Query 024426
Match_columns 268
No_of_seqs 153 out of 1403
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 08:02:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024426.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024426hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dn1_B Syntaxin 1A, syntaxin b 100.0 4E-39 1.4E-43 280.7 7.9 222 18-250 33-267 (267)
2 2xhe_B Syntaxin1; exocytosis, 100.0 1.7E-34 5.8E-39 253.4 6.9 215 18-245 46-279 (279)
3 3hd7_B Syntaxin-1A; membrane p 100.0 4.1E-30 1.4E-34 193.8 14.4 91 177-267 15-105 (109)
4 1jth_B Syntaxin 1A; coiled-coi 99.9 8.2E-27 2.8E-31 165.1 10.4 74 177-250 4-77 (77)
5 1fio_A SSO1 protein; four heli 99.9 2.9E-26 1E-30 191.0 6.4 182 18-210 7-196 (196)
6 2nps_B Syntaxin 13, vesicle-as 99.9 3.7E-25 1.3E-29 154.0 10.1 70 179-248 2-71 (71)
7 1sfc_B Protein (syntaxin 1A), 99.9 2.3E-23 7.9E-28 149.3 10.5 70 176-245 14-83 (83)
8 3b5n_B Protein SSO1; snare com 99.9 7.1E-23 2.4E-27 141.6 10.9 66 177-242 4-69 (69)
9 1gl2_B Syntaxin 7; membrane pr 99.9 1.3E-21 4.3E-26 133.6 8.4 63 177-239 3-65 (65)
10 1n7s_B Syntaxin 1A; neuronal s 99.9 3E-21 1E-25 133.1 9.7 63 177-239 6-68 (68)
11 3c98_B Syntaxin-1A; protein co 99.8 3.1E-21 1E-25 167.9 6.0 222 18-250 45-279 (279)
12 2dnx_A Syntaxin-12; snare, HAB 99.8 5.9E-18 2E-22 131.3 15.3 117 11-127 4-123 (130)
13 1s94_A S-syntaxin; three helix 99.5 9.8E-14 3.3E-18 113.6 9.0 107 18-124 41-155 (180)
14 1ez3_A Syntaxin-1A; three heli 99.5 1.2E-12 3.9E-17 101.1 13.1 109 18-126 10-126 (127)
15 1hs7_A Syntaxin VAM3; UP-and-D 99.1 1.3E-09 4.3E-14 79.1 11.8 88 23-125 6-94 (97)
16 2nps_D Syntaxin-6; vesicle fus 98.1 1.7E-05 5.9E-10 55.9 8.0 67 177-243 13-79 (82)
17 1gl2_D Syntaxin 8, vesicle tra 97.8 6.7E-05 2.3E-09 50.4 7.5 60 177-236 3-62 (65)
18 1n7s_D SNAP-25A; neuronal snar 97.8 0.00026 8.7E-09 47.6 9.7 57 180-236 7-63 (66)
19 1sfc_D Protein (SNAP-25B), pro 97.7 0.00043 1.5E-08 49.1 10.2 60 178-237 24-83 (87)
20 3hd7_A Vesicle-associated memb 97.7 0.0013 4.5E-08 47.0 12.6 81 183-267 5-88 (91)
21 1l4a_D S-SNAP25 fusion protein 97.4 0.00061 2.1E-08 48.3 7.7 57 180-236 27-83 (87)
22 3b5n_D Protein transport prote 97.4 0.0016 5.6E-08 43.3 9.2 56 180-235 7-62 (64)
23 3hd7_B Syntaxin-1A; membrane p 97.4 0.0084 2.9E-07 44.3 13.9 84 177-264 22-106 (109)
24 1nhl_A Synaptosomal-associated 96.6 0.016 5.6E-07 37.0 8.3 44 192-235 9-52 (54)
25 3b5n_C Protein transport prote 96.2 0.057 2E-06 36.4 9.1 41 201-241 30-70 (70)
26 1n7s_C SNAP-25A; neuronal snar 95.8 0.19 6.5E-06 34.6 10.6 56 181-236 21-76 (79)
27 2kog_A Vesicle-associated memb 95.1 0.0022 7.5E-08 48.2 -1.2 39 184-222 34-72 (119)
28 1l4a_C S-SNAP25 fusion protein 94.4 0.18 6.2E-06 35.1 7.3 51 184-234 28-78 (83)
29 1gl2_C VTI1B, vesicle transpor 89.9 2.8 9.5E-05 27.4 8.3 51 186-236 12-62 (65)
30 1sfc_A VAMP 2, protein (synapt 87.0 5.6 0.00019 28.2 8.9 42 184-225 31-72 (96)
31 3hd7_A Vesicle-associated memb 84.4 8.4 0.00029 26.9 12.4 16 247-262 71-86 (91)
32 2c5k_T Syntaxin TLG1, T-snare 80.6 13 0.00043 26.3 8.7 86 17-112 7-92 (95)
33 2kog_A Vesicle-associated memb 79.5 2.2 7.7E-05 31.6 4.3 22 244-265 93-114 (119)
34 1n7s_B Syntaxin 1A; neuronal s 78.6 11 0.00039 24.6 9.5 53 178-230 14-66 (68)
35 4dnd_A Syntaxin-10, SYN10; str 77.1 13 0.00045 27.8 8.0 29 17-45 28-56 (130)
36 1n7s_A Vesicle-associated memb 76.0 13 0.00044 23.9 8.1 43 183-225 4-46 (63)
37 2nps_B Syntaxin 13, vesicle-as 75.4 15 0.0005 24.2 8.9 62 178-239 8-69 (71)
38 2nps_C Vesicle transport throu 75.3 17 0.00057 24.8 9.5 60 182-241 18-77 (81)
39 3b5n_B Protein SSO1; snare com 74.7 15 0.00052 24.0 9.5 55 178-232 12-66 (69)
40 1gl2_B Syntaxin 7; membrane pr 72.3 17 0.00058 23.5 8.5 54 178-231 11-64 (65)
41 2nps_A VAMP-4, vesicle-associa 72.2 8.2 0.00028 25.8 5.3 39 185-223 10-48 (74)
42 3b5n_A Synaptobrevin homolog 1 71.0 17 0.0006 23.1 7.9 39 184-222 3-41 (61)
43 3n27_A Fusion glycoprotein F0, 69.2 19 0.00065 24.4 6.3 61 178-240 15-75 (80)
44 1jth_B Syntaxin 1A; coiled-coi 65.3 27 0.00094 23.2 10.0 62 178-239 12-73 (77)
45 2jqq_A Conserved oligomeric go 64.8 29 0.00099 27.7 7.6 55 60-123 130-184 (204)
46 3fym_A Putative uncharacterize 64.3 1.4 4.8E-05 32.9 0.0 11 244-254 102-112 (130)
47 1sfc_B Protein (syntaxin 1A), 59.5 38 0.0013 22.9 9.5 58 177-234 22-79 (83)
48 3swy_A Cyclic nucleotide-gated 55.5 28 0.00097 21.0 4.8 28 95-122 12-39 (46)
49 3ghg_A Fibrinogen alpha chain; 53.4 78 0.0027 29.3 9.4 25 95-119 131-155 (562)
50 1afo_A Glycophorin A; integral 49.1 14 0.00047 21.4 2.5 18 250-267 12-29 (40)
51 3efg_A Protein SLYX homolog; x 49.0 58 0.002 21.9 6.4 46 184-229 15-60 (78)
52 3swf_A CGMP-gated cation chann 45.0 42 0.0015 22.4 4.8 29 94-122 13-41 (74)
53 3t98_B Nucleoporin NUP58/NUP45 42.3 36 0.0012 23.8 4.4 29 18-46 10-38 (93)
54 3ajm_A Programmed cell death p 40.7 1.4E+02 0.0049 24.0 9.5 25 94-118 150-174 (213)
55 1m56_D Cytochrome C oxidase; m 36.3 25 0.00086 21.7 2.4 7 246-252 33-39 (51)
56 2ww9_B Protein transport prote 35.6 22 0.00076 24.2 2.3 29 212-240 14-42 (80)
57 1l4a_A Synaptobrevin; snare, s 35.5 98 0.0034 20.6 5.8 38 185-222 17-54 (80)
58 2beq_A E2 glycoprotein; viral 34.5 67 0.0023 18.5 4.4 31 186-216 2-32 (38)
59 3zx6_A HAMP, methyl-accepting 34.4 2.2E+02 0.0075 24.3 11.6 58 177-234 221-278 (341)
60 2zxe_G FXYD10, phospholemman-l 32.7 33 0.0011 22.8 2.6 17 252-268 23-39 (74)
61 1qu7_A Methyl-accepting chemot 32.3 2E+02 0.0068 23.2 9.7 55 178-232 142-196 (227)
62 2d4y_A HAP1, flagellar HOOK-as 31.6 55 0.0019 29.6 5.0 27 55-81 94-120 (463)
63 1lq7_A Alpha3W; three helix bu 30.9 96 0.0033 19.1 5.3 22 30-51 5-26 (67)
64 2jp3_A FXYD domain-containing 30.1 28 0.00095 22.7 1.9 15 253-267 22-36 (67)
65 1urq_A M-tomosyn isoform; tran 30.0 1.1E+02 0.0038 19.5 8.5 38 185-222 6-43 (63)
66 2jo1_A Phospholemman; FXYD1, N 28.8 30 0.001 22.8 1.9 15 253-267 21-35 (72)
67 3p8c_F ABL interactor 2; actin 28.6 2E+02 0.0068 22.1 8.3 46 182-227 53-98 (159)
68 3c98_B Syntaxin-1A; protein co 27.4 1.4E+02 0.0046 24.2 6.5 63 178-240 214-276 (279)
69 3f6n_A Virion-associated prote 27.3 1.3E+02 0.0045 22.0 5.3 25 24-48 10-34 (129)
70 3din_D Preprotein translocase 27.2 94 0.0032 19.9 4.2 36 223-258 4-39 (65)
71 1yod_A Water-solublized phosph 26.7 48 0.0017 17.6 2.1 8 249-256 15-22 (30)
72 1gl2_A Endobrevin; membrane pr 25.8 1.3E+02 0.0045 19.1 7.9 39 184-222 10-48 (65)
73 1pp9_D Cytochrome C-1, cytochr 25.5 1E+02 0.0035 25.5 5.1 38 227-264 183-220 (241)
74 1jcd_A Major outer membrane li 25.4 1.2E+02 0.0042 18.6 6.9 29 211-239 18-46 (52)
75 3cx5_D Cytochrome C1, heme pro 24.9 1E+02 0.0036 25.5 5.1 34 231-264 191-224 (248)
76 3kpe_A Fusion glycoprotein F0; 24.5 1.3E+02 0.0044 18.5 6.8 40 183-222 4-43 (51)
77 2yiu_B Cytochrome C1, heme pro 24.3 1.1E+02 0.0037 25.7 5.1 36 229-264 211-246 (263)
78 3uul_A Utrophin; spectrin repe 24.1 1.8E+02 0.006 20.0 7.7 27 54-80 82-108 (118)
79 1zrt_D Cytochrome C1; cytochro 23.3 1.2E+02 0.004 25.4 5.1 34 231-264 210-243 (258)
80 4dnd_A Syntaxin-10, SYN10; str 23.2 1.8E+02 0.0061 21.5 5.7 28 18-45 65-92 (130)
81 2qjy_B Cytochrome C1; cytochro 23.1 1.2E+02 0.004 25.5 5.1 33 232-264 213-245 (269)
82 1x4t_A Hypothetical protein LO 21.8 2.1E+02 0.007 19.9 5.4 59 20-81 18-79 (92)
83 2k48_A Nucleoprotein; viral pr 21.2 2.1E+02 0.0073 20.3 5.3 29 173-201 72-100 (107)
84 2qyw_A Vesicle transport throu 21.0 1.6E+02 0.0055 20.6 4.8 31 179-209 45-75 (102)
85 1deq_A Fibrinogen (alpha chain 20.7 4.4E+02 0.015 23.2 9.6 21 23-43 63-83 (390)
86 1svf_B Protein (fusion glycopr 20.6 1.3E+02 0.0043 17.2 3.4 23 217-239 11-33 (38)
87 4aj5_K Spindle and kinetochore 20.6 2.5E+02 0.0087 20.5 7.3 42 185-229 52-93 (123)
No 1
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=100.00 E-value=4e-39 Score=280.68 Aligned_cols=222 Identities=22% Similarity=0.230 Sum_probs=162.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHc-CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-------cCCcch
Q 024426 18 SKSPSQAVAAGIFQINTAVAAFRRLVDAI-GTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSES-------DRDTDV 89 (268)
Q Consensus 18 f~~~~~~i~~~i~~i~~~v~~l~~~~~~l-~t~~d~~~~~~~i~~l~~~i~~l~~~~~~~l~~l~~~-------~~~~~~ 89 (268)
|+..+++|+..|..|+.++.+|+++++.+ ++|.+.+.++.+|+.++.+++.+++.|+.+|+.|... +++++.
