +...++++
T Consensus 159 ~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~--l~~lv~~Yek~G~~eEai~lLe~a 233 (449)
T 1b89_A 159 VHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADE--LEELINYYQDRGYFEELITMLEAA 233 (449)
T ss_dssp HTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhh--HHHHHHHHHHCCCHHHHHHHHHHH
Confidence 44567777777777774 342 45556666666554443 2234433 11234556666666 77888888
Q ss_pred hhhhCCCC
Q 024419 238 ACLVAPKS 245 (268)
Q Consensus 238 ~~~~~p~~ 245 (268)
+ .++|.+
T Consensus 234 L-~le~ah 240 (449)
T 1b89_A 234 L-GLERAH 240 (449)
T ss_dssp T-TSTTCC
T ss_pred h-CCcHHH
Confidence 8 777655
No 192
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.29 E-value=5.3e-11 Score=79.31 Aligned_cols=71 Identities=18% Similarity=0.365 Sum_probs=67.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q 024419 44 FSNRAAAFLHLVKLNKALADAETTISLNPQWEK-GYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRK 114 (268)
Q Consensus 44 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 114 (268)
.+.+|.++...|++++|+..|+++++.+|+++. +++.+|.++...|++++|+..|+++++++|+++.++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 74 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR 74 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 367899999999999999999999999999999 99999999999999999999999999999999998743
No 193
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.28 E-value=4.7e-11 Score=94.46 Aligned_cols=125 Identities=8% Similarity=0.023 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC--HHHHHHHHHH
Q 024419 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW--EKGYFRKGCI 84 (268)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~ 84 (268)
.+.....+..+...|+|++|.+.|..++...|.+. +.+.+|.++++.++|++|+..|++++...+.. ..+++.+|.+
T Consensus 102 ~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 102 LAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHH
Confidence 45667788999999999999999999999999888 99999999999999999999999887753221 3589999999
Q ss_pred HHHccCHHHHHHHHHHHHhhC--CC-CHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419 85 LEAMEQYDDALSAFQTALQYN--PQ-SAEVSRKIKRVSQLAKDKKRAQEVE 132 (268)
Q Consensus 85 ~~~~~~~~~A~~~~~~~l~~~--p~-~~~~~~~l~~~~~~~~~~~~a~~~~ 132 (268)
+..+|++++|+..|++++.-. |. .++++..+|.++..+|+.++|....
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l 231 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALL 231 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999998544 66 5679999999999999999997764
No 194
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=99.26 E-value=1.4e-10 Score=82.58 Aligned_cols=99 Identities=13% Similarity=0.125 Sum_probs=89.2
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcC---ChHHHHHHHHHHHhhC-C-CCHHHHHHHHHHHHHccCHHHHHH
Q 024419 22 NYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLV---KLNKALADAETTISLN-P-QWEKGYFRKGCILEAMEQYDDALS 96 (268)
Q Consensus 22 ~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~~~~~~A~~ 96 (268)
....+.+.|.+.++.+|.+..+.+++|+|+.+.+ +.++++..++.+++.+ | ++.++++.+|..+.++|+|++|+.
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 4567888899999999999999999999999988 6679999999999999 7 678999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHH
Q 024419 97 AFQTALQYNPQSAEVSRKIKRVSQ 120 (268)
Q Consensus 97 ~~~~~l~~~p~~~~~~~~l~~~~~ 120 (268)
+++++|+++|+|..+......+..
T Consensus 93 y~~~lL~ieP~n~QA~~Lk~~ie~ 116 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQAKELERLIDK 116 (152)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHH
Confidence 999999999999988776655543
No 195
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.26 E-value=1.5e-10 Score=76.29 Aligned_cols=74 Identities=15% Similarity=0.135 Sum_probs=63.3
Q ss_pred CCCChHHHHHHHHHHHHcCC---hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH
Q 024419 37 DPSNPTLFSNRAAAFLHLVK---LNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110 (268)
Q Consensus 37 ~p~~~~~~~~~a~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 110 (268)
+|+++.++..+|.+++..++ .++|...+++++.++|+++.+++.+|..++..|+|++|+..|+++++.+|..+.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 68888889999988876665 688999999999999999999999999999999999999999999988888433
No 196
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.26 E-value=4.7e-11 Score=82.00 Aligned_cols=87 Identities=9% Similarity=0.019 Sum_probs=75.8
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--CHHHHHH
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ--WEKGYFR 80 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~ 80 (268)
.|.++..++.+|.++...|++++|+..|++++..+|.+..+++.+|.++..+|++++|+..|++++.++|. +..+...
T Consensus 15 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 94 (115)
T 2kat_A 15 GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKE 94 (115)
T ss_dssp TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccHHHHHH
Confidence 57788999999999999999999999999999999999999999999999999999999999999999885 4445555
Q ss_pred HHHHHHHcc
Q 024419 81 KGCILEAME 89 (268)
Q Consensus 81 la~~~~~~~ 89 (268)
+...+...+
T Consensus 95 l~~~l~~l~ 103 (115)
T 2kat_A 95 LQVFLRRLA 103 (115)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 554444433
No 197
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.22 E-value=9.4e-11 Score=84.62 Aligned_cols=101 Identities=13% Similarity=0.214 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC------C
Q 024419 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN------PTLFSNRAAAFLHLVKLNKALADAETTISLNPQ------W 74 (268)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~------~ 74 (268)
+.++..+|.++...|++++|+.++++++...+.. ..++.++|.++...|++++|+..+++++.+.+. .
T Consensus 49 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 128 (164)
T 3ro3_A 49 RIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGE 128 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhH
Confidence 4688999999999999999999999999986543 578999999999999999999999999987432 2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 024419 75 EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQ 107 (268)
Q Consensus 75 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~ 107 (268)
..++..+|.++...|++++|+..+++++++...
T Consensus 129 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 129 GRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999987554
No 198
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.19 E-value=7.7e-10 Score=88.68 Aligned_cols=124 Identities=11% Similarity=-0.006 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC----CHHHHHH
Q 024419 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDP--SNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ----WEKGYFR 80 (268)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~ 80 (268)
..++..+|.++...|++++|+..+.+.+..+| .+.+++..++.++..+|+.+.|.+.++++.+.+|+ +-.+...
T Consensus 100 ~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~ 179 (310)
T 3mv2_B 100 PYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILN 179 (310)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHH
Confidence 44556788888888888888888888888776 77788888888888888888888888888888873 2223344
Q ss_pred H--HHHHHHcc--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHH
Q 024419 81 K--GCILEAME--QYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV 131 (268)
Q Consensus 81 l--a~~~~~~~--~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 131 (268)
+ |.+....| ++++|...|+++.+..|+.......+. ++..+|++++|+..
T Consensus 180 Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~~~eAe~~ 233 (310)
T 3mv2_B 180 LAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRNIAEAQGI 233 (310)
T ss_dssp HHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCCHHHHHHH
Confidence 4 43455555 788888888888777776222222222 67777888888766
No 199
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.16 E-value=5.1e-09 Score=83.94 Aligned_cols=169 Identities=10% Similarity=0.022 Sum_probs=119.6
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 024419 26 AAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP--QWEKGYFRKGCILEAMEQYDDALSAFQTALQ 103 (268)
Q Consensus 26 A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~ 103 (268)
|+..+++.+...+.+..++..+|.++...|++++|+..+.+.+..+| .+.+++..++.++..+|+.+.|.+.++++.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 78888888877666777788999999999999999999999999997 8899999999999999999999999999999
Q ss_pred hCCC----CHHHHHHHH--HHHHHHH--HHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCc---hhhhHHHHHHHHHHH
Q 024419 104 YNPQ----SAEVSRKIK--RVSQLAK--DKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGA---EECWKHVFSFVVETM 172 (268)
Q Consensus 104 ~~p~----~~~~~~~l~--~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 172 (268)
.+|+ +-.+...++ .+....| .+++|..+.. ++...++. ...... ....++++
T Consensus 165 ~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~----------------El~~~~p~~~~~~lLln-~~~~~g~~ 227 (310)
T 3mv2_B 165 AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYE----------------ELSQTFPTWKTQLGLLN-LHLQQRNI 227 (310)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHH----------------HHHTTSCSHHHHHHHHH-HHHHHTCH
T ss_pred cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHH----------------HHHHhCCCcccHHHHHH-HHHHcCCH
Confidence 9994 233334444 3455555 5666644321 11112221 111111 45567888
Q ss_pred HHHHHhhhhhhhc-------------hhH-------HHHHhhhhhhhHhhhhHHhcCCccc
Q 024419 173 ETAVKSWHETSKV-------------DAK-------VYFLLDKEKTDTEKYAPIVNVDKAF 213 (268)
Q Consensus 173 ~~A~~~~~~~~~~-------------~~~-------~~~~~~~~~~a~~~~~~~~~~~~~~ 213 (268)
++|.+.++..++. +|. +...+|+ .+.+..+++....|..
T Consensus 228 ~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~h 286 (310)
T 3mv2_B 228 AEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEH 286 (310)
T ss_dssp HHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCC
Confidence 8888888766555 222 2334465 7777778888877754
No 200
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.15 E-value=6.9e-09 Score=92.43 Aligned_cols=207 Identities=10% Similarity=-0.027 Sum_probs=149.2
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHH-HHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 024419 24 LKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKAL-ADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTAL 102 (268)
Q Consensus 24 ~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~-~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l 102 (268)
+.....|++++...|.++.+|+..+..+...|+.++|+ ..|++++...|.+...|+.++......|+++.|.+.|++++
T Consensus 326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 44678899999999999999999999999999999997 99999999999999999999999999999999999999999
Q ss_pred hh-----------CCC-----------CHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHhhhHHHHHHHhhhhcCchhh
Q 024419 103 QY-----------NPQ-----------SAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEEC 160 (268)
Q Consensus 103 ~~-----------~p~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (268)
.. .|. ...+|...+.+....+..+.|..+.... +... .......+.
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A--~~~~----------~~~~~~lyi 473 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC--RRLK----------KLVTPDIYL 473 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH--HHTG----------GGSCTHHHH
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH--HHhc----------CCCChHHHH
Confidence 75 253 3457888888888888888877663211 1000 000111122
Q ss_pred hHHHHHHHH-HHHHHHHHhhhhhhhchhH----------HHHHhhhhhhhHhhhhHHhcCCccccCccchhHHHHHHH--
Q 024419 161 WKHVFSFVV-ETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLR-- 227 (268)
Q Consensus 161 ~~~~~~~~~-~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 227 (268)
..+.++... ++.+.|.+.|+++++..|. .....|+.+.|...|++++...+.. ......+...-
T Consensus 474 ~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~---~~~~~lw~~~~~f 550 (679)
T 4e6h_A 474 ENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDS---HLLKMIFQKVIFF 550 (679)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSST---THHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHH
Confidence 222222222 2366777777777776664 2335688999999999999986631 11222222222
Q ss_pred --HH-----HHHHHHHHhhhhCCCCc
Q 024419 228 --QY-----ADDSFSSAACLVAPKSI 246 (268)
Q Consensus 228 --~~-----a~~~~~ka~~~~~p~~~ 246 (268)
.+ +.+..+++. +..|++.
T Consensus 551 E~~~G~~~~~~~v~~R~~-~~~P~~~ 575 (679)
T 4e6h_A 551 ESKVGSLNSVRTLEKRFF-EKFPEVN 575 (679)
T ss_dssp HHHTCCSHHHHHHHHHHH-HHSTTCC
T ss_pred HHHcCCHHHHHHHHHHHH-HhCCCCc
Confidence 22 888889999 9999863
No 201
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.14 E-value=8.2e-12 Score=104.43 Aligned_cols=110 Identities=12% Similarity=0.025 Sum_probs=19.5
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024419 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI 84 (268)
Q Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 84 (268)
.++..+...+..+...|+|++|+.+++.+++..+ ++.+...++.||.++|++.++++.++ .| +..+|..+|..
T Consensus 59 ~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~-~~~i~~~Li~~Y~Klg~l~e~e~f~~-----~p-n~~a~~~IGd~ 131 (449)
T 1b89_A 59 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR-ESYVETELIFALAKTNRLAELEEFIN-----GP-NNAHIQQVGDR 131 (449)
T ss_dssp ---------------------------------------------------CHHHHTTTTT-----CC------------
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHhCCHHHHHHHHc-----CC-cHHHHHHHHHH
Confidence 3455777788888888888888888888876422 24444445555555555555444442 12 22244444444
Q ss_pred HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhH
Q 024419 85 LEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQ 129 (268)
Q Consensus 85 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~ 129 (268)
+...|+|++|+..|.++ ..|..++.++..+|++++|.
T Consensus 132 ~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AV 168 (449)
T 1b89_A 132 CYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAV 168 (449)
T ss_dssp -----CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHH
Confidence 44444444444444443 23444444444444444443
No 202
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.13 E-value=3.4e-10 Score=74.59 Aligned_cols=74 Identities=15% Similarity=0.130 Sum_probs=68.7
Q ss_pred CchHhHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH
Q 024419 2 AAEAEEMSLKDKGNEFFKAGN---YLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWE 75 (268)
Q Consensus 2 ~~~~~~~~~~~~g~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~ 75 (268)
+.|.+++.+..+|.+++..++ .++|...++++++.+|+++.+++.+|..++..|+|++|+..|++++..+|..+
T Consensus 1 ~~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 1 SNAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp -CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 358899999999999987766 79999999999999999999999999999999999999999999999999843
No 203
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.11 E-value=3.5e-10 Score=95.53 Aligned_cols=127 Identities=13% Similarity=0.092 Sum_probs=108.3
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh------HHHHHHHHHHHHcCChHHHHHHHHHHHhhCC------C
Q 024419 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP------TLFSNRAAAFLHLVKLNKALADAETTISLNP------Q 73 (268)
Q Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p------~ 73 (268)
...++..+|.++...|++++|++++.+++...+... .+...+|.++...|++++|+..+++++...+ .
T Consensus 54 ~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 133 (434)
T 4b4t_Q 54 QETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFL 133 (434)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSS
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHH
Confidence 345789999999999999999999999998866543 3566788899999999999999999987633 2
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419 74 WEKGYFRKGCILEAMEQYDDALSAFQTALQY------NPQSAEVSRKIKRVSQLAKDKKRAQEVE 132 (268)
Q Consensus 74 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~------~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 132 (268)
...++..+|.++...|+|++|+..+++++.. .|....++..++.++...|++++|....
T Consensus 134 ~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 198 (434)
T 4b4t_Q 134 KHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASL 198 (434)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 3678999999999999999999999999876 2334678999999999999999997764
No 204
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=99.06 E-value=2.5e-09 Score=72.07 Aligned_cols=75 Identities=16% Similarity=0.198 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH
Q 024419 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQD-------PSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYF 79 (268)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 79 (268)
+..++.+|..++..|+|..|+..|+.|++.. +....++..+|.|+.++|+++.|+..++++++++|++..+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 4455666666666666666666666666542 122344455555555555555555555555555555544444
Q ss_pred HH
Q 024419 80 RK 81 (268)
Q Consensus 80 ~l 81 (268)
++
T Consensus 85 n~ 86 (104)
T 2v5f_A 85 NL 86 (104)
T ss_dssp HH
T ss_pred hH
Confidence 43
No 205
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=99.05 E-value=5.6e-09 Score=70.32 Aligned_cols=80 Identities=9% Similarity=-0.053 Sum_probs=71.4
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHH
Q 024419 40 NPTLFSNRAAAFLHLVKLNKALADAETTISLN-------PQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVS 112 (268)
Q Consensus 40 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 112 (268)
++.-.+.+|..++..++|..|+..|++|++.. +..+.++..+|.++.++|+++.|+..++++++++|+++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 45677899999999999999999999999863 34578999999999999999999999999999999999998
Q ss_pred HHHHHHH
Q 024419 113 RKIKRVS 119 (268)
Q Consensus 113 ~~l~~~~ 119 (268)
.+++.+.
T Consensus 84 ~n~~~~~ 90 (104)
T 2v5f_A 84 GNLKYFE 90 (104)
T ss_dssp HHHHHHH
T ss_pred hhHHHHH
Confidence 8777443
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.03 E-value=4.4e-09 Score=74.71 Aligned_cols=104 Identities=13% Similarity=0.040 Sum_probs=79.0
Q ss_pred CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----ccCHHHHHH
Q 024419 21 GNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEA----MEQYDDALS 96 (268)
Q Consensus 21 ~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~ 96 (268)
+++++|+..|+++.+..+.. +. +|.+|...+..++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+.
