Query 024432
Match_columns 268
No_of_seqs 248 out of 1140
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 04:33:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024432.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024432hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1635 Peptide methionine sul 100.0 1.1E-81 2.3E-86 546.3 17.3 187 82-268 5-191 (191)
2 COG0225 MsrA Peptide methionin 100.0 6.3E-75 1.4E-79 503.6 18.0 155 99-254 4-160 (174)
3 PRK13014 methionine sulfoxide 100.0 4.1E-71 8.8E-76 484.9 17.3 165 98-262 5-171 (186)
4 PRK00058 methionine sulfoxide 100.0 1.7E-70 3.7E-75 489.4 21.3 164 99-268 43-210 (213)
5 PRK14054 methionine sulfoxide 100.0 5.1E-71 1.1E-75 479.0 16.9 167 100-266 2-170 (172)
6 TIGR00401 msrA methionine-S-su 100.0 3.1E-70 6.7E-75 464.5 17.1 147 102-248 1-149 (149)
7 PF01625 PMSR: Peptide methion 100.0 9.7E-69 2.1E-73 457.4 12.3 152 102-254 1-153 (155)
8 PRK05528 methionine sulfoxide 100.0 3.6E-65 7.8E-70 436.7 17.5 146 102-255 2-147 (156)
9 PRK05550 bifunctional methioni 100.0 1.6E-64 3.4E-69 466.9 19.9 158 98-256 124-281 (283)
10 PRK14018 trifunctional thiored 100.0 2.5E-63 5.5E-68 489.6 18.9 173 90-264 187-359 (521)
11 PF00403 HMA: Heavy-metal-asso 94.8 0.045 9.8E-07 38.7 3.9 47 108-173 10-56 (62)
12 COG2608 CopZ Copper chaperone 85.8 1.6 3.5E-05 32.6 4.5 47 107-172 13-59 (71)
13 PF02682 AHS1: Allophanate hyd 70.3 7 0.00015 35.0 4.4 66 112-201 28-96 (202)
14 PF08098 ATX_III: Anemonia sul 67.9 1.9 4.2E-05 27.5 0.2 9 106-114 11-19 (27)
15 COG2049 DUR1 Allophanate hydro 66.0 9.4 0.0002 35.3 4.4 40 112-172 26-67 (223)
16 COG3727 Vsr DNA G:T-mismatch r 63.8 2.6 5.7E-05 36.7 0.4 46 60-114 22-70 (150)
17 PF03852 Vsr: DNA mismatch end 63.8 2 4.3E-05 33.6 -0.3 15 99-113 54-68 (75)
18 TIGR00003 copper ion binding p 60.6 37 0.0008 20.9 5.3 47 108-173 14-60 (68)
19 PF04536 TPM: TLP18.3, Psb32 a 55.0 31 0.00066 26.8 5.0 49 200-248 2-50 (119)
20 smart00796 AHS1 Allophanate hy 50.0 33 0.00073 30.7 5.1 68 112-202 28-98 (201)
21 TIGR02712 urea_carbox urea car 45.8 67 0.0014 36.2 7.5 69 121-213 842-913 (1201)
22 COG5053 CDC33 Translation init 42.8 42 0.00091 31.0 4.5 62 166-227 132-196 (217)
23 COG2217 ZntA Cation transport 41.6 34 0.00073 36.6 4.3 46 108-173 14-60 (713)
24 PHA03303 envelope glycoprotein 40.5 11 0.00023 33.4 0.4 15 107-121 143-157 (159)
25 PF11491 DUF3213: Protein of u 28.9 34 0.00075 27.6 1.5 29 150-179 33-61 (88)
26 TIGR00370 conserved hypothetic 27.0 1E+02 0.0022 27.8 4.3 39 112-172 23-61 (202)
27 KOG4309 Transcription mediator 26.1 64 0.0014 29.6 2.9 47 152-202 139-191 (217)
28 KOG2003 TPR repeat-containing 25.5 26 0.00057 36.5 0.4 16 105-120 397-412 (840)
29 PF02617 ClpS: ATP-dependent C 24.0 94 0.002 23.6 3.1 68 157-227 10-82 (82)
30 PRK14627 hypothetical protein; 21.7 58 0.0012 26.3 1.6 17 149-165 43-59 (100)
31 PF03622 IBV_3B: IBV 3B protei 20.7 46 0.00099 25.4 0.7 16 101-116 37-52 (64)
32 TIGR00632 vsr DNA mismatch end 20.2 58 0.0012 27.3 1.3 16 98-113 53-68 (117)
No 1
>KOG1635 consensus Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-81 Score=546.28 Aligned_cols=187 Identities=74% Similarity=1.208 Sum_probs=183.7
Q ss_pred CccccccCCCCCCCCCCCCCeEEEEecCcchhhhhhhhcCCCeeEeeeeeeCCCCCCCCccccccCCCCceEEEEEEEcC
Q 024432 82 STENSAIAQGPDDDVPAPGQQFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDP 161 (268)
Q Consensus 82 ~~~~~~~~~~p~~~~~~~~~~~a~fAgGCFWgvEa~F~~l~GVv~t~vGYaGG~~~nPTYe~VcsG~TGHaEaV~V~YDp 161 (268)
+++++.+++.++.+++.++++.|+||+|||||+|++|+++|||++|+|||+||.++||||++||+|+|||+|+|+|+|||
T Consensus 5 ~~~~s~i~~~~d~d~~~~g~q~a~fg~GCFWg~E~a~~~l~gV~~T~vGYagG~~~nPtYk~vc~~tT~HaEvvrV~ydp 84 (191)
T KOG1635|consen 5 TMDPSNIAQVIDVDVPAPGLQFATFGAGCFWGVELAYQRLPGVVRTEVGYAGGITDNPTYKDVCSGTTNHAEVVRVQYDP 84 (191)
T ss_pred ccccccccCCCcCCCCCCccceeeeeccchhhHHHHHhhcCCeEEEeecccCCccCCcchhhhccCCCCcceEEEEEeCc
Confidence 45667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCCCCCCCCCCCCCCCCcceeeccCCHHHHHHHHHHHHHHHHhcCCceEEEEEeCCCcccCchhHH
Q 024432 162 KECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQ 241 (268)
Q Consensus 162 ~~ISye~LL~~F~~~hDPT~~nrQG~D~G~QYRSaIfy~deeQ~~~A~~s~~~lq~~~~~~IvTeI~p~~~Fy~AEeYHQ 241 (268)
++|||++|||+||++||||++||||+|+|+||||+||++++||+++|++++++.|++++++|+|+|+|+++||.||||||
T Consensus 85 k~~sy~~Lld~Fw~~HdPtt~n~QG~D~GtQYRS~I~~~s~eq~k~A~~s~e~~Q~k~~~kI~T~I~p~~kFY~AE~yHQ 164 (191)
T KOG1635|consen 85 KVISYEELLDFFWSRHDPTTLNRQGNDVGTQYRSGIYTYSPEQEKLARESKEREQKKWNGKIVTEILPAKKFYRAEEYHQ 164 (191)
T ss_pred ccccHHHHHHHHHHcCCchhhhccCCcccceeeeeeeeCCHHHHHHHHHHHHHHHhccCCcceEEEeeccchhhchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCccccccCCCCCcceeeC
Q 024432 242 QYLAKGGRFGFKQSTEKGCNDPIRCYG 268 (268)
Q Consensus 242 ~Yl~Knp~~g~~~s~~kg~~~~ircyg 268 (268)
+||.|||++||+||..+||+|||||||
T Consensus 165 qYl~K~~~~Gy~~s~~~~~~~pi~c~g 191 (191)
T KOG1635|consen 165 QYLSKNPRNGYAQSTHKGRKDPIRCYG 191 (191)
T ss_pred HHHhhCCCCccccccCCcccCcccccC
Confidence 999999999999999999999999998
No 2
>COG0225 MsrA Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.3e-75 Score=503.59 Aligned_cols=155 Identities=54% Similarity=0.939 Sum_probs=149.5
