Query 024426
Match_columns 268
No_of_seqs 153 out of 1403
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 04:30:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024426.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024426hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0811 SNARE protein PEP12/VA 100.0 2.1E-42 4.6E-47 297.0 28.9 260 1-267 1-264 (269)
2 KOG0810 SNARE protein Syntaxin 100.0 1.7E-42 3.8E-47 302.6 22.5 240 18-267 38-290 (297)
3 KOG0809 SNARE protein TLG2/Syn 100.0 8.7E-36 1.9E-40 253.3 26.4 241 16-266 56-301 (305)
4 COG5325 t-SNARE complex subuni 100.0 4.6E-29 1E-33 210.7 23.0 233 18-266 36-278 (283)
5 COG5074 t-SNARE complex subuni 100.0 4.6E-29 1E-33 205.1 18.7 236 18-264 23-267 (280)
6 KOG0812 SNARE protein SED5/Syn 99.8 1.3E-18 2.7E-23 147.9 25.1 241 18-268 43-309 (311)
7 PF05739 SNARE: SNARE domain; 99.6 4.8E-15 1E-19 101.5 10.3 63 180-242 1-63 (63)
8 cd00179 SynN Syntaxin N-termin 99.6 7.1E-15 1.5E-19 118.1 9.4 128 18-146 4-143 (151)
9 PF14523 Syntaxin_2: Syntaxin- 99.6 8.9E-14 1.9E-18 104.4 13.2 101 25-125 1-101 (102)
10 smart00503 SynN Syntaxin N-ter 99.5 1.5E-13 3.2E-18 105.5 12.2 106 18-123 6-117 (117)
11 cd00193 t_SNARE Soluble NSF (N 99.5 2.3E-13 5E-18 91.8 8.3 59 179-237 2-60 (60)
12 smart00397 t_SNARE Helical reg 99.4 3.9E-12 8.4E-17 87.4 9.3 62 176-237 5-66 (66)
13 KOG3202 SNARE protein TLG1/Syn 99.4 1.3E-09 2.8E-14 92.6 24.8 225 17-266 7-234 (235)
14 PF00804 Syntaxin: Syntaxin; 99.0 3.8E-09 8.3E-14 78.8 10.5 91 18-108 5-103 (103)
15 KOG3894 SNARE protein Syntaxin 98.6 1.6E-06 3.5E-11 75.7 13.0 85 178-262 227-311 (316)
16 KOG3385 V-SNARE [Intracellular 98.5 1.7E-06 3.7E-11 64.6 9.3 85 179-265 32-116 (118)
17 PF00957 Synaptobrevin: Synapt 97.9 0.00042 9.1E-09 50.4 12.5 82 183-265 3-84 (89)
18 KOG0860 Synaptobrevin/VAMP-lik 97.7 0.0018 3.9E-08 48.9 12.2 40 184-223 30-69 (116)
19 PF09753 Use1: Membrane fusion 97.4 0.0078 1.7E-07 52.4 14.3 57 178-237 165-221 (251)
20 COG5074 t-SNARE complex subuni 97.1 0.008 1.7E-07 50.7 10.5 82 178-261 187-268 (280)
21 KOG0811 SNARE protein PEP12/VA 97.0 0.21 4.5E-06 43.8 19.4 86 176-264 180-265 (269)
22 COG5325 t-SNARE complex subuni 96.4 0.58 1.3E-05 40.7 18.6 73 177-253 196-268 (283)
23 KOG0810 SNARE protein Syntaxin 96.1 0.16 3.4E-06 45.3 12.8 91 178-268 194-288 (297)
24 KOG1666 V-SNARE [Intracellular 95.8 0.95 2.1E-05 38.0 22.1 59 184-242 136-194 (220)
25 KOG3065 SNAP-25 (synaptosome-a 95.8 0.055 1.2E-06 47.4 8.3 57 180-236 215-271 (273)
26 PF00957 Synaptobrevin: Synapt 95.2 0.8 1.7E-05 33.0 11.9 15 178-192 26-40 (89)
27 PF09889 DUF2116: Uncharacteri 94.1 0.11 2.3E-06 34.7 4.2 31 238-268 29-59 (59)
28 PF15605 Toxin_52: Putative to 93.1 1.2 2.6E-05 32.8 8.6 70 5-77 32-101 (103)
29 KOG0809 SNARE protein TLG2/Syn 91.6 9.1 0.0002 33.8 15.3 90 178-267 206-299 (305)
30 KOG0860 Synaptobrevin/VAMP-lik 90.4 1.7 3.8E-05 32.9 7.2 18 178-195 52-69 (116)
31 PF09753 Use1: Membrane fusion 89.6 6.9 0.00015 33.9 11.5 72 181-255 160-236 (251)
32 PF03908 Sec20: Sec20; InterP 88.9 7.1 0.00015 28.2 12.1 43 207-249 32-74 (92)
33 PF11166 DUF2951: Protein of u 88.8 7.3 0.00016 28.3 11.9 81 181-266 9-92 (98)
34 KOG2678 Predicted membrane pro 88.8 14 0.0003 31.4 13.6 51 183-236 158-208 (244)
35 PF10717 ODV-E18: Occlusion-de 87.9 0.56 1.2E-05 33.2 2.8 18 251-268 27-44 (85)
36 PHA02844 putative transmembran 87.6 0.8 1.7E-05 31.6 3.3 24 244-267 45-68 (75)
37 PF05478 Prominin: Prominin; 87.3 37 0.00081 34.7 21.3 55 184-240 358-412 (806)
38 PHA02650 hypothetical protein; 87.3 0.78 1.7E-05 32.1 3.1 25 243-267 45-69 (81)
39 PHA02975 hypothetical protein; 86.1 0.92 2E-05 30.8 2.9 25 243-267 40-64 (69)
40 PHA03054 IMV membrane protein; 85.7 1.1 2.4E-05 30.6 3.2 24 244-267 45-68 (72)
41 KOG3251 Golgi SNAP receptor co 85.4 21 0.00046 30.1 21.5 53 206-258 152-204 (213)
42 PHA02819 hypothetical protein; 85.3 1.2 2.6E-05 30.5 3.1 22 245-266 44-65 (71)
43 PF06072 Herpes_US9: Alphaherp 82.4 3.8 8.2E-05 27.1 4.5 25 228-252 9-35 (60)
44 PF10779 XhlA: Haemolysin XhlA 82.2 14 0.0003 25.4 9.9 42 209-254 18-59 (71)
45 PF12352 V-SNARE_C: Snare regi 82.1 12 0.00027 24.9 9.3 57 184-240 9-65 (66)
46 KOG3208 SNARE protein GS28 [In 81.5 32 0.00069 29.2 22.1 34 204-237 170-203 (231)
47 PF00523 Fusion_gly: Fusion gl 80.9 2.6 5.5E-05 40.3 4.7 29 216-244 436-464 (490)
48 PF09177 Syntaxin-6_N: Syntaxi 78.5 9.9 0.00022 27.8 6.3 59 17-82 2-60 (97)
49 PF04505 Dispanin: Interferon- 77.4 1.5 3.2E-05 31.3 1.5 32 224-255 43-74 (82)
50 PHA02692 hypothetical protein; 77.4 3.2 7E-05 28.4 3.1 13 254-266 53-65 (70)
51 KOG0859 Synaptobrevin/VAMP-lik 76.8 6.2 0.00014 32.8 5.2 43 184-229 126-168 (217)
52 PF09548 Spore_III_AB: Stage I 76.1 9.5 0.00021 31.0 6.2 33 231-263 137-169 (170)
53 PF06143 Baculo_11_kDa: Baculo 75.7 3.7 8E-05 29.3 3.1 8 232-239 20-27 (84)
54 PRK08307 stage III sporulation 75.0 11 0.00023 30.8 6.2 33 231-263 138-170 (171)
55 TIGR02833 spore_III_AB stage I 74.8 11 0.00024 30.7 6.2 33 231-263 137-169 (170)
56 PF12575 DUF3753: Protein of u 74.7 5 0.00011 27.8 3.5 8 258-265 59-66 (72)
57 PF09889 DUF2116: Uncharacteri 74.7 6.3 0.00014 26.2 3.9 32 231-262 25-56 (59)
58 PHA02819 hypothetical protein; 74.6 3.2 6.9E-05 28.4 2.5 29 240-268 36-64 (71)
59 PF12575 DUF3753: Protein of u 74.4 3.1 6.8E-05 28.7 2.4 17 252-268 50-66 (72)
60 KOG3202 SNARE protein TLG1/Syn 74.3 22 0.00048 30.6 8.1 19 250-268 215-233 (235)
61 KOG3065 SNAP-25 (synaptosome-a 74.1 51 0.0011 29.1 10.5 48 192-239 88-135 (273)
62 PF14992 TMCO5: TMCO5 family 73.6 64 0.0014 28.5 13.1 49 178-226 125-173 (280)
63 PHA02844 putative transmembran 73.1 3.6 7.9E-05 28.5 2.5 29 240-268 38-66 (75)
64 cd00193 t_SNARE Soluble NSF (N 71.7 23 0.0005 22.5 8.3 56 187-242 3-58 (60)
65 PHA02650 hypothetical protein; 68.0 5.2 0.00011 28.0 2.4 26 243-268 42-67 (81)
66 PF04102 SlyX: SlyX; InterPro 67.3 37 0.0008 23.1 7.0 48 184-231 5-52 (69)
67 PHA03054 IMV membrane protein; 66.3 6.7 0.00015 26.9 2.6 26 243-268 41-66 (72)
68 PF14812 PBP1_TM: Transmembran 65.7 0.32 6.9E-06 34.5 -4.0 15 241-255 61-75 (81)
69 PF06143 Baculo_11_kDa: Baculo 65.0 8.2 0.00018 27.6 3.0 15 249-263 41-55 (84)
70 PF10805 DUF2730: Protein of u 64.9 39 0.00084 25.2 6.9 42 21-62 36-77 (106)
71 KOG2678 Predicted membrane pro 64.7 89 0.0019 26.6 10.1 53 187-242 155-207 (244)
72 PF06072 Herpes_US9: Alphaherp 63.8 18 0.00039 24.0 4.2 21 239-259 25-45 (60)
73 PF05531 NPV_P10: Nucleopolyhe 63.2 49 0.0011 23.1 7.5 52 21-72 5-57 (75)
74 PF01601 Corona_S2: Coronaviru 62.4 2.9 6.4E-05 40.4 0.5 27 18-44 257-283 (610)
75 PHA03240 envelope glycoprotein 62.3 8.3 0.00018 32.5 3.0 14 244-257 210-223 (258)
76 PF09125 COX2-transmemb: Cytoc 61.2 15 0.00032 21.8 3.0 13 249-261 16-28 (38)
77 PF01519 DUF16: Protein of unk 60.8 66 0.0014 23.9 7.8 49 180-228 50-98 (102)
78 KOG2150 CCR4-NOT transcription 60.4 1.5E+02 0.0032 28.9 11.2 92 20-120 5-99 (575)
79 PF00523 Fusion_gly: Fusion gl 60.2 7.9 0.00017 37.0 2.9 28 212-239 439-466 (490)
80 PF03904 DUF334: Domain of unk 59.9 1.1E+02 0.0024 26.1 15.1 74 178-253 66-155 (230)
81 PF03310 Cauli_DNA-bind: Cauli 59.4 75 0.0016 24.4 7.5 61 22-82 5-69 (121)
82 PF06789 UPF0258: Uncharacteri 59.4 4.9 0.00011 31.9 1.2 13 230-242 115-127 (159)
83 PF11598 COMP: Cartilage oligo 58.8 26 0.00056 21.9 4.1 24 187-210 5-28 (45)
84 PF15106 TMEM156: TMEM156 prot 58.7 11 0.00024 31.7 3.1 24 241-264 170-193 (226)
85 PF11239 DUF3040: Protein of u 58.6 20 0.00043 25.3 4.1 21 212-232 10-30 (82)
86 PF02346 Vac_Fusion: Chordopox 58.6 51 0.0011 21.8 6.5 45 184-228 2-46 (57)
87 PRK00295 hypothetical protein; 57.3 59 0.0013 22.1 7.8 45 185-229 7-51 (68)
88 COG1256 FlgK Flagellar hook-as 56.1 42 0.00091 32.7 7.1 26 57-82 163-188 (552)
89 PF10717 ODV-E18: Occlusion-de 55.9 15 0.00032 26.2 2.9 16 248-263 28-43 (85)
90 PRK13673 hypothetical protein; 55.6 31 0.00066 26.4 4.9 36 229-264 74-109 (118)
91 TIGR01294 P_lamban phospholamb 54.5 18 0.00039 22.5 2.8 7 252-258 39-45 (52)
92 TIGR02492 flgK_ends flagellar 54.5 49 0.0011 29.8 6.9 28 55-82 157-184 (322)
93 PF11837 DUF3357: Domain of un 54.5 4.1 9E-05 30.5 0.0 23 243-265 24-46 (106)
94 PF05957 DUF883: Bacterial pro 53.6 81 0.0018 22.6 11.6 39 192-230 11-50 (94)
95 TIGR01149 mtrG N5-methyltetrah 53.0 72 0.0016 21.9 6.6 13 213-225 21-33 (70)
96 PHA03395 p10 fibrous body prot 52.8 85 0.0018 22.6 6.9 51 21-71 5-56 (87)
97 PF00517 GP41: Retroviral enve 52.5 48 0.001 27.8 6.1 18 178-195 103-120 (204)
98 PF05739 SNARE: SNARE domain; 52.4 63 0.0014 21.0 8.7 50 182-231 10-59 (63)
99 PHA02692 hypothetical protein; 51.2 13 0.00028 25.5 2.0 20 249-268 45-64 (70)
100 PRK04325 hypothetical protein; 50.8 82 0.0018 21.8 7.8 45 185-229 11-55 (74)
101 PF04906 Tweety: Tweety; Inte 50.6 46 0.00099 31.1 6.2 12 188-199 123-134 (406)
102 PF05393 Hum_adeno_E3A: Human 50.2 20 0.00044 25.7 2.9 17 248-264 35-51 (94)
103 PRK07739 flgK flagellar hook-a 50.2 55 0.0012 31.5 6.9 54 55-108 169-222 (507)
104 PRK07191 flgK flagellar hook-a 50.0 56 0.0012 31.0 6.8 28 55-82 157-184 (456)
105 PRK02793 phi X174 lysis protei 49.8 84 0.0018 21.7 7.8 46 184-229 9-54 (72)
106 PF12325 TMF_TATA_bd: TATA ele 48.6 64 0.0014 24.7 5.7 28 175-202 88-115 (120)
107 COG3736 VirB8 Type IV secretor 48.5 44 0.00096 28.8 5.3 22 245-266 40-61 (239)
108 PRK00736 hypothetical protein; 48.2 86 0.0019 21.3 7.8 45 185-229 7-51 (68)
109 PF08173 YbgT_YccB: Membrane b 48.0 26 0.00057 19.6 2.5 18 248-265 1-18 (28)
110 PF07106 TBPIP: Tat binding pr 47.9 1.4E+02 0.0031 23.9 11.2 61 18-82 77-137 (169)
111 KOG1666 V-SNARE [Intracellular 47.7 56 0.0012 27.6 5.6 49 219-267 164-216 (220)
112 PF13198 DUF4014: Protein of u 47.3 26 0.00057 24.1 3.0 17 239-255 8-24 (72)
113 PRK07521 flgK flagellar hook-a 47.1 62 0.0013 30.9 6.7 54 55-108 152-205 (483)
114 PF01102 Glycophorin_A: Glycop 46.7 21 0.00045 27.5 2.8 16 250-265 70-85 (122)
115 COG3763 Uncharacterized protei 46.3 34 0.00073 23.6 3.4 14 249-262 6-19 (71)
116 PRK06665 flgK flagellar hook-a 45.6 73 0.0016 31.6 7.1 28 55-82 169-196 (627)
117 TIGR02106 cyd_oper_ybgT cyd op 44.7 31 0.00067 19.6 2.5 17 248-264 1-17 (30)
118 PF03729 DUF308: Short repeat 44.6 71 0.0015 21.0 5.1 40 227-268 33-72 (72)
119 PRK15041 methyl-accepting chem 44.3 3.1E+02 0.0066 26.6 11.8 54 176-229 433-486 (554)
120 PRK05683 flgK flagellar hook-a 44.1 77 0.0017 31.8 7.0 54 55-108 157-210 (676)
121 PRK14762 membrane protein; Pro 44.1 45 0.00098 18.0 3.0 11 249-259 6-16 (27)
122 COG4640 Predicted membrane pro 43.9 23 0.0005 32.7 3.0 24 229-252 31-55 (465)
123 PF07432 Hc1: Histone H1-like 43.0 1.2E+02 0.0027 23.0 6.3 53 60-118 3-55 (123)
124 PF07204 Orthoreo_P10: Orthore 42.8 14 0.0003 26.9 1.2 20 248-267 42-61 (98)
125 smart00397 t_SNARE Helical reg 42.7 90 0.002 20.0 9.6 57 184-240 6-62 (66)
126 PRK01026 tetrahydromethanopter 42.6 1.2E+02 0.0025 21.3 6.6 13 213-225 24-36 (77)
127 PF12911 OppC_N: N-terminal TM 42.5 71 0.0015 20.3 4.6 9 238-246 9-17 (56)
128 PF00429 TLV_coat: ENV polypro 42.2 1.8E+02 0.0038 28.6 9.0 36 178-213 430-465 (561)
129 COG4218 MtrF Tetrahydromethano 41.8 1.1E+02 0.0025 20.9 5.6 56 212-268 18-73 (73)
130 PRK14749 hypothetical protein; 41.4 40 0.00086 19.1 2.6 16 248-263 1-16 (30)
131 PF06422 PDR_CDR: CDR ABC tran 41.1 46 0.00099 24.6 3.8 35 229-263 32-66 (103)
132 PRK10132 hypothetical protein; 40.8 1.5E+02 0.0033 22.2 11.6 50 212-264 46-102 (108)
133 PF04639 Baculo_E56: Baculovir 40.6 23 0.0005 31.3 2.4 24 245-268 275-298 (305)
134 PRK04406 hypothetical protein; 40.3 1.3E+02 0.0027 21.0 7.8 46 184-229 12-57 (75)
135 PRK13865 type IV secretion sys 40.1 1E+02 0.0022 26.4 6.3 10 242-251 34-43 (229)
136 TIGR03745 conj_TIGR03745 integ 40.0 76 0.0016 23.7 4.7 45 223-267 52-97 (104)
137 KOG0859 Synaptobrevin/VAMP-lik 39.9 84 0.0018 26.3 5.4 16 207-222 136-151 (217)
138 COG4575 ElaB Uncharacterized c 39.8 1.6E+02 0.0034 22.0 7.6 45 25-69 10-56 (104)
139 KOG3850 Predicted membrane pro 39.1 3.2E+02 0.007 25.4 12.1 50 177-227 301-351 (455)
140 PRK09793 methyl-accepting prot 38.9 3.6E+02 0.0078 25.9 11.8 56 177-232 430-485 (533)
141 KOG3894 SNARE protein Syntaxin 38.9 2.9E+02 0.0063 24.8 12.1 83 183-266 225-311 (316)
142 PF01601 Corona_S2: Coronaviru 37.9 11 0.00023 36.7 0.0 28 223-251 523-550 (610)
143 PF07544 Med9: RNA polymerase 37.7 70 0.0015 22.7 4.2 29 178-206 54-82 (83)
144 PF14523 Syntaxin_2: Syntaxin- 36.9 1.6E+02 0.0034 21.1 6.7 95 21-117 4-100 (102)
145 PF10661 EssA: WXG100 protein 36.6 47 0.001 26.3 3.5 16 208-223 79-94 (145)
146 PF05597 Phasin: Poly(hydroxya 36.4 1.2E+02 0.0025 23.7 5.6 31 39-69 96-128 (132)
147 PF07457 DUF1516: Protein of u 36.4 68 0.0015 24.2 4.1 31 228-258 75-105 (110)
148 PRK08147 flgK flagellar hook-a 36.0 1.3E+02 0.0027 29.3 7.0 28 55-82 158-185 (547)
149 PF11190 DUF2976: Protein of u 35.8 1.7E+02 0.0036 21.1 6.8 45 223-267 36-81 (87)
150 PF07432 Hc1: Histone H1-like 35.8 2E+02 0.0043 21.9 6.4 46 195-240 2-47 (123)
151 PHA03240 envelope glycoprotein 35.7 35 0.00076 28.9 2.7 11 249-259 212-222 (258)
152 PF00435 Spectrin: Spectrin re 35.6 1.5E+02 0.0032 20.5 8.4 13 21-33 9-21 (105)
153 PRK00720 tatA twin arginine tr 35.3 38 0.00083 23.9 2.4 12 251-262 9-20 (78)
154 PF06388 DUF1075: Protein of u 35.2 62 0.0013 25.7 3.9 23 243-265 90-112 (146)
155 PF09788 Tmemb_55A: Transmembr 35.2 40 0.00088 29.2 3.0 17 249-265 198-214 (256)
156 COG4068 Uncharacterized protei 35.1 81 0.0017 20.9 3.7 9 234-242 33-41 (64)
157 PRK10884 SH3 domain-containing 34.7 2.8E+02 0.006 23.3 12.8 39 197-235 118-156 (206)
158 PF02038 ATP1G1_PLM_MAT8: ATP1 34.0 53 0.0011 21.1 2.7 16 252-267 18-33 (50)
159 PF13807 GNVR: G-rich domain o 34.0 1.2E+02 0.0025 21.1 4.9 18 187-204 8-25 (82)
160 KOG0972 Huntingtin interacting 33.9 2.9E+02 0.0064 24.7 8.1 60 57-118 230-289 (384)
161 PRK08471 flgK flagellar hook-a 33.6 1.3E+02 0.0029 29.8 6.7 54 55-108 162-217 (613)
162 PHA03231 glycoprotein BALF4; P 33.4 1.4E+02 0.003 30.7 6.9 20 92-111 435-454 (829)
163 PRK15048 methyl-accepting chem 33.2 4.5E+02 0.0097 25.3 11.8 53 177-229 432-484 (553)
164 PF04835 Pox_A9: A9 protein co 33.0 98 0.0021 20.1 3.8 27 241-267 17-44 (54)
165 PF10498 IFT57: Intra-flagella 32.9 2.2E+02 0.0048 26.2 7.7 62 57-120 223-284 (359)
166 COG5278 Predicted periplasmic 32.9 3E+02 0.0065 23.2 10.1 14 179-192 104-117 (207)
167 PF05227 CHASE3: CHASE3 domain 32.8 2.1E+02 0.0045 21.4 9.1 22 98-119 111-132 (138)
168 PHA02675 ORF104 fusion protein 32.7 1.8E+02 0.004 20.7 6.7 33 195-227 42-74 (90)
169 PRK02119 hypothetical protein; 32.5 1.7E+02 0.0037 20.2 8.0 47 183-229 9-55 (73)
170 PHA02975 hypothetical protein; 32.4 54 0.0012 22.4 2.7 19 250-268 44-62 (69)
171 PHA02414 hypothetical protein 32.3 2.1E+02 0.0044 21.1 9.8 45 184-228 30-74 (111)
172 COG2857 CYT1 Cytochrome c1 [En 32.1 32 0.0007 29.9 2.0 47 218-264 193-239 (250)
173 PF11119 DUF2633: Protein of u 31.9 64 0.0014 21.4 2.9 20 241-260 4-23 (59)
174 PHA03332 membrane glycoprotein 31.8 4.8E+02 0.01 27.8 10.2 61 23-83 894-963 (1328)
175 PF13124 DUF3963: Protein of u 31.8 65 0.0014 19.0 2.6 15 240-254 16-30 (40)
176 PRK10856 cytoskeletal protein 31.2 46 0.00099 30.2 2.9 25 238-262 104-128 (331)
177 PF01105 EMP24_GP25L: emp24/gp 31.0 16 0.00035 29.0 0.0 20 182-201 111-130 (183)
178 PF08653 DASH_Dam1: DASH compl 30.9 56 0.0012 21.6 2.5 28 21-48 6-33 (58)
179 PHA03046 Hypothetical protein; 30.8 2.6E+02 0.0056 21.8 7.3 53 175-227 76-128 (142)
180 PF05008 V-SNARE: Vesicle tran 30.8 1.8E+02 0.0038 19.9 8.0 29 179-207 21-49 (79)
181 KOG2546 Abl interactor ABI-1, 30.8 2.4E+02 0.0052 26.6 7.3 50 179-228 51-100 (483)
182 KOG3850 Predicted membrane pro 30.8 4.5E+02 0.0097 24.5 13.3 61 172-232 305-367 (455)
183 PF04888 SseC: Secretion syste 30.7 1.9E+02 0.0042 25.5 6.9 23 221-243 33-55 (306)
184 PF03908 Sec20: Sec20; InterP 30.7 2E+02 0.0044 20.5 11.9 46 220-265 38-87 (92)
185 PF02167 Cytochrom_C1: Cytochr 30.6 1.5E+02 0.0032 25.3 5.7 33 231-263 176-208 (219)
186 COG3462 Predicted membrane pro 30.4 58 0.0013 24.5 2.8 13 249-261 50-62 (117)
187 PRK06945 flgK flagellar hook-a 30.4 1.7E+02 0.0036 29.3 6.9 27 55-81 158-184 (651)
188 PF04642 DUF601: Protein of un 29.1 87 0.0019 27.2 4.0 38 1-38 133-172 (311)
189 PRK01833 tatA twin arginine tr 29.1 56 0.0012 22.8 2.4 9 252-260 10-18 (74)
190 PRK13848 conjugal transfer pro 29.0 2.3E+02 0.005 20.7 5.9 60 51-114 4-63 (98)
191 PF07889 DUF1664: Protein of u 28.7 2.8E+02 0.006 21.5 8.4 37 183-219 89-125 (126)
192 PRK06799 flgK flagellar hook-a 28.6 2.1E+02 0.0046 26.9 7.0 26 56-81 163-188 (431)
193 PF14966 DNA_repr_REX1B: DNA r 28.5 1.3E+02 0.0029 22.0 4.5 27 18-44 38-64 (97)
194 PF04065 Not3: Not1 N-terminal 28.1 3.9E+02 0.0084 23.0 11.3 92 20-118 5-97 (233)
195 PF09548 Spore_III_AB: Stage I 28.0 1.8E+02 0.0038 23.5 5.6 14 244-257 154-167 (170)
196 PF13060 DUF3921: Protein of u 28.0 77 0.0017 20.1 2.6 24 195-218 13-36 (58)
197 PTZ00478 Sec superfamily; Prov 27.9 2.3E+02 0.0049 20.2 5.3 29 214-242 14-42 (81)
198 PF06738 DUF1212: Protein of u 27.8 1.2E+02 0.0025 24.8 4.6 29 223-251 80-108 (193)
199 PF11026 DUF2721: Protein of u 27.7 2.7E+02 0.0059 21.4 6.4 9 231-239 49-57 (130)
200 PRK13895 conjugal transfer pro 27.7 3.1E+02 0.0067 21.7 8.7 9 226-234 103-111 (144)
201 PF11593 Med3: Mediator comple 27.0 1.8E+02 0.004 26.7 5.9 17 99-115 76-92 (379)
202 KOG1962 B-cell receptor-associ 26.8 4E+02 0.0086 22.7 9.1 61 55-118 149-209 (216)
203 PF13747 DUF4164: Domain of un 26.5 2.5E+02 0.0054 20.2 9.2 57 23-79 4-61 (89)
204 PF11298 DUF3099: Protein of u 26.5 97 0.0021 21.5 3.2 17 245-261 16-32 (73)
205 PRK11020 hypothetical protein; 26.2 2.9E+02 0.0063 20.9 8.2 45 25-69 3-50 (118)
206 PF11657 Activator-TraM: Trans 26.2 3.3E+02 0.0072 21.6 8.8 14 240-253 114-127 (144)
207 PF13038 DUF3899: Domain of un 26.2 88 0.0019 22.3 3.2 21 208-228 22-42 (92)
208 COG2966 Uncharacterized conser 26.1 1.3E+02 0.0027 26.2 4.7 34 220-253 99-132 (250)
209 PRK00846 hypothetical protein; 26.1 2.4E+02 0.0051 19.8 7.8 47 184-230 14-60 (77)
210 PF00584 SecE: SecE/Sec61-gamm 26.1 1E+02 0.0023 19.8 3.3 18 225-242 4-21 (57)
211 PF08693 SKG6: Transmembrane a 25.6 60 0.0013 19.8 1.8 10 257-266 23-32 (40)
212 PF05781 MRVI1: MRVI1 protein; 25.5 2.4E+02 0.0053 27.4 6.7 7 108-114 315-321 (538)
213 PRK12714 flgK flagellar hook-a 25.5 2.5E+02 0.0054 27.9 7.1 27 55-81 157-183 (624)
214 PF04888 SseC: Secretion syste 25.2 3.1E+02 0.0067 24.2 7.2 29 221-249 29-57 (306)
215 PF06789 UPF0258: Uncharacteri 25.2 16 0.00034 29.1 -1.0 7 240-246 128-134 (159)
216 PF11945 WASH_WAHD: WAHD domai 25.1 3.9E+02 0.0084 23.9 7.6 35 195-229 34-68 (297)
217 PF15188 CCDC-167: Coiled-coil 25.0 2.7E+02 0.0057 20.0 6.7 58 26-83 4-65 (85)
218 PRK09759 small toxic polypepti 24.8 94 0.002 19.9 2.7 14 249-262 9-22 (50)
219 PF09771 Tmemb_18A: Transmembr 24.4 3.3E+02 0.0071 21.0 6.1 41 223-263 5-46 (125)
220 COG4942 Membrane-bound metallo 24.1 6.1E+02 0.013 23.9 10.0 55 180-234 42-96 (420)
221 TIGR02833 spore_III_AB stage I 24.0 2.3E+02 0.0049 22.9 5.6 17 242-258 152-168 (170)
222 KOG4025 Putative apoptosis rel 24.0 4E+02 0.0087 21.7 10.0 19 93-111 158-176 (207)
223 PF09716 ETRAMP: Malarial earl 23.9 87 0.0019 22.3 2.7 10 245-254 52-61 (84)
224 COG4372 Uncharacterized protei 23.8 6.1E+02 0.013 23.8 21.6 70 166-239 214-283 (499)
225 PF04210 MtrG: Tetrahydrometha 23.7 2.5E+02 0.0054 19.3 7.5 12 213-224 21-32 (70)
226 PRK08307 stage III sporulation 23.7 2.2E+02 0.0047 23.1 5.4 17 242-258 153-169 (171)
227 PRK09738 small toxic polypepti 23.6 92 0.002 20.1 2.5 15 248-262 10-24 (52)
228 COG4847 Uncharacterized protei 23.4 3E+02 0.0066 20.2 7.0 43 36-78 59-101 (103)
229 PF07820 TraC: TraC-like prote 22.8 3.1E+02 0.0067 20.0 5.9 60 52-115 4-63 (92)
230 PF02532 PsbI: Photosystem II 22.8 1.7E+02 0.0038 17.2 3.3 14 249-262 8-21 (36)
231 TIGR01478 STEVOR variant surfa 22.8 86 0.0019 27.8 3.0 31 51-81 56-86 (295)
232 KOG4112 Signal peptidase subun 22.8 1.1E+02 0.0023 22.4 2.9 25 241-265 21-45 (101)
233 PF02009 Rifin_STEVOR: Rifin/s 22.8 67 0.0015 28.7 2.4 27 51-77 33-59 (299)
234 PF04728 LPP: Lipoprotein leuc 22.8 2.3E+02 0.0051 18.6 6.9 14 184-197 4-17 (56)
235 PRK10573 type IV pilin biogene 22.6 4.1E+02 0.009 24.4 7.7 38 188-225 111-148 (399)
236 PRK10404 hypothetical protein; 22.6 3.2E+02 0.007 20.1 12.1 33 213-245 40-80 (101)
237 PF10140 YukC: WXG100 protein 22.5 40 0.00087 31.0 0.9 16 251-266 200-215 (359)
238 smart00502 BBC B-Box C-termina 22.2 3.2E+02 0.0069 19.9 8.7 50 188-237 37-87 (127)
239 PTZ00370 STEVOR; Provisional 22.2 90 0.002 27.7 3.0 32 50-81 54-85 (296)
240 PRK14758 hypothetical protein; 21.9 1.5E+02 0.0033 16.2 3.3 14 251-264 9-22 (27)
241 KOG1693 emp24/gp25L/p24 family 21.8 4.4E+02 0.0095 22.2 6.7 19 179-197 127-145 (209)
242 PF06103 DUF948: Bacterial pro 21.5 3E+02 0.0065 19.3 7.4 51 183-237 33-83 (90)
243 cd07909 YciF YciF bacterial st 21.4 4.2E+02 0.009 21.0 8.2 59 48-111 27-85 (147)
244 KOG3385 V-SNARE [Intracellular 21.4 3.8E+02 0.0081 20.4 7.0 61 23-83 32-93 (118)
245 PF15106 TMEM156: TMEM156 prot 21.4 83 0.0018 26.6 2.5 18 250-267 176-193 (226)
246 KOG4812 Golgi-associated prote 21.4 1.1E+02 0.0023 26.6 3.1 21 245-265 222-242 (262)
247 PF09032 Siah-Interact_N: Siah 21.1 3.1E+02 0.0067 19.4 5.5 24 27-50 3-26 (79)
248 PF05399 EVI2A: Ectropic viral 20.9 95 0.0021 26.3 2.7 10 251-260 130-139 (227)
249 PTZ00046 rifin; Provisional 20.9 5.5E+02 0.012 23.6 7.8 65 50-117 52-117 (358)
250 PF10498 IFT57: Intra-flagella 20.9 6.6E+02 0.014 23.1 8.8 26 95-120 266-291 (359)
251 PF10864 DUF2663: Protein of u 20.9 1.8E+02 0.004 22.6 4.1 24 234-257 10-33 (130)
252 PRK08871 flgK flagellar hook-a 20.8 3.5E+02 0.0075 27.0 7.1 27 55-81 160-186 (626)
253 PRK10573 type IV pilin biogene 20.7 4.8E+02 0.01 23.9 7.8 8 227-234 139-146 (399)
254 PF13396 PLDc_N: Phospholipase 20.5 98 0.0021 18.8 2.2 8 245-252 21-28 (46)
255 PF01519 DUF16: Protein of unk 20.4 3.7E+02 0.008 20.0 8.4 54 183-236 37-92 (102)
256 PRK11637 AmiB activator; Provi 20.3 7E+02 0.015 23.2 22.8 23 22-44 42-64 (428)
257 KOG4684 Uncharacterized conser 20.2 1.2E+02 0.0027 25.7 3.2 11 254-264 215-225 (275)
258 PF15168 TRIQK: Triple QxxK/R 20.1 3.2E+02 0.0069 19.1 4.7 15 249-263 53-67 (79)
259 TIGR02908 CoxD_Bacillus cytoch 20.0 2.4E+02 0.0051 21.3 4.4 30 237-266 16-45 (110)
260 TIGR01478 STEVOR variant surfa 20.0 86 0.0019 27.8 2.4 12 107-118 71-82 (295)
No 1
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-42 Score=297.05 Aligned_cols=260 Identities=30% Similarity=0.373 Sum_probs=208.6
Q ss_pred CCccccccCCCCCCCCC-CCchHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024426 1 MSFQDLQNGSRSSPSSS-SKSPSQAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKS 79 (268)
Q Consensus 1 msf~~~~~~~~~~~~~~-f~~~~~~i~~~i~~i~~~v~~l~~~~~~l~t~~d~~~~~~~i~~l~~~i~~l~~~~~~~l~~ 79 (268)
||+.+.+.|++...+++ |..++.+|+..|+.++..+..|.+.+..+|++.|+++++++++.....+..+++.+...|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~i~~i~~~~~~l~r~~~~lgt~~ds~~lr~kl~~~~~~~~~~vkdt~~~lke 80 (269)
T KOG0811|consen 1 DSEAEAEGGGSTQEEPFDFQQLAQEIAANIQRINQQVLSLLRFLNSLGTKSDSPELRDKLHQERLNANQLVKDTSALLKE 80 (269)
T ss_pred CcccccCCCCCCcCCCCcHhHHHHHHHHHHHHHhHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666655433333 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCC-CCCCCCCCCCCCCCCchhhhhH
Q 024426 80 VSESDRDTDVNQNKKVEDAKLARDFQTVLQEFQKIQQLASERESTYSPSVPPSSAPP-STTDTSGSGDFMGSENQPFLME 158 (268)
Q Consensus 80 l~~~~~~~~~~~~~k~~~~~L~~~f~~~l~~fq~~q~~~~~r~k~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~ 158 (268)
+..... .+..+..|.+.++|.++|...+++|+.+|+...++++ .+..+.++..+ ... .++....+.......
