Query 024420
Match_columns 268
No_of_seqs 143 out of 1181
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 04:28:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024420.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024420hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02885 nicotinate phosphorib 100.0 3.1E-71 6.8E-76 548.8 25.4 254 1-268 292-545 (545)
2 PRK09243 nicotinate phosphorib 100.0 2.4E-56 5.2E-61 436.5 19.3 222 2-250 239-464 (464)
3 TIGR01513 NAPRTase_put putativ 100.0 3.8E-55 8.3E-60 425.9 20.6 214 2-250 230-443 (443)
4 PRK12484 nicotinate phosphorib 100.0 9.6E-54 2.1E-58 416.2 22.2 208 4-260 234-441 (443)
5 PHA02594 nadV nicotinamide pho 100.0 5.3E-34 1.1E-38 278.9 17.8 177 3-225 275-469 (470)
6 PRK09198 putative nicotinate p 100.0 4.6E-34 1E-38 279.2 17.4 173 4-225 270-462 (463)
7 KOG2511 Nicotinic acid phospho 100.0 1.6E-34 3.4E-39 270.9 7.3 168 1-188 251-418 (420)
8 COG1488 PncB Nicotinic acid ph 100.0 5.2E-32 1.1E-36 261.5 11.2 159 2-223 246-405 (405)
9 cd01401 PncB_like Nicotinate p 100.0 3E-30 6.4E-35 247.3 12.8 112 4-124 258-377 (377)
10 PRK05321 nicotinate phosphorib 100.0 3E-29 6.5E-34 241.9 13.1 119 4-131 261-384 (400)
11 TIGR01514 NAPRTase nicotinate 100.0 5E-29 1.1E-33 239.9 12.9 112 4-124 261-377 (394)
12 PF04095 NAPRTase: Nicotinate 100.0 4.4E-29 9.5E-34 226.4 7.5 131 2-136 94-242 (245)
13 cd01569 PBEF_like pre-B-cell c 99.9 3.3E-26 7.2E-31 220.8 13.2 123 4-127 268-407 (407)
14 cd01570 NAPRTase_A Nicotinate 99.9 5.8E-26 1.3E-30 213.9 11.2 98 2-106 230-327 (327)
15 PRK07188 nicotinate phosphorib 99.9 4.6E-23 1E-27 196.3 12.9 102 3-118 214-337 (352)
16 cd01567 NAPRTase_PncB Nicotina 99.8 2.1E-20 4.6E-25 176.3 10.7 93 4-104 247-343 (343)
17 PRK08662 nicotinate phosphorib 99.7 2.3E-17 5E-22 156.8 12.3 113 4-132 213-330 (343)
18 cd01571 NAPRTase_B Nicotinate 99.6 2.1E-15 4.5E-20 141.1 12.8 99 4-117 197-300 (302)
19 cd00516 PRTase_typeII Phosphor 99.2 3.8E-11 8.3E-16 109.8 8.9 83 5-104 194-281 (281)
20 PF01729 QRPTase_C: Quinolinat 97.8 4.8E-05 1E-09 66.2 5.8 70 21-104 100-169 (169)
21 PRK08385 nicotinate-nucleotide 96.8 0.011 2.3E-07 55.5 10.0 74 21-107 202-276 (278)
22 PRK05848 nicotinate-nucleotide 96.7 0.0087 1.9E-07 56.0 8.9 70 22-105 203-272 (273)
23 PRK07896 nicotinate-nucleotide 96.1 0.024 5.3E-07 53.5 8.1 72 19-104 217-288 (289)
24 cd01573 modD_like ModD; Quinol 95.5 0.08 1.7E-06 49.3 9.0 68 23-105 205-272 (272)
25 PRK07428 nicotinate-nucleotide 94.9 0.2 4.3E-06 47.3 9.7 73 20-106 215-287 (288)
26 PRK09016 quinolinate phosphori 94.5 0.21 4.6E-06 47.4 8.8 67 22-105 229-295 (296)
27 PRK06106 nicotinate-nucleotide 94.0 0.27 5.8E-06 46.4 8.3 69 20-105 213-281 (281)
28 PRK05742 nicotinate-nucleotide 93.8 0.45 9.7E-06 44.7 9.4 46 56-106 232-277 (277)
29 TIGR00078 nadC nicotinate-nucl 92.7 0.49 1.1E-05 44.0 7.7 43 58-105 223-265 (265)
30 cd00452 KDPG_aldolase KDPG and 91.7 0.65 1.4E-05 40.4 6.9 74 4-92 103-176 (190)
31 cd01568 QPRTase_NadC Quinolina 91.2 0.91 2E-05 42.1 7.7 67 22-103 202-268 (269)
32 PRK06552 keto-hydroxyglutarate 90.6 0.97 2.1E-05 40.7 7.1 73 4-92 115-188 (213)
33 TIGR00640 acid_CoA_mut_C methy 90.6 1.6 3.5E-05 36.4 8.0 68 17-92 51-118 (132)
34 cd01572 QPRTase Quinolinate ph 87.7 2.5 5.4E-05 39.3 7.8 43 57-104 226-268 (268)
35 PRK06978 nicotinate-nucleotide 87.5 3.2 7E-05 39.5 8.5 69 22-107 226-294 (294)
36 cd02071 MM_CoA_mut_B12_BD meth 87.4 4.3 9.3E-05 32.8 8.2 66 19-92 50-115 (122)
37 PRK06096 molybdenum transport 86.6 5.8 0.00012 37.5 9.7 72 22-108 210-281 (284)
38 PRK05096 guanosine 5'-monophos 86.4 1.8 4E-05 42.0 6.3 129 9-152 110-251 (346)
39 PRK07114 keto-hydroxyglutarate 86.3 1.8 3.8E-05 39.5 5.9 61 17-92 130-193 (222)
40 PRK07455 keto-hydroxyglutarate 86.1 2.8 6.1E-05 36.8 6.9 71 8-92 115-185 (187)
41 TIGR01182 eda Entner-Doudoroff 85.2 1.1 2.5E-05 40.2 4.0 37 54-92 145-181 (204)
42 COG2185 Sbm Methylmalonyl-CoA 84.7 5.8 0.00013 34.1 7.9 68 17-92 61-128 (143)
43 PRK05718 keto-hydroxyglutarate 84.5 3.4 7.5E-05 37.2 6.8 63 15-92 124-188 (212)
44 cd04726 KGPDC_HPS 3-Keto-L-gul 84.3 2.3 5E-05 36.5 5.4 37 56-94 157-193 (202)
45 PRK07807 inosine 5-monophospha 83.4 2.6 5.5E-05 42.5 6.1 131 7-152 227-368 (479)
46 cd02072 Glm_B12_BD B12 binding 83.1 9.2 0.0002 32.1 8.4 52 33-92 64-121 (128)
47 TIGR01305 GMP_reduct_1 guanosi 82.0 3.5 7.6E-05 40.1 6.2 94 7-109 107-208 (343)
48 TIGR03128 RuMP_HxlA 3-hexulose 81.7 6.7 0.00014 34.0 7.3 37 56-94 157-193 (206)
49 cd04729 NanE N-acetylmannosami 81.5 3.3 7.2E-05 36.6 5.4 35 57-93 177-212 (219)
50 PRK08072 nicotinate-nucleotide 81.3 9.1 0.0002 36.0 8.5 44 57-105 232-275 (277)
51 cd00564 TMP_TenI Thiamine mono 78.7 2.4 5.2E-05 35.5 3.5 36 56-93 149-184 (196)
52 PRK06543 nicotinate-nucleotide 78.6 9.1 0.0002 36.2 7.6 67 22-105 214-280 (281)
53 PF01645 Glu_synthase: Conserv 78.6 6.3 0.00014 38.6 6.7 56 34-103 257-314 (368)
54 PRK01130 N-acetylmannosamine-6 78.5 4.8 0.0001 35.5 5.5 34 57-92 173-207 (221)
55 PF01081 Aldolase: KDPG and KH 78.4 1.6 3.5E-05 39.0 2.5 38 54-93 145-182 (196)
56 PRK02261 methylaspartate mutas 78.2 15 0.00032 30.8 8.1 64 21-92 56-125 (137)
57 KOG2550 IMP dehydrogenase/GMP 77.6 3.8 8.2E-05 41.1 4.9 93 22-127 264-367 (503)
58 PRK06559 nicotinate-nucleotide 77.3 14 0.00029 35.2 8.4 68 22-106 218-285 (290)
59 PRK08883 ribulose-phosphate 3- 75.8 19 0.00042 32.4 8.7 35 57-93 167-201 (220)
60 PLN02716 nicotinate-nucleotide 75.5 18 0.0004 34.7 8.8 68 21-105 229-305 (308)
61 COG0800 Eda 2-keto-3-deoxy-6-p 75.1 4 8.6E-05 37.2 4.0 37 54-92 150-186 (211)
62 PRK09140 2-dehydro-3-deoxy-6-p 75.1 12 0.00027 33.3 7.2 37 54-92 147-184 (206)
63 PRK08745 ribulose-phosphate 3- 74.9 8 0.00017 35.2 6.0 37 54-93 169-205 (223)
64 TIGR00693 thiE thiamine-phosph 74.8 3.6 7.8E-05 35.3 3.6 36 57-94 152-187 (196)
65 TIGR01303 IMP_DH_rel_1 IMP deh 73.3 7.9 0.00017 39.0 6.0 131 7-152 225-366 (475)
66 PRK00043 thiE thiamine-phospha 72.9 4.3 9.3E-05 35.0 3.6 37 56-94 159-195 (212)
67 TIGR01302 IMP_dehydrog inosine 71.4 4.8 0.00011 39.9 4.0 131 6-152 223-365 (450)
68 TIGR01037 pyrD_sub1_fam dihydr 71.4 15 0.00033 33.8 7.1 33 58-92 235-268 (300)
69 PRK05567 inosine 5'-monophosph 70.1 9.6 0.00021 38.2 5.8 129 7-152 228-369 (486)
70 cd02932 OYE_YqiM_FMN Old yello 69.7 9.2 0.0002 36.1 5.4 76 5-94 240-327 (336)
71 TIGR01334 modD putative molybd 69.7 26 0.00057 33.0 8.3 66 22-102 209-274 (277)
72 PRK07695 transcriptional regul 69.6 4.9 0.00011 35.0 3.2 36 57-94 149-184 (201)
73 PRK05581 ribulose-phosphate 3- 67.8 18 0.00038 31.5 6.4 36 58-95 171-206 (220)
74 PRK06015 keto-hydroxyglutarate 66.4 10 0.00022 34.1 4.6 37 54-92 141-177 (201)
75 PRK06843 inosine 5-monophospha 66.3 8.7 0.00019 38.1 4.6 133 6-152 152-294 (404)
76 COG0269 SgbH 3-hexulose-6-phos 66.1 31 0.00067 31.7 7.7 36 58-95 165-200 (217)
77 PTZ00314 inosine-5'-monophosph 65.3 21 0.00045 36.1 7.1 131 6-151 240-381 (495)
78 TIGR00177 molyb_syn molybdenum 64.6 57 0.0012 27.1 8.6 69 7-87 28-100 (144)
79 COG0157 NadC Nicotinate-nucleo 63.7 63 0.0014 30.8 9.5 47 56-107 233-279 (280)
80 PRK14057 epimerase; Provisiona 63.5 18 0.0004 33.7 5.9 45 38-92 182-226 (254)
81 PRK08091 ribulose-phosphate 3- 63.4 20 0.00044 32.8 6.1 46 37-92 167-212 (228)
82 PRK07259 dihydroorotate dehydr 62.1 29 0.00062 32.1 7.0 34 57-92 234-268 (301)
83 TIGR01163 rpe ribulose-phospha 62.1 19 0.00042 30.8 5.5 35 58-94 166-200 (210)
84 PRK10605 N-ethylmaleimide redu 61.8 20 0.00043 34.7 6.0 44 58-107 293-336 (362)
85 cd00429 RPE Ribulose-5-phospha 61.6 26 0.00057 29.9 6.2 36 57-94 166-201 (211)
86 TIGR02129 hisA_euk phosphoribo 61.1 34 0.00073 32.0 7.2 69 9-93 41-110 (253)
87 cd04740 DHOD_1B_like Dihydroor 60.0 52 0.0011 30.3 8.2 35 57-93 231-266 (296)
88 cd04731 HisF The cyclase subun 59.2 29 0.00062 31.0 6.2 75 7-93 150-229 (243)
89 PF00478 IMPDH: IMP dehydrogen 59.0 11 0.00024 36.7 3.7 130 8-152 109-249 (352)
90 cd02803 OYE_like_FMN_family Ol 58.0 42 0.00092 31.1 7.3 37 57-94 281-318 (327)
91 PTZ00170 D-ribulose-5-phosphat 57.8 75 0.0016 28.6 8.7 35 57-93 173-207 (228)
92 cd04735 OYE_like_4_FMN Old yel 57.6 23 0.00049 34.0 5.6 75 5-94 234-320 (353)
93 PRK04302 triosephosphate isome 56.8 35 0.00076 30.3 6.4 37 56-94 172-209 (223)
94 cd00311 TIM Triosephosphate is 55.0 32 0.0007 31.6 5.9 54 33-91 179-232 (242)
95 PF00733 Asn_synthase: Asparag 54.7 18 0.00039 31.3 4.1 53 38-92 1-56 (255)
96 PTZ00441 sporozoite surface pr 54.1 37 0.00081 35.3 6.7 36 54-89 148-189 (576)
97 cd02933 OYE_like_FMN Old yello 52.6 45 0.00097 31.9 6.7 37 57-94 285-321 (338)
98 cd04734 OYE_like_3_FMN Old yel 52.4 36 0.00078 32.5 6.0 76 5-94 227-322 (343)
99 PRK07107 inosine 5-monophospha 52.3 31 0.00067 35.1 5.8 96 4-108 239-341 (502)
100 cd00452 KDPG_aldolase KDPG and 52.2 83 0.0018 27.2 7.8 64 5-80 15-78 (190)
101 PRK07028 bifunctional hexulose 52.0 52 0.0011 32.2 7.2 35 58-94 163-197 (430)
102 PRK07114 keto-hydroxyglutarate 52.0 1.2E+02 0.0025 27.7 9.0 17 213-229 200-216 (222)
103 PRK09426 methylmalonyl-CoA mut 51.7 57 0.0012 34.7 7.8 69 16-92 630-698 (714)
104 PRK00278 trpC indole-3-glycero 51.4 52 0.0011 30.3 6.7 36 58-95 213-248 (260)
105 cd02931 ER_like_FMN Enoate red 51.4 41 0.0009 32.7 6.3 74 5-94 251-342 (382)
106 COG0036 Rpe Pentose-5-phosphat 50.3 30 0.00065 31.8 4.9 36 57-94 169-204 (220)
107 PF00834 Ribul_P_3_epim: Ribul 50.1 15 0.00032 32.9 2.8 46 37-92 154-199 (201)
108 cd04733 OYE_like_2_FMN Old yel 50.1 55 0.0012 31.0 6.9 37 57-94 292-329 (338)
109 PRK13307 bifunctional formalde 49.9 49 0.0011 32.7 6.6 36 57-94 330-365 (391)
110 PRK08508 biotin synthase; Prov 48.5 1.1E+02 0.0025 28.1 8.6 70 5-86 42-118 (279)
111 TIGR01182 eda Entner-Doudoroff 48.4 1.2E+02 0.0025 27.4 8.3 64 5-80 19-82 (204)
112 cd02801 DUS_like_FMN Dihydrour 48.3 50 0.0011 28.8 5.9 38 56-94 182-220 (231)
113 PRK13523 NADPH dehydrogenase N 48.0 29 0.00063 33.3 4.6 35 58-93 276-311 (337)
114 PRK04180 pyridoxal biosynthesi 47.8 88 0.0019 30.0 7.7 73 18-94 140-241 (293)
115 PRK06052 5-methyltetrahydropte 46.6 22 0.00048 34.7 3.6 42 198-240 273-314 (344)
116 PRK09722 allulose-6-phosphate 46.5 45 0.00097 30.5 5.4 36 54-92 167-203 (229)
117 PLN02334 ribulose-phosphate 3- 46.4 27 0.00058 31.2 3.9 35 57-93 174-208 (229)
118 TIGR03572 WbuZ glycosyl amidat 46.3 69 0.0015 28.3 6.5 32 57-90 197-230 (232)
119 PF15560 Imm8: Immunity protei 46.2 22 0.00047 30.2 3.0 63 31-93 18-89 (133)
120 cd02808 GltS_FMN Glutamate syn 45.5 87 0.0019 30.6 7.6 47 37-92 271-319 (392)
121 cd02810 DHOD_DHPD_FMN Dihydroo 45.5 80 0.0017 28.8 7.0 35 57-93 243-278 (289)
122 cd00381 IMPDH IMPDH: The catal 45.4 69 0.0015 30.5 6.7 131 6-152 93-235 (325)
123 PRK13125 trpA tryptophan synth 44.3 25 0.00054 31.8 3.4 33 58-92 186-219 (244)
124 cd01469 vWA_integrins_alpha_su 43.9 43 0.00093 28.4 4.6 38 53-90 101-144 (177)
125 cd02930 DCR_FMN 2,4-dienoyl-Co 43.8 31 0.00067 32.9 4.1 76 5-94 223-313 (353)
126 PRK08005 epimerase; Validated 43.4 35 0.00076 30.8 4.2 33 59-93 165-197 (210)
127 cd00331 IGPS Indole-3-glycerol 43.4 96 0.0021 27.1 6.9 37 56-94 171-208 (217)
128 cd06294 PBP1_ycjW_transcriptio 42.8 1.3E+02 0.0028 25.9 7.6 63 13-85 28-90 (270)
129 PLN02429 triosephosphate isome 42.7 56 0.0012 31.5 5.6 55 33-92 242-297 (315)
130 PRK08898 coproporphyrinogen II 42.6 1.3E+02 0.0029 29.2 8.3 71 19-89 71-143 (394)
131 cd01473 vWA_CTRP CTRP for CS 42.3 82 0.0018 27.4 6.2 35 55-89 108-150 (192)
132 PRK00042 tpiA triosephosphate 42.0 68 0.0015 29.7 5.9 54 34-92 184-237 (250)
133 PRK07379 coproporphyrinogen II 41.6 1.6E+02 0.0034 28.7 8.7 80 10-89 52-136 (400)
134 cd04738 DHOD_2_like Dihydrooro 41.0 78 0.0017 29.9 6.4 34 57-92 280-314 (327)
135 cd02911 arch_FMN Archeal FMN-b 39.9 1.2E+02 0.0026 27.4 7.2 31 57-89 191-222 (233)
136 cd04722 TIM_phosphate_binding 39.8 33 0.00071 27.9 3.2 31 56-88 169-200 (200)
137 cd00885 cinA Competence-damage 39.1 98 0.0021 26.7 6.2 38 7-44 20-57 (170)
138 PRK09431 asnB asparagine synth 38.9 78 0.0017 32.5 6.3 57 31-89 204-276 (554)
139 cd04730 NPD_like 2-Nitropropan 38.6 28 0.0006 30.6 2.7 40 57-98 156-196 (236)
140 cd01454 vWA_norD_type norD typ 38.1 43 0.00092 28.0 3.7 38 55-92 103-156 (174)
141 cd01464 vWA_subfamily VWA subf 37.2 1.1E+02 0.0024 25.5 6.1 36 55-90 107-149 (176)
142 TIGR00262 trpA tryptophan synt 37.2 36 0.00077 31.4 3.3 33 58-92 199-232 (256)
143 COG0800 Eda 2-keto-3-deoxy-6-p 37.1 1.4E+02 0.003 27.3 7.0 40 5-44 24-63 (211)
144 cd01477 vWA_F09G8-8_type VWA F 37.0 62 0.0013 28.4 4.7 37 53-89 129-172 (193)
145 COG1058 CinA Predicted nucleot 36.4 1E+02 0.0022 28.9 6.2 51 6-67 21-71 (255)
146 PF00977 His_biosynth: Histidi 36.4 1E+02 0.0022 27.6 6.1 34 57-92 191-225 (229)
147 PRK13361 molybdenum cofactor b 36.0 2E+02 0.0043 27.0 8.2 63 10-76 105-177 (329)
148 PRK03670 competence damage-ind 35.9 1E+02 0.0022 28.6 6.0 50 7-66 21-70 (252)
149 PRK05718 keto-hydroxyglutarate 34.6 2.5E+02 0.0055 25.2 8.3 26 6-31 27-52 (212)
150 cd01542 PBP1_TreR_like Ligand- 34.6 2.6E+02 0.0055 23.9 8.1 63 13-86 23-86 (259)
151 PRK06015 keto-hydroxyglutarate 34.5 2.5E+02 0.0053 25.3 8.1 63 5-79 15-77 (201)
152 PRK14567 triosephosphate isome 34.4 1.4E+02 0.0029 27.9 6.7 36 56-92 201-236 (253)
153 PF01791 DeoC: DeoC/LacD famil 34.3 1.6E+02 0.0034 26.3 6.9 72 5-87 148-230 (236)
154 cd00381 IMPDH IMPDH: The catal 33.9 2.8E+02 0.0061 26.3 8.9 39 57-97 197-236 (325)
155 cd01456 vWA_ywmD_type VWA ywmD 33.9 1.3E+02 0.0028 25.9 6.2 36 54-89 133-179 (206)
156 PLN02274 inosine-5'-monophosph 33.9 73 0.0016 32.4 5.2 131 6-152 247-389 (505)
157 cd04747 OYE_like_5_FMN Old yel 33.8 69 0.0015 31.1 4.8 22 7-28 196-219 (361)
158 TIGR01501 MthylAspMutase methy 33.8 2.8E+02 0.006 23.3 7.9 50 34-91 67-122 (134)
159 smart00878 Biotin_carb_C Bioti 33.3 14 0.0003 29.9 -0.1 33 58-90 52-84 (107)
160 PF06135 DUF965: Bacterial pro 33.0 38 0.00082 26.5 2.3 36 10-46 23-64 (79)
161 cd06297 PBP1_LacI_like_12 Liga 32.6 2.4E+02 0.0052 24.6 7.8 65 11-85 21-85 (269)
162 PRK13585 1-(5-phosphoribosyl)- 32.6 1.3E+02 0.0029 26.5 6.2 35 57-93 193-228 (241)
163 TIGR01306 GMP_reduct_2 guanosi 32.6 1.3E+02 0.0029 29.0 6.5 72 7-87 94-167 (321)
164 PTZ00077 asparagine synthetase 32.3 1.2E+02 0.0026 31.4 6.6 56 32-89 215-284 (586)
165 COG3693 XynA Beta-1,4-xylanase 32.0 56 0.0012 31.9 3.8 24 70-93 209-232 (345)
166 TIGR01536 asn_synth_AEB aspara 32.0 1.3E+02 0.0028 29.6 6.5 56 32-89 231-290 (467)
167 cd04742 NPD_FabD 2-Nitropropan 31.8 3.2E+02 0.007 27.4 9.2 73 20-97 178-258 (418)
168 PLN02561 triosephosphate isome 31.3 1.3E+02 0.0028 28.1 5.9 53 34-90 184-236 (253)
169 cd06278 PBP1_LacI_like_2 Ligan 31.2 2.3E+02 0.0051 24.1 7.3 65 12-87 22-86 (266)
170 cd06273 PBP1_GntR_like_1 This 31.2 3E+02 0.0065 23.6 8.0 64 11-85 21-85 (268)
171 cd02940 DHPD_FMN Dihydropyrimi 30.8 2.5E+02 0.0054 26.1 7.9 34 57-92 252-286 (299)
172 PRK13585 1-(5-phosphoribosyl)- 30.8 1.9E+02 0.004 25.6 6.8 75 6-92 32-110 (241)
173 cd01471 vWA_micronemal_protein 30.8 1.5E+02 0.0033 24.7 6.0 37 54-90 107-149 (186)
174 cd04731 HisF The cyclase subun 30.7 1.6E+02 0.0035 26.2 6.4 74 7-93 28-106 (243)
175 PF01081 Aldolase: KDPG and KH 30.6 2.7E+02 0.0058 24.9 7.7 63 5-79 19-81 (196)
176 PRK14905 triosephosphate isome 30.1 1.3E+02 0.0029 29.3 6.1 51 37-92 197-247 (355)
177 PF15643 Tox-PL-2: Papain fold 29.6 62 0.0013 26.4 3.1 26 5-30 22-47 (100)
178 cd01472 vWA_collagen von Wille 29.5 1.1E+02 0.0023 25.1 4.7 37 53-89 101-141 (164)
179 cd01475 vWA_Matrilin VWA_Matri 29.0 1.1E+02 0.0024 26.8 5.0 33 56-88 109-145 (224)
180 TIGR00735 hisF imidazoleglycer 28.8 2.1E+02 0.0046 25.9 6.9 77 7-94 31-110 (254)
181 PRK12928 lipoyl synthase; Prov 28.6 2.9E+02 0.0062 26.0 7.9 74 6-86 90-171 (290)
182 PRK08207 coproporphyrinogen II 28.4 1.7E+02 0.0036 29.7 6.6 70 19-88 216-289 (488)
183 PRK14565 triosephosphate isome 27.9 1.5E+02 0.0032 27.4 5.7 36 56-92 188-223 (237)
184 cd01480 vWA_collagen_alpha_1-V 27.8 2.4E+02 0.0052 23.9 6.7 36 53-88 107-150 (186)
185 PRK08649 inosine 5-monophospha 27.8 1.7E+02 0.0036 28.7 6.3 43 56-100 255-298 (368)
186 PRK13396 3-deoxy-7-phosphohept 27.7 2.9E+02 0.0064 27.0 8.0 78 6-93 115-197 (352)
187 PRK06552 keto-hydroxyglutarate 27.4 3E+02 0.0066 24.7 7.6 38 54-91 38-77 (213)
188 PLN02411 12-oxophytodienoate r 27.4 1.9E+02 0.0042 28.2 6.7 50 58-115 314-363 (391)
189 cd06283 PBP1_RegR_EndR_KdgR_li 27.3 3.4E+02 0.0074 23.1 7.6 63 13-86 23-86 (267)
190 cd06318 PBP1_ABC_sugar_binding 27.3 2.9E+02 0.0063 23.9 7.3 64 11-85 21-87 (282)
191 PRK08649 inosine 5-monophospha 27.2 1.3E+02 0.0027 29.5 5.4 87 6-106 141-242 (368)
192 cd06298 PBP1_CcpA_like Ligand- 27.0 4E+02 0.0086 22.7 8.1 63 14-86 24-86 (268)
193 TIGR00736 nifR3_rel_arch TIM-b 27.0 2.1E+02 0.0047 26.1 6.6 73 7-91 149-224 (231)
194 smart00633 Glyco_10 Glycosyl h 27.0 1.6E+02 0.0035 26.5 5.8 36 56-92 117-163 (254)
195 cd06295 PBP1_CelR Ligand bindi 26.9 3.2E+02 0.0069 23.6 7.5 64 11-86 32-95 (275)
196 PRK13398 3-deoxy-7-phosphohept 26.9 3.1E+02 0.0067 25.5 7.7 73 5-93 40-123 (266)
197 cd00758 MoCF_BD MoCF_BD: molyb 26.8 2.3E+02 0.005 23.0 6.2 33 10-42 23-55 (133)
198 cd06309 PBP1_YtfQ_like Peripla 26.7 3.2E+02 0.0069 23.7 7.5 62 13-85 23-87 (273)
199 PRK05660 HemN family oxidoredu 26.6 2.4E+02 0.0051 27.2 7.1 70 20-89 57-128 (378)
200 PRK15492 triosephosphate isome 26.6 1.7E+02 0.0038 27.2 6.0 48 38-90 197-244 (260)
201 PTZ00333 triosephosphate isome 26.5 1.6E+02 0.0035 27.3 5.7 54 35-92 188-241 (255)
202 TIGR00433 bioB biotin syntheta 26.1 4.8E+02 0.01 23.6 8.7 69 6-87 65-140 (296)
203 cd01450 vWFA_subfamily_ECM Von 26.0 1.1E+02 0.0023 24.1 4.0 35 54-88 102-142 (161)
204 COG3142 CutC Uncharacterized p 26.0 96 0.0021 29.0 4.1 55 23-77 56-112 (241)
205 COG0149 TpiA Triosephosphate i 25.9 2E+02 0.0044 26.9 6.2 56 31-92 181-236 (251)
206 TIGR01949 AroFGH_arch predicte 25.8 3.8E+02 0.0083 24.2 8.0 36 57-94 192-234 (258)
207 PRK02615 thiamine-phosphate py 25.6 70 0.0015 31.1 3.3 36 57-94 294-329 (347)
208 cd06316 PBP1_ABC_sugar_binding 25.6 3.2E+02 0.0069 24.2 7.4 65 12-85 22-88 (294)
209 TIGR03104 trio_amidotrans aspa 25.6 2E+02 0.0043 29.7 6.7 55 33-89 239-296 (589)
210 cd03466 Nitrogenase_NifN_2 Nit 25.5 3.7E+02 0.008 26.4 8.4 63 6-79 310-372 (429)
211 TIGR00381 cdhD CO dehydrogenas 25.4 2.9E+02 0.0063 27.6 7.5 53 16-77 150-212 (389)
212 PF04123 DUF373: Domain of unk 25.4 2.4E+02 0.0052 27.6 6.9 70 7-81 52-124 (344)
213 PTZ00413 lipoate synthase; Pro 25.3 2.7E+02 0.0058 27.9 7.2 65 8-81 182-255 (398)
214 PF05985 EutC: Ethanolamine am 25.1 39 0.00084 31.4 1.4 35 34-73 86-120 (237)
215 cd01482 vWA_collagen_alphaI-XI 25.1 1.2E+02 0.0027 25.0 4.3 35 54-88 102-140 (164)
216 TIGR03151 enACPred_II putative 25.1 3.2E+02 0.0068 25.8 7.5 38 57-96 161-199 (307)
217 cd00958 DhnA Class I fructose- 24.8 3.7E+02 0.0081 23.6 7.6 35 59-95 181-222 (235)
218 PRK00876 nadE NAD synthetase; 24.7 1.8E+02 0.0039 28.1 5.8 57 30-89 10-68 (326)
219 TIGR03108 eps_aminotran_1 exos 24.6 2.2E+02 0.0048 29.3 6.9 56 31-88 235-293 (628)
220 PRK10550 tRNA-dihydrouridine s 24.4 3E+02 0.0064 26.1 7.2 80 7-88 118-202 (312)
221 cd01458 vWA_ku Ku70/Ku80 N-ter 24.1 2.4E+02 0.0052 24.6 6.2 58 29-90 105-174 (218)
222 COG1902 NemA NADH:flavin oxido 24.0 3.6E+02 0.0079 26.3 7.9 35 58-93 289-324 (363)
223 cd07410 MPP_CpdB_N Escherichia 23.9 5.4E+02 0.012 23.2 9.2 29 3-33 27-55 (277)
224 PRK14024 phosphoribosyl isomer 23.9 1.8E+02 0.0039 26.2 5.5 73 7-94 33-111 (241)
225 TIGR01304 IMP_DH_rel_2 IMP deh 23.9 1.7E+02 0.0036 28.8 5.5 60 40-108 245-305 (369)
226 TIGR02134 transald_staph trans 23.8 1.6E+02 0.0036 27.1 5.2 46 26-80 147-194 (236)
227 PRK11815 tRNA-dihydrouridine s 23.7 2.5E+02 0.0054 26.7 6.6 33 57-92 205-238 (333)
228 KOG2799 Succinyl-CoA synthetas 23.6 1.4E+02 0.0031 29.8 4.9 46 9-70 363-408 (434)
229 cd06271 PBP1_AglR_RafR_like Li 23.4 4E+02 0.0087 22.6 7.4 64 12-85 26-89 (268)
230 PF03060 NMO: Nitronate monoox 23.4 1.6E+02 0.0035 27.8 5.3 65 19-98 164-230 (330)
231 cd02812 PcrB_like PcrB_like pr 23.3 3.2E+02 0.007 24.9 7.0 70 8-93 137-210 (219)
232 TIGR02814 pfaD_fam PfaD family 23.3 4.3E+02 0.0093 26.8 8.4 60 32-96 201-262 (444)
233 PRK01215 competence damage-ind 23.3 2.4E+02 0.0051 26.2 6.2 51 7-68 24-74 (264)
234 PRK08255 salicylyl-CoA 5-hydro 23.2 2.5E+02 0.0055 29.8 7.1 35 58-93 688-723 (765)
235 cd04727 pdxS PdxS is a subunit 22.7 4.5E+02 0.0098 25.1 8.0 35 58-94 195-232 (283)
236 PRK12376 putative translaldola 22.7 2E+02 0.0044 26.5 5.6 46 26-80 147-194 (236)
237 cd00198 vWFA Von Willebrand fa 22.7 2.8E+02 0.006 21.1 5.7 35 54-88 100-141 (161)
238 PLN02549 asparagine synthase ( 22.7 2.1E+02 0.0045 29.7 6.2 54 34-89 205-270 (578)
239 PF00994 MoCF_biosynth: Probab 22.6 2.1E+02 0.0045 23.3 5.2 39 7-45 18-56 (144)
240 COG2390 DeoR Transcriptional r 22.5 3.3E+02 0.0071 26.3 7.1 79 22-110 55-148 (321)
241 cd06305 PBP1_methylthioribose_ 22.4 4.6E+02 0.0099 22.5 7.6 64 12-86 22-88 (273)
242 cd00887 MoeA MoeA family. Memb 22.3 4.7E+02 0.01 25.5 8.3 92 6-117 195-290 (394)
243 cd02929 TMADH_HD_FMN Trimethyl 21.8 2.5E+02 0.0055 27.1 6.3 36 57-93 289-325 (370)
244 PF13519 VWA_2: von Willebrand 21.7 1.8E+02 0.004 22.9 4.6 37 55-91 99-139 (172)
245 PRK05465 ethanolamine ammonia- 21.6 1.1E+02 0.0024 28.9 3.6 61 25-92 86-153 (260)
246 COG1059 Thermostable 8-oxoguan 21.5 86 0.0019 28.6 2.8 57 10-88 75-131 (210)
247 cd01467 vWA_BatA_type VWA BatA 20.9 3.4E+02 0.0073 22.3 6.2 34 56-89 103-143 (180)
248 PRK10415 tRNA-dihydrouridine s 20.8 3.6E+02 0.0079 25.5 7.1 34 58-92 195-229 (321)
249 PRK09058 coproporphyrinogen II 20.8 3.7E+02 0.008 26.7 7.3 67 21-89 114-184 (449)
250 PRK09249 coproporphyrinogen II 20.7 4.6E+02 0.0099 25.9 8.0 71 19-89 100-172 (453)
251 PRK10703 DNA-binding transcrip 20.4 5.8E+02 0.013 23.0 8.1 31 57-87 117-148 (341)
252 TIGR02151 IPP_isom_2 isopenten 20.2 79 0.0017 30.1 2.4 36 56-93 253-289 (333)
No 1
>PLN02885 nicotinate phosphoribosyltransferase
Probab=100.00 E-value=3.1e-71 Score=548.77 Aligned_cols=254 Identities=90% Similarity=1.449 Sum_probs=245.5
Q ss_pred CcCchHHHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcCCc
Q 024420 1 MRSGVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHE 80 (268)
Q Consensus 1 l~sGv~nai~Va~~L~~~G~~l~GVRlDSGDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g~~ 80 (268)
++||++|||+||++|+++|+++.|||+|||||++||+++|++||+++|+|+++|+++++|++||||||++|.+|.++|++
T Consensus 292 l~sg~~n~~~v~~~l~~~g~~~~GVRlDSGDl~~ls~~~r~~~~~~~~~l~~~g~~~~kIv~Sn~Lde~~i~~L~~~g~~ 371 (545)
T PLN02885 292 MKSGIPNFCAVALALNDLGYKAVGIRLDSGDLAYLSLEARKFFRTIEEELGVPGFGKMSITASNDINEETLDALNKQGHE 371 (545)
T ss_pred HHHHHHHHHHHHHHHHhcCcccCeeEECCCChHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCHHHHHHHHHcCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEeecCcccccCCCCccceEEEEeEECCccccccCCCCCCCCCCccceeeeeccCCCCeeeeEEecCCCCCCCCCCce
Q 024420 81 VDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYGKEGYPLVDIMTGENEPPPKVGERI 160 (268)
Q Consensus 81 id~fGVGT~Lvt~~~~p~l~~vyKLve~~g~P~~K~S~~~~K~t~PG~K~vyR~~~~~g~~~~D~i~l~~e~~~~~~~~~ 160 (268)
||+|||||+|+||.++|+||||||||+++|+|++|+|++++|.|+||+|+|||+|+++|++.+|+|++.+|++|..++++
T Consensus 372 id~fGVGT~LvT~~~~p~l~~VyKLVe~~g~p~~KlS~~~~K~t~PG~K~vyR~~~~~g~~~~D~i~l~~e~~~~~~~~~ 451 (545)
T PLN02885 372 IDAFGIGTHLVTCYAQPALGCVYKLVEINGQPRIKLSEDVEKVTIPCKKRCYRLYGKEGYPLVDLMTGENEPPPKVGERI 451 (545)
T ss_pred ccEEecCCccccCCCCCCCceEEEEEEECCeeeeEecCCCCCccCCcceEEEEEEcCCCCEEEEEEecCCCCCCCCCCce
Confidence 99999999999999999999999999999999999999999999999999999998789999999999999767778999
Q ss_pred eecCCCCccccccccCccccccceeeecCCCCCCCccccccccccccccCCCCcHHHHHHHHHHHHhcCChhhhhccCCc
Q 024420 161 LCRHPFNESKRAYVVPQKVEELLKCYWPGSSGGDYPMVFGDVQFLNKRREDLPTLKDTRERCIKQLEQMRPDHMRRLNPT 240 (268)
Q Consensus 161 ~~~~p~~~~~~~~i~~~~~e~LL~~v~~~~~G~~~~~~~~~~~~~~~~~~~~~sL~~iR~~~~~~l~~l~~~~~r~~~p~ 240 (268)
.|+||+++|+++.+.+..+++||+|||++++| +++++.|+|++||+|+++||++|||+++|++||+
T Consensus 452 ~~~~p~~~~~~~~~~~~~~~~Ll~~~~~~g~g--------------~~~~~~~~l~~~r~~~~~~l~~l~~~~~r~~~p~ 517 (545)
T PLN02885 452 LCRHPFNESKRAYVVPQRVEELLKCYWDGSSG--------------KPREELPSLKEIRERCMKQLERMRPDHMRRLNPT 517 (545)
T ss_pred EEeCCccchheeeeccccHHhhhHHHeECCCC--------------cCcCCCCCHHHHHHHHHHHHhhCCHHHHhccCCc
Confidence 99999999999999999999999999987778 8889999999999999999999999999999999
Q ss_pred ccccccCHHHHHHHHHHHHccCCCCCCC
Q 024420 241 PYKVSVSAKLYDFIHFLWLNEAPVGELQ 268 (268)
Q Consensus 241 ~Y~V~ls~~L~~l~~~L~~~~~~~~~~~ 268 (268)
+|+|++|++|++++++||+++++++|++
T Consensus 518 ~y~V~~s~~l~~~~~~l~~~~~~~~~~~ 545 (545)
T PLN02885 518 PYKVSVSAKLYDFIHFLWLNEAPVGELQ 545 (545)
T ss_pred cceeccCHHHHHHHHHHHHhcCccccCC
Confidence 9999999999999999999988888864
No 2
>PRK09243 nicotinate phosphoribosyltransferase; Validated
Probab=100.00 E-value=2.4e-56 Score=436.55 Aligned_cols=222 Identities=42% Similarity=0.605 Sum_probs=211.3
Q ss_pred cCchHHHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcCCcc
Q 024420 2 RSGVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEV 81 (268)
Q Consensus 2 ~sGv~nai~Va~~L~~~G~~l~GVRlDSGDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g~~i 81 (268)
+|||+||++|+++|.+ |.++.|||+|||||+++++++|++||++ |++++||++||||||++|.+|..+|+++
T Consensus 239 ~~~i~~~~~~~~~l~~-~~~~~gVRlDSGDl~~l~~~vr~~ld~~-------G~~~~kIi~S~gLde~~i~~l~~~g~~i 310 (464)
T PRK09243 239 KSGVPNAIKVAKELGD-GIELGGVRIDSGDLAYLSKKVRKMLDEA-------GFTDTKIVASNDLDEYTIASLKLQGAPI 310 (464)
T ss_pred HhHHHHHHHHHHHhhc-cccCceeeCCCCCHHHHHHHHHHHHHHC-------CCCCcEEEEeCCCCHHHHHHHHhCCCCc
Confidence 4799999999999877 7889999999999999999999999997 8999999999999999999999999999
Q ss_pred cEEeecCcccccCCCCccceEEEEeEECCc----cccccCCCCCCCCCCccceeeeeccCCCCeeeeEEecCCCCCCCCC
Q 024420 82 DAFGIGTYLVTCYAQAALGCVFKLVEINKQ----PRIKLSEDVSKVSIPCKKRSYRLYGKEGYPLVDIMTGENEPPPKVG 157 (268)
Q Consensus 82 d~fGVGT~Lvt~~~~p~l~~vyKLve~~g~----P~~K~S~~~~K~t~PG~K~vyR~~~~~g~~~~D~i~l~~e~~~~~~ 157 (268)
|+|||||+|+|+.++|+++||||||+++|. |++|+|++++|.|+||+|+|||+|+++|++..|+|++.+|+ + +
T Consensus 311 d~fGvGt~L~~~~~~~~l~~v~Klv~~~g~g~w~p~~K~s~~~~K~t~pG~k~v~R~~~~~~~~~~d~i~~~~e~-~--~ 387 (464)
T PRK09243 311 DGFGVGTKLVTGSDAPALGGVYKLVAIEGEGGMIPKIKLSNSPEKVTTPGRKQVYRIYDKGGKAEADVITLADEE-E--E 387 (464)
T ss_pred eEEEcCccccCCCCCCccceEEEEeEecCCCCccceeecccCCCCcCCCcceEEEEEEcCCCCcceEEEeccCCC-c--c
Confidence 999999999999999999999999999985 99999999999999999999999987789999999999886 3 6
Q ss_pred CceeecCCCCccccccccCccccccceeeecCCCCCCCccccccccccccccCCCCcHHHHHHHHHHHHhcCChhhhhcc
Q 024420 158 ERILCRHPFNESKRAYVVPQKVEELLKCYWPGSSGGDYPMVFGDVQFLNKRREDLPTLKDTRERCIKQLEQMRPDHMRRL 237 (268)
Q Consensus 158 ~~~~~~~p~~~~~~~~i~~~~~e~LL~~v~~~~~G~~~~~~~~~~~~~~~~~~~~~sL~~iR~~~~~~l~~l~~~~~r~~ 237 (268)
+++.|+||.+++++..+.+..+++||+|+| .+| +++.+.|+|++||+|+++||++||++++|+.
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~G--------------~~~~~~~~l~~~r~~~~~~l~~l~~~~~~l~ 451 (464)
T PRK09243 388 EPLKMFHPVHTYKSKTVKNFDAEPLLVPVM--ENG--------------KRVYELPSLEEIRAYAAAQLASLPEEYKRLL 451 (464)
T ss_pred ccceeecccchhhhhcccccchhhhhHHHh--cCC--------------EEcCCCCCHHHHHHHHHHHHHhCCHHHhccc
Confidence 789999999999999999989999999999 578 8999999999999999999999999999999
Q ss_pred CCcccccccCHHH
Q 024420 238 NPTPYKVSVSAKL 250 (268)
Q Consensus 238 ~p~~Y~V~ls~~L 250 (268)
||++|||.+|++|
T Consensus 452 ~p~~y~v~~s~~l 464 (464)
T PRK09243 452 NPHAYPVDLSQAL 464 (464)
T ss_pred CCCceeEEecCCC
Confidence 9999999999875
No 3
>TIGR01513 NAPRTase_put putative nicotinate phosphoribosyltransferase. Most members of this family are Gram-positive bacteria. An additional set of mutually closely related archaeal sequences score between the trusted and noise cutoffs.
Probab=100.00 E-value=3.8e-55 Score=425.91 Aligned_cols=214 Identities=42% Similarity=0.657 Sum_probs=199.7
Q ss_pred cCchHHHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcCCcc
Q 024420 2 RSGVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEV 81 (268)
Q Consensus 2 ~sGv~nai~Va~~L~~~G~~l~GVRlDSGDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g~~i 81 (268)
+||++||++++++|++.| .+.|||+|||||+++++++|++||++ |++++||++||||||++|.+|.++|+++
T Consensus 230 ~sg~~~~~~~~~~l~~~~-~~~gVR~DSGD~~~l~~~vr~~ld~~-------G~~~vkIi~S~gLde~~i~~l~~~g~~~ 301 (443)
T TIGR01513 230 RSGLPNAIAVAKELGEQG-KVVGVRIDSGDLLYLSKQARKQLDAA-------GLTQVKIVVSNDLDENSIAALKAEGAPI 301 (443)
T ss_pred hhhHHHHHHHHHHHhhhc-CceeEecCCCCHHHHHHHHHHHHHHc-------CCCCcEEEEeCCCCHHHHHHHHHCCCce
Confidence 589999999999997766 67899999999999999999999998 8999999999999999999999999999
Q ss_pred cEEeecCcccccCCCCccceEEEEeEECCccccccCCCCCCCCCCccceeeeeccCCCCeeeeEEecCCCCCCCCCCcee
Q 024420 82 DAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYGKEGYPLVDIMTGENEPPPKVGERIL 161 (268)
Q Consensus 82 d~fGVGT~Lvt~~~~p~l~~vyKLve~~g~P~~K~S~~~~K~t~PG~K~vyR~~~~~g~~~~D~i~l~~e~~~~~~~~~~ 161 (268)
|+|||||+|+||.++|+++||||||+++|+|++|+|++++|.|+||+|+|||+|+.+|.+..|+|++.+|+ +..+++..