Q ss_pred CCCeEEEEecCcchhhhhhhhcCCCeeEeeeeeeCCCCCCCCccccccCCCCceEEEEEEEcCCCCCHHHHHHHHHhcCC
Q 024432 99 PGQQFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHD 178 (268)
Q Consensus 99 ~~~~~a~fAgGCFWgvEa~F~~l~GVv~t~vGYaGG~~~nPTYe~VcsG~TGHaEaV~V~YDp~~ISye~LL~~F~~~hD 178 (268)
.+++.|+||||||||+|+.|+++|||++|+|||+||+++||||++||+|.|||+|+|+|+|||++|||++||++||++||
T Consensus 4 ~~~~~a~fagGCFWg~E~~f~~i~GV~~t~~GYagG~~~nptY~~Vcsg~TgHaE~V~V~yDp~~isy~~LL~~ff~ihD 83 (174)
T COG0225 4 AGMEKAYFAGGCFWGVEAYFEQIPGVLSTVSGYAGGHTPNPTYEEVCSGTTGHAEAVEVTYDPKVISYEELLEVFFEIHD 83 (174)
T ss_pred CCcEEEEEeccCccchHHHHhhCCCeEEEeeeEcCCCCCCCChhhccCCCCCceEEEEEEeCCccccHHHHHHHHheecC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCcceeeccCCHHHHHHHHHHHHHHHH--hcCCceEEEEEeCCCcccCchhHHHHHHhCCCCCccc
Q 024432 179 PTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQK--VLNRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGFKQ 254 (268)
Q Consensus 179 PT~~nrQG~D~G~QYRSaIfy~deeQ~~~A~~s~~~lq~--~~~~~IvTeI~p~~~Fy~AEeYHQ~Yl~Knp~~g~~~ 254 (268)
||+.||||||+|+||||+|||+|++|+++|+++++++++ .++++|+|||+|+++||+||||||+||+|||+ |||+
T Consensus 84 PT~~nrQGnD~GtqYRs~Iy~~~~~q~~~a~~~~~~~q~~~~~~~~IvteI~p~~~Fy~AEeYHQ~Yl~KNP~-gY~~ 160 (174)
T COG0225 84 PTSLNRQGNDRGTQYRSAIYYTNEEQKAIAEASIEELQASGYFKKPIVTEIEPAKNFYPAEEYHQDYLKKNPN-GYCH 160 (174)
T ss_pred CCCCCccCCcccccceeEEEEcCHHHHHHHHHHHHHHHHhccCCCCeEEEeeccccCcccHHHHHHHHHhCCC-Ccee
Confidence 999999999999999999999999999999999999987 45779999999999999999999999999996 5554
No 3
>PRK13014 methionine sulfoxide reductase A; Provisional
Probab=100.00 E-value=4.1e-71 Score=484.90 Aligned_cols=165 Identities=46% Similarity=0.839 Sum_probs=156.4
Q ss_pred CCCCeEEEEecCcchhhhhhhhcCCCeeEeeeeeeCCCCCCCCccccccCCCCceEEEEEEEcCCCCCHHHHHHHHHhcC
Q 024432 98 APGQQFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARH 177 (268)
Q Consensus 98 ~~~~~~a~fAgGCFWgvEa~F~~l~GVv~t~vGYaGG~~~nPTYe~VcsG~TGHaEaV~V~YDp~~ISye~LL~~F~~~h 177 (268)
..++++|+||||||||+|+.|++++||++|+|||+||.++||||++||+|.|||+|+|+|+|||++|||++||++||++|
T Consensus 5 ~~~~~~a~~agGCFWg~E~~f~~l~GV~~t~vGYagG~~~nPtY~~Vcsg~tgH~E~V~V~yDp~~iSy~~LL~~Ff~~h 84 (186)
T PRK13014 5 ADGMETATFAGGCFWGVEGVFQHVPGVVSVVSGYSGGHVDNPTYEQVCTGTTGHAEAVQITYDPKQVSYENLLQIFFSTH 84 (186)
T ss_pred CCCccEEEEecCCceeeHHHHccCCCEEEEEeeecCCCCCCCChhhhcCCCCCceEEEEEEECCCcCCHHHHHHHHHHhc
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCcceeeccCCHHHHHHHHHHHHHHHHh--cCCceEEEEEeCCCcccCchhHHHHHHhCCCCCcccc
Q 024432 178 DPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKV--LNRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGFKQS 255 (268)
Q Consensus 178 DPT~~nrQG~D~G~QYRSaIfy~deeQ~~~A~~s~~~lq~~--~~~~IvTeI~p~~~Fy~AEeYHQ~Yl~Knp~~g~~~s 255 (268)
|||+.||||+|+|+||||+|||+|++|+++|++++++++++ ++++|+|||+|+++||+||+|||+||+|||+.||||-
T Consensus 85 DPt~~~~Qg~D~G~QYRS~If~~~~eQ~~~a~~~~~~~~~~~~~~~~i~Tei~p~~~Fy~AEeyHQ~Yl~k~p~~~yc~~ 164 (186)
T PRK13014 85 DPTQLNRQGPDRGEQYRSAIFYHDEEQKKVAEAYIAQLDEAGIFKKPIVTPIKPYKNFYPAEDYHQDYLKKNPTHPYIVY 164 (186)
T ss_pred CCCccCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHHHhccccCCCcEEEEecCCCeeeCHHHHHHHHHhCCCCCccEE
Confidence 99999999999999999999999999999999999999763 6899999999999999999999999999999999986
Q ss_pred ccCCCCC
Q 024432 256 TEKGCND 262 (268)
Q Consensus 256 ~~kg~~~ 262 (268)
.-..+.+
T Consensus 165 ~~~~~~~ 171 (186)
T PRK13014 165 NDLPKGS 171 (186)
T ss_pred EeChhhh
Confidence 5544433
No 4
>PRK00058 methionine sulfoxide reductase A; Provisional
Probab=100.00 E-value=1.7e-70 Score=489.43 Aligned_cols=164 Identities=54% Similarity=0.896 Sum_probs=154.6
Q ss_pred CCCeEEEEecCcchhhhhhhhcCCCeeEeeeeeeCCCCCCCCccccccCCCCceEEEEEEEcCCCCCHHHHHHHHHhcCC
Q 024432 99 PGQQFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHD 178 (268)
Q Consensus 99 ~~~~~a~fAgGCFWgvEa~F~~l~GVv~t~vGYaGG~~~nPTYe~VcsG~TGHaEaV~V~YDp~~ISye~LL~~F~~~hD 178 (268)
.+++.|+||||||||+|+.|++++||++|+|||+||.++||||++||+|.|||+|+|+|+|||++|||++||++||++||
T Consensus 43 ~~~~~a~fagGCFWg~E~~F~~l~GV~~t~vGYagG~~~~PtY~~VcsG~tgH~EaV~V~YDp~~ISy~~LL~~Ff~~hD 122 (213)
T PRK00058 43 EGMEQAIFGMGCFWGAERLFWQLPGVYSTAVGYAGGYTPNPTYREVCSGRTGHAEVVRVVYDPAVISYEQLLQVFWENHD 122 (213)
T ss_pred CCccEEEEEccCcchhHHHHhcCCCEEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCccCCHHHHHHHHHHhcC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCcceeeccCCHHHHHHHHHHHHHHHHhcC----CceEEEEEeCCCcccCchhHHHHHHhCCCCCccc
Q 024432 179 PTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLN----RKIVTEILPAKKFYRAEEYHQQYLAKGGRFGFKQ 254 (268)
Q Consensus 179 PT~~nrQG~D~G~QYRSaIfy~deeQ~~~A~~s~~~lq~~~~----~~IvTeI~p~~~Fy~AEeYHQ~Yl~Knp~~g~~~ 254 (268)
||+.||||+|+|+||||+|||+|++|+++|++++++++++++ ++|+|+|+|+++||+||+|||+||+|||+ +||+
T Consensus 123 Pt~~n~QG~D~G~QYRS~Ify~~~eQ~~~a~~~~~~~~~~~~~~~~~~i~TeI~~~~~Fy~AEeyHQ~Yl~k~p~-~yc~ 201 (213)
T PRK00058 123 PTQGMRQGNDVGTQYRSAIYTLTPEQLAAAEASREAYQQALAAAGDGPITTEIAPAPPFYYAEDYHQQYLAKNPN-GYCG 201 (213)
T ss_pred CcccCCCCCCCCcCceEEEEeCCHHHHHHHHHHHHHHHHHhhhccCCCeEEEEecCCCcccCHHHHHHHHHhCCC-Cccc
Confidence 999999999999999999999999999999999999987652 48999999999999999999999999986 5654
Q ss_pred cccCCCCCcceeeC
Q 024432 255 STEKGCNDPIRCYG 268 (268)
Q Consensus 255 s~~kg~~~~ircyg 268 (268)
. .|+|||+.
