Query 024424
Match_columns 268
No_of_seqs 292 out of 1711
Neff 6.8
Searched_HMMs 13730
Date Mon Mar 25 08:00:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024424.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024424hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2exfa1 g.40.1.1 (A:12-53) HIV 98.9 5.1E-10 3.7E-14 71.3 4.2 39 61-100 2-40 (42)
2 d1wf2a_ d.58.7.1 (A:) Heteroge 98.8 2.4E-09 1.7E-13 80.0 5.1 41 1-41 48-88 (98)
3 d1b7fa1 d.58.7.1 (A:123-204) S 98.6 1.5E-08 1.1E-12 72.4 5.4 38 3-40 44-81 (82)
4 d2bz2a1 d.58.7.1 (A:35-113) Ne 98.6 2.3E-08 1.6E-12 71.3 5.6 40 2-41 38-77 (79)
5 d1x5ta1 d.58.7.1 (A:8-90) Spli 98.6 2.7E-08 2E-12 71.3 5.7 39 3-41 41-79 (83)
6 d2cpfa1 d.58.7.1 (A:362-446) P 98.6 1.7E-08 1.3E-12 72.7 4.7 38 3-40 43-80 (85)
7 d1x4aa1 d.58.7.1 (A:9-103) Spl 98.6 2.6E-08 1.9E-12 73.4 5.6 40 2-41 52-91 (95)
8 d1rk8a_ d.58.7.1 (A:) RNA-bind 98.6 1.7E-08 1.2E-12 73.5 4.5 38 3-40 49-86 (88)
9 d2cq3a1 d.58.7.1 (A:110-202) R 98.6 3.1E-08 2.3E-12 72.7 5.9 40 2-41 50-89 (93)
10 d2cq0a1 d.58.7.1 (A:231-320) E 98.6 2E-08 1.5E-12 73.3 4.8 38 3-40 50-87 (90)
11 d1wg1a_ d.58.7.1 (A:) Probable 98.6 1.5E-08 1.1E-12 73.9 4.0 40 2-41 39-78 (88)
12 d1no8a_ d.58.7.1 (A:) Nuclear 98.6 2.9E-08 2.1E-12 70.6 5.3 38 2-39 40-77 (78)
13 d1x5ua1 d.58.7.1 (A:7-99) Spli 98.6 3.2E-08 2.3E-12 72.8 5.6 41 2-42 50-90 (93)
14 d1u6fa1 d.58.7.1 (A:1-139) RNA 98.6 4.5E-08 3.2E-12 76.9 6.7 40 3-42 84-123 (139)
15 d1h2vz_ d.58.7.1 (Z:) CBP20, 2 98.6 2.9E-08 2.1E-12 73.0 5.3 40 3-42 49-88 (93)
16 d2cpea1 d.58.7.1 (A:353-453) R 98.6 3E-08 2.2E-12 73.4 5.4 40 3-42 58-97 (101)
17 d1wi6a1 d.58.7.1 (A:69-143) Ri 98.6 3.5E-08 2.5E-12 69.8 5.5 39 2-40 32-70 (75)
18 d1cvja2 d.58.7.1 (A:91-179) Po 98.6 1.3E-08 9.4E-13 74.2 3.2 39 3-41 48-86 (89)
19 d1fxla1 d.58.7.1 (A:37-118) Hu 98.6 2.6E-08 1.9E-12 71.0 4.6 37 3-39 44-80 (82)
20 d1x4ga1 d.58.7.1 (A:8-103) Nuc 98.6 3.4E-08 2.5E-12 73.1 5.3 39 3-41 54-92 (96)
21 d1whwa_ d.58.7.1 (A:) Probable 98.5 6E-08 4.4E-12 71.9 6.7 41 2-42 49-89 (99)
22 d2cpha1 d.58.7.1 (A:454-547) P 98.5 4.1E-08 3E-12 72.3 5.6 40 2-41 50-90 (94)
23 d1fjca_ d.58.7.1 (A:) Nucleoli 98.5 3.2E-08 2.3E-12 73.0 4.8 40 3-42 53-92 (96)
24 d2ghpa1 d.58.7.1 (A:116-196) U 98.5 3.9E-08 2.8E-12 70.1 5.0 38 2-39 42-79 (81)
25 d2cpda1 d.58.7.1 (A:223-308) A 98.5 4.4E-08 3.2E-12 70.7 5.3 41 2-42 43-83 (86)
26 d1x5sa1 d.58.7.1 (A:8-97) Cold 98.5 4.1E-08 3E-12 71.4 5.1 40 2-41 46-85 (90)
27 d2cpza1 d.58.7.1 (A:383-484) C 98.5 3.3E-08 2.4E-12 73.9 4.5 39 3-41 60-98 (102)
28 d2adca1 d.58.7.1 (A:335-443) P 98.5 4E-08 2.9E-12 73.7 5.1 39 2-40 39-77 (109)
29 d3begb1 d.58.7.1 (B:121-207) S 98.5 2.8E-08 2.1E-12 72.1 3.9 40 1-40 33-72 (87)
30 d1cvja1 d.58.7.1 (A:11-90) Pol 98.5 2.7E-08 2E-12 71.0 3.8 37 3-39 42-78 (80)
31 d2cqha1 d.58.7.1 (A:2-81) IGF- 98.5 5.3E-08 3.9E-12 69.5 4.9 40 2-41 36-76 (80)
32 d2f9da1 d.58.7.1 (A:12-125) Pr 98.5 5.6E-08 4.1E-12 73.6 5.1 38 3-40 46-83 (114)
33 d2cqba1 d.58.7.1 (A:1-89) Pept 98.5 5.2E-08 3.8E-12 70.9 4.6 39 2-40 46-84 (89)
34 d2ghpa3 d.58.7.1 (A:206-291) U 98.5 4.8E-08 3.5E-12 70.7 4.2 39 2-41 47-85 (86)
35 d2u2fa_ d.58.7.1 (A:) Splicing 98.5 7.7E-08 5.6E-12 69.5 5.0 41 2-42 42-82 (85)
36 d2cpxa1 d.58.7.1 (A:291-392) R 98.5 8.1E-08 5.9E-12 71.2 5.3 40 2-41 59-98 (102)
37 d1wg4a_ d.58.7.1 (A:) Splicing 98.5 6.9E-08 5.1E-12 71.7 4.8 40 2-41 49-88 (98)
38 d2cqia1 d.58.7.1 (A:1-90) Nucl 98.4 1E-07 7.4E-12 69.4 5.4 40 2-41 47-86 (90)
39 d1weya_ d.58.7.1 (A:) Calcipre 98.4 1.6E-07 1.2E-11 70.6 6.7 40 3-42 46-85 (104)
40 d2cpja1 d.58.7.1 (A:65-150) No 98.4 7.7E-08 5.6E-12 69.7 4.6 38 3-40 44-81 (86)
41 d1whxa_ d.58.7.1 (A:) Probable 98.4 8.9E-08 6.5E-12 71.9 5.0 40 2-41 45-84 (111)
42 d1fjeb1 d.58.7.1 (B:1-91) Nucl 98.4 7.5E-08 5.4E-12 70.5 4.3 38 2-40 53-90 (91)
43 d1nu4a_ d.58.7.1 (A:) Spliceso 98.4 1.2E-07 8.7E-12 69.2 5.3 39 3-41 46-84 (91)
44 d2dita1 d.58.7.1 (A:8-106) HIV 98.4 1.3E-07 9.4E-12 70.4 5.6 41 2-42 56-96 (99)
45 d2cqpa1 d.58.7.1 (A:917-1002) 98.4 9.7E-08 7.1E-12 68.7 4.5 37 2-38 50-86 (86)
46 d2adca2 d.58.7.1 (A:444-531) P 98.4 1.4E-07 1E-11 68.2 5.3 38 3-40 48-86 (88)
47 d2b0ga1 d.58.7.1 (A:1-83) Spli 98.4 1.4E-07 1E-11 67.7 5.2 38 2-39 44-82 (83)
48 d1p1ta_ d.58.7.1 (A:) Cleavage 98.4 1E-07 7.3E-12 71.2 4.5 39 3-41 50-88 (104)
49 d1jmta_ d.58.7.3 (A:) d2exfa1 g.40.1.1 (A:12-53) HIV nucleocapsid {Human immunodeficiency virus type 1, different isolates [TaxId: 11676]}
Probab=98.90 E-value=5.1e-10 Score=71.31 Aligned_cols=39 Identities=46% Similarity=1.199 Sum_probs=35.5
Q ss_pred CccccCCCCCCCCCcccCCCCCCccccCCCCCccccccCC
Q 024424 61 GRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQN 100 (268)
Q Consensus 61 ~rC~~CG~~GH~ardC~~~~~~~~cyrcg~~GH~~r~c~~ 100 (268)
++||+||..||++.+|+.+. ...||.|++.||++++|+.
T Consensus 2 i~C~~Cg~~GH~~~~Cp~~~-~~~C~~Cg~~GH~~~~Cp~ 40 (42)
T d2exfa1 2 VKCFNCGKEGHTARNCRAPR-KKGCWKCGKEGHQMKDCTE 40 (42)
T ss_dssp CCCTTTCCSSSCTTTCSSCC-CSSCSSSCCSSSCTTTCCS
T ss_pred CccccCCCcCcCcccCcCCC-cCccccCCCCCeecccCCC
Confidence 58999999999999999874 3579999999999999986
No 2
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.79 E-value=2.4e-09 Score=79.96 Aligned_cols=41 Identities=27% Similarity=0.483 Sum_probs=38.0
Q ss_pred CCCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCC
Q 024424 1 MKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (268)
Q Consensus 1 lkrGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~ 41 (268)
|.+|||||+|++.++|+.||+.|||.+|+|+.|.|+++...
T Consensus 48 i~rg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 88 (98)
T d1wf2a_ 48 VHKGFAFVQYVNERNARAAVAGEDGRMIAGQVLDINLAAEP 88 (98)
T ss_dssp EETEEEEEEESSHHHHHHHHHTTTTCEETTEECEEEETTSC
T ss_pred EeCCeEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 35899999999999999999999999999999999999753
No 3
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}
Probab=98.64 E-value=1.5e-08 Score=72.40 Aligned_cols=38 Identities=37% Similarity=0.564 Sum_probs=36.3
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 40 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~ 40 (268)
+|||||+|.+.++|+.||+.|||..|.|+.|.|++++.
T Consensus 44 ~g~afV~f~~~~~A~~ai~~lng~~~~g~~l~v~~a~p 81 (82)
T d1b7fa1 44 YGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARP 81 (82)
T ss_dssp CSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cccceEEECCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 68999999999999999999999999999999999963
No 4
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.61 E-value=2.3e-08 Score=71.34 Aligned_cols=40 Identities=35% Similarity=0.517 Sum_probs=37.4
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~ 41 (268)
.+|||||+|.+.++|+.||..|||.+|+|..|+|+|++..