T Consensus 33 F~~~v~~I~~~I~~I~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~l~~~i~~~~~~i~~~Lk~l~~~~~~~~~~~~~~~e 112 (267)
T 1dn1_B 33 FFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSAD 112 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCHH
Confidence 99999999999999999999999999875 4566667899999999999999999999999999764 222345
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----cCCC-CCCCCCCCCCCCCCCCCCCCCCCchhhhhHHHHHHH
Q 024426 90 NQNKKVEDAKLARDFQTVLQEFQKIQQLASEREST----YSPS-VPPSSAPPSTTDTSGSGDFMGSENQPFLMEQKRQEL 164 (268)
Q Consensus 90 ~~~~k~~~~~L~~~f~~~l~~fq~~q~~~~~r~k~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ql 164 (268)
.|++++++.+|+++|++++..|+.+|..|+++++. +..+ .|.+ .+++.++++++|++..|.+ .++..+ ++.
T Consensus 113 ~Rirk~q~~~L~~~f~~~m~~yq~~Q~~y~e~~k~~i~Rq~~i~~~~~-tdeeie~~ie~g~~~~f~q-~~l~~~--~~~ 188 (267)
T 1dn1_B 113 LRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQLEITGRTT-TSEELEDMLESGNPAIFAS-GIIMDS--SIS 188 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHTCSSCTTTT-TCCCCS--HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccCCCC-CHHHHHHHHhCCcHHHHHH-HHHHhh--HHH
Confidence 69999999999999999999999999999988764 2223 3332 1222223344555554443 322211 111
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 024426 165 FLLDNEIAFNEAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQLAKASKNVKSR 244 (268)
Q Consensus 165 ~~~~~e~~~~~~~i~eR~~eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a~~~l~~a~~~qk~~ 244 (268)
......+++||++|.+||++|.|||+||.|||.||++||++||+||+||+.|..||+.|+.+|.+|.+|||++
T Consensus 189 -------~~~l~~i~~R~~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~~~v~~~~~~l~kA~~~q~~~ 261 (267)
T 1dn1_B 189 -------KQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKA 261 (267)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC-------------
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1122459999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHH
Q 024426 245 SSWCWW 250 (268)
Q Consensus 245 rk~~~~ 250 (268)
|||+||
T Consensus 262 rkk~~~ 267 (267)
T 1dn1_B 262 RRKKIM 267 (267)
T ss_dssp ------
T ss_pred cCcccC
Confidence 999996
No 2
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=100.00 E-value=1.7e-34 Score=253.42 Aligned_cols=215 Identities=20% Similarity=0.255 Sum_probs=151.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHH-HcCCCcccH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc----------
Q 024426 18 SKSPSQAVAAGIFQINTAVAAFRRLVD-AIGTSKDTL--DHRQKLHNTRQRILQLVKDTSAKLKSVSESD---------- 84 (268)
Q Consensus 18 f~~~~~~i~~~i~~i~~~v~~l~~~~~-~l~t~~d~~--~~~~~i~~l~~~i~~l~~~~~~~l~~l~~~~---------- 84 (268)
|+..+++|...|..|+.++..|.++++ .|++|.++. .++.+|+.++..|+.+++.|+..|+.|....
T Consensus 46 F~~~~~~I~~~I~~i~~~l~~L~~l~~~~l~t~~~~~~~~~~~~ie~l~~~i~~~~~~i~~~lk~l~~~~~~~~~~~~~~ 125 (279)
T 2xhe_B 46 FFNRVKRIRDNIEDIEQAIEQVAQLHTESLVAVSKEDRDRLNEKLQDTMARISALGNKIRADLKQIEKENKRAQQEGTFE 125 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 999999999999999999999999997 478887766 8999999999999999999999999998642
Q ss_pred -CCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC----CCCCCCCCCCCCCCCCCCCCCCCCCchhhhhH
Q 024426 85 -RDTD-VNQNKKVEDAKLARDFQTVLQEFQKIQQLASERESTYS----PSVPPSSAPPSTTDTSGSGDFMGSENQPFLME 158 (268)
Q Consensus 85 -~~~~-~~~~~k~~~~~L~~~f~~~l~~fq~~q~~~~~r~k~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 158 (268)
++++ ..+++++++.+|.++|++++.+|+.+|..|.++++... .+.+....+++.+.+++.|+...+.+
T Consensus 126 ~~~~~~e~r~~k~~~~~L~~~f~~~~~~Fq~~Q~~y~e~~k~~~~R~~~i~~~~~~~ee~~~~~e~g~~~~f~q------ 199 (279)
T 2xhe_B 126 DGTVSTDLRIRQSQHSSLSRKFVKVMTRYNDVQAENKRRYGENVARQCRVVEPSLSDDAIQKVIEHGTEGIFSG------ 199 (279)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCSSCCCCSSTTHHHHHHHC-------------
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhCCchHHHHH------
Confidence 1122 45899999999999999999999999999999886433 22221111111111222232222211
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 024426 159 QKRQELFLLDNEIAFNEAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQLAKAS 238 (268)
Q Consensus 159 ~~~~ql~~~~~e~~~~~~~i~eR~~eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a~~~l~~a~ 238 (268)
.+.. ..+..+ ..+++||++|.+||++|.||++||.|||.||++||++||+||+||+.|..||+.|+.+|.+|.
T Consensus 200 ---~~~~--~~~~~~--~~i~eR~~eI~~Ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~~~~~v~~~~~~l~kA~ 272 (279)
T 2xhe_B 200 ---MRLE--GAEAKL--NEIRDRHKDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVKKATEQVVQAR 272 (279)
T ss_dssp -----------------CTTTHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCSSTTCHHHHHHTCCCCC-----------
T ss_pred ---HHHH--HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 011122 359999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccc
Q 024426 239 KNVKSRS 245 (268)
Q Consensus 239 ~~qk~~r 245 (268)
+|||++|
T Consensus 273 ~~qk~~R 279 (279)
T 2xhe_B 273 HYQESAR 279 (279)
T ss_dssp -------
T ss_pred HHhHccC
Confidence 9999886
No 3
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=99.97 E-value=4.1e-30 Score=193.77 Aligned_cols=91 Identities=25% Similarity=0.306 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Q 024426 177 IIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQLAKASKNVKSRSSWCWWVLAIIV 256 (268)
Q Consensus 177 ~i~eR~~eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a~~~l~~a~~~qk~~rk~~~~~~i~~~ 256 (268)
.+++||++|.+||++|.||++||+|||.||++||++||+||+||++|..||++|+.+|.+|.+|||++|||+||+++|++
T Consensus 15 ~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rkk~~i~l~~~~ 94 (109)
T 3hd7_B 15 EIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIMIIICCV 94 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcceehHHHHH
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHh
Q 024426 257 VALVILLLVFI 267 (268)
Q Consensus 257 i~~~ii~~~l~ 267 (268)
|+++|+.+++.