T Consensus 202 ~-----~~~~~~~~ 210 (213)
T PRK00058 202 L-----GGTGVCCP 210 (213)
T ss_pred c-----CCCeeeCC
Confidence 2 38899874
No 5
>PRK14054 methionine sulfoxide reductase A; Provisional
Probab=100.00 E-value=5.1e-71 Score=478.99 Aligned_cols=167 Identities=46% Similarity=0.749 Sum_probs=159.7
Q ss_pred CCeEEEEecCcchhhhhhhhcCCCeeEeeeeeeCCCCCCCCccccccCCCCceEEEEEEEcCCCCCHHHHHHHHHhcCCC
Q 024432 100 GQQFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 179 (268)
Q Consensus 100 ~~~~a~fAgGCFWgvEa~F~~l~GVv~t~vGYaGG~~~nPTYe~VcsG~TGHaEaV~V~YDp~~ISye~LL~~F~~~hDP 179 (268)
++++|+||||||||+|+.|++++||++|+|||+||+++||||++||+|.|||+|+|+|+|||++|||++||++||++|||
T Consensus 2 ~~~~a~fagGCFWg~E~~f~~~~GV~~t~vGYagG~~~~PtY~~Vcsg~tgh~E~V~V~yDp~~isy~~Ll~~f~~~hDP 81 (172)
T PRK14054 2 MMETAVLAGGCFWGMEAPFDRVKGVISTRVGYTGGHVENPTYEQVCSGTTGHAEAVEITYDPAVISYRELLELFFQIHDP 81 (172)
T ss_pred CceEEEEEcCChhhhHHHHccCCCEEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCCcCCHHHHHHHHHHhCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCcceeeccCCHHHHHHHHHHHHHHHHh--cCCceEEEEEeCCCcccCchhHHHHHHhCCCCCcccccc
Q 024432 180 TMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKV--LNRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGFKQSTE 257 (268)
Q Consensus 180 T~~nrQG~D~G~QYRSaIfy~deeQ~~~A~~s~~~lq~~--~~~~IvTeI~p~~~Fy~AEeYHQ~Yl~Knp~~g~~~s~~ 257 (268)
|+.||||+|+|+||||+|||+|++|+++|++++++++++ ++++|+|||+|+++||+||+|||+||+|||+.+||+...
T Consensus 82 t~~~~Qg~D~G~qYRS~If~~~~~q~~~a~~~~~~~~~~~~~~~~i~Tei~~~~~Fy~AEeyHQ~Yl~k~p~~~~~~~~~ 161 (172)
T PRK14054 82 TTLNRQGNDRGTQYRSAIFYHDEEQKEIAEASIAELQASGLFDKPIVTEVEPAETFYEAEEYHQDYLEKNPNGYCCIFVI 161 (172)
T ss_pred CccCCCCCCCCcCceeEEEeCCHHHHHHHHHHHHHHHHhcccCCCcEEEEecCCCceECHHHHHHHHHhCCCCcceeecc
Confidence 999999999999999999999999999999999999876 789999999999999999999999999999988888888
Q ss_pred CCCCCccee
Q 024432 258 KGCNDPIRC 266 (268)
Q Consensus 258 kg~~~~irc 266 (268)
.++...++.
T Consensus 162 ~~~~~~~~~ 170 (172)
T PRK14054 162 PPKVLKKRE 170 (172)
T ss_pred CHHHHHHHh
Confidence 877666553
No 6
>TIGR00401 msrA methionine-S-sulfoxide reductase. This model describes peptide methionine sulfoxide reductase (MsrA), a repair enzyme for proteins that have been inactivated by oxidation. The enzyme from E. coli is coextensive with this model and has enzymatic activity. However, in all completed genomes in which this module is present, a second protein module, described in TIGR00357, is also found, and in several cases as part of the same polypeptide chain: N-terminal to this module in Helicobacter pylori and Haemophilus influenzae (as in PilB of Neisseria gonorrhoeae) but C-terminal to it in Treponema pallidum. PilB, containing both domains, has been shown to be important for the expression of adhesins in certain pathogens.
Probab=100.00 E-value=3.1e-70 Score=464.46 Aligned_cols=147 Identities=61% Similarity=1.022 Sum_probs=144.1
Q ss_pred eEEEEecCcchhhhhhhhcCCCeeEeeeeeeCCCCCCCCccccccCCCCceEEEEEEEcCCCCCHHHHHHHHHhcCCCCC
Q 024432 102 QFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTM 181 (268)
Q Consensus 102 ~~a~fAgGCFWgvEa~F~~l~GVv~t~vGYaGG~~~nPTYe~VcsG~TGHaEaV~V~YDp~~ISye~LL~~F~~~hDPT~ 181 (268)
++|+||||||||+|+.|++++||++|+|||+||+++||||++||+|.|||+|+|+|+|||++|||++||++||++||||+
T Consensus 1 ~~~~~agGCFWg~E~~f~~~~GV~~t~~GYagG~~~~PtY~~Vc~g~tgh~E~V~V~yDp~~is~~~Ll~~f~~~hdPt~ 80 (149)
T TIGR00401 1 EIATFAGGCFWGVEKYFWLIPGVYSTAVGYTGGYTPNPTYEEVCSGDTGHAEAVQVTYDPKVISYEELLDVFWEIHDPTQ 80 (149)
T ss_pred CEEEEecCCchhhHHHHhcCCCEEEEEEeeCCCCCCCCChhhcccCCCCceEEEEEEECCCcCcHHHHHHHHHHhCCCCc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCcceeeccCCHHHHHHHHHHHHHHHH--hcCCceEEEEEeCCCcccCchhHHHHHHhCC
Q 024432 182 LNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQK--VLNRKIVTEILPAKKFYRAEEYHQQYLAKGG 248 (268)
Q Consensus 182 ~nrQG~D~G~QYRSaIfy~deeQ~~~A~~s~~~lq~--~~~~~IvTeI~p~~~Fy~AEeYHQ~Yl~Knp 248 (268)
.||||+|+|+||||+|||+|++|+++|+++++++++ .++++|+|||+|+++||+||+|||+||+|||
T Consensus 81 ~~~Qg~d~G~qYRs~If~~~~~q~~~a~~~~~~~~~~~~~~~~i~tei~~~~~Fy~AE~yHQ~Yl~k~p 149 (149)
T TIGR00401 81 GNRQGNDIGTQYRSGIYYHSDEQEKAARASKERLQAAANYGDPIVTEIEPAENFYYAEEYHQQYLKKNP 149 (149)
T ss_pred CCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHHHHhcccCCCeEEEEecCCCeeecHHHHHHHHhhCc
Confidence 999999999999999999999999999999999987 5788999999999999999999999999997
No 7
>PF01625 PMSR: Peptide methionine sulfoxide reductase; InterPro: IPR002569 Peptide methionine sulphoxide reductase (Msr) reverses the inactivation of many proteins due to the oxidation of critical methionine residues by reducing methionine sulphoxide, Met(O), to methionine []. It is present in most living organisms, and the cognate structural gene belongs to the so-called minimum gene set [, ]. The domains: MsrA and MsrB, reduce different epimeric forms of methionine sulphoxide. This group represent MsrA, the crystal structure of which has been determined in a number of organisms. In Mycobacterium tuberculosis, the MsrA structure has been determined to 1.5 Angstrom resolution []. In contrast to the three catalytic cysteine residues found in previously characterised MsrA structures, M. tuberculosis MsrA represents a class containing only two functional cysteine residues. The overall structure shows no resemblance to the structures of MsrB (IPR002579 from INTERPRO) from other organisms; though the active sites show approximate mirror symmetry. In each case, conserved amino acid motifs mediate the stereo-specific recognition and reduction of the substrate. In a number of pathogenic bacteria including Neisseria gonorrhoeae, the MsrA and MsrB domains are fused; the MsrA being N-terminal to MsrB. This arrangement is reversed in Treponema pallidum. In N. gonorrhoeae and Neisseria meningitidis a thioredoxin domain is fused to the N terminus. This may function to reduce the active sites of the downstream MsrA and MsrB domains. ; GO: 0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor, 0019538 protein metabolic process, 0055114 oxidation-reduction process; PDB: 2GT3_A 1FF3_B 2IEM_A 3E0M_D 2J89_A 3PIN_B 3PIM_B 3PIL_B 2L90_A 3BQF_A ....