T Consensus 302 d~fGvGt~L~t~~~~~~l~~v~Klv~~~G~pv~K~sd~~~K~t~pG~k~v~R~~~~~g~~~~d~i~~~~e~-~~~~~~~~ 380 (443)
T TIGR01513 302 DVYGVGTSLVTASDAPALGGVYKLVAYEGRPVMKLSENPEKSTLPGRKQVFRLYDATGKFLGDELTLADEP-IEDLNQEK 380 (443)
T ss_pred eEEecCcceeecCCCCccceEEEEEeECCeeeEecCCCCcCccCCcceEEEEEeCCCCCeeeEEEEecCCC-Ccccccee
Confidence 99999999999999999999999999999999999999999999999999999986788999999999986 44466778
Q ss_pred ecCCCCccccccccCccccccceeeecCCCCCCCccccccccccccccCCCCcHHHHHHHHHHHHhcCChhhhhccCCcc
Q 024420 162 CRHPFNESKRAYVVPQKVEELLKCYWPGSSGGDYPMVFGDVQFLNKRREDLPTLKDTRERCIKQLEQMRPDHMRRLNPTP 241 (268)
Q Consensus 162 ~~~p~~~~~~~~i~~~~~e~LL~~v~~~~~G~~~~~~~~~~~~~~~~~~~~~sL~~iR~~~~~~l~~l~~~~~r~~~p~~ 241 (268)
|+||.. ..++||+||| .+| +++.+.|||++||+|+++||++||++++|+.||++
T Consensus 381 ~~~~~~----------~~~~ll~~v~--~~G--------------~~~~~~~~l~eir~~~~~~l~~l~~~~~rl~~p~~ 434 (443)
T TIGR01513 381 CTPVFA----------PVEPLLRLVM--KNG--------------QRVRPLPSLAEIRARAREQLSKLPPEYLRLLNPHV 434 (443)
T ss_pred eecCCc----------chhcchhhee--ECC--------------EEeCCCCCHHHHHHHHHHHHHhCCHHHhcccCCcc
Confidence 888863 4589999999 578 89998899999999999999999999999999999
Q ss_pred cccccCHHH
Q 024420 242 YKVSVSAKL 250 (268)
Q Consensus 242 Y~V~ls~~L 250 (268)
|+|.+|++|
T Consensus 435 y~v~~s~~l 443 (443)
T TIGR01513 435 YPVSLSPRL 443 (443)
T ss_pred ceeeccCCC
Confidence 999999875
No 4
>PRK12484 nicotinate phosphoribosyltransferase; Provisional
Probab=100.00 E-value=9.6e-54 Score=416.19 Aligned_cols=208 Identities=34% Similarity=0.501 Sum_probs=193.9
Q ss_pred chHHHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcCCcccE
Q 024420 4 GVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDA 83 (268)
Q Consensus 4 Gv~nai~Va~~L~~~G~~l~GVRlDSGDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g~~id~ 83 (268)
|++|||+||++|.+ |.++.|||+|||||+++++++|++||++ |+++++|++||||||++|.+|.++|+++|+
T Consensus 234 ~i~~ai~v~~~l~~-~~~~~gVRlDSGDl~~l~~~~r~~ld~~-------G~~~~kIi~S~gLde~~i~~l~~~g~~id~ 305 (443)
T PRK12484 234 GVRNAIEVAKELGN-RFDPRGVRLDSGDLAELSKATRAILDAA-------GLEQVKIVASGGLDEYRIAALLAAGAPIDG 305 (443)
T ss_pred HHHHHHHHHHHhhc-ccCcceeeCCCCCHHHHHHHHHHHHHHC-------CCCCcEEEEeCCCCHHHHHHHHHCCCcCeE
Confidence 89999999999976 7888999999999999999999999997 899999999999999999999999999999
Q ss_pred EeecCcccccCCCCccceEEEEeEECCccccccCCCCCCCCCCccceeeeeccCCCCeeeeEEecCCCCCCCCCCceeec
Q 024420 84 FGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYGKEGYPLVDIMTGENEPPPKVGERILCR 163 (268)
Q Consensus 84 fGVGT~Lvt~~~~p~l~~vyKLve~~g~P~~K~S~~~~K~t~PG~K~vyR~~~~~g~~~~D~i~l~~e~~~~~~~~~~~~ 163 (268)
|||||+|+|+.++|+++||||||+++|+|++|+|+ +|.|+||+|+|||+|+. +.+..|++++.+|+++. +
T Consensus 306 fGvGt~L~~~~~~p~l~~v~Klv~~~g~pv~K~s~--~K~t~pG~k~v~R~~~~-~~~~~d~i~~~~e~~~~-~------ 375 (443)
T PRK12484 306 FGVGTRLGVAADAPVLDSAYKLVAYEGRGVTKLSS--GKVTYPGRKQVFRLYEH-GTACGDVIGLHTENIPD-G------ 375 (443)
T ss_pred EeeCcccccCCCCCccceEEEEEEecCCCeEEeCC--CCCCCCCceEEEEEcCC-CCceeEEEEecCCCCCC-c------
Confidence 99999999999999999999999999999999986 99999999999999974 44788999999986332 1
Q ss_pred CCCCccccccccCccccccceeeecCCCCCCCccccccccccccccCCCCcHHHHHHHHHHHHhcCChhhhhccCCcccc
Q 024420 164 HPFNESKRAYVVPQKVEELLKCYWPGSSGGDYPMVFGDVQFLNKRREDLPTLKDTRERCIKQLEQMRPDHMRRLNPTPYK 243 (268)
Q Consensus 164 ~p~~~~~~~~i~~~~~e~LL~~v~~~~~G~~~~~~~~~~~~~~~~~~~~~sL~~iR~~~~~~l~~l~~~~~r~~~p~~Y~ 243 (268)
.++||+||| .+| +++.+.|||++||+|+++|+++||++++|+.||++|+
T Consensus 376 ---------------~~~ll~~v~--~~G--------------~~~~~~~~l~eir~~~~~~l~~l~~~~~~l~~p~~y~ 424 (443)
T PRK12484 376 ---------------REPLLVPVM--TNG--------------RRIQHAPTLDGARDWCEAQLAALPPEARRLVDPVAVS 424 (443)
T ss_pred ---------------ccchhhhhe--ECC--------------EEeCCCCCHHHHHHHHHHHHHhCCHHHHhccCCccce
Confidence 258999999 578 8888889999999999999999999999999999999
Q ss_pred cccCHHHHHHHHHHHHc
Q 024420 244 VSVSAKLYDFIHFLWLN 260 (268)
Q Consensus 244 V~ls~~L~~l~~~L~~~ 260 (268)
|.+|++|++++++|+.+
T Consensus 425 v~~s~~l~~~~~~l~~~ 441 (443)
T PRK12484 425 VTLSGELARLRHADTAE 441 (443)
T ss_pred eeeCHHHHHHHHHHHHh
Confidence 99999999999999964
No 5
>PHA02594 nadV nicotinamide phosphoribosyl transferase; Provisional
Probab=100.00 E-value=5.3e-34 Score=278.93 Aligned_cols=177 Identities=24% Similarity=0.297 Sum_probs=149.2
Q ss_pred CchHHHH-HHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHH-hHhhCCCCC----CCeEEEEeCCCCHHHHHHHh-
Q 024420 3 SGVPNFC-AVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTI-EKEFGVPDF----EKMSITASNDLNEETLDALN- 75 (268)
Q Consensus 3 sGv~nai-~Va~~L~~~G~~l~GVRlDSGDl~~ls~~~R~~ld~~-~~~l~~~G~----~~vkIi~S~~Lde~~I~~l~- 75 (268)
.||+|+| +|+.++.+.|.++ |||+|||||++++++++++|.+. |-++|.+|+ ++++|++||||||++|++|+
T Consensus 275 ~~v~~~i~~l~~~i~~~~~~l-~IR~DSGD~~~l~~~~~~~L~~~FG~~ln~~G~kvL~~~v~Ii~gd~ide~~i~~il~ 353 (470)
T PHA02594 275 RAVTEILPELKDEIMARGGKL-VIRPDSGDPVDIICGALETLGEIFGGTVNSKGYKVLDEHVRLIQGDGITLERINRILT 353 (470)
T ss_pred HHHHHHHHHHHHHHHhCCCcE-EEeCCCCCHHHHHHHHHHHHHHhcCCcccCccccccCCCeEEEEcCCCCHHHHHHHHH
Confidence 3899999 9999988888888 99999999999999999999776 888889999 99999999999999999955
Q ss_pred ---hcC--CcccEEeecCcccccCCCCccceEEEEeEE--CCc--cccccC-CCCCCCCCCccceeeeeccCCCCe-eee
Q 024420 76 ---KQG--HEVDAFGIGTYLVTCYAQAALGCVFKLVEI--NKQ--PRIKLS-EDVSKVSIPCKKRSYRLYGKEGYP-LVD 144 (268)
Q Consensus 76 ---~~g--~~id~fGVGT~Lvt~~~~p~l~~vyKLve~--~g~--P~~K~S-~~~~K~t~PG~K~vyR~~~~~g~~-~~D 144 (268)
++| +++++|||||+|+|+.++|+++||||||++ +|+ |++|.+ ++.+|.|.||+|+ |.++ +|.+ ..|
T Consensus 354 ~L~~~G~~a~n~~fGvGt~l~q~~~rdt~g~ayKl~~~~~~G~~~~~~K~Pktd~gK~S~~Gr~~--~~~~-~g~~~~~~ 430 (470)
T PHA02594 354 RMKENGFASENVAFGMGGGLLQMVTRDTFKFAMKATAIKINGKWKGVFKNPKTDEGKKSKKGRLA--RVKD-GGSFKTVD 430 (470)
T ss_pred HHHHCCCCCCcceEecCccceecCCCcccCceEEEEEEecCCceeeeeccCcCCCCCccccceeE--EEEc-CCceeEee
Confidence 689 577799999999999999999999999988 465 679876 6679999999999 4544 4654 445
Q ss_pred EEecCCCCCCCCCCceeecCCCCccccccccCccccccceeeecCCCCCCCccccccccccccccCCCCcHHHHHHHHHH
Q 024420 145 IMTGENEPPPKVGERILCRHPFNESKRAYVVPQKVEELLKCYWPGSSGGDYPMVFGDVQFLNKRREDLPTLKDTRERCIK 224 (268)
Q Consensus 145 ~i~l~~e~~~~~~~~~~~~~p~~~~~~~~i~~~~~e~LL~~v~~~~~G~~~~~~~~~~~~~~~~~~~~~sL~~iR~~~~~ 224 (268)
.+ ..|..+ + .++||++|| ++| +++.+ +||++||+|+.+
T Consensus 431 ~~--~~e~~~--~---------------------~~~lL~~v~--~~G--------------~~~~~-~sl~eiR~r~~~ 468 (470)
T PHA02594 431 GL--EEQSEA--D---------------------LNDALVTYF--DDG--------------KLVRY-QSLAEIRERSDI 468 (470)
T ss_pred ec--cccccc--c---------------------ccchhheee--ECC--------------EECCC-CCHHHHHHHHHh
Confidence 54 222211 1 257999999 578 88877 899999999987
Q ss_pred H
Q 024420 225 Q 225 (268)
Q Consensus 225 ~ 225 (268)
+
T Consensus 469 ~ 469 (470)
T PHA02594 469 Q 469 (470)
T ss_pred c
Confidence 6
No 6
>PRK09198 putative nicotinate phosphoribosyltransferase; Provisional
Probab=100.00 E-value=4.6e-34 Score=279.20 Aligned_cols=173 Identities=20% Similarity=0.280 Sum_probs=145.6
Q ss_pred chHHHHHHHHHHhh----cCCCccEEeeCCCChHHHHHHHHHHHHHH-hHhhCCCCC----CCeEEEEeCCCCHHHHHH-
Q 024420 4 GVPNFCAVALALND----LGYKAVGIRLDSGDLAYLSCEARKFFRTI-EKEFGVPDF----EKMSITASNDLNEETLDA- 73 (268)
Q Consensus 4 Gv~nai~Va~~L~~----~G~~l~GVRlDSGDl~~ls~~~R~~ld~~-~~~l~~~G~----~~vkIi~S~~Lde~~I~~- 73 (268)
||+|+ ++++|++ .|.++ |||||||||+++++++|++||++ |.++|.+|+ ++|+|++||||||++|++
T Consensus 270 ~i~~i--~~~~L~~~i~~~~~~l-~VR~DSGD~~~i~~~vr~~L~e~fG~t~n~kGykvL~~~v~Ii~s~glde~~i~~i 346 (463)
T PRK09198 270 AITEP--WGGELKDEILARGGTL-VIRPDSGDPVTIICGTLELLDEIFGGTVNSKGYKVLNPHVGVIQGDGITLDSIEAI 346 (463)
T ss_pred HHHHH--HHHHHhhhhhccCCcE-EEECCCCCHHHHHHHHHHHHHHhhCcccccCcccccCCCeEEEEeCCCCHHHHHHH
Confidence 78884 4445543 67788 99999999999999999999999 999999996 399999999999999999
Q ss_pred ---HhhcCCccc--EEeecCcccccCCCCccceEEEEeEE--CC--ccccccC-CCCCCCCCCccceeeeeccCCCCeee
Q 024420 74 ---LNKQGHEVD--AFGIGTYLVTCYAQAALGCVFKLVEI--NK--QPRIKLS-EDVSKVSIPCKKRSYRLYGKEGYPLV 143 (268)
Q Consensus 74 ---l~~~g~~id--~fGVGT~Lvt~~~~p~l~~vyKLve~--~g--~P~~K~S-~~~~K~t~PG~K~vyR~~~~~g~~~~ 143 (268)
|.++|+++| +|||||+|+|+.++|+++||||||++ +| +|++|.+ ++.+|.|.||+|+|||. +|.+
T Consensus 347 l~~l~~~G~~~dni~FGvGt~l~~~~~r~t~~~a~Kl~~~~~~G~~~~v~K~P~t~~gK~S~~G~k~v~r~---~~~~-- 421 (463)
T PRK09198 347 LEALKAKGFAAENIVFGMGGALLQYVNRDTQGFAMKASAIEVNGEWRDIFKDPITDQGKKSKKGRLKLIKD---NGEY-- 421 (463)
T ss_pred HHHHHhCCCccccceEecCcccccCCCCCccCceEEEEEEeeCCccceeeccCcCCCCCcCccceeEEEEc---CCcc--
Confidence 557899998 99999999999999999999999966 55 4999976 56699999999999997 3433
Q ss_pred eEEecCCCCCCCCCCceeecCCCCccccccccCccccccceeeecCCCCCCCccccccccccccccCCCCcHHHHHHHHH
Q 024420 144 DIMTGENEPPPKVGERILCRHPFNESKRAYVVPQKVEELLKCYWPGSSGGDYPMVFGDVQFLNKRREDLPTLKDTRERCI 223 (268)
Q Consensus 144 D~i~l~~e~~~~~~~~~~~~~p~~~~~~~~i~~~~~e~LL~~v~~~~~G~~~~~~~~~~~~~~~~~~~~~sL~~iR~~~~ 223 (268)
|.+.+.++. + . .++||+||| ++| +++.+ ++|++||+|+.
T Consensus 422 ~~v~~~~~~-~-~----------------------~~~lL~~v~--~~G--------------~l~~~-~~l~eiR~r~~ 460 (463)
T PRK09198 422 RTVDLDEAG-D-E----------------------NDDLLQTVF--ENG--------------KLLVE-YSLAEIRARLH 460 (463)
T ss_pred eEEeccccC-C-C----------------------ccchhhhhe--eCC--------------EECCC-CCHHHHHHHHh
Confidence 666665543 1 1 258999999 578 88874 78999999997
Q ss_pred HH
Q 024420 224 KQ 225 (268)
Q Consensus 224 ~~ 225 (268)
++
T Consensus 461 ~~ 462 (463)
T PRK09198 461 AA 462 (463)
T ss_pred hc
Confidence 64
No 7
>KOG2511 consensus Nicotinic acid phosphoribosyltransferase [Coenzyme transport and metabolism]
Probab=100.00 E-value=1.6e-34 Score=270.90 Aligned_cols=168 Identities=64% Similarity=0.942 Sum_probs=156.0
Q ss_pred CcCchHHHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcCCc
Q 024420 1 MRSGVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHE 80 (268)
Q Consensus 1 l~sGv~nai~Va~~L~~~G~~l~GVRlDSGDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g~~ 80 (268)
++||++|+|+|+.+|... |||+|||||+++|+++|+++-..+..+. +.+..|-+.+||+++|.+|..+.++|++
T Consensus 251 ~~~~~~nf~Av~lal~~~-----GvR~DSGdl~~~skkvr~~y~~v~~~~K-~~~~~m~~~a~N~~ne~ti~~lnkq~~e 324 (420)
T KOG2511|consen 251 FLKSFPNFCAVALALNDL-----GVRQDSGDLAEYSKKVRKHYCDVERDPK-PSKGIMYSDALNVLNEITIDALNKQGGE 324 (420)
T ss_pred HHhcCCccchhhhhhhhc-----ceeccCCCHHHHHHHHHHHHHHhhccCC-CcceEEEEecccchhHHHHHHHHhcCCc
Confidence 368999999999999765 5999999999999999999999865554 5677788999999999999999999999
Q ss_pred ccEEeecCcccccCCCCccceEEEEeEECCccccccCCCCCCCCCCccceeeeeccCCCCeeeeEEecCCCCCCCCCCce
Q 024420 81 VDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYGKEGYPLVDIMTGENEPPPKVGERI 160 (268)
Q Consensus 81 id~fGVGT~Lvt~~~~p~l~~vyKLve~~g~P~~K~S~~~~K~t~PG~K~vyR~~~~~g~~~~D~i~l~~e~~~~~~~~~ 160 (268)
+++|||||+|+|| .|+ +.+| ||+|+|..|.|+||.|.+||+++++|.++.|++.+++||+|.+++.+
T Consensus 325 ~~aFGIGTnl~t~-~q~-----------~sqP-iKLseDvtkvSiP~~K~~~RLfg~eG~plvdi~~~~~ep~p~~gq~l 391 (420)
T KOG2511|consen 325 VDAFGIGTNLTTD-FQK-----------NSQP-IKLSEDVTKVSIPGNKIVIRLFGKEGYPLVDISDLENEPPPDPGQVL 391 (420)
T ss_pred eeeeccccccccc-ccc-----------ccCC-cccccccceeccccchhheehhccCCchhhhHhhccCCCCCCCCceE
Confidence 9999999999999 566 6689 99999999999999999999999999999999999999999999999
Q ss_pred eecCCCCccccccccCccccccceeeec
Q 024420 161 LCRHPFNESKRAYVVPQKVEELLKCYWP 188 (268)
Q Consensus 161 ~~~~p~~~~~~~~i~~~~~e~LL~~v~~ 188 (268)
.|+||+. ++++++.|..+++|++++|+
T Consensus 392 ~~khp~~-~~~~~vip~~ve~llk~~w~ 418 (420)
T KOG2511|consen 392 RVKHPLN-SKRAYVIPQRVEELLKCYWR 418 (420)
T ss_pred Eeecccc-ccccccchhhhHHHHHHHhc
Confidence 9999999 88899999999999999995
No 8
>COG1488 PncB Nicotinic acid phosphoribosyltransferase [Coenzyme metabolism]
Probab=99.97 E-value=5.2e-32 Score=261.50 Aligned_cols=159 Identities=35% Similarity=0.465 Sum_probs=134.4
Q ss_pred cCchHHHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEe-CCCCHHHHHHHhhcCCc
Q 024420 2 RSGVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITAS-NDLNEETLDALNKQGHE 80 (268)
Q Consensus 2 ~sGv~nai~Va~~L~~~G~~l~GVRlDSGDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S-~~Lde~~I~~l~~~g~~ 80 (268)
.+|+.|++.+++++.. ..+.|||+|||||.++++++|++||+. |+++++||+| |++||..|+.++.+|++
T Consensus 246 ~~~~~~~~~~~~~~~~--~~~~GVR~DSGd~~~~~~kvr~~ld~~-------G~~~~~Ii~Sdg~lde~~i~~l~~~g~~ 316 (405)
T COG1488 246 DDAFLNAIKVAKALGD--KRLDGVRLDSGDPRELSEKVRAHLDKL-------GYDPVKIIVSDGLLDEKIIALLRAFGAR 316 (405)
T ss_pred hHHHHHhHHHHHhccc--ccceEEECCCCCHHHHHHHHHHHHHHc-------CCCceEEEEeCCcchHHHHHHHHHhCCC
Confidence 3589999999998744 478899999999999999999999997 9999999999 99999999999999999
Q ss_pred ccEEeecCcccccCCCCccceEEEEeEECCccccccCCCCCCCCCCccceeeeeccCCCCeeeeEEecCCCCCCCCCCce
Q 024420 81 VDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYGKEGYPLVDIMTGENEPPPKVGERI 160 (268)
Q Consensus 81 id~fGVGT~Lvt~~~~p~l~~vyKLve~~g~P~~K~S~~~~K~t~PG~K~vyR~~~~~g~~~~D~i~l~~e~~~~~~~~~ 160 (268)
+|+|||||+|+|..++|++++||||||++|+|++|+|++ ||+|++||.++... . .....++.
T Consensus 317 ~d~FGvGT~L~~~~~~~~~~~v~Klvev~g~p~~Kis~~------Pgkk~~~r~~~~~~-~---~~~~~~~~-------- 378 (405)
T COG1488 317 NDAFGVGTNLTTAKPRPPLDIVYKLVEVNGKPVAKISKN------PGKKQVYRSAFVRE-L---LVVFGDEI-------- 378 (405)
T ss_pred ccEeccchhhccCCCCCcceeEEEEEEECCccceeecCC------Cccceeecchhhhh-h---heeccccc--------
Confidence 999999999999999999999999999999999999974 89999999874111 0 01111110
Q ss_pred eecCCCCccccccccCccccccceeeecCCCCCCCccccccccccccccCCCCcHHHHHHHHH
Q 024420 161 LCRHPFNESKRAYVVPQKVEELLKCYWPGSSGGDYPMVFGDVQFLNKRREDLPTLKDTRERCI 223 (268)
Q Consensus 161 ~~~~p~~~~~~~~i~~~~~e~LL~~v~~~~~G~~~~~~~~~~~~~~~~~~~~~sL~~iR~~~~ 223 (268)
..++||++|| ++| ++++ ||++||+|+.
T Consensus 379 -----------------~~~~l~~~~~--~~G---------------~~~~--~l~~ir~~~~ 405 (405)
T COG1488 379 -----------------TYEPLLVKVF--ENG---------------LLYD--SLDEIRERAL 405 (405)
T ss_pred -----------------cchhHHHHHH--hCC---------------eecC--CHHHHHHhhC
Confidence 0178999999 678 4555 9999999973
No 9
>cd01401 PncB_like Nicotinate phosphoribosyltransferase (NAPRTase), related to PncB. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. This subgroup is present in bacteria, archea and funghi.
Probab=99.97 E-value=3e-30 Score=247.27 Aligned_cols=112 Identities=29% Similarity=0.336 Sum_probs=103.6
Q ss_pred chHHHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCC-CCeE-EEEeCCCCHHHHHHHhh--cCC
Q 024420 4 GVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDF-EKMS-ITASNDLNEETLDALNK--QGH 79 (268)
Q Consensus 4 Gv~nai~Va~~L~~~G~~l~GVRlDSGDl~~ls~~~R~~ld~~~~~l~~~G~-~~vk-Ii~S~~Lde~~I~~l~~--~g~ 79 (268)
|.++|++++.++ .+..+.|||+|||||.+|++++|++||++ |+ +++| |++||||||++|.+|.+ +|+
T Consensus 258 ~t~~f~~~~~~~--~~~~~~GvR~DSGD~~~~~~k~r~~~~~~-------Gi~p~~K~iv~Sd~Lde~~i~~L~~~~~g~ 328 (377)
T cd01401 258 GTDAFLRDFDLY--FAKLFDGVRHDSGDPFEWGEKAIAHYEKL-------GIDPKTKTLVFSDGLDVEKALELYEYFKGR 328 (377)
T ss_pred CCHHHHHHHHHH--hcccCCEEeeCCCCHHHHHHHHHHHHHHc-------CCCCCCcEEEEcCCCCHHHHHHHHHHHcCC
Confidence 568999998873 45678999999999999999999999997 75 7788 99999999999999998 899
Q ss_pred cccEEeecCcccccCC----CCccceEEEEeEECCccccccCCCCCCCC
Q 024420 80 EVDAFGIGTYLVTCYA----QAALGCVFKLVEINKQPRIKLSEDVSKVS 124 (268)
Q Consensus 80 ~id~fGVGT~Lvt~~~----~p~l~~vyKLve~~g~P~~K~S~~~~K~t 124 (268)
++|+|||||+|+|+.+ +|++++|||||++||+|++|+|++++|.|
T Consensus 329 ~~~~FGIGT~L~~d~~~~~~~~pl~~V~KLv~~~g~P~~KlSd~~~K~t 377 (377)
T cd01401 329 IKVSFGIGTNLTNDFGNKEKSTPLNIVIKLVECNGRPVAKISDSPGKNM 377 (377)
T ss_pred cceeEecCcceecCCCcccCCCCcceEEEEEEECCcceeEecCCCccCC
Confidence 9999999999999887 99999999999999999999999999986
No 10
>PRK05321 nicotinate phosphoribosyltransferase; Provisional
Probab=99.96 E-value=3e-29 Score=241.90 Aligned_cols=119 Identities=26% Similarity=0.286 Sum_probs=103.8
Q ss_pred chHHHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCC--CeEEEEeCCCCHHHHHHHhhc--CC
Q 024420 4 GVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFE--KMSITASNDLNEETLDALNKQ--GH 79 (268)
Q Consensus 4 Gv~nai~Va~~L~~~G~~l~GVRlDSGDl~~ls~~~R~~ld~~~~~l~~~G~~--~vkIi~S~~Lde~~I~~l~~~--g~ 79 (268)
+..+|++++.+ ..+..+.|||+|||||++|++++|++||++ |++ +++|++||||||++|.+|.++ +.
T Consensus 261 ~t~~fl~~f~~--~~~~~~~GvRlDSGD~~~~~~k~~~~~~~~-------G~dp~~k~Iv~S~~Lde~~i~~L~~~~~~~ 331 (400)
T PRK05321 261 GMDAFLRDFDL--YFAKLFDGLRHDSGDPIEWGEKAIAHYEKL-------GIDPRTKTLVFSDGLDFDKALELYRHFKGR 331 (400)
T ss_pred CcHHHHHHHHH--HhcccCCEEeeCCCCHHHHHHHHHHHHHHc-------CCCCCCeEEEEeCCCCHHHHHHHHHHhcCC
Confidence 34577777533 246778999999999999999999999996 663 458999999999999999886 56
Q ss_pred cccEEeecCcccccC-CCCccceEEEEeEECCccccccCCCCCCCCCCcccee
Q 024420 80 EVDAFGIGTYLVTCY-AQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRS 131 (268)
Q Consensus 80 ~id~fGVGT~Lvt~~-~~p~l~~vyKLve~~g~P~~K~S~~~~K~t~PG~K~v 131 (268)
.+|+|||||+|+|+. ++|+|++|||||+++|+|++|+|++++|.|.|...-+
T Consensus 332 i~~~fGIGT~Lt~~~~~~p~l~~V~KLv~~~g~P~~KlSd~~~K~t~p~~~~~ 384 (400)
T PRK05321 332 IKLSFGIGTNLTNDFPGVKPLNIVIKLVECNGRPVAKLSDSPGKTMCDDPEFL 384 (400)
T ss_pred CcceEecCcceecCCCCCCCcceEEEEEEECCeeeEEecCCCcccCCCCHHHH
Confidence 677999999999999 8999999999999999999999999999998876543
No 11
>TIGR01514 NAPRTase nicotinate phosphoribosyltransferase. This model represents nicotinate phosphoribosyltransferase, the first enzyme in the salvage pathway of NAD biosynthesis from nicontinate (niacin). Members are primary proteobacterial but also include yeasts and Methanosarcina acetivorans. A related family, apparently non-overlapping in species distribution, is TIGR01513. Members of that family differ in substantially in sequence and have a long C-terminal extension missing from this family, but are proposed also to act as nicotinate phosphoribosyltransferase (see model TIGR01513).
Probab=99.96 E-value=5e-29 Score=239.85 Aligned_cols=112 Identities=29% Similarity=0.308 Sum_probs=102.6
Q ss_pred chHHHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCC-CCCeE-EEEeCCCCHHHHHHHhh--cCC
Q 024420 4 GVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPD-FEKMS-ITASNDLNEETLDALNK--QGH 79 (268)
Q Consensus 4 Gv~nai~Va~~L~~~G~~l~GVRlDSGDl~~ls~~~R~~ld~~~~~l~~~G-~~~vk-Ii~S~~Lde~~I~~l~~--~g~ 79 (268)
+.++|++++.+..+. .+.|||+|||||.+|++++|++|+++ | .+++| |++||||||++|.+|.+ +|+
T Consensus 261 ~t~~f~~~~~~~~~~--~~~GvR~DSGD~~~~~~~~~~~~~~~-------gidp~~K~iv~Sd~Lde~~i~~L~~~~~g~ 331 (394)
T TIGR01514 261 TTDAFLRDFRPPFAD--AYDGLRHDSGDPVEWGDKAIAHYQKL-------GIDPKSKIIIFSDSLDVEKAIELSHYFKGR 331 (394)
T ss_pred CCHHHHHHHHHHhcc--cCCEEecCCCCHHHHHHHHHHHHHHc-------CCCCCCcEEEEcCCCCHHHHHHHHHHhcCC
Confidence 458999998654443 45899999999999999999999997 7 57788 67899999999999998 899
Q ss_pred cccEEeecCcccccCC-CCccceEEEEeEECCccccccCCCCCCCC
Q 024420 80 EVDAFGIGTYLVTCYA-QAALGCVFKLVEINKQPRIKLSEDVSKVS 124 (268)
Q Consensus 80 ~id~fGVGT~Lvt~~~-~p~l~~vyKLve~~g~P~~K~S~~~~K~t 124 (268)
++|+|||||+|+|+.+ +|++++|||||+++|+|++|+|++++|.|
T Consensus 332 ~~d~FGVGT~l~~d~~~~~~l~~V~Klv~~~g~P~~KlSd~~~K~t 377 (394)
T TIGR01514 332 VKASFGIGTNLTNDFGKVEPLNIVIKLVECNGNPVAKLSDSPGKTM 377 (394)
T ss_pred CceeEecCcceecCCCCCCCcceEEEEEEECCccceEecCCCcccC
Confidence 9999999999999998 99999999999999999999999999998
No 12
>PF04095 NAPRTase: Nicotinate phosphoribosyltransferase (NAPRTase) family; InterPro: IPR015977 Nicotinate phosphoribosyltransferase (2.4.2.11 from EC) is the rate-limiting enzyme that catalyses the first reaction in the NAD salvage synthesis. This family also contains a number of closely related proteins for which a catalytic activity has not been experimentally demonstrated.; GO: 0004516 nicotinate phosphoribosyltransferase activity, 0009435 NAD biosynthetic process, 0005737 cytoplasm; PDB: 3OS4_B 1VLP_C 2F7F_A 1YIR_D 1YBE_B 2H3D_A 2H3B_B 2GVL_B 2IM5_B 2G96_B ....
Probab=99.95 E-value=4.4e-29 Score=226.41 Aligned_cols=131 Identities=40% Similarity=0.534 Sum_probs=110.7
Q ss_pred cCchHHHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCC---CCeEEEEeCCCCHHHHHHHhhcC
Q 024420 2 RSGVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDF---EKMSITASNDLNEETLDALNKQG 78 (268)
Q Consensus 2 ~sGv~nai~Va~~L~~~G~~l~GVRlDSGDl~~ls~~~R~~ld~~~~~l~~~G~---~~vkIi~S~~Lde~~I~~l~~~g 78 (268)
.++++++|.+...+++.+ ++.|||+|||||.++++++|++|+++ .|++|+ ++++|++||+|||++|.+|.+++
T Consensus 94 ~~~L~~~i~~~~~~~~~~-~~~gvR~DSGD~~~~~~~~r~~f~~~---~~~~g~kvl~~~~Ii~Sd~Lde~~i~~l~~~~ 169 (245)
T PF04095_consen 94 GIALKDAIGTRGFLKDFG-RFLGVRPDSGDPAELSEKLRKIFDEA---VGIKGYKVLPSKKIIASDGLDEEKIEELLEQG 169 (245)
T ss_dssp CEEEHHHHTHHHHHHCSS-HSEEEEE-SS-HHHHHHHHHHHHHHT---ETTTGGEE-TCSEEEEESS-SHHHHHHHHHHH
T ss_pred ccccchheeccchhcccc-cceeeecCCCChHHHHHHHHHHHHHH---hCCCCccccceEEEEEeCCCCHHHHHHHHHHh
Confidence 468999999999998887 77899999999999999999999996 466775 78899999999999999999988
Q ss_pred Cc---ccEEeecCcccccCCC---------CccceEEEEeEECCccccccCCCCCCCC---CCccceeeeecc
Q 024420 79 HE---VDAFGIGTYLVTCYAQ---------AALGCVFKLVEINKQPRIKLSEDVSKVS---IPCKKRSYRLYG 136 (268)
Q Consensus 79 ~~---id~fGVGT~Lvt~~~~---------p~l~~vyKLve~~g~P~~K~S~~~~K~t---~PG~K~vyR~~~ 136 (268)
++ +++|||||+|+||.++ |++++|||+++++|+|++|+|++.+|.| .++.+.++|.|+
T Consensus 170 ~~~g~~~~fGVGT~L~t~~~~~~~~~~~K~~~l~~v~Klv~~~~~P~~K~S~~~~K~t~~~~~~~~~~k~vf~ 242 (245)
T PF04095_consen 170 AEKGFNDSFGVGTNLVTDFDRPTLGFVYKLPALNIVGKLVEINGQPVIKLSDDSEKGTCGDPEGIKYLKRVFE 242 (245)
T ss_dssp CCTTSEEEEEESHHHHSSCTTTTTTEEEEEEEEEEEEEEEEETTEETTBGGSSTTGSSGGGHHHHHHHHHHEC
T ss_pred hcccceeEeecCchheeeCCCCccCceeccccceeCCeEEEeCCCCCccCCCCCCCCcCCCHHHHHHHHHHhC
Confidence 88 9999999999999999 6666666667778899999999999999 334556666553
No 13
>cd01569 PBEF_like pre-B-cell colony-enhancing factor (PBEF)-like. The mammalian members of this group of nicotinate phosphoribosyltransferases (NAPRTases) were originally identified as genes whose expression is upregulated upon activation in lymphoid cells. In general, nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis.
Probab=99.94 E-value=3.3e-26 Score=220.80 Aligned_cols=123 Identities=20% Similarity=0.266 Sum_probs=110.9
Q ss_pred chHHHHHHHHH-HhhcCCCccEEeeCCCChHHHHHHHHHHHHHH-hHhhCCCCC----CCeEEEEeCCCCHHHHHH----
Q 024420 4 GVPNFCAVALA-LNDLGYKAVGIRLDSGDLAYLSCEARKFFRTI-EKEFGVPDF----EKMSITASNDLNEETLDA---- 73 (268)
Q Consensus 4 Gv~nai~Va~~-L~~~G~~l~GVRlDSGDl~~ls~~~R~~ld~~-~~~l~~~G~----~~vkIi~S~~Lde~~I~~---- 73 (268)
+++|++.++++ +.+.|.++ |||+|||||+++++++|++||++ |-+.|.+|+ ++++|++||||||++|++
T Consensus 268 ~~~~~~~~lk~~i~~~g~~l-viRpDSGD~~~l~~~~~~~L~~~FG~~~n~kGykvl~~~v~Ii~gd~ide~~i~~Il~~ 346 (407)
T cd01569 268 ALTLWGPRLKDEILARGGTL-VIRPDSGDPVDIICGVLEILGEIFGGTVNSKGYKVLNPHVRIIQGDGITLERIEEILER 346 (407)
T ss_pred HHHHHHHHHHHHHHhcCCcE-EEECCCCCHHHHHHHHHHHHHHHhCCcccCCcccccCCceEEEEcCCCCHHHHHHHHHH
Confidence 38999999998 45678888 99999999999999999999998 889999995 699999999999999996
Q ss_pred HhhcCCccc--EEeecCcccccCCCCccceEEEEeEE--CCc--cccccC-CCCCCCCCCc
Q 024420 74 LNKQGHEVD--AFGIGTYLVTCYAQAALGCVFKLVEI--NKQ--PRIKLS-EDVSKVSIPC 127 (268)
Q Consensus 74 l~~~g~~id--~fGVGT~Lvt~~~~p~l~~vyKLve~--~g~--P~~K~S-~~~~K~t~PG 127 (268)
|.++|+++| +|||||+|+|+.++|+++||||||++ +|+ |++|-+ +|++|.+..|
T Consensus 347 L~~~G~~~dNi~fGvGt~l~q~~~rdt~~~ayK~~~~~~~g~~~~v~K~P~td~~k~sk~g 407 (407)
T cd01569 347 LKAKGFASENIVFGMGGGLLQKVTRDTQGFAMKASAIEINGKWRDVFKDPKTDPGKKSKKG 407 (407)
T ss_pred HHHCCCccccceEecCccceecCCCcccCceeEEEEEecCCeeeeeeeCCCCCCccccCCC
Confidence 667999999 99999999999999999999999988 453 999999 7888887544
No 14
>cd01570 NAPRTase_A Nicotinate phosphoribosyltransferase (NAPRTase), subgroup A. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. This subgroup is present in bacteria and eukaryota (except funghi).
Probab=99.93 E-value=5.8e-26 Score=213.94 Aligned_cols=98 Identities=60% Similarity=0.873 Sum_probs=94.7
Q ss_pred cCchHHHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcCCcc
Q 024420 2 RSGVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEV 81 (268)
Q Consensus 2 ~sGv~nai~Va~~L~~~G~~l~GVRlDSGDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g~~i 81 (268)
+||+++|++++++|.+.|.++.|||+|||||.++++++|++||+. |+++++|++||||||++|.+|.++|+++
T Consensus 230 ~~~~~~~l~~~~~l~~~~~~~~gvR~DSGd~~~~~~~~r~~l~~~-------G~~~~~Iv~Sdgld~~~i~~l~~~g~~~ 302 (327)
T cd01570 230 RSGLPNAIAVAKELGALGYRLVGVRIDSGDLAYLSKEARKMLDEA-------GLTKVKIVASNDLDEYTIAALNAQGAPI 302 (327)
T ss_pred hhhHHHHHHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHHHHHC-------CCCCcEEEEeCCCCHHHHHHHHHCCCee
Confidence 379999999999998889999999999999999999999999997 8899999999999999999999999999
Q ss_pred cEEeecCcccccCCCCccceEEEEe
Q 024420 82 DAFGIGTYLVTCYAQAALGCVFKLV 106 (268)
Q Consensus 82 d~fGVGT~Lvt~~~~p~l~~vyKLv 106 (268)
|+|||||+|+|+.++|++++|||||
T Consensus 303 d~fGvGt~L~~~~~~~~l~~v~Klv 327 (327)
T cd01570 303 DAFGVGTRLVTSQSQPALGGVYKLV 327 (327)
T ss_pred EEEecCccccCCCCCcccCeeEecC
Confidence 9999999999999999999999997
No 15
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=99.89 E-value=4.6e-23 Score=196.33 Aligned_cols=102 Identities=23% Similarity=0.330 Sum_probs=94.5
Q ss_pred CchHHHHHHHHHHhhcCCCccEEeeCC-CCh---------------------HHHHHHHHHHHHHHhHhhCCCCCCCeEE
Q 024420 3 SGVPNFCAVALALNDLGYKAVGIRLDS-GDL---------------------AYLSCEARKFFRTIEKEFGVPDFEKMSI 60 (268)
Q Consensus 3 sGv~nai~Va~~L~~~G~~l~GVRlDS-GDl---------------------~~ls~~~R~~ld~~~~~l~~~G~~~vkI 60 (268)
..+.+|+++|++| |.++.|||||| ||+ .++++++|+.||++ |+++++|
T Consensus 214 d~~~~al~~a~~~---g~~l~gVRlDs~gdl~DK~~~~~~~~~~~~~~~G~~~~l~~~vr~~Ld~~-------g~~~vkI 283 (352)
T PRK07188 214 DVITDSLKVAREF---GDKLKGVRVDTSKNMIDKYFIRHPEVLGTFDPRGVNPELIKALRKALDEN-------GGKHVKI 283 (352)
T ss_pred ccHHHHHHHHHHh---CCCccEEEeCCcchHhhhhcccccccccccccccccHHHHHHHHHHHhhC-------CCCCcEE
Confidence 3678999999876 88999999999 575 89999999999997 9999999
Q ss_pred EEeCCCCHHHHHHHhhcCCcccEEeecCcccccCCCCccceEEEEeEECCccccccCC
Q 024420 61 TASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSE 118 (268)
Q Consensus 61 i~S~~Lde~~I~~l~~~g~~id~fGVGT~Lvt~~~~p~l~~vyKLve~~g~P~~K~S~ 118 (268)
++||||||+.|++|.++|+|||+|||||+|+|+. .+++.|+|++||+|++|+..
T Consensus 284 ~aSgGine~~I~~~~~~g~piD~~GVGt~l~~~~----~~~t~d~v~~~g~p~aK~Gr 337 (352)
T PRK07188 284 IVSSGFDAKKIREFEAQNVPVDIYGVGSSLLKIN----IGFTGDAVELNGKKEAKAGR 337 (352)
T ss_pred EEeCCCCHHHHHHHHHcCCCccEEecCcccccCc----ccceeeEEEECCEeecccCC
Confidence 9999999999999999999999999999999975 78888999999999999975
No 16
>cd01567 NAPRTase_PncB Nicotinate phosphoribosyltransferase (NAPRTase) family. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=99.83 E-value=2.1e-20 Score=176.29 Aligned_cols=93 Identities=40% Similarity=0.559 Sum_probs=87.2
Q ss_pred chHHHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCC--CCeEEEEeCCCC-HHHHHHHhhcCC-
Q 024420 4 GVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDF--EKMSITASNDLN-EETLDALNKQGH- 79 (268)
Q Consensus 4 Gv~nai~Va~~L~~~G~~l~GVRlDSGDl~~ls~~~R~~ld~~~~~l~~~G~--~~vkIi~S~~Ld-e~~I~~l~~~g~- 79 (268)
|+.+++++++++.+ +..+.|||+|||||.++++++|++||++ |+ ++++|++|||+| |+.|+.++.++.
T Consensus 247 ~~~~~~~~~~~~~~-~~~~~gvR~DSGd~~~~~~~~~~~l~~~-------g~~~~~~~ii~sg~l~~~~~i~~~~~~~~~ 318 (343)
T cd01567 247 GFLNALKLAKALGA-GGGLLGVRLDSGDPVELIKKVRKHLDEL-------GIDLNKKKIIISGDLDTEEAIELLLEQGAS 318 (343)
T ss_pred HHHHHHHHHHhhcc-cCCCcEEECCCCCHHHHHHHHHHHHHHc-------CCCCCCeEEEEECCCCHHHHHHHHHHcCCC
Confidence 78999999999866 5678899999999999999999999997 76 889999999999 999999998887
Q ss_pred cccEEeecCcccccCCCCccceEEE
Q 024420 80 EVDAFGIGTYLVTCYAQAALGCVFK 104 (268)
Q Consensus 80 ~id~fGVGT~Lvt~~~~p~l~~vyK 104 (268)
++|+|||||+|+|+.++|++++|||
T Consensus 319 ~~~~fGvGt~l~~~~~~~~l~~v~K 343 (343)
T cd01567 319 PNDAFGVGTSLTNDLGRPPLGFVYK 343 (343)
T ss_pred cCcEEeeCcccccCCCCCccCeeeC
Confidence 9999999999999999999999998
No 17
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=99.73 E-value=2.3e-17 Score=156.81 Aligned_cols=113 Identities=27% Similarity=0.382 Sum_probs=99.8
Q ss_pred chHHHHHHHHHHhhcCCCccEEeeCC-----CChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcC
Q 024420 4 GVPNFCAVALALNDLGYKAVGIRLDS-----GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQG 78 (268)
Q Consensus 4 Gv~nai~Va~~L~~~G~~l~GVRlDS-----GDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g 78 (268)
.+..|++++.+ .|+.+.+||+|| ||+.++++++|+.||+. |+++++|.+|||+|++.|.++...