T Consensus 95 i~~~i~~~~~~ 105 (109)
T 3hd7_B 95 ILGIIIASTIG 105 (109)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhc
Confidence 88777776664
No 4
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=99.94 E-value=8.2e-27 Score=165.09 Aligned_cols=74 Identities=28% Similarity=0.344 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhccchhHHH
Q 024426 177 IIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQLAKASKNVKSRSSWCWW 250 (268)
Q Consensus 177 ~i~eR~~eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a~~~l~~a~~~qk~~rk~~~~ 250 (268)
.+++||++|.+||++|.||++||.|||.||++||++||+||+||+.|..||+.|+.+|.+|.+||+++|||+||
T Consensus 4 ~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q~~~rkk~~i 77 (77)
T 1jth_B 4 EIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIM 77 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccC
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999987
No 5
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=99.92 E-value=2.9e-26 Score=191.03 Aligned_cols=182 Identities=15% Similarity=0.184 Sum_probs=135.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHH-cCCCccc--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCcchhhHHH
Q 024426 18 SKSPSQAVAAGIFQINTAVAAFRRLVDA-IGTSKDT--LDHRQKLHNTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKK 94 (268)
Q Consensus 18 f~~~~~~i~~~i~~i~~~v~~l~~~~~~-l~t~~d~--~~~~~~i~~l~~~i~~l~~~~~~~l~~l~~~~~~~~~~~~~k 94 (268)
|+..+++|+..|..|+.++..|+++++. ++++.+. ..++++|+.++.+|+.+++.|+..|+.|...+. ..++++
T Consensus 7 f~~~~~~i~~~i~~i~~~v~~L~~l~~~~l~~~~~~~~~~~~~~i~~l~~~i~~~~~~~~~~lk~l~~~~~---~~r~~k 83 (196)
T 1fio_A 7 FMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDGI---HDTNKQ 83 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---TCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch---hhhHHH
Confidence 9999999999999999999999999987 5555544 379999999999999999999999999987643 468999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-----CCCCCCCCCCCCCCCCCCCCCCCCCCchhhhhHHHHHHHHHHhh
Q 024426 95 VEDAKLARDFQTVLQEFQKIQQLASERESTY-----SPSVPPSSAPPSTTDTSGSGDFMGSENQPFLMEQKRQELFLLDN 169 (268)
Q Consensus 95 ~~~~~L~~~f~~~l~~fq~~q~~~~~r~k~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ql~~~~~ 169 (268)
+++.+|+++|++++.+|+.+|..|.+++|.. ..+.|.. .+++.+.+++.|+....+++.++..++++++
T Consensus 84 ~~~~~L~~~f~~~~~~fq~~Q~~~~~~~k~~~~rq~~i~~~~~-~~~e~~~~~~~~~~~~~f~~~~~~~~~~~~~----- 157 (196)
T 1fio_A 84 AQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQYMIIQPEA-TEDEVEAAISDVGGQQIFSQALLNANRRGEA----- 157 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTC-CHHHHHHHTSHHHHHHHHHHHTC------CH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-CHHHHHHHHHcCCchhHHHHHHHhccchHHH-----
Confidence 9999999999999999999999999887532 2233432 1111111222111111111122211111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024426 170 EIAFNEAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQG 210 (268)
Q Consensus 170 e~~~~~~~i~eR~~eI~~Ie~~i~el~~iF~dLa~lV~eQg 210 (268)
......|++||++|.+||++|.|||+||+|||.||++||
T Consensus 158 --~~~l~~i~eR~~eI~~IE~sI~EL~qiF~Dla~LV~~QG 196 (196)
T 1fio_A 158 --KTALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQ 196 (196)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCC
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 122345999999999999999999999999999999998
No 6
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=99.92 E-value=3.7e-25 Score=154.02 Aligned_cols=70 Identities=37% Similarity=0.530 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhccchhH
Q 024426 179 EEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQLAKASKNVKSRSSWC 248 (268)
Q Consensus 179 ~eR~~eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a~~~l~~a~~~qk~~rk~~ 248 (268)
++|+++|.+||++|.||++||.|||.||++||++||+||+||+.|..||+.|..+|.+|.+||+++|||+
T Consensus 2 ~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~rk~~ 71 (71)
T 2nps_B 2 SMRETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYYQKKSRKKM 71 (71)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 4799999999999999999999999999999999999999999999999999999999999999999975
No 7
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=99.90 E-value=2.3e-23 Score=149.28 Aligned_cols=70 Identities=30% Similarity=0.413 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 024426 176 AIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQLAKASKNVKSRS 245 (268)
Q Consensus 176 ~~i~eR~~eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a~~~l~~a~~~qk~~r 245 (268)
..+++||++|.+||++|.||++||.||+.||++||++||+||+||+.|..||++|..+|.+|.+|||++|
T Consensus 14 ~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~r 83 (83)
T 1sfc_B 14 SEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKAR 83 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHccC
Confidence 3499999999999999999999999999999999999999999999999999999999999999999876
No 8
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=99.89 E-value=7.1e-23 Score=141.59 Aligned_cols=66 Identities=24% Similarity=0.377 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhh
Q 024426 177 IIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQLAKASKNVK 242 (268)
Q Consensus 177 ~i~eR~~eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a~~~l~~a~~~qk 242 (268)
.+++|+++|.+||++|.||++||.||+.||++||++||+||+||+.|..||++|+.+|.+|.+|||
T Consensus 4 ~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qr 69 (69)
T 3b5n_B 4 EVQARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVKSAR 69 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 499999999999999999999999999999999999999999999999999999999999999986
No 9
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=99.86 E-value=1.3e-21 Score=133.63 Aligned_cols=63 Identities=44% Similarity=0.703 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 024426 177 IIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQLAKASK 239 (268)
Q Consensus 177 ~i~eR~~eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a~~~l~~a~~ 239 (268)
++++|+++|++||++|.||++||+||+.||++||++||+||+||+.|..||++|..+|.+|.+
T Consensus 3 ~i~eR~~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~k 65 (65)
T 1gl2_B 3 HMHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRAAN 65 (65)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 489999999999999999999999999999999999999999999999999999999999864
No 10
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=99.85 E-value=3e-21 Score=133.06 Aligned_cols=63 Identities=33% Similarity=0.471 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 024426 177 IIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQLAKASK 239 (268)
Q Consensus 177 ~i~eR~~eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a~~~l~~a~~ 239 (268)
.+++|+++|++||++|.||++||+||+.||++||++||+||+||+.|..||++|+.+|.+|.+
T Consensus 6 ~i~eR~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~k 68 (68)
T 1n7s_B 6 EIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVK 68 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 499999999999999999999999999999999999999999999999999999999999963
No 11
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=99.83 E-value=3.1e-21 Score=167.89 Aligned_cols=222 Identities=20% Similarity=0.206 Sum_probs=147.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHH-cCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-------CCcch
Q 024426 18 SKSPSQAVAAGIFQINTAVAAFRRLVDA-IGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSESD-------RDTDV 89 (268)
Q Consensus 18 f~~~~~~i~~~i~~i~~~v~~l~~~~~~-l~t~~d~~~~~~~i~~l~~~i~~l~~~~~~~l~~l~~~~-------~~~~~ 89 (268)
|+..+++|...|..|...+.+|.+++.. +.++.+.......++.+...++.++..+...++.+.... .....
T Consensus 45 f~~~ve~i~~~i~~i~~~v~el~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~i~~~~~~~~~i~~~~~~ 124 (279)
T 3c98_B 45 FFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSAD 124 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHH
Confidence 8899999999999999999999999875 677777778888999999999999999988887776532 12334
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----cCCCCCCCCCCCCCC-CCCCCCCCCCCCchhhhhHHHHHHH
Q 024426 90 NQNKKVEDAKLARDFQTVLQEFQKIQQLASEREST----YSPSVPPSSAPPSTT-DTSGSGDFMGSENQPFLMEQKRQEL 164 (268)
Q Consensus 90 ~~~~k~~~~~L~~~f~~~l~~fq~~q~~~~~r~k~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~ql 164 (268)
.+....+...|...|..+...|...+..|..+.+. .....+.++.+.... .....+. ..... .+.... ...
T Consensus 125 i~~~~~qtn~La~n~a~~~a~~~~~~~~~~~vva~evr~la~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~--~~~ 200 (279)
T 3c98_B 125 LRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQLEITGRTTTSEELEDMLESGNP-AIFAS-GIIMDS--SIS 200 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHSCCT-TSSTT-TSCSCS--SST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHhhhh-HHHHH-HHHHHH--HHH
Confidence 57788999999999999999999999988754332 111111110000000 0000000 00000 000000 000
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 024426 165 FLLDNEIAFNEAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQLAKASKNVKSR 244 (268)
Q Consensus 165 ~~~~~e~~~~~~~i~eR~~eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a~~~l~~a~~~qk~~ 244 (268)
......+++|+.++.+|+.+|.+|+++|.+|+.+|++||+++|+|++||+.+..+++.|..+|.+|.+||+++
T Consensus 201 -------~~~~~~i~~~~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~~~~~I~~nv~~~~~~v~~~~~el~~A~~~q~~~ 273 (279)
T 3c98_B 201 -------KQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKA 273 (279)
T ss_dssp -------THHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC-------------
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0112348999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHH
Q 024426 245 SSWCWW 250 (268)
Q Consensus 245 rk~~~~ 250 (268)
|||+||
T Consensus 274 Rkkk~i 279 (279)
T 3c98_B 274 RRKKIM 279 (279)
T ss_dssp ------
T ss_pred hCcCcC
Confidence 999986
No 12
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=5.9e-18 Score=131.30 Aligned_cols=117 Identities=26% Similarity=0.358 Sum_probs=106.3
Q ss_pred CCCCCCC-CCchHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC--Cc
Q 024426 11 RSSPSSS-SKSPSQAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSESDR--DT 87 (268)
Q Consensus 11 ~~~~~~~-f~~~~~~i~~~i~~i~~~v~~l~~~~~~l~t~~d~~~~~~~i~~l~~~i~~l~~~~~~~l~~l~~~~~--~~ 87 (268)
.+++++| |..+++.|+.+|++|+.+|..|+++++.|||++|++++|++|+.+...++.+++.+...|++|..... +.
T Consensus 4 ~~~~d~~ef~~l~~~is~~I~~In~~vs~l~r~v~~LGT~kDt~~LR~kl~~~~~~t~~l~k~ts~~lk~L~~~~~~~~~ 83 (130)
T 2dnx_A 4 GSSGQLRDFSSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNELLKELGSLPLPLST 83 (130)
T ss_dssp CCSCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSSH
T ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 3444555 99999999999999999999999999999999999999999999999999999999999999998752 23
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 024426 88 DVNQNKKVEDAKLARDFQTVLQEFQKIQQLASERESTYSP 127 (268)
Q Consensus 88 ~~~~~~k~~~~~L~~~f~~~l~~fq~~q~~~~~r~k~~~~ 127 (268)
.+++.++.+.++|.++|+.++++|+.+|+.+.+|+|....
