Query 024428
Match_columns 268
No_of_seqs 220 out of 1129
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 08:04:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024428.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024428hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dmn_A Homeobox protein TGIF2L 99.8 2.1E-19 7E-24 135.9 5.8 66 168-234 6-71 (83)
2 3k2a_A Homeobox protein MEIS2; 99.8 7.8E-19 2.7E-23 127.7 6.8 61 173-234 2-62 (67)
3 2lk2_A Homeobox protein TGIF1; 99.7 4E-19 1.4E-23 136.1 4.0 61 173-234 9-69 (89)
4 1x2n_A Homeobox protein pknox1 99.7 2E-18 6.8E-23 127.0 6.9 65 169-234 7-71 (73)
5 1du6_A PBX1, homeobox protein 99.7 8E-18 2.7E-22 120.6 7.1 62 169-231 3-64 (64)
6 1le8_B Mating-type protein alp 99.7 3.3E-17 1.1E-21 123.7 8.7 65 169-234 2-66 (83)
7 1puf_B PRE-B-cell leukemia tra 99.7 1.9E-17 6.5E-22 121.7 7.0 64 170-234 2-65 (73)
8 1k61_A Mating-type protein alp 99.7 3.2E-17 1.1E-21 116.0 7.4 59 172-231 1-59 (60)
9 1b72_B Protein (PBX1); homeodo 99.7 2.9E-17 9.9E-22 124.6 7.1 64 170-234 2-65 (87)
10 1mnm_C Protein (MAT alpha-2 tr 99.7 7.7E-17 2.6E-21 122.5 7.7 60 169-229 27-86 (87)
11 1akh_A Protein (mating-type pr 99.6 1.9E-15 6.5E-20 107.1 6.5 57 169-229 5-61 (61)
12 2ecc_A Homeobox and leucine zi 99.6 2.1E-15 7.2E-20 112.3 6.3 59 171-233 5-63 (76)
13 1bw5_A ISL-1HD, insulin gene e 99.5 1.1E-14 3.7E-19 104.9 7.6 61 169-233 3-63 (66)
14 2k40_A Homeobox expressed in E 99.5 6.6E-15 2.3E-19 106.3 6.4 65 170-238 2-66 (67)
15 2hdd_A Protein (engrailed home 99.5 1.8E-14 6.2E-19 102.2 6.8 58 169-230 3-60 (61)
16 2cra_A Homeobox protein HOX-B1 99.5 2.6E-14 8.7E-19 104.2 7.6 61 169-233 7-67 (70)
17 2dmu_A Homeobox protein goosec 99.5 2.4E-14 8.1E-19 104.3 6.5 61 169-233 7-67 (70)
18 2da2_A Alpha-fetoprotein enhan 99.5 3.7E-14 1.3E-18 103.2 7.5 61 169-233 7-67 (70)
19 1ig7_A Homeotic protein MSX-1; 99.5 2.7E-14 9.3E-19 100.1 6.3 57 170-230 1-57 (58)
20 2da4_A Hypothetical protein DK 99.5 7.9E-15 2.7E-19 109.6 3.8 63 169-232 8-71 (80)
21 2djn_A Homeobox protein DLX-5; 99.5 3.1E-14 1E-18 103.7 6.8 61 169-233 7-67 (70)
22 2h1k_A IPF-1, pancreatic and d 99.5 2.8E-14 9.7E-19 101.9 6.2 58 169-230 3-60 (63)
23 1jgg_A Segmentation protein EV 99.5 3.2E-14 1.1E-18 100.5 6.2 57 170-230 2-58 (60)
24 2da1_A Alpha-fetoprotein enhan 99.5 2.7E-14 9.4E-19 103.8 6.0 61 169-233 7-67 (70)
25 2e1o_A Homeobox protein PRH; D 99.5 2.9E-14 9.8E-19 103.9 6.1 60 169-232 7-66 (70)
26 3rkq_A Homeobox protein NKX-2. 99.5 4.1E-14 1.4E-18 98.8 6.4 57 169-229 2-58 (58)
27 2vi6_A Homeobox protein nanog; 99.5 5E-14 1.7E-18 100.2 6.9 58 169-230 3-60 (62)
28 2dmt_A Homeobox protein BARH-l 99.5 7.2E-14 2.5E-18 104.4 7.5 61 169-233 17-77 (80)
29 1fjl_A Paired protein; DNA-bin 99.5 4.3E-14 1.5E-18 105.8 6.1 60 168-231 17-76 (81)
30 2l7z_A Homeobox protein HOX-A1 99.5 7.4E-14 2.5E-18 102.6 7.2 62 169-234 7-68 (73)
31 2da3_A Alpha-fetoprotein enhan 99.5 3.9E-14 1.3E-18 105.4 5.7 60 169-232 17-76 (80)
32 1ftt_A TTF-1 HD, thyroid trans 99.5 6.1E-14 2.1E-18 101.7 6.2 62 169-234 2-63 (68)
33 2dmq_A LIM/homeobox protein LH 99.5 5.8E-14 2E-18 104.7 6.1 60 169-232 7-66 (80)
34 1ahd_P Antennapedia protein mu 99.5 4.6E-14 1.6E-18 102.4 5.1 61 169-233 2-62 (68)
35 2dms_A Homeobox protein OTX2; 99.5 1E-13 3.6E-18 103.4 6.8 62 169-234 7-68 (80)
36 3a02_A Homeobox protein arista 99.5 1.2E-13 4.2E-18 97.5 6.6 56 172-231 2-57 (60)
37 1nk2_P Homeobox protein VND; h 99.4 1.1E-13 3.7E-18 102.7 6.2 60 169-232 9-68 (77)
38 1zq3_P PRD-4, homeotic bicoid 99.4 8.8E-14 3E-18 100.8 5.5 60 169-232 2-61 (68)
39 2dn0_A Zinc fingers and homeob 99.4 1.7E-13 5.8E-18 101.4 7.1 61 170-234 9-69 (76)
40 1wh5_A ZF-HD homeobox family p 99.4 2E-13 6.7E-18 102.4 7.2 62 169-231 17-79 (80)
41 1yz8_P Pituitary homeobox 2; D 99.4 3.6E-14 1.2E-18 102.8 2.9 61 169-233 3-63 (68)
42 2kt0_A Nanog, homeobox protein 99.4 2.9E-13 1E-17 101.7 7.6 61 169-233 22-82 (84)
43 2cue_A Paired box protein PAX6 99.4 1.3E-13 4.3E-18 103.1 5.5 61 169-233 7-67 (80)
44 2d5v_A Hepatocyte nuclear fact 99.4 2.1E-13 7.2E-18 114.8 7.3 63 167-233 95-157 (164)
45 2m0c_A Homeobox protein arista 99.4 1.8E-13 6E-18 100.5 5.9 61 169-233 9-69 (75)
46 1b8i_A Ultrabithorax, protein 99.4 2.7E-13 9.2E-18 101.6 6.9 60 169-232 20-79 (81)
47 1puf_A HOX-1.7, homeobox prote 99.4 2.4E-13 8.3E-18 100.8 6.4 60 169-232 13-72 (77)
48 2ecb_A Zinc fingers and homeob 99.4 4.4E-13 1.5E-17 102.6 7.6 60 173-236 15-74 (89)
49 1uhs_A HOP, homeodomain only p 99.4 2.5E-13 8.6E-18 99.4 6.0 58 171-232 3-61 (72)
50 3a01_A Homeodomain-containing 99.4 2.7E-13 9.3E-18 104.3 5.9 61 169-233 17-77 (93)
51 3a03_A T-cell leukemia homeobo 99.4 3.4E-13 1.2E-17 94.1 5.6 52 175-230 3-54 (56)
52 2da5_A Zinc fingers and homeob 99.4 4.3E-13 1.5E-17 99.1 6.2 59 171-233 9-67 (75)
53 2hi3_A Homeodomain-only protei 99.4 4.1E-13 1.4E-17 98.6 6.0 59 170-232 3-62 (73)
54 2cuf_A FLJ21616 protein; homeo 99.4 3E-13 1E-17 104.2 5.4 61 169-233 7-82 (95)
55 3d1n_I POU domain, class 6, tr 99.4 5.6E-13 1.9E-17 110.9 7.1 58 169-230 93-150 (151)
56 3nau_A Zinc fingers and homeob 99.4 4.2E-13 1.5E-17 97.0 5.5 51 176-230 11-61 (66)
57 2r5y_A Homeotic protein sex co 99.4 5.1E-13 1.7E-17 101.5 6.1 60 168-231 27-86 (88)
58 2ly9_A Zinc fingers and homeob 99.4 1.1E-12 3.7E-17 96.3 7.5 62 169-234 6-67 (74)
59 3nar_A ZHX1, zinc fingers and 99.4 1.2E-12 4E-17 101.1 7.2 61 169-233 25-85 (96)
60 1b72_A Protein (homeobox prote 99.3 8.5E-13 2.9E-17 102.1 5.5 59 169-231 34-92 (97)
61 2e19_A Transcription factor 8; 99.3 2.6E-12 8.8E-17 92.4 6.9 55 172-230 6-60 (64)
62 1wh7_A ZF-HD homeobox family p 99.3 1.9E-12 6.4E-17 97.1 6.1 61 169-231 17-79 (80)
63 2dmp_A Zinc fingers and homeob 99.3 2.5E-12 8.5E-17 98.1 6.8 57 172-232 16-72 (89)
64 1au7_A Protein PIT-1, GHF-1; c 99.3 4E-12 1.4E-16 105.4 7.4 59 168-230 86-144 (146)
65 1e3o_C Octamer-binding transcr 99.3 3.7E-12 1.3E-16 107.0 7.2 59 169-231 101-159 (160)
66 2cqx_A LAG1 longevity assuranc 99.3 3.8E-12 1.3E-16 93.5 5.1 58 171-232 10-68 (72)
67 2xsd_C POU domain, class 3, tr 99.3 5.7E-12 2E-16 106.4 6.8 62 168-233 98-159 (164)
68 1wi3_A DNA-binding protein SAT 99.3 1.1E-11 3.6E-16 90.0 7.2 62 168-233 6-68 (71)
69 1lfb_A Liver transcription fac 99.3 6.5E-12 2.2E-16 97.9 6.6 63 167-233 7-90 (99)
70 2l9r_A Homeobox protein NKX-3. 99.3 1.1E-11 3.9E-16 90.4 7.0 55 175-233 10-64 (69)
71 2da6_A Hepatocyte nuclear fact 99.2 5.8E-12 2E-16 98.5 5.2 62 169-234 6-88 (102)
72 3l1p_A POU domain, class 5, tr 99.2 9E-12 3.1E-16 104.2 4.6 60 168-231 95-154 (155)
73 1x2m_A LAG1 longevity assuranc 99.1 5.1E-11 1.8E-15 85.7 5.8 49 179-231 10-59 (64)
74 2h8r_A Hepatocyte nuclear fact 99.1 1.1E-10 3.7E-15 102.8 6.4 56 169-228 142-218 (221)
75 1mh3_A Maltose binding-A1 home 99.0 1.3E-10 4.5E-15 108.2 5.8 56 170-229 366-421 (421)
76 1ic8_A Hepatocyte nuclear fact 99.0 1.3E-10 4.4E-15 100.7 4.6 57 169-229 115-192 (194)
77 2da7_A Zinc finger homeobox pr 98.9 1.3E-09 4.6E-14 79.4 6.0 47 178-228 14-60 (71)
78 2nzz_A Penetratin conjugated G 97.0 0.00011 3.9E-09 46.9 0.1 23 215-237 1-23 (37)
79 2ys9_A Homeobox and leucine zi 95.9 0.0057 1.9E-07 44.2 3.2 45 176-224 13-57 (70)
80 1hlv_A CENP-B, major centromer 87.0 1.5 5.2E-05 33.6 6.5 49 171-226 3-51 (131)
81 2glo_A Brinker CG9653-PA; prot 72.9 5.8 0.0002 26.3 4.7 47 173-224 3-49 (59)
82 2elh_A CG11849-PA, LD40883P; s 72.8 4 0.00014 29.4 4.1 46 171-225 18-63 (87)
83 1iuf_A Centromere ABP1 protein 69.5 4.6 0.00016 32.0 4.1 50 170-226 6-62 (144)
84 2o8x_A Probable RNA polymerase 65.8 5.3 0.00018 26.7 3.3 50 174-232 14-63 (70)
85 3hug_A RNA polymerase sigma fa 63.5 4.3 0.00015 29.3 2.6 48 175-231 37-84 (92)
86 2rn7_A IS629 ORFA; helix, all 62.0 22 0.00074 26.1 6.4 53 173-226 4-56 (108)
87 2p7v_B Sigma-70, RNA polymeras 61.5 9.3 0.00032 25.8 3.9 55 175-234 5-59 (68)
88 1tc3_C Protein (TC3 transposas 60.9 24 0.00082 21.0 5.6 43 174-225 4-46 (51)
89 1ku3_A Sigma factor SIGA; heli 59.7 8.9 0.0003 26.3 3.6 55 174-233 9-64 (73)
90 1tty_A Sigma-A, RNA polymerase 59.7 10 0.00034 27.1 4.0 55 175-234 18-72 (87)
91 3mzy_A RNA polymerase sigma-H 49.7 15 0.00051 28.1 3.8 47 175-231 109-155 (164)
92 3bd1_A CRO protein; transcript 48.3 12 0.0004 25.9 2.7 23 203-225 14-36 (79)
93 2xi8_A Putative transcription 46.2 11 0.00039 24.3 2.2 22 204-225 18-39 (66)
94 1s7o_A Hypothetical UPF0122 pr 46.2 14 0.00047 28.2 3.0 49 175-232 22-70 (113)
95 2r1j_L Repressor protein C2; p 45.9 12 0.0004 24.4 2.3 23 203-225 21-43 (68)
96 3lsg_A Two-component response 44.9 42 0.0015 24.1 5.5 41 180-224 3-43 (103)
97 1zug_A Phage 434 CRO protein; 44.8 12 0.00041 24.7 2.2 23 204-226 20-42 (71)
98 2rnj_A Response regulator prot 44.3 43 0.0015 23.7 5.4 49 175-233 29-77 (91)
99 1or7_A Sigma-24, RNA polymeras 43.7 13 0.00044 29.6 2.6 47 176-231 141-187 (194)
100 2q1z_A RPOE, ECF SIGE; ECF sig 42.7 8.9 0.00031 30.4 1.5 46 176-230 136-181 (184)
101 1rp3_A RNA polymerase sigma fa 42.3 14 0.00049 30.2 2.7 48 174-230 186-233 (239)
102 3c57_A Two component transcrip 42.2 38 0.0013 24.4 4.8 49 175-233 27-75 (95)
103 1adr_A P22 C2 repressor; trans 41.4 15 0.00051 24.6 2.3 23 203-225 21-43 (76)
104 3bs3_A Putative DNA-binding pr 41.0 15 0.00053 24.5 2.3 23 203-225 26-48 (76)
105 2b5a_A C.BCLI; helix-turn-heli 40.3 16 0.00054 24.5 2.3 23 203-225 26-48 (77)
106 1r69_A Repressor protein CI; g 40.3 16 0.00054 23.9 2.2 24 203-226 17-40 (69)
107 1je8_A Nitrate/nitrite respons 39.4 33 0.0011 24.1 4.0 49 175-233 21-69 (82)
108 1fse_A GERE; helix-turn-helix 39.3 42 0.0014 22.3 4.4 52 172-233 8-59 (74)
109 3omt_A Uncharacterized protein 38.6 17 0.00058 24.4 2.2 21 204-224 25-45 (73)
110 2wiu_B HTH-type transcriptiona 38.4 22 0.00075 24.5 2.9 38 180-225 13-50 (88)
111 1xsv_A Hypothetical UPF0122 pr 38.4 17 0.00057 27.6 2.3 49 175-232 25-73 (113)
112 3b7h_A Prophage LP1 protein 11 37.9 18 0.00061 24.3 2.2 22 204-225 24-45 (78)
113 2a6c_A Helix-turn-helix motif; 37.1 20 0.00069 25.0 2.5 23 203-225 34-56 (83)
114 1y7y_A C.AHDI; helix-turn-heli 37.1 19 0.00066 23.8 2.3 22 203-224 29-50 (74)
115 3kz3_A Repressor protein CI; f 36.6 19 0.00065 24.7 2.3 22 204-225 29-50 (80)
116 1x3u_A Transcriptional regulat 36.5 34 0.0012 23.1 3.6 49 176-234 17-65 (79)
117 1p4w_A RCSB; solution structur 34.3 58 0.002 24.0 4.8 51 172-232 31-81 (99)
118 2ict_A Antitoxin HIGA; helix-t 33.7 23 0.00078 25.1 2.3 38 180-225 9-46 (94)
119 2kpj_A SOS-response transcript 33.6 22 0.00077 25.2 2.3 22 204-225 26-47 (94)
120 2jpc_A SSRB; DNA binding prote 33.4 38 0.0013 21.8 3.2 29 205-233 18-46 (61)
121 2k9q_A Uncharacterized protein 32.8 22 0.00076 24.1 2.1 22 204-225 19-40 (77)
122 2ef8_A C.ECOT38IS, putative tr 32.5 25 0.00086 23.9 2.3 22 204-225 27-48 (84)
123 3t72_q RNA polymerase sigma fa 32.3 57 0.0019 24.2 4.4 55 175-234 19-73 (99)
124 1jko_C HIN recombinase, DNA-in 32.0 78 0.0027 18.9 4.5 20 204-223 25-44 (52)
125 1rzs_A Antirepressor, regulato 31.3 22 0.00076 23.7 1.8 19 203-221 13-31 (61)
126 2k27_A Paired box protein PAX- 30.4 1.7E+02 0.0059 22.5 7.3 54 173-230 81-141 (159)
127 2iw5_B Protein corest, REST co 30.4 69 0.0024 27.9 5.1 72 150-229 110-182 (235)
128 3mn2_A Probable ARAC family tr 29.9 95 0.0032 22.3 5.3 40 180-224 3-42 (108)
129 1neq_A DNA-binding protein NER 29.7 25 0.00084 24.6 1.9 20 204-223 26-45 (74)
130 3f6w_A XRE-family like protein 29.2 29 0.00099 23.7 2.2 22 204-225 31-52 (83)
131 1lmb_3 Protein (lambda repress 29.2 30 0.001 24.2 2.3 21 204-224 34-54 (92)
132 3oio_A Transcriptional regulat 28.9 98 0.0033 22.5 5.3 40 180-224 8-47 (113)
133 3t76_A VANU, transcriptional r 28.1 31 0.0011 24.9 2.2 22 203-224 40-61 (88)
134 2x48_A CAG38821; archeal virus 27.9 33 0.0011 21.7 2.1 20 204-223 35-54 (55)
135 1hlv_A CENP-B, major centromer 27.8 1.7E+02 0.0059 21.5 6.7 58 169-228 66-130 (131)
136 3bj4_A Potassium voltage-gated 27.5 68 0.0023 21.2 3.5 34 41-84 14-47 (49)
137 2l49_A C protein; P2 bacteriop 27.4 32 0.0011 24.3 2.2 22 204-225 21-42 (99)
138 2ewt_A BLDD, putative DNA-bind 26.6 38 0.0013 22.2 2.3 22 204-225 25-48 (71)
139 1xc0_A Pardaxin P-4, PA4; BEND 26.5 35 0.0012 20.1 1.8 20 13-32 5-24 (33)
140 1x57_A Endothelial differentia 26.2 37 0.0013 23.7 2.3 40 178-225 12-51 (91)
141 3s8q_A R-M controller protein; 25.9 35 0.0012 23.2 2.1 21 204-224 28-48 (82)
142 3qq6_A HTH-type transcriptiona 25.6 36 0.0012 23.3 2.1 21 203-223 26-46 (78)
143 2hin_A GP39, repressor protein 25.5 48 0.0016 23.3 2.7 21 203-223 13-33 (71)
144 1l0o_C Sigma factor; bergerat 25.1 15 0.00052 30.0 0.0 46 175-229 198-243 (243)
145 2pij_A Prophage PFL 6 CRO; tra 24.5 41 0.0014 22.0 2.2 22 203-224 16-37 (67)
146 2jqq_A Conserved oligomeric go 24.4 1E+02 0.0034 26.2 4.9 24 91-114 100-123 (204)
147 2ofy_A Putative XRE-family tra 23.7 40 0.0014 23.2 2.1 21 205-225 32-52 (86)
148 2jn6_A Protein CGL2762, transp 23.7 47 0.0016 23.7 2.5 46 174-226 4-49 (97)
149 3clo_A Transcriptional regulat 23.2 1E+02 0.0034 26.1 5.0 50 174-233 196-245 (258)
150 3bdn_A Lambda repressor; repre 22.9 1.1E+02 0.0036 25.2 5.0 19 205-223 35-53 (236)
151 3cec_A Putative antidote prote 22.1 45 0.0015 24.0 2.2 39 179-225 18-56 (104)
152 3ulq_B Transcriptional regulat 22.1 1.2E+02 0.0041 21.7 4.5 52 171-232 25-76 (90)
153 3op9_A PLI0006 protein; struct 21.4 49 0.0017 24.1 2.3 22 204-225 26-47 (114)
154 1b0n_A Protein (SINR protein); 21.3 48 0.0016 23.8 2.2 20 204-223 18-37 (111)
155 1uxc_A FRUR (1-57), fructose r 20.8 56 0.0019 22.2 2.3 22 204-225 4-25 (65)
156 2eby_A Putative HTH-type trans 20.4 53 0.0018 23.9 2.3 23 203-225 27-49 (113)
157 1u78_A TC3 transposase, transp 20.3 1.3E+02 0.0044 22.2 4.6 46 172-226 3-48 (141)
158 3ivp_A Putative transposon-rel 20.0 51 0.0017 24.6 2.1 22 204-225 29-50 (126)
No 1
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.77 E-value=2.1e-19 Score=135.92 Aligned_cols=66 Identities=44% Similarity=0.655 Sum_probs=61.9
Q ss_pred hhccCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCCCCcc
Q 024428 168 MKKRKKGKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWKPSED 234 (268)
Q Consensus 168 ~k~rkr~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~kp~~~ 234 (268)
.++|+|+.|++.++.+|+.||.+|..+|||+ ..+|..||..|||+..||.+||+|+|+|.++++.+
T Consensus 6 ~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs-~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~ 71 (83)
T 2dmn_A 6 SGKKRKGNLPAESVKILRDWMYKHRFKAYPS-EEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQ 71 (83)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHTTTTCCCC-HHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhccCCCCC-HHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHH
Confidence 3678889999999999999999999999999 99999999999999999999999999999987654
No 2
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.76 E-value=7.8e-19 Score=127.66 Aligned_cols=61 Identities=48% Similarity=0.786 Sum_probs=54.3
Q ss_pred CCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCCCCcc
Q 024428 173 KGKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWKPSED 234 (268)
Q Consensus 173 r~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~kp~~~ 234 (268)
.|+||++++.+|+.||.+|..+|||+ ..+|..||..+||+..||.+||+|+|+|.++++.+
T Consensus 2 ~g~f~~~~~~~L~~~f~~h~~~pyp~-~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 62 (67)
T 3k2a_A 2 SGIFPKVATNIMRAWLFQHLTHPYPS-EEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID 62 (67)
T ss_dssp ----CHHHHHHHHHHHHHTTTSCCCC-HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC--
T ss_pred CCcCCHHHHHHHHHHHHHhccCCCCC-HHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHH
Confidence 47899999999999999999999999 99999999999999999999999999999998865
No 3
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.75 E-value=4e-19 Score=136.05 Aligned_cols=61 Identities=41% Similarity=0.601 Sum_probs=57.5
Q ss_pred CCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCCCCcc
Q 024428 173 KGKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWKPSED 234 (268)
Q Consensus 173 r~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~kp~~~ 234 (268)
..-||++++.+|++||.+|..+|||+ +++|..||..|||+.+||+|||+|+|+|.|+++.+
T Consensus 9 ~~~l~~~~~~iL~~W~~~h~~npYPs-~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~ 69 (89)