Probab=100.00 E-value=9.7e-69 Score=457.42 Aligned_cols=152 Identities=53% Similarity=0.911 Sum_probs=141.7
Q ss_pred eEEEEecCcchhhhhhhhcCCCeeEeeeeeeCCCCCCCCccccccCCCCceEEEEEEEcCCCCCHHHHHHHHHhcCCCCC
Q 024432 102 QFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTM 181 (268)
Q Consensus 102 ~~a~fAgGCFWgvEa~F~~l~GVv~t~vGYaGG~~~nPTYe~VcsG~TGHaEaV~V~YDp~~ISye~LL~~F~~~hDPT~ 181 (268)
++|+||||||||+|+.|++++||++|+|||+||+.+||||++||+|+|||+|||+|+|||++|||++||++||++||||+
T Consensus 1 e~a~fa~GCFW~~e~~f~~~~GV~~t~vGYagG~~~~PtY~~v~~g~tgh~E~V~V~yD~~~is~~~Ll~~f~~~~dPt~ 80 (155)
T PF01625_consen 1 EKAYFAGGCFWGVEAAFRRLPGVISTRVGYAGGTTPNPTYRQVCSGRTGHAEAVRVTYDPSVISYEELLDVFFRIHDPTQ 80 (155)
T ss_dssp EEEEEEESSHHHHHHHHHTSTTEEEEEEEEESSSSSS--HHHHHTTTTT-EEEEEEEEETTTS-HHHHHHHHHHHS-TTS
T ss_pred CEEEEecCCCeEhHHHHhhCCCEEEEEecccCCCCCCCcceeeecCCCCCeEEEEEEECCCcccHHHHHHHHHHhcCCcc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCcceeeccCCHHHHHHHHHHHHHHHHh-cCCceEEEEEeCCCcccCchhHHHHHHhCCCCCccc
Q 024432 182 LNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKV-LNRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGFKQ 254 (268)
Q Consensus 182 ~nrQG~D~G~QYRSaIfy~deeQ~~~A~~s~~~lq~~-~~~~IvTeI~p~~~Fy~AEeYHQ~Yl~Knp~~g~~~ 254 (268)
.||||+|+|+||||+|||+|++|+++|++++++++++ ++++|+|+|+|+++||+||+|||+||+|||.- ||+
T Consensus 81 ~~~Qg~d~G~qYrs~If~~~~~q~~~a~~~~~~~~~~~~~~~i~tei~p~~~Fy~AE~yHQ~Yl~k~p~~-yc~ 153 (155)
T PF01625_consen 81 VNGQGNDRGTQYRSAIFYHDEEQKKIAEASIAELQAKRFGRPIVTEIEPLKNFYPAEEYHQKYLEKNPNG-YCH 153 (155)
T ss_dssp TSEETTEESGGG-EEEEESSHHHHHHHHHHHHHHHHHTTSSSBS-EEEECEEEEEHHGGGTTHHHHSTTS-TTS
T ss_pred cccccCcccccceeEEecCCHHHHHHHHHHHHHHHHhcCCCCeEEEEecCCcEEECHHHHHHHHHhCCcc-cEe
Confidence 9999999999999999999999999999999999999 89999999999999999999999999999965 664
No 8
>PRK05528 methionine sulfoxide reductase A; Provisional
Probab=100.00 E-value=3.6e-65 Score=436.68 Aligned_cols=146 Identities=32% Similarity=0.591 Sum_probs=139.0
Q ss_pred eEEEEecCcchhhhhhhhcCCCeeEeeeeeeCCCCCCCCccccccCCCCceEEEEEEEcCCCCCHHHHHHHHHhcCCCCC
Q 024432 102 QFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTM 181 (268)
Q Consensus 102 ~~a~fAgGCFWgvEa~F~~l~GVv~t~vGYaGG~~~nPTYe~VcsG~TGHaEaV~V~YDp~~ISye~LL~~F~~~hDPT~ 181 (268)
++|+||||||||+|+.|++++||++|+|||+||+++||+ +|.|||+|+|+|+|||++|||++||++||++||||+
T Consensus 2 ~~a~fagGCFWg~E~~f~~l~GV~~t~vGYagG~~~~p~-----~~~tgH~E~V~V~yDp~~isy~~LL~~f~~~hdPt~ 76 (156)
T PRK05528 2 ETVYFAGGCLWGVQAFFKTLPGVIHTEAGRANGRTSTLD-----GPYDGYAECVKTHFDPRMVSITDLMGYLFEIIDPYS 76 (156)
T ss_pred CEEEEecCCchhhHHHHhcCCCEEEEEEEcCCCCCCCCC-----CCCCCcEEEEEEEECCCcCCHHHHHHHHHHhCCccc
Confidence 689999999999999999999999999999999999885 788999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCcceeeccCCHHHHHHHHHHHHHHHHhcCCceEEEEEeCCCcccCchhHHHHHHhCCCCCcccc
Q 024432 182 LNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGFKQS 255 (268)
Q Consensus 182 ~nrQG~D~G~QYRSaIfy~deeQ~~~A~~s~~~lq~~~~~~IvTeI~p~~~Fy~AEeYHQ~Yl~Knp~~g~~~s 255 (268)
.||||+|+|+||||+|||+|++|+++|+++++++++ .++|+|+|+|+.+||+||+|||+||+|||. +||+.
T Consensus 77 ~~~Qg~D~G~QYRS~If~~d~eQ~~~a~~~~~~~~~--~~~i~Tei~~~~~Fy~AE~yHQ~Yl~k~p~-~yc~~ 147 (156)
T PRK05528 77 VNKQGNDVGEKYRTGIYSEVDDHLIEARQFIERRED--ADKIAVEVLPLTNYVKSAEEHQDRLEKFPE-DYCHI 147 (156)
T ss_pred ccccCCCCCCCceEEEEeCCHHHHHHHHHHHHHHhc--CCCeEEEEecCCCeeecHHHHHHHHHhCCC-CCccc
Confidence 999999999999999999999999999999988875 468999999999999999999999999996 66653
No 9
>PRK05550 bifunctional methionine sulfoxide reductase B/A protein; Provisional
Probab=100.00 E-value=1.6e-64 Score=466.91 Aligned_cols=158 Identities=47% Similarity=0.831 Sum_probs=151.3
Q ss_pred CCCCeEEEEecCcchhhhhhhhcCCCeeEeeeeeeCCCCCCCCccccccCCCCceEEEEEEEcCCCCCHHHHHHHHHhcC
Q 024432 98 APGQQFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARH 177 (268)
Q Consensus 98 ~~~~~~a~fAgGCFWgvEa~F~~l~GVv~t~vGYaGG~~~nPTYe~VcsG~TGHaEaV~V~YDp~~ISye~LL~~F~~~h 177 (268)
....++|+||||||||+|+.|++++||++|+|||+||+++||||++||+|.|||+|||+|+|||++|||++||++||++|
T Consensus 124 ~~~~~~~~fagGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtY~~VcsG~tgH~EaV~V~yDp~~isy~~LL~~F~~~h 203 (283)
T PRK05550 124 AYDTEEAIFAGGCFWGVEYYFKKLPGVLSVESGYTGGDTKNPTYEQVCSGTTGHAEAVRVEFDPAKISYETLLKVFFEIH 203 (283)
T ss_pred cccceEEEEecCCchhhhhhHhhCcCEEEEEEeeCCCCCCCCChhhcccCCCCCeEEEEEEECCccCCHHHHHHHHHhhc
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCcceeeccCCHHHHHHHHHHHHHHHHhcCCceEEEEEeCCCcccCchhHHHHHHhCCCCCccccc
Q 024432 178 DPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGFKQST 256 (268)
Q Consensus 178 DPT~~nrQG~D~G~QYRSaIfy~deeQ~~~A~~s~~~lq~~~~~~IvTeI~p~~~Fy~AEeYHQ~Yl~Knp~~g~~~s~ 256 (268)
|||+.||||+|+|+||||+|||+|++|+++|++++++++++. ++|+|||+|+++||+||+|||+||+|||+-+||+..