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMF--GC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTT--HH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCHh--hh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 46778888888888775333 33 888888878888888888888776 577888888888887 778888888
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHH----HHHHHHhHHHH
Q 024419 97 AFQTALQYNPQSAEVSRKIKRVSQL----AKDKKRAQEVE 132 (268)
Q Consensus 97 ~~~~~l~~~p~~~~~~~~l~~~~~~----~~~~~~a~~~~ 132 (268)
.|+++.+. .++.+...+|.++.. .++.++|..+.
T Consensus 83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~ 120 (138)
T 1klx_A 83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTF 120 (138)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHH
Confidence 88888766 677888888888877 66777776653
No 207
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=99.01 E-value=2.5e-09 Score=90.46 Aligned_cols=106 Identities=13% Similarity=0.095 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHhh-----CCCC
Q 024419 8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQ-----DPSN---PTLFSNRAAAFLHLVKLNKALADAETTISL-----NPQW 74 (268)
Q Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~ 74 (268)
.........+..+|+|++|+..++++++. .|++ ..++.++|.+|..+|+|++|+..+++++.+ -|++
T Consensus 288 ~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~H 367 (429)
T 3qwp_A 288 QESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSH 367 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSC
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCC
Confidence 34455566677899999999999999986 3444 578999999999999999999999999976 3444
Q ss_pred ---HHHHHHHHHHHHHccCHHHHHHHHHHHHhh-----CCCCHHHHH
Q 024419 75 ---EKGYFRKGCILEAMEQYDDALSAFQTALQY-----NPQSAEVSR 113 (268)
Q Consensus 75 ---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~-----~p~~~~~~~ 113 (268)
...+.++|.+|..+|++++|+..|++++++ -|+++....
T Consensus 368 p~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 368 PVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 567999999999999999999999999976 467765543
No 208
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=99.01 E-value=2.9e-09 Score=90.00 Aligned_cols=99 Identities=11% Similarity=0.077 Sum_probs=82.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhc-----CCCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHhh--------CCCCHHH
Q 024419 14 GNEFFKAGNYLKAAALYTQAIKQ-----DPSN---PTLFSNRAAAFLHLVKLNKALADAETTISL--------NPQWEKG 77 (268)
Q Consensus 14 g~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~ 77 (268)
+......|+|++|+..|++++++ .|++ ..++.++|.+|..+|+|++|+..+++++.+ +|+-...
T Consensus 305 ~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~ 384 (433)
T 3qww_A 305 FRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASM 384 (433)
T ss_dssp HHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 33444568999999999999985 4555 467899999999999999999999999976 3444567
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhh-----CCCCHHHH
Q 024419 78 YFRKGCILEAMEQYDDALSAFQTALQY-----NPQSAEVS 112 (268)
Q Consensus 78 ~~~la~~~~~~~~~~~A~~~~~~~l~~-----~p~~~~~~ 112 (268)
+.++|.+|..+|++++|+..|++++++ -|+++..-
T Consensus 385 l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 385 WLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 999999999999999999999999976 46776554
No 209
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.00 E-value=1.1e-08 Score=91.04 Aligned_cols=198 Identities=7% Similarity=-0.063 Sum_probs=147.3
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh-----------
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAA-ALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL----------- 70 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~-~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----------- 70 (268)
.|..+..|+..+..+...|+.++|. ..|.+|+...|.+..+|+..+......|+++.|...|++++..
T Consensus 339 ~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~ 418 (679)
T 4e6h_A 339 VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMED 418 (679)
T ss_dssp TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 3667889999999999999999997 9999999999999999999999999999999999999999975
Q ss_pred CCC-----------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHHHH-HHHhHHHHhhhhh
Q 024419 71 NPQ-----------WEKGYFRKGCILEAMEQYDDALSAFQTALQY-NPQSAEVSRKIKRVSQLAKD-KKRAQEVENIRSN 137 (268)
Q Consensus 71 ~p~-----------~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~ 137 (268)
.|. ...+|...+......|..+.|...|.++++. .+....+|...+.+....+. .+.|..+... .
T Consensus 419 ~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~--~ 496 (679)
T 4e6h_A 419 DPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLEL--G 496 (679)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHH--H
T ss_pred cCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHH--H
Confidence 253 3568999999999999999999999999988 44556777666666544433 5666554210 0
Q ss_pred HHHhhhHHHHHHHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhhchh---H----------HHHHhhhhhhhHhhhh
Q 024419 138 VDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDA---K----------VYFLLDKEKTDTEKYA 204 (268)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~----------~~~~~~~~~~a~~~~~ 204 (268)
+.. .+...........+....++.+.|...|++++...| . .-...|+.+.+...++
T Consensus 497 Lk~-----------~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~ 565 (679)
T 4e6h_A 497 LKY-----------FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEK 565 (679)
T ss_dssp HHH-----------HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred HHH-----------CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 111 111111111222344556788899999999887766 2 1225588888888888
Q ss_pred HHhcCCccc
Q 024419 205 PIVNVDKAF 213 (268)
Q Consensus 205 ~~~~~~~~~ 213 (268)
++....|..
T Consensus 566 R~~~~~P~~ 574 (679)
T 4e6h_A 566 RFFEKFPEV 574 (679)
T ss_dssp HHHHHSTTC
T ss_pred HHHHhCCCC
Confidence 888887753
No 210
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.00 E-value=5.5e-09 Score=74.23 Aligned_cols=98 Identities=14% Similarity=0.031 Sum_probs=88.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-
Q 024419 13 KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLH----LVKLNKALADAETTISLNPQWEKGYFRKGCILEA- 87 (268)
Q Consensus 13 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~- 87 (268)
+|..+...+.+++|+..|+++.+. .++.+++++|.+|.. .+++++|+.+|+++.+. .++.+++.+|.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G 106 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAG 106 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCC
Confidence 888888889999999999999987 689999999999999 89999999999999987 689999999999999
Q ss_pred ---ccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024419 88 ---MEQYDDALSAFQTALQYNPQSAEVSRKIK 116 (268)
Q Consensus 88 ---~~~~~~A~~~~~~~l~~~p~~~~~~~~l~ 116 (268)
.+++++|+..|+++.+. .++.+...++
T Consensus 107 ~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l~ 136 (138)
T 1klx_A 107 KGVVKNEKQAVKTFEKACRL--GSEDACGILN 136 (138)
T ss_dssp SSSCCCHHHHHHHHHHHHHT--TCHHHHHHC-
T ss_pred CCCCcCHHHHHHHHHHHHHC--CCHHHHHHHh
Confidence 89999999999999987 4555555544
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.97 E-value=1.5e-08 Score=82.67 Aligned_cols=126 Identities=12% Similarity=0.098 Sum_probs=101.1
Q ss_pred hHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCh----H---HHHH-HHH--HHHhhCC
Q 024419 6 EEMSLKDKGNEFFKAGN---YLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKL----N---KALA-DAE--TTISLNP 72 (268)
Q Consensus 6 ~~~~~~~~g~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~----~---~A~~-~~~--~al~~~p 72 (268)
++-.++.+|..++..++ +.+|+.+|++|++++|+++.++..++.||.....+ . .++. .++ .++..+|
T Consensus 195 ~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~ 274 (372)
T 3ly7_A 195 ALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELN 274 (372)
T ss_dssp GGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCC
Confidence 45566788888887654 58999999999999999999999999998642211 1 1111 122 2235679
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419 73 QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE 132 (268)
Q Consensus 73 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 132 (268)
..+.++..+|..+...|++++|+..+++++.++|+ ..++..+|.++...|++++|.+..
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~ 333 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAY 333 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999999999999999999975 778889999999999999997663
No 212
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.96 E-value=1.2e-08 Score=80.09 Aligned_cols=106 Identities=14% Similarity=0.077 Sum_probs=93.0
Q ss_pred chHhHHHHHHHHHHHHH-----cC------CHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHc-----CChHHHHHHH
Q 024419 3 AEAEEMSLKDKGNEFFK-----AG------NYLKAAALYTQAIKQDPS--NPTLFSNRAAAFLHL-----VKLNKALADA 64 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~-----~~------~~~~A~~~~~~al~~~p~--~~~~~~~~a~~~~~~-----~~~~~A~~~~ 64 (268)
.|.+++.++..|-.... .| ....|...+++++++||+ +..+|..+|..|... |+.++|..+|
T Consensus 148 ~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~f 227 (301)
T 3u64_A 148 TRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAF 227 (301)
T ss_dssp CGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHH
Confidence 46778888887776643 13 357899999999999999 788999999999995 9999999999
Q ss_pred HHHHhhCCCC-HHHHHHHHHHHHH-ccCHHHHHHHHHHHHhhCCCC
Q 024419 65 ETTISLNPQW-EKGYFRKGCILEA-MEQYDDALSAFQTALQYNPQS 108 (268)
Q Consensus 65 ~~al~~~p~~-~~~~~~la~~~~~-~~~~~~A~~~~~~~l~~~p~~ 108 (268)
++++.++|+. +.+++..|..+.. .|+++.|...+++++..+|..
T Consensus 228 erAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 228 EHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 9999999975 9999999999988 599999999999999998863
No 213
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.88 E-value=6.1e-09 Score=89.40 Aligned_cols=103 Identities=5% Similarity=-0.080 Sum_probs=89.1
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh----
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ--------DPSNPTLFSNRAAAFLHLVKLNKALADAETTISL---- 70 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---- 70 (268)
.|.-+..+.++|.++..+|+|++|+.++++++++ +|..+..+.++|.+|..+|++++|+..|++|+.+
T Consensus 347 Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~ 426 (490)
T 3n71_A 347 NLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVT 426 (490)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 4667888999999999999999999999999986 3444578999999999999999999999999976
Q ss_pred -CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 024419 71 -NPQW---EKGYFRKGCILEAMEQYDDALSAFQTALQYN 105 (268)
Q Consensus 71 -~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~ 105 (268)
-|++ .+....++.++..++.+++|...|.++.+..
T Consensus 427 lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 427 HGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp TCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555 4567789999999999999999999986543
No 214
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.83 E-value=9.5e-08 Score=65.51 Aligned_cols=102 Identities=12% Similarity=0.087 Sum_probs=88.6
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHH---HHHHHHHHHhhC-C-CCHHHHHHHHHHHHHccCHH
Q 024419 18 FKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNK---ALADAETTISLN-P-QWEKGYFRKGCILEAMEQYD 92 (268)
Q Consensus 18 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~~~~~ 92 (268)
........+...|.+.+..++.+..+.+++|+++.+..+... +|..++..+..+ | ..-+.++.+|..+++.|+|+
T Consensus 12 ~~~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 12 VSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred CCHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHH
Confidence 344456778888999988889999999999999999988776 999999999987 5 56789999999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024419 93 DALSAFQTALQYNPQSAEVSRKIKRVS 119 (268)
Q Consensus 93 ~A~~~~~~~l~~~p~~~~~~~~l~~~~ 119 (268)
+|+.+++.+|+++|+|..+......+.
T Consensus 92 ~A~~~~~~lL~~eP~n~QA~~Lk~~i~ 118 (126)
T 1nzn_A 92 KALKYVRGLLQTEPQNNQAKELERLID 118 (126)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999999999998876655543
No 215
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.74 E-value=4.6e-08 Score=69.58 Aligned_cols=80 Identities=11% Similarity=0.052 Sum_probs=71.7
Q ss_pred hHhHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcC-C-CChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHH
Q 024419 4 EAEEMSLKDKGNEFFKAG---NYLKAAALYTQAIKQD-P-SNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGY 78 (268)
Q Consensus 4 ~~~~~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~-p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 78 (268)
|.+.++.++.|.++...+ +.++++.+++.+++.+ | ++.++++++|..++++|+|++|+.+++++++++|+|..+.
T Consensus 29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~ 108 (152)
T 1pc2_A 29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK 108 (152)
T ss_dssp CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 456789999999999988 7779999999999998 7 6789999999999999999999999999999999998776
Q ss_pred HHHHH
Q 024419 79 FRKGC 83 (268)
Q Consensus 79 ~~la~ 83 (268)
..+-.
T Consensus 109 ~Lk~~ 113 (152)
T 1pc2_A 109 ELERL 113 (152)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 216
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.59 E-value=4.2e-07 Score=74.23 Aligned_cols=75 Identities=19% Similarity=0.190 Sum_probs=69.7
Q ss_pred hcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH
Q 024419 35 KQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110 (268)
Q Consensus 35 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 110 (268)
..+|.++.++..+|.++...|++++|+..+++++.++|. ..+|..+|.++...|++++|++.|++++.++|..+.
T Consensus 271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 567999999999999999999999999999999999975 778899999999999999999999999999998753
No 217
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.48 E-value=5.2e-06 Score=65.31 Aligned_cols=97 Identities=11% Similarity=0.089 Sum_probs=81.0
Q ss_pred hcCCCChHHHHHHHHHHHH---c--CC------hHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHc-----cCHHHHHH
Q 024419 35 KQDPSNPTLFSNRAAAFLH---L--VK------LNKALADAETTISLNPQ--WEKGYFRKGCILEAM-----EQYDDALS 96 (268)
Q Consensus 35 ~~~p~~~~~~~~~a~~~~~---~--~~------~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~-----~~~~~A~~ 96 (268)
+.+|+++++++..|..... . |. ...|...++++++++|+ +..+|..+|.+|... |+.++|..
T Consensus 146 ~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~ 225 (301)
T 3u64_A 146 RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHT 225 (301)
T ss_dssp TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHH
T ss_pred HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHH
Confidence 3467888888888877654 2 32 46899999999999999 577999999999995 99999999
Q ss_pred HHHHHHhhCCCC-HHHHHHHHHHHHHH-HHHHHhHHH
Q 024419 97 AFQTALQYNPQS-AEVSRKIKRVSQLA-KDKKRAQEV 131 (268)
Q Consensus 97 ~~~~~l~~~p~~-~~~~~~l~~~~~~~-~~~~~a~~~ 131 (268)
+|+++++++|+. ..++...+..+... ++.+.+...
T Consensus 226 ~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~ 262 (301)
T 3u64_A 226 AFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEA 262 (301)
T ss_dssp HHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHH
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHH
Confidence 999999999975 99999999987664 777777655
No 218
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=98.46 E-value=2.2e-06 Score=61.37 Aligned_cols=111 Identities=13% Similarity=0.169 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh---------HHHHHHHHHHHHcCChHHHHHHHHHHHhhC---CCC-
Q 024419 8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP---------TLFSNRAAAFLHLVKLNKALADAETTISLN---PQW- 74 (268)
Q Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---------~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---p~~- 74 (268)
.+++.....++..|.|+.|+-....++....++. .++..+|.+++..++|..|...|+++|+.. |++
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3678888999999999999999999877643333 478899999999999999999999997652 111
Q ss_pred ---------------------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024419 75 ---------------------EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVS 119 (268)
Q Consensus 75 ---------------------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 119 (268)
.++.+.+|.||...+++++|+..++.+-.. -..+.+...||++|
T Consensus 101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k-~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR-QRTPKINMLLANLY 165 (167)
T ss_dssp ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG-GCCHHHHHHHHHHC
T ss_pred CccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch-hcCHHHHHHHHHHh
Confidence 267788889999999998888887664222 23466666666654
No 219
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=98.41 E-value=9e-06 Score=57.02 Aligned_cols=111 Identities=11% Similarity=-0.033 Sum_probs=95.7
Q ss_pred CchHhHHHHHHHHHHHHHcCCH------HHHHHHHHHHHhcCCCC--------hHHHHHHHHHHHHcCChHHHHHHHHHH
Q 024419 2 AAEAEEMSLKDKGNEFFKAGNY------LKAAALYTQAIKQDPSN--------PTLFSNRAAAFLHLVKLNKALADAETT 67 (268)
Q Consensus 2 ~~~~~~~~~~~~g~~~~~~~~~------~~A~~~~~~al~~~p~~--------~~~~~~~a~~~~~~~~~~~A~~~~~~a 67 (268)
-.|.+.+.|+.....+...|+. +.-++.|++|+..-|-. ...|...|.. ...++.++|...|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 4678899999999999999999 89999999999987643 3566666744 6679999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHH
Q 024419 68 ISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSR 113 (268)
Q Consensus 68 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 113 (268)
+.++..++.+|...|.--.++|+...|.+.+.+++.+.|.....+.