T Consensus 81 ~~~~~~-~~~~~~~k~~~~kL~~ef~~~l~efq~vQrk~ae~ek--~~~~a~~s~~s~~~~----~~~~~~~~~~~~~~~ 153 (269)
T KOG0811|consen 81 IDTLRL-ESDLRQLKIQLDKLVDEFSAALKEFQKVQRKSAEREK--IPMVARGSQNSQQLD----EESPRVDELSNNGSQ 153 (269)
T ss_pred HHHhcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc--ccccccccccchhhh----hhhhhhhhhhccchh
Confidence 998765 4456899999999999999999999999999999988 23222221111 110 000000000000001
Q ss_pred HHHH-HHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 024426 159 QKRQ-ELFLL-DNEIAFNEAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQLAK 236 (268)
Q Consensus 159 ~~~~-ql~~~-~~e~~~~~~~i~eR~~eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a~~~l~~ 236 (268)
.+++ +.... .++..|+..++++|...|.+||+.|.|||+||+|||.||++||++||+||+||++|..||++|+.+|.+
T Consensus 154 ~~~q~e~~~q~~e~~~~~~~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~k 233 (269)
T KOG0811|consen 154 SQQQLEEQAQDNEILEYQLDLIEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRK 233 (269)
T ss_pred hhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 22222 223677888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccchhHHHHHHHHHHHHHHHHHHHh
Q 024426 237 ASKNVKSRSSWCWWVLAIIVVALVILLLVFI 267 (268)
Q Consensus 237 a~~~qk~~rk~~~~~~i~~~i~~~ii~~~l~ 267 (268)
|.+||+++|||+||++++++++++|+++++.
T Consensus 234 A~~yq~~~~k~~~~ll~v~~~v~lii~l~i~ 264 (269)
T KOG0811|consen 234 AAKYQRKARKKKCILLLVGGPVGLIIGLIIA 264 (269)
T ss_pred HHHHHHHhcCchhhhhHHHHHHHHHHHHHHH
Confidence 9999999999999999888888888887765
No 2
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-42 Score=302.58 Aligned_cols=240 Identities=19% Similarity=0.333 Sum_probs=202.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHH-HcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-------CCcch
Q 024426 18 SKSPSQAVAAGIFQINTAVAAFRRLVD-AIGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSESD-------RDTDV 89 (268)
Q Consensus 18 f~~~~~~i~~~i~~i~~~v~~l~~~~~-~l~t~~d~~~~~~~i~~l~~~i~~l~~~~~~~l~~l~~~~-------~~~~~ 89 (268)
|+..+++|...|..+...+..|++++. .|.++...+.++++++.+...+....+.++..|+.+.+.+ +++++
T Consensus 38 Ff~~ve~Ir~~i~~l~~~~~~l~~~hs~~l~~~~~~~~~k~~l~~~~~~~~~~a~~Ik~kL~~~e~~~~~~~~~~~~~~~ 117 (297)
T KOG0810|consen 38 FFEDVEEIRDDIEKLDEDVEKLQKLHSKSLHSPNADKELKRKLESLVDEIRRRARKIKTKLKALEKENEADETQNRSSAG 117 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCcc
Confidence 999999999999999999999999986 4778888899999999999999999999999999998752 24667
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hcCCCCCCCCCCCCCCCCCCCCCCCCCCchhhhhHHHHHHH
Q 024426 90 NQNKKVEDAKLARDFQTVLQEFQKIQQLASERES-----TYSPSVPPSSAPPSTTDTSGSGDFMGSENQPFLMEQKRQEL 164 (268)
Q Consensus 90 ~~~~k~~~~~L~~~f~~~l~~fq~~q~~~~~r~k-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ql 164 (268)
.++++++...+.+.|.++|..|+.++..|+++++ +|..+.|....+++.+.++++|++..|.+..+. .+++.
T Consensus 118 ~r~rrtq~~~~~kkf~~~M~~f~~~~~~~r~~~k~~i~Rql~i~~~~~~~de~ie~~ie~g~~~~f~~~~i~---~~~~~ 194 (297)
T KOG0810|consen 118 LRTRRTQTSALSKKLKELMNEFNRTQSKYREEYKERIQRQLFIVGGEETTDEEIEEMIESGGSEVFTQKAIQ---DRGQA 194 (297)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcCChHHHHHHHHCCChHHHHHHHHH---Hhhhh
Confidence 8999999999999999999999999999987664 333444533223333456777777766553333 12222
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 024426 165 FLLDNEIAFNEAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQLAKASKNVKSR 244 (268)
Q Consensus 165 ~~~~~e~~~~~~~i~eR~~eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a~~~l~~a~~~qk~~ 244 (268)
.. .+.+ +++||.+|++||++|.||++||.|||.||+.||+|||+||+||.+|.+||++|+.++.+|..|||++
T Consensus 195 ~~-----~l~E--iq~Rh~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkka 267 (297)
T KOG0810|consen 195 KQ-----TLAE--IQERHDEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKA 267 (297)
T ss_pred HH-----HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11 2344 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHh
Q 024426 245 SSWCWWVLAIIVVALVILLLVFI 267 (268)
Q Consensus 245 rk~~~~~~i~~~i~~~ii~~~l~ 267 (268)
|||+||+++|++|+++|++++++
T Consensus 268 RK~k~i~ii~~iii~~v~v~~i~ 290 (297)
T KOG0810|consen 268 RKWKIIIIIILIIIIVVLVVVIV 290 (297)
T ss_pred hhceeeeehHHHHHHHHHhhhhc
Confidence 99999999888888888877765
No 3
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.7e-36 Score=253.31 Aligned_cols=241 Identities=22% Similarity=0.286 Sum_probs=191.0
Q ss_pred CC-CCchHHHHHHHHHHHHHHHHHHHHHHHH--cCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC--Ccchh
Q 024426 16 SS-SKSPSQAVAAGIFQINTAVAAFRRLVDA--IGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSESDR--DTDVN 90 (268)
Q Consensus 16 ~~-f~~~~~~i~~~i~~i~~~v~~l~~~~~~--l~t~~d~~~~~~~i~~l~~~i~~l~~~~~~~l~~l~~~~~--~~~~~ 90 (268)
+| |...+++|+..+.+++.++.+|-+.+.. .+++.|..+-+..|+.++..|++++++|.+.|+.++...+ +++..
T Consensus 56 pP~wvd~~~ev~~~l~rvrrk~~eLgk~~~Khl~PsF~Dk~ede~~IE~ltq~Itqll~~cqk~iq~~~a~~n~~~~~e~ 135 (305)
T KOG0809|consen 56 PPAWVDVAEEVDYYLSRVRRKIDELGKAHAKHLRPSFSDKREDEHEIEELTQEITQLLQKCQKLIQRLSASLNQLSPSER 135 (305)
T ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHH
Confidence 45 9999999999999999999999999874 5778888888999999999999999999999999988654 23445
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHhhH
Q 024426 91 QNKKVEDAKLARDFQTVLQEFQKIQQLASERESTYSPSVPPSSAPPSTTDTSGSGDFMGSENQPFLMEQKRQELFLLDNE 170 (268)
Q Consensus 91 ~~~k~~~~~L~~~f~~~l~~fq~~q~~~~~r~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ql~~~~~e 170 (268)
..+++.+..+..+++.+..+|+..|..|.++.+..... +.. ..+..++.+..++...+....+. .+|++..
T Consensus 136 ~~~~n~~~~la~~LQ~~s~~fR~~Qs~YLK~l~~~ee~-~~~-~e~~~~~~~~~~dd~d~~~~~~q----e~ql~~~--- 206 (305)
T KOG0809|consen 136 LLRKNAQGYLALQLQTLSREFRGLQSKYLKRLRNREEN-SQE-YEDSLDNTVDLPDDEDFSDRTFQ----EQQLMLF--- 206 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhc-ccc-hhhhccccccCcchhhhhhhhHH----HHHHHHH---
Confidence 67889999999999999999999999999876543211 100 00001111111121212111121 2233322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhccchhHHH
Q 024426 171 IAFNEAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQLAKASKNVKSRSSWCWW 250 (268)
Q Consensus 171 ~~~~~~~i~eR~~eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a~~~l~~a~~~qk~~rk~~~~ 250 (268)
.-++..+.||++||.++.+||.||++||+||+.||.+||.+||+|||||+++..+++.|.++|.||..|||+++|++||
T Consensus 207 -e~~~~~~~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~yQk~~~k~~~i 285 (305)
T KOG0809|consen 207 -ENNEEVVREREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAERYQKRNKKMKVI 285 (305)
T ss_pred -hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHHHHHhcCCceEeh
Confidence 2256789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 024426 251 VLAIIVVALVILLLVF 266 (268)
Q Consensus 251 ~~i~~~i~~~ii~~~l 266 (268)
++++++|+++++++++
T Consensus 286 ~~L~l~ii~llvllil 301 (305)
T KOG0809|consen 286 LMLTLLIIALLVLLIL 301 (305)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 8887777777777665
No 4
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=99.97 E-value=4.6e-29 Score=210.74 Aligned_cols=233 Identities=21% Similarity=0.298 Sum_probs=170.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHH--cCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCcchhhHHHH
Q 024426 18 SKSPSQAVAAGIFQINTAVAAFRRLVDA--IGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKKV 95 (268)
Q Consensus 18 f~~~~~~i~~~i~~i~~~v~~l~~~~~~--l~t~~d~~~~~~~i~~l~~~i~~l~~~~~~~l~~l~~~~~~~~~~~~~k~ 95 (268)
|.....+|...+..+..++..+.+.... +..+.|...-.+.|..+...++..+.+|...++...... ....
T Consensus 36 ~i~~~~~v~~~l~~vrr~~~~l~~~y~k~~~p~f~~k~~k~~ei~~L~~kv~~~l~~~~ki~~~~~~~~-------~s~~ 108 (283)
T COG5325 36 FILSAASVDQELTAVRRSISRLGKVYAKHTEPSFSDKSEKEDEIDELSKKVNQDLQRCEKILKTKYKNL-------QSSF 108 (283)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH
Confidence 8899999999999999999999888653 566777776677788888888888888877776654321 1122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh---hcC-----CCCCCCCCCCCCCCCCCCCCCCCCCchhhhhHHHHHHHHHH
Q 024426 96 EDAKLARDFQTVLQEFQKIQQLASERES---TYS-----PSVPPSSAPPSTTDTSGSGDFMGSENQPFLMEQKRQELFLL 167 (268)
Q Consensus 96 ~~~~L~~~f~~~l~~fq~~q~~~~~r~k---~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ql~~~ 167 (268)
...+|...++-....++..|+....-.+ .+. .......+.++..+.... ...+++++ ++...+
T Consensus 109 ~~~kll~~~nt~~~~~~~iq~~~aq~r~~~~~~~k~l~~~~~~~~~l~eee~e~~~~---~~~sq~~l------qq~~l~ 179 (283)
T COG5325 109 LQSKLLRDLNTECMEGQRIQQKSAQFRKYQVLQAKFLRNKNNDQHPLEEEEDEESLS---SLGSQQTL------QQQGLS 179 (283)
T ss_pred HHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhHHHHhcccccCchhhhhhhhhhh---ccchhhHH------HHhhhh
Confidence 3567778888888888888776543211 111 111111111111110000 01111122 122235
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhccchh
Q 024426 168 DNEIAFNEAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQLAKASKNVKSRSSW 247 (268)
Q Consensus 168 ~~e~~~~~~~i~eR~~eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a~~~l~~a~~~qk~~rk~ 247 (268)
+++.+|+..++.+|.++|.+|.++|.||++||+||+.+|.+||++||+||+|++++..|++.|+++|.+|..|||+++||
T Consensus 180 ~ee~~~qq~l~~er~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrrt~k~ 259 (283)
T COG5325 180 NEELEYQQILITERDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRRTKKC 259 (283)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhhhccc
Confidence 67888888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024426 248 CWWVLAIIVVALVILLLVF 266 (268)
Q Consensus 248 ~~~~~i~~~i~~~ii~~~l 266 (268)
..|++++++||++++.+++
T Consensus 260 ~~~~Llil~vv~lfv~l~~ 278 (283)
T COG5325 260 RFYLLLILLVVLLFVSLIK 278 (283)
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 8888777777777766654
No 5
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=99.97 E-value=4.6e-29 Score=205.07 Aligned_cols=236 Identities=17% Similarity=0.235 Sum_probs=184.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHcCCCc---ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCcchhhHHH
Q 024426 18 SKSPSQAVAAGIFQINTAVAAFRRLVDAIGTSK---DTLDHRQKLHNTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKK 94 (268)
Q Consensus 18 f~~~~~~i~~~i~~i~~~v~~l~~~~~~l~t~~---d~~~~~~~i~~l~~~i~~l~~~~~~~l~~l~~~~~~~~~~~~~k 94 (268)
|......|..++..+...+.++..+|..+-+-. ....++..|+..+.+++.|-..++..++......- -...++
T Consensus 23 f~~~i~si~~n~s~~e~~i~qi~~~h~d~L~Ev~e~~~~~~~~~ldnf~s~t~~Lq~~~k~di~~~e~~~i---hl~~k~ 99 (280)
T COG5074 23 FMNKILSINKNLSVYEKEINQIDNLHKDLLTEVFEEQSRKLRRSLDNFSSQTTDLQRNLKKDIKSAERDGI---HLANKQ 99 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhccc---chhhHH
Confidence 777999999999999999999999988654322 24568899999999999999999999988776432 235667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhcCCCCCCCCCCCCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHhh
Q 024426 95 VEDAKLARDFQTVLQEFQKIQQLASERE-----STYSPSVPPSSAPPSTTDTSGSGDFMGSENQPFLMEQKRQELFLLDN 169 (268)
Q Consensus 95 ~~~~~L~~~f~~~l~~fq~~q~~~~~r~-----k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ql~~~~~ 169 (268)
.|-+...++|-++++.|+.++..|++-+ ++|..+.|.++ .++.+.+++..++.....++++...++++..
T Consensus 100 aQae~~r~Kf~~~I~~yr~i~~~yree~~e~~rrQy~Ia~P~AT-Edeve~aInd~nG~qvfsqalL~anr~geAk---- 174 (280)
T COG5074 100 AQAENVRQKFLKLIQDYRIIDSNYREEEKEQARRQYIIAQPEAT-EDEVEAAINDVNGQQVFSQALLNANRRGEAK---- 174 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhcCCccc-hHHHHHHhcccchHHHHHHHHHhcCccchHH----
Confidence 7888899999999999999999988533 35666778773 4444444444333333445676655554332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhccchhHH
Q 024426 170 EIAFNEAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQLAKASKNVKSRSSWCW 249 (268)
Q Consensus 170 e~~~~~~~i~eR~~eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a~~~l~~a~~~qk~~rk~~~ 249 (268)
-.+ ..+++||++|++||++|.||-++|+||+.||.+|.++||.|+.|+.++..+++.|+.++.+|.+|.|++||++|
T Consensus 175 -taL--~Evq~Rh~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~AvksaRaaRkkki 251 (280)
T COG5074 175 -TAL--AEVQARHQEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKSARAARKKKI 251 (280)
T ss_pred -HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHHHHHHHhcce
Confidence 122 34999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred H-HHHHHHHHHHHHHH
Q 024426 250 W-VLAIIVVALVILLL 264 (268)
Q Consensus 250 ~-~~i~~~i~~~ii~~ 264 (268)
. +.+|++|+++|+.+
T Consensus 252 ~c~gI~~iii~viv~v 267 (280)
T COG5074 252 RCYGICFIIIIVIVVV 267 (280)
T ss_pred ehhhhHHHHHHHHHHH
Confidence 4 34444444444333
No 6
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=1.3e-18 Score=147.91 Aligned_cols=241 Identities=18% Similarity=0.285 Sum_probs=149.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---ccCCcch---hh
Q 024426 18 SKSPSQAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSE---SDRDTDV---NQ 91 (268)
Q Consensus 18 f~~~~~~i~~~i~~i~~~v~~l~~~~~~l~t~~d~~~~~~~i~~l~~~i~~l~~~~~~~l~~l~~---~~~~~~~---~~ 91 (268)
|...+..|...|...-.+++.|-.+.+.-.-+.|.+ -+|..++.-|++.+..+...+-.|.. ..++-++ ..
T Consensus 43 F~~~A~~Ig~~is~T~~kl~kLa~lAKrks~f~Dr~---VeI~eLT~iikqdi~sln~~i~~Lqei~~~~gn~s~~~~~~ 119 (311)
T KOG0812|consen 43 FNKKASRIGKEISQTGAKLEKLAQLAKRKSLFDDRP---VEIQELTFIIKQDITSLNSQIAQLQEIVKANGNLSNKQLVQ 119 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcc---hhhHHHHHHHhcchHHHHHHHHHHHHHHHHhccccchHhhh
Confidence 999999999999999999999999888655555554 25566666666655555554444433 2222121 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhhhc----CCCCCCCCCC--CCCC--CCCCCCCCCCCCc-hhh
Q 024426 92 NKKVEDAKLARDFQTVLQEFQKI-------QQLASERESTY----SPSVPPSSAP--PSTT--DTSGSGDFMGSEN-QPF 155 (268)
Q Consensus 92 ~~k~~~~~L~~~f~~~l~~fq~~-------q~~~~~r~k~~----~~~~~~~~~~--~~~~--~~~~~~~~~~~~~-~~l 155 (268)
.-++.+..|...+.++...|+.+ -...+.|...+ -+..+....| ..+. ..+....+...+. .++
T Consensus 120 Hs~~vV~~Lqs~la~is~~fk~VLE~Rtenmka~k~R~dkfs~~~a~~~a~p~~n~~a~~~~~~~l~~~~~~~sq~~~~l 199 (311)
T KOG0812|consen 120 HSKNVVVSLQSKLANISKDFKDVLEIRTENMKAVKNRRDKFSASYASLNANPVSNSAARLHPLKLLVDPKDEASQDVESL 199 (311)
T ss_pred hhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHhccccCCCCCcccCcccccCCchhhhcCchhhcccccccc
Confidence 33444555555555555555544 33332222111 1111100000 0000 0000000000000 000
Q ss_pred hh----HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHH
Q 024426 156 LM----EQKRQELFLLDNEIAFNEAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHAR 231 (268)
Q Consensus 156 ~~----~~~~~ql~~~~~e~~~~~~~i~eR~~eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a~ 231 (268)
.. .++.+|+..+++ .+.++++|.+.+..||.+|.||.+||.+||.||.+|||++-+||+||+.+.-+++.|.
T Consensus 200 n~gd~~~~qqqQm~ll~e----s~~Y~Q~R~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~ 275 (311)
T KOG0812|consen 200 NMGDSSNPQQQQMALLDE----SDEYVQERAKTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAH 275 (311)
T ss_pred cccCCCCCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHH
Confidence 00 011233333332 2457999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHhC
Q 024426 232 VQLAKASKNVKSRSSWCWWVLAIIVVALVILLLVFIL 268 (268)
Q Consensus 232 ~~l~~a~~~qk~~rk~~~~~~i~~~i~~~ii~~~l~~ 268 (268)
.+|.|....-.++| |.++-||+|+++++++|++|
T Consensus 276 ~ellKy~e~vSSNR---wLmvkiF~i~ivFflvfvlf 309 (311)
T KOG0812|consen 276 SELLKYFERVSSNR---WLMVKIFGILIVFFLVFVLF 309 (311)
T ss_pred HHHHHHHHHhccch---HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999998 45555777777777777765
No 7
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=99.62 E-value=4.8e-15 Score=101.47 Aligned_cols=63 Identities=30% Similarity=0.477 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhh
Q 024426 180 EREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQLAKASKNVK 242 (268)
Q Consensus 180 eR~~eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a~~~l~~a~~~qk 242 (268)
||+++|..|+.+|.+|++||.+|+.+|.+||++||+|++||+.|..++.+|..+|.+|.+|+|
T Consensus 1 e~d~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~~~k 63 (63)
T PF05739_consen 1 ERDEELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALKYQK 63 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 689999999999999999999999999999999999999999999999999999999999986
No 8
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=99.59 E-value=7.1e-15 Score=118.08 Aligned_cols=128 Identities=24% Similarity=0.325 Sum_probs=107.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC------Ccchh
Q 024426 18 SKSPSQAVAAGIFQINTAVAAFRRLVDAIGTSKD-TLDHRQKLHNTRQRILQLVKDTSAKLKSVSESDR------DTDVN 90 (268)
Q Consensus 18 f~~~~~~i~~~i~~i~~~v~~l~~~~~~l~t~~d-~~~~~~~i~~l~~~i~~l~~~~~~~l~~l~~~~~------~~~~~ 90 (268)
|+..+++|+..|..|+.++..|++++..+++..| .+.++.+++.+..+++.+++.++..|+.|...+. +++..
T Consensus 4 F~~~v~~I~~~i~~i~~~v~~l~~l~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~~~~~~~~~~s~~~ 83 (151)
T cd00179 4 FFEEVEEIRGNIDKISEDVEELQKLHSQLLTAPDADPELKQELESLVQEIKKLAKEIKGKLKELEESNEQNEALNGSSVD 83 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHH
Confidence 9999999999999999999999999999888777 7889999999999999999999999999987543 24568
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----cCCCCCCCCCCCCCCCCCCCCC
Q 024426 91 QNKKVEDAKLARDFQTVLQEFQKIQQLASEREST-----YSPSVPPSSAPPSTTDTSGSGD 146 (268)
Q Consensus 91 ~~~k~~~~~L~~~f~~~l~~fq~~q~~~~~r~k~-----~~~~~~~~~~~~~~~~~~~~~~ 146 (268)
|++++++.+|.++|+.+|.+|+.+|..|+++++. +..+.|.+ .+++.++++..|.
T Consensus 84 r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~k~~i~Rq~~i~~~~~-tdeei~~~~~~~~ 143 (151)
T cd00179 84 RIRKTQHSGLSKKFVEVMTEFNKAQRKYRERYKERIQRQLEITGGEA-TDEELEDMLESGN 143 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-ChHHHHHHHHcCC
Confidence 9999999999999999999999999999987753 33455554 2333434444443
No 9
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=99.57 E-value=8.9e-14 Score=104.39 Aligned_cols=101 Identities=35% Similarity=0.585 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCcchhhHHHHHHHHHHHHH
Q 024426 25 VAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKKVEDAKLARDF 104 (268)
Q Consensus 25 i~~~i~~i~~~v~~l~~~~~~l~t~~d~~~~~~~i~~l~~~i~~l~~~~~~~l~~l~~~~~~~~~~~~~k~~~~~L~~~f 104 (268)
|+..|+.|+.++..|+++++.|||++|++++|++|+.+...++.+++.+...|+.+...+......+..+.+.++|.++|
T Consensus 1 is~~l~~in~~v~~l~k~~~~lGt~~Ds~~lR~~i~~~~~~~~~l~k~~~~~l~~l~~~~~~~~~~~~~k~~~~KL~~df 80 (102)
T PF14523_consen 1 ISSNLFKINQNVSQLEKLVNQLGTPRDSQELREKIHQLIQKTNQLIKEISELLKKLNSLSSDRSNDRQQKLQREKLSRDF 80 (102)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH-SSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSH----HHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999887323456788999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhc
Q 024426 105 QTVLQEFQKIQQLASERESTY 125 (268)
Q Consensus 105 ~~~l~~fq~~q~~~~~r~k~~ 125 (268)
+.++.+|+.+|+.|.++++.+
T Consensus 81 ~~~l~~fq~~q~~~~~~~k~~ 101 (102)
T PF14523_consen 81 KEALQEFQKAQRRYAEKEKQT 101 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999988764
No 10
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=99.53 E-value=1.5e-13 Score=105.55 Aligned_cols=106 Identities=28% Similarity=0.430 Sum_probs=96.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHcCCCccc-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-----Ccchhh
Q 024426 18 SKSPSQAVAAGIFQINTAVAAFRRLVDAIGTSKDT-LDHRQKLHNTRQRILQLVKDTSAKLKSVSESDR-----DTDVNQ 91 (268)
Q Consensus 18 f~~~~~~i~~~i~~i~~~v~~l~~~~~~l~t~~d~-~~~~~~i~~l~~~i~~l~~~~~~~l~~l~~~~~-----~~~~~~ 91 (268)
|+..+++|+..|..|+.++..|++++..++++.+. +.++.+++.+...++.+++.++..|+.|...+. ++++.|
T Consensus 6 F~~~v~~I~~~I~~i~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~~~~~~~~~~~~~r 85 (117)
T smart00503 6 FFEKVEEIRANIQKISQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAKLKELEKENLENRASGSASDR 85 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcccCCHhhh
Confidence 99999999999999999999999999988877664 679999999999999999999999999987643 235689
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024426 92 NKKVEDAKLARDFQTVLQEFQKIQQLASERES 123 (268)
Q Consensus 92 ~~k~~~~~L~~~f~~~l~~fq~~q~~~~~r~k 123 (268)
++++++.+|.++|+.+|.+|+.+|..|++++|
T Consensus 86 ~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~k 117 (117)
T smart00503 86 TRKAQTEKLRKKFKEVMNEFQRLQRKYREREK 117 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999998764
No 11
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=99.48 E-value=2.3e-13 Score=91.85 Aligned_cols=59 Identities=36% Similarity=0.603 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 024426 179 EEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQLAKA 237 (268)
Q Consensus 179 ~eR~~eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a~~~l~~a 237 (268)
++|++++..|+.+|.+|++||.+|+.+|.+||++||+|++|++.+..+++.|..+|.+|
T Consensus 2 ~e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l~ka 60 (60)
T cd00193 2 QERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLKKA 60 (60)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 57999999999999999999999999999999999999999999999999999999875
No 12
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=99.38 E-value=3.9e-12 Score=87.37 Aligned_cols=62 Identities=32% Similarity=0.547 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 024426 176 AIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQLAKA 237 (268)
Q Consensus 176 ~~i~eR~~eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a~~~l~~a 237 (268)
..+++|++++..|+.+|.++++||.+|+.+|.+||++||+|++|++.+..++..|..+|.+|
T Consensus 5 ~~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~l~~~ 66 (66)
T smart00397 5 QMEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKRLKKA 66 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC
Confidence 45899999999999999999999999999999999999999999999999999999999765
No 13
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=1.3e-09 Score=92.62 Aligned_cols=225 Identities=12% Similarity=0.142 Sum_probs=134.7
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-CCcchhhHHHH
Q 024426 17 SSKSPSQAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSESD-RDTDVNQNKKV 95 (268)
Q Consensus 17 ~f~~~~~~i~~~i~~i~~~v~~l~~~~~~l~t~~d~~~~~~~i~~l~~~i~~l~~~~~~~l~~l~~~~-~~~~~~~~~k~ 95 (268)
||+....++......++....+...+-+.. +.+.+.....|...+........+....+.+-.... -...+.+.|+.
