Query 024424
Match_columns 268
No_of_seqs 292 out of 1711
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 08:00:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024424.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024424hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ts2_A Protein LIN-28 homolog 99.2 2.9E-12 1E-16 105.6 3.2 46 58-103 95-140 (148)
2 3pgw_S U1-70K; protein-RNA com 98.9 1.5E-08 5E-13 96.8 14.3 41 2-42 143-183 (437)
3 2a51_A Nucleocapsid protein; s 98.8 2.5E-09 8.5E-14 68.4 3.8 38 62-100 2-39 (39)
4 2ec7_A GAG polyprotein (PR55GA 98.8 4.9E-09 1.7E-13 70.4 5.3 42 59-101 5-46 (49)
5 2cqf_A RNA-binding protein LIN 98.8 5E-09 1.7E-13 74.0 5.0 42 61-102 8-49 (63)
6 2li8_A Protein LIN-28 homolog 98.8 5.4E-09 1.8E-13 76.2 4.8 43 59-101 23-65 (74)
7 3beg_B Splicing factor, argini 98.8 1.1E-08 3.6E-13 79.8 6.6 36 4-39 52-92 (115)
8 2bl6_A Nucleocapsid protein P1 98.8 4.7E-09 1.6E-13 66.3 3.7 36 62-100 2-37 (37)
9 2ihx_A Nucleocapsid (NC) prote 98.8 6.6E-09 2.3E-13 72.9 4.4 43 60-102 4-50 (61)
10 1cl4_A Protein (GAG polyprotei 98.7 3.2E-09 1.1E-13 74.2 2.4 42 61-102 2-50 (60)
11 1a1t_A Nucleocapsid protein; s 98.7 1.2E-08 3.9E-13 70.0 4.0 41 60-101 12-52 (55)
12 2wbr_A GW182, gawky, LD47780P; 98.7 1.6E-08 5.6E-13 76.1 4.9 38 2-39 42-79 (89)
13 2fc8_A NCL protein; structure 98.7 2.4E-08 8.1E-13 75.4 5.7 41 3-43 54-94 (102)
14 2jvr_A Nucleolar protein 3; RN 98.6 2.3E-08 8E-13 78.1 5.0 40 2-41 66-105 (111)
15 2dgu_A Heterogeneous nuclear r 98.6 7E-08 2.4E-12 73.2 7.5 41 2-42 44-84 (103)
16 2dnz_A Probable RNA-binding pr 98.6 7.4E-08 2.5E-12 71.6 7.2 41 3-43 47-87 (95)
17 2fy1_A RNA-binding motif prote 98.6 9.5E-08 3.2E-12 74.5 7.9 40 3-42 48-87 (116)
18 2cpd_A Apobec-1 stimulating pr 98.6 6E-08 2E-12 73.0 6.2 42 2-43 50-91 (99)
19 1x4a_A Splicing factor, argini 98.6 6.4E-08 2.2E-12 74.1 6.4 41 3-43 61-101 (109)
20 2dgt_A RNA-binding protein 30; 98.6 7.4E-08 2.5E-12 71.5 6.4 42 2-43 43-84 (92)
21 4fxv_A ELAV-like protein 1; RN 98.6 3.3E-08 1.1E-12 75.2 4.6 37 3-39 61-97 (99)
22 1h2v_Z 20 kDa nuclear CAP bind 98.6 4.2E-08 1.4E-12 80.0 5.4 41 3-43 81-121 (156)
23 2dgx_A KIAA0430 protein; RRM d 98.6 6.1E-08 2.1E-12 72.8 5.8 40 3-42 52-91 (96)
24 1u6f_A Tcubp1, RNA-binding pro 98.6 7.9E-08 2.7E-12 76.6 6.7 41 3-43 84-124 (139)
25 2xnq_A Nuclear polyadenylated 98.6 5.5E-08 1.9E-12 73.4 5.4 40 2-41 56-95 (97)
26 2cqh_A IGF-II mRNA-binding pro 98.6 7.4E-08 2.5E-12 71.5 6.0 41 2-42 43-84 (93)
27 2dnq_A RNA-binding protein 4B; 98.6 1.1E-07 3.8E-12 70.2 6.6 42 2-43 41-82 (90)
28 2fc9_A NCL protein; structure 98.6 9.3E-08 3.2E-12 72.1 6.3 42 2-43 52-93 (101)
29 3ex7_B RNA-binding protein 8A; 98.6 6.3E-08 2.2E-12 75.9 5.5 40 3-42 64-103 (126)
30 1x5t_A Splicing factor 3B subu 98.6 1.1E-07 3.8E-12 70.8 6.5 40 3-42 48-87 (96)
31 2dnp_A RNA-binding protein 14; 98.6 1E-07 3.5E-12 70.4 6.2 41 2-42 42-82 (90)
32 2cpi_A CCR4-NOT transcription 98.6 5E-08 1.7E-12 75.3 4.7 40 3-42 63-102 (111)
33 3s8s_A Histone-lysine N-methyl 98.6 5.2E-08 1.8E-12 75.6 4.7 38 3-40 48-85 (110)
34 1fjc_A Nucleolin RBD2, protein 98.6 5.7E-08 2E-12 72.5 4.8 41 3-43 53-93 (96)
35 1x4c_A Splicing factor, argini 98.6 1.3E-07 4.4E-12 72.5 6.8 40 4-43 51-95 (108)
36 1x5s_A Cold-inducible RNA-bind 98.5 1.3E-07 4.5E-12 71.3 6.6 42 2-43 53-94 (102)
37 2e5j_A Methenyltetrahydrofolat 98.5 8.4E-08 2.9E-12 72.0 5.5 40 2-41 55-94 (97)
38 2kvi_A Nuclear polyadenylated 98.5 6.4E-08 2.2E-12 72.6 4.7 42 2-43 44-85 (96)
39 3bs9_A Nucleolysin TIA-1 isofo 98.5 6.8E-08 2.3E-12 70.5 4.4 39 3-41 48-86 (87)
40 2cqb_A Peptidyl-prolyl CIS-tra 98.5 1.4E-07 4.7E-12 71.1 6.1 42 2-43 53-94 (102)
41 3mdf_A Peptidyl-prolyl CIS-tra 98.5 1E-07 3.5E-12 69.3 5.2 38 2-39 48-85 (85)
42 1why_A Hypothetical protein ri 98.5 1.4E-07 4.6E-12 70.7 5.9 40 3-42 53-94 (97)
43 2cpe_A RNA-binding protein EWS 98.5 1.5E-07 5.2E-12 72.3 6.4 41 3-43 65-105 (113)
44 1x5u_A Splicing factor 3B subu 98.5 1.8E-07 6.3E-12 70.8 6.5 41 2-42 56-96 (105)
45 2a3j_A U1 small nuclear ribonu 98.5 1.1E-07 3.6E-12 76.0 5.3 40 2-41 71-110 (127)
46 1fj7_A Nucleolin RBD1, protein 98.5 1.2E-07 4.1E-12 71.5 5.3 40 2-42 57-96 (101)
47 2cpx_A Hypothetical protein FL 98.5 1.9E-07 6.5E-12 71.9 6.6 41 2-42 66-106 (115)
48 2cqp_A RNA-binding protein 12; 98.5 1.2E-07 4.2E-12 70.9 5.2 39 3-41 57-95 (98)
49 1wi8_A EIF-4B, eukaryotic tran 98.5 1.8E-07 6.2E-12 70.9 6.2 40 3-43 57-96 (104)
50 2cqi_A Nucleolysin TIAR; RNA r 98.5 2.1E-07 7.3E-12 70.3 6.6 40 3-42 55-94 (103)
51 2cq0_A Eukaryotic translation 98.5 1.6E-07 5.6E-12 70.9 5.9 40 3-42 57-96 (103)
52 2hvz_A Splicing factor, argini 98.5 2.8E-07 9.4E-12 69.4 7.1 42 2-43 36-77 (101)
53 1whw_A Hypothetical protein ri 98.5 2.7E-07 9.1E-12 69.2 6.9 41 2-42 49-89 (99)
54 3md1_A Nuclear and cytoplasmic 98.5 1.3E-07 4.6E-12 68.3 5.1 39 3-41 43-81 (83)
55 4f25_A Polyadenylate-binding p 98.5 1.1E-07 3.9E-12 73.8 5.0 39 3-41 45-83 (115)
56 2dnm_A SRP46 splicing factor; 98.5 1.7E-07 5.7E-12 70.9 5.7 40 3-42 55-94 (103)
57 2dgo_A Cytotoxic granule-assoc 98.5 3.4E-07 1.1E-11 70.6 7.5 40 3-42 57-96 (115)
58 2d9p_A Polyadenylate-binding p 98.5 2.2E-07 7.5E-12 70.2 6.3 40 3-42 55-94 (103)
59 1x5p_A Negative elongation fac 98.5 1.5E-07 5.2E-12 70.5 5.3 41 2-42 48-88 (97)
60 2do4_A Squamous cell carcinoma 98.5 1.4E-07 4.7E-12 71.0 5.1 40 3-42 58-97 (100)
61 2e5h_A Zinc finger CCHC-type a 98.5 1.3E-07 4.3E-12 70.2 4.7 37 3-39 58-94 (94)
62 3p5t_L Cleavage and polyadenyl 98.5 4.9E-08 1.7E-12 72.4 2.4 39 3-41 45-83 (90)
63 2x1f_A MRNA 3'-END-processing 98.5 1.8E-07 6.1E-12 69.9 5.5 39 3-41 44-82 (96)
64 4a8x_A RNA-binding protein wit 98.5 1.9E-07 6.5E-12 68.2 5.5 39 2-40 46-84 (88)
65 1wg1_A KIAA1579 protein, homol 98.5 1.1E-07 3.7E-12 70.2 4.2 39 2-40 39-77 (88)
66 2la6_A RNA-binding protein FUS 98.5 1.2E-07 4E-12 71.3 4.5 37 3-39 63-99 (99)
67 3ns6_A Eukaryotic translation 98.5 1.5E-07 5.1E-12 71.3 5.1 38 3-40 54-92 (100)
68 2dgv_A HnRNP M, heterogeneous 98.5 1.3E-07 4.6E-12 69.7 4.7 40 3-42 48-87 (92)
69 2lkz_A RNA-binding protein 5; 98.5 9.3E-08 3.2E-12 72.4 3.8 39 2-40 52-94 (95)
70 1wf1_A RNA-binding protein RAL 98.5 1.9E-07 6.5E-12 71.6 5.6 40 2-41 61-100 (110)
71 2cpf_A RNA binding motif prote 98.5 2.2E-07 7.6E-12 69.5 5.8 40 3-42 50-89 (98)
72 2diu_A KIAA0430 protein; struc 98.5 1.6E-07 5.6E-12 71.5 5.0 39 4-42 47-85 (96)
73 2cq3_A RNA-binding protein 9; 98.5 3.3E-07 1.1E-11 69.3 6.7 40 3-42 55-94 (103)
74 2pe8_A Splicing factor 45; RRM 98.4 1.6E-07 5.5E-12 72.4 4.9 38 3-40 56-93 (105)
75 2dng_A Eukaryotic translation 98.4 2.2E-07 7.5E-12 70.3 5.5 39 3-42 56-94 (103)
76 2dit_A HIV TAT specific factor 98.4 2E-07 7E-12 72.0 5.5 40 3-42 64-103 (112)
77 2cqc_A Arginine/serine-rich sp 98.4 1.4E-07 4.7E-12 70.0 4.3 38 3-40 57-94 (95)
78 2cph_A RNA binding motif prote 98.4 4.6E-07 1.6E-11 68.7 7.2 40 3-42 58-98 (107)
79 1x4g_A Nucleolysin TIAR; struc 98.4 2.5E-07 8.4E-12 70.9 5.4 40 3-42 61-100 (109)
80 2div_A TRNA selenocysteine ass 98.4 2E-07 6.9E-12 69.8 4.8 39 3-41 52-94 (99)
81 2ek1_A RNA-binding protein 12; 98.4 1.6E-07 5.6E-12 69.7 4.3 37 3-39 57-93 (95)
82 2lxi_A RNA-binding protein 10; 98.4 1.8E-07 6.1E-12 69.8 4.5 41 2-42 43-84 (91)
83 1jmt_A Splicing factor U2AF 35 98.4 1.5E-07 5E-12 72.4 4.1 36 3-38 68-103 (104)
84 2dgw_A Probable RNA-binding pr 98.4 2E-07 6.9E-12 68.9 4.7 39 3-42 50-88 (91)
85 2cpj_A Non-POU domain-containi 98.4 2.2E-07 7.6E-12 69.8 4.9 40 3-42 51-90 (99)
86 1whx_A Hypothetical protein ri 98.4 2.2E-07 7.5E-12 71.9 5.0 39 2-40 45-83 (111)
87 1nu4_A U1A RNA binding domain; 98.4 2.8E-07 9.4E-12 68.7 5.3 39 3-41 51-89 (97)
88 2ywk_A Putative RNA-binding pr 98.4 1.8E-07 6E-12 69.5 4.2 38 3-40 57-94 (95)
89 2cpz_A CUG triplet repeat RNA- 98.4 1.9E-07 6.4E-12 72.1 4.5 40 3-42 67-106 (115)
90 2err_A Ataxin-2-binding protei 98.4 2.2E-07 7.6E-12 71.4 4.9 38 3-40 69-106 (109)
91 2ytc_A PRE-mRNA-splicing facto 98.4 2.1E-07 7E-12 67.7 4.4 37 3-39 48-85 (85)
92 1p27_B RNA-binding protein 8A; 98.4 2.1E-07 7.2E-12 70.6 4.6 39 3-41 65-103 (106)
93 2jvo_A Nucleolar protein 3; nu 98.4 2.5E-07 8.4E-12 71.3 5.0 40 3-42 65-104 (108)
94 2dgs_A DAZ-associated protein 98.4 5.5E-07 1.9E-11 67.5 6.8 40 2-42 51-90 (99)
95 3v4m_A Splicing factor U2AF 65 98.4 2.6E-07 9E-12 71.2 5.0 37 3-39 59-95 (105)
96 3ulh_A THO complex subunit 4; 98.4 2.3E-07 7.9E-12 70.5 4.6 37 3-39 70-106 (107)
97 2j76_E EIF-4B, EIF4B, eukaryot 98.4 2.4E-07 8.2E-12 70.0 4.5 38 3-41 61-98 (100)
98 1oo0_B CG8781-PA, drosophila Y 98.4 3.2E-07 1.1E-11 70.1 5.2 39 3-41 68-106 (110)
99 2bz2_A Negative elongation fac 98.4 3.4E-07 1.2E-11 72.1 5.4 41 2-42 72-112 (121)
100 2nlw_A Eukaryotic translation 98.4 2.5E-07 8.4E-12 70.6 4.4 39 3-41 61-100 (105)
101 2la4_A Nuclear and cytoplasmic 98.4 1.9E-07 6.5E-12 70.3 3.6 39 2-40 62-100 (101)
102 2kxn_B Transformer-2 protein h 98.4 3.1E-07 1.1E-11 73.1 5.0 40 2-41 87-126 (129)
103 2dgp_A Bruno-like 4, RNA bindi 98.4 7.9E-07 2.7E-11 67.4 7.1 41 2-42 54-97 (106)
104 2cqd_A RNA-binding region cont 98.4 9E-07 3.1E-11 68.3 7.4 39 2-41 58-96 (116)
105 2cq2_A Hypothetical protein LO 98.4 3.3E-07 1.1E-11 72.1 4.8 40 3-42 63-107 (114)
106 2dnh_A Bruno-like 5, RNA bindi 98.4 5.2E-07 1.8E-11 68.2 5.8 40 3-42 56-98 (105)
107 3s6e_A RNA-binding protein 39; 98.4 3.1E-07 1.1E-11 72.1 4.5 37 3-39 55-91 (114)
108 1p1t_A Cleavage stimulation fa 98.4 3.3E-07 1.1E-11 69.1 4.5 39 3-41 50-88 (104)
109 1x4d_A Matrin 3; structural ge 98.3 2.7E-07 9.1E-12 71.0 3.9 39 3-41 52-92 (102)
110 2jrs_A RNA-binding protein 39; 98.3 3.8E-07 1.3E-11 70.1 4.7 39 3-41 68-106 (108)
111 2dhg_A TRNA selenocysteine ass 98.3 4.9E-07 1.7E-11 68.3 5.2 40 3-42 51-91 (104)
112 2dis_A Unnamed protein product 98.3 4.7E-07 1.6E-11 69.0 5.1 41 2-42 51-93 (109)
113 1x4h_A RNA-binding protein 28; 98.3 9.1E-07 3.1E-11 67.5 6.7 41 2-42 56-102 (111)
114 3n9u_C Cleavage and polyadenyl 98.3 3.4E-07 1.2E-11 75.4 4.5 38 3-40 99-136 (156)
115 2lcw_A RNA-binding protein FUS 97.7 6.2E-08 2.1E-12 75.1 0.0 41 3-43 57-97 (116)
116 2do0_A HnRNP M, heterogeneous 98.3 1.3E-06 4.4E-11 67.1 7.5 39 3-41 56-94 (114)
117 1sjq_A Polypyrimidine tract-bi 98.3 3.2E-07 1.1E-11 71.1 3.9 40 3-42 52-93 (105)
118 3ucg_A Polyadenylate-binding p 98.3 5.3E-07 1.8E-11 66.0 4.6 38 3-41 48-85 (89)
119 2cq1_A PTB-like protein L; RRM 98.3 7.1E-07 2.4E-11 68.3 5.5 39 3-41 51-91 (101)
120 3ue2_A Poly(U)-binding-splicin 98.3 4.7E-07 1.6E-11 71.4 4.4 37 3-39 71-107 (118)
121 1wez_A HnRNP H', FTP-3, hetero 98.3 6.4E-07 2.2E-11 68.3 5.0 39 3-42 55-93 (102)
122 2kt5_A RNA and export factor-b 98.3 6E-07 2E-11 70.3 4.9 40 2-41 75-114 (124)
123 1wel_A RNA-binding protein 12; 98.3 3.1E-07 1.1E-11 72.1 3.2 36 3-39 67-102 (124)
124 2krb_A Eukaryotic translation 98.3 3.2E-07 1.1E-11 66.5 2.9 33 3-35 47-80 (81)
125 3r27_A HnRNP L, heterogeneous 98.3 5.1E-07 1.8E-11 69.3 4.0 39 2-40 56-96 (100)
126 1x4f_A Matrin 3; structural ge 98.3 8.9E-07 3E-11 69.3 5.3 39 3-41 62-102 (112)
127 3lqv_A PRE-mRNA branch site pr 98.3 7.9E-07 2.7E-11 68.5 5.0 38 3-40 47-84 (115)
128 2cq4_A RNA binding motif prote 98.3 5.1E-07 1.7E-11 69.5 3.9 38 2-40 66-103 (114)
129 1sjr_A Polypyrimidine tract-bi 98.3 7.9E-07 2.7E-11 74.2 5.3 39 3-41 84-124 (164)
130 3egn_A RNA-binding protein 40; 98.3 6.2E-07 2.1E-11 71.9 4.5 39 3-41 92-130 (143)
131 2mss_A Protein (musashi1); RNA 98.3 6.3E-07 2.1E-11 63.6 4.0 36 2-38 40-75 (75)
132 2e5i_A Heterogeneous nuclear r 98.3 8.9E-07 3E-11 70.5 5.2 39 3-41 61-102 (124)
133 2jwn_A Embryonic polyadenylate 98.3 9.9E-07 3.4E-11 68.8 5.4 39 3-42 78-116 (124)
134 2hzc_A Splicing factor U2AF 65 98.3 7.4E-07 2.5E-11 64.9 4.4 34 3-37 53-86 (87)
135 1wex_A Hypothetical protein (r 98.2 6.6E-07 2.3E-11 68.8 4.2 39 3-41 51-91 (104)
136 2ad9_A Polypyrimidine tract-bi 98.2 7.9E-07 2.7E-11 70.3 4.6 40 3-42 67-108 (119)
137 2ki2_A SS-DNA binding protein 98.2 6.5E-07 2.2E-11 65.8 3.7 38 3-41 43-80 (90)
138 3zzy_A Polypyrimidine tract-bi 98.2 9.7E-07 3.3E-11 70.9 5.0 39 3-41 65-106 (130)
139 2lea_A Serine/arginine-rich sp 98.2 7.1E-07 2.4E-11 71.4 4.1 41 2-42 88-128 (135)
140 2m2b_A RNA-binding protein 10; 98.2 5.5E-07 1.9E-11 71.4 3.1 40 2-42 66-109 (131)
141 2dnn_A RNA-binding protein 12; 98.2 1.1E-06 3.8E-11 68.2 4.7 37 2-39 55-91 (109)
142 1x4b_A Heterogeneous nuclear r 98.2 1.6E-06 5.4E-11 66.9 5.5 41 2-43 68-108 (116)
143 1s79_A Lupus LA protein; RRM, 98.2 9.8E-07 3.3E-11 67.6 4.1 37 2-39 51-87 (103)
144 3q2s_C Cleavage and polyadenyl 98.2 7.4E-07 2.5E-11 77.7 3.3 38 2-39 111-148 (229)
145 2db1_A Heterogeneous nuclear r 98.2 8.2E-07 2.8E-11 69.3 3.2 36 3-39 61-96 (118)
146 1x4e_A RNA binding motif, sing 98.2 3.3E-07 1.1E-11 66.7 0.8 37 3-39 47-83 (85)
147 4f02_A Polyadenylate-binding p 98.2 1.3E-06 4.6E-11 74.4 4.5 38 3-40 143-180 (213)
148 3tyt_A Heterogeneous nuclear r 98.1 1.7E-06 6E-11 74.0 5.0 39 2-40 41-79 (205)
149 1uaw_A Mouse-musashi-1; RNP-ty 98.1 1.4E-06 4.6E-11 62.0 3.6 35 3-38 42-76 (77)
150 2lmi_A GRSF-1, G-rich sequence 98.1 1.2E-06 4E-11 67.0 3.4 37 2-39 54-90 (107)
151 2cpy_A RNA-binding protein 12; 98.1 1.4E-06 4.7E-11 67.4 3.5 38 2-40 56-93 (114)
152 2d9o_A DNAJ (HSP40) homolog, s 98.1 4.7E-06 1.6E-10 63.7 6.2 39 2-42 53-91 (100)
