Query 024422
Match_columns 268
No_of_seqs 238 out of 1260
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 07:58:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024422.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024422hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wsc_2 LHCA2, type II chloroph 100.0 1E-74 3.5E-79 528.5 3.6 265 1-268 1-269 (269)
2 2wsc_4 Chlorophyll A-B binding 100.0 9.5E-68 3.2E-72 479.0 1.4 209 52-267 41-250 (251)
3 2wsc_3 LHCA3, type II chloroph 100.0 4.5E-67 1.5E-71 479.7 4.8 219 48-268 41-276 (276)
4 2bhw_A Chlorophyll A-B binding 100.0 9.1E-63 3.1E-67 442.3 19.7 202 49-266 7-226 (232)
5 3pl9_A Chlorophyll A-B binding 100.0 8E-64 2.7E-68 449.7 11.4 183 58-265 6-242 (243)
6 2wsc_1 AT3G54890, LHCA1; photo 100.0 7.7E-58 2.6E-62 411.8 4.8 188 61-267 43-239 (241)
7 2bhw_A Chlorophyll A-B binding 99.4 7.5E-14 2.6E-18 125.0 6.3 51 191-242 37-87 (232)
8 2wsc_4 Chlorophyll A-B binding 99.4 8.1E-15 2.8E-19 132.6 -0.6 53 193-246 69-121 (251)
9 3pl9_A Chlorophyll A-B binding 99.4 2.5E-14 8.5E-19 128.6 2.6 52 79-131 172-223 (243)
10 2wsc_3 LHCA3, type II chloroph 99.4 2.4E-14 8.4E-19 131.0 1.6 58 76-133 199-256 (276)
11 2wsc_2 LHCA2, type II chloroph 99.4 5.2E-14 1.8E-18 128.4 1.8 56 77-132 192-248 (269)
12 2wsc_1 AT3G54890, LHCA1; photo 99.3 5.5E-13 1.9E-17 119.9 1.2 55 77-132 164-219 (241)
13 2dpr_A CON-T(K7GLA); conantoxi 21.3 43 0.0015 19.3 1.4 15 95-109 6-20 (26)
No 1
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=100.00 E-value=1e-74 Score=528.49 Aligned_cols=265 Identities=82% Similarity=1.428 Sum_probs=163.4
Q ss_pred CccccccchhhhccCCc--cccccccccccccccccCccccccccCCCCCc-cccccccccCCCCCCCCCCCCCCCCCCC
Q 024422 1 MASVCASPAVAAISSPS--SQKSRSVAGATKASFLGGKKLKLRKNGATAGT-RSVSVSAAAADPNRPLWFPGSTPPEWLD 77 (268)
Q Consensus 1 ~~~~~~s~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~r~~~~p~~~~P~~l~ 77 (268)
||++|+|+++++++.+. .++.....++.++ |+ +++++.++.++...+ ++.+++.++|++||++|||+.++|+|||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~wlpg~~~P~~L~ 78 (269)
T 2wsc_2 1 MASACASSAIAAVAISTPSSQKNGSPSGTSKA-FL-GRKLKVNSSTASPSRVRSTSTVCTVAEPDRPLWFPGSTPPPWLD 78 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CchhHhhHHHHHhhcCccccccccccccchhh-cc-ccccccccccccccccCCcceeecccCCCcccccCCCCCccccc
Confidence 78999998877764433 3445566777777 77 666665554442222 4555677789999999999999999999
Q ss_pred CCCCCCcCccccCCCCCHHHHHHhhhhhhhccchhhhhhhhhhhhhhhhccCCCCCCcccccCccccccchhhHHHHHHH
Q 024422 78 GSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMI 157 (268)
Q Consensus 78 G~~pGd~GfDPlGL~~d~~~~~~~r~aEl~HGR~AMla~~G~~~~e~~~~~G~l~~~~w~~aG~~~~~~~~~~l~~~qi~ 157 (268)
|++|||||||||||++|+|+++|||++|||||||||||++|+++||+++..|++..+.|+++|...+|.++++++++|++
T Consensus 79 G~~pGD~GfDPlGL~~d~e~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~G~~~~p~w~~aG~~~~~~~~~~l~~~qi~ 158 (269)