T Consensus 7 p~~~v~~e~~k~~~~~~~~~~r~~~~~~~~--~~~~~~~t~~lr~~i~~~~edl~~~~~il~~~~~~~~ide~El~~R~~ 84 (235)
T KOG3202|consen 7 PFFRVKNETLKLSEEIQGLYQRRSELLKDT--GSDAEELTSVLRRSIEEDLEDLDELISILERNPSKFGIDEFELSRRRR 84 (235)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cchhHHHHHHHHHHhHHHHHHHHHHHHHHHhCcccccCcHHHHHHHHH
Confidence 498889988888888888888777776652 222222222222111111122222222222221111 12234677888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-hhhcCCCCCCCCCCCCCCCCC-CCCCCCCCCchhhhhHHHHHHHHHHhhHHHH
Q 024426 96 EDAKLARDFQTVLQEFQKIQQLASER-ESTYSPSVPPSSAPPSTTDTS-GSGDFMGSENQPFLMEQKRQELFLLDNEIAF 173 (268)
Q Consensus 96 ~~~~L~~~f~~~l~~fq~~q~~~~~r-~k~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~ql~~~~~e~~~ 173 (268)
.+..+..++..+-..|... .+... .+.... .+.. .|.....+. ..|.+ .. +....+
T Consensus 85 ~i~~lr~q~~~~~~~~~~~--~~~~~~~r~~l~-~~~~-~~~~~~~~~~~~~~D------~v------------~~~~~~ 142 (235)
T KOG3202|consen 85 FIDNLRTQLRQMKSKMAMS--GFANSNIRDILL-GPEK-SPNLDEAMSRASGLD------NV------------QEIVQL 142 (235)
T ss_pred HHHHHHHHHHHHHHHHHhh--ccccccchhhhc-CCCC-CCchhhhHHHhhccC------cH------------HHHHHH
Confidence 8888888887777777661 11110 000100 0000 010000000 00000 00 111234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Q 024426 174 NEAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQLAKASKNVKSRSSWCWWVLA 253 (268)
Q Consensus 174 ~~~~i~eR~~eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a~~~l~~a~~~qk~~rk~~~~~~i 253 (268)
+..++++.+..+..|+.+|+-++.+-..++..+.+||.++|+.++-++.+.+.+..+.+.|.+..+ .++.+.+||++++
T Consensus 143 qqqm~~eQDe~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~-~~s~~~~~~~il~ 221 (235)
T KOG3202|consen 143 QQQMLQEQDEGLDGLSATVQRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNR-MASQCSQWCAILL 221 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccccchhHHHH
Confidence 456799999999999999999999999999999999999999999999999999999999999999 4445555666666
Q ss_pred HHHHHHHHHHHHH
Q 024426 254 IIVVALVILLLVF 266 (268)
Q Consensus 254 ~~~i~~~ii~~~l 266 (268)
+++++++++++|+
T Consensus 222 l~~~~~lvv~i~~ 234 (235)
T KOG3202|consen 222 LVGLLLLVVIIFI 234 (235)
T ss_pred HHHHHHHHHHHhc
Confidence 6666666665554
No 14
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=99.02 E-value=3.8e-09 Score=78.77 Aligned_cols=91 Identities=19% Similarity=0.309 Sum_probs=79.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHH-cCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-------CCcch
Q 024426 18 SKSPSQAVAAGIFQINTAVAAFRRLVDA-IGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSESD-------RDTDV 89 (268)
Q Consensus 18 f~~~~~~i~~~i~~i~~~v~~l~~~~~~-l~t~~d~~~~~~~i~~l~~~i~~l~~~~~~~l~~l~~~~-------~~~~~ 89 (268)
|+..+++|...|..|...+..|+.++.. |.++.++..++.+|+.++.+|+.++..|+..|+.|.... .++.+
T Consensus 5 f~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~~~~~~~~~~~~~~ 84 (103)
T PF00804_consen 5 FFDEVQEIREDIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTDEIKQLFQKIKKRLKQLSKDNEDSEGEEPSSNE 84 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT--SHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcHH
Confidence 9999999999999999999999999985 455544467999999999999999999999999999862 23556
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 024426 90 NQNKKVEDAKLARDFQTVL 108 (268)
Q Consensus 90 ~~~~k~~~~~L~~~f~~~l 108 (268)
.|++++++..|+++|+++|
T Consensus 85 ~ri~~nq~~~L~~kf~~~m 103 (103)
T PF00804_consen 85 VRIRKNQVQALSKKFQEVM 103 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHC
Confidence 8999999999999999986
No 15
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.55 E-value=1.6e-06 Score=75.66 Aligned_cols=85 Identities=18% Similarity=0.239 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Q 024426 178 IEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQLAKASKNVKSRSSWCWWVLAIIVV 257 (268)
Q Consensus 178 i~eR~~eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a~~~l~~a~~~qk~~rk~~~~~~i~~~i 257 (268)
..+--+++++|++.+.|+..|-.-++.=|-+|...||.|-+++..+..|++.|++++++|.+...+.|+|+.++++|+.+
T Consensus 227 ~n~~~devrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d~~~~~teNIk~gNe~irka~~~~~~~r~~~lf~llvlsf 306 (316)
T KOG3894|consen 227 LNELLDEVRQIEKRLVEISALQDIFSEHVLQQDQNIDLIHDLQSGATENIKDGNEEIRKAKRNNGGLRVFLLFFLLVLSF 306 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHhcccchhHHHHHHHHHHH
Confidence 66677999999999999999999999999999999999999999999999999999999999988888877666666555
Q ss_pred HHHHH
Q 024426 258 ALVIL 262 (268)
Q Consensus 258 ~~~ii 262 (268)
+++++
T Consensus 307 ~lLFl 311 (316)
T KOG3894|consen 307 SLLFL 311 (316)
T ss_pred HHHHH
Confidence 54443
No 16
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.46 E-value=1.7e-06 Score=64.58 Aligned_cols=85 Identities=18% Similarity=0.301 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHH
Q 024426 179 EEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQLAKASKNVKSRSSWCWWVLAIIVVA 258 (268)
Q Consensus 179 ~eR~~eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a~~~l~~a~~~qk~~rk~~~~~~i~~~i~ 258 (268)
.|-++.+..|.+.|.-|..+--|++..|..|..++|.+++..+++...+.++-..+....+. +.++.+||++++++|+
T Consensus 32 ~ENee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~--sg~~l~~~m~~f~lV~ 109 (118)
T KOG3385|consen 32 RENEEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARR--SGISLLCWMAVFSLVA 109 (118)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHH
Confidence 45567788999999999999999999999999999999999999999999999999888886 7888899888776666
Q ss_pred HHHHHHH
Q 024426 259 LVILLLV 265 (268)
Q Consensus 259 ~~ii~~~ 265 (268)
++|+.++
T Consensus 110 ~fi~~~~ 116 (118)
T KOG3385|consen 110 FFILWVW 116 (118)
T ss_pred HHHhhee
Confidence 6665544
No 17
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=97.94 E-value=0.00042 Score=50.40 Aligned_cols=82 Identities=17% Similarity=0.395 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHH
Q 024426 183 HGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQLAKASKNVKSRSSWCWWVLAIIVVALVIL 262 (268)
Q Consensus 183 ~eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a~~~l~~a~~~qk~~rk~~~~~~i~~~i~~~ii 262 (268)
+.+.++...+.++.++..+=-..+.+-|+-|+.++...+.-......-.+.=.+..+... .++++++++++++++++++
T Consensus 3 dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~-~~~~k~~~i~~~iv~~~~~ 81 (89)
T PF00957_consen 3 DKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMW-WRNYKLYIIIIIIVIIIIL 81 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHhHHhhhhhhhh
Confidence 357788999999999999888888999999999999877766665554444333333322 2333444444333333333
Q ss_pred HHH
Q 024426 263 LLV 265 (268)
Q Consensus 263 ~~~ 265 (268)
+++
T Consensus 82 ~i~ 84 (89)
T PF00957_consen 82 III 84 (89)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 18
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.67 E-value=0.0018 Score=48.85 Aligned_cols=40 Identities=18% Similarity=0.363 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHH
Q 024426 184 GLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESS 223 (268)
Q Consensus 184 eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a 223 (268)
.+.++...+.|+-+|+++==.=|-|=|+-||.+++-.++-
T Consensus 30 k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L 69 (116)
T KOG0860|consen 30 KLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQL 69 (116)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHH
Confidence 4566677788888999988888889999999988754443
No 19
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=97.38 E-value=0.0078 Score=52.39 Aligned_cols=57 Identities=12% Similarity=0.266 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 024426 178 IEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQLAKA 237 (268)
Q Consensus 178 i~eR~~eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a~~~l~~a 237 (268)
.++=-.++-.+.+++.+=...| +..+.+-..+||..+..++.....+..+...|...
T Consensus 165 QE~L~~em~~La~~LK~~s~~~---~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~ 221 (251)
T PF09753_consen 165 QEDLTEEMLSLARQLKENSLAF---SQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEH 221 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334456666666666655554 56899999999999999999999999999888664
No 20
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=97.08 E-value=0.008 Score=50.72 Aligned_cols=82 Identities=21% Similarity=0.272 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Q 024426 178 IEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQLAKASKNVKSRSSWCWWVLAIIVV 257 (268)
Q Consensus 178 i~eR~~eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a~~~l~~a~~~qk~~rk~~~~~~i~~~i 257 (268)
+..=++-+..|.+-..++.++-.+=-.+|.-=...+.+.+.|++.+..++++|.+..++|++ ++.|-|.+|+++|++|
T Consensus 187 ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~AvksaRaaRk--kki~c~gI~~iii~vi 264 (280)
T COG5074 187 IKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKSARAARK--KKIRCYGICFIIIIVI 264 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHHHHHHHh--cceehhhhHHHHHHHH
Confidence 33334445555555555555556666667666667777778888888888888777544443 4456665555554444
Q ss_pred HHHH
Q 024426 258 ALVI 261 (268)
Q Consensus 258 ~~~i 261 (268)
+.++
T Consensus 265 v~vv 268 (280)
T COG5074 265 VVVV 268 (280)
T ss_pred HHHH
Confidence 4444
No 21
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.01 E-value=0.21 Score=43.76 Aligned_cols=86 Identities=16% Similarity=0.137 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Q 024426 176 AIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQLAKASKNVKSRSSWCWWVLAII 255 (268)
Q Consensus 176 ~~i~eR~~eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a~~~l~~a~~~qk~~rk~~~~~~i~~ 255 (268)
..|++=+.+|..+..-..+|..|-.+=+.+|..=.+-|++-..||+.+..++.+|...=.++++.. --..|++++++
T Consensus 180 q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~~~k~~---~~ll~v~~~v~ 256 (269)
T KOG0811|consen 180 QAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQRKARKKK---CILLLVGGPVG 256 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch---hhhhHHHHHHH
Confidence 458888999999999999999999999999999999999999999999999999998876665433 33345555555
Q ss_pred HHHHHHHHH
Q 024426 256 VVALVILLL 264 (268)
Q Consensus 256 ~i~~~ii~~ 264 (268)
+|++++++.
T Consensus 257 lii~l~i~~ 265 (269)
T KOG0811|consen 257 LIIGLIIAG 265 (269)
T ss_pred HHHHHHHHH
Confidence 555555544
No 22
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=96.39 E-value=0.58 Score=40.73 Aligned_cols=73 Identities=16% Similarity=0.243 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Q 024426 177 IIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQLAKASKNVKSRSSWCWWVLA 253 (268)
Q Consensus 177 ~i~eR~~eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a~~~l~~a~~~qk~~rk~~~~~~i 253 (268)
.|..=++.|.++..--.+|..+-.+=+.+|.-=..-|+++-+|+.+|...+.+|..+-+++ ++.|.+..++++
T Consensus 196 eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrrt----~k~~~~~Llil~ 268 (283)
T COG5325 196 EIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRRT----KKCRFYLLLILL 268 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhhh----ccchhhHHHHHH
Confidence 3666777888888888888888888888888888888888888888888888877665443 334555544433
No 23
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.12 E-value=0.16 Score=45.28 Aligned_cols=91 Identities=12% Similarity=0.306 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcc----chhHHHHHH
Q 024426 178 IEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQLAKASKNVKSR----SSWCWWVLA 253 (268)
Q Consensus 178 i~eR~~eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a~~~l~~a~~~qk~~----rk~~~~~~i 253 (268)
...=..||+.=...|.+|-.-..+|+.|..+=..+|..=...|+.-..+|.+|.....+|...-+++ +|-.+|.++
T Consensus 194 ~~~~l~Eiq~Rh~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkkaRK~k~i 273 (297)
T KOG0810|consen 194 AKQTLAEIQERHDEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKARKWKII 273 (297)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhceee
Confidence 5556677888888999999999999999999999999999999999999999999999998887754 344678888
Q ss_pred HHHHHHHHHHHHHhC
Q 024426 254 IIVVALVILLLVFIL 268 (268)
Q Consensus 254 ~~~i~~~ii~~~l~~ 268 (268)
|++++++++++++++
T Consensus 274 ~ii~~iii~~v~v~~ 288 (297)
T KOG0810|consen 274 IIIILIIIIVVLVVV 288 (297)
T ss_pred eehHHHHHHHHHhhh
Confidence 877777777776653
No 24
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.81 E-value=0.95 Score=37.97 Aligned_cols=59 Identities=12% Similarity=0.171 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhh
Q 024426 184 GLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQLAKASKNVK 242 (268)
Q Consensus 184 eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a~~~l~~a~~~qk 242 (268)
-|+.=.+-..|--+|=.+|-.=.+.|-+.|.+--.-.-.+..++.++.+-|....++--
T Consensus 136 rl~ds~Ria~ETEqIG~~IL~dL~~QRe~L~rar~rL~~td~~lgkS~kiL~tM~RR~~ 194 (220)
T KOG1666|consen 136 RLKDSQRIALETEQIGSEILEDLHGQREQLERARERLRETDANLGKSRKILTTMTRRLI 194 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHH
Confidence 34444455566666666777777889999999888888888888888888877776543
No 25
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.76 E-value=0.055 Score=47.43 Aligned_cols=57 Identities=16% Similarity=0.277 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 024426 180 EREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQLAK 236 (268)
Q Consensus 180 eR~~eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a~~~l~~ 236 (268)
+-+..+.+|-..+..|..|-.||+..|+.|.+.||+|+++++.....|+.+++.+++
T Consensus 215 eiD~NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~~~n~R~~k 271 (273)
T KOG3065|consen 215 EIDENLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVDKANKRAKK 271 (273)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHHHHHHHHHh
Confidence 456788999999999999999999999999999999999999999999999887754
No 26
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=95.16 E-value=0.8 Score=32.96 Aligned_cols=15 Identities=33% Similarity=0.552 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q 024426 178 IEEREHGLREIEEQI 192 (268)
Q Consensus 178 i~eR~~eI~~Ie~~i 192 (268)
+-+|.+.+..|+...
T Consensus 26 ll~Rge~L~~L~~kt 40 (89)
T PF00957_consen 26 LLERGEKLEELEDKT 40 (89)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHcCchHHHHHHHH
Confidence 344444444444433
No 27
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=94.14 E-value=0.11 Score=34.69 Aligned_cols=31 Identities=13% Similarity=0.252 Sum_probs=16.4
Q ss_pred HHHhhccchhHHHHHHHHHHHHHHHHHHHhC
Q 024426 238 SKNVKSRSSWCWWVLAIIVVALVILLLVFIL 268 (268)
Q Consensus 238 ~~~qk~~rk~~~~~~i~~~i~~~ii~~~l~~ 268 (268)
.+.||+-+|..++++++++++++|+++..+|
T Consensus 29 ~k~qk~~~~~~~i~~~~~i~~l~v~~~~~~~ 59 (59)
T PF09889_consen 29 RKRQKRMRKTQYIFFGIFILFLAVWIFMTFF 59 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3445555555666665555555555554443
No 28
>PF15605 Toxin_52: Putative toxin 52
Probab=93.14 E-value=1.2 Score=32.84 Aligned_cols=70 Identities=10% Similarity=0.061 Sum_probs=51.5
Q ss_pred ccccCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024426 5 DLQNGSRSSPSSSSKSPSQAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLHNTRQRILQLVKDTSAKL 77 (268)
Q Consensus 5 ~~~~~~~~~~~~~f~~~~~~i~~~i~~i~~~v~~l~~~~~~l~t~~d~~~~~~~i~~l~~~i~~l~~~~~~~l 77 (268)
||++.+.+-|+|++++.++++++....+......|+.. |+.|.-+...++-+..--.+.+..++++...+
T Consensus 32 dl~G~pVpKp~GgywdHlqEm~da~~GL~n~~~~le~~---L~np~l~~~~r~~lq~~l~ea~~~l~kiE~~~ 101 (103)
T PF15605_consen 32 DLQGNPVPKPDGGYWDHLQEMQDAYRGLVNRKRTLEGS---LKNPNLSGRTRELLQSKLNEANNYLDKIEDFF 101 (103)
T ss_pred HHcCCcccCCCCCccHHHHHHHHHHHHHHHHHHHHHHh---cCCCCCchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67777776677778899999999998888876666654 77777566666666666666677776666554
No 29
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.63 E-value=9.1 Score=33.82 Aligned_cols=90 Identities=20% Similarity=0.286 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhc---c-chhHHHHHH
Q 024426 178 IEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQLAKASKNVKS---R-SSWCWWVLA 253 (268)
Q Consensus 178 i~eR~~eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a~~~l~~a~~~qk~---~-rk~~~~~~i 253 (268)
++.-++...+=|+-|..|.+=..||+.+..+=|.+|-.=-.-|+.-.-|+++....+..|.+-=-| + |+-+-|.++
T Consensus 206 ~e~~~~~~~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~yQk~~~k~~~i 285 (305)
T KOG0809|consen 206 FENNEEVVREREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAERYQKRNKKMKVI 285 (305)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHHHHHhcCCceEeh
Confidence 444444455555555555555555555555555555554455555555555555555555543211 1 122334455
Q ss_pred HHHHHHHHHHHHHh
Q 024426 254 IIVVALVILLLVFI 267 (268)
Q Consensus 254 ~~~i~~~ii~~~l~ 267 (268)
+++++++|++++++
T Consensus 286 ~~L~l~ii~llvll 299 (305)
T KOG0809|consen 286 LMLTLLIIALLVLL 299 (305)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555555543
No 30
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.43 E-value=1.7 Score=32.90 Aligned_cols=18 Identities=28% Similarity=0.462 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024426 178 IEEREHGLREIEEQIGQA 195 (268)
Q Consensus 178 i~eR~~eI~~Ie~~i~el 195 (268)
+-||.+.+..|+.--..|
T Consensus 52 VlER~ekL~~L~drad~L 69 (116)
T KOG0860|consen 52 VLERGEKLDELDDRADQL 69 (116)
T ss_pred HHHhcchHHHHHHHHHHH
Confidence 455655555554444333
No 31
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=89.59 E-value=6.9 Score=33.91 Aligned_cols=72 Identities=7% Similarity=0.189 Sum_probs=31.5
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhHHHH----HHHhhHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Q 024426 181 REHGLR-EIEEQIGQANEIFKDLAVLVHEQGVVID----DISSNIESSAATTTHARVQLAKASKNVKSRSSWCWWVLAII 255 (268)
Q Consensus 181 R~~eI~-~Ie~~i~el~~iF~dLa~lV~eQge~lD----~Ie~Nv~~a~~~v~~a~~~l~~a~~~qk~~rk~~~~~~i~~ 255 (268)
+|+.++ .|...|..|..-.++=+... +..|. .++.-...+..|...-..+=.+...|.+++.+|+.|+++++
T Consensus 160 ~~~~~QE~L~~em~~La~~LK~~s~~~---~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~~~~~~~~~i~~ 236 (251)
T PF09753_consen 160 HHRNLQEDLTEEMLSLARQLKENSLAF---SQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKSWGCWTWLMIFV 236 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 344443 56666666655555544332 22222 23333333444444444444445555544444433333333
No 32
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=88.85 E-value=7.1 Score=28.24 Aligned_cols=43 Identities=12% Similarity=0.195 Sum_probs=23.8
Q ss_pred HHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhccchhHH
Q 024426 207 HEQGVVIDDISSNIESSAATTTHARVQLAKASKNVKSRSSWCW 249 (268)
Q Consensus 207 ~eQge~lD~Ie~Nv~~a~~~v~~a~~~l~~a~~~qk~~rk~~~ 249 (268)
.+|-..|....+-.......+..+.+=+.+..+..+.-|...|
T Consensus 32 ~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~ 74 (92)
T PF03908_consen 32 EESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIF 74 (92)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4444455555555555555666776666666665555554333
No 33
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=88.84 E-value=7.3 Score=28.34 Aligned_cols=81 Identities=12% Similarity=0.164 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH--hhccc-hhHHHHHHHHHH
Q 024426 181 REHGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQLAKASKN--VKSRS-SWCWWVLAIIVV 257 (268)
Q Consensus 181 R~~eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a~~~l~~a~~~--qk~~r-k~~~~~~i~~~i 257 (268)
-+..|..||..-..+..=+.++-.=++.|..+.+..+.+++.-... +++.+-.+. .|.-| -|+|++.++..|
T Consensus 9 ~e~Ri~rLEendk~i~~~L~~Ik~gq~~qe~v~~kld~tlD~i~re-----Re~dee~k~~n~Knir~~KmwilGlvgTi 83 (98)
T PF11166_consen 9 HEWRIRRLEENDKTIFNKLDEIKDGQHDQELVNQKLDRTLDEINRE-----REEDEENKKKNDKNIRDIKMWILGLVGTI 83 (98)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhHhhHHHHHHHHHhhHHHHHHH-----HHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3456777888777777777777778889999999999888884432 222222221 12123 467888777766
Q ss_pred HHHHHHHHH
Q 024426 258 ALVILLLVF 266 (268)
Q Consensus 258 ~~~ii~~~l 266 (268)
+..+++.+|
T Consensus 84 ~gsliia~l 92 (98)
T PF11166_consen 84 FGSLIIALL 92 (98)
T ss_pred HHHHHHHHH
Confidence 665555443
No 34
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=88.76 E-value=14 Score=31.40 Aligned_cols=51 Identities=12% Similarity=0.221 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 024426 183 HGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQLAK 236 (268)
Q Consensus 183 ~eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a~~~l~~ 236 (268)
+++..+.++..+-.--|++ -+.+-...+-.-+.-++.....+.....-+++
T Consensus 158 esll~LArslKtnalAfqs---alkeDnQvl~~~~k~~D~N~~~L~~~Serve~ 208 (244)
T KOG2678|consen 158 ESLLKLARSLKTNALAFQS---ALKEDNQVLGAAEKGIDVNSQGLMDVSERVEK 208 (244)
T ss_pred HHHHHHHHHHHHhHHHHHH---HHHhhHHHHHHHHHHHhHHHHHHHhhhHHHHH
Confidence 3455555554444433433 34444444545444455555545544444443
No 35
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=87.93 E-value=0.56 Score=33.20 Aligned_cols=18 Identities=28% Similarity=0.861 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHhC
Q 024426 251 VLAIIVVALVILLLVFIL 268 (268)
Q Consensus 251 ~~i~~~i~~~ii~~~l~~ 268 (268)
++.|++++++|+++|++|
T Consensus 27 lMtILivLVIIiLlImlf 44 (85)
T PF10717_consen 27 LMTILIVLVIIILLIMLF 44 (85)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555666666666665
No 36
>PHA02844 putative transmembrane protein; Provisional
Probab=87.55 E-value=0.8 Score=31.65 Aligned_cols=24 Identities=33% Similarity=0.517 Sum_probs=11.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHh
Q 024426 244 RSSWCWWVLAIIVVALVILLLVFI 267 (268)
Q Consensus 244 ~rk~~~~~~i~~~i~~~ii~~~l~ 267 (268)
+..|++++++++.+++++++++++
T Consensus 45 ~~~~~~~ii~i~~v~~~~~~~flY 68 (75)
T PHA02844 45 SSSTKIWILTIIFVVFATFLTFLY 68 (75)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444454555555555543
No 37
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=87.26 E-value=37 Score=34.69 Aligned_cols=55 Identities=11% Similarity=0.148 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 024426 184 GLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQLAKASKN 240 (268)
Q Consensus 184 eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a~~~l~~a~~~ 240 (268)
-+..+.+.+..+..-+.+++.-+-.+ +...+..-...+..++........++..|
T Consensus 358 ~v~~ik~~l~~~~~~i~~~a~~i~~~--~~~~~s~~~~~~~~~~~~~~~~~~~y~~y 412 (806)
T PF05478_consen 358 VVPPIKRDLDSIGKQIRSQAKQIPNQ--IDSNISDILNNTERSSRSFEDEYEKYDSY 412 (806)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence 33444455555555555555555555 44455555556666666656666555555
No 38
>PHA02650 hypothetical protein; Provisional
Probab=87.26 E-value=0.78 Score=32.08 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=12.6
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHh
Q 024426 243 SRSSWCWWVLAIIVVALVILLLVFI 267 (268)
Q Consensus 243 ~~rk~~~~~~i~~~i~~~ii~~~l~ 267 (268)
++..|++++++++.+++++++++++
T Consensus 45 ~~~~~~~~ii~i~~v~i~~l~~flY 69 (81)
T PHA02650 45 SWFNGQNFIFLIFSLIIVALFSFFV 69 (81)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555543
No 39
>PHA02975 hypothetical protein; Provisional
Probab=86.14 E-value=0.92 Score=30.85 Aligned_cols=25 Identities=12% Similarity=0.178 Sum_probs=13.1
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHh
Q 024426 243 SRSSWCWWVLAIIVVALVILLLVFI 267 (268)
Q Consensus 243 ~~rk~~~~~~i~~~i~~~ii~~~l~ 267 (268)
+++.|++++++++.+++++++++++
T Consensus 40 ~~~~~~~~ii~i~~v~~~~~~~flY 64 (69)
T PHA02975 40 KSSLSIILIIFIIFITCIAVFTFLY 64 (69)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555543
No 40
>PHA03054 IMV membrane protein; Provisional
Probab=85.73 E-value=1.1 Score=30.65 Aligned_cols=24 Identities=21% Similarity=0.735 Sum_probs=10.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHh
Q 024426 244 RSSWCWWVLAIIVVALVILLLVFI 267 (268)
Q Consensus 244 ~rk~~~~~~i~~~i~~~ii~~~l~ 267 (268)
++.|++++++++.+++++++++++
T Consensus 45 ~~~~~~~ii~l~~v~~~~l~~flY 68 (72)
T PHA03054 45 CWGWYWLIIIFFIVLILLLLIYLY 68 (72)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444445555544443
No 41
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.45 E-value=21 Score=30.11 Aligned_cols=53 Identities=11% Similarity=0.102 Sum_probs=34.2
Q ss_pred HHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHH
Q 024426 206 VHEQGVVIDDISSNIESSAATTTHARVQLAKASKNVKSRSSWCWWVLAIIVVA 258 (268)
Q Consensus 206 V~eQge~lD~Ie~Nv~~a~~~v~~a~~~l~~a~~~qk~~rk~~~~~~i~~~i~ 258 (268)
+.+|+..|-.+-.-+-....-+.=.+.-+..-.++-+.-++.+||-+++++|+
T Consensus 152 l~~Q~~~L~~~~~ki~~~~ntLGlSn~ti~lIeRR~~~Dk~iF~~G~i~~~v~ 204 (213)
T KOG3251|consen 152 LVEQRLTLKGTQKKILDILNTLGLSNQTIRLIERRVREDKIIFYGGVILTLVI 204 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 46788888887777777777777777777777776665554444444333333
No 42
>PHA02819 hypothetical protein; Provisional
Probab=85.26 E-value=1.2 Score=30.50 Aligned_cols=22 Identities=14% Similarity=0.591 Sum_probs=9.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHH
Q 024426 245 SSWCWWVLAIIVVALVILLLVF 266 (268)
Q Consensus 245 rk~~~~~~i~~~i~~~ii~~~l 266 (268)
+.|++++++++.++++++++++
T Consensus 44 ~~~~~~ii~l~~~~~~~~~~fl 65 (71)
T PHA02819 44 FLRYYLIIGLVTIVFVIIFIIF 65 (71)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444
No 43
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=82.39 E-value=3.8 Score=27.13 Aligned_cols=25 Identities=12% Similarity=0.052 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHh-h-ccchhHHHHH
Q 024426 228 THARVQLAKASKNV-K-SRSSWCWWVL 252 (268)
Q Consensus 228 ~~a~~~l~~a~~~q-k-~~rk~~~~~~ 252 (268)
+.|..-|...-++| + +.||+.|.+.
T Consensus 9 ETA~~FL~RvGr~q~~~r~RrRrc~~~ 35 (60)
T PF06072_consen 9 ETATEFLRRVGRQQHASRRRRRRCRLA 35 (60)
T ss_pred ccHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 44555666666666 3 3344445433
No 44
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=82.24 E-value=14 Score=25.42 Aligned_cols=42 Identities=17% Similarity=0.314 Sum_probs=22.4
Q ss_pred hhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Q 024426 209 QGVVIDDISSNIESSAATTTHARVQLAKASKNVKSRSSWCWWVLAI 254 (268)
Q Consensus 209 Qge~lD~Ie~Nv~~a~~~v~~a~~~l~~a~~~qk~~rk~~~~~~i~ 254 (268)
-.+-++.+|.+.......+.....+|.+-.. +.||.|-+++.
T Consensus 18 ~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~----n~kW~~r~iiG 59 (71)
T PF10779_consen 18 HEERIDKLEKRDAANEKDIKNLNKQLEKIKS----NTKWIWRTIIG 59 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 3444555555555555555666666655444 45555554433
No 45
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=82.15 E-value=12 Score=24.93 Aligned_cols=57 Identities=11% Similarity=0.134 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 024426 184 GLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQLAKASKN 240 (268)
Q Consensus 184 eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a~~~l~~a~~~ 240 (268)
-+..-.+.+.|..++-.+...-...|++.|.++...+..+..++..+..-|....++
T Consensus 9 ~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~rR 65 (66)
T PF12352_consen 9 SLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRISRR 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcc
Confidence 455556667777777888888999999999999999999999999999888776553
No 46
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.49 E-value=32 Score=29.20 Aligned_cols=34 Identities=21% Similarity=0.213 Sum_probs=24.5
Q ss_pred HHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 024426 204 VLVHEQGVVIDDISSNIESSAATTTHARVQLAKA 237 (268)
Q Consensus 204 ~lV~eQge~lD~Ie~Nv~~a~~~v~~a~~~l~~a 237 (268)
.-.+.|+.++-.|..-|.++....=.-+.=|.+-
T Consensus 170 e~l~~Qrs~l~~i~~k~~~~a~r~P~IN~Ll~kI 203 (231)
T KOG3208|consen 170 ENLHSQRSVLGGINNKVNNIANRFPAINQLLQKI 203 (231)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHH
Confidence 3457899999999999988888776544444333
No 47
>PF00523 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR000776 The fusion glycoproteins from this family are found in ssRNA negative-strand viruses. This protein directs fusion of viral and cellular membranes, resulting in viral penetration, and can direct fusion of infected cells with adjoining cells, resulting in the formation of syncytia. The mature form is a dimer of polypeptides F1 and F2 linked by a disulphide bond [].; GO: 0006948 induction by virus of host cell-cell fusion; PDB: 2FYZ_D 3MAW_B 4DAG_A 1G5G_D 1SVF_A 2B9B_A 1G2C_M 3RRT_A 3RRR_D 3RKI_A ....
Probab=80.90 E-value=2.6 Score=40.26 Aligned_cols=29 Identities=24% Similarity=0.260 Sum_probs=14.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 024426 216 ISSNIESSAATTTHARVQLAKASKNVKSR 244 (268)
Q Consensus 216 Ie~Nv~~a~~~v~~a~~~l~~a~~~qk~~ 244 (268)
|..++.++...+++|...|.++.+.=.+.
T Consensus 436 IS~eL~~vn~sL~~A~~~L~~Sn~iL~~v 464 (490)
T PF00523_consen 436 ISSELGQVNNSLNNAKDLLDKSNQILDSV 464 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555555555555555555544433
No 48
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=78.51 E-value=9.9 Score=27.76 Aligned_cols=59 Identities=10% Similarity=0.166 Sum_probs=34.7
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024426 17 SSKSPSQAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSE 82 (268)
Q Consensus 17 ~f~~~~~~i~~~i~~i~~~v~~l~~~~~~l~t~~d~~~~~~~i~~l~~~i~~l~~~~~~~l~~l~~ 82 (268)
||+...++|...|..++........+...-. -...+..+..++...+..+...|..|..