T Consensus 38 ~~~~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 77 (79)
T d2bz2a1 38 PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 77 (79)
T ss_dssp TTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSS
T ss_pred CCCEEEEEEcccHHHHHHHHHhCCCEECCEEEEEEEecCC
Confidence 4699999999999999999999999999999999999743
No 5
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.60 E-value=2.7e-08 Score=71.28 Aligned_cols=39 Identities=26% Similarity=0.414 Sum_probs=36.9
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~ 41 (268)
+|||||+|.+.++|+.||+.|+|..|+|+.|.|.++...
T Consensus 41 ~g~afV~f~~~~~a~~Ai~~~~g~~~~gr~l~v~~a~~k 79 (83)
T d1x5ta1 41 KGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKK 79 (83)
T ss_dssp CSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESCCC
T ss_pred CceEEEEECCHHHHHHHHHhCCCcEECCEEEEEEEecCC
Confidence 699999999999999999999999999999999999754
No 6
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=98.60 E-value=1.7e-08 Score=72.66 Aligned_cols=38 Identities=34% Similarity=0.624 Sum_probs=36.2
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 40 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~ 40 (268)
+|||||+|.+.++|+.||..|||..|+|+.|.|+++..
T Consensus 43 kG~afV~f~~~~~A~~A~~~~~~~~~~g~~i~V~~a~~ 80 (85)
T d2cpfa1 43 MGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISER 80 (85)
T ss_dssp EEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECSSC
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 68999999999999999999999999999999999864
No 7
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.59 E-value=2.6e-08 Score=73.43 Aligned_cols=40 Identities=60% Similarity=0.973 Sum_probs=37.3
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~ 41 (268)
.+|||||+|++.++|+.||..|||.+|+|+.|.|+|++..
T Consensus 52 ~~g~afV~f~~~e~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 91 (95)
T d1x4aa1 52 GPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSG 91 (95)
T ss_dssp SSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred ccceEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeccCC
Confidence 3689999999999999999999999999999999999753
No 8
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=98.59 E-value=1.7e-08 Score=73.47 Aligned_cols=38 Identities=29% Similarity=0.507 Sum_probs=36.3
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 40 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~ 40 (268)
+|||||+|.+.++|+.||..|||..|+|+.|.|+|+..
T Consensus 49 ~g~afV~f~~~~~A~~A~~~lng~~l~g~~l~V~~a~~ 86 (88)
T d1rk8a_ 49 KGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFV 86 (88)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEE
T ss_pred ccceeEEECCHHHHHHHHHHcCCCEECCEEEEEEEecC
Confidence 68999999999999999999999999999999999974
No 9
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.58 E-value=3.1e-08 Score=72.75 Aligned_cols=40 Identities=40% Similarity=0.617 Sum_probs=37.6
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~ 41 (268)
.+|||||+|.+.++|+.||..|+|.+|+|+.|.|++|+.+
T Consensus 50 ~kg~afV~f~~~~~a~~Ai~~l~~~~~~g~~l~V~~A~~r 89 (93)
T d2cq3a1 50 SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATAR 89 (93)
T ss_dssp TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCSS
T ss_pred CcceeEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCcC
Confidence 3689999999999999999999999999999999999854
No 10
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.58 E-value=2e-08 Score=73.28 Aligned_cols=38 Identities=32% Similarity=0.450 Sum_probs=36.3
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 40 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~ 40 (268)
+|||||+|.+.++|+.||+.|+|..|.|+.|.|++++.
T Consensus 50 rg~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~akp 87 (90)
T d2cq0a1 50 KGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKP 87 (90)
T ss_dssp EEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSC
T ss_pred ccceeEEECCHHHHHHHHHHhCCCEECCEEEEEEeeeC
Confidence 68999999999999999999999999999999999974
No 11
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.58 E-value=1.5e-08 Score=73.93 Aligned_cols=40 Identities=20% Similarity=0.308 Sum_probs=37.4
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~ 41 (268)
.+|||||+|.+.++|+.||..|||++|+|+.|.|+++...
T Consensus 39 ~kg~afV~f~~~~~A~~Ai~~ln~~~~~G~~l~V~~a~~~ 78 (88)
T d1wg1a_ 39 NKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp GGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred cCCceEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence 4799999999999999999999999999999999999643
No 12
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]}
Probab=98.57 E-value=2.9e-08 Score=70.60 Aligned_cols=38 Identities=26% Similarity=0.280 Sum_probs=35.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEecc
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 39 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~ 39 (268)
.+|||||+|.+.++|+.||..|||..|+|+.|.|+++.
T Consensus 40 ~~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~l~V~~a~ 77 (78)
T d1no8a_ 40 SLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 77 (78)
T ss_dssp SCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred cceeEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 36899999999999999999999999999999999985
No 13
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.57 E-value=3.2e-08 Score=72.79 Aligned_cols=41 Identities=29% Similarity=0.323 Sum_probs=37.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCCC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~~ 42 (268)
.+|||||+|.+.++|+.||..|+|+.|.|+.|+|.+|....
T Consensus 50 ~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~A~~~~ 90 (93)
T d1x5ua1 50 HQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASAHN 90 (93)
T ss_dssp BCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTTTS
T ss_pred cccceEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCCC
Confidence 46899999999999999999999999999999999997543
No 14
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId: 5693]}
Probab=98.57 E-value=4.5e-08 Score=76.86 Aligned_cols=40 Identities=33% Similarity=0.520 Sum_probs=37.3
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~~ 42 (268)
+|||||+|.+.++|+.||+.|||.+|+|+.|.|+++....
T Consensus 84 rg~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~~~~ 123 (139)
T d1u6fa1 84 RGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASGH 123 (139)
T ss_dssp EEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESSCCC
T ss_pred cceeeEEECCHHHHHHHHHHhCCCEECCEEEEEEEcCCCC
Confidence 6899999999999999999999999999999999997543
No 15
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.57 E-value=2.9e-08 Score=72.97 Aligned_cols=40 Identities=30% Similarity=0.460 Sum_probs=37.2
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~~ 42 (268)
+|||||+|.+.++|+.||..|||..|+|+.|.|+|+.+..
T Consensus 49 kg~afV~f~~~~~A~~Ai~~l~g~~~~gr~i~V~~a~~~~ 88 (93)
T d1h2vz_ 49 CGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFK 88 (93)
T ss_dssp EEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEESCCC
T ss_pred cceEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcCCCC
Confidence 5899999999999999999999999999999999997543
No 16
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.56 E-value=3e-08 Score=73.43 Aligned_cols=40 Identities=35% Similarity=0.545 Sum_probs=37.5
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~~ 42 (268)
+|||||+|.+.++|+.||..|||.+|+|+.|.|.+++..+
T Consensus 58 ~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~a~~~~ 97 (101)
T d2cpea1 58 KGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKP 97 (101)
T ss_dssp CSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECSSCCC
T ss_pred cceeeEEecCHHHHHHHHHHhCCCEECCEEEEEEEcCCCC
Confidence 5899999999999999999999999999999999998643
No 17
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=98.56 E-value=3.5e-08 Score=69.79 Aligned_cols=39 Identities=15% Similarity=0.227 Sum_probs=37.1
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 40 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~ 40 (268)
.+|||||+|.+.++|+.||+.|||.+|.|+.|.|+++..
T Consensus 32 ~~g~afv~f~~~~~A~~Ai~~ln~~~~~g~~l~V~~a~~ 70 (75)
T d1wi6a1 32 YKGTAFVTLLNGEQAEAAINTFHQSRLRERELSVQLQPT 70 (75)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCS
T ss_pred cceeEEEEECCHHHHHHHHHHhCCccCCCCEEEEEEeCC
Confidence 579999999999999999999999999999999999964
No 18
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.56 E-value=1.3e-08 Score=74.22 Aligned_cols=39 Identities=21% Similarity=0.394 Sum_probs=36.9
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~ 41 (268)
+|||||+|++.++|+.||+.|||..|+|+.|.|++++..
T Consensus 48 kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~V~~a~~~ 86 (89)
T d1cvja2 48 KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 86 (89)
T ss_dssp CSCEEEEESCHHHHHHHTTSSSEEEETTEEEEEEECCCT
T ss_pred cceeEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 699999999999999999999999999999999999753
No 19
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.55 E-value=2.6e-08 Score=71.05 Aligned_cols=37 Identities=38% Similarity=0.672 Sum_probs=35.7
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEecc
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 39 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~ 39 (268)
+|||||+|.+.++|+.||..|+|..|.|+.|.|++++
T Consensus 44 ~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~Ak 80 (82)
T d1fxla1 44 LGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (82)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred eeeEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 5899999999999999999999999999999999986
No 20
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.55 E-value=3.4e-08 Score=73.13 Aligned_cols=39 Identities=26% Similarity=0.508 Sum_probs=37.0
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~ 41 (268)
+|||||+|.+.++|+.||..|+|.+|.|+.|+|.|++..
T Consensus 54 kg~afV~f~~~~~A~~Ai~~l~~~~i~g~~l~v~~ak~~ 92 (96)
T d1x4ga1 54 KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES 92 (96)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence 799999999999999999999999999999999998754
No 21
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=98.55 E-value=6e-08 Score=71.86 Aligned_cols=41 Identities=27% Similarity=0.302 Sum_probs=37.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCCC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~~ 42 (268)
.+|||||+|.+.++|+.||..|||..|+|+.|.|.++....
T Consensus 49 ~~g~afV~f~~~~~a~~A~~~l~g~~~~gr~i~V~~a~~~~ 89 (99)
T d1whwa_ 49 PKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKK 89 (99)
T ss_dssp CCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCCS
T ss_pred cCcceEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 36899999999999999999999999999999999998643
No 22
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=98.54 E-value=4.1e-08 Score=72.28 Aligned_cols=40 Identities=33% Similarity=0.597 Sum_probs=37.0
Q ss_pred CCCeEEEEeCCHHHHHHHHHhh-CCCeecCcceEEEeccCC
Q 024424 2 KRDFAFVEFSDPRDADDARYSL-NGRDVDGSRIIVEFARGG 41 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~l-dG~~l~Gr~IrVe~a~~~ 41 (268)
.+|||||+|.+.++|+.||..| +|..|+|+.|.|+|+...