153 2hgl_A HNRPF protein, heteroge 98.1 1.3E-06 4.5E-11 70.4 2.9 36 3-39 88-123 (136)
154 2dh8_A DAZ-associated protein 98.1 1.8E-06 6E-11 65.4 3.5 39 3-42 58-96 (105)
155 1x5o_A RNA binding motif, sing 98.1 3E-06 1E-10 65.0 4.8 37 3-39 66-110 (114)
156 3nyb_B Protein AIR2; polya RNA 98.1 1.4E-06 4.9E-11 64.6 2.5 41 61-101 6-65 (83)
157 1wg5_A Heterogeneous nuclear r 98.1 3.2E-06 1.1E-10 64.2 4.4 38 2-40 56-93 (104)
158 2e44_A Insulin-like growth fac 98.1 5E-06 1.7E-10 61.7 5.5 38 4-41 55-92 (96)
159 2hgn_A Heterogeneous nuclear r 98.0 1.3E-06 4.5E-11 70.7 2.1 40 2-42 85-124 (139)
160 2rs2_A Musashi-1, RNA-binding 98.0 4.4E-06 1.5E-10 64.1 4.6 39 2-41 66-104 (109)
161 3s7r_A Heterogeneous nuclear r 98.0 3.4E-06 1.1E-10 61.5 3.7 35 3-38 53-87 (87)
162 2e5g_A U6 snRNA-specific termi 98.0 6E-06 2.1E-10 61.3 4.5 36 5-41 47-82 (94)
163 1a6b_B Momulv, zinc finger pro 97.9 7.9E-06 2.7E-10 52.3 4.0 26 55-80 5-30 (40)
164 1iqt_A AUF1, heterogeneous nuc 97.9 4.8E-06 1.6E-10 58.8 3.2 36 2-38 40-75 (75)
165 2cqg_A TDP-43, TAR DNA-binding 97.9 1.1E-05 3.8E-10 60.6 5.4 38 3-42 57-94 (103)
166 1b7f_A Protein (SXL-lethal pro 97.9 1.3E-05 4.5E-10 64.4 5.2 39 3-41 45-83 (168)
167 2lli_A Protein AIR2; RNA surve 97.9 1E-05 3.4E-10 64.1 4.2 41 61-101 43-83 (124)
168 2lli_A Protein AIR2; RNA surve 97.8 1.2E-05 4E-10 63.7 4.3 41 60-100 64-123 (124)
169 3pgw_A U1-A; protein-RNA compl 97.8 1.3E-05 4.6E-10 70.5 5.1 39 3-41 52-90 (282)
170 1fxl_A Paraneoplastic encephal 97.8 1.3E-05 4.3E-10 64.2 4.5 39 3-41 44-82 (167)
171 2hgm_A HNRPF protein, heteroge 97.8 7.4E-06 2.5E-10 65.2 2.9 37 2-39 83-119 (126)
172 1fje_B Nucleolin RBD12, protei 97.8 1.3E-05 4.4E-10 65.3 4.3 39 2-41 53-91 (175)
173 2adc_A Polypyrimidine tract-bi 97.8 1.8E-05 6E-10 68.1 4.9 39 3-41 72-110 (229)
174 2yh0_A Splicing factor U2AF 65 97.8 1.2E-05 4.2E-10 66.5 3.8 39 2-41 50-88 (198)
175 2g4b_A Splicing factor U2AF 65 97.8 2E-05 6.8E-10 63.7 4.6 39 2-41 50-88 (172)
176 3md3_A Nuclear and cytoplasmic 97.8 2.4E-05 8.1E-10 62.6 4.9 39 3-41 41-79 (166)
177 2dnr_A Synaptojanin-1; RRM dom 97.8 1.7E-05 5.9E-10 59.7 3.6 37 3-40 49-85 (91)
178 1qm9_A Polypyrimidine tract-bi 97.7 1.7E-05 5.8E-10 66.1 3.9 39 3-41 41-79 (198)
179 2dha_A FLJ20171 protein; RRM d 97.7 7.8E-06 2.7E-10 64.7 1.7 36 3-39 68-103 (123)
180 2qfj_A FBP-interacting repress 97.7 3E-05 1E-09 65.0 5.1 39 2-40 69-107 (216)
181 3smz_A Protein raver-1, ribonu 97.7 2.7E-05 9.3E-10 68.6 4.6 39 3-41 226-264 (284)
182 2xs2_A Deleted in azoospermia- 97.7 1.2E-05 4E-10 60.4 1.6 37 3-41 50-86 (102)
183 1dsq_A Nucleic acid binding pr 97.6 2.4E-05 8.2E-10 45.3 2.0 19 61-79 3-21 (26)
184 1u6p_A GAG polyprotein; MLV, A 97.6 3.7E-05 1.3E-09 52.7 3.1 26 55-80 18-43 (56)
185 3sde_A Paraspeckle component 1 97.6 6E-05 2.1E-09 66.1 4.9 38 3-40 58-95 (261)
186 4f02_A Polyadenylate-binding p 97.5 6.3E-05 2.2E-09 63.9 4.5 38 3-40 57-94 (213)
187 3tht_A Alkylated DNA repair pr 97.5 0.0001 3.4E-09 68.3 5.3 38 2-39 55-97 (345)
188 3nyb_B Protein AIR2; polya RNA 97.5 3.9E-05 1.3E-09 56.8 1.9 20 82-101 5-24 (83)
189 1nc8_A Nucleocapsid protein; H 97.5 6.9E-05 2.4E-09 44.4 2.6 21 60-80 6-26 (29)
190 2ghp_A U4/U6 snRNA-associated 97.4 0.00011 3.7E-09 64.9 4.9 40 2-41 158-197 (292)
191 2dnl_A Cytoplasmic polyadenyla 97.4 8.2E-05 2.8E-09 57.2 3.5 34 3-38 52-85 (114)
192 3smz_A Protein raver-1, ribonu 97.4 0.00011 3.7E-09 64.7 4.5 39 3-41 137-175 (284)
193 2j8a_A Histone-lysine N-methyl 97.4 7E-05 2.4E-09 60.2 2.8 38 2-39 47-94 (136)
194 1l3k_A Heterogeneous nuclear r 97.4 0.00012 4E-09 60.4 4.3 38 3-41 55-92 (196)
195 1ufw_A Synaptojanin 2; RNP dom 97.4 0.00012 4.2E-09 55.4 3.6 35 4-39 59-93 (95)
196 3d2w_A TAR DNA-binding protein 97.3 0.00019 6.6E-09 52.9 4.6 35 3-41 48-84 (89)
197 1wf0_A TDP-43, TAR DNA-binding 97.3 0.00012 4.1E-09 53.3 2.9 38 3-42 42-79 (88)
198 3nmr_A Cugbp ELAV-like family 97.2 0.00029 1E-08 56.6 4.6 39 3-41 47-88 (175)
199 2ghp_A U4/U6 snRNA-associated 97.1 0.00036 1.2E-08 61.5 4.5 36 3-39 81-116 (292)
200 2ysa_A Retinoblastoma-binding 97.1 0.00023 7.9E-09 48.6 2.5 21 59-79 6-26 (55)
201 2li8_A Protein LIN-28 homolog 97.0 0.00023 7.8E-09 51.5 2.1 33 69-101 2-43 (74)
202 3sde_A Paraspeckle component 1 96.9 0.00057 2E-08 59.8 4.1 39 3-41 137-179 (261)
203 2cjk_A Nuclear polyadenylated 96.8 0.00084 2.9E-08 53.7 3.6 36 2-39 44-79 (167)
204 1a6b_B Momulv, zinc finger pro 96.6 0.0013 4.3E-08 41.9 2.7 25 81-105 9-33 (40)
205 3u1l_A PRE-mRNA-splicing facto 96.6 0.0013 4.6E-08 57.7 3.7 27 2-28 178-204 (240)
206 1u6p_A GAG polyprotein; MLV, A 96.3 0.0022 7.4E-08 43.9 2.6 24 81-104 22-45 (56)
207 1dsq_A Nucleic acid binding pr 96.2 0.0023 7.9E-08 36.8 1.9 19 83-101 3-21 (26)
208 1owx_A Lupus LA protein, SS-B, 96.1 0.0054 1.8E-07 48.4 4.6 36 4-39 56-94 (121)
209 2i2y_A Fusion protein consists 95.9 0.0017 5.9E-08 51.9 0.7 37 3-40 13-50 (150)
210 2l9w_A U4/U6 snRNA-associated- 95.6 0.011 3.8E-07 45.9 4.3 36 4-39 63-98 (117)
211 1cl4_A Protein (GAG polyprotei 95.4 0.0069 2.4E-07 41.5 2.3 21 60-80 30-50 (60)
212 1nc8_A Nucleocapsid protein; H 95.4 0.0076 2.6E-07 35.4 2.0 20 82-101 6-25 (29)
213 2a51_A Nucleocapsid protein; s 95.2 0.012 4.1E-07 36.8 2.6 19 60-78 21-39 (39)
214 2cqf_A RNA-binding protein LIN 95.1 0.013 4.4E-07 40.7 2.9 31 59-90 28-58 (63)
215 2ysa_A Retinoblastoma-binding 95.0 0.009 3.1E-07 40.6 1.7 19 82-100 7-25 (55)
216 2ihx_A Nucleocapsid (NC) prote 94.8 0.011 3.7E-07 40.8 1.8 21 60-80 30-50 (61)
217 2bl6_A Nucleocapsid protein P1 94.8 0.0096 3.3E-07 36.8 1.4 18 61-78 20-37 (37)
218 2kn4_A Immunoglobulin G-bindin 94.6 0.012 4E-07 47.1 1.7 24 3-26 13-36 (158)
219 2ec7_A GAG polyprotein (PR55GA 94.3 0.016 5.5E-07 38.1 1.7 20 60-79 27-46 (49)
220 1a1t_A Nucleocapsid protein; s 93.9 0.02 6.7E-07 38.5 1.4 20 60-79 33-52 (55)
221 1wey_A Calcipressin 1; structu 93.1 0.07 2.4E-06 40.8 3.4 35 6-40 49-83 (104)
222 3ts2_A Protein LIN-28 homolog 92.5 0.052 1.8E-06 44.0 2.2 21 59-79 118-138 (148)
223 2g0c_A ATP-dependent RNA helic 83.5 0.85 2.9E-05 31.9 3.1 37 2-39 39-75 (76)
224 2hqh_E Restin; beta/BETA struc 71.2 0.89 3E-05 25.8 0.1 17 62-78 5-21 (26)
225 3p3d_A Nucleoporin 53; structu 69.2 6 0.0002 31.3 4.6 34 4-38 63-96 (132)
226 1wwh_A Nucleoporin 35, nucleop 62.4 8.1 0.00028 30.0 4.1 34 3-37 59-93 (119)
227 2l08_A Regulator of nonsense t 57.2 11 0.00039 28.1 3.9 35 5-39 55-94 (97)
228 2pzo_E CAP-Gly domain-containi 56.1 2.7 9.1E-05 26.5 0.2 17 62-78 22-38 (42)
229 1uw4_A UPF3X; nonsense mediate 55.5 15 0.0005 27.0 4.3 35 5-39 47-86 (91)
230 2dhx_A Poly (ADP-ribose) polym 49.5 17 0.0006 27.4 3.9 34 4-38 48-81 (104)
231 3h7h_B Transcription elongatio 40.4 18 0.00061 27.3 2.7 26 3-28 51-76 (106)
232 3lpe_A Putative transcription 39.1 21 0.00073 25.9 2.9 24 3-26 50-73 (92)
233 3pgw_S U1-70K; protein-RNA com 37.5 86 0.0029 29.0 7.6 23 6-28 150-174 (437)
234 3e2u_E CAP-Gly domain-containi 34.1 9.5 0.00033 24.1 0.2 17 62-78 22-38 (42)
235 2ytv_A Cold shock domain-conta 31.8 16 0.00054 26.0 1.1 13 1-13 16-28 (79)
236 1rk8_A CG8781-PA, CG8781-PA pr 31.8 9.8 0.00034 30.1 0.0 31 8-38 11-43 (165)
237 3p8b_B Transcription antitermi 21.7 60 0.002 25.4 3.0 24 3-26 43-66 (152)
238 2k5n_A Putative cold-shock pro 21.0 44 0.0015 23.3 1.8 12 2-13 13-24 (74)
239 1x65_A UNR protein; cell-free 20.7 36 0.0012 24.7 1.3 12 2-13 17-28 (89)
No 1
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=99.23 E-value=2.9e-12 Score=105.59 Aligned_cols=46 Identities=33% Similarity=0.711 Sum_probs=40.6
Q ss_pred CCCCccccCCCCCCCCCcccCCCCCCccccCCCCCccccccCCCCC
Q 024424 58 PGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPK 103 (268)
Q Consensus 58 ~~~~rC~~CG~~GH~ardC~~~~~~~~cyrcg~~GH~~r~c~~s~~ 103 (268)
.....||+||..|||+++|+.......||.|+..||++++|+....
T Consensus 95 ~~~~~C~~Cg~~GH~a~~C~~~~~~~~C~~Cg~~GH~~r~Cp~~~~ 140 (148)
T 3ts2_A 95 KGGDRCYNCGGLDHHAKECKLPPQPKKCHFCQSINHMVASCPLKAQ 140 (148)
T ss_dssp CCSCCCTTTCCSSCCGGGCCSCCCCCCCTTTCCSSCCGGGCTTTTC
T ss_pred CCCCcccEeCCccchhhhCCCCCCCCcccccCCcCCEeccCcCCCC
Confidence 3457899999999999999987767899999999999999998543
No 2
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=98.91 E-value=1.5e-08 Score=96.81 Aligned_cols=41 Identities=34% Similarity=0.737 Sum_probs=38.1
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCCC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~~ 42 (268)
.+|||||+|.+.++|+.||..|||++|+|..|.|+|+....
T Consensus 143 ~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~~~ 183 (437)
T 3pgw_S 143 PRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRT 183 (437)
T ss_pred ccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCCCC
Confidence 37999999999999999999999999999999999998643
No 3
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=98.83 E-value=2.5e-09 Score=68.38 Aligned_cols=38 Identities=39% Similarity=0.982 Sum_probs=34.6
Q ss_pred ccccCCCCCCCCCcccCCCCCCccccCCCCCccccccCC
Q 024424 62 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQN 100 (268)
Q Consensus 62 rC~~CG~~GH~ardC~~~~~~~~cyrcg~~GH~~r~c~~ 100 (268)
.||+||+.||++.+|+.+. ...||.|+..||++++|++
T Consensus 2 ~C~~Cg~~GH~a~~C~~~~-~~~C~~Cg~~GH~~~~C~~ 39 (39)
T 2a51_A 2 TCFNCGKPGHTARMCRQPR-QEGCWNCGSKEHRFAQCPK 39 (39)
T ss_dssp BCTTTCCBSSCTTTCCSCC-CSSCTTTCCSSSCTTTSCC
T ss_pred eeeccCCCCcccccCCCCC-CCccccCCCCCCccCcCcC
Confidence 6999999999999999863 5799999999999999974
No 4
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=98.82 E-value=4.9e-09 Score=70.37 Aligned_cols=42 Identities=40% Similarity=1.057 Sum_probs=37.1
Q ss_pred CCCccccCCCCCCCCCcccCCCCCCccccCCCCCccccccCCC
Q 024424 59 GSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNS 101 (268)
Q Consensus 59 ~~~rC~~CG~~GH~ardC~~~~~~~~cyrcg~~GH~~r~c~~s 101 (268)
....||+||+.|||+.+|+.+. ...||.|+..||++++|+..
T Consensus 5 r~~~C~~Cg~~GH~a~~C~~~~-~~~C~~Cg~~GH~~~~C~~~ 46 (49)
T 2ec7_A 5 KVIRCWNCGKEGHSARQCRAPR-RQGCWKCGKTGHVMAKCPER 46 (49)
T ss_dssp CCCBCTTTCCBTCCTTTCCCSS-CCSCSSSCCSSCCGGGCCSS
T ss_pred CcCeeeecCCCCcChhhCcCCC-CCeeCcCCCcCCccCCCcCC
Confidence 3468999999999999999863 56899999999999999864
No 5
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.80 E-value=5e-09 Score=74.02 Aligned_cols=42 Identities=33% Similarity=0.716 Sum_probs=38.2
Q ss_pred CccccCCCCCCCCCcccCCCCCCccccCCCCCccccccCCCC
Q 024424 61 GRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSP 102 (268)
Q Consensus 61 ~rC~~CG~~GH~ardC~~~~~~~~cyrcg~~GH~~r~c~~s~ 102 (268)
..||+||+.|||+.+|+.......||.|++.||++++|+...
T Consensus 8 ~~C~~Cg~~GH~a~~C~~~~~~~~C~~Cg~~GH~ar~Cp~~~ 49 (63)
T 2cqf_A 8 DRCYNCGGLDHHAKECKLPPQPKKCHFCQSISHMVASCPLKA 49 (63)
T ss_dssp CCCSSSCCSSSCTTTCCSCCCSSCCTTTCCSSSCTTTCTGGG
T ss_pred CcccccCCCCcChhhCCCCCCCCccCCcCCcCCccCcCCCcc
Confidence 679999999999999998766789999999999999999743
No 6
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=98.78 E-value=5.4e-09 Score=76.22 Aligned_cols=43 Identities=33% Similarity=0.692 Sum_probs=38.5
Q ss_pred CCCccccCCCCCCCCCcccCCCCCCccccCCCCCccccccCCC
Q 024424 59 GSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNS 101 (268)
Q Consensus 59 ~~~rC~~CG~~GH~ardC~~~~~~~~cyrcg~~GH~~r~c~~s 101 (268)
....||+||..|||+.+|+.......||.|++.||++++|+..
T Consensus 23 r~~~C~~Cg~~GH~a~~C~~~~~~~~C~~Cg~~GH~ar~Cp~~ 65 (74)
T 2li8_A 23 KGDRCYNCGGLDHHAKECKLPPQPKKCHFCQSISHMVASCPLK 65 (74)
T ss_dssp TTSCCTTTCCSSSCTTTCSSCCCCCCCTTTCCTTSCGGGCTTG
T ss_pred CCCcccccCCcCcCcccCCCCCCCCccCCcCCcCCccCcCcCC
Confidence 3468999999999999999876678999999999999999863
No 7
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=98.77 E-value=1.1e-08 Score=79.82 Aligned_cols=36 Identities=22% Similarity=0.217 Sum_probs=32.0
Q ss_pred CeEEEEeCCHHHHHHHHHhhCCCeecCcc-----eEEEecc
Q 024424 4 DFAFVEFSDPRDADDARYSLNGRDVDGSR-----IIVEFAR 39 (268)
Q Consensus 4 GfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~-----IrVe~a~ 39 (268)
|||||+|++.++|++||+.|||++|+|+. |.|..+.
T Consensus 52 g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~ 92 (115)
T 3beg_B 52 GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 92 (115)
T ss_dssp SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC
T ss_pred CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCC
Confidence 99999999999999999999999999998 5555543
No 8
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=98.77 E-value=4.7e-09 Score=66.30 Aligned_cols=36 Identities=36% Similarity=1.155 Sum_probs=33.3
Q ss_pred ccccCCCCCCCCCcccCCCCCCccccCCCCCccccccCC
Q 024424 62 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQN 100 (268)
Q Consensus 62 rC~~CG~~GH~ardC~~~~~~~~cyrcg~~GH~~r~c~~ 100 (268)
.||+||+.||++.+|+.+ ..||.|+..||++++|++
T Consensus 2 ~C~~Cg~~GH~~~~C~~~---~~C~~Cg~~GH~a~~C~~ 37 (37)
T 2bl6_A 2 TCYNCGKPGHLSSQCRAP---KVCFKCKQPGHFSKQCRS 37 (37)
T ss_dssp CBSSSCCSSCCTTTSSCB---TTCSSCCCTTGGGGTTCC
T ss_pred cccccCCCCcchhhCcCc---CeEccCCCcCCccCcCcC
Confidence 699999999999999976 689999999999999974
No 9
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=98.75 E-value=6.6e-09 Score=72.88 Aligned_cols=43 Identities=28% Similarity=0.842 Sum_probs=37.3
Q ss_pred CCccccCCCCCCCCCcccCCCC----CCccccCCCCCccccccCCCC
Q 024424 60 SGRCFNCGIDGHWARDCKAGDW----KNKCYRCGERGHIERNCQNSP 102 (268)
Q Consensus 60 ~~rC~~CG~~GH~ardC~~~~~----~~~cyrcg~~GH~~r~c~~s~ 102 (268)
...||+||+.|||+.+|+.... ...||.|++.||++++|+...