T 2lk2_A 9 SHMLPKESVQILRDWLYEHRYNAYPS-EQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLR 69 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHTSGGGSCC-HHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHhccCCCCC-HHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHH
Confidence 45699999999999999999999999 99999999999999999999999999999987654
No 4
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=2e-18 Score=127.03 Aligned_cols=65 Identities=40% Similarity=0.716 Sum_probs=61.7
Q ss_pred hccCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCCCCcc
Q 024428 169 KKRKKGKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWKPSED 234 (268)
Q Consensus 169 k~rkr~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~kp~~~ 234 (268)
.+|+|..|++.+..+|+.||.+|..+|||+ ..++..||..+||+..||.+||+|+|.|.++++.+
T Consensus 7 ~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~-~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 71 (73)
T 1x2n_A 7 GKNKRGVLPKHATNVMRSWLFQHIGHPYPT-EDEKKQIAAQTNLTLLQVNNWFINARRRILQSGPS 71 (73)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHTTTSCCCC-HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHCcCHHHHHHHhHHHHhhccccccc
Confidence 577888999999999999999999999999 99999999999999999999999999999998765
No 5
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.72 E-value=8e-18 Score=120.65 Aligned_cols=62 Identities=34% Similarity=0.533 Sum_probs=58.6
Q ss_pred hccCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCCC
Q 024428 169 KKRKKGKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWKP 231 (268)
Q Consensus 169 k~rkr~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~kp 231 (268)
.+|+|..|++.+..+|+.||.+|..+|||+ ..++..||..+||+..||.+||+|+|.|.+|+
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~-~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~ 64 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPS-EEAKEELAKKCGITVSQVSNWFGNKRIRYKKN 64 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCC-HHHHHHHHHHHTSCHHHHHHHHHHHTTTSSCC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCC-HHHHHHHHHHHCcCHHHHHHHHHHHHHHhccC
Confidence 467888999999999999999999999999 99999999999999999999999999999874
No 6
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.70 E-value=3.3e-17 Score=123.67 Aligned_cols=65 Identities=25% Similarity=0.389 Sum_probs=58.1
Q ss_pred hccCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCCCCcc
Q 024428 169 KKRKKGKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWKPSED 234 (268)
Q Consensus 169 k~rkr~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~kp~~~ 234 (268)
|.+++.+|+..+..+|+.||..|..+|||+ ..++..||..+||+..||.+||+|+|+|.++...+
T Consensus 2 K~krr~rft~~q~~~Le~~f~~h~~~~yP~-~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~~ 66 (83)
T 1le8_B 2 KPYRGHRFTKENVRILESWFAKNIENPYLD-TKGLENLMKNTSLSRIQIKNWVAARRAKEKTITIA 66 (83)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHTSSSCCCC-HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhhCCCCCcC-HHHHHHHHHHHCCCHHHcccccHHHHccccccccC
Confidence 345566699999999999999999999999 99999999999999999999999999999987654
No 7
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.70 E-value=1.9e-17 Score=121.74 Aligned_cols=64 Identities=36% Similarity=0.586 Sum_probs=60.5
Q ss_pred ccCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCCCCcc
Q 024428 170 KRKKGKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWKPSED 234 (268)
Q Consensus 170 ~rkr~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~kp~~~ 234 (268)
+|+|..|++.+..+|+.||..|..+|||+ ..++..||..+||+..||.+||+|+|.|.++....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~-~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPS-EEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCC-HHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcC-HHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccc
Confidence 67889999999999999999999999999 99999999999999999999999999999887755
No 8
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.70 E-value=3.2e-17 Score=116.05 Aligned_cols=59 Identities=27% Similarity=0.467 Sum_probs=55.6
Q ss_pred CCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCCC
Q 024428 172 KKGKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWKP 231 (268)
Q Consensus 172 kr~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~kp 231 (268)
|++.|++++..+|+.||..|..+|||+ ..++..||..+||+..||.+||+|+|.|.++.
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~-~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLD-TKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCC-HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcC-HHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 467899999999999999988889999 99999999999999999999999999998764
No 9
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.69 E-value=2.9e-17 Score=124.59 Aligned_cols=64 Identities=36% Similarity=0.586 Sum_probs=60.1
Q ss_pred ccCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCCCCcc
Q 024428 170 KRKKGKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWKPSED 234 (268)
Q Consensus 170 ~rkr~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~kp~~~ 234 (268)
+|+|..|++.+..+|+.||..|..+|||+ ..++..||..+||+..||.+||+|+|.|.++....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~-~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 65 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPS-EEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCC-HHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCC-HHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcccc
Confidence 67889999999999999999999999999 99999999999999999999999999999988765
No 10
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.68 E-value=7.7e-17 Score=122.48 Aligned_cols=60 Identities=28% Similarity=0.478 Sum_probs=56.9
Q ss_pred hccCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcC
Q 024428 169 KKRKKGKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHW 229 (268)
Q Consensus 169 k~rkr~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~ 229 (268)
++|+|..|++.+..+|+.||..|+.+|||+ ..++..||..+||+..||.+||+|+|+|.+
T Consensus 27 ~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~-~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 27 KPYRGHRFTKENVRILESWFAKNIENPYLD-TKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp SCCTTCCCCHHHHHHHHHHHHHTTSSCCCC-HHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCcC-HHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 567788899999999999999999999999 999999999999999999999999999976
No 11
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.59 E-value=1.9e-15 Score=107.09 Aligned_cols=57 Identities=25% Similarity=0.421 Sum_probs=48.0
Q ss_pred hccCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcC
Q 024428 169 KKRKKGKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHW 229 (268)
Q Consensus 169 k~rkr~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~ 229 (268)
++|+|..|+..+..+|+.||..| |||+ ..++..||..+||+..||.+||+|+|.|.+
T Consensus 5 ~rr~Rt~ft~~q~~~Le~~f~~~---~yp~-~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 5 SPKGKSSISPQARAFLEEVFRRK---QSLN-SKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp -------CCHHHHHHHHHHHHHC---SSCC-HHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCHHHHHHHHHHHHhC---CCcC-HHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 56778899999999999999999 9999 999999999999999999999999999863
No 12
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.58 E-value=2.1e-15 Score=112.29 Aligned_cols=59 Identities=19% Similarity=0.232 Sum_probs=55.1
Q ss_pred cCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCCCCc
Q 024428 171 RKKGKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWKPSE 233 (268)
Q Consensus 171 rkr~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~kp~~ 233 (268)
+++++|++++..+|+.||..+ |||+ ..++..||..|||+..||.+||+|+|.|.++...
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~---~YPs-~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l 63 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQC---QWAR-REDYQKLEQITGLPRPEIIQWFGDTRYALKHGQL 63 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHC---SSCC-HHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCHHHHHHHHHHHHHC---CCCC-HHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHH
Confidence 467889999999999999999 9999 9999999999999999999999999999887654
No 13
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.55 E-value=1.1e-14 Score=104.91 Aligned_cols=61 Identities=30% Similarity=0.420 Sum_probs=57.2
Q ss_pred hccCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCCCCc
Q 024428 169 KKRKKGKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWKPSE 233 (268)
Q Consensus 169 k~rkr~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~kp~~ 233 (268)
++|+|..|+.++..+|+.||..+ |||+ ..++..||..+||+..||.+||+|+|.|.++...
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~~---~yp~-~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 63 (66)
T 1bw5_A 3 TTRVRTVLNEKQLHTLRTCYAAN---PRPD-ALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRSI 63 (66)
T ss_dssp CSCCCCCCSHHHHHHHHHHHHHC---SCCC-HHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHhcC---CCcC-HHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHhh
Confidence 57788899999999999999998 9999 9999999999999999999999999999987654
No 14
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.55 E-value=6.6e-15 Score=106.34 Aligned_cols=65 Identities=22% Similarity=0.393 Sum_probs=60.0
Q ss_pred ccCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCCCCcchhhh
Q 024428 170 KRKKGKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWKPSEDMQFM 238 (268)
Q Consensus 170 ~rkr~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~kp~~~~~~~ 238 (268)
+|+|..|+..+..+|+.+|..+ |||+ ..++..||..+||+..||.+||+|+|.|.++...+.+|.
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~---~yp~-~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~~~q~~ 66 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVN---CYPG-IDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHRESQFL 66 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTC---SSCC-HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCCTTCCC
T ss_pred cCCCCCCCHHHHHHHHHHHHhc---CCCC-HHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhchhcccc
Confidence 5788899999999999999887 9999 999999999999999999999999999999887776654
No 15
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.52 E-value=1.8e-14 Score=102.17 Aligned_cols=58 Identities=28% Similarity=0.468 Sum_probs=52.3
Q ss_pred hccCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCC
Q 024428 169 KKRKKGKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWK 230 (268)
Q Consensus 169 k~rkr~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~k 230 (268)
++|+|..|+..+..+|+.+|..+ |||+ ..++..||..+||+..||.+||+|+|.|.++
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~---~yp~-~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNEN---RYLT-ERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHC---SSCC-HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHcc---CCCC-HHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 57888999999999999999998 9999 9999999999999999999999999999876
No 16
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.52 E-value=2.6e-14 Score=104.17 Aligned_cols=61 Identities=20% Similarity=0.375 Sum_probs=57.1
Q ss_pred hccCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCCCCc
Q 024428 169 KKRKKGKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWKPSE 233 (268)
Q Consensus 169 k~rkr~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~kp~~ 233 (268)
.+|+|..|+..+..+|+.+|..+ |||+ ..++..||..+||+..||.+||+|+|.|.++...
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~~---~yp~-~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~ 67 (70)
T 2cra_A 7 GRKKRIPYSKGQLRELEREYAAN---KFIT-KDKRRKISAATSLSERQITIWFQNRRVKEKKSGP 67 (70)
T ss_dssp CCCSCCCSCHHHHHHHHHHHHHC---SSCC-HHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSCT
T ss_pred CCCCCCcCCHHHHHHHHHHHHhc---CCCC-HHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccCC
Confidence 57788899999999999999998 9999 9999999999999999999999999999987654
No 17
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=2.4e-14 Score=104.27 Aligned_cols=61 Identities=20% Similarity=0.430 Sum_probs=56.7
Q ss_pred hccCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCCCCc
Q 024428 169 KKRKKGKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWKPSE 233 (268)
Q Consensus 169 k~rkr~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~kp~~ 233 (268)
.+|+|..|+..+..+|+.+|..+ |||+ ..++..||..+||+..||.+||+|+|.|.++...
T Consensus 7 ~rr~Rt~ft~~q~~~Le~~F~~~---~yp~-~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2dmu_A 7 GRRHRTIFTDEQLEALENLFQET---KYPD-VGTREQLARKVHLREEKVEVWFKNRRAKWRRSGP 67 (70)
T ss_dssp SCCCCCCCCHHHHHHHHHHHHHC---SSCC-HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTST
T ss_pred CCCCCCCCCHHHHHHHHHHHHcc---CCCC-HHHHHHHHHHHCCCHHHeehccccccccccccCC
Confidence 57788899999999999999998 9999 9999999999999999999999999999886543
No 18
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.50 E-value=3.7e-14 Score=103.16 Aligned_cols=61 Identities=20% Similarity=0.410 Sum_probs=57.3
Q ss_pred hccCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCCCCc
Q 024428 169 KKRKKGKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWKPSE 233 (268)
Q Consensus 169 k~rkr~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~kp~~ 233 (268)
++|+|..|+..+..+|+.+|..+ |||+ ..++..||..+||+..||.+||+|+|.|.++...
T Consensus 7 ~rr~Rt~ft~~q~~~Le~~F~~~---~yp~-~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da2_A 7 GRSSRTRFTDYQLRVLQDFFDAN---AYPK-DDEFEQLSNLLNLPTRVIVVWFQNARQKARKSGP 67 (70)
T ss_dssp SCCCCCCCCHHHHHHHHHHHHHC---SSCC-HHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCSS
T ss_pred CCCCCCCCCHHHHHHHHHHHHcC---CCcC-HHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhccc
Confidence 57788899999999999999998 9999 9999999999999999999999999999988654
No 19
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.50 E-value=2.7e-14 Score=100.09 Aligned_cols=57 Identities=18% Similarity=0.344 Sum_probs=53.5
Q ss_pred ccCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCC
Q 024428 170 KRKKGKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWK 230 (268)
Q Consensus 170 ~rkr~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~k 230 (268)
+|+|..|+..+..+|+.+|..+ |||+ ..++..||..+||+..||.+||+|+|.|.++
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~---~yp~-~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQK---QYLS-IAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHC---SCCC-HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcC---CCcC-HHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 4678899999999999999998 9999 9999999999999999999999999998764
No 20
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=7.9e-15 Score=109.56 Aligned_cols=63 Identities=13% Similarity=0.251 Sum_probs=57.9
Q ss_pred hccCCCCCCHHHHHHHHHHHHhc-cCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCCCC
Q 024428 169 KKRKKGKLPKEARQQLLDWWSKH-YKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWKPS 232 (268)
Q Consensus 169 k~rkr~~lpk~~~~~L~~w~~~h-~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~kp~ 232 (268)
++|+|..|+.++..+|+.||..+ ..+|||+ ..++..||..+||+..||.+||+|+|.|.++..
T Consensus 8 ~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~-~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 8 ALQDRTQFSDRDLATLKKYWDNGMTSLGSVC-REKIEAVATELNVDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTTTTCCSHHH-HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCCCcC-HHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhcc
Confidence 56788889999999999999887 6779999 999999999999999999999999999988743
No 21
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=3.1e-14 Score=103.74 Aligned_cols=61 Identities=23% Similarity=0.347 Sum_probs=56.9
Q ss_pred hccCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCCCCc
Q 024428 169 KKRKKGKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWKPSE 233 (268)
Q Consensus 169 k~rkr~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~kp~~ 233 (268)
.+|+|..|+..+..+|+.+|..+ |||+ ..++..||..+||+..||.+||+|+|.|.++...
