BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024432
(268 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2J89|A Chain A, Functional And Structural Aspects Of Poplar Cytosolic And
Plastidial Type A Methionine Sulfoxide Reductases
Length = 261
Score = 393 bits (1009), Expect = e-110, Method: Compositional matrix adjust.
Identities = 191/222 (86%), Positives = 205/222 (92%), Gaps = 4/222 (1%)
Query: 48 HFPLTARPISTHYKPPM-NILNKLGFGFRPSPDPASTENSAIAQGPDDDVPAPGQQFSQF 106
+FP T +PIS +YKPPM NIL+KLGFG R SPDP ST + I QGPDDD+PAPGQQF+QF
Sbjct: 43 NFPRTLKPIS-YYKPPMANILSKLGFGTR-SPDP-STMDPTIPQGPDDDLPAPGQQFAQF 99
Query: 107 GAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSF 166
GAGCFWGVELAFQRVPGVTKTEVGY+QG LHNP+YEDV +GTTNHNEVVRVQYDPKECSF
Sbjct: 100 GAGCFWGVELAFQRVPGVTKTEVGYTQGLLHNPTYEDVXTGTTNHNEVVRVQYDPKECSF 159
Query: 167 DTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTE 226
DTL+D+ WARHDPT LNRQGNDVGTQYRSGIY+YTPEQEKAAKESLERQQK+LNRKIVTE
Sbjct: 160 DTLIDVLWARHDPTTLNRQGNDVGTQYRSGIYYYTPEQEKAAKESLERQQKLLNRKIVTE 219
Query: 227 ILPAKKFYRAEEYHQQYLAKGGRFGFKQSTEKGCNDPIRCYG 268
ILPAKKFYRAEEYHQQYLAKGGRFGF QS EKGCNDPIRCYG
Sbjct: 220 ILPAKKFYRAEEYHQQYLAKGGRFGFMQSAEKGCNDPIRCYG 261
>pdb|2GT3|A Chain A, Solution Structure And Dynamics Of The Reduced Form Of
Methionine Sulfoxide Reductase A From Escherichia Coli,
A 23 Kda Protein
Length = 212
Score = 164 bits (415), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 88/177 (49%), Positives = 109/177 (61%), Gaps = 7/177 (3%)
Query: 75 RPSPDPASTENSAIAQGPDDDVPAPGQQFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQG 134
R +P P +T + A+ +VP G + + F GCFWGVE F ++PGV T GY+ G
Sbjct: 19 RNTPMPVATLH-AVNGHSMTNVPD-GMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGG 76
Query: 135 YLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYR 194
Y NP+Y +VCSG T H E VR+ YDP S++ LL +FW HDP RQGND GTQYR
Sbjct: 77 YTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYR 136
Query: 195 SGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 246
S IY TPEQ+ AA+ SLER Q + +R I TEI A FY AE+ HQQYL K
Sbjct: 137 SAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDHQQYLHK 193
>pdb|2IEM|A Chain A, Solution Structure Of An Oxidized Form (Cys51-Cys198) Of
E. Coli Methionine Sulfoxide Reductase A (Msra)
Length = 211
Score = 161 bits (407), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 80/152 (52%), Positives = 96/152 (63%), Gaps = 5/152 (3%)
Query: 100 GQQFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQY 159
G + + F GCFWGVE F ++PGV T GY+ GY NP+Y +V SG T H E VR+ Y
Sbjct: 41 GMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVSSGDTGHAEAVRIVY 100
Query: 160 DPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL 219
DP S++ LL +FW HDP RQGND GTQYRS IY TPEQ+ AA+ SLER Q +
Sbjct: 101 DPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAM 160
Query: 220 -----NRKIVTEILPAKKFYRAEEYHQQYLAK 246
+R I TEI A FY AE+ HQQYL K
Sbjct: 161 LAADDDRHITTEIANATPFYYAEDDHQQYLHK 192
>pdb|1FF3|A Chain A, Structure Of The Peptide Methionine Sulfoxide Reductase
From Escherichia Coli