T Consensus 204 DPt~~~~Qg~D~G~QYRS~If~~d~eq~~~A~~~~~~~~~~~-~~i~TeI~~l~~Fy~AEeyHQ~Yl~k~p~~~yc~~~ 281 (283)
T PRK05550 204 DPTQLNRQGPDIGTQYRSAIFYHDDEQKQIAEKLIAELTKKG-YPVVTEVEAAGPFYPAEDYHQDYYEKHGKQPYCHIV 281 (283)
T ss_pred CCCccCCCCCCCCcCceEEEEeCCHHHHHHHHHHHHHHHhcC-CceEEEEeeCCCeeECHHHHHHHHHhCCCCCeeeee
Confidence 999999999999999999999999999999999999998764 499999999999999999999999999987788654
No 10
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=100.00 E-value=2.5e-63 Score=489.62 Aligned_cols=173 Identities=41% Similarity=0.754 Sum_probs=161.6
Q ss_pred CCCCCCCCCCCCeEEEEecCcchhhhhhhhcCCCeeEeeeeeeCCCCCCCCccccccCCCCceEEEEEEEcCCCCCHHHH
Q 024432 90 QGPDDDVPAPGQQFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTL 169 (268)
Q Consensus 90 ~~p~~~~~~~~~~~a~fAgGCFWgvEa~F~~l~GVv~t~vGYaGG~~~nPTYe~VcsG~TGHaEaV~V~YDp~~ISye~L 169 (268)
.+-..+.+..+.++|+||||||||+|+.|++++||++|+|||+||+++||||++||+| |||+|+|+|+|||++|||++|
T Consensus 187 ~~q~~d~~~~~~~~~~~agGCFWg~e~~f~~~~GV~~t~~GYagG~~~~PtY~~Vc~g-tgH~E~V~V~yDp~~is~~~L 265 (521)
T PRK14018 187 DGQKKDSKIMNTRTIYLAGGCFWGLEAYFQRIDGVVDAVSGYANGNTKNPSYEDVYRH-SGHAETVKVTYDADKLSLDTI 265 (521)
T ss_pred cCCccccCCCCccEEEEecCCchhhHHHHccCCCEEEEEEeeCCCCCCCCChhhccCC-CCcEEEEEEEECCCcCcHHHH
Confidence 3333444556789999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCCCCCCCcceeeccCCHHHHHHHHHHHHHHHHhcCCceEEEEEeCCCcccCchhHHHHHHhCCC
Q 024432 170 LDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAKGGR 249 (268)
Q Consensus 170 L~~F~~~hDPT~~nrQG~D~G~QYRSaIfy~deeQ~~~A~~s~~~lq~~~~~~IvTeI~p~~~Fy~AEeYHQ~Yl~Knp~ 249 (268)
|++||++||||+.||||+|+|+||||+|||+|++|+++|++++++++++++++|+|||+|+++||+||+|||+||+|||+
T Consensus 266 l~~f~~~~dPt~~~~Qg~d~G~qYrs~I~~~~~eq~~~a~~~~~~~~~~~~~~i~tei~~~~~Fy~AE~yHQ~Yl~k~p~ 345 (521)
T PRK14018 266 LQYYFRVVDPTSLNKQGNDTGTQYRSGVYYTDPADKAVIAAALKREQQKYQLPLVVENEPLKNFYDAEEYHQDYLIKNPN 345 (521)
T ss_pred HHHHHHhCCCccccccCCCCCCCceEEEEeCCHHHHHHHHHHHHHHHHHcCCCeEEEEecCCCeeecHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred CCccccccCCCCCcc
Q 024432 250 FGFKQSTEKGCNDPI 264 (268)
Q Consensus 250 ~g~~~s~~kg~~~~i 264 (268)
|||+...+...+++
T Consensus 346 -~yc~~~~~~~~~~~ 359 (521)
T PRK14018 346 -GYCHIDLRKADEPL 359 (521)
T ss_pred -ceeEeecccccccc
Confidence 89987776666554
No 11
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=94.80 E-value=0.045 Score=38.71 Aligned_cols=47 Identities=32% Similarity=0.620 Sum_probs=40.4
Q ss_pred cCcchhhhhhhhcCCCeeEeeeeeeCCCCCCCCccccccCCCCceEEEEEEEcCCCCCHHHHHHHH
Q 024432 108 AGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMF 173 (268)
Q Consensus 108 gGCFWgvEa~F~~l~GVv~t~vGYaGG~~~nPTYe~VcsG~TGHaEaV~V~YDp~~ISye~LL~~F 173 (268)
.+|-+-+|..+.+++||.++.+=+..+. |.|.||+..++.++|.+..
T Consensus 10 ~~C~~~v~~~l~~~~GV~~v~vd~~~~~-------------------v~v~~~~~~~~~~~i~~~i 56 (62)
T PF00403_consen 10 EGCAKKVEKALSKLPGVKSVKVDLETKT-------------------VTVTYDPDKTSIEKIIEAI 56 (62)
T ss_dssp HHHHHHHHHHHHTSTTEEEEEEETTTTE-------------------EEEEESTTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCcEEEEECCCCE-------------------EEEEEecCCCCHHHHHHHH
Confidence 5788999999999999999998775443 7899999999999988764
No 12
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=85.79 E-value=1.6 Score=32.56 Aligned_cols=47 Identities=23% Similarity=0.493 Sum_probs=42.0
Q ss_pred ecCcchhhhhhhhcCCCeeEeeeeeeCCCCCCCCccccccCCCCceEEEEEEEcCCCCCHHHHHHH
Q 024432 107 GAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDM 172 (268)
Q Consensus 107 AgGCFWgvEa~F~~l~GVv~t~vGYaGG~~~nPTYe~VcsG~TGHaEaV~V~YDp~~ISye~LL~~ 172 (268)
.++|.=-++..+..++||.++.+-...|. +.|.||+..++-++|.+.
T Consensus 13 C~~C~~~V~~al~~v~gv~~v~v~l~~~~-------------------~~V~~d~~~~~~~~i~~a 59 (71)
T COG2608 13 CGHCVKTVEKALEEVDGVASVDVDLEKGT-------------------ATVTFDSNKVDIEAIIEA 59 (71)
T ss_pred cHHHHHHHHHHHhcCCCeeEEEEEcccCe-------------------EEEEEcCCcCCHHHHHHH
Confidence 36788889999999999999999887664 789999999999999988
No 13
>PF02682 AHS1: Allophanate hydrolase subunit 1; InterPro: IPR003833 Allophanate hydrolase catalyses the second reaction in an ATP-dependent, two-step degradation of urea to ammonia and C02. This follows the action of the biotin-containing urea carboxylase. Saccharomyces cerevisiae can use urea as a sole nitrogen source via this degradation pathway []. In yeast, the fusion of allophanate hydrolase to urea carboxylase is called urea amidolyase. In bacteria, the second step in the urea degradation pathway is also the ATP-dependent allophanate hydrolase. The gene encoding this enzyme is found adjacent to the urea carboxylase gene []. Allophanate hydrolase has strict substrate specificity, as analogues of allophanate are not hydrolysed by it []. This domain represents subunit 1 of allophanate hydrolase (AHS1), which is found in urea carboxylase.; PDB: 3VA7_A 3MML_H 3OEP_A 3OPF_C 3ORE_A 2ZP2_A 2KWA_A 2PHC_B.
Probab=70.29 E-value=7 Score=35.01 Aligned_cols=66 Identities=12% Similarity=0.159 Sum_probs=43.7
Q ss_pred hhhhhhhhc--CCCeeEeeeeeeCCCCCCCCccccccCCCCceEEEEEEEcCCCCCHHHHHHHHHhcCCC-CCCCCCCCC
Q 024432 112 WGVELAFQR--VPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP-TMLNRQGND 188 (268)
Q Consensus 112 WgvEa~F~~--l~GVv~t~vGYaGG~~~nPTYe~VcsG~TGHaEaV~V~YDp~~ISye~LL~~F~~~hDP-T~~nrQG~D 188 (268)
|.+.+.+++ ++||++++.+|. .|-|.|||..+++.+|.+..-...+- ... -..