T 2wsc_2 79 GSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILNTPSWYTAGEQEYFTDTTTLFIVELV 158 (269)
T ss_dssp ---------------CCCSCCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCTTSSSCCCCCSTTSSSSCCCTTSHHHHHTT
T ss_pred CcCCCCCCCCccccCCCHHHHHHHHHHHHhcchHHHHHHHHhHhHHhhccCCcccCccccccchhhhhcchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999898877789999988889888899999999
Q ss_pred HHHHHHhhhhhcccCCcccCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCChHHHHHHHHHHHhhhhhHHHHHHHHHHh
Q 024422 158 FIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQ 237 (268)
Q Consensus 158 l~g~~E~~r~~~~~~~G~~~~~~~f~~~~~~~~d~~yPGd~gFDPLgl~~~d~e~~~~~k~kELkNGRLAMlAi~G~~~Q 237 (268)
+||++|.+|++++.+||+++.++.|........|.+||||++||||||.++|+|+++++|.+||||||||||||+|+++|
T Consensus 159 liG~~E~~r~~~~~~pG~~g~~p~f~~~~~~~~d~~~PG~~~fDPlgl~~~~~e~~~~~~~~Ei~nGRlAMla~~g~~~~ 238 (269)
T 2wsc_2 159 FIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQ 238 (269)
T ss_dssp HHHHHHHHHHTTSSCCCCCSSSCCSSSCCSSTTSCSCTTCSSCCCSSSSSSCCCSCTTSTTTTHHHHHHHHTTTSSSCHH
T ss_pred HHHHHHHHHHhccccCCccccccccccccccccccCCCCCcccCccccCcccHHHHHHHHHhhcccchHHHHHHHHHHHH
Confidence 99999999999999999999888887655455677899999999999987789999999999999999999999999999
Q ss_pred hhhcCCCchhHHH-HhhcCCccccccccccCC
Q 024422 238 HIYTGTGPIDNLI-AHLADPGHATVFAAFTPK 268 (268)
Q Consensus 238 ~~vTG~gPl~nL~-~hladP~~~n~~~~~~~~ 268 (268)
+++||+||++||. +||+|| ||||+++++.|
T Consensus 239 ~~~tg~g~l~~l~~~HladP-~~n~~~~~~~~ 269 (269)
T 2wsc_2 239 HIYTGTGPIDNLFAAHLADP-HATIFAAFTPK 269 (269)
T ss_dssp HHHTTTCSSCCCSCCCCCCS-CCCCCSSSCCC
T ss_pred HHhcCCChHHHHHHHHhcCc-ccchhhhccCC
Confidence 9999999999999 999999 99999999875
No 2
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=100.00 E-value=9.5e-68 Score=479.04 Aligned_cols=209 Identities=52% Similarity=0.984 Sum_probs=153.8
Q ss_pred cccccccCCC-CCCCCCCCCCCCCCCCCCCCCCcCccccCCCCCHHHHHHhhhhhhhccchhhhhhhhhhhhhhhhccCC
Q 024422 52 VSVSAAAADP-NRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGI 130 (268)
Q Consensus 52 ~~~~~~~~~~-~r~~~~p~~~~P~~l~G~~pGd~GfDPlGL~~d~~~~~~~r~aEl~HGR~AMla~~G~~~~e~~~~~G~ 130 (268)
.+++..+|++ ||++|||+.++|+||||++|||||||||||++|+|+++|+|++|||||||||||++|+++||++++.|+
T Consensus 41 ~~~~~~~~~~~~r~~~~pg~~~p~~l~g~~pGd~gfDPlGl~~d~e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~ 120 (251)
T 2wsc_4 41 CSPSASFKVEAKKGEWLPGLASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGI 120 (251)
T ss_dssp ----------------------------------------CCCSCCCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSCS
T ss_pred ccccccccCcchhhhccCCCCCccccCCCcCCCCCCCccccCCChHHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCc
Confidence 3445568998 899999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCcccccCccccccchhhHHHHHHHHHHHHHhhhhhcccCCcccCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCh
Q 024422 131 LNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSP 210 (268)
Q Consensus 131 l~~~~w~~aG~~~~~~~~~~l~~~qi~l~g~~E~~r~~~~~~~G~~~~~~~f~~~~~~~~d~~yPGd~gFDPLgl~~~d~ 210 (268)
+..+.|+++|..+||.++++++++|+++||++|.+|++++.+||+++.+|.|...+.+..|.+||||+ ||||++.+
T Consensus 121 ~~~p~w~~aG~~~~~~~~~~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~f~~~~~~~~d~~yPGg~-FDPLgl~~--- 196 (251)
T 2wsc_4 121 INVPKWYAAGKEEYFASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGI-FNPLNFAP--- 196 (251)
T ss_dssp SCCCCCSCCCSSSCSSCSSCTTTTHHHHHHTTTHHHHHHHSSCCCTTCCSSSCSSSSCCHHHHSSCCT-TCCCCCCS---
T ss_pred cCCccccccchHhhhccchHHHHHHHHHHHHHHHHHhhcccCCCcccccccccccccccccccCCCCc-cCccchhH---
Confidence 87778999998888888888889999999999999999999999998888887655544456799999 99999973
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHhhhhcCCCchhHHHHhhcCCccccccccccC
Q 024422 211 EKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFTP 267 (268)
Q Consensus 211 e~~~~~k~kELkNGRLAMlAi~G~~~Q~~vTG~gPl~nL~~hladP~~~n~~~~~~~ 267 (268)
++++|+|||||||| ||||+||++|+++||++|++||.+||+||+||||++++..
T Consensus 197 --~~~~k~kELkNGRL-MlAilGf~vQe~vTG~gPl~nL~~hladP~~~n~~~~~~~ 250 (251)
T 2wsc_4 197 --TLEAKEKEIANGRL-MLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQTLGG 250 (251)
T ss_dssp --SSSCTTHHHHHHHT-TTTHHHHHHHHTTSCCCCCCCTTTTTTCCCCCCSCC----
T ss_pred --HHHHHHHHHhcchh-HHHHHHHHHHHHhcCccHHHHHHHHccChhhhhhhhhhcC
Confidence 67899999999999 9999999999999999999999999999999999999764
No 3
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=100.00 E-value=4.5e-67 Score=479.66 Aligned_cols=219 Identities=43% Similarity=0.856 Sum_probs=130.6
Q ss_pred CccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCcCccccCCCCCHHHH------HHhhhhhhhccchhhhhhhhhhh
Q 024422 48 GTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETL------RWNVQSEIVHCRWAMLGAAGIFI 121 (268)
Q Consensus 48 ~~~~~~~~~~~~~~~r~~~~p~~~~P~~l~G~~pGd~GfDPlGL~~d~~~~------~~~r~aEl~HGR~AMla~~G~~~ 121 (268)
.+|++...+++|++||++|||+.++|+||||++||||||||||| +|++++ +|+|++||+||||||||++|+++
T Consensus 41 ~~~~~~~~~~~~g~~R~~wlP~~~~P~~L~G~~pGD~GfDPlGl-~d~~~~~~~~~~~~~r~aEl~hGR~AMLa~~G~l~ 119 (276)
T 2wsc_3 41 LVKAAATPPVKQGSDRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIA 119 (276)
T ss_dssp ---------------------------------------------CCCCCCCCSSSTTHHHHHHHHHHTTSCCTTTSTTS
T ss_pred eEecccCCccccCCCccccCCCCCCcccccCcCCCccCCCcccc-CChHhhcchhhHHHHHHHHhhcccchhhhHHHHHH
Confidence 44444445567999999999999999999999999999999999 789999 99999999999999999999999
Q ss_pred hhhhhccCCCC--CCc-ccc------cCccccccchhhHHHHHHHHHHHHHhhhhhcccCCcccCCCCCCCCCC--CCCC
Q 024422 122 PELLTKLGILN--TPS-WYT------AGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNK--LTGT 190 (268)
Q Consensus 122 ~e~~~~~G~l~--~~~-w~~------aG~~~~~~~~~~l~~~qi~l~g~~E~~r~~~~~~~G~~~~~~~f~~~~--~~~~ 190 (268)
+|++++.|++. .+. |++ +|..+||..+.+++++|+++||++|.+|++++.+||+++.++.|+.++ ....