T Consensus 87 ~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le 132 (161)
T 4h7y_A 87 RANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLE 132 (161)
T ss_dssp HHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHH
Confidence 9998899999999999999999999999999999999998766544
No 220
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.33 E-value=6.3e-05 Score=64.77 Aligned_cols=126 Identities=12% Similarity=-0.036 Sum_probs=77.0
Q ss_pred hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHH---------------------------------
Q 024419 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAA--------------------------------- 50 (268)
Q Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~--------------------------------- 50 (268)
|..+..|+..+..+...|+.+.|...|++|+.. |.+...|+..+..
T Consensus 210 p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l 288 (493)
T 2uy1_A 210 YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLL 288 (493)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHH
Confidence 455677788888888888888888888888888 8776555544332
Q ss_pred -------HHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 024419 51 -------FLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAME-QYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA 122 (268)
Q Consensus 51 -------~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 122 (268)
..+.++.+.|...|.++ ...+....+|...|.+-...+ +.+.|...|+.+++..|+.+..+...+......
T Consensus 289 w~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~ 367 (493)
T 2uy1_A 289 RINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRI 367 (493)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc
Confidence 11234456666666666 322223445555555544444 466666666666666666666555555555555
Q ss_pred HHHHHhHHH
Q 024419 123 KDKKRAQEV 131 (268)
Q Consensus 123 ~~~~~a~~~ 131 (268)
|+.+.|..+
T Consensus 368 ~~~~~aR~l 376 (493)
T 2uy1_A 368 GDEENARAL 376 (493)
T ss_dssp TCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 555555444
No 221
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.30 E-value=1.7e-06 Score=73.07 Aligned_cols=84 Identities=10% Similarity=-0.019 Sum_probs=68.6
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh----
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ--------DPSNPTLFSNRAAAFLHLVKLNKALADAETTISL---- 70 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---- 70 (268)
.|.-+..+.++|.++..+|+|++|+.++++++.+ +|.-+..++++|.+|..+|++++|+..+++|+.+
T Consensus 325 h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~ 404 (429)
T 3qwp_A 325 NIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVT 404 (429)
T ss_dssp SHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Confidence 4566788999999999999999999999999976 3344577999999999999999999999999976
Q ss_pred -CCCCH---HHHHHHHHHHH
Q 024419 71 -NPQWE---KGYFRKGCILE 86 (268)
Q Consensus 71 -~p~~~---~~~~~la~~~~ 86 (268)
-|+++ .++..++.+..
T Consensus 405 lG~~Hp~~~~~~~~l~~~~~ 424 (429)
T 3qwp_A 405 HGREHSLIEDLILLLEECDA 424 (429)
T ss_dssp TCTTSHHHHHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHH
Confidence 46665 34445555543
No 222
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.29 E-value=2.7e-06 Score=71.84 Aligned_cols=75 Identities=7% Similarity=-0.024 Sum_probs=65.0
Q ss_pred chHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh----
Q 024419 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ--------DPSNPTLFSNRAAAFLHLVKLNKALADAETTISL---- 70 (268)
Q Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---- 70 (268)
.|.-+..+.++|.+|..+|+|++|+.++++++++ +|.-+..++++|.+|..+|++++|+..|++|+.+
T Consensus 336 Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~ 415 (433)
T 3qww_A 336 NVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVA 415 (433)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence 4666788999999999999999999999999986 3444578999999999999999999999999986
Q ss_pred -CCCCHHH
Q 024419 71 -NPQWEKG 77 (268)
Q Consensus 71 -~p~~~~~ 77 (268)
-|+++.+
T Consensus 416 lG~~Hp~~ 423 (433)
T 3qww_A 416 HGKDHPYI 423 (433)
T ss_dssp TCTTCHHH
T ss_pred cCCCChHH
Confidence 5666644
No 223
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=98.25 E-value=3.4e-05 Score=53.03 Aligned_cols=82 Identities=9% Similarity=-0.031 Sum_probs=71.4
Q ss_pred CChHHHHHHHHHHHHcCCh---HHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q 024419 39 SNPTLFSNRAAAFLHLVKL---NKALADAETTISLNPQ-WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRK 114 (268)
Q Consensus 39 ~~~~~~~~~a~~~~~~~~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 114 (268)
-++.+.+++|+|+.+..+. .++|..++..++.+|. .-+.++.+|..++++|+|++|+.+.+.+|+++|+|..+...
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L 117 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 117 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 4678999999999998765 4799999999999985 47899999999999999999999999999999999988766
Q ss_pred HHHHHH
Q 024419 115 IKRVSQ 120 (268)
Q Consensus 115 l~~~~~ 120 (268)
...+..
T Consensus 118 k~~Ie~ 123 (134)
T 3o48_A 118 KSMVED 123 (134)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
No 224
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.24 E-value=0.0001 Score=51.30 Aligned_cols=82 Identities=9% Similarity=-0.038 Sum_probs=71.4
Q ss_pred CCCChHHHHHHHHHHHHcCCh---HHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHH
Q 024419 37 DPSNPTLFSNRAAAFLHLVKL---NKALADAETTISLNPQ-WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVS 112 (268)
Q Consensus 37 ~p~~~~~~~~~a~~~~~~~~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 112 (268)
++-+..+.+++|+|+.+..+. .+++..++..+..+|. .-+.++.+|..++++|+|++|..+.+.+|+.+|+|..+.
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 356789999999999998765 4799999999999985 568899999999999999999999999999999998886
Q ss_pred HHHHHH
Q 024419 113 RKIKRV 118 (268)
Q Consensus 113 ~~l~~~ 118 (268)
.....+
T Consensus 115 ~Lk~~I 120 (144)
T 1y8m_A 115 ALKSMV 120 (144)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655444
No 225
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.10 E-value=1.4e-05 Score=54.69 Aligned_cols=80 Identities=11% Similarity=0.030 Sum_probs=69.5
Q ss_pred HhHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhcC-C-CChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH
Q 024419 5 AEEMSLKDKGNEFFKAGNYLK---AAALYTQAIKQD-P-SNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYF 79 (268)
Q Consensus 5 ~~~~~~~~~g~~~~~~~~~~~---A~~~~~~al~~~-p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 79 (268)
...++-+..|.++....+..+ +|.+++..+..+ | ...+.++.+|..++++|+|++|..+++.+|+..|+|..+.-
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 457788999999999887776 999999999987 5 56789999999999999999999999999999999987765
Q ss_pred HHHHH
Q 024419 80 RKGCI 84 (268)
Q Consensus 80 ~la~~ 84 (268)
....+
T Consensus 113 Lk~~i 117 (126)
T 1nzn_A 113 LERLI 117 (126)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54433
No 226
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.80 E-value=0.00032 Score=48.19 Aligned_cols=79 Identities=11% Similarity=-0.026 Sum_probs=68.0
Q ss_pred hHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 024419 6 EEMSLKDKGNEFFKAGNY---LKAAALYTQAIKQDPS-NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK 81 (268)
Q Consensus 6 ~~~~~~~~g~~~~~~~~~---~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 81 (268)
.+.+-++.|.++....+. ..+|.+++..+..+|. ..+.++.+|..++++|+|+.|..+.+.+++..|+|..+.-..
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 467889999999988755 5799999999999984 578999999999999999999999999999999998776544
Q ss_pred HHH
Q 024419 82 GCI 84 (268)
Q Consensus 82 a~~ 84 (268)
..+
T Consensus 119 ~~I 121 (134)
T 3o48_A 119 SMV 121 (134)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 227
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.74 E-value=0.00062 Score=47.39 Aligned_cols=78 Identities=13% Similarity=-0.026 Sum_probs=67.4
Q ss_pred HhHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q 024419 5 AEEMSLKDKGNEFFKAGNY---LKAAALYTQAIKQDPS-NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFR 80 (268)
Q Consensus 5 ~~~~~~~~~g~~~~~~~~~---~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 80 (268)
...++-++.|.++....+. .++|.+++..+...|. ..+.++.+|..++++|+|++|..+.+.+|+..|+|..+.-.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~L 116 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 116 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 3567889999999988765 5799999999999884 56899999999999999999999999999999999776544
Q ss_pred HH
Q 024419 81 KG 82 (268)
Q Consensus 81 la 82 (268)
..
T Consensus 117 k~ 118 (144)
T 1y8m_A 117 KS 118 (144)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 228
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.69 E-value=0.0014 Score=56.30 Aligned_cols=119 Identities=9% Similarity=-0.005 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcC-ChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024419 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLV-KLNKALADAETTISLNPQWEKGYFRKGCIL 85 (268)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 85 (268)
...|...+......++.+.|...|.+| ...+....+|...|......+ +.+.|...|+.+++..|+.+..+...+...
T Consensus 286 ~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e 364 (493)
T 2uy1_A 286 DLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 345677777777788999999999999 443345677877787777666 699999999999999999998888888888
Q ss_pred HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHH
Q 024419 86 EAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQE 130 (268)
Q Consensus 86 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~ 130 (268)
...|+.+.|...|+++ +.....|..........|+.+.+..
T Consensus 365 ~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~ 405 (493)
T 2uy1_A 365 LRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRE 405 (493)
T ss_dssp HHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 8999999999999998 3456777776666666666665544
No 229
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.57 E-value=0.00052 Score=48.19 Aligned_cols=96 Identities=18% Similarity=0.129 Sum_probs=81.8
Q ss_pred hcCCCChHHHHHHHHHHHHcCCh------HHHHHHHHHHHhhCCC--------CHHHHHHHHHHHHHccCHHHHHHHHHH
Q 024419 35 KQDPSNPTLFSNRAAAFLHLVKL------NKALADAETTISLNPQ--------WEKGYFRKGCILEAMEQYDDALSAFQT 100 (268)
Q Consensus 35 ~~~p~~~~~~~~~a~~~~~~~~~------~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~~~~~~A~~~~~~ 100 (268)
-..|++.+.|..........|+. ++-++.|++|+..-|. .+..|...|.. ...++.++|.+.|+.
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~ 85 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQM 85 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHH
T ss_pred eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHH
Confidence 45899999999999999999999 8999999999987764 35667777754 566999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHHHHHHHhHHH
Q 024419 101 ALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV 131 (268)
Q Consensus 101 ~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 131 (268)
++.++...+.+|...++....+|+...|..+
T Consensus 86 a~~~hKkFAKiwi~~AqFEiRqgnl~kARkI 116 (161)
T 4h7y_A 86 ARANCKKFAFVHISFAQFELSQGNVKKSKQL 116 (161)
T ss_dssp HHHHCTTBHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 9999888899999999999999999999776
No 230
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.52 E-value=0.00084 Score=48.07 Aligned_cols=92 Identities=16% Similarity=0.140 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhC---CCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhC---CCC-
Q 024419 42 TLFSNRAAAFLHLVKLNKALADAETTISLN---PQW------EKGYFRKGCILEAMEQYDDALSAFQTALQYN---PQS- 108 (268)
Q Consensus 42 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---p~~------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~---p~~- 108 (268)
.+++.-...++..|.|+.|+-....++.+. |+- ..+++.+|.+++..++|..|...|+++|+.. |.+
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345555667788999999999999977663 331 3578999999999999999999999987552 111
Q ss_pred ---------------------HHHHHHHHHHHHHHHHHHHhHHHHh
Q 024419 109 ---------------------AEVSRKIKRVSQLAKDKKRAQEVEN 133 (268)
Q Consensus 109 ---------------------~~~~~~l~~~~~~~~~~~~a~~~~~ 133 (268)
.++.+.++.|+..++++++|+...+
T Consensus 101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le 146 (167)
T 3ffl_A 101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILD 146 (167)
T ss_dssp ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHh
Confidence 2678899999999999999987754
No 231
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=97.25 E-value=0.019 Score=41.20 Aligned_cols=100 Identities=11% Similarity=0.034 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHh--h--C------------
Q 024419 8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS--L--N------------ 71 (268)
Q Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~--~------------ 71 (268)
+--...+-.++-+|+|..|+-.+. .-+...+.+-.+.||....+|.+|+.+.++.++ . +
T Consensus 34 eY~lL~~I~LyyngEY~R~Lf~L~-----~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffv 108 (242)
T 3kae_A 34 EYRMLMSIVLYLNGEYTRALFHLH-----KLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFV 108 (242)
T ss_dssp CTHHHHHHHHHHTTCHHHHHHHHH-----TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSC
T ss_pred HHHhhhhhhhhhcchHhHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeee
Confidence 444567778889999998887753 234567777789999999999999999999982 2 2
Q ss_pred -CCCHHH-HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHH
Q 024419 72 -PQWEKG-YFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVS 112 (268)
Q Consensus 72 -p~~~~~-~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 112 (268)
|.+-+. +..+|.++.+.|+.++|+.+|......+|-.+.+-
T Consensus 109 d~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vE 151 (242)
T 3kae_A 109 DPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVE 151 (242)
T ss_dssp CTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHH
Confidence 334443 45569999999999999999999999988766554
No 232
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=97.12 E-value=0.0054 Score=52.49 Aligned_cols=80 Identities=8% Similarity=-0.017 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 024419 43 LFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA 122 (268)
Q Consensus 43 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 122 (268)
.+..+|.+..-...++.|..+|.+|+.++|++..+|.++|.+....|+.-+|+-+|-+++......+.+..++..++...
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~~ 233 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Confidence 55678888888889999999999999999999999999999999999999999999999988877899999888877643
No 233
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.07 E-value=0.052 Score=46.69 Aligned_cols=112 Identities=12% Similarity=0.040 Sum_probs=87.8
Q ss_pred CHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 024419 22 NYLKAAALYTQAIKQD-PSNPTLFSNRAAAFLHLVKLNKALADAETTISLN-PQWEKGYFRKGCILEAMEQYDDALSAFQ 99 (268)
Q Consensus 22 ~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~ 99 (268)
+.+.|.+.|++..... +-+..+|..+-.+|.+.|++++|...|++..... +-+...|..+-..+.+.|+.++|.+.|+
T Consensus 85 ~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~ 164 (501)
T 4g26_A 85 GLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDA 164 (501)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHH
Confidence 3688889998877653 2266788888899999999999999999887752 2256678888888999999999999999
Q ss_pred HHHhhC-CCCHHHHHHHHHHHHHHHHHHHhHHHHh
Q 024419 100 TALQYN-PQSAEVSRKIKRVSQLAKDKKRAQEVEN 133 (268)
Q Consensus 100 ~~l~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~ 133 (268)
...+.. .-+...+..+-..+...|+.++|.++..
T Consensus 165 ~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~ 199 (501)
T 4g26_A 165 HMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQ 199 (501)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 987653 2356677778888888888988887643
No 234
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=97.04 E-value=0.027 Score=46.79 Aligned_cols=94 Identities=17% Similarity=0.137 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----------------------hHHHHHHHHHHHHcCChHHHHHHHHH
Q 024419 9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN----------------------PTLFSNRAAAFLHLVKLNKALADAET 66 (268)
Q Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----------------------~~~~~~~a~~~~~~~~~~~A~~~~~~ 66 (268)
.+...|......|+.+.|...+.+|+.+-... ..+...++.++...|++.+|+..+..
T Consensus 117 ~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~ 196 (388)
T 2ff4_A 117 AEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEA 196 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34455666667899999999999999884321 02233456666777777777777777
Q ss_pred HHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 024419 67 TISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTAL 102 (268)
Q Consensus 67 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l 102 (268)
++..+|-+-.+|..+-.++...|+..+|+..|+++-
T Consensus 197 ~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 197 LTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777777777777777777777777777777777654
No 235
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=96.92 E-value=0.0093 Score=51.05 Aligned_cols=79 Identities=14% Similarity=0.015 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 024419 9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEA 87 (268)
Q Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 87 (268)
.+..+|........+..|..+|.+|+.+.|+++..++.+|.+....|+.-+|+-+|.+++.....++.+.-++...+..