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~~---~yp~-~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2djn_A 7 GRKPRTIYSSFQLAALQRRFQKT---QYLA-LPERAELAASLGLTQTQVKIWFQNKRSKIKKSGP 67 (70)
T ss_dssp CCCSSCSSCHHHHHHHHHHHTTC---SSCC-HHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSSS
T ss_pred CCCCCCCCCHHHHHHHHHHHcCC---CCCC-HHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccCC
Confidence 57788899999999999999888 9999 9999999999999999999999999999987553
No 22
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.50 E-value=2.8e-14 Score=101.86 Aligned_cols=58 Identities=24% Similarity=0.362 Sum_probs=53.8
Q ss_pred hccCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCC
Q 024428 169 KKRKKGKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWK 230 (268)
Q Consensus 169 k~rkr~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~k 230 (268)
.+|+|..|+..+..+|+.+|..+ |||+ ..++..||..+||+..||.+||+|+|.+.++
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~---~yp~-~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk 60 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLFN---KYIS-RPRRVELAVMLNLTERHIKIWFQNRRMKWKK 60 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHC---SSCC-HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHhcC---CCcC-HHHHHHHHHHhCcCHHHhhHHHHhhhhhhhh
Confidence 57888999999999999999998 9999 9999999999999999999999999999875
No 23
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.49 E-value=3.2e-14 Score=100.53 Aligned_cols=57 Identities=23% Similarity=0.397 Sum_probs=53.4
Q ss_pred ccCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCC
Q 024428 170 KRKKGKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWK 230 (268)
Q Consensus 170 ~rkr~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~k 230 (268)
+|+|..|+..+...|+.+|..+ |||+ ..++..||..+||+..||.+||+|+|.|.++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~---~yp~-~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 58 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKE---NYVS-RPRRCELAAQLNLPESTIKVWFQNRRMKDKR 58 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHC---SCCC-HHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHc---CCCC-HHHHHHHHHHHCcCHHHHHHhhHHHHhHhhc
Confidence 4678899999999999999998 9999 9999999999999999999999999999765
No 24
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.49 E-value=2.7e-14 Score=103.83 Aligned_cols=61 Identities=25% Similarity=0.445 Sum_probs=57.1
Q ss_pred hccCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCCCCc
Q 024428 169 KKRKKGKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWKPSE 233 (268)
Q Consensus 169 k~rkr~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~kp~~ 233 (268)
.+|+|..|+.++..+|+.+|..+ |||+ ..++..||..+||+..||.+||+|+|.|.++...
T Consensus 7 ~rr~Rt~ft~~q~~~Le~~F~~~---~yp~-~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da1_A 7 GKRPRTRITDDQLRVLRQYFDIN---NSPS-EEQIKEMADKSGLPQKVIKHWFRNTLFKERQSGP 67 (70)
T ss_dssp CCSCSCCCCHHHHHHHHHHHHHC---SSCC-TTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHC---CCCC-HHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhcc
Confidence 57788899999999999999998 9999 9999999999999999999999999999987654
No 25
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.49 E-value=2.9e-14 Score=103.89 Aligned_cols=60 Identities=20% Similarity=0.386 Sum_probs=55.7
Q ss_pred hccCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCCCC
Q 024428 169 KKRKKGKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWKPS 232 (268)
Q Consensus 169 k~rkr~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~kp~ 232 (268)
.+|+|..|+..+..+|+.+|..+ |||+ ..++..||..+||+..||.+||+|+|.|.++..
T Consensus 7 ~~r~R~~ft~~q~~~Le~~F~~~---~yp~-~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 7 GKGGQVRFSNDQTIELEKKFETQ---KYLS-PPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHC---SSCC-HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCHHHHHHHHHHHHcC---CCcC-HHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 56788899999999999999988 9999 999999999999999999999999999987643
No 26
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.49 E-value=4.1e-14 Score=98.77 Aligned_cols=57 Identities=21% Similarity=0.347 Sum_probs=53.5
Q ss_pred hccCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcC
Q 024428 169 KKRKKGKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHW 229 (268)
Q Consensus 169 k~rkr~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~ 229 (268)
++|+|..|+..+..+|+.+|..+ |||+ ..++..||..+||+..||.+||+|+|.|.+
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~---~yp~-~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQ---RYLS-APERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTC---SSCC-HHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHc---CCCC-HHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 56788999999999999999877 9999 999999999999999999999999999864
No 27
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.49 E-value=5e-14 Score=100.16 Aligned_cols=58 Identities=28% Similarity=0.389 Sum_probs=51.3
Q ss_pred hccCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCC
Q 024428 169 KKRKKGKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWK 230 (268)
Q Consensus 169 k~rkr~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~k 230 (268)
++|+|..|+..+...|+.+|..+ |||+ ..++..||..+||+..||.+||+|+|.|.++
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~~---~yp~-~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr 60 (62)
T 2vi6_A 3 KQKMRTVFSQAQLCALKDRFQKQ---KYLS-LQQMQELSSILNLSYKQVKTWFQNQRMKCKR 60 (62)
T ss_dssp -----CCCCHHHHHHHHHHHHHC---SCCC-HHHHHHHHHHHTCCHHHHHHHHHHHHHTCGG
T ss_pred CCCCCCCCCHHHHHHHHHHHHhC---CCCC-HHHHHHHHHHhCCCHHHhhHHhHHhhcchhh
Confidence 56788899999999999999988 9999 9999999999999999999999999999875
No 28
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=7.2e-14 Score=104.39 Aligned_cols=61 Identities=26% Similarity=0.434 Sum_probs=57.0
Q ss_pred hccCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCCCCc
Q 024428 169 KKRKKGKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWKPSE 233 (268)
Q Consensus 169 k~rkr~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~kp~~ 233 (268)
.+|+|..|+..+..+|+.+|..+ |||+ ..++..||..+||+..||.+||+|+|.|.++...
T Consensus 17 ~rr~Rt~ft~~Q~~~Le~~F~~~---~yp~-~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~~ 77 (80)
T 2dmt_A 17 GRRSRTVFTELQLMGLEKRFEKQ---KYLS-TPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSGP 77 (80)
T ss_dssp CCCSCCCCCHHHHHHHHHHHHHC---SSCC-HHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCCS
T ss_pred CCCCCCCCCHHHHHHHHHHHHhc---CCCC-HHHHHHHHHHhCCCHHHeeeccHHHHHHhhcccC
Confidence 46778899999999999999998 9999 9999999999999999999999999999988654
No 29
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.47 E-value=4.3e-14 Score=105.75 Aligned_cols=60 Identities=25% Similarity=0.434 Sum_probs=55.8
Q ss_pred hhccCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCCC
Q 024428 168 MKKRKKGKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWKP 231 (268)
Q Consensus 168 ~k~rkr~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~kp 231 (268)
.++|+|..|+..+..+|+.||..+ |||+ ..++..||..+||+..||.+||+|+|.|.++-
T Consensus 17 ~~rr~Rt~ft~~Q~~~Le~~F~~~---~yp~-~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~ 76 (81)
T 1fjl_A 17 KQRRSRTTFSASQLDELERAFERT---QYPD-IYTREELAQRTNLTEARIQVWFQNRRARLRKQ 76 (81)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHC---SSCC-HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHc---CCCC-HHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhh
Confidence 357788899999999999999988 9999 99999999999999999999999999998763
No 30
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.47 E-value=7.4e-14 Score=102.63 Aligned_cols=62 Identities=18% Similarity=0.354 Sum_probs=57.9
Q ss_pred hccCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCCCCcc
Q 024428 169 KKRKKGKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWKPSED 234 (268)
Q Consensus 169 k~rkr~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~kp~~~ 234 (268)
.+|+|..|+..+..+|+.+|..+ |||+ ..++..||..+||+..||.+||+|+|.|.++....
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~~---~yp~-~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 68 (73)
T 2l7z_A 7 GRKKRVPYTKVQLKELEREYATN---KFIT-KDKRRRISATTNLSERQVTIWFQNRRVKEKKVINK 68 (73)
T ss_dssp CCCCCCCSCHHHHHHHHHHHHHT---SCCC-HHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSSSS
T ss_pred CCCCCCCCCHHHHHHHHHHHhhC---CCcC-HHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHhcc
Confidence 46788899999999999999998 9999 99999999999999999999999999999887654
No 31
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.47 E-value=3.9e-14 Score=105.43 Aligned_cols=60 Identities=23% Similarity=0.381 Sum_probs=56.4
Q ss_pred hccCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCCCC
Q 024428 169 KKRKKGKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWKPS 232 (268)
Q Consensus 169 k~rkr~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~kp~ 232 (268)
++|+|..|+.++..+|+.+|..+ |||+ ..++..||..+||+..||.+||+|+|.|.++..
T Consensus 17 ~rr~Rt~ft~~Ql~~Le~~f~~~---~yp~-~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 17 DKRLRTTITPEQLEILYQKYLLD---SNPT-RKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CTTCCSSCCTTTHHHHHHHHHHC---SSCC-HHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhc---CCCC-HHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 56788899999999999999998 9999 999999999999999999999999999998754
No 32
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.47 E-value=6.1e-14 Score=101.68 Aligned_cols=62 Identities=19% Similarity=0.376 Sum_probs=57.5
Q ss_pred hccCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCCCCcc
Q 024428 169 KKRKKGKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWKPSED 234 (268)
Q Consensus 169 k~rkr~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~kp~~~ 234 (268)
++|+|..|+..+..+|+.+|..+ |||+ ..++..||..+||+..||.+||+|+|.+.++...+
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~---~yp~-~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~~ 63 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQ---KYLS-APEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKD 63 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHS---SSCC-HHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCccCHHHHHHHHHHHHhC---CCCC-HHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhhH
Confidence 56788899999999999999988 9999 99999999999999999999999999999876544
No 33
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=5.8e-14 Score=104.66 Aligned_cols=60 Identities=20% Similarity=0.400 Sum_probs=56.5
Q ss_pred hccCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCCCC
Q 024428 169 KKRKKGKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWKPS 232 (268)
Q Consensus 169 k~rkr~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~kp~ 232 (268)
++|+|..|+.++..+|+.+|..+ |||+ ..++..||..+||+..||.+||+|+|.|.++..
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~~---~yp~-~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (80)
T 2dmq_A 7 GKRMRTSFKHHQLRTMKSYFAIN---HNPD-AKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNL 66 (80)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHC---SSCC-HHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHc---CCCC-HHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHH
Confidence 57888999999999999999998 9999 999999999999999999999999999998744
No 34
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.46 E-value=4.6e-14 Score=102.38 Aligned_cols=61 Identities=21% Similarity=0.393 Sum_probs=56.8
Q ss_pred hccCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCCCCc
Q 024428 169 KKRKKGKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWKPSE 233 (268)
Q Consensus 169 k~rkr~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~kp~~ 233 (268)
++|+|..|+..+...|+.+|..+ |||+ ..++..||..+||+..||.+||+|+|.|.++...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~---~yp~-~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~ 62 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFN---RYLT-RRRRIEIAHALSLTERQIKIWFQNRRMKWKKENK 62 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHC---SSCC-TTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCcCHHHHHHHHHHHccC---CCCC-HHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhcc
Confidence 57888999999999999999988 9999 9999999999999999999999999999886543
No 35
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.45 E-value=1e-13 Score=103.43 Aligned_cols=62 Identities=18% Similarity=0.366 Sum_probs=57.8
Q ss_pred hccCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCCCCcc
Q 024428 169 KKRKKGKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWKPSED 234 (268)
Q Consensus 169 k~rkr~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~kp~~~ 234 (268)
.+|+|..|+..+..+|+.+|..+ |||+ ..++..||..+||+..||.+||+|+|.|.++....
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~~---~yp~-~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~~ 68 (80)
T 2dms_A 7 GRRERTTFTRAQLDVLEALFAKT---RYPD-IFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQ 68 (80)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHC---SSCC-HHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTCS
T ss_pred CCCCCCCCCHHHHHHHHHHHHcc---CCCC-HHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHHc
Confidence 57788899999999999999998 9999 99999999999999999999999999999876654
No 36
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.45 E-value=1.2e-13 Score=97.54 Aligned_cols=56 Identities=25% Similarity=0.379 Sum_probs=49.7
Q ss_pred CCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCCC
Q 024428 172 KKGKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWKP 231 (268)
Q Consensus 172 kr~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~kp 231 (268)
.|..|+..+..+|+.+|..+ |||+ ..++..||..+||+..||.+||+|+|.|.++-
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~---~yp~-~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~ 57 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRT---HYPD-VFTREELAMKIGLTEARIQVWFQNRRAKWRKQ 57 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHC---SSCC-HHHHHHHHHHHTSCHHHHHHHHHHHHHHHC--
T ss_pred CCcccCHHHHHHHHHHHHcC---CCcC-HHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhh
Confidence 35679999999999999988 9999 99999999999999999999999999998864
No 37
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.44 E-value=1.1e-13 Score=102.71 Aligned_cols=60 Identities=22% Similarity=0.374 Sum_probs=55.6
Q ss_pred hccCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCCCC
Q 024428 169 KKRKKGKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWKPS 232 (268)
Q Consensus 169 k~rkr~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~kp~ 232 (268)
++|+|..|+..+..+|+.+|..+ |||+ ..++..||..+||+..||.+||+|+|.|.++..
T Consensus 9 ~rr~Rt~ft~~Q~~~Le~~F~~~---~yp~-~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~ 68 (77)
T 1nk2_P 9 KRKRRVLFTKAQTYELERRFRQQ---RYLS-APEREHLASLIRLTPTQVKIWFQNHRYKTKRAQ 68 (77)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHC---SCCC-HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCccCCHHHHHHHHHHHhhc---CCCC-HHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhh
Confidence 46778889999999999999998 9999 999999999999999999999999999987643
No 38
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.44 E-value=8.8e-14 Score=100.82 Aligned_cols=60 Identities=22% Similarity=0.387 Sum_probs=55.8
Q ss_pred hccCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCCCC
Q 024428 169 KKRKKGKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWKPS 232 (268)
Q Consensus 169 k~rkr~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~kp~ 232 (268)
.+|+|..|+..+..+|+.+|..+ |||+ ..++..||..+||+..||.+||+|+|.|.++..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~---~yp~-~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~ 61 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQG---RYLT-APRLADLSAKLALGTAQVKIWFKNRRRRHKIQS 61 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTC---SSCC-HHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhcC---CCcC-HHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHh
Confidence 46788999999999999999888 9999 999999999999999999999999999987643
No 39
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=1.7e-13 Score=101.38 Aligned_cols=61 Identities=21% Similarity=0.396 Sum_probs=56.4
Q ss_pred ccCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCCCCcc
Q 024428 170 KRKKGKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWKPSED 234 (268)
Q Consensus 170 ~rkr~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~kp~~~ 234 (268)
.+.|..|++++..+|+.+|..+ |||+ ..++..||..+||+..||.+||+|+|.|.++....
T Consensus 9 ~~~R~~ft~~Ql~~Le~~F~~~---~yp~-~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~~ 69 (76)
T 2dn0_A 9 SIYKNKKSHEQLSALKGSFCRN---QFPG-QSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKGS 69 (76)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHS---SSCC-SHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCSS
T ss_pred CCCCccCCHHHHHHHHHHHhcC---CCcC-HHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhccc
Confidence 3457889999999999999998 9999 99999999999999999999999999999986654
No 40
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.43 E-value=2e-13 Score=102.41 Aligned_cols=62 Identities=15% Similarity=0.338 Sum_probs=56.2
Q ss_pred hccCCCCCCHHHHHHHHHHHHh-ccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCCC
Q 024428 169 KKRKKGKLPKEARQQLLDWWSK-HYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWKP 231 (268)
Q Consensus 169 k~rkr~~lpk~~~~~L~~w~~~-h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~kp 231 (268)
++|+|..|+.++...|+.+|.. ++.+|||+ ..++..||..+||+..||.+||+|+|.+.++.
T Consensus 17 ~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~-~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~~ 79 (80)
T 1wh5_A 17 RKRHRTKFTAEQKERMLALAERIGWRIQRQD-DEVIQRFCQETGVPRQVLKVWLHNNKHSGPSS 79 (80)
T ss_dssp SCCCSCCCCHHHHHHHHHHHHHHTSCCCTTT-HHHHHHHHHHSCCCHHHHHHHHHHHSSSSSCC
T ss_pred CCCCCccCCHHHHHHHHHHHHhccCcCCCcC-HHHHHHHHHHhCCCcccccCCccccCcCCCCC
Confidence 5778889999999999999997 34459999 99999999999999999999999999998764
No 41
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.43 E-value=3.6e-14 Score=102.81 Aligned_cols=61 Identities=26% Similarity=0.461 Sum_probs=56.4
Q ss_pred hccCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCCCCc
Q 024428 169 KKRKKGKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWKPSE 233 (268)
Q Consensus 169 k~rkr~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~kp~~ 233 (268)
++|+|..|+..+..+|+.+|..+ |||+ ..++..||..+||+..||.+||+|+|.|.++...
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~---~yp~-~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~ 63 (68)
T 1yz8_P 3 QRRQRTHFTSQQLQQLEATFQRN---RYPD-MSTREEIAVWTNLTEARVRVWFKNRRAKWRKREE 63 (68)
T ss_dssp SSCSCCCCCHHHHHHHHHHHTTC---SSCC-TTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHcc---CCCC-HHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhh
Confidence 57888999999999999999888 9999 9999999999999999999999999999876443
No 42
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.43 E-value=2.9e-13 Score=101.72 Aligned_cols=61 Identities=25% Similarity=0.345 Sum_probs=56.9
Q ss_pred hccCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCCCCc
Q 024428 169 KKRKKGKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWKPSE 233 (268)
Q Consensus 169 k~rkr~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~kp~~ 233 (268)
++|+|..|+..+..+|+.+|..+ |||+ ..++..||..+||+..||.+||+|+|.|.++-..
T Consensus 22 ~rr~Rt~ft~~Q~~~Le~~F~~~---~yp~-~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~k 82 (84)
T 2kt0_A 22 KQKTRTVFSSTQLCVLNDRFQRQ---KYLS-LQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQK 82 (84)
T ss_dssp SCCCSSCCCHHHHHHHHHHHHHS---SSCC-HHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhC---CCCC-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhh
Confidence 57788899999999999999998 9999 9999999999999999999999999999887543
No 43
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.42 E-value=1.3e-13 Score=103.05 Aligned_cols=61 Identities=21% Similarity=0.397 Sum_probs=56.8
Q ss_pred hccCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCCCCc
Q 024428 169 KKRKKGKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWKPSE 233 (268)
Q Consensus 169 k~rkr~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~kp~~ 233 (268)
.+|+|..|+..+..+|+.+|..+ |||+ ..++..||..+||+..||.+||+|+|.|.++...
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~~---~yp~-~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 67 (80)
T 2cue_A 7 GQRNRTSFTQEQIEALEKEFERT---HYPD-VFARERLAAKIDLPEARIQVWFSNRRAKWRREEK 67 (80)
T ss_dssp SCCCCCCSCHHHHHHHHHHHTTC---SSCC-HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccCHHHHHHHHHHHhcc---CCCC-HHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhh
Confidence 57888899999999999999888 9999 9999999999999999999999999999987554
No 44
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.42 E-value=2.1e-13 Score=114.75 Aligned_cols=63 Identities=19% Similarity=0.360 Sum_probs=54.5
Q ss_pred hhhccCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCCCCc
Q 024428 167 FMKKRKKGKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWKPSE 233 (268)
Q Consensus 167 ~~k~rkr~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~kp~~ 233 (268)
...+|+|..|+..+..+|+.||..+ |||+ ..++..||..+||+..||.+||+|+|+|.++...
T Consensus 95 ~~~rr~Rt~ft~~q~~~Le~~F~~~---~yp~-~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~~ 157 (164)
T 2d5v_A 95 NTPKKPRLVFTDVQRRTLHAIFKEN---KRPS-KELQITISQQLGLELSTVSNFFMNARRRSLDKWL 157 (164)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHC---SSCC-HHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC--
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcC---CCCC-HHHHHHHHHHHCcCHHHhhhcChhhhccccccCC
Confidence 3457888999999999999999999 9999 9999999999999999999999999999987654
No 45
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.42 E-value=1.8e-13 Score=100.55 Aligned_cols=61 Identities=25% Similarity=0.415 Sum_probs=56.6
Q ss_pred hccCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCCCCc
Q 024428 169 KKRKKGKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWKPSE 233 (268)
Q Consensus 169 k~rkr~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~kp~~ 233 (268)
++|+|..|+..+..+|+.+|..+ |||+ ..++..||..+||+..||.+||+|+|.|.++...
