Query 024433
Match_columns 268
No_of_seqs 117 out of 1187
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 04:34:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024433.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024433hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0667 Tas Predicted oxidored 100.0 6.1E-49 1.3E-53 347.1 25.7 233 4-239 75-310 (316)
2 KOG1575 Voltage-gated shaker-l 100.0 2.4E-47 5.3E-52 331.7 25.2 243 2-248 85-335 (336)
3 COG0656 ARA1 Aldo/keto reducta 100.0 2.1E-47 4.5E-52 326.3 21.1 196 2-240 66-266 (280)
4 TIGR01293 Kv_beta voltage-depe 100.0 4.3E-45 9.4E-50 324.1 24.7 231 3-237 71-317 (317)
5 PRK10625 tas putative aldo-ket 100.0 2E-44 4.3E-49 323.6 26.0 236 3-238 78-339 (346)
6 PRK09912 L-glyceraldehyde 3-ph 100.0 3.1E-44 6.7E-49 322.1 25.7 235 3-239 88-334 (346)
7 PF00248 Aldo_ket_red: Aldo/ke 100.0 2.2E-43 4.7E-48 308.4 21.0 222 2-237 58-282 (283)
8 PRK11172 dkgB 2,5-diketo-D-glu 100.0 2E-42 4.3E-47 300.0 22.0 194 3-239 55-253 (267)
9 KOG1577 Aldo/keto reductase fa 100.0 8.1E-43 1.7E-47 298.3 18.9 201 2-241 70-288 (300)
10 cd06660 Aldo_ket_red Aldo-keto 100.0 1.3E-41 2.9E-46 297.4 24.5 213 3-236 70-285 (285)
11 PLN02587 L-galactose dehydroge 100.0 6.3E-41 1.4E-45 297.2 24.0 217 3-239 73-301 (314)
12 PRK10376 putative oxidoreducta 100.0 9.7E-41 2.1E-45 292.7 23.8 206 3-239 79-289 (290)
13 PRK11565 dkgA 2,5-diketo-D-glu 100.0 1.9E-39 4.1E-44 282.4 21.7 195 3-240 67-264 (275)
14 PRK14863 bifunctional regulato 100.0 3.1E-39 6.8E-44 283.0 18.8 207 4-236 71-280 (292)
15 COG4989 Predicted oxidoreducta 100.0 1E-38 2.2E-43 262.9 18.4 212 3-237 73-292 (298)
16 KOG1576 Predicted oxidoreducta 100.0 1.8E-34 3.8E-39 239.6 19.0 241 3-266 94-342 (342)
17 COG1453 Predicted oxidoreducta 100.0 4.7E-33 1E-37 241.1 18.4 201 2-239 73-286 (391)
18 KOG3023 Glutamate-cysteine lig 97.9 2E-05 4.4E-10 65.6 6.0 71 62-133 155-227 (285)
19 PRK10558 alpha-dehydro-beta-de 88.6 5.1 0.00011 34.5 9.8 104 68-223 9-115 (256)
20 PRK10128 2-keto-3-deoxy-L-rham 84.4 12 0.00027 32.4 10.0 103 69-224 9-115 (267)
21 PRK07535 methyltetrahydrofolat 84.1 20 0.00044 31.0 11.1 134 28-191 23-158 (261)
22 TIGR03239 GarL 2-dehydro-3-deo 83.6 12 0.00027 32.0 9.5 103 69-223 3-108 (249)
23 cd03174 DRE_TIM_metallolyase D 81.1 12 0.00026 31.9 8.7 107 25-133 14-135 (265)
24 cd00308 enolase_like Enolase-s 80.0 19 0.00041 30.2 9.4 87 48-138 120-208 (229)
25 COG1140 NarY Nitrate reductase 78.4 1.2 2.7E-05 40.1 1.6 54 75-128 263-317 (513)
26 cd03319 L-Ala-DL-Glu_epimerase 77.6 14 0.00031 32.6 8.2 73 66-138 217-291 (316)
27 TIGR02311 HpaI 2,4-dihydroxyhe 77.0 27 0.00059 29.9 9.5 102 69-223 3-108 (249)
