Query 024422
Match_columns 268
No_of_seqs 238 out of 1260
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 04:28:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024422.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024422hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00098 light-harvesting comp 100.0 1.8E-73 4E-78 519.9 21.4 217 52-268 51-267 (267)
2 PLN00101 Photosystem I light-h 100.0 6.2E-71 1.3E-75 499.2 19.3 205 56-266 46-250 (250)
3 PLN00097 photosystem I light h 100.0 4.5E-70 9.8E-75 491.8 19.4 206 55-262 36-243 (244)
4 PLN00048 photosystem I light h 100.0 7.1E-68 1.5E-72 482.7 16.0 220 47-268 26-262 (262)
5 PLN00147 light-harvesting comp 100.0 3.3E-66 7.1E-71 469.2 19.0 210 57-267 39-251 (252)
6 PLN00187 photosystem II light- 100.0 1.3E-65 2.8E-70 471.5 17.7 187 56-266 45-285 (286)
7 PLN00025 photosystem II light 100.0 6.4E-64 1.4E-68 456.1 18.0 196 54-265 42-255 (262)
8 PLN00171 photosystem light-ha 100.0 1.5E-62 3.3E-67 456.2 17.0 205 53-266 98-323 (324)
9 PLN00100 light-harvesting comp 100.0 2.8E-61 6E-66 434.5 16.0 179 59-265 31-209 (246)
10 PLN00099 light-harvesting comp 100.0 1.7E-60 3.8E-65 430.1 17.7 188 61-267 42-238 (243)
11 PLN00170 photosystem II light- 100.0 1.6E-56 3.4E-61 405.8 15.7 191 53-250 41-254 (255)
12 PF00504 Chloroa_b-bind: Chlor 100.0 5E-43 1.1E-47 296.4 13.5 151 72-239 1-156 (156)
13 PLN00089 fucoxanthin-chlorophy 100.0 4.4E-43 9.6E-48 311.3 13.5 163 67-247 41-208 (209)
14 PLN00120 fucoxanthin-chlorophy 100.0 7.2E-36 1.6E-40 264.0 12.1 143 86-246 47-198 (202)
15 PLN00098 light-harvesting comp 99.6 5.3E-16 1.2E-20 142.5 5.9 57 191-248 76-132 (267)
16 PLN00101 Photosystem I light-h 99.6 9.5E-16 2.1E-20 139.6 5.8 55 191-246 67-121 (250)
17 PLN00170 photosystem II light- 99.6 3.2E-15 6.9E-20 136.4 6.6 76 163-246 50-125 (255)
18 PLN00147 light-harvesting comp 99.5 3.6E-15 7.7E-20 136.1 4.4 60 73-132 172-231 (252)
19 PLN00048 photosystem I light h 99.5 7E-15 1.5E-19 134.9 4.1 55 77-131 186-240 (262)
20 PLN00089 fucoxanthin-chlorophy 99.5 1.7E-14 3.7E-19 128.6 4.8 54 78-131 153-207 (209)
21 PLN00171 photosystem light-ha 99.5 2.7E-14 5.9E-19 133.8 5.3 54 191-245 124-177 (324)
22 PLN00097 photosystem I light h 99.5 3.8E-14 8.2E-19 128.7 5.6 54 191-245 58-111 (244)
23 PLN00187 photosystem II light- 99.5 3.3E-14 7E-19 131.7 3.4 56 77-132 211-266 (286)
24 PLN00025 photosystem II light 99.4 3.7E-14 8E-19 130.0 3.6 56 76-132 182-237 (262)
25 PLN00100 light-harvesting comp 99.4 7.1E-14 1.5E-18 127.0 5.2 51 190-241 48-98 (246)
26 PLN00099 light-harvesting comp 99.4 2.3E-13 5E-18 123.7 4.8 51 191-242 58-108 (243)
27 PF00504 Chloroa_b-bind: Chlor 99.3 1E-12 2.2E-17 111.3 3.0 50 75-124 107-156 (156)
28 PLN00120 fucoxanthin-chlorophy 99.1 5.1E-11 1.1E-15 105.9 3.7 46 78-127 142-194 (202)
29 PHA02337 putative high light i 98.3 8E-07 1.7E-11 58.0 3.0 28 218-245 4-31 (35)
30 PLN00084 photosystem II subuni 98.1 1.9E-06 4E-11 74.8 3.4 46 212-257 131-177 (214)
31 PLN00014 light-harvesting-like 97.7 3.1E-05 6.7E-10 70.1 3.2 35 217-251 160-194 (250)
32 PHA02337 putative high light i 97.5 6.7E-05 1.5E-09 49.0 1.9 29 102-130 3-31 (35)
33 PLN00014 light-harvesting-like 96.4 0.001 2.3E-08 60.3 0.8 32 101-132 159-190 (250)
34 PLN00084 photosystem II subuni 95.9 0.0075 1.6E-07 52.7 3.5 39 95-133 129-168 (214)
35 PLN02449 ferrochelatase 56.7 7.8 0.00017 39.2 2.3 21 226-246 463-483 (485)
36 KOG0593 Predicted protein kina 42.5 19 0.0004 35.0 2.3 51 82-133 143-204 (396)
37 KOG0659 Cdk activating kinase 24.3 48 0.001 31.6 1.8 38 97-135 163-206 (318)
38 PHA00649 hypothetical protein 22.7 1.5E+02 0.0033 22.5 3.9 35 203-238 26-67 (83)
39 PHA00003 B internal scaffoldin 22.2 1.2E+02 0.0027 24.9 3.5 35 191-229 41-75 (120)
40 KOG0742 AAA+-type ATPase [Post 20.2 94 0.002 31.6 3.0 8 84-91 71-78 (630)
No 1
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=100.00 E-value=1.8e-73 Score=519.89 Aligned_cols=217 Identities=68% Similarity=1.300 Sum_probs=201.5
Q ss_pred cccccccCCCCCCCCCCCCCCCCCCCCCCCCCcCccccCCCCCHHHHHHhhhhhhhccchhhhhhhhhhhhhhhhccCCC
Q 024422 52 VSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGIL 131 (268)
Q Consensus 52 ~~~~~~~~~~~r~~~~p~~~~P~~l~G~~pGd~GfDPlGL~~d~~~~~~~r~aEl~HGR~AMla~~G~~~~e~~~~~G~l 131 (268)
++.++.+|+++|++|||+.++|+||||++|||||||||||++|+++++|||++|||||||||||++|+++||++++.|++
T Consensus 51 ~~~~~~~~~~~r~~w~Pg~~~P~~LdG~~pGD~GFDPlgl~~~~~~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g~~ 130 (267)
T PLN00098 51 VSSVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLGFI 130 (267)
T ss_pred cccccccCCCCccccCCCCCCCccCCCCCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCcc
Confidence 44566779999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred CCCcccccCccccccchhhHHHHHHHHHHHHHhhhhhcccCCcccCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCChH
Q 024422 132 NTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPE 211 (268)
Q Consensus 132 ~~~~w~~aG~~~~~~~~~~l~~~qi~l~g~~E~~r~~~~~~~G~~~~~~~f~~~~~~~~d~~yPGd~gFDPLgl~~~d~e 211 (268)
..+.|+++|..+|+.++.+++++|+++||++|.+||+++.++|+++.++.+++...+..|.+||||++||||||.++|+|
T Consensus 131 ~~~~w~~Ag~~~~~~~~~~l~~~q~~lmG~~E~~R~~~~~~~g~~~~~~~~~~~~~~~~d~~yPGg~~FDPlgl~~~d~~ 210 (267)
T PLN00098 131 ENFSWYDAGAREYFADPTTLFVVQMVLMGWAEGRRWADLIKPGCVDIEPKLPNKTNPKPDVGYPGGLWFDPMMWGRGSPE 210 (267)
T ss_pred cccccccccchhhccCchHHHHHHHHHHHHHHHHHhhcccCCccccccccccccccCCCCCCCCCCccCCcccCCCCCHH
Confidence 87889999988888888889999999999999999999999999888887765554445678999999999999877999
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHhhhhcCCCchhHHHHhhcCCccccccccccCC
Q 024422 212 KVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFTPK 268 (268)
Q Consensus 212 ~~~~~k~kELkNGRLAMlAi~G~~~Q~~vTG~gPl~nL~~hladP~~~n~~~~~~~~ 268 (268)
+++++|++|||||||||+||+||++|+.+||++|++||.+||+||+||||++++++|
T Consensus 211 ~~~~~k~kEikNGRLAM~A~~G~~~q~~vTG~gPl~nL~~hladP~~~n~~~~~~~~ 267 (267)
T PLN00098 211 PVMVLRTKEIKNGRLAMLAFVGFCFQAVYTGEGPIENLMAHLADPGHCNVFSAFTSH 267 (267)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCChHHHHHHHhcCcccccchhhccCC
Confidence 999999999999999999999999999999999999999999999999999999875
No 2
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=100.00 E-value=6.2e-71 Score=499.23 Aligned_cols=205 Identities=51% Similarity=1.030 Sum_probs=189.6
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCcCccccCCCCCHHHHHHhhhhhhhccchhhhhhhhhhhhhhhhccCCCCCCc
Q 024422 56 AAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPS 135 (268)
Q Consensus 56 ~~~~~~~r~~~~p~~~~P~~l~G~~pGd~GfDPlGL~~d~~~~~~~r~aEl~HGR~AMla~~G~~~~e~~~~~G~l~~~~ 135 (268)
+.++.++|++|||+.++|+||||++||||||||+||++|+++++|+|++||+||||||||++|+++||++++.|++..+.