pdb|1FF3|B Chain B, Structure Of The Peptide Methionine Sulfoxide Reductase
From Escherichia Coli
pdb|1FF3|C Chain C, Structure Of The Peptide Methionine Sulfoxide Reductase
From Escherichia Coli
Length = 211
Score = 160 bits (404), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 80/152 (52%), Positives = 96/152 (63%), Gaps = 5/152 (3%)
Query: 100 GQQFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQY 159
G + + F G FWGVE F ++PGV T GY+ GY NP+Y +VCSG T H E VR+ Y
Sbjct: 41 GMEIAIFAMGXFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVY 100
Query: 160 DPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL 219
DP S++ LL +FW HDP RQGND GTQYRS IY TPEQ+ AA+ SLER Q +
Sbjct: 101 DPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAM 160
Query: 220 -----NRKIVTEILPAKKFYRAEEYHQQYLAK 246
+R I TEI A FY AE+ HQQYL K
Sbjct: 161 LAADDDRHITTEIANATPFYYAEDDHQQYLHK 192
>pdb|1FVA|A Chain A, Crystal Structure Of Bovine Methionine Sulfoxide Reductase
pdb|1FVA|B Chain B, Crystal Structure Of Bovine Methionine Sulfoxide Reductase
Length = 217
Score = 154 bits (389), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 78/151 (51%), Positives = 98/151 (64%), Gaps = 4/151 (2%)
Query: 100 GQQFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQY 159
G Q + FG GCFWG E F + GV T+VG++ GY NP+Y++VCSG T H EVVRV +
Sbjct: 50 GTQMAVFGMGCFWGAERKFWTLKGVYSTQVGFAGGYTPNPTYKEVCSGKTGHAEVVRVVF 109
Query: 160 DPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL 219
P+ SF+ LL +FW HDPT RQGND G+QYRS IY + E AA +S E QKVL
Sbjct: 110 QPEHISFEELLKVFWENHDPTQGMRQGNDHGSQYRSAIYPTSAEHVGAALKSKEDYQKVL 169
Query: 220 NRK----IVTEILPAKKFYRAEEYHQQYLAK 246
+ I T+I + FY AE+YHQQYL+K
Sbjct: 170 SEHGFGLITTDIREGQTFYYAEDYHQQYLSK 200
>pdb|2L90|A Chain A, Solution Structure Of Murine Myristoylated Msra
Length = 212
Score = 154 bits (388), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 81/176 (46%), Positives = 106/176 (60%), Gaps = 5/176 (2%)
Query: 75 RPSPDPASTENSAIAQGPDDDVPAPGQQFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQG 134
R P P + ++ + P G Q + FG GCFWG E F + GV T+VG++ G
Sbjct: 17 RTEPIPVTAKHHVSGNRTVEPFPE-GTQMAVFGMGCFWGAERKFWVLKGVYSTQVGFAGG 75
Query: 135 YLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYR 194
+ NP+Y++VCS T H EVVRV Y P+ SF+ LL +FW HDPT RQGND GTQYR
Sbjct: 76 HTRNPTYKEVCSEKTGHAEVVRVVYRPEHISFEELLKVFWENHDPTQGMRQGNDFGTQYR 135
Query: 195 SGIYFYTPEQEKAAKESLERQQKVLNRK----IVTEILPAKKFYRAEEYHQQYLAK 246
S +Y + Q +AA S E QKVL++ I T+I + FY AE+YHQQYL+K
Sbjct: 136 SAVYPTSAVQMEAALRSKEEYQKVLSKHNFGPITTDIREGQVFYYAEDYHQQYLSK 191
>pdb|1FVG|A Chain A, Crystal Structure Of Bovine Peptide Methionine Sulfoxide
Reductase
Length = 199
Score = 153 bits (387), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 78/151 (51%), Positives = 98/151 (64%), Gaps = 4/151 (2%)
Query: 100 GQQFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQY 159
G Q + FG GCFWG E F + GV T+VG++ GY NP+Y++VCSG T H EVVRV +
Sbjct: 42 GTQXAVFGXGCFWGAERKFWTLKGVYSTQVGFAGGYTPNPTYKEVCSGKTGHAEVVRVVF 101
Query: 160 DPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL 219