T Consensus 28 ~al~~~l~~~~~~gi~e~vp~~~---------------------sllV~fdp~~~~~~~l~~~l~~~~~~~~~~---~~~ 83 (202)
T PF02682_consen 28 LALARALRAAPLPGIVEVVPAYR---------------------SLLVHFDPLRIDRAALRAALEELLASPQPS---EKP 83 (202)
T ss_dssp HHHHHHHHHHT-TTEEEEEEESS---------------------EEEEEESTTTSHHHHHHHHHHHHHCCCCSS---CCC
T ss_pred HHHHHHHhcCCCCCeEEeecccc---------------------EEEEEEcCCcCCHHHHHHHHHHhhhhcccc---ccC
Confidence 666677777 899999998883 37799999999999988876554322 111 111
Q ss_pred CCCCcceeeccCC
Q 024432 189 VGTQYRSGIYFYT 201 (268)
Q Consensus 189 ~G~QYRSaIfy~d 201 (268)
-+...+-=|.|.+
T Consensus 84 ~~r~~~iPV~Y~~ 96 (202)
T PF02682_consen 84 PSRLIEIPVCYDG 96 (202)
T ss_dssp CEEEEEEEEEEST
T ss_pred CCceEEEEEEECC
Confidence 2223566677774
No 14
>PF08098 ATX_III: Anemonia sulcata toxin III family; InterPro: IPR012509 This entry occurs within the Anemonia sulcata toxin III (ATX III) neurotoxin family. ATX III is a neurotoxin that is produced by sea anemone; it adopts a compact structure containing four reverse turns and two other chain reversals, but no regular alpha-helix or beta-sheet. A hydrophobic patch found on the surface of the peptide may constitute part of the sodium channel binding surface [].; GO: 0019871 sodium channel inhibitor activity, 0009405 pathogenesis, 0042151 nematocyst; PDB: 1ANS_A.
Probab=67.87 E-value=1.9 Score=27.50 Aligned_cols=9 Identities=44% Similarity=1.409 Sum_probs=5.4
Q ss_pred EecCcchhh
Q 024432 106 FGAGCFWGV 114 (268)
Q Consensus 106 fAgGCFWgv 114 (268)
+-||||||-
T Consensus 11 ~~~gC~WGQ 19 (27)
T PF08098_consen 11 YTGGCPWGQ 19 (27)
T ss_dssp TTTT-SSS-
T ss_pred eecCCcccc
Confidence 347899983
No 15
>COG2049 DUR1 Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]
Probab=66.04 E-value=9.4 Score=35.34 Aligned_cols=40 Identities=33% Similarity=0.614 Sum_probs=30.5
Q ss_pred hhhhhhhhcC--CCeeEeeeeeeCCCCCCCCccccccCCCCceEEEEEEEcCCCCCHHHHHHH
Q 024432 112 WGVELAFQRV--PGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDM 172 (268)
Q Consensus 112 WgvEa~F~~l--~GVv~t~vGYaGG~~~nPTYe~VcsG~TGHaEaV~V~YDp~~ISye~LL~~ 172 (268)
|.+.+.++.. +||++++.||. .+.|.||+.+++..+|++.
T Consensus 26 ~al~~~l~~~~~~gvve~vP~~~---------------------sllv~~d~~~~~~~~l~~~ 67 (223)
T COG2049 26 WALARALEAAPLPGVVEIVPGYR---------------------SLLVIYDPPRLDPQELLER 67 (223)
T ss_pred HHHHHHHHhcCCCCeEEecccce---------------------eEEEEecccccCHHHHHHH
Confidence 4455555544 49999999985 3789999999998877764
No 16
>COG3727 Vsr DNA G:T-mismatch repair endonuclease [DNA replication, recombination, and repair]
Probab=63.82 E-value=2.6 Score=36.67 Aligned_cols=46 Identities=30% Similarity=0.603 Sum_probs=28.4
Q ss_pred cCCch---hhhhhccCCCCCCCCCCCccccccCCCCCCCCCCCCCeEEEEecCcchhh
Q 024432 60 YKPPM---NILNKLGFGFRPSPDPASTENSAIAQGPDDDVPAPGQQFSQFGAGCFWGV 114 (268)
Q Consensus 60 ~~~~m---~~l~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~fAgGCFWgv 114 (268)
..|-| ++|..+||-+..-.. .++-.|| ..-++...++|--||||.-
T Consensus 22 TkpE~~lr~~L~~~G~rfR~~~~-------~lpGkPD--iVl~~y~~viFvHGCFWh~ 70 (150)
T COG3727 22 TKPEKRLRSLLTGQGLRFRVQDK-------DLPGKPD--IVLPKYRCVIFVHGCFWHG 70 (150)
T ss_pred ccHHHHHHHHHhhcceEEEecCC-------CCCCCCC--EeecCceEEEEEeeeeccC
Confidence 45554 678888887762221 1233332 2234578999999999983
No 17
>PF03852 Vsr: DNA mismatch endonuclease Vsr; InterPro: IPR004603 This entry represents VSR (very short patch repair) endonucleases, which occur in a variety of bacteria. VSR recognises a TG mismatched base pair, generated after spontaneous deamination of methylated cytosines, and cleaves the phosphate backbone on the 5' side of the thymine []. GT mismatches can lead to C-to-T transition mutations if not repaired. VSR repairs the mismatches in favour of the G-containing strand. In Escherichia coli, this endonuclease nicks double-stranded DNA within the sequence CT(AT)GN or NT(AT)GG next to the thymidine residue, which is mismatched to 2'-deoxyguanosine []. The incision is mismatch-dependent and strand specific. The structure of VSR is similar to the core structure of restriction endonucleases, which have a 3-layer alpha/beta/alpha topology []. ; GO: 0004519 endonuclease activity, 0006298 mismatch repair; PDB: 1ODG_A 1VSR_A 1CW0_A.
Probab=63.82 E-value=2 Score=33.61 Aligned_cols=15 Identities=40% Similarity=1.061 Sum_probs=12.2
Q ss_pred CCCeEEEEecCcchh
Q 024432 99 PGQQFSQFGAGCFWG 113 (268)
Q Consensus 99 ~~~~~a~fAgGCFWg 113 (268)
++.+.|+|--||||.
T Consensus 54 ~~~k~aIFVdGCFWH 68 (75)
T PF03852_consen 54 PKYKIAIFVDGCFWH 68 (75)
T ss_dssp GGGTEEEEEE-TTTT
T ss_pred CCCCEEEEEecceeC
Confidence 457899999999997
No 18
>TIGR00003 copper ion binding protein. This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (Pfam family pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases.
Probab=60.64 E-value=37 Score=20.89 Aligned_cols=47 Identities=19% Similarity=0.338 Sum_probs=36.3
Q ss_pred cCcchhhhhhhhcCCCeeEeeeeeeCCCCCCCCccccccCCCCceEEEEEEEcCCCCCHHHHHHHH
Q 024432 108 AGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMF 173 (268)
Q Consensus 108 gGCFWgvEa~F~~l~GVv~t~vGYaGG~~~nPTYe~VcsG~TGHaEaV~V~YDp~~ISye~LL~~F 173 (268)
..|-|-+|..+...+||..+.+...++ .+.|.||+....-..+....
T Consensus 14 ~~c~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~ 60 (68)
T TIGR00003 14 QHCVDKIEKFVGELEGVSKVQVKLEKA-------------------SVKVEFDAPQATEICIAEAI 60 (68)
T ss_pred HHHHHHHHHHHhcCCCEEEEEEEcCCC-------------------EEEEEeCCCCCCHHHHHHHH
Confidence 479999999999999999887776544 26678888777777776554
No 19
>PF04536 TPM: TLP18.3, Psb32 and MOLO-1 founding proteins of phosphatase; InterPro: IPR007621 This is a family of uncharacterised proteins. They are found in both eukarya and eubacteria. In eubacteria the region is towards the N-terminal of the protein and is accompanied by an N-terminal signal sequence. The C-terminal of eubacterial proteins typically contains one or more putative transmembrane regions. In eukaryotes the region is not accompanied by a signal sequence.; PDB: 3PTJ_A 3PW9_A 3PVH_A 2KPT_A 2KW7_A.
Probab=55.03 E-value=31 Score=26.76 Aligned_cols=49 Identities=22% Similarity=0.325 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCceEEEEEeCCCcccCchhHHHHHHhCC
Q 024432 200 YTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAKGG 248 (268)
Q Consensus 200 ~deeQ~~~A~~s~~~lq~~~~~~IvTeI~p~~~Fy~AEeYHQ~Yl~Knp 248 (268)
-+++|++..++.++++++..+..|++.+.+--+-..+|+|=++++++++
T Consensus 2 Ls~~~~~~l~~~l~~~~~~t~~~i~Vvtv~~~~~~~~~~~A~~~~~~~~ 50 (119)
T PF04536_consen 2 LSQEERERLNQALAKLEKKTGVQIVVVTVPSLPGQDIEDYAQQLFERWG 50 (119)
T ss_dssp S-HHHHHHHHHHHHHHHHHC--EEEEEEESB-TTS-HHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHHhhCCEEEEEEEcCCCCCCHHHHHHHHHHHhC
Confidence 4788999999999999999888888888776666999999999999954
No 20
>smart00796 AHS1 Allophanate hydrolase subunit 1. This domain represents subunit 1 of allophanate hydrolase (AHS1).