T Consensus 120 ~E~~~~~g~~~~~~p~~w~~~g~ip~aG~~~~~~~~~~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~~g~~~~~~~~~ 199 (276)
T 2wsc_3 120 PEILGKAGLIPQETALPWFRTGFIPPAGTYNYWADSYTLFVFEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSG 199 (276)
T ss_dssp CSSCSSCCCCCCSSCCSSSSCCCC-----CCCSCCCCSTTHHHHHHTHHHHTTTTTGGGSCCCCCCCCSSCSCCCCCCCS
T ss_pred HHHhcccccccccCcchhhhhhcccchhHHHHhccchHHHHHHHHHHHHHHHhhhcccccCCcccccccccccccccccc
Confidence 99999888763 233 888 455567888888999999999999999999999999998888774432 2345
Q ss_pred CCCCCCCcccCCCCCCCCChHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhcCCCchhHHHHhhcCCccccccccccCC
Q 024422 191 DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFTPK 268 (268)
Q Consensus 191 d~~yPGd~gFDPLgl~~~d~e~~~~~k~kELkNGRLAMlAi~G~~~Q~~vTG~gPl~nL~~hladP~~~n~~~~~~~~ 268 (268)
|..||||++||||||.+ |+++++++|.+||||||||||||+|+++|+++||+||++||.+||+||+||||++++.+|
T Consensus 200 d~~yPG~~~fDPlgl~~-~~~~~~~~r~~Ei~nGRlAMla~~g~~~~~~~tg~g~~~~l~~HladP~~~n~~~~~~~~ 276 (276)
T 2wsc_3 200 EPAYPGGPFFNPLGFGK-DEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDHLTDPVHNNILTSLKFH 276 (276)
T ss_dssp SCTTTSSSSCCCCCCSS-SCC-----CCSHHHHHHHHHHHHHHHHSSCCCCSSCCSCC--------------------
T ss_pred cccCCCcccccchhccc-ccHHHHHHHHhhhcccchHHHHHHHHHHHHHhcCCChHHHHHHhccCcccchhhhhccCC
Confidence 66899999999999985 777799999999999999999999999999999999999999999999999999999875
No 4
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=100.00 E-value=9.1e-63 Score=442.26 Aligned_cols=202 Identities=41% Similarity=0.769 Sum_probs=172.2
Q ss_pred ccccccccccCCCCCCCCCCC--CCCCCCCCCCCCCCcCccccCCCCCHHHHHHhhhhhhhccchhhhhhhhhhhhhhhh
Q 024422 49 TRSVSVSAAAADPNRPLWFPG--STPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLT 126 (268)
Q Consensus 49 ~~~~~~~~~~~~~~r~~~~p~--~~~P~~l~G~~pGd~GfDPlGL~~d~~~~~~~r~aEl~HGR~AMla~~G~~~~e~~~ 126 (268)
.|..++.+.||++||++|++. .++|+||||++|||||||||||++|+++++||||+|||||||||||++|+++||+++
T Consensus 7 ~~~~~~~~~~~~~~r~~~l~~~~~~~P~~LdG~~pGD~GFDPLGLs~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~ 86 (232)
T 2bhw_A 7 KKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLS 86 (232)
T ss_dssp ---CCTTCTTSSTTCCCTTGGGCCSCCTTCCSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccCCcccCCCcccccCccccCCccccCCcCCCCCCCCCCcCCCCHHHHHHHHHHHHhccchHHHhhhhhhhHHHhc
Confidence 344455678999999999974 599999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC-CCCCcccccCcc-------cccc--------chhhHHHHHHHHHHHHHhhhhhcccCCcccCCCCCCCCCCCCCC
Q 024422 127 KLGI-LNTPSWYTAGEL-------EYFT--------DTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT 190 (268)
Q Consensus 127 ~~G~-l~~~~w~~aG~~-------~~~~--------~~~~l~~~qi~l~g~~E~~r~~~~~~~G~~~~~~~f~~~~~~~~ 190 (268)
..|+ +..+.|+++|.. .|+. ....++++|+++||++|.+|+++ |..+ +..