T Consensus 9 ~rr~Rt~ft~~q~~~Le~~F~~~---~yp~-~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r 69 (75)
T 2m0c_A 9 KRRNRTTFTSYQLEELEKVFQKT---HYPD-VYAREQLAMRTDLTEARVQVWFQNRRAKWRKRER 69 (75)
T ss_dssp CCSCSCSSCHHHHHHHHHHHHHC---SSCC-HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhc---CCCC-HHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHh
Confidence 56778889999999999999988 9999 9999999999999999999999999999887543
No 46
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.42 E-value=2.7e-13 Score=101.63 Aligned_cols=60 Identities=20% Similarity=0.386 Sum_probs=53.6
Q ss_pred hccCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCCCC
Q 024428 169 KKRKKGKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWKPS 232 (268)
Q Consensus 169 k~rkr~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~kp~ 232 (268)
++|+|..|+..+..+|+.+|..+ |||+ ..++..||..+||+..||.+||+|+|.|.++..
T Consensus 20 ~rr~Rt~ft~~Ql~~Le~~F~~~---~yp~-~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 20 RRRGRQTYTRYQTLELEKEFHTN---HYLT-RRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp ----CCCCCHHHHHHHHHHHHHC---SSCC-HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCcccCHHHHHHHHHHHhcC---CCCC-HHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 57788899999999999999998 9999 999999999999999999999999999988754
No 47
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.41 E-value=2.4e-13 Score=100.79 Aligned_cols=60 Identities=20% Similarity=0.325 Sum_probs=55.8
Q ss_pred hccCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCCCC
Q 024428 169 KKRKKGKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWKPS 232 (268)
Q Consensus 169 k~rkr~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~kp~ 232 (268)
.+|+|..|+..+..+|+.+|..+ |||+ ..++..||..+||+..||.+||+|+|.+.++..
T Consensus 13 ~rr~Rt~ft~~Q~~~Le~~F~~~---~yp~-~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 72 (77)
T 1puf_A 13 TRKKRCPYTKHQTLELEKEFLFN---MYLT-RDRRYEVARLLNLTERQVKIWFQNRRMKMKKIN 72 (77)
T ss_dssp TSCCCCCCCHHHHHHHHHHHHHC---SSCC-HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHhcc---CCCC-HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhh
Confidence 56788899999999999999998 9999 999999999999999999999999999987643
No 48
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.41 E-value=4.4e-13 Score=102.63 Aligned_cols=60 Identities=18% Similarity=0.259 Sum_probs=54.1
Q ss_pred CCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCCCCcchh
Q 024428 173 KGKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWKPSEDMQ 236 (268)
Q Consensus 173 r~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~kp~~~~~ 236 (268)
...++.++..+|+.+|..+ +||+ ..++..||..+||+..||.+||+|+|.|.++......
T Consensus 15 ~k~~t~~Ql~~Le~~F~~~---~yp~-~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~~~~~ 74 (89)
T 2ecb_A 15 FKEKTAEQLRVLQASFLNS---SVLT-DEELNRLRAQTKLTRREIDAWFTEKKKSKALKEEKME 74 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHC---SSCC-HHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCSCCC
T ss_pred hccCCHHHHHHHHHHHHhc---CCCC-HHHHHHHHHHhCcChHHCeecccccchHHHHHHHHhh
Confidence 3479999999999999998 9999 9999999999999999999999999999877655433
No 49
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.41 E-value=2.5e-13 Score=99.39 Aligned_cols=58 Identities=16% Similarity=0.293 Sum_probs=53.8
Q ss_pred cCCCCCCHHHHHHHHHHHHh-ccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCCCC
Q 024428 171 RKKGKLPKEARQQLLDWWSK-HYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWKPS 232 (268)
Q Consensus 171 rkr~~lpk~~~~~L~~w~~~-h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~kp~ 232 (268)
++|..|+..+..+|+.+|.. + |||+ ..++..||..+||+..||.+||+|+|.|.++..
T Consensus 3 k~Rt~ft~~Q~~~Le~~F~~~~---~yp~-~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 3 EGAATMTEDQVEILEYNFNKVN---KHPD-PTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHSSC---SSCC-HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHHccC---CCCC-HHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 57788999999999999985 7 9999 999999999999999999999999999987643
No 50
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.40 E-value=2.7e-13 Score=104.27 Aligned_cols=61 Identities=20% Similarity=0.440 Sum_probs=56.8
Q ss_pred hccCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCCCCc
Q 024428 169 KKRKKGKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWKPSE 233 (268)
Q Consensus 169 k~rkr~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~kp~~ 233 (268)
++|+|..|+..+...|+.+|..+ |||+ ..++..||..+||+..||.+||+|+|.|.++...
T Consensus 17 ~rr~Rt~ft~~Ql~~Le~~F~~~---~yp~-~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 77 (93)
T 3a01_A 17 RKKPRTSFTRIQVAELEKRFHKQ---KYLA-SAERAALARGLKMTDAQVKTWFQNRRTKWRRQTA 77 (93)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHC---SCCC-HHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCcCCCHHHHHHHHHHHHcC---CCcC-HHHHHHHHHHhCCChhhcccccHhhhhhhhhhhH
Confidence 57788899999999999999998 9999 9999999999999999999999999999887543
No 51
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.39 E-value=3.4e-13 Score=94.06 Aligned_cols=52 Identities=19% Similarity=0.448 Sum_probs=48.8
Q ss_pred CCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCC
Q 024428 175 KLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWK 230 (268)
Q Consensus 175 ~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~k 230 (268)
.|+..+...|+.+|..+ |||+ ..++..||..+||+..||.+||+|+|.|.++
T Consensus 3 ~ft~~Ql~~Le~~F~~~---~yp~-~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr 54 (56)
T 3a03_A 3 SFSRSQVLELERRFLRQ---KYLA-SAERAALAKALRMTDAQVKTWFQNRRTKWRR 54 (56)
T ss_dssp -CCHHHHHHHHHHHHHC---SSCC-HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhc---CCcC-HHHHHHHHHHhCcCHHHhhHhhHHhhhhhcc
Confidence 58899999999999998 9999 9999999999999999999999999999765
No 52
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=4.3e-13 Score=99.09 Aligned_cols=59 Identities=20% Similarity=0.358 Sum_probs=54.4
Q ss_pred cCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCCCCc
Q 024428 171 RKKGKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWKPSE 233 (268)
Q Consensus 171 rkr~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~kp~~ 233 (268)
+|+.+++.++..+|+.+|..+ |||+ ..++..||..+||+..||.+||+|+|.|.++...
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~---~yp~-~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~ 67 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQN---PLPL-DEELDRLRSETKMTRREIDSWFSERRKKVNAEET 67 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHC---SSCC-HHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSC
T ss_pred CCCccCCHHHHHHHHHHHhcc---CCCC-HHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhh
Confidence 466679999999999999998 9999 9999999999999999999999999999887543
No 53
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.39 E-value=4.1e-13 Score=98.56 Aligned_cols=59 Identities=15% Similarity=0.255 Sum_probs=54.1
Q ss_pred ccCCCCCCHHHHHHHHHHHHh-ccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCCCC
Q 024428 170 KRKKGKLPKEARQQLLDWWSK-HYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWKPS 232 (268)
Q Consensus 170 ~rkr~~lpk~~~~~L~~w~~~-h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~kp~ 232 (268)
.++|..|+..+..+|+.+|.. + |||+ ..++..||..+||+..||.+||+|+|.|.++..
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~---~yp~-~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVN---KHPD-PTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTT---SSCC-HHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcC---CCCC-HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 467788999999999999994 8 9999 999999999999999999999999999987643
No 54
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.39 E-value=3e-13 Score=104.24 Aligned_cols=61 Identities=21% Similarity=0.446 Sum_probs=56.8
Q ss_pred hccCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhC---------------CChhhhhhhhhhhhhhcCCCCc
Q 024428 169 KKRKKGKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTG---------------LDSKQINNWFINQRKRHWKPSE 233 (268)
Q Consensus 169 k~rkr~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tg---------------L~~~QV~nWF~N~R~R~~kp~~ 233 (268)
++|+|..|++.+..+|+.||..+ |||+ ..++..||..+| |+..||.+||+|+|.|.++...
T Consensus 7 ~rr~R~~ft~~ql~~Le~~F~~~---~yP~-~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~ 82 (95)
T 2cuf_A 7 GRGSRFTWRKECLAVMESYFNEN---QYPD-EAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRAN 82 (95)
T ss_dssp CCCCSCCCCHHHHHHHHHHHHHC---SSCC-HHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHhcC---CCCC-HHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhh
Confidence 57788899999999999999998 9999 999999999999 9999999999999999986543
No 55
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.38 E-value=5.6e-13 Score=110.91 Aligned_cols=58 Identities=21% Similarity=0.474 Sum_probs=54.9
Q ss_pred hccCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCC
Q 024428 169 KKRKKGKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWK 230 (268)
Q Consensus 169 k~rkr~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~k 230 (268)
++|+|..|+..+..+|+.||..+ |||+ ..++..||..+||+..||.+||+|+|.|.+|
T Consensus 93 ~rr~Rt~ft~~q~~~Le~~F~~~---~yp~-~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 93 KRKRRTSFTPQAIEALNAYFEKN---PLPT-GQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHC---SSCC-HHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCcccCHHHHHHHHHHHHhc---CCCC-HHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 56678889999999999999998 9999 9999999999999999999999999999876
No 56
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.38 E-value=4.2e-13 Score=97.02 Aligned_cols=51 Identities=27% Similarity=0.492 Sum_probs=48.3
Q ss_pred CCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCC
Q 024428 176 LPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWK 230 (268)
Q Consensus 176 lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~k 230 (268)
-++++...|+..|..+ |||+ ..++..||..|||+..||.+||+|+|.+.++
T Consensus 11 ~~~~Ql~~LE~~F~~~---~YPs-~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kk 61 (66)
T 3nau_A 11 KTKEQIAHLKASFLQS---QFPD-DAEVYRLIEVTGLARSEIKKWFSDHRYRCQR 61 (66)
T ss_dssp CCHHHHHHHHHHHHGG---GSCC-HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcC---CCCC-HHHHHHHHHHhCcCHHHhhHhcccchhhhhc
Confidence 4789999999999999 9999 9999999999999999999999999998764
No 57
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.38 E-value=5.1e-13 Score=101.48 Aligned_cols=60 Identities=22% Similarity=0.376 Sum_probs=53.5
Q ss_pred hhccCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCCC
Q 024428 168 MKKRKKGKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWKP 231 (268)
Q Consensus 168 ~k~rkr~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~kp 231 (268)
..+|+|..|+..+..+|+.+|..+ |||+ ..++..||..+||+..||.+||+|+|.|.++-
T Consensus 27 ~~rr~Rt~ft~~Ql~~Le~~F~~~---~yp~-~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 86 (88)
T 2r5y_A 27 ETKRQRTSYTRYQTLELEKEFHFN---RYLT-RRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 86 (88)
T ss_dssp ----CCCCCCHHHHHHHHHHHTTC---SSCC-HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcc---CCCC-HHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhh
Confidence 357888999999999999999888 9999 99999999999999999999999999998764
No 58
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.37 E-value=1.1e-12 Score=96.31 Aligned_cols=62 Identities=24% Similarity=0.404 Sum_probs=56.9
Q ss_pred hccCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCCCCcc
Q 024428 169 KKRKKGKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWKPSED 234 (268)
Q Consensus 169 k~rkr~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~kp~~~ 234 (268)
.++.|..|+..+..+|+.+|..+ |||+ ..++..||..+||+..||.+||+|+|.|.++....
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~---~yp~-~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~ 67 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKN---QFPH-DSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKSN 67 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHC---SSCC-HHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTCS
T ss_pred CCCCCcCCCHHHHHHHHHHHHHc---CCCC-HHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCcC
Confidence 35778899999999999999998 9999 99999999999999999999999999998875543
No 59
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.36 E-value=1.2e-12 Score=101.12 Aligned_cols=61 Identities=23% Similarity=0.273 Sum_probs=55.6
Q ss_pred hccCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCCCCc
Q 024428 169 KKRKKGKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWKPSE 233 (268)
Q Consensus 169 k~rkr~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~kp~~ 233 (268)
.+|+|..|+..+..+|+.+|..+ |||+ ..++..||..+||+..||.+||+|+|.|.++...
T Consensus 25 ~~r~Rt~ft~~Ql~~Le~~F~~~---~yp~-~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~l 85 (96)
T 3nar_A 25 STGKICKKTPEQLHMLKSAFVRT---QWPS-PEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNL 85 (96)
T ss_dssp --CCSSSSCHHHHHHHHHHHHHC---SSCC-HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCCCccCCHHHHHHHHHHHHHc---CCCC-HHHHHHHHHHhCCCHHHeeecchhhhhHhhhhcc
Confidence 45788899999999999999988 9999 9999999999999999999999999999987653
No 60
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.34 E-value=8.5e-13 Score=102.06 Aligned_cols=59 Identities=19% Similarity=0.338 Sum_probs=53.2
Q ss_pred hccCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCCC
Q 024428 169 KKRKKGKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWKP 231 (268)
Q Consensus 169 k~rkr~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~kp 231 (268)
.+|+|..|+..+..+|+.+|..+ +||+ ..++..||..+||+..||.+||+|+|.|.++-
T Consensus 34 ~rr~Rt~ft~~Ql~~Le~~F~~~---~yp~-~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 92 (97)
T 1b72_A 34 PSGLRTNFTTRQLTELEKEFHFN---KYLS-RARRVEIAATLELNETQVKIWFQNRRMKQKKR 92 (97)
T ss_dssp ---CCCCCCHHHHHHHHHHHTTC---SSCC-HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcCcCHHHHHHHHHHHhcc---CCCC-HHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHH
Confidence 57788899999999999999888 9999 99999999999999999999999999998753
No 61
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.32 E-value=2.6e-12 Score=92.39 Aligned_cols=55 Identities=16% Similarity=0.251 Sum_probs=50.8
Q ss_pred CCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCC
Q 024428 172 KKGKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWK 230 (268)
Q Consensus 172 kr~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~k 230 (268)
.+.++.+++...|+.+|..+ +||+ ..++..||..+||+..||.+||+|+|.|.++
T Consensus 6 ~~~~p~~~Ql~~Le~~F~~~---~yp~-~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 6 SGQPPLKNLLSLLKAYYALN---AQPS-AEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp SCCCCCHHHHHHHHHHHTTC---SSCC-HHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CCCCccHHHHHHHHHHHhcC---CCcC-HHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 45667799999999999887 9999 9999999999999999999999999999875
No 62
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.32 E-value=1.9e-12 Score=97.14 Aligned_cols=61 Identities=15% Similarity=0.278 Sum_probs=54.3
Q ss_pred hccCCCCCCHHHHHHHHHHHHhccC--CCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCCC
Q 024428 169 KKRKKGKLPKEARQQLLDWWSKHYK--WPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWKP 231 (268)
Q Consensus 169 k~rkr~~lpk~~~~~L~~w~~~h~~--~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~kp 231 (268)
++|+|..|+.++...|+ -|..++. +|||+ ..++..||..+||+..||.+||+|+|.+.++.
T Consensus 17 ~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~-~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~s 79 (80)
T 1wh7_A 17 TKRFRTKFTAEQKEKML-AFAERLGWRIQKHD-DVAVEQFCAETGVRRQVLKIWMHNNKNSGPSS 79 (80)
T ss_dssp SSCCCCCCCHHHHHHHH-HHHHHHTSCCCSST-THHHHHHHHHSCCCHHHHHHHHHTTSCCSCCC
T ss_pred CCCCCccCCHHHHHHHH-HHHHHcCcCCCCCC-HHHHHHHHHHhCcCcCcccccccccccCCCCC
Confidence 57788899999999999 5777322 59999 99999999999999999999999999998764
No 63
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=2.5e-12 Score=98.12 Aligned_cols=57 Identities=23% Similarity=0.325 Sum_probs=52.1
Q ss_pred CCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCCCC
Q 024428 172 KKGKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWKPS 232 (268)
Q Consensus 172 kr~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~kp~ 232 (268)
++.+++.++..+|+.+|..+ |||+ ..++..||..+||+..||.+||+|+|.|.++-.
T Consensus 16 k~k~~t~~Ql~~Le~~F~~~---~yp~-~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~ 72 (89)
T 2dmp_A 16 KFKEKTQGQVKILEDSFLKS---SFPT-QAELDRLRVETKLSRREIDSWFSERRKLRDSME 72 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHHC---SSCC-HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSC
T ss_pred ccccCCHHHHHHHHHHHccC---CCCC-HHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHh
Confidence 34458999999999999998 9999 999999999999999999999999999987644
No 64
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.29 E-value=4e-12 Score=105.35 Aligned_cols=59 Identities=24% Similarity=0.518 Sum_probs=53.9
Q ss_pred hhccCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCC
Q 024428 168 MKKRKKGKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWK 230 (268)
Q Consensus 168 ~k~rkr~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~k 230 (268)
.++|+|..|+..+...|+.+|..+ |||+ ..++..||..+||+..||.+||+|+|.|.++
T Consensus 86 ~~rr~Rt~ft~~Q~~~Le~~F~~~---~yp~-~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr 144 (146)
T 1au7_A 86 RKRKRRTTISIAAKDALERHFGEH---SKPS-SQEIMRMAEELNLEKEVVRVWFCNRRQREKR 144 (146)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHC---SSCC-HHHHHHHHHHHTCCHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCcCccHHHHHHHHHHHHHc---CCCC-HHHHHHHHHHhCCChhhchhhhHhhhhhhhc
Confidence 356778899999999999999998 9999 9999999999999999999999999999876
No 65
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.29 E-value=3.7e-12 Score=107.04 Aligned_cols=59 Identities=19% Similarity=0.403 Sum_probs=53.9
Q ss_pred hccCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCCC
Q 024428 169 KKRKKGKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWKP 231 (268)
Q Consensus 169 k~rkr~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~kp 231 (268)
++|+|..|+..+...|+.+|..+ |||+ ..++..||..+||+..||.+||+|+|.|.+|.
T Consensus 101 ~rr~Rt~ft~~Q~~~Le~~F~~~---~yp~-~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 101 RRKKRTSIETNIRVALEKSFMEN---QKPT-SEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHC---SSCC-HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCcCccccCHHHHHHHHHHHhhc---CCCC-HHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 57788899999999999999998 9999 99999999999999999999999999998874
No 66
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.26 E-value=3.8e-12 Score=93.50 Aligned_cols=58 Identities=19% Similarity=0.325 Sum_probs=52.4
Q ss_pred cCCCCCCHHHHHHHHHHH-HhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCCCC
Q 024428 171 RKKGKLPKEARQQLLDWW-SKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWKPS 232 (268)
Q Consensus 171 rkr~~lpk~~~~~L~~w~-~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~kp~ 232 (268)
+++..++.++..+|+..| ..+ +||+ ..++..||..+||+..||.+||+|+|.+.++..
T Consensus 10 k~r~r~~~~ql~~LE~~F~~~~---~yp~-~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~~ 68 (72)
T 2cqx_A 10 KDSPVNKVEPNDTLEKVFVSVT---KYPD-EKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPSG 68 (72)
T ss_dssp CCCCCSCSCSTTHHHHHHHHTC---SSCC-HHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCHHHHHHHHHHHHhcC---CCcC-HHHHHHHHHHhCCChhhcchhhhhcccCCCCCC
Confidence 455667888999999999 777 9999 999999999999999999999999999987654
No 67
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.26 E-value=5.7e-12 Score=106.41 Aligned_cols=62 Identities=24% Similarity=0.434 Sum_probs=51.5
Q ss_pred hhccCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCCCCc
Q 024428 168 MKKRKKGKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWKPSE 233 (268)
Q Consensus 168 ~k~rkr~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~kp~~ 233 (268)
.++|+|..|+..+...|+.+|..+ |||+ ..++..||..+||+..||.+||+|+|.|.++...