T Consensus 213 ~~~~Al~~~~~---~~~~~d~I~LDn~~~~~g~l~~~v~~vr~~ld~~-------g~~~v~IeaSGgI~~~ni~~ya~~- 281 (343)
T PRK08662 213 EREEALRAAEA---LGDRLDGVRLDTPSSRRGNFRKIVREVRWTLDIR-------GYEHVKIFVSGGLDPERIRELRDV- 281 (343)
T ss_pred cHHHHHHHHHH---hCCcCCEEEcCCCCCCCccHHHHHHHHHHHHHhc-------CCCCeEEEEeCCCCHHHHHHHHHh-
Confidence 45677777765 367889999999 99999999999999986 788899999999999999999875
Q ss_pred CcccEEeecCcccccCCCCccceEEEEeEECCccccccCCCCCCCCCCccceee
Q 024420 79 HEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRSY 132 (268)
Q Consensus 79 ~~id~fGVGT~Lvt~~~~p~l~~vyKLve~~g~P~~K~S~~~~K~t~PG~K~vy 132 (268)
+|+|||||.+.+ .|++++++|+|++||+|++|+|+.+||..+|-.+++-
T Consensus 282 --vD~isvGs~~~~---a~~lDis~~iv~~~g~~~~K~~~~~g~~~~~~~~~~~ 330 (343)
T PRK08662 282 --VDGFGVGTYISF---APPVDFSMDIVEVEGKPIAKRGKLPGIKQVPRLKEIR 330 (343)
T ss_pred --CCEEEcCccccC---CCccceEEEEEEECCeeeEeecCCcccccCCCHHHHH
Confidence 999999999976 6999999999999999999999877777777766654
No 18
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=99.64 E-value=2.1e-15 Score=141.13 Aligned_cols=99 Identities=34% Similarity=0.494 Sum_probs=90.2
Q ss_pred chHHHHHHHHHHhhcCCCccEEeeCC-----CChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcC
Q 024420 4 GVPNFCAVALALNDLGYKAVGIRLDS-----GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQG 78 (268)
Q Consensus 4 Gv~nai~Va~~L~~~G~~l~GVRlDS-----GDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g 78 (268)
.+++|+++++++ +.++.+||+|| ||+.++.+++|+.|++. |+++++|.+|||+|++.|.++...|
T Consensus 197 ~v~eal~~~~~~---~~~~d~I~lDn~~~~~G~~~~~~~~~~~~l~~~-------g~~~~~ieaSGgI~~~~i~~~a~~g 266 (302)
T cd01571 197 EKEEALKAAKAL---GDKLDGVRLDTPSSRRGVFRYLIREVRWALDIR-------GYKHVKIFVSGGLDEEDIKELEDVG 266 (302)
T ss_pred chHHHHHHHHHh---CCCCcEEEECCCCCCCCCHHHHHHHHHHHHHhC-------CCCCeEEEEeCCCCHHHHHHHHHcC
Confidence 577888888653 56789999999 99999999999999996 7788999999999999999999988
Q ss_pred CcccEEeecCcccccCCCCccceEEEEeEECCccccccC
Q 024420 79 HEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLS 117 (268)
Q Consensus 79 ~~id~fGVGT~Lvt~~~~p~l~~vyKLve~~g~P~~K~S 117 (268)
+|.||||+.+.+ +|++++++|+++++|+|++|++
T Consensus 267 --vD~isvGs~~~~---~~~~D~s~~iv~~~g~~~~K~g 300 (302)
T cd01571 267 --VDAFGVGTAISK---APPVDFTMDIVEVNGQPIAKRG 300 (302)
T ss_pred --CCEEECCcccCC---CCCCCEEEEEEEECCeeeeccC
Confidence 999999999865 7899999999999999999995
No 19
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=99.22 E-value=3.8e-11 Score=109.82 Aligned_cols=83 Identities=41% Similarity=0.568 Sum_probs=70.6
Q ss_pred hHHHHHHHHHHhhcCCCccEEeeCCC-----ChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcCC
Q 024420 5 VPNFCAVALALNDLGYKAVGIRLDSG-----DLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGH 79 (268)
Q Consensus 5 v~nai~Va~~L~~~G~~l~GVRlDSG-----Dl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g~ 79 (268)
+.++++++.+ | ++.+||+||| +++....+.+++||.. |+++++|++|||+|++.|.++...|
T Consensus 194 ~~~~~~~~~~----~-~~d~irlDs~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~i~~Sggi~~~~i~~~~~~g- 260 (281)
T cd00516 194 LEEALEAAKA----G-GADGIRLDSGSPEELDPAVLILKARAHLDGK-------GLPRVKIEASGGLDEENIRAYAETG- 260 (281)
T ss_pred HHHHHHHHhc----C-CCCEEEeCCCChHHHHHHHHHHHHHHhhhhc-------CCCceEEEEeCCCCHHHHHHHHHcC-
Confidence 4455555532 2 5789999999 8888888888888864 8999999999999999999999888
Q ss_pred cccEEeecCcccccCCCCccceEEE
Q 024420 80 EVDAFGIGTYLVTCYAQAALGCVFK 104 (268)
Q Consensus 80 ~id~fGVGT~Lvt~~~~p~l~~vyK 104 (268)
+|+|||||.+.+. |++++++|
T Consensus 261 -vd~~gvG~~~~~~---~~~di~~k 281 (281)
T cd00516 261 -VDVFGVGTLLHSA---PPLDIVLK 281 (281)
T ss_pred -CCEEEeCcccccC---cccCeEeC
Confidence 9999999999884 89999987
No 20
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=97.76 E-value=4.8e-05 Score=66.24 Aligned_cols=70 Identities=26% Similarity=0.288 Sum_probs=51.1
Q ss_pred CccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccCCCCccc
Q 024420 21 KAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALG 100 (268)
Q Consensus 21 ~l~GVRlDSGDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g~~id~fGVGT~Lvt~~~~p~l~ 100 (268)
.+.+||+|..++..+ +++.+.+++. ..+++|.+|||+|++.|.++.+.| +|.+++|+-..+ .|++|
T Consensus 100 g~d~I~lD~~~~~~~-~~~v~~l~~~--------~~~v~ie~SGGI~~~ni~~ya~~g--vD~isvg~~~~~---a~~~D 165 (169)
T PF01729_consen 100 GADIIMLDNMSPEDL-KEAVEELREL--------NPRVKIEASGGITLENIAEYAKTG--VDVISVGSLTHS---APPLD 165 (169)
T ss_dssp T-SEEEEES-CHHHH-HHHHHHHHHH--------TTTSEEEEESSSSTTTHHHHHHTT---SEEEECHHHHS---BE---
T ss_pred CCCEEEecCcCHHHH-HHHHHHHhhc--------CCcEEEEEECCCCHHHHHHHHhcC--CCEEEcChhhcC---CcccC
Confidence 478999999998544 5555556664 345999999999999999999887 899999986654 67888
Q ss_pred eEEE
Q 024420 101 CVFK 104 (268)
Q Consensus 101 ~vyK 104 (268)
|.+|
T Consensus 166 ~sl~ 169 (169)
T PF01729_consen 166 FSLD 169 (169)
T ss_dssp EEEE
T ss_pred cCcC
Confidence 8775
No 21
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.77 E-value=0.011 Score=55.52 Aligned_cols=74 Identities=19% Similarity=0.279 Sum_probs=58.2
Q ss_pred CccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCC-CCeEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccCCCCcc
Q 024420 21 KAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDF-EKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAAL 99 (268)
Q Consensus 21 ~l~GVRlDSGDl~~ls~~~R~~ld~~~~~l~~~G~-~~vkIi~S~~Lde~~I~~l~~~g~~id~fGVGT~Lvt~~~~p~l 99 (268)
....|++|..++..+ +++.+.+++. |+ ++++|.+|||+|++.|.++.+.| +|.+.+|. ++++ .|++
T Consensus 202 gaDiI~LDn~~~e~l-~~~v~~l~~~-------~~~~~~~leaSGGI~~~ni~~yA~tG--vD~Is~ga-lt~s--a~~~ 268 (278)
T PRK08385 202 GADIIMLDNMTPEEI-REVIEALKRE-------GLRERVKIEVSGGITPENIEEYAKLD--VDVISLGA-LTHS--VRNF 268 (278)
T ss_pred CcCEEEECCCCHHHH-HHHHHHHHhc-------CcCCCEEEEEECCCCHHHHHHHHHcC--CCEEEeCh-hhcC--CCcc
Confidence 356999999986654 5566667665 44 47999999999999999999887 78888887 4332 7899
Q ss_pred ceEEEEeE
Q 024420 100 GCVFKLVE 107 (268)
Q Consensus 100 ~~vyKLve 107 (268)
|+.+|+++
T Consensus 269 Dis~~i~~ 276 (278)
T PRK08385 269 DVSLEILK 276 (278)
T ss_pred ceEEEEec
Confidence 99999874
No 22
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.72 E-value=0.0087 Score=55.96 Aligned_cols=70 Identities=19% Similarity=0.283 Sum_probs=56.1
Q ss_pred ccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccCCCCccce
Q 024420 22 AVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGC 101 (268)
Q Consensus 22 l~GVRlDSGDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g~~id~fGVGT~Lvt~~~~p~l~~ 101 (268)
...|.+|..++..+.+.++ ++.. +.++++|.+||++|++.+.++.+.| +|.+.+|+-. ++ .|++|+
T Consensus 203 aDiI~LDn~~~e~l~~~v~-~~~~--------~~~~~~ieAsGgIt~~ni~~ya~~G--vD~IsvG~l~-~s--a~~~D~ 268 (273)
T PRK05848 203 ADIVMCDNMSVEEIKEVVA-YRNA--------NYPHVLLEASGNITLENINAYAKSG--VDAISSGSLI-HQ--ATWIDM 268 (273)
T ss_pred CCEEEECCCCHHHHHHHHH-Hhhc--------cCCCeEEEEECCCCHHHHHHHHHcC--CCEEEeChhh-cC--CCccce
Confidence 4589999999888876665 3433 5678999999999999999999887 6888888844 32 688998
Q ss_pred EEEE
Q 024420 102 VFKL 105 (268)
Q Consensus 102 vyKL 105 (268)
.+++
T Consensus 269 sl~~ 272 (273)
T PRK05848 269 SMKM 272 (273)
T ss_pred eeec
Confidence 8775
No 23
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.11 E-value=0.024 Score=53.49 Aligned_cols=72 Identities=21% Similarity=0.150 Sum_probs=54.0
Q ss_pred CCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccCCCCc
Q 024420 19 GYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAA 98 (268)
Q Consensus 19 G~~l~GVRlDSGDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g~~id~fGVGT~Lvt~~~~p~ 98 (268)
......|++|--++..+. ++.+++++. .+++.|.+|||+|++.|.++.+.| +|.+.+|. ++++ .|+
T Consensus 217 ~~gaDiI~LDnm~~e~vk-~av~~~~~~--------~~~v~ieaSGGI~~~ni~~yA~tG--vD~Is~ga-lt~s--a~~ 282 (289)
T PRK07896 217 AEGAELVLLDNFPVWQTQ-EAVQRRDAR--------APTVLLESSGGLTLDTAAAYAETG--VDYLAVGA-LTHS--VPV 282 (289)
T ss_pred HcCCCEEEeCCCCHHHHH-HHHHHHhcc--------CCCEEEEEECCCCHHHHHHHHhcC--CCEEEeCh-hhcC--CCc
Confidence 455789999998865543 334455552 477899999999999999999887 78888887 3332 678
Q ss_pred cceEEE
Q 024420 99 LGCVFK 104 (268)
Q Consensus 99 l~~vyK 104 (268)
+|+.++
T Consensus 283 ~Disl~ 288 (289)
T PRK07896 283 LDIGLD 288 (289)
T ss_pred cccccc
Confidence 887765
No 24
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=95.53 E-value=0.08 Score=49.30 Aligned_cols=68 Identities=18% Similarity=0.116 Sum_probs=48.2
Q ss_pred cEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccCCCCccceE
Q 024420 23 VGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCV 102 (268)
Q Consensus 23 ~GVRlDSGDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g~~id~fGVGT~Lvt~~~~p~l~~v 102 (268)
..|.+|.-++..+ +++.+.+.. .++++.|++|||++++.|.++.+.| +|++ +.+++.+ ++++|+.
T Consensus 205 D~I~ld~~~p~~l-~~~~~~~~~--------~~~~i~i~AsGGI~~~ni~~~~~~G--vd~I-~vsai~~---a~~~D~s 269 (272)
T cd01573 205 DILQLDKFSPEEL-AELVPKLRS--------LAPPVLLAAAGGINIENAAAYAAAG--ADIL-VTSAPYY---AKPADIK 269 (272)
T ss_pred CEEEECCCCHHHH-HHHHHHHhc--------cCCCceEEEECCCCHHHHHHHHHcC--CcEE-EEChhhc---CcccceE
Confidence 4677776665443 233333332 3467899999999999999999887 5667 6666754 7889988
Q ss_pred EEE
Q 024420 103 FKL 105 (268)
Q Consensus 103 yKL 105 (268)
+++
T Consensus 270 ~~~ 272 (272)
T cd01573 270 VKI 272 (272)
T ss_pred EeC
Confidence 764
No 25
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=94.93 E-value=0.2 Score=47.29 Aligned_cols=73 Identities=22% Similarity=0.311 Sum_probs=54.2
Q ss_pred CCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccCCCCcc
Q 024420 20 YKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAAL 99 (268)
Q Consensus 20 ~~l~GVRlDSGDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g~~id~fGVGT~Lvt~~~~p~l 99 (268)
.....|.+|--++..+.+-+ +++++ -.+++.|.+|||+|++.|.++.+.| +|..-+|+-... .|++
T Consensus 215 ~GaD~I~LDn~~~e~l~~av-~~~~~--------~~~~i~leAsGGIt~~ni~~ya~tG--vD~Isvgsl~~s---a~~~ 280 (288)
T PRK07428 215 YGADIIMLDNMPVDLMQQAV-QLIRQ--------QNPRVKIEASGNITLETIRAVAETG--VDYISSSAPITR---SPWL 280 (288)
T ss_pred cCCCEEEECCCCHHHHHHHH-HHHHh--------cCCCeEEEEECCCCHHHHHHHHHcC--CCEEEEchhhhC---CCcc
Confidence 34567888888876554433 34444 2467899999999999999999887 677778774432 7899
Q ss_pred ceEEEEe
Q 024420 100 GCVFKLV 106 (268)
Q Consensus 100 ~~vyKLv 106 (268)
|+.++++
T Consensus 281 Dis~~i~ 287 (288)
T PRK07428 281 DLSMRIL 287 (288)
T ss_pred ceEEEec
Confidence 9998875
No 26
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=94.48 E-value=0.21 Score=47.40 Aligned_cols=67 Identities=22% Similarity=0.269 Sum_probs=50.2
Q ss_pred ccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccCCCCccce
Q 024420 22 AVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGC 101 (268)
Q Consensus 22 l~GVRlDSGDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g~~id~fGVGT~Lvt~~~~p~l~~ 101 (268)
...|.+|--++..+.+-++ .. + .++.|-+|||+|++.|.++...| +|.+.+|. |+++ .+++||
T Consensus 229 aDiI~LDn~s~e~~~~av~----~~------~--~~~~ieaSGGI~~~ni~~yA~tG--VD~Is~ga-lths--a~~lD~ 291 (296)
T PRK09016 229 ADIIMLDNFTTEQMREAVK----RT------N--GRALLEVSGNVTLETLREFAETG--VDFISVGA-LTKH--VQALDL 291 (296)
T ss_pred CCEEEeCCCChHHHHHHHH----hh------c--CCeEEEEECCCCHHHHHHHHhcC--CCEEEeCc-cccC--CCccce
Confidence 5789999999755543333 21 1 37899999999999999999887 67777776 5443 678999
Q ss_pred EEEE
Q 024420 102 VFKL 105 (268)
Q Consensus 102 vyKL 105 (268)
.+++
T Consensus 292 sl~~ 295 (296)
T PRK09016 292 SMRF 295 (296)
T ss_pred eeec
Confidence 8875
No 27
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=93.97 E-value=0.27 Score=46.35 Aligned_cols=69 Identities=20% Similarity=0.216 Sum_probs=49.6
Q ss_pred CCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccCCCCcc
Q 024420 20 YKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAAL 99 (268)
Q Consensus 20 ~~l~GVRlDSGDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g~~id~fGVGT~Lvt~~~~p~l 99 (268)
.....|.+|-.++..+...+. ++. ....|-+|||+|++.|.++.+.| +|.+.+|. ++++ .|++
T Consensus 213 ~gaDiI~LDn~s~e~l~~av~-~~~-----------~~~~leaSGGI~~~ni~~yA~tG--VD~Is~Ga-lths--a~~~ 275 (281)
T PRK06106 213 LGVDAVLLDNMTPDTLREAVA-IVA-----------GRAITEASGRITPETAPAIAASG--VDLISVGW-LTHS--APVL 275 (281)
T ss_pred cCCCEEEeCCCCHHHHHHHHH-HhC-----------CCceEEEECCCCHHHHHHHHhcC--CCEEEeCh-hhcC--CCcc
Confidence 446789999999765543333 221 22359999999999999999887 67777776 4443 6788
Q ss_pred ceEEEE
Q 024420 100 GCVFKL 105 (268)
Q Consensus 100 ~~vyKL 105 (268)
|+.+|+
T Consensus 276 Disl~~ 281 (281)
T PRK06106 276 DIGLDF 281 (281)
T ss_pred ccccCC
Confidence 887653
No 28
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=93.81 E-value=0.45 Score=44.70 Aligned_cols=46 Identities=28% Similarity=0.447 Sum_probs=37.9
Q ss_pred CCeEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccCCCCccceEEEEe
Q 024420 56 EKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLV 106 (268)
Q Consensus 56 ~~vkIi~S~~Lde~~I~~l~~~g~~id~fGVGT~Lvt~~~~p~l~~vyKLv 106 (268)
.++.|++|||++++.+.++.+.| +|.+.+|. ++++ .|++||.++++
T Consensus 232 ~~i~leAsGGIt~~ni~~~a~tG--vD~Isvg~-lt~s--~~~~D~sl~~~ 277 (277)
T PRK05742 232 GRAKLEASGGINESTLRVIAETG--VDYISIGA-MTKD--VKAVDLSMRLS 277 (277)
T ss_pred CCCcEEEECCCCHHHHHHHHHcC--CCEEEECh-hhcC--CcccceeeecC
Confidence 36899999999999999999877 67777887 4443 78999998864
No 29
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=92.65 E-value=0.49 Score=43.96 Aligned_cols=43 Identities=23% Similarity=0.350 Sum_probs=35.8
Q ss_pred eEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccCCCCccceEEEE
Q 024420 58 MSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKL 105 (268)
Q Consensus 58 vkIi~S~~Lde~~I~~l~~~g~~id~fGVGT~Lvt~~~~p~l~~vyKL 105 (268)
+.|++|||++++.+.++.+.| +|.+.| +.++++ .|++|+.+++
T Consensus 223 ipi~AsGGI~~~ni~~~a~~G--vd~Isv-gait~s--a~~~D~sl~i 265 (265)
T TIGR00078 223 VLLEASGGITLDNLEEYAETG--VDVISS-GALTHS--VPALDFSLKI 265 (265)
T ss_pred CcEEEECCCCHHHHHHHHHcC--CCEEEe-CHHHcC--CCccceeeeC
Confidence 689999999999999999887 688888 566664 6788887763
No 30
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=91.66 E-value=0.65 Score=40.39 Aligned_cols=74 Identities=20% Similarity=0.252 Sum_probs=49.5
Q ss_pred chHHHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcCCcccE
Q 024420 4 GVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDA 83 (268)
Q Consensus 4 Gv~nai~Va~~L~~~G~~l~GVRlDSGDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g~~id~ 83 (268)
|+.+.-++.+++ +.|.+..++ +..++. ..+..+.+.. .++++.++++||++++.+.++.+.| +++
T Consensus 103 gv~t~~e~~~A~-~~Gad~i~~--~p~~~~--g~~~~~~l~~--------~~~~~p~~a~GGI~~~n~~~~~~~G--~~~ 167 (190)
T cd00452 103 GVATPTEIMQAL-ELGADIVKL--FPAEAV--GPAYIKALKG--------PFPQVRFMPTGGVSLDNAAEWLAAG--VVA 167 (190)
T ss_pred CcCCHHHHHHHH-HCCCCEEEE--cCCccc--CHHHHHHHHh--------hCCCCeEEEeCCCCHHHHHHHHHCC--CEE
Confidence 344444444443 467777666 444432 2222333333 4567899999999999999999988 889
Q ss_pred EeecCcccc
Q 024420 84 FGIGTYLVT 92 (268)
Q Consensus 84 fGVGT~Lvt 92 (268)
.++|+.+.+
T Consensus 168 v~v~s~i~~ 176 (190)
T cd00452 168 VGGGSLLPK 176 (190)
T ss_pred EEEchhcch
Confidence 999998863
No 31
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=91.17 E-value=0.91 Score=42.14 Aligned_cols=67 Identities=28% Similarity=0.325 Sum_probs=44.8
Q ss_pred ccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccCCCCccce
Q 024420 22 AVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGC 101 (268)
Q Consensus 22 l~GVRlDSGDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g~~id~fGVGT~Lvt~~~~p~l~~ 101 (268)
...|.+|.-.+..+ +++.+.+.+ ..++.|++|||++++.|.++.+.| +|++.+| +++++ .|++|+
T Consensus 202 aD~I~ld~~~~e~l-~~~v~~i~~---------~~~i~i~asGGIt~~ni~~~a~~G--ad~Isvg-al~~s--~~~~D~ 266 (269)
T cd01568 202 ADIIMLDNMSPEEL-KEAVKLLKG---------LPRVLLEASGGITLENIRAYAETG--VDVISTG-ALTHS--APALDI 266 (269)
T ss_pred CCEEEECCCCHHHH-HHHHHHhcc---------CCCeEEEEECCCCHHHHHHHHHcC--CCEEEEc-HHHcC--CCccCc
Confidence 45677777665333 222333322 257899999999999999999988 5677775 55553 456776
Q ss_pred EE
Q 024420 102 VF 103 (268)
Q Consensus 102 vy 103 (268)
.+
T Consensus 267 sl 268 (269)
T cd01568 267 SL 268 (269)
T ss_pred cc
Confidence 54
No 32
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=90.62 E-value=0.97 Score=40.72 Aligned_cols=73 Identities=19% Similarity=0.316 Sum_probs=50.2
Q ss_pred chHHHHHHHHHHhhcCCCccEEee-CCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcCCccc
Q 024420 4 GVPNFCAVALALNDLGYKAVGIRL-DSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVD 82 (268)
Q Consensus 4 Gv~nai~Va~~L~~~G~~l~GVRl-DSGDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g~~id 82 (268)
|+-+.-++..++ +.|.+..++-+ +...+.++ +.|.. .|+++.++++||++++.+.++.+.| .+
T Consensus 115 G~~T~~E~~~A~-~~Gad~vklFPa~~~G~~~i-----k~l~~--------~~p~ip~~atGGI~~~N~~~~l~aG--a~ 178 (213)
T PRK06552 115 GCMTVTEIVTAL-EAGSEIVKLFPGSTLGPSFI-----KAIKG--------PLPQVNVMVTGGVNLDNVKDWFAAG--AD 178 (213)
T ss_pred CcCCHHHHHHHH-HcCCCEEEECCcccCCHHHH-----HHHhh--------hCCCCEEEEECCCCHHHHHHHHHCC--Cc
Confidence 333444444443 56888777754 33233332 22222 5788999999999999999999876 78
Q ss_pred EEeecCcccc
Q 024420 83 AFGIGTYLVT 92 (268)
Q Consensus 83 ~fGVGT~Lvt 92 (268)
++|+|+.|..
T Consensus 179 ~vavgs~l~~ 188 (213)
T PRK06552 179 AVGIGGELNK 188 (213)
T ss_pred EEEEchHHhC
Confidence 9999999964
No 33
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=90.58 E-value=1.6 Score=36.40 Aligned_cols=68 Identities=19% Similarity=0.275 Sum_probs=50.3
Q ss_pred hcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccc
Q 024420 17 DLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (268)
Q Consensus 17 ~~G~~l~GVRlDSGDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g~~id~fGVGT~Lvt 92 (268)
+.+.+..|+=-=.++-..+.+++.+.|++. |.++++|++.|.+-.+..++|.+.|. -..|+.||++..
T Consensus 51 e~~adii~iSsl~~~~~~~~~~~~~~L~~~-------g~~~i~vivGG~~~~~~~~~l~~~Gv-d~~~~~gt~~~~ 118 (132)
T TIGR00640 51 EADVHVVGVSSLAGGHLTLVPALRKELDKL-------GRPDILVVVGGVIPPQDFDELKEMGV-AEIFGPGTPIPE 118 (132)
T ss_pred HcCCCEEEEcCchhhhHHHHHHHHHHHHhc-------CCCCCEEEEeCCCChHhHHHHHHCCC-CEEECCCCCHHH
Confidence 335555555333344556677777778775 77789999999898888999999886 568999998865
No 34
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=87.68 E-value=2.5 Score=39.33 Aligned_cols=43 Identities=26% Similarity=0.431 Sum_probs=34.0
Q ss_pred CeEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccCCCCccceEEE
Q 024420 57 KMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFK 104 (268)
Q Consensus 57 ~vkIi~S~~Lde~~I~~l~~~g~~id~fGVGT~Lvt~~~~p~l~~vyK 104 (268)
++.|++|||++++.|.++.+.| +|++.||+ ++++ .|++|+.++
T Consensus 226 ~ipi~AiGGI~~~ni~~~a~~G--vd~Iav~s-l~~~--a~~~D~sl~ 268 (268)
T cd01572 226 RVLLEASGGITLENIRAYAETG--VDYISVGA-LTHS--APALDISLD 268 (268)
T ss_pred CCcEEEECCCCHHHHHHHHHcC--CCEEEEEe-eecC--CCccCccCC
Confidence 5789999999999999999887 67777776 4442 567777653
No 35
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=87.53 E-value=3.2 Score=39.51 Aligned_cols=69 Identities=22% Similarity=0.263 Sum_probs=48.9
Q ss_pred ccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccCCCCccce
Q 024420 22 AVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGC 101 (268)
Q Consensus 22 l~GVRlDSGDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g~~id~fGVGT~Lvt~~~~p~l~~ 101 (268)
...|-+|-.++..+.+-+. ++ + .++.|-+|||++++.|.++...|..+.+-|- |+++ .|++|+
T Consensus 226 aDiImLDnmspe~l~~av~-~~---------~--~~~~lEaSGGIt~~ni~~yA~tGVD~IS~ga---lths--a~~lD~ 288 (294)
T PRK06978 226 AQSVLLDNFTLDMMREAVR-VT---------A--GRAVLEVSGGVNFDTVRAFAETGVDRISIGA---LTKD--VRATDY 288 (294)
T ss_pred CCEEEECCCCHHHHHHHHH-hh---------c--CCeEEEEECCCCHHHHHHHHhcCCCEEEeCc---cccC--Ccccce
Confidence 4577788777665544332 22 1 2679999999999999999998866555443 5544 689999
Q ss_pred EEEEeE
Q 024420 102 VFKLVE 107 (268)
Q Consensus 102 vyKLve 107 (268)
.+++.+
T Consensus 289 sl~~~~ 294 (294)
T PRK06978 289 SMRIVE 294 (294)
T ss_pred EEeccC
Confidence 988753
No 36
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=87.39 E-value=4.3 Score=32.82 Aligned_cols=66 Identities=20% Similarity=0.293 Sum_probs=46.2
Q ss_pred CCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccc
Q 024420 19 GYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (268)
Q Consensus 19 G~~l~GVRlDSGDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g~~id~fGVGT~Lvt 92 (268)
+.+..++=.-.+......+++.+.|.+. |+++++|++.|..-.+.++++.+.|. -..|+.||..-+
T Consensus 50 ~~d~V~iS~~~~~~~~~~~~~~~~L~~~-------~~~~i~i~~GG~~~~~~~~~~~~~G~-d~~~~~~~~~~~ 115 (122)
T cd02071 50 DVDVIGLSSLSGGHMTLFPEVIELLREL-------GAGDILVVGGGIIPPEDYELLKEMGV-AEIFGPGTSIEE 115 (122)
T ss_pred CCCEEEEcccchhhHHHHHHHHHHHHhc-------CCCCCEEEEECCCCHHHHHHHHHCCC-CEEECCCCCHHH
Confidence 4445555333344455556666666665 77899999999988888999999983 457888887643
No 37
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=86.64 E-value=5.8 Score=37.53 Aligned_cols=72 Identities=14% Similarity=0.105 Sum_probs=50.3
Q ss_pred ccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccCCCCccce
Q 024420 22 AVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGC 101 (268)
Q Consensus 22 l~GVRlDSGDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g~~id~fGVGT~Lvt~~~~p~l~~ 101 (268)
...|-+|--++..+.+ +.+++++. .+++.|-+|||+|++.|.++...| +|.+ +-+.|.+ .|++|+
T Consensus 210 aDiI~LDn~~~e~l~~-av~~~~~~--------~~~~~leaSGGI~~~ni~~yA~tG--vD~I-s~gal~~---a~~~Di 274 (284)
T PRK06096 210 PDVLQLDKFSPQQATE-IAQIAPSL--------APHCTLSLAGGINLNTLKNYADCG--IRLF-ITSAPYY---AAPADI 274 (284)
T ss_pred CCEEEECCCCHHHHHH-HHHHhhcc--------CCCeEEEEECCCCHHHHHHHHhcC--CCEE-EECcccc---CCCcCe
Confidence 4567777777665543 33444431 256899999999999999999888 5555 4445644 389999
Q ss_pred EEEEeEE
Q 024420 102 VFKLVEI 108 (268)
Q Consensus 102 vyKLve~ 108 (268)
.+++...
T Consensus 275 sl~i~~~ 281 (284)
T PRK06096 275 KVSLQPA 281 (284)
T ss_pred EEEEEec
Confidence 9988543
No 38
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=86.41 E-value=1.8 Score=42.02 Aligned_cols=129 Identities=20% Similarity=0.212 Sum_probs=88.0
Q ss_pred HHHHHHHhhcCCCccEEeeCC--CChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcCCcccEEee
Q 024420 9 CAVALALNDLGYKAVGIRLDS--GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGI 86 (268)
Q Consensus 9 i~Va~~L~~~G~~l~GVRlDS--GDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g~~id~fGV 86 (268)
.+-+.+|-+....+..|=+|| |. |..+.+++.+... -|+++.|++.|=.+.+..++|.+.|+...--||
T Consensus 110 ~er~~~L~~~~~g~D~iviD~AhGh----s~~~i~~ik~ik~-----~~P~~~vIaGNV~T~e~a~~Li~aGAD~vKVGI 180 (346)
T PRK05096 110 FEKTKQILALSPALNFICIDVANGY----SEHFVQFVAKARE-----AWPDKTICAGNVVTGEMVEELILSGADIVKVGI 180 (346)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCc----HHHHHHHHHHHHH-----hCCCCcEEEecccCHHHHHHHHHcCCCEEEEcc
Confidence 344556666433456688888 55 3333333333322 267889999999999999999999998877888
Q ss_pred c------CcccccCCCCccceEEEEeEEC---CccccccCCCCCCCCCCc--cceeeeeccCCCCeeeeEEecCCCC
Q 024420 87 G------TYLVTCYAQAALGCVFKLVEIN---KQPRIKLSEDVSKVSIPC--KKRSYRLYGKEGYPLVDIMTGENEP 152 (268)
Q Consensus 87 G------T~Lvt~~~~p~l~~vyKLve~~---g~P~~K~S~~~~K~t~PG--~K~vyR~~~~~g~~~~D~i~l~~e~ 152 (268)
| |++++..+.|-+..||++.+.. |.|++ +| |-...+| .|.+. .+++--++..+++..+|.
T Consensus 181 GpGSiCtTr~vtGvG~PQltAV~~~a~~a~~~gvpiI--AD--GGi~~sGDI~KAla--aGAd~VMlGsllAGt~Es 251 (346)
T PRK05096 181 GPGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGQIV--SD--GGCTVPGDVAKAFG--GGADFVMLGGMLAGHEES 251 (346)
T ss_pred cCCccccCccccccChhHHHHHHHHHHHHHHcCCCEE--ec--CCcccccHHHHHHH--cCCCEEEeChhhcCcccC
Confidence 8 7888888899999999988763 45665 44 5455556 34432 244555666677777764
No 39
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=86.32 E-value=1.8 Score=39.52 Aligned_cols=61 Identities=18% Similarity=0.298 Sum_probs=44.8
Q ss_pred hcCCCccEEee-CCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCH--HHHHHHhhcCCcccEEeecCcccc
Q 024420 17 DLGYKAVGIRL-DSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNE--ETLDALNKQGHEVDAFGIGTYLVT 92 (268)
Q Consensus 17 ~~G~~l~GVRl-DSGDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde--~~I~~l~~~g~~id~fGVGT~Lvt 92 (268)
+.|.++.=+=+ +++.+.|+. .|.. .|++++++.+||+++ +.+.++++.| ..++|+|+.|+.
T Consensus 130 ~~Ga~~vKlFPA~~~G~~~ik-----al~~--------p~p~i~~~ptGGV~~~~~n~~~yl~aG--a~avg~Gs~L~~ 193 (222)
T PRK07114 130 ELGCEIVKLFPGSVYGPGFVK-----AIKG--------PMPWTKIMPTGGVEPTEENLKKWFGAG--VTCVGMGSKLIP 193 (222)
T ss_pred HCCCCEEEECcccccCHHHHH-----HHhc--------cCCCCeEEeCCCCCcchhcHHHHHhCC--CEEEEEChhhcC
Confidence 45665433333 455555542 3332 699999999999998 8999999876 789999999985
No 40
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=86.09 E-value=2.8 Score=36.76 Aligned_cols=71 Identities=14% Similarity=0.153 Sum_probs=46.6
Q ss_pred HHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcCCcccEEeec
Q 024420 8 FCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIG 87 (268)
Q Consensus 8 ai~Va~~L~~~G~~l~GVRlDSGDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g~~id~fGVG 87 (268)
.-++..++ +.|.+..++.+ +..+ .....-+.+.. .++++.+++.||++.+.+.++.+.| .++.|||
T Consensus 115 ~~e~~~A~-~~Gadyv~~Fp-t~~~--~G~~~l~~~~~--------~~~~ipvvaiGGI~~~n~~~~l~aG--a~~vav~ 180 (187)
T PRK07455 115 PTEIVTAW-QAGASCVKVFP-VQAV--GGADYIKSLQG--------PLGHIPLIPTGGVTLENAQAFIQAG--AIAVGLS 180 (187)
T ss_pred HHHHHHHH-HCCCCEEEECc-CCcc--cCHHHHHHHHh--------hCCCCcEEEeCCCCHHHHHHHHHCC--CeEEEEe
Confidence 33444433 46888888866 3221 00111112222 3567899999999999999999876 7899999
Q ss_pred Ccccc
Q 024420 88 TYLVT 92 (268)
Q Consensus 88 T~Lvt 92 (268)
+.|..
T Consensus 181 s~i~~ 185 (187)
T PRK07455 181 GQLFP 185 (187)
T ss_pred hhccc
Confidence 99865
No 41
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=85.18 E-value=1.1 Score=40.23 Aligned_cols=37 Identities=19% Similarity=0.273 Sum_probs=34.1
Q ss_pred CCCCeEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccc
Q 024420 54 DFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (268)
Q Consensus 54 G~~~vkIi~S~~Lde~~I~~l~~~g~~id~fGVGT~Lvt 92 (268)
.|++++++.+||++.+.+.++++.| ...+|+|+.|+.
T Consensus 145 plp~i~~~ptGGV~~~N~~~~l~aG--a~~vg~Gs~L~~ 181 (204)
T TIGR01182 145 PFPQVRFCPTGGINLANVRDYLAAP--NVACGGGSWLVP 181 (204)
T ss_pred cCCCCcEEecCCCCHHHHHHHHhCC--CEEEEEChhhcC
Confidence 6899999999999999999999877 678999999986
No 42
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=84.66 E-value=5.8 Score=34.09 Aligned_cols=68 Identities=16% Similarity=0.196 Sum_probs=57.1
Q ss_pred hcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccc
Q 024420 17 DLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (268)
Q Consensus 17 ~~G~~l~GVRlDSGDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g~~id~fGVGT~Lvt 92 (268)
+......||=.=+|.=..+..++++.|.++ |..++.+++.|-+-...+.+|.+.|. --.|+.||.+..
T Consensus 61 ~~dv~vIgvSsl~g~h~~l~~~lve~lre~-------G~~~i~v~~GGvip~~d~~~l~~~G~-~~if~pgt~~~~ 128 (143)
T COG2185 61 EEDVDVIGVSSLDGGHLTLVPGLVEALREA-------GVEDILVVVGGVIPPGDYQELKEMGV-DRIFGPGTPIEE 128 (143)
T ss_pred hcCCCEEEEEeccchHHHHHHHHHHHHHHh-------CCcceEEeecCccCchhHHHHHHhCc-ceeeCCCCCHHH
Confidence 334556677777787788999999999998 89998899999999999999999885 448999999865
No 43
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=84.50 E-value=3.4 Score=37.24 Aligned_cols=63 Identities=13% Similarity=0.144 Sum_probs=44.2
Q ss_pred HhhcCCCccEEeeCC--CChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccc
Q 024420 15 LNDLGYKAVGIRLDS--GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (268)
Q Consensus 15 L~~~G~~l~GVRlDS--GDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g~~id~fGVGT~Lvt 92 (268)
..+.|.++.-+.+=+ |.+.++ +.|.. .|++++++.+||++++.+.++.+.| ....|.|+.|+.
T Consensus 124 a~~~Ga~~vKlFPa~~~gg~~~l-----k~l~~--------p~p~~~~~ptGGV~~~ni~~~l~ag--~v~~vggs~L~~ 188 (212)
T PRK05718 124 GMELGLRTFKFFPAEASGGVKML-----KALAG--------PFPDVRFCPTGGISPANYRDYLALP--NVLCIGGSWMVP 188 (212)
T ss_pred HHHCCCCEEEEccchhccCHHHH-----HHHhc--------cCCCCeEEEeCCCCHHHHHHHHhCC--CEEEEEChHhCC
Confidence 346688877775522 344433 23332 5889999999999999999999988 344455888865
No 44
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=84.26 E-value=2.3 Score=36.51 Aligned_cols=37 Identities=16% Similarity=0.306 Sum_probs=32.1
Q ss_pred CCeEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccC
Q 024420 56 EKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCY 94 (268)
Q Consensus 56 ~~vkIi~S~~Lde~~I~~l~~~g~~id~fGVGT~Lvt~~ 94 (268)
.++.|+++||++++.+.++.+.| .|++++|+.++...
T Consensus 157 ~~~~i~~~GGI~~~~i~~~~~~G--ad~vvvGsai~~~~ 193 (202)
T cd04726 157 LGVKVAVAGGITPDTLPEFKKAG--ADIVIVGRAITGAA 193 (202)
T ss_pred cCCCEEEECCcCHHHHHHHHhcC--CCEEEEeehhcCCC
Confidence 45789999999999999999877 67999999997643
No 45
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=83.38 E-value=2.6 Score=42.52 Aligned_cols=131 Identities=17% Similarity=0.178 Sum_probs=91.2
Q ss_pred HHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcCCcccEEee
Q 024420 7 NFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGI 86 (268)
Q Consensus 7 nai~Va~~L~~~G~~l~GVRlDSGDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g~~id~fGV 86 (268)
...+.+..|.+.|.+. |=+|+-.=- +..+.+++.+... -++++.|++.|=-+.+..+.+.+.|+.....||
T Consensus 227 ~~~~~a~~Lv~aGvd~--i~~D~a~~~--~~~~~~~i~~ik~-----~~p~~~v~agnv~t~~~a~~l~~aGad~v~vgi 297 (479)
T PRK07807 227 DVAAKARALLEAGVDV--LVVDTAHGH--QEKMLEALRAVRA-----LDPGVPIVAGNVVTAEGTRDLVEAGADIVKVGV 297 (479)
T ss_pred hHHHHHHHHHHhCCCE--EEEeccCCc--cHHHHHHHHHHHH-----HCCCCeEEeeccCCHHHHHHHHHcCCCEEEECc
Confidence 3456777787788766 667873311 3333333333322 257889999999999999999999998888888
Q ss_pred cC------cccccCCCCccceEEEEeEE---CCccccccCCCCCCCCCCc--cceeeeeccCCCCeeeeEEecCCCC
Q 024420 87 GT------YLVTCYAQAALGCVFKLVEI---NKQPRIKLSEDVSKVSIPC--KKRSYRLYGKEGYPLVDIMTGENEP 152 (268)
Q Consensus 87 GT------~Lvt~~~~p~l~~vyKLve~---~g~P~~K~S~~~~K~t~PG--~K~vyR~~~~~g~~~~D~i~l~~e~ 152 (268)
|+ +.+|....|-+..+|++.+. -|.|++ .+ |....|| .|.+. .+++.-+++-++...+|.
T Consensus 298 g~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~vi--a~--ggi~~~~~~~~al~--~ga~~v~~g~~~ag~~Es 368 (479)
T PRK07807 298 GPGAMCTTRMMTGVGRPQFSAVLECAAAARELGAHVW--AD--GGVRHPRDVALALA--AGASNVMIGSWFAGTYES 368 (479)
T ss_pred cCCcccccccccCCchhHHHHHHHHHHHHHhcCCcEE--ec--CCCCCHHHHHHHHH--cCCCeeeccHhhccCccC
Confidence 87 66777788999999999975 256776 33 6777777 23332 245556666777777774
No 46
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=83.14 E-value=9.2 Score=32.11 Aligned_cols=52 Identities=13% Similarity=0.115 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCC------HHHHHHHhhcCCcccEEeecCcccc
Q 024420 33 AYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN------EETLDALNKQGHEVDAFGIGTYLVT 92 (268)
Q Consensus 33 ~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Ld------e~~I~~l~~~g~~id~fGVGT~Lvt 92 (268)
....+++.+.|+++ |+.+++|++.|.+- ++.+.+|.+.|. --.||-||.+.+
T Consensus 64 ~~~~~~~~~~l~~~-------gl~~v~vivGG~~~i~~~d~~~~~~~L~~~Gv-~~vf~pgt~~~~ 121 (128)
T cd02072 64 EIDCKGLREKCDEA-------GLKDILLYVGGNLVVGKQDFEDVEKRFKEMGF-DRVFAPGTPPEE 121 (128)
T ss_pred HHHHHHHHHHHHHC-------CCCCCeEEEECCCCCChhhhHHHHHHHHHcCC-CEEECcCCCHHH
Confidence 35567778888886 88789999999963 455677888887 448999997754
No 47
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=82.01 E-value=3.5 Score=40.08 Aligned_cols=94 Identities=20% Similarity=0.176 Sum_probs=68.9
Q ss_pred HHHHHHHHHhhcCCCccEEeeCC--CChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcCCcccEE
Q 024420 7 NFCAVALALNDLGYKAVGIRLDS--GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAF 84 (268)
Q Consensus 7 nai~Va~~L~~~G~~l~GVRlDS--GDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g~~id~f 84 (268)
+-.+-+.+|-++|..+..|=+|| |. |..+.+.+..... -+++..|++.|=.+.+..++|.+.|+...-.
T Consensus 107 ~d~er~~~L~~a~~~~d~iviD~AhGh----s~~~i~~ik~ir~-----~~p~~~viaGNV~T~e~a~~Li~aGAD~ikV 177 (343)
T TIGR01305 107 NDLEKMTSILEAVPQLKFICLDVANGY----SEHFVEFVKLVRE-----AFPEHTIMAGNVVTGEMVEELILSGADIVKV 177 (343)
T ss_pred HHHHHHHHHHhcCCCCCEEEEECCCCc----HHHHHHHHHHHHh-----hCCCCeEEEecccCHHHHHHHHHcCCCEEEE
Confidence 34556677777776677888999 65 3333333333321 2467799999999999999999999877666
Q ss_pred e------ecCcccccCCCCccceEEEEeEEC
Q 024420 85 G------IGTYLVTCYAQAALGCVFKLVEIN 109 (268)
Q Consensus 85 G------VGT~Lvt~~~~p~l~~vyKLve~~ 109 (268)
| .+|+.++....|.+..++.+++.-
T Consensus 178 giGpGSicttR~~~Gvg~pqltAv~~~a~aa 208 (343)
T TIGR01305 178 GIGPGSVCTTRTKTGVGYPQLSAVIECADAA 208 (343)
T ss_pred cccCCCcccCceeCCCCcCHHHHHHHHHHHh
Confidence 6 447777777889999999988764
No 48
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=81.66 E-value=6.7 Score=33.97 Aligned_cols=37 Identities=16% Similarity=0.274 Sum_probs=31.4
Q ss_pred CCeEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccC
Q 024420 56 EKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCY 94 (268)
Q Consensus 56 ~~vkIi~S~~Lde~~I~~l~~~g~~id~fGVGT~Lvt~~ 94 (268)
+.+.|.+.||++.+.+.++.+.| .+.+.+|+.+..+.
T Consensus 157 ~~~~i~v~GGI~~~n~~~~~~~G--a~~v~vGsai~~~~ 193 (206)
T TIGR03128 157 KEARVAVAGGINLDTIPDVIKLG--PDIVIVGGAITKAA 193 (206)
T ss_pred CCCcEEEECCcCHHHHHHHHHcC--CCEEEEeehhcCCC
Confidence 34678889999999999999877 68999999998753
No 49
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=81.47 E-value=3.3 Score=36.58 Aligned_cols=35 Identities=17% Similarity=0.253 Sum_probs=30.9
Q ss_pred CeEEEEeCCC-CHHHHHHHhhcCCcccEEeecCccccc
Q 024420 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTC 93 (268)
Q Consensus 57 ~vkIi~S~~L-de~~I~~l~~~g~~id~fGVGT~Lvt~ 93 (268)
++.|++.||+ +.+.+.++.+.| .|+++|||.|+..
T Consensus 177 ~ipvia~GGI~~~~~~~~~l~~G--adgV~vGsal~~~ 212 (219)
T cd04729 177 GIPVIAEGRINSPEQAAKALELG--ADAVVVGSAITRP 212 (219)
T ss_pred CCCEEEeCCCCCHHHHHHHHHCC--CCEEEEchHHhCh
Confidence 4689999999 799999999888 7999999999764
No 50
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=81.31 E-value=9.1 Score=35.97 Aligned_cols=44 Identities=30% Similarity=0.403 Sum_probs=35.1
Q ss_pred CeEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccCCCCccceEEEE
Q 024420 57 KMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKL 105 (268)
Q Consensus 57 ~vkIi~S~~Lde~~I~~l~~~g~~id~fGVGT~Lvt~~~~p~l~~vyKL 105 (268)
.+.|.+|||++++.+.++.+.| +|++-||. ++++ .|++|+.+++
T Consensus 232 ~i~i~AiGGIt~~ni~~~a~~G--vd~IAvg~-l~~s--a~~~D~~~~~ 275 (277)
T PRK08072 232 AIVTEASGGITLENLPAYGGTG--VDYISLGF-LTHS--VKALDISFNI 275 (277)
T ss_pred CceEEEECCCCHHHHHHHHHcC--CCEEEECh-hhcC--CcccceEEEc
Confidence 4678899999999999999988 56666765 5543 6789988775
No 51
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=78.74 E-value=2.4 Score=35.50 Aligned_cols=36 Identities=11% Similarity=0.211 Sum_probs=31.8
Q ss_pred CCeEEEEeCCCCHHHHHHHhhcCCcccEEeecCccccc
Q 024420 56 EKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTC 93 (268)
Q Consensus 56 ~~vkIi~S~~Lde~~I~~l~~~g~~id~fGVGT~Lvt~ 93 (268)
.++.|++.||++++.+.++.+.| .+++.+|+.+..+
T Consensus 149 ~~~pv~a~GGi~~~~i~~~~~~G--a~~i~~g~~i~~~ 184 (196)
T cd00564 149 VEIPVVAIGGITPENAAEVLAAG--ADGVAVISAITGA 184 (196)
T ss_pred CCCCEEEECCCCHHHHHHHHHcC--CCEEEEehHhhcC
Confidence 45789999999999999999887 6899999999764
No 52
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=78.57 E-value=9.1 Score=36.19 Aligned_cols=67 Identities=24% Similarity=0.266 Sum_probs=47.8
Q ss_pred ccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccCCCCccce
Q 024420 22 AVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGC 101 (268)
Q Consensus 22 l~GVRlDSGDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g~~id~fGVGT~Lvt~~~~p~l~~ 101 (268)
...|-+|--++..+.+-+. +++ ..+.|-+|||+|++.|.++...|..+.+-| . |+++ .|++|+
T Consensus 214 aDiImLDn~s~e~l~~av~-~~~-----------~~~~leaSGgI~~~ni~~yA~tGVD~Is~g--a-lths--~~~~D~ 276 (281)
T PRK06543 214 VDTIMLDNFSLDDLREGVE-LVD-----------GRAIVEASGNVNLNTVGAIASTGVDVISVG--A-LTHS--VRALDL 276 (281)
T ss_pred CCEEEECCCCHHHHHHHHH-HhC-----------CCeEEEEECCCCHHHHHHHHhcCCCEEEeC--c-cccC--Ccccce
Confidence 4678888888776654433 332 235899999999999999998885554444 3 5543 678998
Q ss_pred EEEE
Q 024420 102 VFKL 105 (268)
Q Consensus 102 vyKL 105 (268)
.+++
T Consensus 277 sl~i 280 (281)
T PRK06543 277 GLDI 280 (281)
T ss_pred eeec
Confidence 8874
No 53
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=78.57 E-value=6.3 Score=38.62 Aligned_cols=56 Identities=29% Similarity=0.389 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHhHhhCCCCCCC-eEEEEeCCC-CHHHHHHHhhcCCcccEEeecCcccccCCCCccceEE
Q 024420 34 YLSCEARKFFRTIEKEFGVPDFEK-MSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVF 103 (268)
Q Consensus 34 ~ls~~~R~~ld~~~~~l~~~G~~~-vkIi~S~~L-de~~I~~l~~~g~~id~fGVGT~Lvt~~~~p~l~~vy 103 (268)
+.-.++.+.|++. |+.+ |++++||+| ++..+......|+ |.+++||...- +++|++
T Consensus 257 ~~l~~a~~~L~~~-------glr~~V~Li~sGgl~t~~dv~kalaLGA--D~v~igt~~li-----AlGC~~ 314 (368)
T PF01645_consen 257 YALARAHQALVKN-------GLRDRVSLIASGGLRTGDDVAKALALGA--DAVYIGTAALI-----ALGCIQ 314 (368)
T ss_dssp HHHHHHHHHHHCT-------T-CCCSEEEEESS--SHHHHHHHHHCT---SEEE-SHHHHH-----HCT--S
T ss_pred HHHHHHHHHHHHc-------CCCCceEEEEeCCccCHHHHHHHHhcCC--CeeEecchhhh-----hcchHH
Confidence 3344567777775 7665 999999998 5777777777886 89999999887 577763
No 54
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=78.54 E-value=4.8 Score=35.51 Aligned_cols=34 Identities=15% Similarity=0.194 Sum_probs=29.7
Q ss_pred CeEEEEeCCC-CHHHHHHHhhcCCcccEEeecCcccc
Q 024420 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVT 92 (268)
Q Consensus 57 ~vkIi~S~~L-de~~I~~l~~~g~~id~fGVGT~Lvt 92 (268)
++.++++||+ +.+.+.++.+.| .|++.|||.|+.
T Consensus 173 ~iPvia~GGI~t~~~~~~~l~~G--adgV~iGsai~~ 207 (221)
T PRK01130 173 GCPVIAEGRINTPEQAKKALELG--AHAVVVGGAITR 207 (221)
T ss_pred CCCEEEECCCCCHHHHHHHHHCC--CCEEEEchHhcC
Confidence 3579999999 799999999888 689999999875
No 55
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=78.42 E-value=1.6 Score=39.00 Aligned_cols=38 Identities=24% Similarity=0.406 Sum_probs=31.4
Q ss_pred CCCCeEEEEeCCCCHHHHHHHhhcCCcccEEeecCccccc
Q 024420 54 DFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTC 93 (268)
Q Consensus 54 G~~~vkIi~S~~Lde~~I~~l~~~g~~id~fGVGT~Lvt~ 93 (268)
.|++++++.+||++++-+.++++.| ....|+|+.|+..