T Consensus 4 ~~~C~~Cg~~GH~a~~C~~~~~~~~~~~~C~~Cg~~GH~ar~C~~~~ 50 (61)
T 2ihx_A 4 RGLCYTCGSPGHYQAQCPKKRKSGNSRERCQLCNGMGHNAKQCRKRD 50 (61)
T ss_dssp TTBCSSSCCBTCCGGGCTTTTSSSCCCSBCTTTCCBSSCGGGCCCCC
T ss_pred CCcccccCCCCeehhhCcCCcCCCCCCCeeCCCCCCCCCcCCCcCCC
Confidence 4679999999999999998643 367999999999999999743
No 10
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=98.74 E-value=3.2e-09 Score=74.17 Aligned_cols=42 Identities=33% Similarity=0.892 Sum_probs=19.2
Q ss_pred CccccCCCCCCCCCcccCCC-------CCCccccCCCCCccccccCCCC
Q 024424 61 GRCFNCGIDGHWARDCKAGD-------WKNKCYRCGERGHIERNCQNSP 102 (268)
Q Consensus 61 ~rC~~CG~~GH~ardC~~~~-------~~~~cyrcg~~GH~~r~c~~s~ 102 (268)
..||+||+.|||+++|+... ....||.|++.||++++|+...
T Consensus 2 ~~Cf~Cg~~GH~a~~C~~~~~~~~~~~~~~~C~~Cg~~GH~ar~C~~~~ 50 (60)
T 1cl4_A 2 GSCFKCGKKGHFAKNCHEHAHNNAEPKVPGLCPRCKRGKHWANECKSKT 50 (60)
T ss_dssp ---------------------------CCCSCSSCSSCSSCSTTCCCTT
T ss_pred CccccCCCCCcCHhhCcCCCCCccccCCCcceeECCCCCCccCcCCCcc
Confidence 36999999999999999763 3578999999999999999754
No 11
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=98.69 E-value=1.2e-08 Score=70.04 Aligned_cols=41 Identities=41% Similarity=1.148 Sum_probs=36.6
Q ss_pred CCccccCCCCCCCCCcccCCCCCCccccCCCCCccccccCCC
Q 024424 60 SGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNS 101 (268)
Q Consensus 60 ~~rC~~CG~~GH~ardC~~~~~~~~cyrcg~~GH~~r~c~~s 101 (268)
...||+||+.|||+.+|+.+. ...||.|++.||++++|+..
T Consensus 12 ~~~C~~Cg~~GH~a~~C~~~~-~~~C~~Cg~~GH~~~~C~~~ 52 (55)
T 1a1t_A 12 TVKCFNCGKEGHIAKNCRAPR-KKGCWKCGKEGHQMKDCTER 52 (55)
T ss_dssp TCBCTTTCCBSSCGGGCSSCS-CCBCTTTCCBSSCGGGCSSS
T ss_pred CcceeeeCCCCcChhhcCCCC-CCEeCCCCCcCCccCCCcCc
Confidence 468999999999999999863 56899999999999999874
No 12
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=98.68 E-value=1.6e-08 Score=76.13 Aligned_cols=38 Identities=18% Similarity=0.352 Sum_probs=36.4
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEecc
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 39 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~ 39 (268)
.+|||||+|.+.++|++||+.|||.+|.|+.|.|.+|.
T Consensus 42 ~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 42 NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 58999999999999999999999999999999999984
No 13
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.67 E-value=2.4e-08 Score=75.41 Aligned_cols=41 Identities=24% Similarity=0.633 Sum_probs=38.1
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCCCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPR 43 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~~r 43 (268)
+|||||+|.+.++|+.||..|+|.+|+|+.|.|++++....
T Consensus 54 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 94 (102)
T 2fc8_A 54 KGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGE 94 (102)
T ss_dssp EEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCCCS
T ss_pred CcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCCCC
Confidence 58999999999999999999999999999999999986543
No 14
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=98.64 E-value=2.3e-08 Score=78.08 Aligned_cols=40 Identities=25% Similarity=0.155 Sum_probs=37.1
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~ 41 (268)
.+|||||+|.+.++|++||+.|||.+|+|+.|.|+++...
T Consensus 66 ~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 66 FDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNP 105 (111)
T ss_dssp SSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC-
T ss_pred CCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 3799999999999999999999999999999999999754
No 15
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=98.64 E-value=7e-08 Score=73.19 Aligned_cols=41 Identities=32% Similarity=0.598 Sum_probs=38.2
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCCC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~~ 42 (268)
.+|||||+|.+.++|+.||..|+|.+|+|+.|.|+++....
T Consensus 44 ~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 84 (103)
T 2dgu_A 44 LKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPD 84 (103)
T ss_dssp CSSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred ECCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCc
Confidence 47899999999999999999999999999999999998654
No 16
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.63 E-value=7.4e-08 Score=71.60 Aligned_cols=41 Identities=27% Similarity=0.395 Sum_probs=38.3
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCCCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPR 43 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~~r 43 (268)
+|||||+|.+.++|+.||..|+|..|+|+.|.|+++.....
T Consensus 47 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 87 (95)
T 2dnz_A 47 KGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLD 87 (95)
T ss_dssp CSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSCCCC
T ss_pred eeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcccccC
Confidence 68999999999999999999999999999999999986544
No 17
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=98.62 E-value=9.5e-08 Score=74.53 Aligned_cols=40 Identities=40% Similarity=0.704 Sum_probs=37.7
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~~ 42 (268)
+|||||+|.+.++|+.||..|+|..|+|+.|.|+++....
T Consensus 48 ~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 87 (116)
T 2fy1_A 48 RGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKKPS 87 (116)
T ss_dssp CCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCCSS
T ss_pred ccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCC
Confidence 6999999999999999999999999999999999998654
No 18
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.60 E-value=6e-08 Score=72.97 Aligned_cols=42 Identities=45% Similarity=0.639 Sum_probs=38.7
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCCCC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPR 43 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~~r 43 (268)
.+|||||+|.+.++|+.||..|+|..|+|+.|.|+++.....
T Consensus 50 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 91 (99)
T 2cpd_A 50 IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVDK 91 (99)
T ss_dssp CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCCCC
T ss_pred eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCC
Confidence 479999999999999999999999999999999999986543
No 19
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.60 E-value=6.4e-08 Score=74.09 Aligned_cols=41 Identities=59% Similarity=0.943 Sum_probs=38.2
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCCCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPR 43 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~~r 43 (268)
+|||||+|.+.++|+.||+.|+|.+|+|+.|.|+++.....
T Consensus 61 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 101 (109)
T 1x4a_A 61 PPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRG 101 (109)
T ss_dssp SCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCCCCC
T ss_pred CcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcccCCC
Confidence 68999999999999999999999999999999999986543
No 20
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.60 E-value=7.4e-08 Score=71.48 Aligned_cols=42 Identities=29% Similarity=0.503 Sum_probs=38.6
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCCCC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPR 43 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~~r 43 (268)
.++||||+|.+.++|+.||..|+|.+|+|+.|.|+++.....
T Consensus 43 ~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 84 (92)
T 2dgt_A 43 VKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLR 84 (92)
T ss_dssp CSSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCCS
T ss_pred ECCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCCC
Confidence 468999999999999999999999999999999999986543
No 21
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=98.60 E-value=3.3e-08 Score=75.16 Aligned_cols=37 Identities=32% Similarity=0.578 Sum_probs=35.7
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEecc
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 39 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~ 39 (268)
+|||||+|.+.++|+.||..|||..|.|+.|.|++++
T Consensus 61 kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 61 LGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred cccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 5899999999999999999999999999999999986
No 22
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=98.60 E-value=4.2e-08 Score=79.98 Aligned_cols=41 Identities=29% Similarity=0.452 Sum_probs=38.0
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCCCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPR 43 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~~r 43 (268)
+|||||+|.+.++|+.||..|+|.+|+|..|.|+++.....
T Consensus 81 ~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 121 (156)
T 1h2v_Z 81 CGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKE 121 (156)
T ss_dssp EEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEESCCCT
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 58999999999999999999999999999999999986543
No 23
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.59 E-value=6.1e-08 Score=72.78 Aligned_cols=40 Identities=28% Similarity=0.343 Sum_probs=37.6
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~~ 42 (268)
+|||||+|.+.++|+.||+.|||.+|+|+.|.|+++....
T Consensus 52 rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~~~~ 91 (96)
T 2dgx_A 52 QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLATGAS 91 (96)
T ss_dssp TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCSS
T ss_pred CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 7899999999999999999999999999999999997543
No 24
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=98.59 E-value=7.9e-08 Score=76.62 Aligned_cols=41 Identities=32% Similarity=0.519 Sum_probs=38.1
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCCCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPR 43 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~~r 43 (268)
+|||||+|.+.++|+.||..|+|..|.|+.|.|+++.....
T Consensus 84 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 124 (139)
T 1u6f_A 84 RGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASGHQ 124 (139)
T ss_dssp EEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESSCCCC
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 68999999999999999999999999999999999986543
No 25
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=98.58 E-value=5.5e-08 Score=73.42 Aligned_cols=40 Identities=25% Similarity=0.463 Sum_probs=37.6
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~ 41 (268)
.+|||||+|.+.++|+.||..|+|..|+|+.|.|+++...
T Consensus 56 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (97)
T 2xnq_A 56 KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSN 95 (97)
T ss_dssp CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCC
T ss_pred eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCC
Confidence 4799999999999999999999999999999999999754
No 26
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.58 E-value=7.4e-08 Score=71.53 Aligned_cols=41 Identities=27% Similarity=0.435 Sum_probs=38.1
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCC-CeecCcceEEEeccCCC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNG-RDVDGSRIIVEFARGGP 42 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG-~~l~Gr~IrVe~a~~~~ 42 (268)
.+|||||+|.+.++|+.||..|+| .+|+|+.|.|+++....
T Consensus 43 ~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~~ 84 (93)
T 2cqh_A 43 KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSKK 84 (93)
T ss_dssp ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCCC
T ss_pred CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCcc
Confidence 479999999999999999999999 99999999999998654
No 27
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.57 E-value=1.1e-07 Score=70.25 Aligned_cols=42 Identities=26% Similarity=0.442 Sum_probs=38.6
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCCCC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPR 43 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~~r 43 (268)
.+|||||+|.+.++|+.||..|+|..|+|+.|.|+++.....
T Consensus 41 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 82 (90)
T 2dnq_A 41 IKNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSK 82 (90)
T ss_dssp ETTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCC
T ss_pred ECCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCC
Confidence 379999999999999999999999999999999999986543
No 28
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.57 E-value=9.3e-08 Score=72.07 Aligned_cols=42 Identities=31% Similarity=0.510 Sum_probs=38.6
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCCCC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPR 43 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~~r 43 (268)
.+|||||+|.+.++|+.||..|+|..|+|+.|.|+++.....
T Consensus 52 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 93 (101)
T 2fc9_A 52 SKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGS 93 (101)
T ss_dssp BCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSCCC
T ss_pred EeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCCCC
Confidence 369999999999999999999999999999999999986543
No 29
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=98.56 E-value=6.3e-08 Score=75.91 Aligned_cols=40 Identities=28% Similarity=0.460 Sum_probs=37.7
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~~ 42 (268)
+|||||+|.+.++|+.||..|+|.+|+|..|.|+++....
T Consensus 64 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 103 (126)
T 3ex7_B 64 KGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRG 103 (126)
T ss_dssp CSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESEESS
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEecCCC
Confidence 7999999999999999999999999999999999997644
No 30
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.56 E-value=1.1e-07 Score=70.78 Aligned_cols=40 Identities=25% Similarity=0.398 Sum_probs=37.7
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~~ 42 (268)
+|||||+|.+.++|+.||..|+|..|+|+.|.|+++....
T Consensus 48 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 87 (96)
T 1x5t_A 48 KGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKD 87 (96)
T ss_dssp CSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESCCCC
T ss_pred CeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEecccC
Confidence 6899999999999999999999999999999999998654
No 31
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.56 E-value=1e-07 Score=70.44 Aligned_cols=41 Identities=41% Similarity=0.667 Sum_probs=38.0
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCCC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~~ 42 (268)
.++||||+|.+.++|+.||..|+|..|+|+.|.|+++....
T Consensus 42 ~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 82 (90)
T 2dnp_A 42 VKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQ 82 (90)
T ss_dssp CSSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred ECCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCC
Confidence 46899999999999999999999999999999999998654
No 32
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.56 E-value=5e-08 Score=75.28 Aligned_cols=40 Identities=23% Similarity=0.218 Sum_probs=37.5
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~~ 42 (268)
+|||||+|.+.++|+.||+.|||.+|+|+.|.|+++....
T Consensus 63 ~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 63 SASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGTTKY 102 (111)
T ss_dssp CEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEESCCCCS
T ss_pred CeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEEeccccc
Confidence 4899999999999999999999999999999999998654
No 33
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=98.56 E-value=5.2e-08 Score=75.60 Aligned_cols=38 Identities=24% Similarity=0.221 Sum_probs=36.3
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 40 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~ 40 (268)
+|||||+|++.++|+.||+.|||.+|+|+.|.|+++..
T Consensus 48 rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~ 85 (110)
T 3s8s_A 48 LGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIK 85 (110)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECST
T ss_pred eeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 68999999999999999999999999999999999864
No 34
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.55 E-value=5.7e-08 Score=72.46 Aligned_cols=41 Identities=20% Similarity=0.421 Sum_probs=37.9
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCCCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPR 43 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~~r 43 (268)
+|||||+|.+.++|+.||..|+|..|+|+.|.|+++.....
T Consensus 53 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 93 (96)
T 1fjc_A 53 KGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGG 93 (96)
T ss_dssp EEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSCC
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCCC
Confidence 68999999999999999999999999999999999976543
No 35
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.55 E-value=1.3e-07 Score=72.50 Aligned_cols=40 Identities=20% Similarity=0.162 Sum_probs=37.4
Q ss_pred CeEEEEeCCHHHHHHHHHhhCCCeecC-----cceEEEeccCCCC
Q 024424 4 DFAFVEFSDPRDADDARYSLNGRDVDG-----SRIIVEFARGGPR 43 (268)
Q Consensus 4 GfgFVeF~~~~dA~~Ai~~ldG~~l~G-----r~IrVe~a~~~~r 43 (268)
|||||+|++.++|+.||+.|||.+|+| +.|.|+++.....
T Consensus 51 g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~~~~ 95 (108)
T 1x4c_A 51 GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPRSP 95 (108)
T ss_dssp TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESSCCSC
T ss_pred CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCCCCCC
Confidence 899999999999999999999999999 9999999986544
No 36
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.54 E-value=1.3e-07 Score=71.27 Aligned_cols=42 Identities=40% Similarity=0.646 Sum_probs=38.5
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCCCC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPR 43 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~~r 43 (268)
.+|||||+|.+.++|+.||..|+|..|+|+.|.|+++.....
T Consensus 53 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 94 (102)
T 1x5s_A 53 SRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSD 94 (102)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEECCCC
T ss_pred cccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 368999999999999999999999999999999999986543
No 37
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.54 E-value=8.4e-08 Score=71.96 Aligned_cols=40 Identities=28% Similarity=0.380 Sum_probs=37.6
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~ 41 (268)
.+|||||+|.+.++|+.||..|+|.+|+|+.|.|+++...
T Consensus 55 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 55 PRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp TTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred CCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 4799999999999999999999999999999999999754
No 38
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=98.54 E-value=6.4e-08 Score=72.57 Aligned_cols=42 Identities=26% Similarity=0.476 Sum_probs=38.6
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCCCC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPR 43 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~~r 43 (268)
.+|||||+|.+.++|+.||..|+|..|.|+.|.|+++.....
T Consensus 44 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 85 (96)
T 2kvi_A 44 KNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNAR 85 (96)
T ss_dssp ETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCCC
T ss_pred eCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCCC
Confidence 479999999999999999999999999999999999986543
No 39
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=98.53 E-value=6.8e-08 Score=70.55 Aligned_cols=39 Identities=26% Similarity=0.478 Sum_probs=35.8
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~ 41 (268)
+|||||+|.+.++|+.||..|+|..|+|+.|.|+++...
T Consensus 48 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~k 86 (87)
T 3bs9_A 48 KGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 86 (87)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC--
T ss_pred ceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecCCC
Confidence 589999999999999999999999999999999998743
No 40
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.52 E-value=1.4e-07 Score=71.13 Aligned_cols=42 Identities=36% Similarity=0.427 Sum_probs=38.6
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCCCC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPR 43 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~~r 43 (268)
.+|||||+|.+.++|+.||+.|+|..|+|+.|.|+++.....
T Consensus 53 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 94 (102)
T 2cqb_A 53 HRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPMRI 94 (102)
T ss_dssp CSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECCCCCC
T ss_pred cceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCCCCCC
Confidence 479999999999999999999999999999999999986543
No 41
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=98.52 E-value=1e-07 Score=69.25 Aligned_cols=38 Identities=39% Similarity=0.545 Sum_probs=35.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEecc
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 39 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~ 39 (268)
.+|||||+|.+.++|+.||..|+|..|+|+.|.|++++
T Consensus 48 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ak 85 (85)
T 3mdf_A 48 HRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 85 (85)
T ss_dssp ECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred cccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 36899999999999999999999999999999999974
No 42
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.52 E-value=1.4e-07 Score=70.73 Aligned_cols=40 Identities=28% Similarity=0.576 Sum_probs=37.5
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeec--CcceEEEeccCCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVD--GSRIIVEFARGGP 42 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~--Gr~IrVe~a~~~~ 42 (268)
+|||||+|.+.++|+.||..|+|..|+ |+.|.|+++...+
T Consensus 53 ~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~~ 94 (97)
T 1why_A 53 DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSGP 94 (97)
T ss_dssp SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCCC
T ss_pred CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCCC
Confidence 689999999999999999999999999 9999999998654
No 43
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.51 E-value=1.5e-07 Score=72.30 Aligned_cols=41 Identities=34% Similarity=0.524 Sum_probs=38.1
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCCCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPR 43 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~~r 43 (268)
+|||||+|.+.++|+.||..|+|.+|+|+.|.|+++.....
T Consensus 65 ~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 65 KGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPP 105 (113)
T ss_dssp CSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECSSCCCC
T ss_pred eeEEEEEECCHHHHHHHHHHcCCCccCCCEEEEEECCCCCC
Confidence 68999999999999999999999999999999999986543
No 44
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.51 E-value=1.8e-07 Score=70.82 Aligned_cols=41 Identities=29% Similarity=0.323 Sum_probs=38.0
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCCC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~~ 42 (268)
.+|||||+|.+.++|+.||..|+|.+|+|+.|.|+++....
T Consensus 56 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 96 (105)
T 1x5u_A 56 HQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASAHN 96 (105)
T ss_dssp BCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTTTS
T ss_pred CCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCC
Confidence 36899999999999999999999999999999999998654
No 45
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=98.50 E-value=1.1e-07 Score=76.02 Aligned_cols=40 Identities=15% Similarity=0.344 Sum_probs=37.5
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~ 41 (268)
.+|||||+|.+.++|+.||..|||..|.|+.|.|.|+...
T Consensus 71 ~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~~ 110 (127)
T 2a3j_A 71 NSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSETP 110 (127)
T ss_dssp SCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECCCC
T ss_pred cCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEccCc
Confidence 3699999999999999999999999999999999999754
No 46
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.50 E-value=1.2e-07 Score=71.47 Aligned_cols=40 Identities=33% Similarity=0.546 Sum_probs=37.0
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCCC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~~ 42 (268)
.+|||||+|.+.++|+.||+ |+|..|.|+.|.|+++....
T Consensus 57 ~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~~~~ 96 (101)
T 1fj7_A 57 NRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGRD 96 (101)
T ss_dssp TTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCSCCC
T ss_pred cCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcCCCC
Confidence 47999999999999999998 99999999999999998643
No 47
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.50 E-value=1.9e-07 Score=71.88 Aligned_cols=41 Identities=27% Similarity=0.396 Sum_probs=38.1
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCCC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~~ 42 (268)
.+|||||+|.+.++|+.||..|+|..|+|+.|.|+++....
T Consensus 66 ~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~ 106 (115)
T 2cpx_A 66 MRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKNKK 106 (115)
T ss_dssp SCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECCCCS
T ss_pred cceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEccCCC
Confidence 36999999999999999999999999999999999998654
No 48
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.49 E-value=1.2e-07 Score=70.92 Aligned_cols=39 Identities=23% Similarity=0.353 Sum_probs=36.8
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~ 41 (268)
+|||||+|.+.++|+.||..|+|..|+|+.|.|+++...
T Consensus 57 ~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (98)
T 2cqp_A 57 TGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGSGP 95 (98)
T ss_dssp EEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESSCS
T ss_pred eeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcCCC
Confidence 689999999999999999999999999999999998743
No 49
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.49 E-value=1.8e-07 Score=70.92 Aligned_cols=40 Identities=30% Similarity=0.422 Sum_probs=37.2
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCCCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPR 43 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~~r 43 (268)
+|||||+|.+.++|+.|| .|+|..|+|+.|.|+++.....