T Consensus 46 ~~~~~~~r~~W~P~~~~P~~LdG~~PGD~GFDPlGl~~d~~~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~~g~~~~p~ 125 (250)
T PLN00101 46 SFKVEAKKGEWLPGLASPGYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQ 125 (250)
T ss_pred cccccccccccCCCCCCCcccCCCCCCccCCCccccCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCCCcCCCc
Confidence 45667899999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred ccccCccccccchhhHHHHHHHHHHHHHhhhhhcccCCcccCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCChHHHHH
Q 024422 136 WYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKE 215 (268)
Q Consensus 136 w~~aG~~~~~~~~~~l~~~qi~l~g~~E~~r~~~~~~~G~~~~~~~f~~~~~~~~d~~yPGd~gFDPLgl~~~d~e~~~~ 215 (268)
|+++|...|+....+++++|+++||++|.+||+++.+||+++.++.|........|.+||||. ||||||++ + ++
T Consensus 126 w~~ag~~~~~~~~~~l~~ie~~~mg~~E~~R~~~~~~pG~~~~~~~~~~~~~~~gd~~YPGG~-FDPLgl~~-~----~~ 199 (250)
T PLN00101 126 WYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNPLNFAP-T----EE 199 (250)
T ss_pred cccccchhhcccchHHHHHHHHHHHHHHHHHhhcccCCCcccccccccccccCCccccCCCCc-cCccCCCc-c----HH
Confidence 999998888888888999999999999999999999999998888876544455677899998 99999984 4 38
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhhhcCCCchhHHHHhhcCCcccccccccc
Q 024422 216 LRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 266 (268)
Q Consensus 216 ~k~kELkNGRLAMlAi~G~~~Q~~vTG~gPl~nL~~hladP~~~n~~~~~~ 266 (268)
+|+||||||||||+||+||++|+++||+||++||.+||+||+||||++++.
T Consensus 200 ~k~kEIKNGRLAM~A~lGf~~Q~~vTG~gPi~nL~~hladP~~~ni~~~~~ 250 (250)
T PLN00101 200 AKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIVQTLS 250 (250)
T ss_pred HHHHHHhhcchHHHHHhhHhheehccCCChHHHHHHHhcCCcccchhhhcC
Confidence 899999999999999999999999999999999999999999999999873
No 3
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=100.00 E-value=4.5e-70 Score=491.80 Aligned_cols=206 Identities=55% Similarity=1.047 Sum_probs=189.7
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCCcCccccCCCCCHHHHHHhhhhhhhccchhhhhhhhhhhhhhhhccCCCCCC
Q 024422 55 SAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTP 134 (268)
Q Consensus 55 ~~~~~~~~r~~~~p~~~~P~~l~G~~pGd~GfDPlGL~~d~~~~~~~r~aEl~HGR~AMla~~G~~~~e~~~~~G~l~~~ 134 (268)
+++..+++|++|||+.++|+||||++||||||||+||++|+++++|||++||+||||||||++||++||++++.|++..+
T Consensus 36 ~~~~~~~~R~~w~Pg~~~P~~LdG~~pGD~GfDPlGl~~~~~~~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~~~~p 115 (244)
T PLN00097 36 GAVAAAADRPTWLPGKAAAAHLDGSLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGMADLP 115 (244)
T ss_pred eecccCCCCcccCCCCCCccccCCCCCCCCCCCccccCcCHHHHHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCcccCC
Confidence 34456689999999999999999999999999999999999999999999999999999999999999999988886667
Q ss_pred cccccCccc-cccchhhHHHHHHHHHHHHHhhhhhcccCCcccCCCCCCCCCCC-CCCCCCCCCCcccCCCCCCCCChHH
Q 024422 135 SWYTAGELE-YFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKL-TGTDVGYPGGLWFDPLGWGSGSPEK 212 (268)
Q Consensus 135 ~w~~aG~~~-~~~~~~~l~~~qi~l~g~~E~~r~~~~~~~G~~~~~~~f~~~~~-~~~d~~yPGd~gFDPLgl~~~d~e~ 212 (268)
.||++|... |+.+..+++.+|+++|+++|.+||+++.+||++..+++|..++. ...|.+|||+. ||||||. +|+++
T Consensus 116 ~W~~Ag~~~~~~~~~~~l~~i~~~lmg~~E~~r~~~~~~pg~~~~~p~~~~~~~~~~~d~gYPgg~-FDPlgl~-~d~~~ 193 (244)
T PLN00097 116 NWIDAAKWDGYWAGAGPLFFIQMAMFNWAEIRRWQDMKAPGSMNEDPLFGANKGDTNTDVGYPKGL-FDKFGWA-KDEKK 193 (244)
T ss_pred ccccCCcchhccccchhHHHHHHHHHHHHHHHHhhcccCCCccccccccccccCCcccccCCCCCC-CCccccC-CCHHH
Confidence 899999876 77777788999999999999999999999999998888876552 33567899998 9999998 59999
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhhhhcCCCchhHHHHhhcCCcccccc
Q 024422 213 VKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVF 262 (268)
Q Consensus 213 ~~~~k~kELkNGRLAMlAi~G~~~Q~~vTG~gPl~nL~~hladP~~~n~~ 262 (268)
++++|+||||||||||+|++||++|+++||+||++||.+||+||+||||+
T Consensus 194 ~~~lk~kEiknGRLAM~A~~G~~~q~~vTGkGPl~nL~~HladP~~~n~~ 243 (244)
T PLN00097 194 AAELKLKEIANGRLAMLAFLGCCAQAIQTGTGPVDNLFSHLADPGHNGIF 243 (244)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhhhhhccCCCHHHHHHHHhcCccccccC
Confidence 99999999999999999999999999999999999999999999999997
No 4
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=100.00 E-value=7.1e-68 Score=482.66 Aligned_cols=220 Identities=44% Similarity=0.834 Sum_probs=192.0
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCcCccccCCCCCHH------HHHHhhhhhhhccchhhhhhhhhh
Q 024422 47 AGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPE------TLRWNVQSEIVHCRWAMLGAAGIF 120 (268)
Q Consensus 47 ~~~~~~~~~~~~~~~~r~~~~p~~~~P~~l~G~~pGd~GfDPlGL~~d~~------~~~~~r~aEl~HGR~AMla~~G~~ 120 (268)
..+|+..+.+++++++|++|||+.++|+||||++|||||||||||+ |++ +.+|+|++||+||||||||++||+
T Consensus 26 ~~~~~~~~~~~~~~~~r~~w~p~~~~P~yLdG~lPGD~GFDPlGL~-~p~~~~~~~~~~~~r~aEL~hGR~AMLa~~G~l 104 (262)
T PLN00048 26 FVVRAEATPPAKQGADRQLWFASKQSLSYLDGTLPGDFGFDPLGLS-DPEGAGGFIEPQWLAYGEVINGRFAMLGAAGAI 104 (262)
T ss_pred eeEecccCCCCCCCCCCceecCCCCCccccCCCCCCccCCCccccC-CccccccchhHHHHHHHHhhcchHHHHHHhhHH
Confidence 4455555566788899999999999999999999999999999996 444 579999999999999999999999
Q ss_pred hhhhhhccCCCCCC---cccccCc------cccccchhhHHHHHHHHHHHHHhhhhhcccCCcccCCCCCCCCCCC-CC-
Q 024422 121 IPELLTKLGILNTP---SWYTAGE------LEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKL-TG- 189 (268)
Q Consensus 121 ~~e~~~~~G~l~~~---~w~~aG~------~~~~~~~~~l~~~qi~l~g~~E~~r~~~~~~~G~~~~~~~f~~~~~-~~- 189 (268)
+||++++.|++... .|+++|. ..|+..+.+++++|+++||++|.+|++++.+||+++.+.+++.++. .+
T Consensus 105 v~Ell~~~g~~~~~~~~~w~~ag~~~~~~~~~y~~~p~~l~~~~~~lmg~~E~~R~~~~~~pG~~~~~~~~~~~~~~~~~ 184 (262)
T PLN00048 105 APEILGKAGLIPQETALPWFQSGVIPPAGTYDYWADPYTLFVLEMALMGFAEHRRAQDYYKPGSMGKQYFLGLEKGLGGS 184 (262)
T ss_pred HHHHhccCCccccccccccccccccccccccccccchhHHHHHHHHHhhheeeeccccccCCCcccccccccchhccccc
Confidence 99999988876533 4998873 3577777788899999999999999999999999876665543332 22
Q ss_pred CCCCCCCCcccCCCCCCCCChHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhcCCCchhHHHHhhcCCccccccccccCC
Q 024422 190 TDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFTPK 268 (268)
Q Consensus 190 ~d~~yPGd~gFDPLgl~~~d~e~~~~~k~kELkNGRLAMlAi~G~~~Q~~vTG~gPl~nL~~hladP~~~n~~~~~~~~ 268 (268)
.|..||||++||||||. +|+|+++++|++|||||||||+|++||++|+++||+||++||.+||+||+||||++++++|
T Consensus 185 ~d~~yPG~~~fDPlGl~-~~~e~~~~~k~~EiknGRLAM~A~~G~~~q~~~tg~gp~~~L~~hladP~~~ni~~~~~~~ 262 (262)
T PLN00048 185 GNPAYPGGPFFNPLGFG-KDEKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVGPFQNLLDHLADPVNNNVLTNLKFH 262 (262)
T ss_pred cccccccccccCccccc-cchHHHHHHHHHHHhhhHHHHHHhhhHhhhhhhcCCCHHHHHHHHhcCccccccccccccC
Confidence 25679999999999998 4899999999999999999999999999999999999999999999999999999999875
No 5
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=100.00 E-value=3.3e-66 Score=469.22 Aligned_cols=210 Identities=49% Similarity=0.946 Sum_probs=188.4
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCcCccccCCCCCHHHHHHhhhhhhhccchhhhhhhhhhhhhhhhccCCCCCCcc