T Consensus 145 p~p~~~~~ptGGV~~~N~~~~l~ag--~~~vg~Gs~L~~~ 182 (196)
T PF01081_consen 145 PFPDLPFMPTGGVNPDNLAEYLKAG--AVAVGGGSWLFPK 182 (196)
T ss_dssp TTTT-EEEEBSS--TTTHHHHHTST--TBSEEEESGGGSH
T ss_pred cCCCCeEEEcCCCCHHHHHHHHhCC--CEEEEECchhcCH
Confidence 5899999999999999999999877 6688999999874
No 56
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=78.17 E-value=15 Score=30.77 Aligned_cols=64 Identities=16% Similarity=0.063 Sum_probs=43.4
Q ss_pred CccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCC------CHHHHHHHhhcCCcccEEeecCcccc
Q 024420 21 KAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDL------NEETLDALNKQGHEVDAFGIGTYLVT 92 (268)
Q Consensus 21 ~l~GVRlDSGDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~L------de~~I~~l~~~g~~id~fGVGT~Lvt 92 (268)
++.++=.=++-.....+++.+.|++. |+++++|++.|.+ .++...++.+.|+ -..|+-||.+-+
T Consensus 56 d~V~lS~~~~~~~~~~~~~~~~L~~~-------~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~-~~vf~~~~~~~~ 125 (137)
T PRK02261 56 DAILVSSLYGHGEIDCRGLREKCIEA-------GLGDILLYVGGNLVVGKHDFEEVEKKFKEMGF-DRVFPPGTDPEE 125 (137)
T ss_pred CEEEEcCccccCHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCCccChHHHHHHHHHcCC-CEEECcCCCHHH
Confidence 33344333344455566667777765 7788899999998 5677788888884 447888887643
No 57
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=77.56 E-value=3.8 Score=41.14 Aligned_cols=93 Identities=20% Similarity=0.283 Sum_probs=68.8
Q ss_pred ccEEeeCC--CChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccc------c
Q 024420 22 AVGIRLDS--GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT------C 93 (268)
Q Consensus 22 l~GVRlDS--GDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g~~id~fGVGT~Lvt------~ 93 (268)
+..|=||| |+-.+... +.++..+ -+++..||++|-..-+..++|.++|+..--.|+|+-=+. .
T Consensus 264 vdvviLDSSqGnS~~qie-mik~iK~--------~yP~l~ViaGNVVT~~qa~nLI~aGaDgLrVGMGsGSiCiTqevma 334 (503)
T KOG2550|consen 264 VDVVILDSSQGNSIYQLE-MIKYIKE--------TYPDLQIIAGNVVTKEQAANLIAAGADGLRVGMGSGSICITQKVMA 334 (503)
T ss_pred CcEEEEecCCCcchhHHH-HHHHHHh--------hCCCceeeccceeeHHHHHHHHHccCceeEeccccCceeeeceeee
Confidence 45688999 77555543 3344444 379999999999999999999999998888888865432 3
Q ss_pred CCCCccceEEEEeEEC---CccccccCCCCCCCCCCc
Q 024420 94 YAQAALGCVFKLVEIN---KQPRIKLSEDVSKVSIPC 127 (268)
Q Consensus 94 ~~~p~l~~vyKLve~~---g~P~~K~S~~~~K~t~PG 127 (268)
-++|-...|||+.++. |-|+| ++ |-.+.+|
T Consensus 335 ~GrpQ~TAVy~va~~A~q~gvpvi--AD--GGiq~~G 367 (503)
T KOG2550|consen 335 CGRPQGTAVYKVAEFANQFGVPCI--AD--GGIQNVG 367 (503)
T ss_pred ccCCcccchhhHHHHHHhcCCcee--ec--CCcCccc
Confidence 3578899999999874 56887 44 5455555
No 58
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=77.33 E-value=14 Score=35.25 Aligned_cols=68 Identities=18% Similarity=0.170 Sum_probs=48.9
Q ss_pred ccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccCCCCccce
Q 024420 22 AVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGC 101 (268)
Q Consensus 22 l~GVRlDSGDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g~~id~fGVGT~Lvt~~~~p~l~~ 101 (268)
...|-+|--++..+.+-+. ++. .++.|-+|||++++.|.++...|..+.+-|- |.++ .|++|+
T Consensus 218 aDiImLDnmspe~l~~av~-~~~-----------~~~~leaSGGI~~~ni~~yA~tGVD~Is~ga---lths--a~~~Di 280 (290)
T PRK06559 218 ADIIMLDNMSLEQIEQAIT-LIA-----------GRSRIECSGNIDMTTISRFRGLAIDYVSSGS---LTHS--AKSLDF 280 (290)
T ss_pred CCEEEECCCCHHHHHHHHH-Hhc-----------CceEEEEECCCCHHHHHHHHhcCCCEEEeCc---cccC--Ccccce
Confidence 5678888888776654442 332 2579999999999999999998866555443 5443 678888
Q ss_pred EEEEe
Q 024420 102 VFKLV 106 (268)
Q Consensus 102 vyKLv 106 (268)
.+|..
T Consensus 281 sl~~~ 285 (290)
T PRK06559 281 SMKGL 285 (290)
T ss_pred eeech
Confidence 77654
No 59
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=75.82 E-value=19 Score=32.44 Aligned_cols=35 Identities=11% Similarity=0.330 Sum_probs=29.8
Q ss_pred CeEEEEeCCCCHHHHHHHhhcCCcccEEeecCccccc
Q 024420 57 KMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTC 93 (268)
Q Consensus 57 ~vkIi~S~~Lde~~I~~l~~~g~~id~fGVGT~Lvt~ 93 (268)
++.|.+-||++++.+..+.+.| .|+|=+||.+..+
T Consensus 167 ~~~I~vdGGI~~eni~~l~~aG--Ad~vVvGSaIf~~ 201 (220)
T PRK08883 167 DIRLEIDGGVKVDNIREIAEAG--ADMFVAGSAIFGQ 201 (220)
T ss_pred CeeEEEECCCCHHHHHHHHHcC--CCEEEEeHHHhCC
Confidence 4689999999999999999887 5777888998753
No 60
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=75.49 E-value=18 Score=34.67 Aligned_cols=68 Identities=19% Similarity=0.282 Sum_probs=47.5
Q ss_pred CccEEeeCCC---------ChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcCCcccEEeecCccc
Q 024420 21 KAVGIRLDSG---------DLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLV 91 (268)
Q Consensus 21 ~l~GVRlDSG---------Dl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g~~id~fGVGT~Lv 91 (268)
....|-+|-. ++..+.+.+. ++. ..+.|-+|||++++.|.++...|..+.+-|. |+
T Consensus 229 gaDiImLDnm~~~~~~~~~~~e~l~~av~-~~~-----------~~~~lEaSGGIt~~ni~~yA~tGVD~Is~Ga---lt 293 (308)
T PLN02716 229 SLTRVMLDNMVVPLENGDVDVSMLKEAVE-LIN-----------GRFETEASGNVTLDTVHKIGQTGVTYISSGA---LT 293 (308)
T ss_pred CCCEEEeCCCcccccccCCCHHHHHHHHH-hhC-----------CCceEEEECCCCHHHHHHHHHcCCCEEEeCc---cc
Confidence 3567888888 7555543332 221 2356999999999999999998865555543 44
Q ss_pred ccCCCCccceEEEE
Q 024420 92 TCYAQAALGCVFKL 105 (268)
Q Consensus 92 t~~~~p~l~~vyKL 105 (268)
++ .|++|+.+++
T Consensus 294 hs--a~~~Disl~i 305 (308)
T PLN02716 294 HS--VKALDISLKI 305 (308)
T ss_pred cC--CCccceEEEE
Confidence 43 6889998887
No 61
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=75.15 E-value=4 Score=37.22 Aligned_cols=37 Identities=22% Similarity=0.433 Sum_probs=34.4
Q ss_pred CCCCeEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccc
Q 024420 54 DFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (268)
Q Consensus 54 G~~~vkIi~S~~Lde~~I~~l~~~g~~id~fGVGT~Lvt 92 (268)
.|.+++++.+||+++.-+.++...| +..+|+|+.|+.
T Consensus 150 P~~~v~~~pTGGVs~~N~~~yla~g--v~avG~Gs~l~~ 186 (211)
T COG0800 150 PFPQVRFCPTGGVSLDNAADYLAAG--VVAVGLGSWLVP 186 (211)
T ss_pred CCCCCeEeecCCCCHHHHHHHHhCC--ceEEecCccccC
Confidence 4889999999999999999999887 999999999985
No 62
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=75.15 E-value=12 Score=33.35 Aligned_cols=37 Identities=22% Similarity=0.381 Sum_probs=32.6
Q ss_pred CCC-CeEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccc
Q 024420 54 DFE-KMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (268)
Q Consensus 54 G~~-~vkIi~S~~Lde~~I~~l~~~g~~id~fGVGT~Lvt 92 (268)
.++ ++.+++.||++.+.+.++.+.| .++.+||+.|..
T Consensus 147 ~~~~~ipvvaiGGI~~~n~~~~~~aG--a~~vav~s~l~~ 184 (206)
T PRK09140 147 VLPPDVPVFAVGGVTPENLAPYLAAG--AAGFGLGSALYR 184 (206)
T ss_pred hcCCCCeEEEECCCCHHHHHHHHHCC--CeEEEEehHhcc
Confidence 354 6899999999999999999887 689999999976
No 63
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=74.89 E-value=8 Score=35.17 Aligned_cols=37 Identities=14% Similarity=0.346 Sum_probs=31.1
Q ss_pred CCCCeEEEEeCCCCHHHHHHHhhcCCcccEEeecCccccc
Q 024420 54 DFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTC 93 (268)
Q Consensus 54 G~~~vkIi~S~~Lde~~I~~l~~~g~~id~fGVGT~Lvt~ 93 (268)
++ +++|-+-||++++.|..+.+.|+ |.|=+||.+...
T Consensus 169 ~~-~~~IeVDGGI~~eti~~l~~aGa--Di~V~GSaiF~~ 205 (223)
T PRK08745 169 GK-PIRLEIDGGVKADNIGAIAAAGA--DTFVAGSAIFNA 205 (223)
T ss_pred CC-CeeEEEECCCCHHHHHHHHHcCC--CEEEEChhhhCC
Confidence 44 47999999999999999999886 777788998753
No 64
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=74.85 E-value=3.6 Score=35.30 Aligned_cols=36 Identities=14% Similarity=0.225 Sum_probs=31.6
Q ss_pred CeEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccC
Q 024420 57 KMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCY 94 (268)
Q Consensus 57 ~vkIi~S~~Lde~~I~~l~~~g~~id~fGVGT~Lvt~~ 94 (268)
++.|++.||++++.+.++.+.| .+++.+|+.+..+.
T Consensus 152 ~~pv~a~GGI~~~~~~~~~~~G--~~gva~~~~i~~~~ 187 (196)
T TIGR00693 152 DIPIVAIGGITLENAAEVLAAG--ADGVAVVSAIMQAA 187 (196)
T ss_pred CCCEEEECCcCHHHHHHHHHcC--CCEEEEhHHhhCCC
Confidence 4789999999999999999876 58999999998754
No 65
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=73.28 E-value=7.9 Score=39.01 Aligned_cols=131 Identities=17% Similarity=0.159 Sum_probs=82.5
Q ss_pred HHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcCCcccEEee
Q 024420 7 NFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGI 86 (268)
Q Consensus 7 nai~Va~~L~~~G~~l~GVRlDSGDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g~~id~fGV 86 (268)
...+.+..|-+.|.+. |=+|+-+- .++.+.+++++... -++++.|++.|..+.+.+..|.+.|+.....|+
T Consensus 225 ~~~~ra~~Lv~aGVd~--i~~D~a~g--~~~~~~~~i~~i~~-----~~~~~~vi~g~~~t~~~~~~l~~~G~d~i~vg~ 295 (475)
T TIGR01303 225 DVGGKAKALLDAGVDV--LVIDTAHG--HQVKMISAIKAVRA-----LDLGVPIVAGNVVSAEGVRDLLEAGANIIKVGV 295 (475)
T ss_pred cHHHHHHHHHHhCCCE--EEEeCCCC--CcHHHHHHHHHHHH-----HCCCCeEEEeccCCHHHHHHHHHhCCCEEEECC
Confidence 3456777788888665 66788542 13334444444321 257789999999999999999999987766666
Q ss_pred c------CcccccCCCCccceEEEEeEE---CCccccccCCCCCCCCCCc--cceeeeeccCCCCeeeeEEecCCCC
Q 024420 87 G------TYLVTCYAQAALGCVFKLVEI---NKQPRIKLSEDVSKVSIPC--KKRSYRLYGKEGYPLVDIMTGENEP 152 (268)
Q Consensus 87 G------T~Lvt~~~~p~l~~vyKLve~---~g~P~~K~S~~~~K~t~PG--~K~vyR~~~~~g~~~~D~i~l~~e~ 152 (268)
| |+.+|..+.|.+.-+|.+++. .|.|++ .+ |....|| .|.+. .+++--++.-+++..+|.
T Consensus 296 g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~~vi--ad--Ggi~~~~di~kala--~GA~~vm~g~~~ag~~es 366 (475)
T TIGR01303 296 GPGAMCTTRMMTGVGRPQFSAVLECAAEARKLGGHVW--AD--GGVRHPRDVALALA--AGASNVMVGSWFAGTYES 366 (475)
T ss_pred cCCccccCccccCCCCchHHHHHHHHHHHHHcCCcEE--Ee--CCCCCHHHHHHHHH--cCCCEEeechhhcccccC
Confidence 6 666677778888888888643 245554 33 4455555 23332 233333444555555554
No 66
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=72.89 E-value=4.3 Score=34.98 Aligned_cols=37 Identities=14% Similarity=0.215 Sum_probs=31.7
Q ss_pred CCeEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccC
Q 024420 56 EKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCY 94 (268)
Q Consensus 56 ~~vkIi~S~~Lde~~I~~l~~~g~~id~fGVGT~Lvt~~ 94 (268)
+++.|++.||++.+.+.++.+.| .+++.+|+.+..+.
T Consensus 159 ~~~~v~a~GGI~~~~i~~~~~~G--a~gv~~gs~i~~~~ 195 (212)
T PRK00043 159 GDIPIVAIGGITPENAPEVLEAG--ADGVAVVSAITGAE 195 (212)
T ss_pred CCCCEEEECCcCHHHHHHHHHcC--CCEEEEeHHhhcCC
Confidence 34799999999999999999887 67889999987643
No 67
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=71.44 E-value=4.8 Score=39.92 Aligned_cols=131 Identities=23% Similarity=0.277 Sum_probs=77.9
Q ss_pred HHHHHHHHHHhhcCCCccEEeeCC--CChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcCCcccE
Q 024420 6 PNFCAVALALNDLGYKAVGIRLDS--GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDA 83 (268)
Q Consensus 6 ~nai~Va~~L~~~G~~l~GVRlDS--GDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g~~id~ 83 (268)
++..+-+.+|.+.|.+ .|=+|+ |+- ..+.+.+.+... -++++.|++.|-++.+....+.+.|+....
T Consensus 223 ~~~~~r~~~L~~aG~d--~I~vd~a~g~~----~~~~~~i~~i~~-----~~~~~~vi~G~v~t~~~a~~l~~aGad~i~ 291 (450)
T TIGR01302 223 EFDKERAEALVKAGVD--VIVIDSSHGHS----IYVIDSIKEIKK-----TYPDLDIIAGNVATAEQAKALIDAGADGLR 291 (450)
T ss_pred hhHHHHHHHHHHhCCC--EEEEECCCCcH----hHHHHHHHHHHH-----hCCCCCEEEEeCCCHHHHHHHHHhCCCEEE
Confidence 3556677778887855 577788 442 223333333211 246789999999999999999999976554
Q ss_pred Eeec------CcccccCCCCccceEEEEeEE---CCccccccCCCCCCCCCCcc-ceeeeeccCCCCeeeeEEecCCCC
Q 024420 84 FGIG------TYLVTCYAQAALGCVFKLVEI---NKQPRIKLSEDVSKVSIPCK-KRSYRLYGKEGYPLVDIMTGENEP 152 (268)
Q Consensus 84 fGVG------T~Lvt~~~~p~l~~vyKLve~---~g~P~~K~S~~~~K~t~PG~-K~vyR~~~~~g~~~~D~i~l~~e~ 152 (268)
-|+| |..++..+.|.+..++.+.++ .+.|++ .+ |-...||- ...+.. +++--+++-+++..+|.
T Consensus 292 vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpvi--ad--GGi~~~~di~kAla~-GA~~V~~G~~~a~~~e~ 365 (450)
T TIGR01302 292 VGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVI--AD--GGIRYSGDIVKALAA-GADAVMLGSLLAGTTES 365 (450)
T ss_pred ECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCeEE--Ee--CCCCCHHHHHHHHHc-CCCEEEECchhhcCCcC
Confidence 4554 445555667888887777654 244544 22 33444441 122222 33334455667766664
No 68
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=71.35 E-value=15 Score=33.84 Aligned_cols=33 Identities=18% Similarity=0.198 Sum_probs=27.2
Q ss_pred eEEEEeCCC-CHHHHHHHhhcCCcccEEeecCcccc
Q 024420 58 MSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVT 92 (268)
Q Consensus 58 vkIi~S~~L-de~~I~~l~~~g~~id~fGVGT~Lvt 92 (268)
+.|+++||+ +.+.+.++...| .|...||+.++-
T Consensus 235 ipvi~~GGI~s~~da~~~l~~G--Ad~V~igr~~l~ 268 (300)
T TIGR01037 235 IPIIGVGGITSFEDALEFLMAG--ASAVQVGTAVYY 268 (300)
T ss_pred CCEEEECCCCCHHHHHHHHHcC--CCceeecHHHhc
Confidence 578999998 788888888777 788889998875
No 69
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=70.12 E-value=9.6 Score=38.18 Aligned_cols=129 Identities=20% Similarity=0.252 Sum_probs=79.2
Q ss_pred HHHHHHHHHhhcCCCccEEeeCC--CChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcCCcccEE
Q 024420 7 NFCAVALALNDLGYKAVGIRLDS--GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAF 84 (268)
Q Consensus 7 nai~Va~~L~~~G~~l~GVRlDS--GDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g~~id~f 84 (268)
...+.+++|.+.|.++ |-+|+ |.+..+. ...+.+.+. ++++.|++.|.++.+....+.+.|+.....
T Consensus 228 ~~~e~a~~L~~agvdv--ivvD~a~g~~~~vl-~~i~~i~~~--------~p~~~vi~g~v~t~e~a~~l~~aGad~i~v 296 (486)
T PRK05567 228 DNEERAEALVEAGVDV--LVVDTAHGHSEGVL-DRVREIKAK--------YPDVQIIAGNVATAEAARALIEAGADAVKV 296 (486)
T ss_pred chHHHHHHHHHhCCCE--EEEECCCCcchhHH-HHHHHHHhh--------CCCCCEEEeccCCHHHHHHHHHcCCCEEEE
Confidence 3467888888888774 55675 6643332 223333332 367899999999999999999999865555
Q ss_pred eec------CcccccCCCCccceEEEEeEE---CCccccccCCCCCCCCCCc--cceeeeeccCCCCeeeeEEecCCCC
Q 024420 85 GIG------TYLVTCYAQAALGCVFKLVEI---NKQPRIKLSEDVSKVSIPC--KKRSYRLYGKEGYPLVDIMTGENEP 152 (268)
Q Consensus 85 GVG------T~Lvt~~~~p~l~~vyKLve~---~g~P~~K~S~~~~K~t~PG--~K~vyR~~~~~g~~~~D~i~l~~e~ 152 (268)
|+| |+.++..+.|.+..++++.+. .+.|++ .+ |....|+ .|.+ .+ +++--+++-+++...|.
T Consensus 297 g~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~vi--ad--GGi~~~~di~kAl-a~-GA~~v~~G~~~a~~~e~ 369 (486)
T PRK05567 297 GIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVI--AD--GGIRYSGDIAKAL-AA-GASAVMLGSMLAGTEEA 369 (486)
T ss_pred CCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEE--Ec--CCCCCHHHHHHHH-Hh-CCCEEEECccccccccC
Confidence 554 344455567888888777653 234544 22 4444454 2222 22 34444555667777764
No 70
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=69.70 E-value=9.2 Score=36.14 Aligned_cols=76 Identities=18% Similarity=0.270 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHhhcCCCccEEe----e-------CCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCC-CHHHHH
Q 024420 5 VPNFCAVALALNDLGYKAVGIR----L-------DSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDL-NEETLD 72 (268)
Q Consensus 5 v~nai~Va~~L~~~G~~l~GVR----l-------DSGDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~L-de~~I~ 72 (268)
..-++.++++|.+.|..+.-|- . .++.-..+++++++. .++.|++.|++ +.+.++
T Consensus 240 ~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~-------------~~iPVi~~G~i~t~~~a~ 306 (336)
T cd02932 240 LEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQE-------------AGIPVIAVGLITDPEQAE 306 (336)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhh-------------CCCCEEEeCCCCCHHHHH
Confidence 5678899999988887665431 0 011112233333322 24689999998 888899
Q ss_pred HHhhcCCcccEEeecCcccccC
Q 024420 73 ALNKQGHEVDAFGIGTYLVTCY 94 (268)
Q Consensus 73 ~l~~~g~~id~fGVGT~Lvt~~ 94 (268)
++.++|. .|..++|+.++..+
T Consensus 307 ~~l~~g~-aD~V~~gR~~i~dP 327 (336)
T cd02932 307 AILESGR-ADLVALGRELLRNP 327 (336)
T ss_pred HHHHcCC-CCeehhhHHHHhCc
Confidence 9998775 89999999998754
No 71
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=69.68 E-value=26 Score=32.98 Aligned_cols=66 Identities=15% Similarity=0.030 Sum_probs=43.7
Q ss_pred ccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccCCCCccce
Q 024420 22 AVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGC 101 (268)
Q Consensus 22 l~GVRlDSGDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g~~id~fGVGT~Lvt~~~~p~l~~ 101 (268)
...|-+|--++..+...+. ++++ ..+++.|-+|||+|++.|.++...|. |.+=+|. +.+ ++++|+
T Consensus 209 aDiI~lDn~~~e~l~~~v~-~l~~--------~~~~~~leasGGI~~~ni~~ya~~Gv--D~is~ga-l~~---a~~~Di 273 (277)
T TIGR01334 209 PDILQLDKFTPQQLHHLHE-RLKF--------FDHIPTLAAAGGINPENIADYIEAGI--DLFITSA-PYY---AAPCDI 273 (277)
T ss_pred cCEEEECCCCHHHHHHHHH-HHhc--------cCCCEEEEEECCCCHHHHHHHHhcCC--CEEEeCc-cee---cCccce
Confidence 4577788777666554443 4443 23578999999999999999998874 4443443 433 455555
Q ss_pred E
Q 024420 102 V 102 (268)
Q Consensus 102 v 102 (268)
-
T Consensus 274 ~ 274 (277)
T TIGR01334 274 K 274 (277)
T ss_pred E
Confidence 3
No 72
>PRK07695 transcriptional regulator TenI; Provisional
Probab=69.61 E-value=4.9 Score=35.00 Aligned_cols=36 Identities=11% Similarity=0.203 Sum_probs=31.8
Q ss_pred CeEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccC
Q 024420 57 KMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCY 94 (268)
Q Consensus 57 ~vkIi~S~~Lde~~I~~l~~~g~~id~fGVGT~Lvt~~ 94 (268)
++.|++.||++++.+.++.+.| .++++||+.+..+.
T Consensus 149 ~ipvia~GGI~~~~~~~~~~~G--a~gvav~s~i~~~~ 184 (201)
T PRK07695 149 SIPVIAIGGITPENTRDVLAAG--VSGIAVMSGIFSSA 184 (201)
T ss_pred CCCEEEEcCCCHHHHHHHHHcC--CCEEEEEHHHhcCC
Confidence 4689999999999999999877 69999999998753
No 73
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=67.78 E-value=18 Score=31.47 Aligned_cols=36 Identities=17% Similarity=0.334 Sum_probs=30.7
Q ss_pred eEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccCC
Q 024420 58 MSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYA 95 (268)
Q Consensus 58 vkIi~S~~Lde~~I~~l~~~g~~id~fGVGT~Lvt~~~ 95 (268)
..|++.||++++.+.++.+.| .|++=||+.++.+.+
T Consensus 171 ~~i~v~GGI~~~nv~~l~~~G--aD~vvvgSai~~~~d 206 (220)
T PRK05581 171 ILIEVDGGINADNIKECAEAG--ADVFVAGSAVFGAPD 206 (220)
T ss_pred ceEEEECCCCHHHHHHHHHcC--CCEEEEChhhhCCCC
Confidence 578899999999999999866 589999999987543
No 74
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=66.38 E-value=10 Score=34.11 Aligned_cols=37 Identities=3% Similarity=-0.004 Sum_probs=31.0
Q ss_pred CCCCeEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccc
Q 024420 54 DFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (268)
Q Consensus 54 G~~~vkIi~S~~Lde~~I~~l~~~g~~id~fGVGT~Lvt 92 (268)
.|++++++.+||++.+.+.++++.|+. ..|.|+.|+.
T Consensus 141 plp~~~l~ptGGV~~~n~~~~l~ag~~--~~~ggs~l~~ 177 (201)
T PRK06015 141 PLAGTFFCPTGGISLKNARDYLSLPNV--VCVGGSWVAP 177 (201)
T ss_pred hCCCCcEEecCCCCHHHHHHHHhCCCe--EEEEchhhCC
Confidence 689999999999999999999998753 5555777764
No 75
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=66.35 E-value=8.7 Score=38.12 Aligned_cols=133 Identities=15% Similarity=0.206 Sum_probs=79.5
Q ss_pred HHHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcCCcccEEe
Q 024420 6 PNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFG 85 (268)
Q Consensus 6 ~nai~Va~~L~~~G~~l~GVRlDSGDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g~~id~fG 85 (268)
+...+-+.+|-+.|.++.. +|+.+.- +..+.+++.+... -++++.|++.|-.+.+....+.+.|+.....|
T Consensus 152 ~~~~~~v~~lv~aGvDvI~--iD~a~g~--~~~~~~~v~~ik~-----~~p~~~vi~g~V~T~e~a~~l~~aGaD~I~vG 222 (404)
T PRK06843 152 IDTIERVEELVKAHVDILV--IDSAHGH--STRIIELVKKIKT-----KYPNLDLIAGNIVTKEAALDLISVGADCLKVG 222 (404)
T ss_pred HHHHHHHHHHHhcCCCEEE--EECCCCC--ChhHHHHHHHHHh-----hCCCCcEEEEecCCHHHHHHHHHcCCCEEEEC
Confidence 4567788888888877644 5886531 3333333333321 25677899999999999999999998665556
Q ss_pred ec------CcccccCCCCccceEEEEeEE---CCccccccCCCCCCCCCCc-cceeeeeccCCCCeeeeEEecCCCC
Q 024420 86 IG------TYLVTCYAQAALGCVFKLVEI---NKQPRIKLSEDVSKVSIPC-KKRSYRLYGKEGYPLVDIMTGENEP 152 (268)
Q Consensus 86 VG------T~Lvt~~~~p~l~~vyKLve~---~g~P~~K~S~~~~K~t~PG-~K~vyR~~~~~g~~~~D~i~l~~e~ 152 (268)
+| |+.++..+.|.+..++.+.++ -+.|++ .+ |....|| ....+. .+++.-+++-.++..+|.
T Consensus 223 ~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVI--Ad--GGI~~~~Di~KALa-lGA~aVmvGs~~agt~Es 294 (404)
T PRK06843 223 IGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICII--AD--GGIRFSGDVVKAIA-AGADSVMIGNLFAGTKES 294 (404)
T ss_pred CCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeEE--Ee--CCCCCHHHHHHHHH-cCCCEEEEcceeeeeecC
Confidence 54 244444456766665555443 144654 33 5555555 222222 234444555667766664
No 76
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=66.10 E-value=31 Score=31.66 Aligned_cols=36 Identities=11% Similarity=0.235 Sum_probs=31.6
Q ss_pred eEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccCC
Q 024420 58 MSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYA 95 (268)
Q Consensus 58 vkIi~S~~Lde~~I~~l~~~g~~id~fGVGT~Lvt~~~ 95 (268)
++|-+.||++++.|..+...| .+.|=||.+++.+.+
T Consensus 165 ~~vAVaGGI~~~~i~~~~~~~--~~ivIvGraIt~a~d 200 (217)
T COG0269 165 AKVAVAGGITPEDIPLFKGIG--ADIVIVGRAITGAKD 200 (217)
T ss_pred ceEEEecCCCHHHHHHHhcCC--CCEEEECchhcCCCC
Confidence 699999999999999999776 778889999987654
No 77
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=65.29 E-value=21 Score=36.13 Aligned_cols=131 Identities=19% Similarity=0.269 Sum_probs=77.8
Q ss_pred HHHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcCCcccEEe
Q 024420 6 PNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFG 85 (268)
Q Consensus 6 ~nai~Va~~L~~~G~~l~GVRlDSGDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g~~id~fG 85 (268)
+..++.+.+|.+.|..+.-|=.-.|+-... .+..+.+.+. ++++.|++.|-.+.+....+.+.|+....-|
T Consensus 240 ~~~~~~~~~l~~ag~d~i~id~a~G~s~~~-~~~i~~ik~~--------~~~~~v~aG~V~t~~~a~~~~~aGad~I~vg 310 (495)
T PTZ00314 240 PEDIERAAALIEAGVDVLVVDSSQGNSIYQ-IDMIKKLKSN--------YPHVDIIAGNVVTADQAKNLIDAGADGLRIG 310 (495)
T ss_pred HHHHHHHHHHHHCCCCEEEEecCCCCchHH-HHHHHHHHhh--------CCCceEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 456788888988887765543323553321 2333334332 3578999999999999999999998765556
Q ss_pred ec------CcccccCCCCccceEEEEeEE---CCccccccCCCCCCCCCCc--cceeeeeccCCCCeeeeEEecCCC
Q 024420 86 IG------TYLVTCYAQAALGCVFKLVEI---NKQPRIKLSEDVSKVSIPC--KKRSYRLYGKEGYPLVDIMTGENE 151 (268)
Q Consensus 86 VG------T~Lvt~~~~p~l~~vyKLve~---~g~P~~K~S~~~~K~t~PG--~K~vyR~~~~~g~~~~D~i~l~~e 151 (268)
+| |+.++..+.|.+..++.+.++ .|.|++ .+ |....|+ .|.+ . .+++.-+++-.++..+|
T Consensus 311 ~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vI--ad--GGi~~~~di~kAl-a-~GA~~Vm~G~~~a~~~e 381 (495)
T PTZ00314 311 MGSGSICITQEVCAVGRPQASAVYHVARYARERGVPCI--AD--GGIKNSGDICKAL-A-LGADCVMLGSLLAGTEE 381 (495)
T ss_pred CcCCcccccchhccCCCChHHHHHHHHHHHhhcCCeEE--ec--CCCCCHHHHHHHH-H-cCCCEEEECchhccccc
Confidence 54 344455567877776666543 234544 33 4444444 2222 1 23444444455555555
No 78
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=64.58 E-value=57 Score=27.06 Aligned_cols=69 Identities=16% Similarity=0.185 Sum_probs=37.8
Q ss_pred HHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCH---HHHHHH-hhcCCccc
Q 024420 7 NFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNE---ETLDAL-NKQGHEVD 82 (268)
Q Consensus 7 nai~Va~~L~~~G~~l~GVRlDSGDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde---~~I~~l-~~~g~~id 82 (268)
|.-.++..|++.|.++....+=.-|...+...+++.++. .+ -|+.|||... +...+. .+.| .+.
T Consensus 28 n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~----------~D-liIttGG~g~g~~D~t~~ai~~~g-~~~ 95 (144)
T TIGR00177 28 NGPLLAALLEEAGFNVSRLGIVPDDPEEIREILRKAVDE----------AD-VVLTTGGTGVGPRDVTPEALEELG-EKE 95 (144)
T ss_pred cHHHHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHHHhC----------CC-EEEECCCCCCCCCccHHHHHHHhC-cEE
Confidence 445566667777877766666566666665555554432 34 5666665543 222222 2233 566
Q ss_pred EEeec
Q 024420 83 AFGIG 87 (268)
Q Consensus 83 ~fGVG 87 (268)
.+|+|
T Consensus 96 ~~gv~ 100 (144)
T TIGR00177 96 IPGFG 100 (144)
T ss_pred Eeeec
Confidence 66775
No 79
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=63.71 E-value=63 Score=30.77 Aligned_cols=47 Identities=23% Similarity=0.418 Sum_probs=36.5
Q ss_pred CCeEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccCCCCccceEEEEeE
Q 024420 56 EKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVE 107 (268)
Q Consensus 56 ~~vkIi~S~~Lde~~I~~l~~~g~~id~fGVGT~Lvt~~~~p~l~~vyKLve 107 (268)
.++.+=+||+++++.|.++...| +|.+-+|. |+++ .|.+|+.+++..
T Consensus 233 ~~~~lEaSGgIt~~ni~~yA~tG--VD~IS~ga-lths--~~~lDisl~~~~ 279 (280)
T COG0157 233 GRALLEASGGITLENIREYAETG--VDVISVGA-LTHS--APALDISLDIVR 279 (280)
T ss_pred CceEEEEeCCCCHHHHHHHhhcC--CCEEEeCc-cccC--CcccceEEEeec
Confidence 47899999999999999999887 45555543 4443 788999998763
No 80
>PRK14057 epimerase; Provisional
Probab=63.50 E-value=18 Score=33.72 Aligned_cols=45 Identities=20% Similarity=0.169 Sum_probs=34.2
Q ss_pred HHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccc
Q 024420 38 EARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (268)
Q Consensus 38 ~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g~~id~fGVGT~Lvt 92 (268)
++|+++++. |+ ++.|-+-||++++.|..+.+.|+ |.|=+|+.+..
T Consensus 182 ~lr~~~~~~-------~~-~~~IeVDGGI~~~ti~~l~~aGa--d~~V~GSalF~ 226 (254)
T PRK14057 182 QLLCLLGDK-------RE-GKIIVIDGSLTQDQLPSLIAQGI--DRVVSGSALFR 226 (254)
T ss_pred HHHHHHHhc-------CC-CceEEEECCCCHHHHHHHHHCCC--CEEEEChHhhC
Confidence 345566553 55 46999999999999999999985 45656788764
No 81
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=63.37 E-value=20 Score=32.85 Aligned_cols=46 Identities=13% Similarity=0.098 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccc
Q 024420 37 CEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (268)
Q Consensus 37 ~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g~~id~fGVGT~Lvt 92 (268)
+++|+++++. |+ ++.|-+-||++++.+..+.+.|+ |.|=+||.+..
T Consensus 167 ~~lr~~~~~~-------~~-~~~IeVDGGI~~~ti~~l~~aGa--D~~V~GSalF~ 212 (228)
T PRK08091 167 IQVENRLGNR-------RV-EKLISIDGSMTLELASYLKQHQI--DWVVSGSALFS 212 (228)
T ss_pred HHHHHHHHhc-------CC-CceEEEECCCCHHHHHHHHHCCC--CEEEEChhhhC
Confidence 3455666553 55 46899999999999999999885 55667888765
No 82
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=62.14 E-value=29 Score=32.12 Aligned_cols=34 Identities=18% Similarity=0.200 Sum_probs=29.7
Q ss_pred CeEEEEeCCC-CHHHHHHHhhcCCcccEEeecCcccc
Q 024420 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVT 92 (268)
Q Consensus 57 ~vkIi~S~~L-de~~I~~l~~~g~~id~fGVGT~Lvt 92 (268)
++.|+++|++ +.+.+.++...| .|...|||.++.
T Consensus 234 ~ipvi~~GGI~~~~da~~~l~aG--Ad~V~igr~ll~ 268 (301)
T PRK07259 234 DIPIIGMGGISSAEDAIEFIMAG--ASAVQVGTANFY 268 (301)
T ss_pred CCCEEEECCCCCHHHHHHHHHcC--CCceeEcHHHhc
Confidence 4689999998 899999999888 589999999886
No 83
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=62.10 E-value=19 Score=30.82 Aligned_cols=35 Identities=17% Similarity=0.325 Sum_probs=29.7
Q ss_pred eEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccC
Q 024420 58 MSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCY 94 (268)
Q Consensus 58 vkIi~S~~Lde~~I~~l~~~g~~id~fGVGT~Lvt~~ 94 (268)
+.|++.||++.+.+.++.+.| .|++-||+.+....
T Consensus 166 ~~i~v~GGI~~env~~l~~~g--ad~iivgsai~~~~ 200 (210)
T TIGR01163 166 ILIEVDGGVNDDNARELAEAG--ADILVAGSAIFGAD 200 (210)
T ss_pred ceEEEECCcCHHHHHHHHHcC--CCEEEEChHHhCCC
Confidence 468999999999999998776 57899999998643
No 84
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=61.77 E-value=20 Score=34.65 Aligned_cols=44 Identities=20% Similarity=0.249 Sum_probs=32.2
Q ss_pred eEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccCCCCccceEEEEeE
Q 024420 58 MSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVE 107 (268)
Q Consensus 58 vkIi~S~~Lde~~I~~l~~~g~~id~fGVGT~Lvt~~~~p~l~~vyKLve 107 (268)
+.|+++|+++.+.++++++.|. .|..|+|..++..+ +++-|+.+
T Consensus 293 ~pv~~~G~~~~~~ae~~i~~G~-~D~V~~gR~~iadP-----d~~~k~~~ 336 (362)
T PRK10605 293 GVIIGAGAYTAEKAETLIGKGL-IDAVAFGRDYIANP-----DLVARLQR 336 (362)
T ss_pred CCEEEeCCCCHHHHHHHHHcCC-CCEEEECHHhhhCc-----cHHHHHhc
Confidence 3577888888888888888775 78888888887743 45555543
No 85
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=61.60 E-value=26 Score=29.90 Aligned_cols=36 Identities=25% Similarity=0.350 Sum_probs=31.0
Q ss_pred CeEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccC
Q 024420 57 KMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCY 94 (268)
Q Consensus 57 ~vkIi~S~~Lde~~I~~l~~~g~~id~fGVGT~Lvt~~ 94 (268)
++.|++.||++.+.+.++.+.| +|++=||+.++...
T Consensus 166 ~~pi~v~GGI~~env~~~~~~g--ad~iivgsai~~~~ 201 (211)
T cd00429 166 NLLIEVDGGINLETIPLLAEAG--ADVLVAGSALFGSD 201 (211)
T ss_pred CeEEEEECCCCHHHHHHHHHcC--CCEEEECHHHhCCC
Confidence 3689999999999999999877 57889999998754
No 86
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=61.10 E-value=34 Score=31.96 Aligned_cols=69 Identities=17% Similarity=0.150 Sum_probs=52.5
Q ss_pred HHHHHHHhhcCCC-ccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcCCcccEEeec
Q 024420 9 CAVALALNDLGYK-AVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIG 87 (268)
Q Consensus 9 i~Va~~L~~~G~~-l~GVRlDSGDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g~~id~fGVG 87 (268)
+++|+...+.|.+ +.-|=| |.. ...-++++..+ ..+.|.+.||+..+.++++.+.| .+..++|
T Consensus 41 ~~~A~~~~~~Ga~~lHvVDL--g~~--n~~~i~~i~~~----------~~~~v~vGGGIr~e~v~~~l~aG--a~rVvIG 104 (253)
T TIGR02129 41 SYYAKLYKDDGVKGCHVIML--GPN--NDDAAKEALHA----------YPGGLQVGGGINDTNAQEWLDEG--ASHVIVT 104 (253)
T ss_pred HHHHHHHHHcCCCEEEEEEC--CCC--cHHHHHHHHHh----------CCCCEEEeCCcCHHHHHHHHHcC--CCEEEEC
Confidence 6788888888876 446666 555 33445556555 34699999999999999999988 5678899
Q ss_pred Cccccc
Q 024420 88 TYLVTC 93 (268)
Q Consensus 88 T~Lvt~ 93 (268)
|.+++.
T Consensus 105 S~av~~ 110 (253)
T TIGR02129 105 SWLFTK 110 (253)
T ss_pred cHHHhC
Confidence 999874
No 87
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=60.02 E-value=52 Score=30.25 Aligned_cols=35 Identities=17% Similarity=0.181 Sum_probs=30.3
Q ss_pred CeEEEEeCCC-CHHHHHHHhhcCCcccEEeecCccccc
Q 024420 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTC 93 (268)
Q Consensus 57 ~vkIi~S~~L-de~~I~~l~~~g~~id~fGVGT~Lvt~ 93 (268)
++.|+++|++ +.+.+.++...| .|..+|||.++..
T Consensus 231 ~ipii~~GGI~~~~da~~~l~~G--Ad~V~igra~l~~ 266 (296)
T cd04740 231 EIPIIGVGGIASGEDALEFLMAG--ASAVQVGTANFVD 266 (296)
T ss_pred CCCEEEECCCCCHHHHHHHHHcC--CCEEEEchhhhcC
Confidence 4689999999 789999999888 5999999999873
No 88
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=59.18 E-value=29 Score=30.97 Aligned_cols=75 Identities=16% Similarity=0.093 Sum_probs=48.7
Q ss_pred HHHHHHHHHhhcCCCccEE--eeCCCChH-HHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCC-CHHHHHHHhhc-CCcc
Q 024420 7 NFCAVALALNDLGYKAVGI--RLDSGDLA-YLSCEARKFFRTIEKEFGVPDFEKMSITASNDL-NEETLDALNKQ-GHEV 81 (268)
Q Consensus 7 nai~Va~~L~~~G~~l~GV--RlDSGDl~-~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~L-de~~I~~l~~~-g~~i 81 (268)
..+..++.|.+.|....-| |..+|... +.-..++++.+. .++.++++||+ +.+.+.++.+. | +
T Consensus 150 ~~~~~~~~l~~~G~d~i~v~~i~~~g~~~g~~~~~i~~i~~~----------~~~pvia~GGi~~~~di~~~l~~~g--~ 217 (243)
T cd04731 150 DAVEWAKEVEELGAGEILLTSMDRDGTKKGYDLELIRAVSSA----------VNIPVIASGGAGKPEHFVEAFEEGG--A 217 (243)
T ss_pred CHHHHHHHHHHCCCCEEEEeccCCCCCCCCCCHHHHHHHHhh----------CCCCEEEeCCCCCHHHHHHHHHhCC--C
Confidence 4677888888888876566 66555321 101112222221 35789999999 68899988875 4 6
Q ss_pred cEEeecCccccc
Q 024420 82 DAFGIGTYLVTC 93 (268)
Q Consensus 82 d~fGVGT~Lvt~ 93 (268)
|+.-||+.|...
T Consensus 218 dgv~vg~al~~~ 229 (243)
T cd04731 218 DAALAASIFHFG 229 (243)
T ss_pred CEEEEeHHHHcC
Confidence 788899888664
No 89
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=58.96 E-value=11 Score=36.74 Aligned_cols=130 Identities=22% Similarity=0.251 Sum_probs=81.6
Q ss_pred HHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcCCcccEEeec
Q 024420 8 FCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIG 87 (268)
Q Consensus 8 ai~Va~~L~~~G~~l~GVRlDSGDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g~~id~fGVG 87 (268)
..+.+.+|.+.|.++.-|..=-|.-......++++ .+ -++++.|++.|=-+.+....|.+.|+...--|||
T Consensus 109 ~~er~~~L~~agvD~ivID~a~g~s~~~~~~ik~i-k~--------~~~~~~viaGNV~T~e~a~~L~~aGad~vkVGiG 179 (352)
T PF00478_consen 109 DFERAEALVEAGVDVIVIDSAHGHSEHVIDMIKKI-KK--------KFPDVPVIAGNVVTYEGAKDLIDAGADAVKVGIG 179 (352)
T ss_dssp HHHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHHH-HH--------HSTTSEEEEEEE-SHHHHHHHHHTT-SEEEESSS
T ss_pred HHHHHHHHHHcCCCEEEccccCccHHHHHHHHHHH-HH--------hCCCceEEecccCCHHHHHHHHHcCCCEEEEecc
Confidence 56777888888876654444447765555444433 33 2568999999999999999999999877777777
Q ss_pred ------CcccccCCCCccceEEEEeEEC---CccccccCCCCCCCCCCc--cceeeeeccCCCCeeeeEEecCCCC
Q 024420 88 ------TYLVTCYAQAALGCVFKLVEIN---KQPRIKLSEDVSKVSIPC--KKRSYRLYGKEGYPLVDIMTGENEP 152 (268)
Q Consensus 88 ------T~Lvt~~~~p~l~~vyKLve~~---g~P~~K~S~~~~K~t~PG--~K~vyR~~~~~g~~~~D~i~l~~e~ 152 (268)
|+.++..+.|-+..||++.+.. +.|++ +| |-...+| .|.+. .+++--++.-+++..+|.
T Consensus 180 pGsiCtTr~v~GvG~PQ~tAv~~~a~~a~~~~v~iI--AD--GGi~~sGDi~KAla--~GAd~VMlG~llAgt~Es 249 (352)
T PF00478_consen 180 PGSICTTREVTGVGVPQLTAVYECAEAARDYGVPII--AD--GGIRTSGDIVKALA--AGADAVMLGSLLAGTDES 249 (352)
T ss_dssp SSTTBHHHHHHSBSCTHHHHHHHHHHHHHCTTSEEE--EE--SS-SSHHHHHHHHH--TT-SEEEESTTTTTBTTS
T ss_pred CCcccccccccccCCcHHHHHHHHHHHhhhccCcee--ec--CCcCcccceeeeee--ecccceeechhhccCcCC
Confidence 3445577899999999988763 34655 33 4444445 33331 233334444555555663
No 90
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=57.95 E-value=42 Score=31.12 Aligned_cols=37 Identities=19% Similarity=0.342 Sum_probs=28.5
Q ss_pred CeEEEEeCCCC-HHHHHHHhhcCCcccEEeecCcccccC
Q 024420 57 KMSITASNDLN-EETLDALNKQGHEVDAFGIGTYLVTCY 94 (268)
Q Consensus 57 ~vkIi~S~~Ld-e~~I~~l~~~g~~id~fGVGT~Lvt~~ 94 (268)
++.|+++|++. .+.+.++.+.|. .|..++|+.++..+
T Consensus 281 ~iPVi~~Ggi~t~~~a~~~l~~g~-aD~V~igR~~ladP 318 (327)
T cd02803 281 KIPVIAVGGIRDPEVAEEILAEGK-ADLVALGRALLADP 318 (327)
T ss_pred CCCEEEeCCCCCHHHHHHHHHCCC-CCeeeecHHHHhCc
Confidence 46788999987 888888887643 77888888887643
No 91
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=57.82 E-value=75 Score=28.59 Aligned_cols=35 Identities=20% Similarity=0.378 Sum_probs=29.5
Q ss_pred CeEEEEeCCCCHHHHHHHhhcCCcccEEeecCccccc
Q 024420 57 KMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTC 93 (268)
Q Consensus 57 ~vkIi~S~~Lde~~I~~l~~~g~~id~fGVGT~Lvt~ 93 (268)
++.|.+-||++++.+..+.+.|+ |.|=+|+.+..+
T Consensus 173 ~~~I~VdGGI~~~ti~~~~~aGa--d~iVvGsaI~~a 207 (228)
T PTZ00170 173 HLNIQVDGGINLETIDIAADAGA--NVIVAGSSIFKA 207 (228)
T ss_pred cCeEEECCCCCHHHHHHHHHcCC--CEEEEchHHhCC
Confidence 47899999999999999999885 677788887653
No 92
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=57.61 E-value=23 Score=33.95 Aligned_cols=75 Identities=16% Similarity=0.135 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHhhcCCCccEEeeCCCC-----------hHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCC-CHHHHH
Q 024420 5 VPNFCAVALALNDLGYKAVGIRLDSGD-----------LAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDL-NEETLD 72 (268)
Q Consensus 5 v~nai~Va~~L~~~G~~l~GVRlDSGD-----------l~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~L-de~~I~ 72 (268)
...++++++.|.+.|..+..| ..|. ...++.++++.+ . .++.|+++|++ +.+.++
T Consensus 234 ~ee~~~i~~~L~~~GvD~I~V--s~g~~~~~~~~~~~~~~~~~~~ik~~~----------~-~~iPVi~~Ggi~t~e~ae 300 (353)
T cd04735 234 MEDTLALVDKLADKGLDYLHI--SLWDFDRKSRRGRDDNQTIMELVKERI----------A-GRLPLIAVGSINTPDDAL 300 (353)
T ss_pred HHHHHHHHHHHHHcCCCEEEe--ccCccccccccCCcchHHHHHHHHHHh----------C-CCCCEEEECCCCCHHHHH
Confidence 467889999999888766544 1111 111222222221 1 35689999998 799999
Q ss_pred HHhhcCCcccEEeecCcccccC
Q 024420 73 ALNKQGHEVDAFGIGTYLVTCY 94 (268)
Q Consensus 73 ~l~~~g~~id~fGVGT~Lvt~~ 94 (268)
++++.| .|..++|..++..+
T Consensus 301 ~~l~~g--aD~V~~gR~liadP 320 (353)
T cd04735 301 EALETG--ADLVAIGRGLLVDP 320 (353)
T ss_pred HHHHcC--CChHHHhHHHHhCc
Confidence 999876 89999999998743
No 93
>PRK04302 triosephosphate isomerase; Provisional
Probab=56.84 E-value=35 Score=30.34 Aligned_cols=37 Identities=14% Similarity=0.205 Sum_probs=28.9
Q ss_pred CCeEEEEeCCC-CHHHHHHHhhcCCcccEEeecCcccccC
Q 024420 56 EKMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTCY 94 (268)
Q Consensus 56 ~~vkIi~S~~L-de~~I~~l~~~g~~id~fGVGT~Lvt~~ 94 (268)
.++.|++.+|+ +.+.+..+.+.| .|++-|||.++...