T Consensus 2 PF~~v~~ev~~sl~~l~~~~~~~~~~~~~~~-------~~~e~~~~~~eL~~~l~~ie~~L~DL~~ 60 (97)
T PF09177_consen 2 PFFVVKDEVQSSLDRLESLYRRWQRLRSDTS-------SSEELKWLKRELRNALQSIEWDLEDLEE 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHCC--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhcccCC-------CcHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777888888888888776666655443322 1233444445555555555555555554
No 49
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=77.43 E-value=1.5 Score=31.30 Aligned_cols=32 Identities=13% Similarity=0.160 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Q 024426 224 AATTTHARVQLAKASKNVKSRSSWCWWVLAII 255 (268)
Q Consensus 224 ~~~v~~a~~~l~~a~~~qk~~rk~~~~~~i~~ 255 (268)
+.+-.....+...|.++.+++|++.++-+++.
T Consensus 43 kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~g 74 (82)
T PF04505_consen 43 KVRSRYAAGDYEGARRASRKAKKWSIIAIIIG 74 (82)
T ss_pred hhHHHHHCCCHHHHHHHHHHhHHHHHHHHHHH
Confidence 33444455577888888888887665544443
No 50
>PHA02692 hypothetical protein; Provisional
Probab=77.42 E-value=3.2 Score=28.40 Aligned_cols=13 Identities=31% Similarity=0.475 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHH
Q 024426 254 IIVVALVILLLVF 266 (268)
Q Consensus 254 ~~~i~~~ii~~~l 266 (268)
++.++++++++++
T Consensus 53 ~~~~~~~vll~fl 65 (70)
T PHA02692 53 LIAAAIGVLLCFH 65 (70)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444444
No 51
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.76 E-value=6.2 Score=32.83 Aligned_cols=43 Identities=12% Similarity=0.219 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHH
Q 024426 184 GLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTH 229 (268)
Q Consensus 184 eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~ 229 (268)
.+.++...|.|+..++.+==.-|-+-||- ||-=|+++..-..+
T Consensus 126 ~lskvkaqv~evk~vM~eNIekvldRGek---iELLVdKTenl~~~ 168 (217)
T KOG0859|consen 126 KLAKVKAQVTEVKGVMMENIEKVLDRGEK---IELLVDKTENLRSK 168 (217)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCe---EEeeechhhhhhhh
Confidence 45556666777776666555555555552 23334444443333
No 52
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=76.11 E-value=9.5 Score=31.00 Aligned_cols=33 Identities=27% Similarity=0.234 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhhccchhHHHHHHHHHHHHHHHH
Q 024426 231 RVQLAKASKNVKSRSSWCWWVLAIIVVALVILL 263 (268)
Q Consensus 231 ~~~l~~a~~~qk~~rk~~~~~~i~~~i~~~ii~ 263 (268)
..++..|.+-.+++.|.+-++.+++++.++|++
T Consensus 137 ~~~~~~a~~~~~~~~Klyr~LGvl~G~~lvIlL 169 (170)
T PF09548_consen 137 EQQLEEAREEAKKKGKLYRSLGVLGGLFLVILL 169 (170)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 345556666666666655566555554444443
No 53
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=75.66 E-value=3.7 Score=29.35 Aligned_cols=8 Identities=25% Similarity=0.135 Sum_probs=3.9
Q ss_pred HHHHHHHH
Q 024426 232 VQLAKASK 239 (268)
Q Consensus 232 ~~l~~a~~ 239 (268)
.+|.+-..
T Consensus 20 DQL~qlVs 27 (84)
T PF06143_consen 20 DQLEQLVS 27 (84)
T ss_pred HHHHHHHH
Confidence 45555553
No 54
>PRK08307 stage III sporulation protein SpoAB; Provisional
Probab=75.00 E-value=11 Score=30.81 Aligned_cols=33 Identities=18% Similarity=0.177 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhhccchhHHHHHHHHHHHHHHHH
Q 024426 231 RVQLAKASKNVKSRSSWCWWVLAIIVVALVILL 263 (268)
Q Consensus 231 ~~~l~~a~~~qk~~rk~~~~~~i~~~i~~~ii~ 263 (268)
..++..|...++++.|..-++.+++++.++|++
T Consensus 138 ~~~~~~a~~~~~k~~Kmy~~LGvl~Gl~lvIlL 170 (171)
T PRK08307 138 EREEEEAEEEQKKNEKMYKYLGFLAGLLIVILL 170 (171)
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh
Confidence 345566777777767665566555555444443
No 55
>TIGR02833 spore_III_AB stage III sporulation protein AB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage III sporulation protein AB.
Probab=74.76 E-value=11 Score=30.72 Aligned_cols=33 Identities=21% Similarity=0.330 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhhccchhHHHHHHHHHHHHHHHH
Q 024426 231 RVQLAKASKNVKSRSSWCWWVLAIIVVALVILL 263 (268)
Q Consensus 231 ~~~l~~a~~~qk~~rk~~~~~~i~~~i~~~ii~ 263 (268)
..++..|...++++.|..-++.+++++.++|++
T Consensus 137 ~~~~~~a~~~~~k~~Kmy~~LGvl~Gl~lvIll 169 (170)
T TIGR02833 137 ERQLTEAEDEQKKNEKMYRYLGVLVGLMIVLLL 169 (170)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 345556667677766665566555554444443
No 56
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=74.74 E-value=5 Score=27.75 Aligned_cols=8 Identities=25% Similarity=0.609 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 024426 258 ALVILLLV 265 (268)
Q Consensus 258 ~~~ii~~~ 265 (268)
++++++++
T Consensus 59 ~ii~~l~f 66 (72)
T PF12575_consen 59 LIIVLLTF 66 (72)
T ss_pred HHHHHHHH
Confidence 33333333
No 57
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=74.73 E-value=6.3 Score=26.23 Aligned_cols=32 Identities=9% Similarity=0.272 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhhccchhHHHHHHHHHHHHHHH
Q 024426 231 RVQLAKASKNVKSRSSWCWWVLAIIVVALVIL 262 (268)
Q Consensus 231 ~~~l~~a~~~qk~~rk~~~~~~i~~~i~~~ii 262 (268)
.+...+..+..++.+..++.++++++++.+++
T Consensus 25 ~~~~~k~qk~~~~~~~i~~~~~i~~l~v~~~~ 56 (59)
T PF09889_consen 25 REEYRKRQKRMRKTQYIFFGIFILFLAVWIFM 56 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666655544444444
No 58
>PHA02819 hypothetical protein; Provisional
Probab=74.64 E-value=3.2 Score=28.45 Aligned_cols=29 Identities=17% Similarity=0.300 Sum_probs=20.6
Q ss_pred HhhccchhHHHHHHHHHHHHHHHHHHHhC
Q 024426 240 NVKSRSSWCWWVLAIIVVALVILLLVFIL 268 (268)
Q Consensus 240 ~qk~~rk~~~~~~i~~~i~~~ii~~~l~~ 268 (268)
+.++++++.-+.++|+++++++++++++|
T Consensus 36 ~~~~~~~~~~~~~~ii~l~~~~~~~~~~f 64 (71)
T PHA02819 36 YNKKTKKSFLRYYLIIGLVTIVFVIIFII 64 (71)
T ss_pred CcccccCChhHHHHHHHHHHHHHHHHHHH
Confidence 45566777778888888777777777654
No 59
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=74.41 E-value=3.1 Score=28.72 Aligned_cols=17 Identities=18% Similarity=0.622 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHhC
Q 024426 252 LAIIVVALVILLLVFIL 268 (268)
Q Consensus 252 ~i~~~i~~~ii~~~l~~ 268 (268)
++++++++++++++++|
T Consensus 50 ~~ii~ii~v~ii~~l~f 66 (72)
T PF12575_consen 50 ILIISIIFVLIIVLLTF 66 (72)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44445666666666554
No 60
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.29 E-value=22 Score=30.60 Aligned_cols=19 Identities=32% Similarity=0.466 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHhC
Q 024426 250 WVLAIIVVALVILLLVFIL 268 (268)
Q Consensus 250 ~~~i~~~i~~~ii~~~l~~ 268 (268)
|+++++++++++++++++|
T Consensus 215 ~~~~il~l~~~~~lvv~i~ 233 (235)
T KOG3202|consen 215 QWCAILLLVGLLLLVVIIF 233 (235)
T ss_pred chhHHHHHHHHHHHHHHHh
Confidence 5677777777777777775
No 61
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.06 E-value=51 Score=29.06 Aligned_cols=48 Identities=17% Similarity=0.195 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 024426 192 IGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQLAKASK 239 (268)
Q Consensus 192 i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a~~~l~~a~~ 239 (268)
+.|....-.-...+..+||++|++||.|+.........|.+.|..-..
T Consensus 88 ~~e~~~~g~~Tl~~L~~Q~eQL~rte~~lD~i~~d~~~~er~l~~l~~ 135 (273)
T KOG3065|consen 88 AEESREDGSRTLVMLSEQGEQLERTEKNLDDIKVDLKRAERNLTELKG 135 (273)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 344445555667788999999999999999999999999888855443
No 62
>PF14992 TMCO5: TMCO5 family
Probab=73.63 E-value=64 Score=28.50 Aligned_cols=49 Identities=12% Similarity=0.176 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHH
Q 024426 178 IEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAAT 226 (268)
Q Consensus 178 i~eR~~eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~ 226 (268)
....+++|.+++.+...++++=.|=+.-+..=-+.+.+||.-.+...-+
T Consensus 125 ~~~qE~ei~kve~d~~~v~~l~eDq~~~i~klkE~L~rmE~ekE~~lLe 173 (280)
T PF14992_consen 125 CASQEKEIAKVEDDYQQVHQLCEDQANEIKKLKEKLRRMEEEKEMLLLE 173 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788888888888888888888888887777778888765544433
No 63
>PHA02844 putative transmembrane protein; Provisional
Probab=73.06 E-value=3.6 Score=28.48 Aligned_cols=29 Identities=10% Similarity=0.085 Sum_probs=19.7
Q ss_pred HhhccchhHHHHHHHHHHHHHHHHHHHhC
Q 024426 240 NVKSRSSWCWWVLAIIVVALVILLLVFIL 268 (268)
Q Consensus 240 ~qk~~rk~~~~~~i~~~i~~~ii~~~l~~ 268 (268)
+.++++++.-+..+++++++++++++++|
T Consensus 38 ~~~~~~~~~~~~~~ii~i~~v~~~~~~~f 66 (75)
T PHA02844 38 VNKNNVCSSSTKIWILTIIFVVFATFLTF 66 (75)
T ss_pred ccccccCChhHHHHHHHHHHHHHHHHHHH
Confidence 44455666777888877777777776654
No 64
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=71.66 E-value=23 Score=22.54 Aligned_cols=56 Identities=18% Similarity=0.326 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhh
Q 024426 187 EIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQLAKASKNVK 242 (268)
Q Consensus 187 ~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a~~~l~~a~~~qk 242 (268)
+-.+.+..|.....+|..|..+=|.+|..=..-++....++..+...+..|.+.-+
T Consensus 3 e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l~ 58 (60)
T cd00193 3 ERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLK 58 (60)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567777888888888888888888887777788888888888888877776543
No 65
>PHA02650 hypothetical protein; Provisional
Probab=68.04 E-value=5.2 Score=28.04 Aligned_cols=26 Identities=19% Similarity=0.307 Sum_probs=17.3
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhC
Q 024426 243 SRSSWCWWVLAIIVVALVILLLVFIL 268 (268)
Q Consensus 243 ~~rk~~~~~~i~~~i~~~ii~~~l~~ 268 (268)
+.+++.-+.++|+++++++++++++|
T Consensus 42 ~~~~~~~~~~~ii~i~~v~i~~l~~f 67 (81)
T PHA02650 42 KSVSWFNGQNFIFLIFSLIIVALFSF 67 (81)
T ss_pred cccCCchHHHHHHHHHHHHHHHHHHH
Confidence 44556667777877777777666654
No 66
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=67.30 E-value=37 Score=23.15 Aligned_cols=48 Identities=17% Similarity=0.246 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHH
Q 024426 184 GLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHAR 231 (268)
Q Consensus 184 eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a~ 231 (268)
.|..||..+.-.-....+|+..|..|...||..+..+......+....
T Consensus 5 Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 5 RIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456666667777777777777888888888888888777777666543
No 67
>PHA03054 IMV membrane protein; Provisional
Probab=66.26 E-value=6.7 Score=26.88 Aligned_cols=26 Identities=27% Similarity=0.575 Sum_probs=17.1
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhC
Q 024426 243 SRSSWCWWVLAIIVVALVILLLVFIL 268 (268)
Q Consensus 243 ~~rk~~~~~~i~~~i~~~ii~~~l~~ 268 (268)
+++++.-+.++|+++++++++++++|
T Consensus 41 ~~~~~~~~~~~ii~l~~v~~~~l~~f 66 (72)
T PHA03054 41 NNTGCWGWYWLIIIFFIVLILLLLIY 66 (72)
T ss_pred cccCCchHHHHHHHHHHHHHHHHHHH
Confidence 34555667777877777777666654
No 68
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=65.65 E-value=0.32 Score=34.51 Aligned_cols=15 Identities=13% Similarity=0.833 Sum_probs=2.3
Q ss_pred hhccchhHHHHHHHH
Q 024426 241 VKSRSSWCWWVLAII 255 (268)
Q Consensus 241 qk~~rk~~~~~~i~~ 255 (268)
.++.|.|.|+|+-++
T Consensus 61 ~rkKrrwlwLlikl~ 75 (81)
T PF14812_consen 61 PRKKRRWLWLLIKLF 75 (81)
T ss_dssp ----------TTTTH
T ss_pred ccccchhHHHHHHHH
Confidence 455566655554443
No 69
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=64.97 E-value=8.2 Score=27.59 Aligned_cols=15 Identities=33% Similarity=0.638 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q 024426 249 WWVLAIIVVALVILL 263 (268)
Q Consensus 249 ~~~~i~~~i~~~ii~ 263 (268)
||++++++++++|++
T Consensus 41 c~~lVfVii~lFi~l 55 (84)
T PF06143_consen 41 CCFLVFVIIVLFILL 55 (84)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444333333333333
No 70
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=64.85 E-value=39 Score=25.18 Aligned_cols=42 Identities=12% Similarity=0.162 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHH
Q 024426 21 PSQAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLHNT 62 (268)
Q Consensus 21 ~~~~i~~~i~~i~~~v~~l~~~~~~l~t~~d~~~~~~~i~~l 62 (268)
.+..+...+......+..++..++.+++..|-..++-.|..+
T Consensus 36 ~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el 77 (106)
T PF10805_consen 36 DIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAEL 77 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 345556666666888888888888888887776665555443
No 71
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=64.68 E-value=89 Score=26.65 Aligned_cols=53 Identities=13% Similarity=0.102 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhh
Q 024426 187 EIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQLAKASKNVK 242 (268)
Q Consensus 187 ~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a~~~l~~a~~~qk 242 (268)
+|..++.-|..-|+..+ ..=|..|+.=-.-+..+..-+.....-|..+...-.
T Consensus 155 eLaesll~LArslKtna---lAfqsalkeDnQvl~~~~k~~D~N~~~L~~~Serve 207 (244)
T KOG2678|consen 155 ELAESLLKLARSLKTNA---LAFQSALKEDNQVLGAAEKGIDVNSQGLMDVSERVE 207 (244)
T ss_pred HHHHHHHHHHHHHHHhH---HHHHHHHHhhHHHHHHHHHHHhHHHHHHHhhhHHHH
Confidence 46666666666555543 334455554444466666677777777766655433
No 72
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=63.76 E-value=18 Score=23.99 Aligned_cols=21 Identities=24% Similarity=0.202 Sum_probs=12.2
Q ss_pred HHhhccchhHHHHHHHHHHHH
Q 024426 239 KNVKSRSSWCWWVLAIIVVAL 259 (268)
Q Consensus 239 ~~qk~~rk~~~~~~i~~~i~~ 259 (268)
.++|+.|...|..++++++++
T Consensus 25 ~r~RrRrc~~~v~~v~~~~~~ 45 (60)
T PF06072_consen 25 SRRRRRRCRLAVAIVFAVVAL 45 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444666777776665544333
No 73
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=63.24 E-value=49 Score=23.14 Aligned_cols=52 Identities=17% Similarity=0.231 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCC-CcccHHHHHHHHHHHHHHHHHHHH
Q 024426 21 PSQAVAAGIFQINTAVAAFRRLVDAIGT-SKDTLDHRQKLHNTRQRILQLVKD 72 (268)
Q Consensus 21 ~~~~i~~~i~~i~~~v~~l~~~~~~l~t-~~d~~~~~~~i~~l~~~i~~l~~~ 72 (268)
..-.|...|..+..++..|+..+..+.+ ..+-.++..+++.+...+..+-.+
T Consensus 5 ILl~Ir~dIk~vd~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~~ 57 (75)
T PF05531_consen 5 ILLVIRQDIKAVDDKVDALQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNTK 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHH
Confidence 5567888999999999999999887753 455566777887776666655543
No 74
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=62.44 E-value=2.9 Score=40.44 Aligned_cols=27 Identities=11% Similarity=0.201 Sum_probs=13.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHH
Q 024426 18 SKSPSQAVAAGIFQINTAVAAFRRLVD 44 (268)
Q Consensus 18 f~~~~~~i~~~i~~i~~~v~~l~~~~~ 44 (268)
|......|...+......+..++..++
T Consensus 257 FN~Ai~~I~~g~~t~~~Al~KiQ~VVN 283 (610)
T PF01601_consen 257 FNKAIGNIQLGFTTTASALNKIQDVVN 283 (610)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555555555444
No 75
>PHA03240 envelope glycoprotein M; Provisional
Probab=62.30 E-value=8.3 Score=32.49 Aligned_cols=14 Identities=29% Similarity=0.736 Sum_probs=7.7
Q ss_pred cchhHHHHHHHHHH
Q 024426 244 RSSWCWWVLAIIVV 257 (268)
Q Consensus 244 ~rk~~~~~~i~~~i 257 (268)
+..-+|+++++++|
T Consensus 210 aaH~~WIiilIIiI 223 (258)
T PHA03240 210 AAHIAWIFIAIIII 223 (258)
T ss_pred cchHhHHHHHHHHH
Confidence 55556666555443
No 76
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=61.18 E-value=15 Score=21.82 Aligned_cols=13 Identities=23% Similarity=0.726 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 024426 249 WWVLAIIVVALVI 261 (268)
Q Consensus 249 ~~~~i~~~i~~~i 261 (268)
|+++-++.|++++
T Consensus 16 Wi~F~l~mi~vFi 28 (38)
T PF09125_consen 16 WIAFALAMILVFI 28 (38)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5544443333333
No 77
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=60.81 E-value=66 Score=23.86 Aligned_cols=49 Identities=18% Similarity=0.285 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHH
Q 024426 180 EREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTT 228 (268)
Q Consensus 180 eR~~eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~ 228 (268)
.-.+.|..+.+.+.-..+-.+.+..-+..||+.++.|..-+......+.
T Consensus 50 ~qgeqI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~inkRLD 98 (102)
T PF01519_consen 50 AQGEQINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINKRLD 98 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445777777777777777778888888999999999887777666554
No 78
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=60.45 E-value=1.5e+02 Score=28.94 Aligned_cols=92 Identities=11% Similarity=0.222 Sum_probs=55.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhhccCCcchhhHHHHH
Q 024426 20 SPSQAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLHNTRQRILQLVKDT---SAKLKSVSESDRDTDVNQNKKVE 96 (268)
Q Consensus 20 ~~~~~i~~~i~~i~~~v~~l~~~~~~l~t~~d~~~~~~~i~~l~~~i~~l~~~~---~~~l~~l~~~~~~~~~~~~~k~~ 96 (268)
.+-.+|...+.+|...|..+......+.+.. +..-+++++ .+++.-++++ +..||.+.. +++.+ .|..
T Consensus 5 KLq~eIdr~lkKv~Egve~Fd~i~ek~~~~~-n~sqkeK~e---~DLKkEIKKLQRlRdQIKtW~s----s~dIK-DK~~ 75 (575)
T KOG2150|consen 5 KLQQEIDRCLKKVDEGVEIFDEIYEKLHSAN-NVSQKEKLE---SDLKKEIKKLQRLRDQIKTWQS----SSDIK-DKDS 75 (575)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC-ChhHHHHHH---HHHHHHHHHHHHHHHHHHhhhc----ccccc-cHHH
Confidence 4678999999999999999999988876544 333355543 3444444444 444444433 22211 2233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024426 97 DAKLARDFQTVLQEFQKIQQLASE 120 (268)
Q Consensus 97 ~~~L~~~f~~~l~~fq~~q~~~~~ 120 (268)
+..-.+-...-|.+|..+++..+.
T Consensus 76 L~d~RrlIE~~MErfK~vEke~Kt 99 (575)
T KOG2150|consen 76 LLDNRRLIEQRMERFKAVEKEMKT 99 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333344455678888888776543
No 79
>PF00523 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR000776 The fusion glycoproteins from this family are found in ssRNA negative-strand viruses. This protein directs fusion of viral and cellular membranes, resulting in viral penetration, and can direct fusion of infected cells with adjoining cells, resulting in the formation of syncytia. The mature form is a dimer of polypeptides F1 and F2 linked by a disulphide bond [].; GO: 0006948 induction by virus of host cell-cell fusion; PDB: 2FYZ_D 3MAW_B 4DAG_A 1G5G_D 1SVF_A 2B9B_A 1G2C_M 3RRT_A 3RRR_D 3RKI_A ....
Probab=60.20 E-value=7.9 Score=37.02 Aligned_cols=28 Identities=4% Similarity=0.156 Sum_probs=22.3
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 024426 212 VIDDISSNIESSAATTTHARVQLAKASK 239 (268)
Q Consensus 212 ~lD~Ie~Nv~~a~~~v~~a~~~l~~a~~ 239 (268)
.|++|...+++|.++++++++-|.+...
T Consensus 439 eL~~vn~sL~~A~~~L~~Sn~iL~~v~~ 466 (490)
T PF00523_consen 439 ELGQVNNSLNNAKDLLDKSNQILDSVNP 466 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4557777888899999999999987765
No 80
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=59.92 E-value=1.1e+02 Score=26.13 Aligned_cols=74 Identities=15% Similarity=0.203 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH----------------hhHHHHHHHHHHHHHHHHHHHHHh
Q 024426 178 IEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDIS----------------SNIESSAATTTHARVQLAKASKNV 241 (268)
Q Consensus 178 i~eR~~eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie----------------~Nv~~a~~~v~~a~~~l~~a~~~q 241 (268)
...|+++.++|-.++.+-..=|.+-+.-+ +-.-++.|- .++..+.+..++..++++++.+.-
T Consensus 66 qd~reK~~~~I~ssL~eTtkdf~~~~~k~--~~dF~~~Lq~~Lk~V~tde~k~~~~~ei~k~r~e~~~ml~evK~~~E~y 143 (230)
T PF03904_consen 66 QDIREKNLKEIKSSLEETTKDFIDKTEKV--HNDFQDILQDELKDVDTDELKNIAQNEIKKVREENKSMLQEVKQSHEKY 143 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888888777777765433 333333332 335555666677777888887777
Q ss_pred hccchhHHHHHH
Q 024426 242 KSRSSWCWWVLA 253 (268)
Q Consensus 242 k~~rk~~~~~~i 253 (268)
+++-+++|.-+.
T Consensus 144 ~k~~k~~~~gi~ 155 (230)
T PF03904_consen 144 QKRQKSMYKGIG 155 (230)
T ss_pred HHHHHHHHHhHH
Confidence 766666665443
No 81
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=59.39 E-value=75 Score=24.36 Aligned_cols=61 Identities=5% Similarity=0.144 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcc-cHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhh
Q 024426 22 SQAVAAGIFQINTAVAAFRRLVDAIGTSKD-TLDHRQKLHNTRQRILQLVKDT---SAKLKSVSE 82 (268)
Q Consensus 22 ~~~i~~~i~~i~~~v~~l~~~~~~l~t~~d-~~~~~~~i~~l~~~i~~l~~~~---~~~l~~l~~ 82 (268)
..+|+..+..+....+.|.++...+++... ...+..--...+.++.+.+.+| +..+..|..
T Consensus 5 ~kEi~~l~~~lk~~~~~i~ailek~~s~~~~~e~lEsiAAKIIkDisdkIdkCeC~Kelle~Lk~ 69 (121)
T PF03310_consen 5 IKEISELIQELKKIESDIKAILEKLQSTEQDQENLESIAAKIIKDISDKIDKCECNKELLEALKK 69 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHHHHHHHHT-TTHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHhc
Confidence 456666666666666666776666654433 4444444445566666666666 444555544
No 82
>PF06789 UPF0258: Uncharacterised protein family (UPF0258); InterPro: IPR009626 This is a group of proteins of unknown function.
Probab=59.39 E-value=4.9 Score=31.92 Aligned_cols=13 Identities=15% Similarity=-0.033 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHhh
Q 024426 230 ARVQLAKASKNVK 242 (268)
Q Consensus 230 a~~~l~~a~~~qk 242 (268)
|-.-|-|-.+.+-
T Consensus 115 GyDsLLKkKEae~ 127 (159)
T PF06789_consen 115 GYDSLLKKKEAEL 127 (159)
T ss_pred chHHHHHHHHHHH
Confidence 4444444444333
No 83
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=58.82 E-value=26 Score=21.95 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 024426 187 EIEEQIGQANEIFKDLAVLVHEQG 210 (268)
Q Consensus 187 ~Ie~~i~el~~iF~dLa~lV~eQg 210 (268)
.|-..+.++++++.+|-.++.+|=
T Consensus 5 ~l~~ql~~l~~~l~elk~~l~~Q~ 28 (45)
T PF11598_consen 5 QLIKQLSELNQMLQELKELLRQQI 28 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888888764
No 84
>PF15106 TMEM156: TMEM156 protein family
Probab=58.69 E-value=11 Score=31.67 Aligned_cols=24 Identities=25% Similarity=0.652 Sum_probs=13.9
Q ss_pred hhccchhHHHHHHHHHHHHHHHHH
Q 024426 241 VKSRSSWCWWVLAIIVVALVILLL 264 (268)
Q Consensus 241 qk~~rk~~~~~~i~~~i~~~ii~~ 264 (268)
---.-|..||++++++++++|+++
T Consensus 170 ~~CsmKITWYvLVllVfiflii~i 193 (226)
T PF15106_consen 170 STCSMKITWYVLVLLVFIFLIILI 193 (226)
T ss_pred ceeehhhHHHHHHHHHHHHHHHHH
Confidence 334566667777665555555444
No 85
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=58.63 E-value=20 Score=25.30 Aligned_cols=21 Identities=5% Similarity=0.134 Sum_probs=14.8
Q ss_pred HHHHHHhhHHHHHHHHHHHHH
Q 024426 212 VIDDISSNIESSAATTTHARV 232 (268)
Q Consensus 212 ~lD~Ie~Nv~~a~~~v~~a~~ 232 (268)
.++.||.+.............
T Consensus 10 ~L~eiEr~L~~~DP~fa~~l~ 30 (82)
T PF11239_consen 10 RLEEIERQLRADDPRFAARLR 30 (82)
T ss_pred HHHHHHHHHHhcCcHHHHHhc
Confidence 788888888776666555443
No 86
>PF02346 Vac_Fusion: Chordopoxvirus fusion protein; InterPro: IPR003436 This is a family of viral fusion proteins from the Chordopoxvirinae. A 14kDa Vaccinia virus protein has been demonstrated to function as a viral fusion protein mediating cell fusion at endosmomal (low) pH []. The protein, found in the envelope fraction of the virions, is required for fusing the outermost of the two golgi-derived membranes enveloping the virus with the plasma membrane, and its subsequent release extracellularly. The N-terminal proximal region is essential for its fusion ability.; GO: 0019064 viral envelope fusion with host membrane, 0019031 viral envelope
Probab=58.55 E-value=51 Score=21.77 Aligned_cols=45 Identities=18% Similarity=0.274 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHH
Q 024426 184 GLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTT 228 (268)
Q Consensus 184 eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~ 228 (268)
+++.++.-+..|-..|.....-=..+++.+++.|.+++..-.++-
T Consensus 2 ~~k~~~~rl~~Lek~~~~~~~~c~~~~~~i~RLE~H~ETlRk~mv 46 (57)
T PF02346_consen 2 RIKDIEERLMVLEKDFRNAIKCCKENSEAIKRLEHHIETLRKYMV 46 (57)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 356777778888888888888889999999999999988765543
No 87
>PRK00295 hypothetical protein; Provisional
Probab=57.26 E-value=59 Score=22.15 Aligned_cols=45 Identities=16% Similarity=0.247 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHH
Q 024426 185 LREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTH 229 (268)
Q Consensus 185 I~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~ 229 (268)
|..||..+.-.-....+|+..|..|...||.....+......+..
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777888888999999998888887777666654
No 88
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=56.12 E-value=42 Score=32.74 Aligned_cols=26 Identities=15% Similarity=0.224 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024426 57 QKLHNTRQRILQLVKDTSAKLKSVSE 82 (268)
Q Consensus 57 ~~i~~l~~~i~~l~~~~~~~l~~l~~ 82 (268)
.+|...+.+++.+++++...=+++..
T Consensus 163 ~~I~~~V~~vNsLl~qIa~lN~qI~~ 188 (552)
T COG1256 163 AEIAATVDEVNSLLKQIADLNKQIRK 188 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666655555444443
No 89
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=55.87 E-value=15 Score=26.15 Aligned_cols=16 Identities=19% Similarity=0.551 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 024426 248 CWWVLAIIVVALVILL 263 (268)
Q Consensus 248 ~~~~~i~~~i~~~ii~ 263 (268)
+-+++++++|+++|++
T Consensus 28 MtILivLVIIiLlIml 43 (85)
T PF10717_consen 28 MTILIVLVIIILLIML 43 (85)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444443
No 90
>PRK13673 hypothetical protein; Provisional
Probab=55.59 E-value=31 Score=26.40 Aligned_cols=36 Identities=19% Similarity=0.489 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHH
Q 024426 229 HARVQLAKASKNVKSRSSWCWWVLAIIVVALVILLL 264 (268)
Q Consensus 229 ~a~~~l~~a~~~qk~~rk~~~~~~i~~~i~~~ii~~ 264 (268)
=|.-|..-+++.+.+..+..|+.+++++|+.+.+.+
T Consensus 74 Ig~mEm~l~r~kk~k~~~~~~~~~ii~lvlti~lG~ 109 (118)
T PRK13673 74 IGLMEMSLAKRKKGKPTGGFWWIFIIVLVLTILLGL 109 (118)
T ss_pred HHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHHHHH
Confidence 456667777776666666666666655554444443
No 91
>TIGR01294 P_lamban phospholamban. This model represents the short (52 residue) transmembrane phosphoprotein phospholamban. Phospholamban, in its unphosphorylated form, inhibits SERCA2, the cardiac sarcoplasmic reticulum Ca-ATPase.
Probab=54.50 E-value=18 Score=22.50 Aligned_cols=7 Identities=14% Similarity=0.368 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 024426 252 LAIIVVA 258 (268)
Q Consensus 252 ~i~~~i~ 258 (268)
++|++.+
T Consensus 39 licllli 45 (52)
T TIGR01294 39 LICLLLI 45 (52)
T ss_pred HHHHHHH
Confidence 3343333
No 92
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK. The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model.
Probab=54.48 E-value=49 Score=29.78 Aligned_cols=28 Identities=14% Similarity=0.221 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024426 55 HRQKLHNTRQRILQLVKDTSAKLKSVSE 82 (268)
Q Consensus 55 ~~~~i~~l~~~i~~l~~~~~~~l~~l~~ 82 (268)
...+|...+++++.+.+++...=+++..
T Consensus 157 ~~~~i~~~V~~iN~ll~~Ia~lN~~I~~ 184 (322)
T TIGR02492 157 INAEIKSAVTEINSLLKQIASLNKEIQQ 184 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666677776665555444443
No 93
>PF11837 DUF3357: Domain of unknown function (DUF3357); InterPro: IPR021792 This entry represents the N-terminal domain of beta-fructofuranosidase, whcih is involved in the hydrolysis of terminal non-reducing beta-D-fructofuranoside residues in beta-D-fructofuranosides. ; GO: 0004564 beta-fructofuranosidase activity, 0004575 sucrose alpha-glucosidase activity; PDB: 3UGG_A 3UGH_B 3UGF_B.