Q 024422 57 AAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSW 136 (268)
Q Consensus 57 ~~~~~~r~~~~p~~~~P~~l~G~~pGd~GfDPlGL~~d~~~~~~~r~aEl~HGR~AMla~~G~~~~e~~~~~G~l~~~~w 136 (268)
..++++|++|+|+.++|+||||++||||||||+||++|+++++|||++|||||||||||++|+++||+++..|++..+.|
T Consensus 39 ~~~~~~R~~wlP~~~~P~~Ldg~~pGD~GFDPlgl~~d~~~~~~~r~aElkhGR~AMlA~~G~l~~e~~~~~g~~~~p~w 118 (252)
T PLN00147 39 PVVAQERPTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRVTGIRNLPVW 118 (252)
T ss_pred ccCCCCccccCCCCCCCCcCCCCCCCccCCCcccccCCHHHHHHHHHHHhhccHHHHHHHhhhhHHHHhccCCCcCCcch
Confidence 45678999999999999999999999999999999999999999999999999999999999999999998887766789
Q ss_pred cccCcccc-ccchhhHHHHHHHHHHHHHhhhhhcccCCcccCCCCCCCC-CC-CCCCCCCCCCCcccCCCCCCCCChHHH
Q 024422 137 YTAGELEY-FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPN-NK-LTGTDVGYPGGLWFDPLGWGSGSPEKV 213 (268)
Q Consensus 137 ~~aG~~~~-~~~~~~l~~~qi~l~g~~E~~r~~~~~~~G~~~~~~~f~~-~~-~~~~d~~yPGd~gFDPLgl~~~d~e~~ 213 (268)
+++|...+ +.+.++++++|+++||++|..|+.++.+||+...+..|.+ +. ..+.+++||||++||||||. +|++++
T Consensus 119 ~~ag~~~~~~~~~~~~~~~q~~~mG~~E~~R~~~~~~pg~~~~~g~~~g~~~~~~~~~~~yPGd~~FDPlGl~-~d~~~~ 197 (252)
T PLN00147 119 YEAGAVKFEFASTRTLFVVQLLLMGFAETKRYMDFVSPGSQAKEGSFFGLEAALEGLEPGYPGGPLFNPLGLA-KDIENA 197 (252)
T ss_pred hhcccchhccccchHHHHHHHHHHHHHHHHhhccccCCCccccccccccccccccccCCCCcccccCCccccC-CCHHHH
Confidence 99886443 5666888999999999999999999999998765544432 21 23445679999999999998 599999
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhhhhcCCCchhHHHHhhcCCccccccccccC
Q 024422 214 KELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFTP 267 (268)
Q Consensus 214 ~~~k~kELkNGRLAMlAi~G~~~Q~~vTG~gPl~nL~~hladP~~~n~~~~~~~ 267 (268)
+++|+||||||||||+||+||++|+++||+||++||.+||+||+||||++++.+
T Consensus 198 ~~~k~kEikNGRLAMlA~~G~~~q~~vtg~Gp~~nL~~hladP~~~ni~~~~~~ 251 (252)
T PLN00147 198 HDWKLKEIKNGRLAMVAMLGFFVQASVTHTGPIDNLLTHLSDPWHKTIIQTLSH 251 (252)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcCCChHHHHHHHhcCcccchhhhhhcC
Confidence 999999999999999999999999999999999999999999999999999875
No 6
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=100.00 E-value=1.3e-65 Score=471.54 Aligned_cols=187 Identities=45% Similarity=0.855 Sum_probs=164.7
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCcCccccCCCCCHHH--------------------------------------
Q 024422 56 AAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPET-------------------------------------- 97 (268)
Q Consensus 56 ~~~~~~~r~~~~p~~~~P~~l~G~~pGd~GfDPlGL~~d~~~-------------------------------------- 97 (268)
+.+++++|++|||+.++|+||||++|||||||||||++|||.
T Consensus 45 ~~~~~~~r~~w~p~~~~P~~LdGslpGD~GfDplgL~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 124 (286)
T PLN00187 45 SSKVGADRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEASEIKSTPFQPY 124 (286)
T ss_pred ccCCCCCccccCCCCCCcccccCCCCCcCCCCcccccCChHhhhhcccchhhhhhhcccccccccccccccccccccCcc
Confidence 457899999999999999999999999999999999999986
Q ss_pred -----HHHhhhhhhhccchhhhhhhhhhhhhhhhccCCCCCCcccccCcc------ccccc-----hhhHHHHHHHHHHH
Q 024422 98 -----LRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGEL------EYFTD-----TTTLFIVEMIFIGW 161 (268)
Q Consensus 98 -----~~~~r~aEl~HGR~AMla~~G~~~~e~~~~~G~l~~~~w~~aG~~------~~~~~-----~~~l~~~qi~l~g~ 161 (268)
++||||+||+||||||||++||++||++++ . .|+++|.. .|+.. .++++++|+++||+
T Consensus 125 ~~~f~l~r~REaELiHGRwAMLAvaG~lvpEll~G--~----~W~~aG~~~~~~g~~y~g~~~p~~~~~l~~iqvllmG~ 198 (286)
T PLN00187 125 SEVFGLQRFRECELIHGRWAMLATLGALSVEALTG--V----TWQDAGKVELVDGSSYLGQPLPFSITTLIWIEVLVIGY 198 (286)
T ss_pred hhhhHHHHHHHHHhhhhHHHHHHhhchhhHHhccC--C----cccccccccccccccccccccchhHHHHHHHHHHHHHH
Confidence 699999999999999999999999999853 2 47777642 23332 25678999999999
Q ss_pred HHhhhhhcccCCcccCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCChHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhc
Q 024422 162 AEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYT 241 (268)
Q Consensus 162 ~E~~r~~~~~~~G~~~~~~~f~~~~~~~~d~~yPGd~gFDPLgl~~~d~e~~~~~k~kELkNGRLAMlAi~G~~~Q~~vT 241 (268)
+|.+|+.+. ...+..||||++||||||. +|+|+++++|++|||||||||+|++||++|+++|
T Consensus 199 ~E~~R~~~~-----------------~~~~~~yPGg~~FDPlGl~-~d~e~~~~~k~kEIkNGRLAMlA~lG~~vq~~vt 260 (286)
T PLN00187 199 IEFQRNAEL-----------------DPEKRLYPGGKFFDPLGLA-ADPEKKETLQLAEIKHARLAMVAFLGFAVQAAAT 260 (286)
T ss_pred HHhhhccCC-----------------CCCCCCCCccccccccccC-CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc
Confidence 999997531 1124569999889999998 5999999999999999999999999999999999
Q ss_pred CCCchhHHHHhhcCCcccccccccc
Q 024422 242 GTGPIDNLIAHLADPGHATVFAAFT 266 (268)
Q Consensus 242 G~gPl~nL~~hladP~~~n~~~~~~ 266 (268)
|+||++||.+||+||+||||+++|.
T Consensus 261 g~GPi~nL~~Hladp~~~n~~~~~~ 285 (286)
T PLN00187 261 GKGPLNNWATHLSDPLHTTIIDTFS 285 (286)
T ss_pred CCChHHHHHHHhcCcccccHHHhcc
Confidence 9999999999999999999999985
No 7
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=100.00 E-value=6.4e-64 Score=456.13 Aligned_cols=196 Identities=43% Similarity=0.820 Sum_probs=170.9
Q ss_pred cccccCCCCCCCCC-CCC-CCCCCCCCCCCCCcCccccCCCCCHHHHHHhhhhhhhccchhhhhhhhhhhhhhhhccCC-
Q 024422 54 VSAAAADPNRPLWF-PGS-TPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI- 130 (268)
Q Consensus 54 ~~~~~~~~~r~~~~-p~~-~~P~~l~G~~pGd~GfDPlGL~~d~~~~~~~r~aEl~HGR~AMla~~G~~~~e~~~~~G~- 130 (268)
+.+.||++||++|| |+. ++|+||||++||||||||+||++|+++++|||++||+||||||||++||++||+++..|+
T Consensus 42 ~~~~~~g~~R~~~l~p~~~~~P~~Ldg~~pGD~GfDPlGls~dp~~~~~~re~El~hGR~AMLa~~G~i~~e~l~~~g~~ 121 (262)
T PLN00025 42 SGSIWYGPDRPKYLGPFSGETPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNGVK 121 (262)
T ss_pred ccccccCCCCccccCCcccCCcccccCcCCCCCCCCccccccCHHHHHHHHHHHHhccHHHHHHHhhhhhHHHhhcCCcC
Confidence 35668999999999 554 799999999999999999999999999999999999999999999999999999988776
Q ss_pred CCCCcccccCc-------cccccch--------hhHHHHHHHHHHHHHhhhhhcccCCcccCCCCCCCCCCCCCCCCCCC
Q 024422 131 LNTPSWYTAGE-------LEYFTDT--------TTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYP 195 (268)
Q Consensus 131 l~~~~w~~aG~-------~~~~~~~--------~~l~~~qi~l~g~~E~~r~~~~~~~G~~~~~~~f~~~~~~~~d~~yP 195 (268)
+..+.||++|. .+|+..+ ++++++|+++||++|.+|+.+. + + ....|+.||
T Consensus 122 ~~~~~W~~ag~~~~~~gg~~y~~~p~~~~~~~~~a~~~~qv~lmg~~E~~r~~~~--~--~----------~~~~d~~yP 187 (262)
T PLN00025 122 FGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVNGG--P--L----------GEGLDPLYP 187 (262)
T ss_pred cCcccccccccccccccccccccCcccchhhhHHHHHHHHHHHHHHHHHhcccCC--c--c----------cccccCcCC
Confidence 56677998874 3454432 4567789999999999987641 1 1 012355799
Q ss_pred CCcccCCCCCCCCChHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhcCCCchhHHHHhhcCCccccccccc
Q 024422 196 GGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAF 265 (268)
Q Consensus 196 Gd~gFDPLgl~~~d~e~~~~~k~kELkNGRLAMlAi~G~~~Q~~vTG~gPl~nL~~hladP~~~n~~~~~ 265 (268)
||+ ||||||. +|+|+++++|++|||||||||+||+||++|+++||+||++||.+||+||+||||+++.