T Consensus 98 ~~rr~Rt~ft~~Ql~~LE~~F~~~---~yp~-~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 159 (164)
T 2xsd_C 98 RKRKKRTSIEVGVKGALESHFLKC---PKPS-AHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTP 159 (164)
T ss_dssp --------CCHHHHHHHHHHHHHC---SSCC-HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC
T ss_pred cCCCCceeccHHHHHHHHHHHhcC---CCCC-HHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccC
Confidence 356788899999999999999998 9999 9999999999999999999999999999987554
No 68
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.26 E-value=1.1e-11 Score=90.05 Aligned_cols=62 Identities=23% Similarity=0.259 Sum_probs=57.2
Q ss_pred hhccCCCCCCHHHHHHHHHHHHh-ccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCCCCc
Q 024428 168 MKKRKKGKLPKEARQQLLDWWSK-HYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWKPSE 233 (268)
Q Consensus 168 ~k~rkr~~lpk~~~~~L~~w~~~-h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~kp~~ 233 (268)
.++|.|..|+.++..+|+..|.. + |||+ .+.+..||.+|||+..+|..||+|+|--.+.+..
T Consensus 6 ~~kR~RT~~s~eQL~~Lqs~f~~~~---~yPd-~~~r~~La~~tGL~~~~IqVWFQNrR~~~~~~~~ 68 (71)
T 1wi3_A 6 SGPRSRTKISLEALGILQSFIHDVG---LYPD-QEAIHTLSAQLDLPKHTIIKFFQNQRYHVKHSGP 68 (71)
T ss_dssp CCCCCCCCCCSHHHHHHHHHHHHHC---SCCC-HHHHHHHHHHSCCCHHHHHHHHHHHHHHCCSSCS
T ss_pred CCCCCCccCCHHHHHHHHHHHHhcC---CCCC-HHHHHHHHHHhCCCHHHHHHhhccceeeecCCCC
Confidence 36888999999999999999999 8 9999 9999999999999999999999999988776543
No 69
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.26 E-value=6.5e-12 Score=97.86 Aligned_cols=63 Identities=24% Similarity=0.396 Sum_probs=52.6
Q ss_pred hhhccCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHH------------------hC---CChhhhhhhhhhhh
Q 024428 167 FMKKRKKGKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAES------------------TG---LDSKQINNWFINQR 225 (268)
Q Consensus 167 ~~k~rkr~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~------------------tg---L~~~QV~nWF~N~R 225 (268)
.+++|+|..|+..+..+|+.+|..+ |||+ ..++..||.. +| |+..||.+||+|+|
T Consensus 7 ~k~rr~Rt~ft~~Ql~~LE~~F~~~---~yP~-~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR 82 (99)
T 1lfb_A 7 KKGRRNRFKWGPASQQILFQAYERQ---KNPS-KEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRR 82 (99)
T ss_dssp ------CCCCCHHHHHHHHHHHTTC---SSCC-HHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHH
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhcC---CCCC-HHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHH
Confidence 3457788899999999999999988 9999 9999999999 88 99999999999999
Q ss_pred hhcCCCCc
Q 024428 226 KRHWKPSE 233 (268)
Q Consensus 226 ~R~~kp~~ 233 (268)
.+.++-..
T Consensus 83 ~k~k~k~~ 90 (99)
T 1lfb_A 83 KEEAFRHK 90 (99)
T ss_dssp HTTSCCC-
T ss_pred HHHHHhch
Confidence 98876543
No 70
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.25 E-value=1.1e-11 Score=90.41 Aligned_cols=55 Identities=22% Similarity=0.344 Sum_probs=50.7
Q ss_pred CCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCCCCc
Q 024428 175 KLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWKPSE 233 (268)
Q Consensus 175 ~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~kp~~ 233 (268)
.++..+...|+.+|..+ |||+ ..++..||..+||+..||.+||+|+|.|.++...
T Consensus 10 ~~t~~ql~~LE~~F~~~---~yp~-~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~ 64 (69)
T 2l9r_A 10 HMSHTQVIELERKFSHQ---KYLS-APERAHLAKNLKLTETQVKIWFQNRRYKTKRKQL 64 (69)
T ss_dssp CCCHHHHHHHHHHHHHC---SCCC-HHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSS
T ss_pred cCCHHHHHHHHHHHhcC---CCCC-HHHHHHHHHHhCCChhheeecchhhhhhhhhhhh
Confidence 46788999999999998 9999 9999999999999999999999999999887553
No 71
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=5.8e-12 Score=98.54 Aligned_cols=62 Identities=24% Similarity=0.340 Sum_probs=56.6
Q ss_pred hccCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHh---------------------CCChhhhhhhhhhhhhh
Q 024428 169 KKRKKGKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAEST---------------------GLDSKQINNWFINQRKR 227 (268)
Q Consensus 169 k~rkr~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~t---------------------gL~~~QV~nWF~N~R~R 227 (268)
++|+|..|++.+..+|+.+|..+ |||+ ..++..||..+ +|+..+|.+||+|+|+|
T Consensus 6 ~Rr~Rt~ft~~ql~~Le~~F~~~---~yPs-~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k 81 (102)
T 2da6_A 6 SGRNRFKWGPASQQILYQAYDRQ---KNPS-KEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 81 (102)
T ss_dssp SCCCCCCCCHHHHHHHHHHHTTC---SSCC-HHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHH
T ss_pred CCCCCccCCHHHHHHHHHHHcCC---CCCC-HHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHH
Confidence 57788899999999999999999 9999 99999999999 79999999999999999
Q ss_pred cCCCCcc
Q 024428 228 HWKPSED 234 (268)
Q Consensus 228 ~~kp~~~ 234 (268)
.++....
T Consensus 82 ~kr~~~~ 88 (102)
T 2da6_A 82 EAFRQKL 88 (102)
T ss_dssp HHHHHHH
T ss_pred HHHhhHh
Confidence 8765443
No 72
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.20 E-value=9e-12 Score=104.19 Aligned_cols=60 Identities=28% Similarity=0.484 Sum_probs=55.2
Q ss_pred hhccCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCCC
Q 024428 168 MKKRKKGKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWKP 231 (268)
Q Consensus 168 ~k~rkr~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~kp 231 (268)
.++|+|..|+..+...|+.+|..+ |||+ ..++..||..+||+..||.+||+|+|.|.++.
T Consensus 95 ~~rr~Rt~ft~~Q~~~Le~~F~~~---~yps-~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 95 ARKRKRTSIENRVRWSLETMFLKS---PKPS-LQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CSCCCCCCCCHHHHHHHHTTTTTC---SCCC-HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCCcccCHHHHHHHHHHHccC---CCCC-HHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 357788899999999999999877 9999 99999999999999999999999999998764
No 73
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.14 E-value=5.1e-11 Score=85.73 Aligned_cols=49 Identities=18% Similarity=0.335 Sum_probs=44.2
Q ss_pred HHHHHHHHHHH-hccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCCC
Q 024428 179 EARQQLLDWWS-KHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWKP 231 (268)
Q Consensus 179 ~~~~~L~~w~~-~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~kp 231 (268)
.+...|+..|. .+ +||+ ..++..||.++||+..||.+||+|+|.+.++.
T Consensus 10 ~~~~~LE~~F~~~~---~yp~-~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~ 59 (64)
T 1x2m_A 10 QPNAILEKVFTAIT---KHPD-EKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPS 59 (64)
T ss_dssp CHHHHHHHHHHTTC---SSCC-HHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCS
T ss_pred hHHHHHHHHHHHcC---CCcC-HHHHHHHHHHhCCCHHHHHHHHHHHHhccCCC
Confidence 36889999995 45 9999 99999999999999999999999999998754
No 74
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.08 E-value=1.1e-10 Score=102.77 Aligned_cols=56 Identities=27% Similarity=0.480 Sum_probs=52.4
Q ss_pred hccCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhC---------------------CChhhhhhhhhhhhhh
Q 024428 169 KKRKKGKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTG---------------------LDSKQINNWFINQRKR 227 (268)
Q Consensus 169 k~rkr~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tg---------------------L~~~QV~nWF~N~R~R 227 (268)
++|.|..|++.+..+|+.||..+ |||+ ..+|..||..|| ||..||.|||+|+|++
T Consensus 142 ~RR~R~~ft~~ql~~Le~~F~~~---~YP~-~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~ 217 (221)
T 2h8r_A 142 MRRNRFKWGPASQQILYQAYDRQ---KNPS-KEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 217 (221)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHC---SSCC-HHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTT
T ss_pred CCCCCcCCCHHHHHHHHHHHHcC---CCCC-HHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhh
Confidence 57778889999999999999998 9999 999999999988 8999999999999987
Q ss_pred c
Q 024428 228 H 228 (268)
Q Consensus 228 ~ 228 (268)
.
T Consensus 218 ~ 218 (221)
T 2h8r_A 218 E 218 (221)
T ss_dssp C
T ss_pred h
Confidence 4
No 75
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.05 E-value=1.3e-10 Score=108.23 Aligned_cols=56 Identities=23% Similarity=0.382 Sum_probs=52.0
Q ss_pred ccCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcC
Q 024428 170 KRKKGKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHW 229 (268)
Q Consensus 170 ~rkr~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~ 229 (268)
++.+..+.+.++..|+..|..| |||+ ..+|..||.+|||+..||++||+|+|+|.|
T Consensus 366 ~~~~~~~~~~q~~~Le~~f~~~---~yp~-~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 366 TAAAAAISPQARAFLEQVFRRK---QSLN-SKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHC---SCCC-HHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhcchHHHHHHHHHhcC---CCcC-HHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 4556679999999999999999 9999 999999999999999999999999999975
No 76
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.03 E-value=1.3e-10 Score=100.69 Aligned_cols=57 Identities=25% Similarity=0.452 Sum_probs=52.8
Q ss_pred hccCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhC---------------------CChhhhhhhhhhhhhh
Q 024428 169 KKRKKGKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTG---------------------LDSKQINNWFINQRKR 227 (268)
Q Consensus 169 k~rkr~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tg---------------------L~~~QV~nWF~N~R~R 227 (268)
++|+|..|++.+..+|+.+|..+ |||+ ..+|..||..+| |+..||.+||+|+|++
T Consensus 115 ~rr~R~~ft~~ql~~Le~~F~~~---~yp~-~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~ 190 (194)
T 1ic8_A 115 GRRNRFKWGPASQQILFQAYERQ---KNPS-KEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 190 (194)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHH---CCCC-TTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHH
T ss_pred CCCCCcccCHHHHHHHHHHHHhc---CCCC-HHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhh
Confidence 56788899999999999999999 9999 999999999999 9999999999999998
Q ss_pred cC
Q 024428 228 HW 229 (268)
Q Consensus 228 ~~ 229 (268)
.+
T Consensus 191 ~k 192 (194)
T 1ic8_A 191 EA 192 (194)
T ss_dssp CC
T ss_pred hh
Confidence 75
No 77
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=1.3e-09 Score=79.36 Aligned_cols=47 Identities=17% Similarity=0.405 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhc
Q 024428 178 KEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRH 228 (268)
Q Consensus 178 k~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~ 228 (268)
+++..+|++.|..+ |+|+ .+++..||..+||+...|..||+|+|.+.
T Consensus 14 k~ql~~Lk~yF~~n---~~Ps-~eei~~LA~~lgL~~~VVrVWFqNrRa~~ 60 (71)
T 2da7_A 14 KDHMSVLKAYYAMN---MEPN-SDELLKISIAVGLPQEFVKEWFEQRKVYQ 60 (71)
T ss_dssp THHHHHHHHHHHHC---SSCC-HHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC---CCCC-HHHHHHHHHHhCCCHHHHHHHHhhccccc
Confidence 78899999999999 9999 99999999999999999999999999754
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=97.00 E-value=0.00011 Score=46.88 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=19.2
Q ss_pred hhhhhhhhhhhhhcCCCCcchhh
Q 024428 215 KQINNWFINQRKRHWKPSEDMQF 237 (268)
Q Consensus 215 ~QV~nWF~N~R~R~~kp~~~~~~ 237 (268)
.||..||+|+|.|.+|...+...
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~~ 23 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDAR 23 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHTT
T ss_pred CCceeccHHHHHHHHHHhHHHHH
Confidence 48999999999999988776443
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.86 E-value=0.0057 Score=44.21 Aligned_cols=45 Identities=24% Similarity=0.502 Sum_probs=40.3
Q ss_pred CCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhh
Q 024428 176 LPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQ 224 (268)
Q Consensus 176 lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~ 224 (268)
.|+..+++|+++|..| .... +++-..|+.+++|+..||..||.-+
T Consensus 13 ~~p~~~e~L~~Yy~~h---k~L~-EeDl~~L~~kskms~qqvkdwFa~k 57 (70)
T 2ys9_A 13 PPPPDIQPLERYWAAH---QQLR-ETDIPQLSQASRLSTQQVLDWFDSR 57 (70)
T ss_dssp CCCCCCHHHHHHHHHT---CCCC-TTHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHh---cccc-hhhHHHHHHHhCCCHHHHHHHHHhc
Confidence 3455689999999999 8899 9999999999999999999999753
No 80
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=87.03 E-value=1.5 Score=33.61 Aligned_cols=49 Identities=14% Similarity=0.223 Sum_probs=39.3
Q ss_pred cCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhh
Q 024428 171 RKKGKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRK 226 (268)
Q Consensus 171 rkr~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~ 226 (268)
++|..++.+.+..+-.++..+ +.++ ...+|+..|++...|++|..+++.
T Consensus 3 ~~r~~~t~e~K~~iv~~~~~~---g~~~----~~~~A~~~gvs~stl~~~~~~~~~ 51 (131)
T 1hlv_A 3 PKRRQLTFREKSRIIQEVEEN---PDLR----KGEIARRFNIPPSTLSTILKNKRA 51 (131)
T ss_dssp CSSCCCCHHHHHHHHHHHHHC---TTSC----HHHHHHHHTCCHHHHHHHHHTHHH
T ss_pred CcceeCCHHHHHHHHHHHHHC---CCCc----HHHHHHHhCCCHHHHHHHHhchhh
Confidence 356789999988777777666 7777 236899999999999999887655
No 81
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=72.93 E-value=5.8 Score=26.34 Aligned_cols=47 Identities=15% Similarity=0.310 Sum_probs=31.7
Q ss_pred CCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhh
Q 024428 173 KGKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQ 224 (268)
Q Consensus 173 r~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~ 224 (268)
+++++.+.+......+... .+. ......+|+..|++..+|.+|....
T Consensus 3 r~~ys~efK~~~~~~~~~g----~s~-~~~~~~vA~~~gIs~~tl~~W~~~~ 49 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRND----NDC-KGNQRATARKYNIHRRQIQKWLQCE 49 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHC----TTT-TTCHHHHHHHTTSCHHHHHHHHTTH
T ss_pred CCcCCHHHHHHHHHHHHcC----CCc-chHHHHHHHHHCcCHHHHHHHHHHH
Confidence 4568887766555544433 231 1225689999999999999996543
No 82
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=72.78 E-value=4 Score=29.45 Aligned_cols=46 Identities=17% Similarity=0.288 Sum_probs=31.7
Q ss_pred cCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhh
Q 024428 171 RKKGKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQR 225 (268)
Q Consensus 171 rkr~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R 225 (268)
+++.+++.+.+......+. . .. + ...+|+.+|++...|.+|....+
T Consensus 18 ~~~~~ys~e~k~~~v~~~~-~---g~-s----~~~iA~~~gIs~sTl~rW~k~~~ 63 (87)
T 2elh_A 18 RPLRSLTPRDKIHAIQRIH-D---GE-S----KASVARDIGVPESTLRGWCKNED 63 (87)
T ss_dssp SCCSSCCHHHHHHHHHHHH-H---TC-C----HHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHH-C---CC-C----HHHHHHHHCcCHHHHHHHHHHHH
Confidence 4566788887655445543 3 22 2 34789999999999999985544
No 83
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=69.51 E-value=4.6 Score=32.01 Aligned_cols=50 Identities=10% Similarity=0.218 Sum_probs=39.7
Q ss_pred ccCCCCCCHHHHHHHHHHH-HhccCCCCCCcHHHHHHHHH----Hh--CCChhhhhhhhhhhhh
Q 024428 170 KRKKGKLPKEARQQLLDWW-SKHYKWPYPSQESQKLALAE----ST--GLDSKQINNWFINQRK 226 (268)
Q Consensus 170 ~rkr~~lpk~~~~~L~~w~-~~h~~~PYPs~~~ek~~La~----~t--gL~~~QV~nWF~N~R~ 226 (268)
+++|..++-+++..+..|+ ..| |-.+ ...||+ .. |++...|+.|..|+-.
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~---~~~~----q~~la~wa~~~f~~~is~stis~ilk~k~~ 62 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQ---NRSG----QQDLIEWFREKFGKDISQPSVSQILSSKYS 62 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSS---SCCC----HHHHHHHHHHHHSSCCSSSSTTHHHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhC---CCCC----HHHHHHHHHHHHCCCCcHHHHHHHHhhHHH
Confidence 5788899999999999998 567 7667 334666 77 7899999999987544
No 84
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=65.84 E-value=5.3 Score=26.73 Aligned_cols=50 Identities=16% Similarity=0.070 Sum_probs=38.4
Q ss_pred CCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCCCC
Q 024428 174 GKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWKPS 232 (268)
Q Consensus 174 ~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~kp~ 232 (268)
..+|+..+.++...|... ++. .++|...|++...|.++....|++.++-.
T Consensus 14 ~~L~~~~r~il~l~~~~g----~s~-----~eIA~~lgis~~tv~~~~~ra~~~l~~~l 63 (70)
T 2o8x_A 14 ADLTTDQREALLLTQLLG----LSY-----ADAAAVCGCPVGTIRSRVARARDALLADA 63 (70)
T ss_dssp TSSCHHHHHHHHHHHTSC----CCH-----HHHHHHHTSCHHHHHHHHHHHHHHHHC--
T ss_pred HhCCHHHHHHHHHHHHcC----CCH-----HHHHHHHCcCHHHHHHHHHHHHHHHHHHh
Confidence 348888999887765443 332 37899999999999999999999987644
No 85
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=63.54 E-value=4.3 Score=29.33 Aligned_cols=48 Identities=10% Similarity=0.169 Sum_probs=38.4
Q ss_pred CCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCCC
Q 024428 175 KLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWKP 231 (268)
Q Consensus 175 ~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~kp 231 (268)
.||...+.+|.-.|.+. +. -.++|+.+|++...|.++...+|++.++-
T Consensus 37 ~L~~~~r~vl~l~~~~g----~s-----~~eIA~~lgis~~tV~~~l~ra~~~Lr~~ 84 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRG----WS-----TAQIATDLGIAEGTVKSRLHYAVRALRLT 84 (92)
T ss_dssp TSCHHHHHHHHHHHTSC----CC-----HHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC----CC-----HHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 38888999987765544 22 34799999999999999999999998753
No 86
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=62.00 E-value=22 Score=26.08 Aligned_cols=53 Identities=17% Similarity=0.261 Sum_probs=34.4
Q ss_pred CCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhh
Q 024428 173 KGKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRK 226 (268)
Q Consensus 173 r~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~ 226 (268)
+.+++.+.+...-..+..+- .-|+++......+|...|++..+|.+|..-.+.