28 cd00423 Pterin_binding Pterin 76.9 44 0.00096 28.6 10.9 104 27-136 21-130 (258)
29 PF07021 MetW: Methionine bios 75.0 19 0.0004 29.7 7.5 114 24-139 41-172 (193)
30 cd03314 MAL Methylaspartate am 74.4 48 0.001 30.2 10.8 86 50-135 229-321 (369)
31 cd03315 MLE_like Muconate lact 74.2 33 0.00072 29.3 9.5 73 66-138 169-243 (265)
32 TIGR01502 B_methylAsp_ase meth 72.8 72 0.0016 29.6 11.7 86 49-135 265-357 (408)
33 PRK13958 N-(5'-phosphoribosyl) 72.7 9.2 0.0002 31.8 5.4 67 39-107 16-83 (207)
34 PRK09613 thiH thiamine biosynt 71.8 83 0.0018 29.7 12.0 106 25-132 113-238 (469)
35 PRK09856 fructoselysine 3-epim 71.7 31 0.00066 29.5 8.7 52 116-186 93-144 (275)
36 cd03322 rpsA The starvation se 71.5 35 0.00076 30.8 9.3 71 65-135 202-274 (361)
37 PRK14461 ribosomal RNA large s 70.2 43 0.00092 30.6 9.3 86 51-137 232-352 (371)
38 COG4130 Predicted sugar epimer 67.0 25 0.00055 29.5 6.6 81 87-186 50-137 (272)
39 PRK01222 N-(5'-phosphoribosyl) 66.4 13 0.00028 30.9 5.0 67 40-108 19-86 (210)
40 cd03316 MR_like Mandelate race 65.8 40 0.00086 30.2 8.5 70 65-134 228-299 (357)
41 cd03323 D-glucarate_dehydratas 65.6 45 0.00097 30.6 8.8 72 65-136 249-322 (395)
42 cd00739 DHPS DHPS subgroup of 63.6 97 0.0021 26.7 12.8 102 27-134 21-128 (257)
43 PRK15072 bifunctional D-altron 62.8 59 0.0013 29.9 9.1 71 65-135 245-317 (404)
44 TIGR02534 mucon_cyclo muconate 62.7 56 0.0012 29.5 8.8 74 65-138 226-301 (368)
45 cd03318 MLE Muconate Lactonizi 61.9 42 0.00092 30.3 7.9 74 65-138 227-302 (365)
46 TIGR01928 menC_lowGC/arch o-su 60.8 28 0.00062 30.9 6.5 87 49-139 199-287 (324)
47 cd07944 DRE_TIM_HOA_like 4-hyd 59.9 1E+02 0.0023 26.5 9.6 106 24-132 14-128 (266)
48 TIGR00190 thiC thiamine biosyn 58.7 1.5E+02 0.0033 27.3 11.2 92 24-135 134-225 (423)
49 PRK05692 hydroxymethylglutaryl 58.5 46 0.001 29.1 7.2 105 24-131 20-138 (287)
50 cd03325 D-galactonate_dehydrat 56.6 75 0.0016 28.6 8.5 69 65-133 215-285 (352)
51 PF13378 MR_MLE_C: Enolase C-t 56.5 15 0.00033 26.8 3.4 55 83-138 2-57 (111)
52 cd03327 MR_like_2 Mandelate ra 55.2 62 0.0013 28.9 7.7 69 65-133 210-280 (341)
53 PRK14017 galactonate dehydrata 54.3 1E+02 0.0022 28.1 9.0 70 66-135 217-288 (382)
54 TIGR01927 menC_gamma/gm+ o-suc 54.2 1E+02 0.0023 27.1 8.9 86 48-139 183-270 (307)
55 PLN02746 hydroxymethylglutaryl 53.7 70 0.0015 28.9 7.7 100 25-130 63-179 (347)
56 COG1121 ZnuC ABC-type Mn/Zn tr 53.7 93 0.002 26.8 8.1 68 26-96 111-207 (254)
57 PRK14460 ribosomal RNA large s 53.6 1.4E+02 0.0029 27.1 9.6 95 42-137 210-332 (354)
58 PRK14466 ribosomal RNA large s 53.2 1.3E+02 0.0028 27.3 9.2 87 50-137 210-325 (345)