T Consensus 87 ~~G~~~~~~~w~~ag~~~~~~~~~~~~~~P~~~~~q~i~~~~~~q~~~~g~~E~~r~~~----g~~g----------~~~ 152 (232)
T 2bhw_A 87 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG----GPLG----------EVV 152 (232)
T ss_dssp TTTCCCSCCSGGGSGGGGGSTTCEEGGGCTTSEEECCHHHHHHHHHHHHHHHHHHHHHE----ETTE----------ECS
T ss_pred cCCcCCcccccccccchhccccchhcccCcchhhHHHHHHHHHHHHHHHHHHHHHhhcc----Cccc----------ccc
Confidence 8886 666779887642 1221 12356678999999999999865 1111 113
Q ss_pred CCCCCCCcccCCCCCCCCChHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhcCCCchhHHHHhhcCCcccccccccc
Q 024422 191 DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFT 266 (268)
Q Consensus 191 d~~yPGd~gFDPLgl~~~d~e~~~~~k~kELkNGRLAMlAi~G~~~Q~~vTG~gPl~nL~~hladP~~~n~~~~~~ 266 (268)
|..||||+ ||||||. +|+|+++++|.+||||||||||||+|+++|+++||++|++||.+|++||+||||++++.
T Consensus 153 d~~~Pg~~-fdPlgl~-~~~~~~~~~~~~E~~nGRlAM~~~~g~~~~~~~tg~g~~~~l~~~~adP~~~n~~~~~~ 226 (232)
T 2bhw_A 153 DPLYPGGS-FDPLGLA-DDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYAT 226 (232)
T ss_dssp SSSCCCTT-SCTTCTT-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSHHHHHHHHHCTTTSSGGGGTT
T ss_pred cccCCCcc-cccchhc-cchHHHHHHHHhhhhccchHHHHHHHHHHHHHhcCCChHHHHHHHhcChHHhHHHHHHH
Confidence 45699999 9999998 59999999999999999999999999999999999999999999999999999999864
No 5
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=100.00 E-value=8e-64 Score=449.71 Aligned_cols=183 Identities=45% Similarity=0.823 Sum_probs=123.9
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCcCccccCCCCCHHH----------------------------------------
Q 024422 58 AADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPET---------------------------------------- 97 (268)
Q Consensus 58 ~~~~~r~~~~p~~~~P~~l~G~~pGd~GfDPlGL~~d~~~---------------------------------------- 97 (268)
+++++|++|||+.++|+||||++|||||||||||++|||.
T Consensus 6 ~~~~~r~~w~pg~~~P~~LdGslpGD~GfDPlgL~~~pe~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 85 (243)
T 3pl9_A 6 GFSTDRPLWYPGAKAPEYLDGSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNLAGDIIGTRTESADVKSTSLQPYSE 85 (243)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCcccccccCCCCCcccccCCCCCcCCCCccccCCChhhhccccccchhhhhccccccccccccccccccccccccccc
Confidence 5667999999999999999999999999999999999873
Q ss_pred ---HHHhhhhhhhccchhhhhhhhhhhhhhhhccCCCCCCcccccCcc------cccc-----chhhHHHHHHHHHHHHH
Q 024422 98 ---LRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGEL------EYFT-----DTTTLFIVEMIFIGWAE 163 (268)
Q Consensus 98 ---~~~~r~aEl~HGR~AMla~~G~~~~e~~~~~G~l~~~~w~~aG~~------~~~~-----~~~~l~~~qi~l~g~~E 163 (268)
++|||++|||||||||||++||++||++++. .|+++|.. .|+. +.++++++|+++||++|
T Consensus 86 ~~~l~r~ReaELkHGRwAMLAvlG~lvpE~l~g~------~W~~aG~~~~~~g~~y~g~p~~~~i~~l~~~qv~lmG~~E 159 (243)
T 3pl9_A 86 VFGLQRFRECELIHGRWAMLATLGALTVEGLTGI------TWQDAGKVELIEGSSYLGQPLPFSMTTLIWIEVLVIGYIE 159 (243)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC------CTTTHHHHHHHSCEEETTEEECCCHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHhhhhcchhHHHHHHHHHhHHhhcCc------ccccccccccccccccccCccchhhHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999998632 47766532 2332 23478899999999999
Q ss_pred hhhhhcccCCcccCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCChHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhcCC
Q 024422 164 GRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGT 243 (268)
Q Consensus 164 ~~r~~~~~~~G~~~~~~~f~~~~~~~~d~~yPGd~gFDPLgl~~~d~e~~~~~k~kELkNGRLAMlAi~G~~~Q~~vTG~ 243 (268)
.+|++++. ..+..||||+ ||||||. +|+|+++++|.+||||||||||||+|+++|+++||+
T Consensus 160 ~~R~~~~~-----------------~~~~~~PG~~-FDPLGl~-~d~e~~~~~r~~ElknGRlAMla~~g~~~q~~vtG~ 220 (243)
T 3pl9_A 160 FQRNAELD-----------------TEKRLYPGGT-FDPLGLA-SDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGK 220 (243)
T ss_dssp HHHHSCCC-----------------TTTTTCCCGG-GCTTCTT-CSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHhhcccC-----------------CccccCCCcc-hhhcccc-ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCC
Confidence 99987520 1123599999 9999999 499999999999999999999999999999999999
Q ss_pred CchhHHHHhhcCCccccccccc
Q 024422 244 GPIDNLIAHLADPGHATVFAAF 265 (268)
Q Consensus 244 gPl~nL~~hladP~~~n~~~~~ 265 (268)
||++||.+||+||+||||++++
T Consensus 221 Gpl~~l~~HladP~~~ni~~~~ 242 (243)
T 3pl9_A 221 GPLNNWVTHLSDPLHTTILDRF 242 (243)
T ss_dssp CHHHHHHHHHHCSGGGSTTTTT
T ss_pred ChHHHHHHHhcCcchhhhhhhc
Confidence 9999999999999999999987
No 6
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=100.00 E-value=7.7e-58 Score=411.78 Aligned_cols=188 Identities=45% Similarity=0.865 Sum_probs=132.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCcCccccCCCCCHHHHHHhhhhhhhccchhhhhhhhhhhhhhhhccCCCCCCccc--c
Q 024422 61 PNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWY--T 138 (268)
Q Consensus 61 ~~r~~~~p~~~~P~~l~G~~pGd~GfDPlGL~~d~~~~~~~r~aEl~HGR~AMla~~G~~~~e~~~~~G~l~~~~w~--~ 138 (268)
..|++|+|+.++|+||||++||||||||+||++|+++++|||++|||||||||||++|+++||+++..++.....|. .
T Consensus 43 sm~~~w~P~~~~P~~L~G~~pgd~gfDPlgl~~~~~~~~~~r~~El~hgR~AMla~~G~~~~e~~~~~~~~~a~~~~~~~ 122 (241)
T 2wsc_1 43 RMAAHWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAALP 122 (241)
T ss_dssp ------------------CTTSSCCCSSTTTTTTTTHHHHSHHHHHHHHHHHTTTSTTSSSTTCCCCC-----CCCCSCS
T ss_pred ccccccCCCCCCcccccCCCCCcCCcCccccCCCHHHHHHHHHHHHhhchhHHhhhhcccchhhccCCccccccchhccC
Confidence 35778999999999999999999999999999999999999999999999999999999999997654333222232 1
Q ss_pred cCcccc------ccchhhHHHHHHHHHHHHHhhhhhcccCCcccCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCChHH
Q 024422 139 AGELEY------FTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEK 212 (268)
Q Consensus 139 aG~~~~------~~~~~~l~~~qi~l~g~~E~~r~~~~~~~G~~~~~~~f~~~~~~~~d~~yPGd~gFDPLgl~~~d~e~ 212 (268)
.|...| |...++++++|+++||++|.+|+.+. + ..+..||||. ||||||. +|+|+
T Consensus 123 ~g~a~~~~~~~~~~~~~~i~~iq~l~ig~~E~~r~~~~--------~---------~~~~~yPgg~-fDPlgl~-~~~~~ 183 (241)
T 2wsc_1 123 GGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEK--------D---------PEKKKYPGGA-FDPLGYS-KDPKK 183 (241)
T ss_dssp SCSSCCSSSCSSSSSHHHHHHHHHHHTHHHHHHHTSCC--------S---------SCCSSSCSCC-SCSSSCS-CSSSS
T ss_pred CcchhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHhcc--------C---------CCCCCCCCCc-ccccccc-cchhH
Confidence 222222 34456788899999999999886420 1 1234699995 9999998 58899
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhh-hhcCCCchhHHHHhhcCCccccccccccC
Q 024422 213 VKELRTKEIKNGRLAMLAVMGAWFQH-IYTGTGPIDNLIAHLADPGHATVFAAFTP 267 (268)
Q Consensus 213 ~~~~k~kELkNGRLAMlAi~G~~~Q~-~vTG~gPl~nL~~hladP~~~n~~~~~~~ 267 (268)
++++|.+|||||||||||++|+++|+ ++||+||++||.+||+||+||||++++..