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~-~~~~s~g~s~~~va~~~gIs~~tl~~W~~~~~~ 56 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQ-GEYDSQWATICSIAPKIGCTPETLRVWVRQHER 56 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHTSCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHhcc-cccccccccHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 45688887654444443330 013442246678999999999999999766543
No 87
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=61.53 E-value=9.3 Score=25.78 Aligned_cols=55 Identities=11% Similarity=0.107 Sum_probs=40.6
Q ss_pred CCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCCCCcc
Q 024428 175 KLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWKPSED 234 (268)
Q Consensus 175 ~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~kp~~~ 234 (268)
.||+..+.+|...|.-.-...+. -.++|+.+|++...|.++...++++.++....
T Consensus 5 ~L~~~er~il~l~~~l~~~~g~s-----~~eIA~~lgis~~tV~~~~~ra~~kLr~~~~~ 59 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTDYT-----LEEVGKQFDVTRERIRQIEAKALRKLRHPSRS 59 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSCCC-----HHHHHHHHTCCHHHHHHHHHHHHHGGGSCCGG
T ss_pred cCCHHHHHHHHHHHccCCCCCCC-----HHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 58888898887765211001222 24799999999999999999999999876654
No 88
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=60.87 E-value=24 Score=21.04 Aligned_cols=43 Identities=14% Similarity=0.044 Sum_probs=28.8
Q ss_pred CCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhh
Q 024428 174 GKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQR 225 (268)
Q Consensus 174 ~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R 225 (268)
..++.+.+..+...+.+. + + ...+|+.+|++...|.+|....+
T Consensus 4 ~~l~~~~~~~i~~~~~~g----~-s----~~~IA~~lgis~~Tv~~~~~~~~ 46 (51)
T 1tc3_C 4 SALSDTERAQLDVMKLLN----V-S----LHEMSRKISRSRHCIRVYLKDPV 46 (51)
T ss_dssp CCCCHHHHHHHHHHHHTT----C-C----HHHHHHHHTCCHHHHHHHHHCST
T ss_pred CCCCHHHHHHHHHHHHcC----C-C----HHHHHHHHCcCHHHHHHHHhhHH
Confidence 357777664444444332 2 3 34789999999999999986543
No 89
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=59.74 E-value=8.9 Score=26.30 Aligned_cols=55 Identities=11% Similarity=-0.057 Sum_probs=40.0
Q ss_pred CCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcC-CCCc
Q 024428 174 GKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHW-KPSE 233 (268)
Q Consensus 174 ~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~-kp~~ 233 (268)
..||+..+.++...|.-.-..++.- .++|...|++...|.+|...++++.+ ....
T Consensus 9 ~~L~~~er~il~l~~~l~~~~~~s~-----~eIA~~l~is~~tV~~~~~ra~~kLr~~~~~ 64 (73)
T 1ku3_A 9 SKLSEREAMVLKMRKGLIDGREHTL-----EEVGAYFGVTRERIRQIENKALRKLKYHESR 64 (73)
T ss_dssp TTSCHHHHHHHHHHHTTTTSSCCCH-----HHHHHHHTCCHHHHHHHHHHHHHHHHHTTC-
T ss_pred HhCCHHHHHHHHHHHhcccCCCCCH-----HHHHHHHCCCHHHHHHHHHHHHHHHHhhHhh
Confidence 3588889999877664110012222 37999999999999999999999998 6544
No 90
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=59.68 E-value=10 Score=27.14 Aligned_cols=55 Identities=11% Similarity=0.068 Sum_probs=41.2
Q ss_pred CCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCCCCcc
Q 024428 175 KLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWKPSED 234 (268)
Q Consensus 175 ~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~kp~~~ 234 (268)
.||+..+.++...|.-.-..++. -..+|..+|++...|.++...++++.++....
T Consensus 18 ~L~~~er~vl~l~~~l~~~~~~s-----~~EIA~~lgis~~tV~~~~~ra~~kLr~~l~~ 72 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDGKPKT-----LEEVGQYFNVTRERIRQIEVKALRKLRHPSRS 72 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCCC-----HHHHHHHHTCCHHHHHHHHHHHHHHHBTTBSS
T ss_pred hCCHHHHHHHHHHHccCCCCCCC-----HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 48888999987766411001222 34789999999999999999999999887654
No 91
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=49.74 E-value=15 Score=28.05 Aligned_cols=47 Identities=19% Similarity=0.179 Sum_probs=37.2
Q ss_pred CCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCCC
Q 024428 175 KLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWKP 231 (268)
Q Consensus 175 ~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~kp 231 (268)
.||+..+.++. .+.. .|+. .++|+.+|++...|.++...+|++.++-
T Consensus 109 ~L~~~~r~v~~-~~~~----g~s~-----~EIA~~lgis~~tV~~~~~ra~~~Lr~~ 155 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIR----GYSY-----REIATILSKNLKSIDNTIQRIRKKSEEW 155 (164)
T ss_dssp HSCHHHHHHHH-HHTT----TCCH-----HHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHc----CCCH-----HHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 37888999998 4333 3433 4799999999999999999999998753
No 92
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=48.30 E-value=12 Score=25.88 Aligned_cols=23 Identities=39% Similarity=0.537 Sum_probs=20.2
Q ss_pred HHHHHHHhCCChhhhhhhhhhhh
Q 024428 203 KLALAESTGLDSKQINNWFINQR 225 (268)
Q Consensus 203 k~~La~~tgL~~~QV~nWF~N~R 225 (268)
...||+.+|++...|++|..+.+
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Confidence 45899999999999999998754
No 93
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=46.22 E-value=11 Score=24.33 Aligned_cols=22 Identities=23% Similarity=0.117 Sum_probs=19.4
Q ss_pred HHHHHHhCCChhhhhhhhhhhh
Q 024428 204 LALAESTGLDSKQINNWFINQR 225 (268)
Q Consensus 204 ~~La~~tgL~~~QV~nWF~N~R 225 (268)
..||+.+|++...|++|..+.+
T Consensus 18 ~~lA~~~gis~~~i~~~e~g~~ 39 (66)
T 2xi8_A 18 SELAALLEVSRQTINGIEKNKY 39 (66)
T ss_dssp HHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHCcCHHHHHHHHcCCC
Confidence 5799999999999999998754
No 94
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=46.19 E-value=14 Score=28.19 Aligned_cols=49 Identities=10% Similarity=0.135 Sum_probs=39.0
Q ss_pred CCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCCCC
Q 024428 175 KLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWKPS 232 (268)
Q Consensus 175 ~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~kp~ 232 (268)
.||+..+.++.-.+.+. ++. .++|+.+|++...|.+|...+|++.++-.
T Consensus 22 ~L~~~~r~vl~l~y~~g----~s~-----~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 70 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADD----YSL-----AEIADEFGVSRQAVYDNIKRTEKILETYE 70 (113)
T ss_dssp GSCHHHHHHHHHHHHTC----CCH-----HHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC----CCH-----HHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 38899999987765544 322 47999999999999999999999887543
No 95
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=45.89 E-value=12 Score=24.42 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=19.6
Q ss_pred HHHHHHHhCCChhhhhhhhhhhh
Q 024428 203 KLALAESTGLDSKQINNWFINQR 225 (268)
Q Consensus 203 k~~La~~tgL~~~QV~nWF~N~R 225 (268)
...||+.+|++...|++|..+.+
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~ 43 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSET 43 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCCCHHHHHHHHcCCC
Confidence 35799999999999999998743
No 96
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=44.89 E-value=42 Score=24.07 Aligned_cols=41 Identities=17% Similarity=0.157 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhh
Q 024428 180 ARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQ 224 (268)
Q Consensus 180 ~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~ 224 (268)
....+.+|..+|+..|-++ -..||...|++..+++..|.-.
T Consensus 3 ~~~~i~~~i~~~~~~~~~~----~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 3 AKELIQNIIEESYTDSQFT----LSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp HHHHHHHHHHHHTTCTTCC----HHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCC----HHHHHHHHCcCHHHHHHHHHHH
Confidence 4556778888897775566 3468889999999988888654
No 97
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=44.78 E-value=12 Score=24.67 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=20.3
Q ss_pred HHHHHHhCCChhhhhhhhhhhhh
Q 024428 204 LALAESTGLDSKQINNWFINQRK 226 (268)
Q Consensus 204 ~~La~~tgL~~~QV~nWF~N~R~ 226 (268)
..||+.+|++...|++|..+.+.
T Consensus 20 ~~lA~~~gis~~~i~~~e~g~~~ 42 (71)
T 1zug_A 20 TELATKAGVKQQSIQLIEAGVTK 42 (71)
T ss_dssp HHHHHHHTSCHHHHHHHHTTCCS
T ss_pred HHHHHHhCCCHHHHHHHHcCCCC
Confidence 57999999999999999988654
No 98
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=44.30 E-value=43 Score=23.72 Aligned_cols=49 Identities=16% Similarity=0.157 Sum_probs=38.6
Q ss_pred CCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCCCCc
Q 024428 175 KLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWKPSE 233 (268)
Q Consensus 175 ~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~kp~~ 233 (268)
.||+..+.+|.-+ .+ .+.. .++|+..|++...|.++..+.+++......
T Consensus 29 ~Lt~~e~~vl~l~-~~----g~s~-----~eIA~~l~is~~tV~~~l~r~~~kL~~~~~ 77 (91)
T 2rnj_A 29 MLTEREMEILLLI-AK----GYSN-----QEIASASHITIKTVKTHVSNILSKLEVQDR 77 (91)
T ss_dssp GCCSHHHHHHHHH-HT----TCCT-----THHHHHHTCCHHHHHHHHHHHHHHTTCCSS
T ss_pred cCCHHHHHHHHHH-Hc----CCCH-----HHHHHHHCcCHHHHHHHHHHHHHHHCCCCH
Confidence 4788888888663 33 3444 268999999999999999999999987653
No 99
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=43.71 E-value=13 Score=29.61 Aligned_cols=47 Identities=11% Similarity=0.028 Sum_probs=37.7
Q ss_pred CCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCCC
Q 024428 176 LPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWKP 231 (268)
Q Consensus 176 lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~kp 231 (268)
||+..+.++.-.+... ++. .++|+.+|++...|.++...+|++.++-
T Consensus 141 L~~~~r~vl~l~~~~g----~s~-----~EIA~~lgis~~tV~~~l~ra~~~Lr~~ 187 (194)
T 1or7_A 141 LPEDLRMAITLRELDG----LSY-----EEIAAIMDCPVGTVRSRIFRAREAIDNK 187 (194)
T ss_dssp SCHHHHHHHHHHHTTC----CCH-----HHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHHcC----CCH-----HHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 7888888887655444 333 3799999999999999999999998753
No 100
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=42.70 E-value=8.9 Score=30.36 Aligned_cols=46 Identities=22% Similarity=0.188 Sum_probs=37.2
Q ss_pred CCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCC
Q 024428 176 LPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWK 230 (268)
Q Consensus 176 lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~k 230 (268)
||+..+.++.-.+... ++. .++|+.+|++...|.++...+|++.++
T Consensus 136 L~~~~r~vl~l~~~~g----~s~-----~eIA~~lgis~~tV~~~l~ra~~~Lr~ 181 (184)
T 2q1z_A 136 LPEAQRALIERAFFGD----LTH-----RELAAETGLPLGTIKSRIRLALDRLRQ 181 (184)
T ss_dssp SCHHHHHHHHHHHHSC----CSS-----CCSTTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC----CCH-----HHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 8899999987766655 222 158999999999999999999998764
No 101
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=42.29 E-value=14 Score=30.20 Aligned_cols=48 Identities=13% Similarity=0.175 Sum_probs=38.8
Q ss_pred CCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCC
Q 024428 174 GKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWK 230 (268)
Q Consensus 174 ~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~k 230 (268)
..||+..+.+|.-.|.+. ++. .++|+.+|++...|.++...+|++.++
T Consensus 186 ~~L~~~~r~vl~l~~~~g----~s~-----~EIA~~lgis~~~V~~~~~ra~~~Lr~ 233 (239)
T 1rp3_A 186 SKLPEREKLVIQLIFYEE----LPA-----KEVAKILETSVSRVSQLKAKALERLRE 233 (239)
T ss_dssp TTSCHHHHHHHHHHHTSC----CCH-----HHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHhcC----CCH-----HHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 348999999997766443 333 479999999999999999999999864
No 102
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=42.23 E-value=38 Score=24.43 Aligned_cols=49 Identities=16% Similarity=0.097 Sum_probs=39.2
Q ss_pred CCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCCCCc
Q 024428 175 KLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWKPSE 233 (268)
Q Consensus 175 ~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~kp~~ 233 (268)
.||+..+++|.-. .+ .+.. .++|+.+|++...|.++..+.+++......
T Consensus 27 ~Lt~~e~~vl~l~-~~----g~s~-----~eIA~~l~is~~tV~~~l~r~~~kL~~~~~ 75 (95)
T 3c57_A 27 GLTDQERTLLGLL-SE----GLTN-----KQIADRMFLAEKTVKNYVSRLLAKLGMERR 75 (95)
T ss_dssp CCCHHHHHHHHHH-HT----TCCH-----HHHHHHHTCCHHHHHHHHHHHHHHHTCCCC
T ss_pred cCCHHHHHHHHHH-Hc----CCCH-----HHHHHHHCcCHHHHHHHHHHHHHHHcCCCH
Confidence 5888899998775 32 2322 479999999999999999999999987654
No 103
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=41.37 E-value=15 Score=24.55 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=19.7
Q ss_pred HHHHHHHhCCChhhhhhhhhhhh
Q 024428 203 KLALAESTGLDSKQINNWFINQR 225 (268)
Q Consensus 203 k~~La~~tgL~~~QV~nWF~N~R 225 (268)
...||+.+|++...|++|..+.+
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~ 43 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWERSET 43 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 34799999999999999988743
No 104
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=41.04 E-value=15 Score=24.52 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=19.9
Q ss_pred HHHHHHHhCCChhhhhhhhhhhh
Q 024428 203 KLALAESTGLDSKQINNWFINQR 225 (268)
Q Consensus 203 k~~La~~tgL~~~QV~nWF~N~R 225 (268)
...||+.+|++...|++|..+.+
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~~ 48 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNKS 48 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 35799999999999999998754
No 105
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=40.34 E-value=16 Score=24.53 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=19.8
Q ss_pred HHHHHHHhCCChhhhhhhhhhhh
Q 024428 203 KLALAESTGLDSKQINNWFINQR 225 (268)
Q Consensus 203 k~~La~~tgL~~~QV~nWF~N~R 225 (268)
...||+.+|++...|+.|..+.+
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (77)
T 2b5a_A 26 QEELADLAGLHRTYISEVERGDR 48 (77)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCCCHHHHHHHHCCCC
Confidence 35799999999999999998754
No 106
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=40.28 E-value=16 Score=23.89 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=20.5
Q ss_pred HHHHHHHhCCChhhhhhhhhhhhh
Q 024428 203 KLALAESTGLDSKQINNWFINQRK 226 (268)
Q Consensus 203 k~~La~~tgL~~~QV~nWF~N~R~ 226 (268)
...||+.+|++...|++|..+.+.
T Consensus 17 q~~lA~~~gis~~~i~~~e~g~~~ 40 (69)
T 1r69_A 17 QAELAQKVGTTQQSIEQLENGKTK 40 (69)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 357999999999999999887654
No 107
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=39.42 E-value=33 Score=24.05 Aligned_cols=49 Identities=14% Similarity=0.116 Sum_probs=38.5
Q ss_pred CCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCCCCc
Q 024428 175 KLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWKPSE 233 (268)
Q Consensus 175 ~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~kp~~ 233 (268)
.||+..+++|.-+ . . .+. -.++|+..|++...|.++..+.+++......
T Consensus 21 ~Lt~~e~~vl~l~-~-~---g~s-----~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~ 69 (82)
T 1je8_A 21 QLTPRERDILKLI-A-Q---GLP-----NKMIARRLDITESTVKVHVKHMLKKMKLKSR 69 (82)
T ss_dssp GSCHHHHHHHHHH-T-T---TCC-----HHHHHHHHTSCHHHHHHHHHHHHHHTTCSSH
T ss_pred cCCHHHHHHHHHH-H-c---CCC-----HHHHHHHHCcCHHHHHHHHHHHHHHHcCCCH
Confidence 4888888888764 2 2 232 3479999999999999999999999877654
No 108
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=39.35 E-value=42 Score=22.27 Aligned_cols=52 Identities=15% Similarity=0.090 Sum_probs=40.1
Q ss_pred CCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCCCCc
Q 024428 172 KKGKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWKPSE 233 (268)
Q Consensus 172 kr~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~kp~~ 233 (268)
.-..||+..+.+|..+ . . .+ + -.++|+..|++...|..++...+++......
T Consensus 8 ~~~~L~~~e~~il~~~-~-~---g~-s----~~eIA~~l~is~~tV~~~~~~~~~kl~~~~~ 59 (74)
T 1fse_A 8 SKPLLTKREREVFELL-V-Q---DK-T----TKEIASELFISEKTVRNHISNAMQKLGVKGR 59 (74)
T ss_dssp CCCCCCHHHHHHHHHH-T-T---TC-C----HHHHHHHHTSCHHHHHHHHHHHHHHHTCSSH
T ss_pred CCCCCCHHHHHHHHHH-H-c---CC-C----HHHHHHHHCCCHHHHHHHHHHHHHHHCCCCH
Confidence 3456889899988664 2 2 33 3 2479999999999999999999999876553
No 109
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=38.59 E-value=17 Score=24.39 Aligned_cols=21 Identities=24% Similarity=0.501 Sum_probs=19.1
Q ss_pred HHHHHHhCCChhhhhhhhhhh
Q 024428 204 LALAESTGLDSKQINNWFINQ 224 (268)
Q Consensus 204 ~~La~~tgL~~~QV~nWF~N~ 224 (268)
.+||+.+|++...|+.|..+.
T Consensus 25 ~~lA~~~gis~~~is~~e~g~ 45 (73)
T 3omt_A 25 LWLTETLDKNKTTVSKWCTND 45 (73)
T ss_dssp HHHHHHTTCCHHHHHHHHTTS
T ss_pred HHHHHHHCcCHHHHHHHHcCC
Confidence 479999999999999999876
No 110
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=38.41 E-value=22 Score=24.53 Aligned_cols=38 Identities=16% Similarity=0.126 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhh
Q 024428 180 ARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQR 225 (268)
Q Consensus 180 ~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R 225 (268)
....|+.....+ . -| ...||+.+|++...|++|..+.+
T Consensus 13 ~~~~l~~~r~~~---g-ls----q~~lA~~~gis~~~i~~~e~g~~ 50 (88)
T 2wiu_B 13 LANAMKLVRQQN---G-WT----QSELAKKIGIKQATISNFENNPD 50 (88)
T ss_dssp HHHHHHHHHHHT---T-CC----HHHHHHHHTCCHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHc---C-CC----HHHHHHHhCCCHHHHHHHHcCCC
Confidence 345555554444 2 23 35799999999999999998743
No 111
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=38.37 E-value=17 Score=27.58 Aligned_cols=49 Identities=10% Similarity=0.102 Sum_probs=38.9
Q ss_pred CCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCCCC
Q 024428 175 KLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWKPS 232 (268)
Q Consensus 175 ~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~kp~ 232 (268)
.||+..+.++.-.+... ++. .++|+.+|++...|.++...+|++.++-.