59 PRK00730 rnpA ribonuclease P; 53.2 86 0.0019 24.3 7.1 49 27-75 60-110 (138)
60 PRK04452 acetyl-CoA decarbonyl 52.8 77 0.0017 28.3 7.7 91 41-136 86-185 (319)
61 cd00740 MeTr MeTr subgroup of 51.9 1.5E+02 0.0033 25.3 12.6 108 27-138 23-131 (252)
62 PRK13352 thiamine biosynthesis 51.9 2E+02 0.0044 26.7 11.2 93 24-136 137-229 (431)
63 TIGR03217 4OH_2_O_val_ald 4-hy 51.7 1.4E+02 0.003 26.8 9.2 106 23-131 17-132 (333)
64 PRK08195 4-hyroxy-2-oxovalerat 51.3 1.2E+02 0.0027 27.2 8.9 106 23-132 18-134 (337)
65 PRK00077 eno enolase; Provisio 50.3 1.8E+02 0.004 27.0 10.1 96 27-131 261-361 (425)
66 PRK02714 O-succinylbenzoate sy 49.9 1.6E+02 0.0034 26.2 9.3 85 48-138 192-277 (320)
67 TIGR00048 radical SAM enzyme, 48.8 1.1E+02 0.0023 27.8 8.1 87 51-137 219-333 (355)
68 PRK02901 O-succinylbenzoate sy 48.7 1.4E+02 0.003 26.7 8.8 83 49-139 162-245 (327)
69 cd03317 NAAAR N-acylamino acid 48.3 75 0.0016 28.5 7.2 86 49-138 204-291 (354)
70 PRK14459 ribosomal RNA large s 48.3 1.4E+02 0.0031 27.3 8.9 89 50-138 241-360 (373)
71 PF11242 DUF2774: Protein of u 48.1 26 0.00056 23.1 2.9 23 175-197 15-37 (63)
72 PRK14456 ribosomal RNA large s 47.6 99 0.0022 28.2 7.8 88 50-137 237-353 (368)
73 PRK14463 ribosomal RNA large s 46.6 1.5E+02 0.0033 26.7 8.8 87 51-137 211-325 (349)
74 PLN00191 enolase 44.7 2.3E+02 0.005 26.7 9.9 98 27-133 295-395 (457)
75 PRK14462 ribosomal RNA large s 44.7 2.1E+02 0.0046 26.0 9.3 85 53-137 226-338 (356)
76 TIGR03822 AblA_like_2 lysine-2 43.9 2.3E+02 0.005 25.1 12.8 109 28-139 120-240 (321)
77 TIGR01496 DHPS dihydropteroate 43.7 2.1E+02 0.0046 24.5 12.4 100 27-134 20-126 (257)
78 PRK13796 GTPase YqeH; Provisio 43.5 2.5E+02 0.0055 25.4 9.9 82 4-93 97-178 (365)
79 cd03321 mandelate_racemase Man 43.2 1.3E+02 0.0029 27.0 7.9 67 65-131 225-293 (355)
80 cd04728 ThiG Thiazole synthase 43.2 2.2E+02 0.0047 24.5 14.8 74 23-97 69-143 (248)
81 COG1751 Uncharacterized conser 42.9 1.7E+02 0.0037 23.3 7.6 87 51-138 2-95 (186)
82 cd07943 DRE_TIM_HOA 4-hydroxy- 42.9 2.1E+02 0.0045 24.5 8.8 107 24-132 16-131 (263)
83 PHA02128 hypothetical protein 42.9 85 0.0018 23.2 5.3 70 63-132 60-150 (151)
84 PLN02363 phosphoribosylanthran 42.7 69 0.0015 27.6 5.7 66 41-107 64-130 (256)
85 PRK14457 ribosomal RNA large s 42.7 2.5E+02 0.0053 25.4 9.4 91 47-137 212-330 (345)
86 PF14502 HTH_41: Helix-turn-he 42.6 21 0.00046 22.3 1.8 29 174-202 7-37 (48)
87 COG2022 ThiG Uncharacterized e 42.5 1E+02 0.0023 26.2 6.4 56 23-78 76-132 (262)
88 KOG1468 Predicted translation 42.3 1.8E+02 0.0039 25.5 7.9 118 63-212 118-245 (354)
89 COG0135 TrpF Phosphoribosylant 42.1 1.1E+02 0.0023 25.6 6.5 83 40-131 18-103 (208)