T Consensus 184 ~~~~r~~E~~nGRlAM~a~~g~~~~~~~~tG~gpl~~l~~h~adP~~~n~~~~~~~ 239 (241)
T 2wsc_1 184 LEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIVIP 239 (241)
T ss_dssp CCCSCTTHHHHHHHHHHHHHSGGGGGSSSCCSCCCCCSSCSCCCSCC---------
T ss_pred HHHHHHhhcccccHHHHHHHHHHHhhhhcCCCchHHHHHHHhcCccccceeeeecc
Confidence 99999999999999999999999999 68999999999999999999999998754
No 7
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=99.44 E-value=7.5e-14 Score=125.01 Aligned_cols=51 Identities=27% Similarity=0.510 Sum_probs=47.0
Q ss_pred CCCCCCCcccCCCCCCCCChHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhcC
Q 024422 191 DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTG 242 (268)
Q Consensus 191 d~~yPGd~gFDPLgl~~~d~e~~~~~k~kELkNGRLAMlAi~G~~~Q~~vTG 242 (268)
|..+|||++||||||+ +|+|.++++|..||||||+||||++|+++|++++.
T Consensus 37 dG~~pGD~GFDPLGLs-~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~~ 87 (232)
T 2bhw_A 37 TGEFPGDYGWDTAGLS-ADPETFSKNRELEVIHSRWAMLGALGSVFPELLSR 87 (232)
T ss_dssp CSCSTTCCSCCTTCTT-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcCCCCCCCCCCcCC-CCHHHHHHHHHHHHhccchHHHhhhhhhhHHHhcc
Confidence 3458999999999998 59999999999999999999999999999998764
No 8
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=99.43 E-value=8.1e-15 Score=132.61 Aligned_cols=53 Identities=40% Similarity=0.678 Sum_probs=38.9
Q ss_pred CCCCCcccCCCCCCCCChHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhcCCCch
Q 024422 193 GYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI 246 (268)
Q Consensus 193 ~yPGd~gFDPLgl~~~d~e~~~~~k~kELkNGRLAMlAi~G~~~Q~~vTG~gPl 246 (268)
.+|||++||||||. +|+|+++++|.+||||||+||||++|+++|+++|+.|++
T Consensus 69 ~~pGd~gfDPlGl~-~d~e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~~ 121 (251)
T 2wsc_4 69 SLPGDNGFDPLGLA-EDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGII 121 (251)
T ss_dssp ------------CC-CSCCCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSCSS
T ss_pred CcCCCCCCCccccC-CChHHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcc
Confidence 58999999999998 599999999999999999999999999999999998866
No 9
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=99.43 E-value=2.5e-14 Score=128.58 Aligned_cols=52 Identities=44% Similarity=0.622 Sum_probs=49.1
Q ss_pred CCCCCcCccccCCCCCHHHHHHhhhhhhhccchhhhhhhhhhhhhhhhccCCC
Q 024422 79 SLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGIL 131 (268)
Q Consensus 79 ~~pGd~GfDPlGL~~d~~~~~~~r~aEl~HGR~AMla~~G~~~~e~~~~~G~l 131 (268)
.+|||+ |||+||++|+++++++|.+||||||+||+|++|+++||++++.|.+
T Consensus 172 ~~PG~~-FDPLGl~~d~e~~~~~r~~ElknGRlAMla~~g~~~q~~vtG~Gpl 223 (243)
T 3pl9_A 172 LYPGGT-FDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKGPL 223 (243)
T ss_dssp TCCCGG-GCTTCTTCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHH
T ss_pred cCCCcc-hhhccccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCChH
Confidence 589999 9999999999999999999999999999999999999999987754
No 10