Probab=54.45 E-value=4.1 Score=30.49 Aligned_cols=23 Identities=9% Similarity=0.101 Sum_probs=0.0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHH
Q 024426 243 SRSSWCWWVLAIIVVALVILLLV 265 (268)
Q Consensus 243 ~~rk~~~~~~i~~~i~~~ii~~~ 265 (268)
++|.++|++++++.++++.+++.
T Consensus 24 ~rR~~k~~~~i~~s~~~ll~lva 46 (106)
T PF11837_consen 24 RRRPLKCLAAIFSSLLFLLSLVA 46 (106)
T ss_dssp -----------------------
T ss_pred cCCcchhHHHHHHHHHHHHHHHH
Confidence 34444676665544444444433
No 94
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=53.63 E-value=81 Score=22.64 Aligned_cols=39 Identities=13% Similarity=0.169 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHhhH-HHHHHHhhHHHHHHHHHHH
Q 024426 192 IGQANEIFKDLAVLVHEQGV-VIDDISSNIESSAATTTHA 230 (268)
Q Consensus 192 i~el~~iF~dLa~lV~eQge-~lD~Ie~Nv~~a~~~v~~a 230 (268)
+.++..+...++....+..+ .-++++..++.+...+..+
T Consensus 11 ~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~ 50 (94)
T PF05957_consen 11 RADLEDLARSAADLAGEKADEARDRAEEALDDARDRAEDA 50 (94)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444333332 3355555555555544443
No 95
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=53.05 E-value=72 Score=21.87 Aligned_cols=13 Identities=23% Similarity=0.475 Sum_probs=7.3
Q ss_pred HHHHHhhHHHHHH
Q 024426 213 IDDISSNIESSAA 225 (268)
Q Consensus 213 lD~Ie~Nv~~a~~ 225 (268)
||.||.-|+.+..
T Consensus 21 Ld~iEeKVEf~~~ 33 (70)
T TIGR01149 21 LDEIEEKVEFVNG 33 (70)
T ss_pred HHHHHHHHHHHHH
Confidence 5566666555543
No 96
>PHA03395 p10 fibrous body protein; Provisional
Probab=52.77 E-value=85 Score=22.60 Aligned_cols=51 Identities=16% Similarity=0.180 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcC-CCcccHHHHHHHHHHHHHHHHHHH
Q 024426 21 PSQAVAAGIFQINTAVAAFRRLVDAIG-TSKDTLDHRQKLHNTRQRILQLVK 71 (268)
Q Consensus 21 ~~~~i~~~i~~i~~~v~~l~~~~~~l~-t~~d~~~~~~~i~~l~~~i~~l~~ 71 (268)
..--|...|..+..++..|+..+..+. +..|-.++.++++.+...++.+-.
T Consensus 5 ILl~Ir~dIkavd~KVdalQ~~V~~l~~nlpdv~~l~~kLdaq~~~Ltti~t 56 (87)
T PHA03395 5 ILLLIRQDIKAVSDKVDALQAAVDDVRANLPDVTEINEKLDAQSASLDTISS 56 (87)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHHHHHHHH
Confidence 344678888888888888888887764 455777788888877766654443
No 97
>PF00517 GP41: Retroviral envelope protein; InterPro: IPR000328 This entry represents envelope proteins from a variety of retroviruses. It includes the GP41 subunit of the envelope protein complex from Human immunodeficiency virus (HIV) and Simian-Human immunodeficiency virus (SIV), which mediate membrane fusion during viral entry []. It has a core composed of a six-helix bundle and is folded by its trimeric N- and C-terminal heptad-repeats (NHR and CHR) []. Derivatives of this protein prevent HIV-1 from entering cell lines and primary human CD4+ cells in vitro [], making it an attractive subject of gene therapy studies against HIV and related retroviruses. The entry also represents envelop proteins from Bovine immunodeficiency virus, Feline immunodeficiency virus and Equine infectious anemia virus (EIAV) [, ], as well as the Gp36 protein from Mouse mammary tumor virus (MMTV) and Human endogenous retrovirus (HERV).; GO: 0005198 structural molecule activity, 0019031 viral envelope; PDB: 2EZO_B 2EZQ_B 2EZR_A 2JNR_B 1F23_D 2EZP_A 1JEK_A 2Q7C_A 2Q5U_A 2Q3I_A ....
Probab=52.46 E-value=48 Score=27.81 Aligned_cols=18 Identities=11% Similarity=0.104 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024426 178 IEEREHGLREIEEQIGQA 195 (268)
Q Consensus 178 i~eR~~eI~~Ie~~i~el 195 (268)
..+-++++..++..|.++
T Consensus 103 w~~W~~~i~~~~~~i~~l 120 (204)
T PF00517_consen 103 WQQWEKEISNYTGNIYNL 120 (204)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccHHHHHHH
Confidence 556888888888777665
No 98
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=52.45 E-value=63 Score=21.00 Aligned_cols=50 Identities=12% Similarity=0.216 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHH
Q 024426 182 EHGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHAR 231 (268)
Q Consensus 182 ~~eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a~ 231 (268)
+..|..|..-..+++.+-.+=+.++..=..-+|+...++..+...+.++.
T Consensus 10 ~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~ 59 (63)
T PF05739_consen 10 EQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKAL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444445555555555555555555555555555444
No 99
>PHA02692 hypothetical protein; Provisional
Probab=51.22 E-value=13 Score=25.47 Aligned_cols=20 Identities=10% Similarity=0.297 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHhC
Q 024426 249 WWVLAIIVVALVILLLVFIL 268 (268)
Q Consensus 249 ~~~~i~~~i~~~ii~~~l~~ 268 (268)
|+.++++.+++++++++++|
T Consensus 45 ~~~~ii~~~~~~~~~vll~f 64 (70)
T PHA02692 45 WTTVFLIGLIAAAIGVLLCF 64 (70)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 44444433666666666654
No 100
>PRK04325 hypothetical protein; Provisional
Probab=50.81 E-value=82 Score=21.84 Aligned_cols=45 Identities=16% Similarity=0.234 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHH
Q 024426 185 LREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTH 229 (268)
Q Consensus 185 I~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~ 229 (268)
|..||..+.-.-....+|+..|.+|...||.....+......+..
T Consensus 11 i~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777788888899999988888877777666654
No 101
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=50.60 E-value=46 Score=31.13 Aligned_cols=12 Identities=33% Similarity=0.753 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHH
Q 024426 188 IEEQIGQANEIF 199 (268)
Q Consensus 188 Ie~~i~el~~iF 199 (268)
++..+.+|.++|
T Consensus 123 v~~~l~~Le~~~ 134 (406)
T PF04906_consen 123 VEQHLTRLEEIF 134 (406)
T ss_pred HHHHHHHHHHHh
Confidence 344444455554
No 102
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=50.16 E-value=20 Score=25.74 Aligned_cols=17 Identities=18% Similarity=0.618 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024426 248 CWWVLAIIVVALVILLL 264 (268)
Q Consensus 248 ~~~~~i~~~i~~~ii~~ 264 (268)
+|++++|+++|++|++-
T Consensus 35 m~~lvI~~iFil~Vilw 51 (94)
T PF05393_consen 35 MWFLVICGIFILLVILW 51 (94)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 56666665555555443
No 103
>PRK07739 flgK flagellar hook-associated protein FlgK; Validated
Probab=50.16 E-value=55 Score=31.54 Aligned_cols=54 Identities=11% Similarity=0.151 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCcchhhHHHHHHHHHHHHHHHHH
Q 024426 55 HRQKLHNTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKKVEDAKLARDFQTVL 108 (268)
Q Consensus 55 ~~~~i~~l~~~i~~l~~~~~~~l~~l~~~~~~~~~~~~~k~~~~~L~~~f~~~l 108 (268)
...+|.....+++.+.+++...=+++......+.......-+++.|..++.+.+
T Consensus 169 ~~~~i~~~V~~iN~ll~~Ia~LN~~I~~~~~~g~~~ndLlDqRD~ll~~LS~~v 222 (507)
T PRK07739 169 LKSEIDVTVKEINSLASQISDLNKQIAKVEPNGYLPNDLYDQRDLLLDELSKIV 222 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhhc
Confidence 345666677777777766655544544321111111123334455555544433
No 104
>PRK07191 flgK flagellar hook-associated protein FlgK; Validated
Probab=50.00 E-value=56 Score=31.00 Aligned_cols=28 Identities=14% Similarity=0.118 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024426 55 HRQKLHNTRQRILQLVKDTSAKLKSVSE 82 (268)
Q Consensus 55 ~~~~i~~l~~~i~~l~~~~~~~l~~l~~ 82 (268)
+..+|....++++.+.+++...=+++..
T Consensus 157 ~~~~i~~~V~~iN~ll~~Ia~LN~~I~~ 184 (456)
T PRK07191 157 IGQQRDATVKQINSLTRSIADYNQKILK 184 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666677776666555555543
No 105
>PRK02793 phi X174 lysis protein; Provisional
Probab=49.77 E-value=84 Score=21.66 Aligned_cols=46 Identities=13% Similarity=0.225 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHH
Q 024426 184 GLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTH 229 (268)
Q Consensus 184 eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~ 229 (268)
.|..||..+.-.-....+|+..|..|...||.....+......+..
T Consensus 9 Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 9 RLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666666666777777778888888888888777766665544
No 106
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=48.55 E-value=64 Score=24.70 Aligned_cols=28 Identities=11% Similarity=0.425 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024426 175 EAIIEEREHGLREIEEQIGQANEIFKDL 202 (268)
Q Consensus 175 ~~~i~eR~~eI~~Ie~~i~el~~iF~dL 202 (268)
..++=|+.+++.+|...|.||.+||++.
T Consensus 88 LellGEK~E~veEL~~Dv~DlK~myr~Q 115 (120)
T PF12325_consen 88 LELLGEKSEEVEELRADVQDLKEMYREQ 115 (120)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 3468899999999999999999999874
No 107
>COG3736 VirB8 Type IV secretory pathway, component VirB8 [Intracellular trafficking and secretion]
Probab=48.48 E-value=44 Score=28.84 Aligned_cols=22 Identities=14% Similarity=0.361 Sum_probs=11.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHH
Q 024426 245 SSWCWWVLAIIVVALVILLLVF 266 (268)
Q Consensus 245 rk~~~~~~i~~~i~~~ii~~~l 266 (268)
|++.||+++++.++.++.++.|
T Consensus 40 r~~~~~va~~~~~l~v~~~~~I 61 (239)
T COG3736 40 RRLAWRVAILFTLLAVAAVIAI 61 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666655555555444444
No 108
>PRK00736 hypothetical protein; Provisional
Probab=48.22 E-value=86 Score=21.34 Aligned_cols=45 Identities=13% Similarity=0.279 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHH
Q 024426 185 LREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTH 229 (268)
Q Consensus 185 I~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~ 229 (268)
|..||..+.-.-....+|+..|..|...||....-+......+..
T Consensus 7 i~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 7 LTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777777777777777778888888888888777776666544
No 109
>PF08173 YbgT_YccB: Membrane bound YbgT-like protein; InterPro: IPR012994 This family contains a set of membrane proteins, typically 33 amino acids long. The family has no known function, but the protein is found in the operon CydAB in Escherichia coli. Members have a consensus motif (MWYFXW), which is rich in aromatic residues. The protein forms a single membrane-spanning helix. This family seems to be restricted to proteobacteria [].
Probab=47.97 E-value=26 Score=19.57 Aligned_cols=18 Identities=22% Similarity=0.388 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024426 248 CWWVLAIIVVALVILLLV 265 (268)
Q Consensus 248 ~~~~~i~~~i~~~ii~~~ 265 (268)
||++..|+++.+++.+.+
T Consensus 1 MWYfaWilG~~lA~~~~i 18 (28)
T PF08173_consen 1 MWYFAWILGVLLACAFGI 18 (28)
T ss_pred ChhHHHHHHHHHHHHHHH
Confidence 355555555554444433
No 110
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=47.94 E-value=1.4e+02 Score=23.86 Aligned_cols=61 Identities=8% Similarity=0.239 Sum_probs=34.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024426 18 SKSPSQAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSE 82 (268)
Q Consensus 18 f~~~~~~i~~~i~~i~~~v~~l~~~~~~l~t~~d~~~~~~~i~~l~~~i~~l~~~~~~~l~~l~~ 82 (268)
+.....++...+..+...+..++.-...|.+..-+.++...|..+..++ ..+..+|..+..
T Consensus 77 ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~----~~l~~kL~~l~~ 137 (169)
T PF07106_consen 77 LDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEI----EELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH----HHHHHHHHHHHh
Confidence 3334455555555555555555555555555555566777777766554 444566666665
No 111
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.72 E-value=56 Score=27.64 Aligned_cols=49 Identities=18% Similarity=0.291 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccc----hhHHHHHHHHHHHHHHHHHHHh
Q 024426 219 NIESSAATTTHARVQLAKASKNVKSRS----SWCWWVLAIIVVALVILLLVFI 267 (268)
Q Consensus 219 Nv~~a~~~v~~a~~~l~~a~~~qk~~r----k~~~~~~i~~~i~~~ii~~~l~ 267 (268)
.++.|.+.+.....+|.++.+.=+.=. +-+|.+.+|+++.+++++++++
T Consensus 164 ~L~rar~rL~~td~~lgkS~kiL~tM~RR~~~nk~~~~aii~~l~~~il~ilY 216 (220)
T KOG1666|consen 164 QLERARERLRETDANLGKSRKILTTMTRRLIRNKFTLTAIIALLVLAILLILY 216 (220)
T ss_pred HHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666677777777777766655322 1134444444444444444444
No 112
>PF13198 DUF4014: Protein of unknown function (DUF4014)
Probab=47.32 E-value=26 Score=24.07 Aligned_cols=17 Identities=0% Similarity=0.036 Sum_probs=9.7
Q ss_pred HHhhccchhHHHHHHHH
Q 024426 239 KNVKSRSSWCWWVLAII 255 (268)
Q Consensus 239 ~~qk~~rk~~~~~~i~~ 255 (268)
.|-|++|+.-..+++.+
T Consensus 8 ~Y~rrSr~~efLF~ilf 24 (72)
T PF13198_consen 8 EYPRRSRKTEFLFFILF 24 (72)
T ss_pred HccchhHHHHHHHHHHH
Confidence 45666777655554433
No 113
>PRK07521 flgK flagellar hook-associated protein FlgK; Validated
Probab=47.13 E-value=62 Score=30.94 Aligned_cols=54 Identities=7% Similarity=0.120 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCcchhhHHHHHHHHHHHHHHHHH
Q 024426 55 HRQKLHNTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKKVEDAKLARDFQTVL 108 (268)
Q Consensus 55 ~~~~i~~l~~~i~~l~~~~~~~l~~l~~~~~~~~~~~~~k~~~~~L~~~f~~~l 108 (268)
...+|...+.+++.+.+++...=+++......+....-..-+++.|..++.+++
T Consensus 152 ~~~~i~~~V~~iN~l~~~Ia~LN~~I~~~~~~g~~~ndL~DqRD~ll~~LS~~v 205 (483)
T PRK07521 152 ADAEIADSVDTLNDLLAQFEDANNAVVSGTATGRDASDALDQRDKLLKQISQIV 205 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHHhhc
Confidence 355666777777777766666555554422111111223344555555554443
No 114
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=46.71 E-value=21 Score=27.48 Aligned_cols=16 Identities=25% Similarity=0.158 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 024426 250 WVLAIIVVALVILLLV 265 (268)
Q Consensus 250 ~~~i~~~i~~~ii~~~ 265 (268)
|++++++||++|++++
T Consensus 70 i~gv~aGvIg~Illi~ 85 (122)
T PF01102_consen 70 IFGVMAGVIGIILLIS 85 (122)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4445555655554443
No 115
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.34 E-value=34 Score=23.55 Aligned_cols=14 Identities=7% Similarity=0.176 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q 024426 249 WWVLAIIVVALVIL 262 (268)
Q Consensus 249 ~~~~i~~~i~~~ii 262 (268)
+++++++++++.++
T Consensus 6 ail~ivl~ll~G~~ 19 (71)
T COG3763 6 AILLIVLALLAGLI 19 (71)
T ss_pred HHHHHHHHHHHHHH
Confidence 34333333333333
No 116
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated
Probab=45.57 E-value=73 Score=31.61 Aligned_cols=28 Identities=7% Similarity=0.188 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024426 55 HRQKLHNTRQRILQLVKDTSAKLKSVSE 82 (268)
Q Consensus 55 ~~~~i~~l~~~i~~l~~~~~~~l~~l~~ 82 (268)
...+|.....+++.+.+++...=+++..
T Consensus 169 ~~~~i~~~V~~iN~ll~qIa~LN~qI~~ 196 (627)
T PRK06665 169 ANDEIEITVEEINNILRNIADLNEQIVK 196 (627)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666677666666555555543
No 117
>TIGR02106 cyd_oper_ybgT cyd operon protein YbgT. This model describes a very small (as short as 33 amino acids) protein of unknown function, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It begins with an aromatic motif MWYFXW and appears to contain a membrane-spanning helix. This protein appears to be restricted to the Proteobacteria and exist in a single copy only. We suggest it may be a membrane subunit of the terminal oxidase. The family is named after the E. coli member YbgT. This model excludes the apparently related protein YccB.
Probab=44.75 E-value=31 Score=19.61 Aligned_cols=17 Identities=18% Similarity=0.284 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024426 248 CWWVLAIIVVALVILLL 264 (268)
Q Consensus 248 ~~~~~i~~~i~~~ii~~ 264 (268)
|||+..|+++.+++.+.
T Consensus 1 MWYfaWilG~~lA~~~~ 17 (30)
T TIGR02106 1 MWYFAWILGTLLACAFG 17 (30)
T ss_pred ChhHHHHHHHHHHHHHH
Confidence 35555454444444433
No 118
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=44.59 E-value=71 Score=21.00 Aligned_cols=40 Identities=18% Similarity=0.383 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHhC
Q 024426 227 TTHARVQLAKASKNVKSRSSWCWWVLAIIVVALVILLLVFIL 268 (268)
Q Consensus 227 v~~a~~~l~~a~~~qk~~rk~~~~~~i~~~i~~~ii~~~l~~ 268 (268)
+-.|.-++..+.++++..+.+ ...++..++.+++.++++|
T Consensus 33 i~~Gi~~l~~~~~~~~~~~~~--~~~l~~gi~~i~~Gi~~lf 72 (72)
T PF03729_consen 33 IISGIFQLISAFRRRKGSKGW--WWSLLSGILSIVLGIILLF 72 (72)
T ss_pred HHHHHHHHHHHHhccccchhh--HHHHHHHHHHHHHHHHHHC
Confidence 446777777777732222332 3333344455555555544
No 119
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=44.28 E-value=3.1e+02 Score=26.59 Aligned_cols=54 Identities=19% Similarity=0.306 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHH
Q 024426 176 AIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTH 229 (268)
Q Consensus 176 ~~i~eR~~eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~ 229 (268)
..+.+=...+.+|..++.++.+++.+++.-+.+|...++.|..+++.....++.
T Consensus 433 ~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~eq~~~~~~i~~~i~~i~~~~~~ 486 (554)
T PRK15041 433 TLVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQ 486 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666778899999999999999999999999999999999998877666555
No 120
>PRK05683 flgK flagellar hook-associated protein FlgK; Validated
Probab=44.13 E-value=77 Score=31.79 Aligned_cols=54 Identities=7% Similarity=0.140 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCcchhhHHHHHHHHHHHHHHHHH
Q 024426 55 HRQKLHNTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKKVEDAKLARDFQTVL 108 (268)
Q Consensus 55 ~~~~i~~l~~~i~~l~~~~~~~l~~l~~~~~~~~~~~~~k~~~~~L~~~f~~~l 108 (268)
+..+|.....+++.+.++|...=++|......+....-..-+++.|..++.+++
T Consensus 157 vn~qI~~~V~~IN~l~~qIA~LN~qI~~~~~~G~~~NdLlDqRD~Ll~eLS~~v 210 (676)
T PRK05683 157 INSQLSAMTDQVNNLTTSIASYNKQIAQASASGATPNDLLDARDEAVRQLNELV 210 (676)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHhHHHHHHHHHHHHhhc
Confidence 455667777777777766655555544321111111223345555656554444
No 121
>PRK14762 membrane protein; Provisional
Probab=44.11 E-value=45 Score=18.00 Aligned_cols=11 Identities=45% Similarity=0.957 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q 024426 249 WWVLAIIVVAL 259 (268)
Q Consensus 249 ~~~~i~~~i~~ 259 (268)
|++.+|++|=+
T Consensus 6 w~i~iifligl 16 (27)
T PRK14762 6 WAVLIIFLIGL 16 (27)
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 122
>COG4640 Predicted membrane protein [Function unknown]
Probab=43.85 E-value=23 Score=32.71 Aligned_cols=24 Identities=8% Similarity=-0.102 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHhhcc-chhHHHHH
Q 024426 229 HARVQLAKASKNVKSR-SSWCWWVL 252 (268)
Q Consensus 229 ~a~~~l~~a~~~qk~~-rk~~~~~~ 252 (268)
+|++.+..-..-.|++ .|++.+.+
T Consensus 31 qan~~tn~i~~trrkniskK~ii~w 55 (465)
T COG4640 31 QANKSTNEIIQTRRKNISKKKIIPW 55 (465)
T ss_pred hhhHHHHHHHHhhccCCccceeehh
Confidence 4444443333333433 44443333
No 123
>PF07432 Hc1: Histone H1-like protein Hc1; InterPro: IPR010886 This family consists of several bacterial histone H1-like Hc1 proteins, which are found in Chlamydiae and Bacteroidetes species. Chlamydiae are prokaryotic obligate intracellular parasites that undergo a biphasic life cycle involving an infectious, extracellular form known as elementary bodies and an intracellular, replicating form termed reticulate bodies. The gene coding for Hc1 is expressed only during the late stages of the chlamydial life cycle concomitant with the reorganisation of chlamydial reticulate bodies into elementary bodies, suggesting that the Hc1 protein plays a role in the condensation of chlamydial chromatin during intracellular differentiation [].; GO: 0003677 DNA binding
Probab=43.00 E-value=1.2e+02 Score=22.99 Aligned_cols=53 Identities=15% Similarity=0.285 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024426 60 HNTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKKVEDAKLARDFQTVLQEFQKIQQLA 118 (268)
Q Consensus 60 ~~l~~~i~~l~~~~~~~l~~l~~~~~~~~~~~~~k~~~~~L~~~f~~~l~~fq~~q~~~ 118 (268)
.++...+.+++..+...+.++...+. ..+.|.| +-+.++..++.+|+......
T Consensus 3 Kdt~~kmkeL~e~~~~D~~K~EKGNK-AAGtRaR-----K~sleLeKLaKefRKeSiea 55 (123)
T PF07432_consen 3 KDTFKKMKELLESFEADAEKAEKGNK-AAGTRAR-----KASLELEKLAKEFRKESIEA 55 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccch-HHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 44555666777777777666544322 2334444 44567888888888876443
No 124
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=42.76 E-value=14 Score=26.92 Aligned_cols=20 Identities=10% Similarity=0.223 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 024426 248 CWWVLAIIVVALVILLLVFI 267 (268)
Q Consensus 248 ~~~~~i~~~i~~~ii~~~l~ 267 (268)
|+++.....+|+++|++.++
T Consensus 42 WpyLA~GGG~iLilIii~Lv 61 (98)
T PF07204_consen 42 WPYLAAGGGLILILIIIALV 61 (98)
T ss_pred hHHhhccchhhhHHHHHHHH
Confidence 44554444444444444443
No 125
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=42.66 E-value=90 Score=20.00 Aligned_cols=57 Identities=19% Similarity=0.298 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 024426 184 GLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQLAKASKN 240 (268)
Q Consensus 184 eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a~~~l~~a~~~ 240 (268)
.+.+-...+..|.....++..+..+=|..|+.=...++....++..+...+..|.+.
T Consensus 6 ~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~ 62 (66)
T smart00397 6 MEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKR 62 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555555566666555555555543
No 126
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=42.64 E-value=1.2e+02 Score=21.33 Aligned_cols=13 Identities=31% Similarity=0.588 Sum_probs=6.6
Q ss_pred HHHHHhhHHHHHH
Q 024426 213 IDDISSNIESSAA 225 (268)
Q Consensus 213 lD~Ie~Nv~~a~~ 225 (268)
||.||.-|+.+..
T Consensus 24 LD~iEeKVEftn~ 36 (77)
T PRK01026 24 LDEIEEKVEFTNA 36 (77)
T ss_pred HHHHHHHHHHHHH
Confidence 4555555554443
No 127
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=42.52 E-value=71 Score=20.28 Aligned_cols=9 Identities=0% Similarity=0.024 Sum_probs=3.4
Q ss_pred HHHhhccch
Q 024426 238 SKNVKSRSS 246 (268)
Q Consensus 238 ~~~qk~~rk 246 (268)
.++=++++.
T Consensus 9 ~~~f~~nk~ 17 (56)
T PF12911_consen 9 WRRFRRNKL 17 (56)
T ss_pred HHHHHhCch
Confidence 333334443
No 128
>PF00429 TLV_coat: ENV polyprotein (coat polyprotein); InterPro: IPR018154 Enveloped viruses such as Human immunodeficiency virus 1, influenza virus, and Ebola virus sp. express a surface glycoprotein that mediates both cell attachment and fusion of viral and cellular membranes. The ENV polyprotein (coat polyprotein) usually contains two coat proteins which differ depending on the source. The structure of a number of the ENV polyprotein domains have been determined: The crystal structure of an extraviral segment of the Moloney murine leukemia virus (MoMuLV) transmembrane (TM) subunit has been determined to 1.7-A resolution. This segment contains a trimeric coiled coil, with a hydrophobic cluster at its base and a strand that packs in an antiparallel orientation against the coiled coil. This structure serves as a model for a wide range of viral fusion proteins; key residues in this structure are conserved among C- and D-type retroviruses and the filovirus ebola []. An essential step in retrovirus infection is the binding of the virus to its receptor on a target cell. The structure of the receptor-binding domain of the envelope glycoprotein from Friend murine leukemia virus (F-MuLV) has been determined determined to 2.0-A resolution. The core of the domain is an antiparallel beta sandwich, with two interstrand loops forming a helical subdomain atop the sandwich. The residues in the helical region, but not in the beta sandwich, are highly variable among mammalian C-type retroviruses with distinct tropisms, indicating that the helical subdomain determines the receptor specificity of the virus []. ; PDB: 1LCS_B 1MOF_A 1XNL_A 2XZ3_A 1AOL_A 1Y4M_C.
Probab=42.19 E-value=1.8e+02 Score=28.58 Aligned_cols=36 Identities=22% Similarity=0.315 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 024426 178 IEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVI 213 (268)
Q Consensus 178 i~eR~~eI~~Ie~~i~el~~iF~dLa~lV~eQge~l 213 (268)
..+=+.+++.++++|..|++=..-|+.+|-+----|
T Consensus 430 ~~~~~~d~~~~~~~i~~l~~~~~sl~~~v~qnr~~l 465 (561)
T PF00429_consen 430 SNALEEDLQALEDSISALQEQLTSLAEVVLQNRRAL 465 (561)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhh
Confidence 334445556666666666655555555554433333
No 129
>COG4218 MtrF Tetrahydromethanopterin S-methyltransferase, subunit F [Coenzyme metabolism]
Probab=41.77 E-value=1.1e+02 Score=20.94 Aligned_cols=56 Identities=16% Similarity=0.057 Sum_probs=27.3
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHhC
Q 024426 212 VIDDISSNIESSAATTTHARVQLAKASKNVKSRSSWCWWVLAIIVVALVILLLVFIL 268 (268)
Q Consensus 212 ~lD~Ie~Nv~~a~~~v~~a~~~l~~a~~~qk~~rk~~~~~~i~~~i~~~ii~~~l~~ 268 (268)
.+|+|+.-|++....++--.++-+--.- --++|-....+-+++.++++++++.+.|
T Consensus 18 n~~~id~yVediryr~qligRd~rL~sG-l~st~i~GlaiGfvfA~vLv~illllaf 73 (73)
T COG4218 18 NTDRIDTYVEDIRYRSQLIGRDARLYSG-LNSTRIAGLAIGFVFAGVLVGILLLLAF 73 (73)
T ss_pred ChhHHHHHHHHHHHHHHhhcccchhhhh-hhhhhhHHHHHHHHHHHHHHHHHHHhcC
Confidence 3567777777666555432211111000 1234544455555666666666665544
No 130
>PRK14749 hypothetical protein; Provisional
Probab=41.38 E-value=40 Score=19.05 Aligned_cols=16 Identities=25% Similarity=0.598 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 024426 248 CWWVLAIIVVALVILL 263 (268)
Q Consensus 248 ~~~~~i~~~i~~~ii~ 263 (268)
||++..|+++.++..+
T Consensus 1 MWYfaWiLG~~lAc~f 16 (30)
T PRK14749 1 MWYLLWFVGILLMCSL 16 (30)
T ss_pred ChHHHHHHHHHHHHHH
Confidence 3555555554444433
No 131
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=41.13 E-value=46 Score=24.61 Aligned_cols=35 Identities=11% Similarity=0.053 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHH
Q 024426 229 HARVQLAKASKNVKSRSSWCWWVLAIIVVALVILL 263 (268)
Q Consensus 229 ~a~~~l~~a~~~qk~~rk~~~~~~i~~~i~~~ii~ 263 (268)
.|..-|..+..|..+.+++=+.++++++|.++++.
T Consensus 32 ~G~~YL~~~y~y~~sh~WRN~GIli~f~i~f~~~~ 66 (103)
T PF06422_consen 32 SGDDYLEESYGYSYSHRWRNFGILIAFWIFFIVLT 66 (103)
T ss_pred eHHHHHhhhccccccchhhhHHHHHHHHHHHHHHH
Confidence 46667777777777655554545444444444333
No 132
>PRK10132 hypothetical protein; Provisional
Probab=40.76 E-value=1.5e+02 Score=22.16 Aligned_cols=50 Identities=14% Similarity=0.176 Sum_probs=22.3
Q ss_pred HHHHHHhhHHHHHHHHH-------HHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHH
Q 024426 212 VIDDISSNIESSAATTT-------HARVQLAKASKNVKSRSSWCWWVLAIIVVALVILLL 264 (268)
Q Consensus 212 ~lD~Ie~Nv~~a~~~v~-------~a~~~l~~a~~~qk~~rk~~~~~~i~~~i~~~ii~~ 264 (268)
.=++++..+..+..... .+..-...+..|-+.+. |..+-|.+.|.+++.+
T Consensus 46 lR~r~~~~L~~ar~~l~~~~~~~~~~~~a~~~~~~~V~~~P---w~svgiaagvG~llG~ 102 (108)
T PRK10132 46 ARRKAQALLKETRARMHGRTRVQQAARDAVGCADTFVRERP---WCSVGTAAAVGIFIGA 102 (108)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCc---HHHHHHHHHHHHHHHH
Confidence 34556666666554333 23333344445554444 3333333334444433
No 133
>PF04639 Baculo_E56: Baculoviral E56 protein, specific to ODV envelope; InterPro: IPR006733 This family represents the E56 protein, which is localized to the occlusion derived virus (ODV) envelope, but not to the budded virus (BV) envelope []. Signals necessary for transport and/or retention into this structure are believed to be found within the C-terminal portion of ODV-E56.; GO: 0019031 viral envelope
Probab=40.58 E-value=23 Score=31.26 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=15.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhC
Q 024426 245 SSWCWWVLAIIVVALVILLLVFIL 268 (268)
Q Consensus 245 rk~~~~~~i~~~i~~~ii~~~l~~ 268 (268)
-+.+=++++|.+|++++|+.+++|
T Consensus 275 ~~l~piil~IG~vl~i~~Ig~~if 298 (305)
T PF04639_consen 275 DSLLPIILIIGGVLLIVFIGYFIF 298 (305)
T ss_pred hhhhHHHHHHHHHHHHHHhhheee
Confidence 344556666777777777777665
No 134
>PRK04406 hypothetical protein; Provisional
Probab=40.29 E-value=1.3e+02 Score=21.00 Aligned_cols=46 Identities=11% Similarity=0.275 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHH
Q 024426 184 GLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTH 229 (268)
Q Consensus 184 eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~ 229 (268)
.|..||..+.-.-....+|+..|..|...||.....+......+..