T Consensus 188 G~~-FDPlGl~-~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vTG~GPlenL~~hladP~~~n~~~~~ 255 (262)
T PLN00025 188 GGS-FDPLGLA-DDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVANNAWAYA 255 (262)
T ss_pred ccc-CCccccC-CCHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHHhcCccccchhhhh
Confidence 999 9999998 5999999999999999999999999999999999999999999999999999999864
No 8
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=100.00 E-value=1.5e-62 Score=456.18 Aligned_cols=205 Identities=38% Similarity=0.687 Sum_probs=174.5
Q ss_pred ccccccCCCCCCCCCCCC--CCCCCCCCCCCCCcCccccCCCCCHHHHHHhhhhhhhccchhhhhhhhhhhhhhhhccCC
Q 024422 53 SVSAAAADPNRPLWFPGS--TPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI 130 (268)
Q Consensus 53 ~~~~~~~~~~r~~~~p~~--~~P~~l~G~~pGd~GfDPlGL~~d~~~~~~~r~aEl~HGR~AMla~~G~~~~e~~~~~G~ 130 (268)
...+.||+++|++|||.. ++|+||||++|||||||||||++|+++++|||++|||||||||||++|+++||++++.|.
T Consensus 98 ~~~~~~~g~~R~~wl~~~~~~~P~yLdG~lpGD~GFDPLGL~~dp~~l~~~reaELkHGR~AMLA~~G~lv~e~l~~~g~ 177 (324)
T PLN00171 98 RNESFWYGEERPRWLGPIPYDYPDHLTGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVLDLFGA 177 (324)
T ss_pred cccCcccCCCCccccCCCCCCCCcccCCCCCcccCCCccccccCHHHHHHHHHHHhccchHHHHHHhhHHHHHHhccCCc
Confidence 445789999999999765 799999999999999999999999999999999999999999999999999999988765
Q ss_pred --CCCCcccccCcc-------ccccc----------hhhHHHHHHHHHHHHHhhhhhcccCCcccCCCCCCCCCCCCCCC
Q 024422 131 --LNTPSWYTAGEL-------EYFTD----------TTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTD 191 (268)
Q Consensus 131 --l~~~~w~~aG~~-------~~~~~----------~~~l~~~qi~l~g~~E~~r~~~~~~~G~~~~~~~f~~~~~~~~d 191 (268)
+..+.||++|.. +|+.. .++++++|+++|+.+|++|++++..++..+ +. ...|
T Consensus 178 ~~~~~p~W~~aG~~~~~g~~~~y~~~p~~~~~~~q~l~~i~~iEillm~g~E~~R~~~~~~~~~~g-------~~-~PGD 249 (324)
T PLN00171 178 VHFAEPVWWRVGYAKLQGDTLDYLGIPGLHIAGSQGVIVIAICQALLMVGPEYARYCGIEALEPLG-------IY-LPGD 249 (324)
T ss_pred cccCccchhhcccccccccchhhccCCccccchhHHHHHHHHHHHHHhhhhhheeeccccccCCcc-------cc-CCCc
Confidence 345679988742 22221 234678899889889999987754332211 11 1236
Q ss_pred CCCCCCcccCCCCCCCCChHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhcCCCchhHHHHhhcCCcccccccccc
Q 024422 192 VGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 266 (268)
Q Consensus 192 ~~yPGd~gFDPLgl~~~d~e~~~~~k~kELkNGRLAMlAi~G~~~Q~~vTG~gPl~nL~~hladP~~~n~~~~~~ 266 (268)
.+||||.+||||||. +|+++++++|++|||||||||+||+||++|+.+||++|++||.+||+||+||||+++|+
T Consensus 250 ~gYPGG~~FDPLGl~-~d~~~~~~~k~kELkNGRLAM~A~lG~~vq~~vTG~GPlenL~~hladP~~~Ni~~~~~ 323 (324)
T PLN00171 250 INYPGGALFDPLGLS-KDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVDHLSDPLHNNLLSSLK 323 (324)
T ss_pred ccCCcccCCCccccC-CCHHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhcCCChHHHHHHHhcCccccchHHHhc
Confidence 679999889999998 59999999999999999999999999999999999999999999999999999999986
No 9
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=100.00 E-value=2.8e-61 Score=434.54 Aligned_cols=179 Identities=41% Similarity=0.807 Sum_probs=159.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcCccccCCCCCHHHHHHhhhhhhhccchhhhhhhhhhhhhhhhccCCCCCCcccc
Q 024422 59 ADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYT 138 (268)
Q Consensus 59 ~~~~r~~~~p~~~~P~~l~G~~pGd~GfDPlGL~~d~~~~~~~r~aEl~HGR~AMla~~G~~~~e~~~~~G~l~~~~w~~ 138 (268)
...+|++|||+.++|+||||++||||||||+||++|+++++|+|++|||||||||||++|+++||+++. +.|++
T Consensus 31 ~~~~r~~W~P~~~~P~~Ldg~~pGd~GFDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~E~~~~------P~w~~ 104 (246)
T PLN00100 31 AARARPMWYPGATAPKYLDGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDAVGL------PKFWE 104 (246)
T ss_pred ccCCCcccCCCCCCCCCCCCCCCCCcCCCccccCCCHHHHHHHHHHHhhcchHHHHHHhhhhHHHHhcc------cchhh
Confidence 446899999999999999999999999999999999999999999999999999999999999999763 35888
Q ss_pred cCccccccchhhHHHHHHHHHHHHHhhhhhcccCCcccCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCChHHHHHHHH
Q 024422 139 AGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRT 218 (268)
Q Consensus 139 aG~~~~~~~~~~l~~~qi~l~g~~E~~r~~~~~~~G~~~~~~~f~~~~~~~~d~~yPGd~gFDPLgl~~~d~e~~~~~k~ 218 (268)
+|...+..+.++++++|+++||++|.+|++++..+| +.++||+++||||||.+ +++|+
T Consensus 105 ag~~~~~~~~~~l~~iqill~g~~E~~r~~~~~~~g----------------~~~~pg~~~FDPLGl~~------~~~K~ 162 (246)
T PLN00100 105 AGAEKYGLDLQTLVLIQVVVMAVLEAARYRGFMKTG----------------ESGVLSFFPFDPTGMDS------PEMKV 162 (246)
T ss_pred cchhhhccchhHHHHHHHHHHHHHhhhccccccccc----------------ccCCCCCCCCCcccccH------HHHHH
Confidence 887666556778889999999999999987653332 12468899999999962 57999
Q ss_pred HHHhhhhhHHHHHHHHHHhhhhcCCCchhHHHHhhcCCccccccccc
Q 024422 219 KEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAF 265 (268)
Q Consensus 219 kELkNGRLAMlAi~G~~~Q~~vTG~gPl~nL~~hladP~~~n~~~~~ 265 (268)
|||||||||||||+||++|+++||+||++||.+|++||+||||+++.
T Consensus 163 KEIkNGRLAMlA~lG~~~Q~~vTG~gPlenL~~hladP~~~ni~~~~ 209 (246)
T PLN00100 163 KEVKNGRLAMLAFLGMVSQYAVTGKSPLEGLKAHMANPGHVNIFTSS 209 (246)
T ss_pred HHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHhccCCcccccccCC
Confidence 99999999999999999999999999999999999999999999864
No 10
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=100.00 E-value=1.7e-60 Score=430.12 Aligned_cols=188 Identities=44% Similarity=0.837 Sum_probs=156.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCcCccccCCCCCHHHHHHhhhhhhhccchhhhhhhhhhhhhhhhccCCCCCCcc--cc
Q 024422 61 PNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSW--YT 138 (268)
Q Consensus 61 ~~r~~~~p~~~~P~~l~G~~pGd~GfDPlGL~~d~~~~~~~r~aEl~HGR~AMla~~G~~~~e~~~~~G~l~~~~w--~~ 138 (268)
++|..|+|+.++|+||||++||||||||+||++++++++|||++|||||||||||++||++||+++....+....| +.
T Consensus 42 ~~~~~w~P~~~~P~~Ldg~~pgd~GfDPlgls~~~~~~~~~r~~ELkHGR~AMLAv~G~i~~E~l~~~~w~~a~~~~~~~ 121 (243)
T PLN00099 42 TMSADWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAIP 121 (243)
T ss_pred cccccccCCCCCCccCCCCCCcccCCCccccccCHHHHHHHHHHhccCCcHHHHHHhhHHHHHHhccCCcccccchhccC
Confidence 5788999999999999999999999999999999999999999999999999999999999999764322222111 11
Q ss_pred cCcccc------ccchhhHHHHHHHHHHHHHhhhhhcccCCcccCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCChHH
Q 024422 139 AGELEY------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEK 212 (268)
Q Consensus 139 aG~~~~------~~~~~~l~~~qi~l~g~~E~~r~~~~~~~G~~~~~~~f~~~~~~~~d~~yPGd~gFDPLgl~~~d~e~ 212 (268)
.|...| |...++++++|+++||++|.+|+... + ..+..|||| .||||||. +|+++
T Consensus 122 ~g~~~~~g~~~~~~~l~~~~~iqvl~ig~~E~~r~~~~---~--------------~~~~~yPGd-~FDPlGl~-kd~~~ 182 (243)
T PLN00099 122 GGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEK---D--------------PEKKKYPGG-AFDPLGYS-KDPKK 182 (243)
T ss_pred cchhhhccCccchhhHHHHHHHHHHHHHHHHHHhhccC---C--------------CCCCcCCCC-cCCccccc-CCHHH
Confidence 122222 22346788899999999998875320 0 013469999 59999998 59999
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhh-hhcCCCchhHHHHhhcCCccccccccccC
Q 024422 213 VKELRTKEIKNGRLAMLAVMGAWFQH-IYTGTGPIDNLIAHLADPGHATVFAAFTP 267 (268)
Q Consensus 213 ~~~~k~kELkNGRLAMlAi~G~~~Q~-~vTG~gPl~nL~~hladP~~~n~~~~~~~ 267 (268)
++++|+|||||||||||||+||++|+ ++||++|++||.+||+||+||||++.+..