T Consensus 50 ~rg~afV~f~~~~~A~~Ai~~l~~~~~~~Gr~l~V~~A~~~ 90 (94)
T d2cpha1 50 HRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADSE 90 (94)
T ss_dssp SCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECCCC
T ss_pred cccEEEEEECCHHHHHHHHHHccCCcEECCEEEEEEEcCCC
Confidence 3699999999999999999998 899999999999999753
No 23
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}
Probab=98.54 E-value=3.2e-08 Score=73.05 Aligned_cols=40 Identities=20% Similarity=0.440 Sum_probs=37.4
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~~ 42 (268)
+|||||+|.+.++|+.||..|+|..|+|+.|.|+|+....
T Consensus 53 ~~~afV~f~~~~~A~~A~~~l~~~~~~gr~i~V~~a~~k~ 92 (96)
T d1fjca_ 53 KGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKG 92 (96)
T ss_dssp EEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSC
T ss_pred ccEEEEEeCCHHHHHHHHHHcCCCEECCEEEEEEEeCCCC
Confidence 6899999999999999999999999999999999998543
No 24
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=98.53 E-value=3.9e-08 Score=70.14 Aligned_cols=38 Identities=24% Similarity=0.511 Sum_probs=35.8
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEecc
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 39 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~ 39 (268)
.+|||||+|.+.++|+.||..|||..|+|+.|.|.++.
T Consensus 42 ~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~i~V~~a~ 79 (81)
T d2ghpa1 42 SRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN 79 (81)
T ss_dssp -CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccceeEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 46999999999999999999999999999999999986
No 25
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.53 E-value=4.4e-08 Score=70.68 Aligned_cols=41 Identities=46% Similarity=0.633 Sum_probs=37.8
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCCC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~~ 42 (268)
.+|||||+|.+.++|..||..|+|..|.|+.|.|.|++...
T Consensus 43 ~rg~afV~f~~~~~A~~Ai~~l~~~~i~g~~i~V~~akP~~ 83 (86)
T d2cpda1 43 IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVD 83 (86)
T ss_dssp CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCCC
T ss_pred ccEEEEEEeCCHHHHHHHHHHcCCCEECCEEEEEEeccCCC
Confidence 47999999999999999999999999999999999997543
No 26
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.53 E-value=4.1e-08 Score=71.39 Aligned_cols=40 Identities=43% Similarity=0.678 Sum_probs=37.4
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~ 41 (268)
.+|||||+|.+.++|+.||..|+|..|.|+.|.|+++...
T Consensus 46 ~~g~afV~f~~~~~a~~Ai~~l~~~~~~g~~l~V~~a~~~ 85 (90)
T d1x5sa1 46 SRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKS 85 (90)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEECC
T ss_pred ccceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCC
Confidence 4789999999999999999999999999999999999754
No 27
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.52 E-value=3.3e-08 Score=73.92 Aligned_cols=39 Identities=31% Similarity=0.529 Sum_probs=36.9
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~ 41 (268)
+|||||+|.+.++|+.||..|||.+|.|+.|.|+++...
T Consensus 60 kG~afV~f~~~~~A~~Ai~~lng~~~~g~~i~V~~a~~k 98 (102)
T d2cpza1 60 KCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSK 98 (102)
T ss_dssp EEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCCCS
T ss_pred ccceEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEeCCC
Confidence 589999999999999999999999999999999999754
No 28
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.52 E-value=4e-08 Score=73.71 Aligned_cols=39 Identities=28% Similarity=0.449 Sum_probs=36.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 40 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~ 40 (268)
++|||||+|++.++|+.||+.|+|..|+|+.|.|++++.
T Consensus 39 ~kg~afV~f~~~~~A~~ai~~lng~~l~g~~l~v~~s~~ 77 (109)
T d2adca1 39 KKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 77 (109)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSC
T ss_pred ccceEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 479999999999999999999999999999999999864
No 29
>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.52 E-value=2.8e-08 Score=72.11 Aligned_cols=40 Identities=18% Similarity=0.160 Sum_probs=36.6
Q ss_pred CCCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccC
Q 024424 1 MKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 40 (268)
Q Consensus 1 lkrGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~ 40 (268)
+++|||||+|.+.++|+.||..|||.+|.|+.|.|.++..
T Consensus 33 ~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~i~v~~~~~ 72 (87)
T d3begb1 33 YRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 72 (87)
T ss_dssp CTTSEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEE
T ss_pred cccceeeEEeCCHHHHHHHHHHhCCCEECCcEeEEeEEec
Confidence 3579999999999999999999999999999999988753
No 30
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.51 E-value=2.7e-08 Score=71.01 Aligned_cols=37 Identities=24% Similarity=0.486 Sum_probs=35.6
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEecc
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 39 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~ 39 (268)
+|||||+|.++++|+.||+.|+|..|.|+.|+|.+++
T Consensus 42 ~g~aFV~f~~~~~a~~ai~~l~g~~~~gr~i~v~~a~ 78 (80)
T d1cvja1 42 LGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 78 (80)
T ss_dssp EEEEEEEESSHHHHHHHHTTSTTCEETTEECEEEECC
T ss_pred CCceEEEECCHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence 5899999999999999999999999999999999985
No 31
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.50 E-value=5.3e-08 Score=69.54 Aligned_cols=40 Identities=28% Similarity=0.490 Sum_probs=36.8
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCC-eecCcceEEEeccCC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGR-DVDGSRIIVEFARGG 41 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~-~l~Gr~IrVe~a~~~ 41 (268)
.+|||||+|.+.++|+.||+.|+|. +|+|+.|.|+++...
T Consensus 36 ~rg~aFV~f~~~~~A~~Ai~~lng~~~~~G~~i~V~~a~~k 76 (80)
T d2cqha1 36 KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSK 76 (80)
T ss_dssp ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCC
T ss_pred ccceEEEEECCHHHHHHHHHHhCCCeEECCEEEEEEEcCCc
Confidence 4799999999999999999999996 699999999999753
No 32
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.49 E-value=5.6e-08 Score=73.63 Aligned_cols=38 Identities=29% Similarity=0.371 Sum_probs=36.1
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 40 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~ 40 (268)
+|||||+|.+.++|..||+.|+|..|.|+.|.|+++..
T Consensus 46 kG~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~~ 83 (114)
T d2f9da1 46 RGTAYVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYNA 83 (114)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCH
T ss_pred CCeEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 69999999999999999999999999999999999853
No 33
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.48 E-value=5.2e-08 Score=70.87 Aligned_cols=39 Identities=38% Similarity=0.518 Sum_probs=36.8
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 40 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~ 40 (268)
.+|||||+|.+.++|+.||..|||..|+|+.|.|+++..
T Consensus 46 ~kg~afV~f~~~~~A~~ai~~l~~~~i~g~~l~v~~a~p 84 (89)
T d2cqba1 46 HRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKP 84 (89)
T ss_dssp CSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred ccceeEEEECCHHHHHHHHHHcCCCEECCEEEEEEEeCC
Confidence 479999999999999999999999999999999999974
No 34
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=98.47 E-value=4.8e-08 Score=70.69 Aligned_cols=39 Identities=23% Similarity=0.259 Sum_probs=35.7
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~ 41 (268)
.+|||||+|.+.++|+.||. |||.+|.|+.|.|.++...
T Consensus 47 ~kg~afV~f~~~~~a~~Al~-~n~~~~~gr~l~V~~a~~k 85 (86)
T d2ghpa3 47 NNCCAFMVFENKDSAERALQ-MNRSLLGNREISVSLADKK 85 (86)
T ss_dssp CCEEEEEEESSHHHHHHHGG-GTTEEETTEEEEEEECCCC
T ss_pred cceeeeEEECCHHHHHHHHh-cCCCEECCEEEEEEEcCCC
Confidence 36899999999999999995 9999999999999999754
No 35
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.46 E-value=7.7e-08 Score=69.47 Aligned_cols=41 Identities=29% Similarity=0.494 Sum_probs=37.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCCC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~~ 42 (268)
.+|||||+|.+.++|+.||..|+|.+|.|+.|.|+++....
T Consensus 42 ~rg~aFV~f~~~~~A~~a~~~l~~~~l~g~~l~V~~A~~~~ 82 (85)
T d2u2fa_ 42 SKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 82 (85)
T ss_dssp CCCEEEEEESSSHHHHHHHHTSSSCCCSSSCCEEEECCCCC
T ss_pred cceeEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCC
Confidence 36999999999999999999999999999999999997543
No 36
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.46 E-value=8.1e-08 Score=71.20 Aligned_cols=40 Identities=28% Similarity=0.410 Sum_probs=37.4
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~ 41 (268)
.+|||||+|.+.++|+.||..|||..|.|+.|.|+|++..
T Consensus 59 ~~g~~fV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ak~k 98 (102)
T d2cpxa1 59 MRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKNK 98 (102)
T ss_dssp SCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECCCC
T ss_pred ccccceEEeccHHHHHHHHHHhCCCEECCEEEEEEeCCCc
Confidence 3689999999999999999999999999999999999754
No 37
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9 (SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=98.45 E-value=6.9e-08 Score=71.73 Aligned_cols=40 Identities=18% Similarity=0.171 Sum_probs=37.5
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~ 41 (268)
++|||||+|.+.++|+.||+.|||.+|+|+.|.|.+++..
T Consensus 49 ~~g~afV~f~~~~~a~~Ai~~lng~~~~g~~i~v~~~~~~ 88 (98)
T d1wg4a_ 49 KDGMGMVEYLRKEDMEYALRKLDDTKFRSHEGETSYIRVY 88 (98)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHSSEEEECTTSCEEEEEEE
T ss_pred ccceEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEEecC
Confidence 5799999999999999999999999999999999998754
No 38
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.45 E-value=1e-07 Score=69.43 Aligned_cols=40 Identities=35% Similarity=0.579 Sum_probs=37.2
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~ 41 (268)
.+|||||+|.+.++|+.||..|+|..|.|+.|+|.|+...
T Consensus 47 ~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~~~ 86 (90)
T d2cqia1 47 NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTP 86 (90)
T ss_dssp SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCT
T ss_pred cceeeEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCC
Confidence 4689999999999999999999999999999999999743
No 39
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=98.44 E-value=1.6e-07 Score=70.58 Aligned_cols=40 Identities=28% Similarity=0.331 Sum_probs=37.3
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~~ 42 (268)
++||||+|.+.++|+.||..|+|+.|+|+.|.|+|++...
T Consensus 46 ~~~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~~~~ 85 (104)
T d1weya_ 46 FKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTLH 85 (104)
T ss_dssp TTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCCSS
T ss_pred CCEEEEEECCHHHHHHHHHHhcccccCCCEeEEeecccCC
Confidence 5899999999999999999999999999999999997543
No 40
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]}
Probab=98.44 E-value=7.7e-08 Score=69.69 Aligned_cols=38 Identities=24% Similarity=0.416 Sum_probs=36.4
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 40 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~ 40 (268)
+|||||+|++.++|+.||..|+|..|+|+.|.|++|..