T Consensus 12 Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 12 RINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4666777777777777777788888888888888777766655543
No 135
>PRK13865 type IV secretion system protein VirB8; Provisional
Probab=40.12 E-value=1e+02 Score=26.39 Aligned_cols=10 Identities=20% Similarity=-0.184 Sum_probs=4.1
Q ss_pred hccchhHHHH
Q 024426 242 KSRSSWCWWV 251 (268)
Q Consensus 242 k~~rk~~~~~ 251 (268)
++++|..|++
T Consensus 34 ~rs~k~aw~v 43 (229)
T PRK13865 34 RRLSRVLAAV 43 (229)
T ss_pred HHHHHHHHHH
Confidence 3344444443
No 136
>TIGR03745 conj_TIGR03745 integrating conjugative element membrane protein, PFL_4702 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=40.00 E-value=76 Score=23.65 Aligned_cols=45 Identities=11% Similarity=0.231 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhccchhH-HHHHHHHHHHHHHHHHHHh
Q 024426 223 SAATTTHARVQLAKASKNVKSRSSWC-WWVLAIIVVALVILLLVFI 267 (268)
Q Consensus 223 a~~~v~~a~~~l~~a~~~qk~~rk~~-~~~~i~~~i~~~ii~~~l~ 267 (268)
+...+.-|..-+.+..+.+..+.+|. .-..+++.++++++++|++
T Consensus 52 a~aFi~Va~~a~~ty~Ei~~Gk~~W~~fg~~v~VGviLLv~vIwLl 97 (104)
T TIGR03745 52 AIAFIGVAYHALGTYHEIRTGKATWGDFGATVVVGAILLVVIIWLL 97 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHcchhhHHhCcchhhhHhHHHHHHHHHH
Confidence 55566666777777777766433332 3345566667777766653
No 137
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.93 E-value=84 Score=26.32 Aligned_cols=16 Identities=19% Similarity=0.551 Sum_probs=10.0
Q ss_pred HHhhHHHHHHHhhHHH
Q 024426 207 HEQGVVIDDISSNIES 222 (268)
Q Consensus 207 ~eQge~lD~Ie~Nv~~ 222 (268)
+--|-|+++||.=.+.
T Consensus 136 evk~vM~eNIekvldR 151 (217)
T KOG0859|consen 136 EVKGVMMENIEKVLDR 151 (217)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3457778777765544
No 138
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=39.83 E-value=1.6e+02 Score=21.99 Aligned_cols=45 Identities=7% Similarity=0.141 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCccc--HHHHHHHHHHHHHHHHH
Q 024426 25 VAAGIFQINTAVAAFRRLVDAIGTSKDT--LDHRQKLHNTRQRILQL 69 (268)
Q Consensus 25 i~~~i~~i~~~v~~l~~~~~~l~t~~d~--~~~~~~i~~l~~~i~~l 69 (268)
|......++..+.+++.+.+.-+++.+. .++|.+++.+.++.+..
T Consensus 10 ~~~l~~el~~L~d~lEevL~ssg~~a~~e~~~lR~r~~~~Lk~~r~r 56 (104)
T COG4575 10 IDQLLAELQELLDTLEEVLKSSGSLAGDEAEELRSKAESALKEARDR 56 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHH
Confidence 3555556666666777777766655432 24455544444333333
No 139
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=39.07 E-value=3.2e+02 Score=25.38 Aligned_cols=50 Identities=22% Similarity=0.268 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhHHHHHHHhhHHHHHHHH
Q 024426 177 IIEEREHGLREIEEQIGQANEI-FKDLAVLVHEQGVVIDDISSNIESSAATT 227 (268)
Q Consensus 177 ~i~eR~~eI~~Ie~~i~el~~i-F~dLa~lV~eQge~lD~Ie~Nv~~a~~~v 227 (268)
+.+||++- ..+|..+.++-++ -.+++.|=+++..|=.+|.|.-..=..++
T Consensus 301 LQEERyR~-erLEEqLNdlteLqQnEi~nLKqElasmeervaYQsyERaRdI 351 (455)
T KOG3850|consen 301 LQEERYRY-ERLEEQLNDLTELQQNEIANLKQELASMEERVAYQSYERARDI 351 (455)
T ss_pred HHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566543 4555555555554 35788888888888877777544433333
No 140
>PRK09793 methyl-accepting protein IV; Provisional
Probab=38.93 E-value=3.6e+02 Score=25.89 Aligned_cols=56 Identities=14% Similarity=0.286 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHH
Q 024426 177 IIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARV 232 (268)
Q Consensus 177 ~i~eR~~eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a~~ 232 (268)
.+.+=...+.+|..++.++.+.+.+++.-+.+|...++.|..+++....-+++...
T Consensus 430 ~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~e~~~~~~~i~~~i~~i~~~~~~~~~ 485 (533)
T PRK09793 430 LVNNAAATMTDIVSSVTRVNDIMGEIASASEEQRRGIEQVAQAVSQMDQVTQQNAS 485 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555667888999999999999999999999999999998888776665555443
No 141
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.92 E-value=2.9e+02 Score=24.83 Aligned_cols=83 Identities=13% Similarity=0.229 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhc----cchhHHHHHHHHHHH
Q 024426 183 HGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQLAKASKNVKS----RSSWCWWVLAIIVVA 258 (268)
Q Consensus 183 ~eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a~~~l~~a~~~qk~----~rk~~~~~~i~~~i~ 258 (268)
.+...+-..+..+..=..||+.|=+.=-+-|-.=+.||+--.+.+.++..++..+.+--++ +++...|++ ++++|
T Consensus 225 ~~~n~~~devrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d~~~~~teNIk~gNe~irka~~~~~~~r~~~l-f~llv 303 (316)
T KOG3894|consen 225 NELNELLDEVRQIEKRLVEISALQDIFSEHVLQQDQNIDLIHDLQSGATENIKDGNEEIRKAKRNNGGLRVFLL-FFLLV 303 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHhcccchhHHH-HHHHH
Confidence 3444444455555555666666665555666677899999999999999999988776443 344444544 55566
Q ss_pred HHHHHHHH
Q 024426 259 LVILLLVF 266 (268)
Q Consensus 259 ~~ii~~~l 266 (268)
+-++++++
T Consensus 304 lsf~lLFl 311 (316)
T KOG3894|consen 304 LSFSLLFL 311 (316)
T ss_pred HHHHHHHH
Confidence 66666665
No 142
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=37.89 E-value=11 Score=36.71 Aligned_cols=28 Identities=18% Similarity=0.364 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhccchhHHHH
Q 024426 223 SAATTTHARVQLAKASKNVKSRSSWCWWV 251 (268)
Q Consensus 223 a~~~v~~a~~~l~~a~~~qk~~rk~~~~~ 251 (268)
.-.++-....+|+.-.+|.. .=||-||.
T Consensus 523 ~I~~LN~tlVdLe~Ln~~e~-YiKWPWyV 550 (610)
T PF01601_consen 523 VIDNLNNTLVDLEWLNRYET-YIKWPWYV 550 (610)
T ss_dssp HHHHHHCCHHHCCHHTTCCC-HH------
T ss_pred HHHHhhhhheeHHHhcceeE-EeehHHHH
Confidence 33334444445555555433 33444433
No 143
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=37.71 E-value=70 Score=22.65 Aligned_cols=29 Identities=34% Similarity=0.581 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024426 178 IEEREHGLREIEEQIGQANEIFKDLAVLV 206 (268)
Q Consensus 178 i~eR~~eI~~Ie~~i~el~~iF~dLa~lV 206 (268)
++++..+|+.++..+.-..++..++..+|
T Consensus 54 ~eeq~~~i~~Le~~i~~k~~~L~~~~~~~ 82 (83)
T PF07544_consen 54 VEEQEEEIEELEEQIRKKREVLQKFKERV 82 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 77788889999999998888888887765
No 144
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=36.89 E-value=1.6e+02 Score=21.14 Aligned_cols=95 Identities=12% Similarity=0.095 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhccCCcchhhHHHHHHH
Q 024426 21 PSQAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLHNTRQRILQLVKDTSAK--LKSVSESDRDTDVNQNKKVEDA 98 (268)
Q Consensus 21 ~~~~i~~~i~~i~~~v~~l~~~~~~l~t~~d~~~~~~~i~~l~~~i~~l~~~~~~~--l~~l~~~~~~~~~~~~~k~~~~ 98 (268)
.+..|...+..+...+..|..-.+.-.-...-..+...++.+...+...++.+... ........ ..........+.
T Consensus 4 ~l~~in~~v~~l~k~~~~lGt~~Ds~~lR~~i~~~~~~~~~l~k~~~~~l~~l~~~~~~~~~~~~~--k~~~~KL~~df~ 81 (102)
T PF14523_consen 4 NLFKINQNVSQLEKLVNQLGTPRDSQELREKIHQLIQKTNQLIKEISELLKKLNSLSSDRSNDRQQ--KLQREKLSRDFK 81 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHH-SSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSH----HHHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH--HHHHHHHHHHHH
Confidence 34566667777777666663221100000001134555666666666666554443 10000000 000112233456
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024426 99 KLARDFQTVLQEFQKIQQL 117 (268)
Q Consensus 99 ~L~~~f~~~l~~fq~~q~~ 117 (268)
.+.+.|+.+...|...++.
T Consensus 82 ~~l~~fq~~q~~~~~~~k~ 100 (102)
T PF14523_consen 82 EALQEFQKAQRRYAEKEKQ 100 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 6778888888888777654
No 145
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=36.63 E-value=47 Score=26.34 Aligned_cols=16 Identities=13% Similarity=0.206 Sum_probs=7.7
Q ss_pred HhhHHHHHHHhhHHHH
Q 024426 208 EQGVVIDDISSNIESS 223 (268)
Q Consensus 208 eQge~lD~Ie~Nv~~a 223 (268)
.+|..+...-..+-+.
T Consensus 79 ~~~~~v~~~k~~LFs~ 94 (145)
T PF10661_consen 79 KSDNTVKETKDSLFSS 94 (145)
T ss_pred cccchHHHHHHHhhcc
Confidence 4454555554444443
No 146
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=36.40 E-value=1.2e+02 Score=23.70 Aligned_cols=31 Identities=16% Similarity=0.334 Sum_probs=15.3
Q ss_pred HHHHHHHcCCC--cccHHHHHHHHHHHHHHHHH
Q 024426 39 FRRLVDAIGTS--KDTLDHRQKLHNTRQRILQL 69 (268)
Q Consensus 39 l~~~~~~l~t~--~d~~~~~~~i~~l~~~i~~l 69 (268)
+.+..+.||-| +|-..|+.+|+.|...+..+
T Consensus 96 V~~aL~rLgvPs~~dv~~L~~rId~L~~~v~~l 128 (132)
T PF05597_consen 96 VARALNRLGVPSRKDVEALSARIDQLTAQVERL 128 (132)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445533 35555666665555554443
No 147
>PF07457 DUF1516: Protein of unknown function (DUF1516); InterPro: IPR010899 This family contains a number of hypothetical bacterial proteins of unknown function approximately 120 residues long.
Probab=36.37 E-value=68 Score=24.16 Aligned_cols=31 Identities=23% Similarity=0.491 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHhhccchhHHHHHHHHHHH
Q 024426 228 THARVQLAKASKNVKSRSSWCWWVLAIIVVA 258 (268)
Q Consensus 228 ~~a~~~l~~a~~~qk~~rk~~~~~~i~~~i~ 258 (268)
-=|--|..-|++.+++..+..|+.+++++++
T Consensus 75 vI~lmEm~l~rkkk~k~~~~~~~~~ii~~vl 105 (110)
T PF07457_consen 75 VIGLMEMALARKKKGKPTKILWWLFIILLVL 105 (110)
T ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Confidence 3456677777777777666666555444333
No 148
>PRK08147 flgK flagellar hook-associated protein FlgK; Validated
Probab=36.04 E-value=1.3e+02 Score=29.33 Aligned_cols=28 Identities=7% Similarity=0.124 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024426 55 HRQKLHNTRQRILQLVKDTSAKLKSVSE 82 (268)
Q Consensus 55 ~~~~i~~l~~~i~~l~~~~~~~l~~l~~ 82 (268)
...+|....++++.+.+++...=+++..
T Consensus 158 ~~~~i~~~V~~iN~l~~~Ia~LN~~I~~ 185 (547)
T PRK08147 158 VNTAIGSSVDQINNYAKQIASLNDQITR 185 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777666555555543
No 149
>PF11190 DUF2976: Protein of unknown function (DUF2976); InterPro: IPR021356 Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=35.84 E-value=1.7e+02 Score=21.12 Aligned_cols=45 Identities=11% Similarity=0.168 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHHHHHHHHHh
Q 024426 223 SAATTTHARVQLAKASKNVKS-RSSWCWWVLAIIVVALVILLLVFI 267 (268)
Q Consensus 223 a~~~v~~a~~~l~~a~~~qk~-~rk~~~~~~i~~~i~~~ii~~~l~ 267 (268)
|.....-|..-+....+.+.. +.+......+++.++++++.+|++
T Consensus 36 a~afi~Va~~~i~~y~eir~gK~~W~~fg~~~vVGvvLlv~viwLl 81 (87)
T PF11190_consen 36 AAAFIVVAKAAISTYNEIRDGKKTWGDFGATVVVGVVLLVFVIWLL 81 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHcCcccHHHhhhHHHHHHHHHHHHHHHH
Confidence 344444445555555555542 222234455566666666666653
No 150
>PF07432 Hc1: Histone H1-like protein Hc1; InterPro: IPR010886 This family consists of several bacterial histone H1-like Hc1 proteins, which are found in Chlamydiae and Bacteroidetes species. Chlamydiae are prokaryotic obligate intracellular parasites that undergo a biphasic life cycle involving an infectious, extracellular form known as elementary bodies and an intracellular, replicating form termed reticulate bodies. The gene coding for Hc1 is expressed only during the late stages of the chlamydial life cycle concomitant with the reorganisation of chlamydial reticulate bodies into elementary bodies, suggesting that the Hc1 protein plays a role in the condensation of chlamydial chromatin during intracellular differentiation [].; GO: 0003677 DNA binding
Probab=35.82 E-value=2e+02 Score=21.93 Aligned_cols=46 Identities=15% Similarity=0.254 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 024426 195 ANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQLAKASKN 240 (268)
Q Consensus 195 l~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a~~~l~~a~~~ 240 (268)
|.+.|..|..|++.=..-++.+|..---|...+..|..+|.+..+-
T Consensus 2 lKdt~~kmkeL~e~~~~D~~K~EKGNKAAGtRaRK~sleLeKLaKe 47 (123)
T PF07432_consen 2 LKDTFKKMKELLESFEADAEKAEKGNKAAGTRARKASLELEKLAKE 47 (123)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666444445568888888888899888888876553
No 151
>PHA03240 envelope glycoprotein M; Provisional
Probab=35.69 E-value=35 Score=28.87 Aligned_cols=11 Identities=9% Similarity=0.190 Sum_probs=5.1
Q ss_pred HHHHHHHHHHH
Q 024426 249 WWVLAIIVVAL 259 (268)
Q Consensus 249 ~~~~i~~~i~~ 259 (268)
-+.++|++||+
T Consensus 212 H~~WIiilIIi 222 (258)
T PHA03240 212 HIAWIFIAIII 222 (258)
T ss_pred hHhHHHHHHHH
Confidence 34455544444
No 152
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=35.59 E-value=1.5e+02 Score=20.48 Aligned_cols=13 Identities=0% Similarity=0.003 Sum_probs=5.0
Q ss_pred hHHHHHHHHHHHH
Q 024426 21 PSQAVAAGIFQIN 33 (268)
Q Consensus 21 ~~~~i~~~i~~i~ 33 (268)
.++++..+|....
T Consensus 9 ~~~~l~~Wl~~~e 21 (105)
T PF00435_consen 9 EADELLDWLQETE 21 (105)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333344443333
No 153
>PRK00720 tatA twin arginine translocase protein A; Provisional
Probab=35.29 E-value=38 Score=23.87 Aligned_cols=12 Identities=25% Similarity=0.575 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 024426 251 VLAIIVVALVIL 262 (268)
Q Consensus 251 ~~i~~~i~~~ii 262 (268)
+++|++|++++|
T Consensus 9 llIIlvIvlllF 20 (78)
T PRK00720 9 WLIVLAVVLLLF 20 (78)
T ss_pred HHHHHHHHHHHh
Confidence 333434444433
No 154
>PF06388 DUF1075: Protein of unknown function (DUF1075); InterPro: IPR009432 This family consists of several eukaryotic proteins of unknown function.
Probab=35.18 E-value=62 Score=25.70 Aligned_cols=23 Identities=4% Similarity=0.184 Sum_probs=16.6
Q ss_pred ccchhHHHHHHHHHHHHHHHHHH
Q 024426 243 SRSSWCWWVLAIIVVALVILLLV 265 (268)
Q Consensus 243 ~~rk~~~~~~i~~~i~~~ii~~~ 265 (268)
+.|=+.|++++++.|+..|+.++
T Consensus 90 k~RIkv~~~Mi~lTiiGc~~mv~ 112 (146)
T PF06388_consen 90 KARIKVCYIMIALTIIGCIAMVI 112 (146)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Confidence 44667788888888777777655
No 155
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=35.16 E-value=40 Score=29.24 Aligned_cols=17 Identities=6% Similarity=0.182 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024426 249 WWVLAIIVVALVILLLV 265 (268)
Q Consensus 249 ~~~~i~~~i~~~ii~~~ 265 (268)
++++++++++++++.+.
T Consensus 198 ~i~f~llgllfliiaig 214 (256)
T PF09788_consen 198 AIIFFLLGLLFLIIAIG 214 (256)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34443444444444443
No 156
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=35.11 E-value=81 Score=20.92 Aligned_cols=9 Identities=33% Similarity=0.423 Sum_probs=4.0
Q ss_pred HHHHHHHhh
Q 024426 234 LAKASKNVK 242 (268)
Q Consensus 234 l~~a~~~qk 242 (268)
|.+-++++|
T Consensus 33 l~ker~R~r 41 (64)
T COG4068 33 LNKERKRQR 41 (64)
T ss_pred HHHHHHHHH
Confidence 444444443
No 157
>PRK10884 SH3 domain-containing protein; Provisional
Probab=34.74 E-value=2.8e+02 Score=23.34 Aligned_cols=39 Identities=10% Similarity=0.115 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHH
Q 024426 197 EIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQLA 235 (268)
Q Consensus 197 ~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a~~~l~ 235 (268)
+--.+|..-+.+-...+..++..-......+..+..++.
T Consensus 118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~ 156 (206)
T PRK10884 118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVD 156 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444455455555555555555555543
No 158
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=34.03 E-value=53 Score=21.05 Aligned_cols=16 Identities=31% Similarity=0.285 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHh
Q 024426 252 LAIIVVALVILLLVFI 267 (268)
Q Consensus 252 ~i~~~i~~~ii~~~l~ 267 (268)
.++++.|++|+.++++
T Consensus 18 GLi~A~vlfi~Gi~ii 33 (50)
T PF02038_consen 18 GLIFAGVLFILGILII 33 (50)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHH
Confidence 3455555555555554
No 159
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=33.99 E-value=1.2e+02 Score=21.14 Aligned_cols=18 Identities=11% Similarity=0.381 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024426 187 EIEEQIGQANEIFKDLAV 204 (268)
Q Consensus 187 ~Ie~~i~el~~iF~dLa~ 204 (268)
+|++...--.++|..|..
T Consensus 8 ~L~R~~~~~~~~Y~~Ll~ 25 (82)
T PF13807_consen 8 RLQRDVEIKRELYETLLQ 25 (82)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555555556666544
No 160
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=33.95 E-value=2.9e+02 Score=24.69 Aligned_cols=60 Identities=12% Similarity=0.240 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024426 57 QKLHNTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKKVEDAKLARDFQTVLQEFQKIQQLA 118 (268)
Q Consensus 57 ~~i~~l~~~i~~l~~~~~~~l~~l~~~~~~~~~~~~~k~~~~~L~~~f~~~l~~fq~~q~~~ 118 (268)
++++.+...|.+....+...|++|.+.-.. . ...-...-..|.+++..++.+|+.++...
T Consensus 230 ~QM~s~~~nIe~~~~~~~~~Ldklh~eit~-~-LEkI~SREK~lNnqL~~l~q~fr~a~~~l 289 (384)
T KOG0972|consen 230 EQMNSMHKNIEQKVGNVGPYLDKLHKEITK-A-LEKIASREKSLNNQLASLMQKFRRATDTL 289 (384)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777777777777777777653110 0 00001112345666666666666665543
No 161
>PRK08471 flgK flagellar hook-associated protein FlgK; Validated
Probab=33.57 E-value=1.3e+02 Score=29.76 Aligned_cols=54 Identities=15% Similarity=0.155 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCcc--hhhHHHHHHHHHHHHHHHHH
Q 024426 55 HRQKLHNTRQRILQLVKDTSAKLKSVSESDRDTD--VNQNKKVEDAKLARDFQTVL 108 (268)
Q Consensus 55 ~~~~i~~l~~~i~~l~~~~~~~l~~l~~~~~~~~--~~~~~k~~~~~L~~~f~~~l 108 (268)
+..+|.....+++.+.+++...=+++......+. ...-..-+++.|..++..++
T Consensus 162 ~~~~i~~~V~~iN~ll~~Ia~LN~qI~~~~~~g~~~~~ndL~DqRD~ll~eLS~~v 217 (613)
T PRK08471 162 VNEELKVTVDEINSLGKQIAEINKQIKEVEAGKTLKHANELRDKRDELELTLSKLV 217 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHHHHHHHhhc
Confidence 4456677777777777666665555543221110 11123334555555554444
No 162
>PHA03231 glycoprotein BALF4; Provisional
Probab=33.45 E-value=1.4e+02 Score=30.67 Aligned_cols=20 Identities=10% Similarity=0.167 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024426 92 NKKVEDAKLARDFQTVLQEF 111 (268)
Q Consensus 92 ~~k~~~~~L~~~f~~~l~~f 111 (268)
+....++.|.....++|.+.
T Consensus 435 QLQFaYD~Lr~~IN~~L~~i 454 (829)
T PHA03231 435 QLQFAYDHLRDHINDMLGRL 454 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455677766655555444
No 163
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=33.22 E-value=4.5e+02 Score=25.27 Aligned_cols=53 Identities=17% Similarity=0.307 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHH
Q 024426 177 IIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTH 229 (268)
Q Consensus 177 ~i~eR~~eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~ 229 (268)
.+++=.+.+..|...+.++.+.+.+++.-+.+|...++.|..+++.....++.
T Consensus 432 ~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~i~~~~~~ 484 (553)
T PRK15048 432 LVESAGETMNNIVNAVTRVTDIMGEIASASDEQSRGIDQVALAVSEMDRVTQQ 484 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555667888999999999999999999999999999999988877776654
No 164
>PF04835 Pox_A9: A9 protein conserved region; InterPro: IPR006920 This entry represents a family of Chordopoxvirus A9 proteins. Chordopoxvirus belongs to the family Poxviridae and is the cause of vertebrate infections [].
Probab=33.01 E-value=98 Score=20.06 Aligned_cols=27 Identities=22% Similarity=0.436 Sum_probs=12.0
Q ss_pred hhccchhHHHH-HHHHHHHHHHHHHHHh
Q 024426 241 VKSRSSWCWWV-LAIIVVALVILLLVFI 267 (268)
Q Consensus 241 qk~~rk~~~~~-~i~~~i~~~ii~~~l~ 267 (268)
.|.+.=|..++ .++..|+.+++.++|+
T Consensus 17 ~R~NsF~fViik~vismimylilGi~L~ 44 (54)
T PF04835_consen 17 LRPNSFWFVIIKSVISMIMYLILGIALI 44 (54)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444333333 2344445555555554
No 165
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=32.92 E-value=2.2e+02 Score=26.19 Aligned_cols=62 Identities=13% Similarity=0.309 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024426 57 QKLHNTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKKVEDAKLARDFQTVLQEFQKIQQLASE 120 (268)
Q Consensus 57 ~~i~~l~~~i~~l~~~~~~~l~~l~~~~~~~~~~~~~k~~~~~L~~~f~~~l~~fq~~q~~~~~ 120 (268)
++++.+...|...+..++..|++|...-. ..-.++ ...-.-|.++|..++.+|+..+..+.+
T Consensus 223 eqm~~~~~~I~~~~~~~~~~L~kl~~~i~-~~lekI-~sREk~iN~qle~l~~eYr~~~~~ls~ 284 (359)
T PF10498_consen 223 EQMKQHKKSIESALPETKSQLDKLQQDIS-KTLEKI-ESREKYINNQLEPLIQEYRSAQDELSE 284 (359)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 56667777777777777777777765321 001111 111223555666666666666665544
No 166
>COG5278 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=32.91 E-value=3e+02 Score=23.20 Aligned_cols=14 Identities=29% Similarity=0.325 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHH
Q 024426 179 EEREHGLREIEEQI 192 (268)
Q Consensus 179 ~eR~~eI~~Ie~~i 192 (268)
.++++-+..++..+
T Consensus 104 p~~~~~l~~l~~~i 117 (207)
T COG5278 104 PELLESLDDLEPLI 117 (207)
T ss_pred HHHHHHHHHHHHHH
Confidence 34445555555443
No 167
>PF05227 CHASE3: CHASE3 domain; InterPro: IPR007891 CHASE3 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in bacteria. Specifically, CHASE3 domains are found in histidine kinases, adenylate cyclases, methyl-accepting chemotaxis proteins and predicted diguanylate cyclases/phosphodiesterases. Environmental factors that are recognised by CHASE3 domains are not known at this time [].; PDB: 3VA9_A.
Probab=32.82 E-value=2.1e+02 Score=21.36 Aligned_cols=22 Identities=18% Similarity=0.247 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024426 98 AKLARDFQTVLQEFQKIQQLAS 119 (268)
Q Consensus 98 ~~L~~~f~~~l~~fq~~q~~~~ 119 (268)
..+...+...+..|+..+....
T Consensus 111 ~~~~~~i~~~~~~~~~~e~~~l 132 (138)
T PF05227_consen 111 KQLMDQIRQLLEQIQAEEQRLL 132 (138)
T ss_dssp G-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777765543
No 168
>PHA02675 ORF104 fusion protein; Provisional
Probab=32.69 E-value=1.8e+02 Score=20.68 Aligned_cols=33 Identities=15% Similarity=0.290 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHH
Q 024426 195 ANEIFKDLAVLVHEQGVVIDDISSNIESSAATT 227 (268)
Q Consensus 195 l~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v 227 (268)
|-..|+.+..--..=++.|++.|.+.+..-.++
T Consensus 42 L~k~~~~i~~cC~~~~~~L~RLE~H~ETLRk~M 74 (90)
T PHA02675 42 LLDSYKTITDCCRETGARLDRLERHLETLREAL 74 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 336677777777888899999999888765544
No 169
>PRK02119 hypothetical protein; Provisional
Probab=32.52 E-value=1.7e+02 Score=20.19 Aligned_cols=47 Identities=21% Similarity=0.331 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHH
Q 024426 183 HGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTH 229 (268)
Q Consensus 183 ~eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~ 229 (268)
..|..||..+.-.-....+|+..|..|...||.....+......+..
T Consensus 9 ~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 9 NRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34666777777777777778888888888888888777776665544
No 170
>PHA02975 hypothetical protein; Provisional
Probab=32.42 E-value=54 Score=22.42 Aligned_cols=19 Identities=21% Similarity=0.495 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHhC
Q 024426 250 WVLAIIVVALVILLLVFIL 268 (268)
Q Consensus 250 ~~~i~~~i~~~ii~~~l~~ 268 (268)
+.+++++++++++++++.|
T Consensus 44 ~~~~ii~i~~v~~~~~~~f 62 (69)
T PHA02975 44 SIILIIFIIFITCIAVFTF 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455666555555555543
No 171
>PHA02414 hypothetical protein
Probab=32.27 E-value=2.1e+02 Score=21.08 Aligned_cols=45 Identities=18% Similarity=0.151 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHH
Q 024426 184 GLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTT 228 (268)
Q Consensus 184 eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~ 228 (268)
+-..|+..+.||..|..-|..=|.-+.|----|-|.++.-...+.
T Consensus 30 dn~eL~~av~ELRdivvslDKd~Av~sEKqshi~yQi~~Lee~i~ 74 (111)
T PHA02414 30 DNKELEVAVAELRDIVVSLDKDVAVNSEKQSHIYYQIERLEEKIS 74 (111)
T ss_pred chHHHHHHHHHHHHHHHHhhhHhhhhHHHhhHHHHHHHHHHHHHH
Confidence 667888999999999988888888888887788888877665554
No 172
>COG2857 CYT1 Cytochrome c1 [Energy production and conversion]
Probab=32.07 E-value=32 Score=29.88 Aligned_cols=47 Identities=17% Similarity=0.121 Sum_probs=32.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHH
Q 024426 218 SNIESSAATTTHARVQLAKASKNVKSRSSWCWWVLAIIVVALVILLL 264 (268)
Q Consensus 218 ~Nv~~a~~~v~~a~~~l~~a~~~qk~~rk~~~~~~i~~~i~~~ii~~ 264 (268)
-|...+...+++=..-|..+..-.+.-||++-+.++++++++.++..
T Consensus 193 ~~~~~tdq~~~dlvaYL~~~~ep~~~~rk~~g~~v~~fl~~~~~l~~ 239 (250)
T COG2857 193 GNPALTDQEVKDLVAYLKWAAEPEKEERKRLGFKVMIFLVVFTILAY 239 (250)
T ss_pred CChhhHHHHHHHHHHHHHHccCccHHHhhcCCeeehhHHHHHHHHHH
Confidence 36666777777777778888877777788876666666665555543
No 173
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=31.85 E-value=64 Score=21.41 Aligned_cols=20 Identities=10% Similarity=-0.024 Sum_probs=10.1
Q ss_pred hhccchhHHHHHHHHHHHHH
Q 024426 241 VKSRSSWCWWVLAIIVVALV 260 (268)
Q Consensus 241 qk~~rk~~~~~~i~~~i~~~ 260 (268)
++..+.-+|++++-++|++.
T Consensus 4 k~~~~mtriVLLISfiIlfg 23 (59)
T PF11119_consen 4 KKNSRMTRIVLLISFIILFG 23 (59)
T ss_pred cccchHHHHHHHHHHHHHHH
Confidence 34445555666555444444
No 174
>PHA03332 membrane glycoprotein; Provisional
Probab=31.77 E-value=4.8e+02 Score=27.75 Aligned_cols=61 Identities=8% Similarity=0.151 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcc---------cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 024426 23 QAVAAGIFQINTAVAAFRRLVDAIGTSKD---------TLDHRQKLHNTRQRILQLVKDTSAKLKSVSES 83 (268)
Q Consensus 23 ~~i~~~i~~i~~~v~~l~~~~~~l~t~~d---------~~~~~~~i~~l~~~i~~l~~~~~~~l~~l~~~ 83 (268)
.++++.|...+..+..+..-+..+|+.-+ -.+...+|.+|.++++..+-.+...++.|...
T Consensus 894 a~mksaIg~tNaAV~~lsDai~klGnti~kisatl~~nI~avNgRIs~Led~VN~r~~~v~~~intLA~q 963 (1328)
T PHA03332 894 AEMASKIGGLNARVDKTSDVITKLGDTIAKISATLDNNIRAVNGRVSDLEDQVNLRFLAVATNFNTLATQ 963 (1328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666666666666666655554211 12344566777777777777777777766653
No 175
>PF13124 DUF3963: Protein of unknown function (DUF3963)
Probab=31.76 E-value=65 Score=19.04 Aligned_cols=15 Identities=7% Similarity=-0.115 Sum_probs=9.0
Q ss_pred HhhccchhHHHHHHH
Q 024426 240 NVKSRSSWCWWVLAI 254 (268)
Q Consensus 240 ~qk~~rk~~~~~~i~ 254 (268)
.||--|...||+.+.