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 5677899999999999999999999999999999999999999999999999999999999887889899888887765
No 236
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=96.86 E-value=0.04 Score=47.37 Aligned_cols=111 Identities=9% Similarity=-0.028 Sum_probs=89.0
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC-CCHHHHHHHHH
Q 024419 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQD-PSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP-QWEKGYFRKGC 83 (268)
Q Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~ 83 (268)
+...+..+...+.+.|++++|.+.+++..+.. +-+...|..+-..|.+.|+.++|.+.|++..+..- -+...|..+-.
T Consensus 104 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~ 183 (501)
T 4g26_A 104 NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLK 183 (501)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 45577888889999999999999999988753 23678888899999999999999999999987532 25667888999
Q ss_pred HHHHccCHHHHHHHHHHHHhh--CCCCHHHHHHHHH
Q 024419 84 ILEAMEQYDDALSAFQTALQY--NPQSAEVSRKIKR 117 (268)
Q Consensus 84 ~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~l~~ 117 (268)
++.+.|+.++|.+.+++.-+. .|+. ..+..+..
T Consensus 184 ~~~~~g~~d~A~~ll~~Mr~~g~~ps~-~T~~~l~~ 218 (501)
T 4g26_A 184 VSMDTKNADKVYKTLQRLRDLVRQVSK-STFDMIEE 218 (501)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTSSBCH-HHHHHHHH
T ss_pred HHhhCCCHHHHHHHHHHHHHhCCCcCH-HHHHHHHH
Confidence 999999999999999998654 4543 33333433
No 237
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.84 E-value=0.0047 Score=55.46 Aligned_cols=61 Identities=16% Similarity=0.124 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHH
Q 024419 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETT 67 (268)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 67 (268)
...+...+..+...|+|+-|+.+.++|+...|.+...|..++.||..+|+|+.|+-.+..+
T Consensus 337 ~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 337 SDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 4467778888999999999999999999999999999999999999999999999887666
No 238
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=96.76 E-value=0.03 Score=43.50 Aligned_cols=62 Identities=21% Similarity=0.244 Sum_probs=58.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHH
Q 024419 15 NEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEK 76 (268)
Q Consensus 15 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~ 76 (268)
..+++.|+.++|++.....++.+|.++.....+...+.-.|+++.|...++.+.+++|....
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~ 66 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 66 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence 45678899999999999999999999999999999999999999999999999999998753
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.62 E-value=0.013 Score=52.69 Aligned_cols=111 Identities=15% Similarity=0.052 Sum_probs=79.1
Q ss_pred cCC-HHHHHHHHHHHHhcCCCChHHHHHHHHHHH--H-cCChHHHHHHHHHHHhh--------CCCC----------HHH
Q 024419 20 AGN-YLKAAALYTQAIKQDPSNPTLFSNRAAAFL--H-LVKLNKALADAETTISL--------NPQW----------EKG 77 (268)
Q Consensus 20 ~~~-~~~A~~~~~~al~~~p~~~~~~~~~a~~~~--~-~~~~~~A~~~~~~al~~--------~p~~----------~~~ 77 (268)
.++ ++.|+.++++....+|..... +..+.+.. . ..+--+|+....++++. .+.+ ...
T Consensus 261 t~~~~~~a~~~le~L~~~~p~~~~~-~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L 339 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKDPIHDIY-YKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL 339 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHCGGGHHH-HHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhhCCchhHH-HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence 445 578999999999988866432 22332221 1 23345677777777642 2333 224
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHH
Q 024419 78 YFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV 131 (268)
Q Consensus 78 ~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 131 (268)
+..-+.-+...|+++.|+++-++++...|.....|..|+.+|..+|+++.|.-.
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLt 393 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFA 393 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHH
Confidence 444566677789999999999999999999999999999999999999999654
No 240
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.98 E-value=0.063 Score=45.18 Aligned_cols=99 Identities=12% Similarity=0.075 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhC---CCC---HHHHH
Q 024419 9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPS---NPTLFSNRAAAFLHLVKLNKALADAETTISLN---PQW---EKGYF 79 (268)
Q Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---p~~---~~~~~ 79 (268)
++..+|..++..|++++|.+.|.++...... ..+.++....++...+++..+...+.++-.+- ++. .....
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 5678999999999999999999999886543 35788889999999999999999999986652 221 23445
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 024419 80 RKGCILEAMEQYDDALSAFQTALQYNPQ 107 (268)
Q Consensus 80 ~la~~~~~~~~~~~A~~~~~~~l~~~p~ 107 (268)
..|.++...++|.+|...|-.++.....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~~~ 240 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLATFTS 240 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHhChHHHHHHHHHHHhccCCc
Confidence 5677888899999999999888766443
No 241
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=95.90 E-value=0.13 Score=42.66 Aligned_cols=95 Identities=17% Similarity=0.089 Sum_probs=75.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCC------ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhC---CCC----HHH
Q 024419 11 KDKGNEFFKAGNYLKAAALYTQAIKQDPS------NPTLFSNRAAAFLHLVKLNKALADAETTISLN---PQW----EKG 77 (268)
Q Consensus 11 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---p~~----~~~ 77 (268)
..+|..++..|+|.+|+..+.+.++.... -.+++..-..+|..++++.++...+.++.... +.+ +..
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i 182 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGAL 182 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence 37899999999999999999998875322 14667778889999999999999999987653 122 344
Q ss_pred HHHHHHHHH-HccCHHHHHHHHHHHHhhC
Q 024419 78 YFRKGCILE-AMEQYDDALSAFQTALQYN 105 (268)
Q Consensus 78 ~~~la~~~~-~~~~~~~A~~~~~~~l~~~ 105 (268)
...-|..+. ..++|..|...|-.+++-.
T Consensus 183 ~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f 211 (394)
T 3txn_A 183 DLQSGILHAADERDFKTAFSYFYEAFEGF 211 (394)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence 556688888 8999999999999887543
No 242
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.79 E-value=0.2 Score=45.30 Aligned_cols=103 Identities=13% Similarity=-0.026 Sum_probs=49.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccC
Q 024419 11 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQ 90 (268)
Q Consensus 11 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 90 (268)
......+...|.+++|++..+ +.... .......|+++.|.+..+ ..++...|..+|..+...++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~--------~~~~~---f~~~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~ 696 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISP--------DQDQK---FELALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFN 696 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC--------CHHHH---HHHHHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCChHHheecCC--------Ccchh---eehhhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCC
Confidence 334444555666666655431 11111 222345566666655532 22445556666666666666
Q ss_pred HHHHHHHHHHHH--------hhCCCCHHHHHHHHHHHHHHHHHHHhH
Q 024419 91 YDDALSAFQTAL--------QYNPQSAEVSRKIKRVSQLAKDKKRAQ 129 (268)
Q Consensus 91 ~~~A~~~~~~~l--------~~~p~~~~~~~~l~~~~~~~~~~~~a~ 129 (268)
++.|+.+|.++= .....+.+.+..++.+....|++..|.
T Consensus 697 ~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~ 743 (814)
T 3mkq_A 697 FKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAF 743 (814)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHH
Confidence 666666665531 112334444444444444444444443
No 243
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.64 E-value=0.071 Score=44.20 Aligned_cols=62 Identities=13% Similarity=0.118 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 024419 8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS 69 (268)
Q Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 69 (268)
.++..++..+...|++.+|+..+.+++..+|-+..++..+-.++...|+..+|+..|+++-.
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45566788889999999999999999999999999999999999999999999999988754
No 244
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.62 E-value=0.31 Score=35.36 Aligned_cols=68 Identities=10% Similarity=-0.046 Sum_probs=50.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHH
Q 024419 15 NEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDA 94 (268)
Q Consensus 15 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A 94 (268)
......|+++.|.+..+.. ++...|..+|...+..|+++-|+.+|.++-.. -.+..+|...|+.+.-
T Consensus 13 ~LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~--------~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHSF--------DKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH--------HHHHHHHHHHTCHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH--------HHHHHHHHHhCCHHHH
Confidence 3457789999999997765 57889999999999999999999999887322 2333445555665443
Q ss_pred H
Q 024419 95 L 95 (268)
Q Consensus 95 ~ 95 (268)
.
T Consensus 80 ~ 80 (177)
T 3mkq_B 80 S 80 (177)
T ss_dssp H
T ss_pred H
Confidence 3
No 245
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=95.50 E-value=0.15 Score=39.63 Aligned_cols=63 Identities=14% Similarity=0.015 Sum_probs=58.1
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHH
Q 024419 50 AFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVS 112 (268)
Q Consensus 50 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 112 (268)
-.++.|+.++|++.....++.+|.++.....+-..+.-.|+++.|..-++.+.+++|.....-
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a 68 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA 68 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHH
Confidence 456789999999999999999999999999999999999999999999999999999876543
No 246
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.08 E-value=0.42 Score=43.18 Aligned_cols=106 Identities=12% Similarity=0.006 Sum_probs=72.4
Q ss_pred HHHHHcCCHHHHHH-HHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHH
Q 024419 15 NEFFKAGNYLKAAA-LYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDD 93 (268)
Q Consensus 15 ~~~~~~~~~~~A~~-~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 93 (268)
......+++++|.+ .+ ..-| +..........+...|.++.|+...+ ++...+. .....|++++
T Consensus 607 ~~~~~~~~~~~a~~~~l----~~i~-~~~~~~~~~~~l~~~~~~~~a~~~~~--------~~~~~f~---~~l~~~~~~~ 670 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVL----PNVE-GKDSLTKIARFLEGQEYYEEALNISP--------DQDQKFE---LALKVGQLTL 670 (814)
T ss_dssp HHHHHTTCHHHHHHHTG----GGCC-CHHHHHHHHHHHHHTTCHHHHHHHCC--------CHHHHHH---HHHHHTCHHH
T ss_pred hHHHHhCCHHHHHHHHH----hcCC-chHHHHHHHHHHHhCCChHHheecCC--------Ccchhee---hhhhcCCHHH
Confidence 34467899999877 44 1111 02223666777888899888886542 3333333 4567899999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHh
Q 024419 94 ALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMV 141 (268)
Q Consensus 94 A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 141 (268)
|.+..+ ..+++..|..+|......++++.|+..+.........
T Consensus 671 A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l 713 (814)
T 3mkq_A 671 ARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESL 713 (814)
T ss_dssp HHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHH
T ss_pred HHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhh
Confidence 988754 3467899999999999999999999886554444443
No 247
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.95 E-value=0.7 Score=38.97 Aligned_cols=99 Identities=14% Similarity=0.041 Sum_probs=78.4
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------ChHHHHHHHHHHHHcCChHHHHHHHHHHHh---hCCCCH-
Q 024419 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPS------NPTLFSNRAAAFLHLVKLNKALADAETTIS---LNPQWE- 75 (268)
Q Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~---~~p~~~- 75 (268)
.++.-..++..+...|++.+|...+.......-. -.+++.....+|...+++.+|...++++.. -.+..+
T Consensus 136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~ 215 (445)
T 4b4t_P 136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYES 215 (445)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHH
Confidence 3555678899999999999999999998653211 157788889999999999999999998742 233333
Q ss_pred ---HHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 024419 76 ---KGYFRKGCILEAMEQYDDALSAFQTALQY 104 (268)
Q Consensus 76 ---~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 104 (268)
..+...|..+...++|.+|-.+|..++..
T Consensus 216 lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 216 LKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 45677789999999999999999988764
No 248
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=94.16 E-value=1.5 Score=41.66 Aligned_cols=93 Identities=12% Similarity=-0.010 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc---C--------------------CCChHHHHHHHHHHHHcCChHHHHHHH
Q 024419 8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQ---D--------------------PSNPTLFSNRAAAFLHLVKLNKALADA 64 (268)
Q Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~--------------------p~~~~~~~~~a~~~~~~~~~~~A~~~~ 64 (268)
-.-+.+|.++...|++++|.++|.++-.- + ...+..|.++...+.+.+-++.+++..
T Consensus 843 ~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa 922 (1139)
T 4fhn_B 843 IAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFS 922 (1139)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34477888888888888888888776211 0 011245666677777777788888877
Q ss_pred HHHHhhCCC-CH----HHHHHHHHHHHHccCHHHHHHHHHH
Q 024419 65 ETTISLNPQ-WE----KGYFRKGCILEAMEQYDDALSAFQT 100 (268)
Q Consensus 65 ~~al~~~p~-~~----~~~~~la~~~~~~~~~~~A~~~~~~ 100 (268)
+.|++..+. +. ..|.++=..+...|+|++|...+..
T Consensus 923 ~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~ 963 (1139)
T 4fhn_B 923 LLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMV 963 (1139)
T ss_dssp HHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred HHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 777776433 22 2455566667777788777665543
No 249
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=94.04 E-value=1 Score=42.80 Aligned_cols=116 Identities=17% Similarity=0.062 Sum_probs=83.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHh---hC-----------------
Q 024419 12 DKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS---LN----------------- 71 (268)
Q Consensus 12 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~---~~----------------- 71 (268)
.+...+...+.++-|.+ .+...|.++..-+-+|.++...|++++|..+|+++-. .+
T Consensus 817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 34455666677765544 3456778887789999999999999999999988732 11
Q ss_pred ---CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC-CCHH----HHHHHHHHHHHHHHHHHhHHH
Q 024419 72 ---PQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNP-QSAE----VSRKIKRVSQLAKDKKRAQEV 131 (268)
Q Consensus 72 ---p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~----~~~~l~~~~~~~~~~~~a~~~ 131 (268)
...+..|..+..++.+.+.++.+++.-+.|++..+ ++.. .|..+=......+++++|-..
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~a 960 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVA 960 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHH
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHH
Confidence 11234567778889999999999999999998765 3332 455666666677888887443
No 250
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=94.02 E-value=1.6 Score=40.82 Aligned_cols=96 Identities=8% Similarity=-0.094 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh--CCCCHHHHHHH
Q 024419 8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQ----DPSNPTLFSNRAAAFLHLVKLNKALADAETTISL--NPQWEKGYFRK 81 (268)
Q Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 81 (268)
..+..+-..+.+.|+.++|...+.+..+. ..-+...|..+-..|.+.|+.++|.+.|++.... .| +...|..+
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P-DvvTYntL 206 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP-DLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-cHHHHHHH
Confidence 45778888999999999999999775432 2347789999999999999999999999999875 45 55677777
Q ss_pred HHHHHHccC-HHHHHHHHHHHHhh
Q 024419 82 GCILEAMEQ-YDDALSAFQTALQY 104 (268)
Q Consensus 82 a~~~~~~~~-~~~A~~~~~~~l~~ 104 (268)
-.++.+.|+ .++|.+.|++..+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHc
Confidence 778888887 57888888887764
No 251
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=93.85 E-value=1.2 Score=36.77 Aligned_cols=124 Identities=14% Similarity=0.023 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHH-----HHHHHHHHH-cCChHHHHHHHHHHHhhCCCC----HH-
Q 024419 8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLF-----SNRAAAFLH-LVKLNKALADAETTISLNPQW----EK- 76 (268)
Q Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-----~~~a~~~~~-~~~~~~A~~~~~~al~~~p~~----~~- 76 (268)
.+...+|..+...|++++-.+++......-+.-+.+. ..+-..+.. .+..+.-++.+..+++-..+. ..
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778999999999999998888776654432222111 111111111 233344444444444321111 11
Q ss_pred -HHHHHHHHHHHccCHHHHHHHHHHHHhhCC--CC----HHHHHHHHHHHHHHHHHHHhHHH
Q 024419 77 -GYFRKGCILEAMEQYDDALSAFQTALQYNP--QS----AEVSRKIKRVSQLAKDKKRAQEV 131 (268)
Q Consensus 77 -~~~~la~~~~~~~~~~~A~~~~~~~l~~~p--~~----~~~~~~l~~~~~~~~~~~~a~~~ 131 (268)
.-..+|..|...|+|.+|.+.+.+.++.-. ++ .+++..-.+++..+++..++...