Probab=50.03 E-value=33 Score=30.66 Aligned_cols=68 Identities=21% Similarity=0.244 Sum_probs=42.1
Q ss_pred hhhhhhhh--cCCCeeEeeeeeeCCCCCCCCccccccCCCCceEEEEEEEcCCCCCHHHHHHHHHhc-CCCCCCCCCCCC
Q 024432 112 WGVELAFQ--RVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWAR-HDPTMLNRQGND 188 (268)
Q Consensus 112 WgvEa~F~--~l~GVv~t~vGYaGG~~~nPTYe~VcsG~TGHaEaV~V~YDp~~ISye~LL~~F~~~-hDPT~~nrQG~D 188 (268)
|.+...++ .++||++++.+|. .|.|.|||.++++.+|++..=.. .++. +.+...
T Consensus 28 ~~l~~~l~~~~~~gi~e~vp~~~---------------------sllv~fdp~~~~~~~l~~~l~~~~~~~~--~~~~~~ 84 (201)
T smart00796 28 LALARALRAAPLPGVVELVPGYR---------------------SLLVHFDPLVIDPAALLARLRALEALPL--AEALEV 84 (201)
T ss_pred HHHHHHHHhcCCCCeEEccccce---------------------EEEEEEcCCCCCHHHHHHHHHHHHhccc--ccccCC
Confidence 55555555 3689999987773 47799999999999887754221 1211 111122
Q ss_pred CCCCcceeeccCCH
Q 024432 189 VGTQYRSGIYFYTP 202 (268)
Q Consensus 189 ~G~QYRSaIfy~de 202 (268)
-++.++-=|.|.++
T Consensus 85 ~~r~~~IPV~Y~~~ 98 (201)
T smart00796 85 PGRIIEIPVCYGGE 98 (201)
T ss_pred CCcEEEEeeEeCCC
Confidence 33466666777754
No 21
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=45.79 E-value=67 Score=36.24 Aligned_cols=69 Identities=19% Similarity=0.287 Sum_probs=43.1
Q ss_pred CCCeeEeeeeeeCCCCCCCCccccccCCCCceEEEEEEEcCCCCCHHHHHHHHHhc---CCCCCCCCCCCCCCCCcceee
Q 024432 121 VPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWAR---HDPTMLNRQGNDVGTQYRSGI 197 (268)
Q Consensus 121 l~GVv~t~vGYaGG~~~nPTYe~VcsG~TGHaEaV~V~YDp~~ISye~LL~~F~~~---hDPT~~nrQG~D~G~QYRSaI 197 (268)
++||+++..||. .+.|.|||.+++.++|++..-.. .+... .. ..-++..+-=+
T Consensus 842 ~~gi~e~vP~~~---------------------Sl~v~~dp~~~~~~~l~~~l~~~~~~~~~~~-~~--~~~~r~v~iPv 897 (1201)
T TIGR02712 842 LPGIIDLTPGIR---------------------SLQIHYDPRVISQSELLEVLVAIEEQLPAAE-DL--QVPSRIVHLPL 897 (1201)
T ss_pred CCCeEEeccccE---------------------EEEEEECCCCCCHHHHHHHHHHHHhhccccc-cc--CCCCcEEEEEe
Confidence 679999887773 47899999999999987755332 22211 11 11223455557
Q ss_pred ccCCHHHHHHHHHHHH
Q 024432 198 YFYTPEQEKAAKESLE 213 (268)
Q Consensus 198 fy~deeQ~~~A~~s~~ 213 (268)
.|.++.-++.+++..+
T Consensus 898 ~y~~~~~~~~~~ry~~ 913 (1201)
T TIGR02712 898 SWEDPATLLAVERYME 913 (1201)
T ss_pred EECCHHHHHHHHHHHh
Confidence 7877766555544443
No 22
>COG5053 CDC33 Translation initiation factor 4E (eIF-4E) [Translation, ribosomal structure and biogenesis]
Probab=42.81 E-value=42 Score=30.98 Aligned_cols=62 Identities=21% Similarity=0.154 Sum_probs=44.8
Q ss_pred HHHHHHHHHhcCCCCCCCC---CCCCCCCCcceeeccCCHHHHHHHHHHHHHHHHhcCCceEEEE
Q 024432 166 FDTLLDMFWARHDPTMLNR---QGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEI 227 (268)
Q Consensus 166 ye~LL~~F~~~hDPT~~nr---QG~D~G~QYRSaIfy~deeQ~~~A~~s~~~lq~~~~~~IvTeI 227 (268)
+..||..++..+|||...- -|+.+..-||-||+..+...++...+...++.+-++-.++-.+
T Consensus 132 l~tlla~igeT~Dp~~~ei~GvV~n~rkgfyKlAiWtr~~~n~dvl~~ig~efk~vl~ls~~~tl 196 (217)
T COG5053 132 LRTLLAAIGETLDPTGSEIGGVVGNMRKGFYKLAIWTRNCNNKDVLGAIGNEFKQVLELSDVETL 196 (217)
T ss_pred HHHHHHHHhhccCCCCCeeccEEEEeecCceEEEEEecCCCcHHHHHHHHHHHHhcccccceeEE
Confidence 3456777899999975322 2466678999999999988888888888877665544444333
No 23
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=41.60 E-value=34 Score=36.56 Aligned_cols=46 Identities=30% Similarity=0.563 Sum_probs=38.5
Q ss_pred cCcchhhhhhhhcCCCeeEeeeeeeCCCCCCCCccccccCCCCceEEEEEEEcCCCCC-HHHHHHHH
Q 024432 108 AGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECS-FDTLLDMF 173 (268)
Q Consensus 108 gGCFWgvEa~F~~l~GVv~t~vGYaGG~~~nPTYe~VcsG~TGHaEaV~V~YDp~~IS-ye~LL~~F 173 (268)
+.|-|-+| .+.+++||.+..|-++ +|.+.|.||+..++ .+++...-
T Consensus 14 a~C~~~ie-~l~~~~gV~~~~vn~~-------------------t~~~~v~~~~~~~~~~~~~~~~v 60 (713)
T COG2217 14 AACASRIE-ALNKLPGVEEARVNLA-------------------TERATVVYDPEEVDLPADIVAAV 60 (713)
T ss_pred HHHHHHHH-HHhcCCCeeEEEeecc-------------------cceEEEEecccccccHHHHHHHH
Confidence 45899999 9999999999999874 56688999998888 67777664
No 24
>PHA03303 envelope glycoprotein L; Provisional
Probab=40.49 E-value=11 Score=33.36 Aligned_cols=15 Identities=40% Similarity=0.944 Sum_probs=13.6
Q ss_pred ecCcchhhhhhhhcC
Q 024432 107 GAGCFWGVELAFQRV 121 (268)
Q Consensus 107 AgGCFWgvEa~F~~l 121 (268)
..||+||.+..|+++
T Consensus 143 ~~GCV~g~~~~~~~~ 157 (159)
T PHA03303 143 DIGCVFGADNLFQRL 157 (159)
T ss_pred CCCccccHHHHHHHh
Confidence 579999999999986
No 25
>PF11491 DUF3213: Protein of unknown function (DUF3213) ; InterPro: IPR021583 The backbone structure of this family of proteins has been determined however the function remains unknown. The protein has an alpha and beta structure with a ferredoxin-like fold []. ; PDB: 2F40_A.
Probab=28.88 E-value=34 Score=27.59 Aligned_cols=29 Identities=24% Similarity=0.313 Sum_probs=13.9
Q ss_pred CceEEEEEEEcCCCCCHHHHHHHHHhcCCC
Q 024432 150 NHNEVVRVQYDPKECSFDTLLDMFWARHDP 179 (268)
Q Consensus 150 GHaEaV~V~YDp~~ISye~LL~~F~~~hDP 179 (268)
|.+-.-.|.||+++++-++||+.+ .-..|
T Consensus 33 gYar~g~VifDe~kl~~e~lL~~l-e~~kp 61 (88)
T PF11491_consen 33 GYARNGFVIFDESKLSKEELLEML-EEFKP 61 (88)
T ss_dssp TTSS--EEE--B-S-SHHHH---H-HHTTT
T ss_pred ccccceEEEECcccCCHHHHHHHH-HhcCh
Confidence 344555799999999999999765 33344
No 26
>TIGR00370 conserved hypothetical protein TIGR00370.