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=99.42 E-value=2.4e-14 Score=130.97 Aligned_cols=58 Identities=33% Similarity=0.511 Sum_probs=47.8
Q ss_pred CCCCCCCCcCccccCCCCCHHHHHHhhhhhhhccchhhhhhhhhhhhhhhhccCCCCC
Q 024422 76 LDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNT 133 (268)
Q Consensus 76 l~G~~pGd~GfDPlGL~~d~~~~~~~r~aEl~HGR~AMla~~G~~~~e~~~~~G~l~~ 133 (268)
.|...|||++|||+||++|+++++++|++||||||+||||++|+++||++++.|++.+
T Consensus 199 ~d~~yPG~~~fDPlgl~~~~~~~~~~r~~Ei~nGRlAMla~~g~~~~~~~tg~g~~~~ 256 (276)
T 2wsc_3 199 GEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQN 256 (276)
T ss_dssp SSCTTTSSSSCCCCCCSSSCC-----CCSHHHHHHHHHHHHHHHHSSCCCCSSCCSCC
T ss_pred ccccCCCcccccchhcccccHHHHHHHHhhhcccchHHHHHHHHHHHHHhcCCChHHH
Confidence 3456899999999999988888999999999999999999999999999998887653
No 11
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=99.39 E-value=5.2e-14 Score=128.37 Aligned_cols=56 Identities=38% Similarity=0.606 Sum_probs=51.3
Q ss_pred CCCCCCCcCccccCCCC-CHHHHHHhhhhhhhccchhhhhhhhhhhhhhhhccCCCC
Q 024422 77 DGSLPGDFGFDPLGLGS-DPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILN 132 (268)
Q Consensus 77 ~G~~pGd~GfDPlGL~~-d~~~~~~~r~aEl~HGR~AMla~~G~~~~e~~~~~G~l~ 132 (268)
|..+|||++|||+||.+ |+++++++|.+||+|||+||+|++|+++||++++.|++.
T Consensus 192 d~~~PG~~~fDPlgl~~~~~e~~~~~~~~Ei~nGRlAMla~~g~~~~~~~tg~g~l~ 248 (269)
T 2wsc_2 192 DVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPID 248 (269)
T ss_dssp SCSCTTCSSCCCSSSSSSCCCSCTTSTTTTHHHHHHHHTTTSSSCHHHHHTTTCSSC
T ss_pred ccCCCCCcccCccccCcccHHHHHHHHHhhcccchHHHHHHHHHHHHHHhcCCChHH
Confidence 44689999999999974 788899999999999999999999999999999988764
No 12
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=99.27 E-value=5.5e-13 Score=119.95 Aligned_cols=55 Identities=33% Similarity=0.520 Sum_probs=49.3
Q ss_pred CCCCCCCcCccccCCCCCHHHHHHhhhhhhhccchhhhhhhhhhhhh-hhhccCCCC
Q 024422 77 DGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPE-LLTKLGILN 132 (268)
Q Consensus 77 ~G~~pGd~GfDPlGL~~d~~~~~~~r~aEl~HGR~AMla~~G~~~~e-~~~~~G~l~ 132 (268)
++.+||| +|||+||.+|+++++++|.+||||||+||+|++|+++|| ++++.|++.
T Consensus 164 ~~~yPgg-~fDPlgl~~~~~~~~~~r~~E~~nGRlAM~a~~g~~~~~~~~tG~gpl~ 219 (241)
T 2wsc_1 164 KKKYPGG-AFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 219 (241)
T ss_dssp CSSSCSC-CSCSSSCSCSSSSCCCSCTTHHHHHHHHHHHHHSGGGGGSSSCCSCCCC
T ss_pred CCCCCCC-cccccccccchhHHHHHHHhhcccccHHHHHHHHHHHhhhhcCCCchHH
Confidence 4568999 599999999999999999999999999999999999999 467777654
No 13
>2dpr_A CON-T(K7GLA); conantoxin, nmdar antagonist, GLA-containing, metal B protein; HET: CGU; 1.70A {Synthetic} PDB: 1ont_A*
Probab=21.29 E-value=43 Score=19.26 Aligned_cols=15 Identities=20% Similarity=0.118 Sum_probs=12.0
Q ss_pred HHHHHHhhhhhhhcc
Q 024422 95 PETLRWNVQSEIVHC 109 (268)
Q Consensus 95 ~~~~~~~r~aEl~HG 109 (268)
.|.+..+|++|+|.-
T Consensus 6 qemlenlreaevkkn 20 (26)
T 2dpr_A 6 QEMLENLREAEVKKN 20 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 467889999999853
Done!