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~ 161 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAA 161 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHH
Confidence 222567777777777777666666654321 11 23444444555555555555444
No 252
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=92.13 E-value=2.5 Score=30.60 Aligned_cols=55 Identities=22% Similarity=0.079 Sum_probs=44.4
Q ss_pred CChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 024419 39 SNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTA 101 (268)
Q Consensus 39 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 101 (268)
+++...+.++ .+.|+++.|.+..+.. ++...|..+|......|+++-|..+|.++
T Consensus 6 ~D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 6 QDPHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp SCHHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred CChHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 3455555555 6789999999887655 56788999999999999999999999887
No 253
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.93 E-value=0.97 Score=38.69 Aligned_cols=66 Identities=17% Similarity=0.130 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 024419 41 PTLFSNRAAAFLHLVKLNKALADAETTISLNPQW-------EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS 108 (268)
Q Consensus 41 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~ 108 (268)
+.++..+=..|...+.+++|.....++. .|.+ ...++.+|.++...++|.+|.+++..|+...|.+
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 4667778889999999999999999985 4432 4567788999999999999999999999998865
No 254
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.32 E-value=0.77 Score=38.51 Aligned_cols=65 Identities=5% Similarity=-0.107 Sum_probs=56.1
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC--C-CHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 024419 40 NPTLFSNRAAAFLHLVKLNKALADAETTISLNP--Q-WEKGYFRKGCILEAMEQYDDALSAFQTALQY 104 (268)
Q Consensus 40 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~-~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 104 (268)
-..++..+|..|...|+++.|.+.|.++..... . -.+.++....++...+++..+...+.++..+
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~ 197 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSM 197 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 356889999999999999999999999887533 2 3688888899999999999999999998765
No 255
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=89.31 E-value=1.7 Score=38.34 Aligned_cols=80 Identities=13% Similarity=-0.006 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 024419 23 YLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTAL 102 (268)
Q Consensus 23 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l 102 (268)
..++...+.+.....+++ ...-.++...++.|+++.|...+.+.-...+......+.+|.++...|+.++|...|+++.
T Consensus 268 ~~~~~~~~~~~~~~~~~~-~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 268 TDEQAKWRDDAIMRSQST-SLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLM 346 (618)
T ss_dssp CHHHHHHHHHHHHTCCCH-HHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ChHHHHHHHhccccCCCh-HHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 344455555544333222 2222233333455777777777765544333446667777777777777777777777765
Q ss_pred h
Q 024419 103 Q 103 (268)
Q Consensus 103 ~ 103 (268)
.
T Consensus 347 ~ 347 (618)
T 1qsa_A 347 Q 347 (618)
T ss_dssp T
T ss_pred c
Confidence 4
No 256
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=87.44 E-value=8.3 Score=35.95 Aligned_cols=95 Identities=22% Similarity=0.100 Sum_probs=68.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHh-hC-------------------
Q 024419 12 DKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS-LN------------------- 71 (268)
Q Consensus 12 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-~~------------------- 71 (268)
.+...+...|.++-|. ..+...|.++..-+-+|.+|...|++++|..+|++|-. +.
T Consensus 815 ~l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~ 890 (950)
T 4gq2_M 815 ELVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 890 (950)
T ss_dssp HHHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHT
T ss_pred HHHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcc
Confidence 3566677778777554 35677888887778899999999999999999987742 11
Q ss_pred -CC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-CCCCHH
Q 024419 72 -PQ--WEKGYFRKGCILEAMEQYDDALSAFQTALQY-NPQSAE 110 (268)
Q Consensus 72 -p~--~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~-~p~~~~ 110 (268)
+. ....|.....++...+-++-+++..+.|++. .++++.
T Consensus 891 e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~ 933 (950)
T 4gq2_M 891 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDED 933 (950)
T ss_dssp TTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHH
T ss_pred cccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCcc
Confidence 11 1235666778888888898888888888864 445544
No 257
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=87.36 E-value=2.3 Score=25.75 Aligned_cols=32 Identities=25% Similarity=0.299 Sum_probs=21.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChH
Q 024419 11 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPT 42 (268)
Q Consensus 11 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~ 42 (268)
..+|..+...|++++|+.+|-+|+...|+-..
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~ 52 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ 52 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence 34677777777777777777777777665443
No 258
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.26 E-value=1.5 Score=37.63 Aligned_cols=68 Identities=13% Similarity=0.088 Sum_probs=57.2
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 024419 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN-------PTLFSNRAAAFLHLVKLNKALADAETTISLNPQW 74 (268)
Q Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 74 (268)
..+..+..+-..|...+.|++|..+..++. .|.+ ...++..|.++.-.++|.+|.+++..|+...|.+
T Consensus 229 ~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 229 TKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred hhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 445567778888999999999999999985 4432 4677788999999999999999999999988764
No 259
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=86.52 E-value=15 Score=34.56 Aligned_cols=89 Identities=6% Similarity=-0.162 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh--CCCCHHHHHHH
Q 024419 42 TLFSNRAAAFLHLVKLNKALADAETTISL----NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQY--NPQSAEVSRKI 115 (268)
Q Consensus 42 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~l 115 (268)
..+..+-.+|.+.|+.++|...|...-+. -.-+...|..+-..+.+.|++++|.+.|++..+. .| |...|..+
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P-DvvTYntL 206 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP-DLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-cHHHHHHH
Confidence 35777888999999999999999775432 2336678899999999999999999999999765 35 55666666
Q ss_pred HHHHHHHHH-HHHhHHH
Q 024419 116 KRVSQLAKD-KKRAQEV 131 (268)
Q Consensus 116 ~~~~~~~~~-~~~a~~~ 131 (268)
-..+...|. .+.|.++
T Consensus 207 I~glcK~G~~~e~A~~L 223 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERC 223 (1134)
T ss_dssp HHHHHHHTCCHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHH
Confidence 666666665 3556544
No 260
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=85.30 E-value=6.2 Score=27.34 Aligned_cols=55 Identities=13% Similarity=-0.040 Sum_probs=39.7
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 024419 50 AFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQY 104 (268)
Q Consensus 50 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 104 (268)
....+|+-++-.+.+...+.-+|-++..++.+|.+|.+.|+..+|-+.+.+|-+.
T Consensus 100 ~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 100 ILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 4566777777666666666666667888888888888888888888888777654
No 261
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=85.22 E-value=1.8 Score=27.16 Aligned_cols=30 Identities=17% Similarity=0.282 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 024419 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIK 35 (268)
Q Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 35 (268)
.+..+...|-..-..|+|++|+.+|..+++
T Consensus 15 ~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 15 AAATVLKRAVELDSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555566666666666666666655554
No 262
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=82.28 E-value=11 Score=27.84 Aligned_cols=77 Identities=10% Similarity=0.060 Sum_probs=57.6
Q ss_pred HHHHHHHhc---------CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHccCHHHHHH
Q 024419 28 ALYTQAIKQ---------DPSNPTLFSNRAAAFLHLVKLNKALADAETTISL--NPQWEKGYFRKGCILEAMEQYDDALS 96 (268)
Q Consensus 28 ~~~~~al~~---------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~ 96 (268)
..+++++.. ||....+|...+.++ ..++...+...|...... --..+..|...|..+...|++.+|.+
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~ 136 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKV 136 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 566777664 333346677777655 234467888888877764 45578889999999999999999999
Q ss_pred HHHHHHhhC
Q 024419 97 AFQTALQYN 105 (268)
Q Consensus 97 ~~~~~l~~~ 105 (268)
.|+.+++..
T Consensus 137 Vy~~GI~~~ 145 (202)
T 3esl_A 137 LLELGAENN 145 (202)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHcC
Confidence 999999865
No 263
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=82.00 E-value=3 Score=37.07 Aligned_cols=47 Identities=11% Similarity=-0.021 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Q 024419 43 LFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAME 89 (268)
Q Consensus 43 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 89 (268)
.....|...+..|+|.-|.+....++..+|+|..+...++.+|.++|
T Consensus 451 ~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~ 497 (658)
T 2cfu_A 451 RLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLG 497 (658)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 33344444444445555555555555555555444444454444444
No 264
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=81.89 E-value=9.9 Score=26.36 Aligned_cols=120 Identities=13% Similarity=0.078 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh------------------HHHHHHHHHH--HHcCChHHHHHHHHHH
Q 024419 8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP------------------TLFSNRAAAF--LHLVKLNKALADAETT 67 (268)
Q Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~------------------~~~~~~a~~~--~~~~~~~~A~~~~~~a 67 (268)
.--..-|.-+...|..++.++...+..+-.|-+. ..+-.+|..+ ...|+...-+.+|-+.
T Consensus 8 ~kkLmeAK~~ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~ 87 (172)
T 1wy6_A 8 IRKLMDAKKFLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVIN 87 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHh
Confidence 3345567778889999999999999887665432 2233344432 3457788888887654
Q ss_pred HhhCCCCHHHHHHHH-HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419 68 ISLNPQWEKGYFRKG-CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE 132 (268)
Q Consensus 68 l~~~p~~~~~~~~la-~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 132 (268)
=. .+ -|+.+| ..+...|+-++=.+.+...+.-+|-+++.+..++..|...|...+|.++.
T Consensus 88 n~---~s--e~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl 148 (172)
T 1wy6_A 88 NT---LN--EHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLL 148 (172)
T ss_dssp TC---CC--HHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cc---hH--HHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHH
Confidence 22 22 345555 45667888888778888877778888999999999999999999988764
No 265
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=81.56 E-value=13 Score=26.89 Aligned_cols=109 Identities=12% Similarity=0.127 Sum_probs=77.8
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHH
Q 024419 16 EFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDAL 95 (268)
Q Consensus 16 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~ 95 (268)
-.++-.+|+.++=.-.-. -|..++..+.++.+++-.|+|..|+-.+. +-+...+.+..+.||...++|..|+
T Consensus 11 Ks~kY~dYdt~~fLsa~L---~~~~~eY~lL~~I~LyyngEY~R~Lf~L~-----~lNT~Ts~YYk~LCy~klKdYkkA~ 82 (242)
T 3kae_A 11 KSIRYRDYETAIFLAACL---LPCKPEYRMLMSIVLYLNGEYTRALFHLH-----KLNTCTSKYYESLCYKKKKDYKKAI 82 (242)
T ss_dssp HHHHTTCHHHHHHHHHHH---C----CTHHHHHHHHHHTTCHHHHHHHHH-----TCCBHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhhcccccHHHHHHHHH---ccCChHHHhhhhhhhhhcchHhHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788776443332 44455777788999999999998876653 2345667788899999999999999
Q ss_pred HHHHHHH--hh---------------CCCCHH-HHHHHHHHHHHHHHHHHhHHHH
Q 024419 96 SAFQTAL--QY---------------NPQSAE-VSRKIKRVSQLAKDKKRAQEVE 132 (268)
Q Consensus 96 ~~~~~~l--~~---------------~p~~~~-~~~~l~~~~~~~~~~~~a~~~~ 132 (268)
.++++.+ ++ +|.+.+ .+..+|.+....|..++|+...
T Consensus 83 ~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~ 137 (242)
T 3kae_A 83 KSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHY 137 (242)
T ss_dssp HHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHh
Confidence 9999999 23 244444 4567788888889999997653
No 266
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=80.59 E-value=18 Score=29.36 Aligned_cols=59 Identities=14% Similarity=0.152 Sum_probs=44.0
Q ss_pred HHHHHHHHHhh-----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh------CCCCHHHHHHHHHH
Q 024419 60 ALADAETTISL-----NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQY------NPQSAEVSRKIKRV 118 (268)
Q Consensus 60 A~~~~~~al~~-----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~------~p~~~~~~~~l~~~ 118 (268)
++..|.+++.. +..++..|..+|-.+++.+++.+|+..+..+-.. ..++.++|..+-.+
T Consensus 276 ~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~eI 345 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGYVAGKYNYSKDDEEMYKEFHEI 345 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Confidence 67777777754 4567889999999999999999999998887543 23456666655544
No 267
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=79.72 E-value=2.9 Score=25.99 Aligned_cols=16 Identities=13% Similarity=0.397 Sum_probs=7.5
Q ss_pred HccCHHHHHHHHHHHH
Q 024419 87 AMEQYDDALSAFQTAL 102 (268)
Q Consensus 87 ~~~~~~~A~~~~~~~l 102 (268)
..|++++|+..|..++
T Consensus 31 ~~g~y~eAl~lY~~ai 46 (83)
T 2w2u_A 31 KEGNAEEAITNYKKAI 46 (83)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHH
Confidence 4455555444444443
No 268
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=79.51 E-value=7 Score=28.91 Aligned_cols=38 Identities=8% Similarity=0.019 Sum_probs=26.2
Q ss_pred hHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Q 024419 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP 41 (268)
Q Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~ 41 (268)
+..+.-.+-+|..++.+++|.+|-+.+..|+...|.+.
T Consensus 11 ~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~ 48 (203)
T 3t5x_A 11 AQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS 48 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH
Confidence 34455666777777777777777777777777766553
No 269
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=78.93 E-value=4.3 Score=25.64 Aligned_cols=28 Identities=18% Similarity=0.294 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 024419 7 EMSLKDKGNEFFKAGNYLKAAALYTQAI 34 (268)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al 34 (268)
+...-.++..+...|+|++||++.+++.
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 3444556666666666666666655543
No 270
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=78.92 E-value=3.6 Score=25.73 Aligned_cols=32 Identities=25% Similarity=0.502 Sum_probs=21.4
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 024419 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ 36 (268)
Q Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 36 (268)
..++.+...|..++..++|.+|...++++...
T Consensus 51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~ 82 (106)
T 2vkj_A 51 KKARSLIAEGKDLFETANYGEALVFFEKALNL 82 (106)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHHHcc
Confidence 45566666777777777777777777776654
No 271
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=78.89 E-value=3.2 Score=25.80 Aligned_cols=11 Identities=18% Similarity=-0.064 Sum_probs=4.9
Q ss_pred HHHHHHHHHHh
Q 024419 59 KALADAETTIS 69 (268)
Q Consensus 59 ~A~~~~~~al~ 69 (268)
+|+....+|++
T Consensus 10 ~Ai~lv~~Ave 20 (83)
T 2v6y_A 10 MARKYAILAVK 20 (83)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 272
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=78.24 E-value=9.7 Score=23.57 Aligned_cols=29 Identities=24% Similarity=0.159 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 024419 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIK 35 (268)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 35 (268)
+-.+..+|...-..|+|++|+.+|..+++
T Consensus 19 Ai~lv~~Ave~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 19 ARKYAINAVKADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33455556566666666666666666554
No 273
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=78.23 E-value=33 Score=30.19 Aligned_cols=121 Identities=7% Similarity=-0.154 Sum_probs=77.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHH----HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024419 11 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTL----FSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILE 86 (268)
Q Consensus 11 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~----~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 86 (268)
...+......++.+.|...+.......+-+... +..+|.-....+...++...+.+.....++....-...+ ...
T Consensus 218 ~~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r-~Al 296 (618)
T 1qsa_A 218 AAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVR-MAL 296 (618)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHH-HHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHH-HHH
Confidence 334555556668899999998876544333322 222333333334356777777776654444333333334 444
Q ss_pred HccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhHHHH
Q 024419 87 AMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE 132 (268)
Q Consensus 87 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~ 132 (268)
..|+++.|...|.+.-...+......+-+|..+...|+.++|..+.
T Consensus 297 r~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~ 342 (618)
T 1qsa_A 297 GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEIL 342 (618)
T ss_dssp HHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHH
Confidence 6799999999998876544456778888999888888888887653
No 274
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=77.05 E-value=5.4 Score=25.17 Aligned_cols=26 Identities=23% Similarity=0.172 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHH
Q 024419 43 LFSNRAAAFLHLVKLNKALADAETTI 68 (268)
Q Consensus 43 ~~~~~a~~~~~~~~~~~A~~~~~~al 68 (268)
.+-.++..+...|+|++||++.+++.
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 34456666777777777777665553
No 275
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=76.10 E-value=10 Score=22.81 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=19.9
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH
Q 024419 79 FRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111 (268)
Q Consensus 79 ~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 111 (268)
..+|..+...|++++|..+|-+|+...|.=...
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~L 53 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQL 53 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 345666666666666666666666666654433
No 276
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=75.24 E-value=4.1 Score=25.99 Aligned_cols=29 Identities=28% Similarity=0.343 Sum_probs=18.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 024419 11 KDKGNEFFKAGNYLKAAALYTQAIKQDPS 39 (268)
Q Consensus 11 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 39 (268)
..+|..+...|+++.|+.+|-+|+...|+
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 34666666666666666666666666554
No 277
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=75.19 E-value=30 Score=28.75 Aligned_cols=60 Identities=13% Similarity=0.084 Sum_probs=45.2
Q ss_pred HHHHHHHHHhh-----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHH
Q 024419 60 ALADAETTISL-----NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQY------NPQSAEVSRKIKRVS 119 (268)
Q Consensus 60 A~~~~~~al~~-----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~------~p~~~~~~~~l~~~~ 119 (268)
++..|.+++.. +..++..|..+|-.+++.+++.+|+..+..+-.. ..++.++|..+-.+.