T Consensus 183 ~~~~k~kELkNGRLAMiA~lGf~vQ~~~~~G~gPl~nL~~hladp~~~N~~~~~~~ 238 (243)
T PLN00099 183 FEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIIIP 238 (243)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCChHHHHHHHhcCCccCceeeeecc
Confidence 99999999999999999999999998 67999999999999999999999998743
No 11
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=100.00 E-value=1.6e-56 Score=405.84 Aligned_cols=191 Identities=39% Similarity=0.783 Sum_probs=162.9
Q ss_pred ccccccCCCCCCCCCCCCC------CCCCCCCCCCCCcCccccCCCCCHHHHHHhhhhhhhccchhhhhhhhhhhhhhhh
Q 024422 53 SVSAAAADPNRPLWFPGST------PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLT 126 (268)
Q Consensus 53 ~~~~~~~~~~r~~~~p~~~------~P~~l~G~~pGd~GfDPlGL~~d~~~~~~~r~aEl~HGR~AMla~~G~~~~e~~~ 126 (268)
+.++.....+|+.|+|+.. +|+||||++||||||||+||++|+++++|||++||+||||||||++||++||+++
T Consensus 41 ~~v~~~a~~~~k~w~p~~~~~~~~~~P~~l~g~~PGd~GFDPlgl~~d~e~~~~~r~~El~hGR~AMLa~~G~~v~e~l~ 120 (255)
T PLN00170 41 LLVVAAAAQPKKSWIPAVKGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 120 (255)
T ss_pred eEEEEeccCCCccccCCCCCCcccCCcccccccCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHhhhhHHHcc
Confidence 3344445578999999874 7999999999999999999999999999999999999999999999999999986
Q ss_pred ccCCCCCCcccccCcccccc---chhhHHHHHHHHHHHHHhhhhhcccCCcccCCCCCCCCCC------CCCCCCCCCCC
Q 024422 127 KLGILNTPSWYTAGELEYFT---DTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNK------LTGTDVGYPGG 197 (268)
Q Consensus 127 ~~G~l~~~~w~~aG~~~~~~---~~~~l~~~qi~l~g~~E~~r~~~~~~~G~~~~~~~f~~~~------~~~~d~~yPGd 197 (268)
.. .||++|...++. ...+++.+|+++||++|.+||+++.+||++..++.++..+ ....+.+||||
T Consensus 121 g~------~w~~aG~~~~~~~p~~~~~l~~~q~~lmg~~E~~R~~~~~~P~~~~~~~~~p~~~~~~~f~~~~g~~~yPGG 194 (255)
T PLN00170 121 GI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSRTAENFANATGLQGYPGG 194 (255)
T ss_pred CC------ChhhCCccccccCccchHHHHHHHHHHhhhhhheeeccccCCcccccccccccccccccccccCCCcccCCC
Confidence 32 589988643222 2356888999999999999999999999988887765432 12235689999
Q ss_pred cccCCCCCCCC--------ChHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhcCCCchhHHH
Q 024422 198 LWFDPLGWGSG--------SPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLI 250 (268)
Q Consensus 198 ~gFDPLgl~~~--------d~e~~~~~k~kELkNGRLAMlAi~G~~~Q~~vTG~gPl~nL~ 250 (268)
..||||||.++ |+|+++++|++|||||||||+|++||++|+ .||++||+||.
T Consensus 195 ~~FDPLGl~~~~~~~~~~~d~~~~~~lk~kEIKnGRLAMlA~lGf~~Qa-~~g~~p~~~l~ 254 (255)
T PLN00170 195 KFFDPLGLAGTVKDGVYIPDFEKLERLKLAEIKHARLAMVAMLIFYFEA-GQGKTPLGALG 254 (255)
T ss_pred cccCccccccccccccccCCHHHHHHHHHHHHhhhHHHHHHHHhHheee-ccCCCchhhhc
Confidence 88999999852 899999999999999999999999999999 79999999983
No 12
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=100.00 E-value=5e-43 Score=296.38 Aligned_cols=151 Identities=44% Similarity=0.725 Sum_probs=122.5
Q ss_pred CCCCCCCCCCCCcCccccCCCCCHHHHHHhhhhhhhccchhhhhhhhhhhhhhhhccCC----CCCCcccccCccccccc
Q 024422 72 PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI----LNTPSWYTAGELEYFTD 147 (268)
Q Consensus 72 ~P~~l~G~~pGd~GfDPlGL~~d~~~~~~~r~aEl~HGR~AMla~~G~~~~e~~~~~G~----l~~~~w~~aG~~~~~~~ 147 (268)
+|+||||+++|||||||+||++++ +++|+|++||||||+||||++|++++|+++..+. ...+.|.+++. + .
T Consensus 1 ~p~~l~G~~~~~~gfDPlgl~~~~-~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~~~~~~~~~~~~~~~~~~---~-~ 75 (156)
T PF00504_consen 1 PPPYLDGSVPGDYGFDPLGLSSDP-DFAWYREAELKHGRVAMLAFVGALVQEAGTGFPGVPSFLGQPAWAEAGG---I-P 75 (156)
T ss_dssp --TTTTSTSTTSTSSSTTTTTTSH-HHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTTTSSS-SSTSSSSSSTTS---S-S
T ss_pred CcccccCCCCCCCCCChhhcccch-hHHHHHHhHHHhhhhhhhhhHHHHHHHHhccCCcccccccccchhhhhh---h-h
Confidence 699999999999999999999877 9999999999999999999999999999876432 33455766442 1 2
Q ss_pred hhhHHHHHH-HHHHHHHhhhhhcccCCcccCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCChHHHHHHHHHHHhhhhh
Q 024422 148 TTTLFIVEM-IFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRL 226 (268)
Q Consensus 148 ~~~l~~~qi-~l~g~~E~~r~~~~~~~G~~~~~~~f~~~~~~~~d~~yPGd~gFDPLgl~~~d~e~~~~~k~kELkNGRL 226 (268)
.+..+++|+ ++||++|..+.++...++... ..+..||||++|||+|+. +|+++++++|++|||||||
T Consensus 76 ~~~~~~~~~l~~ig~~e~~~~~~~~~~~~~~-----------~~~~~~pG~~~~dplgl~-~~~~~~~~~~~~El~NGRl 143 (156)
T PF00504_consen 76 VPAAGWAQILLFIGALEPWRQQGVPEPGEGG-----------GKDGRYPGDLGFDPLGLA-KDPEEKEFMQLAELKNGRL 143 (156)
T ss_dssp SHSHHHHHHHHHHHHHHHHHHHHTTTCCTTS-----------SSSSSSSSSSSSSTSSTS-SSCHSHHCHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHhHhhhhhcccccCCcccc-----------cccccCccccccchhhhh-hhhhhhHHHHHHHHHHHHH
Confidence 566666664 789999999887644332211 134469999999999998 7999999999999999999
Q ss_pred HHHHHHHHHHhhh
Q 024422 227 AMLAVMGAWFQHI 239 (268)
Q Consensus 227 AMlAi~G~~~Q~~ 239 (268)
|||||+|+++|+.
T Consensus 144 AMla~~g~~~~e~ 156 (156)
T PF00504_consen 144 AMLAFAGFVAQEA 156 (156)
T ss_dssp HHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999973
No 13
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=100.00 E-value=4.4e-43 Score=311.29 Aligned_cols=163 Identities=29% Similarity=0.370 Sum_probs=126.5
Q ss_pred CCCCCCCCCCCCCCCCCcCccccCCCC-CHHHHHHhhhhhhhccchhhhhhhhhhhhhhhhccCCCCCCcccccCc--cc
Q 024422 67 FPGSTPPEWLDGSLPGDFGFDPLGLGS-DPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGE--LE 143 (268)
Q Consensus 67 ~p~~~~P~~l~G~~pGd~GfDPlGL~~-d~~~~~~~r~aEl~HGR~AMla~~G~~~~e~~~~~G~l~~~~w~~aG~--~~ 143 (268)
.|+.+.|+.|||+ .||+||||+||++ ++++++|+|++||||||+||||++|+++||+++.+|.+. ++.... ..