T Consensus 25 ~L~~~~r~vl~l~~~~g----~s~-----~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 73 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLED----YSL-----SEIADTFNVSRQAVYDNIRRTGDLVEDYE 73 (113)
T ss_dssp GSCHHHHHHHHHHHTSC----CCH-----HHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC----CCH-----HHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 38888999887765544 332 47999999999999999999999987543
No 112
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=37.91 E-value=18 Score=24.34 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=19.7
Q ss_pred HHHHHHhCCChhhhhhhhhhhh
Q 024428 204 LALAESTGLDSKQINNWFINQR 225 (268)
Q Consensus 204 ~~La~~tgL~~~QV~nWF~N~R 225 (268)
..||+.+|++...|+.|..+.+
T Consensus 24 ~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 24 NRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHCcCHHHHHHHHcCCC
Confidence 5799999999999999998765
No 113
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=37.11 E-value=20 Score=24.95 Aligned_cols=23 Identities=13% Similarity=0.265 Sum_probs=20.2
Q ss_pred HHHHHHHhCCChhhhhhhhhhhh
Q 024428 203 KLALAESTGLDSKQINNWFINQR 225 (268)
Q Consensus 203 k~~La~~tgL~~~QV~nWF~N~R 225 (268)
...||+.+|++...|++|..+.+
T Consensus 34 q~elA~~~gis~~~is~~e~g~~ 56 (83)
T 2a6c_A 34 QFKAAELLGVTQPRVSDLMRGKI 56 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCG
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 35799999999999999998765
No 114
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=37.08 E-value=19 Score=23.80 Aligned_cols=22 Identities=27% Similarity=0.196 Sum_probs=19.2
Q ss_pred HHHHHHHhCCChhhhhhhhhhh
Q 024428 203 KLALAESTGLDSKQINNWFINQ 224 (268)
Q Consensus 203 k~~La~~tgL~~~QV~nWF~N~ 224 (268)
...||+.+|++...|++|..+.
T Consensus 29 ~~~lA~~~gis~~~i~~~e~g~ 50 (74)
T 1y7y_A 29 QETLAFLSGLDRSYVGGVERGQ 50 (74)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHHCcCHHHHHHHHCCC
Confidence 3479999999999999998775
No 115
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=36.60 E-value=19 Score=24.71 Aligned_cols=22 Identities=14% Similarity=0.291 Sum_probs=19.4
Q ss_pred HHHHHHhCCChhhhhhhhhhhh
Q 024428 204 LALAESTGLDSKQINNWFINQR 225 (268)
Q Consensus 204 ~~La~~tgL~~~QV~nWF~N~R 225 (268)
..||+.+|++...|++|..+.+
T Consensus 29 ~~lA~~~gvs~~~is~~e~g~~ 50 (80)
T 3kz3_A 29 ESVADKMGMGQSAVAALFNGIN 50 (80)
T ss_dssp HHHHHHTTSCHHHHHHHHTTSS
T ss_pred HHHHHHhCcCHHHHHHHHcCCC
Confidence 4799999999999999997754
No 116
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=36.48 E-value=34 Score=23.15 Aligned_cols=49 Identities=16% Similarity=0.111 Sum_probs=38.1
Q ss_pred CCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCCCCcc
Q 024428 176 LPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWKPSED 234 (268)
Q Consensus 176 lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~kp~~~ 234 (268)
||+..+.+|.-+ . . .+.. .++|...|++...|.++....+++.+.....
T Consensus 17 L~~~e~~vl~l~-~-~---g~s~-----~eIA~~l~is~~tV~~~~~r~~~kl~~~~~~ 65 (79)
T 1x3u_A 17 LSERERQVLSAV-V-A---GLPN-----KSIAYDLDISPRTVEVHRANVMAKMKAKSLP 65 (79)
T ss_dssp HCHHHHHHHHHH-T-T---TCCH-----HHHHHHTTSCHHHHHHHHHHHHHHTTCCSHH
T ss_pred CCHHHHHHHHHH-H-c---CCCH-----HHHHHHHCcCHHHHHHHHHHHHHHHcCCCHH
Confidence 677788888663 2 2 3333 3799999999999999999999999876644
No 117
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=34.31 E-value=58 Score=23.99 Aligned_cols=51 Identities=10% Similarity=0.033 Sum_probs=40.0
Q ss_pred CCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCCCC
Q 024428 172 KKGKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWKPS 232 (268)
Q Consensus 172 kr~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~kp~ 232 (268)
....||+..+++|.-+ .+. +.. .++|+..|++...|.++..+.+++..-..
T Consensus 31 ~~~~Lt~re~~Vl~l~-~~G----~s~-----~EIA~~L~iS~~TV~~~l~ri~~KLgv~~ 81 (99)
T 1p4w_A 31 GDKRLSPKESEVLRLF-AEG----FLV-----TEIAKKLNRSIKTISSQKKSAMMKLGVDN 81 (99)
T ss_dssp SSSSCCHHHHHHHHHH-HHT----CCH-----HHHHHHHTSCHHHHHHHHHHHHHHHTCSS
T ss_pred ccCCCCHHHHHHHHHH-HcC----CCH-----HHHHHHHCcCHHHHHHHHHHHHHHHCCCC
Confidence 3567999999999654 333 222 57999999999999999999999987554
No 118
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=33.66 E-value=23 Score=25.06 Aligned_cols=38 Identities=5% Similarity=0.030 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhh
Q 024428 180 ARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQR 225 (268)
Q Consensus 180 ~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R 225 (268)
....|+.+...+ . -| ...||+.+|++...|++|..+.+
T Consensus 9 ~g~~l~~~r~~~---g-lt----q~~lA~~~gis~~~is~~e~g~~ 46 (94)
T 2ict_A 9 PGDIIQESLDEL---N-VS----LREFARAMEIAPSTASRLLTGKA 46 (94)
T ss_dssp HHHHHHHHHHHH---T-CC----HHHHHHHHTCCHHHHHHHHHTSS
T ss_pred hhHHHHHHHHHc---C-CC----HHHHHHHhCCCHHHHHHHHcCCC
Confidence 344555555544 1 23 35799999999999999998753
No 119
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=33.58 E-value=22 Score=25.23 Aligned_cols=22 Identities=27% Similarity=0.566 Sum_probs=19.3
Q ss_pred HHHHHHhCCChhhhhhhhhhhh
Q 024428 204 LALAESTGLDSKQINNWFINQR 225 (268)
Q Consensus 204 ~~La~~tgL~~~QV~nWF~N~R 225 (268)
..||+.+|++...|+.|..+.+
T Consensus 26 ~~lA~~~gis~~~is~~e~G~~ 47 (94)
T 2kpj_A 26 LEIAKSIGVSPQTFNTWCKGIA 47 (94)
T ss_dssp HHHHHHHTCCHHHHHHHHTTSC
T ss_pred HHHHHHHCcCHHHHHHHHhCCC
Confidence 5699999999999999998753
No 120
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=33.38 E-value=38 Score=21.76 Aligned_cols=29 Identities=10% Similarity=0.122 Sum_probs=26.2
Q ss_pred HHHHHhCCChhhhhhhhhhhhhhcCCCCc
Q 024428 205 ALAESTGLDSKQINNWFINQRKRHWKPSE 233 (268)
Q Consensus 205 ~La~~tgL~~~QV~nWF~N~R~R~~kp~~ 233 (268)
++|...|++...|.++..+.+++......
T Consensus 18 eIA~~l~is~~tV~~~~~~~~~kl~~~~~ 46 (61)
T 2jpc_A 18 GISEKLHISIKTVETHRMNMMRKLQVHKV 46 (61)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHTCSSH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHCCCCH
Confidence 78999999999999999999999877654
No 121
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=32.84 E-value=22 Score=24.12 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=19.3
Q ss_pred HHHHHHhCCChhhhhhhhhhhh
Q 024428 204 LALAESTGLDSKQINNWFINQR 225 (268)
Q Consensus 204 ~~La~~tgL~~~QV~nWF~N~R 225 (268)
..||+.+|++...|+.|..+.+
T Consensus 19 ~~lA~~~gis~~~i~~~e~g~~ 40 (77)
T 2k9q_A 19 KSVAEEMGISRQQLCNIEQSET 40 (77)
T ss_dssp HHHHHHHTSCHHHHHHHHTCCS
T ss_pred HHHHHHhCCCHHHHHHHHcCCC
Confidence 4699999999999999998753
No 122
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=32.48 E-value=25 Score=23.91 Aligned_cols=22 Identities=27% Similarity=0.173 Sum_probs=19.5
Q ss_pred HHHHHHhCCChhhhhhhhhhhh
Q 024428 204 LALAESTGLDSKQINNWFINQR 225 (268)
Q Consensus 204 ~~La~~tgL~~~QV~nWF~N~R 225 (268)
..||+.+|++...|+.|..+.+
T Consensus 27 ~~lA~~~gis~~~i~~~e~g~~ 48 (84)
T 2ef8_A 27 SELAIFLGLSQSDISKIESFER 48 (84)
T ss_dssp HHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHhCCCHHHHHHHHcCCC
Confidence 4799999999999999998754
No 123
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=32.33 E-value=57 Score=24.19 Aligned_cols=55 Identities=11% Similarity=0.107 Sum_probs=41.3
Q ss_pred CCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCCCCcc
Q 024428 175 KLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWKPSED 234 (268)
Q Consensus 175 ~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~kp~~~ 234 (268)
.||+..+.++.-.|...-..++ .-.++|..+|++...|.+....++++.++....
T Consensus 19 ~Lp~reR~Vi~Lry~l~~~e~~-----s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~~~~ 73 (99)
T 3t72_q 19 GLTAREAKVLRMRFGIDMNTDY-----TLEEVGKQFDVTRERIRQIEAKALRKLRHPSRS 73 (99)
T ss_pred cCCHHHHHHHHHHHhcCCCCCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 4888899988776653201122 234799999999999999999999999876654
No 124
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=32.03 E-value=78 Score=18.92 Aligned_cols=20 Identities=20% Similarity=0.275 Sum_probs=17.7
Q ss_pred HHHHHHhCCChhhhhhhhhh
Q 024428 204 LALAESTGLDSKQINNWFIN 223 (268)
Q Consensus 204 ~~La~~tgL~~~QV~nWF~N 223 (268)
..+|+.+|++...|..|+..
T Consensus 25 ~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 25 QQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp HHHHHTTSCCHHHHHHHSCT
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 47899999999999999854
No 125
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=31.31 E-value=22 Score=23.67 Aligned_cols=19 Identities=21% Similarity=0.567 Sum_probs=17.4
Q ss_pred HHHHHHHhCCChhhhhhhh
Q 024428 203 KLALAESTGLDSKQINNWF 221 (268)
Q Consensus 203 k~~La~~tgL~~~QV~nWF 221 (268)
...||+.+|++..-|+.|.
T Consensus 13 q~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 13 QRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp HHHHHHHHTCCHHHHHHCC
T ss_pred HHHHHHHhCCCHHHHHHHH
Confidence 3579999999999999998
No 126
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=30.45 E-value=1.7e+02 Score=22.48 Aligned_cols=54 Identities=11% Similarity=0.044 Sum_probs=35.1
Q ss_pred CCCCCHHHHHHHHHHHHhccCCCCCCcHHHH-HHHHHH------hCCChhhhhhhhhhhhhhcCC
Q 024428 173 KGKLPKEARQQLLDWWSKHYKWPYPSQESQK-LALAES------TGLDSKQINNWFINQRKRHWK 230 (268)
Q Consensus 173 r~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek-~~La~~------tgL~~~QV~nWF~N~R~R~~k 230 (268)
+.+++.+....+.+++.++ |--+ ..+- ..|... ..++...|.+|+...+..-.+
T Consensus 81 ~~~~~~~~~~~I~~~~~~~---~~~s-~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~~~~~~~~ 141 (159)
T 2k27_A 81 PKVATPKVVEKIGDYKRQN---PTMF-AWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKVQQPFN 141 (159)
T ss_dssp CCCCCTTHHHHHHHHHHHC---SSSC-HHHHHHHHHHHTCSCTTTSCCHHHHHHHHHHHSCCCSC
T ss_pred CCCCCHHHHHHHHHHHHHC---ccch-HHHHHHHHHHhcccccCCccCHHHHHHHHHHHhCCCcc
Confidence 4457777778888888777 6556 4432 233322 248999999999876664433
No 127
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=30.42 E-value=69 Score=27.92 Aligned_cols=72 Identities=15% Similarity=0.220 Sum_probs=44.8
Q ss_pred HHHhhhhhcchhhhhHHhhhccCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHH-HhCCChhhhhhhhhhhhhhc
Q 024428 150 GQLLRRYSGCLSSLKQEFMKKRKKGKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAE-STGLDSKQINNWFINQRKRH 228 (268)
Q Consensus 150 ~~l~~~~~~~~~~~~~~~~k~rkr~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~-~tgL~~~QV~nWF~N~R~R~ 228 (268)
.+|...+...+..++......+...+.+.+-...+..-+..+ -. . . ..+|+ ..+=|..||.+.|.|.|+|+
T Consensus 110 ~~L~~~~~~~Ie~~R~pe~~~k~s~~WTeEE~~lFleAl~kY-----GK-D-W-~~IAk~VgTKT~~QcKnfY~~~kKRl 181 (235)
T 2iw5_B 110 SALKEKLDGGIEPYRLPEVIQKCNARWTTEEQLLAVQAIRKY-----GR-D-F-QAISDVIGNKSVVQVKNFFVNYRRRF 181 (235)
T ss_dssp HHHHHHSTTTTGGGCCCCCCCCCCSSCCHHHHHHHHHHHHHH-----SS-C-H-HHHHHHHSSCCHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHhhcccccCCCCCCccCCCCCHHHHHHHHHHHHHH-----Cc-C-H-HHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence 344444444444444433345566677877777776666665 22 1 2 23333 35599999999999999986
Q ss_pred C
Q 024428 229 W 229 (268)
Q Consensus 229 ~ 229 (268)
.
T Consensus 182 n 182 (235)
T 2iw5_B 182 N 182 (235)
T ss_dssp T
T ss_pred h
Confidence 4
No 128
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=29.89 E-value=95 Score=22.30 Aligned_cols=40 Identities=23% Similarity=0.288 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhh
Q 024428 180 ARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQ 224 (268)
Q Consensus 180 ~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~ 224 (268)
....+.+|...|+..| ++ -..||...|++..+++..|...
T Consensus 3 ~i~~~~~~i~~~~~~~-~~----~~~lA~~~~~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 3 AVRQVEEYIEANWMRP-IT----IEKLTALTGISSRGIFKAFQRS 42 (108)
T ss_dssp HHHHHHHHHHHHTTSC-CC----HHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccCC-CC----HHHHHHHHCCCHHHHHHHHHHH
Confidence 3456678888887666 55 3468888999999888887754
No 129
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=29.74 E-value=25 Score=24.63 Aligned_cols=20 Identities=20% Similarity=0.217 Sum_probs=17.6
Q ss_pred HHHHHHhCCChhhhhhhhhh
Q 024428 204 LALAESTGLDSKQINNWFIN 223 (268)
Q Consensus 204 ~~La~~tgL~~~QV~nWF~N 223 (268)
..||+.+|++..-|++|..+
T Consensus 26 ~~LA~~~Gvs~stls~~~~~ 45 (74)
T 1neq_A 26 SALSRQFGYAPTTLANALER 45 (74)
T ss_dssp HHHHHHHSSCHHHHHHTTTS
T ss_pred HHHHHHHCcCHHHHHHHHcC
Confidence 46999999999999999663
No 130
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=29.16 E-value=29 Score=23.69 Aligned_cols=22 Identities=18% Similarity=0.077 Sum_probs=19.5
Q ss_pred HHHHHHhCCChhhhhhhhhhhh
Q 024428 204 LALAESTGLDSKQINNWFINQR 225 (268)
Q Consensus 204 ~~La~~tgL~~~QV~nWF~N~R 225 (268)
.+||+.+|++...|+.|-.+.+
T Consensus 31 ~elA~~~gis~~~is~~e~g~~ 52 (83)
T 3f6w_A 31 KELAARLGRPQSFVSKTENAER 52 (83)
T ss_dssp HHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHCcCHHHHHHHHCCCC
Confidence 4799999999999999998754
No 131
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=29.16 E-value=30 Score=24.16 Aligned_cols=21 Identities=14% Similarity=0.298 Sum_probs=19.1
Q ss_pred HHHHHHhCCChhhhhhhhhhh
Q 024428 204 LALAESTGLDSKQINNWFINQ 224 (268)
Q Consensus 204 ~~La~~tgL~~~QV~nWF~N~ 224 (268)
..||+.+|++...|+.|..+.
T Consensus 34 ~~lA~~~gis~~~is~~e~g~ 54 (92)
T 1lmb_3 34 ESVADKMGMGQSGVGALFNGI 54 (92)
T ss_dssp HHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHCcCHHHHHHHHcCC
Confidence 579999999999999999875
No 132
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=28.94 E-value=98 Score=22.48 Aligned_cols=40 Identities=15% Similarity=0.176 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhh
Q 024428 180 ARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQ 224 (268)
Q Consensus 180 ~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~ 224 (268)
....+..|..+|+..| ++ -..||+..|++..+++..|.-.
T Consensus 8 ~i~~~~~~i~~~~~~~-~~----~~~lA~~~~~S~~~l~r~fk~~ 47 (113)
T 3oio_A 8 KLTEAVSLMEANIEEP-LS----TDDIAYYVGVSRRQLERLFKQY 47 (113)
T ss_dssp HHHHHHHHHHTCSSSC-CC----HHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcCC-CC----HHHHHHHHCcCHHHHHHHHHHH
Confidence 4556678889997777 55 3468888999999888887654
No 133
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=28.10 E-value=31 Score=24.90 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=19.5
Q ss_pred HHHHHHHhCCChhhhhhhhhhh
Q 024428 203 KLALAESTGLDSKQINNWFINQ 224 (268)
Q Consensus 203 k~~La~~tgL~~~QV~nWF~N~ 224 (268)
..+||+.+|++...|+.|..+.
T Consensus 40 q~eLA~~~GiS~~tis~iE~G~ 61 (88)
T 3t76_A 40 KGELREAVGVSKSTFAKLGKNE 61 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 3579999999999999999984
No 134
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=27.89 E-value=33 Score=21.71 Aligned_cols=20 Identities=10% Similarity=0.424 Sum_probs=17.4
Q ss_pred HHHHHHhCCChhhhhhhhhh
Q 024428 204 LALAESTGLDSKQINNWFIN 223 (268)
Q Consensus 204 ~~La~~tgL~~~QV~nWF~N 223 (268)
.++|+.+|++...|.+|+..