T Consensus 16 iqkwirnit~cfal~ 30 (40)
T PF13124_consen 16 IQKWIRNITFCFALL 30 (40)
T ss_pred HHHHHHHHHHHHHHH
Confidence 355556666776544
No 176
>PRK10856 cytoskeletal protein RodZ; Provisional
Probab=31.21 E-value=46 Score=30.23 Aligned_cols=25 Identities=8% Similarity=0.113 Sum_probs=10.1
Q ss_pred HHHhhccchhHHHHHHHHHHHHHHH
Q 024426 238 SKNVKSRSSWCWWVLAIIVVALVIL 262 (268)
Q Consensus 238 ~~~qk~~rk~~~~~~i~~~i~~~ii 262 (268)
.+++++.++.+++.+++++|+++++
T Consensus 104 ~~~~~~~~~~~~~~~lv~~vvl~l~ 128 (331)
T PRK10856 104 KRRKKRDGWLMTFTWLVLFVVIGLT 128 (331)
T ss_pred ccccccCCchHHHHHHHHHHHHHHH
Confidence 3334444444444444433333333
No 177
>PF01105 EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro: IPR009038 The GOLD (for Golgi dynamics) domain is a protein module found in several eukaryotic Golgi and lipid-traffic proteins. It is typically between 90 and 150 amino acids long. Most of the size difference observed in the GOLD-domain superfamily is traceable to a single large low-complexity insert that is seen in some versions of the domain. With the exception of the p24 proteins, which have a simple architecture with the GOLD domain as their only globular domain, all other GOLD-domain proteins contain additional conserved globular domains. In these proteins, the GOLD domain co-occurs with lipid-, sterol- or fatty acid-binding domains such as PH, CRAL-TRIO, FYVE oxysterol binding- and acyl CoA-binding domains, suggesting that these proteins may interact with membranes. The GOLD domain can also be found associated with a RUN domain, which may have a role in the interaction of various proteins with cytoskeletal filaments. The GOLD domain is predicted to mediate diverse protein-protein interactions []. A secondary structure prediction for the GOLD domain reveals that it is likely to adopt a compact all-beta-fold structure with six to seven strands. Most of the sequence conservation is centred on the hydrophobic cores that support these predicted strands. The predicted secondary-structure elements and the size of the conserved core of the domain suggests that it may form a beta- sandwich fold with the strands arranged in two beta sheets stacked on each other []. Some proteins known to contain a GOLD domain are listed below: Eukaryotic proteins of the p24 family. Animal Sec14-like proteins. They are involved in secretion. Human Golgi resident protein GCP60. It interacts with the Golgi integral membrane protein Giantin. Yeast oxysterol-binding protein homologue 3 (OSH3). ; GO: 0006810 transport, 0016021 integral to membrane; PDB: 1P23_A 1M23_A.
Probab=31.00 E-value=16 Score=29.05 Aligned_cols=20 Identities=20% Similarity=0.370 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024426 182 EHGLREIEEQIGQANEIFKD 201 (268)
Q Consensus 182 ~~eI~~Ie~~i~el~~iF~d 201 (268)
..++..++..+..|.....+
T Consensus 111 ~~~~~~~~~~l~~l~~~l~~ 130 (183)
T PF01105_consen 111 KEHLDPLEESLEKLESNLKE 130 (183)
T ss_dssp --------------------
T ss_pred hhhhhhhHHHHHHHHHHHHH
Confidence 44555565555554443333
No 178
>PF08653 DASH_Dam1: DASH complex subunit Dam1; InterPro: IPR013962 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=30.87 E-value=56 Score=21.65 Aligned_cols=28 Identities=0% Similarity=0.195 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 024426 21 PSQAVAAGIFQINTAVAAFRRLVDAIGT 48 (268)
Q Consensus 21 ~~~~i~~~i~~i~~~v~~l~~~~~~l~t 48 (268)
...++++.+..+..++..|+..+..|++
T Consensus 6 ~f~eL~D~~~~L~~n~~~L~~ihesL~~ 33 (58)
T PF08653_consen 6 QFAELSDSMETLDKNMEQLNQIHESLSD 33 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788888888888888888877654
No 179
>PHA03046 Hypothetical protein; Provisional
Probab=30.85 E-value=2.6e+02 Score=21.78 Aligned_cols=53 Identities=9% Similarity=0.184 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHH
Q 024426 175 EAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATT 227 (268)
Q Consensus 175 ~~~i~eR~~eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v 227 (268)
.++|..-.-+|+.+..-+.-|-.+|+....--..=|..|+++|.+.+..-.++
T Consensus 76 DsFI~~d~~~iKd~vlRL~vlEK~~~~~i~~c~~~~~~i~RLE~H~ETlRk~M 128 (142)
T PHA03046 76 DSFIHKDEMDIKDFVLRLLVLEKLFQLSIKRCKSLNNIIKRLENHTETVRKNM 128 (142)
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677788888888899999999988888899999999999988765444
No 180
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=30.82 E-value=1.8e+02 Score=19.89 Aligned_cols=29 Identities=34% Similarity=0.607 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024426 179 EEREHGLREIEEQIGQANEIFKDLAVLVH 207 (268)
Q Consensus 179 ~eR~~eI~~Ie~~i~el~~iF~dLa~lV~ 207 (268)
.+|...|..++..+.|..++..+|...|.
T Consensus 21 ~~r~~~i~~~e~~l~ea~~~l~qMe~E~~ 49 (79)
T PF05008_consen 21 EQRKSLIREIERDLDEAEELLKQMELEVR 49 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999988776
No 181
>KOG2546 consensus Abl interactor ABI-1, contains SH3 domain [Signal transduction mechanisms; Cytoskeleton]
Probab=30.80 E-value=2.4e+02 Score=26.61 Aligned_cols=50 Identities=12% Similarity=0.094 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHH
Q 024426 179 EEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTT 228 (268)
Q Consensus 179 ~eR~~eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~ 228 (268)
+.|..+.+.++.---.+|.|..+...|+..|+..|-..|.||+.....|.
T Consensus 51 etk~~ttQslasvaYqIN~la~~~l~mL~lQ~~~L~~mEs~vn~isq~V~ 100 (483)
T KOG2546|consen 51 ETKAYTTQSLASVAYQINTLAGHALRMLDLQAPQLRYMESQVNHISQTVD 100 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhe
Confidence 44666777888888899999999999999999999999999998877664
No 182
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=30.76 E-value=4.5e+02 Score=24.51 Aligned_cols=61 Identities=18% Similarity=0.263 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhh-HHHHHHHhhHHHHHHHHHHHHH
Q 024426 172 AFNEAIIEEREHGLREIEE-QIGQANEIFKDLAVLVHEQG-VVIDDISSNIESSAATTTHARV 232 (268)
Q Consensus 172 ~~~~~~i~eR~~eI~~Ie~-~i~el~~iF~dLa~lV~eQg-e~lD~Ie~Nv~~a~~~v~~a~~ 232 (268)
-|...-++|.-.+..++.+ -|..|.+=..-|..=|..|. |---+|+.+++.-..++.+-.-
T Consensus 305 RyR~erLEEqLNdlteLqQnEi~nLKqElasmeervaYQsyERaRdIqEalEscqtrisKlEl 367 (455)
T KOG3850|consen 305 RYRYERLEEQLNDLTELQQNEIANLKQELASMEERVAYQSYERARDIQEALESCQTRISKLEL 367 (455)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456666666666654 35555544445555566554 4667788888888877765433
No 183
>PF04888 SseC: Secretion system effector C (SseC) like family ; InterPro: IPR006972 SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella typhimurium. All these proteins are secreted by the type III secretion system []. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon [, ]. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon.; GO: 0009405 pathogenesis
Probab=30.73 E-value=1.9e+02 Score=25.52 Aligned_cols=23 Identities=13% Similarity=0.130 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 024426 221 ESSAATTTHARVQLAKASKNVKS 243 (268)
Q Consensus 221 ~~a~~~v~~a~~~l~~a~~~qk~ 243 (268)
.+...+-++-.+..++|.+-||.
T Consensus 33 ~~~~e~~~~~~e~~~kaeeaqK~ 55 (306)
T PF04888_consen 33 KKAEEKAEEIEEAQEKAEEAQKA 55 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444444444455555555554
No 184
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=30.72 E-value=2e+02 Score=20.51 Aligned_cols=46 Identities=15% Similarity=0.181 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc----cchhHHHHHHHHHHHHHHHHHH
Q 024426 220 IESSAATTTHARVQLAKASKNVKS----RSSWCWWVLAIIVVALVILLLV 265 (268)
Q Consensus 220 v~~a~~~v~~a~~~l~~a~~~qk~----~rk~~~~~~i~~~i~~~ii~~~ 265 (268)
+.++.+....-...|.++.+-=++ ...=+|+++..|++.+++++.|
T Consensus 38 L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~~~~~~f~~~v~yI 87 (92)
T PF03908_consen 38 LRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIFFAFLFFLLVVLYI 87 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 444444444444455555444332 2222555565544444444433
No 185
>PF02167 Cytochrom_C1: Cytochrome C1 family; InterPro: IPR002326 Cytochrome bc1 complex (ubiquinol:ferricytochrome c oxidoreductase) is found in mitochondria, photosynthetic bacteria and other prokaryotes. It is minimally composed of three subunits: cytochrome b, carrying a low- and a high-potential haem group; cytochrome c1 (cyt c1); and a high-potential Rieske iron-sulphur protein. The general function of the complex is electron transfer between two mobile redox carriers, ubiquinol and cytochrome c; the electron transfer is coupled with proton translocation across the membrane, thus generating proton-motive force in the form of an electrochemical potential that can drive ATP synthesis. In its structure and functions, the cytochrome bc1 complex bears extensive analogy to the cytochrome b6f complex of chloroplasts and cyanobacteria; cyt c1 plays an analogous role to cytochrome f, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding; PDB: 1P84_D 2IBZ_D 1EZV_D 3CX5_O 3CXH_O 1KB9_D 1KYO_D 1ZRT_Q 2CA4_B 2C9X_B ....
Probab=30.65 E-value=1.5e+02 Score=25.33 Aligned_cols=33 Identities=18% Similarity=0.032 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhhccchhHHHHHHHHHHHHHHHH
Q 024426 231 RVQLAKASKNVKSRSSWCWWVLAIIVVALVILL 263 (268)
Q Consensus 231 ~~~l~~a~~~qk~~rk~~~~~~i~~~i~~~ii~ 263 (268)
..-|.-|.+-.+-.|+++-+-++++++++++++
T Consensus 176 v~FL~w~aeP~~~~R~~~G~~vl~fL~il~~l~ 208 (219)
T PF02167_consen 176 VNFLAWAAEPEKDERKRMGLKVLGFLLILTVLA 208 (219)
T ss_dssp HHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555666666667776555555555555444
No 186
>COG3462 Predicted membrane protein [Function unknown]
Probab=30.43 E-value=58 Score=24.46 Aligned_cols=13 Identities=23% Similarity=0.767 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 024426 249 WWVLAIIVVALVI 261 (268)
Q Consensus 249 ~~~~i~~~i~~~i 261 (268)
|++.-|+.++.++
T Consensus 50 ~lImpI~~~vvli 62 (117)
T COG3462 50 WLIMPIFWAVVLI 62 (117)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 187
>PRK06945 flgK flagellar hook-associated protein FlgK; Validated
Probab=30.37 E-value=1.7e+02 Score=29.27 Aligned_cols=27 Identities=11% Similarity=0.135 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024426 55 HRQKLHNTRQRILQLVKDTSAKLKSVS 81 (268)
Q Consensus 55 ~~~~i~~l~~~i~~l~~~~~~~l~~l~ 81 (268)
...+|....++++.+.+++...=+++.
T Consensus 158 ~n~~I~~~V~~IN~l~~qIA~LN~~I~ 184 (651)
T PRK06945 158 VNTQLTSSVTQINSYTKQIAQLNDQIA 184 (651)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666667766666555544443
No 188
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=29.12 E-value=87 Score=27.21 Aligned_cols=38 Identities=11% Similarity=0.093 Sum_probs=23.9
Q ss_pred CCccccccCCCCCCCC--CCCchHHHHHHHHHHHHHHHHH
Q 024426 1 MSFQDLQNGSRSSPSS--SSKSPSQAVAAGIFQINTAVAA 38 (268)
Q Consensus 1 msf~~~~~~~~~~~~~--~f~~~~~~i~~~i~~i~~~v~~ 38 (268)
|+|+|+-+....+|+. ||..+-..-..+--.+-..+-.
T Consensus 133 ~~FAD~mRtlv~pgs~i~P~~EmK~~Nkenylrfa~KLG~ 172 (311)
T PF04642_consen 133 MPFADTMRTLVHPGSAIAPFDEMKEVNKENYLRFAGKLGK 172 (311)
T ss_pred ccHHHHHHhhcCCCCCCCChHHHhhhhhhhhhhhHHHHHH
Confidence 7899988877777766 4766655555544444444333
No 189
>PRK01833 tatA twin arginine translocase protein A; Provisional
Probab=29.08 E-value=56 Score=22.78 Aligned_cols=9 Identities=22% Similarity=0.604 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 024426 252 LAIIVVALV 260 (268)
Q Consensus 252 ~i~~~i~~~ 260 (268)
++|++|+++
T Consensus 10 liIl~i~ll 18 (74)
T PRK01833 10 LIIVAIIVL 18 (74)
T ss_pred HHHHHHHHH
Confidence 333333333
No 190
>PRK13848 conjugal transfer protein TraC; Provisional
Probab=28.99 E-value=2.3e+02 Score=20.65 Aligned_cols=60 Identities=12% Similarity=0.236 Sum_probs=39.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 024426 51 DTLDHRQKLHNTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKKVEDAKLARDFQTVLQEFQKI 114 (268)
Q Consensus 51 d~~~~~~~i~~l~~~i~~l~~~~~~~l~~l~~~~~~~~~~~~~k~~~~~L~~~f~~~l~~fq~~ 114 (268)
.+.+++.+|..|..+...+..+--.++-++--..+ .--...--..|...|..+-.+|+.-
T Consensus 4 ~~s~I~~eI~kLqe~lk~~e~keAERigRiAlKAG----LgeieI~d~eL~~aFeeiAaRFR~g 63 (98)
T PRK13848 4 PSSKIREEIAKLQEQLKQAETREAERIGRIALKAG----LGEIEIEEAELQAAFEELAKRFRGG 63 (98)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----ccccccCHHHHHHHHHHHHHHHhcC
Confidence 45678888888888888888877777777654322 0001111235777888888888754
No 191
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=28.73 E-value=2.8e+02 Score=21.46 Aligned_cols=37 Identities=19% Similarity=0.305 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhh
Q 024426 183 HGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSN 219 (268)
Q Consensus 183 ~eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~N 219 (268)
+++..+...+..++.-+..+..+|..=+.-|+.||+|
T Consensus 89 ~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie~~ 125 (126)
T PF07889_consen 89 DEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIEEK 125 (126)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444444444444444444444454444555555554
No 192
>PRK06799 flgK flagellar hook-associated protein FlgK; Validated
Probab=28.57 E-value=2.1e+02 Score=26.89 Aligned_cols=26 Identities=12% Similarity=0.184 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024426 56 RQKLHNTRQRILQLVKDTSAKLKSVS 81 (268)
Q Consensus 56 ~~~i~~l~~~i~~l~~~~~~~l~~l~ 81 (268)
..+|.....+++.+.+++...=+++.
T Consensus 163 ~~~i~~~V~~iN~ll~~Ia~LN~~I~ 188 (431)
T PRK06799 163 TEDIEAHVNEFNRLAKSLAEANKKIG 188 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666666555544444443
No 193
>PF14966 DNA_repr_REX1B: DNA repair REX1-B
Probab=28.46 E-value=1.3e+02 Score=21.95 Aligned_cols=27 Identities=7% Similarity=0.119 Sum_probs=19.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHH
Q 024426 18 SKSPSQAVAAGIFQINTAVAAFRRLVD 44 (268)
Q Consensus 18 f~~~~~~i~~~i~~i~~~v~~l~~~~~ 44 (268)
|..+|.+|......+...|..++....
T Consensus 38 y~~~~~~iT~~f~~~S~ei~~ie~~L~ 64 (97)
T PF14966_consen 38 YRQLCHEITQEFSAISKEILAIEAELR 64 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 777777777777777777777766543
No 194
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=28.15 E-value=3.9e+02 Score=23.00 Aligned_cols=92 Identities=12% Similarity=0.244 Sum_probs=55.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhccCCcchhhHHHHHHH
Q 024426 20 SPSQAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLHN-TRQRILQLVKDTSAKLKSVSESDRDTDVNQNKKVEDA 98 (268)
Q Consensus 20 ~~~~~i~~~i~~i~~~v~~l~~~~~~l~t~~d~~~~~~~i~~-l~~~i~~l~~~~~~~l~~l~~~~~~~~~~~~~k~~~~ 98 (268)
.+-.+|...+.++...+..+......+.++. ++.-+++++. |..+|.+| ..++..|+.+-.. +..+ -+..+.
T Consensus 5 KLQ~Eid~~lKkv~EG~~~F~~i~~K~~~~~-n~~QKEK~E~DLKkEIKKL-QR~RdQIK~W~~~----~diK-dk~~L~ 77 (233)
T PF04065_consen 5 KLQQEIDRTLKKVQEGVEEFDEIYEKVESAT-NQNQKEKLEADLKKEIKKL-QRLRDQIKTWLSS----NDIK-DKKKLL 77 (233)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CcchHHHHHHHHHHHHHHH-HHHHHHHHHHccC----cccc-cHHHHH
Confidence 3667899999999999999999988765422 2223444432 22222222 3455556665432 2222 233444
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024426 99 KLARDFQTVLQEFQKIQQLA 118 (268)
Q Consensus 99 ~L~~~f~~~l~~fq~~q~~~ 118 (268)
-..+.....|..|..+.+..
T Consensus 78 e~Rk~IE~~MErFK~vEkes 97 (233)
T PF04065_consen 78 ENRKLIEEQMERFKVVEKES 97 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 55566666888888887654
No 195
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=28.05 E-value=1.8e+02 Score=23.50 Aligned_cols=14 Identities=14% Similarity=-0.102 Sum_probs=5.8
Q ss_pred cchhHHHHHHHHHH
Q 024426 244 RSSWCWWVLAIIVV 257 (268)
Q Consensus 244 ~rk~~~~~~i~~~i 257 (268)
+|....+..++++|
T Consensus 154 yr~LGvl~G~~lvI 167 (170)
T PF09548_consen 154 YRSLGVLGGLFLVI 167 (170)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444433333
No 196
>PF13060 DUF3921: Protein of unknown function (DUF3921)
Probab=27.96 E-value=77 Score=20.10 Aligned_cols=24 Identities=25% Similarity=0.500 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHh
Q 024426 195 ANEIFKDLAVLVHEQGVVIDDISS 218 (268)
Q Consensus 195 l~~iF~dLa~lV~eQge~lD~Ie~ 218 (268)
++.-|.+|+..+.-||...|.|..
T Consensus 13 ih~tydelgkei~~~g~~~d~i~k 36 (58)
T PF13060_consen 13 IHRTYDELGKEIDLQGVIADEIQK 36 (58)
T ss_pred HHHhHHHHhHHhhhcchHHHHHHH
Confidence 566788999999999999988754
No 197
>PTZ00478 Sec superfamily; Provisional
Probab=27.86 E-value=2.3e+02 Score=20.16 Aligned_cols=29 Identities=10% Similarity=0.132 Sum_probs=20.3
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhh
Q 024426 214 DDISSNIESSAATTTHARVQLAKASKNVK 242 (268)
Q Consensus 214 D~Ie~Nv~~a~~~v~~a~~~l~~a~~~qk 242 (268)
|.+++-++...+.+..+.+=++++.+--+
T Consensus 14 ~~~~~v~~~~~eF~kds~r~vkrctKPdr 42 (81)
T PTZ00478 14 NPVGYVVSGVQEFANDSRRLIRKCTKPDA 42 (81)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 34677777888888888887776655433
No 198
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=27.83 E-value=1.2e+02 Score=24.80 Aligned_cols=29 Identities=10% Similarity=0.161 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhccchhHHHH
Q 024426 223 SAATTTHARVQLAKASKNVKSRSSWCWWV 251 (268)
Q Consensus 223 a~~~v~~a~~~l~~a~~~qk~~rk~~~~~ 251 (268)
-.-..+.|.++|.+..+......+|..++
T Consensus 80 ~~~~~~ea~~~L~~I~~~~~~y~~~~~~l 108 (193)
T PF06738_consen 80 GQLSLEEAIERLDEIDREPPRYPPWLVIL 108 (193)
T ss_pred CCCCHHHHHHHHHHHhhCCCCCCHHHHHH
Confidence 34455677888877777665666654443
No 199
>PF11026 DUF2721: Protein of unknown function (DUF2721); InterPro: IPR021279 This family is conserved in bacteria. The function is not known.
Probab=27.71 E-value=2.7e+02 Score=21.36 Aligned_cols=9 Identities=22% Similarity=0.261 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 024426 231 RVQLAKASK 239 (268)
Q Consensus 231 ~~~l~~a~~ 239 (268)
..|+.--.+
T Consensus 49 ~~el~~L~r 57 (130)
T PF11026_consen 49 RRELRILRR 57 (130)
T ss_pred HHHHHHHHH
Confidence 344433333
No 200
>PRK13895 conjugal transfer protein TraM; Provisional
Probab=27.68 E-value=3.1e+02 Score=21.69 Aligned_cols=9 Identities=11% Similarity=0.176 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 024426 226 TTTHARVQL 234 (268)
Q Consensus 226 ~v~~a~~~l 234 (268)
.+.....++
T Consensus 103 ~i~~~~~e~ 111 (144)
T PRK13895 103 EISASLAEL 111 (144)
T ss_pred HHHHHHHHH
Confidence 333333333
No 201
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=27.01 E-value=1.8e+02 Score=26.73 Aligned_cols=17 Identities=35% Similarity=0.577 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024426 99 KLARDFQTVLQEFQKIQ 115 (268)
Q Consensus 99 ~L~~~f~~~l~~fq~~q 115 (268)
.|..+|+.+...|+++|
T Consensus 76 eL~~~lQ~lS~df~~Lq 92 (379)
T PF11593_consen 76 ELYNKLQELSSDFQKLQ 92 (379)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 45566666666666665
No 202
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=26.82 E-value=4e+02 Score=22.67 Aligned_cols=61 Identities=15% Similarity=0.285 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024426 55 HRQKLHNTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKKVEDAKLARDFQTVLQEFQKIQQLA 118 (268)
Q Consensus 55 ~~~~i~~l~~~i~~l~~~~~~~l~~l~~~~~~~~~~~~~k~~~~~L~~~f~~~l~~fq~~q~~~ 118 (268)
+.++.+....+...+-++++..-+++..... ..-..+-|.+.+..++..++.+|++.|.+.
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~---~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQK---KVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555544443211 122333455566666666666666666554
No 203
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=26.52 E-value=2.5e+02 Score=20.18 Aligned_cols=57 Identities=9% Similarity=0.204 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024426 23 QAVAAGIFQINTAVAAFRRLVD-AIGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKS 79 (268)
Q Consensus 23 ~~i~~~i~~i~~~v~~l~~~~~-~l~t~~d~~~~~~~i~~l~~~i~~l~~~~~~~l~~ 79 (268)
..+...+..|...+..|+..+. .+....+...+...|..+..+-..+..++-....+
T Consensus 4 ~~le~al~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar 61 (89)
T PF13747_consen 4 YSLEAALTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEAR 61 (89)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHH
Confidence 4567778888888888888765 45555555566666666666655555544444333
No 204
>PF11298 DUF3099: Protein of unknown function (DUF3099); InterPro: IPR021449 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=26.46 E-value=97 Score=21.53 Aligned_cols=17 Identities=6% Similarity=0.139 Sum_probs=6.3
Q ss_pred chhHHHHHHHHHHHHHH
Q 024426 245 SSWCWWVLAIIVVALVI 261 (268)
Q Consensus 245 rk~~~~~~i~~~i~~~i 261 (268)
|++++.+++.+-+++++
T Consensus 16 R~r~Y~i~M~~Ri~~fv 32 (73)
T PF11298_consen 16 RRRRYLIMMGIRIPCFV 32 (73)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 205
>PRK11020 hypothetical protein; Provisional
Probab=26.23 E-value=2.9e+02 Score=20.93 Aligned_cols=45 Identities=16% Similarity=0.180 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCccc---HHHHHHHHHHHHHHHHH
Q 024426 25 VAAGIFQINTAVAAFRRLVDAIGTSKDT---LDHRQKLHNTRQRILQL 69 (268)
Q Consensus 25 i~~~i~~i~~~v~~l~~~~~~l~t~~d~---~~~~~~i~~l~~~i~~l 69 (268)
+...|+.++..+..+++.........|. ..+...++.++.+|..+
T Consensus 3 ~K~Eiq~L~drLD~~~~Klaaa~~rgd~~~i~qf~~E~~~l~k~I~~l 50 (118)
T PRK11020 3 EKNEIKRLSDRLDAIRHKLAAASLRGDAEKYAQFEKEKATLEAEIARL 50 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888877655444343 23344444444444433
No 206
>PF11657 Activator-TraM: Transcriptional activator TraM
Probab=26.19 E-value=3.3e+02 Score=21.56 Aligned_cols=14 Identities=14% Similarity=-0.024 Sum_probs=6.0
Q ss_pred HhhccchhHHHHHH
Q 024426 240 NVKSRSSWCWWVLA 253 (268)
Q Consensus 240 ~qk~~rk~~~~~~i 253 (268)
.-+++|+..++-++
T Consensus 114 ~~~~~r~~a~~nl~ 127 (144)
T PF11657_consen 114 LVREARKAAILNLV 127 (144)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444344
No 207
>PF13038 DUF3899: Domain of unknown function (DUF3899)
Probab=26.16 E-value=88 Score=22.32 Aligned_cols=21 Identities=14% Similarity=-0.010 Sum_probs=9.4
Q ss_pred HhhHHHHHHHhhHHHHHHHHH
Q 024426 208 EQGVVIDDISSNIESSAATTT 228 (268)
Q Consensus 208 eQge~lD~Ie~Nv~~a~~~v~ 228 (268)
-|+-..|..-+...+......
T Consensus 22 ~~~GfFd~~~ygfrr~~~~~~ 42 (92)
T PF13038_consen 22 FQSGFFDGFSYGFRRLFRQIK 42 (92)
T ss_pred HhcCchHHHHHHHHHHHHHhc
Confidence 344444554444444444333
No 208
>COG2966 Uncharacterized conserved protein [Function unknown]
Probab=26.15 E-value=1.3e+02 Score=26.24 Aligned_cols=34 Identities=21% Similarity=0.272 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Q 024426 220 IESSAATTTHARVQLAKASKNVKSRSSWCWWVLA 253 (268)
Q Consensus 220 v~~a~~~v~~a~~~l~~a~~~qk~~rk~~~~~~i 253 (268)
|++=...++.|.+.|.+-.+...+.++|.+.+..
T Consensus 99 v~~~~~~~e~a~~~l~~i~~~~~~y~~~l~~~~~ 132 (250)
T COG2966 99 VEHGRLDLEEAHKKLDEIQKQPLRYSRWLVLLMA 132 (250)
T ss_pred HHcCCCCHHHHHHHHHHhhhCccccccHHHHHHH
Confidence 4444556778888888887777788887766544
No 209
>PRK00846 hypothetical protein; Provisional
Probab=26.10 E-value=2.4e+02 Score=19.83 Aligned_cols=47 Identities=11% Similarity=0.111 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHH
Q 024426 184 GLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHA 230 (268)
Q Consensus 184 eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a 230 (268)
.|..||..+.-.-....+|+..|..|...||....-+....+.++..
T Consensus 14 Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 14 RLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 60 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35666666666666777777788888888888887777766665543
No 210
>PF00584 SecE: SecE/Sec61-gamma subunits of protein translocation complex; InterPro: IPR001901 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. SecE, part of the main SecYEG translocase complex, is ~106 residues in length, and spans the inner membrane of the Gram-negative bacterial envelope. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. In eukaryotes, the evolutionary related protein sec61-gamma plays a role in protein translocation through the endoplasmic reticulum; it is part of a trimeric complex that also consist of sec61-alpha and beta []. Both secE and sec61-gamma are small proteins of about 60 to 90 amino acids that contain a single transmembrane region at their C-terminal extremity (Escherichia coli secE is an exception, in that it possess an extra N-terminal segment of 60 residues that contains two additional transmembrane domains) [].; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0016020 membrane; PDB: 3J01_B 2WW9_B 2WWA_B 3DL8_C 2WWB_B 3DIN_G 2ZJS_E 2ZQP_E.
Probab=26.09 E-value=1e+02 Score=19.79 Aligned_cols=18 Identities=11% Similarity=0.076 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 024426 225 ATTTHARVQLAKASKNVK 242 (268)
Q Consensus 225 ~~v~~a~~~l~~a~~~qk 242 (268)
++......|+++..--.+
T Consensus 4 ~f~~~~~~Elkkv~WP~~ 21 (57)
T PF00584_consen 4 NFFREVKKELKKVTWPSR 21 (57)
T ss_dssp HHHHCHHHHHHHHHCCCT
T ss_pred HHHHHHHHHHHHhcCCCH
Confidence 455566677765554433
No 211
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=25.55 E-value=60 Score=19.78 Aligned_cols=10 Identities=20% Similarity=0.404 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 024426 257 VALVILLLVF 266 (268)
Q Consensus 257 i~~~ii~~~l 266 (268)
++++++++++
T Consensus 23 vI~~vl~~~l 32 (40)
T PF08693_consen 23 VIIIVLGAFL 32 (40)
T ss_pred HHHHHHHHHh
Confidence 3333343443
No 212
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=25.53 E-value=2.4e+02 Score=27.36 Aligned_cols=7 Identities=43% Similarity=0.895 Sum_probs=3.1
Q ss_pred HHHHHHH
Q 024426 108 LQEFQKI 114 (268)
Q Consensus 108 l~~fq~~ 114 (268)
+.+|+++
T Consensus 315 L~E~k~~ 321 (538)
T PF05781_consen 315 LEELKKL 321 (538)
T ss_pred HHHHHHH
Confidence 4444444
No 213
>PRK12714 flgK flagellar hook-associated protein FlgK; Provisional
Probab=25.51 E-value=2.5e+02 Score=27.91 Aligned_cols=27 Identities=7% Similarity=0.122 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024426 55 HRQKLHNTRQRILQLVKDTSAKLKSVS 81 (268)
Q Consensus 55 ~~~~i~~l~~~i~~l~~~~~~~l~~l~ 81 (268)
...+|.....+|+.+.++|...=+++.
T Consensus 157 ~n~~i~~~V~~IN~l~~~IA~LN~~I~ 183 (624)
T PRK12714 157 VNSGLTSSVDEVNRLTQQIAKINGTIG 183 (624)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666665555544443
No 214
>PF04888 SseC: Secretion system effector C (SseC) like family ; InterPro: IPR006972 SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella typhimurium. All these proteins are secreted by the type III secretion system []. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon [, ]. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon.; GO: 0009405 pathogenesis
Probab=25.23 E-value=3.1e+02 Score=24.21 Aligned_cols=29 Identities=7% Similarity=0.079 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccchhHH
Q 024426 221 ESSAATTTHARVQLAKASKNVKSRSSWCW 249 (268)
Q Consensus 221 ~~a~~~v~~a~~~l~~a~~~qk~~rk~~~ 249 (268)
+.....++.=.++++++.+.+.+.+|+.|
T Consensus 29 ~~~~~~~~e~~~~~~e~~~kaeeaqK~Gi 57 (306)
T PF04888_consen 29 EAQEKKAEEKAEEIEEAQEKAEEAQKAGI 57 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 33444455555555555555556666654
No 215
>PF06789 UPF0258: Uncharacterised protein family (UPF0258); InterPro: IPR009626 This is a group of proteins of unknown function.