T Consensus 57 ~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~~ 96 (104)
T 1wi8_A 57 KGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVADQAQD 96 (104)
T ss_dssp CSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEECCCCCC
T ss_pred CeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEccCCCC
Confidence 689999999999999999 9999999999999999986543
No 50
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.49 E-value=2.1e-07 Score=70.29 Aligned_cols=40 Identities=35% Similarity=0.576 Sum_probs=37.5
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~~ 42 (268)
+|||||+|.+.++|+.||..|+|..|.|+.|.|+++....
T Consensus 55 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 94 (103)
T 2cqi_A 55 DPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPS 94 (103)
T ss_dssp CCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCTT
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCCCc
Confidence 6899999999999999999999999999999999998643
No 51
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.49 E-value=1.6e-07 Score=70.93 Aligned_cols=40 Identities=30% Similarity=0.432 Sum_probs=37.4
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~~ 42 (268)
+|||||+|.+.++|+.||..|+|..|+|+.|.|+++....
T Consensus 57 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 96 (103)
T 2cq0_A 57 KGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPST 96 (103)
T ss_dssp EEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCC
T ss_pred eeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECCCCC
Confidence 5899999999999999999999999999999999998654
No 52
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=98.49 E-value=2.8e-07 Score=69.42 Aligned_cols=42 Identities=55% Similarity=0.886 Sum_probs=38.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCCCC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPR 43 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~~r 43 (268)
.+|||||+|.+.++|+.||..|+|..|+|+.|.|+++.....
T Consensus 36 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 77 (101)
T 2hvz_A 36 PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR 77 (101)
T ss_dssp SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCC
T ss_pred CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCC
Confidence 379999999999999999999999999999999999987653
No 53
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.49 E-value=2.7e-07 Score=69.16 Aligned_cols=41 Identities=27% Similarity=0.302 Sum_probs=38.1
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCCC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~~ 42 (268)
.+|||||+|.+.++|+.||..|+|..|+|+.|.|+++....
T Consensus 49 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 89 (99)
T 1whw_A 49 PKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKK 89 (99)
T ss_dssp CCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCCS
T ss_pred cCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCc
Confidence 36999999999999999999999999999999999998654
No 54
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=98.49 E-value=1.3e-07 Score=68.30 Aligned_cols=39 Identities=31% Similarity=0.598 Sum_probs=36.9
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~ 41 (268)
+|||||+|.+.++|+.||..|+|..|+|+.|.|.++...
T Consensus 43 ~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 43 RGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred cceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 689999999999999999999999999999999999754
No 55
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=98.48 E-value=1.1e-07 Score=73.80 Aligned_cols=39 Identities=21% Similarity=0.394 Sum_probs=36.8
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~ 41 (268)
+|||||+|.+.++|+.||..|+|.+|+|+.|.|.++...
T Consensus 45 kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 45 KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp EEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 689999999999999999999999999999999998754
No 56
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.48 E-value=1.7e-07 Score=70.88 Aligned_cols=40 Identities=48% Similarity=0.801 Sum_probs=37.6
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~~ 42 (268)
+|||||+|.+.++|+.||..|+|..|+|+.|.|+++....
T Consensus 55 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 94 (103)
T 2dnm_A 55 RGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARYGR 94 (103)
T ss_dssp CSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECSSCC
T ss_pred CeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECCcCC
Confidence 6999999999999999999999999999999999998643
No 57
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=98.48 E-value=3.4e-07 Score=70.57 Aligned_cols=40 Identities=28% Similarity=0.529 Sum_probs=37.6
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~~ 42 (268)
+|||||+|.+.++|+.||..|+|..|+|+.|.|+++....
T Consensus 57 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 96 (115)
T 2dgo_A 57 KGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKP 96 (115)
T ss_dssp EEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCC
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccCCC
Confidence 5899999999999999999999999999999999998654
No 58
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.48 E-value=2.2e-07 Score=70.21 Aligned_cols=40 Identities=35% Similarity=0.532 Sum_probs=37.6
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~~ 42 (268)
+|||||+|.+.++|+.||..|+|..|+|+.|.|+++....
T Consensus 55 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 94 (103)
T 2d9p_A 55 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 94 (103)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSSCC
T ss_pred CEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEecccc
Confidence 6899999999999999999999999999999999998654
No 59
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.48 E-value=1.5e-07 Score=70.53 Aligned_cols=41 Identities=37% Similarity=0.566 Sum_probs=38.1
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCCC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~~ 42 (268)
.+|||||+|.+.++|+.||..|+|..|+|+.|.|+++....
T Consensus 48 ~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~ 88 (97)
T 1x5p_A 48 PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 88 (97)
T ss_dssp TTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCC
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCC
Confidence 47999999999999999999999999999999999997653
No 60
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.48 E-value=1.4e-07 Score=70.97 Aligned_cols=40 Identities=25% Similarity=0.539 Sum_probs=37.4
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~~ 42 (268)
+|||||+|.+.++|+.||..|+|..|+|+.|.|+++....
T Consensus 58 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 97 (100)
T 2do4_A 58 KGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNSGP 97 (100)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCCCS
T ss_pred EeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCC
Confidence 5899999999999999999999999999999999998654
No 61
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.47 E-value=1.3e-07 Score=70.19 Aligned_cols=37 Identities=24% Similarity=0.383 Sum_probs=35.4
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEecc
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 39 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~ 39 (268)
+|||||+|.+.++|+.||..|+|..|+|+.|.|++++
T Consensus 58 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ak 94 (94)
T 2e5h_A 58 KGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIAI 94 (94)
T ss_dssp TTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred ccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEecC
Confidence 6899999999999999999999999999999999974
No 62
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=98.47 E-value=4.9e-08 Score=72.36 Aligned_cols=39 Identities=18% Similarity=0.225 Sum_probs=34.1
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~ 41 (268)
+|||||+|.+.++|+.||+.|+|.+|+|+.|.|.++...
T Consensus 45 kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~~ 83 (90)
T 3p5t_L 45 KGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSNKL 83 (90)
T ss_dssp EEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC---
T ss_pred CcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECCCC
Confidence 689999999999999999999999999999999998754
No 63
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=98.47 E-value=1.8e-07 Score=69.94 Aligned_cols=39 Identities=23% Similarity=0.462 Sum_probs=37.1
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~ 41 (268)
+|||||+|.+.++|+.||..|+|..|+|+.|.|+++...
T Consensus 44 ~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 82 (96)
T 2x1f_A 44 KGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSNS 82 (96)
T ss_dssp CSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCS
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCCC
Confidence 699999999999999999999999999999999999754
No 64
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=98.47 E-value=1.9e-07 Score=68.15 Aligned_cols=39 Identities=28% Similarity=0.611 Sum_probs=36.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 40 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~ 40 (268)
.+|||||+|.+.++|+.||..|+|..|+|+.|.|+++..
T Consensus 46 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 84 (88)
T 4a8x_A 46 SKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLA 84 (88)
T ss_dssp ECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECC
T ss_pred CCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECCC
Confidence 478999999999999999999999999999999999964
No 65
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=98.47 E-value=1.1e-07 Score=70.17 Aligned_cols=39 Identities=21% Similarity=0.315 Sum_probs=36.8
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 40 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~ 40 (268)
.+|||||+|.+.++|+.||+.|+|.+|+|+.|.|+++..
T Consensus 39 ~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 39 NKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp GGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 379999999999999999999999999999999999864
No 66
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=98.47 E-value=1.2e-07 Score=71.35 Aligned_cols=37 Identities=35% Similarity=0.512 Sum_probs=35.3
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEecc
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 39 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~ 39 (268)
+|||||+|.+.++|+.||+.|+|..|.|+.|.|++++
T Consensus 63 ~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 63 KGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFAT 99 (99)
T ss_dssp EEEEEEEBSSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred eeEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEecC
Confidence 5899999999999999999999999999999999874
No 67
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=98.46 E-value=1.5e-07 Score=71.31 Aligned_cols=38 Identities=26% Similarity=0.415 Sum_probs=36.1
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecC-cceEEEeccC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDG-SRIIVEFARG 40 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~G-r~IrVe~a~~ 40 (268)
+|||||+|.+.++|+.||..|||..|.| +.|.|.++..
T Consensus 54 kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a~~ 92 (100)
T 3ns6_A 54 KGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTMKD 92 (100)
T ss_dssp CSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEESHH
T ss_pred ceEEEEEECCHHHHHHHHHHhCCcccCCCeEEEEEECch
Confidence 6999999999999999999999999999 9999999863
No 68
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=98.46 E-value=1.3e-07 Score=69.75 Aligned_cols=40 Identities=28% Similarity=0.448 Sum_probs=37.4
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~~ 42 (268)
+|||||+|.+.++|+.||..|+|..|+|+.|.|+++....
T Consensus 48 ~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 87 (92)
T 2dgv_A 48 KGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNAS 87 (92)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSCCS
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCC
Confidence 6899999999999999999999999999999999998543
No 69
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=98.46 E-value=9.3e-08 Score=72.45 Aligned_cols=39 Identities=38% Similarity=0.580 Sum_probs=35.7
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCC----eecCcceEEEeccC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGR----DVDGSRIIVEFARG 40 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~----~l~Gr~IrVe~a~~ 40 (268)
.+|||||+|.+.++|+.||+.|+|. .|+|+.|.|++|+.
T Consensus 52 srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~Aks 94 (95)
T 2lkz_A 52 NRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFAKS 94 (95)
T ss_dssp CSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEEEECCC
T ss_pred CceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEEEEccC
Confidence 3799999999999999999999997 48999999999863
No 70
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=98.46 E-value=1.9e-07 Score=71.61 Aligned_cols=40 Identities=30% Similarity=0.508 Sum_probs=37.5
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~ 41 (268)
.+|||||+|.+.++|+.||..|+|..|+|+.|.|+++...
T Consensus 61 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 100 (110)
T 1wf1_A 61 HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEP 100 (110)
T ss_dssp ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCC
T ss_pred eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 4799999999999999999999999999999999999754
No 71
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.46 E-value=2.2e-07 Score=69.48 Aligned_cols=40 Identities=33% Similarity=0.598 Sum_probs=37.3
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~~ 42 (268)
+|||||+|.+.++|+.||..|+|..|+|+.|.|.++....
T Consensus 50 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 89 (98)
T 2cpf_A 50 MGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERAT 89 (98)
T ss_dssp EEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECSSCSS
T ss_pred ccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEccCCC
Confidence 5899999999999999999999999999999999998654
No 72
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.46 E-value=1.6e-07 Score=71.51 Aligned_cols=39 Identities=31% Similarity=0.432 Sum_probs=37.1
Q ss_pred CeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCCC
Q 024424 4 DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (268)
Q Consensus 4 GfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~~ 42 (268)
|||||+|.+.++|..||+.|+|.+|.|+.|+|.+++...
T Consensus 47 G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~s 85 (96)
T 2diu_A 47 CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKNR 85 (96)
T ss_dssp TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCSC
T ss_pred CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCCc
Confidence 899999999999999999999999999999999998654
No 73
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.45 E-value=3.3e-07 Score=69.26 Aligned_cols=40 Identities=40% Similarity=0.601 Sum_probs=37.7
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~~ 42 (268)
+|||||+|.+.++|+.||..|+|..|+|+.|.|+++....
T Consensus 55 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 94 (103)
T 2cq3_A 55 KGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARV 94 (103)
T ss_dssp CCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCSSC
T ss_pred cEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcccCC
Confidence 7899999999999999999999999999999999998654
No 74
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=98.45 E-value=1.6e-07 Score=72.40 Aligned_cols=38 Identities=29% Similarity=0.260 Sum_probs=36.2
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 40 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~ 40 (268)
+|||||+|.+.++|++||..|||.+|+|+.|.|.++..
T Consensus 56 ~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 56 AVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNL 93 (105)
T ss_dssp SEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCH
T ss_pred cEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCH
Confidence 69999999999999999999999999999999999863
No 75
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.44 E-value=2.2e-07 Score=70.34 Aligned_cols=39 Identities=23% Similarity=0.478 Sum_probs=36.5
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~~ 42 (268)
+|||||+|.+.++|+.|| .|+|.+|+|+.|.|+++....
T Consensus 56 ~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~ 94 (103)
T 2dng_A 56 KGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAEGRK 94 (103)
T ss_dssp EEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEECCCCC
T ss_pred ceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEecCCC
Confidence 589999999999999999 999999999999999998654
No 76
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.44 E-value=2e-07 Score=71.99 Aligned_cols=40 Identities=33% Similarity=0.439 Sum_probs=37.6
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~~ 42 (268)
+|||||+|.+.++|+.||..|+|..|+|+.|.|.++....
T Consensus 64 ~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 64 DGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTT 103 (112)
T ss_dssp TCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCSCC
T ss_pred CEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCC
Confidence 7999999999999999999999999999999999997643
No 77
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.44 E-value=1.4e-07 Score=69.99 Aligned_cols=38 Identities=42% Similarity=0.615 Sum_probs=36.0
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 40 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~ 40 (268)
+|||||+|.+.++|+.||..|+|..|+|+.|.|++++.
T Consensus 57 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 94 (95)
T 2cqc_A 57 RGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGPSS 94 (95)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCSC
T ss_pred ccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEecCC
Confidence 58999999999999999999999999999999999863
No 78
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.43 E-value=4.6e-07 Score=68.68 Aligned_cols=40 Identities=33% Similarity=0.577 Sum_probs=37.6
Q ss_pred CCeEEEEeCCHHHHHHHHHhh-CCCeecCcceEEEeccCCC
Q 024424 3 RDFAFVEFSDPRDADDARYSL-NGRDVDGSRIIVEFARGGP 42 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~l-dG~~l~Gr~IrVe~a~~~~ 42 (268)
+|||||+|.+.++|+.||..| +|..|.|+.|.|+++....
T Consensus 58 ~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~~~~ 98 (107)
T 2cph_A 58 RGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADSEV 98 (107)
T ss_dssp CSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECCCCC
T ss_pred CceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeCCCCC
Confidence 799999999999999999999 9999999999999998653
No 79
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.43 E-value=2.5e-07 Score=70.86 Aligned_cols=40 Identities=28% Similarity=0.558 Sum_probs=37.7
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~~ 42 (268)
+|||||+|.+.++|+.||..|+|.+|+|+.|.|.++....
T Consensus 61 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 100 (109)
T 1x4g_A 61 KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESP 100 (109)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCC
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCC
Confidence 6999999999999999999999999999999999998654
No 80
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.42 E-value=2e-07 Score=69.84 Aligned_cols=39 Identities=26% Similarity=0.513 Sum_probs=36.6
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcc----eEEEeccCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSR----IIVEFARGG 41 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~----IrVe~a~~~ 41 (268)
+|||||+|.+.++|+.||..|+|..|.|.. |.|.++...
T Consensus 52 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a~~~ 94 (99)
T 2div_A 52 AGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYS 94 (99)
T ss_dssp EEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECCEEETTCC
T ss_pred CCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEEEeecCCC
Confidence 489999999999999999999999999999 999999754
No 81
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=98.42 E-value=1.6e-07 Score=69.70 Aligned_cols=37 Identities=22% Similarity=0.279 Sum_probs=35.5
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEecc
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 39 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~ 39 (268)
+|||||+|.+.++|+.||..|+|..|+|+.|.|+++.
T Consensus 57 ~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 57 TGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred eeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 5899999999999999999999999999999999875
No 82
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=98.42 E-value=1.8e-07 Score=69.81 Aligned_cols=41 Identities=29% Similarity=0.471 Sum_probs=36.2
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhC-CCeecCcceEEEeccCCC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLN-GRDVDGSRIIVEFARGGP 42 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ld-G~~l~Gr~IrVe~a~~~~ 42 (268)
.+|||||+|.+.++|+.||+.|+ +..|+|+.|.|+++...+
T Consensus 43 ~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~~~~ 84 (91)
T 2lxi_A 43 SRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSDPKP 84 (91)
T ss_dssp CSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCCSCC
T ss_pred cCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcCCCC
Confidence 46999999999999999999875 568999999999997654
No 83
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.42 E-value=1.5e-07 Score=72.41 Aligned_cols=36 Identities=31% Similarity=0.429 Sum_probs=34.8
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEec
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 38 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a 38 (268)
+|||||+|.+.++|++||..|||..|+|+.|.|+++
T Consensus 68 ~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 68 VGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELS 103 (104)
T ss_dssp EEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEEC
T ss_pred cEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEc
Confidence 799999999999999999999999999999999986
No 84
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.42 E-value=2e-07 Score=68.85 Aligned_cols=39 Identities=28% Similarity=0.437 Sum_probs=36.4
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~~ 42 (268)
+|||||+|.+.++|+.||. |+|..|.|+.|.|.++...+
T Consensus 50 ~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~~~~ 88 (91)
T 2dgw_A 50 TGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREKSGP 88 (91)
T ss_dssp EEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEESSCC
T ss_pred ceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECCcCC
Confidence 6899999999999999999 99999999999999997654
No 85
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.42 E-value=2.2e-07 Score=69.78 Aligned_cols=40 Identities=23% Similarity=0.401 Sum_probs=37.5
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~~ 42 (268)
+|||||+|.+.++|+.||..|+|..|+|+.|.|+++....
T Consensus 51 kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpj_A 51 KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSA 90 (99)
T ss_dssp TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCS
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCC
Confidence 6999999999999999999999999999999999998543
No 86
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.41 E-value=2.2e-07 Score=71.86 Aligned_cols=39 Identities=26% Similarity=0.199 Sum_probs=36.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 40 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~ 40 (268)
.+|||||+|.+.++|+.||..|||..|+|+.|.|+|+..
T Consensus 45 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 45 GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 368999999999999999999999999999999999974
No 87
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=98.41 E-value=2.8e-07 Score=68.72 Aligned_cols=39 Identities=26% Similarity=0.366 Sum_probs=37.0
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~ 41 (268)
+|||||+|.+.++|+.||..|+|..|+|+.|.|+++...
T Consensus 51 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 89 (97)
T 1nu4_A 51 RGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTD 89 (97)
T ss_dssp TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSSC
T ss_pred CcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEccCC
Confidence 699999999999999999999999999999999999754
No 88
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=98.41 E-value=1.8e-07 Score=69.53 Aligned_cols=38 Identities=32% Similarity=0.386 Sum_probs=36.0
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 40 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~ 40 (268)
+|||||+|.+.++|+.||..|+|..|+|+.|.|++++.
T Consensus 57 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 94 (95)
T 2ywk_A 57 KSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPSS 94 (95)
T ss_dssp EEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcCC
Confidence 68999999999999999999999999999999999863
No 89
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=98.41 E-value=1.9e-07 Score=72.11 Aligned_cols=40 Identities=30% Similarity=0.508 Sum_probs=37.3
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~~ 42 (268)
+|||||+|.+.++|+.||+.|+|.+|+|+.|.|+++....
T Consensus 67 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 106 (115)
T 2cpz_A 67 KCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKN 106 (115)
T ss_dssp EEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCCCSC
T ss_pred CccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCCC
Confidence 5899999999999999999999999999999999998543
No 90
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.41 E-value=2.2e-07 Score=71.44 Aligned_cols=38 Identities=42% Similarity=0.657 Sum_probs=36.5
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 40 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~ 40 (268)
+|||||+|.+.++|+.||..|+|..|+|+.|.|+++..
T Consensus 69 kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 106 (109)
T 2err_A 69 KGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 106 (109)
T ss_dssp TTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 79999999999999999999999999999999999874
No 91
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.41 E-value=2.1e-07 Score=67.73 Aligned_cols=37 Identities=30% Similarity=0.454 Sum_probs=35.2
Q ss_pred CCeEEEEeCCHHHHHHHHHhh-CCCeecCcceEEEecc
Q 024424 3 RDFAFVEFSDPRDADDARYSL-NGRDVDGSRIIVEFAR 39 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~l-dG~~l~Gr~IrVe~a~ 39 (268)
+|||||+|.+.++|+.||..| +|..|+|+.|.|++++
T Consensus 48 kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 48 QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 699999999999999999999 9999999999999974
No 92
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=98.41 E-value=2.1e-07 Score=70.59 Aligned_cols=39 Identities=28% Similarity=0.486 Sum_probs=36.9
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~ 41 (268)
+|||||+|.+.++|+.||..|+|..|+|+.|.|+++...
T Consensus 65 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 103 (106)
T 1p27_B 65 KGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVR 103 (106)
T ss_dssp EEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESEES
T ss_pred eeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeecCC
Confidence 589999999999999999999999999999999999754
No 93
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=98.41 E-value=2.5e-07 Score=71.30 Aligned_cols=40 Identities=25% Similarity=0.435 Sum_probs=37.6
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~~ 42 (268)
+|||||+|.+.++|+.||..|+|..|+|+.|.|+++....
T Consensus 65 kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 104 (108)
T 2jvo_A 65 NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLPA 104 (108)
T ss_dssp TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCCC
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCC
Confidence 7999999999999999999999999999999999998643
No 94
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.40 E-value=5.5e-07 Score=67.47 Aligned_cols=40 Identities=28% Similarity=0.457 Sum_probs=36.8
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCCC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~~ 42 (268)
.+|||||+|.+.++|+.||. |+|..|+|+.|.|.++....
T Consensus 51 ~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a~~~~ 90 (99)
T 2dgs_A 51 PRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAEPRD 90 (99)
T ss_dssp CCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEECCCCC
T ss_pred CCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEECCCCc
Confidence 36999999999999999998 99999999999999998643
No 95
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=98.40 E-value=2.6e-07 Score=71.16 Aligned_cols=37 Identities=24% Similarity=0.405 Sum_probs=35.5
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEecc
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 39 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~ 39 (268)
+|||||+|.+.++|++||..|||..|+|+.|.|.++.