T Consensus 84 ~~~r~~k~q~~KL~~dF~~~L~~FQ~~Qr~~aekek~~~~ 123 (130)
T 2dnx_A 84 SEQRQQRLQKERLMNDFSAALNNFQAVQRRVSEKEKESIA 123 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 4578999999999999999999999999999999987543
No 13
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=99.48 E-value=9.8e-14 Score=113.64 Aligned_cols=107 Identities=15% Similarity=0.197 Sum_probs=90.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHH-cCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-------CCcch
Q 024426 18 SKSPSQAVAAGIFQINTAVAAFRRLVDA-IGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSESD-------RDTDV 89 (268)
Q Consensus 18 f~~~~~~i~~~i~~i~~~v~~l~~~~~~-l~t~~d~~~~~~~i~~l~~~i~~l~~~~~~~l~~l~~~~-------~~~~~ 89 (268)
|+..+++|+..|..|..++..|++++.. |+++.+.+.++.+|+.++.+|+.+++.|+..|+.|...+ .+++.
T Consensus 41 F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~ 120 (180)
T 1s94_A 41 FFEQVEEIRAMIDKISDNVDAVKKKHSDILSAPQTDDQMKEELEELMTDIKRTANKVRGKLKTIELNIEQEEHSNKSSAD 120 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----CCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcHH
Confidence 9999999999999999999999999986 788888888999999999999999999999999998642 23456
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024426 90 NQNKKVEDAKLARDFQTVLQEFQKIQQLASEREST 124 (268)
Q Consensus 90 ~~~~k~~~~~L~~~f~~~l~~fq~~q~~~~~r~k~ 124 (268)
.|++++++..|.++|+++|..|+.+|..|++++|.
T Consensus 121 ~Rir~~q~~~L~~kf~~~m~~yq~~q~~y~~~~K~ 155 (180)
T 1s94_A 121 LRIRKTQYSTISRKFVEVMSDYNTTQIDYRDRCKA 155 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999987764
No 14
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=99.45 E-value=1.2e-12 Score=101.11 Aligned_cols=109 Identities=20% Similarity=0.226 Sum_probs=98.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHH-cCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-------CCcch
Q 024426 18 SKSPSQAVAAGIFQINTAVAAFRRLVDA-IGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSESD-------RDTDV 89 (268)
Q Consensus 18 f~~~~~~i~~~i~~i~~~v~~l~~~~~~-l~t~~d~~~~~~~i~~l~~~i~~l~~~~~~~l~~l~~~~-------~~~~~ 89 (268)
|+..|++|...|..|...+..|+.++.. |.++...+.++.+|+.++.+|+.+++.|+..|+.|...+ ++++.
T Consensus 10 F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~ 89 (127)
T 1ez3_A 10 FFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSAD 89 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcHH
Confidence 9999999999999999999999999874 777777788999999999999999999999999998642 23445
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 024426 90 NQNKKVEDAKLARDFQTVLQEFQKIQQLASERESTYS 126 (268)
Q Consensus 90 ~~~~k~~~~~L~~~f~~~l~~fq~~q~~~~~r~k~~~ 126 (268)
.|++++++..|.+.|+++|.+|+.+|..|+++++..+
T Consensus 90 ~Rir~~q~~~L~~kf~e~m~~y~~~q~~yre~~k~ri 126 (127)
T 1ez3_A 90 LRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRI 126 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 7999999999999999999999999999999987653
No 15
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=99.11 E-value=1.3e-09 Score=79.09 Aligned_cols=88 Identities=18% Similarity=0.276 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhccCCcchhhHHHHHHHHHH
Q 024426 23 QAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLH-NTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKKVEDAKLA 101 (268)
Q Consensus 23 ~~i~~~i~~i~~~v~~l~~~~~~l~t~~d~~~~~~~i~-~l~~~i~~l~~~~~~~l~~l~~~~~~~~~~~~~k~~~~~L~ 101 (268)
.+....|..+..++..|++++..|||.+|+.++|++|+ .++..++.+.+++. .+...+ +.++|.
T Consensus 6 ~d~~~li~t~s~niq~l~k~~~qlGTkrD~~~LR~~l~~~l~~~~~~L~k~~~----~l~~l~-----------qkeRL~ 70 (97)
T 1hs7_A 6 KELSNLIETFAEQSRVLEKECTKIGSKRDSKELRYKIETELIPNCTSVRDKIE----SNILIH-----------QNGKLS 70 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHTHHHHHHHHHHHHH----HSTHHH-----------HCHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHH----Hhcccc-----------hhhHHH
Confidence 45666777777777799999999999999999999999 99999999999888 332210 578999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhc
Q 024426 102 RDFQTVLQEFQKIQQLASERESTY 125 (268)
Q Consensus 102 ~~f~~~l~~fq~~q~~~~~r~k~~ 125 (268)
++|..+++.||.+|+.|.+|++.+
T Consensus 71 ~dF~~l~~~fQ~~qr~y~ek~~e~ 94 (97)
T 1hs7_A 71 ADFKNLKTKYQSLQQSYNQRKSLF 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999998875
No 16
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=98.07 E-value=1.7e-05 Score=55.86 Aligned_cols=67 Identities=21% Similarity=0.300 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 024426 177 IIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQLAKASKNVKS 243 (268)
Q Consensus 177 ~i~eR~~eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a~~~l~~a~~~qk~ 243 (268)
++++.++.+..|..+|..|+.|-.+|+..|.+|..+||.++..++.+...+..++..+.+..+..+.
T Consensus 13 ~~~eQD~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~~~~~ 79 (82)
T 2nps_D 13 MGRMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHMTSD 79 (82)
T ss_dssp -----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 4777788999999999999999999999999999999999999999999999999999888875443
No 17
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=97.85 E-value=6.7e-05 Score=50.37 Aligned_cols=60 Identities=17% Similarity=0.336 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 024426 177 IIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQLAK 236 (268)
Q Consensus 177 ~i~eR~~eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a~~~l~~ 236 (268)
++++-++.+..|..+|..|++|-.+|+..|..|..+||.++..++.+...+..++..+.+
T Consensus 3 ~~~eqD~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~ 62 (65)
T 1gl2_D 3 HMQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTL 62 (65)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366677899999999999999999999999999999999999999999999999887754
No 18
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=97.80 E-value=0.00026 Score=47.61 Aligned_cols=57 Identities=21% Similarity=0.289 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 024426 180 EREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQLAK 236 (268)
Q Consensus 180 eR~~eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a~~~l~~ 236 (268)
+-.+.+..|..+|..|+.|-.+|+..|..|..+||+|+..++.+...+..+++.+.+
T Consensus 7 eqD~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~~ 63 (66)
T 1n7s_D 7 EMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATK 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999999999999999999999999999999999887754
No 19
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=97.71 E-value=0.00043 Score=49.15 Aligned_cols=60 Identities=20% Similarity=0.261 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 024426 178 IEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQLAKA 237 (268)
Q Consensus 178 i~eR~~eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a~~~l~~a 237 (268)
.+|-++.+..|...|..|+.|-.+|+..|..|..+||+|+..++.+...+..+++.+.+-
T Consensus 24 e~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~l 83 (87)
T 1sfc_D 24 ENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKM 83 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 445667899999999999999999999999999999999999999999999998887653
No 20
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=97.69 E-value=0.0013 Score=47.02 Aligned_cols=81 Identities=11% Similarity=0.246 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHH-HHHhhc--cchhHHHHHHHHHHHH
Q 024426 183 HGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQLAKA-SKNVKS--RSSWCWWVLAIIVVAL 259 (268)
Q Consensus 183 ~eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a~~~l~~a-~~~qk~--~rk~~~~~~i~~~i~~ 259 (268)
+.+.++...+.|+..++.+==.-|-+-||-||.+++-.++-.... ..+.+. .+-.++ .++.++++++++++++
T Consensus 5 d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s----~~F~~~A~~l~rkmwwkn~K~~iii~~iv~~ 80 (91)
T 3hd7_A 5 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGA----SQFETSAAKLKRKYWWKNLKMMIILGVICAI 80 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788889999999999888889999999998877666544433 333333 333332 3333455555544444
Q ss_pred HHHHHHHh
Q 024426 260 VILLLVFI 267 (268)
Q Consensus 260 ~ii~~~l~ 267 (268)
+++++++.
T Consensus 81 il~ii~~~ 88 (91)
T 3hd7_A 81 ILIIIIVY 88 (91)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 44444443
No 21
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=97.42 E-value=0.00061 Score=48.34 Aligned_cols=57 Identities=21% Similarity=0.330 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 024426 180 EREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQLAK 236 (268)
Q Consensus 180 eR~~eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a~~~l~~ 236 (268)
+-++.+..|...+..|+.|-.+|+..|..|.++||+|+..++.+...+..+++.+.+
T Consensus 27 eqD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~k 83 (87)
T 1l4a_D 27 DMENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATK 83 (87)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345789999999999999999999999999999999999999999999999888765
No 22
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=97.41 E-value=0.0016 Score=43.29 Aligned_cols=56 Identities=13% Similarity=0.151 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHH
Q 024426 180 EREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQLA 235 (268)
Q Consensus 180 eR~~eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a~~~l~ 235 (268)
|-+..+.+|...+.-|+.|-.+|+..|..|.++||+|+..++.+...+..+++.|.
T Consensus 7 e~D~nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~Rl~ 62 (64)
T 3b5n_D 7 EIDRNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRLA 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34567889999999999999999999999999999999999999999999988775
No 23
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=97.39 E-value=0.0084 Score=44.25 Aligned_cols=84 Identities=11% Similarity=0.103 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH-HH
Q 024426 177 IIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQLAKASKNVKSRSSWCWWVLA-II 255 (268)
Q Consensus 177 ~i~eR~~eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a~~~l~~a~~~qk~~rk~~~~~~i-~~ 255 (268)
.+.+=++.|.+|..-..++..|..+=+.+|..=...+++...||+.+...+.+|.+.-+++++ ...+.+++++ ++
T Consensus 22 eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rk----k~~i~l~~~~i~~ 97 (109)
T 3hd7_B 22 EIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARR----KKIMIIICCVILG 97 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC----cceehHHHHHHHH
Confidence 477788899999999999999999999999999999999999999999999999876554444 3466554444 44
Q ss_pred HHHHHHHHH
Q 024426 256 VVALVILLL 264 (268)
Q Consensus 256 ~i~~~ii~~ 264 (268)
+|+.+++.+
T Consensus 98 ~i~~~~~~~ 106 (109)
T 3hd7_B 98 IIIASTIGG 106 (109)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHhcc
Confidence 444444433
No 24
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=96.65 E-value=0.016 Score=37.00 Aligned_cols=44 Identities=9% Similarity=0.110 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHH
Q 024426 192 IGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQLA 235 (268)
Q Consensus 192 i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a~~~l~ 235 (268)
+.|..++-......+.+|||.|++|+.+++....++..|.+.|.