T Consensus 172 ~~~pvi~GggI~~~e~~~~~~~~g--adGvlVGsa~l~~~ 209 (223)
T PRK04302 172 PDVKVLCGAGISTGEDVKAALELG--ADGVLLASGVVKAK 209 (223)
T ss_pred CCCEEEEECCCCCHHHHHHHHcCC--CCEEEEehHHhCCc
Confidence 46799999999 666666666555 79999999998753
No 94
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=55.05 E-value=32 Score=31.64 Aligned_cols=54 Identities=22% Similarity=0.281 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcCCcccEEeecCccc
Q 024420 33 AYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLV 91 (268)
Q Consensus 33 ~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g~~id~fGVGT~Lv 91 (268)
......+|+.+.+. ++- --.+++|+..|+++.+-+.++.+++ .+|++.||+.-.
T Consensus 179 ~ev~~~ir~~l~~~---~~~-~~~~~~IlYGGSV~~~N~~~l~~~~-~vDG~LVG~Asl 232 (242)
T cd00311 179 QEVHAFIRKLLAEL---YGE-VAEKVRILYGGSVNPENAAELLAQP-DIDGVLVGGASL 232 (242)
T ss_pred HHHHHHHHHHHHHh---ccc-ccCceeEEECCCCCHHHHHHHhcCC-CCCEEEeehHhh
Confidence 34445567766653 221 2357899999999999999999765 499999998765
No 95
>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO). Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B (6.3.5.4 from EC) catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase [].; GO: 0004066 asparagine synthase (glutamine-hydrolyzing) activity, 0006529 asparagine biosynthetic process; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A 1Q15_D 1Q19_C 1CT9_C 3K32_F.
Probab=54.71 E-value=18 Score=31.27 Aligned_cols=53 Identities=21% Similarity=0.318 Sum_probs=36.5
Q ss_pred HHHHHHHHH-hHhhCCCCCCCeEEEEeCCCCHHHHHHHhhc--CCcccEEeecCcccc
Q 024420 38 EARKFFRTI-EKEFGVPDFEKMSITASNDLNEETLDALNKQ--GHEVDAFGIGTYLVT 92 (268)
Q Consensus 38 ~~R~~ld~~-~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~--g~~id~fGVGT~Lvt 92 (268)
++|+.|+++ ..++. .-.++-|..|||+|=..|..+... +.++..|-+|..-..
T Consensus 1 ~~r~~l~~av~~rl~--~~~~i~~~LSGGlDSs~i~~~~~~~~~~~~~~~t~~~~~~~ 56 (255)
T PF00733_consen 1 ELRELLEEAVARRLR--SDKPIGILLSGGLDSSAIAALAARQGGPPIKTFTIGFEDDD 56 (255)
T ss_dssp HHHHHHHHHHHHHCG--CTSEEEEE--SSHHHHHHHHHHHHTCCSEEEEEEEECSSCC
T ss_pred CHHHHHHHHHHHHHh--cCCCEEEECCCChhHHHHHHHHHHhhCCceeEEEEEcCCCc
Confidence 356666666 44343 236688999999999999999876 457888887766544
No 96
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional
Probab=54.12 E-value=37 Score=35.34 Aligned_cols=36 Identities=17% Similarity=0.298 Sum_probs=28.3
Q ss_pred CCCCeEEEEeCCCCH------HHHHHHhhcCCcccEEeecCc
Q 024420 54 DFEKMSITASNDLNE------ETLDALNKQGHEVDAFGIGTY 89 (268)
Q Consensus 54 G~~~vkIi~S~~Lde------~~I~~l~~~g~~id~fGVGT~ 89 (268)
+..++.|++|+|.+. ..++.|.+.|..+-++|||..
T Consensus 148 nvpKVVILLTDG~sns~~dvleaAq~LR~~GVeI~vIGVG~g 189 (576)
T PTZ00441 148 NAIQLVILMTDGIPNSKYRALEESRKLKDRNVKLAVIGIGQG 189 (576)
T ss_pred CCceEEEEEecCCCCCcccHHHHHHHHHHCCCEEEEEEeCCC
Confidence 455789999999962 234677788999999999973
No 97
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=52.59 E-value=45 Score=31.91 Aligned_cols=37 Identities=19% Similarity=0.275 Sum_probs=30.0
Q ss_pred CeEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccC
Q 024420 57 KMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCY 94 (268)
Q Consensus 57 ~vkIi~S~~Lde~~I~~l~~~g~~id~fGVGT~Lvt~~ 94 (268)
++.|+++|+++.+.++++.+.|. .|..++|..++..+
T Consensus 285 ~ipvi~~G~i~~~~a~~~l~~g~-~D~V~~gR~~ladP 321 (338)
T cd02933 285 KGPLIAAGGYDAESAEAALADGK-ADLVAFGRPFIANP 321 (338)
T ss_pred CCCEEEECCCCHHHHHHHHHcCC-CCEEEeCHhhhhCc
Confidence 35799999999888888887654 78999999888743
No 98
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=52.44 E-value=36 Score=32.55 Aligned_cols=76 Identities=12% Similarity=0.134 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHhhcC-CCccEEe---eC-------------CCC--hHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCC
Q 024420 5 VPNFCAVALALNDLG-YKAVGIR---LD-------------SGD--LAYLSCEARKFFRTIEKEFGVPDFEKMSITASND 65 (268)
Q Consensus 5 v~nai~Va~~L~~~G-~~l~GVR---lD-------------SGD--l~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~ 65 (268)
...++.+++.|.+.| ..+.-|- .. .+. -..+++++++. -++.|+++|+
T Consensus 227 ~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~-------------~~ipvi~~G~ 293 (343)
T cd04734 227 PDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQA-------------VDLPVFHAGR 293 (343)
T ss_pred HHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHH-------------cCCCEEeeCC
Confidence 457899999999887 5654441 10 111 01222233322 2357999999
Q ss_pred C-CHHHHHHHhhcCCcccEEeecCcccccC
Q 024420 66 L-NEETLDALNKQGHEVDAFGIGTYLVTCY 94 (268)
Q Consensus 66 L-de~~I~~l~~~g~~id~fGVGT~Lvt~~ 94 (268)
+ +.+.++++.+.|. .|..++|..++..+
T Consensus 294 i~~~~~~~~~l~~~~-~D~V~~gR~~ladP 322 (343)
T cd04734 294 IRDPAEAEQALAAGH-ADMVGMTRAHIADP 322 (343)
T ss_pred CCCHHHHHHHHHcCC-CCeeeecHHhHhCc
Confidence 8 8899999987654 89999999998754
No 99
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=52.25 E-value=31 Score=35.10 Aligned_cols=96 Identities=16% Similarity=0.269 Sum_probs=65.7
Q ss_pred chHHHHHHHHHHhhcCCCccEEeeCCCCh-HHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcCCccc
Q 024420 4 GVPNFCAVALALNDLGYKAVGIRLDSGDL-AYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVD 82 (268)
Q Consensus 4 Gv~nai~Va~~L~~~G~~l~GVRlDSGDl-~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g~~id 82 (268)
|...+.+.+.+|-+.|.++ |=+||-.- .....+..+.+.+. ++ .++.|++.|=++.+..+.+.+.|+...
T Consensus 239 ~~~~~~~ra~~Lv~aGvd~--i~vd~a~g~~~~~~~~i~~ir~~---~~----~~~~V~aGnV~t~e~a~~li~aGAd~I 309 (502)
T PRK07107 239 NTRDYAERVPALVEAGADV--LCIDSSEGYSEWQKRTLDWIREK---YG----DSVKVGAGNVVDREGFRYLAEAGADFV 309 (502)
T ss_pred ChhhHHHHHHHHHHhCCCe--EeecCcccccHHHHHHHHHHHHh---CC----CCceEEeccccCHHHHHHHHHcCCCEE
Confidence 4556788999999988765 44676321 11222333333332 21 348999999999999999999998765
Q ss_pred EEeecC------cccccCCCCccceEEEEeEE
Q 024420 83 AFGIGT------YLVTCYAQAALGCVFKLVEI 108 (268)
Q Consensus 83 ~fGVGT------~Lvt~~~~p~l~~vyKLve~ 108 (268)
..|+|. +.++....|.+..+|.+++.
T Consensus 310 ~vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a 341 (502)
T PRK07107 310 KVGIGGGSICITREQKGIGRGQATALIEVAKA 341 (502)
T ss_pred EECCCCCcCcccccccCCCccHHHHHHHHHHH
Confidence 567765 45566678888888888763
No 100
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=52.15 E-value=83 Score=27.17 Aligned_cols=64 Identities=28% Similarity=0.282 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcCCc
Q 024420 5 VPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHE 80 (268)
Q Consensus 5 v~nai~Va~~L~~~G~~l~GVRlDSGDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g~~ 80 (268)
..++++++++|.+.|.++.=||..+++-.. ..+.+.+ .++++.|-+..=++.+.+....+.|+.
T Consensus 15 ~~~~~~~~~~l~~~G~~~vev~~~~~~~~~----~i~~l~~--------~~~~~~iGag~v~~~~~~~~a~~~Ga~ 78 (190)
T cd00452 15 AEDALALAEALIEGGIRAIEITLRTPGALE----AIRALRK--------EFPEALIGAGTVLTPEQADAAIAAGAQ 78 (190)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCChhHHH----HHHHHHH--------HCCCCEEEEEeCCCHHHHHHHHHcCCC
Confidence 357889999999999999899988887333 3333333 235678888888889999999887764
No 101
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=52.04 E-value=52 Score=32.24 Aligned_cols=35 Identities=20% Similarity=0.315 Sum_probs=31.2
Q ss_pred eEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccC
Q 024420 58 MSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCY 94 (268)
Q Consensus 58 vkIi~S~~Lde~~I~~l~~~g~~id~fGVGT~Lvt~~ 94 (268)
+.|++.||++.+.+.++.+.| .+++.+|+.+....
T Consensus 163 iPI~a~GGI~~~n~~~~l~aG--Adgv~vGsaI~~~~ 197 (430)
T PRK07028 163 IPIAVAGGLDAETAAKAVAAG--ADIVIVGGNIIKSA 197 (430)
T ss_pred CcEEEECCCCHHHHHHHHHcC--CCEEEEChHHcCCC
Confidence 689999999999999999988 57899999998753
No 102
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=52.03 E-value=1.2e+02 Score=27.74 Aligned_cols=17 Identities=6% Similarity=0.130 Sum_probs=13.5
Q ss_pred CcHHHHHHHHHHHHhcC
Q 024420 213 PTLKDTRERCIKQLEQM 229 (268)
Q Consensus 213 ~sL~~iR~~~~~~l~~l 229 (268)
.+.++|++++++-++.+
T Consensus 200 ~~~~~i~~~a~~~~~~~ 216 (222)
T PRK07114 200 KDYAGIEQKVREALAII 216 (222)
T ss_pred ccHHHHHHHHHHHHHHH
Confidence 57899999988877655
No 103
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=51.71 E-value=57 Score=34.74 Aligned_cols=69 Identities=16% Similarity=0.205 Sum_probs=50.1
Q ss_pred hhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccc
Q 024420 16 NDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (268)
Q Consensus 16 ~~~G~~l~GVRlDSGDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g~~id~fGVGT~Lvt 92 (268)
.+.|.++.+|=-=.++-..+...+.+.|+++ |.++++|++.|.+=+...+.+.+.|. -..|.+||++..
T Consensus 630 ~~~~a~ivvlcs~d~~~~e~~~~l~~~Lk~~-------G~~~v~vl~GG~~~~~~~~~l~~aGv-D~~i~~g~d~~~ 698 (714)
T PRK09426 630 VENDVHVVGVSSLAAGHKTLVPALIEALKKL-------GREDIMVVVGGVIPPQDYDFLYEAGV-AAIFGPGTVIAD 698 (714)
T ss_pred HHcCCCEEEEeccchhhHHHHHHHHHHHHhc-------CCCCcEEEEeCCCChhhHHHHHhCCC-CEEECCCCCHHH
Confidence 3446666666433345566778888888887 87889999998866666788888775 457899998764
No 104
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=51.39 E-value=52 Score=30.30 Aligned_cols=36 Identities=28% Similarity=0.385 Sum_probs=28.2
Q ss_pred eEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccCC
Q 024420 58 MSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYA 95 (268)
Q Consensus 58 vkIi~S~~Lde~~I~~l~~~g~~id~fGVGT~Lvt~~~ 95 (268)
..|..||..+.+.+..+.+.| .|++-|||.++.+.+
T Consensus 213 ~vIaegGI~t~ed~~~~~~~G--ad~vlVGsaI~~~~d 248 (260)
T PRK00278 213 LVVSESGIFTPEDLKRLAKAG--ADAVLVGESLMRADD 248 (260)
T ss_pred EEEEEeCCCCHHHHHHHHHcC--CCEEEECHHHcCCCC
Confidence 345556666899999999887 489999999987544
No 105
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=51.38 E-value=41 Score=32.66 Aligned_cols=74 Identities=15% Similarity=0.233 Sum_probs=50.3
Q ss_pred hHHHHHHHHHHhhcCCCccEEeeCCCC-----------------hHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCC-
Q 024420 5 VPNFCAVALALNDLGYKAVGIRLDSGD-----------------LAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDL- 66 (268)
Q Consensus 5 v~nai~Va~~L~~~G~~l~GVRlDSGD-----------------l~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~L- 66 (268)
+.-++++++.|.+.|..+.-|- .|. ...+++++++. -++.++++|++
T Consensus 251 ~e~~~~~~~~l~~~gvD~l~vs--~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~-------------~~~pvi~~G~i~ 315 (382)
T cd02931 251 LEEGLKAAKILEEAGYDALDVD--AGSYDAWYWNHPPMYQKKGMYLPYCKALKEV-------------VDVPVIMAGRME 315 (382)
T ss_pred HHHHHHHHHHHHHhCCCEEEeC--CCCCcccccccCCccCCcchhHHHHHHHHHH-------------CCCCEEEeCCCC
Confidence 3567899999988887655442 221 11223333332 23479999999
Q ss_pred CHHHHHHHhhcCCcccEEeecCcccccC
Q 024420 67 NEETLDALNKQGHEVDAFGIGTYLVTCY 94 (268)
Q Consensus 67 de~~I~~l~~~g~~id~fGVGT~Lvt~~ 94 (268)
+.+.+.++++.|. .|..|+|..++..+
T Consensus 316 ~~~~~~~~l~~g~-~D~V~~gR~~ladP 342 (382)
T cd02931 316 DPELASEAINEGI-ADMISLGRPLLADP 342 (382)
T ss_pred CHHHHHHHHHcCC-CCeeeechHhHhCc
Confidence 7888999888765 89999999998744
No 106
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=50.28 E-value=30 Score=31.78 Aligned_cols=36 Identities=28% Similarity=0.399 Sum_probs=30.4
Q ss_pred CeEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccC
Q 024420 57 KMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCY 94 (268)
Q Consensus 57 ~vkIi~S~~Lde~~I~~l~~~g~~id~fGVGT~Lvt~~ 94 (268)
+..|-+-||+|.+.+..+.+.| .|.|=.|+.+....
T Consensus 169 ~~~IeVDGGI~~~t~~~~~~AG--ad~~VaGSalF~~~ 204 (220)
T COG0036 169 DILIEVDGGINLETIKQLAAAG--ADVFVAGSALFGAD 204 (220)
T ss_pred CeEEEEeCCcCHHHHHHHHHcC--CCEEEEEEEEeCCc
Confidence 7799999999999999999988 46666788777643
No 107
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=50.11 E-value=15 Score=32.85 Aligned_cols=46 Identities=26% Similarity=0.390 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccc
Q 024420 37 CEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (268)
Q Consensus 37 ~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g~~id~fGVGT~Lvt 92 (268)
+++|+++++. | .++.|.+-||++++.+..+.+.|+ |.|=+||.+..
T Consensus 154 ~~l~~~~~~~-------~-~~~~I~vDGGI~~~~~~~~~~aGa--d~~V~Gs~iF~ 199 (201)
T PF00834_consen 154 RELRKLIPEN-------G-LDFEIEVDGGINEENIKQLVEAGA--DIFVAGSAIFK 199 (201)
T ss_dssp HHHHHHHHHH-------T-CGSEEEEESSESTTTHHHHHHHT----EEEESHHHHT
T ss_pred HHHHHHHHhc-------C-CceEEEEECCCCHHHHHHHHHcCC--CEEEECHHHhC
Confidence 3467777775 5 456999999999999999999985 56667777654
No 108
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=50.06 E-value=55 Score=30.97 Aligned_cols=37 Identities=16% Similarity=0.275 Sum_probs=27.6
Q ss_pred CeEEEEeCCC-CHHHHHHHhhcCCcccEEeecCcccccC
Q 024420 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTCY 94 (268)
Q Consensus 57 ~vkIi~S~~L-de~~I~~l~~~g~~id~fGVGT~Lvt~~ 94 (268)
++.|++++++ +.+.++++.+.|. .|..++|..++..+
T Consensus 292 ~iPVi~~G~i~t~~~a~~~l~~g~-aD~V~lgR~~iadP 329 (338)
T cd04733 292 KTPLMVTGGFRTRAAMEQALASGA-VDGIGLARPLALEP 329 (338)
T ss_pred CCCEEEeCCCCCHHHHHHHHHcCC-CCeeeeChHhhhCc
Confidence 4568888888 6777888887665 78888888887644
No 109
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=49.90 E-value=49 Score=32.71 Aligned_cols=36 Identities=17% Similarity=0.309 Sum_probs=30.8
Q ss_pred CeEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccC
Q 024420 57 KMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCY 94 (268)
Q Consensus 57 ~vkIi~S~~Lde~~I~~l~~~g~~id~fGVGT~Lvt~~ 94 (268)
++.|.++||++.+.+..+.+.|+ |.|-+|+.+..+.
T Consensus 330 ~~~I~VdGGI~~eti~~l~~aGA--DivVVGsaIf~a~ 365 (391)
T PRK13307 330 KILVAVAGGVRVENVEEALKAGA--DILVVGRAITKSK 365 (391)
T ss_pred CCcEEEECCcCHHHHHHHHHcCC--CEEEEeHHHhCCC
Confidence 57899999999999999998875 6889999987643
No 110
>PRK08508 biotin synthase; Provisional
Probab=48.54 E-value=1.1e+02 Score=28.15 Aligned_cols=70 Identities=19% Similarity=0.254 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHhhcCCCccEEeeCCCC------hHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEe-CCCCHHHHHHHhhc
Q 024420 5 VPNFCAVALALNDLGYKAVGIRLDSGD------LAYLSCEARKFFRTIEKEFGVPDFEKMSITAS-NDLNEETLDALNKQ 77 (268)
Q Consensus 5 v~nai~Va~~L~~~G~~l~GVRlDSGD------l~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S-~~Lde~~I~~l~~~ 77 (268)
....++.|+++.+.|..-..+ .+||. +.++..-++.+ .+. +.++.+.+| |-++++.+++|.+.
T Consensus 42 ~eeI~~~a~~a~~~g~~~~~l-v~sg~~~~~~~~e~~~ei~~~i-k~~--------~p~l~i~~s~G~~~~e~l~~Lk~a 111 (279)
T PRK08508 42 IEQIVQEAKMAKANGALGFCL-VTSGRGLDDKKLEYVAEAAKAV-KKE--------VPGLHLIACNGTASVEQLKELKKA 111 (279)
T ss_pred HHHHHHHHHHHHHCCCCEEEE-EeccCCCCcccHHHHHHHHHHH-Hhh--------CCCcEEEecCCCCCHHHHHHHHHc
Confidence 456778888877777643333 35554 22332222322 221 245677654 66799999999988
Q ss_pred CCcccEEee
Q 024420 78 GHEVDAFGI 86 (268)
Q Consensus 78 g~~id~fGV 86 (268)
|. |++.+
T Consensus 112 Gl--d~~~~ 118 (279)
T PRK08508 112 GI--FSYNH 118 (279)
T ss_pred CC--CEEcc
Confidence 85 44444
No 111
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=48.44 E-value=1.2e+02 Score=27.37 Aligned_cols=64 Identities=22% Similarity=0.168 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcCCc
Q 024420 5 VPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHE 80 (268)
Q Consensus 5 v~nai~Va~~L~~~G~~l~GVRlDSGDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g~~ 80 (268)
...++.++++|.+.|.+..=|-++|.+-....++++ + -++++.|=+..=+|.+..+...+.|+.
T Consensus 19 ~e~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~----~--------~~~~~~vGAGTVl~~~~a~~a~~aGA~ 82 (204)
T TIGR01182 19 VDDALPLAKALIEGGLRVLEVTLRTPVALDAIRLLR----K--------EVPDALIGAGTVLNPEQLRQAVDAGAQ 82 (204)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHH----H--------HCCCCEEEEEeCCCHHHHHHHHHcCCC
Confidence 457889999999999999899999977444333333 3 135678888888899988888887763
No 112
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=48.30 E-value=50 Score=28.76 Aligned_cols=38 Identities=21% Similarity=0.128 Sum_probs=30.4
Q ss_pred CCeEEEEeCCC-CHHHHHHHhhcCCcccEEeecCcccccC
Q 024420 56 EKMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTCY 94 (268)
Q Consensus 56 ~~vkIi~S~~L-de~~I~~l~~~g~~id~fGVGT~Lvt~~ 94 (268)
.++.|+++|++ +.+.+.++.+.+ -.|+..+|+.+...+
T Consensus 182 ~~ipvi~~Ggi~~~~d~~~~l~~~-gad~V~igr~~l~~P 220 (231)
T cd02801 182 VSIPVIANGDIFSLEDALRCLEQT-GVDGVMIGRGALGNP 220 (231)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHhc-CCCEEEEcHHhHhCC
Confidence 45789999999 788898988763 278999999887743
No 113
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=47.96 E-value=29 Score=33.26 Aligned_cols=35 Identities=14% Similarity=0.173 Sum_probs=25.3
Q ss_pred eEEEEeCCC-CHHHHHHHhhcCCcccEEeecCccccc
Q 024420 58 MSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTC 93 (268)
Q Consensus 58 vkIi~S~~L-de~~I~~l~~~g~~id~fGVGT~Lvt~ 93 (268)
+.|+++|++ +.+.++++++.|. .|..++|.-++..
T Consensus 276 ipVi~~G~i~~~~~a~~~l~~g~-~D~V~~gR~~iad 311 (337)
T PRK13523 276 IATGAVGLITSGAQAEEILQNNR-ADLIFIGRELLRN 311 (337)
T ss_pred CcEEEeCCCCCHHHHHHHHHcCC-CChHHhhHHHHhC
Confidence 467788887 5777888877664 6777777777764
No 114
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=47.80 E-value=88 Score=30.00 Aligned_cols=73 Identities=14% Similarity=0.236 Sum_probs=47.5
Q ss_pred cCCCccEEeeC----CCChHHHHHHHHHHHHHHhHhhCCCC----------------------CCCeEEE--EeCCC-CH
Q 024420 18 LGYKAVGIRLD----SGDLAYLSCEARKFFRTIEKEFGVPD----------------------FEKMSIT--ASNDL-NE 68 (268)
Q Consensus 18 ~G~~l~GVRlD----SGDl~~ls~~~R~~ld~~~~~l~~~G----------------------~~~vkIi--~S~~L-de 68 (268)
.|..+ ||.= +||..+-.+.+|.+..+...-.+... ..++.++ +.||+ ++
T Consensus 140 ~Gadm--I~Ttge~gtg~v~~av~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~elL~ei~~~~~iPVV~~AeGGI~TP 217 (293)
T PRK04180 140 EGAAM--IRTKGEAGTGNVVEAVRHMRQINGEIRRLTSMSEDELYTAAKELQAPYELVKEVAELGRLPVVNFAAGGIATP 217 (293)
T ss_pred CCCCe--eeccCCCCCccHHHHHHHHHHHHHHHHHHhCCCHHHHHhhccccCCCHHHHHHHHHhCCCCEEEEEeCCCCCH
Confidence 45544 5655 88988888888887776643222211 0134555 88888 88
Q ss_pred HHHHHHhhcCCcccEEeecCcccccC
Q 024420 69 ETLDALNKQGHEVDAFGIGTYLVTCY 94 (268)
Q Consensus 69 ~~I~~l~~~g~~id~fGVGT~Lvt~~ 94 (268)
+.+..+.+.| .+++-||+.+..+.
T Consensus 218 edaa~vme~G--AdgVaVGSaI~ks~ 241 (293)
T PRK04180 218 ADAALMMQLG--ADGVFVGSGIFKSG 241 (293)
T ss_pred HHHHHHHHhC--CCEEEEcHHhhcCC
Confidence 8888888766 56667888887553
No 115
>PRK06052 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=46.59 E-value=22 Score=34.72 Aligned_cols=42 Identities=17% Similarity=0.290 Sum_probs=37.6
Q ss_pred ccccccccccccCCCCcHHHHHHHHHHHHhcCChhhhhccCCc
Q 024420 198 VFGDVQFLNKRREDLPTLKDTRERCIKQLEQMRPDHMRRLNPT 240 (268)
Q Consensus 198 ~~~~~~~~~~~~~~~~sL~~iR~~~~~~l~~l~~~~~r~~~p~ 240 (268)
+|+|.++|-+++...+|.+++.++..+.++.+|++ +-..||+
T Consensus 273 ~~~~~~~~~~~~~~VEsveEI~~rI~~ale~i~~e-~lwVNPD 314 (344)
T PRK06052 273 AWKDKEYLQEIVTELETPEVIKKRLEKAYSIFGDR-IKYVGPD 314 (344)
T ss_pred cccchhhccccCCCCCCHHHHHHHHHHHHHhCChh-hEEECCC
Confidence 56788999999999999999999999999999876 6678998
No 116
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=46.45 E-value=45 Score=30.53 Aligned_cols=36 Identities=28% Similarity=0.438 Sum_probs=28.9
Q ss_pred CCCCeEEEEeCCCCHHHHHHHhhcCCcccEEeecCc-ccc
Q 024420 54 DFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTY-LVT 92 (268)
Q Consensus 54 G~~~vkIi~S~~Lde~~I~~l~~~g~~id~fGVGT~-Lvt 92 (268)
|+ ++.|-+-||++++.|..+.+.|+ |.|=+||+ +..
T Consensus 167 ~~-~~~IeVDGGI~~~~i~~~~~aGa--d~~V~Gss~iF~ 203 (229)
T PRK09722 167 GL-EYLIEVDGSCNQKTYEKLMEAGA--DVFIVGTSGLFN 203 (229)
T ss_pred CC-CeEEEEECCCCHHHHHHHHHcCC--CEEEEChHHHcC
Confidence 55 47999999999999999999884 56667865 653
No 117
>PLN02334 ribulose-phosphate 3-epimerase
Probab=46.43 E-value=27 Score=31.15 Aligned_cols=35 Identities=14% Similarity=0.322 Sum_probs=30.2
Q ss_pred CeEEEEeCCCCHHHHHHHhhcCCcccEEeecCccccc
Q 024420 57 KMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTC 93 (268)
Q Consensus 57 ~vkIi~S~~Lde~~I~~l~~~g~~id~fGVGT~Lvt~ 93 (268)
+..|++-||++++.+.++.+.| +|++=||+.+...
T Consensus 174 ~~~I~a~GGI~~e~i~~l~~aG--ad~vvvgsai~~~ 208 (229)
T PLN02334 174 ELDIEVDGGVGPSTIDKAAEAG--ANVIVAGSAVFGA 208 (229)
T ss_pred CCcEEEeCCCCHHHHHHHHHcC--CCEEEEChHHhCC
Confidence 4579999999999999999887 5888899998764
No 118
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=46.32 E-value=69 Score=28.32 Aligned_cols=32 Identities=13% Similarity=0.176 Sum_probs=24.1
Q ss_pred CeEEEEeCCCC-HHHHHH-HhhcCCcccEEeecCcc
Q 024420 57 KMSITASNDLN-EETLDA-LNKQGHEVDAFGIGTYL 90 (268)
Q Consensus 57 ~vkIi~S~~Ld-e~~I~~-l~~~g~~id~fGVGT~L 90 (268)
++.|+++||+. .+.+.+ +.+.| +++.-|||.|
T Consensus 197 ~ipvia~GGi~s~~di~~~l~~~g--adgV~vg~a~ 230 (232)
T TIGR03572 197 SIPVIALGGAGSLDDLVEVALEAG--ASAVAAASLF 230 (232)
T ss_pred CCCEEEECCCCCHHHHHHHHHHcC--CCEEEEehhh
Confidence 46899999987 667777 55554 6788888876
No 119
>PF15560 Imm8: Immunity protein 8
Probab=46.16 E-value=22 Score=30.23 Aligned_cols=63 Identities=21% Similarity=0.189 Sum_probs=42.3
Q ss_pred ChHHHHHHHHHHHHHHhHhhCCCCCCCeE--EEEeCCCCHH-------HHHHHhhcCCcccEEeecCccccc
Q 024420 31 DLAYLSCEARKFFRTIEKEFGVPDFEKMS--ITASNDLNEE-------TLDALNKQGHEVDAFGIGTYLVTC 93 (268)
Q Consensus 31 Dl~~ls~~~R~~ld~~~~~l~~~G~~~vk--Ii~S~~Lde~-------~I~~l~~~g~~id~fGVGT~Lvt~ 93 (268)
++..+++++|+.|.+.=.-+...|+.+++ +++|||+.+| ..+.+...+.=+..|.+-.+=.|+
T Consensus 18 ~~~~~ir~mRk~lKk~F~~~~~e~l~k~kI~l~~sGdvS~Y~~~sGIyq~rY~~kkkefv~~fcid~~~W~s 89 (133)
T PF15560_consen 18 NLHSLIREMRKSLKKQFESIEFEGLDKIKINLYFSGDVSSYCDKSGIYQCRYFSKKKEFVVEFCIDRNYWTS 89 (133)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHhhhhhEeEEEEEcCchhhhcCCCCcchhHHHHhhhheeEEEEeccccccC
Confidence 56788999999999885556667888866 5789999876 344444444334455554444443
No 120
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=45.51 E-value=87 Score=30.64 Aligned_cols=47 Identities=26% Similarity=0.349 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhHhhCCCCC-CCeEEEEeCCC-CHHHHHHHhhcCCcccEEeecCcccc
Q 024420 37 CEARKFFRTIEKEFGVPDF-EKMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVT 92 (268)
Q Consensus 37 ~~~R~~ld~~~~~l~~~G~-~~vkIi~S~~L-de~~I~~l~~~g~~id~fGVGT~Lvt 92 (268)
.++++.+.+. |+ .++.|++||++ +...+......| .|..++||.+..
T Consensus 271 ~~v~~~~~~~-------~~~~~i~viasGGI~~g~Dv~kalaLG--Ad~V~ig~~~l~ 319 (392)
T cd02808 271 ARAHQALVKN-------GLRDRVSLIASGGLRTGADVAKALALG--ADAVGIGTAALI 319 (392)
T ss_pred HHHHHHHHHc-------CCCCCCeEEEECCCCCHHHHHHHHHcC--CCeeeechHHHH
Confidence 3455555553 33 35899999999 888899998888 678899999986
No 121
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=45.49 E-value=80 Score=28.77 Aligned_cols=35 Identities=17% Similarity=0.212 Sum_probs=30.1
Q ss_pred CeEEEEeCCCC-HHHHHHHhhcCCcccEEeecCccccc
Q 024420 57 KMSITASNDLN-EETLDALNKQGHEVDAFGIGTYLVTC 93 (268)
Q Consensus 57 ~vkIi~S~~Ld-e~~I~~l~~~g~~id~fGVGT~Lvt~ 93 (268)
++.|+++||+. .+.+.++...| .|..+|||.++..
T Consensus 243 ~ipiia~GGI~~~~da~~~l~~G--Ad~V~vg~a~~~~ 278 (289)
T cd02810 243 DIPIIGVGGIDSGEDVLEMLMAG--ASAVQVATALMWD 278 (289)
T ss_pred CCCEEEECCCCCHHHHHHHHHcC--ccHheEcHHHHhc
Confidence 67999999996 78888888888 7889999998763
No 122
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=45.44 E-value=69 Score=30.49 Aligned_cols=131 Identities=23% Similarity=0.303 Sum_probs=74.0
Q ss_pred HHHHHHHHHHhhcCCCccEEeeCC--CChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcCCcccE
Q 024420 6 PNFCAVALALNDLGYKAVGIRLDS--GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDA 83 (268)
Q Consensus 6 ~nai~Va~~L~~~G~~l~GVRlDS--GDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g~~id~ 83 (268)
+++.+.+.+|-+.|.+. |=+|+ |+... ..++.+.+.+. ++++.|++.+-.+.+....+.+.|+....
T Consensus 93 ~~~~~~~~~l~eagv~~--I~vd~~~G~~~~-~~~~i~~ik~~--------~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~ 161 (325)
T cd00381 93 EDDKERAEALVEAGVDV--IVIDSAHGHSVY-VIEMIKFIKKK--------YPNVDVIAGNVVTAEAARDLIDAGADGVK 161 (325)
T ss_pred hhHHHHHHHHHhcCCCE--EEEECCCCCcHH-HHHHHHHHHHH--------CCCceEEECCCCCHHHHHHHHhcCCCEEE
Confidence 35566677777777553 44565 55432 22333344443 24689999999999999999999986655
Q ss_pred Eeec------CcccccCCCCccceEEEEeEE-C--CccccccCCCCCCCCCCc-cceeeeeccCCCCeeeeEEecCCCC
Q 024420 84 FGIG------TYLVTCYAQAALGCVFKLVEI-N--KQPRIKLSEDVSKVSIPC-KKRSYRLYGKEGYPLVDIMTGENEP 152 (268)
Q Consensus 84 fGVG------T~Lvt~~~~p~l~~vyKLve~-~--g~P~~K~S~~~~K~t~PG-~K~vyR~~~~~g~~~~D~i~l~~e~ 152 (268)
-|+| |...+....|.+..++.+.+. + +.|++ .+ |-...|+ ....+. .+.++-++.-.+...+|.
T Consensus 162 vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVI--A~--GGI~~~~di~kAla-~GA~~VmiGt~fa~t~Es 235 (325)
T cd00381 162 VGIGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVPVI--AD--GGIRTSGDIVKALA-AGADAVMLGSLLAGTDES 235 (325)
T ss_pred ECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCCcEE--ec--CCCCCHHHHHHHHH-cCCCEEEecchhcccccC
Confidence 5554 333334456777666665543 2 35665 22 3344333 222222 345555555555555553
No 123
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=44.31 E-value=25 Score=31.81 Aligned_cols=33 Identities=18% Similarity=0.230 Sum_probs=28.7
Q ss_pred eEEEEeCCC-CHHHHHHHhhcCCcccEEeecCcccc
Q 024420 58 MSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVT 92 (268)
Q Consensus 58 vkIi~S~~L-de~~I~~l~~~g~~id~fGVGT~Lvt 92 (268)
..|++.+|+ +.+.+..+.+.| .|+|=|||.++.
T Consensus 186 ~~i~v~gGI~~~e~i~~~~~~g--aD~vvvGSai~~ 219 (244)
T PRK13125 186 KYLVVGFGLDSPEDARDALSAG--ADGVVVGTAFIE 219 (244)
T ss_pred CCEEEeCCcCCHHHHHHHHHcC--CCEEEECHHHHH
Confidence 358999999 999999998877 678999999985
No 124
>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta sub-unit. Each sub-unit has a large extracellular portion, a single transmembrane segment and a short cytoplasmic domain. The N-terminal domains of the alpha and beta subunits associate to form the integrin headpiece, which contains the ligand binding site, whereas the C-terminal segments traverse the plasma membrane and mediate interaction with the cytoskeleton and with signalling proteins.The VWA domains present in the alpha subunits of integrins seem to be a chordate specific radiation of the gene family being found only in vertebrates. They mediate protein-protein interactions.
Probab=43.92 E-value=43 Score=28.35 Aligned_cols=38 Identities=16% Similarity=0.298 Sum_probs=29.9
Q ss_pred CCCCCeEEEEeCCCC------HHHHHHHhhcCCcccEEeecCcc
Q 024420 53 PDFEKMSITASNDLN------EETLDALNKQGHEVDAFGIGTYL 90 (268)
Q Consensus 53 ~G~~~vkIi~S~~Ld------e~~I~~l~~~g~~id~fGVGT~L 90 (268)
++.+++-|+.++|.+ +..+..+.+.|..+-+.|||+..
T Consensus 101 ~~~~kv~illTDG~~~~~~~~~~~~~~~k~~gv~v~~Vgvg~~~ 144 (177)
T cd01469 101 KDATKVLVVITDGESHDDPLLKDVIPQAEREGIIRYAIGVGGHF 144 (177)
T ss_pred CCCCeEEEEEeCCCCCCccccHHHHHHHHHCCcEEEEEEecccc
Confidence 356778999999986 34567777789899999999874
No 125
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=43.76 E-value=31 Score=32.94 Aligned_cols=76 Identities=18% Similarity=0.243 Sum_probs=49.8
Q ss_pred hHHHHHHHHHHhhcCCCccEE-------ee--C---CC--ChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCC-CHH
Q 024420 5 VPNFCAVALALNDLGYKAVGI-------RL--D---SG--DLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDL-NEE 69 (268)
Q Consensus 5 v~nai~Va~~L~~~G~~l~GV-------Rl--D---SG--Dl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~L-de~ 69 (268)
...++.+++.|.+.|..+.-| |. + ++ ....++++++ ++ .++.|+++|++ +.+
T Consensus 223 ~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik----~~---------v~iPVi~~G~i~~~~ 289 (353)
T cd02930 223 WEEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLK----RA---------VDIPVIASNRINTPE 289 (353)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHH----Hh---------CCCCEEEcCCCCCHH
Confidence 456889999999888554433 11 1 11 1122222222 22 34589999998 788
Q ss_pred HHHHHhhcCCcccEEeecCcccccC
Q 024420 70 TLDALNKQGHEVDAFGIGTYLVTCY 94 (268)
Q Consensus 70 ~I~~l~~~g~~id~fGVGT~Lvt~~ 94 (268)
.++++.+.|. +|..++|..++..+
T Consensus 290 ~a~~~i~~g~-~D~V~~gR~~l~dP 313 (353)
T cd02930 290 VAERLLADGD-ADMVSMARPFLADP 313 (353)
T ss_pred HHHHHHHCCC-CChhHhhHHHHHCc
Confidence 8999988765 89999999998754
No 126
>PRK08005 epimerase; Validated
Probab=43.43 E-value=35 Score=30.82 Aligned_cols=33 Identities=21% Similarity=0.202 Sum_probs=28.2
Q ss_pred EEEEeCCCCHHHHHHHhhcCCcccEEeecCccccc
Q 024420 59 SITASNDLNEETLDALNKQGHEVDAFGIGTYLVTC 93 (268)
Q Consensus 59 kIi~S~~Lde~~I~~l~~~g~~id~fGVGT~Lvt~ 93 (268)
.|-+-||+|++.|..+.+.|+ |.|=+||.+...
T Consensus 165 ~I~VDGGI~~~~i~~l~~aGa--d~~V~GsaiF~~ 197 (210)
T PRK08005 165 ECWADGGITLRAARLLAAAGA--QHLVIGRALFTT 197 (210)
T ss_pred CEEEECCCCHHHHHHHHHCCC--CEEEEChHhhCC
Confidence 599999999999999999986 567778888753
No 127
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=43.42 E-value=96 Score=27.09 Aligned_cols=37 Identities=22% Similarity=0.368 Sum_probs=30.5
Q ss_pred CCeEEEEeCCCC-HHHHHHHhhcCCcccEEeecCcccccC
Q 024420 56 EKMSITASNDLN-EETLDALNKQGHEVDAFGIGTYLVTCY 94 (268)
Q Consensus 56 ~~vkIi~S~~Ld-e~~I~~l~~~g~~id~fGVGT~Lvt~~ 94 (268)
.++.+++++|++ .+.+.++.+.| .+++-||+.|+...
T Consensus 171 ~~~pvia~gGI~s~edi~~~~~~G--a~gvivGsai~~~~ 208 (217)
T cd00331 171 KDVILVSESGISTPEDVKRLAEAG--ADAVLIGESLMRAP 208 (217)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHcC--CCEEEECHHHcCCC
Confidence 356899999995 59999999877 58889999998754
No 128
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=42.84 E-value=1.3e+02 Score=25.85 Aligned_cols=63 Identities=16% Similarity=0.131 Sum_probs=39.5
Q ss_pred HHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcCCcccEEe
Q 024420 13 LALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFG 85 (268)
Q Consensus 13 ~~L~~~G~~l~GVRlDSGDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g~~id~fG 85 (268)
.++++.|+++.- .++.+.......+..++.. +--+.-|+.+...+...++.+.+.|.|+..|+
T Consensus 28 ~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~--------~~~dgiii~~~~~~~~~~~~~~~~~ipvV~~~ 90 (270)
T cd06294 28 AVANENGYDISL--ATGKNEEELLEEVKKMIQQ--------KRVDGFILLYSREDDPIIDYLKEEKFPFVVIG 90 (270)
T ss_pred HHHHHCCCEEEE--ecCCCcHHHHHHHHHHHHH--------cCcCEEEEecCcCCcHHHHHHHhcCCCEEEEC
Confidence 445567877642 3555555555666666655 32354566655566677788888888877775
No 129
>PLN02429 triosephosphate isomerase
Probab=42.69 E-value=56 Score=31.51 Aligned_cols=55 Identities=18% Similarity=0.285 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHH-hHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccc
Q 024420 33 AYLSCEARKFFRTI-EKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (268)
Q Consensus 33 ~~ls~~~R~~ld~~-~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g~~id~fGVGT~Lvt 92 (268)
.+....+|++|.+. +.+. -++++|+..|+++..-+.++..+ ..+|+|.||+.-..
T Consensus 242 ~~v~~~IR~~l~~~~~~~v----a~~irILYGGSV~~~N~~el~~~-~diDG~LVGgASL~ 297 (315)
T PLN02429 242 QEVHVAVRGWLKKNVSEEV----ASKTRIIYGGSVNGGNSAELAKE-EDIDGFLVGGASLK 297 (315)
T ss_pred HHHHHHHHHHHHHHhhhhh----ccCceEEEcCccCHHHHHHHhcC-CCCCEEEeecceec
Confidence 34444567776653 2111 25689999999999999999854 35999999998764
No 130
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=42.58 E-value=1.3e+02 Score=29.16 Aligned_cols=71 Identities=13% Similarity=0.279 Sum_probs=54.7
Q ss_pred CCCccEEeeCCCChHHHH-HHHHHHHHHHhHhhCCCCCCCeEEEEe-CCCCHHHHHHHhhcCCcccEEeecCc
Q 024420 19 GYKAVGIRLDSGDLAYLS-CEARKFFRTIEKEFGVPDFEKMSITAS-NDLNEETLDALNKQGHEVDAFGIGTY 89 (268)
Q Consensus 19 G~~l~GVRlDSGDl~~ls-~~~R~~ld~~~~~l~~~G~~~vkIi~S-~~Lde~~I~~l~~~g~~id~fGVGT~ 89 (268)
|.++.-|-+=-|+|..|+ .++.++++.....|....-..+.+-+. ++++.+.++.|.+.|....++||=|.
T Consensus 71 ~~~i~siy~GGGTPs~L~~~~L~~ll~~i~~~~~~~~~~eit~E~~p~~~~~e~L~~l~~~GvnrisiGvQS~ 143 (394)
T PRK08898 71 GRQVHTVFIGGGTPSLLSAAGLDRLLSDVRALLPLDPDAEITLEANPGTFEAEKFAQFRASGVNRLSIGIQSF 143 (394)
T ss_pred CCceeEEEECCCCcCCCCHHHHHHHHHHHHHhCCCCCCCeEEEEECCCCCCHHHHHHHHHcCCCeEEEecccC
Confidence 345667788889988774 457777877777776655556777765 78999999999999988888988764
No 131
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=42.25 E-value=82 Score=27.36 Aligned_cols=35 Identities=9% Similarity=0.155 Sum_probs=27.5
Q ss_pred CCCeEEEEeCCCCH--------HHHHHHhhcCCcccEEeecCc
Q 024420 55 FEKMSITASNDLNE--------ETLDALNKQGHEVDAFGIGTY 89 (268)
Q Consensus 55 ~~~vkIi~S~~Lde--------~~I~~l~~~g~~id~fGVGT~ 89 (268)
.+++-|+++||-+- ...+.++++|..+-+.|||+.
T Consensus 108 ~~kv~IllTDG~s~~~~~~~~~~~a~~lk~~gV~i~~vGiG~~ 150 (192)
T cd01473 108 APKVTMLFTDGNDTSASKKELQDISLLYKEENVKLLVVGVGAA 150 (192)
T ss_pred CCeEEEEEecCCCCCcchhhHHHHHHHHHHCCCEEEEEEeccc
Confidence 57889999999873 224467788999999999963
No 132
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=41.95 E-value=68 Score=29.69 Aligned_cols=54 Identities=17% Similarity=0.227 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccc
Q 024420 34 YLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (268)
Q Consensus 34 ~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g~~id~fGVGT~Lvt 92 (268)
.....+|+.+.+. ++ .--++++|+..|+++..-+.++..+ ..+|++.||+.-..