T Consensus 41 ~pf~~~~p~l~g~-~Gd~~fDPlgl~~~~~~~~~~~r~~ElkhGR~AMlA~~G~~~~~~~~~pG~~~---~~~~~p~~~~ 116 (209)
T PLN00089 41 IGFAAKEFMFIGK-TGSKKFDPLGLAEKVEEFLPWFRESELKHGRAAMLAVAGFIAPDFVRIPGEAY---SFAAIPKTID 116 (209)
T ss_pred cccccCCccccCC-CCccCcCCccCCCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCccc---cccccccHHH
Confidence 4777888899999 9999999999985 678899999999999999999999999999998887542 111110 11
Q ss_pred cccchhhH-HHHHH-HHHHHHHhhhhhcccCCcccCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCChHHHHHHHHHHH
Q 024422 144 YFTDTTTL-FIVEM-IFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEI 221 (268)
Q Consensus 144 ~~~~~~~l-~~~qi-~l~g~~E~~r~~~~~~~G~~~~~~~f~~~~~~~~d~~yPGd~gFDPLgl~~~d~e~~~~~k~kEL 221 (268)
.+...+.. .++|| ++||++|..... +.... ...+..||||++||||||.++|+++++++|++||
T Consensus 117 a~~~~~~~g~~~Qi~~~ig~~E~~~~~----~~~~~----------~~~~~~~PGd~gfdplgl~~~d~~~~~~~~~~El 182 (209)
T PLN00089 117 AHDALLKSGAMIQIFAWIGFVDLAVSA----PAAAA----------AAEFDRTPGDFGFDLLALYPKDAAKMEKKKDKEL 182 (209)
T ss_pred HHHhhcccccHHHHHHHHHHHHHHHhh----ccccc----------cccCCCCCCCcCccccccCCCCHHHHHHHHHHHH
Confidence 12222322 36787 579999964221 11110 0012368999999999997789999999999999
Q ss_pred hhhhhHHHHHHHHHHhhhhcCCCchh
Q 024422 222 KNGRLAMLAVMGAWFQHIYTGTGPID 247 (268)
Q Consensus 222 kNGRLAMlAi~G~~~Q~~vTG~gPl~ 247 (268)
||||||||||+||++|+++||+++++
T Consensus 183 ~NGRlAM~a~~g~~~~~~~tg~g~~~ 208 (209)
T PLN00089 183 KNGRLAMVAIGGIATGSAITGHGFPY 208 (209)
T ss_pred hhhHHHHHHHHHHHHHHHHcCCCCCc
Confidence 99999999999999999999998763
No 14
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=100.00 E-value=7.2e-36 Score=264.04 Aligned_cols=143 Identities=26% Similarity=0.394 Sum_probs=108.8
Q ss_pred ccccCCC--CCHHHHHHhhhhhhhccchhhhhhhhhhhhhh-hhccCCCCCC-ccccc--CccccccchhhHHHHHH-HH
Q 024422 86 FDPLGLG--SDPETLRWNVQSEIVHCRWAMLGAAGIFIPEL-LTKLGILNTP-SWYTA--GELEYFTDTTTLFIVEM-IF 158 (268)
Q Consensus 86 fDPlGL~--~d~~~~~~~r~aEl~HGR~AMla~~G~~~~e~-~~~~G~l~~~-~w~~a--G~~~~~~~~~~l~~~qi-~l 158 (268)
|||+||+ .|+++++|+|++|||||||||||++||++||+ ++.+|.++.. ..+.. .....+..++..+++|| ++
T Consensus 47 fDPlgl~~~~~~~~~~~~r~~ElkhGRlAMlA~~G~~~~~~g~~~Pg~~~~~g~~~~~~p~~~~a~~~vp~~g~~qi~~~ 126 (202)
T PLN00120 47 FDPLGLVDDGDQEKFDRLRYVEIKHGRISMLAVVGYLVTEAGIRLPGDIDYSGTSFSDIPNGFAALDAIPTAGLLQILAF 126 (202)
T ss_pred CCCCccCCCCCHHHHHHHHHHHhhcccHHHHhhccceeecccccCCCccccccccccccccchhhhhhcchhHHHHHHHH
Confidence 9999997 47899999999999999999999999999997 5666654211 12221 01123455677889997 67
Q ss_pred HHHHHhhhhhcccCCcccCCCCCCCCCCCCCCCCCCCCCcccC--CCCCCCCChHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 024422 159 IGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFD--PLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWF 236 (268)
Q Consensus 159 ~g~~E~~r~~~~~~~G~~~~~~~f~~~~~~~~d~~yPGd~gFD--PLgl~~~d~e~~~~~k~kELkNGRLAMlAi~G~~~ 236 (268)
||++|..++.+.. | +..+|||+.++ +|||.+.|+|+++++|++||||||||||||+||++
T Consensus 127 ig~~E~~~~~~~~--~----------------~~~~pGd~~~g~~d~gfdp~~~~~~~~~~~~EL~NGRLAMiai~G~~~ 188 (202)
T PLN00120 127 IGFLELAVMKDIT--G----------------EGEFVGDFRNGYIDFGWDSFDEETKLKKRAIELNQGRAAQMGILALMV 188 (202)
T ss_pred HHHHHHHhhcccc--c----------------CCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999987654310 0 12467765332 55665558999999999999999999999999999
Q ss_pred hhhhcCCCch
Q 024422 237 QHIYTGTGPI 246 (268)
Q Consensus 237 Q~~vTG~gPl 246 (268)
|+.++|+.|+
T Consensus 189 qe~l~g~~~~ 198 (202)
T PLN00120 189 HEQLGVELPI 198 (202)
T ss_pred HHHccCCCcC
Confidence 9999999886
No 15
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=99.61 E-value=5.3e-16 Score=142.45 Aligned_cols=57 Identities=40% Similarity=0.609 Sum_probs=52.1
Q ss_pred CCCCCCCcccCCCCCCCCChHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhcCCCchhH
Q 024422 191 DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDN 248 (268)
Q Consensus 191 d~~yPGd~gFDPLgl~~~d~e~~~~~k~kELkNGRLAMlAi~G~~~Q~~vTG~gPl~n 248 (268)
|..+|||+|||||||. +|+|+++++|.+||||||+||||++|+++|+++++.|++++
T Consensus 76 dG~~pGD~GFDPlgl~-~~~~~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g~~~~ 132 (267)
T PLN00098 76 DGSLPGDFGFDPLGLG-SDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLGFIEN 132 (267)
T ss_pred CCCCCCCCCcCccccC-CCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCcccc
Confidence 3358999999999998 58999999999999999999999999999999999887764
No 16
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=99.59 E-value=9.5e-16 Score=139.64 Aligned_cols=55 Identities=40% Similarity=0.641 Sum_probs=51.4
Q ss_pred CCCCCCCcccCCCCCCCCChHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhcCCCch
Q 024422 191 DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI 246 (268)
Q Consensus 191 d~~yPGd~gFDPLgl~~~d~e~~~~~k~kELkNGRLAMlAi~G~~~Q~~vTG~gPl 246 (268)
|..+|||++||||||. +|+++++++|.+||+||||||||++|+++|+++|+.|++
T Consensus 67 dG~~PGD~GFDPlGl~-~d~~~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~~g~~ 121 (250)
T PLN00101 67 NGSLPGDNGFDPLGLA-EDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGII 121 (250)
T ss_pred CCCCCCccCCCccccC-CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCCCc
Confidence 3458999999999998 599999999999999999999999999999999998876
No 17
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=99.57 E-value=3.2e-15 Score=136.41 Aligned_cols=76 Identities=34% Similarity=0.567 Sum_probs=61.6
Q ss_pred HhhhhhcccCCcccCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCChHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhcC
Q 024422 163 EGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTG 242 (268)
Q Consensus 163 E~~r~~~~~~~G~~~~~~~f~~~~~~~~d~~yPGd~gFDPLgl~~~d~e~~~~~k~kELkNGRLAMlAi~G~~~Q~~vTG 242 (268)
.-.+|.+..+||+....|.+ .|..+|||++||||+|. +|+|.++++|.+||+|||+||||++|+++|+++||
T Consensus 50 ~~k~w~p~~~~~~~~~~P~~-------l~g~~PGd~GFDPlgl~-~d~e~~~~~r~~El~hGR~AMLa~~G~~v~e~l~g 121 (255)
T PLN00170 50 PKKSWIPAVKGGGNLVDPEW-------LDGSLPGDYGFDPLGLG-KDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSG 121 (255)
T ss_pred CCccccCCCCCCcccCCccc-------ccccCCCCCCcCccccC-CCHHHHHHHHHHHhhccHHHHHHHHhhhhHHHccC
Confidence 33466666677766544443 23458999999999998 59999999999999999999999999999999998
Q ss_pred CCch
Q 024422 243 TGPI 246 (268)
Q Consensus 243 ~gPl 246 (268)
...+
T Consensus 122 ~~w~ 125 (255)
T PLN00170 122 IPWF 125 (255)
T ss_pred CChh
Confidence 6433
No 18
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=99.54 E-value=3.6e-15 Score=136.09 Aligned_cols=60 Identities=33% Similarity=0.438 Sum_probs=54.7
Q ss_pred CCCCCCCCCCCcCccccCCCCCHHHHHHhhhhhhhccchhhhhhhhhhhhhhhhccCCCC
Q 024422 73 PEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILN 132 (268)
Q Consensus 73 P~~l~G~~pGd~GfDPlGL~~d~~~~~~~r~aEl~HGR~AMla~~G~~~~e~~~~~G~l~ 132 (268)
+..+++.+|||++|||+||++|++++++++.+||||||+||+|++|+++|+++++.|++.
T Consensus 172 ~~~~~~~yPGd~~FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vtg~Gp~~ 231 (252)
T PLN00147 172 LEGLEPGYPGGPLFNPLGLAKDIENAHDWKLKEIKNGRLAMVAMLGFFVQASVTHTGPID 231 (252)
T ss_pred ccccCCCCcccccCCccccCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCChHH
Confidence 456677799999999999999999999999999999999999999999999999877653
No 19
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=99.51 E-value=7e-15 Score=134.88 Aligned_cols=55 Identities=35% Similarity=0.571 Sum_probs=51.0
Q ss_pred CCCCCCCcCccccCCCCCHHHHHHhhhhhhhccchhhhhhhhhhhhhhhhccCCC
Q 024422 77 DGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGIL 131 (268)
Q Consensus 77 ~G~~pGd~GfDPlGL~~d~~~~~~~r~aEl~HGR~AMla~~G~~~~e~~~~~G~l 131 (268)
|..+|||++|||+||++|+|+++++|.+|||||||||+|++||++|+++++.|.+
T Consensus 186 d~~yPG~~~fDPlGl~~~~e~~~~~k~~EiknGRLAM~A~~G~~~q~~~tg~gp~ 240 (262)
T PLN00048 186 NPAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVGPF 240 (262)
T ss_pred ccccccccccCccccccchHHHHHHHHHHHhhhHHHHHHhhhHhhhhhhcCCCHH
Confidence 3459999999999999999999999999999999999999999999999887754
No 20
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=99.49 E-value=1.7e-14 Score=128.57 Aligned_cols=54 Identities=33% Similarity=0.505 Sum_probs=49.8
Q ss_pred CCCCCCcCccccCC-CCCHHHHHHhhhhhhhccchhhhhhhhhhhhhhhhccCCC
Q 024422 78 GSLPGDFGFDPLGL-GSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGIL 131 (268)
Q Consensus 78 G~~pGd~GfDPlGL-~~d~~~~~~~r~aEl~HGR~AMla~~G~~~~e~~~~~G~l 131 (268)
+..||||||||+|| .+|+++++++|.+||+|||+||+|++|+++||++++.|++
T Consensus 153 ~~~PGd~gfdplgl~~~d~~~~~~~~~~El~NGRlAM~a~~g~~~~~~~tg~g~~ 207 (209)
T PLN00089 153 DRTPGDFGFDLLALYPKDAAKMEKKKDKELKNGRLAMVAIGGIATGSAITGHGFP 207 (209)
T ss_pred CCCCCCcCccccccCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCC
Confidence 46899999999999 4689999999999999999999999999999999887754
No 21
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=99.48 E-value=2.7e-14 Score=133.80 Aligned_cols=54 Identities=30% Similarity=0.398 Sum_probs=49.2
Q ss_pred CCCCCCCcccCCCCCCCCChHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhcCCCc
Q 024422 191 DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGP 245 (268)
Q Consensus 191 d~~yPGd~gFDPLgl~~~d~e~~~~~k~kELkNGRLAMlAi~G~~~Q~~vTG~gP 245 (268)
|..+|||+|||||||++ |+++++++|.+||||||+||||++|+++|+++++.+.