T Consensus 59 ~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 59 CGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCD 95 (105)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred cEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeC
Confidence 6999999999999999999999999999999999875
No 96
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=98.39 E-value=2.3e-07 Score=70.49 Aligned_cols=37 Identities=27% Similarity=0.286 Sum_probs=35.5
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEecc
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 39 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~ 39 (268)
+|||||+|.+.++|+.||..|+|.+|+|+.|.|+++.
T Consensus 70 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 70 LGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 6899999999999999999999999999999999985
No 97
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=98.39 E-value=2.4e-07 Score=69.98 Aligned_cols=38 Identities=32% Similarity=0.446 Sum_probs=35.8
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~ 41 (268)
+|||||+|.+.++|+.|| .|+|..|+|+.|.|+++...
T Consensus 61 ~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~a~~~ 98 (100)
T 2j76_E 61 KGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDVADQA 98 (100)
T ss_dssp CSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEECCCS
T ss_pred CeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEeccCC
Confidence 699999999999999999 99999999999999998753
No 98
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=98.39 E-value=3.2e-07 Score=70.13 Aligned_cols=39 Identities=28% Similarity=0.485 Sum_probs=37.0
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~ 41 (268)
+|||||+|.+.++|+.||..|+|..|+|+.|.|+++...
T Consensus 68 ~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 106 (110)
T 1oo0_B 68 KGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVK 106 (110)
T ss_dssp CSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEES
T ss_pred ceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEcccC
Confidence 699999999999999999999999999999999999754
No 99
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=98.38 E-value=3.4e-07 Score=72.14 Aligned_cols=41 Identities=37% Similarity=0.566 Sum_probs=38.1
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCCC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~~ 42 (268)
.+|||||+|.+.++|+.||..|+|.+|+|+.|.|.++....
T Consensus 72 ~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~ 112 (121)
T 2bz2_A 72 PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 112 (121)
T ss_dssp TTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSC
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCC
Confidence 47999999999999999999999999999999999998543
No 100
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=98.38 E-value=2.5e-07 Score=70.63 Aligned_cols=39 Identities=23% Similarity=0.394 Sum_probs=36.7
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCc-ceEEEeccCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGS-RIIVEFARGG 41 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr-~IrVe~a~~~ 41 (268)
+|||||+|.+.++|+.||..|+|..|.|+ .|.|.++...
T Consensus 61 ~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 61 KGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLFTDF 100 (105)
T ss_dssp CCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEECSCCC
T ss_pred eeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEEEcchH
Confidence 69999999999999999999999999998 9999998753
No 101
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=98.38 E-value=1.9e-07 Score=70.34 Aligned_cols=39 Identities=10% Similarity=0.272 Sum_probs=36.6
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 40 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~ 40 (268)
.+|||||+|.+.++|+.||..|+|..|+|+.|.|.+++.
T Consensus 62 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 62 EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 479999999999999999999999999999999999863
No 102
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=98.37 E-value=3.1e-07 Score=73.05 Aligned_cols=40 Identities=43% Similarity=0.674 Sum_probs=37.3
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~ 41 (268)
.+|||||+|.+.++|+.||..|+|..|+|+.|.|+++...
T Consensus 87 ~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~~~ 126 (129)
T 2kxn_B 87 SRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITK 126 (129)
T ss_dssp CCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCSSS
T ss_pred cceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCC
Confidence 3689999999999999999999999999999999999754
No 103
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=98.37 E-value=7.9e-07 Score=67.36 Aligned_cols=41 Identities=20% Similarity=0.256 Sum_probs=37.4
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCee---cCcceEEEeccCCC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDV---DGSRIIVEFARGGP 42 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l---~Gr~IrVe~a~~~~ 42 (268)
.+|||||+|.+.++|+.||..|+|..| .|+.|.|.++....
T Consensus 54 ~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~ 97 (106)
T 2dgp_A 54 HKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSES 97 (106)
T ss_dssp CCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECCCCS
T ss_pred cceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEECCccc
Confidence 369999999999999999999999998 89999999998654
No 104
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.37 E-value=9e-07 Score=68.32 Aligned_cols=39 Identities=31% Similarity=0.414 Sum_probs=36.0
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~ 41 (268)
.+|||||+|.+.++|+.||..|++ +|+|+.|.|+++...
T Consensus 58 ~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a~~~ 96 (116)
T 2cqd_A 58 SRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLAYLG 96 (116)
T ss_dssp CCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEESTTT
T ss_pred cceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEcccC
Confidence 368999999999999999999998 899999999999754
No 105
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.36 E-value=3.3e-07 Score=72.09 Aligned_cols=40 Identities=18% Similarity=0.458 Sum_probs=36.4
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCee-----cCcceEEEeccCCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDV-----DGSRIIVEFARGGP 42 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l-----~Gr~IrVe~a~~~~ 42 (268)
+|||||+|++.++|++||+.|||.+| .|..|.|.++...+
T Consensus 63 rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~~~p 107 (114)
T 2cq2_A 63 KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEKVQ 107 (114)
T ss_dssp CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEESCCC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEecccCc
Confidence 68999999999999999999999998 68899999997544
No 106
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=98.36 E-value=5.2e-07 Score=68.25 Aligned_cols=40 Identities=33% Similarity=0.475 Sum_probs=37.2
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecC---cceEEEeccCCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDG---SRIIVEFARGGP 42 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~G---r~IrVe~a~~~~ 42 (268)
+|||||+|.+.++|+.||..|+|..|.| +.|.|.++....
T Consensus 56 ~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~~~~ 98 (105)
T 2dnh_A 56 KGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDK 98 (105)
T ss_dssp EEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEESCSSC
T ss_pred CcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEECccCc
Confidence 6899999999999999999999999998 999999998654
No 107
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.36 E-value=3.1e-07 Score=72.06 Aligned_cols=37 Identities=22% Similarity=0.247 Sum_probs=35.7
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEecc
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 39 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~ 39 (268)
+|||||+|.+.++|++||..|||.+|+|+.|.|+++.
T Consensus 55 ~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~ 91 (114)
T 3s6e_A 55 QGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVP 91 (114)
T ss_dssp TCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred cEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEc
Confidence 6999999999999999999999999999999999975
No 108
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.35 E-value=3.3e-07 Score=69.13 Aligned_cols=39 Identities=31% Similarity=0.521 Sum_probs=36.9
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~ 41 (268)
+|||||+|.+.++|+.||..|+|..|+|+.|.|.++...
T Consensus 50 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 88 (104)
T 1p1t_A 50 KGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASE 88 (104)
T ss_dssp EEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTCT
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCCc
Confidence 689999999999999999999999999999999999754
No 109
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.35 E-value=2.7e-07 Score=71.03 Aligned_cols=39 Identities=23% Similarity=0.194 Sum_probs=35.3
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCC--eecCcceEEEeccCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGR--DVDGSRIIVEFARGG 41 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~--~l~Gr~IrVe~a~~~ 41 (268)
+|||||+|++.++|+.||+.|++. +|.|+.|.|+++...
T Consensus 52 kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 92 (102)
T 1x4d_A 52 INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKY 92 (102)
T ss_dssp SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCC
T ss_pred CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCC
Confidence 589999999999999999998864 599999999999854
No 110
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=98.34 E-value=3.8e-07 Score=70.15 Aligned_cols=39 Identities=28% Similarity=0.453 Sum_probs=36.6
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~ 41 (268)
+|||||+|.+.++|+.||..|+|..|+|+.|.|+++...
T Consensus 68 ~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~k 106 (108)
T 2jrs_A 68 KGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 106 (108)
T ss_dssp EEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSCSS
T ss_pred ceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcccC
Confidence 589999999999999999999999999999999998743
No 111
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.34 E-value=4.9e-07 Score=68.30 Aligned_cols=40 Identities=18% Similarity=0.301 Sum_probs=37.2
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCe-ecCcceEEEeccCCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRD-VDGSRIIVEFARGGP 42 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~-l~Gr~IrVe~a~~~~ 42 (268)
+|||||+|.+.++|+.||..|+|.. |+|+.|.|+++....
T Consensus 51 ~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~~~~ 91 (104)
T 2dhg_A 51 KGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKA 91 (104)
T ss_dssp EEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBCCCCC
T ss_pred cceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEccCCC
Confidence 6899999999999999999999999 999999999997543
No 112
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.33 E-value=4.7e-07 Score=68.97 Aligned_cols=41 Identities=37% Similarity=0.465 Sum_probs=37.0
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhC--CCeecCcceEEEeccCCC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLN--GRDVDGSRIIVEFARGGP 42 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ld--G~~l~Gr~IrVe~a~~~~ 42 (268)
.+|||||+|.+.++|+.||..|+ +..|+|+.|.|+++....
T Consensus 51 ~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a~~~~ 93 (109)
T 2dis_A 51 NRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEI 93 (109)
T ss_dssp TCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEESCSSC
T ss_pred cCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEEEcCCCC
Confidence 37999999999999999999996 599999999999997543
No 113
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.33 E-value=9.1e-07 Score=67.46 Aligned_cols=41 Identities=22% Similarity=0.369 Sum_probs=37.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhC------CCeecCcceEEEeccCCC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLN------GRDVDGSRIIVEFARGGP 42 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ld------G~~l~Gr~IrVe~a~~~~ 42 (268)
.+|||||+|.+.++|+.||..|+ |..|+|+.|.|.++....
T Consensus 56 ~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a~~~~ 102 (111)
T 1x4h_A 56 SKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTRD 102 (111)
T ss_dssp BCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCCCCC
T ss_pred CccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEEEEECCCCc
Confidence 37999999999999999999999 999999999999998653
No 114
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=98.33 E-value=3.4e-07 Score=75.37 Aligned_cols=38 Identities=18% Similarity=0.232 Sum_probs=36.1
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 40 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~ 40 (268)
+|||||+|.+.++|+.||..|||.+|+|+.|.|.++..
T Consensus 99 kGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a~~ 136 (156)
T 3n9u_C 99 KGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPATR 136 (156)
T ss_dssp EEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEECCH
T ss_pred ceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEcCC
Confidence 68999999999999999999999999999999999863
No 115
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=97.68 E-value=6.2e-08 Score=75.07 Aligned_cols=41 Identities=32% Similarity=0.446 Sum_probs=38.0
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCCCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPR 43 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~~r 43 (268)
+|||||+|.+.++|+.||..|+|..|+|+.|.|+++.....
T Consensus 57 ~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 57 KGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATRRAD 97 (116)
Confidence 68999999999999999999999999999999999986543
No 116
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.33 E-value=1.3e-06 Score=67.05 Aligned_cols=39 Identities=21% Similarity=0.221 Sum_probs=36.6
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~ 41 (268)
+|||||+|.+.++|+.||..|+|.+|+|+.|.|+++...
T Consensus 56 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 94 (114)
T 2do0_A 56 RGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERA 94 (114)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCC
T ss_pred eeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcccC
Confidence 589999999999999999999999999999999998743
No 117
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.32 E-value=3.2e-07 Score=71.09 Aligned_cols=40 Identities=18% Similarity=0.298 Sum_probs=36.0
Q ss_pred CCeEEEEeCCHHHHHHHHHhhC--CCeecCcceEEEeccCCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLN--GRDVDGSRIIVEFARGGP 42 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ld--G~~l~Gr~IrVe~a~~~~ 42 (268)
+|||||+|++.++|+.||+.|+ +.+|+|+.|.|+++....
T Consensus 52 kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~~ 93 (105)
T 1sjq_A 52 KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKE 93 (105)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSSS
T ss_pred CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCCC
Confidence 6999999999999999999886 479999999999997543
No 118
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=98.31 E-value=5.3e-07 Score=65.98 Aligned_cols=38 Identities=29% Similarity=0.433 Sum_probs=35.8
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~ 41 (268)
+|||||+|.+.++|+.|| .|+|..|+|+.|.|++++..
T Consensus 48 ~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~~ 85 (89)
T 3ucg_A 48 KGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRTN 85 (89)
T ss_dssp CEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTTT
T ss_pred ceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccCC
Confidence 689999999999999999 99999999999999999753
No 119
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.31 E-value=7.1e-07 Score=68.33 Aligned_cols=39 Identities=13% Similarity=0.189 Sum_probs=35.5
Q ss_pred CCeEEEEeCCHHHHHHHHHhh--CCCeecCcceEEEeccCC
Q 024424 3 RDFAFVEFSDPRDADDARYSL--NGRDVDGSRIIVEFARGG 41 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~l--dG~~l~Gr~IrVe~a~~~ 41 (268)
+|||||+|++.++|+.||+.| ++.+|.|+.|.|+++...
T Consensus 51 kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 91 (101)
T 2cq1_A 51 KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHK 91 (101)
T ss_dssp TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCS
T ss_pred CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCcc
Confidence 699999999999999999976 578899999999999854
No 120
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.30 E-value=4.7e-07 Score=71.38 Aligned_cols=37 Identities=32% Similarity=0.398 Sum_probs=35.3
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEecc
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 39 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~ 39 (268)
+|||||+|.+.++|++||..|||.+|+|+.|.|.++.
T Consensus 71 ~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~ 107 (118)
T 3ue2_A 71 IVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 107 (118)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred eEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcC
Confidence 4899999999999999999999999999999999975
No 121
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.30 E-value=6.4e-07 Score=68.30 Aligned_cols=39 Identities=18% Similarity=0.099 Sum_probs=35.5
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~~ 42 (268)
+|||||+|.+.++|+.|| .|++.+|.|+.|.|.++....
T Consensus 55 ~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~~~~~~ 93 (102)
T 1wez_A 55 TGEADVEFATHEDAVAAM-AKDKANMQHRYVELFLNSTAG 93 (102)
T ss_dssp EEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEEECCCC
T ss_pred eeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEECCCCC
Confidence 689999999999999999 689999999999999887544
No 122
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=98.30 E-value=6e-07 Score=70.25 Aligned_cols=40 Identities=23% Similarity=0.222 Sum_probs=37.3
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~ 41 (268)
.+|||||+|.+.++|+.||..|+|..|+|+.|.|+++...
T Consensus 75 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 114 (124)
T 2kt5_A 75 SLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQ 114 (124)
T ss_dssp CCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEECCT
T ss_pred EeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCC
Confidence 4699999999999999999999999999999999999753
No 123
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.29 E-value=3.1e-07 Score=72.08 Aligned_cols=36 Identities=22% Similarity=0.161 Sum_probs=34.6
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEecc
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 39 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~ 39 (268)
+|||||+|.+.++|+.||. |||.+|+|+.|.|.++.
T Consensus 67 ~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~ 102 (124)
T 1wel_A 67 TGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPIT 102 (124)
T ss_dssp EEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEEC
T ss_pred CeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 6899999999999999999 99999999999999986
No 124
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=98.28 E-value=3.2e-07 Score=66.47 Aligned_cols=33 Identities=27% Similarity=0.513 Sum_probs=31.4
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCc-ceEE
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGS-RIIV 35 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr-~IrV 35 (268)
+|||||+|.+.++|+.||..|+|..|+|+ .|.|
T Consensus 47 ~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 47 KGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred eEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 69999999999999999999999999999 8876
No 125
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=98.28 E-value=5.1e-07 Score=69.34 Aligned_cols=39 Identities=26% Similarity=0.342 Sum_probs=35.6
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCe--ecCcceEEEeccC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRD--VDGSRIIVEFARG 40 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~--l~Gr~IrVe~a~~ 40 (268)
.+|||||+|++.++|..||+.|+|.. |.|+.|.|++++.
T Consensus 56 ~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~ 96 (100)
T 3r27_A 56 KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTS 96 (100)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSC
T ss_pred CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEeccc
Confidence 37999999999999999999999875 7899999999874
No 126
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.27 E-value=8.9e-07 Score=69.31 Aligned_cols=39 Identities=18% Similarity=0.134 Sum_probs=35.1
Q ss_pred CCeEEEEeCCHHHHHHHHHhhC--CCeecCcceEEEeccCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLN--GRDVDGSRIIVEFARGG 41 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ld--G~~l~Gr~IrVe~a~~~ 41 (268)
+|||||+|++.++|+.||+.|+ +.+|.|+.|.|+++...
T Consensus 62 kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~ 102 (112)
T 1x4f_A 62 KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKY 102 (112)
T ss_dssp TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSC
T ss_pred CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECccc
Confidence 6999999999999999999885 46799999999999754
No 127
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=98.27 E-value=7.9e-07 Score=68.46 Aligned_cols=38 Identities=29% Similarity=0.405 Sum_probs=36.3
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 40 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~ 40 (268)
+|||||+|.+.++|+.||..|+|..|+|..|.|.++..
T Consensus 47 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 47 RGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp TTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 68999999999999999999999999999999999874
No 128
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.27 E-value=5.1e-07 Score=69.53 Aligned_cols=38 Identities=29% Similarity=0.458 Sum_probs=35.7
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 40 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~ 40 (268)
.+|||||+|.+.++|+.|| .|+|..|+|+.|.|+++..
T Consensus 66 ~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 66 SKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp CCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred cCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 3689999999999999999 9999999999999999874
No 129
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=98.27 E-value=7.9e-07 Score=74.19 Aligned_cols=39 Identities=23% Similarity=0.504 Sum_probs=36.0
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecC--cceEEEeccCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDG--SRIIVEFARGG 41 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~G--r~IrVe~a~~~ 41 (268)
+|||||+|++.++|+.||+.|||.+|.| ..|+|+|++..
T Consensus 84 rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 84 QFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 124 (164)
T ss_dssp CEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSS
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCC
Confidence 5799999999999999999999999966 99999999854
No 130
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=98.27 E-value=6.2e-07 Score=71.87 Aligned_cols=39 Identities=28% Similarity=0.451 Sum_probs=36.9
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~ 41 (268)
+|||||+|.+.++|+.||..|+|..|.|+.|.|.++...
T Consensus 92 ~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 130 (143)
T 3egn_A 92 KGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARSA 130 (143)
T ss_dssp EEEEEEECSSHHHHHHHHHHHTTBEETTEECEEEECCCS
T ss_pred ccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 689999999999999999999999999999999999753
No 131
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=98.26 E-value=6.3e-07 Score=63.64 Aligned_cols=36 Identities=17% Similarity=0.295 Sum_probs=33.3
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEec
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 38 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a 38 (268)
.+|||||+|.+.++|+.||. |+|..|+|+.|.|.+|
T Consensus 40 ~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 40 HRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp SCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred cCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 36899999999999999997 9999999999999875
No 132
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.26 E-value=8.9e-07 Score=70.51 Aligned_cols=39 Identities=33% Similarity=0.486 Sum_probs=35.4
Q ss_pred CCe-EEEEeCCHHHHHHHHHhhCCCeecC--cceEEEeccCC
Q 024424 3 RDF-AFVEFSDPRDADDARYSLNGRDVDG--SRIIVEFARGG 41 (268)
Q Consensus 3 rGf-gFVeF~~~~dA~~Ai~~ldG~~l~G--r~IrVe~a~~~ 41 (268)
.|| |||+|++.++|+.||+.|||.+|.| ..|+|++++..
T Consensus 61 ~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~ 102 (124)
T 2e5i_A 61 NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPT 102 (124)
T ss_dssp SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCS
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCC
Confidence 486 9999999999999999999999998 58999999743
No 133
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=98.26 E-value=9.9e-07 Score=68.79 Aligned_cols=39 Identities=23% Similarity=0.393 Sum_probs=36.3
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~~ 42 (268)
+|||||+|.+.++|+.|| .|+|..|+|+.|.|+++....
T Consensus 78 ~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~ 116 (124)
T 2jwn_A 78 KGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRTNM 116 (124)
T ss_dssp EEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSCCC
T ss_pred ccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCCCC
Confidence 689999999999999999 899999999999999998543
No 134
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=98.26 E-value=7.4e-07 Score=64.89 Aligned_cols=34 Identities=24% Similarity=0.502 Sum_probs=32.5
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEe
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 37 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~ 37 (268)
+|||||+|.+.++|+.|| .|+|..|+|+.|.|+.
T Consensus 53 kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~r 86 (87)
T 2hzc_A 53 KNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRR 86 (87)
T ss_dssp SSEEEEEESSHHHHHHHG-GGTTCEETTEECEEEC
T ss_pred CcEEEEEcCCHHHHHHHH-hcCCCEECCeEEEEeC
Confidence 799999999999999999 9999999999999974
No 135
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.25 E-value=6.6e-07 Score=68.80 Aligned_cols=39 Identities=15% Similarity=0.250 Sum_probs=35.2
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCC--eecCcceEEEeccCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGR--DVDGSRIIVEFARGG 41 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~--~l~Gr~IrVe~a~~~ 41 (268)
+|||||+|++.++|+.||+.|++. +|+|+.|.|+++...
T Consensus 51 kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~ 91 (104)
T 1wex_A 51 KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSK 91 (104)
T ss_dssp TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSS
T ss_pred CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCc
Confidence 699999999999999999998764 599999999999754
No 136
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.24 E-value=7.9e-07 Score=70.33 Aligned_cols=40 Identities=18% Similarity=0.298 Sum_probs=36.1
Q ss_pred CCeEEEEeCCHHHHHHHHHhhC--CCeecCcceEEEeccCCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLN--GRDVDGSRIIVEFARGGP 42 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ld--G~~l~Gr~IrVe~a~~~~ 42 (268)
+|||||+|++.++|+.||+.|+ +.+|.|+.|.|+++....