T Consensus 44 k~~afV~f~~~~~A~~A~~~l~g~~i~g~~l~V~~A~~ 81 (86)
T d2cpja1 44 KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACH 81 (86)
T ss_dssp TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSC
T ss_pred cceEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 68999999999999999999999999999999999974
No 41
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=98.43 E-value=8.9e-08 Score=71.90 Aligned_cols=40 Identities=28% Similarity=0.249 Sum_probs=37.1
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~ 41 (268)
.+|||||+|.+.++|+.||..|||..|.|+.|.|+|+...
T Consensus 45 ~kg~afV~f~~~~~A~~A~~~lng~~~~gr~l~v~~a~~~ 84 (111)
T d1whxa_ 45 GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred cCceEEEEEcCHHHHHHHHHHHcCCccCCCeEEEEECCCC
Confidence 3689999999999999999999999999999999998643
No 42
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}
Probab=98.43 E-value=7.5e-08 Score=70.54 Aligned_cols=38 Identities=34% Similarity=0.589 Sum_probs=35.3
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 40 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~ 40 (268)
.+|||||+|.+.++|+.||+ |+|.+|.|+.|.|++++.
T Consensus 53 ~kg~afv~F~~~e~a~~Al~-~~g~~~~g~~i~V~~ak~ 90 (91)
T d1fjeb1 53 NRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKG 90 (91)
T ss_dssp TTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECCCC
T ss_pred ccEEeEEeeCCHHHHHHHHh-cCCcEECCEEEEEEecCC
Confidence 36999999999999999995 999999999999999874
No 43
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.42 E-value=1.2e-07 Score=69.18 Aligned_cols=39 Identities=26% Similarity=0.366 Sum_probs=36.9
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~ 41 (268)
+|||||+|++.++|..||..|+|.+|+|+.|.|.|++..
T Consensus 46 ~g~afV~F~~~~~A~~A~~~~~~~~~~g~~l~v~~ak~~ 84 (91)
T d1nu4a_ 46 RGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTD 84 (91)
T ss_dssp TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSSC
T ss_pred CCceEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeCCC
Confidence 699999999999999999999999999999999999753
No 44
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.42 E-value=1.3e-07 Score=70.40 Aligned_cols=41 Identities=32% Similarity=0.423 Sum_probs=37.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCCC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~~ 42 (268)
.+|||||+|++.++|..||..|||..|+|+.|.|+++.+..
T Consensus 56 ~~G~~fV~f~~~e~A~~A~~~lng~~~~gr~i~v~~~~g~~ 96 (99)
T d2dita1 56 PDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTT 96 (99)
T ss_dssp TTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCSCC
T ss_pred CccEEEEEECCHHHHHHHHHHhCCcEECCEEEEEEEeCCcC
Confidence 36999999999999999999999999999999999987643
No 45
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=98.41 E-value=9.7e-08 Score=68.73 Aligned_cols=37 Identities=22% Similarity=0.323 Sum_probs=34.7
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEec
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 38 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a 38 (268)
.+|||||+|.+.++|+.||.+|||..|.|+.|.|.++
T Consensus 50 ~~G~afV~f~~~e~a~~Ai~~l~~~~l~gr~i~v~l~ 86 (86)
T d2cqpa1 50 PTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 86 (86)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred cceEEEEEEcCcHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 3689999999999999999999999999999999875
No 46
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.40 E-value=1.4e-07 Score=68.23 Aligned_cols=38 Identities=21% Similarity=0.454 Sum_probs=35.4
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCee-cCcceEEEeccC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDV-DGSRIIVEFARG 40 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l-~Gr~IrVe~a~~ 40 (268)
+|||||+|++.++|+.||..|+|..| +|+.|+|.|++.
T Consensus 48 ~~~afV~f~~~~~A~~A~~~l~~~~i~~g~~l~v~~sk~ 86 (88)
T d2adca2 48 RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 86 (88)
T ss_dssp TTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred cceeEEEECCHHHHHHHHHhccCCEecCCCEEEEEeCCC
Confidence 68999999999999999999999988 689999999874
No 47
>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila melanogaster [TaxId: 7227]}
Probab=98.40 E-value=1.4e-07 Score=67.65 Aligned_cols=38 Identities=29% Similarity=0.561 Sum_probs=34.9
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeec-CcceEEEecc
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVD-GSRIIVEFAR 39 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~-Gr~IrVe~a~ 39 (268)
++|||||+|.+.++|+.||..|+|..|. |..|.|.|++
T Consensus 44 ~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~i~v~~ak 82 (83)
T d2b0ga1 44 RHDIAFVEFTTELQSNAAKEALQGFKITPTHAMKITFAK 82 (83)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHTTCBSSTTCBCEEEECC
T ss_pred cceeEEEecCCHHHHHHHHHHhCCcEeCCCcEEEEEEec
Confidence 4689999999999999999999999984 6899999986
No 48
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.40 E-value=1e-07 Score=71.16 Aligned_cols=39 Identities=31% Similarity=0.521 Sum_probs=36.5
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~ 41 (268)
+|||||+|.+.++|+.||..|+|..|.|+.|.|+++...
T Consensus 50 ~g~afV~f~~~~~a~~ai~~l~~~~~~g~~i~V~~a~~~ 88 (104)
T d1p1ta_ 50 KGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASE 88 (104)
T ss_dssp EEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTCT
T ss_pred CCceEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 589999999999999999999999999999999998643
No 49
>d1jmta_ d.58.7.3 (A:) U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.38 E-value=9.5e-08 Score=71.88 Aligned_cols=37 Identities=30% Similarity=0.399 Sum_probs=35.0
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEec
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 38 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a 38 (268)
.+|||||+|.+.++|+.||..|||.+|+|+.|.|++.
T Consensus 67 ~~G~~fV~f~~~~~A~~Ai~~lng~~~~gr~i~v~~s 103 (104)
T d1jmta_ 67 LVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELS 103 (104)
T ss_dssp SEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEEC
T ss_pred EeeEEEEEEechhHHHHHHHHHCCCEECCEEEEEEEC
Confidence 3699999999999999999999999999999999985
No 50
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}
Probab=98.37 E-value=1.3e-07 Score=67.98 Aligned_cols=36 Identities=31% Similarity=0.468 Sum_probs=33.6
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecC--cceEEEec
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDG--SRIIVEFA 38 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~G--r~IrVe~a 38 (268)
+|||||+|.+.++|+.||+.|||..|.| +.|.|.||
T Consensus 48 ~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~V~~A 85 (85)
T d1b7fa2 48 RGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 85 (85)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred ceeEEEEECCHHHHHHHHHHHCCCEeCCCCeEEEEEEC
Confidence 5899999999999999999999999987 77999986
No 51
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=98.32 E-value=1.8e-07 Score=68.03 Aligned_cols=33 Identities=27% Similarity=0.291 Sum_probs=31.6
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEE
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIV 35 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrV 35 (268)
.|||||+|++.++|+.||+.|||..|+|+.|+|
T Consensus 56 ~g~aFV~f~~~~~A~~Ai~~lng~~~~gr~lkv 88 (89)
T d2cpia1 56 SASAYVTYIRSEDALRAIQCVNNVVVDGRTLKA 88 (89)
T ss_dssp CEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred ceEEEEecccchhHHHHHHHhCCCEECCEEEEE
Confidence 489999999999999999999999999999987
No 52
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.32 E-value=2.1e-07 Score=66.97 Aligned_cols=36 Identities=36% Similarity=0.637 Sum_probs=33.0
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCc--ceEEEec
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGS--RIIVEFA 38 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr--~IrVe~a 38 (268)
+|||||+|.+.++|+.||..|||..|.|. .|.|.||
T Consensus 48 kg~afV~f~~~~~a~~Ai~~lng~~~~G~~~~i~V~~A 85 (85)
T d1fxla2 48 RGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 85 (85)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCeeEEEEcCHHHHHHHHHHhCCCEeCCCCEEEEEEeC
Confidence 58999999999999999999999999985 5888886
No 53
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.31 E-value=1.6e-07 Score=67.11 Aligned_cols=33 Identities=48% Similarity=0.753 Sum_probs=31.6
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEE
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIV 35 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrV 35 (268)
+|||||+|.+.++|+.||..|||.+|+|+.|+|
T Consensus 51 ~g~afV~f~~~~~A~~Ai~~l~g~~~~gr~i~V 83 (83)
T d2cqca1 51 RGFAFVYFENVDDAKEAKERANGMELDGRRIRV 83 (83)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred ccceEEEECCHHHHHHHHHHcCCCEECCEEeEC
Confidence 589999999999999999999999999999987
No 54
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.31 E-value=2e-07 Score=69.43 Aligned_cols=40 Identities=18% Similarity=0.055 Sum_probs=36.0
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCCC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~~ 42 (268)
.+|||||+|.+.++|+.||+ ||+.+|.|+.|.|.++....
T Consensus 54 ~~G~afVeF~~~~~a~~Al~-~~~~~i~gR~I~V~~s~~~~ 93 (102)
T d1weza_ 54 VTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNSTAG 93 (102)
T ss_dssp EEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEECCCC
T ss_pred ceEEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEcCCCC
Confidence 36899999999999999985 89999999999999987543
No 55
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=98.30 E-value=3.4e-07 Score=63.86 Aligned_cols=36 Identities=17% Similarity=0.295 Sum_probs=33.4
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEec
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 38 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a 38 (268)
.+|||||+|.+.++|+.||+ |+|..|+|+.|.|.+|
T Consensus 40 ~~~~afV~F~~~~~a~~al~-~~~~~l~gr~i~V~~A 75 (75)
T d2msta_ 40 HRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp SCCEEEEECSCHHHHHHHHH-CSSCCBTTBCCEEEEC
T ss_pred cCceeEEEECCHHHHHHHHh-cCCCEECCeEEEEEEC
Confidence 46899999999999999995 9999999999999875
No 56
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b {Mouse (Mus musculus) [TaxId: 10090]}
Probab=98.27 E-value=5.4e-07 Score=66.37 Aligned_cols=40 Identities=30% Similarity=0.635 Sum_probs=36.1
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCc--ceEEEeccCCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGS--RIIVEFARGGP 42 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr--~IrVe~a~~~~ 42 (268)
++||||+|.+.++|+.||+.|+|.+|.|. .|+|+|++..+
T Consensus 53 ~~~afV~f~~~~~A~~A~~~l~~~~i~g~~~~l~v~~ak~~~ 94 (97)
T d1whya_ 53 DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSGP 94 (97)
T ss_dssp SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCCC
T ss_pred ccEEEeccCCHHHHHHHHHHhCCCEeCCCceEEEEEeCCCCC
Confidence 68999999999999999999999999874 79999998544
No 57
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=98.27 E-value=4.9e-07 Score=66.18 Aligned_cols=41 Identities=22% Similarity=0.369 Sum_probs=36.2
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhC------CCeecCcceEEEeccCCC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLN------GRDVDGSRIIVEFARGGP 42 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ld------G~~l~Gr~IrVe~a~~~~ 42 (268)
.+|||||+|.+.++|+.||..|+ |..|+|+.|.|+++..+.