T Consensus 124 dG~lpGD~GFDPLGL~~-dp~~l~~~reaELkHGR~AMLA~~G~lv~e~l~~~g~ 177 (324)
T PLN00171 124 TGELPGDYGFDIAGLGK-DPVAFDKYFNFEILHARWAMLAALGVVIPEVLDLFGA 177 (324)
T ss_pred CCCCCcccCCCcccccc-CHHHHHHHHHHHhccchHHHHHHhhHHHHHHhccCCc
Confidence 44689999999999984 9999999999999999999999999999999886553
No 22
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=99.47 E-value=3.8e-14 Score=128.74 Aligned_cols=54 Identities=33% Similarity=0.479 Sum_probs=49.9
Q ss_pred CCCCCCCcccCCCCCCCCChHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhcCCCc
Q 024422 191 DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGP 245 (268)
Q Consensus 191 d~~yPGd~gFDPLgl~~~d~e~~~~~k~kELkNGRLAMlAi~G~~~Q~~vTG~gP 245 (268)
|...|||++||||||+ +|+|+++++|.+||+|||+||||++|+++|+++++.+.
T Consensus 58 dG~~pGD~GfDPlGl~-~~~~~~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~ 111 (244)
T PLN00097 58 DGSLPCDYGFDPLNLG-ADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGM 111 (244)
T ss_pred CCCCCCCCCCCccccC-cCHHHHHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCc
Confidence 4458999999999998 58999999999999999999999999999999998764
No 23
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=99.45 E-value=3.3e-14 Score=131.69 Aligned_cols=56 Identities=39% Similarity=0.497 Sum_probs=51.5
Q ss_pred CCCCCCCcCccccCCCCCHHHHHHhhhhhhhccchhhhhhhhhhhhhhhhccCCCC
Q 024422 77 DGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILN 132 (268)
Q Consensus 77 ~G~~pGd~GfDPlGL~~d~~~~~~~r~aEl~HGR~AMla~~G~~~~e~~~~~G~l~ 132 (268)
+..+|||++|||+||++|+++++++|.+|||||||||+|++||++|+++++.|.+.
T Consensus 211 ~~~yPGg~~FDPlGl~~d~e~~~~~k~kEIkNGRLAMlA~lG~~vq~~vtg~GPi~ 266 (286)
T PLN00187 211 KRLYPGGKFFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKGPLN 266 (286)
T ss_pred CCCCCccccccccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCChHH
Confidence 34589999999999999999999999999999999999999999999999887654
No 24
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=99.45 E-value=3.7e-14 Score=130.03 Aligned_cols=56 Identities=41% Similarity=0.628 Sum_probs=51.7
Q ss_pred CCCCCCCCcCccccCCCCCHHHHHHhhhhhhhccchhhhhhhhhhhhhhhhccCCCC
Q 024422 76 LDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILN 132 (268)
Q Consensus 76 l~G~~pGd~GfDPlGL~~d~~~~~~~r~aEl~HGR~AMla~~G~~~~e~~~~~G~l~ 132 (268)
.|..+|||+ |||+||++|+++++++|.+|||||||||+|++||++|+++++.|.+.
T Consensus 182 ~d~~yPG~~-FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vTG~GPle 237 (262)
T PLN00025 182 LDPLYPGGS-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 237 (262)
T ss_pred ccCcCCccc-CCccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHH
Confidence 355799999 99999999999999999999999999999999999999999887654
No 25
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=99.45 E-value=7.1e-14 Score=126.98 Aligned_cols=51 Identities=37% Similarity=0.539 Sum_probs=47.0
Q ss_pred CCCCCCCCcccCCCCCCCCChHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhc
Q 024422 190 TDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYT 241 (268)
Q Consensus 190 ~d~~yPGd~gFDPLgl~~~d~e~~~~~k~kELkNGRLAMlAi~G~~~Q~~vT 241 (268)
-|..+|||+|||||||. +|+|+++++|.+||||||+||||++|+++|++++
T Consensus 48 Ldg~~pGd~GFDPlgl~-~~~~~~~~~r~aEl~hGR~AMla~~G~~~~E~~~ 98 (246)
T PLN00100 48 LDGTMAGDYGFDPLRLG-ANPETLPYLQEAELMNGRWAMAATAGILFTDAVG 98 (246)
T ss_pred CCCCCCCCcCCCccccC-CCHHHHHHHHHHHhhcchHHHHHHhhhhHHHHhc
Confidence 35569999999999998 5999999999999999999999999999999875
No 26
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=99.39 E-value=2.3e-13 Score=123.72 Aligned_cols=51 Identities=35% Similarity=0.505 Sum_probs=47.0
Q ss_pred CCCCCCCcccCCCCCCCCChHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhcC
Q 024422 191 DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTG 242 (268)
Q Consensus 191 d~~yPGd~gFDPLgl~~~d~e~~~~~k~kELkNGRLAMlAi~G~~~Q~~vTG 242 (268)
|..+|||+|||||+|. +++++++++|.+||||||.||||++|+++|++++.
T Consensus 58 dg~~pgd~GfDPlgls-~~~~~~~~~r~~ELkHGR~AMLAv~G~i~~E~l~~ 108 (243)
T PLN00099 58 DGSAPGDFGFDPLRLG-EVPENLERYKESELIHCRWAMLAVPGILVPEALGL 108 (243)
T ss_pred CCCCCcccCCCccccc-cCHHHHHHHHHHhccCCcHHHHHHhhHHHHHHhcc
Confidence 5568999999999998 48999999999999999999999999999999753
No 27
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=99.30 E-value=1e-12 Score=111.28 Aligned_cols=50 Identities=46% Similarity=0.725 Sum_probs=46.5
Q ss_pred CCCCCCCCCcCccccCCCCCHHHHHHhhhhhhhccchhhhhhhhhhhhhh
Q 024422 75 WLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPEL 124 (268)
Q Consensus 75 ~l~G~~pGd~GfDPlGL~~d~~~~~~~r~aEl~HGR~AMla~~G~~~~e~ 124 (268)
..++..|||++|||+|+.+|++..+++|.+||+|||+||+|++|+++||.
T Consensus 107 ~~~~~~pG~~~~dplgl~~~~~~~~~~~~~El~NGRlAMla~~g~~~~e~ 156 (156)
T PF00504_consen 107 GKDGRYPGDLGFDPLGLAKDPEEKEFMQLAELKNGRLAMLAFAGFVAQEA 156 (156)
T ss_dssp SSSSSSSSSSSSSTSSTSSSCHSHHCHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred cccccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 56788999999999999889999999999999999999999999999983
No 28
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=99.10 E-value=5.1e-11 Score=105.88 Aligned_cols=46 Identities=33% Similarity=0.474 Sum_probs=39.7
Q ss_pred CCCCCC-------cCccccCCCCCHHHHHHhhhhhhhccchhhhhhhhhhhhhhhhc
Q 024422 78 GSLPGD-------FGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTK 127 (268)
Q Consensus 78 G~~pGd-------~GfDPlGL~~d~~~~~~~r~aEl~HGR~AMla~~G~~~~e~~~~ 127 (268)
+..||| +||||+ |++..+++|.+||||||+||+|++|++++|++.+
T Consensus 142 ~~~pGd~~~g~~d~gfdp~----~~~~~~~~~~~EL~NGRLAMiai~G~~~qe~l~g 194 (202)
T PLN00120 142 GEFVGDFRNGYIDFGWDSF----DEETKLKKRAIELNQGRAAQMGILALMVHEQLGV 194 (202)
T ss_pred CCCCCccCCCCCCCCCCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 578995 455554 7899999999999999999999999999999865
No 29
>PHA02337 putative high light inducible protein
Probab=98.26 E-value=8e-07 Score=57.98 Aligned_cols=28 Identities=36% Similarity=0.243 Sum_probs=25.9
Q ss_pred HHHHhhhhhHHHHHHHHHHhhhhcCCCc
Q 024422 218 TKEIKNGRLAMLAVMGAWFQHIYTGTGP 245 (268)
Q Consensus 218 ~kELkNGRLAMlAi~G~~~Q~~vTG~gP 245 (268)
..|+-||||||+||+..+.-+++||++.
T Consensus 4 ~aE~~NGRlAMiGfv~~~~~e~~tGq~i 31 (35)
T PHA02337 4 EAEIFNGWLAMIGFVAAVGAYATTGQII 31 (35)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhCCCC
Confidence 4699999999999999999999999974
No 30
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=98.12 E-value=1.9e-06 Score=74.80 Aligned_cols=46 Identities=35% Similarity=0.460 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHhhhhc-CCCchhHHHHhhcCCc
Q 024422 212 KVKELRTKEIKNGRLAMLAVMGAWFQHIYT-GTGPIDNLIAHLADPG 257 (268)
Q Consensus 212 ~~~~~k~kELkNGRLAMlAi~G~~~Q~~vT-G~gPl~nL~~hladP~ 257 (268)
..++.|..|+.|||||||||+--++-|++| |+||+.||-..-.-|.