T Consensus 9 ~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k~L~ 52 (54)
T 1nhl_A 9 AIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLT 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHHHHHHh
Confidence 44455555667778899999999999999999999999998874
No 25
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=96.15 E-value=0.057 Score=36.38 Aligned_cols=41 Identities=12% Similarity=0.160 Sum_probs=34.6
Q ss_pred HHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 024426 201 DLAVLVHEQGVVIDDISSNIESSAATTTHARVQLAKASKNV 241 (268)
Q Consensus 201 dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a~~~l~~a~~~q 241 (268)
.-..+..+|||.|++||.|++.+..+...|.++|..-..+|
T Consensus 30 ~Tl~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~Lk~~~ 70 (70)
T 3b5n_C 30 NTLGMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAELKKLQ 70 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 34447789999999999999999999999999987766543
No 26
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=95.76 E-value=0.19 Score=34.62 Aligned_cols=56 Identities=14% Similarity=0.209 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 024426 181 REHGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQLAK 236 (268)
Q Consensus 181 R~~eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a~~~l~~ 236 (268)
=-.-+++-.+-+.|-.++-.......+.||+.|++|+.++..+..++..|.+.|..
T Consensus 21 s~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L~~ 76 (79)
T 1n7s_C 21 SLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKD 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHHHhh
Confidence 33455566666677777888889999999999999999999999999999988864
No 27
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=95.12 E-value=0.0022 Score=48.19 Aligned_cols=39 Identities=13% Similarity=0.255 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHH
Q 024426 184 GLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIES 222 (268)
Q Consensus 184 eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~ 222 (268)
.+.++...+.|+..++.+=-.-|-+-||-||.+++-.++
T Consensus 34 ~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~ 72 (119)
T 2kog_A 34 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADA 72 (119)
T ss_dssp HHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 345556667777777777777788889988887766554
No 28
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=94.45 E-value=0.18 Score=35.06 Aligned_cols=51 Identities=20% Similarity=0.245 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHH
Q 024426 184 GLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQL 234 (268)
Q Consensus 184 eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a~~~l 234 (268)
..++.-+-+.+..+.-..-..+...||+.|++||.+++....+...|.+.|
T Consensus 28 STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~L 78 (83)
T 1l4a_C 28 STRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMKDAEKNL 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555556666777889999999999999999999888776655
No 29
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=89.87 E-value=2.8 Score=27.45 Aligned_cols=51 Identities=12% Similarity=0.130 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 024426 186 REIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQLAK 236 (268)
Q Consensus 186 ~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a~~~l~~ 236 (268)
..-.+-+.|--++=.++..-++.|+|.|.+...++..+..++..+.+-|..
T Consensus 12 ~~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s~k~L~~ 62 (65)
T 1gl2_C 12 ERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRS 62 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHHHHHHHh
Confidence 333444556666667777788999999999999999999999999987754
No 30
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=86.99 E-value=5.6 Score=28.17 Aligned_cols=42 Identities=14% Similarity=0.238 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHH
Q 024426 184 GLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAA 225 (268)
Q Consensus 184 eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~ 225 (268)
.|.++...+.|+..|+.+=-.-|-+-|+-||.+++-.+.-..
T Consensus 31 ~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~ 72 (96)
T 1sfc_A 31 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQA 72 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 566777788888888888888889999999888776555433
No 31
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=84.40 E-value=8.4 Score=26.90 Aligned_cols=16 Identities=6% Similarity=0.187 Sum_probs=6.0
Q ss_pred hHHHHHHHHHHHHHHH
Q 024426 247 WCWWVLAIIVVALVIL 262 (268)
Q Consensus 247 ~~~~~~i~~~i~~~ii 262 (268)
+.++.+++++++++|+
T Consensus 71 ~iii~~iv~~il~ii~ 86 (91)
T 3hd7_A 71 MIILGVICAIILIIII 86 (91)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 32
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=80.62 E-value=13 Score=26.26 Aligned_cols=86 Identities=7% Similarity=0.178 Sum_probs=50.0
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCcchhhHHHHH
Q 024426 17 SSKSPSQAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKKVE 96 (268)
Q Consensus 17 ~f~~~~~~i~~~i~~i~~~v~~l~~~~~~l~t~~d~~~~~~~i~~l~~~i~~l~~~~~~~l~~l~~~~~~~~~~~~~k~~ 96 (268)
||+....++...|..+...+.. ..++ .++..+..+.....++...+..+...+.-+.+. +..+...|+..
T Consensus 7 PF~~V~~D~~~ql~~l~~~~~~-------~~~~-~~~~~~~El~~~l~el~e~l~DL~~SI~i~e~~--~~~EI~~Rk~~ 76 (95)
T 2c5k_T 7 PFQQVVKDTKEQLNRINNYITR-------HNTA-GDDDQEEEIQDILKDVEETIVDLDRSIIVMKRD--ENEDVSGREAQ 76 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------TCCC---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTS--TTCCCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHH-------ccCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHH
Confidence 4899999999988888876443 2221 112333444444444444445555555554433 23445667777
Q ss_pred HHHHHHHHHHHHHHHH
Q 024426 97 DAKLARDFQTVLQEFQ 112 (268)
Q Consensus 97 ~~~L~~~f~~~l~~fq 112 (268)
+..+.+++..+-..++
T Consensus 77 v~~l~~~i~~lk~~~~ 92 (95)
T 2c5k_T 77 VKNIKQQLDALKLRFD 92 (95)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 7777777776666554
No 33
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=79.51 E-value=2.2 Score=31.56 Aligned_cols=22 Identities=5% Similarity=0.348 Sum_probs=9.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHH
Q 024426 244 RSSWCWWVLAIIVVALVILLLV 265 (268)
Q Consensus 244 ~rk~~~~~~i~~~i~~~ii~~~ 265 (268)
++++++++++++++++++++++
T Consensus 93 wkn~K~~iii~~iv~iii~iIi 114 (119)
T 2kog_A 93 WKNLKMMIILGVICAIILIIII 114 (119)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4455555554444444333333
No 34
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=78.62 E-value=11 Score=24.55 Aligned_cols=53 Identities=13% Similarity=0.235 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHH
Q 024426 178 IEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHA 230 (268)
Q Consensus 178 i~eR~~eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a 230 (268)
+.+=++.|..|..-..+|..|..+=+.+|..=...++....||+.+...+.+|
T Consensus 14 i~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA 66 (68)
T 1n7s_B 14 IIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKA 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445556666666666666666666666666666666666666666666655
No 35
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=77.14 E-value=13 Score=27.79 Aligned_cols=29 Identities=7% Similarity=-0.027 Sum_probs=22.2
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 024426 17 SSKSPSQAVAAGIFQINTAVAAFRRLVDA 45 (268)
Q Consensus 17 ~f~~~~~~i~~~i~~i~~~v~~l~~~~~~ 45 (268)
||+...++|...|..+......-.++...
T Consensus 28 PF~~Vk~EVq~sl~~l~~l~~~w~~l~~~ 56 (130)
T 4dnd_A 28 PFFVVRGEVQKAVNTARGLYQRWCELLQE 56 (130)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 59999999999999999887766655443
No 36
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=75.96 E-value=13 Score=23.86 Aligned_cols=43 Identities=14% Similarity=0.237 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHH
Q 024426 183 HGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAA 225 (268)
Q Consensus 183 ~eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~ 225 (268)
..|.++...+.|+..++.+=-.-|-+-|+-||.++.-.+.-..
T Consensus 4 d~l~~v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~ 46 (63)
T 1n7s_A 4 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQA 46 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3577888899999999999888999999999888766555433
No 37
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=75.38 E-value=15 Score=24.20 Aligned_cols=62 Identities=13% Similarity=0.201 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 024426 178 IEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQLAKASK 239 (268)
Q Consensus 178 i~eR~~eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a~~~l~~a~~ 239 (268)
+.+=+..|..|..-..+|..|..+=+.+|..=...++....||+.+...+.+|...-.++++
T Consensus 8 i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~rk 69 (71)
T 2nps_B 8 IQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYYQKKSRK 69 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 66666788888899999999999999999999999999999999999999999876655443
No 38
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=75.29 E-value=17 Score=24.76 Aligned_cols=60 Identities=8% Similarity=0.052 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 024426 182 EHGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQLAKASKNV 241 (268)
Q Consensus 182 ~~eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a~~~l~~a~~~q 241 (268)
..-+..-..-+.|-.+|=.++..-...|.|.|-+....+..+..++..+.+-|....++-
T Consensus 18 ~~~L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~l~~s~k~l~~M~rr~ 77 (81)
T 2nps_C 18 SRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRILTGMLRRI 77 (81)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Confidence 345666666777778888888888999999999999999999999999999998776653
No 39
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=74.68 E-value=15 Score=24.01 Aligned_cols=55 Identities=15% Similarity=0.188 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHH
Q 024426 178 IEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARV 232 (268)
Q Consensus 178 i~eR~~eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a~~ 232 (268)
+.+=++.|..|..-..+|..|..+=+.+|..=...++....||+.+...+.+|.+
T Consensus 12 i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~ 66 (69)
T 3b5n_B 12 LLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVK 66 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666666666666666666666666666666777776666666654
No 40
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=72.28 E-value=17 Score=23.49 Aligned_cols=54 Identities=9% Similarity=0.204 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHH
Q 024426 178 IEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHAR 231 (268)
Q Consensus 178 i~eR~~eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a~ 231 (268)
+..=++.|..|..-..+|..|..+=+.+|..=...++....||+.+...+.+|.
T Consensus 11 i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~ 64 (65)
T 1gl2_B 11 IRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRAA 64 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 444555666666667777777777777777777777777777777777766654
No 41
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=72.21 E-value=8.2 Score=25.78 Aligned_cols=39 Identities=18% Similarity=0.408 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHH
Q 024426 185 LREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESS 223 (268)
Q Consensus 185 I~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a 223 (268)
|.++...+.|+..|+.+==.-|-+-|+-||.+.+-.+.-
T Consensus 10 l~~vq~el~ev~~iM~~NI~~vL~RgekLd~L~~ks~~L 48 (74)
T 2nps_A 10 IKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESL 48 (74)
T ss_dssp SHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 445556666777777776667778888888776655443
No 42
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=70.96 E-value=17 Score=23.10 Aligned_cols=39 Identities=21% Similarity=0.313 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHH
Q 024426 184 GLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIES 222 (268)
Q Consensus 184 eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~ 222 (268)
.+.++...+.|+..|+.+=-.-|-+-|+-||.+..-.+.