90 TIGR00035 asp_race aspartate r 42.0 1.1E+02 0.0024 25.6 6.8 64 27-91 14-89 (229)
91 PF11020 DUF2610: Domain of un 41.7 68 0.0015 22.3 4.3 28 167-194 48-75 (82)
92 cd03320 OSBS o-Succinylbenzoat 41.6 1.3E+02 0.0027 25.8 7.3 73 65-138 166-239 (263)
93 TIGR02082 metH 5-methyltetrahy 41.2 4.8E+02 0.01 28.0 12.9 105 29-138 367-476 (1178)
94 cd07948 DRE_TIM_HCS Saccharomy 40.9 2E+02 0.0044 24.7 8.4 101 24-132 16-131 (262)
95 TIGR00735 hisF imidazoleglycer 40.6 1.8E+02 0.0039 24.7 8.0 89 38-129 162-253 (254)
96 PRK14453 chloramphenicol/florf 40.2 2.8E+02 0.0061 25.0 10.5 92 46-138 203-331 (347)
97 PRK09490 metH B12-dependent me 39.6 5.1E+02 0.011 27.9 12.7 92 42-138 395-492 (1229)
98 COG0422 ThiC Thiamine biosynth 39.5 3.1E+02 0.0067 25.3 9.8 93 24-136 135-227 (432)
99 COG0820 Predicted Fe-S-cluster 39.4 2.4E+02 0.0052 25.5 8.7 85 51-137 216-330 (349)
100 PRK09427 bifunctional indole-3 39.4 65 0.0014 30.3 5.4 65 40-108 273-338 (454)
101 PRK14465 ribosomal RNA large s 39.3 2.1E+02 0.0046 25.8 8.5 87 51-137 216-329 (342)
102 PRK06424 transcription factor; 39.2 1.1E+02 0.0025 23.8 5.9 30 171-200 84-113 (144)
103 COG2185 Sbm Methylmalonyl-CoA 39.1 1.9E+02 0.0041 22.6 7.0 55 81-139 20-76 (143)
104 PTZ00081 enolase; Provisional 38.7 3.4E+02 0.0073 25.5 9.9 99 27-134 281-384 (439)
105 PRK13803 bifunctional phosphor 38.2 74 0.0016 31.1 5.8 75 29-108 13-88 (610)
106 PRK14457 ribosomal RNA large s 37.4 3.1E+02 0.0068 24.7 12.6 136 3-139 99-266 (345)
107 smart00642 Aamy Alpha-amylase 37.2 60 0.0013 25.8 4.2 21 116-136 73-93 (166)
108 KOG0059 Lipid exporter ABCA1 a 36.6 2.1E+02 0.0046 29.4 9.0 73 25-99 668-769 (885)
109 TIGR01060 eno phosphopyruvate 36.5 3.5E+02 0.0077 25.1 13.5 97 27-132 262-363 (425)
110 PF00809 Pterin_bind: Pterin b 36.3 87 0.0019 25.9 5.2 90 40-135 28-125 (210)
111 cd03313 enolase Enolase: Enola 35.8 3.6E+02 0.0077 24.9 10.5 97 27-132 261-362 (408)
112 cd03329 MR_like_4 Mandelate ra 35.7 3.3E+02 0.0072 24.5 9.4 68 66-133 229-299 (368)
113 PRK03892 ribonuclease P protei 35.4 2.7E+02 0.0058 23.3 13.6 168 5-224 28-197 (216)
114 PF00682 HMGL-like: HMGL-like 35.1 1.2E+02 0.0026 25.2 6.1 97 27-129 11-124 (237)
115 PRK14464 ribosomal RNA large s 35.1 2.3E+02 0.0051 25.6 8.0 76 61-137 224-317 (344)
116 PF00072 Response_reg: Respons 35.0 1.2E+02 0.0026 21.2 5.3 67 40-108 36-103 (112)
117 PRK14455 ribosomal RNA large s 34.9 1.6E+02 0.0035 26.7 7.1 88 51-138 223-338 (356)
118 cd03324 rTSbeta_L-fuconate_deh 34.7 3.3E+02 0.0073 25.2 9.3 69 65-133 279-352 (415)
119 PF01402 RHH_1: Ribbon-helix-h 34.5 92 0.002 17.8 3.8 22 171-192 9-30 (39)