T Consensus 131 ~vrEqK~nE~~NGRLAMLGF~~alitE~lTgGqGiL~Ql~~ETGvPi 177 (214)
T PLN00084 131 QVREQKPYELFNGRLAMLGFAFAIAGDAVTGGMGPLEQFNGETGVPV 177 (214)
T ss_pred HHHhccchhhhhhHHHHHHHHHHHHHHHHhCCcchHHHhccccCCcc
Confidence 456778899999999999999999999999 9999999876655554
No 31
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=97.67 E-value=3.1e-05 Score=70.06 Aligned_cols=35 Identities=31% Similarity=0.472 Sum_probs=32.4
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhhhcCCCchhHHHH
Q 024422 217 RTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIA 251 (268)
Q Consensus 217 k~kELkNGRLAMlAi~G~~~Q~~vTG~gPl~nL~~ 251 (268)
...|+-|||+|||||+..++-+.+||+|.++++..
T Consensus 160 ~~aE~lNGR~AMiGFvaal~~E~~TG~gll~Qlg~ 194 (250)
T PLN00014 160 PEAELLNGRAAMVGFFMAYLVDSLTGVGLVDQMGN 194 (250)
T ss_pred chhHhhhhHHHHHHHHHHHHHHHHcCCcHHHHHhh
Confidence 45799999999999999999999999999999865
No 32
>PHA02337 putative high light inducible protein
Probab=97.47 E-value=6.7e-05 Score=49.01 Aligned_cols=29 Identities=24% Similarity=0.108 Sum_probs=26.2
Q ss_pred hhhhhhccchhhhhhhhhhhhhhhhccCC
Q 024422 102 VQSEIVHCRWAMLGAAGIFIPELLTKLGI 130 (268)
Q Consensus 102 r~aEl~HGR~AMla~~G~~~~e~~~~~G~ 130 (268)
..+|..|||+||++++-.++.|++++.++
T Consensus 3 ~~aE~~NGRlAMiGfv~~~~~e~~tGq~i 31 (35)
T PHA02337 3 PEAEIFNGWLAMIGFVAAVGAYATTGQII 31 (35)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHhCCCC
Confidence 46899999999999999999999987654
No 33
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=96.42 E-value=0.001 Score=60.32 Aligned_cols=32 Identities=25% Similarity=0.418 Sum_probs=28.8
Q ss_pred hhhhhhhccchhhhhhhhhhhhhhhhccCCCC
Q 024422 101 NVQSEIVHCRWAMLGAAGIFIPELLTKLGILN 132 (268)
Q Consensus 101 ~r~aEl~HGR~AMla~~G~~~~e~~~~~G~l~ 132 (268)
+.++|+.|||+||+|++-.++.|++++.|++.
T Consensus 159 l~~aE~lNGR~AMiGFvaal~~E~~TG~gll~ 190 (250)
T PLN00014 159 LPEAELLNGRAAMVGFFMAYLVDSLTGVGLVD 190 (250)
T ss_pred CchhHhhhhHHHHHHHHHHHHHHHHcCCcHHH
Confidence 45799999999999999999999999888754
No 34
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=95.92 E-value=0.0075 Score=52.71 Aligned_cols=39 Identities=28% Similarity=0.320 Sum_probs=34.2
Q ss_pred HHHHHHhhhhhhhccchhhhhhhhhhhhhhhh-ccCCCCC
Q 024422 95 PETLRWNVQSEIVHCRWAMLGAAGIFIPELLT-KLGILNT 133 (268)
Q Consensus 95 ~~~~~~~r~aEl~HGR~AMla~~G~~~~e~~~-~~G~l~~ 133 (268)
+.+.+..+..|+.|||+||++++-.++.|+++ +.|++.+
T Consensus 129 ~~~vrEqK~nE~~NGRLAMLGF~~alitE~lTgGqGiL~Q 168 (214)
T PLN00084 129 DDQVREQKPYELFNGRLAMLGFAFAIAGDAVTGGMGPLEQ 168 (214)
T ss_pred HHHHHhccchhhhhhHHHHHHHHHHHHHHHHhCCcchHHH
Confidence 45677888999999999999999999999999 8887654
No 35
>PLN02449 ferrochelatase
Probab=56.66 E-value=7.8 Score=39.18 Aligned_cols=21 Identities=33% Similarity=0.419 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHhhhhcCCCch
Q 024422 226 LAMLAVMGAWFQHIYTGTGPI 246 (268)
Q Consensus 226 LAMlAi~G~~~Q~~vTG~gPl 246 (268)
+||+||+.+++-+++||.||+
T Consensus 463 ~~~~~~~~~~~~~~~~~~~~~ 483 (485)
T PLN02449 463 AAMLAVLLLLVLEVTSGFGNL 483 (485)
T ss_pred hHHHHHHHHHHHHHHcCCCcC
Confidence 999999999999999999997
No 36
>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]
Probab=42.45 E-value=19 Score=35.04 Aligned_cols=51 Identities=25% Similarity=0.296 Sum_probs=35.9
Q ss_pred CCcCccc-----cCCCCCHHHHHHhhhhhhhccc------hhhhhhhhhhhhhhhhccCCCCC
Q 024422 82 GDFGFDP-----LGLGSDPETLRWNVQSEIVHCR------WAMLGAAGIFIPELLTKLGILNT 133 (268)
Q Consensus 82 Gd~GfDP-----lGL~~d~~~~~~~r~aEl~HGR------~AMla~~G~~~~e~~~~~G~l~~ 133 (268)
.||||-= --.-+|.-.-+|||.-||--|. +.|.| +||++.|++++..++++
T Consensus 143 CDFGFAR~L~~pgd~YTDYVATRWYRaPELLvGDtqYG~pVDiWA-iGCv~aEl~~G~pL~PG 204 (396)
T KOG0593|consen 143 CDFGFARTLSAPGDNYTDYVATRWYRAPELLVGDTQYGKPVDIWA-IGCVFAELLTGEPLWPG 204 (396)
T ss_pred ccchhhHhhcCCcchhhhhhhhhhccChhhhcccCcCCCcccchh-hhHHHHHHhcCCcCCCC
Confidence 5777732 1122466777999999999995 55554 69999999987655444
No 37
>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]
Probab=24.31 E-value=48 Score=31.61 Aligned_cols=38 Identities=24% Similarity=0.397 Sum_probs=29.6
Q ss_pred HHHHhhhhhhhccc------hhhhhhhhhhhhhhhhccCCCCCCc
Q 024422 97 TLRWNVQSEIVHCR------WAMLGAAGIFIPELLTKLGILNTPS 135 (268)
Q Consensus 97 ~~~~~r~aEl~HGR------~AMla~~G~~~~e~~~~~G~l~~~~ 135 (268)
--+|||.-||--|- +.|.| +||++.|++....++++.+
T Consensus 163 ~TRWYRAPELLfGsr~Yg~~VDmWa-vGCI~AELllr~P~fpG~s 206 (318)
T KOG0659|consen 163 VTRWYRAPELLFGSRQYGTGVDMWA-VGCIFAELLLRVPFFPGDS 206 (318)
T ss_pred eeeeccChHHhccchhcCCcchhhh-HHHHHHHHHccCCCCCCCc
Confidence 35899999988775 78876 6999999988766665543
No 38
>PHA00649 hypothetical protein
Probab=22.69 E-value=1.5e+02 Score=22.54 Aligned_cols=35 Identities=34% Similarity=0.553 Sum_probs=20.5
Q ss_pred CCCCCCChHHHHHHHHHHHhhhhh-------HHHHHHHHHHhh
Q 024422 203 LGWGSGSPEKVKELRTKEIKNGRL-------AMLAVMGAWFQH 238 (268)
Q Consensus 203 Lgl~~~d~e~~~~~k~kELkNGRL-------AMlAi~G~~~Q~ 238 (268)
||...++|++.++.|. .+.+||- .||++.|+++..
T Consensus 26 LGVD~~~P~~VEEFr~-D~~~~Rr~RKA~D~G~L~~VGL~~~~ 67 (83)
T PHA00649 26 LGVDVDVPEQVEEFRE-DLRFGRRMRKAADHGFLALVGLVAVA 67 (83)
T ss_pred HcCCCCCHHHHHHHHH-HHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 4444467877776663 4555542 357777766543
No 39
>PHA00003 B internal scaffolding protein
Probab=22.18 E-value=1.2e+02 Score=24.87 Aligned_cols=35 Identities=20% Similarity=0.333 Sum_probs=25.5
Q ss_pred CCCCCCCcccCCCCCCCCChHHHHHHHHHHHhhhhhHHH
Q 024422 191 DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAML 229 (268)
Q Consensus 191 d~~yPGd~gFDPLgl~~~d~e~~~~~k~kELkNGRLAMl 229 (268)
++.+|-++-|||.. ..-+.++.|..||.+||-+.-
T Consensus 41 ~~t~p~gLRrdpvq----~d~EaERqkr~~iEagk~~c~ 75 (120)
T PHA00003 41 NGTDPSGLRRDPVQ----QDLEAERQKRADIEAGKAICA 75 (120)
T ss_pred CCCCccccccCccc----chHHHHHHHHHHHHHHHHHHH
Confidence 44588888899863 223456788889999998653
No 40
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=20.16 E-value=94 Score=31.63 Aligned_cols=8 Identities=63% Similarity=1.032 Sum_probs=6.7
Q ss_pred cCccccCC
Q 024422 84 FGFDPLGL 91 (268)
Q Consensus 84 ~GfDPlGL 91 (268)
+||||-+|
T Consensus 71 ~gFDpeaL 78 (630)
T KOG0742|consen 71 SGFDPEAL 78 (630)
T ss_pred cCCChHHH
Confidence 58999887
Done!