T Consensus 298 ~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~eIA 368 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFFEVA 368 (550)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHH
Confidence 56677777654 4467889999999999999999999998887543 345677777665553
No 278
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=75.03 E-value=6.4 Score=24.44 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=10.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 024419 10 LKDKGNEFFKAGNYLKAAALYTQAI 34 (268)
Q Consensus 10 ~~~~g~~~~~~~~~~~A~~~~~~al 34 (268)
+...|...-..|+|++|+.+|..++
T Consensus 16 l~~~Av~~D~~g~y~eAl~~Y~~ai 40 (85)
T 2v6x_A 16 LVQKAIDLDTATQYEEAYTAYYNGL 40 (85)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3334444444444444444444433
No 279
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=74.45 E-value=11 Score=27.94 Aligned_cols=35 Identities=6% Similarity=-0.180 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH
Q 024419 41 PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWE 75 (268)
Q Consensus 41 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~ 75 (268)
...++.+|.+++..++|.+|.+++..|+...|...
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~ 48 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS 48 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH
Confidence 35667788888888888888888888888877653
No 280
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=73.63 E-value=21 Score=25.23 Aligned_cols=61 Identities=7% Similarity=0.112 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hHHHHH------HHHHHHHcCChHHHHHHHHHHHh
Q 024419 9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---PTLFSN------RAAAFLHLVKLNKALADAETTIS 69 (268)
Q Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~------~a~~~~~~~~~~~A~~~~~~al~ 69 (268)
.-+..|..++..|+|=+|=+.++.+-...+.. ..+|.. .|..+.+.|+...|...+.+++.
T Consensus 34 ~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 34 RAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33556666666677777777777666655433 112211 22233445555555555555544
No 281
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=73.02 E-value=7.5 Score=24.67 Aligned_cols=15 Identities=20% Similarity=0.151 Sum_probs=6.5
Q ss_pred cCChHHHHHHHHHHH
Q 024419 54 LVKLNKALADAETTI 68 (268)
Q Consensus 54 ~~~~~~A~~~~~~al 68 (268)
.|+|++|+.+|..++
T Consensus 28 ~g~y~eAl~~Y~~Ai 42 (93)
T 1wfd_A 28 ESRYQQALVCYQEGI 42 (93)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHH
Confidence 344444444444443
No 282
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=72.27 E-value=14 Score=22.72 Aligned_cols=29 Identities=21% Similarity=0.131 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 024419 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIK 35 (268)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 35 (268)
+-.+...|...-..|+|++|+.+|..+++
T Consensus 11 Ai~lv~~Ave~D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 11 ARKYAILAVKADKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 44455566666666676666666666554
No 283
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=71.80 E-value=13 Score=31.35 Aligned_cols=87 Identities=8% Similarity=-0.017 Sum_probs=64.0
Q ss_pred CHHHHHHHHHHHHhcCCCC------------h----HHHHHHHHHHHHcCChHHHHHHHHHHHhhCC--C--------CH
Q 024419 22 NYLKAAALYTQAIKQDPSN------------P----TLFSNRAAAFLHLVKLNKALADAETTISLNP--Q--------WE 75 (268)
Q Consensus 22 ~~~~A~~~~~~al~~~p~~------------~----~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~--------~~ 75 (268)
..++|.....++....-++ - ..-..+-.+|+++++..-+...++..-...+ . -+
T Consensus 141 ~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v 220 (455)
T 3t5v_B 141 FLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQI 220 (455)
T ss_dssp HHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceE
Confidence 4677888888887762211 0 1233456789999999998888865533322 1 24
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhh-CCCC
Q 024419 76 KGYFRKGCILEAMEQYDDALSAFQTALQY-NPQS 108 (268)
Q Consensus 76 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~-~p~~ 108 (268)
..++.+|..+...++|.+|.+.+..|+.. .|..
T Consensus 221 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 221 EYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred eeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 66889999999999999999999999998 7765
No 284
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=70.69 E-value=8.2 Score=25.73 Aligned_cols=16 Identities=13% Similarity=0.079 Sum_probs=7.3
Q ss_pred cCChHHHHHHHHHHHh
Q 024419 54 LVKLNKALADAETTIS 69 (268)
Q Consensus 54 ~~~~~~A~~~~~~al~ 69 (268)
.|+|++|+.+|..+++
T Consensus 31 ag~y~eAl~lY~~Aie 46 (117)
T 2cpt_A 31 AGNYEEALQLYQHAVQ 46 (117)
T ss_dssp HTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHH
Confidence 3444444444444443
No 285
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=70.16 E-value=46 Score=27.64 Aligned_cols=61 Identities=13% Similarity=0.085 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhh-----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHH
Q 024419 59 KALADAETTISL-----NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQY------NPQSAEVSRKIKRVS 119 (268)
Q Consensus 59 ~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~------~p~~~~~~~~l~~~~ 119 (268)
.++..|.+|+.. +..+...|..+|-.+.+.++|.+|+..+..+-.. ..++.++|..+..+.
T Consensus 282 ~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~YnY~reDeEiYke~~eIa 353 (489)
T 4gq4_A 282 DPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFFEVA 353 (489)
T ss_dssp CHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhhhhhhhhcccccchHHHHHHHHHHH
Confidence 356677777764 4456788999999999999999999999887543 456677776665553
No 286
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=70.15 E-value=8 Score=23.66 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=12.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q 024419 11 KDKGNEFFKAGNYLKAAALYTQAIK 35 (268)
Q Consensus 11 ~~~g~~~~~~~~~~~A~~~~~~al~ 35 (268)
..+|+-+...|+|+.|+.+|+.+++
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHH
Confidence 3444555555555555555555444
No 287
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=68.25 E-value=7.9 Score=24.55 Aligned_cols=32 Identities=25% Similarity=0.434 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 024419 57 LNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQ 103 (268)
Q Consensus 57 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~ 103 (268)
.+.|+....+|++. -..|+|++|+..|..+++
T Consensus 12 l~~Ai~lv~~Ave~---------------D~~g~y~eAl~~Y~~Aie 43 (93)
T 1wfd_A 12 STAAVAVLKRAVEL---------------DAESRYQQALVCYQEGID 43 (93)
T ss_dssp HHHHHHHHHHHHHH---------------HHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---------------HHhCCHHHHHHHHHHHHH
Confidence 34666666666554 355666666666555553
No 288
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=66.06 E-value=27 Score=32.58 Aligned_cols=71 Identities=10% Similarity=0.018 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-C--------------------CC--ChHHHHHHHHHHHHcCChHHHHH
Q 024419 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ-D--------------------PS--NPTLFSNRAAAFLHLVKLNKALA 62 (268)
Q Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~--------------------p~--~~~~~~~~a~~~~~~~~~~~A~~ 62 (268)
++-.-+.+|.++...|++++|..+|++|-.- . +. ....|.+...++.+.+-++.++.
T Consensus 839 t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~ 918 (950)
T 4gq2_M 839 DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALE 918 (950)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 3444588999999999999999999986421 0 01 12477888999999999999999
Q ss_pred HHHHHHhh-CCCCHH
Q 024419 63 DAETTISL-NPQWEK 76 (268)
Q Consensus 63 ~~~~al~~-~p~~~~ 76 (268)
..+.||.. .+++..
T Consensus 919 fA~lAI~~~~~dd~~ 933 (950)
T 4gq2_M 919 FSLLADASKETDDED 933 (950)
T ss_dssp HHHHHHHTCCSCCHH
T ss_pred HHHHHHhhcccCCcc
Confidence 99999975 445543
No 289
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=64.71 E-value=17 Score=32.22 Aligned_cols=54 Identities=6% Similarity=-0.028 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q 024419 74 WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKR 127 (268)
Q Consensus 74 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~ 127 (268)
-.+.....|......|+|.-|.+....++..+|+|..+...++.++..++.-.+
T Consensus 448 g~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~~ 501 (658)
T 2cfu_A 448 GAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQAE 501 (658)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 345666778888889999999999999999999999999999999988875544
No 290
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=64.62 E-value=62 Score=27.05 Aligned_cols=102 Identities=9% Similarity=-0.110 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhh-C-CCC----HHHHHHHHHHHHHHHHHHHhHHHHhhhhh-HHHhhhHHHHH
Q 024419 76 KGYFRKGCILEAMEQYDDALSAFQTALQY-N-PQS----AEVSRKIKRVSQLAKDKKRAQEVENIRSN-VDMVQHLDEFK 148 (268)
Q Consensus 76 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~-~-p~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~ 148 (268)
.....|+.++...|++.+|...+.....- . ..+ .+.+....+++...+++.+|..+...... ..........
T Consensus 138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~l- 216 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESL- 216 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHH-
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHH-
Confidence 45577899999999999999999887632 1 111 45677777788888888888665321110 0000000011
Q ss_pred HHhhhhcCchhhhHHHHHHHHHHHHHHHHhhhhhhh
Q 024419 149 SEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSK 184 (268)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 184 (268)
.+..+...+.++...++|.+|-.+|..+..
T Consensus 217 ------k~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 217 ------KLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp ------HHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 112223344455556777777777766543
No 291
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=63.34 E-value=9.6 Score=25.39 Aligned_cols=32 Identities=31% Similarity=0.451 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 024419 57 LNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQ 103 (268)
Q Consensus 57 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~ 103 (268)
.+.|+....+|+.. -..|+|++|+..|..+++
T Consensus 15 l~kAi~lv~~Ave~---------------D~ag~y~eAl~lY~~Aie 46 (117)
T 2cpt_A 15 LQKAIDLASKAAQE---------------DKAGNYEEALQLYQHAVQ 46 (117)
T ss_dssp HHHHHHHHHHHHHH---------------HHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---------------HHccCHHHHHHHHHHHHH
Confidence 34666666666544 345666666666666554
No 292
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=61.24 E-value=11 Score=23.07 Aligned_cols=25 Identities=12% Similarity=0.127 Sum_probs=14.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHh
Q 024419 45 SNRAAAFLHLVKLNKALADAETTIS 69 (268)
Q Consensus 45 ~~~a~~~~~~~~~~~A~~~~~~al~ 69 (268)
..+|+=|...|+|+.|+.+|+.+++
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHH
Confidence 3455555556666666666555543
No 293
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=61.01 E-value=17 Score=23.17 Aligned_cols=29 Identities=21% Similarity=0.263 Sum_probs=18.0
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 024419 79 FRKGCILEAMEQYDDALSAFQTALQYNPQ 107 (268)
Q Consensus 79 ~~la~~~~~~~~~~~A~~~~~~~l~~~p~ 107 (268)
..+|..+...|+++.|+.+|-+|+...|.
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 34566666666666666666666666554
No 294
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=61.93 E-value=2.2 Score=37.96 Aligned_cols=49 Identities=20% Similarity=0.163 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCC
Q 024419 8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVK 56 (268)
Q Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~ 56 (268)
+....+|...+..|+|..|.+..+.++..+|++..+...++.+|.++|.
T Consensus 462 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~ 510 (668)
T 2yhe_A 462 DAVLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGY 510 (668)
Confidence 4455666677777777777777777777777777777777777776664
No 295
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=56.80 E-value=30 Score=29.14 Aligned_cols=63 Identities=6% Similarity=-0.002 Sum_probs=49.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCC----------CChHHHHHHHHHHHHcCChHHHHHHHHHHHhh-CCCC
Q 024419 12 DKGNEFFKAGNYLKAAALYTQAIKQDP----------SNPTLFSNRAAAFLHLVKLNKALADAETTISL-NPQW 74 (268)
Q Consensus 12 ~~g~~~~~~~~~~~A~~~~~~al~~~p----------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~~ 74 (268)
.+-.+|++.++...|...++..-...+ .-+..++.+|..++..++|.+|.+++..|+.. .|..
T Consensus 181 ~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 181 KLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 345688899999988888866543322 12477888999999999999999999999998 7754
No 296
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=56.20 E-value=24 Score=21.93 Aligned_cols=13 Identities=15% Similarity=-0.090 Sum_probs=5.9
Q ss_pred HHcCChHHHHHHH
Q 024419 52 LHLVKLNKALADA 64 (268)
Q Consensus 52 ~~~~~~~~A~~~~ 64 (268)
-..|++++|+.+|
T Consensus 27 D~~g~y~eAl~lY 39 (86)
T 4a5x_A 27 DSESRYPQALVCY 39 (86)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHH
Confidence 3444444444443
No 297
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=55.96 E-value=52 Score=26.79 Aligned_cols=45 Identities=16% Similarity=0.132 Sum_probs=36.4
Q ss_pred HHHHHHHHHhc-----CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 024419 26 AAALYTQAIKQ-----DPSNPTLFSNRAAAFLHLVKLNKALADAETTISL 70 (268)
Q Consensus 26 A~~~~~~al~~-----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 70 (268)
++..|.+|+.. ...+...|..+|-++++.+++.+|+..+..+-..
T Consensus 276 ~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~V 325 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGYV 325 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHHH
Confidence 77778887764 3456778888999999999999999999877543
No 298
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=51.32 E-value=43 Score=21.12 Aligned_cols=28 Identities=11% Similarity=0.237 Sum_probs=17.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 024419 12 DKGNEFFKAGNYLKAAALYTQAIKQDPS 39 (268)
Q Consensus 12 ~~g~~~~~~~~~~~A~~~~~~al~~~p~ 39 (268)
..|..++..|+|=+|=+.++.+-...|.
T Consensus 6 ~~~~~lfn~g~~~eaHEvlE~~W~~~~~ 33 (94)
T 2cwy_A 6 EEVLGLWRAGRYYEVHEVLEPYWLKATG 33 (94)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCCC
Confidence 4555666667777776666666666543
No 299
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=48.64 E-value=47 Score=20.76 Aligned_cols=30 Identities=13% Similarity=0.173 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 024419 41 PTLFSNRAAAFLHLVKLNKALADAETTISL 70 (268)
Q Consensus 41 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 70 (268)
++....-|.-+++.++|.+|...|+++..+
T Consensus 53 ~r~~i~eak~~y~~~ny~ea~~l~~k~~n~ 82 (106)
T 2vkj_A 53 ARSLIAEGKDLFETANYGEALVFFEKALNL 82 (106)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHcc
Confidence 344555566677777777777777777654
No 300
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=48.45 E-value=37 Score=20.86 Aligned_cols=10 Identities=20% Similarity=0.302 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 024419 59 KALADAETTI 68 (268)
Q Consensus 59 ~A~~~~~~al 68 (268)
.|+....+|+
T Consensus 12 ~A~~l~~~Av 21 (85)
T 2v6x_A 12 KGIELVQKAI 21 (85)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 301
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=46.71 E-value=61 Score=27.10 Aligned_cols=26 Identities=23% Similarity=0.047 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHH
Q 024419 43 LFSNRAAAFLHLVKLNKALADAETTI 68 (268)
Q Consensus 43 ~~~~~a~~~~~~~~~~~A~~~~~~al 68 (268)
++..+|.+|+.+++|++|+...++++
T Consensus 192 a~allarvyL~~~~~~~A~~~a~~vi 217 (454)
T 3myv_A 192 ARALLARIYLYHDDNRKAFDLADQLI 217 (454)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 44445555555555555555555554
No 302
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.69 E-value=31 Score=22.82 Aligned_cols=36 Identities=11% Similarity=0.148 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhchhHHHHHhhhhhhhHhhhhH
Q 024419 165 FSFVVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAP 205 (268)
Q Consensus 165 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 205 (268)
+......+++|..+..+++.++.. |+...|++.|++
T Consensus 12 l~~ik~~h~~AF~~Is~AL~~DE~-----g~k~~Al~lYk~ 47 (116)
T 2dl1_A 12 IKIIREAYKKAFLFVNKGLNTDEL-----GQKEEAKNYYKQ 47 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-----TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhc-----CCHHHHHHHHHH
Confidence 345677888888899998888764 555555544433
No 303
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=45.03 E-value=23 Score=26.44 Aligned_cols=38 Identities=16% Similarity=0.032 Sum_probs=19.4
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 024419 50 AFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEA 87 (268)
Q Consensus 50 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 87 (268)
++.+.|.|++|.+.+++....+|.+......|..+-..