T Consensus 67 kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~ 108 (119)
T 2ad9_A 67 KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKE 108 (119)
T ss_dssp GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSSS
T ss_pred CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCCC
Confidence 6999999999999999999987 478999999999997543
No 137
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=98.24 E-value=6.5e-07 Score=65.82 Aligned_cols=38 Identities=29% Similarity=0.393 Sum_probs=34.2
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~ 41 (268)
+|||||+|.+.+ |+.||..|+|..|+|+.|.|+++...
T Consensus 43 ~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 43 KGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp CEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred ceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 689999999999 99999999999999999999999754
No 138
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=98.23 E-value=9.7e-07 Score=70.93 Aligned_cols=39 Identities=26% Similarity=0.622 Sum_probs=36.0
Q ss_pred CCe-EEEEeCCHHHHHHHHHhhCCCeecC--cceEEEeccCC
Q 024424 3 RDF-AFVEFSDPRDADDARYSLNGRDVDG--SRIIVEFARGG 41 (268)
Q Consensus 3 rGf-gFVeF~~~~dA~~Ai~~ldG~~l~G--r~IrVe~a~~~ 41 (268)
+|| |||+|.+.++|+.||+.|||.+|.| ..|+|+|++..
T Consensus 65 ~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 65 NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 106 (130)
T ss_dssp TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCS
T ss_pred CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCC
Confidence 578 9999999999999999999999998 89999999743
No 139
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=98.23 E-value=7.1e-07 Score=71.44 Aligned_cols=41 Identities=46% Similarity=0.744 Sum_probs=37.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCCC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~~ 42 (268)
.+|||||+|.+.++|+.||..|+|..|+|+.|.|+++....
T Consensus 88 ~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~ 128 (135)
T 2lea_A 88 SRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 128 (135)
T ss_dssp CCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCC
T ss_pred cceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 36899999999999999999999999999999999998543
No 140
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=98.22 E-value=5.5e-07 Score=71.38 Aligned_cols=40 Identities=38% Similarity=0.594 Sum_probs=37.0
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCC----eecCcceEEEeccCCC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGR----DVDGSRIIVEFARGGP 42 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~----~l~Gr~IrVe~a~~~~ 42 (268)
.+|||||+|.+. +|+.||..|+|. +|+|+.|.|+++....
T Consensus 66 ~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a~~~~ 109 (131)
T 2m2b_A 66 NRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTINVEFAKGSK 109 (131)
T ss_dssp BCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCCCEECCCSC
T ss_pred cceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEEEEECCCCC
Confidence 479999999999 999999999999 9999999999998643
No 141
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.21 E-value=1.1e-06 Score=68.15 Aligned_cols=37 Identities=22% Similarity=0.143 Sum_probs=34.4
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEecc
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 39 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~ 39 (268)
.+|||||+|.+.++|++|| .|||.+|.|+.|.|..+.
T Consensus 55 ~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 55 NNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp CCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4799999999999999999 799999999999998875
No 142
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.21 E-value=1.6e-06 Score=66.93 Aligned_cols=41 Identities=27% Similarity=0.364 Sum_probs=37.0
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCCCC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPR 43 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~~r 43 (268)
.+|||||+|.+.++|+.||.. +|..|+|+.|.|+++.....
T Consensus 68 ~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~~~~ 108 (116)
T 1x4b_A 68 SRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVAREE 108 (116)
T ss_dssp CCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSSCCC
T ss_pred cCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCCCcc
Confidence 368999999999999999988 99999999999999986543
No 143
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.20 E-value=9.8e-07 Score=67.56 Aligned_cols=37 Identities=16% Similarity=0.231 Sum_probs=34.8
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEecc
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 39 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~ 39 (268)
.+|||||+|.+.++|+.||. |+|.+|+|+.|.|.++.
T Consensus 51 ~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 51 FKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp CCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 47999999999999999998 99999999999999875
No 144
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=98.17 E-value=7.4e-07 Score=77.73 Aligned_cols=38 Identities=18% Similarity=0.271 Sum_probs=35.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEecc
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 39 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~ 39 (268)
.+|||||+|.+.++|++||..|+|.+|+|+.|.|.++.
T Consensus 111 skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~ 148 (229)
T 3q2s_C 111 SKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVN 148 (229)
T ss_dssp EEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEECC
T ss_pred cceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEECC
Confidence 36899999999999999999999999999999999875
No 145
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.17 E-value=8.2e-07 Score=69.34 Aligned_cols=36 Identities=22% Similarity=0.106 Sum_probs=34.2
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEecc
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 39 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~ 39 (268)
+|||||+|.+.++|++||. |+|.+|+|+.|.|.++.
T Consensus 61 ~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~ 96 (118)
T 2db1_A 61 SGEAFVELESEDDVKLALK-KDRESMGHRYIEVFKSH 96 (118)
T ss_dssp EEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEEEEC
T ss_pred CeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEECC
Confidence 6899999999999999999 99999999999999875
No 146
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.16 E-value=3.3e-07 Score=66.69 Aligned_cols=37 Identities=22% Similarity=0.355 Sum_probs=34.3
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEecc
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 39 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~ 39 (268)
+|||||+|.+.++|+.||..|||..|+|+.|+|.+..
T Consensus 47 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 47 KGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 6899999999999999999999999999999887654
No 147
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=98.16 E-value=1.3e-06 Score=74.44 Aligned_cols=38 Identities=21% Similarity=0.413 Sum_probs=36.3
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 40 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~ 40 (268)
+|||||+|.+.++|+.||..|||.+|+|+.|.|.++..
T Consensus 143 ~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 143 KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 68999999999999999999999999999999999874
No 148
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=98.15 E-value=1.7e-06 Score=73.95 Aligned_cols=39 Identities=28% Similarity=0.265 Sum_probs=36.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 40 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~ 40 (268)
++|||||+|.+.++|+.||+.|||.+|.|+.|.|.+++.
T Consensus 41 ~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 41 KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence 479999999999999999999999999999999999864
No 149
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.14 E-value=1.4e-06 Score=61.98 Aligned_cols=35 Identities=29% Similarity=0.418 Sum_probs=33.6
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEec
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 38 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a 38 (268)
+|||||+|.+.++|+.||..|+ ..|+|+.|.|+++
T Consensus 42 ~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 42 RGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp SSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 6899999999999999999999 9999999999987
No 150
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=98.14 E-value=1.2e-06 Score=67.02 Aligned_cols=37 Identities=16% Similarity=0.093 Sum_probs=34.7
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEecc
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 39 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~ 39 (268)
.+|||||+|.+.++|+.||. |+|..|.|+.|.|.++.
T Consensus 54 ~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a~ 90 (107)
T 2lmi_A 54 RRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVYEIN 90 (107)
T ss_dssp TCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCEECC
T ss_pred EeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEEECC
Confidence 47899999999999999999 99999999999999876
No 151
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.12 E-value=1.4e-06 Score=67.37 Aligned_cols=38 Identities=18% Similarity=0.273 Sum_probs=35.2
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 40 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~ 40 (268)
.+|||||+|.+.++|+.||.. +|.+|+|+.|.|.++..
T Consensus 56 ~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a~~ 93 (114)
T 2cpy_A 56 GLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVVTL 93 (114)
T ss_dssp CSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEECH
T ss_pred cceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEECCH
Confidence 479999999999999999987 99999999999999864
No 152
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.11 E-value=4.7e-06 Score=63.71 Aligned_cols=39 Identities=26% Similarity=0.341 Sum_probs=34.1
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCCC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~~ 42 (268)
.+|||||+|++.++|+.||..+++ +.|+.|.|.|+...+
T Consensus 53 ~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 53 KPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQP 91 (100)
T ss_dssp SSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCC
T ss_pred CCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCC
Confidence 579999999999999999998655 679999999998654
No 153
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=98.09 E-value=1.3e-06 Score=70.44 Aligned_cols=36 Identities=22% Similarity=0.117 Sum_probs=34.3
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEecc
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 39 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~ 39 (268)
+|||||+|.+.++|+.||. |+|.+|+|+.|.|.++.
T Consensus 88 rG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~a~ 123 (136)
T 2hgl_A 88 SGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFKSH 123 (136)
T ss_dssp EEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEECC
T ss_pred CeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEECC
Confidence 6899999999999999999 99999999999999875
No 154
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.09 E-value=1.8e-06 Score=65.37 Aligned_cols=39 Identities=28% Similarity=0.368 Sum_probs=35.9
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~~ 42 (268)
+|||||+|.+.++|+.||.. +|..|+|+.|.|+++....
T Consensus 58 ~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a~~~~ 96 (105)
T 2dh8_A 58 RGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPCTPRG 96 (105)
T ss_dssp EEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCSCCSS
T ss_pred ceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEccCCC
Confidence 58999999999999999998 9999999999999997543
No 155
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.09 E-value=3e-06 Score=65.02 Aligned_cols=37 Identities=14% Similarity=0.341 Sum_probs=34.0
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCee--------cCcceEEEecc
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDV--------DGSRIIVEFAR 39 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l--------~Gr~IrVe~a~ 39 (268)
+|||||+|.+.++|+.||..|+|..| .++.|.|.|+.
T Consensus 66 ~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l~v~~a~ 110 (114)
T 1x5o_A 66 RGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFSG 110 (114)
T ss_dssp EEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCBEEEECC
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCceeEEccC
Confidence 58999999999999999999999999 56779999886
No 156
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=98.06 E-value=1.4e-06 Score=64.64 Aligned_cols=41 Identities=27% Similarity=0.679 Sum_probs=29.7
Q ss_pred CccccCCCCCCCCCcccC-------------------CCCCCccccCCCCCccccccCCC
Q 024424 61 GRCFNCGIDGHWARDCKA-------------------GDWKNKCYRCGERGHIERNCQNS 101 (268)
Q Consensus 61 ~rC~~CG~~GH~ardC~~-------------------~~~~~~cyrcg~~GH~~r~c~~s 101 (268)
..||+|+..||++.+|+. +.....||.||..||+..+|+..
T Consensus 6 ~~C~~Cg~~GH~~~~Cp~~~rcY~c~~~gh~~~~c~~p~~~~~CYnCG~~GH~~rdC~~~ 65 (83)
T 3nyb_B 6 VQCTLCKSKKHSKERCPSIWRAYILVDDNEKAKPKVLPFHTIYCYNCGGKGHFGDDCKEK 65 (83)
T ss_dssp -CCSSSCCSSSCGGGCGGGTCCCCBC-------------CCCBCSSSSCBSSCGGGCSSC
T ss_pred CCCCCCCCCCCccccCCCcccccccccCCcccccccCCCCCCeecccCCCCcCcccCCcc
Confidence 457777777777777653 22347899999999999999973
No 157
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.06 E-value=3.2e-06 Score=64.24 Aligned_cols=38 Identities=18% Similarity=0.147 Sum_probs=34.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 40 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~ 40 (268)
.+|||||+|.+.++|+.||.. ++..|.|+.|.|..+..
T Consensus 56 ~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~~~ 93 (104)
T 1wg5_A 56 STGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKSSR 93 (104)
T ss_dssp BCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEECT
T ss_pred cceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEECCH
Confidence 379999999999999999987 99999999999998863
No 158
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.06 E-value=5e-06 Score=61.67 Aligned_cols=38 Identities=21% Similarity=0.258 Sum_probs=35.4
Q ss_pred CeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCC
Q 024424 4 DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (268)
Q Consensus 4 GfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~ 41 (268)
|.|||+|.+.++|+.||..|+|..|+|+.|.|+++...
T Consensus 55 ~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 55 AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 45999999999999999999999999999999999754
No 159
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=98.04 E-value=1.3e-06 Score=70.70 Aligned_cols=40 Identities=20% Similarity=0.070 Sum_probs=36.3
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCCC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~~ 42 (268)
.+|||||+|++.++|++|| .|++.+|.|+.|.|..+....
T Consensus 85 srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~ 124 (139)
T 2hgn_A 85 VTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTG 124 (139)
T ss_dssp SSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSC
T ss_pred CceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCC
Confidence 4799999999999999999 899999999999999887543
No 160
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=98.02 E-value=4.4e-06 Score=64.14 Aligned_cols=39 Identities=26% Similarity=0.316 Sum_probs=35.3
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~ 41 (268)
.+|||||+|.+.++|+.||..| +..|+|+.|.|+++...
T Consensus 66 ~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a~~~ 104 (109)
T 2rs2_A 66 SRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVAFPR 104 (109)
T ss_dssp CTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEECCCC
T ss_pred cCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEccCC
Confidence 3689999999999999999987 59999999999999754
No 161
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=98.01 E-value=3.4e-06 Score=61.51 Aligned_cols=35 Identities=26% Similarity=0.366 Sum_probs=31.9
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEec
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 38 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a 38 (268)
+|||||+|.+.++|+.||. +++.+|+|+.|.|.+|
T Consensus 53 ~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 53 RGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKKA 87 (87)
T ss_dssp EEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEEC
T ss_pred ccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEeC
Confidence 6899999999999999995 5888999999999875
No 162
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.98 E-value=6e-06 Score=61.27 Aligned_cols=36 Identities=22% Similarity=0.273 Sum_probs=33.9
Q ss_pred eEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCC
Q 024424 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (268)
Q Consensus 5 fgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~ 41 (268)
||||+|.+.++|+.||. |+|.+|+|+.|.|.++...
T Consensus 47 ~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~ 82 (94)
T 2e5g_A 47 FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQK 82 (94)
T ss_dssp EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCS
T ss_pred EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcC
Confidence 99999999999999999 9999999999999988643
No 163
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=97.95 E-value=7.9e-06 Score=52.32 Aligned_cols=26 Identities=31% Similarity=0.765 Sum_probs=21.3
Q ss_pred CCCCCCCccccCCCCCCCCCcccCCC
Q 024424 55 GPPPGSGRCFNCGIDGHWARDCKAGD 80 (268)
Q Consensus 55 ~~~~~~~rC~~CG~~GH~ardC~~~~ 80 (268)
+.+.....||+||+.|||+++|+...
T Consensus 5 ~~~~~~~~C~~Cgk~GH~ardCP~~~ 30 (40)
T 1a6b_B 5 RSQLDRDQCAYCKEKGHWAKDCPKKP 30 (40)
T ss_dssp CCSCCSSSCSSSCCTTCCTTSCSSSC
T ss_pred cCCCCCCeeeECCCCCcchhhCcCCc
Confidence 44556689999999999999998764
No 164
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=97.94 E-value=4.8e-06 Score=58.85 Aligned_cols=36 Identities=19% Similarity=0.320 Sum_probs=32.6
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEec
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 38 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a 38 (268)
.+|||||+|.+.++|+.||. +++..|+|+.|.|.++
T Consensus 40 ~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 40 RRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp SCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred cCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 36899999999999999997 4899999999999875
No 165
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.94 E-value=1.1e-05 Score=60.62 Aligned_cols=38 Identities=16% Similarity=0.273 Sum_probs=34.1
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~~ 42 (268)
+|||||+|.+.++|+.||.. +..|+|+.|.|+++....
T Consensus 57 ~g~afV~f~~~~~a~~A~~~--~~~~~g~~l~v~~a~~~~ 94 (103)
T 2cqg_A 57 KGFGFVRFTEYETQVKVMSQ--RHMIDGRWCDCKLPNSKQ 94 (103)
T ss_dssp EEEEEEEESSHHHHHHHHHS--CEEETTEEEEEECCCTTC
T ss_pred cceEEEEECCHHHHHHHHHc--CCeeCCeEEEEEecCCCC
Confidence 58999999999999999984 679999999999998654
No 166
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=97.87 E-value=1.3e-05 Score=64.42 Aligned_cols=39 Identities=38% Similarity=0.606 Sum_probs=36.6
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~ 41 (268)
+|||||+|.+.++|+.||..|+|..|.|..|.|.++...
T Consensus 45 ~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 83 (168)
T 1b7f_A 45 YGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPG 83 (168)
T ss_dssp CSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred ceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCCC
Confidence 589999999999999999999999999999999998743
No 167
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=97.86 E-value=1e-05 Score=64.11 Aligned_cols=41 Identities=24% Similarity=0.555 Sum_probs=32.9
Q ss_pred CccccCCCCCCCCCcccCCCCCCccccCCCCCccccccCCC
Q 024424 61 GRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNS 101 (268)
Q Consensus 61 ~rC~~CG~~GH~ardC~~~~~~~~cyrcg~~GH~~r~c~~s 101 (268)
..||+|+..||++.+|+.......||.|+..||++++|+..
T Consensus 43 ~~C~~Cg~~GH~~~~C~~~~~~~~C~~Cg~~GH~~~~Cp~~ 83 (124)
T 2lli_A 43 IQCSKCDEVGHYRSQCPHKWKKVQCTLCKSKKHSKERCPSI 83 (124)
T ss_dssp SCSSSSSCSSSSTTTSCCCCCCCSSSSSCSSCCCTTTCCCS
T ss_pred ccccccCCCCCccccCcCcccCccCCCCCcCCcchhhCCCc
Confidence 56888888888888888765557888888888888888864
No 168
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=97.85 E-value=1.2e-05 Score=63.72 Aligned_cols=41 Identities=27% Similarity=0.650 Sum_probs=35.4
Q ss_pred CCccccCCCCCCCCCcccCCC-------------------CCCccccCCCCCccccccCC
Q 024424 60 SGRCFNCGIDGHWARDCKAGD-------------------WKNKCYRCGERGHIERNCQN 100 (268)
Q Consensus 60 ~~rC~~CG~~GH~ardC~~~~-------------------~~~~cyrcg~~GH~~r~c~~ 100 (268)
...||+||..||++++|+... ....||.|+..||++.+|+.
T Consensus 64 ~~~C~~Cg~~GH~~~~Cp~~~~~y~~~~~~~~~~~~~~~~~~~~Cy~Cg~~GH~a~dCp~ 123 (124)
T 2lli_A 64 KVQCTLCKSKKHSKERCPSIWRAYILVDDNEKAKPKVLPFHTIYCYNCGGKGHFGDDCKE 123 (124)
T ss_dssp CCSSSSSCSSCCCTTTCCCSTTSCCSSSCCCCCCCSCCCCCCCCTTTTSSSCTTTTTSCC
T ss_pred CccCCCCCcCCcchhhCCCccccccccCccccccccccCCCCCCcCCCCCCCcCcccCcC
Confidence 368999999999999999642 14689999999999999986
No 169
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=97.84 E-value=1.3e-05 Score=70.51 Aligned_cols=39 Identities=26% Similarity=0.366 Sum_probs=36.7
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~ 41 (268)
+|||||+|.+.++|+.||..|+|..|.|+.|.|.++...
T Consensus 52 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 90 (282)
T 3pgw_A 52 RGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTD 90 (282)
T ss_pred ceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEEeccC
Confidence 699999999999999999999999999999999999643
No 170
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=97.84 E-value=1.3e-05 Score=64.24 Aligned_cols=39 Identities=36% Similarity=0.628 Sum_probs=36.4
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~ 41 (268)
+|||||+|.+.++|+.||..|+|..|.|..|.|.++...
T Consensus 44 ~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 82 (167)
T 1fxl_A 44 LGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPS 82 (167)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCC
Confidence 489999999999999999999999999999999998743
No 171
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=97.83 E-value=7.4e-06 Score=65.23 Aligned_cols=37 Identities=22% Similarity=0.124 Sum_probs=33.3
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEecc
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 39 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~ 39 (268)
.+|||||+|.+.++|++||.. ++.+|.|+.|.|..+.
T Consensus 83 srGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~~a~ 119 (126)
T 2hgm_A 83 ITGEAFVQFASQELAEKALGK-HKERIGHRYIEVFKSS 119 (126)
T ss_dssp SCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCEEEC
T ss_pred CceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEEECC
Confidence 479999999999999999974 7799999999998774
No 172
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=97.82 E-value=1.3e-05 Score=65.30 Aligned_cols=39 Identities=33% Similarity=0.590 Sum_probs=35.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~ 41 (268)
.+|||||+|.+.++|+.|| .|+|..|.|+.|.|.++...
T Consensus 53 ~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~~~~~ 91 (175)
T 1fje_B 53 NRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKPKGR 91 (175)
T ss_dssp TTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEECCCCS
T ss_pred cccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEecCCCc
Confidence 4799999999999999999 59999999999999998753
No 173
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=97.79 E-value=1.8e-05 Score=68.13 Aligned_cols=39 Identities=26% Similarity=0.413 Sum_probs=36.9
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~ 41 (268)
+|||||+|.+.++|+.||..|+|..|.|+.|.|.++...
T Consensus 72 ~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 110 (229)
T 2adc_A 72 KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 110 (229)
T ss_dssp SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCc
Confidence 699999999999999999999999999999999998754
No 174
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=97.79 E-value=1.2e-05 Score=66.47 Aligned_cols=39 Identities=21% Similarity=0.416 Sum_probs=36.1
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~ 41 (268)
.+|||||+|.+.++|+.|| .|+|..|.|+.|.|.++...