T Consensus 35 ~eIA~~lgis~~TV~~~l~~ 54 (55)
T 2x48_A 35 QQIANALGVSERKVRRYLES 54 (55)
T ss_dssp HHHHHHHTSCHHHHHHHHTC
T ss_pred HHHHHHHCcCHHHHHHHHHh
Confidence 47899999999999999753
No 135
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=27.76 E-value=1.7e+02 Score=21.55 Aligned_cols=58 Identities=24% Similarity=0.396 Sum_probs=39.6
Q ss_pred hccCCCCCCHHHHHHHHHHHHhcc--CCCCCCcHHHH----HHHHHHhCCCh-hhhhhhhhhhhhhc
Q 024428 169 KKRKKGKLPKEARQQLLDWWSKHY--KWPYPSQESQK----LALAESTGLDS-KQINNWFINQRKRH 228 (268)
Q Consensus 169 k~rkr~~lpk~~~~~L~~w~~~h~--~~PYPs~~~ek----~~La~~tgL~~-~QV~nWF~N~R~R~ 228 (268)
++|.+.....+.-..|..|+.+.. .-| || ...- ..|+...|++. .==++|+.+-.+||
T Consensus 66 ~kr~r~~~~~~~E~~L~~Wi~~~~~~g~p-vs-~~~I~~kA~~i~~~~g~~~f~~S~gWl~~F~~Rh 130 (131)
T 1hlv_A 66 RKTNKLSPYDKLEGLLIAWFQQIRAAGLP-VK-GIILKEKALRIAEELGMDDFTASNGWLDRFRRRR 130 (131)
T ss_dssp CCCCCCCTTHHHHHHHHHHHHHHGGGTCC-CC-HHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHT
T ss_pred hcccCCCCCHHHHHHHHHHHHHHHHCCCC-CC-HHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHhc
Confidence 455556677888999999998764 344 66 5433 35666777753 33467999988886
No 136
>3bj4_A Potassium voltage-gated channel subfamily KQT member 1; coiled coil, alternative splicing, deafness, disease mutation, glycoprotein, ION transport; 2.00A {Homo sapiens}
Probab=27.53 E-value=68 Score=21.22 Aligned_cols=34 Identities=21% Similarity=0.284 Sum_probs=24.7
Q ss_pred HHHhhHHHHHHHHhhcCCCCCCCCCCCchHhHHHHHHHHHHHHH
Q 024428 41 EVVARLEEVCASAASMGSGGSSCIGQDPALDQFMEAYCEMLTKY 84 (268)
Q Consensus 41 e~~~~ld~~~~~~~~~~~~~~~~~g~dpELDqfM~~Y~~~L~ky 84 (268)
.+..|+..+-.+...+ |..||++...|.++|.+.
T Consensus 14 S~~~Rl~rVE~qV~~m----------d~KLd~l~~~~~~~l~~~ 47 (49)
T 3bj4_A 14 TIGARLNRVEDKVTQL----------DQRLALITDMLHQLLSLH 47 (49)
T ss_dssp SHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHh
Confidence 4556666665555443 678999999999999875
No 137
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=27.41 E-value=32 Score=24.31 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=19.5
Q ss_pred HHHHHHhCCChhhhhhhhhhhh
Q 024428 204 LALAESTGLDSKQINNWFINQR 225 (268)
Q Consensus 204 ~~La~~tgL~~~QV~nWF~N~R 225 (268)
..||+.+|++...|++|..+.+
T Consensus 21 ~~lA~~~gis~~~is~~e~g~~ 42 (99)
T 2l49_A 21 QQLADLTGVPYGTLSYYESGRS 42 (99)
T ss_dssp HHHHHHHCCCHHHHHHHTTTSS
T ss_pred HHHHHHHCcCHHHHHHHHcCCC
Confidence 4799999999999999998854
No 138
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=26.60 E-value=38 Score=22.16 Aligned_cols=22 Identities=9% Similarity=0.161 Sum_probs=19.2
Q ss_pred HHHHHHhC--CChhhhhhhhhhhh
Q 024428 204 LALAESTG--LDSKQINNWFINQR 225 (268)
Q Consensus 204 ~~La~~tg--L~~~QV~nWF~N~R 225 (268)
..||+.+| ++...|++|..+.+
T Consensus 25 ~~lA~~~g~~is~~~i~~~e~g~~ 48 (71)
T 2ewt_A 25 HGVEEKSQGRWKAVVVGSYERGDR 48 (71)
T ss_dssp HHHHHHTTTSSCHHHHHHHHHTCS
T ss_pred HHHHHHHCCcCCHHHHHHHHCCCC
Confidence 46999999 99999999998753
No 139
>1xc0_A Pardaxin P-4, PA4; BEND-helix-BEND-helix motif, signaling protein; NMR {Synthetic} SCOP: j.6.1.1 PDB: 2kns_A
Probab=26.55 E-value=35 Score=20.11 Aligned_cols=20 Identities=30% Similarity=0.561 Sum_probs=15.9
Q ss_pred HHHHHhhCCChHHHHHHHHh
Q 024428 13 VKAKIMAHPHYHRLLAAYAN 32 (268)
Q Consensus 13 ~K~~I~~HPlyp~Ll~a~~~ 32 (268)
+-.+|.+.|||..|+.|.-.
T Consensus 5 lipkiissplfktllsavgs 24 (33)
T 1xc0_A 5 LIPKIISSPLFKTLLSAVGS 24 (33)
T ss_dssp SHHHHTTTTTHHHHHHHHHH
T ss_pred hhhHHHccHHHHHHHHHHHH
Confidence 44689999999999987543
No 140
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=26.21 E-value=37 Score=23.74 Aligned_cols=40 Identities=10% Similarity=0.021 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhh
Q 024428 178 KEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQR 225 (268)
Q Consensus 178 k~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R 225 (268)
......|+.+...+ --| ...||+.+|++...|++|..+.+
T Consensus 12 ~~~~~~l~~~r~~~----gls----q~~lA~~~gis~~~is~~e~g~~ 51 (91)
T 1x57_A 12 LEVGKVIQQGRQSK----GLT----QKDLATKINEKPQVIADYESGRA 51 (91)
T ss_dssp CHHHHHHHHHHHTT----TCC----HHHHHHHHTSCHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHc----CCC----HHHHHHHHCcCHHHHHHHHcCCC
Confidence 33455555554444 133 34699999999999999998753
No 141
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=25.94 E-value=35 Score=23.21 Aligned_cols=21 Identities=29% Similarity=0.172 Sum_probs=18.9
Q ss_pred HHHHHHhCCChhhhhhhhhhh
Q 024428 204 LALAESTGLDSKQINNWFINQ 224 (268)
Q Consensus 204 ~~La~~tgL~~~QV~nWF~N~ 224 (268)
..||+.+|++...|+.|-.+.
T Consensus 28 ~~lA~~~gis~~~i~~~e~g~ 48 (82)
T 3s8q_A 28 EDLAYKSNLDRTYISGIERNS 48 (82)
T ss_dssp HHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHhCcCHHHHHHHHCCC
Confidence 479999999999999998776
No 142
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=25.59 E-value=36 Score=23.34 Aligned_cols=21 Identities=24% Similarity=0.215 Sum_probs=18.7
Q ss_pred HHHHHHHhCCChhhhhhhhhh
Q 024428 203 KLALAESTGLDSKQINNWFIN 223 (268)
Q Consensus 203 k~~La~~tgL~~~QV~nWF~N 223 (268)
...||+.+|++...|++|-.+
T Consensus 26 q~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 26 LSELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 347999999999999999987
No 143
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=25.52 E-value=48 Score=23.25 Aligned_cols=21 Identities=14% Similarity=0.298 Sum_probs=18.6
Q ss_pred HHHHHHHhCCChhhhhhhhhh
Q 024428 203 KLALAESTGLDSKQINNWFIN 223 (268)
Q Consensus 203 k~~La~~tgL~~~QV~nWF~N 223 (268)
...||+.+|++..-|+.|..+
T Consensus 13 ~~~lA~~lGVs~~aVs~W~~g 33 (71)
T 2hin_A 13 VEKAAVGVGVTPGAVYQWLQA 33 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhC
Confidence 458999999999999999864
No 144
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=25.15 E-value=15 Score=29.99 Aligned_cols=46 Identities=13% Similarity=0.083 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcC
Q 024428 175 KLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHW 229 (268)
Q Consensus 175 ~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~ 229 (268)
.||+..+.+|.-.|... + .-.++|+.+|++...|.+++..+|++.+
T Consensus 198 ~L~~~~r~vl~l~~~~g----~-----s~~EIA~~lgis~~tV~~~~~ra~~~Lr 243 (243)
T 1l0o_C 198 ELDERERLIVYLRYYKD----Q-----TQSEVASRLGISQVQMSRLEKKILQHIK 243 (243)
T ss_dssp -------------------------------------------------------
T ss_pred hCCHHHHHHHHHHHhcC----C-----CHHHHHHHHCcCHHHHHHHHHHHHHHcC
Confidence 47888888887654433 2 2347999999999999999999988753
No 145
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=24.49 E-value=41 Score=21.98 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=18.5
Q ss_pred HHHHHHHhCCChhhhhhhhhhh
Q 024428 203 KLALAESTGLDSKQINNWFINQ 224 (268)
Q Consensus 203 k~~La~~tgL~~~QV~nWF~N~ 224 (268)
...+|+.+|++...|+.|..+.
T Consensus 16 ~~~~A~~lgis~~~vs~~~~~~ 37 (67)
T 2pij_A 16 QSALAAALGVNQSAISQMVRAG 37 (67)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 3479999999999999999543
No 146
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=24.42 E-value=1e+02 Score=26.21 Aligned_cols=24 Identities=17% Similarity=0.351 Sum_probs=20.0
Q ss_pred cHHHHHHHHHHHHHhhhhhccCCC
Q 024428 91 PFKEAMSFLQKIESQFKSLSISSP 114 (268)
Q Consensus 91 ~~~EA~~f~~~ie~QL~~L~~~~~ 114 (268)
.+.|.+.+++++...|..+|+..|
T Consensus 100 ~Lse~l~l~kqLs~sLh~mC~~~p 123 (204)
T 2jqq_A 100 QLTEALSLGKRLSKSLHEMCGIEP 123 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSC
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCC
Confidence 457999999999999999997544
No 147
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=23.74 E-value=40 Score=23.18 Aligned_cols=21 Identities=10% Similarity=0.148 Sum_probs=19.1
Q ss_pred HHHHHhCCChhhhhhhhhhhh
Q 024428 205 ALAESTGLDSKQINNWFINQR 225 (268)
Q Consensus 205 ~La~~tgL~~~QV~nWF~N~R 225 (268)
.||+.+|++...|+.|..+.+
T Consensus 32 ~lA~~~gis~~~is~~E~g~~ 52 (86)
T 2ofy_A 32 TVAFDAGISVETLRKIETGRI 52 (86)
T ss_dssp HHHHHHTCCHHHHHHHHTTCC
T ss_pred HHHHHhCCCHHHHHHHHcCCC
Confidence 899999999999999998754
No 148
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=23.68 E-value=47 Score=23.71 Aligned_cols=46 Identities=13% Similarity=0.343 Sum_probs=29.8
Q ss_pred CCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhh
Q 024428 174 GKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRK 226 (268)
Q Consensus 174 ~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~ 226 (268)
++++.+.+......+... . ......+|+.+|++...|.+|....+.
T Consensus 4 ~~ys~e~k~~~v~~~~~~---~----g~s~~~ia~~~gIs~~tl~rW~~~~~~ 49 (97)
T 2jn6_A 4 KTYSEEFKRDAVALYENS---D----GASLQQIANDLGINRVTLKNWIIKYGS 49 (97)
T ss_dssp CCCCHHHHHHHHHHHTTG---G----GSCHHHHHHHHTSCHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHHc---C----CChHHHHHHHHCcCHHHHHHHHHHHhh
Confidence 467877765444443211 0 012458999999999999999865543
No 149
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=23.22 E-value=1e+02 Score=26.11 Aligned_cols=50 Identities=12% Similarity=0.035 Sum_probs=41.0
Q ss_pred CCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCCCCc
Q 024428 174 GKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWKPSE 233 (268)
Q Consensus 174 ~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~kp~~ 233 (268)
..||+..+.+|.-. . . .++. .++|+.+|++...|.+...+.|++.+....
T Consensus 196 ~~L~~~erevl~L~-~-~---G~s~-----~EIA~~L~iS~~TVk~~l~ra~~kL~~~~~ 245 (258)
T 3clo_A 196 NILSEREKEILRCI-R-K---GLSS-----KEIAATLYISVNTVNRHRQNILEKLSVGNS 245 (258)
T ss_dssp TSSCHHHHHHHHHH-H-T---TCCH-----HHHHHHHTCCHHHHHHHHHHHHHHTTCSSH
T ss_pred ccCCHHHHHHHHHH-H-c---CCCH-----HHHHHHHCcCHHHHHHHHHHHHHHHcCCCH
Confidence 56999999999775 3 3 3443 478999999999999999999999987653
No 150
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=22.95 E-value=1.1e+02 Score=25.20 Aligned_cols=19 Identities=16% Similarity=0.412 Sum_probs=9.4
Q ss_pred HHHHHhCCChhhhhhhhhh
Q 024428 205 ALAESTGLDSKQINNWFIN 223 (268)
Q Consensus 205 ~La~~tgL~~~QV~nWF~N 223 (268)
+||+.+|++...|++|..+
T Consensus 35 ~lA~~~gis~~~i~~~~~g 53 (236)
T 3bdn_A 35 SVADKMGMGQSGVGALFNG 53 (236)
T ss_dssp HHHHHHTSCHHHHHHHTTT
T ss_pred HHHHHHCcCHHHHHHHHcC
Confidence 3455555555555555443
No 151
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=22.15 E-value=45 Score=23.97 Aligned_cols=39 Identities=18% Similarity=0.209 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhh
Q 024428 179 EARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQR 225 (268)
Q Consensus 179 ~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R 225 (268)
.....|+.....+ . -| ...||+.+|++...|+.|..+.+
T Consensus 18 ~~g~~l~~~r~~~---g-lt----q~~lA~~~gis~~~is~~e~g~~ 56 (104)
T 3cec_A 18 HPGEVIADILDDL---D-IN----TANFAEILGVSNQTIQEVINGQR 56 (104)
T ss_dssp CHHHHHHHHHHHH---T-CC----HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred CHHHHHHHHHHHc---C-CC----HHHHHHHHCcCHHHHHHHHcCCc
Confidence 3445555555544 2 23 35799999999999999998754
No 152
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=22.11 E-value=1.2e+02 Score=21.66 Aligned_cols=52 Identities=12% Similarity=0.077 Sum_probs=38.0
Q ss_pred cCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhhhcCCCC
Q 024428 171 RKKGKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRKRHWKPS 232 (268)
Q Consensus 171 rkr~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~R~~kp~ 232 (268)
.....||+..+++|.-.. . .+. -.++|..+|++...|.+...+.+++..-..
T Consensus 25 ~~~~~Lt~rE~~Vl~l~~--~---G~s-----~~eIA~~L~iS~~TV~~~~~~i~~Klgv~~ 76 (90)
T 3ulq_B 25 KEQDVLTPRECLILQEVE--K---GFT-----NQEIADALHLSKRSIEYSLTSIFNKLNVGS 76 (90)
T ss_dssp ----CCCHHHHHHHHHHH--T---TCC-----HHHHHHHHTCCHHHHHHHHHHHHHHTTCSS
T ss_pred ccccCCCHHHHHHHHHHH--c---CCC-----HHHHHHHHCcCHHHHHHHHHHHHHHHCCCC
Confidence 344568999999986654 3 333 347999999999999999999999886544
No 153
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=21.42 E-value=49 Score=24.14 Aligned_cols=22 Identities=9% Similarity=0.271 Sum_probs=19.4
Q ss_pred HHHHHHhCCChhhhhhhhhhhh
Q 024428 204 LALAESTGLDSKQINNWFINQR 225 (268)
Q Consensus 204 ~~La~~tgL~~~QV~nWF~N~R 225 (268)
..||+.+|++...|+.|-.+.+
T Consensus 26 ~~lA~~~gis~~~i~~~e~g~~ 47 (114)
T 3op9_A 26 HQIAELLNVQTRTVAYYMSGET 47 (114)
T ss_dssp HHHHHHHTSCHHHHHHHHHTSS
T ss_pred HHHHHHHCcCHHHHHHHHcCCC
Confidence 4699999999999999998854
No 154
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=21.32 E-value=48 Score=23.78 Aligned_cols=20 Identities=25% Similarity=0.260 Sum_probs=18.5
Q ss_pred HHHHHHhCCChhhhhhhhhh
Q 024428 204 LALAESTGLDSKQINNWFIN 223 (268)
Q Consensus 204 ~~La~~tgL~~~QV~nWF~N 223 (268)
..||+.+|++...|++|..+
T Consensus 18 ~~lA~~~gis~~~i~~~e~g 37 (111)
T 1b0n_A 18 SELAEKAGVAKSYLSSIERN 37 (111)
T ss_dssp HHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHCcCHHHHHHHHcC
Confidence 57999999999999999987
No 155
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=20.79 E-value=56 Score=22.24 Aligned_cols=22 Identities=9% Similarity=0.071 Sum_probs=20.0
Q ss_pred HHHHHHhCCChhhhhhhhhhhh
Q 024428 204 LALAESTGLDSKQINNWFINQR 225 (268)
Q Consensus 204 ~~La~~tgL~~~QV~nWF~N~R 225 (268)
..||+.+|++...|+.++.+.+
T Consensus 4 ~diA~~aGVS~sTVSrvLng~~ 25 (65)
T 1uxc_A 4 DEIARLAGVSRTTASYVINGKA 25 (65)
T ss_dssp HHHHHHHTSCHHHHHHHHHTCT
T ss_pred HHHHHHHCcCHHHHHHHHcCCC
Confidence 5799999999999999998876
No 156
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=20.37 E-value=53 Score=23.91 Aligned_cols=23 Identities=22% Similarity=0.198 Sum_probs=19.6
Q ss_pred HHHHHHHhCCChhhhhhhhhhhh
Q 024428 203 KLALAESTGLDSKQINNWFINQR 225 (268)
Q Consensus 203 k~~La~~tgL~~~QV~nWF~N~R 225 (268)
...||+.+|++...|+.|..+.+
T Consensus 27 q~~lA~~~gis~~~is~~e~g~~ 49 (113)
T 2eby_A 27 INELAELLHVHRNSVSALINNNR 49 (113)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 34799999999999999998753
No 157
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=20.28 E-value=1.3e+02 Score=22.23 Aligned_cols=46 Identities=11% Similarity=0.029 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHhCCChhhhhhhhhhhhh
Q 024428 172 KKGKLPKEARQQLLDWWSKHYKWPYPSQESQKLALAESTGLDSKQINNWFINQRK 226 (268)
Q Consensus 172 kr~~lpk~~~~~L~~w~~~h~~~PYPs~~~ek~~La~~tgL~~~QV~nWF~N~R~ 226 (268)
+...++.+.+......+... --.. .+|+.+|++...|.+|+...+.
T Consensus 3 r~~~~s~~~r~~i~~~~~~G---~s~~------~ia~~lgis~~Tv~r~~~~~~~ 48 (141)
T 1u78_A 3 RGSALSDTERAQLDVMKLLN---VSLH------EMSRKISRSRHCIRVYLKDPVS 48 (141)
T ss_dssp CSCCCCHHHHHHHHHHHHTT---CCHH------HHHHHHTCCHHHHHHHHHSGGG
T ss_pred CcccCCHHHHHHHHHHHHcC---CCHH------HHHHHHCcCHHHHHHHHHcccc
No 158
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=20.01 E-value=51 Score=24.60 Aligned_cols=22 Identities=9% Similarity=0.083 Sum_probs=19.6
Q ss_pred HHHHHHhCCChhhhhhhhhhhh
Q 024428 204 LALAESTGLDSKQINNWFINQR 225 (268)
Q Consensus 204 ~~La~~tgL~~~QV~nWF~N~R 225 (268)
..||..+|++...|++|-.+.+
T Consensus 29 ~~lA~~~gis~~~is~~E~g~~ 50 (126)
T 3ivp_A 29 EQVGAMIEIDPRYLTNIENKGQ 50 (126)
T ss_dssp HHHHHHHTCCHHHHHHHHHSCC
T ss_pred HHHHHHhCcCHHHHHHHHCCCC
Confidence 4799999999999999998863
Done!