P+ SF+ LL +FW HDPT RQGND G+QYRS IY + E AA +S E QKVL
Sbjct: 102 QPEHISFEELLKVFWENHDPTQGXRQGNDHGSQYRSAIYPTSAEHVGAALKSKEDYQKVL 161
Query: 220 NRK----IVTEILPAKKFYRAEEYHQQYLAK 246
+ I T+I + FY AE+YHQQYL+K
Sbjct: 162 SEHGFGLITTDIREGQTFYYAEDYHQQYLSK 192
>pdb|3BQE|A Chain A, Structure Of The Central Domain (Msra) Of Neisseria
Meningitidis Pilb (Reduced Form)
Length = 194
Score = 142 bits (359), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 68/141 (48%), Positives = 85/141 (60%)
Query: 106 FGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECS 165
GCFWG+E FQR+ GV GY+ G NPSYEDV T H E V+V YD + S
Sbjct: 8 LAGGCFWGLEAYFQRIDGVVDAVSGYANGNTKNPSYEDVSYRHTGHAETVKVTYDADKLS 67
Query: 166 FDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVT 225
D +L F+ DPT LN+QGND GTQYRSG+Y+ P ++ +L+R+Q+ +V
Sbjct: 68 LDDILQYFFRVVDPTSLNKQGNDTGTQYRSGVYYTDPAEKAVIAAALKREQQKYQLPLVV 127
Query: 226 EILPAKKFYRAEEYHQQYLAK 246
E P K FY AEEYHQ YL K
Sbjct: 128 ENEPLKNFYDAEEYHQDYLIK 148
>pdb|3BQH|A Chain A, Structure Of The Central Domain (Msra) Of Neisseria
Meningitidis Pilb (Oxidized Form)
Length = 193
Score = 142 bits (358), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 68/141 (48%), Positives = 85/141 (60%)
Query: 106 FGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECS 165
GCFWG+E FQR+ GV GY+ G NPSYEDV T H E V+V YD + S
Sbjct: 7 LAGGCFWGLEAYFQRIDGVVDAVSGYANGNTKNPSYEDVSYRHTGHAETVKVTYDADKLS 66
Query: 166 FDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVT 225
D +L F+ DPT LN+QGND GTQYRSG+Y+ P ++ +L+R+Q+ +V
Sbjct: 67 LDDILQYFFRVVDPTSLNKQGNDTGTQYRSGVYYTDPAEKAVIAAALKREQQKYQLPLVV 126
Query: 226 EILPAKKFYRAEEYHQQYLAK 246
E P K FY AEEYHQ YL K
Sbjct: 127 ENEPLKNFYDAEEYHQDYLIK 147
>pdb|3BQF|A Chain A, Structure Of The Central Domain (Msra) Of Neisseria
Meningitidis Pilb (Complex With A Substrate)
Length = 194
Score = 139 bits (350), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/141 (47%), Positives = 84/141 (59%)
Query: 106 FGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECS 165
G FWG+E FQR+ GV GY+ G NPSYEDV T H E V+V YD + S
Sbjct: 8 LAGGSFWGLEAYFQRIDGVVDAVSGYANGNTKNPSYEDVSYRHTGHAETVKVTYDADKLS 67
Query: 166 FDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVT 225
D +L F+ DPT LN+QGND GTQYRSG+Y+ P ++ +L+R+Q+ +V
Sbjct: 68 LDDILQYFFRVVDPTSLNKQGNDTGTQYRSGVYYTDPAEKAVIAAALKREQQKYQLPLVV 127
Query: 226 EILPAKKFYRAEEYHQQYLAK 246
E P K FY AEEYHQ YL K
Sbjct: 128 ENEPLKNFYDAEEYHQDYLIK 148
>pdb|3BQG|A Chain A, Structure Of The Central Domain (msra) Of Neisseria
Meningitidis Pilb (sulfenic Acid Form)
Length = 194
Score = 139 bits (350), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 69/159 (43%), Positives = 91/159 (57%), Gaps = 1/159 (0%)
Query: 106 FGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECS 165
G FWG+E FQR+ GV GY+ G NPSYEDV T H E V+V YD + S
Sbjct: 8 LAGGXFWGLEAYFQRIDGVVDAVSGYANGNTKNPSYEDVSYRHTGHAETVKVTYDADKLS 67
Query: 166 FDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVT 225
D +L F+ DPT LN+QGND GTQYRSG+Y+ P ++ +L+R+Q+ +V
Sbjct: 68 LDDILQYFFRVVDPTSLNKQGNDTGTQYRSGVYYTDPAEKAVIAAALKREQQKYQLPLVV 127