T Consensus 50 ~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~v~~~~~~ 88 (198)
T 2yh0_A 50 DKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHDY 88 (198)
T ss_dssp TTTEEEEEESCSHHHHHHG-GGTTEEETTEEEEEECCCCC
T ss_pred CCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEEEeCCCCC
Confidence 3799999999999999999 99999999999999998754
No 175
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=97.77 E-value=2e-05 Score=63.72 Aligned_cols=39 Identities=21% Similarity=0.416 Sum_probs=35.8
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~ 41 (268)
.+|||||+|.+.++|+.|| .|+|..|.|+.|.|.++...
T Consensus 50 ~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~~~~~ 88 (172)
T 2g4b_A 50 DKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHDY 88 (172)
T ss_dssp TTTEEEEEESSHHHHHHHG-GGTTCEETTEECEEECCSSC
T ss_pred CCCEEEEEeCCHHHHHHHH-HhCCcEecCceeeecCCccc
Confidence 3799999999999999999 99999999999999987643
No 176
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=97.76 E-value=2.4e-05 Score=62.56 Aligned_cols=39 Identities=28% Similarity=0.547 Sum_probs=36.6
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~ 41 (268)
+|||||+|.+.++|+.||..|+|..|.|..|.|.++...
T Consensus 41 ~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 41 VNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 589999999999999999999999999999999998654
No 177
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.75 E-value=1.7e-05 Score=59.72 Aligned_cols=37 Identities=22% Similarity=0.315 Sum_probs=34.0
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 40 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~ 40 (268)
.+.+||+|.+.+.|..||. |||.+|+|+.|+|.++..
T Consensus 49 ~d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lkt~ 85 (91)
T 2dnr_A 49 EDKMWVTFLEGSSALNVLS-LNGKELLNRTITIALKSP 85 (91)
T ss_dssp SSSEEEEESSHHHHHHGGG-GTTCEETTEEEEEEECCC
T ss_pred cCCEEEEECChHHHHHHHh-cCCeEeCCeEEEEEeCCC
Confidence 4669999999999999998 999999999999999863
No 178
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=97.74 E-value=1.7e-05 Score=66.07 Aligned_cols=39 Identities=26% Similarity=0.413 Sum_probs=36.8
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~ 41 (268)
+|||||+|.+.++|+.||..|+|..|.|+.|.|.++...
T Consensus 41 ~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 79 (198)
T 1qm9_A 41 KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 79 (198)
T ss_dssp SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCC
Confidence 699999999999999999999999999999999998754
No 179
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.74 E-value=7.8e-06 Score=64.75 Aligned_cols=36 Identities=19% Similarity=0.029 Sum_probs=32.9
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEecc
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 39 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~ 39 (268)
+|||||+|.+.++|++||.. ++..|.|+.|.|..+.
T Consensus 68 ~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~~a~ 103 (123)
T 2dha_A 68 TGDAFVLFACEEYAQNALRK-HKDLLGKRYIELFRST 103 (123)
T ss_dssp EEEEEECCSSHHHHHHHHTT-TTEESSSCEECCEEEC
T ss_pred eeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEECC
Confidence 69999999999999999986 9999999999888764
No 180
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=97.72 E-value=3e-05 Score=64.98 Aligned_cols=39 Identities=31% Similarity=0.397 Sum_probs=35.3
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 40 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~ 40 (268)
.+|||||+|.+.++|+.||..|+|..|.|+.|.|.++..
T Consensus 69 ~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 69 HKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp CCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSC
T ss_pred cCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCC
Confidence 479999999999999999999999999999999988764
No 181
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=97.69 E-value=2.7e-05 Score=68.56 Aligned_cols=39 Identities=28% Similarity=0.548 Sum_probs=36.8
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~ 41 (268)
+|||||+|.+.++|+.||..|+|..|.|+.|.|.++...
T Consensus 226 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 264 (284)
T 3smz_A 226 KGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPG 264 (284)
T ss_dssp EEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSS
T ss_pred ccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCC
Confidence 689999999999999999999999999999999999754
No 182
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=97.67 E-value=1.2e-05 Score=60.41 Aligned_cols=37 Identities=16% Similarity=0.269 Sum_probs=34.0
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~ 41 (268)
+|||||+|.+.++|+.||. +|..|+|..|.|.++...
T Consensus 50 ~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~~~ 86 (102)
T 2xs2_A 50 KGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAIRK 86 (102)
T ss_dssp EEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEEEC
T ss_pred cceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECCcC
Confidence 6999999999999999998 999999999999998743
No 183
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=97.62 E-value=2.4e-05 Score=45.31 Aligned_cols=19 Identities=53% Similarity=1.148 Sum_probs=16.3
Q ss_pred CccccCCCCCCCCCcccCC
Q 024424 61 GRCFNCGIDGHWARDCKAG 79 (268)
Q Consensus 61 ~rC~~CG~~GH~ardC~~~ 79 (268)
..||+||+.|||+++|+..
T Consensus 3 ~~Cf~CG~~GH~ardC~~~ 21 (26)
T 1dsq_A 3 PVCFSCGKTGHIKRDCKEE 21 (26)
T ss_dssp CBCTTTCCBSSCTTTTTCC
T ss_pred CeeEeCCCCCcccccCCCc
Confidence 5799999999999999865
No 184
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=97.60 E-value=3.7e-05 Score=52.74 Aligned_cols=26 Identities=31% Similarity=0.765 Sum_probs=20.5
Q ss_pred CCCCCCCccccCCCCCCCCCcccCCC
Q 024424 55 GPPPGSGRCFNCGIDGHWARDCKAGD 80 (268)
Q Consensus 55 ~~~~~~~rC~~CG~~GH~ardC~~~~ 80 (268)
+.+.....||+||+.|||++||+...
T Consensus 18 ~~~~~~~~C~~Cge~GH~ardCp~~~ 43 (56)
T 1u6p_A 18 RSQLDRDQCAYCKEKGHWAKDCPKKP 43 (56)
T ss_dssp STTCCTTBCSSSCCBSSCGGGCTTCC
T ss_pred CCCCCCCcceeCCCCCcccccCcCCc
Confidence 44556678999999999999998753
No 185
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=97.56 E-value=6e-05 Score=66.09 Aligned_cols=38 Identities=24% Similarity=0.413 Sum_probs=36.2
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 40 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~ 40 (268)
+|||||+|.+.++|+.||..|+|..|.|+.|.|.++..
T Consensus 58 kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 95 (261)
T 3sde_A 58 RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH 95 (261)
T ss_dssp TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc
Confidence 79999999999999999999999999999999999863
No 186
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=97.53 E-value=6.3e-05 Score=63.90 Aligned_cols=38 Identities=24% Similarity=0.465 Sum_probs=35.8
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 40 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~ 40 (268)
+|||||+|.+.++|+.||..|++..+.|+.|.|.++..
T Consensus 57 ~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~ 94 (213)
T 4f02_A 57 LGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQR 94 (213)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cccccceeCCHHHHHHHHHHhhhhhcCCcccccccccc
Confidence 58999999999999999999999999999999998864
No 187
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=97.47 E-value=0.0001 Score=68.28 Aligned_cols=38 Identities=21% Similarity=0.580 Sum_probs=32.0
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeec---Cc--ceEEEecc
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVD---GS--RIIVEFAR 39 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~---Gr--~IrVe~a~ 39 (268)
.+|||||+|++.+||++||+.|||++|. |. .|.|.++.
T Consensus 55 ~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~~ 97 (345)
T 3tht_A 55 NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVE 97 (345)
T ss_dssp TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEECS
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEEEee
Confidence 3799999999999999999999999884 44 46677664
No 188
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=97.46 E-value=3.9e-05 Score=56.84 Aligned_cols=20 Identities=25% Similarity=0.644 Sum_probs=16.3
Q ss_pred CCccccCCCCCccccccCCC
Q 024424 82 KNKCYRCGERGHIERNCQNS 101 (268)
Q Consensus 82 ~~~cyrcg~~GH~~r~c~~s 101 (268)
...||.|+..||++.+|+..
T Consensus 5 ~~~C~~Cg~~GH~~~~Cp~~ 24 (83)
T 3nyb_B 5 KVQCTLCKSKKHSKERCPSI 24 (83)
T ss_dssp --CCSSSCCSSSCGGGCGGG
T ss_pred cCCCCCCCCCCCccccCCCc
Confidence 35799999999999999874
No 189
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=97.45 E-value=6.9e-05 Score=44.42 Aligned_cols=21 Identities=52% Similarity=1.091 Sum_probs=17.6
Q ss_pred CCccccCCCCCCCCCcccCCC
Q 024424 60 SGRCFNCGIDGHWARDCKAGD 80 (268)
Q Consensus 60 ~~rC~~CG~~GH~ardC~~~~ 80 (268)
...||+||+.|||+.+|+.+.
T Consensus 6 ~~~C~nCgk~GH~ar~C~~pr 26 (29)
T 1nc8_A 6 VIRCWNCGKEGHSARQCRAPR 26 (29)
T ss_dssp CCBCTTTSCBSSCGGGCCSSS
T ss_pred CCEEEECCccccCHhHCcccc
Confidence 467999999999999998764
No 190
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=97.44 E-value=0.00011 Score=64.93 Aligned_cols=40 Identities=23% Similarity=0.436 Sum_probs=36.8
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~ 41 (268)
.+|||||+|.+.++|+.||..|+|..|.|..|.|.++...
T Consensus 158 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 197 (292)
T 2ghp_A 158 SRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPL 197 (292)
T ss_dssp -CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred cceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 3799999999999999999999999999999999998754
No 191
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.43 E-value=8.2e-05 Score=57.21 Aligned_cols=34 Identities=15% Similarity=0.251 Sum_probs=27.4
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEec
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 38 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a 38 (268)
+|||||+|.+.++|+.||+.|+ .|+|..|.|..+
T Consensus 52 ~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~~~ 85 (114)
T 2dnl_A 52 KGYAFLLFQEESSVQALIDACL--EEDGKLYLCVSS 85 (114)
T ss_dssp TSEEEECCSSHHHHHHHHHHSE--EETTEEEEEECC
T ss_pred ccEEEEEECCHHHHHHHHHhhh--hcCCcEEEeccC
Confidence 7999999999999999999983 366666655543
No 192
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=97.41 E-value=0.00011 Score=64.66 Aligned_cols=39 Identities=21% Similarity=0.469 Sum_probs=36.6
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~ 41 (268)
+|||||+|.+.++|+.||..|+|..|.|+.|.|.++...
T Consensus 137 ~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~ 175 (284)
T 3smz_A 137 KGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAG 175 (284)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGG
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 589999999999999999999999999999999998753
No 193
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=97.40 E-value=7e-05 Score=60.24 Aligned_cols=38 Identities=16% Similarity=0.149 Sum_probs=31.9
Q ss_pred CCCeEEEEeCC----HHH----HHHHHH--hhCCCeecCcceEEEecc
Q 024424 2 KRDFAFVEFSD----PRD----ADDARY--SLNGRDVDGSRIIVEFAR 39 (268)
Q Consensus 2 krGfgFVeF~~----~~d----A~~Ai~--~ldG~~l~Gr~IrVe~a~ 39 (268)
.+|||||+|.+ +++ |..||. .|+|..|+|+.|+|.+..
T Consensus 47 slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I~Gr~irV~ln~ 94 (136)
T 2j8a_A 47 PLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFIMGFKFEVILNK 94 (136)
T ss_dssp EEEEEEEECC------CCHHHHHHHHHHHTTTTCEEETTEEEEEEECC
T ss_pred eeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCeecCcEEEEEECc
Confidence 47999999996 434 889998 899999999999999875
No 194
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=97.39 E-value=0.00012 Score=60.37 Aligned_cols=38 Identities=26% Similarity=0.385 Sum_probs=34.2
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~ 41 (268)
+|||||+|.+.++|+.||.. ++..|.|+.|.|.++...
T Consensus 55 ~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~~~~ 92 (196)
T 1l3k_A 55 RGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSR 92 (196)
T ss_dssp EEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEECCC-
T ss_pred cceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecccCc
Confidence 58999999999999999976 899999999999998653
No 195
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.36 E-value=0.00012 Score=55.38 Aligned_cols=35 Identities=20% Similarity=0.275 Sum_probs=32.0
Q ss_pred CeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEecc
Q 024424 4 DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 39 (268)
Q Consensus 4 GfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~ 39 (268)
+-+||+|.+.+.|..||. |||.+|+|+.|+|.+..
T Consensus 59 d~~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 59 GQMLVTFADSHSALSVLD-VDGMKVKGRAVKISGPS 93 (95)
T ss_dssp TEEEEECSCSHHHHHHHH-GGGSEETTEEEEEECCC
T ss_pred CcEEEEEcChHHHHHHHh-cCCeeeCCeEEEEeccC
Confidence 348999999999999998 99999999999998754
No 196
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=97.35 E-value=0.00019 Score=52.88 Aligned_cols=35 Identities=37% Similarity=0.589 Sum_probs=27.0
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCee--cCcceEEEeccCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDV--DGSRIIVEFARGG 41 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l--~Gr~IrVe~a~~~ 41 (268)
+|||||+|++.++|+. |+|..+ .|..|.|.++...
T Consensus 48 rGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~~k 84 (89)
T 3d2w_A 48 RAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAEPK 84 (89)
T ss_dssp CSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC--
T ss_pred CCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcCCC
Confidence 7999999999999883 566654 5888888888643
No 197
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.30 E-value=0.00012 Score=53.33 Aligned_cols=38 Identities=26% Similarity=0.290 Sum_probs=28.6
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~~ 42 (268)
+|||||+|.+.++|+.|+.. ...+.|..|.|.++....
T Consensus 42 ~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~~ 79 (88)
T 1wf0_A 42 RAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPKH 79 (88)
T ss_dssp CSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCCC
T ss_pred CCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCCC
Confidence 79999999999999754321 345588889998887543
No 198
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=97.21 E-value=0.00029 Score=56.65 Aligned_cols=39 Identities=23% Similarity=0.243 Sum_probs=33.3
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeec---CcceEEEeccCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVD---GSRIIVEFARGG 41 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~---Gr~IrVe~a~~~ 41 (268)
+|||||+|.+.++|+.||..|+|..+. +..|.|.++...
T Consensus 47 ~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~~ 88 (175)
T 3nmr_A 47 KGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSE 88 (175)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECGGG
T ss_pred ceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEcccccc
Confidence 589999999999999999999998876 567777776543
No 199
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=97.11 E-value=0.00036 Score=61.53 Aligned_cols=36 Identities=28% Similarity=0.226 Sum_probs=33.7
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEecc
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 39 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~ 39 (268)
+|||||+|.+.++|+.|| .|+|..|.|+.|.|.++.
T Consensus 81 ~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~~~ 116 (292)
T 2ghp_A 81 FRFARIEFARYDGALAAI-TKTHKVVGQNEIIVSHLT 116 (292)
T ss_dssp SEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEECC
T ss_pred cEEEEEEECCHHHHHHHH-HhCCcEeCCcEEEEEECC
Confidence 699999999999999999 599999999999999874
No 200
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.10 E-value=0.00023 Score=48.58 Aligned_cols=21 Identities=33% Similarity=1.005 Sum_probs=17.6
Q ss_pred CCCccccCCCCCCCCCcccCC
Q 024424 59 GSGRCFNCGIDGHWARDCKAG 79 (268)
Q Consensus 59 ~~~rC~~CG~~GH~ardC~~~ 79 (268)
....||+||+.|||+.+|+..
T Consensus 6 ~~~~C~kCGk~GH~~k~Cp~~ 26 (55)
T 2ysa_A 6 SGYTCFRCGKPGHYIKNCPTN 26 (55)
T ss_dssp SSCCCTTTCCTTSCGGGCSGG
T ss_pred CCCccccCCCcCcccccCCCC
Confidence 345799999999999999843
No 201
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=97.05 E-value=0.00023 Score=51.52 Aligned_cols=33 Identities=24% Similarity=0.602 Sum_probs=19.0
Q ss_pred CCCCCCcccCCC---------CCCccccCCCCCccccccCCC
Q 024424 69 DGHWARDCKAGD---------WKNKCYRCGERGHIERNCQNS 101 (268)
Q Consensus 69 ~GH~ardC~~~~---------~~~~cyrcg~~GH~~r~c~~s 101 (268)
.||+++||+.+. ....||+|++.||++++|+..
T Consensus 2 ~gh~~rdc~~~~~~~~~~~~~r~~~C~~Cg~~GH~a~~C~~~ 43 (74)
T 2li8_A 2 SGLVPRGSHMPKGKSMQKRRSKGDRCYNCGGLDHHAKECKLP 43 (74)
T ss_dssp ----------CCCCCCCSCCSTTSCCTTTCCSSSCTTTCSSC
T ss_pred CccccCcCCCCCcCccccccCCCCcccccCCcCcCcccCCCC
Confidence 589999999652 446899999999999999863
No 202
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=96.93 E-value=0.00057 Score=59.77 Aligned_cols=39 Identities=23% Similarity=0.083 Sum_probs=33.3
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCC-Ceec---CcceEEEeccCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNG-RDVD---GSRIIVEFARGG 41 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG-~~l~---Gr~IrVe~a~~~ 41 (268)
+|||||+|.+.++|..||..|++ ..+. ++.|.|.++...
T Consensus 137 ~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 137 TGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCE
T ss_pred CcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeecccc
Confidence 68999999999999999999954 4444 899999998753
No 203
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=96.78 E-value=0.00084 Score=53.67 Aligned_cols=36 Identities=28% Similarity=0.422 Sum_probs=31.5
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEecc
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 39 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~ 39 (268)
.+|||||+|.+.++|+.||.. +..|+|+.|.|.++.
T Consensus 44 ~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 44 SRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp CCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred ccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 369999999999999999985 578899999888875
No 204
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=96.60 E-value=0.0013 Score=41.95 Aligned_cols=25 Identities=28% Similarity=0.803 Sum_probs=21.0
Q ss_pred CCCccccCCCCCccccccCCCCCCC
Q 024424 81 WKNKCYRCGERGHIERNCQNSPKKL 105 (268)
Q Consensus 81 ~~~~cyrcg~~GH~~r~c~~s~~~~ 105 (268)
....||.|++.|||+++|+....+.
T Consensus 9 ~~~~C~~Cgk~GH~ardCP~~~~~~ 33 (40)
T 1a6b_B 9 DRDQCAYCKEKGHWAKDCPKKPRGP 33 (40)
T ss_dssp CSSSCSSSCCTTCCTTSCSSSCCCT
T ss_pred CCCeeeECCCCCcchhhCcCCcccC
Confidence 3579999999999999999865543
No 205
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=96.57 E-value=0.0013 Score=57.75 Aligned_cols=27 Identities=19% Similarity=0.415 Sum_probs=25.4
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCee
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDV 28 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l 28 (268)
.+|||||+|.+.++|+.||+.|+|..|
T Consensus 178 ~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 178 SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 379999999999999999999999887
No 206
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=96.28 E-value=0.0022 Score=43.88 Aligned_cols=24 Identities=29% Similarity=0.868 Sum_probs=20.6
Q ss_pred CCCccccCCCCCccccccCCCCCC
Q 024424 81 WKNKCYRCGERGHIERNCQNSPKK 104 (268)
Q Consensus 81 ~~~~cyrcg~~GH~~r~c~~s~~~ 104 (268)
....||.||+.|||+++|+....+
T Consensus 22 ~~~~C~~Cge~GH~ardCp~~~~~ 45 (56)
T 1u6p_A 22 DRDQCAYCKEKGHWAKDCPKKPRG 45 (56)
T ss_dssp CTTBCSSSCCBSSCGGGCTTCCCS
T ss_pred CCCcceeCCCCCcccccCcCCccc
Confidence 467999999999999999986544
No 207
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=96.16 E-value=0.0023 Score=36.76 Aligned_cols=19 Identities=42% Similarity=1.256 Sum_probs=17.2
Q ss_pred CccccCCCCCccccccCCC
Q 024424 83 NKCYRCGERGHIERNCQNS 101 (268)
Q Consensus 83 ~~cyrcg~~GH~~r~c~~s 101 (268)
..||.||+.||++++|+..
T Consensus 3 ~~Cf~CG~~GH~ardC~~~ 21 (26)
T 1dsq_A 3 PVCFSCGKTGHIKRDCKEE 21 (26)
T ss_dssp CBCTTTCCBSSCTTTTTCC
T ss_pred CeeEeCCCCCcccccCCCc
Confidence 5799999999999999864
No 208
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.15 E-value=0.0054 Score=48.37 Aligned_cols=36 Identities=11% Similarity=0.157 Sum_probs=31.9
Q ss_pred CeEEEEeCC-HHHHHHHHHhhC--CCeecCcceEEEecc
Q 024424 4 DFAFVEFSD-PRDADDARYSLN--GRDVDGSRIIVEFAR 39 (268)
Q Consensus 4 GfgFVeF~~-~~dA~~Ai~~ld--G~~l~Gr~IrVe~a~ 39 (268)
-+|||.|.+ +.+|+.||.+|+ +.+|+|..++|+...
T Consensus 56 ~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~ 94 (121)
T 1owx_A 56 KEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLE 94 (121)
T ss_dssp SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECC
T ss_pred CEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECC
Confidence 379999999 899999999994 789999999998765
No 209
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=95.90 E-value=0.0017 Score=51.86 Aligned_cols=37 Identities=22% Similarity=0.162 Sum_probs=34.5
Q ss_pred CCeEEEEeCCHHHHHHHHHhh-CCCeecCcceEEEeccC
Q 024424 3 RDFAFVEFSDPRDADDARYSL-NGRDVDGSRIIVEFARG 40 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~l-dG~~l~Gr~IrVe~a~~ 40 (268)
+|++||+|.+.++|++||..| +|.+|+| .|.|.++..