T Consensus 184 ~v~~~Ir~~l~~~---~~-~~~~~~~IlYGGSV~~~N~~~l~~~-~~vDG~LVG~Asl~ 237 (250)
T PRK00042 184 EVHAFIRAVLAEL---YG-EVAEKVRILYGGSVKPDNAAELMAQ-PDIDGALVGGASLK 237 (250)
T ss_pred HHHHHHHHHHHHh---cc-cccCCceEEEcCCCCHHHHHHHhcC-CCCCEEEEeeeeec
Confidence 4444466666543 33 2235689999999999999999754 34999999987653
No 133
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=41.61 E-value=1.6e+02 Score=28.73 Aligned_cols=80 Identities=15% Similarity=0.323 Sum_probs=55.2
Q ss_pred HHHHHHhh---cCCCccEEeeCCCChHHHH-HHHHHHHHHHhHhhCCCCCCCeEEEEe-CCCCHHHHHHHhhcCCcccEE
Q 024420 10 AVALALND---LGYKAVGIRLDSGDLAYLS-CEARKFFRTIEKEFGVPDFEKMSITAS-NDLNEETLDALNKQGHEVDAF 84 (268)
Q Consensus 10 ~Va~~L~~---~G~~l~GVRlDSGDl~~ls-~~~R~~ld~~~~~l~~~G~~~vkIi~S-~~Lde~~I~~l~~~g~~id~f 84 (268)
++.++++. .+..+.-|-+-.|.+..++ .+++++++.....+++.+-..+.+-+. ++++.+.++.|.+.|..-.++
T Consensus 52 ~L~~Ei~~~~~~~~~i~~iy~GGGTps~l~~~~l~~ll~~i~~~~~~~~~~eit~E~~P~~lt~e~l~~l~~~Gvnrisl 131 (400)
T PRK07379 52 VLCQEIAITPSFGQPLQTVFFGGGTPSLLSVEQLERILTTLDQRFGIAPDAEISLEIDPGTFDLEQLQGYRSLGVNRVSL 131 (400)
T ss_pred HHHHHHHHhhccCCceeEEEECCCccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEE
Confidence 45555543 2345667788888887664 457778877766666554334444432 689999999999999888888
Q ss_pred eecCc
Q 024420 85 GIGTY 89 (268)
Q Consensus 85 GVGT~ 89 (268)
||=|.
T Consensus 132 GvQS~ 136 (400)
T PRK07379 132 GVQAF 136 (400)
T ss_pred EcccC
Confidence 88664
No 134
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=41.04 E-value=78 Score=29.94 Aligned_cols=34 Identities=21% Similarity=0.174 Sum_probs=28.4
Q ss_pred CeEEEEeCCC-CHHHHHHHhhcCCcccEEeecCcccc
Q 024420 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVT 92 (268)
Q Consensus 57 ~vkIi~S~~L-de~~I~~l~~~g~~id~fGVGT~Lvt 92 (268)
++.|+++||+ +.+.+.++...| .|...|||.++.
T Consensus 280 ~ipIi~~GGI~t~~da~e~l~aG--Ad~V~vg~~~~~ 314 (327)
T cd04738 280 KIPIIGVGGISSGEDAYEKIRAG--ASLVQLYTGLVY 314 (327)
T ss_pred CCcEEEECCCCCHHHHHHHHHcC--CCHHhccHHHHh
Confidence 5789999999 888899998877 677888888764
No 135
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=39.87 E-value=1.2e+02 Score=27.43 Aligned_cols=31 Identities=16% Similarity=0.268 Sum_probs=20.8
Q ss_pred CeEEEEeCCC-CHHHHHHHhhcCCcccEEeecCc
Q 024420 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTY 89 (268)
Q Consensus 57 ~vkIi~S~~L-de~~I~~l~~~g~~id~fGVGT~ 89 (268)
++.|+++||+ +.+.+.++...| .|+.-||+.
T Consensus 191 ~ipVIgnGgI~s~eda~~~l~~G--aD~VmiGR~ 222 (233)
T cd02911 191 ELFIIGNNSVTTIESAKEMFSYG--ADMVSVARA 222 (233)
T ss_pred CCEEEEECCcCCHHHHHHHHHcC--CCEEEEcCC
Confidence 4567777777 677777777666 555556655
No 136
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=39.83 E-value=33 Score=27.94 Aligned_cols=31 Identities=23% Similarity=0.379 Sum_probs=25.3
Q ss_pred CCeEEEEeCCCCH-HHHHHHhhcCCcccEEeecC
Q 024420 56 EKMSITASNDLNE-ETLDALNKQGHEVDAFGIGT 88 (268)
Q Consensus 56 ~~vkIi~S~~Lde-~~I~~l~~~g~~id~fGVGT 88 (268)
.++.|+++||++. +.+.++.+.| .|+++||+
T Consensus 169 ~~~pi~~~GGi~~~~~~~~~~~~G--ad~v~vgs 200 (200)
T cd04722 169 SKVPVIAGGGINDPEDAAEALALG--ADGVIVGS 200 (200)
T ss_pred CCCCEEEECCCCCHHHHHHHHHhC--CCEEEecC
Confidence 3568999999988 8898888877 77888875
No 137
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=39.06 E-value=98 Score=26.68 Aligned_cols=38 Identities=18% Similarity=0.193 Sum_probs=23.1
Q ss_pred HHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHH
Q 024420 7 NFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFR 44 (268)
Q Consensus 7 nai~Va~~L~~~G~~l~GVRlDSGDl~~ls~~~R~~ld 44 (268)
|+-.++..|.+.|+++..+++=.-|...+...+++.++
T Consensus 20 n~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~ 57 (170)
T cd00885 20 NAAFLAKELAELGIEVYRVTVVGDDEDRIAEALRRASE 57 (170)
T ss_pred HHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHh
Confidence 45556666777777766666555565555555555543
No 138
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=38.88 E-value=78 Score=32.50 Aligned_cols=57 Identities=18% Similarity=0.210 Sum_probs=42.3
Q ss_pred ChHHHHHHHHHHHHHH-hHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcC---------------CcccEEeecCc
Q 024420 31 DLAYLSCEARKFFRTI-EKEFGVPDFEKMSITASNDLNEETLDALNKQG---------------HEVDAFGIGTY 89 (268)
Q Consensus 31 Dl~~ls~~~R~~ld~~-~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g---------------~~id~fGVGT~ 89 (268)
+......++|+.|.++ ..++-.+ ..+-++.|||||=..|..+..+- .++.+|-||..
T Consensus 204 ~~~~~~~~lr~~L~~aV~~rl~sd--vpvGv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~~~~~l~tfsig~~ 276 (554)
T PRK09431 204 DNVTDKNELRDALEAAVKKRLMSD--VPYGVLLSGGLDSSLISAIAKKYAARRIEDDERSEAWWPQLHSFAVGLE 276 (554)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCC--CceEEEcCCCccHHHHHHHHHHhhcccccccccccccCCCceEEEEeCC
Confidence 3345567799999988 6666543 45789999999999999887532 25778888864
No 139
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=38.58 E-value=28 Score=30.58 Aligned_cols=40 Identities=18% Similarity=0.320 Sum_probs=31.6
Q ss_pred CeEEEEeCCCCH-HHHHHHhhcCCcccEEeecCcccccCCCCc
Q 024420 57 KMSITASNDLNE-ETLDALNKQGHEVDAFGIGTYLVTCYAQAA 98 (268)
Q Consensus 57 ~vkIi~S~~Lde-~~I~~l~~~g~~id~fGVGT~Lvt~~~~p~ 98 (268)
++.|++.||++. +.+.++.+.| .|+..||+.++.....|.
T Consensus 156 ~~Pvi~~GGI~~~~~v~~~l~~G--adgV~vgS~l~~~~e~~~ 196 (236)
T cd04730 156 DIPVIAAGGIADGRGIAAALALG--ADGVQMGTRFLATEESGA 196 (236)
T ss_pred CCCEEEECCCCCHHHHHHHHHcC--CcEEEEchhhhcCcccCC
Confidence 458999999987 8888887765 788999999988665543
No 140
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Probab=38.13 E-value=43 Score=27.97 Aligned_cols=38 Identities=21% Similarity=0.143 Sum_probs=28.4
Q ss_pred CCCeEEEEeCCCCHH-------------H---HHHHhhcCCcccEEeecCcccc
Q 024420 55 FEKMSITASNDLNEE-------------T---LDALNKQGHEVDAFGIGTYLVT 92 (268)
Q Consensus 55 ~~~vkIi~S~~Lde~-------------~---I~~l~~~g~~id~fGVGT~Lvt 92 (268)
-.++-|++|||.+.. . ++++.+.|..+.+.|+|+...+
T Consensus 103 ~~~~iiliTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~igig~~~~~ 156 (174)
T cd01454 103 KRKILLVISDGEPNDLDYYEGNVFATEDALRAVIEARKLGIEVFGITIDRDATT 156 (174)
T ss_pred cCcEEEEEeCCCcCcccccCcchhHHHHHHHHHHHHHhCCcEEEEEEecCcccc
Confidence 456789999998742 1 4556677888889999998754
No 141
>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=37.23 E-value=1.1e+02 Score=25.51 Aligned_cols=36 Identities=6% Similarity=0.117 Sum_probs=24.2
Q ss_pred CCCeEEEEeCCCCHHH-------HHHHhhcCCcccEEeecCcc
Q 024420 55 FEKMSITASNDLNEET-------LDALNKQGHEVDAFGIGTYL 90 (268)
Q Consensus 55 ~~~vkIi~S~~Lde~~-------I~~l~~~g~~id~fGVGT~L 90 (268)
...+-|+.|||.+... ++++.+.+..+-+||||+..
T Consensus 107 ~~~~iillTDG~~~~~~~~~~~~~~~~~~~~~~i~~igiG~~~ 149 (176)
T cd01464 107 WRPWVFLLTDGEPTDDLTAAIERIKEARDSKGRIVACAVGPKA 149 (176)
T ss_pred cCcEEEEEcCCCCCchHHHHHHHHHhhcccCCcEEEEEecccc
Confidence 4457899999987432 22222345789999999853
No 142
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=37.19 E-value=36 Score=31.37 Aligned_cols=33 Identities=15% Similarity=0.258 Sum_probs=28.4
Q ss_pred eEEEEeCCCC-HHHHHHHhhcCCcccEEeecCcccc
Q 024420 58 MSITASNDLN-EETLDALNKQGHEVDAFGIGTYLVT 92 (268)
Q Consensus 58 vkIi~S~~Ld-e~~I~~l~~~g~~id~fGVGT~Lvt 92 (268)
..|++.+|++ .+.+..+.+.|+ |++-|||.++.
T Consensus 199 ~pi~vgfGI~~~e~~~~~~~~GA--DgvVvGSaiv~ 232 (256)
T TIGR00262 199 KPVLVGFGISKPEQVKQAIDAGA--DGVIVGSAIVK 232 (256)
T ss_pred CCEEEeCCCCCHHHHHHHHHcCC--CEEEECHHHHH
Confidence 3699999997 999999988774 78889999976
No 143
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=37.10 E-value=1.4e+02 Score=27.31 Aligned_cols=40 Identities=25% Similarity=0.125 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHH
Q 024420 5 VPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFR 44 (268)
Q Consensus 5 v~nai~Va~~L~~~G~~l~GVRlDSGDl~~ls~~~R~~ld 44 (268)
+..|+.++++|-+.|.+..=|=+-|-+..+..+.+++.+-
T Consensus 24 ~e~a~~~a~Ali~gGi~~IEITl~sp~a~e~I~~l~~~~p 63 (211)
T COG0800 24 VEEALPLAKALIEGGIPAIEITLRTPAALEAIRALAKEFP 63 (211)
T ss_pred HHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhCc
Confidence 4678888999989999888888899886666555555543
No 144
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=36.96 E-value=62 Score=28.37 Aligned_cols=37 Identities=14% Similarity=0.205 Sum_probs=26.8
Q ss_pred CCCCCeEEEEeCC------CCH-HHHHHHhhcCCcccEEeecCc
Q 024420 53 PDFEKMSITASND------LNE-ETLDALNKQGHEVDAFGIGTY 89 (268)
Q Consensus 53 ~G~~~vkIi~S~~------Lde-~~I~~l~~~g~~id~fGVGT~ 89 (268)
++.+++-|+.++| -|. ...++|.++|..+-+.|||+.
T Consensus 129 ~~v~kvvIllTDg~~~~~~~~~~~~a~~l~~~GI~i~tVGiG~~ 172 (193)
T cd01477 129 ENYKKVVIVFASDYNDEGSNDPRPIAARLKSTGIAIITVAFTQD 172 (193)
T ss_pred CCCCeEEEEEecCccCCCCCCHHHHHHHHHHCCCEEEEEEeCCC
Confidence 4567888888864 233 335567788999999999985
No 145
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=36.44 E-value=1e+02 Score=28.89 Aligned_cols=51 Identities=16% Similarity=0.137 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCC
Q 024420 6 PNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN 67 (268)
Q Consensus 6 ~nai~Va~~L~~~G~~l~GVRlDSGDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Ld 67 (268)
.||--+|+.|.+.|+++.=++.=--|+..+...+|..+.. .+ -||.||||-
T Consensus 21 tNa~~la~~L~~~G~~v~~~~~VgD~~~~I~~~l~~a~~r----------~D-~vI~tGGLG 71 (255)
T COG1058 21 TNAAFLADELTELGVDLARITTVGDNPDRIVEALREASER----------AD-VVITTGGLG 71 (255)
T ss_pred chHHHHHHHHHhcCceEEEEEecCCCHHHHHHHHHHHHhC----------CC-EEEECCCcC
Confidence 3888899999999999877776556788888777777765 34 678888873
No 146
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=36.44 E-value=1e+02 Score=27.58 Aligned_cols=34 Identities=29% Similarity=0.417 Sum_probs=27.6
Q ss_pred CeEEEEeCCC-CHHHHHHHhhcCCcccEEeecCcccc
Q 024420 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVT 92 (268)
Q Consensus 57 ~vkIi~S~~L-de~~I~~l~~~g~~id~fGVGT~Lvt 92 (268)
++.+++|||+ +.+.|.++...|. ++.=||+.|-.
T Consensus 191 ~~~viasGGv~~~~Dl~~l~~~G~--~gvivg~al~~ 225 (229)
T PF00977_consen 191 NIPVIASGGVRSLEDLRELKKAGI--DGVIVGSALHE 225 (229)
T ss_dssp SSEEEEESS--SHHHHHHHHHTTE--CEEEESHHHHT
T ss_pred CCCEEEecCCCCHHHHHHHHHCCC--cEEEEehHhhC
Confidence 4599999999 8899999998774 78888888744
No 147
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=35.99 E-value=2e+02 Score=27.04 Aligned_cols=63 Identities=19% Similarity=0.260 Sum_probs=40.8
Q ss_pred HHHHHHhhcCCCccEEeeCCCChHHHHH--------HHHHHHHHHhHhhCCCCCCCeEE--EEeCCCCHHHHHHHhh
Q 024420 10 AVALALNDLGYKAVGIRLDSGDLAYLSC--------EARKFFRTIEKEFGVPDFEKMSI--TASNDLNEETLDALNK 76 (268)
Q Consensus 10 ~Va~~L~~~G~~l~GVRlDSGDl~~ls~--------~~R~~ld~~~~~l~~~G~~~vkI--i~S~~Lde~~I~~l~~ 76 (268)
+.+++|.+.|.....|-+||.|...+.+ ++.+-++.+. ..|+..++| ++..+.|.+.|.++.+
T Consensus 105 ~~~~~L~~aGl~~v~ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~----~~Gi~~v~in~v~~~g~N~~ei~~~~~ 177 (329)
T PRK13361 105 RFAAELADAGLKRLNISLDTLRPELFAALTRNGRLERVIAGIDAAK----AAGFERIKLNAVILRGQNDDEVLDLVE 177 (329)
T ss_pred HHHHHHHHcCCCeEEEEeccCCHHHhhhhcCCCCHHHHHHHHHHHH----HcCCCceEEEEEEECCCCHHHHHHHHH
Confidence 4677888899888899999998754321 2333333321 126655554 4566788888888774
No 148
>PRK03670 competence damage-inducible protein A; Provisional
Probab=35.94 E-value=1e+02 Score=28.58 Aligned_cols=50 Identities=18% Similarity=0.194 Sum_probs=35.0
Q ss_pred HHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCC
Q 024420 7 NFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDL 66 (268)
Q Consensus 7 nai~Va~~L~~~G~~l~GVRlDSGDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~L 66 (268)
|+-.++..|.+.|+++..+++=.-|...+...+++.+.+. .+ -||.|||+
T Consensus 21 N~~~la~~L~~~G~~v~~~~iV~Dd~~~I~~~l~~a~~~~---------~D-lVIttGGl 70 (252)
T PRK03670 21 NSAFIAQKLTEKGYWVRRITTVGDDVEEIKSVVLEILSRK---------PE-VLVISGGL 70 (252)
T ss_pred hHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhhCC---------CC-EEEECCCc
Confidence 6667888899999988777777667666666666655431 24 56777774
No 149
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=34.62 E-value=2.5e+02 Score=25.23 Aligned_cols=26 Identities=19% Similarity=0.189 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhhcCCCccEEeeCCCC
Q 024420 6 PNFCAVALALNDLGYKAVGIRLDSGD 31 (268)
Q Consensus 6 ~nai~Va~~L~~~G~~l~GVRlDSGD 31 (268)
..|++++++|.+.|.+..=|-+.|-+
T Consensus 27 ~~a~~i~~al~~~Gi~~iEitl~~~~ 52 (212)
T PRK05718 27 EDAVPLAKALVAGGLPVLEVTLRTPA 52 (212)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCcc
Confidence 45566666666666665555555555
No 150
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=34.58 E-value=2.6e+02 Score=23.87 Aligned_cols=63 Identities=17% Similarity=0.208 Sum_probs=37.5
Q ss_pred HHHhhcCCCccEEeeCCC-ChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcCCcccEEee
Q 024420 13 LALNDLGYKAVGIRLDSG-DLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGI 86 (268)
Q Consensus 13 ~~L~~~G~~l~GVRlDSG-Dl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g~~id~fGV 86 (268)
.++.+.|+++ +..++. |.......+++++.. + -+.-|+.+...+...+..+.+.|.|+..+|.
T Consensus 23 ~~~~~~g~~~--~~~~~~~~~~~~~~~i~~l~~~--------~-~dgii~~~~~~~~~~~~~~~~~~ipvv~~~~ 86 (259)
T cd01542 23 AALYENGYQM--LLMNTNFSIEKEIEALELLARQ--------K-VDGIILLATTITDEHREAIKKLNVPVVVVGQ 86 (259)
T ss_pred HHHHHCCCEE--EEEeCCCCHHHHHHHHHHHHhc--------C-CCEEEEeCCCCCHHHHHHHhcCCCCEEEEec
Confidence 4456678876 445554 555444445544432 2 3435555666666677777777878877764
No 151
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=34.46 E-value=2.5e+02 Score=25.27 Aligned_cols=63 Identities=22% Similarity=0.178 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcCC
Q 024420 5 VPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGH 79 (268)
Q Consensus 5 v~nai~Va~~L~~~G~~l~GVRlDSGDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g~ 79 (268)
...+..++++|.+.|.+..=|-++|.+-....+++++. ++++.|=+.-=+|.+..+...+.|+
T Consensus 15 ~~~a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~------------~~~~~vGAGTVl~~e~a~~ai~aGA 77 (201)
T PRK06015 15 VEHAVPLARALAAGGLPAIEITLRTPAALDAIRAVAAE------------VEEAIVGAGTILNAKQFEDAAKAGS 77 (201)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHH------------CCCCEEeeEeCcCHHHHHHHHHcCC
Confidence 45677888888888888778888877733333332222 2344555555566666666666554
No 152
>PRK14567 triosephosphate isomerase; Provisional
Probab=34.44 E-value=1.4e+02 Score=27.93 Aligned_cols=36 Identities=19% Similarity=0.197 Sum_probs=31.1
Q ss_pred CCeEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccc
Q 024420 56 EKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (268)
Q Consensus 56 ~~vkIi~S~~Lde~~I~~l~~~g~~id~fGVGT~Lvt 92 (268)
++++|+..|+.+++-+.+|.+++ .+|++-||+.-..
T Consensus 201 ~~v~IlYGGSV~~~N~~~l~~~~-diDG~LVGgasL~ 236 (253)
T PRK14567 201 KNIKIVYGGSLKAENAKDILSLP-DVDGGLIGGASLK 236 (253)
T ss_pred ccceEEEcCcCCHHHHHHHHcCC-CCCEEEeehhhhc
Confidence 56999999999999999998763 4999999987653
No 153
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=34.33 E-value=1.6e+02 Score=26.26 Aligned_cols=72 Identities=19% Similarity=0.237 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHhhcCCCccEEeeCCC----ChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHH-------H
Q 024420 5 VPNFCAVALALNDLGYKAVGIRLDSG----DLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLD-------A 73 (268)
Q Consensus 5 v~nai~Va~~L~~~G~~l~GVRlDSG----Dl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~-------~ 73 (268)
|.+|+++|.+ .|..+ |...+| .-..-...+++..... ..| .+++|.+|||.+...+. +
T Consensus 148 I~~a~ria~e---~GaD~--vKt~tg~~~~~t~~~~~~~~~~~~~~----~~p--~~~~Vk~sGGi~~~~~~~~l~~a~~ 216 (236)
T PF01791_consen 148 IARAARIAAE---LGADF--VKTSTGKPVGATPEDVELMRKAVEAA----PVP--GKVGVKASGGIDAEDFLRTLEDALE 216 (236)
T ss_dssp HHHHHHHHHH---TT-SE--EEEE-SSSSCSHHHHHHHHHHHHHTH----SST--TTSEEEEESSSSHHHHHHSHHHHHH
T ss_pred HHHHHHHHHH---hCCCE--EEecCCccccccHHHHHHHHHHHHhc----CCC--cceEEEEeCCCChHHHHHHHHHHHH
Confidence 4566666654 46554 777777 1111123344444443 222 36889999999665444 3
Q ss_pred HhhcCCcccEEeec
Q 024420 74 LNKQGHEVDAFGIG 87 (268)
Q Consensus 74 l~~~g~~id~fGVG 87 (268)
+.+.|+.+.++=.|
T Consensus 217 ~i~aGa~~~G~~~G 230 (236)
T PF01791_consen 217 FIEAGADRIGTSSG 230 (236)
T ss_dssp HHHTTHSEEEEEEH
T ss_pred HHHcCChhHHHHHH
Confidence 33567655444334
No 154
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=33.95 E-value=2.8e+02 Score=26.35 Aligned_cols=39 Identities=15% Similarity=0.212 Sum_probs=31.5
Q ss_pred CeEEEEeCCCC-HHHHHHHhhcCCcccEEeecCcccccCCCC
Q 024420 57 KMSITASNDLN-EETLDALNKQGHEVDAFGIGTYLVTCYAQA 97 (268)
Q Consensus 57 ~vkIi~S~~Ld-e~~I~~l~~~g~~id~fGVGT~Lvt~~~~p 97 (268)
++.|+++||+. ...|...+..|+ ++-.|||.|..+...|
T Consensus 197 ~vpVIA~GGI~~~~di~kAla~GA--~~VmiGt~fa~t~Es~ 236 (325)
T cd00381 197 GVPVIADGGIRTSGDIVKALAAGA--DAVMLGSLLAGTDESP 236 (325)
T ss_pred CCcEEecCCCCCHHHHHHHHHcCC--CEEEecchhcccccCC
Confidence 46799999996 688888888875 5778999999876665
No 155
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=33.89 E-value=1.3e+02 Score=25.87 Aligned_cols=36 Identities=14% Similarity=0.177 Sum_probs=25.6
Q ss_pred CCCCeEEEEeCCCCH------HHHHHHhhc-----CCcccEEeecCc
Q 024420 54 DFEKMSITASNDLNE------ETLDALNKQ-----GHEVDAFGIGTY 89 (268)
Q Consensus 54 G~~~vkIi~S~~Lde------~~I~~l~~~-----g~~id~fGVGT~ 89 (268)
+-...-|++|||.+. ..+.++.+. +..+..+|+|+.
T Consensus 133 ~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~~~~~i~i~~igiG~~ 179 (206)
T cd01456 133 GRVNVVVLITDGEDTCGPDPCEVARELAKRRTPAPPIKVNVIDFGGD 179 (206)
T ss_pred CCcceEEEEcCCCccCCCCHHHHHHHHHHhcCCCCCceEEEEEecCc
Confidence 444678999999864 344455443 678999999986
No 156
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=33.88 E-value=73 Score=32.43 Aligned_cols=131 Identities=18% Similarity=0.207 Sum_probs=78.0
Q ss_pred HHHHHHHHHHhhcCCCccEEeeCCCCh-HHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcCCcccEE
Q 024420 6 PNFCAVALALNDLGYKAVGIRLDSGDL-AYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAF 84 (268)
Q Consensus 6 ~nai~Va~~L~~~G~~l~GVRlDSGDl-~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g~~id~f 84 (268)
+.+.+-+.+|.+.|..+ |=+|+.+= ........+.+.+ -++++.|++.|=.+.+....+.+.|+....-
T Consensus 247 ~~~~~r~~~l~~ag~d~--i~iD~~~g~~~~~~~~i~~ik~--------~~p~~~vi~g~v~t~e~a~~a~~aGaD~i~v 316 (505)
T PLN02274 247 ESDKERLEHLVKAGVDV--VVLDSSQGDSIYQLEMIKYIKK--------TYPELDVIGGNVVTMYQAQNLIQAGVDGLRV 316 (505)
T ss_pred ccHHHHHHHHHHcCCCE--EEEeCCCCCcHHHHHHHHHHHH--------hCCCCcEEEecCCCHHHHHHHHHcCcCEEEE
Confidence 45677788888888665 55688541 1111223333333 2467899999999999999999999876655
Q ss_pred eec------CcccccCCCCccceEEEEeEE---CCccccccCCCCCCCCCCc--cceeeeeccCCCCeeeeEEecCCCC
Q 024420 85 GIG------TYLVTCYAQAALGCVFKLVEI---NKQPRIKLSEDVSKVSIPC--KKRSYRLYGKEGYPLVDIMTGENEP 152 (268)
Q Consensus 85 GVG------T~Lvt~~~~p~l~~vyKLve~---~g~P~~K~S~~~~K~t~PG--~K~vyR~~~~~g~~~~D~i~l~~e~ 152 (268)
|+| |+.++....|.+.-++.+.++ -+.|++=- |....|+ .|.+ - .++++-+++-+++..+|.
T Consensus 317 g~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~~vpVIad----GGI~~~~di~kAl-a-~GA~~V~vGs~~~~t~Es 389 (505)
T PLN02274 317 GMGSGSICTTQEVCAVGRGQATAVYKVASIAAQHGVPVIAD----GGISNSGHIVKAL-T-LGASTVMMGSFLAGTTEA 389 (505)
T ss_pred CCCCCccccCccccccCCCcccHHHHHHHHHHhcCCeEEEe----CCCCCHHHHHHHH-H-cCCCEEEEchhhcccccC
Confidence 654 444444445555554444433 23465533 4455555 2222 2 245556666667776664
No 157
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=33.84 E-value=69 Score=31.14 Aligned_cols=22 Identities=18% Similarity=0.205 Sum_probs=13.6
Q ss_pred HHHHHHHHHhhc-CCC-ccEEeeC
Q 024420 7 NFCAVALALNDL-GYK-AVGIRLD 28 (268)
Q Consensus 7 nai~Va~~L~~~-G~~-l~GVRlD 28 (268)
-+++|..++++. |.+ ..|||+.
T Consensus 196 f~~eii~air~~vG~d~~v~vRis 219 (361)
T cd04747 196 FAAEVVKAIRAAVGPDFPIILRFS 219 (361)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEEC
Confidence 456667777664 544 4577775
No 158
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=33.77 E-value=2.8e+02 Score=23.35 Aligned_cols=50 Identities=14% Similarity=0.122 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCC--CHHH----HHHHhhcCCcccEEeecCccc
Q 024420 34 YLSCEARKFFRTIEKEFGVPDFEKMSITASNDL--NEET----LDALNKQGHEVDAFGIGTYLV 91 (268)
Q Consensus 34 ~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~L--de~~----I~~l~~~g~~id~fGVGT~Lv 91 (268)
.+.+++.+.|++. |+.+++|++.|.+ -+.. ..+|.+.|. --.||=||.+-
T Consensus 67 ~~~~~~~~~l~~~-------gl~~~~vivGG~~vi~~~d~~~~~~~l~~~Gv-~~vF~pgt~~~ 122 (134)
T TIGR01501 67 IDCKGLRQKCDEA-------GLEGILLYVGGNLVVGKQDFPDVEKRFKEMGF-DRVFAPGTPPE 122 (134)
T ss_pred HHHHHHHHHHHHC-------CCCCCEEEecCCcCcChhhhHHHHHHHHHcCC-CEEECcCCCHH
Confidence 4456677777776 8888788888864 2333 446778884 44899998764
No 159
>smart00878 Biotin_carb_C Biotin carboxylase C-terminal domain. Biotin carboxylase is a component of the acetyl-CoA carboxylase multi-component enzyme which catalyses the first committed step in fatty acid synthesis in animals, plants and bacteria. Most of the active site residues reported in reference are in this C-terminal domain.
Probab=33.32 E-value=14 Score=29.91 Aligned_cols=33 Identities=18% Similarity=0.277 Sum_probs=25.8
Q ss_pred eEEEEeCCCCHHHHHHHhhcCCcccEEeecCcc
Q 024420 58 MSITASNDLNEETLDALNKQGHEVDAFGIGTYL 90 (268)
Q Consensus 58 vkIi~S~~Lde~~I~~l~~~g~~id~fGVGT~L 90 (268)
+|||+.|.=-+..|+++.+.=.+...-||-|++
T Consensus 52 AKliv~g~~R~~A~~rl~~aL~e~~i~Gv~TN~ 84 (107)
T smart00878 52 AKLIVHGETREEAIARLRRALDEFRIEGVKTNI 84 (107)
T ss_pred eEEEEEcCCHHHHHHHHHHHHHhCEEECccCCH
Confidence 589999888888999888654556667888876
No 160
>PF06135 DUF965: Bacterial protein of unknown function (DUF965); InterPro: IPR009309 This family consists of several hypothetical bacterial proteins. The function of the family is unknown.
Probab=32.97 E-value=38 Score=26.48 Aligned_cols=36 Identities=47% Similarity=0.726 Sum_probs=27.2
Q ss_pred HHHHHHhhcCCCc----cEEeeCCCChHHHHHH--HHHHHHHH
Q 024420 10 AVALALNDLGYKA----VGIRLDSGDLAYLSCE--ARKFFRTI 46 (268)
Q Consensus 10 ~Va~~L~~~G~~l----~GVRlDSGDl~~ls~~--~R~~ld~~ 46 (268)
.|..+|++.||.+ .|- +=||||+|.... +|.+....
T Consensus 23 ~Vy~AL~EKGYnPinQivGY-llSGDPaYItsh~nAR~lIr~~ 64 (79)
T PF06135_consen 23 QVYAALEEKGYNPINQIVGY-LLSGDPAYITSHNNARNLIRKI 64 (79)
T ss_pred HHHHHHHHcCCChHHHHHhh-eecCCCccccCcccHHHHHHHH
Confidence 6888999999875 343 459999998765 77777664
No 161
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=32.63 E-value=2.4e+02 Score=24.58 Aligned_cols=65 Identities=20% Similarity=0.039 Sum_probs=39.6
Q ss_pred HHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcCCcccEEe
Q 024420 11 VALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFG 85 (268)
Q Consensus 11 Va~~L~~~G~~l~GVRlDSGDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g~~id~fG 85 (268)
+..++.+.|+.+.-...| +.......++..+.. +.-+.-|+.+...|...+..+.+.|.|+..++
T Consensus 21 i~~~~~~~gy~~~~~~~~--~~~~~~~~~~~~l~~--------~~vdgvi~~~~~~~~~~~~~l~~~~iPvv~~~ 85 (269)
T cd06297 21 IEGALLEQRYDLALFPLL--SLARLKRYLESTTLA--------YLTDGLLLASYDLTERLAERRLPTERPVVLVD 85 (269)
T ss_pred HHHHHHHCCCEEEEEeCC--CcHHHHHHHHHHHHh--------cCCCEEEEecCccChHHHHHHhhcCCCEEEEc
Confidence 344456779887655444 322222333333443 33454677777788887888888888887775
No 162
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=32.62 E-value=1.3e+02 Score=26.51 Aligned_cols=35 Identities=23% Similarity=0.371 Sum_probs=28.1
Q ss_pred CeEEEEeCCCC-HHHHHHHhhcCCcccEEeecCccccc
Q 024420 57 KMSITASNDLN-EETLDALNKQGHEVDAFGIGTYLVTC 93 (268)
Q Consensus 57 ~vkIi~S~~Ld-e~~I~~l~~~g~~id~fGVGT~Lvt~ 93 (268)
++.|+++||+. .+.+.++.+.| ++++-|||.+...
T Consensus 193 ~iPvia~GGI~~~~di~~~~~~G--a~gv~vgsa~~~~ 228 (241)
T PRK13585 193 DIPVIASGGVTTLDDLRALKEAG--AAGVVVGSALYKG 228 (241)
T ss_pred CCCEEEeCCCCCHHHHHHHHHcC--CCEEEEEHHHhcC
Confidence 46799999999 88888887765 5678889988764
No 163
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=32.60 E-value=1.3e+02 Score=28.96 Aligned_cols=72 Identities=19% Similarity=0.250 Sum_probs=47.5
Q ss_pred HHHHHHHHHhhcCCCccEEeeCC--CChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcCCcccEE
Q 024420 7 NFCAVALALNDLGYKAVGIRLDS--GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAF 84 (268)
Q Consensus 7 nai~Va~~L~~~G~~l~GVRlDS--GDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g~~id~f 84 (268)
+..+...+|-+.|....-|=+|| |. |..+.+.+.+...+ ++...|++.|=.+.+....|.+.|+....-
T Consensus 94 e~~~r~~~lv~a~~~~d~i~~D~ahg~----s~~~~~~i~~i~~~-----~p~~~vi~GnV~t~e~a~~l~~aGad~I~V 164 (321)
T TIGR01306 94 CEYEFVTQLAEEALTPEYITIDIAHGH----SNSVINMIKHIKTH-----LPDSFVIAGNVGTPEAVRELENAGADATKV 164 (321)
T ss_pred HHHHHHHHHHhcCCCCCEEEEeCccCc----hHHHHHHHHHHHHh-----CCCCEEEEecCCCHHHHHHHHHcCcCEEEE
Confidence 34566667777775556788898 77 44444444444222 345568888788999999999999865444
Q ss_pred eec
Q 024420 85 GIG 87 (268)
Q Consensus 85 GVG 87 (268)
|+|
T Consensus 165 ~~G 167 (321)
T TIGR01306 165 GIG 167 (321)
T ss_pred CCC
Confidence 543
No 164
>PTZ00077 asparagine synthetase-like protein; Provisional
Probab=32.25 E-value=1.2e+02 Score=31.38 Aligned_cols=56 Identities=16% Similarity=0.102 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHHHHH-hHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcC-------------CcccEEeecCc
Q 024420 32 LAYLSCEARKFFRTI-EKEFGVPDFEKMSITASNDLNEETLDALNKQG-------------HEVDAFGIGTY 89 (268)
Q Consensus 32 l~~ls~~~R~~ld~~-~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g-------------~~id~fGVGT~ 89 (268)
......++|+.|.++ ..++..+ ..+-++.|||||=..|..+..+- .++.+|-||..
T Consensus 215 ~~~~~~~lr~~L~~AV~~rl~sd--vpvGv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~~~l~tfsig~~ 284 (586)
T PTZ00077 215 GEIDLEEIREALEAAVRKRLMGD--VPFGLFLSGGLDSSIVAAIVAKLIKNGEIDLSKRGMPKLHSFCIGLE 284 (586)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC--CceEEEecCCchHHHHHHHHHHhhcccccccccccCCCceEEEcCCC
Confidence 345566789999888 6666532 45789999999999999887532 35778888864
No 165
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=32.03 E-value=56 Score=31.94 Aligned_cols=24 Identities=21% Similarity=0.444 Sum_probs=21.0
Q ss_pred HHHHHhhcCCcccEEeecCccccc
Q 024420 70 TLDALNKQGHEVDAFGIGTYLVTC 93 (268)
Q Consensus 70 ~I~~l~~~g~~id~fGVGT~Lvt~ 93 (268)
.|++|+++|+|||+.|+=+++...
T Consensus 209 lI~~LkekG~pIDgiG~QsH~~~~ 232 (345)
T COG3693 209 LIEELKEKGAPIDGIGIQSHFSGD 232 (345)
T ss_pred HHHHHHHCCCCccceeeeeeecCC
Confidence 688899999999999999997653
No 166
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
Probab=32.01 E-value=1.3e+02 Score=29.62 Aligned_cols=56 Identities=18% Similarity=0.220 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHHH-hHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcC---CcccEEeecCc
Q 024420 32 LAYLSCEARKFFRTI-EKEFGVPDFEKMSITASNDLNEETLDALNKQG---HEVDAFGIGTY 89 (268)
Q Consensus 32 l~~ls~~~R~~ld~~-~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g---~~id~fGVGT~ 89 (268)
....+.++++.|.++ ..++. .-..+-++.|||+|=..|..+..+. .++..|.+|..
T Consensus 231 ~~~~~e~l~~~l~~aV~~r~~--~~~~vg~~LSGGlDSs~iaa~a~~~~~~~~~~~~t~~~~ 290 (467)
T TIGR01536 231 EEDLVDELRSLLEDAVKRRLV--ADVPVGVLLSGGLDSSLVAAIARREAPRGPVHTFSIGFE 290 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHhc--cCCceEEEecCChhHHHHHHHHHHhcCCCCceEEEEecC
Confidence 345667788888887 55443 2245789999999999999887542 25778877754
No 167
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=31.83 E-value=3.2e+02 Score=27.40 Aligned_cols=73 Identities=15% Similarity=0.207 Sum_probs=48.3
Q ss_pred CCccEEeeCCC------ChHHHHHHHHHHHHHHhHhhCCCCCC-CeEEEEeCCC-CHHHHHHHhhcCCcccEEeecCccc
Q 024420 20 YKAVGIRLDSG------DLAYLSCEARKFFRTIEKEFGVPDFE-KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLV 91 (268)
Q Consensus 20 ~~l~GVRlDSG------Dl~~ls~~~R~~ld~~~~~l~~~G~~-~vkIi~S~~L-de~~I~~l~~~g~~id~fGVGT~Lv 91 (268)
....-+--||| .+..|.-.++++.|+...++ |+. ++.|++.||| |...+......|+ ++-=+||.+.
T Consensus 178 aD~Ivvq~EAGGH~g~~~~~~Llp~v~~l~d~v~~~~---~~~~~ipViAAGGI~tg~~vaAA~alGA--d~V~~GT~fl 252 (418)
T cd04742 178 ADDITVEADSGGHTDNRPLSVLLPTIIRLRDELAARY---GYRRPIRVGAAGGIGTPEAAAAAFALGA--DFIVTGSINQ 252 (418)
T ss_pred CCEEEEcccCCCCCCCccHHhHHHHHHHHHHHHhhcc---ccCCCceEEEECCCCCHHHHHHHHHcCC--cEEeeccHHH
Confidence 35555557775 23444444555555542222 333 5899999999 9999999999986 3556899998
Q ss_pred ccCCCC
Q 024420 92 TCYAQA 97 (268)
Q Consensus 92 t~~~~p 97 (268)
.|...+
T Consensus 253 at~Ea~ 258 (418)
T cd04742 253 CTVEAG 258 (418)
T ss_pred hCcccc
Confidence 766543
No 168
>PLN02561 triosephosphate isomerase
Probab=31.28 E-value=1.3e+02 Score=28.05 Aligned_cols=53 Identities=19% Similarity=0.181 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcCCcccEEeecCcc
Q 024420 34 YLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYL 90 (268)
Q Consensus 34 ~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g~~id~fGVGT~L 90 (268)
+....+|+.|.+. ++-.--++++|+..|++++.-+.++..+ ..+|++.||+.=
T Consensus 184 ~v~~~Ir~~l~~~---~~~~~a~~i~ILYGGSV~~~N~~~l~~~-~~iDG~LVG~AS 236 (253)
T PLN02561 184 EVHDELRKWLHKN---VSPEVAATTRIIYGGSVTGANCKELAAQ-PDVDGFLVGGAS 236 (253)
T ss_pred HHHHHHHHHHHHh---hcccccccceEEEeCCcCHHHHHHHhcC-CCCCeEEEehHh
Confidence 3444466655442 2211135689999999999999999754 349999999764
No 169
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=31.24 E-value=2.3e+02 Score=24.07 Aligned_cols=65 Identities=22% Similarity=0.254 Sum_probs=37.7
Q ss_pred HHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcCCcccEEeec
Q 024420 12 ALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIG 87 (268)
Q Consensus 12 a~~L~~~G~~l~GVRlDSGDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g~~id~fGVG 87 (268)
..++++.|+.+.-+..|+.+ .....++.++.. + -+.-|+.+.+.+...+..+.+.|.|+..|+..
T Consensus 22 ~~~~~~~g~~~~~~~~~~~~--~~~~~i~~~~~~--------~-vdgiii~~~~~~~~~~~~~~~~~ipvV~~~~~ 86 (266)
T cd06278 22 SRALQARGYQPLLINTDDDE--DLDAALRQLLQY--------R-VDGVIVTSGTLSSELAEECRRNGIPVVLINRY 86 (266)
T ss_pred HHHHHHCCCeEEEEcCCCCH--HHHHHHHHHHHc--------C-CCEEEEecCCCCHHHHHHHhhcCCCEEEECCc
Confidence 44556779887655555433 222223333322 3 34355555556666677787888888887654
No 170
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=31.22 E-value=3e+02 Score=23.56 Aligned_cols=64 Identities=25% Similarity=0.238 Sum_probs=37.5
Q ss_pred HHHHHhhcCCCccEEeeCCC-ChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcCCcccEEe
Q 024420 11 VALALNDLGYKAVGIRLDSG-DLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFG 85 (268)
Q Consensus 11 Va~~L~~~G~~l~GVRlDSG-Dl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g~~id~fG 85 (268)
+.+++++.|+.+. + .|++ |.......++.+... + -+.-|+++...+...+..+.+.|.|+..++
T Consensus 21 i~~~~~~~g~~~~-~-~~~~~~~~~~~~~~~~l~~~--------~-vdgiii~~~~~~~~~~~~l~~~~iPvv~~~ 85 (268)
T cd06273 21 FQETLAAHGYTLL-V-ASSGYDLDREYAQARKLLER--------G-VDGLALIGLDHSPALLDLLARRGVPYVATW 85 (268)
T ss_pred HHHHHHHCCCEEE-E-ecCCCCHHHHHHHHHHHHhc--------C-CCEEEEeCCCCCHHHHHHHHhCCCCEEEEc
Confidence 4555667788763 3 4554 544444444444433 2 344566666667777888877777765554
No 171
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=30.82 E-value=2.5e+02 Score=26.08 Aligned_cols=34 Identities=12% Similarity=0.143 Sum_probs=22.7
Q ss_pred CeEEEEeCCCC-HHHHHHHhhcCCcccEEeecCcccc
Q 024420 57 KMSITASNDLN-EETLDALNKQGHEVDAFGIGTYLVT 92 (268)
Q Consensus 57 ~vkIi~S~~Ld-e~~I~~l~~~g~~id~fGVGT~Lvt 92 (268)
++.|+++||+. .+.+.++...|+ +...|||.+..
T Consensus 252 ~ipIig~GGI~~~~da~~~l~aGA--~~V~i~ta~~~ 286 (299)
T cd02940 252 GLPISGIGGIESWEDAAEFLLLGA--SVVQVCTAVMN 286 (299)
T ss_pred CCcEEEECCCCCHHHHHHHHHcCC--ChheEceeecc
Confidence 57899999874 555666666774 45556676654
No 172
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=30.81 E-value=1.9e+02 Score=25.60 Aligned_cols=75 Identities=16% Similarity=0.125 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhhcCCCccEEeeCCCCh---HHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCC-HHHHHHHhhcCCcc
Q 024420 6 PNFCAVALALNDLGYKAVGIRLDSGDL---AYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN-EETLDALNKQGHEV 81 (268)
Q Consensus 6 ~nai~Va~~L~~~G~~l~GVRlDSGDl---~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Ld-e~~I~~l~~~g~~i 81 (268)
.+.+++++.+.+.|.+..-+|-=++.. ......++++.++ ..+.+++.||++ .+.++.+.+.|+..
T Consensus 32 ~~~~e~a~~~~~~G~~~l~i~dl~~~~~~~~~~~~~i~~i~~~----------~~~~l~v~GGi~~~~~~~~~~~~Ga~~ 101 (241)
T PRK13585 32 GDPVEVAKRWVDAGAETLHLVDLDGAFEGERKNAEAIEKIIEA----------VGVPVQLGGGIRSAEDAASLLDLGVDR 101 (241)
T ss_pred CCHHHHHHHHHHcCCCEEEEEechhhhcCCcccHHHHHHHHHH----------cCCcEEEcCCcCCHHHHHHHHHcCCCE
Confidence 367888888888888777777444322 2334445555544 346888899988 56677777777643
Q ss_pred cEEeecCcccc
Q 024420 82 DAFGIGTYLVT 92 (268)
Q Consensus 82 d~fGVGT~Lvt 92 (268)
.=+||.+..
T Consensus 102 --v~iGs~~~~ 110 (241)
T PRK13585 102 --VILGTAAVE 110 (241)
T ss_pred --EEEChHHhh
Confidence 345776654
No 173
>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell. In association with invasion, T. gondii sequentially discharges three sets of secretory organelles beginning with the micronemes, which contain adhesive proteins involved in parasite attachment to a host cell. Deployed as protein complexes, several micronemal proteins possess vertebrate-derived adhesive sequences that function in binding receptors. The VWA domain likely mediates the protein-protein interactions of these with their interacting partners.
Probab=30.75 E-value=1.5e+02 Score=24.73 Aligned_cols=37 Identities=14% Similarity=0.370 Sum_probs=26.9
Q ss_pred CCCCeEEEEeCCCCH------HHHHHHhhcCCcccEEeecCcc
Q 024420 54 DFEKMSITASNDLNE------ETLDALNKQGHEVDAFGIGTYL 90 (268)
Q Consensus 54 G~~~vkIi~S~~Lde------~~I~~l~~~g~~id~fGVGT~L 90 (268)
+..++-|+++||.+. ..++++.+.|..+-.+|||+..
T Consensus 107 ~~~~~villTDG~~~~~~~~~~~a~~l~~~gv~v~~igiG~~~ 149 (186)
T cd01471 107 NAPQLVIIMTDGIPDSKFRTLKEARKLRERGVIIAVLGVGQGV 149 (186)
T ss_pred cCceEEEEEccCCCCCCcchhHHHHHHHHCCCEEEEEEeehhh
Confidence 445678899988752 3456677778888899999753
No 174
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=30.70 E-value=1.6e+02 Score=26.17 Aligned_cols=74 Identities=15% Similarity=0.136 Sum_probs=46.0
Q ss_pred HHHHHHHHHhhcCCC-ccEEeeCCC---ChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCC-HHHHHHHhhcCCcc
Q 024420 7 NFCAVALALNDLGYK-AVGIRLDSG---DLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN-EETLDALNKQGHEV 81 (268)
Q Consensus 7 nai~Va~~L~~~G~~-l~GVRlDSG---Dl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Ld-e~~I~~l~~~g~~i 81 (268)
+.+++|+.+.+.|.+ +.-+=+|.. .... -..++++-++ .++.|+++||+. .+.++.+...| .