T Consensus 49 ~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~gr~l~v~~a~~k~ 95 (98)
T d1x4ha1 49 SKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTRD 95 (98)
T ss_dssp BCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCCCCC
T ss_pred ccceEEEEEcCHHHHHHHHHHcccccccCCcEECCEEEEEEECCCCC
Confidence 47999999999999999999886 678999999999997543
No 58
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.26 E-value=2.5e-07 Score=69.02 Aligned_cols=37 Identities=30% Similarity=0.466 Sum_probs=34.4
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEecc
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 39 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~ 39 (268)
.+|||||+|.+.++|+.|| .|||..|.|+.|.|.++.
T Consensus 59 ~kG~afV~F~~~e~a~~A~-~l~g~~~~G~~l~V~~a~ 95 (101)
T d2cq4a1 59 SKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 95 (101)
T ss_dssp CCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred ccceEEEEECCHHHHHHHH-HHCCCEECCEEEEEEECC
Confidence 4789999999999999999 599999999999999875
No 59
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.25 E-value=6e-07 Score=66.70 Aligned_cols=40 Identities=30% Similarity=0.407 Sum_probs=34.8
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCCC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~~ 42 (268)
.+|||||+|.+.++|+.|+ .|+|.+|+|+.|+|.++....
T Consensus 56 ~~g~afV~f~~~e~a~~~~-~~~~~~~~gr~l~V~~a~~~~ 95 (104)
T d1wi8a_ 56 LKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVADQAQ 95 (104)
T ss_dssp BCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEECCCCC
T ss_pred cceeeeEEECCHHHHHHHH-HcCCCEECCEEEEEEECCCCC
Confidence 3689999999999997665 799999999999999987543
No 60
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.23 E-value=8.4e-07 Score=66.06 Aligned_cols=39 Identities=31% Similarity=0.414 Sum_probs=35.2
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~ 41 (268)
.+|||||+|.+.++|+.||+.|++ .|+|+.|.|.++...
T Consensus 51 ~kg~afV~f~~~~~A~~Ai~~~~~-~l~Gr~l~V~~a~~~ 89 (103)
T d2cqda1 51 SRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLAYLG 89 (103)
T ss_dssp CCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEESTTT
T ss_pred cCCeEEEEECCHHHHHHHHHHCCC-cCCCEEEEEEEcCCC
Confidence 379999999999999999999876 799999999998754
No 61
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif, single-stranded-interacting protein 1, RBMS1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.19 E-value=2.5e-07 Score=68.72 Aligned_cols=37 Identities=11% Similarity=0.182 Sum_probs=34.2
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEecc
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 39 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~ 39 (268)
+|||||+|.+.++|+.||+.|||.+|.|+.|.|.++.
T Consensus 59 ~g~afV~f~~~~~A~~Ai~~lng~~i~gr~~~v~~~~ 95 (101)
T d1x5oa1 59 RGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 95 (101)
T ss_dssp EEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred ccceeEEeCCHHHHHHHHHHhCCCEECCcCCccCCCC
Confidence 5899999999999999999999999999998887664
No 62
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.17 E-value=7.4e-07 Score=62.57 Aligned_cols=36 Identities=25% Similarity=0.363 Sum_probs=32.2
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEec
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 38 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a 38 (268)
.+|||||+|.+.++|+.||. +++..|+|+.|.|..|
T Consensus 40 ~kg~afV~f~~~~~a~~Al~-~~~~~l~Gr~i~V~rA 75 (75)
T d1hd0a_ 40 SRGFGFVLFKESESVDKVMD-QKEHKLNGKVIDPKRA 75 (75)
T ss_dssp CCSEEEEEESSHHHHHHHHH-TCCCCBTTBCCEECCC
T ss_pred cCceEEEEECCHHHHHHHHh-cCCCEECCCEEEeeEC
Confidence 36999999999999999996 8999999999998643
No 63
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=98.17 E-value=5.3e-07 Score=63.82 Aligned_cols=36 Identities=28% Similarity=0.407 Sum_probs=33.3
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEec
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 38 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a 38 (268)
.+|||||+|.+.++|+.||. |++..|+|+.|.|..|
T Consensus 41 ~kG~aFV~f~~~~~a~~al~-~~~~~i~Gr~i~V~~A 76 (77)
T d1uawa_ 41 SRGFGFVTFMDQAGVDKVLA-QSRHELDSKTIDPKVA 76 (77)
T ss_dssp CSSEEEECCCCTTHHHHHHH-TTTCCCSSCCCEEEEC
T ss_pred ccceEEEEECCHHHHHHHHH-cCCCEECCeEEEEEEC
Confidence 47999999999999999996 7999999999999876
No 64
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.14 E-value=8.3e-07 Score=62.54 Aligned_cols=36 Identities=36% Similarity=0.435 Sum_probs=32.1
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEec
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 38 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a 38 (268)
.+|||||+|.+.++|+.|| +|+|.+|+|+.|.|..|
T Consensus 43 ~~g~afV~f~~~e~~~~al-~~~~~~l~Gr~i~V~~A 78 (79)
T d1l3ka2 43 KRGFAFVTFDDHDSVDKIV-IQKYHTVNGHNCEVRKA 78 (79)
T ss_dssp EEEEEEEEESSHHHHHHHH-HCSCCEETTEECEEEEC
T ss_pred cccEEEEEEcCHHHHHHHH-HhCCCEECCEEEEEEEC
Confidence 3689999999998888887 69999999999999876
No 65
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.13 E-value=1.2e-06 Score=64.26 Aligned_cols=40 Identities=38% Similarity=0.493 Sum_probs=34.8
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCC--CeecCcceEEEeccCC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNG--RDVDGSRIIVEFARGG 41 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG--~~l~Gr~IrVe~a~~~ 41 (268)
.+|||||+|.+.++|+.||+.|++ ..+.|+.|.|.||...
T Consensus 44 ~rg~aFV~F~~~~~A~~Ai~~l~~~~~~~~g~~i~V~~A~p~ 85 (96)
T d2disa1 44 NRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPE 85 (96)
T ss_dssp TCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEESCSS
T ss_pred CCCeEEEEEcCHHHHHHHHHHHcCCCeEECCEEEEEEEcCCC
Confidence 368999999999999999999964 5667999999999753
No 66
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.11 E-value=7.3e-07 Score=66.19 Aligned_cols=37 Identities=22% Similarity=0.374 Sum_probs=34.2
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEecc
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 39 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~ 39 (268)
.+|||||+|.+.++|+.||. |+|..|+|+.|.|.++.
T Consensus 49 ~~G~afV~F~s~~~a~~Al~-~n~~~i~gr~i~V~~~~ 85 (103)
T d2cpya1 49 GLGQALVQFKNEDDARKSER-LHRKKLNGREAFVHVVT 85 (103)
T ss_dssp CSSCEEEECSSHHHHHHHGG-GCSEEETTEEEEEEEEC
T ss_pred cCccEEEEECCHHHHHHHHh-cCCCeECCcEEEEEECC
Confidence 47999999999999999995 99999999999999875
No 67
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.10 E-value=1.4e-06 Score=65.15 Aligned_cols=39 Identities=28% Similarity=0.392 Sum_probs=35.2
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~ 41 (268)
.+|||||+|.+.++|+.|| +|+|..|+|+.|.|.+|...
T Consensus 61 ~kg~aFV~f~~~~~a~~al-~~~~~~l~G~~i~V~~a~~k 99 (103)
T d1x4ba1 61 SRGFGFVTFSSMAEVDAAM-AARPHSIDGRVVEPKRAVAR 99 (103)
T ss_dssp CCSEEEEECSSHHHHHHHH-TSCSEEETTEEEEEECCSSC
T ss_pred ccCeEEEEECCHHHHHHHH-HhCCCeECCEEEEEEECccc
Confidence 4699999999999999998 58999999999999998754
No 68
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.10 E-value=9.1e-07 Score=66.31 Aligned_cols=38 Identities=24% Similarity=0.528 Sum_probs=34.2
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCee--cCcceEEEeccC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDV--DGSRIIVEFARG 40 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l--~Gr~IrVe~a~~ 40 (268)
+|||||+|.+.++|+.||+.|+|..| .+..|.|.+++.
T Consensus 45 ~g~aFV~f~~~e~A~~Ai~~ln~~~l~~~~~~l~v~~s~~ 84 (108)
T d2adba1 45 QFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 84 (108)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHSCCSSTTCCCCEEEECSS
T ss_pred CCeEEEEECCHHHHHHHHHHHCCCEeccCCcEEEEEecCC
Confidence 68999999999999999999999998 467888888864
No 69
>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.09 E-value=1.5e-06 Score=64.92 Aligned_cols=37 Identities=24% Similarity=0.405 Sum_probs=35.2
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEecc
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 39 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~ 39 (268)
.|++||+|.+.++|.+|+..|+|..|+|+.|.|.++.
T Consensus 58 ~g~vfV~f~~~e~A~~A~~~l~Gr~f~gR~v~v~f~~ 94 (104)
T d1o0pa_ 58 CGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCD 94 (104)
T ss_dssp CCEEEEEESCHHHHHHHHHHHSSCCSSSSCCEEEEEC
T ss_pred ceEEEEEECCHHHHHHHHHHHCCCEECCeEEEEEEcC
Confidence 4899999999999999999999999999999999975
No 70
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=98.08 E-value=1.6e-06 Score=60.91 Aligned_cols=35 Identities=29% Similarity=0.234 Sum_probs=32.4
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEec
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 38 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a 38 (268)
++||||+|.+.++|+.|| .|++..|+|+.|.|+.+
T Consensus 40 ~~~afV~F~~~~~a~~Al-~~~~~~i~g~~i~V~~~ 74 (75)
T d2ghpa2 40 FRFARIEFARYDGALAAI-TKTHKVVGQNEIIVSHL 74 (75)
T ss_dssp SEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEEC
T ss_pred ceEEEEEEcchHHhHHHH-HhcCcEECCEEEEEEEC
Confidence 579999999999999998 69999999999999875
No 71
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif, single-stranded-interacting protein 2, RBMS2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.07 E-value=4e-07 Score=63.19 Aligned_cols=33 Identities=24% Similarity=0.433 Sum_probs=30.5
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceE
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRII 34 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~Ir 34 (268)
.+|||||+|.+.++|+.||..|||..|+|+.|+
T Consensus 39 ~~g~afV~f~~~~~A~~Ai~~lng~~~~Gr~~k 71 (72)
T d1x4ea1 39 CKGYGFVDFDSPSAAQKAVTALKASGVQAQMAK 71 (72)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHTCCEESCC
T ss_pred ccceeEEEECCHHHHHHHHHHhCCCEECCEECc
Confidence 469999999999999999999999999998764
No 72
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.07 E-value=1.6e-06 Score=64.53 Aligned_cols=39 Identities=18% Similarity=0.147 Sum_probs=35.2
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~ 41 (268)
.+|||||+|.++++|+.|| .|++..|.|+.|.|.++...