T Consensus 123 VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~ 160 (235)
T 3bu8_A 123 ICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIRE 160 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhc
Confidence 34455555555555555555554444444444444333
No 304
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=44.60 E-value=27 Score=22.71 Aligned_cols=24 Identities=13% Similarity=-0.233 Sum_probs=11.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHH
Q 024419 44 FSNRAAAFLHLVKLNKALADAETT 67 (268)
Q Consensus 44 ~~~~a~~~~~~~~~~~A~~~~~~a 67 (268)
...-|.-..+.|+|++|.+..+++
T Consensus 23 ~~~eAl~~Ak~g~fe~A~~~l~eA 46 (105)
T 2e2a_A 23 KLLEALKAAENGDFAKADSLVVEA 46 (105)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH
Confidence 333344444455555555544444
No 305
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=44.57 E-value=19 Score=26.43 Aligned_cols=32 Identities=16% Similarity=0.253 Sum_probs=13.5
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChHHHHHH
Q 024419 16 EFFKAGNYLKAAALYTQAIKQDPSNPTLFSNR 47 (268)
Q Consensus 16 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 47 (268)
+++.+|.+++|.+.+++....+|++......+
T Consensus 126 VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL 157 (211)
T 3bqo_A 126 VCMENGNFKEAEEVFERIFGDPNSHMPFKSKL 157 (211)
T ss_dssp HHHHTTCHHHHHHHHHHHC-----CCTTHHHH
T ss_pred HHHHccchHHHHHHHHHHhcCCCCchHHHHHH
Confidence 44555555555555555555544444433333
No 306
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=44.12 E-value=1.2e+02 Score=24.26 Aligned_cols=26 Identities=12% Similarity=0.167 Sum_probs=21.8
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHH
Q 024419 5 AEEMSLKDKGNEFFKAGNYLKAAALY 30 (268)
Q Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~ 30 (268)
.+++-+..+|..++..+++.+|..+|
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 45677788899999999999998887
No 307
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=43.98 E-value=28 Score=22.54 Aligned_cols=29 Identities=24% Similarity=0.266 Sum_probs=14.6
Q ss_pred HhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 024419 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQA 33 (268)
Q Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a 33 (268)
.+++.....|....+.|+|++|.+.++++
T Consensus 16 G~Ars~~~eAl~~Ak~g~fe~A~~~l~eA 44 (103)
T 1wcr_A 16 GQARSLAYAALKQAKQGDFAAAKAMMDQS 44 (103)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34444455555555555555555554444
No 308
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=43.12 E-value=66 Score=26.95 Aligned_cols=28 Identities=14% Similarity=0.189 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 024419 76 KGYFRKGCILEAMEQYDDALSAFQTALQ 103 (268)
Q Consensus 76 ~~~~~la~~~~~~~~~~~A~~~~~~~l~ 103 (268)
.++..+|.+|..+|+|++|....++++.
T Consensus 197 aa~allArvyL~~~~~~~A~~~a~~vi~ 224 (461)
T 3kez_A 197 AAMTLLSRVYLYKGEYNEALTMAENAIK 224 (461)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 3444455555555555555555555543
No 309
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=42.67 E-value=74 Score=26.98 Aligned_cols=29 Identities=14% Similarity=0.086 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 024419 42 TLFSNRAAAFLHLVKLNKALADAETTISL 70 (268)
Q Consensus 42 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 70 (268)
.++..+|.+|+-+++|++|+...++++..
T Consensus 204 aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 204 VVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 45555666666666666666666666653
No 310
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.65 E-value=52 Score=21.76 Aligned_cols=18 Identities=22% Similarity=0.333 Sum_probs=14.0
Q ss_pred CCHHHHHHHHHHHHhcCC
Q 024419 21 GNYLKAAALYTQAIKQDP 38 (268)
Q Consensus 21 ~~~~~A~~~~~~al~~~p 38 (268)
..+++|..+..++|++|.
T Consensus 17 ~~h~~AF~~Is~AL~~DE 34 (116)
T 2dl1_A 17 EAYKKAFLFVNKGLNTDE 34 (116)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhh
Confidence 457888888888888765
No 311
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=41.71 E-value=1.3e+02 Score=23.82 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q 024419 9 SLKDKGNEFFKAGNYLKAAALYTQA 33 (268)
Q Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~a 33 (268)
.+..+..-+..+++|++|++.+...
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g 59 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG 59 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3455666667777777777775443
No 312
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=40.99 E-value=74 Score=26.75 Aligned_cols=28 Identities=18% Similarity=0.197 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 024419 42 TLFSNRAAAFLHLVKLNKALADAETTIS 69 (268)
Q Consensus 42 ~~~~~~a~~~~~~~~~~~A~~~~~~al~ 69 (268)
.++..+|.+|+-+++|++|+...++++.
T Consensus 203 aa~allarvyL~~~~~~~A~~~a~~vi~ 230 (477)
T 3mcx_A 203 AAQALLSRVYLNMGEYQKAYDAATDVIK 230 (477)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 3455555555555556555555555554
No 313
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=40.73 E-value=1.2e+02 Score=25.28 Aligned_cols=45 Identities=16% Similarity=0.117 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhc-----CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 024419 25 KAAALYTQAIKQ-----DPSNPTLFSNRAAAFLHLVKLNKALADAETTIS 69 (268)
Q Consensus 25 ~A~~~~~~al~~-----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 69 (268)
.++..|++|+.. ...+...|..+|-++.+.+++.+|+..+..+-.
T Consensus 282 ~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~ 331 (489)
T 4gq4_A 282 DPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTAT 331 (489)
T ss_dssp CHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhhhh
Confidence 367778887764 445677888889999999999999999988854
No 314
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=40.29 E-value=97 Score=21.98 Aligned_cols=49 Identities=10% Similarity=0.078 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 024419 59 KALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQ 107 (268)
Q Consensus 59 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~ 107 (268)
.|...+.++...+|......-.+..++....+....+..|...+..||.
T Consensus 74 ~a~~~L~~l~~~d~~l~~~~e~l~~a~~~l~d~~~~L~~y~~~le~DP~ 122 (175)
T 4abx_A 74 EAVRALNAGAKYDETVMQLQNELRAALESVQAIAGELRDVAEGSAADPE 122 (175)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHH
T ss_pred HHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 3444555555566665566666777777777666666666666666663
No 315
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=39.73 E-value=73 Score=26.52 Aligned_cols=44 Identities=16% Similarity=0.116 Sum_probs=34.9
Q ss_pred HHHHHHHHHhc-----CCCChHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 024419 26 AAALYTQAIKQ-----DPSNPTLFSNRAAAFLHLVKLNKALADAETTIS 69 (268)
Q Consensus 26 A~~~~~~al~~-----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 69 (268)
++..|.+|+.. ...+...|..+|-++++.+++.+|+..+..+-.
T Consensus 298 ~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~ 346 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTAT 346 (550)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHH
Confidence 67777777654 345667788899999999999999999877754
No 316
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=39.17 E-value=36 Score=22.26 Aligned_cols=28 Identities=21% Similarity=0.239 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 024419 6 EEMSLKDKGNEFFKAGNYLKAAALYTQA 33 (268)
Q Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a 33 (268)
+++.....|....+.|+|++|.+.++++
T Consensus 21 ~Ars~~~eAl~~Ak~gdfe~A~~~l~eA 48 (109)
T 3k1s_A 21 NARSFAMEALQFAKQGKMAEADEAMVKA 48 (109)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444444455555555555555554444
No 317
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=39.13 E-value=1.1e+02 Score=22.42 Aligned_cols=53 Identities=8% Similarity=0.029 Sum_probs=43.3
Q ss_pred cCCHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 024419 20 AGNYLKAAALYTQAIKQD--PSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72 (268)
Q Consensus 20 ~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p 72 (268)
.++..++.+.|....... -..+..|..-|..+...|++.+|.+.|+..++.+-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A 146 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNC 146 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 344678888888877654 45577888889999999999999999999999764
No 318
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=37.64 E-value=1.1e+02 Score=25.62 Aligned_cols=47 Identities=9% Similarity=0.014 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHhhCCC--------CHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 024419 57 LNKALADAETTISLNPQ--------WEKGYFRKGCILEAMEQYDDALSAFQTALQ 103 (268)
Q Consensus 57 ~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~~~~~~A~~~~~~~l~ 103 (268)
++..++.++.|+..-|. ...++..+|.+|..+++|++|++..++++.
T Consensus 164 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~ 218 (454)
T 3myv_A 164 YDFIIETLEEAVTLMSEEKNNGRMNKYAARALLARIYLYHDDNRKAFDLADQLIK 218 (454)
T ss_dssp HHHHHHHHHHHHHHCCCSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccCCeecHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 35667777777776443 245788899999999999999999999885
No 319
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=36.92 E-value=1.1e+02 Score=26.00 Aligned_cols=48 Identities=17% Similarity=0.088 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhhCCC-----------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 024419 58 NKALADAETTISLNPQ-----------WEKGYFRKGCILEAMEQYDDALSAFQTALQYN 105 (268)
Q Consensus 58 ~~A~~~~~~al~~~p~-----------~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~ 105 (268)
+..++.++.|+..-|. ..-++..+|.+|..+++|++|+...++++...
T Consensus 175 ~~I~~DL~~A~~~Lp~~~~~~~~gr~tk~aA~allArvyL~~~~~~~A~~~a~~vi~~~ 233 (495)
T 3lew_A 175 AQSINDLEEALELIPETYVRDAKHKIDNEVVLGILSRACLYARQWEKAKTYSDKLLAKD 233 (495)
T ss_dssp HHHHHHHHHHHHHSCTTCCCSSTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcccccCcccCCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 4556677777765443 13578889999999999999999999998653
No 320
>3l8r_A PTCA, putative PTS system, cellobiose-specific IIA component; helix; 2.50A {Streptococcus mutans} SCOP: a.7.2.0
Probab=36.73 E-value=41 Score=22.44 Aligned_cols=29 Identities=10% Similarity=-0.068 Sum_probs=17.8
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 024419 40 NPTLFSNRAAAFLHLVKLNKALADAETTI 68 (268)
Q Consensus 40 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al 68 (268)
+++..+.-|.-..+.|+|++|.+.++++-
T Consensus 36 ~ARS~~~eAl~~Ak~gdfe~A~~~l~eA~ 64 (120)
T 3l8r_A 36 NARSIVHEAFDAMREKNYILAEQKLQEAN 64 (120)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44455555555666677777776666664
No 321
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=34.67 E-value=1.8e+02 Score=23.35 Aligned_cols=25 Identities=16% Similarity=0.276 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q 024419 9 SLKDKGNEFFKAGNYLKAAALYTQA 33 (268)
Q Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~a 33 (268)
.+..++.-+.++++|++|++.+-..
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G 61 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV 61 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 4566777888899999999866553
No 322
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=34.62 E-value=1.2e+02 Score=25.47 Aligned_cols=23 Identities=13% Similarity=0.045 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHH
Q 024419 109 AEVSRKIKRVSQLAKDKKRAQEV 131 (268)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~~a~~~ 131 (268)
..++..+++++...+++++|...
T Consensus 196 ~aa~allArvyL~~~~~~~A~~~ 218 (461)
T 3kez_A 196 WAAMTLLSRVYLYKGEYNEALTM 218 (461)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHH
Confidence 55777788888888888877654
No 323
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=34.53 E-value=1.9e+02 Score=23.62 Aligned_cols=88 Identities=10% Similarity=-0.036 Sum_probs=61.7
Q ss_pred HHHHcCCHHHHHHHHHHHHhcC-------C----------CChHHHHHHHHHHHHcCChHHHHHHHHHHHhh-------C
Q 024419 16 EFFKAGNYLKAAALYTQAIKQD-------P----------SNPTLFSNRAAAFLHLVKLNKALADAETTISL-------N 71 (268)
Q Consensus 16 ~~~~~~~~~~A~~~~~~al~~~-------p----------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-------~ 71 (268)
+.....+.++|++.+++....- + ....+...++..|...|+.++|....+++-.. +
T Consensus 85 ~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~ 164 (393)
T 4b4t_O 85 SLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIP 164 (393)
T ss_dssp HHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCcc
Confidence 4456779999999998764321 0 11345667888999999999999999888643 2
Q ss_pred CC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 024419 72 PQ-WEKGYFRKGCILEAMEQYDDALSAFQTALQ 103 (268)
Q Consensus 72 p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~l~ 103 (268)
|. +...|...+..+...+++..+....-.++.
T Consensus 165 ~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~ 197 (393)
T 4b4t_O 165 LRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLS 197 (393)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 21 234455567777888999888777666664
No 324
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=33.54 E-value=1.2e+02 Score=21.27 Aligned_cols=61 Identities=16% Similarity=0.074 Sum_probs=45.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------HHHHHH-HH--HHHHHccCHHHHHHHHHHHHhh
Q 024419 44 FSNRAAAFLHLVKLNKALADAETTISLNPQW------EKGYFR-KG--CILEAMEQYDDALSAFQTALQY 104 (268)
Q Consensus 44 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~-la--~~~~~~~~~~~A~~~~~~~l~~ 104 (268)
-+..|..++..|+|=+|-+.++.+-...+.. ...+++ +| ..+...|+..-|...+.+++..
T Consensus 35 ~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 35 AVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3556777888899999999999998876654 334444 43 3455679999999999999763
No 325
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=33.32 E-value=1.5e+02 Score=22.15 Aligned_cols=47 Identities=9% Similarity=-0.007 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhh--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 024419 59 KALADAETTISL--NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYN 105 (268)
Q Consensus 59 ~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~ 105 (268)
.+...|...... --..+..|...|..+...|++.+|.+.|+.+++..
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 455566555543 33456777778888888888888888888888764
No 326
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=32.43 E-value=99 Score=20.00 Aligned_cols=72 Identities=11% Similarity=-0.058 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 024419 21 GNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAF 98 (268)
Q Consensus 21 ~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 98 (268)
...++|..+-+= +...+...-+-.-+..-++..|+|++|....+.. + .++.--.+|.|-.+.|-.+++..-+
T Consensus 20 H~HqEA~tIAdw-L~~~~~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c-~pdlepw~ALce~rlGl~s~le~rL 91 (115)
T 2uwj_G 20 HCHEEALCIAEW-LERLGQDEAARLIRISSLANQGRYQEALAFAHGN----P-WPALEPWFALCEWHLGLGAALDRRL 91 (115)
T ss_dssp TCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHTTCHHHHHGGGTTC----C-CGGGHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHH-HHhCCcHHHHHHHHHHHHHcchhHHHHHHhcCCC----C-CchHHHHHHHHHHhcccHHHHHHHH
Confidence 345665554433 3334443333444555677788888887654322 1 4555555677778888877776555
No 327
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=32.01 E-value=1e+02 Score=19.92 Aligned_cols=72 Identities=7% Similarity=-0.082 Sum_probs=42.5
Q ss_pred CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 024419 21 GNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAF 98 (268)
Q Consensus 21 ~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 98 (268)
...++|..+-+= +...+...-+-.-+..-++..|+|++|....+.. + .++.--.+|.|-.+.|-.+++..-+
T Consensus 21 H~HqEA~tIAdw-L~~~~~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c-~pdlepw~ALce~rlGl~s~le~rL 92 (116)
T 2p58_C 21 HYHEEANCIAEW-LHLKGEEEAVQLIRLSSLMNRGDYASALQQGNKL----A-YPDLEPWLALCEYRLGLGSALESRL 92 (116)
T ss_dssp TCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTS----C-CGGGHHHHHHHHHHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHH-HHhCCcHHHHHHHHHHHHHcchhHHHHHHhcCCC----C-CchHHHHHHHHHHhcccHHHHHHHH
Confidence 355666555443 3334443334444555677888888888765432 2 4555555677778888877776544
No 328
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=31.49 E-value=1.3e+02 Score=25.30 Aligned_cols=48 Identities=15% Similarity=0.143 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHhhCCC--------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 024419 57 LNKALADAETTISLNPQ--------WEKGYFRKGCILEAMEQYDDALSAFQTALQY 104 (268)
Q Consensus 57 ~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 104 (268)
++..++.++.|+..-|. -..++..+|.+|...++|++|++..++++..