T Consensus 28 d~~~~a~~~~~~G~~~i~i~d~~~~~~~~~~~-~~~i~~i~~~----------~~~pv~~~GGI~s~~d~~~~l~~G--~ 94 (243)
T cd04731 28 DPVELAKRYNEQGADELVFLDITASSEGRETM-LDVVERVAEE----------VFIPLTVGGGIRSLEDARRLLRAG--A 94 (243)
T ss_pred CHHHHHHHHHHCCCCEEEEEcCCcccccCccc-HHHHHHHHHh----------CCCCEEEeCCCCCHHHHHHHHHcC--C
Confidence 678999999888866 333444421 1111 1112222222 235799999997 57888888776 5
Q ss_pred cEEeecCccccc
Q 024420 82 DAFGIGTYLVTC 93 (268)
Q Consensus 82 d~fGVGT~Lvt~ 93 (268)
+..-+||.+..+
T Consensus 95 ~~v~ig~~~~~~ 106 (243)
T cd04731 95 DKVSINSAAVEN 106 (243)
T ss_pred ceEEECchhhhC
Confidence 566788888764
No 175
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=30.60 E-value=2.7e+02 Score=24.92 Aligned_cols=63 Identities=24% Similarity=0.216 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcCC
Q 024420 5 VPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGH 79 (268)
Q Consensus 5 v~nai~Va~~L~~~G~~l~GVRlDSGDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g~ 79 (268)
...+..++++|.+.|.+..=|-+.|.+-....+++++. ++++.|=+..=+|.+.++...+.|+
T Consensus 19 ~~~a~~~~~al~~gGi~~iEiT~~t~~a~~~I~~l~~~------------~p~~~vGAGTV~~~e~a~~a~~aGA 81 (196)
T PF01081_consen 19 PEDAVPIAEALIEGGIRAIEITLRTPNALEAIEALRKE------------FPDLLVGAGTVLTAEQAEAAIAAGA 81 (196)
T ss_dssp GGGHHHHHHHHHHTT--EEEEETTSTTHHHHHHHHHHH------------HTTSEEEEES--SHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHCCCCEEEEecCCccHHHHHHHHHHH------------CCCCeeEEEeccCHHHHHHHHHcCC
Confidence 45688899999999999889999988744333333332 2456666667777777777777665
No 176
>PRK14905 triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional
Probab=30.08 E-value=1.3e+02 Score=29.26 Aligned_cols=51 Identities=16% Similarity=0.202 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccc
Q 024420 37 CEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (268)
Q Consensus 37 ~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g~~id~fGVGT~Lvt 92 (268)
..+|+.|.+. ++-. -++++|+..|+.+..-+.++..+ ..+|++.||+.-..
T Consensus 197 ~~Ir~~l~~~---~~~~-~~~v~ILYGGSV~~~N~~~l~~~-~~iDG~LVG~asl~ 247 (355)
T PRK14905 197 AIIKQCLFEL---FAEE-SKKIPVLYGGSVNLENANELIMK-PHIDGLFIGRSAWD 247 (355)
T ss_pred HHHHHHHHHH---hccc-cCceeEEEeCcCCHHHHHHHhcC-CCCCEEEechhhcc
Confidence 3456555443 3322 35789999999999999999864 35999999998764
No 177
>PF15643 Tox-PL-2: Papain fold toxin 2
Probab=29.62 E-value=62 Score=26.37 Aligned_cols=26 Identities=31% Similarity=0.270 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHhhcCCCccEEeeCCC
Q 024420 5 VPNFCAVALALNDLGYKAVGIRLDSG 30 (268)
Q Consensus 5 v~nai~Va~~L~~~G~~l~GVRlDSG 30 (268)
++-|.++.+.|+++|++-.-||++||
T Consensus 22 ~~cA~Al~~~L~~~gI~Gk~i~l~T~ 47 (100)
T PF15643_consen 22 VECASALKQFLKQAGIPGKIIRLYTG 47 (100)
T ss_pred HHHHHHHHHHHHHCCCCceEEEEEec
Confidence 46788999999999999999999997
No 178
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=29.46 E-value=1.1e+02 Score=25.11 Aligned_cols=37 Identities=19% Similarity=0.294 Sum_probs=26.1
Q ss_pred CCCCCeEEEEeCCCCHHHH----HHHhhcCCcccEEeecCc
Q 024420 53 PDFEKMSITASNDLNEETL----DALNKQGHEVDAFGIGTY 89 (268)
Q Consensus 53 ~G~~~vkIi~S~~Lde~~I----~~l~~~g~~id~fGVGT~ 89 (268)
++..++-|++|||-+.... ..+.+.|..+.++|+|+.
T Consensus 101 ~~~~~~iiliTDG~~~~~~~~~~~~l~~~gv~i~~ig~g~~ 141 (164)
T cd01472 101 EGVPKVLVVITDGKSQDDVEEPAVELKQAGIEVFAVGVKNA 141 (164)
T ss_pred CCCCEEEEEEcCCCCCchHHHHHHHHHHCCCEEEEEECCcC
Confidence 3567788999999876443 345567777777888874
No 179
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=28.98 E-value=1.1e+02 Score=26.79 Aligned_cols=33 Identities=18% Similarity=0.328 Sum_probs=24.0
Q ss_pred CCeEEEEeCCCCHH----HHHHHhhcCCcccEEeecC
Q 024420 56 EKMSITASNDLNEE----TLDALNKQGHEVDAFGIGT 88 (268)
Q Consensus 56 ~~vkIi~S~~Lde~----~I~~l~~~g~~id~fGVGT 88 (268)
+++-|+++||-.-+ .+..+.+.|..+-+.|||.
T Consensus 109 ~kvvillTDG~s~~~~~~~a~~lk~~gv~i~~VgvG~ 145 (224)
T cd01475 109 PRVGIVVTDGRPQDDVSEVAAKARALGIEMFAVGVGR 145 (224)
T ss_pred CeEEEEEcCCCCcccHHHHHHHHHHCCcEEEEEeCCc
Confidence 67789999996633 3455556788888888885
No 180
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=28.82 E-value=2.1e+02 Score=25.88 Aligned_cols=77 Identities=16% Similarity=0.123 Sum_probs=47.5
Q ss_pred HHHHHHHHHhhcCCC-ccEEeeCCCC-hHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCC-HHHHHHHhhcCCcccE
Q 024420 7 NFCAVALALNDLGYK-AVGIRLDSGD-LAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN-EETLDALNKQGHEVDA 83 (268)
Q Consensus 7 nai~Va~~L~~~G~~-l~GVRlDSGD-l~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Ld-e~~I~~l~~~g~~id~ 83 (268)
+.+++|+.+.+.|.+ +.-+=+|... ....-.++.+.+.+. .++.|+++||+. .+.+.++...| .+.
T Consensus 31 dp~~~a~~~~~~G~~~l~v~Dl~~~~~~~~~n~~~i~~i~~~---------~~~pv~~~GGi~s~~d~~~~~~~G--a~~ 99 (254)
T TIGR00735 31 DPVELAQRYDEEGADELVFLDITASSEGRTTMIDVVERTAET---------VFIPLTVGGGIKSIEDVDKLLRAG--ADK 99 (254)
T ss_pred CHHHHHHHHHHcCCCEEEEEcCCcccccChhhHHHHHHHHHh---------cCCCEEEECCCCCHHHHHHHHHcC--CCE
Confidence 678888888887754 3333344321 111111122222221 346899999997 89999998877 566
Q ss_pred EeecCcccccC
Q 024420 84 FGIGTYLVTCY 94 (268)
Q Consensus 84 fGVGT~Lvt~~ 94 (268)
.-|||.+.+..
T Consensus 100 vivgt~~~~~p 110 (254)
T TIGR00735 100 VSINTAAVKNP 110 (254)
T ss_pred EEEChhHhhCh
Confidence 78899988743
No 181
>PRK12928 lipoyl synthase; Provisional
Probab=28.60 E-value=2.9e+02 Score=25.97 Aligned_cols=74 Identities=15% Similarity=0.071 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhhcCCC---ccEEee-CCCC--hHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCC--CHHHHHHHhhc
Q 024420 6 PNFCAVALALNDLGYK---AVGIRL-DSGD--LAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDL--NEETLDALNKQ 77 (268)
Q Consensus 6 ~nai~Va~~L~~~G~~---l~GVRl-DSGD--l~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~L--de~~I~~l~~~ 77 (268)
.-..++|+++.+.|.+ +.|+.. |-.| ..++..-++++-... +--.+.++..+-+ +.+.+..+.+.
T Consensus 90 eei~~~a~~~~~~G~keivitg~~~dDl~d~g~~~~~ell~~Ik~~~-------p~~~I~~ltp~~~~~~~e~L~~l~~A 162 (290)
T PRK12928 90 DEPERVAEAVAALGLRYVVLTSVARDDLPDGGAAHFVATIAAIRARN-------PGTGIEVLTPDFWGGQRERLATVLAA 162 (290)
T ss_pred HHHHHHHHHHHHCCCCEEEEEEEeCCcccccCHHHHHHHHHHHHhcC-------CCCEEEEeccccccCCHHHHHHHHHc
Confidence 4567888888888876 345544 3233 233333333332221 2224555544333 57789999888
Q ss_pred CCcccEEee
Q 024420 78 GHEVDAFGI 86 (268)
Q Consensus 78 g~~id~fGV 86 (268)
|..+-.+++
T Consensus 163 g~~i~~hnl 171 (290)
T PRK12928 163 KPDVFNHNL 171 (290)
T ss_pred CchhhcccC
Confidence 877666654
No 182
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=28.36 E-value=1.7e+02 Score=29.70 Aligned_cols=70 Identities=24% Similarity=0.399 Sum_probs=43.2
Q ss_pred CCCccEEeeCCCChHHHH-HHHHHHHHHHhHhh-CCCCCCCeEEEEe--CCCCHHHHHHHhhcCCcccEEeecC
Q 024420 19 GYKAVGIRLDSGDLAYLS-CEARKFFRTIEKEF-GVPDFEKMSITAS--NDLNEETLDALNKQGHEVDAFGIGT 88 (268)
Q Consensus 19 G~~l~GVRlDSGDl~~ls-~~~R~~ld~~~~~l-~~~G~~~vkIi~S--~~Lde~~I~~l~~~g~~id~fGVGT 88 (268)
|.++..|=+--|.|..++ .++.++++.....+ +..+...+.+-++ +.++++.++.|.+.|....++|+=|
T Consensus 216 ~~~v~tIyfGGGTPt~L~~~~L~~Ll~~i~~~f~~~~~~~EiTvE~grPd~it~e~L~~Lk~~Gv~RISIGvQS 289 (488)
T PRK08207 216 GLKITTIYFGGGTPTSLTAEELERLLEEIYENFPDVKNVKEFTVEAGRPDTITEEKLEVLKKYGVDRISINPQT 289 (488)
T ss_pred CCceeEEEEeCCCccCCCHHHHHHHHHHHHHhccccCCceEEEEEcCCCCCCCHHHHHHHHhcCCCeEEEcCCc
Confidence 445556666677776654 33666666654444 4444444344332 3799999999998886655666544
No 183
>PRK14565 triosephosphate isomerase; Provisional
Probab=27.89 E-value=1.5e+02 Score=27.40 Aligned_cols=36 Identities=17% Similarity=0.289 Sum_probs=30.9
Q ss_pred CCeEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccc
Q 024420 56 EKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (268)
Q Consensus 56 ~~vkIi~S~~Lde~~I~~l~~~g~~id~fGVGT~Lvt 92 (268)
++++|+..|++++.-+.++..+ ..+|++.||..-..
T Consensus 188 ~~~~IlYGGSV~~~N~~~l~~~-~~iDG~LvG~asl~ 223 (237)
T PRK14565 188 SKSHIIYGGSVNQENIRDLKSI-NQLSGVLVGSASLD 223 (237)
T ss_pred CCceEEEcCccCHhhHHHHhcC-CCCCEEEEechhhc
Confidence 5789999999999999999873 35999999987654
No 184
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=27.84 E-value=2.4e+02 Score=23.88 Aligned_cols=36 Identities=11% Similarity=0.260 Sum_probs=27.1
Q ss_pred CCCCCeEEEEeCCCC--------HHHHHHHhhcCCcccEEeecC
Q 024420 53 PDFEKMSITASNDLN--------EETLDALNKQGHEVDAFGIGT 88 (268)
Q Consensus 53 ~G~~~vkIi~S~~Ld--------e~~I~~l~~~g~~id~fGVGT 88 (268)
++..++-|++|||-+ +..+.++++.|..+-+.|||.
T Consensus 107 ~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~gi~i~~vgig~ 150 (186)
T cd01480 107 QKENKFLLVITDGHSDGSPDGGIEKAVNEADHLGIKIFFVAVGS 150 (186)
T ss_pred CCCceEEEEEeCCCcCCCcchhHHHHHHHHHHCCCEEEEEecCc
Confidence 456788999999964 233566777888888888887
No 185
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=27.77 E-value=1.7e+02 Score=28.69 Aligned_cols=43 Identities=16% Similarity=0.220 Sum_probs=34.0
Q ss_pred CCeEEEEeCCC-CHHHHHHHhhcCCcccEEeecCcccccCCCCccc
Q 024420 56 EKMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTCYAQAALG 100 (268)
Q Consensus 56 ~~vkIi~S~~L-de~~I~~l~~~g~~id~fGVGT~Lvt~~~~p~l~ 100 (268)
.++.||++||+ +...|...+..|+ |+-.+||.|..+...|.-.
T Consensus 255 ~~vpVIAdGGI~~~~diakAlalGA--d~Vm~Gs~fa~t~Espg~~ 298 (368)
T PRK08649 255 RYVHVIADGGIGTSGDIAKAIACGA--DAVMLGSPLARAAEAPGRG 298 (368)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCC--CeecccchhcccccCCCcc
Confidence 47899999999 6777888777774 6777999999877766544
No 186
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=27.73 E-value=2.9e+02 Score=27.04 Aligned_cols=78 Identities=12% Similarity=0.116 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhhcCCCc-cEEeeC----CCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcCCc
Q 024420 6 PNFCAVALALNDLGYKA-VGIRLD----SGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHE 80 (268)
Q Consensus 6 ~nai~Va~~L~~~G~~l-~GVRlD----SGDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g~~ 80 (268)
..++++|+.+++.|.++ .|-.-+ ..+..-+..+-.++|.++..++|++ ++|.=+|+..+..+.+.
T Consensus 115 eq~l~~A~~lk~~g~~~~r~g~~kpRtsp~sf~G~g~~gl~~L~~~~~e~Gl~-------~~tev~d~~~v~~~~~~--- 184 (352)
T PRK13396 115 EMIVETAKRVKAAGAKFLRGGAYKPRTSPYAFQGHGESALELLAAAREATGLG-------IITEVMDAADLEKIAEV--- 184 (352)
T ss_pred HHHHHHHHHHHHcCCCEEEeeeecCCCCCcccCCchHHHHHHHHHHHHHcCCc-------EEEeeCCHHHHHHHHhh---
Confidence 56899999999988765 121111 1333456677888999987777764 45667999999999875
Q ss_pred ccEEeecCccccc
Q 024420 81 VDAFGIGTYLVTC 93 (268)
Q Consensus 81 id~fGVGT~Lvt~ 93 (268)
.|.+=||+..++.
T Consensus 185 ~d~lqIga~~~~n 197 (352)
T PRK13396 185 ADVIQVGARNMQN 197 (352)
T ss_pred CCeEEECcccccC
Confidence 7999999999884
No 187
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=27.44 E-value=3e+02 Score=24.67 Aligned_cols=38 Identities=21% Similarity=0.254 Sum_probs=18.7
Q ss_pred CCCCeEEEEeCCCCHHHHHHHhhcCC--cccEEeecCccc
Q 024420 54 DFEKMSITASNDLNEETLDALNKQGH--EVDAFGIGTYLV 91 (268)
Q Consensus 54 G~~~vkIi~S~~Lde~~I~~l~~~g~--~id~fGVGT~Lv 91 (268)
|++-+-|..+..--.+.|+.+.++.. |-...|.||=+.
T Consensus 38 Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~ 77 (213)
T PRK06552 38 GIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGAGTVLD 77 (213)
T ss_pred CCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCC
Confidence 55555555555444555555544321 223456665543
No 188
>PLN02411 12-oxophytodienoate reductase
Probab=27.41 E-value=1.9e+02 Score=28.25 Aligned_cols=50 Identities=18% Similarity=0.194 Sum_probs=38.0
Q ss_pred eEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccCCCCccceEEEEeEECCccccc
Q 024420 58 MSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIK 115 (268)
Q Consensus 58 vkIi~S~~Lde~~I~~l~~~g~~id~fGVGT~Lvt~~~~p~l~~vyKLve~~g~P~~K 115 (268)
+.++++|+++.+..++++++|. .|..++|-.++..+ +++-|+. +|+|..+
T Consensus 314 ~pvi~~G~i~~~~a~~~l~~g~-aDlV~~gR~~iadP-----dl~~k~~--~g~~l~~ 363 (391)
T PLN02411 314 GTFMCSGGFTRELGMQAVQQGD-ADLVSYGRLFISNP-----DLVLRFK--LNAPLNK 363 (391)
T ss_pred CCEEEECCCCHHHHHHHHHcCC-CCEEEECHHHHhCc-----cHHHHHh--cCCCCCC
Confidence 3799999999999999888775 88999999998743 5555543 3666544
No 189
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=27.29 E-value=3.4e+02 Score=23.07 Aligned_cols=63 Identities=17% Similarity=0.139 Sum_probs=34.7
Q ss_pred HHHhhcCCCccEEeeCCC-ChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcCCcccEEee
Q 024420 13 LALNDLGYKAVGIRLDSG-DLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGI 86 (268)
Q Consensus 13 ~~L~~~G~~l~GVRlDSG-Dl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g~~id~fGV 86 (268)
+++++.|+.+. + .+++ |.......++.++.. +. +.-|+.+.+.+...++.+.+.|.|+..|+-
T Consensus 23 ~~a~~~g~~~~-~-~~~~~~~~~~~~~~~~l~~~--------~~-dgiii~~~~~~~~~l~~~~~~~ipvV~~~~ 86 (267)
T cd06283 23 DVCRAHGYQVL-V-CNSDNDPEKEKEYLESLLAY--------QV-DGLIVNPTGNNKELYQRLAKNGKPVVLVDR 86 (267)
T ss_pred HHHHHcCCEEE-E-EcCCCCHHHHHHHHHHHHHc--------Cc-CEEEEeCCCCChHHHHHHhcCCCCEEEEcC
Confidence 33556687763 2 3443 544333223332222 33 434666666676668888888888877753
No 190
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=27.27 E-value=2.9e+02 Score=23.94 Aligned_cols=64 Identities=19% Similarity=0.263 Sum_probs=36.6
Q ss_pred HHHHHhhcCCCccEEeeCC-CChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCC--HHHHHHHhhcCCcccEEe
Q 024420 11 VALALNDLGYKAVGIRLDS-GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN--EETLDALNKQGHEVDAFG 85 (268)
Q Consensus 11 Va~~L~~~G~~l~GVRlDS-GDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Ld--e~~I~~l~~~g~~id~fG 85 (268)
+.+++++.|+.+. ..++ +|.....+.++.+... + -+.-|+.+.+.+ ...+..+.+.|.|+..|+
T Consensus 21 i~~~~~~~g~~v~--~~~~~~~~~~~~~~i~~~~~~--------~-~Dgiii~~~~~~~~~~~i~~~~~~~iPvV~~~ 87 (282)
T cd06318 21 AKAHAKALGYELI--STDAQGDLTKQIADVEDLLTR--------G-VNVLIINPVDPEGLVPAVAAAKAAGVPVVVVD 87 (282)
T ss_pred HHHHHHHcCCEEE--EEcCCCCHHHHHHHHHHHHHc--------C-CCEEEEecCCccchHHHHHHHHHCCCCEEEec
Confidence 3445567788763 3455 4665554444444433 2 333455444433 356777778888887775
No 191
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=27.24 E-value=1.3e+02 Score=29.53 Aligned_cols=87 Identities=14% Similarity=0.137 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhhcCCCccEE--ee-C------CCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhh
Q 024420 6 PNFCAVALALNDLGYKAVGI--RL-D------SGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNK 76 (268)
Q Consensus 6 ~nai~Va~~L~~~G~~l~GV--Rl-D------SGDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~ 76 (268)
+++.+.++.|.+.|.++.-| |. | +||+.. +.+..++. ++.|++.|-.+.+....+.+
T Consensus 141 ~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~----i~~~ik~~----------~ipVIaG~V~t~e~A~~l~~ 206 (368)
T PRK08649 141 QRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLN----LKEFIYEL----------DVPVIVGGCVTYTTALHLMR 206 (368)
T ss_pred cCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHH----HHHHHHHC----------CCCEEEeCCCCHHHHHHHHH
Confidence 46778888888888776655 21 2 235433 33334331 35788888889999999999
Q ss_pred cCCcccEEeecC------cccccCCCCccceEEEEe
Q 024420 77 QGHEVDAFGIGT------YLVTCYAQAALGCVFKLV 106 (268)
Q Consensus 77 ~g~~id~fGVGT------~Lvt~~~~p~l~~vyKLv 106 (268)
.|+.....|+|. ..++..+.|.+..+++++
T Consensus 207 aGAD~V~VG~G~Gs~~~t~~~~g~g~p~~~ai~~~~ 242 (368)
T PRK08649 207 TGAAGVLVGIGPGAACTSRGVLGIGVPMATAIADVA 242 (368)
T ss_pred cCCCEEEECCCCCcCCCCcccCCCCcCHHHHHHHHH
Confidence 898655556663 223333456655555443
No 192
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=27.04 E-value=4e+02 Score=22.73 Aligned_cols=63 Identities=11% Similarity=0.044 Sum_probs=36.1
Q ss_pred HHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcCCcccEEee
Q 024420 14 ALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGI 86 (268)
Q Consensus 14 ~L~~~G~~l~GVRlDSGDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g~~id~fGV 86 (268)
++++.|+.+.-+. ...|.......++.+++. + -+.-|+.+...++..+..+...+.|+..++-
T Consensus 24 ~~~~~g~~~~~~~-~~~~~~~~~~~i~~l~~~--------~-vdgiii~~~~~~~~~~~~l~~~~ipvV~~~~ 86 (268)
T cd06298 24 IATMYKYNIILSN-SDNDKEKELKVLNNLLAK--------Q-VDGIIFMGGKISEEHREEFKRSPTPVVLAGS 86 (268)
T ss_pred HHHHcCCeEEEEe-CCCCHHHHHHHHHHHHHh--------c-CCEEEEeCCCCcHHHHHHHhcCCCCEEEEcc
Confidence 3556688875443 333544443334444332 2 4545666666777777887777777766653
No 193
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=27.03 E-value=2.1e+02 Score=26.15 Aligned_cols=73 Identities=22% Similarity=0.287 Sum_probs=41.1
Q ss_pred HHHHHHHHHhhcCCCccEEeeCCCChHH--HHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCC-HHHHHHHhhcCCcccE
Q 024420 7 NFCAVALALNDLGYKAVGIRLDSGDLAY--LSCEARKFFRTIEKEFGVPDFEKMSITASNDLN-EETLDALNKQGHEVDA 83 (268)
Q Consensus 7 nai~Va~~L~~~G~~l~GVRlDSGDl~~--ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Ld-e~~I~~l~~~g~~id~ 83 (268)
+.+.+|+.|.+.|.. +|-+|.+.... ..-++.+.+.++ ++++.||.+||+. .+.+.++.+.| .|+
T Consensus 149 ~~~~~a~~l~~aGad--~i~Vd~~~~g~~~a~~~~I~~i~~~--------~~~ipIIgNGgI~s~eda~e~l~~G--Ad~ 216 (231)
T TIGR00736 149 DELIDALNLVDDGFD--GIHVDAMYPGKPYADMDLLKILSEE--------FNDKIIIGNNSIDDIESAKEMLKAG--ADF 216 (231)
T ss_pred hHHHHHHHHHHcCCC--EEEEeeCCCCCchhhHHHHHHHHHh--------cCCCcEEEECCcCCHHHHHHHHHhC--CCe
Confidence 567888888888765 44445543211 112222223332 2335688888875 46666666666 455
Q ss_pred EeecCccc
Q 024420 84 FGIGTYLV 91 (268)
Q Consensus 84 fGVGT~Lv 91 (268)
.-||+.+.
T Consensus 217 VmvgR~~l 224 (231)
T TIGR00736 217 VSVARAIL 224 (231)
T ss_pred EEEcHhhc
Confidence 56666544
No 194
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=27.00 E-value=1.6e+02 Score=26.54 Aligned_cols=36 Identities=22% Similarity=0.348 Sum_probs=26.5
Q ss_pred CCeEEEEeCCCC-----------HHHHHHHhhcCCcccEEeecCcccc
Q 024420 56 EKMSITASNDLN-----------EETLDALNKQGHEVDAFGIGTYLVT 92 (268)
Q Consensus 56 ~~vkIi~S~~Ld-----------e~~I~~l~~~g~~id~fGVGT~Lvt 92 (268)
++++++.. +.+ .+-+++|.+.|.+||++|+=.++..
T Consensus 117 P~a~l~~N-dy~~~~~~~k~~~~~~~v~~l~~~g~~iDgiGlQ~H~~~ 163 (254)
T smart00633 117 PDAKLFYN-DYNTEEPNAKRQAIYELVKKLKAKGVPIDGIGLQSHLSL 163 (254)
T ss_pred CCCEEEEe-ccCCcCccHHHHHHHHHHHHHHHCCCccceeeeeeeecC
Confidence 67888885 333 4556677789999999999777653
No 195
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=26.91 E-value=3.2e+02 Score=23.63 Aligned_cols=64 Identities=16% Similarity=0.124 Sum_probs=36.8
Q ss_pred HHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcCCcccEEee
Q 024420 11 VALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGI 86 (268)
Q Consensus 11 Va~~L~~~G~~l~GVRlDSGDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g~~id~fGV 86 (268)
+.+++++.|+++.-+..+.. . ..++.+.+.. .-.+.-|+.+...+...+.++.+.|.|+..||-
T Consensus 32 i~~~~~~~g~~~~v~~~~~~---~-~~~~~~~l~~--------~~~dgiii~~~~~~~~~~~~~~~~~ipvV~~~~ 95 (275)
T cd06295 32 IADALAERGYDLLLSFVSSP---D-RDWLARYLAS--------GRADGVILIGQHDQDPLPERLAETGLPFVVWGR 95 (275)
T ss_pred HHHHHHHcCCEEEEEeCCch---h-HHHHHHHHHh--------CCCCEEEEeCCCCChHHHHHHHhCCCCEEEECC
Confidence 34456667888755544432 1 2334444433 224545555555667778888888888776653
No 196
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=26.89 E-value=3.1e+02 Score=25.53 Aligned_cols=73 Identities=16% Similarity=0.181 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHhhcCCCccEEeeC---------C--CChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHH
Q 024420 5 VPNFCAVALALNDLGYKAVGIRLD---------S--GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDA 73 (268)
Q Consensus 5 v~nai~Va~~L~~~G~~l~GVRlD---------S--GDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~ 73 (268)
...+++.|+.|++.|.+ .+|-- | |-....-+.+++..++ +|++ ++|.=+|+..+..
T Consensus 40 ~~~~~~~A~~lk~~g~~--~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~----~Gl~-------~~te~~d~~~~~~ 106 (266)
T PRK13398 40 EEQMVKVAEKLKELGVH--MLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDK----YNLP-------VVTEVMDTRDVEE 106 (266)
T ss_pred HHHHHHHHHHHHHcCCC--EEEEeeecCCCCCCccCCcHHHHHHHHHHHHHH----cCCC-------EEEeeCChhhHHH
Confidence 45689999999999876 46654 2 2233334444555444 4433 5667799999999
Q ss_pred HhhcCCcccEEeecCccccc
Q 024420 74 LNKQGHEVDAFGIGTYLVTC 93 (268)
Q Consensus 74 l~~~g~~id~fGVGT~Lvt~ 93 (268)
+.+. +|.+-||+..++.
T Consensus 107 l~~~---vd~~kIga~~~~n 123 (266)
T PRK13398 107 VADY---ADMLQIGSRNMQN 123 (266)
T ss_pred HHHh---CCEEEECcccccC
Confidence 9864 7899999999885
No 197
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=26.83 E-value=2.3e+02 Score=22.95 Aligned_cols=33 Identities=18% Similarity=0.196 Sum_probs=12.9
Q ss_pred HHHHHHhhcCCCccEEeeCCCChHHHHHHHHHH
Q 024420 10 AVALALNDLGYKAVGIRLDSGDLAYLSCEARKF 42 (268)
Q Consensus 10 ~Va~~L~~~G~~l~GVRlDSGDl~~ls~~~R~~ 42 (268)
.++..|++.|+++..+.+=.-|...+...+.+.
T Consensus 23 ~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~ 55 (133)
T cd00758 23 ALEALLEDLGCEVIYAGVVPDDADSIRAALIEA 55 (133)
T ss_pred HHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHH
Confidence 334444444444433333333333333333333
No 198
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=26.75 E-value=3.2e+02 Score=23.67 Aligned_cols=62 Identities=16% Similarity=0.082 Sum_probs=35.2
Q ss_pred HHHhhcCCCccEEeeCC-CChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCC--HHHHHHHhhcCCcccEEe
Q 024420 13 LALNDLGYKAVGIRLDS-GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN--EETLDALNKQGHEVDAFG 85 (268)
Q Consensus 13 ~~L~~~G~~l~GVRlDS-GDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Ld--e~~I~~l~~~g~~id~fG 85 (268)
+++++.|+++.-. ++ +|.......++.++.. + -+.-|+.+.+.+ ...+..+.+.+.|+..++
T Consensus 23 ~~a~~~g~~~~~~--~~~~~~~~~~~~i~~l~~~--------~-vdgiIi~~~~~~~~~~~i~~~~~~~iPvV~~~ 87 (273)
T cd06309 23 DAAEKRGFDLKFA--DAQQKQENQISAIRSFIAQ--------G-VDVIILAPVVETGWDPVLKEAKAAGIPVILVD 87 (273)
T ss_pred HHHHhcCCEEEEe--CCCCCHHHHHHHHHHHHHc--------C-CCEEEEcCCccccchHHHHHHHHCCCCEEEEe
Confidence 3345678887443 44 3555444445554443 3 343455555555 456778888887776665
No 199
>PRK05660 HemN family oxidoreductase; Provisional
Probab=26.59 E-value=2.4e+02 Score=27.23 Aligned_cols=70 Identities=9% Similarity=0.240 Sum_probs=51.6
Q ss_pred CCccEEeeCCCChHHHH-HHHHHHHHHHhHhhCCCCCCCeEEEEe-CCCCHHHHHHHhhcCCcccEEeecCc
Q 024420 20 YKAVGIRLDSGDLAYLS-CEARKFFRTIEKEFGVPDFEKMSITAS-NDLNEETLDALNKQGHEVDAFGIGTY 89 (268)
Q Consensus 20 ~~l~GVRlDSGDl~~ls-~~~R~~ld~~~~~l~~~G~~~vkIi~S-~~Lde~~I~~l~~~g~~id~fGVGT~ 89 (268)
.++.-|-+=-|.|..|+ ..+.++++.....+++..-..+.|-+. +.++++.+..|.+.|....++||=|.
T Consensus 57 ~~v~ti~~GGGtPs~l~~~~l~~ll~~l~~~~~~~~~~eit~e~np~~l~~e~l~~Lk~~Gv~risiGvqS~ 128 (378)
T PRK05660 57 REVHSIFIGGGTPSLFSAEAIQRLLDGVRARLPFAPDAEITMEANPGTVEADRFVGYQRAGVNRISIGVQSF 128 (378)
T ss_pred CceeEEEeCCCccccCCHHHHHHHHHHHHHhCCCCCCcEEEEEeCcCcCCHHHHHHHHHcCCCEEEeccCcC
Confidence 45678888889998874 447777777766676543345666665 78999999999999987777777553
No 200
>PRK15492 triosephosphate isomerase; Provisional
Probab=26.55 E-value=1.7e+02 Score=27.21 Aligned_cols=48 Identities=19% Similarity=0.278 Sum_probs=35.6
Q ss_pred HHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcCCcccEEeecCcc
Q 024420 38 EARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYL 90 (268)
Q Consensus 38 ~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g~~id~fGVGT~L 90 (268)
.+|+.|.+. ++-. .++++|+..|++++.-+.+|..+ ..||+|=||..=
T Consensus 197 ~Ir~~l~~~---~~~~-~~~irILYGGSV~~~N~~~l~~~-~diDG~LvG~aS 244 (260)
T PRK15492 197 VIKQCLIEL---FGDA-GDDIPVFYGGSVNAENANELFGQ-PHIDGLFIGRSA 244 (260)
T ss_pred HHHHHHHHH---hccc-cCceeEEEcCccCHHHHHHHhcC-CCCCEEEeehhh
Confidence 356665543 3322 46799999999999999999865 359999998753
No 201
>PTZ00333 triosephosphate isomerase; Provisional
Probab=26.47 E-value=1.6e+02 Score=27.35 Aligned_cols=54 Identities=24% Similarity=0.308 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccc
Q 024420 35 LSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (268)
Q Consensus 35 ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g~~id~fGVGT~Lvt 92 (268)
....+|+.+.+. ++-.--++++|+..|++++.-+.++..+ ..+|++.||+.-..
T Consensus 188 ~~~~IR~~l~~~---~~~~~~~~~~ILYGGSV~~~N~~~l~~~-~~vDG~LvG~asl~ 241 (255)
T PTZ00333 188 VHAFIRKWLAEK---VGADVAEATRIIYGGSVNEKNCKELIKQ-PDIDGFLVGGASLK 241 (255)
T ss_pred HHHHHHHHHHHh---hcccccccceEEEcCCCCHHHHHHHhcC-CCCCEEEEehHhhh
Confidence 334456655543 2211124689999999999999999754 34999999987653
No 202
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=26.08 E-value=4.8e+02 Score=23.61 Aligned_cols=69 Identities=14% Similarity=0.105 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhhcCCCccEEeeCCCC---h---HHHHHHHHHHHHHHhHhhCCCCCCCeEEEEe-CCCCHHHHHHHhhcC
Q 024420 6 PNFCAVALALNDLGYKAVGIRLDSGD---L---AYLSCEARKFFRTIEKEFGVPDFEKMSITAS-NDLNEETLDALNKQG 78 (268)
Q Consensus 6 ~nai~Va~~L~~~G~~l~GVRlDSGD---l---~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S-~~Lde~~I~~l~~~g 78 (268)
...++.++.+.+.|++-.- =.+||- . ..+...++++..+ + | +++.+| |-++++.++.|.+.|
T Consensus 65 eei~~~~~~~~~~g~~~~~-l~~~g~~~~~~~~~~~~~~i~~~~~~----~---~---i~~~~~~g~~~~e~l~~Lk~aG 133 (296)
T TIGR00433 65 DEVLEEARKAKAAGATRFC-LVASGRGPKDREFMEYVEAMVQIVEE----M---G---LKTCATLGLLDPEQAKRLKDAG 133 (296)
T ss_pred HHHHHHHHHHHHCCCCEEE-EEEecCCCChHHHHHHHHHHHHHHHh----C---C---CeEEecCCCCCHHHHHHHHHcC
Confidence 3456666666667754211 234432 1 2344444444433 1 2 344455 678999999999888
Q ss_pred CcccEEeec
Q 024420 79 HEVDAFGIG 87 (268)
Q Consensus 79 ~~id~fGVG 87 (268)
. +.+.+|
T Consensus 134 ~--~~v~i~ 140 (296)
T TIGR00433 134 L--DYYNHN 140 (296)
T ss_pred C--CEEEEc
Confidence 4 555555
No 203
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=26.03 E-value=1.1e+02 Score=24.14 Aligned_cols=35 Identities=20% Similarity=0.404 Sum_probs=26.5
Q ss_pred CCCCeEEEEeCCCCHH------HHHHHhhcCCcccEEeecC
Q 024420 54 DFEKMSITASNDLNEE------TLDALNKQGHEVDAFGIGT 88 (268)
Q Consensus 54 G~~~vkIi~S~~Lde~------~I~~l~~~g~~id~fGVGT 88 (268)
+-.++-|++|+|.+.. .++.+.+++.++..+|+|.
T Consensus 102 ~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~v~v~~i~~g~ 142 (161)
T cd01450 102 NVPKVIIVLTDGRSDDGGDPKEAAAKLKDEGIKVFVVGVGP 142 (161)
T ss_pred CCCeEEEEECCCCCCCCcchHHHHHHHHHCCCEEEEEeccc
Confidence 4556788999886643 4666667788999999997
No 204
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=26.03 E-value=96 Score=28.96 Aligned_cols=55 Identities=27% Similarity=0.395 Sum_probs=42.2
Q ss_pred cEEeeCCCChHHHHHHHHHHHHHH--hHhhCCCCCCCeEEEEeCCCCHHHHHHHhhc
Q 024420 23 VGIRLDSGDLAYLSCEARKFFRTI--EKEFGVPDFEKMSITASNDLNEETLDALNKQ 77 (268)
Q Consensus 23 ~GVRlDSGDl~~ls~~~R~~ld~~--~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~ 77 (268)
.=||+-+||..|-..++.-++++. -.++|.+|.--=-+-.-|.||...+++|.+.
T Consensus 56 ~MIRPRgGdFvY~~~E~~iM~~DI~~~~~lG~~GVV~G~lt~dg~iD~~~le~Li~a 112 (241)
T COG3142 56 VMIRPRGGDFVYSDDELEIMLEDIRLARELGVQGVVLGALTADGNIDMPRLEKLIEA 112 (241)
T ss_pred EEEecCCCCcccChHHHHHHHHHHHHHHHcCCCcEEEeeecCCCccCHHHHHHHHHH
Confidence 369999999999888888888776 4556666633323556789999999999864
No 205
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=25.92 E-value=2e+02 Score=26.91 Aligned_cols=56 Identities=20% Similarity=0.273 Sum_probs=42.1
Q ss_pred ChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccc
Q 024420 31 DLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (268)
Q Consensus 31 Dl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g~~id~fGVGT~Lvt 92 (268)
|.......+|..+.+. ++.. .+++|...|+++..-+.++..+ -.+|++-||+.-.-
T Consensus 181 ~a~~v~~~Ir~~~~~~---~~~~--~~v~IlYGGSV~~~N~~e~~~~-~~idG~LVGgAslk 236 (251)
T COG0149 181 DAEEVHAFIRAVLAEL---FGAE--EKVRILYGGSVKPGNAAELAAQ-PDIDGALVGGASLK 236 (251)
T ss_pred HHHHHHHHHHHHHHHh---cCCC--CCeEEEEeCCcChhHHHHHhcC-CCCCeEEEcceeec
Confidence 4445555577777664 3333 7899999999999999999854 45999999987654
No 206
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=25.79 E-value=3.8e+02 Score=24.23 Aligned_cols=36 Identities=6% Similarity=0.142 Sum_probs=27.8
Q ss_pred CeEEEEeCCCC-------HHHHHHHhhcCCcccEEeecCcccccC
Q 024420 57 KMSITASNDLN-------EETLDALNKQGHEVDAFGIGTYLVTCY 94 (268)
Q Consensus 57 ~vkIi~S~~Ld-------e~~I~~l~~~g~~id~fGVGT~Lvt~~ 94 (268)
.+.|+++||++ .+.+.++.+.|+. ++-+|.++.+..
T Consensus 192 ~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~--Gia~g~~i~~~~ 234 (258)
T TIGR01949 192 PAPVVVAGGPKTNSDREFLQMIKDAMEAGAA--GVAVGRNIFQHD 234 (258)
T ss_pred CCcEEEecCCCCCCHHHHHHHHHHHHHcCCc--EEehhhHhhcCC
Confidence 46789999998 6677777788865 778888887654
No 207
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=25.60 E-value=70 Score=31.12 Aligned_cols=36 Identities=6% Similarity=0.134 Sum_probs=31.0
Q ss_pred CeEEEEeCCCCHHHHHHHhhcCCcccEEeecCcccccC
Q 024420 57 KMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCY 94 (268)
Q Consensus 57 ~vkIi~S~~Lde~~I~~l~~~g~~id~fGVGT~Lvt~~ 94 (268)
++.+|+-||+|++.+.++.+.| .++++|++.+.++.
T Consensus 294 ~iPv~AiGGI~~~ni~~l~~~G--a~gVAvisaI~~a~ 329 (347)
T PRK02615 294 PIPWFAIGGIDKSNIPEVLQAG--AKRVAVVRAIMGAE 329 (347)
T ss_pred CCCEEEECCCCHHHHHHHHHcC--CcEEEEeHHHhCCC
Confidence 4689999999999999999877 67899999998653
No 208
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=25.59 E-value=3.2e+02 Score=24.15 Aligned_cols=65 Identities=12% Similarity=0.097 Sum_probs=37.3
Q ss_pred HHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCC--CHHHHHHHhhcCCcccEEe
Q 024420 12 ALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDL--NEETLDALNKQGHEVDAFG 85 (268)
Q Consensus 12 a~~L~~~G~~l~GVRlDSGDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~L--de~~I~~l~~~g~~id~fG 85 (268)
.+++++.|+.+.-+-...++.......+..++.. + .+.-|+++.+. +...+..+.+.|.|+..|+
T Consensus 22 ~~~a~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~--------~-~dgiii~~~~~~~~~~~i~~~~~~~iPvV~~~ 88 (294)
T cd06316 22 KDEFAKLGIEVVATTDAQFDPAKQVADIETTISQ--------K-PDIIISIPVDPVSTAAAYKKVAEAGIKLVFMD 88 (294)
T ss_pred HHHHHHcCCEEEEecCCCCCHHHHHHHHHHHHHh--------C-CCEEEEcCCCchhhhHHHHHHHHcCCcEEEec
Confidence 3456677887742222335665555555555543 3 34345555443 3566788888888877765
No 209
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=25.59 E-value=2e+02 Score=29.67 Aligned_cols=55 Identities=16% Similarity=0.190 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHH-hHhhCCCCCCCeEEEEeCCCCHHHHHHHhhc-C-CcccEEeecCc
Q 024420 33 AYLSCEARKFFRTI-EKEFGVPDFEKMSITASNDLNEETLDALNKQ-G-HEVDAFGIGTY 89 (268)
Q Consensus 33 ~~ls~~~R~~ld~~-~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~-g-~~id~fGVGT~ 89 (268)
.+...++++.|.++ ..++..+ ..+-++.|||||=..|..+.++ + .++..|-||..
T Consensus 239 ~~~~~~l~~~L~~AV~~rl~sd--~pvg~~LSGGlDSs~Iaa~~~~~~~~~l~tftigf~ 296 (589)
T TIGR03104 239 ADWQDAILEALRLAVKRRLVAD--VPVGVLLSGGLDSSLIVGLLAEAGVDGLRTFSIGFE 296 (589)
T ss_pred HHHHHHHHHHHHHHHHHHhhcC--CceeEEecCCccHHHHHHHHHHhcCCCceEEEEEec
Confidence 34455678888887 6666432 5678999999999999988753 2 35778877753
No 210
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=25.54 E-value=3.7e+02 Score=26.40 Aligned_cols=63 Identities=11% Similarity=0.015 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcCC
Q 024420 6 PNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGH 79 (268)
Q Consensus 6 ~nai~Va~~L~~~G~~l~GVRlDSGDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g~ 79 (268)
-.++.+++.|.++|.++.+|..|+++.. +...+++++.+. .. .+++.+.-|.+.++++.+...
T Consensus 310 ~~~~~l~~~L~elG~~~~~v~~~~~~~~-~~~~l~~~~~~~---------~~-~~~v~~~~d~~e~~~~l~~~~ 372 (429)
T cd03466 310 DFVVAITRFVLENGMVPVLIATGSESKK-LKEKLEEDLKEY---------VE-KCVILDGADFFDIESYAKELK 372 (429)
T ss_pred HHHHHHHHHHHHCCCEEEEEEeCCCChH-HHHHHHHHHHhc---------CC-ceEEEeCCCHHHHHHHHHhcC
Confidence 3567788888888988888888876532 222333334331 11 344556677888888876543
No 211
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=25.42 E-value=2.9e+02 Score=27.60 Aligned_cols=53 Identities=15% Similarity=0.192 Sum_probs=38.6
Q ss_pred hhcCCCccEEeeCCCChH-------HHHHHHHHHHHHHhHhhCCCCCCCeEEEEeC---CCCHHHHHHHhhc
Q 024420 16 NDLGYKAVGIRLDSGDLA-------YLSCEARKFFRTIEKEFGVPDFEKMSITASN---DLNEETLDALNKQ 77 (268)
Q Consensus 16 ~~~G~~l~GVRlDSGDl~-------~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~---~Lde~~I~~l~~~ 77 (268)
...|..+..||+.|||+. ..++-+.+.++.. .++ -|+.|. .-|.+.++..++.
T Consensus 150 ~~~~aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~av-------~vP--LIL~gsg~~~kD~eVLeaaLe~ 212 (389)
T TIGR00381 150 KEFGADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQAV-------DVP--IVIGGSGNPEKDPLVLEKAAEV 212 (389)
T ss_pred HHhCCCEEEEEecCCCccccccCHHHHHHHHHHHHHhC-------CCC--EEEeCCCCCcCCHHHHHHHHHH
Confidence 356888999999999998 8888888888774 111 244444 5678888777753
No 212
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=25.41 E-value=2.4e+02 Score=27.57 Aligned_cols=70 Identities=13% Similarity=0.116 Sum_probs=42.3
Q ss_pred HHHHHHHHHhhcCCCccEEeeCCCChH---HHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcCCcc
Q 024420 7 NFCAVALALNDLGYKAVGIRLDSGDLA---YLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEV 81 (268)
Q Consensus 7 nai~Va~~L~~~G~~l~GVRlDSGDl~---~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g~~i 81 (268)
-|+++.++|++.|.+. -|=.=||+.- .--+++.++||+.=++++ -+ --|++|||-+-+.+--+.+.-.|+
T Consensus 52 ~avkiydeL~~~Gedv-eVA~VsG~~~~~v~ad~~I~~qld~vl~~~~---~~-~~i~VsDGaeDE~vlPiIqSr~~V 124 (344)
T PF04123_consen 52 GAVKIYDELKAEGEDV-EVAVVSGSPDVGVEADRKIAEQLDEVLSKFD---PD-SAIVVSDGAEDERVLPIIQSRVPV 124 (344)
T ss_pred HHHHHHHHHHhcCCCe-EEEEEECCCCCchhhHHHHHHHHHHHHHhCC---CC-EEEEEecChhhhhhhHhhhccCce
Confidence 4788999999888765 3333355431 122335556665533333 23 378899998877777776543333
No 213
>PTZ00413 lipoate synthase; Provisional
Probab=25.27 E-value=2.7e+02 Score=27.91 Aligned_cols=65 Identities=17% Similarity=0.180 Sum_probs=43.6
Q ss_pred HHHHHHHHhhcCCCc---cEE-eeC--CCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEe-CCC--CHHHHHHHhhcC
Q 024420 8 FCAVALALNDLGYKA---VGI-RLD--SGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITAS-NDL--NEETLDALNKQG 78 (268)
Q Consensus 8 ai~Va~~L~~~G~~l---~GV-RlD--SGDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S-~~L--de~~I~~l~~~g 78 (268)
-.++|++.++.|.+. ..+ |-| -|....++.-++++=.. .+++.|-++ +++ |++.++.|.+.|
T Consensus 182 p~~vA~av~~~Gl~~~VVTSv~RDDL~D~ga~~~a~~I~~Ir~~---------~p~~~IevligDf~g~~e~l~~L~eAG 252 (398)
T PTZ00413 182 PEKVAKAVAEMGVDYIVMTMVDRDDLPDGGASHVARCVELIKES---------NPELLLEALVGDFHGDLKSVEKLANSP 252 (398)
T ss_pred HHHHHHHHHHcCCCEEEEEEEcCCCCChhhHHHHHHHHHHHHcc---------CCCCeEEEcCCccccCHHHHHHHHhcC
Confidence 357888888888763 344 533 35555555444444433 257899999 778 999999999988
Q ss_pred Ccc
Q 024420 79 HEV 81 (268)
Q Consensus 79 ~~i 81 (268)
..+
T Consensus 253 ~dv 255 (398)
T PTZ00413 253 LSV 255 (398)
T ss_pred CCE
Confidence 554
No 214
>PF05985 EutC: Ethanolamine ammonia-lyase light chain (EutC); InterPro: IPR009246 This family consists of several bacterial ethanolamine ammonia-lyase light chain (EutC) sequences. Ethanolamine ammonia-lyase is a bacterial enzyme that catalyses the adenosylcobalamin-dependent conversion of certain vicinal amino alcohols to oxo compounds and ammonia [].; GO: 0008851 ethanolamine ammonia-lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3ABO_B 3ABR_B 3ABS_B 3ANY_B 3AO0_D 3ABQ_B.