T Consensus 13 ~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 13 KGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp CEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred cccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 689999999999999999999 9999999 999998764
No 210
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=95.63 E-value=0.011 Score=45.88 Aligned_cols=36 Identities=25% Similarity=0.247 Sum_probs=32.8
Q ss_pred CeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEecc
Q 024424 4 DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 39 (268)
Q Consensus 4 GfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~ 39 (268)
+-|+|+|.+..+|.+|.-.|||.+|+|+.|++....
T Consensus 63 ~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gTv~ 98 (117)
T 2l9w_A 63 NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGTIN 98 (117)
T ss_dssp TEEEEECSCHHHHHHHHHHHSSEEETTEEEEEECHH
T ss_pred CceEEEEccchhhHHHHhhcCCeeecCeEEEecCHH
Confidence 558999999999999999999999999999987653
No 211
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=95.43 E-value=0.0069 Score=41.51 Aligned_cols=21 Identities=38% Similarity=0.953 Sum_probs=18.5
Q ss_pred CCccccCCCCCCCCCcccCCC
Q 024424 60 SGRCFNCGIDGHWARDCKAGD 80 (268)
Q Consensus 60 ~~rC~~CG~~GH~ardC~~~~ 80 (268)
...||+||+.|||+++|+...
T Consensus 30 ~~~C~~Cg~~GH~ar~C~~~~ 50 (60)
T 1cl4_A 30 PGLCPRCKRGKHWANECKSKT 50 (60)
T ss_dssp CCSCSSCSSCSSCSTTCCCTT
T ss_pred CcceeECCCCCCccCcCCCcc
Confidence 468999999999999999763
No 212
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=95.36 E-value=0.0076 Score=35.39 Aligned_cols=20 Identities=35% Similarity=1.051 Sum_probs=17.6
Q ss_pred CCccccCCCCCccccccCCC
Q 024424 82 KNKCYRCGERGHIERNCQNS 101 (268)
Q Consensus 82 ~~~cyrcg~~GH~~r~c~~s 101 (268)
...||.|++.||++++|+..
T Consensus 6 ~~~C~nCgk~GH~ar~C~~p 25 (29)
T 1nc8_A 6 VIRCWNCGKEGHSARQCRAP 25 (29)
T ss_dssp CCBCTTTSCBSSCGGGCCSS
T ss_pred CCEEEECCccccCHhHCccc
Confidence 35799999999999999864
No 213
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=95.20 E-value=0.012 Score=36.83 Aligned_cols=19 Identities=32% Similarity=0.810 Sum_probs=16.9
Q ss_pred CCccccCCCCCCCCCcccC
Q 024424 60 SGRCFNCGIDGHWARDCKA 78 (268)
Q Consensus 60 ~~rC~~CG~~GH~ardC~~ 78 (268)
...||+||..||++++|+.
T Consensus 21 ~~~C~~Cg~~GH~~~~C~~ 39 (39)
T 2a51_A 21 QEGCWNCGSKEHRFAQCPK 39 (39)
T ss_dssp CSSCTTTCCSSSCTTTSCC
T ss_pred CCccccCCCCCCccCcCcC
Confidence 4689999999999999974
No 214
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.12 E-value=0.013 Score=40.73 Aligned_cols=31 Identities=16% Similarity=0.300 Sum_probs=22.7
Q ss_pred CCCccccCCCCCCCCCcccCCCCCCccccCCC
Q 024424 59 GSGRCFNCGIDGHWARDCKAGDWKNKCYRCGE 90 (268)
Q Consensus 59 ~~~rC~~CG~~GH~ardC~~~~~~~~cyrcg~ 90 (268)
....||+|++.||++++|+... ...++.++.
T Consensus 28 ~~~~C~~Cg~~GH~ar~Cp~~~-~~~~~~~g~ 58 (63)
T 2cqf_A 28 QPKKCHFCQSISHMVASCPLKA-QQGPSAQGS 58 (63)
T ss_dssp CSSCCTTTCCSSSCTTTCTGGG-CSCCCCSCC
T ss_pred CCCccCCcCCcCCccCcCCCcc-ccCCccCCC
Confidence 3478999999999999999753 334444443
No 215
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.00 E-value=0.009 Score=40.60 Aligned_cols=19 Identities=42% Similarity=1.135 Sum_probs=17.4
Q ss_pred CCccccCCCCCccccccCC
Q 024424 82 KNKCYRCGERGHIERNCQN 100 (268)
Q Consensus 82 ~~~cyrcg~~GH~~r~c~~ 100 (268)
...||+||+.||++++|+.
T Consensus 7 ~~~C~kCGk~GH~~k~Cp~ 25 (55)
T 2ysa_A 7 GYTCFRCGKPGHYIKNCPT 25 (55)
T ss_dssp SCCCTTTCCTTSCGGGCSG
T ss_pred CCccccCCCcCcccccCCC
Confidence 5689999999999999984
No 216
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=94.85 E-value=0.011 Score=40.80 Aligned_cols=21 Identities=38% Similarity=0.738 Sum_probs=18.4
Q ss_pred CCccccCCCCCCCCCcccCCC
Q 024424 60 SGRCFNCGIDGHWARDCKAGD 80 (268)
Q Consensus 60 ~~rC~~CG~~GH~ardC~~~~ 80 (268)
...||+||+.|||+++|+...
T Consensus 30 ~~~C~~Cg~~GH~ar~C~~~~ 50 (61)
T 2ihx_A 30 RERCQLCNGMGHNAKQCRKRD 50 (61)
T ss_dssp CSBCTTTCCBSSCGGGCCCCC
T ss_pred CCeeCCCCCCCCCcCCCcCCC
Confidence 467999999999999999753
No 217
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=94.84 E-value=0.0096 Score=36.81 Aligned_cols=18 Identities=33% Similarity=1.114 Sum_probs=16.4
Q ss_pred CccccCCCCCCCCCcccC
Q 024424 61 GRCFNCGIDGHWARDCKA 78 (268)
Q Consensus 61 ~rC~~CG~~GH~ardC~~ 78 (268)
..||+||+.||++++|+.
T Consensus 20 ~~C~~Cg~~GH~a~~C~~ 37 (37)
T 2bl6_A 20 KVCFKCKQPGHFSKQCRS 37 (37)
T ss_dssp TTCSSCCCTTGGGGTTCC
T ss_pred CeEccCCCcCCccCcCcC
Confidence 689999999999999974
No 218
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=94.60 E-value=0.012 Score=47.12 Aligned_cols=24 Identities=13% Similarity=0.036 Sum_probs=21.6
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGR 26 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~ 26 (268)
+|||||+|.+.++|++||..+++.
T Consensus 13 ~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 13 KGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHhHHHHHHhhccc
Confidence 699999999999999999887753
No 219
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=94.35 E-value=0.016 Score=38.11 Aligned_cols=20 Identities=30% Similarity=0.813 Sum_probs=17.7
Q ss_pred CCccccCCCCCCCCCcccCC
Q 024424 60 SGRCFNCGIDGHWARDCKAG 79 (268)
Q Consensus 60 ~~rC~~CG~~GH~ardC~~~ 79 (268)
...||+||..||++.+|+..
T Consensus 27 ~~~C~~Cg~~GH~~~~C~~~ 46 (49)
T 2ec7_A 27 RQGCWKCGKTGHVMAKCPER 46 (49)
T ss_dssp CCSCSSSCCSSCCGGGCCSS
T ss_pred CCeeCcCCCcCCccCCCcCC
Confidence 35799999999999999864
No 220
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=93.91 E-value=0.02 Score=38.46 Aligned_cols=20 Identities=35% Similarity=0.996 Sum_probs=17.8
Q ss_pred CCccccCCCCCCCCCcccCC
Q 024424 60 SGRCFNCGIDGHWARDCKAG 79 (268)
Q Consensus 60 ~~rC~~CG~~GH~ardC~~~ 79 (268)
...||+||..||++.+|+..
T Consensus 33 ~~~C~~Cg~~GH~~~~C~~~ 52 (55)
T 1a1t_A 33 KKGCWKCGKEGHQMKDCTER 52 (55)
T ss_dssp CCBCTTTCCBSSCGGGCSSS
T ss_pred CCEeCCCCCcCCccCCCcCc
Confidence 46899999999999999865
No 221
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.05 E-value=0.07 Score=40.83 Aligned_cols=35 Identities=31% Similarity=0.487 Sum_probs=32.7
Q ss_pred EEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccC
Q 024424 6 AFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 40 (268)
Q Consensus 6 gFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~ 40 (268)
..|.|.++++|..|-..||++.|+|..|+|.|+..
T Consensus 49 irv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 49 VRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQT 83 (104)
T ss_dssp EEEECSSTTHHHHHHHTSTTSEETTEECEEECCCC
T ss_pred EEEEeCChHHHHHHHHHhccceecCceeEEEecCC
Confidence 47999999999999999999999999999999873
No 222
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=92.49 E-value=0.052 Score=44.02 Aligned_cols=21 Identities=19% Similarity=0.449 Sum_probs=18.6
Q ss_pred CCCccccCCCCCCCCCcccCC
Q 024424 59 GSGRCFNCGIDGHWARDCKAG 79 (268)
Q Consensus 59 ~~~rC~~CG~~GH~ardC~~~ 79 (268)
....||+||..||++++|+..
T Consensus 118 ~~~~C~~Cg~~GH~~r~Cp~~ 138 (148)
T 3ts2_A 118 QPKKCHFCQSINHMVASCPLK 138 (148)
T ss_dssp CCCCCTTTCCSSCCGGGCTTT
T ss_pred CCCcccccCCcCCEeccCcCC
Confidence 356899999999999999965
No 223
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=83.53 E-value=0.85 Score=31.94 Aligned_cols=37 Identities=16% Similarity=0.262 Sum_probs=27.8
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEecc
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 39 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~ 39 (268)
...|.||+..... |+.++..|.+..++|+.|.|+.+.
T Consensus 39 ~d~~s~v~v~~~~-~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 39 MDNASYVEILNGK-GPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp CSSCEEEEECTTC-HHHHHHHHTTCCC---CCCEEECC
T ss_pred eCCcEEEEECHHH-HHHHHHHhccccCcCceEEEEECC
Confidence 3468899986654 888999999999999999998764
No 224
>2hqh_E Restin; beta/BETA structure, zinc finger motif, structural protein, binding; 1.80A {Homo sapiens}
Probab=71.20 E-value=0.89 Score=25.82 Aligned_cols=17 Identities=41% Similarity=1.075 Sum_probs=14.5
Q ss_pred ccccCCCCCCCCCcccC
Q 024424 62 RCFNCGIDGHWARDCKA 78 (268)
Q Consensus 62 rC~~CG~~GH~ardC~~ 78 (268)
-|-.|...|||..+|..
T Consensus 5 YCe~CE~FGH~t~~C~d 21 (26)
T 2hqh_E 5 YCEICEMFGHWATNCND 21 (26)
T ss_dssp EETTTTEESSCGGGCCT
T ss_pred cchHHHHhCcccccCCc
Confidence 38899999999999953
No 225
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=69.16 E-value=6 Score=31.30 Aligned_cols=34 Identities=24% Similarity=0.245 Sum_probs=29.1
Q ss_pred CeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEec
Q 024424 4 DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 38 (268)
Q Consensus 4 GfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a 38 (268)
++..|.|++..+|.+|| ..||..|+|.-|-|...
T Consensus 63 NWikItYds~~~A~rAL-~~NG~ii~G~mIGV~Py 96 (132)
T 3p3d_A 63 SWTKITYDNPASAVDAL-LENGAVFNGVLLGVIPY 96 (132)
T ss_dssp TEEEEEBSSHHHHHHHH-TTTTCEETTEECEEEEC
T ss_pred cEEEEEcCCHHHHHHHH-HhCCeEeCcEEEEEEEC
Confidence 56799999999999999 57999999987767664
No 226
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=62.39 E-value=8.1 Score=29.95 Aligned_cols=34 Identities=21% Similarity=0.199 Sum_probs=26.2
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCc-ceEEEe
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGS-RIIVEF 37 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr-~IrVe~ 37 (268)
.++-.|.|.+..+|++||. .||..|+|. .|-|..
T Consensus 59 ~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 59 GNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKP 93 (119)
T ss_dssp SSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEE
T ss_pred CCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEE
Confidence 3678999999999999995 599998853 344443
No 227
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=57.24 E-value=11 Score=28.07 Aligned_cols=35 Identities=31% Similarity=0.386 Sum_probs=27.9
Q ss_pred eEEEEeCCHHHHHHHHHhhCCCeecCc-----ceEEEecc
Q 024424 5 FAFVEFSDPRDADDARYSLNGRDVDGS-----RIIVEFAR 39 (268)
Q Consensus 5 fgFVeF~~~~dA~~Ai~~ldG~~l~Gr-----~IrVe~a~ 39 (268)
-|||.|.+.+|+..-.+.++|..|... ...||+|-
T Consensus 55 RAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a~VE~AP 94 (97)
T 2l08_A 55 RAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPAVVEFAP 94 (97)
T ss_dssp CCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEEEEEECC
T ss_pred EEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeeeEEEecC
Confidence 489999999999999999999887543 34466663
No 228
>2pzo_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskeleton associated protein, P150glued; 2.60A {Homo sapiens} PDB: 3e2u_E
Probab=56.06 E-value=2.7 Score=26.54 Aligned_cols=17 Identities=41% Similarity=1.075 Sum_probs=14.9
Q ss_pred ccccCCCCCCCCCcccC
Q 024424 62 RCFNCGIDGHWARDCKA 78 (268)
Q Consensus 62 rC~~CG~~GH~ardC~~ 78 (268)
-|-.|..+|||..+|..
T Consensus 22 YCd~CEvFGH~t~~Cnd 38 (42)
T 2pzo_E 22 YCEICEMFGHWATNCND 38 (42)
T ss_dssp EETTTTEESSCGGGCCT
T ss_pred ccccccccCcccccCCc
Confidence 49999999999999953
No 229
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=55.47 E-value=15 Score=27.00 Aligned_cols=35 Identities=29% Similarity=0.328 Sum_probs=27.6
Q ss_pred eEEEEeCCHHHHHHHHHhhCCCeecCc-----ceEEEecc
Q 024424 5 FAFVEFSDPRDADDARYSLNGRDVDGS-----RIIVEFAR 39 (268)
Q Consensus 5 fgFVeF~~~~dA~~Ai~~ldG~~l~Gr-----~IrVe~a~ 39 (268)
-|||.|.+.+++..-.+.++|..|... ...||+|-
T Consensus 47 RaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~VE~AP 86 (91)
T 1uw4_A 47 RAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAIVEFAP 86 (91)
T ss_dssp EEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECEEEECS
T ss_pred EEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeEEEEcC
Confidence 489999999999999999999987433 23466653
No 230
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.53 E-value=17 Score=27.42 Aligned_cols=34 Identities=18% Similarity=0.316 Sum_probs=25.7
Q ss_pred CeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEec
Q 024424 4 DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 38 (268)
Q Consensus 4 GfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a 38 (268)
+-|+|+|.+.+.|+..|.+ .-..|++..|.|.-.
T Consensus 48 ~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~P~ 81 (104)
T 2dhx_A 48 CGGVLTFREPADAERVLAQ-ADHELHGAQLSLRPA 81 (104)
T ss_dssp TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEEEC
T ss_pred CcEEEEEcChHHHHHHhcC-CcceecCeEEEEEcC
Confidence 4589999999999888854 235677777777654
No 231
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=40.39 E-value=18 Score=27.30 Aligned_cols=26 Identities=12% Similarity=0.215 Sum_probs=22.3
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCee
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDV 28 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l 28 (268)
+||-|||=....+..+||++|-+...
T Consensus 51 kGyIyVEA~~~~~V~~ai~gi~~v~~ 76 (106)
T 3h7h_B 51 KGYIYVEAYKQTHVKQAIEGVGNLRL 76 (106)
T ss_dssp CSEEEEEESSHHHHHHHHTTCGGGGG
T ss_pred ceEEEEEeCCHHHHHHHHhcccceec
Confidence 79999999999999999988765543
No 232
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=39.05 E-value=21 Score=25.87 Aligned_cols=24 Identities=13% Similarity=0.239 Sum_probs=20.8
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGR 26 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~ 26 (268)
.||.||++.-.++...+|..+.|.
T Consensus 50 PGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 50 KGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp TTEEEEEESSHHHHHHHHTTCTTE
T ss_pred CCEEEEEEecchhHHHHHHCCCCc
Confidence 599999999999998998887763
No 233
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=37.50 E-value=86 Score=29.05 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=13.2
Q ss_pred EEEEeCCHHHHHHHHHh--hCCCee
Q 024424 6 AFVEFSDPRDADDARYS--LNGRDV 28 (268)
Q Consensus 6 gFVeF~~~~dA~~Ai~~--ldG~~l 28 (268)
-|.+.+++..|..+|.+ |+|..|
T Consensus 150 ~F~~~e~A~~Ai~~lng~~i~gr~i 174 (437)
T 3pgw_S 150 EYEHERDMHSAYKHADGKKIDGRRV 174 (437)
T ss_pred eeccHHHHHHHHHHcCCCEECCEEE
Confidence 45566666666666554 555544
No 234
>3e2u_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskelet associated protein, P150glued; 2.60A {Homo sapiens}
Probab=34.10 E-value=9.5 Score=24.06 Aligned_cols=17 Identities=41% Similarity=1.075 Sum_probs=14.9
Q ss_pred ccccCCCCCCCCCcccC
Q 024424 62 RCFNCGIDGHWARDCKA 78 (268)
Q Consensus 62 rC~~CG~~GH~ardC~~ 78 (268)
-|-.|-.+|||..+|..
T Consensus 22 YCe~CEVFGH~t~eC~d 38 (42)
T 3e2u_E 22 YCEICEMFGHWATNCND 38 (42)
T ss_dssp EETTTTEESSCGGGCCT
T ss_pred ccccceecccccccCCc
Confidence 49999999999999964
No 235
>2ytv_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=31.82 E-value=16 Score=25.98 Aligned_cols=13 Identities=23% Similarity=0.634 Sum_probs=10.5
Q ss_pred CCCCeEEEEeCCH
Q 024424 1 MKRDFAFVEFSDP 13 (268)
Q Consensus 1 lkrGfgFVeF~~~ 13 (268)
+.+|||||+.++-
T Consensus 16 ~~KGfGFI~~ddg 28 (79)
T 2ytv_A 16 VKDQFGFINYEVG 28 (79)
T ss_dssp CCSSEEEESCCCS
T ss_pred ecccceeEeCCCC
Confidence 4689999998754
No 236
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=31.75 E-value=9.8 Score=30.07 Aligned_cols=31 Identities=19% Similarity=0.205 Sum_probs=0.0
Q ss_pred EEeCCHHHHHHHHHhhCCCeec--CcceEEEec
Q 024424 8 VEFSDPRDADDARYSLNGRDVD--GSRIIVEFA 38 (268)
Q Consensus 8 VeF~~~~dA~~Ai~~ldG~~l~--Gr~IrVe~a 38 (268)
++|++.+||++||..|++..+. |+.+.+.+.
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~ 43 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSN 43 (165)
T ss_dssp ---------------------------------
T ss_pred hhhhccccccccchhhccccccccCCCCCCCcc
Confidence 7899999999999999998765 666666654
No 237
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=21.68 E-value=60 Score=25.41 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=21.1
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGR 26 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~ 26 (268)
.||-||++.-.++...+|..+.|.
T Consensus 43 PGYVfVe~~~~~~~~~~v~~t~gV 66 (152)
T 3p8b_B 43 KGYIFVEAPNKGVVDEAIRGIRHA 66 (152)
T ss_dssp CSEEEEEESSHHHHHHHHTTCTTE
T ss_pred CcEEEEEEEchHHHHHHHhCCCCE
Confidence 699999999999999999888774
No 238
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=21.04 E-value=44 Score=23.31 Aligned_cols=12 Identities=17% Similarity=0.512 Sum_probs=9.9
Q ss_pred CCCeEEEEeCCH
Q 024424 2 KRDFAFVEFSDP 13 (268)
Q Consensus 2 krGfgFVeF~~~ 13 (268)
.+|||||+-++.
T Consensus 13 ~KGfGFI~~~dg 24 (74)
T 2k5n_A 13 DKGFGFIKDENG 24 (74)
T ss_dssp TTTEEEEEESSS
T ss_pred CCCeEEEecCCC
Confidence 589999998764
No 239
>1x65_A UNR protein; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold, greek-KEY topology protein; NMR {Homo sapiens}
Probab=20.69 E-value=36 Score=24.69 Aligned_cols=12 Identities=25% Similarity=0.648 Sum_probs=9.9
Q ss_pred CCCeEEEEeCCH
Q 024424 2 KRDFAFVEFSDP 13 (268)
Q Consensus 2 krGfgFVeF~~~ 13 (268)
.+|||||+..+-
T Consensus 17 ~KGfGFI~~~~g 28 (89)
T 1x65_A 17 RDGFGFIKCVDR 28 (89)
T ss_dssp CTTBCEEEESSS
T ss_pred eCCcceeecCCC
Confidence 589999998763
Done!