T Consensus 176 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 176 YEQVVSDMSNALSGLRQETSNGYINYWAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp HHHHHHHHHHHGGGSCSSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccCCcCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 45667777778776543 2467888999999999999999999999864
No 329
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=30.27 E-value=2.1e+02 Score=22.82 Aligned_cols=29 Identities=17% Similarity=0.163 Sum_probs=23.8
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 024419 78 YFRKGCILEAMEQYDDALSAFQTALQYNP 106 (268)
Q Consensus 78 ~~~la~~~~~~~~~~~A~~~~~~~l~~~p 106 (268)
....|.-+...|++++|+..|+.+|..-|
T Consensus 117 ~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~ 145 (325)
T 3mv2_A 117 KMNEGYKNFKLNKPDIAIECFREAIYRIT 145 (325)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence 45567778889999999999999987643
No 330
>3dza_A Uncharacterized putative membrane protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=29.57 E-value=1.6e+02 Score=21.36 Aligned_cols=64 Identities=17% Similarity=0.029 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------cCC-CChHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 024419 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIK-------QDP-SNPTLFSNRAAAFLHLVKLNKALADAETTIS 69 (268)
Q Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~-------~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 69 (268)
.-...+..++..++.|+...|.+.++-+=. .-| ....-....+..+...|+|.+|-..++.+..
T Consensus 107 eK~aAI~~AN~~Lk~Gd~~~A~~~LklAgvdv~~~~allPL~qT~~~V~~A~~ll~~gk~yeAn~aLk~Aed 178 (191)
T 3dza_A 107 EKESAIQSANEKLAKGDQKGAIDTLRLAGIGVIENQYLMPLNQTRKAVAQSQELLKAGKYYEANLVLKGAEE 178 (191)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCEEEEEEEEEEHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHcCCchhhhhhhCChHhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 356778889999999999999988765411 112 1245667788888888888888888877754
No 331
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=28.63 E-value=95 Score=21.40 Aligned_cols=27 Identities=11% Similarity=0.028 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHh
Q 024419 43 LFSNRAAAFLHLVKLNKALADAETTIS 69 (268)
Q Consensus 43 ~~~~~a~~~~~~~~~~~A~~~~~~al~ 69 (268)
-++..|.+|...|+.+.|.-.|-+.+.
T Consensus 42 ~llr~A~~y~~egd~e~AYily~R~~~ 68 (146)
T 2xze_A 42 EIIRMASIYSEEGNIEHAFILYNKYIT 68 (146)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345567777777888877777776543
No 332
>2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.32A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.8.11.1
Probab=28.10 E-value=1.1e+02 Score=18.99 Aligned_cols=25 Identities=4% Similarity=0.016 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHH
Q 024419 43 LFSNRAAAFLHLVKLNKALADAETT 67 (268)
Q Consensus 43 ~~~~~a~~~~~~~~~~~A~~~~~~a 67 (268)
.|+.=|.-++..|++..|+.++.=+
T Consensus 41 ~Y~~Da~~fl~kGD~v~Ala~isYa 65 (87)
T 2pmr_A 41 NYRDDSVYYLEKGDHITSFGCITYA 65 (87)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444556666666666666655433
No 333
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=27.54 E-value=1.7e+02 Score=24.87 Aligned_cols=28 Identities=14% Similarity=0.235 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 024419 76 KGYFRKGCILEAMEQYDDALSAFQTALQ 103 (268)
Q Consensus 76 ~~~~~la~~~~~~~~~~~A~~~~~~~l~ 103 (268)
.++..+|.++...+++++|....++++.
T Consensus 183 aA~allarv~L~~~~~~~A~~~a~~vi~ 210 (517)
T 3qnk_A 183 AAYALKSRVELYDKRYEDVIKSCAEVYK 210 (517)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555553
No 334
>2oo2_A Hypothetical protein AF_1782; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: a.8.11.1
Probab=27.38 E-value=1.1e+02 Score=18.89 Aligned_cols=24 Identities=13% Similarity=0.195 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHH
Q 024419 7 EMSLKDKGNEFFKAGNYLKAAALY 30 (268)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~ 30 (268)
+..++.-|..++..|++..|+.++
T Consensus 35 A~~Y~~Da~~fl~kGD~v~Ala~i 58 (86)
T 2oo2_A 35 IEAYISDSRYFLEKGDLVRAFECV 58 (86)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 444555555555555555555554
No 335
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=27.21 E-value=53 Score=20.57 Aligned_cols=18 Identities=17% Similarity=0.002 Sum_probs=12.4
Q ss_pred CCHHHHHHHHHHHHhcCC
Q 024419 21 GNYLKAAALYTQAIKQDP 38 (268)
Q Consensus 21 ~~~~~A~~~~~~al~~~p 38 (268)
..+++|..+.+++|..|.
T Consensus 11 ~~h~~AF~~Is~aL~~DE 28 (89)
T 3eab_A 11 VFHKQAFEYISIALRIDE 28 (89)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 346777777777777653
No 336
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=27.18 E-value=1.7e+02 Score=24.60 Aligned_cols=29 Identities=14% Similarity=-0.040 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 024419 42 TLFSNRAAAFLHLVKLNKALADAETTISL 70 (268)
Q Consensus 42 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 70 (268)
.++..+|.+|+-+++|++|+...++++..
T Consensus 198 aA~allarvyL~~~~~~~A~~~a~~vi~~ 226 (478)
T 3hdx_A 198 SAYSVLAHICAWQGNYAEAETYSAFIIDH 226 (478)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhC
Confidence 46777888888899999999999888864
No 337
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=26.21 E-value=1.1e+02 Score=22.97 Aligned_cols=27 Identities=15% Similarity=0.016 Sum_probs=12.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhh
Q 024419 44 FSNRAAAFLHLVKLNKALADAETTISL 70 (268)
Q Consensus 44 ~~~~a~~~~~~~~~~~A~~~~~~al~~ 70 (268)
|...|..+...|++.+|...|+..++.
T Consensus 153 Ye~wA~~lE~~g~~~~A~~Vy~~Gi~~ 179 (223)
T 4aez_C 153 YEEYANYFESRGLFQKADEVYQKGKRM 179 (223)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 333444444445555555555554443
No 338
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=26.19 E-value=44 Score=24.53 Aligned_cols=38 Identities=8% Similarity=0.084 Sum_probs=22.2
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024419 81 KGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRV 118 (268)
Q Consensus 81 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 118 (268)
.-.+....|.|++|.+.+++....+|++...-..|..+
T Consensus 123 AV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~I 160 (211)
T 3bqo_A 123 AIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMI 160 (211)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHH
T ss_pred HHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 34567777888888888888877776665555544444
No 339
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=31.83 E-value=14 Score=32.83 Aligned_cols=51 Identities=8% Similarity=-0.002 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHH
Q 024419 43 LFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDD 93 (268)
Q Consensus 43 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 93 (268)
.....|...+..|+|.-|.+....++..+|+|..+...++.+|.++|.-.+
T Consensus 463 ~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~~ 513 (668)
T 2yhe_A 463 AVLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQTE 513 (668)
Confidence 344456666667777777777777777777777777777777777765443
No 340
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=25.71 E-value=2.1e+02 Score=21.37 Aligned_cols=40 Identities=8% Similarity=0.194 Sum_probs=31.8
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 024419 82 GCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL 121 (268)
Q Consensus 82 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 121 (268)
-.+....|.|++|.+.+++.+..+|++...-..|..+-..
T Consensus 121 V~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~ 160 (235)
T 3bu8_A 121 VIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIRE 160 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhc
Confidence 3456789999999999999999888877777766666443
No 341
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=24.11 E-value=1.4e+02 Score=25.08 Aligned_cols=28 Identities=21% Similarity=0.109 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 024419 42 TLFSNRAAAFLHLVKLNKALADAETTIS 69 (268)
Q Consensus 42 ~~~~~~a~~~~~~~~~~~A~~~~~~al~ 69 (268)
.++..+|.+|+.+++|++|+...++++.
T Consensus 192 aA~aLlARvyL~~~~~~~A~~~a~~vi~ 219 (460)
T 3snx_A 192 VVNGLMARAYLLTGQWGEAAKAAEAARK 219 (460)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 3455556666666666666666665554
No 342
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=22.45 E-value=2.7e+02 Score=21.39 Aligned_cols=46 Identities=4% Similarity=-0.217 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhC--CC-CHHHHHHHHHHHHH
Q 024419 42 TLFSNRAAAFLHLVKLNKALADAETTISLN--PQ-WEKGYFRKGCILEA 87 (268)
Q Consensus 42 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~-~~~~~~~la~~~~~ 87 (268)
.-+..++.+..+.++|++.+.+.++++..+ |. ..+=...+..+|..
T Consensus 9 e~~v~~AkLaeqaeRyddm~~~mk~v~~~~~~~eLt~EERnLLSvaYKN 57 (260)
T 1o9d_A 9 EENVYMAKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAYKN 57 (260)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHH
Confidence 344556677777777777777777777766 44 23444444555443
No 343
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=22.40 E-value=1.9e+02 Score=24.16 Aligned_cols=47 Identities=11% Similarity=-0.066 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhhCC-------------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 024419 58 NKALADAETTISLNP-------------QWEKGYFRKGCILEAMEQYDDALSAFQTALQY 104 (268)
Q Consensus 58 ~~A~~~~~~al~~~p-------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 104 (268)
+..++.++.|+..-| ...-++-.+|.+|..++++++|....++++..
T Consensus 161 ~~I~~DL~~A~~~L~~~~~~~~~~~gr~tk~aA~aLlARvyL~~~~~~~A~~~a~~vi~~ 220 (460)
T 3snx_A 161 QQIFDDLNLAQDYLTNYVRKGDGQKFKPNTDVVNGLMARAYLLTGQWGEAAKAAEAARKG 220 (460)
T ss_dssp HHHHHHHHHHHHHTTTCCCCSGGGTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhcccccCCccccCcccCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 456666777665422 12357888999999999999999999999864
No 344
>2g0u_A Type III secretion system needle protein; helix-turn-helix, unknown function; NMR {Burkholderia pseudomallei} SCOP: a.2.20.1
Probab=22.22 E-value=1.5e+02 Score=18.57 Aligned_cols=28 Identities=18% Similarity=0.234 Sum_probs=18.3
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024419 90 QYDDALSAFQTALQYNPQSAEVSRKIKR 117 (268)
Q Consensus 90 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 117 (268)
...+++..-.+.++.+|+||..+-.+..
T Consensus 31 ~~~~~l~~Al~~L~~~psNPa~LAe~Qa 58 (92)
T 2g0u_A 31 DLNKQLQDAQANLTKNPSDPTALANYQM 58 (92)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 3445566666667789999887654433
No 345
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=22.18 E-value=2.3e+02 Score=23.76 Aligned_cols=48 Identities=21% Similarity=0.052 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHhhCCC-----------------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 024419 57 LNKALADAETTISLNPQ-----------------------WEKGYFRKGCILEAMEQYDDALSAFQTALQY 104 (268)
Q Consensus 57 ~~~A~~~~~~al~~~p~-----------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 104 (268)
++..++.++.|+..-|. ..-++..+|.+|...|++++|....++++..
T Consensus 156 y~~I~~DL~~A~~~Lp~~~~~~~~~~~~~~~~~~~~~r~tk~aA~allarvyL~~~~~~~A~~~a~~vi~~ 226 (478)
T 3hdx_A 156 LSYAKAELLTAIEDLPYQYGTQTNLYYGSYGAQWQGKLFNKLSAYSVLAHICAWQGNYAEAETYSAFIIDH 226 (478)
T ss_dssp HHHHHHHHHHHHHHCCSSCCCSSSCBTTBCGGGGTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccCCccccccccccccccccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhC
Confidence 34667777777765332 1347788999999999999999999999854
No 346
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=22.14 E-value=3.7e+02 Score=23.88 Aligned_cols=30 Identities=23% Similarity=0.275 Sum_probs=19.8
Q ss_pred HHHHHHHH--HHccCHHHHHHHHHHHHhhCCCC
Q 024419 78 YFRKGCIL--EAMEQYDDALSAFQTALQYNPQS 108 (268)
Q Consensus 78 ~~~la~~~--~~~~~~~~A~~~~~~~l~~~p~~ 108 (268)
+..+..++ +..|+++.|++.+++ +.+-|.+
T Consensus 539 Ll~l~~f~~~~~~g~~~~AL~~i~~-L~llPl~ 570 (661)
T 2qx5_A 539 LLNISSIRELYFNKQWQETLSQMEL-LDLLPFS 570 (661)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-TSCSCC-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHh-CCCCCCC
Confidence 34444444 667888888888887 5677755
No 347
>3jq1_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 1.55A {Bacteroides vulgatus atcc 8482}
Probab=22.08 E-value=1.4e+02 Score=25.21 Aligned_cols=27 Identities=7% Similarity=0.089 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHH
Q 024419 42 TLFSNRAAAFLHLVKLNKALADAETTI 68 (268)
Q Consensus 42 ~~~~~~a~~~~~~~~~~~A~~~~~~al 68 (268)
.++..+|.+|+.+++|++|+...++++
T Consensus 181 aA~allarvyL~~~~~~~A~~~a~~vi 207 (481)
T 3jq1_A 181 AAYAALGKIYVYEENWQEAINVLEPLT 207 (481)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 345555566666666666666555554
No 348
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=21.73 E-value=3.1e+02 Score=21.86 Aligned_cols=102 Identities=14% Similarity=0.037 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC----CC----hHH--HHHHHHHHHH----------c--CChHHHHHH-
Q 024419 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDP----SN----PTL--FSNRAAAFLH----------L--VKLNKALAD- 63 (268)
Q Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p----~~----~~~--~~~~a~~~~~----------~--~~~~~A~~~- 63 (268)
...-...|..++..|++++|+..|+.+|..-| ++ .++ +..++.-|.- + .+....++.
T Consensus 114 L~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~~kR~lELA 193 (325)
T 3mv2_A 114 VNEKMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRMLELA 193 (325)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence 44457789999999999999999999987633 11 111 2222221210 0 111111111
Q ss_pred -HHHHHhhCCCCHHHHHHHH-HHHHHccCHHHHHHHHHHHHhhCCCC
Q 024419 64 -AETTISLNPQWEKGYFRKG-CILEAMEQYDDALSAFQTALQYNPQS 108 (268)
Q Consensus 64 -~~~al~~~p~~~~~~~~la-~~~~~~~~~~~A~~~~~~~l~~~p~~ 108 (268)
|-...++.|.+...-.+.| ...++.++|..|....++.|++.|..
T Consensus 194 AYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~ 240 (325)
T 3mv2_A 194 AYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSG 240 (325)
T ss_dssp HHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSS
T ss_pred HHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCH
Confidence 0111122333322223333 34667899999999999999999963
No 349
>3s6n_M SurviVal motor neuron protein; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2leh_B
Probab=20.87 E-value=82 Score=15.73 Aligned_cols=14 Identities=21% Similarity=0.278 Sum_probs=8.9
Q ss_pred hHHHHHHHHHHHhh
Q 024419 57 LNKALADAETTISL 70 (268)
Q Consensus 57 ~~~A~~~~~~al~~ 70 (268)
|++|+..|+.+++.
T Consensus 18 yDKAVaSfk~alk~ 31 (37)
T 3s6n_M 18 YDKAVASFKHALKN 31 (37)
T ss_pred HHHHHHHHHHHHhc
Confidence 56666666666654
No 350
>2a9u_A Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL, protease, SH3-binding, thiol protease, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: a.118.23.1
Probab=20.79 E-value=1.9e+02 Score=19.90 Aligned_cols=25 Identities=8% Similarity=-0.168 Sum_probs=14.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHH
Q 024419 44 FSNRAAAFLHLVKLNKALADAETTI 68 (268)
Q Consensus 44 ~~~~a~~~~~~~~~~~A~~~~~~al 68 (268)
++..|..|...|+.+.|--.|-+.+
T Consensus 45 L~r~A~~y~~EGd~E~AYilymRy~ 69 (144)
T 2a9u_A 45 IFKTAEECRLDRDEERAYVLYMKYV 69 (144)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445556666666666655555543
Done!