Probab=25.11 E-value=39 Score=31.42 Aligned_cols=35 Identities=20% Similarity=0.291 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHH
Q 024420 34 YLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDA 73 (268)
Q Consensus 34 ~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~ 73 (268)
.|+.+.++.|.+.. .++ .++.|++||||+-..|..
T Consensus 86 ~L~~~s~~~L~~~~----~~~-~Dv~iViaDGLSa~Av~~ 120 (237)
T PF05985_consen 86 RLSEESRARLKELC----EKG-PDVQIVIADGLSARAVEA 120 (237)
T ss_dssp SB-HHHHHHHHHHS-----SS--SEEEEEE-TT-HHHHHT
T ss_pred cCCHHHHHHHHHhc----CCC-CCEEEEEcCCCCHHHHHH
Confidence 44566677777752 123 789999999999988843
No 215
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=25.11 E-value=1.2e+02 Score=24.95 Aligned_cols=35 Identities=20% Similarity=0.287 Sum_probs=25.3
Q ss_pred CCCCeEEEEeCCCCHHH----HHHHhhcCCcccEEeecC
Q 024420 54 DFEKMSITASNDLNEET----LDALNKQGHEVDAFGIGT 88 (268)
Q Consensus 54 G~~~vkIi~S~~Lde~~----I~~l~~~g~~id~fGVGT 88 (268)
+.+++-|++|||-.... ...+.+.|..+..+|+|.
T Consensus 102 ~~~k~iillTDG~~~~~~~~~a~~lk~~gi~i~~ig~g~ 140 (164)
T cd01482 102 GVPKVVILITDGKSQDDVELPARVLRNLGVNVFAVGVKD 140 (164)
T ss_pred CCCEEEEEEcCCCCCchHHHHHHHHHHCCCEEEEEecCc
Confidence 46678899999877433 345666788888888875
No 216
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=25.07 E-value=3.2e+02 Score=25.81 Aligned_cols=38 Identities=16% Similarity=0.249 Sum_probs=29.7
Q ss_pred CeEEEEeCCCC-HHHHHHHhhcCCcccEEeecCcccccCCC
Q 024420 57 KMSITASNDLN-EETLDALNKQGHEVDAFGIGTYLVTCYAQ 96 (268)
Q Consensus 57 ~vkIi~S~~Ld-e~~I~~l~~~g~~id~fGVGT~Lvt~~~~ 96 (268)
++.|+++||+. ...+......|+ |+.-|||.+..+...
T Consensus 161 ~iPviaaGGI~~~~~~~~al~~GA--~gV~iGt~f~~t~Es 199 (307)
T TIGR03151 161 SIPVIAAGGIADGRGMAAAFALGA--EAVQMGTRFLCAKEC 199 (307)
T ss_pred CCCEEEECCCCCHHHHHHHHHcCC--CEeecchHHhccccc
Confidence 35799999995 555888887785 788999999886654
No 217
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=24.81 E-value=3.7e+02 Score=23.60 Aligned_cols=35 Identities=6% Similarity=0.128 Sum_probs=23.8
Q ss_pred EEEEeCCCCH-------HHHHHHhhcCCcccEEeecCcccccCC
Q 024420 59 SITASNDLNE-------ETLDALNKQGHEVDAFGIGTYLVTCYA 95 (268)
Q Consensus 59 kIi~S~~Lde-------~~I~~l~~~g~~id~fGVGT~Lvt~~~ 95 (268)
.|+++||+.. +.+.++.+.|+. ++-+|+++.++.+
T Consensus 181 pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~--gv~vg~~i~~~~d 222 (235)
T cd00958 181 PVVIAGGPKKDSEEEFLKMVYDAMEAGAA--GVAVGRNIFQRPD 222 (235)
T ss_pred CEEEeCCCCCCCHHHHHHHHHHHHHcCCc--EEEechhhhcCCC
Confidence 4678888633 447777777754 7778888886543
No 218
>PRK00876 nadE NAD synthetase; Reviewed
Probab=24.72 E-value=1.8e+02 Score=28.06 Aligned_cols=57 Identities=14% Similarity=0.052 Sum_probs=40.5
Q ss_pred CChHHHHHHHHHHHHHH-hHhhCCCCCCCeEEEEeCCCCHHHHHHHhhc-CCcccEEeecCc
Q 024420 30 GDLAYLSCEARKFFRTI-EKEFGVPDFEKMSITASNDLNEETLDALNKQ-GHEVDAFGIGTY 89 (268)
Q Consensus 30 GDl~~ls~~~R~~ld~~-~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~-g~~id~fGVGT~ 89 (268)
.|+.....++++.|.+. ..++ +...+-+..|||+|=-.+..+..+ ......|+|+-.
T Consensus 10 ~~~~~~~e~i~~~l~~~V~~~~---~~~~VvVgLSGGIDSSvvaaLa~~a~g~~~v~av~~~ 68 (326)
T PRK00876 10 IDAAAEAERIRAAIREQVRGTL---RRRGVVLGLSGGIDSSVTAALCVRALGKERVYGLLMP 68 (326)
T ss_pred CCHHHHHHHHHHHHHHHHHHHc---CCCCEEEEccCCHHHHHHHHHHHHhhCCCcEEEEEec
Confidence 56777777888888777 4334 345799999999999999888743 122456776654
No 219
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
Probab=24.64 E-value=2.2e+02 Score=29.27 Aligned_cols=56 Identities=14% Similarity=0.063 Sum_probs=40.3
Q ss_pred ChHHHHHHHHHHHHHH-hHhhCCCCCCCeEEEEeCCCCHHHHHHHhhc--CCcccEEeecC
Q 024420 31 DLAYLSCEARKFFRTI-EKEFGVPDFEKMSITASNDLNEETLDALNKQ--GHEVDAFGIGT 88 (268)
Q Consensus 31 Dl~~ls~~~R~~ld~~-~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~--g~~id~fGVGT 88 (268)
+..+...++++.|.++ ..++..+ ..+-++.|||||=..|..+..+ +.++.+|-+|.
T Consensus 235 ~~~e~~e~l~~~l~~aV~~rl~~d--~~vg~~LSGGlDSs~Iaa~~~~~~~~~i~t~s~~~ 293 (628)
T TIGR03108 235 SEADALAELIERLREAVRSRMVAD--VPLGAFLSGGVDSSAVVALMAGLSDTPVNTCSIAF 293 (628)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcC--CcceEeecCCccHHHHHHHHHHhcCCCCcEEEEec
Confidence 3455667788888887 5555432 3578999999999999887643 24677787765
No 220
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=24.37 E-value=3e+02 Score=26.14 Aligned_cols=80 Identities=14% Similarity=0.121 Sum_probs=33.9
Q ss_pred HHHHHHHHHhhc-C-CCccEEeeCCC-ChHHHHHHHHHHHHHHhH-hhCCCCCCCeEEEEeCC-CCHHHHHHHhhcCCcc
Q 024420 7 NFCAVALALNDL-G-YKAVGIRLDSG-DLAYLSCEARKFFRTIEK-EFGVPDFEKMSITASND-LNEETLDALNKQGHEV 81 (268)
Q Consensus 7 nai~Va~~L~~~-G-~~l~GVRlDSG-Dl~~ls~~~R~~ld~~~~-~l~~~G~~~vkIi~S~~-Lde~~I~~l~~~g~~i 81 (268)
-+.++.+++++. + .-...|++-.| |......++-+++.++|. .+.+.|-+... ..|+. +|.+.|.++.+. ..+
T Consensus 118 ~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~-~y~g~~~~~~~i~~ik~~-~~i 195 (312)
T PRK10550 118 LIYQGAKAMREAVPAHLPVTVKVRLGWDSGERKFEIADAVQQAGATELVVHGRTKED-GYRAEHINWQAIGEIRQR-LTI 195 (312)
T ss_pred HHHHHHHHHHHhcCCCcceEEEEECCCCCchHHHHHHHHHHhcCCCEEEECCCCCcc-CCCCCcccHHHHHHHHhh-cCC
Confidence 344555555543 2 12446775544 211123455555666521 11222211100 22332 355666666543 235
Q ss_pred cEEeecC
Q 024420 82 DAFGIGT 88 (268)
Q Consensus 82 d~fGVGT 88 (268)
-.+|.|.
T Consensus 196 PVi~nGd 202 (312)
T PRK10550 196 PVIANGE 202 (312)
T ss_pred cEEEeCC
Confidence 5566664
No 221
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heterodimer (composed of Ku70 and Ku80) contributes to genomic integrity through its ability to bind DNA double-strand breaks (DSB) in a preferred orientation. DSB's are repaired by either homologues recombination or non-homologues end joining and facilitate repair by the non-homologous end-joining pathway (NHEJ). The Ku heterodimer is required for accurate process that tends to preserve the sequence at the junction. Ku78 is found in all three kingdoms of life. However, only the eukaryotic proteins have a vWA domain fused to them at their N-termini. The vWA domain is not involved in DNA binding but may very likey mediate Ku78's interactions with other proteins. Members of this subgroup lack the conserved MIDAS motif.
Probab=24.13 E-value=2.4e+02 Score=24.56 Aligned_cols=58 Identities=16% Similarity=0.123 Sum_probs=35.7
Q ss_pred CCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCH------------HHHHHHhhcCCcccEEeecCcc
Q 024420 29 SGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNE------------ETLDALNKQGHEVDAFGIGTYL 90 (268)
Q Consensus 29 SGDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde------------~~I~~l~~~g~~id~fGVGT~L 90 (268)
++++...-..+.++|..... +-..+.-+++||+-|. ..+.+|.+.|..+..||+|+.-
T Consensus 105 ~~~l~~aL~~a~~~~~~~~~----~~~~k~IvL~TDg~~p~~~~~~~~~~~~~~a~~l~~~gI~i~~i~i~~~~ 174 (218)
T cd01458 105 QVSLSDALWVCLDLFSKGKK----KKSHKRIFLFTNNDDPHGGDSIKDSQAAVKAEDLKDKGIELELFPLSSPG 174 (218)
T ss_pred CccHHHHHHHHHHHHHhccc----cccccEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCCC
Confidence 45665555556666665211 1134567888998775 2344455567888899988753
No 222
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=24.01 E-value=3.6e+02 Score=26.33 Aligned_cols=35 Identities=14% Similarity=0.240 Sum_probs=28.1
Q ss_pred eEEEEeC-CCCHHHHHHHhhcCCcccEEeecCccccc
Q 024420 58 MSITASN-DLNEETLDALNKQGHEVDAFGIGTYLVTC 93 (268)
Q Consensus 58 vkIi~S~-~Lde~~I~~l~~~g~~id~fGVGT~Lvt~ 93 (268)
+.++++| --+.+..+++++.| -.|.-|+|.-++..
T Consensus 289 ~pvi~~G~i~~~~~Ae~~l~~g-~aDlVa~gR~~lad 324 (363)
T COG1902 289 IPVIAVGGINDPEQAEEILASG-RADLVAMGRPFLAD 324 (363)
T ss_pred CCEEEeCCCCCHHHHHHHHHcC-CCCEEEechhhhcC
Confidence 5677777 46888888888888 78899999988874
No 223
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=23.93 E-value=5.4e+02 Score=23.20 Aligned_cols=29 Identities=14% Similarity=0.240 Sum_probs=22.0
Q ss_pred CchHHHHHHHHHHhhcCCCccEEeeCCCChH
Q 024420 3 SGVPNFCAVALALNDLGYKAVGIRLDSGDLA 33 (268)
Q Consensus 3 sGv~nai~Va~~L~~~G~~l~GVRlDSGDl~ 33 (268)
.|+.+.-.+.+.+++.+ ..-+-+|+||..
T Consensus 27 gg~~~l~~~i~~~r~~~--~~~l~ld~GD~~ 55 (277)
T cd07410 27 GGLARVATLIKKARAEN--PNTLLIDNGDTI 55 (277)
T ss_pred cCHHHHHHHHHHHHhcC--CCeEEEeCCccC
Confidence 47788888888887664 346889999973
No 224
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=23.89 E-value=1.8e+02 Score=26.20 Aligned_cols=73 Identities=22% Similarity=0.218 Sum_probs=46.7
Q ss_pred HHHHHHHHHhhcCCC-ccEEeeCC----CChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCC-CHHHHHHHhhcCCc
Q 024420 7 NFCAVALALNDLGYK-AVGIRLDS----GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDL-NEETLDALNKQGHE 80 (268)
Q Consensus 7 nai~Va~~L~~~G~~-l~GVRlDS----GDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~L-de~~I~~l~~~g~~ 80 (268)
+.+++|+.+.+.|.+ +.-|=+|. ++-..+ ++++-.+ -.+.+.+.||+ +.+.++.+...|+.
T Consensus 33 dp~~~a~~~~~~g~~~l~ivDLd~~~g~~~n~~~---i~~i~~~----------~~~pv~vgGGirs~edv~~~l~~Ga~ 99 (241)
T PRK14024 33 SPLDAALAWQRDGAEWIHLVDLDAAFGRGSNREL---LAEVVGK----------LDVKVELSGGIRDDESLEAALATGCA 99 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEeccccCCCCccHHH---HHHHHHH----------cCCCEEEcCCCCCHHHHHHHHHCCCC
Confidence 677888888888865 33444442 222222 2222222 23578888888 47888888888864
Q ss_pred ccEEeecCcccccC
Q 024420 81 VDAFGIGTYLVTCY 94 (268)
Q Consensus 81 id~fGVGT~Lvt~~ 94 (268)
..++||.+.++.
T Consensus 100 --kvviGs~~l~~p 111 (241)
T PRK14024 100 --RVNIGTAALENP 111 (241)
T ss_pred --EEEECchHhCCH
Confidence 568999998743
No 225
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=23.88 E-value=1.7e+02 Score=28.81 Aligned_cols=60 Identities=15% Similarity=0.197 Sum_probs=42.8
Q ss_pred HHHHHHHhHhhCCCCCCCeEEEEeCCCC-HHHHHHHhhcCCcccEEeecCcccccCCCCccceEEEEeEE
Q 024420 40 RKFFRTIEKEFGVPDFEKMSITASNDLN-EETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVEI 108 (268)
Q Consensus 40 R~~ld~~~~~l~~~G~~~vkIi~S~~Ld-e~~I~~l~~~g~~id~fGVGT~Lvt~~~~p~l~~vyKLve~ 108 (268)
++.+|+. |-.++.||++|++. -..|......| .|+-.|||.++.....|.-++-+-..+.
T Consensus 245 ~~~~~e~-------g~r~vpVIAdGGI~tg~di~kAlAlG--AdaV~iGt~~a~a~Eapg~~~~w~~~~~ 305 (369)
T TIGR01304 245 RDYLDET-------GGRYVHVIADGGIETSGDLVKAIACG--ADAVVLGSPLARAAEAPGRGYFWPAAAA 305 (369)
T ss_pred HHHHHhc-------CCCCceEEEeCCCCCHHHHHHHHHcC--CCEeeeHHHHHhhhcCCCCCCccchhhc
Confidence 4466765 44568999999984 55666666677 5788899999988777776665554443
No 226
>TIGR02134 transald_staph transaldolase. This small family of proteins is a member of the transaldolase sybfamily represented by pfam00923. Coxiella and Staphylococcus lack members of the known transaldolase equivalog families and appear to require a transaldolase activity for completion of the pentose phosphate pathway.
Probab=23.82 E-value=1.6e+02 Score=27.13 Aligned_cols=46 Identities=15% Similarity=0.133 Sum_probs=38.4
Q ss_pred ee-CCC-ChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcCCc
Q 024420 26 RL-DSG-DLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHE 80 (268)
Q Consensus 26 Rl-DSG-Dl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g~~ 80 (268)
|+ |.| |...+.++++++++.. .+++|++..==+...+.+....|+.
T Consensus 147 R~dd~g~D~~~~i~~i~~i~~~~---------~~tkILaAS~R~~~~v~~a~~~Gad 194 (236)
T TIGR02134 147 RIADTGVDPEPHMREALEIVAQK---------PGVELLWASPRELFNIIQADRIGCD 194 (236)
T ss_pred hhhhcCCCcHHHHHHHHHHHHhC---------CCcEEEEEccCCHHHHHHHHHcCCC
Confidence 88 775 9999999999999872 4789999998899888888776643
No 227
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=23.70 E-value=2.5e+02 Score=26.73 Aligned_cols=33 Identities=18% Similarity=0.191 Sum_probs=19.8
Q ss_pred CeEEEEeCCC-CHHHHHHHhhcCCcccEEeecCcccc
Q 024420 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVT 92 (268)
Q Consensus 57 ~vkIi~S~~L-de~~I~~l~~~g~~id~fGVGT~Lvt 92 (268)
++.|+++||+ +.+.+.++.+ + .|+.-||+.+..
T Consensus 205 ~iPVI~nGgI~s~eda~~~l~-~--aDgVmIGRa~l~ 238 (333)
T PRK11815 205 HLTIEINGGIKTLEEAKEHLQ-H--VDGVMIGRAAYH 238 (333)
T ss_pred CCeEEEECCcCCHHHHHHHHh-c--CCEEEEcHHHHh
Confidence 4566666666 5555555554 2 566666666655
No 228
>KOG2799 consensus Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=23.64 E-value=1.4e+02 Score=29.82 Aligned_cols=46 Identities=24% Similarity=0.324 Sum_probs=33.8
Q ss_pred HHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHH
Q 024420 9 CAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEET 70 (268)
Q Consensus 9 i~Va~~L~~~G~~l~GVRlDSGDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~ 70 (268)
+..+++|. ...+ .-+|+-++. +..++.++.. +-++|+.+++||+..
T Consensus 363 v~aar~l~-~~ip-iv~rlqgt~----v~~ak~~i~~----------sgmri~~~deldeaa 408 (434)
T KOG2799|consen 363 VLAARELE-LNIP-IVVRLQGTR----VEAAKPIINT----------SGMRIRSFDELDEAA 408 (434)
T ss_pred hhhhhhhh-cCCC-EEEEecCCc----hhhhhhhHhh----------cCceEEechhhhHHh
Confidence 34556653 3344 489999998 6677777766 568999999999975
No 229
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=23.42 E-value=4e+02 Score=22.62 Aligned_cols=64 Identities=16% Similarity=0.150 Sum_probs=33.9
Q ss_pred HHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcCCcccEEe
Q 024420 12 ALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFG 85 (268)
Q Consensus 12 a~~L~~~G~~l~GVRlDSGDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g~~id~fG 85 (268)
..++++.|+.+.-. .+.+.......+++++.. +.-+.-|+.+...+...+..+.+.+.|+..|+
T Consensus 26 ~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~--------~~vdgiii~~~~~~~~~~~~~~~~~ipvV~~~ 89 (268)
T cd06271 26 SEALAEHGYDLVLL--PVDPDEDPLEVYRRLVES--------GLVDGVIISRTRPDDPRVALLLERGFPFVTHG 89 (268)
T ss_pred HHHHHHCCceEEEe--cCCCcHHHHHHHHHHHHc--------CCCCEEEEecCCCCChHHHHHHhcCCCEEEEC
Confidence 34456678775322 333323333445555543 22343455554445456777777777777664
No 230
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=23.39 E-value=1.6e+02 Score=27.83 Aligned_cols=65 Identities=22% Similarity=0.267 Sum_probs=40.5
Q ss_pred CCCccEEee-CCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCC-CHHHHHHHhhcCCcccEEeecCcccccCCC
Q 024420 19 GYKAVGIRL-DSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTCYAQ 96 (268)
Q Consensus 19 G~~l~GVRl-DSGDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~L-de~~I~~l~~~g~~id~fGVGT~Lvt~~~~ 96 (268)
|..--|=|- +.+++..|..++++.++ +.|++.||| |-..+...+..| .++.=+||.++.+...
T Consensus 164 G~eAGGH~g~~~~~~~~L~~~v~~~~~-------------iPViaAGGI~dg~~iaaal~lG--A~gV~~GTrFl~t~Es 228 (330)
T PF03060_consen 164 GPEAGGHRGFEVGSTFSLLPQVRDAVD-------------IPVIAAGGIADGRGIAAALALG--ADGVQMGTRFLATEES 228 (330)
T ss_dssp -TTSSEE---SSG-HHHHHHHHHHH-S-------------S-EEEESS--SHHHHHHHHHCT---SEEEESHHHHTSTTS
T ss_pred ccccCCCCCccccceeeHHHHHhhhcC-------------CcEEEecCcCCHHHHHHHHHcC--CCEeecCCeEEecccc
Confidence 444445555 44556666655555443 689999998 888899999988 4677899999987654
Q ss_pred Cc
Q 024420 97 AA 98 (268)
Q Consensus 97 p~ 98 (268)
+.
T Consensus 229 ~~ 230 (330)
T PF03060_consen 229 GA 230 (330)
T ss_dssp -S
T ss_pred cC
Confidence 43
No 231
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=23.33 E-value=3.2e+02 Score=24.87 Aligned_cols=70 Identities=20% Similarity=0.275 Sum_probs=44.8
Q ss_pred HHHHHHHHhhcCCCccEEeeC-CCCh--HHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCC-CHHHHHHHhhcCCcccE
Q 024420 8 FCAVALALNDLGYKAVGIRLD-SGDL--AYLSCEARKFFRTIEKEFGVPDFEKMSITASNDL-NEETLDALNKQGHEVDA 83 (268)
Q Consensus 8 ai~Va~~L~~~G~~l~GVRlD-SGDl--~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~L-de~~I~~l~~~g~~id~ 83 (268)
+.+-|++.+.+| +.-|=+| ||.. ..+.+++++.+ .++.|++.||+ +.+.++++.+.| .|.
T Consensus 137 ~~ayA~aae~~g--~~ivyLe~SG~~~~~e~I~~v~~~~------------~~~pl~vGGGIrs~e~a~~l~~aG--AD~ 200 (219)
T cd02812 137 AAAYALAAEYLG--MPIVYLEYSGAYGPPEVVRAVKKVL------------GDTPLIVGGGIRSGEQAKEMAEAG--ADT 200 (219)
T ss_pred HHHHHHHHHHcC--CeEEEeCCCCCcCCHHHHHHHHHhc------------CCCCEEEeCCCCCHHHHHHHHHcC--CCE
Confidence 344455455566 4446667 5543 22333333322 25689999999 888999998877 477
Q ss_pred EeecCccccc
Q 024420 84 FGIGTYLVTC 93 (268)
Q Consensus 84 fGVGT~Lvt~ 93 (268)
.-|||.+.+.
T Consensus 201 VVVGsai~~~ 210 (219)
T cd02812 201 IVVGNIVEED 210 (219)
T ss_pred EEECchhhCC
Confidence 8899998874
No 232
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=23.29 E-value=4.3e+02 Score=26.76 Aligned_cols=60 Identities=15% Similarity=0.172 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHHHHHhHhhCCCCCC-CeEEEEeCCC-CHHHHHHHhhcCCcccEEeecCcccccCCC
Q 024420 32 LAYLSCEARKFFRTIEKEFGVPDFE-KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTCYAQ 96 (268)
Q Consensus 32 l~~ls~~~R~~ld~~~~~l~~~G~~-~vkIi~S~~L-de~~I~~l~~~g~~id~fGVGT~Lvt~~~~ 96 (268)
+..|.-.++++-|+....+ ++. .+.|++.||| |...+......|+ |+.=+||.+..|...
T Consensus 201 ~~~Llp~i~~lrd~v~~~~---~y~~~VpViAAGGI~t~~~vaAAlaLGA--dgV~~GT~flat~Es 262 (444)
T TIGR02814 201 LVVLLPAIIRLRDTLMRRY---GYRKPIRVGAAGGIGTPEAAAAAFMLGA--DFIVTGSVNQCTVEA 262 (444)
T ss_pred HHHHHHHHHHHHHHHhhcc---cCCCCceEEEeCCCCCHHHHHHHHHcCC--cEEEeccHHHhCccc
Confidence 4455555554444432222 233 4789999999 9999999999985 466689999876653
No 233
>PRK01215 competence damage-inducible protein A; Provisional
Probab=23.27 E-value=2.4e+02 Score=26.23 Aligned_cols=51 Identities=20% Similarity=0.247 Sum_probs=33.2
Q ss_pred HHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCH
Q 024420 7 NFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNE 68 (268)
Q Consensus 7 nai~Va~~L~~~G~~l~GVRlDSGDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde 68 (268)
|+-.++..|.+.|+++..+-+=.-|...+...+++.++. .+ -|+.|||+-.
T Consensus 24 n~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~a~~~----------~D-lVIttGG~g~ 74 (264)
T PRK01215 24 NASWIARRLTYLGYTVRRITVVMDDIEEIVSAFREAIDR----------AD-VVVSTGGLGP 74 (264)
T ss_pred hHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHhcC----------CC-EEEEeCCCcC
Confidence 566778888888888766655555666665555555543 24 6777787643
No 234
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=23.24 E-value=2.5e+02 Score=29.78 Aligned_cols=35 Identities=9% Similarity=0.214 Sum_probs=22.8
Q ss_pred eEEEEeCCC-CHHHHHHHhhcCCcccEEeecCccccc
Q 024420 58 MSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTC 93 (268)
Q Consensus 58 vkIi~S~~L-de~~I~~l~~~g~~id~fGVGT~Lvt~ 93 (268)
+.|+++|++ +.+.+++++++|. .|..++|..++..
T Consensus 688 ~pv~~~G~i~~~~~a~~~l~~g~-~D~v~~gR~~l~d 723 (765)
T PRK08255 688 IATIAVGAISEADHVNSIIAAGR-ADLCALARPHLAD 723 (765)
T ss_pred CEEEEeCCCCCHHHHHHHHHcCC-cceeeEcHHHHhC
Confidence 467777777 5666777766553 6677777776653
No 235
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=22.74 E-value=4.5e+02 Score=25.15 Aligned_cols=35 Identities=11% Similarity=0.233 Sum_probs=28.2
Q ss_pred eEEE--EeCCC-CHHHHHHHhhcCCcccEEeecCcccccC
Q 024420 58 MSIT--ASNDL-NEETLDALNKQGHEVDAFGIGTYLVTCY 94 (268)
Q Consensus 58 vkIi--~S~~L-de~~I~~l~~~g~~id~fGVGT~Lvt~~ 94 (268)
+.|+ +.||+ +++.+..+.+.| .+++-||+.+..+.
T Consensus 195 iPVV~iAeGGI~Tpena~~v~e~G--AdgVaVGSAI~~a~ 232 (283)
T cd04727 195 LPVVNFAAGGVATPADAALMMQLG--ADGVFVGSGIFKSE 232 (283)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHcC--CCEEEEcHHhhcCC
Confidence 4565 99999 999999999877 67888999997653
No 236
>PRK12376 putative translaldolase; Provisional
Probab=22.70 E-value=2e+02 Score=26.48 Aligned_cols=46 Identities=17% Similarity=0.200 Sum_probs=38.3
Q ss_pred ee-CCC-ChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcCCc
Q 024420 26 RL-DSG-DLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHE 80 (268)
Q Consensus 26 Rl-DSG-Dl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g~~ 80 (268)
|+ |+| |...+.++++++++. . .+++|++..==+.+.+.+....|+.
T Consensus 147 R~dd~g~D~~~~i~~i~~i~~~--------~-~~tkILaASiR~~~~v~~a~~~Gad 194 (236)
T PRK12376 147 RIADTGVDPVPLMKEALAICHS--------K-PGVELLWASPREVYNIIQADQLGCD 194 (236)
T ss_pred hhhhcCCCcHHHHHHHHHHHHh--------C-CCcEEEEEecCCHHHHHHHHHcCCC
Confidence 77 765 888999999999986 2 5789999999999999999887654
No 237
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.
Probab=22.68 E-value=2.8e+02 Score=21.12 Aligned_cols=35 Identities=26% Similarity=0.359 Sum_probs=26.3
Q ss_pred CCCCeEEEEeCCCCH-------HHHHHHhhcCCcccEEeecC
Q 024420 54 DFEKMSITASNDLNE-------ETLDALNKQGHEVDAFGIGT 88 (268)
Q Consensus 54 G~~~vkIi~S~~Lde-------~~I~~l~~~g~~id~fGVGT 88 (268)
+-..+-|++||+.+. ..+..+.+.+..+..+|+|+
T Consensus 100 ~~~~~lvvitDg~~~~~~~~~~~~~~~~~~~~v~v~~v~~g~ 141 (161)
T cd00198 100 NARRVIILLTDGEPNDGPELLAEAARELRKLGITVYTIGIGD 141 (161)
T ss_pred CCceEEEEEeCCCCCCCcchhHHHHHHHHHcCCEEEEEEcCC
Confidence 446678899998875 34555666788899999998
No 238
>PLN02549 asparagine synthase (glutamine-hydrolyzing)
Probab=22.65 E-value=2.1e+02 Score=29.69 Aligned_cols=54 Identities=15% Similarity=0.239 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHH-hHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcC-----------CcccEEeecCc
Q 024420 34 YLSCEARKFFRTI-EKEFGVPDFEKMSITASNDLNEETLDALNKQG-----------HEVDAFGIGTY 89 (268)
Q Consensus 34 ~ls~~~R~~ld~~-~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g-----------~~id~fGVGT~ 89 (268)
+....+|+.|+++ ..++..+ ..+-+++|||||=-.|..+...- .++..|-||..
T Consensus 205 ~~~~~lr~~L~~aV~~rl~sd--vpvgv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~l~tfsig~~ 270 (578)
T PLN02549 205 YDPLVLREAFEKAVIKRLMTD--VPFGVLLSGGLDSSLVASIAARHLAETKAARQWGQQLHSFCVGLE 270 (578)
T ss_pred hHHHHHHHHHHHHHHHHhccC--CceeEeecCCccHHHHHHHHHHhhhhcccccccCCCceEEecCCC
Confidence 4456788998888 6666432 34789999999999999886431 25667777753
No 239
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=22.56 E-value=2.1e+02 Score=23.33 Aligned_cols=39 Identities=18% Similarity=0.171 Sum_probs=22.8
Q ss_pred HHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHH
Q 024420 7 NFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRT 45 (268)
Q Consensus 7 nai~Va~~L~~~G~~l~GVRlDSGDl~~ls~~~R~~ld~ 45 (268)
|+..++..|++.|+++....+=.-|+..+...+++.+++
T Consensus 18 n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~ 56 (144)
T PF00994_consen 18 NGPFLAALLEELGIEVIRYGIVPDDPDAIKEALRRALDR 56 (144)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEEESSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCeeeEEEEECCCHHHHHHHHHhhhcc
Confidence 556666777777766543333233666666666666555
No 240
>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
Probab=22.51 E-value=3.3e+02 Score=26.27 Aligned_cols=79 Identities=16% Similarity=0.194 Sum_probs=48.0
Q ss_pred ccEEeeCCCC--hHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHH-Hhhc----------CCcccEEeecC
Q 024420 22 AVGIRLDSGD--LAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDA-LNKQ----------GHEVDAFGIGT 88 (268)
Q Consensus 22 l~GVRlDSGD--l~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~-l~~~----------g~~id~fGVGT 88 (268)
+.=|++++.. ..+|..++++.| |++++-|+-+++.|+..+.+ +-.. ...+.+.|+|+
T Consensus 55 iV~I~i~~~~~~~~~Le~~L~~~f----------gL~~a~VVp~~~~~~~~~~~~lg~aaA~~l~~~l~~gdvigV~wGr 124 (321)
T COG2390 55 IVKISINSPVEGCLELEQQLKERF----------GLKEAIVVPSDSDADDSILRRLGRAAAQYLESLLKPGDVIGVGWGR 124 (321)
T ss_pred eEEEEeCCCCcchHHHHHHHHHhc----------CCCeEEEEcCCCCCchHHHHHHHHHHHHHHHHhCCCCCEEEEeccH
Confidence 5678888653 234455555555 88998888888788666665 3321 12477888999
Q ss_pred cccccCC-CCccc-eEEEEeEECC
Q 024420 89 YLVTCYA-QAALG-CVFKLVEINK 110 (268)
Q Consensus 89 ~Lvt~~~-~p~l~-~vyKLve~~g 110 (268)
.+....+ .|+.. -=.++|..-|
T Consensus 125 Tv~a~~~~l~~~~~~~~~vV~l~G 148 (321)
T COG2390 125 TLSAVVDNLPPAPLRDVKVVQLTG 148 (321)
T ss_pred HHHHHHHhcCcCccCCeEEEECCC
Confidence 8876433 22222 1145666544
No 241
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=22.45 E-value=4.6e+02 Score=22.48 Aligned_cols=64 Identities=17% Similarity=0.111 Sum_probs=36.8
Q ss_pred HHHHhhcCCCccEEeeCC-CChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCC--CCHHHHHHHhhcCCcccEEee
Q 024420 12 ALALNDLGYKAVGIRLDS-GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASND--LNEETLDALNKQGHEVDAFGI 86 (268)
Q Consensus 12 a~~L~~~G~~l~GVRlDS-GDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~--Lde~~I~~l~~~g~~id~fGV 86 (268)
..++++.|+.+.- .+| +|+......++.++.. ++ +.-|+.+.+ .....+.++.+.|.|+..++.
T Consensus 22 ~~~~~~~g~~~~~--~~~~~~~~~~~~~l~~~~~~--------~v-dgii~~~~~~~~~~~~i~~~~~~~ipvV~~~~ 88 (273)
T cd06305 22 KAEAEALGGDLRV--YDAGGDDAKQADQIDQAIAQ--------KV-DAIIIQHGRAEVLKPWVKRALDAGIPVVAFDV 88 (273)
T ss_pred HHHHHHcCCEEEE--ECCCCCHHHHHHHHHHHHHc--------CC-CEEEEecCChhhhHHHHHHHHHcCCCEEEecC
Confidence 4456677887643 345 5766555555555543 33 434554433 234557778888878766643
No 242
>cd00887 MoeA MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.
Probab=22.27 E-value=4.7e+02 Score=25.45 Aligned_cols=92 Identities=17% Similarity=0.197 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCC---HHHHHH-HhhcCCcc
Q 024420 6 PNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN---EETLDA-LNKQGHEV 81 (268)
Q Consensus 6 ~nai~Va~~L~~~G~~l~GVRlDSGDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Ld---e~~I~~-l~~~g~~i 81 (268)
.|...++..|++.|+....+.+=.-|...+...+++.+++ .+ -|+.|||.. .+-+.+ +.+.|..+
T Consensus 195 sn~~~l~~~l~~~G~~~~~~~~v~Dd~~~i~~~l~~a~~~----------~D-liittGG~s~g~~D~~~~al~~~g~~~ 263 (394)
T cd00887 195 SNSYMLAALLRELGAEVVDLGIVPDDPEALREALEEALEE----------AD-VVITSGGVSVGDYDFVKEVLEELGGEV 263 (394)
T ss_pred ChHHHHHHHHHHCCCEEEEeceeCCCHHHHHHHHHHHhhC----------CC-EEEEeCCCCCCcchhHHHHHHhCCCeE
Confidence 3566677778888988777666666777776666666544 44 677788875 233333 33456777
Q ss_pred cEEeecCcccccCCCCccceEEEEeEECCccccccC
Q 024420 82 DAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLS 117 (268)
Q Consensus 82 d~fGVGT~Lvt~~~~p~l~~vyKLve~~g~P~~K~S 117 (268)
..+||.-+ .+.|.+- ..++++|++=++
T Consensus 264 ~f~gv~~k----PG~p~~~-----g~~~~~~v~~LP 290 (394)
T cd00887 264 LFHGVAMK----PGKPLAF-----GRLGGKPVFGLP 290 (394)
T ss_pred EEEEEEEe----cCCCEEE-----EEECCEEEEECC
Confidence 78887522 3344321 223566666665
No 243
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=21.76 E-value=2.5e+02 Score=27.13 Aligned_cols=36 Identities=11% Similarity=0.206 Sum_probs=26.4
Q ss_pred CeEEEEeCCC-CHHHHHHHhhcCCcccEEeecCccccc
Q 024420 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTC 93 (268)
Q Consensus 57 ~vkIi~S~~L-de~~I~~l~~~g~~id~fGVGT~Lvt~ 93 (268)
++.|+++|++ +.+.++++++.|. .|..++|..++..
T Consensus 289 ~~pvi~~G~i~~~~~~~~~l~~g~-~D~V~~gR~~lad 325 (370)
T cd02929 289 SKPVVGVGRFTSPDKMVEVVKSGI-LDLIGAARPSIAD 325 (370)
T ss_pred CCCEEEeCCCCCHHHHHHHHHcCC-CCeeeechHhhhC
Confidence 4567888887 5777888877654 6788888888764
No 244
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=21.70 E-value=1.8e+02 Score=22.92 Aligned_cols=37 Identities=22% Similarity=0.304 Sum_probs=24.6
Q ss_pred CCCeEEEEeCCCCH----HHHHHHhhcCCcccEEeecCccc
Q 024420 55 FEKMSITASNDLNE----ETLDALNKQGHEVDAFGIGTYLV 91 (268)
Q Consensus 55 ~~~vkIi~S~~Lde----~~I~~l~~~g~~id~fGVGT~Lv 91 (268)
-...-|++|||-+. +.+..+.++|..+..+|+|+.-.
T Consensus 99 ~~~~iv~iTDG~~~~~~~~~~~~~~~~~i~i~~v~~~~~~~ 139 (172)
T PF13519_consen 99 RRRAIVLITDGEDNSSDIEAAKALKQQGITIYTVGIGSDSD 139 (172)
T ss_dssp EEEEEEEEES-TTHCHHHHHHHHHHCTTEEEEEEEES-TT-
T ss_pred CceEEEEecCCCCCcchhHHHHHHHHcCCeEEEEEECCCcc
Confidence 44577999999875 34556666777888888887664
No 245
>PRK05465 ethanolamine ammonia-lyase small subunit; Provisional
Probab=21.64 E-value=1.1e+02 Score=28.91 Aligned_cols=61 Identities=20% Similarity=0.279 Sum_probs=36.8
Q ss_pred EeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHh-------hcCCcccEEeecCcccc
Q 024420 25 IRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALN-------KQGHEVDAFGIGTYLVT 92 (268)
Q Consensus 25 VRlDSGDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~-------~~g~~id~fGVGT~Lvt 92 (268)
-|+|.|- .|+.+.+..|.+. . +.-.++.|++||||+-..|..=. .++....+|-+|+-++-
T Consensus 86 ~RPDLGR--~L~~~s~~~L~~~---~--~~~~Dv~iViaDGLSa~Av~~na~~~l~al~~~L~~~g~~iap~v~~ 153 (260)
T PRK05465 86 TRPDLGR--RLSDESREALKAQ---C--GKNPDVQIVVADGLSALAVEANAEPLLPALLAGLKAAGWSVGPPVFV 153 (260)
T ss_pred cCCCCCC--CCCHHHHHHHHHh---c--CCCCcEEEEEcCCCCHHHHHHhHHHHHHHHHHHHHHcCCCcCCeEEE
Confidence 4778885 3455566666652 0 12358999999999988876422 12223344666665544
No 246
>COG1059 Thermostable 8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair]
Probab=21.49 E-value=86 Score=28.60 Aligned_cols=57 Identities=30% Similarity=0.422 Sum_probs=39.1
Q ss_pred HHHHHHhhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHhhcCCcccEEeecC
Q 024420 10 AVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGT 88 (268)
Q Consensus 10 ~Va~~L~~~G~~l~GVRlDSGDl~~ls~~~R~~ld~~~~~l~~~G~~~vkIi~S~~Lde~~I~~l~~~g~~id~fGVGT 88 (268)
++...|+..||++..+| +....++|+.+++. ++++..+=++...++++-. ...|+|-
T Consensus 75 EL~e~Lk~~g~Rf~n~r------aeyIVeaR~~~~~l------------k~~v~~~~~~~vaRE~Lv~----nikGiGy 131 (210)
T COG1059 75 ELREKLKEVGYRFYNVR------AEYIVEAREKFDDL------------KIIVKADENEKVARELLVE----NIKGIGY 131 (210)
T ss_pred HHHHHHHHhcchhcccc------hHHHHHHHHHHHHH------------HHHHhcCcchHHHHHHHHH----HcccccH
Confidence 46667778889988887 44566777777654 5555666677778888742 4666664
No 247
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=20.89 E-value=3.4e+02 Score=22.28 Aligned_cols=34 Identities=18% Similarity=0.347 Sum_probs=23.5
Q ss_pred CCeEEEEeCCCC------HHHHHH-HhhcCCcccEEeecCc
Q 024420 56 EKMSITASNDLN------EETLDA-LNKQGHEVDAFGIGTY 89 (268)
Q Consensus 56 ~~vkIi~S~~Ld------e~~I~~-l~~~g~~id~fGVGT~ 89 (268)
.++-|++||+.+ ...+.+ +.+.|.++.++|+|+.
T Consensus 103 ~~~iiliTDG~~~~g~~~~~~~~~~~~~~gi~i~~i~ig~~ 143 (180)
T cd01467 103 ERVIVLLTDGENNAGEIDPATAAELAKNKGVRIYTIGVGKS 143 (180)
T ss_pred CCEEEEEeCCCCCCCCCCHHHHHHHHHHCCCEEEEEEecCC
Confidence 467889998863 223333 3457889999999974
No 248
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=20.80 E-value=3.6e+02 Score=25.48 Aligned_cols=34 Identities=21% Similarity=0.220 Sum_probs=17.4
Q ss_pred eEEEEeCCC-CHHHHHHHhhcCCcccEEeecCcccc
Q 024420 58 MSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVT 92 (268)
Q Consensus 58 vkIi~S~~L-de~~I~~l~~~g~~id~fGVGT~Lvt 92 (268)
+.|+++||+ +.+.+.++.+.. -.|+..||+.+..
T Consensus 195 iPVI~nGgI~s~~da~~~l~~~-gadgVmiGR~~l~ 229 (321)
T PRK10415 195 IPVIANGDITDPLKARAVLDYT-GADALMIGRAAQG 229 (321)
T ss_pred CcEEEeCCCCCHHHHHHHHhcc-CCCEEEEChHhhc
Confidence 455666665 555555555421 1455555555543
No 249
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=20.78 E-value=3.7e+02 Score=26.66 Aligned_cols=67 Identities=16% Similarity=0.284 Sum_probs=47.7
Q ss_pred CccEEeeCCCChHHHH-HHHHHHHHHHhHhhCCCCCCCeEEEEe---CCCCHHHHHHHhhcCCcccEEeecCc
Q 024420 21 KAVGIRLDSGDLAYLS-CEARKFFRTIEKEFGVPDFEKMSITAS---NDLNEETLDALNKQGHEVDAFGIGTY 89 (268)
Q Consensus 21 ~l~GVRlDSGDl~~ls-~~~R~~ld~~~~~l~~~G~~~vkIi~S---~~Lde~~I~~l~~~g~~id~fGVGT~ 89 (268)
.+.-|=+--|.+..|+ .++.++++.....+.+.. ++.|-+. +.+|++.++.+.+.|....++||=|.
T Consensus 114 ~i~~iy~GGGTPs~L~~~~l~~ll~~i~~~~~l~~--~~eitiE~~p~~~t~e~l~~l~~aGvnRiSiGVQSf 184 (449)
T PRK09058 114 PIHAVYFGGGTPTALSAEDLARLITALREYLPLAP--DCEITLEGRINGFDDEKADAALDAGANRFSIGVQSF 184 (449)
T ss_pred eeeEEEECCCccccCCHHHHHHHHHHHHHhCCCCC--CCEEEEEeCcCcCCHHHHHHHHHcCCCEEEecCCcC
Confidence 3556666678877664 446777777666665542 2344444 77999999999999998889999773
No 250
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=20.69 E-value=4.6e+02 Score=25.90 Aligned_cols=71 Identities=21% Similarity=0.405 Sum_probs=47.9
Q ss_pred CCCccEEeeCCCChHHH-HHHHHHHHHHHhHhhCCCCCCCeEEEEe-CCCCHHHHHHHhhcCCcccEEeecCc
Q 024420 19 GYKAVGIRLDSGDLAYL-SCEARKFFRTIEKEFGVPDFEKMSITAS-NDLNEETLDALNKQGHEVDAFGIGTY 89 (268)
Q Consensus 19 G~~l~GVRlDSGDl~~l-s~~~R~~ld~~~~~l~~~G~~~vkIi~S-~~Lde~~I~~l~~~g~~id~fGVGT~ 89 (268)
+..+..|-+--|.+..+ ..++.++++.+...+++..-..+.|-+. +.++++.+..|.+.|....++||=|.
T Consensus 100 ~~~v~~i~~gGGtPs~l~~~~l~~ll~~l~~~~~~~~~~e~tie~np~~lt~e~l~~l~~aG~~risiGvqS~ 172 (453)
T PRK09249 100 GRPVSQLHWGGGTPTFLSPEQLRRLMALLREHFNFAPDAEISIEIDPRELDLEMLDALRELGFNRLSLGVQDF 172 (453)
T ss_pred CCceEEEEECCcccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEecCCcCCHHHHHHHHHcCCCEEEECCCCC
Confidence 34566777777887665 4557777777765565432234454443 35899999999999987777777554
No 251
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=20.40 E-value=5.8e+02 Score=23.03 Aligned_cols=31 Identities=13% Similarity=0.146 Sum_probs=19.0
Q ss_pred CeEEEEeCCCCHHHHHHHhh-cCCcccEEeec
Q 024420 57 KMSITASNDLNEETLDALNK-QGHEVDAFGIG 87 (268)
Q Consensus 57 ~vkIi~S~~Lde~~I~~l~~-~g~~id~fGVG 87 (268)
+.-|++....++..+..+.+ .|.|+..|+-+
T Consensus 117 dgiii~~~~~~~~~~~~l~~~~~iPvV~~d~~ 148 (341)
T PRK10703 117 DGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWG 148 (341)
T ss_pred CEEEEecCCCCHHHHHHHHhcCCCCEEEEecc
Confidence 43455555566666777766 67777776643
No 252
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=20.22 E-value=79 Score=30.14 Aligned_cols=36 Identities=22% Similarity=0.268 Sum_probs=31.1
Q ss_pred CCeEEEEeCCC-CHHHHHHHhhcCCcccEEeecCccccc
Q 024420 56 EKMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTC 93 (268)
Q Consensus 56 ~~vkIi~S~~L-de~~I~~l~~~g~~id~fGVGT~Lvt~ 93 (268)
.++.|++|||+ +...+...+..| .|..|+|+.+...
T Consensus 253 ~~ipVIasGGI~~~~di~kaLalG--Ad~V~igr~~L~~ 289 (333)
T TIGR02151 253 PDAPIIASGGLRTGLDVAKAIALG--ADAVGMARPFLKA 289 (333)
T ss_pred CCCeEEEECCCCCHHHHHHHHHhC--CCeehhhHHHHHH
Confidence 35789999999 899999999888 7899999998763
Done!