T Consensus 56 ~kG~afV~F~~~e~a~~a~-~~~~~~i~gR~i~V~~~~~~ 94 (104)
T d1wg5a_ 56 STGEAFVQFASQEIAEKAL-KKHKERIGHRYIEIFKSSRA 94 (104)
T ss_dssp BCSEEEEEESSHHHHHHHH-TTTTCCSSSSCCEEEEECTT
T ss_pred cceEEEEEeCCHHHHHHHH-hhCCCEEcceEEEEEECCHH
Confidence 4799999999999999888 59999999999999998753
No 73
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.06 E-value=1.7e-06 Score=62.08 Aligned_cols=37 Identities=27% Similarity=0.381 Sum_probs=33.5
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEecc
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 39 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~ 39 (268)
.+|||||+|.+.++|+.||. +++..|+|+.|.|..|.
T Consensus 47 ~kG~afV~f~~~~~a~~ai~-~~~~~i~Gr~i~V~~A~ 83 (84)
T d1l3ka1 47 SRGFGFVTYATVEEVDAAMN-ARPHKVDGRVVEPKRAV 83 (84)
T ss_dssp EEEEEEEEESSHHHHHHHHH-TCSCEETTEECEEEECC
T ss_pred cccEEEEEEcCHHHHHHHHH-hCCCEECCEEEEEEeee
Confidence 36999999999999999996 68999999999998874
No 74
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.05 E-value=1.6e-06 Score=62.29 Aligned_cols=36 Identities=17% Similarity=0.295 Sum_probs=33.3
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEecc
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 39 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~ 39 (268)
+|||||+|.+.++|+.|| .++|.+|.|+.|.|.+..
T Consensus 47 kG~afV~f~~~e~a~~al-~~~~~~~~g~~l~v~~~~ 82 (85)
T d1zh5a2 47 KGSIFVVFDSIESAKKFV-ETPGQKYKETDLLILFKD 82 (85)
T ss_dssp EEEEEEEESCHHHHHHHH-TCCCCEETTEECEEEEGG
T ss_pred ceEEEEEEcCHHHHHHHH-HHCCCEECCEEEEEEEcC
Confidence 589999999999999999 589999999999999864
No 75
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.01 E-value=4.2e-07 Score=65.89 Aligned_cols=37 Identities=22% Similarity=0.474 Sum_probs=33.5
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEecc
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 39 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~ 39 (268)
.+|||||+|.+.++|+.|| .|||++|+|+.|.|..++
T Consensus 47 ~kg~afV~f~~~e~a~~a~-~l~g~~~~Gr~l~V~r~k 83 (90)
T d1u2fa_ 47 DKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPH 83 (90)
T ss_dssp TTTEEEEEESSCTTTTTGG-GGSSCCSSSSCCCCBCTT
T ss_pred CceEEEEEeCCHHHHHHHH-hhCCcEECCEEEEECCCC
Confidence 4799999999999999998 599999999999997654
No 76
>d1nc8a_ g.40.1.1 (A:) HIV nucleocapsid {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=97.98 E-value=1.6e-06 Score=48.94 Aligned_cols=22 Identities=50% Similarity=1.025 Sum_probs=18.9
Q ss_pred CCCccccCCCCCCCCCcccCCC
Q 024424 59 GSGRCFNCGIDGHWARDCKAGD 80 (268)
Q Consensus 59 ~~~rC~~CG~~GH~ardC~~~~ 80 (268)
....|||||++||++++|.++.
T Consensus 5 ~~ikCfNCGkeGH~ar~CrAPR 26 (29)
T d1nc8a_ 5 KVIRCWNCGKEGHSARQCRAPR 26 (29)
T ss_dssp CCCBCTTTSCBSSCGGGCCSSS
T ss_pred ceeEeecCCccchhhhhccCcc
Confidence 3468999999999999999885
No 77
>d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=97.98 E-value=3.9e-06 Score=61.99 Aligned_cols=40 Identities=18% Similarity=0.130 Sum_probs=35.9
Q ss_pred CCCeEEEEeCCHHHHHHHHH--hhCCCeecCcceEEEeccCC
Q 024424 2 KRDFAFVEFSDPRDADDARY--SLNGRDVDGSRIIVEFARGG 41 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~--~ldG~~l~Gr~IrVe~a~~~ 41 (268)
.+|||||+|.+.++|..||+ ++++..|.|+.|.|.+++..
T Consensus 54 ~k~~afV~f~~~~~A~~Ai~~~~~~~~~~~gr~l~V~~s~~~ 95 (99)
T d1x4fa1 54 MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKY 95 (99)
T ss_dssp TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSC
T ss_pred cCCcEEEEecchHHHHHHHHHHhcCCceECCEEEEEEEcCCc
Confidence 36999999999999999998 58899999999999999643
No 78
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.93 E-value=5.2e-06 Score=59.66 Aligned_cols=39 Identities=13% Similarity=0.189 Sum_probs=34.7
Q ss_pred CCCeEEEEeCCHHHHHHHHHhh--CCCeecCcceEEEeccC
Q 024424 2 KRDFAFVEFSDPRDADDARYSL--NGRDVDGSRIIVEFARG 40 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~l--dG~~l~Gr~IrVe~a~~ 40 (268)
.+|||||+|.+.++|+.||..| ++..|.|+.|+|.|++.
T Consensus 43 ~~~~afV~f~~~e~A~~a~~~~~~~~~~~~g~~l~v~~sk~ 83 (88)
T d2cq1a1 43 GKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNH 83 (88)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSC
T ss_pred cceEEEEEeCCHHHHHHHHHHHccCCCccCCCEEEEEECCC
Confidence 3689999999999999999865 67899999999999863
No 79
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.91 E-value=3.1e-06 Score=61.55 Aligned_cols=37 Identities=16% Similarity=0.276 Sum_probs=32.7
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCC
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~ 41 (268)
+|||||+|.+.++|+.||..++ .|+|+.|.|.++...
T Consensus 50 rG~aFV~f~~~~~a~~al~~~~--~l~Gr~i~v~~a~~k 86 (90)
T d2cqga1 50 KGFGFVRFTEYETQVKVMSQRH--MIDGRWCDCKLPNSK 86 (90)
T ss_dssp EEEEEEEESSHHHHHHHHHSCE--EETTEEEEEECCCTT
T ss_pred CCEEEEEECCHHHHHHHHhcCC--ccCCEEeEEEeCCCC
Confidence 6899999999999999998654 899999999998753
No 80
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=97.90 E-value=6.8e-06 Score=59.47 Aligned_cols=39 Identities=26% Similarity=0.248 Sum_probs=35.1
Q ss_pred CCCeEEEEeCCHHHHHHHHHhh--CCCeecCcceEEEeccC
Q 024424 2 KRDFAFVEFSDPRDADDARYSL--NGRDVDGSRIIVEFARG 40 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~l--dG~~l~Gr~IrVe~a~~ 40 (268)
.++||||+|++.++|+.||+.| ++..|.|+.|.|.|++.
T Consensus 44 ~k~~afV~f~~~~~A~~A~~~l~~~~~~~~gr~l~V~~s~~ 84 (89)
T d1x4da1 44 KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQK 84 (89)
T ss_dssp SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECC
T ss_pred cceEEEEEEcchhhHHHHHHHHhhCCCccCCceEEEEECCC
Confidence 3689999999999999999965 78899999999999974
No 81
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.90 E-value=2.8e-06 Score=61.28 Aligned_cols=38 Identities=26% Similarity=0.277 Sum_probs=34.0
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccCC
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~~ 41 (268)
.+|||||+|++.++|+.||. ++.+|+|+.|.|.++...
T Consensus 41 ~~gfafV~f~~~~~a~~a~~--~~~~i~g~~l~v~~a~~k 78 (88)
T d1wf0a_ 41 FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAEPK 78 (88)
T ss_dssp CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCCCC
T ss_pred cCceEEEEECCHHHHHHHHh--CCCEECCEEeEEEeCCCC
Confidence 47999999999999999984 788999999999999754
No 82
>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.88 E-value=2.8e-06 Score=64.07 Aligned_cols=36 Identities=22% Similarity=0.167 Sum_probs=33.0
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEecc
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 39 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~ 39 (268)
+|||||+|.+.++|+.|| .|||..|+|+.|.|..+.
T Consensus 60 ~G~afVeF~~~e~a~~al-~~~~~~i~gR~i~V~~~~ 95 (112)
T d1wela1 60 TGEGFVEFRNEADYKAAL-CRHKQYMGNRFIQVHPIT 95 (112)
T ss_dssp EEEEEEEBSSSHHHHHHH-TSCSBCSTTSCBEEEEEC
T ss_pred eeEEEEEECCHHHHHHHH-HcCCCcCCCEEEEEEEcC
Confidence 589999999999999888 599999999999998764
No 83
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein L-like {Mouse (Mus musculus) [TaxId: 10090]}
Probab=97.87 E-value=7.2e-06 Score=60.85 Aligned_cols=39 Identities=15% Similarity=0.200 Sum_probs=34.7
Q ss_pred CCCeEEEEeCCHHHHHHHHHhh--CCCeecCcceEEEeccC
Q 024424 2 KRDFAFVEFSDPRDADDARYSL--NGRDVDGSRIIVEFARG 40 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~l--dG~~l~Gr~IrVe~a~~ 40 (268)
.+|||||+|++.++|+.||..| ++..|.|+.|.|.|+..