Probab=25.18 E-value=16 Score=29.14 Aligned_cols=7 Identities=0% Similarity=-0.130 Sum_probs=2.7
Q ss_pred Hhhccch
Q 024426 240 NVKSRSS 246 (268)
Q Consensus 240 ~qk~~rk 246 (268)
.+.|..|
T Consensus 128 kr~K~Ck 134 (159)
T PF06789_consen 128 KRSKVCK 134 (159)
T ss_pred HHHHHHH
Confidence 3343333
No 216
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=25.14 E-value=3.9e+02 Score=23.90 Aligned_cols=35 Identities=23% Similarity=0.365 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHH
Q 024426 195 ANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTH 229 (268)
Q Consensus 195 l~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~ 229 (268)
.++||.-+..=|..-.+-|..|..-++.+...|++
T Consensus 34 ~~diF~rI~~Rv~~~~~~l~~i~~Ri~~~qaKi~~ 68 (297)
T PF11945_consen 34 SNDIFSRISARVERNRERLQAIQQRIEVAQAKIEK 68 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888888888888888877777777664
No 217
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=24.96 E-value=2.7e+02 Score=20.00 Aligned_cols=58 Identities=16% Similarity=0.245 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHH----HcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 024426 26 AAGIFQINTAVAAFRRLVD----AIGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSES 83 (268)
Q Consensus 26 ~~~i~~i~~~v~~l~~~~~----~l~t~~d~~~~~~~i~~l~~~i~~l~~~~~~~l~~l~~~ 83 (268)
...|..+...+.+.+.... .|.+..-+++-|..++.-...++..+..-...|+.|...
T Consensus 4 ~~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~LrkE 65 (85)
T PF15188_consen 4 AKEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRKE 65 (85)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 3445555555554444433 344444445556666655555666666666777777654
No 218
>PRK09759 small toxic polypeptide; Provisional
Probab=24.81 E-value=94 Score=19.93 Aligned_cols=14 Identities=0% Similarity=0.036 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q 024426 249 WWVLAIIVVALVIL 262 (268)
Q Consensus 249 ~~~~i~~~i~~~ii 262 (268)
|.+++|+.+++++.
T Consensus 9 ~liivCiTvL~f~~ 22 (50)
T PRK09759 9 SLIVICFTLLFFTW 22 (50)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444544444443
No 219
>PF09771 Tmemb_18A: Transmembrane protein 188; InterPro: IPR019168 The function of this family of transmembrane proteins has not, as yet, been determined.
Probab=24.36 E-value=3.3e+02 Score=21.05 Aligned_cols=41 Identities=12% Similarity=0.187 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHHHHHH
Q 024426 223 SAATTTHARVQLAKASKNVK-SRSSWCWWVLAIIVVALVILL 263 (268)
Q Consensus 223 a~~~v~~a~~~l~~a~~~qk-~~rk~~~~~~i~~~i~~~ii~ 263 (268)
|-++++.-.+.|.....+-+ ++.+|+++++++.++.++..-
T Consensus 5 ~ceDLkaFErRLtEvI~~l~Pst~RWRiiL~v~svct~v~A~ 46 (125)
T PF09771_consen 5 ACEDLKAFERRLTEVINSLQPSTTRWRIILVVVSVCTAVGAW 46 (125)
T ss_pred hHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHH
Confidence 45666777777777777755 677777776666555444433
No 220
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=24.05 E-value=6.1e+02 Score=23.90 Aligned_cols=55 Identities=13% Similarity=0.206 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHH
Q 024426 180 EREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQL 234 (268)
Q Consensus 180 eR~~eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a~~~l 234 (268)
+-..+|.+.++.|.+..+-+..|-..+.++.+-++.|+.-+-.+......-.+.+
T Consensus 42 q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I 96 (420)
T COG4942 42 QIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQI 96 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhH
Confidence 3345666666666666666666666666666666666666555555444444433
No 221
>TIGR02833 spore_III_AB stage III sporulation protein AB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage III sporulation protein AB.
Probab=24.01 E-value=2.3e+02 Score=22.95 Aligned_cols=17 Identities=24% Similarity=0.007 Sum_probs=7.8
Q ss_pred hccchhHHHHHHHHHHH
Q 024426 242 KSRSSWCWWVLAIIVVA 258 (268)
Q Consensus 242 k~~rk~~~~~~i~~~i~ 258 (268)
|=+|...++..++++|+
T Consensus 152 Kmy~~LGvl~Gl~lvIl 168 (170)
T TIGR02833 152 KMYRYLGVLVGLMIVLL 168 (170)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 33455555554444443
No 222
>KOG4025 consensus Putative apoptosis related protein [Function unknown]
Probab=24.00 E-value=4e+02 Score=21.74 Aligned_cols=19 Identities=26% Similarity=0.497 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024426 93 KKVEDAKLARDFQTVLQEF 111 (268)
Q Consensus 93 ~k~~~~~L~~~f~~~l~~f 111 (268)
+|-..-+.++.|.+.+..|
T Consensus 158 rKkEFVkYSK~FS~TLKtY 176 (207)
T KOG4025|consen 158 RKKEFVKYSKRFSNTLKTY 176 (207)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333445555555555544
No 223
>PF09716 ETRAMP: Malarial early transcribed membrane protein (ETRAMP); InterPro: IPR006389 These sequences represent a family of proteins from the malaria parasite Plasmodium falciparum, several of which have been shown to be expressed specifically in the ring stage as well as the rodent parasite Plasmodium yoelii []. A homologue from Plasmodium chabaudi was localized to the parasitophorous vacuole membrane []. Members have an initial hydrophobic, Phe/Tyr-rich stretch long enough to span the membrane, a highly charged region rich in Lys, a second putative transmembrane region, and a second highly charged, low complexity sequence region. Some members have up to 100 residues of additional C-terminal sequence. These genes have been shown to be found in the sub-telomeric regions of both Plasmodium falciparum and P. yoelii chromosomes.
Probab=23.94 E-value=87 Score=22.29 Aligned_cols=10 Identities=10% Similarity=-0.107 Sum_probs=4.0
Q ss_pred chhHHHHHHH
Q 024426 245 SSWCWWVLAI 254 (268)
Q Consensus 245 rk~~~~~~i~ 254 (268)
+++.+++-.+
T Consensus 52 ~kK~iiiS~i 61 (84)
T PF09716_consen 52 NKKKIIISTI 61 (84)
T ss_pred ccchhhHHHH
Confidence 4444444333
No 224
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=23.83 E-value=6.1e+02 Score=23.75 Aligned_cols=70 Identities=17% Similarity=0.201 Sum_probs=45.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 024426 166 LLDNEIAFNEAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQLAKASK 239 (268)
Q Consensus 166 ~~~~e~~~~~~~i~eR~~eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a~~~l~~a~~ 239 (268)
...+++..-.+..+.+..+|.+....|...++-...=+.-|.++.+.+.. .+.+.++.++-..+|+++..
T Consensus 214 ~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~----lEt~q~~leqeva~le~yyQ 283 (499)
T COG4372 214 ARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQR----LETAQARLEQEVAQLEAYYQ 283 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 33445454555566666777777777777666666666677777777776 55677777777777766554
No 225
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=23.71 E-value=2.5e+02 Score=19.29 Aligned_cols=12 Identities=25% Similarity=0.570 Sum_probs=6.5
Q ss_pred HHHHHhhHHHHH
Q 024426 213 IDDISSNIESSA 224 (268)
Q Consensus 213 lD~Ie~Nv~~a~ 224 (268)
||.||.-|+.+.
T Consensus 21 Ld~iEeKvEf~~ 32 (70)
T PF04210_consen 21 LDEIEEKVEFTN 32 (70)
T ss_pred HHHHHHHHHhHH
Confidence 555665555443
No 226
>PRK08307 stage III sporulation protein SpoAB; Provisional
Probab=23.65 E-value=2.2e+02 Score=23.11 Aligned_cols=17 Identities=18% Similarity=0.100 Sum_probs=7.7
Q ss_pred hccchhHHHHHHHHHHH
Q 024426 242 KSRSSWCWWVLAIIVVA 258 (268)
Q Consensus 242 k~~rk~~~~~~i~~~i~ 258 (268)
|=+|...++..++++|+
T Consensus 153 Kmy~~LGvl~Gl~lvIl 169 (171)
T PRK08307 153 KMYKYLGFLAGLLIVIL 169 (171)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 33455555444444443
No 227
>PRK09738 small toxic polypeptide; Provisional
Probab=23.58 E-value=92 Score=20.14 Aligned_cols=15 Identities=0% Similarity=0.106 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHH
Q 024426 248 CWWVLAIIVVALVIL 262 (268)
Q Consensus 248 ~~~~~i~~~i~~~ii 262 (268)
+|.+++|+.++++..
T Consensus 10 ~~livvCiTvL~f~~ 24 (52)
T PRK09738 10 WCVLIVCLTLLIFTY 24 (52)
T ss_pred hhHHHHHHHHHHHHH
Confidence 344444554444443
No 228
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.42 E-value=3e+02 Score=20.15 Aligned_cols=43 Identities=14% Similarity=0.309 Sum_probs=27.8
Q ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024426 36 VAAFRRLVDAIGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLK 78 (268)
Q Consensus 36 v~~l~~~~~~l~t~~d~~~~~~~i~~l~~~i~~l~~~~~~~l~ 78 (268)
...+.-+.+.++-+.+.++..+.+.+...++..++..+...|.
T Consensus 59 l~~~ivllkel~~~Aeseeake~irq~rq~~EklAg~lTkki~ 101 (103)
T COG4847 59 LLYLIVLLKELAVIAESEEAKESIRQVRQEVEKLAGDLTKKIE 101 (103)
T ss_pred HHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344555566666777777777777777777777666665554
No 229
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=22.84 E-value=3.1e+02 Score=19.98 Aligned_cols=60 Identities=13% Similarity=0.267 Sum_probs=37.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024426 52 TLDHRQKLHNTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKKVEDAKLARDFQTVLQEFQKIQ 115 (268)
Q Consensus 52 ~~~~~~~i~~l~~~i~~l~~~~~~~l~~l~~~~~~~~~~~~~k~~~~~L~~~f~~~l~~fq~~q 115 (268)
...++.+|..|..++..+.++--.++-.+--..+-. -..+--.-|..-|..+..+|++-.
T Consensus 4 ~s~I~~eIekLqe~lk~~e~keaERigr~AlKaGL~----eieI~d~eL~~~FeeIa~RFrk~~ 63 (92)
T PF07820_consen 4 SSKIREEIEKLQEQLKQAETKEAERIGRIALKAGLG----EIEISDAELQAAFEEIAARFRKGK 63 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc----cccCCHHHHHHHHHHHHHHHhccc
Confidence 356778888888888877777777776665432200 001111247777888888887553
No 230
>PF02532 PsbI: Photosystem II reaction centre I protein (PSII 4.8 kDa protein); InterPro: IPR003686 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbI, which is tightly associated with the D1/D2 heterodimer in PSII. The function of PsbI is unknown, but it may be involved in the assembly, dimerisation or stabilisation of PSII dimers [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_i 3ARC_I 3A0B_i 3BZ2_I 3PRQ_I 3KZI_I 3PRR_I 2AXT_i 4FBY_I 1S5L_i ....
Probab=22.81 E-value=1.7e+02 Score=17.23 Aligned_cols=14 Identities=29% Similarity=0.551 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 024426 249 WWVLAIIVVALVIL 262 (268)
Q Consensus 249 ~~~~i~~~i~~~ii 262 (268)
.+.++++.|-++|+
T Consensus 8 Vy~vV~ffv~LFif 21 (36)
T PF02532_consen 8 VYTVVIFFVSLFIF 21 (36)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred ehhhHHHHHHHHhc
Confidence 34444444444443
No 231
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=22.80 E-value=86 Score=27.77 Aligned_cols=31 Identities=3% Similarity=0.189 Sum_probs=18.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024426 51 DTLDHRQKLHNTRQRILQLVKDTSAKLKSVS 81 (268)
Q Consensus 51 d~~~~~~~i~~l~~~i~~l~~~~~~~l~~l~ 81 (268)
+++++++=++.+..+.-+...++.+..+++.
T Consensus 56 nDpEmK~iid~~n~eaikkyqqT~~~f~e~~ 86 (295)
T TIGR01478 56 NDPELKEIIDKLNEEAIKKYQETHDPYEQLQ 86 (295)
T ss_pred CcHHHHHHHHHHhHHHhhhhhhhcchHHHHH
Confidence 5678888888877744444444444444443
No 232
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.78 E-value=1.1e+02 Score=22.43 Aligned_cols=25 Identities=16% Similarity=0.094 Sum_probs=14.6
Q ss_pred hhccchhHHHHHHHHHHHHHHHHHH
Q 024426 241 VKSRSSWCWWVLAIIVVALVILLLV 265 (268)
Q Consensus 241 qk~~rk~~~~~~i~~~i~~~ii~~~ 265 (268)
||++-++.-.++.|.+||.+|...+
T Consensus 21 QkkaEr~~q~ilti~aiVg~i~Gf~ 45 (101)
T KOG4112|consen 21 QKKAERFQQLILTIGAIVGFIYGFA 45 (101)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444445666777777766554
No 233
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=22.78 E-value=67 Score=28.73 Aligned_cols=27 Identities=7% Similarity=0.198 Sum_probs=14.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024426 51 DTLDHRQKLHNTRQRILQLVKDTSAKL 77 (268)
Q Consensus 51 d~~~~~~~i~~l~~~i~~l~~~~~~~l 77 (268)
++|++++=+++.-.++.+.|++=..++
T Consensus 33 NDPeMK~Vme~F~rqTsQRF~EYdErm 59 (299)
T PF02009_consen 33 NDPEMKSVMENFDRQTSQRFEEYDERM 59 (299)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 455555555555555555555544444
No 234
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=22.77 E-value=2.3e+02 Score=18.58 Aligned_cols=14 Identities=7% Similarity=0.290 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHH
Q 024426 184 GLREIEEQIGQANE 197 (268)
Q Consensus 184 eI~~Ie~~i~el~~ 197 (268)
.|.+|...|.+|+.
T Consensus 4 kid~Ls~dVq~L~~ 17 (56)
T PF04728_consen 4 KIDQLSSDVQTLNS 17 (56)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 34455555555553
No 235
>PRK10573 type IV pilin biogenesis protein; Provisional
Probab=22.58 E-value=4.1e+02 Score=24.36 Aligned_cols=38 Identities=16% Similarity=0.121 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHH
Q 024426 188 IEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAA 225 (268)
Q Consensus 188 Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~ 225 (268)
+...+.....+|-++-.-...-||.=-+++.-...+.+
T Consensus 111 ls~al~~~~~~fp~~~~~li~~GE~sG~L~~~l~~la~ 148 (399)
T PRK10573 111 FSEALLQWPQVFPPLYQALIATGELTGKLDECCFQLAR 148 (399)
T ss_pred HHHHHHhCcCcCCHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 44455554445555433334445544444444444443
No 236
>PRK10404 hypothetical protein; Provisional
Probab=22.58 E-value=3.2e+02 Score=20.13 Aligned_cols=33 Identities=9% Similarity=0.180 Sum_probs=16.9
Q ss_pred HHHHHhhHHHHHHHHH--------HHHHHHHHHHHHhhccc
Q 024426 213 IDDISSNIESSAATTT--------HARVQLAKASKNVKSRS 245 (268)
Q Consensus 213 lD~Ie~Nv~~a~~~v~--------~a~~~l~~a~~~qk~~r 245 (268)
=++++..+..+...+. ++..-...+..|-+.+.
T Consensus 40 R~r~~~~L~~ar~~l~~~~~~~~~~~k~aa~~td~yV~e~P 80 (101)
T PRK10404 40 KARAEKALDDVKKRVSQASDSYYYRAKQAVYRADDYVHEKP 80 (101)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCc
Confidence 3555555555555333 33444445566665544
No 237
>PF10140 YukC: WXG100 protein secretion system (Wss), protein YukC; InterPro: IPR018778 Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This protein is designated YukC in Bacillus subtilis and EssB is Staphylococcus aureus. ; PDB: 4ANN_A.
Probab=22.48 E-value=40 Score=30.97 Aligned_cols=16 Identities=38% Similarity=0.430 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 024426 251 VLAIIVVALVILLLVF 266 (268)
Q Consensus 251 ~~i~~~i~~~ii~~~l 266 (268)
.+.+++|++++.++..
T Consensus 200 ~l~~l~v~l~~~~~Y~ 215 (359)
T PF10140_consen 200 GLSILLVLLLIPLGYL 215 (359)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444433
No 238
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=22.21 E-value=3.2e+02 Score=19.89 Aligned_cols=50 Identities=12% Similarity=0.213 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 024426 188 IEEQIGQANEIFKDLAVLVHEQ-GVVIDDISSNIESSAATTTHARVQLAKA 237 (268)
Q Consensus 188 Ie~~i~el~~iF~dLa~lV~eQ-ge~lD~Ie~Nv~~a~~~v~~a~~~l~~a 237 (268)
.+.--.+|..-|..|...+.+. ..+++.|+..-......+..-...+...
T Consensus 37 ~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~ 87 (127)
T smart00502 37 AADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQK 87 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444556778888888888754 5688889887666655555544444443
No 239
>PTZ00370 STEVOR; Provisional
Probab=22.16 E-value=90 Score=27.70 Aligned_cols=32 Identities=3% Similarity=0.177 Sum_probs=18.9
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024426 50 KDTLDHRQKLHNTRQRILQLVKDTSAKLKSVS 81 (268)
Q Consensus 50 ~d~~~~~~~i~~l~~~i~~l~~~~~~~l~~l~ 81 (268)
.+++++++=++.+..+.-+...++.+..+++.
T Consensus 54 dNDpemK~i~d~~n~eaikkyqqT~~~f~e~~ 85 (296)
T PTZ00370 54 HNDPELKEIIDKMNEEAIKKYQQTHDPYEQLK 85 (296)
T ss_pred CCcHHHHHHHHHHhHHHhhhhhhhcchHHHHH
Confidence 35778888888888744444444444444443
No 240
>PRK14758 hypothetical protein; Provisional
Probab=21.95 E-value=1.5e+02 Score=16.17 Aligned_cols=14 Identities=14% Similarity=0.363 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHH
Q 024426 251 VLAIIVVALVILLL 264 (268)
Q Consensus 251 ~~i~~~i~~~ii~~ 264 (268)
+++++.|++.++..
T Consensus 9 liLivlIlCalia~ 22 (27)
T PRK14758 9 FILIILILCALIAA 22 (27)
T ss_pred HHHHHHHHHHHHHH
Confidence 44445555555544
No 241
>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.78 E-value=4.4e+02 Score=22.18 Aligned_cols=19 Identities=21% Similarity=0.426 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024426 179 EEREHGLREIEEQIGQANE 197 (268)
Q Consensus 179 ~eR~~eI~~Ie~~i~el~~ 197 (268)
.+|.....+.|.++.+++.
T Consensus 127 ~~~~~~~~~mena~~~I~~ 145 (209)
T KOG1693|consen 127 SNRDTALTQMENAIVEIHR 145 (209)
T ss_pred cccchHHHHHHHHHHHHHH
Confidence 3455566666666666553
No 242
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=21.47 E-value=3e+02 Score=19.34 Aligned_cols=51 Identities=18% Similarity=0.382 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 024426 183 HGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQLAKA 237 (268)
Q Consensus 183 ~eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a~~~l~~a 237 (268)
+-+..++.. +..+-.+...++++..++++.++..++.+..-++. ..++..+
T Consensus 33 ~ti~~l~~~---~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~-v~~~g~~ 83 (90)
T PF06103_consen 33 KTIDTLQEQ---VDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEA-VADLGES 83 (90)
T ss_pred HHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHH
Confidence 344444443 44556788888888888888888877766554443 3334333
No 243
>cd07909 YciF YciF bacterial stress response protein, ferritin-like iron-binding domain. YciF is a bacterial protein of unknown function that is up-regulated when bacteria experience stress conditions, and is highly conserved in a broad range of bacterial species. YciF has a ferritin-like domain. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=21.44 E-value=4.2e+02 Score=20.97 Aligned_cols=59 Identities=8% Similarity=0.120 Sum_probs=41.2
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCcchhhHHHHHHHHHHHHHHHHHHHH
Q 024426 48 TSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKKVEDAKLARDFQTVLQEF 111 (268)
Q Consensus 48 t~~d~~~~~~~i~~l~~~i~~l~~~~~~~l~~l~~~~~~~~~~~~~k~~~~~L~~~f~~~l~~f 111 (268)
....+++|+..+.....++...+..+..-++.+...+.... --....|....+.++..+
T Consensus 27 ~~a~~peLk~~l~~H~~eT~~qi~rLe~if~~lg~~~~~~~-----c~~m~gli~e~~~~~~~~ 85 (147)
T cd07909 27 KAATSEELKEAFESHLEETEGQVERLEQIFESLGEKPEGKK-----CKAMEGLIKEAEELIEET 85 (147)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCc-----chHHHHHHHHHHHHHhcc
Confidence 34457789999999999999999999999998876543111 123445666666655555
No 244
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.41 E-value=3.8e+02 Score=20.45 Aligned_cols=61 Identities=13% Similarity=0.175 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC-CcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 024426 23 QAVAAGIFQINTAVAAFRRLVDAIGT-SKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSES 83 (268)
Q Consensus 23 ~~i~~~i~~i~~~v~~l~~~~~~l~t-~~d~~~~~~~i~~l~~~i~~l~~~~~~~l~~l~~~ 83 (268)
.+-...+..+...|..|+++.-.+|. .++...+=+.+++.-+.++...+.+-.+++.+.+.
T Consensus 32 ~ENee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~ 93 (118)
T KOG3385|consen 32 RENEEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARR 93 (118)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhc
Confidence 56778899999999999999776664 44555566777777777788887777788777664
No 245
>PF15106 TMEM156: TMEM156 protein family
Probab=21.38 E-value=83 Score=26.56 Aligned_cols=18 Identities=22% Similarity=0.538 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 024426 250 WVLAIIVVALVILLLVFI 267 (268)
Q Consensus 250 ~~~i~~~i~~~ii~~~l~ 267 (268)
|.+.+++.+++|++++++
T Consensus 176 ITWYvLVllVfiflii~i 193 (226)
T PF15106_consen 176 ITWYVLVLLVFIFLIILI 193 (226)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 445666666666666665
No 246
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=21.35 E-value=1.1e+02 Score=26.57 Aligned_cols=21 Identities=19% Similarity=0.823 Sum_probs=13.2
Q ss_pred chhHHHHHHHHHHHHHHHHHH
Q 024426 245 SSWCWWVLAIIVVALVILLLV 265 (268)
Q Consensus 245 rk~~~~~~i~~~i~~~ii~~~ 265 (268)
-+|.||++++++.++++..++
T Consensus 222 q~wLwwi~~vlG~ll~lr~~i 242 (262)
T KOG4812|consen 222 QYWLWWIFLVLGLLLFLRGFI 242 (262)
T ss_pred chHHHHHHHHHHHHHHHHHHH
Confidence 467777776666666555443
No 247
>PF09032 Siah-Interact_N: Siah interacting protein, N terminal ; InterPro: IPR015120 The N-terminal domain of Siah interacting protein (SIP) adopts a helical hairpin structure with a hydrophobic core stabilised by a classic knobs-and-holes arrangement of side chains contributed by the two amphipathic helices. Little is known about this domain's function, except that it is crucial for interactions with Siah. It has also been hypothesised that SIP can dimerise through this N-terminal domain []. ; PDB: 1YSM_A 2A26_C 2A25_B 1X5M_A.
Probab=21.14 E-value=3.1e+02 Score=19.35 Aligned_cols=24 Identities=8% Similarity=0.252 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCc
Q 024426 27 AGIFQINTAVAAFRRLVDAIGTSK 50 (268)
Q Consensus 27 ~~i~~i~~~v~~l~~~~~~l~t~~ 50 (268)
..|..++..+.+|+.+.....-++
T Consensus 3 ~~i~eL~~Dl~El~~Ll~~a~R~r 26 (79)
T PF09032_consen 3 EQIEELQLDLEELKSLLEQAKRKR 26 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred hHHHHHHHHHHHHHHHHHHhhHHH
Confidence 457888888888888887655443
No 248
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=20.93 E-value=95 Score=26.26 Aligned_cols=10 Identities=20% Similarity=0.471 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 024426 251 VLAIIVVALV 260 (268)
Q Consensus 251 ~~i~~~i~~~ 260 (268)
+++|++||++
T Consensus 130 mLIClIIIAV 139 (227)
T PF05399_consen 130 MLICLIIIAV 139 (227)
T ss_pred HHHHHHHHHH
Confidence 3444444433
No 249
>PTZ00046 rifin; Provisional
Probab=20.91 E-value=5.5e+02 Score=23.64 Aligned_cols=65 Identities=12% Similarity=0.254 Sum_probs=39.1
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 024426 50 KDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKKVE-DAKLARDFQTVLQEFQKIQQL 117 (268)
Q Consensus 50 ~d~~~~~~~i~~l~~~i~~l~~~~~~~l~~l~~~~~~~~~~~~~k~~-~~~L~~~f~~~l~~fq~~q~~ 117 (268)
.++++.+.-+++...++.+.|++=..++++=+......-+..++|.. .++|-++ +.++|-.+|.+
T Consensus 52 DNDPeMK~Vme~F~rqTsQRF~EYdERM~~kRqkcKeqCDKeIQKIILKDKlEKe---L~ekf~tL~Td 117 (358)
T PTZ00046 52 DNDPEMKSVMENFDRQTSQRFEEYDERMKEKRQKCKEQCDKEIQKIILKDKLEKE---LMEKFATLQTD 117 (358)
T ss_pred CCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH---HHhhhhhcccC
Confidence 35677777777777788888888777777655432211122334433 4666665 56666666543
No 250
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=20.89 E-value=6.6e+02 Score=23.09 Aligned_cols=26 Identities=12% Similarity=0.281 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024426 95 VEDAKLARDFQTVLQEFQKIQQLASE 120 (268)
Q Consensus 95 ~~~~~L~~~f~~~l~~fq~~q~~~~~ 120 (268)
+++..+..+|.....++..++..|+.
T Consensus 266 ~qle~l~~eYr~~~~~ls~~~~~y~~ 291 (359)
T PF10498_consen 266 NQLEPLIQEYRSAQDELSEVQEKYKQ 291 (359)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555543
No 251
>PF10864 DUF2663: Protein of unknown function (DUF2663); InterPro: IPR020210 This entry represents a group of uncharacterised transmembrane proteins.
Probab=20.87 E-value=1.8e+02 Score=22.59 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=14.3
Q ss_pred HHHHHHHhhccchhHHHHHHHHHH
Q 024426 234 LAKASKNVKSRSSWCWWVLAIIVV 257 (268)
Q Consensus 234 l~~a~~~qk~~rk~~~~~~i~~~i 257 (268)
=++..++.|+-+.+.|..++++++
T Consensus 10 K~K~e~l~k~~~~~~~~~l~~~~~ 33 (130)
T PF10864_consen 10 KEKWERLKKQHLFWQWLFLFSLFL 33 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666776667776665554433
No 252
>PRK08871 flgK flagellar hook-associated protein FlgK; Validated
Probab=20.81 E-value=3.5e+02 Score=26.96 Aligned_cols=27 Identities=19% Similarity=0.154 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024426 55 HRQKLHNTRQRILQLVKDTSAKLKSVS 81 (268)
Q Consensus 55 ~~~~i~~l~~~i~~l~~~~~~~l~~l~ 81 (268)
+..+|.....+++.+.++|-..=+++.
T Consensus 160 vn~qi~~~V~~IN~l~~qIA~LN~qI~ 186 (626)
T PRK08871 160 TNKKLDLGVERINQIALEIRDIHRLMM 186 (626)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666665555444443
No 253
>PRK10573 type IV pilin biogenesis protein; Provisional
Probab=20.74 E-value=4.8e+02 Score=23.93 Aligned_cols=8 Identities=25% Similarity=0.177 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 024426 227 TTHARVQL 234 (268)
Q Consensus 227 v~~a~~~l 234 (268)
...+-.++
T Consensus 139 L~~~l~~l 146 (399)
T PRK10573 139 LDECCFQL 146 (399)
T ss_pred HHHHHHHH
Confidence 33333333
No 254
>PF13396 PLDc_N: Phospholipase_D-nuclease N-terminal
Probab=20.46 E-value=98 Score=18.83 Aligned_cols=8 Identities=25% Similarity=0.725 Sum_probs=3.3
Q ss_pred chhHHHHH
Q 024426 245 SSWCWWVL 252 (268)
Q Consensus 245 rk~~~~~~ 252 (268)
.|..|+++
T Consensus 21 ~k~~W~~~ 28 (46)
T PF13396_consen 21 SKILWLIV 28 (46)
T ss_pred hhhHHHHH
Confidence 34444433
No 255
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=20.37 E-value=3.7e+02 Score=19.97 Aligned_cols=54 Identities=20% Similarity=0.267 Sum_probs=31.0
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 024426 183 HGLREIEEQIG--QANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQLAK 236 (268)
Q Consensus 183 ~eI~~Ie~~i~--el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a~~~l~~ 236 (268)
..+.+||..+. -.-+=+..|..-|.-|||.|.....-+......++.-...|..
T Consensus 37 q~L~kiE~~~~~l~qgeqI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~ 92 (102)
T PF01519_consen 37 QRLTKIENKLDQLAQGEQINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQS 92 (102)
T ss_dssp TB-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666655 3344455666677778888877776666544444444444433
No 256
>PRK11637 AmiB activator; Provisional
Probab=20.34 E-value=7e+02 Score=23.20 Aligned_cols=23 Identities=17% Similarity=0.143 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024426 22 SQAVAAGIFQINTAVAAFRRLVD 44 (268)
Q Consensus 22 ~~~i~~~i~~i~~~v~~l~~~~~ 44 (268)
.......+..+...+..+++...
T Consensus 42 ~~~~~~~l~~l~~qi~~~~~~i~ 64 (428)
T PRK11637 42 ASDNRDQLKSIQQDIAAKEKSVR 64 (428)
T ss_pred chhhHHHHHHHHHHHHHHHHHHH
Confidence 34555556666665555555444
No 257
>KOG4684 consensus Uncharacterized conserved protein, contains C4-type Zn-finger [General function prediction only]
Probab=20.20 E-value=1.2e+02 Score=25.70 Aligned_cols=11 Identities=9% Similarity=0.413 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 024426 254 IIVVALVILLL 264 (268)
Q Consensus 254 ~~~i~~~ii~~ 264 (268)
|+..+++|..+
T Consensus 215 ilal~~avta~ 225 (275)
T KOG4684|consen 215 ILALTVAVTAV 225 (275)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 258
>PF15168 TRIQK: Triple QxxK/R motif-containing protein family
Probab=20.09 E-value=3.2e+02 Score=19.14 Aligned_cols=15 Identities=27% Similarity=0.321 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q 024426 249 WWVLAIIVVALVILL 263 (268)
Q Consensus 249 ~~~~i~~~i~~~ii~ 263 (268)
|++..|+++++.+-.
T Consensus 53 l~l~ail~lL~a~Ya 67 (79)
T PF15168_consen 53 LVLAAILVLLLAFYA 67 (79)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333334444443333
No 259
>TIGR02908 CoxD_Bacillus cytochrome c oxidase, subunit IVB. This model represents a small clade of cytochrome oxidase subunit IV's found in the Bacilli.
Probab=20.01 E-value=2.4e+02 Score=21.30 Aligned_cols=30 Identities=10% Similarity=0.022 Sum_probs=14.8
Q ss_pred HHHHhhccchhHHHHHHHHHHHHHHHHHHH
Q 024426 237 ASKNVKSRSSWCWWVLAIIVVALVILLLVF 266 (268)
Q Consensus 237 a~~~qk~~rk~~~~~~i~~~i~~~ii~~~l 266 (268)
..+++++...|.+++..++.+++-++-+++
T Consensus 16 ~~~~~~~~~~k~yviGFiLSiiLT~I~F~~ 45 (110)
T TIGR02908 16 FQKAKNAEEMKKQIVTFALMIFLTLIAFFA 45 (110)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555555544443
No 260
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=20.00 E-value=86 Score=27.77 Aligned_cols=12 Identities=8% Similarity=0.324 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHH
Q 024426 107 VLQEFQKIQQLA 118 (268)
Q Consensus 107 ~l~~fq~~q~~~ 118 (268)
++++||+.++.|
T Consensus 71 aikkyqqT~~~f 82 (295)
T TIGR01478 71 AIKKYQETHDPY 82 (295)
T ss_pred HhhhhhhhcchH
Confidence 555555554443
Done!