T Consensus 3 ~l~~vq~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~ 41 (61)
T 3b5n_A 3 RTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADN 41 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 467788889999999988888889999999888765554
No 43
>3n27_A Fusion glycoprotein F0, linker, fusion glycoprote; fusion protein, chimera protein, fusion inhibitor, antivirus viral protein; HET: CIT; 1.80A {Hendravirus}
Probab=69.17 E-value=19 Score=24.37 Aligned_cols=61 Identities=13% Similarity=0.255 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 024426 178 IEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQLAKASKN 240 (268)
Q Consensus 178 i~eR~~eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a~~~l~~a~~~ 240 (268)
+++-++.|.+|-.+...+--...-+-.-|..+|.+ .|.-|+..|...++.....+.+++..
T Consensus 15 Iq~TN~AV~eL~~a~~~t~iAIqaIQd~IN~~~~~--dis~~l~~a~~~l~~sk~~~~~~~~~ 75 (80)
T 3n27_A 15 IESTNEAVVKLQETAEKTVYVLTALQDYSGGSGGI--DISIELNKAKSDLEESKEWIRRSNQK 75 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCC-----CH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc--chhhhHhHHHhhHHHHHHHHHHHHHH
Confidence 66677777777777777777777777777777765 57778889999999999999887653
No 44
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=65.27 E-value=27 Score=23.22 Aligned_cols=62 Identities=15% Similarity=0.213 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 024426 178 IEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQLAKASK 239 (268)
Q Consensus 178 i~eR~~eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a~~~l~~a~~ 239 (268)
+.+=++.|..|..-..+|..|..+=+.+|..=...++....||+.+...+.+|.+.-.++++
T Consensus 12 i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q~~~rk 73 (77)
T 1jth_B 12 IIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARR 73 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 66666788888888888888888888888888888888888888888888888876655544
No 45
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=64.79 E-value=29 Score=27.67 Aligned_cols=55 Identities=24% Similarity=0.350 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024426 60 HNTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKKVEDAKLARDFQTVLQEFQKIQQLASERES 123 (268)
Q Consensus 60 ~~l~~~i~~l~~~~~~~l~~l~~~~~~~~~~~~~k~~~~~L~~~f~~~l~~fq~~q~~~~~r~k 123 (268)
..++.++-+++..+...+..+...+ +| -+..+.++|+.++.+||-.-....+|+-
T Consensus 130 ~~l~~qL~~L~~~~~~ll~~l~dl~--Sp-------~l~h~RN~yq~i~q~Fqi~lk~LtdkCl 184 (204)
T 2jqq_A 130 SGLIEQLYKLITASRRILESCADSN--SP-------YIHHLRNDYQDLLQEFQISLKILTEKCL 184 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSCC--CH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC--cH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777778888888888887653 22 2345778899999999988877777764
No 46
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=64.28 E-value=1.4 Score=32.94 Aligned_cols=11 Identities=0% Similarity=-0.121 Sum_probs=0.0
Q ss_pred cchhHHHHHHH
Q 024426 244 RSSWCWWVLAI 254 (268)
Q Consensus 244 ~rk~~~~~~i~ 254 (268)
.+.+.|.++++
T Consensus 102 ~~~~~~~~i~~ 112 (130)
T 3fym_A 102 SKEPIQLLVIM 112 (130)
T ss_dssp -----------
T ss_pred hhhHHHHHHHH
Confidence 34444444433
No 47
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=59.48 E-value=38 Score=22.91 Aligned_cols=58 Identities=12% Similarity=0.160 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHH
Q 024426 177 IIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQL 234 (268)
Q Consensus 177 ~i~eR~~eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a~~~l 234 (268)
.+.+=++.|..|..-..+|..|..+=+.+|..=...++....||+.+...+.+|.+.-
T Consensus 22 ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~q 79 (83)
T 1sfc_B 22 EIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQ 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3666677888888888888888888888888888888888888888888888887643
No 48
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=55.48 E-value=28 Score=21.00 Aligned_cols=28 Identities=21% Similarity=0.258 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024426 95 VEDAKLARDFQTVLQEFQKIQQLASERE 122 (268)
Q Consensus 95 ~~~~~L~~~f~~~l~~fq~~q~~~~~r~ 122 (268)
..++.|..+|..++.+|...|...+.|.
T Consensus 12 ~~ld~LqTr~ArLlae~~ssq~KlKqRi 39 (46)
T 3swy_A 12 SSLDTLQTRFARLLAEYNATQMKMKQRL 39 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999999999887764
No 49
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=53.37 E-value=78 Score=29.27 Aligned_cols=25 Identities=8% Similarity=0.161 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024426 95 VEDAKLARDFQTVLQEFQKIQQLAS 119 (268)
Q Consensus 95 ~~~~~L~~~f~~~l~~fq~~q~~~~ 119 (268)
.++..|.+.+.++..+-|+++..+.
T Consensus 131 snIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 131 QHIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777777777776654
No 50
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=49.11 E-value=14 Score=21.45 Aligned_cols=18 Identities=17% Similarity=0.176 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 024426 250 WVLAIIVVALVILLLVFI 267 (268)
Q Consensus 250 ~~~i~~~i~~~ii~~~l~ 267 (268)
+.++|+++++.|+..+++
T Consensus 12 i~lII~~vmaGiIG~Ill 29 (40)
T 1afo_A 12 ITLIIFGVMAGVIGTILL 29 (40)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 445555666666555543
No 51
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=49.04 E-value=58 Score=21.89 Aligned_cols=46 Identities=11% Similarity=0.112 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHH
Q 024426 184 GLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTH 229 (268)
Q Consensus 184 eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~ 229 (268)
.|..||..+.-.-....+|+..|..|...||....-+......+..
T Consensus 15 Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~ 60 (78)
T 3efg_A 15 RLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777888888999998888887777666554
No 52
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=44.99 E-value=42 Score=22.38 Aligned_cols=29 Identities=24% Similarity=0.354 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024426 94 KVEDAKLARDFQTVLQEFQKIQQLASERE 122 (268)
Q Consensus 94 k~~~~~L~~~f~~~l~~fq~~q~~~~~r~ 122 (268)
...++.|..+|..++.+|...|...+.|.
T Consensus 13 E~sld~LQTrfARLLaEy~ssQ~KLKqRi 41 (74)
T 3swf_A 13 ESSVDLLQTRFARILAEYESMQQKLKQRL 41 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567899999999999999999887764
No 53
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=42.28 E-value=36 Score=23.81 Aligned_cols=29 Identities=7% Similarity=0.045 Sum_probs=25.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHc
Q 024426 18 SKSPSQAVAAGIFQINTAVAAFRRLVDAI 46 (268)
Q Consensus 18 f~~~~~~i~~~i~~i~~~v~~l~~~~~~l 46 (268)
|..++.+-...|...+..|.++++.+..+
T Consensus 10 F~~lv~~fe~rL~~Yr~~IeelE~~L~s~ 38 (93)
T 3t98_B 10 FRVLVQQFEVQLQQYRQQIEELENHLATQ 38 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88999999999999999999999887644
No 54
>3ajm_A Programmed cell death protein 10; adaptor protein, dimerization, four-helix bundle, apoptosis; HET: 4IP; 2.30A {Homo sapiens} PDB: 3l8i_A 3rqe_A 3rqf_A 3rqg_A 3l8j_A
Probab=40.69 E-value=1.4e+02 Score=24.03 Aligned_cols=25 Identities=8% Similarity=0.113 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024426 94 KVEDAKLARDFQTVLQEFQKIQQLA 118 (268)
Q Consensus 94 k~~~~~L~~~f~~~l~~fq~~q~~~ 118 (268)
+..++.-.++|-.-..+|...-+.|
T Consensus 150 k~~le~~KreFVkySKrFS~TLKeY 174 (213)
T 3ajm_A 150 RRALEHQKKEFVKYSKSFSDTLKTY 174 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHhhHHHHHH
Confidence 3344444555555555555444433
No 55
>1m56_D Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} SCOP: f.23.8.1 PDB: 1m57_D*
Probab=36.26 E-value=25 Score=21.73 Aligned_cols=7 Identities=29% Similarity=0.771 Sum_probs=2.7
Q ss_pred hhHHHHH
Q 024426 246 SWCWWVL 252 (268)
Q Consensus 246 k~~~~~~ 252 (268)
||.++.+
T Consensus 33 k~gt~~~ 39 (51)
T 1m56_D 33 TWAAVVI 39 (51)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 56
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=35.59 E-value=22 Score=24.18 Aligned_cols=29 Identities=17% Similarity=0.171 Sum_probs=16.3
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 024426 212 VIDDISSNIESSAATTTHARVQLAKASKN 240 (268)
Q Consensus 212 ~lD~Ie~Nv~~a~~~v~~a~~~l~~a~~~ 240 (268)
|-|.++.-++...+.++...+=|..|.+-
T Consensus 14 ~~d~~~~~~e~~~~f~kd~~rvlk~~~KP 42 (80)
T 2ww9_B 14 SNNQVEKLVEAPVEFVREGTQFLAKCKKP 42 (80)
T ss_dssp -------CCHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45777778888888888887777666543
No 57
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=35.47 E-value=98 Score=20.65 Aligned_cols=38 Identities=16% Similarity=0.277 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHH
Q 024426 185 LREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIES 222 (268)
Q Consensus 185 I~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~ 222 (268)
|.++...+.|+..|+.+=-.-|-+-|+-||.+++-.+.
T Consensus 17 l~~vq~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~ 54 (80)
T 1l4a_A 17 LQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADA 54 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 44555666777777777777788889888887766554
No 58
>2beq_A E2 glycoprotein; viral protein, coiled coil, membrane fusion, viral entry, envelope protein, signal, transmembrane, virulence; 1.6A {Sars coronavirus PUMC03} SCOP: h.3.3.1
Probab=34.50 E-value=67 Score=18.46 Aligned_cols=31 Identities=13% Similarity=0.338 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 024426 186 REIEEQIGQANEIFKDLAVLVHEQGVVIDDI 216 (268)
Q Consensus 186 ~~Ie~~i~el~~iF~dLa~lV~eQge~lD~I 216 (268)
.++..++..++.-+..+-..|..||..|...