Query: 226 EILPAKKFYRAEEYHQQYLAKGGRFGFKQSTEKGCNDPI 264
E P K FY AEEYHQ YL K G+ + ++P+
Sbjct: 128 ENEPLKNFYDAEEYHQDYLIKNPN-GYSHIDIRKADEPL 165
>pdb|4GWB|A Chain A, Crystal Structure Of Putative Peptide Methionine Sulfoxide
Reductase From Sinorhizobium Meliloti 1021
Length = 168
Score = 114 bits (285), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 89/143 (62%), Gaps = 6/143 (4%)
Query: 106 FGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECS 165
GCFWG + +++PGV +T VGY+ G + N +Y + GT H E + + +DP+ S
Sbjct: 7 LAGGCFWGXQDLIRKLPGVIETRVGYTGGDVPNATYRN--HGT--HAEGIEIIFDPERIS 62
Query: 166 FDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQK--VLNRKI 223
+ +L++F+ HDPT +RQGND+GT YRS IY+ EQ++ A+E++ + + K+
Sbjct: 63 YRRILELFFQIHDPTTKDRQGNDIGTSYRSAIYYVDDEQKRIAQETIADVEASGLWPGKV 122
Query: 224 VTEILPAKKFYRAEEYHQQYLAK 246
VTE+ P + F+ AE HQ YL +
Sbjct: 123 VTEVEPVRDFWEAEPEHQNYLER 145
>pdb|3E0M|A Chain A, Crystal Structure Of Fusion Protein Of Msra And Msrb
pdb|3E0M|B Chain B, Crystal Structure Of Fusion Protein Of Msra And Msrb
pdb|3E0M|C Chain C, Crystal Structure Of Fusion Protein Of Msra And Msrb
pdb|3E0M|D Chain D, Crystal Structure Of Fusion Protein Of Msra And Msrb
Length = 313
Score = 112 bits (280), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 82/141 (58%), Gaps = 2/141 (1%)
Query: 106 FGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECS 165
GCFWG+E F R+ GV +T VGY+ G + +Y+ + T+H E V+V YD KE S
Sbjct: 7 LAGGCFWGLEEYFSRISGVLETSVGYANGQVETTNYQLL--KETDHAETVQVIYDEKEVS 64
Query: 166 FDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVT 225
+L ++ DP +N+QGND G QYR+GIY+ A ++ Q+++L RKI
Sbjct: 65 LREILLYYFRVIDPLSINQQGNDRGRQYRTGIYYQDEADLPAIYTVVQEQERMLGRKIAV 124
Query: 226 EILPAKKFYRAEEYHQQYLAK 246
E+ + + AE+YHQ YL K
Sbjct: 125 EVEQLRHYILAEDYHQDYLRK 145
>pdb|1NWA|A Chain A, Structure Of Mycobacterium Tuberculosis Methionine
Sulfoxide Reductase A In Complex With Protein-Bound
Methionine
Length = 203
Score = 110 bits (275), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 86/147 (58%), Gaps = 6/147 (4%)
Query: 102 QFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDP 161
Q + GCFWG++ + PGV T VGYS G + N +Y + GT H E V + +DP
Sbjct: 26 QKAILAGGCFWGLQDLIRNQPGVVSTRVGYSGGNIPNATYRN--HGT--HAEAVEIIFDP 81
Query: 162 KECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQK--VL 219
+ TLL+ F+ HDPT +RQGND GT YRS I+++ +Q++ A +++ + +
Sbjct: 82 TVTDYRTLLEFFFQIHDPTTKDRQGNDRGTSYRSAIFYFDEQQKRIALDTIADVEASGLW 141
Query: 220 NRKIVTEILPAKKFYRAEEYHQQYLAK 246
K+VTE+ PA F+ AE HQ YL +
Sbjct: 142 PGKVVTEVSPAGDFWEAEPEHQDYLQR 168
>pdb|3PIL|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Reduced Form
pdb|3PIL|B Chain B, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Reduced Form
Length = 184
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/149 (40%), Positives = 78/149 (52%), Gaps = 8/149 (5%)
Query: 106 FGAGCFWGVELAFQRVPG--VTKTEVGYSQGYLHNP------SYEDVCSGTTNHNEVVRV 157
GCFWG E +++ + +VGY+ G SY+ VC G T+ EV++V
Sbjct: 21 LACGCFWGTEHMYRKYLNDRIVDCKVGYANGEESKKDSPSSVSYKRVCGGDTDFAEVLQV 80
Query: 158 QYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQK 217