T Consensus 50 ~k~~AfV~f~~~e~A~~ai~~~~~~~~~~~g~~l~v~~s~~ 90 (104)
T d1wexa_ 50 FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTS 90 (104)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSS
T ss_pred cceeEEEEeCCHHHHHHHHHHHcCCCcEEeeEEEEEEEcCC
Confidence 4789999999999999999987 56778999999999864
No 84
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.79 E-value=4.7e-06 Score=58.52 Aligned_cols=36 Identities=19% Similarity=0.320 Sum_probs=31.5
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEec
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 38 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a 38 (268)
.+|||||+|.+.++|+.||+ +++.+|+|+.|.|..|
T Consensus 40 ~rG~~FV~f~~~~~a~~al~-~~~~~i~g~~i~vk~A 75 (75)
T d1x0fa1 40 RRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp TTCCEEEEESSSHHHHHHTT-CSSCCBTTBCCEEECC
T ss_pred cccEEEEEECCHHHHHHHHh-hCCCEECCEEeEEEEC
Confidence 47999999999999999996 4778899999988764
No 85
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=97.67 E-value=2.1e-05 Score=56.08 Aligned_cols=35 Identities=23% Similarity=0.230 Sum_probs=30.3
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcc-eEEEec
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSR-IIVEFA 38 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~-IrVe~a 38 (268)
+|||||+|.+.++|++|| .|||..|+|+. |.|..+
T Consensus 39 ~~~~fV~f~~~~~A~~Al-~~nG~~~~g~~~vgV~~~ 74 (81)
T d1wwha1 39 GNWMHIRYQSKLQARKAL-SKDGRIFGESIMIGVKPC 74 (81)
T ss_dssp SSEEEEEESSHHHHHHHH-TTTTCEETTTEECEEEEC
T ss_pred CCEEEEEEcccHHHHHHH-hcCCCeECCcEEEEEEeC
Confidence 699999999999999999 59999999975 456554
No 86
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8, ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.58 E-value=3.3e-05 Score=57.10 Aligned_cols=27 Identities=22% Similarity=0.619 Sum_probs=25.4
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCee
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDV 28 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l 28 (268)
.++||||+|.+.++|+.||..|+|.+|
T Consensus 55 ~k~~aFV~f~~~e~A~~A~~~lng~~i 81 (101)
T d2cq2a1 55 NKPYSFARYRTTEESKRAYVTLNGKEV 81 (101)
T ss_dssp TCSCEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CccEEEEEECCHHHHHHHHHHhCCCCC
Confidence 368999999999999999999999987
No 87
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.24 E-value=0.00011 Score=55.19 Aligned_cols=37 Identities=11% Similarity=0.101 Sum_probs=32.0
Q ss_pred CCeEEEEeCCH-HHHHHHHHhhCCCeecCcceEEEecc
Q 024424 3 RDFAFVEFSDP-RDADDARYSLNGRDVDGSRIIVEFAR 39 (268)
Q Consensus 3 rGfgFVeF~~~-~dA~~Ai~~ldG~~l~Gr~IrVe~a~ 39 (268)
+|||||.|.+. ++|..||..|++..|.+..+.|.++.
T Consensus 47 kg~gfV~F~~~~~~A~~a~~~~~~~~l~~~~~~v~~~~ 84 (113)
T d1owxa_ 47 AKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEV 84 (113)
T ss_dssp CSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEE
T ss_pred CceEEEEecCcHHHHHHHHHHhcCCceecCceEEEEee
Confidence 68999999985 78999999999999988877777654
No 88
>d1nc8a_ g.40.1.1 (A:) HIV nucleocapsid {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=96.79 E-value=0.00028 Score=39.57 Aligned_cols=21 Identities=33% Similarity=0.987 Sum_probs=18.2
Q ss_pred CCccccCCCCCccccccCCCC
Q 024424 82 KNKCYRCGERGHIERNCQNSP 102 (268)
Q Consensus 82 ~~~cyrcg~~GH~~r~c~~s~ 102 (268)
.-.||+||++||++++|....
T Consensus 6 ~ikCfNCGkeGH~ar~CrAPR 26 (29)
T d1nc8a_ 6 VIRCWNCGKEGHSARQCRAPR 26 (29)
T ss_dssp CCBCTTTSCBSSCGGGCCSSS
T ss_pred eeEeecCCccchhhhhccCcc
Confidence 468999999999999998643
No 89
>d1dsqa_ g.40.1.1 (A:) Nucleic acid binding protein p14 {Mouse mammary tumor virus [TaxId: 11757]}
Probab=96.58 E-value=0.0004 Score=37.35 Aligned_cols=18 Identities=56% Similarity=1.241 Sum_probs=14.3
Q ss_pred ccccCCCCCCCCCcccCC
Q 024424 62 RCFNCGIDGHWARDCKAG 79 (268)
Q Consensus 62 rC~~CG~~GH~ardC~~~ 79 (268)
.||.||+.||+..||+..
T Consensus 4 vcfscgktghikkdck~e 21 (26)
T d1dsqa_ 4 VCFSCGKTGHIKRDCKEE 21 (26)
T ss_dssp BCTTTCCBSSCTTTTTCC
T ss_pred EEEecCCcccchhhhhhh
Confidence 688888888888888754
No 90
>d1dsqa_ g.40.1.1 (A:) Nucleic acid binding protein p14 {Mouse mammary tumor virus [TaxId: 11757]}
Probab=96.03 E-value=0.0012 Score=35.42 Aligned_cols=19 Identities=42% Similarity=1.256 Sum_probs=17.1
Q ss_pred CccccCCCCCccccccCCC
Q 024424 83 NKCYRCGERGHIERNCQNS 101 (268)
Q Consensus 83 ~~cyrcg~~GH~~r~c~~s 101 (268)
-.||.||+.|||.++|.+.
T Consensus 3 pvcfscgktghikkdck~e 21 (26)
T d1dsqa_ 3 PVCFSCGKTGHIKRDCKEE 21 (26)
T ss_dssp CBCTTTCCBSSCTTTTTCC
T ss_pred CEEEecCCcccchhhhhhh
Confidence 4799999999999999874
No 91
>d2exfa1 g.40.1.1 (A:12-53) HIV nucleocapsid {Human immunodeficiency virus type 1, different isolates [TaxId: 11676]}
Probab=95.49 E-value=0.0039 Score=38.46 Aligned_cols=18 Identities=39% Similarity=1.123 Sum_probs=16.6
Q ss_pred CccccCCCCCCCCCcccC
Q 024424 61 GRCFNCGIDGHWARDCKA 78 (268)
Q Consensus 61 ~rC~~CG~~GH~ardC~~ 78 (268)
..||.||..|||+.+|+.
T Consensus 23 ~~C~~Cg~~GH~~~~Cp~ 40 (42)
T d2exfa1 23 KGCWKCGKEGHQMKDCTE 40 (42)
T ss_dssp SSCSSSCCSSSCTTTCCS
T ss_pred CccccCCCCCeecccCCC
Confidence 579999999999999985
No 92
>d1a6bb_ g.40.1.1 (B:) Zinc finger protein ncp10 {Moloney murine leukemia virus, MoMLV [TaxId: 11801]}
Probab=94.20 E-value=0.02 Score=34.13 Aligned_cols=20 Identities=40% Similarity=1.076 Sum_probs=11.5
Q ss_pred CCCccccCCCCCCCCCcccC
Q 024424 59 GSGRCFNCGIDGHWARDCKA 78 (268)
Q Consensus 59 ~~~rC~~CG~~GH~ardC~~ 78 (268)
....|.-|-..|||+.||+.
T Consensus 9 ~kDQCAyCke~GHW~~dCPk 28 (40)
T d1a6bb_ 9 DRDQCAYCKEKGHWAKDCPK 28 (40)
T ss_dssp CSSSCSSSCCTTCCTTSCSS
T ss_pred cchhhHHHhhcCchhhhCcc
Confidence 34456666666666666653
No 93
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=92.73 E-value=0.047 Score=42.39 Aligned_cols=36 Identities=28% Similarity=0.411 Sum_probs=29.0
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEecc
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 39 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~ 39 (268)
+|||||+|.+.++|+.|+.. .+..|.+..|.+....
T Consensus 48 ~g~afv~f~~~~~a~~a~~~-~~~~~~~~~~~~~~~~ 83 (183)
T d1u1qa_ 48 RGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAV 83 (183)
T ss_dssp EEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEECC
T ss_pred cCceecccCCHHHHHHHHHh-cCCcccccchhhhhhh
Confidence 58999999999999999864 5666777777776654
No 94
>d1a6bb_ g.40.1.1 (B:) Zinc finger protein ncp10 {Moloney murine leukemia virus, MoMLV [TaxId: 11801]}
Probab=91.60 E-value=0.074 Score=31.59 Aligned_cols=24 Identities=29% Similarity=0.908 Sum_probs=20.5
Q ss_pred CCccccCCCCCccccccCCCCCCC
Q 024424 82 KNKCYRCGERGHIERNCQNSPKKL 105 (268)
Q Consensus 82 ~~~cyrcg~~GH~~r~c~~s~~~~ 105 (268)
++-|-.|.+.|||.++|+..+...
T Consensus 10 kDQCAyCke~GHW~~dCPkkprg~ 33 (40)
T d1a6bb_ 10 RDQCAYCKEKGHWAKDCPKKPRGP 33 (40)
T ss_dssp SSSCSSSCCTTCCTTSCSSSCCCT
T ss_pred chhhHHHhhcCchhhhCccCCCCC
Confidence 578999999999999999866543
No 95
>d2dgxa1 d.58.7.1 (A:563-635) Limkain-b1, LKAP {Human (Homo sapiens) [TaxId: 9606]}
Probab=88.89 E-value=0.28 Score=33.18 Aligned_cols=36 Identities=31% Similarity=0.396 Sum_probs=33.6
Q ss_pred eEEEEeCCHHHHHHHHHhhCCCeecCcceEEEeccC
Q 024424 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 40 (268)
Q Consensus 5 fgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a~~ 40 (268)
.|.|...+..||..||..|+-..|.+++|.|.++.+
T Consensus 37 ~A~V~v~~~q~A~~~v~~LhR~KiG~KRI~Vs~~~~ 72 (73)
T d2dgxa1 37 KAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLATG 72 (73)
T ss_dssp CEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred EEEEEcCCHHHHHHHHHHHHHHhcCCeEEEEEEecC
Confidence 588999999999999999999999999999999864
No 96
>d1cl4a_ g.40.1.1 (A:) Nucleocapsid protein from mason-pfizer monkey virus (MPMV) {Mason-pfizer monkey virus [TaxId: 11855]}
Probab=85.79 E-value=0.31 Score=27.62 Aligned_cols=19 Identities=42% Similarity=1.046 Sum_probs=15.4
Q ss_pred CccccCCCCCCCCCcccCC
Q 024424 61 GRCFNCGIDGHWARDCKAG 79 (268)
Q Consensus 61 ~rC~~CG~~GH~ardC~~~ 79 (268)
+.|-+|.+.-||+.+|..-
T Consensus 3 ~lCPrC~kG~HWa~~Crsk 21 (32)
T d1cl4a_ 3 GLCPRCKRGKHWANECKSK 21 (32)
T ss_dssp CSCSSCSSCSSCSTTCCCT
T ss_pred ccCccccCcchHHHHhhhh
Confidence 5688898888999888754
No 97
>d1dsva_ g.40.1.1 (A:) Nucleic acid binding protein p14 {Mouse mammary tumor virus [TaxId: 11757]}
Probab=85.48 E-value=0.18 Score=28.49 Aligned_cols=19 Identities=37% Similarity=0.943 Sum_probs=15.9
Q ss_pred CccccCCCCCCCCCcccCC
Q 024424 61 GRCFNCGIDGHWARDCKAG 79 (268)
Q Consensus 61 ~rC~~CG~~GH~ardC~~~ 79 (268)
..|-+|.+.-||+.+|..-
T Consensus 3 ~lCPrC~kG~HWa~~Crsk 21 (31)
T d1dsva_ 3 GLCPRCKKGYHWKSECKSK 21 (31)
T ss_dssp CBCTTTCSSBSCTTTCCCS
T ss_pred ccCccccCcchHHHHhhhh
Confidence 5789999999999999753
No 98
>d1ufwa_ d.58.7.1 (A:) Synaptojanin 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=84.02 E-value=0.31 Score=34.58 Aligned_cols=33 Identities=21% Similarity=0.326 Sum_probs=28.5
Q ss_pred eEEEEeCCHHHHHHHHHhhCCCeecCcceEEEec
Q 024424 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 38 (268)
Q Consensus 5 fgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a 38 (268)
--.|+|.+-+.|..|+ .|+|++|+|+.|.|...