T Consensus 2 ~q~~~g~~tv~~AL~KiQ~VVN~q~~aL~~L 32 (38)
T 2beq_A 2 SQIQESLTTTSTALGKLQDVVNQNAQALNTL 32 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3566777778888888888899999888654
No 59
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=34.39 E-value=2.2e+02 Score=24.34 Aligned_cols=58 Identities=17% Similarity=0.278 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHH
Q 024426 177 IIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQL 234 (268)
Q Consensus 177 ~i~eR~~eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a~~~l 234 (268)
.+.+=...+..|...+.++...+.+++.-+.+|...++.|..++.....-++.....+
T Consensus 221 ~~~~~~~~~~~i~~~~~~i~~~~~~i~~~~~~~~~~~~~i~~~i~~i~~~~~~~~~~~ 278 (341)
T 3zx6_A 221 LVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQNAALV 278 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667788899999999999999999999999999999888877766555544333
No 60
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=32.68 E-value=33 Score=22.85 Aligned_cols=17 Identities=18% Similarity=0.413 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHhC
Q 024426 252 LAIIVVALVILLLVFIL 268 (268)
Q Consensus 252 ~i~~~i~~~ii~~~l~~ 268 (268)
.+++..|++++.++|++
T Consensus 23 GLifA~vLfi~GI~iil 39 (74)
T 2zxe_G 23 GLIVAAVLCVIGIIILL 39 (74)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred cchhHHHHHHHHHHHHH
Confidence 44555666666666553
No 61
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1
Probab=32.25 E-value=2e+02 Score=23.18 Aligned_cols=55 Identities=18% Similarity=0.275 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHH
Q 024426 178 IEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARV 232 (268)
Q Consensus 178 i~eR~~eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a~~ 232 (268)
+.+=...+..|...+.++..++.+++..+.+|...++.|..++.....-++....
T Consensus 142 ~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~i~~i~~~~~~~~~ 196 (227)
T 1qu7_A 142 VESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQNAA 196 (227)
T ss_dssp HHHHTTHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555567788899999999999999999999999999999888876665554433
No 62
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=31.64 E-value=55 Score=29.64 Aligned_cols=27 Identities=11% Similarity=0.078 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024426 55 HRQKLHNTRQRILQLVKDTSAKLKSVS 81 (268)
Q Consensus 55 ~~~~i~~l~~~i~~l~~~~~~~l~~l~ 81 (268)
+..+|...+.+++.+.++|...=++|.
T Consensus 94 ~n~~i~~~V~~iN~l~~qIa~LN~qI~ 120 (463)
T 2d4y_A 94 VNIAIGSSVAQINNYAKQIANLNDQIS 120 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666555544444
No 63
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=30.87 E-value=96 Score=19.13 Aligned_cols=22 Identities=23% Similarity=0.296 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHcCCCcc
Q 024426 30 FQINTAVAAFRRLVDAIGTSKD 51 (268)
Q Consensus 30 ~~i~~~v~~l~~~~~~l~t~~d 51 (268)
..+...+..|+..++.||..--
T Consensus 5 kaleekvkaleekvkalggggr 26 (67)
T 1lq7_A 5 KALEEKVKALEEKVKALGGGGR 26 (67)
T ss_dssp HHHHHHHHHHHHHHHHSCCSSS
T ss_pred HHHHHHHHHHHHHHHHhcCCcc
Confidence 3455666677777777765543
No 64
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=30.08 E-value=28 Score=22.74 Aligned_cols=15 Identities=20% Similarity=0.058 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHh
Q 024426 253 AIIVVALVILLLVFI 267 (268)
Q Consensus 253 i~~~i~~~ii~~~l~ 267 (268)
++++.|++++.++|+
T Consensus 22 LifA~vLfi~GI~ii 36 (67)
T 2jp3_A 22 LIFGGLLCIAGIALA 36 (67)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHH
Confidence 344445555544444
No 65
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=30.01 E-value=1.1e+02 Score=19.54 Aligned_cols=38 Identities=8% Similarity=0.191 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHH
Q 024426 185 LREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIES 222 (268)
Q Consensus 185 I~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~ 222 (268)
|..+...+.++..++.+=-.-|.+-|+-|+.+++-.+.
T Consensus 6 i~~v~~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~ 43 (63)
T 1urq_A 6 IEGVKGAASGVVGELARARLALDERGQKLSDLEERTAA 43 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677778888888888888888888888888776555
No 66
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=28.84 E-value=30 Score=22.81 Aligned_cols=15 Identities=27% Similarity=0.408 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHh
Q 024426 253 AIIVVALVILLLVFI 267 (268)
Q Consensus 253 i~~~i~~~ii~~~l~ 267 (268)
++++.|++++.++|+
T Consensus 21 LifA~vLfi~GI~ii 35 (72)
T 2jo1_A 21 LVIAGILFILGILIV 35 (72)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 344444444444443
No 67
>3p8c_F ABL interactor 2; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=28.61 E-value=2e+02 Score=22.09 Aligned_cols=46 Identities=11% Similarity=0.111 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHH
Q 024426 182 EHGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATT 227 (268)
Q Consensus 182 ~~eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v 227 (268)
.-..+.|..-+-.|+.+-..|-.|+..|.+.+..+|..|......+
T Consensus 53 ~Ya~qsLaSVAyqIn~lA~~ll~lLd~Q~~~l~~mes~v~~l~Q~v 98 (159)
T 3p8c_F 53 AYTTQSLASVAYLINTLANNVLQMLDIQASQLRRMESSINHISQTV 98 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677788888899999999999999999999999999766554
No 68
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=27.44 E-value=1.4e+02 Score=24.16 Aligned_cols=63 Identities=14% Similarity=0.214 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 024426 178 IEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTHARVQLAKASKN 240 (268)
Q Consensus 178 i~eR~~eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~a~~~l~~a~~~ 240 (268)
+.+=...|..|...+.++..+-.+-+..+.+=...++.+..+++.+...+.+|...-.++++.
T Consensus 214 i~~I~~~i~ei~~~~~~ia~~v~eQ~~~~~~I~~nv~~~~~~v~~~~~el~~A~~~q~~~Rkk 276 (279)
T 3c98_B 214 IIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRK 276 (279)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 666667888888889999999999888888878888899999999999999998877776654
No 69
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, D binding protein; 3.10A {Cauliflower mosaic virus}
Probab=27.34 E-value=1.3e+02 Score=21.98 Aligned_cols=25 Identities=12% Similarity=0.283 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC
Q 024426 24 AVAAGIFQINTAVAAFRRLVDAIGT 48 (268)
Q Consensus 24 ~i~~~i~~i~~~v~~l~~~~~~l~t 48 (268)
+|+..+..+.....+++.+.+.+|+
T Consensus 10 ei~e~~~~i~~l~~~Ik~il~~~~s 34 (129)
T 3f6n_A 10 EVSEILSDQKSMKADIKAILELLGS 34 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3333333334444444444444443
No 70
>3din_D Preprotein translocase subunit SECE; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8}
Probab=27.20 E-value=94 Score=19.89 Aligned_cols=36 Identities=11% Similarity=-0.015 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHH
Q 024426 223 SAATTTHARVQLAKASKNVKSRSSWCWWVLAIIVVA 258 (268)
Q Consensus 223 a~~~v~~a~~~l~~a~~~qk~~rk~~~~~~i~~~i~ 258 (268)
...+......|++|..=--|+-....-..+++++++
T Consensus 4 ~~~f~~~v~~ElkKV~WPtr~e~~~~T~vViv~~~i 39 (65)
T 3din_D 4 LRKFFREVIAEAKKISWPSRKELLTSFGVVLVILAV 39 (65)
T ss_dssp ------CHHHHHHHHHHHHCCCCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCcCHHHHHhHHHHHHHHHHH
Confidence 445666777888777665554333333333333333
No 71
>1yod_A Water-solublized phospholamban; protein design, water-soluble, de novo protein; 1.80A {Synthetic}
Probab=26.70 E-value=48 Score=17.63 Aligned_cols=8 Identities=0% Similarity=-0.504 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 024426 249 WWVLAIIV 256 (268)
Q Consensus 249 ~~~~i~~~ 256 (268)
|.+.+|+.
T Consensus 15 cLilICll 22 (30)
T 1yod_A 15 CLREICQE 22 (30)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333433
No 72
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=25.85 E-value=1.3e+02 Score=19.09 Aligned_cols=39 Identities=13% Similarity=0.313 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHH
Q 024426 184 GLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIES 222 (268)
Q Consensus 184 eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~ 222 (268)
.|.++...+.|+..|+.+==.-|-+-|+-||.+..-.+.
T Consensus 10 ~l~~vq~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~ 48 (65)
T 1gl2_A 10 RVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTED 48 (65)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 466777888888888888777888889888877665444
No 73
>1pp9_D Cytochrome C-1, cytochrome C1, heme protein, mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: a.3.1.3 f.23.11.1 PDB: 1bgy_D* 1be3_D* 1l0n_D* 1ntk_D* 1ntm_D* 1ntz_D* 1nu1_D* 1l0l_D* 1ppj_D* 1sqb_D* 1sqp_D* 1sqq_D* 1sqv_D* 1sqx_D* 2a06_D* 2fyu_D* 2ybb_D* 1bcc_D* 2bcc_D* 3bcc_D* ...
Probab=25.46 E-value=1e+02 Score=25.50 Aligned_cols=38 Identities=11% Similarity=0.037 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHH
Q 024426 227 TTHARVQLAKASKNVKSRSSWCWWVLAIIVVALVILLL 264 (268)
Q Consensus 227 v~~a~~~l~~a~~~qk~~rk~~~~~~i~~~i~~~ii~~ 264 (268)
+..-..-|.-+.+-.+-.||++-+-++++++|+++++.
T Consensus 183 a~Dvv~FL~w~aEP~~~~Rk~~G~~vl~fL~il~~l~y 220 (241)
T 1pp9_D 183 AKDVCTFLRWAAEPEHDHRKRMGLKMLLMMGLLLPLVY 220 (241)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445566666666677776666666655555543
No 74
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=25.36 E-value=1.2e+02 Score=18.61 Aligned_cols=29 Identities=17% Similarity=0.256 Sum_probs=16.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 024426 211 VVIDDISSNIESSAATTTHARVQLAKASK 239 (268)
Q Consensus 211 e~lD~Ie~Nv~~a~~~v~~a~~~l~~a~~ 239 (268)
..||.+...|......+..|..+-..|..