Y+PK + L D F+ HDPT N QG D GTQYRSG++ ++ K + E Q
Sbjct: 81 SYNPKVITLRELTDFFFRIHDPTTSNSQGPDKGTQYRSGLFAHSDADLKELAKIKEEWQP 140
Query: 218 VLNRKIVTEILPAKKFYRAEEYHQQYLAK 246
KI T I P K FY AEEYHQ YL K
Sbjct: 141 KWGNKIATVIEPIKNFYDAEEYHQLYLDK 169
>pdb|3PIM|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Unusual Oxidized Form
pdb|3PIM|B Chain B, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Unusual Oxidized Form
pdb|3PIM|C Chain C, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Unusual Oxidized Form
Length = 187
Score = 105 bits (262), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/149 (40%), Positives = 78/149 (52%), Gaps = 8/149 (5%)
Query: 106 FGAGCFWGVELAFQRVPG--VTKTEVGYSQGYLHNP------SYEDVCSGTTNHNEVVRV 157
GCFWG E +++ + +VGY+ G SY+ VC G T+ EV++V
Sbjct: 24 LACGCFWGTEHMYRKYLNDRIVDCKVGYANGEESKKDSPSSVSYKRVCGGDTDFAEVLQV 83
Query: 158 QYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQK 217
Y+PK + L D F+ HDPT N QG D GTQYRSG++ ++ K + E Q
Sbjct: 84 SYNPKVITLRELTDFFFRIHDPTTSNSQGPDKGTQYRSGLFAHSDADLKELAKIKEEWQP 143
Query: 218 VLNRKIVTEILPAKKFYRAEEYHQQYLAK 246
KI T I P K FY AEEYHQ YL K
Sbjct: 144 KWGNKIATVIEPIKNFYDAEEYHQLYLDK 172
>pdb|3PIN|B Chain B, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Complex With Trx2
Length = 183
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 78/149 (52%), Gaps = 8/149 (5%)
Query: 106 FGAGCFWGVELAFQRVPG--VTKTEVGYSQGYLHNP------SYEDVCSGTTNHNEVVRV 157
+G FWG E +++ + ++VGY+ G SY+ V G T+ EV++V
Sbjct: 20 LASGSFWGTEHMYRKYLNDRIVDSKVGYANGEESKKDSPSSVSYKRVSGGDTDFAEVLQV 79
Query: 158 QYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQK 217
Y+PK + L D F+ HDPT N QG D GTQYRSG++ ++ K + E Q
Sbjct: 80 SYNPKVITLRELTDFFFRIHDPTTSNSQGPDKGTQYRSGLFAHSDADLKELAKIKEEWQP 139
Query: 218 VLNRKIVTEILPAKKFYRAEEYHQQYLAK 246
KI T I P K FY AEEYHQ YL K
Sbjct: 140 KWGNKIATVIEPIKNFYDAEEYHQLYLDK 168
>pdb|1S0U|A Chain A, Eif2gamma Apo
Length = 408
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 55 PISTHYKPPMNILNKLGFGFRPSP--DPASTENSAIAQGPDDDVPAPGQQFSQFGAGCFW 112
PIS H++ +++L K F P+P DP +T +A+ D+ PG + G
Sbjct: 176 PISAHHEANIDVLLKAIQDFIPTPKRDPDATPRMYVAR--SFDINKPGTEIKDLKGGVLG 233
Query: 113 G 113
G
Sbjct: 234 G 234
>pdb|1KWG|A Chain A, Crystal Structure Of Thermus Thermophilus A4
Beta-Galactosidase
pdb|1KWK|A Chain A, Crystal Structure Of Thermus Thermophilus A4
Beta-Galactosidase In Complex With Galactose
Length = 645
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 251 GFKQSTEKGCNDPIRCY 267
GF+ E GC+D +RCY
Sbjct: 135 GFQTDNEYGCHDTVRCY 151
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,459,904
Number of Sequences: 62578
Number of extensions: 316223
Number of successful extensions: 707
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 675
Number of HSP's gapped (non-prelim): 21
length of query: 268
length of database: 14,973,337
effective HSP length: 97
effective length of query: 171
effective length of database: 8,903,271
effective search space: 1522459341
effective search space used: 1522459341
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)