120 PRK01045 ispH 4-hydroxy-3-meth 34.4 2E+02 0.0043 25.5 7.3 109 76-219 156-276 (298)
121 PRK10200 putative racemase; Pr 33.8 2E+02 0.0042 24.2 7.1 64 27-91 14-89 (230)
122 PF05913 DUF871: Bacterial pro 33.7 54 0.0012 29.8 3.8 122 69-220 104-235 (357)
123 COG0626 MetC Cystathionine bet 33.7 2.4E+02 0.0052 26.1 8.0 82 62-143 112-196 (396)
124 PF14871 GHL6: Hypothetical gl 33.4 37 0.0008 26.1 2.3 25 112-136 43-67 (132)
125 TIGR03247 glucar-dehydr glucar 33.2 3.3E+02 0.0071 25.5 9.0 70 66-135 268-338 (441)
126 PRK05414 urocanate hydratase; 33.0 1.3E+02 0.0028 28.8 6.0 63 37-106 201-266 (556)
127 PF10171 DUF2366: Uncharacteri 32.9 99 0.0022 25.0 4.8 48 34-84 67-114 (173)
128 PRK00208 thiG thiazole synthas 32.8 3.2E+02 0.007 23.5 14.9 74 23-97 69-143 (250)
129 PRK08392 hypothetical protein; 32.5 1.7E+02 0.0037 24.1 6.4 78 45-128 86-176 (215)
130 PRK13210 putative L-xylulose 5 32.5 3.1E+02 0.0068 23.2 11.1 51 116-185 97-147 (284)
131 PF10668 Phage_terminase: Phag 32.4 1E+02 0.0022 20.2 3.9 17 175-191 24-40 (60)
132 TIGR01228 hutU urocanate hydra 32.0 1.3E+02 0.0028 28.5 5.9 63 37-106 192-257 (545)
133 COG2949 SanA Uncharacterized m 31.6 3.1E+02 0.0068 23.0 9.0 100 30-135 76-182 (235)
134 TIGR00676 fadh2 5,10-methylene 31.2 3.4E+02 0.0075 23.3 12.1 103 26-139 69-192 (272)
135 cd02930 DCR_FMN 2,4-dienoyl-Co 31.0 3.2E+02 0.0069 24.6 8.4 36 70-105 269-305 (353)
136 PRK12360 4-hydroxy-3-methylbut 31.0 3E+02 0.0066 24.1 7.8 107 76-219 157-275 (281)
137 TIGR02026 BchE magnesium-proto 31.0 4.7E+02 0.01 24.8 13.1 47 27-76 222-268 (497)
138 COG0159 TrpA Tryptophan syntha 30.5 3.6E+02 0.0078 23.4 8.1 20 116-135 137-156 (265)
139 PF02426 MIase: Muconolactone 30.3 84 0.0018 22.5 3.6 50 65-114 27-88 (91)
140 TIGR02398 gluc_glyc_Psyn gluco 30.2 3.7E+02 0.0081 25.6 8.9 102 33-139 272-394 (487)
141 PF05690 ThiG: Thiazole biosyn 30.1 1.7E+02 0.0036 25.1 5.8 55 24-78 70-125 (247)
142 COG0820 Predicted Fe-S-cluster 30.0 3.9E+02 0.0086 24.2 8.5 108 3-110 99-221 (349)
143 TIGR02660 nifV_homocitr homoci 30.0 4.1E+02 0.0088 24.0 8.9 99 24-130 17-130 (365)
144 COG1151 6Fe-6S prismane cluste 29.8 2.8E+02 0.0061 26.8 7.8 50 30-82 360-412 (576)
145 PRK02399 hypothetical protein; 29.6 1.6E+02 0.0034 27.3 6.0 48 35-90 200-247 (406)
146 PF05368 NmrA: NmrA-like famil 29.5 3.1E+02 0.0067 22.5 7.6 85 46-138 21-106 (233)
147 PF00356 LacI: Bacterial regul 29.3 70 0.0015 19.6 2.6 42 176-223 2-43 (46)
148 COG0282 ackA Acetate kinase [E 29.1 4E+02 0.0086 24.6 8.4 124 66-220 160-291 (396)
149 COG2875 CobM Precorrin-4 methy 28.5 1.5E+02 0.0032 25.3 5.2 87 46-133 74-166 (254)