T Consensus 18 ~kVdqLssdV~al~~~v~~ak~eA~RAN~ 46 (52)
T 1jcd_A 18 AKADQASNDANAARSDAQAAKDDAARANQ 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555666666666666655554
No 75
>3cx5_D Cytochrome C1, heme protein, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: a.3.1.3 f.23.11.1 PDB: 1kyo_D* 2ibz_D* 3cxh_D* 1kb9_D* 1p84_D* 1ezv_D*
Probab=24.88 E-value=1e+02 Score=25.52 Aligned_cols=34 Identities=15% Similarity=0.085 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHH
Q 024426 231 RVQLAKASKNVKSRSSWCWWVLAIIVVALVILLL 264 (268)
Q Consensus 231 ~~~l~~a~~~qk~~rk~~~~~~i~~~i~~~ii~~ 264 (268)
..-|.-+.+-.+-.||++-+.++++++|+++++.
T Consensus 191 v~FL~w~aEP~~~~Rk~~G~~vl~fL~il~~l~y 224 (248)
T 3cx5_D 191 TTFLNWCAEPEHDERKRLGLKTVIILSSLYLLSI 224 (248)
T ss_dssp HHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555566677776666666655555543
No 76
>3kpe_A Fusion glycoprotein F0; peptide-small-molecule complex, alpha helix, coiled-coil, EN protein, fusion protein; HET: TM3 PG4; 1.47A {Human respiratory syncytial virus} PDB: 1g2c_A
Probab=24.47 E-value=1.3e+02 Score=18.48 Aligned_cols=40 Identities=15% Similarity=0.135 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHH
Q 024426 183 HGLREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIES 222 (268)
Q Consensus 183 ~eI~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~ 222 (268)
-+|..|..+|..-|+--.||..=+...+..|+.|-..|..
T Consensus 4 ~~I~~Lk~ai~~TNeAV~~L~~g~~~la~Av~~iQ~~IN~ 43 (51)
T 3kpe_A 4 GEVNKIKSALLSTNKAVVSLSNGVSVLTSKVLDLKNYIDK 43 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888888888888888777766653
No 77
>2yiu_B Cytochrome C1, heme protein; oxidoreductase; HET: HEM SMA HEC; 2.70A {Paracoccus denitrificans}
Probab=24.33 E-value=1.1e+02 Score=25.68 Aligned_cols=36 Identities=17% Similarity=0.131 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHH
Q 024426 229 HARVQLAKASKNVKSRSSWCWWVLAIIVVALVILLL 264 (268)
Q Consensus 229 ~a~~~l~~a~~~qk~~rk~~~~~~i~~~i~~~ii~~ 264 (268)
.-..-|.-+.+-.+-.||++-+-++++++|+.+++.
T Consensus 211 DVvaFL~waaEP~~~~Rk~lG~~vl~fL~il~~l~y 246 (263)
T 2yiu_B 211 DVAAFLMWTAEPKMMDRKQVGFVSVIFLIVLAALLY 246 (263)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555555677776666666555555543
No 78
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=24.15 E-value=1.8e+02 Score=19.96 Aligned_cols=27 Identities=7% Similarity=0.117 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024426 54 DHRQKLHNTRQRILQLVKDTSAKLKSV 80 (268)
Q Consensus 54 ~~~~~i~~l~~~i~~l~~~~~~~l~~l 80 (268)
.++.+++.+......+...+..+-+.|
T Consensus 82 ~i~~~l~~l~~rw~~L~~~~~~R~~~L 108 (118)
T 3uul_A 82 EIQEQMTLLNARWEALRVESMERQSRL 108 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555444444444444444333
No 79
>1zrt_D Cytochrome C1; cytochrome BC1, membrane protein, heme protein, rieske iron sulfur protein; HET: HEM SMA HEC; 3.50A {Rhodobacter capsulatus}
Probab=23.33 E-value=1.2e+02 Score=25.41 Aligned_cols=34 Identities=15% Similarity=0.046 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHH
Q 024426 231 RVQLAKASKNVKSRSSWCWWVLAIIVVALVILLL 264 (268)
Q Consensus 231 ~~~l~~a~~~qk~~rk~~~~~~i~~~i~~~ii~~ 264 (268)
..-|.-|.+-.+-.||++-+-++++++|+++++.
T Consensus 210 v~FL~waaEP~~~~Rk~~G~~vl~fL~il~~l~y 243 (258)
T 1zrt_D 210 SAFLMWAAEPKLVARKQMGLVAMVMLGLLSVMLY 243 (258)
T ss_dssp HHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556666666677776666666655555543
No 80
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=23.16 E-value=1.8e+02 Score=21.45 Aligned_cols=28 Identities=7% Similarity=0.135 Sum_probs=19.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 024426 18 SKSPSQAVAAGIFQINTAVAAFRRLVDA 45 (268)
Q Consensus 18 f~~~~~~i~~~i~~i~~~v~~l~~~~~~ 45 (268)
|.....++...|..|...+.+|.+-+..
T Consensus 65 ~~~~~~EL~~~l~sie~dLeDLe~sI~i 92 (130)
T 4dnd_A 65 LDWTTNELRNGLRSIEWDLEDLEETIGI 92 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666777777777777777777776653
No 81
>2qjy_B Cytochrome C1; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_B* 2qjp_B* 2qjk_B*
Probab=23.12 E-value=1.2e+02 Score=25.55 Aligned_cols=33 Identities=15% Similarity=0.113 Sum_probs=19.7
Q ss_pred HHHHHHHHHhhccchhHHHHHHHHHHHHHHHHH
Q 024426 232 VQLAKASKNVKSRSSWCWWVLAIIVVALVILLL 264 (268)
Q Consensus 232 ~~l~~a~~~qk~~rk~~~~~~i~~~i~~~ii~~ 264 (268)
.-|.-|.+-.+-.||++-+-++++++|+++++.
T Consensus 213 aFL~waaEP~~~~Rk~lG~~Vl~fL~il~~l~y 245 (269)
T 2qjy_B 213 AFLMWAAEPKLMARKQAGFTAVMFLTVLSVLLY 245 (269)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555666677776666666655555543
No 82
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=21.77 E-value=2.1e+02 Score=19.86 Aligned_cols=59 Identities=10% Similarity=0.174 Sum_probs=30.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHHHHHHHHHH---HHHHhhh
Q 024426 20 SPSQAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLHNTRQRILQLVKDTS---AKLKSVS 81 (268)
Q Consensus 20 ~~~~~i~~~i~~i~~~v~~l~~~~~~l~t~~d~~~~~~~i~~l~~~i~~l~~~~~---~~l~~l~ 81 (268)
..|..+...-.==..-+.+|.+.+..+.++.=. ..+|.+|.++|++|+++-. .+|++|.
T Consensus 18 ~~v~~l~~AekWR~qvikEIs~Kv~~Iqn~~L~---E~~IRdLNDEINkL~rEK~~WE~rI~eLG 79 (92)
T 1x4t_A 18 SECTELPKAEKWRRQIIGEISKKVAQIQNAGLG---EFRIRDLNDEINKLLREKGHWEVRIKELG 79 (92)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHHHHHHHCCSC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHhhCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344444433333333444555554443222111 3478888888888887543 3566664
No 83
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=21.24 E-value=2.1e+02 Score=20.27 Aligned_cols=29 Identities=17% Similarity=0.468 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024426 173 FNEAIIEEREHGLREIEEQIGQANEIFKD 201 (268)
Q Consensus 173 ~~~~~i~eR~~eI~~Ie~~i~el~~iF~d 201 (268)
.|..-++.|..++..|+..|.||..+..|
T Consensus 72 vNK~tl~~R~~~Vsalq~KiaeLKrqLAd 100 (107)
T 2k48_A 72 VNKSTLQNRRAAVSTLETKLGELKRQLAD 100 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456899999999999999999986555
No 84
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=21.03 E-value=1.6e+02 Score=20.60 Aligned_cols=31 Identities=23% Similarity=0.380 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024426 179 EEREHGLREIEEQIGQANEIFKDLAVLVHEQ 209 (268)
Q Consensus 179 ~eR~~eI~~Ie~~i~el~~iF~dLa~lV~eQ 209 (268)
.+|...|++++..+.|..++..+|...|..-
T Consensus 45 e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~ 75 (102)
T 2qyw_A 45 EEKKKLVRDFDEKQQEANETLAEMEEELRYA 75 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5677788899999999999888888777643
No 85
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=20.74 E-value=4.4e+02 Score=23.25 Aligned_cols=21 Identities=10% Similarity=0.229 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024426 23 QAVAAGIFQINTAVAAFRRLV 43 (268)
Q Consensus 23 ~~i~~~i~~i~~~v~~l~~~~ 43 (268)
..+...|.+|+..+..+.+.+
T Consensus 63 r~~~~rIe~L~~~L~~~s~s~ 83 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNYQKNS 83 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhh
Confidence 344445555555555554443
No 86
>1svf_B Protein (fusion glycoprotein); paramyxovirus, SV5, coiled-coil, viral protein; 1.40A {Simian virus 5} SCOP: h.3.2.1
Probab=20.64 E-value=1.3e+02 Score=17.17 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=12.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHH
Q 024426 217 SSNIESSAATTTHARVQLAKASK 239 (268)
Q Consensus 217 e~Nv~~a~~~v~~a~~~l~~a~~ 239 (268)
..++.++...+..|...|.++..
T Consensus 11 S~eL~~~n~sl~~A~~~l~~Sn~ 33 (38)
T 1svf_B 11 SQNLAAVNKSLSDALQHLAQSDT 33 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555544
No 87
>4aj5_K Spindle and kinetochore-associated protein 2; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=20.57 E-value=2.5e+02 Score=20.47 Aligned_cols=42 Identities=19% Similarity=0.194 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHH
Q 024426 185 LREIEEQIGQANEIFKDLAVLVHEQGVVIDDISSNIESSAATTTH 229 (268)
Q Consensus 185 I~~Ie~~i~el~~iF~dLa~lV~eQge~lD~Ie~Nv~~a~~~v~~ 229 (268)
|..|..-..-|...|++|+ .+|-+.+|.|=..+..+-.-+++
T Consensus 52 LsaIk~ry~~L~~q~~~ia---aeQke~~d~ir~tL~~tm~miQ~ 93 (123)
T 4aj5_K 52 LSVIKSRYQTLYARFKPVA---VEQKESKSRICATVKKTMNMIQK 93 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455677777655 58889999999988877766654
Done!