T Consensus 60 ~mwVTF~dG~SAL~al-~l~g~~v~G~~l~It~~ 92 (95)
T d1ufwa_ 60 QMLVTFADSHSALSVL-DVDGMKVKGRAVKISGP 92 (95)
T ss_dssp EEEEECSCSHHHHHHH-HGGGSEETTEEEEEECC
T ss_pred eEEEEECCcHHHHHHh-ccCCeEEcceEEEEecC
Confidence 4579999999999998 69999999999988643
No 99
>d1hc7a3 d.68.5.1 (A:404-477) C-terminal domain of ProRS {Thermus thermophilus [TaxId: 274]}
Probab=68.47 E-value=0.94 Score=30.54 Aligned_cols=27 Identities=7% Similarity=0.086 Sum_probs=20.7
Q ss_pred CCCCeEEEEeCCHHHHHHHHHhhCCCe
Q 024424 1 MKRDFAFVEFSDPRDADDARYSLNGRD 27 (268)
Q Consensus 1 lkrGfgFVeF~~~~dA~~Ai~~ldG~~ 27 (268)
|.+||+.+-|-...+.+++|+..-+..
T Consensus 14 l~~Gfv~~~wcg~~ecE~~IKeet~at 40 (74)
T d1hc7a3 14 VQEGFALAFHCGDKACERLIQEETTAT 40 (74)
T ss_dssp TTTSEEEECCCCCHHHHHHHHHHHCCE
T ss_pred HHCCEEEEEecCCHHHHHHHHHHhCcE
Confidence 467898888988889999997654433
No 100
>d1cl4a_ g.40.1.1 (A:) Nucleocapsid protein from mason-pfizer monkey virus (MPMV) {Mason-pfizer monkey virus [TaxId: 11855]}
Probab=58.96 E-value=2.6 Score=23.59 Aligned_cols=20 Identities=25% Similarity=0.649 Sum_probs=17.5
Q ss_pred CCccccCCCCCccccccCCC
Q 024424 82 KNKCYRCGERGHIERNCQNS 101 (268)
Q Consensus 82 ~~~cyrcg~~GH~~r~c~~s 101 (268)
...|-+|.+.-||+.+|...
T Consensus 2 P~lCPrC~kG~HWa~~Crsk 21 (32)
T d1cl4a_ 2 PGLCPRCKRGKHWANECKSK 21 (32)
T ss_dssp CCSCSSCSSCSSCSTTCCCT
T ss_pred CccCccccCcchHHHHhhhh
Confidence 45799999999999999864
No 101
>d1uw4a_ d.58.7.4 (A:) RNA processing protein UPF3x, RRM domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=53.10 E-value=7.9 Score=26.74 Aligned_cols=35 Identities=29% Similarity=0.328 Sum_probs=27.9
Q ss_pred eEEEEeCCHHHHHHHHHhhCCCeecCc-----ceEEEecc
Q 024424 5 FAFVEFSDPRDADDARYSLNGRDVDGS-----RIIVEFAR 39 (268)
Q Consensus 5 fgFVeF~~~~dA~~Ai~~ldG~~l~Gr-----~IrVe~a~ 39 (268)
-|+|.|.+.+++..-.+.++|..|... .-.||+|-
T Consensus 47 RAYi~F~~~~~v~~F~~~f~g~~F~D~~g~~~~a~VE~AP 86 (91)
T d1uw4a_ 47 RAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAIVEFAP 86 (91)
T ss_dssp EEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECEEEECS
T ss_pred EEEEEeCCHHHHHHHHHHcCCcEEEcCCCCEeeeEEEEcC
Confidence 489999999999999999999988543 23566663
No 102
>d2ix0a2 b.40.4.5 (A:4-82) Exoribonuclease 2, RNB {Escherichia coli [TaxId: 562]}
Probab=41.90 E-value=2.1 Score=29.03 Aligned_cols=36 Identities=19% Similarity=0.342 Sum_probs=19.3
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhCCCeecCcceEEEec
Q 024424 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 38 (268)
Q Consensus 2 krGfgFVeF~~~~dA~~Ai~~ldG~~l~Gr~IrVe~a 38 (268)
++|||||..++.+|..-.-..|+ .-|.|-.|.|.+.
T Consensus 27 ~~G~GFv~~d~~~DifI~~~~~~-~A~~GD~V~v~i~ 62 (79)
T d2ix0a2 27 EKGFGFLEVDAQKSYFIPPPQMK-KVMHGDRIIAVIH 62 (79)
T ss_dssp C--CEEEEEETTEEEEECHHHHT-TCCTTCEEEEEEE
T ss_pred CCCcEEEEECCCCcEEECHHHHc-CCCCCCEEEEEEE
Confidence 57999999987655332333343 3344555556554
No 103
>d1nj1a2 d.68.5.1 (A:411-481) C-terminal domain of ProRS {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]}
Probab=41.36 E-value=14 Score=24.01 Aligned_cols=27 Identities=7% Similarity=-0.047 Sum_probs=20.2
Q ss_pred CCeEEEEeCCHHHHHHHHHhhCCCeec
Q 024424 3 RDFAFVEFSDPRDADDARYSLNGRDVD 29 (268)
Q Consensus 3 rGfgFVeF~~~~dA~~Ai~~ldG~~l~ 29 (268)
+||+.+-|-...+.+..|+..-+..+.
T Consensus 18 ~G~v~~~wcg~~ece~~ike~t~at~r 44 (71)
T d1nj1a2 18 RGIISFMWCGEEECGMDVEEKVRVDIL 44 (71)
T ss_dssp CSEEEEEECCCHHHHHHHHHHHTCEEE
T ss_pred CCEEEEEecCCHHHHHHHHHHhCCeEe
Confidence 579999998888888898765444433
No 104
>d1wfqa_ b.40.4.5 (A:) Cold shock domain protein E1 (UNR) {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.22 E-value=10 Score=25.88 Aligned_cols=14 Identities=14% Similarity=0.551 Sum_probs=11.2
Q ss_pred CCCCeEEEEeCCHH
Q 024424 1 MKRDFAFVEFSDPR 14 (268)
Q Consensus 1 lkrGfgFVeF~~~~ 14 (268)
|++|||||+..+..
T Consensus 26 ~~~gfGFI~~~~~~ 39 (89)
T d1wfqa_ 26 LLTSYGFIQCSERQ 39 (89)
T ss_dssp ECSSEEEEEETTTT
T ss_pred ecCccceEEeCCCC
Confidence 57899999987653
No 105
>d1c9oa_ b.40.4.5 (A:) Major cold shock protein {Bacillus caldolyticus [TaxId: 1394]}
Probab=26.48 E-value=8.6 Score=24.65 Aligned_cols=14 Identities=21% Similarity=0.634 Sum_probs=10.8
Q ss_pred CCCeEEEEeCCHHH
Q 024424 2 KRDFAFVEFSDPRD 15 (268)
Q Consensus 2 krGfgFVeF~~~~d 15 (268)
.+|||||+.++.+|
T Consensus 12 ~kGfGFI~~d~g~D 25 (66)
T d1c9oa_ 12 EKGYGFIEVEGGSD 25 (66)
T ss_dssp TTTEEEEEETTEEE
T ss_pred CCCEEEEEecCCce
Confidence 58999999876544
No 106
>d1g6pa_ b.40.4.5 (A:) Major cold shock protein {Thermotoga maritima [TaxId: 2336]}
Probab=25.60 E-value=9.7 Score=24.40 Aligned_cols=14 Identities=21% Similarity=0.563 Sum_probs=10.7
Q ss_pred CCCeEEEEeCCHHH
Q 024424 2 KRDFAFVEFSDPRD 15 (268)
Q Consensus 2 krGfgFVeF~~~~d 15 (268)
.+|||||+.++-+|
T Consensus 11 ~kGfGFI~~~~g~d 24 (66)
T d1g6pa_ 11 KKGYGFITKDEGGD 24 (66)
T ss_dssp TTTEEEEEETTSCB
T ss_pred CCCeeEEEecCCce
Confidence 58999999876543
No 107
>d1mjca_ b.40.4.5 (A:) Major cold shock protein {Escherichia coli [TaxId: 562]}
Probab=24.42 E-value=17 Score=23.29 Aligned_cols=12 Identities=25% Similarity=0.573 Sum_probs=9.9
Q ss_pred CCCeEEEEeCCH
Q 024424 2 KRDFAFVEFSDP 13 (268)
Q Consensus 2 krGfgFVeF~~~ 13 (268)
.+|||||+.++.
T Consensus 14 ~kGfGFI~~d~g 25 (69)
T d1mjca_ 14 DKGFGFITPDDG 25 (69)
T ss_dssp TTTEEEEEETTS
T ss_pred CCCEEEEEEcCC
Confidence 589999998764
No 108
>d1h95a_ b.40.4.5 (A:) Y-box protein 1 cold shock domain (YB1-CSD) {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.65 E-value=16 Score=24.20 Aligned_cols=12 Identities=17% Similarity=0.617 Sum_probs=9.5
Q ss_pred CCCeEEEEeCCH
Q 024424 2 KRDFAFVEFSDP 13 (268)
Q Consensus 2 krGfgFVeF~~~ 13 (268)
.+|||||+..+.
T Consensus 19 ~KGfGFI~~ddg 30 (79)
T d1h95a_ 19 RNGYGFINRNDT 30 (79)
T ss_dssp TTTEEEEEEGGG
T ss_pred CCCeEEEEECCC
Confidence 589999997654
Done!