Probab=27.03 E-value=1e+02 Score=27.82 Aligned_cols=39 Identities=23% Similarity=0.427 Sum_probs=27.2
Q ss_pred hhhhhhhhcCCCeeEeeeeeeCCCCCCCCccccccCCCCceEEEEEEEcCCCCCHHHHHHH
Q 024432 112 WGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDM 172 (268)
Q Consensus 112 WgvEa~F~~l~GVv~t~vGYaGG~~~nPTYe~VcsG~TGHaEaV~V~YDp~~ISye~LL~~ 172 (268)
|.+-+.+++.+||++++.+|. .|.|.|||..+ ..+|+..
T Consensus 23 ~~l~~~l~~~~gi~e~vP~~~---------------------sllv~fdp~~~-~~~l~~~ 61 (202)
T TIGR00370 23 WAAAAYLEEQPGFVECIPGMN---------------------NLTVFYDMYEV-YKHLPQR 61 (202)
T ss_pred HHHHHHHhcCCCcEEeecccE---------------------EEEEEECchhh-HHHHHHH
Confidence 444455554589999887773 37799999987 6666654
No 27
>KOG4309 consensus Transcription mediator-related factor [Transcription]
Probab=26.15 E-value=64 Score=29.55 Aligned_cols=47 Identities=19% Similarity=0.299 Sum_probs=31.6
Q ss_pred eEEEEEEEcCCCCC------HHHHHHHHHhcCCCCCCCCCCCCCCCCcceeeccCCH
Q 024432 152 NEVVRVQYDPKECS------FDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTP 202 (268)
Q Consensus 152 aEaV~V~YDp~~IS------ye~LL~~F~~~hDPT~~nrQG~D~G~QYRSaIfy~de 202 (268)
-=+|+|+|||.+|- ..|.|.-||-.|-|+.. .-.|-|=...||-.-+
T Consensus 139 Gi~vEIEY~pcvI~~~Cw~M~~Eflqsflg~~~p~aP----~~fg~t~h~~~y~p~D 191 (217)
T KOG4309|consen 139 GISVEIEYGPCVIASDCWSMLLEFLQSFLGSHTPGAP----AVFGNTRHDAVYGPAD 191 (217)
T ss_pred eEEEEEeeCCEEEhHHHHHHHHHHHHHHhcccCCCch----HhhcCccCccccCcHH
Confidence 34799999999976 36778889999988743 2234444455654433
No 28
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=25.46 E-value=26 Score=36.54 Aligned_cols=16 Identities=38% Similarity=0.729 Sum_probs=12.9
Q ss_pred EEecCcchhhhhhhhc
Q 024432 105 QFGAGCFWGVELAFQR 120 (268)
Q Consensus 105 ~fAgGCFWgvEa~F~~ 120 (268)
-||.||=||+|.+=..
T Consensus 397 ~fa~g~dwcle~lk~s 412 (840)
T KOG2003|consen 397 DFAAGCDWCLESLKAS 412 (840)
T ss_pred chhcccHHHHHHHHHh
Confidence 3899999999987543
No 29
>PF02617 ClpS: ATP-dependent Clp protease adaptor protein ClpS; InterPro: IPR003769 In the bacterial cytosol, ATP-dependent protein degradation is performed by several different chaperone-protease pairs, including ClpAP. ClpS directly influences the ClpAP machine by binding to the N-terminal domain of the chaperone ClpA. The degradation of ClpAP substrates, both SsrA-tagged proteins and ClpA itself, is specifically inhibited by ClpS. ClpS modifies ClpA substrate specificity, potentially redirecting degradation by ClpAP toward aggregated proteins []. ClpS is a small alpha/beta protein that consists of three alpha-helices connected to three antiparallel beta-strands []. The protein has a globular shape, with a curved layer of three antiparallel alpha-helices over a twisted antiparallel beta-sheet. Dimerization of ClpS may occur through its N-terminal domain. This short extended N-terminal region in ClpS is followed by the central seven-residue beta-strand, which is flanked by two other beta-strands in a small beta-sheet. ; GO: 0030163 protein catabolic process; PDB: 3O2O_B 1MBU_D 3O2B_C 2WA9_D 3O1F_A 2W9R_A 1MG9_A 1MBX_C 2WA8_C 1R6O_D ....
Probab=24.01 E-value=94 Score=23.56 Aligned_cols=68 Identities=15% Similarity=0.194 Sum_probs=36.4
Q ss_pred EEEcCCCCCHHHHHHHHHhcCCCCCCCC-----CCCCCCCCcceeeccCCHHHHHHHHHHHHHHHHhcCCceEEEE
Q 024432 157 VQYDPKECSFDTLLDMFWARHDPTMLNR-----QGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEI 227 (268)
Q Consensus 157 V~YDp~~ISye~LL~~F~~~hDPT~~nr-----QG~D~G~QYRSaIfy~deeQ~~~A~~s~~~lq~~~~~~IvTeI 227 (268)
|.||.++=||+...+..-+..+.+.... +-+..| |..|+..+.++.+...+.+.+..+..+.|+.++|
T Consensus 10 vL~NDe~ht~~~Vi~~L~~~~~~s~~~A~~~a~~v~~~G---~avv~~~~~e~ae~~~~~l~~~g~~~~~PL~~ti 82 (82)
T PF02617_consen 10 VLWNDEVHTFEQVIDVLRRVFGCSEEQARQIAMEVHREG---RAVVGTGSREEAEEYAEKLQRAGRDSGHPLRATI 82 (82)
T ss_dssp EEE--SSSBHHHHHHHHHHHC---HHHHHHHHHHHHHHS---EEEEEEEEHHHHHHHHHHHHHHHHHTT---EEEE
T ss_pred EEEcCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHhHcC---CEeeeeCCHHHHHHHHHHHHHHhhccCCCeEEeC
Confidence 7899999999999999888776442110 001112 4666666666655555555555444555665554
No 30
>PRK14627 hypothetical protein; Provisional
Probab=21.73 E-value=58 Score=26.34 Aligned_cols=17 Identities=24% Similarity=0.448 Sum_probs=15.4
Q ss_pred CCceEEEEEEEcCCCCC
Q 024432 149 TNHNEVVRVQYDPKECS 165 (268)
Q Consensus 149 TGHaEaV~V~YDp~~IS 165 (268)
+|+-|++.|..||+.+.
T Consensus 43 ~G~~~v~~i~Idp~ll~ 59 (100)
T PRK14627 43 NGHREVQSITISPEVVD 59 (100)
T ss_pred EcCccEEEEEECHHHcC
Confidence 58899999999999885
No 31
>PF03622 IBV_3B: IBV 3B protein ; InterPro: IPR005295 These proteins are the product of ORF 3B from Infectious bronchitis virus). Currently, the function of this protein remains unknown [].
Probab=20.69 E-value=46 Score=25.37 Aligned_cols=16 Identities=25% Similarity=0.706 Sum_probs=14.3
Q ss_pred CeEEEEecCcchhhhh
Q 024432 101 QQFSQFGAGCFWGVEL 116 (268)
Q Consensus 101 ~~~a~fAgGCFWgvEa 116 (268)
.+..|.-+|.||-+|.
T Consensus 37 FE~cyyrgGsfwEieS 52 (64)
T PF03622_consen 37 FEVCYYRGGSFWEIES 52 (64)
T ss_pred eeEEEEecCcEEEeec
Confidence 5789999999999886
No 32
>TIGR00632 vsr DNA mismatch endonuclease Vsr. All proteins in this family for which functions are known are G:T mismatch endonucleases that function in a specialized mismatch repair process used usually to repair G:T mismatches in specific sections of the genome. This family was based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Members of this family typically are found near to a DNA cytosine methyltransferase.
Probab=20.23 E-value=58 Score=27.35 Aligned_cols=16 Identities=31% Similarity=0.665 Sum_probs=13.8
Q ss_pred CCCCeEEEEecCcchh
Q 024432 98 APGQQFSQFGAGCFWG 113 (268)
Q Consensus 98 ~~~~~~a~fAgGCFWg 113 (268)
-.+.+.|+|--||||.
T Consensus 53 ~~~~klaIfVDGcfWH 68 (117)
T TIGR00632 53 FDEYRCVIFIHGCFWH 68 (117)
T ss_pred ecCCCEEEEEcccccc
Confidence 3467899999999999
Done!