150 PRK12331 oxaloacetate decarbox 28.5 3.7E+02 0.008 25.3 8.5 103 25-131 21-141 (448)
151 cd00668 Ile_Leu_Val_MetRS_core 28.4 1E+02 0.0022 27.2 4.6 49 29-80 81-131 (312)
152 TIGR03597 GTPase_YqeH ribosome 28.3 4.5E+02 0.0097 23.7 10.3 80 4-91 91-170 (360)
153 COG2102 Predicted ATPases of P 28.2 55 0.0012 27.5 2.7 99 62-188 75-177 (223)
154 PF07287 DUF1446: Protein of u 28.2 1.4E+02 0.003 27.2 5.5 40 116-186 61-100 (362)
155 COG2089 SpsE Sialic acid synth 28.1 3E+02 0.0065 24.8 7.2 60 28-91 158-219 (347)
156 PRK15440 L-rhamnonate dehydrat 28.1 1.9E+02 0.0042 26.5 6.5 68 65-132 247-318 (394)
157 PF01053 Cys_Met_Meta_PP: Cys/ 27.7 2.3E+02 0.0049 26.0 6.9 82 62-143 104-188 (386)
158 PRK14463 ribosomal RNA large s 27.6 4.6E+02 0.01 23.7 9.4 92 3-96 101-203 (349)
159 TIGR00216 ispH_lytB (E)-4-hydr 27.5 2.4E+02 0.0051 24.7 6.6 117 67-219 145-274 (280)
160 PRK04930 glutathione-regulated 27.5 3.4E+02 0.0073 22.1 7.2 34 26-59 126-159 (184)
161 cd04742 NPD_FabD 2-Nitropropan 27.4 2.4E+02 0.0051 26.3 6.8 89 39-134 6-103 (418)
162 COG4555 NatA ABC-type Na+ tran 26.9 3.4E+02 0.0074 22.9 7.0 71 25-97 103-202 (245)
163 COG1104 NifS Cysteine sulfinat 26.8 98 0.0021 28.4 4.2 107 30-136 44-181 (386)
164 PRK14470 ribosomal RNA large s 26.7 3.8E+02 0.0081 24.1 7.9 87 51-137 208-322 (336)
165 cd03328 MR_like_3 Mandelate ra 26.5 4.7E+02 0.01 23.4 9.2 69 65-133 221-293 (352)
166 COG0773 MurC UDP-N-acetylmuram 26.3 34 0.00074 32.0 1.2 28 180-207 113-141 (459)
167 COG4626 Phage terminase-like p 26.3 2.3E+02 0.005 27.3 6.6 74 60-136 410-486 (546)
168 cd00248 Mth938-like Mth938-lik 26.1 1.6E+02 0.0035 21.6 4.6 52 85-136 38-89 (109)
169 PF01175 Urocanase: Urocanase; 25.6 1.9E+02 0.0042 27.6 5.9 64 37-107 191-257 (546)
170 PRK08776 cystathionine gamma-s 25.5 5.3E+02 0.011 23.7 10.9 77 63-139 110-188 (405)
171 PF01476 LysM: LysM domain; I 25.2 74 0.0016 18.5 2.3 18 174-191 7-24 (44)
172 PRK14466 ribosomal RNA large s 24.7 4.1E+02 0.009 24.0 7.8 102 3-108 101-214 (345)
173 TIGR03070 couple_hipB transcri 24.6 84 0.0018 19.2 2.6 23 175-197 6-28 (58)
174 PF09989 DUF2229: CoA enzyme a 24.4 1.5E+02 0.0032 24.9 4.6 35 99-133 183-219 (221)
175 cd07939 DRE_TIM_NifV Streptomy 24.0 4.5E+02 0.0098 22.3 10.5 98 25-130 15-127 (259)
176 PF06792 UPF0261: Uncharacteri 23.7 2.4E+02 0.0052 26.1 6.1 39 36-80 200-238 (403)
177 TIGR01378 thi_PPkinase thiamin 23.3 1.5E+02 0.0033 24.4 4.5 40 182-221 69-110 (203)
178 cd02932 OYE_YqiM_FMN Old yello 23.1 5.1E+02 0.011 23.0 8.2 39 67-105 280-319 (336)
179 PRK06015 keto-hydroxyglutarate 23.0 1.8E+02 0.004 24.0 4.8 88 28-131 14-102 (201)
180 TIGR01163 rpe ribulose-phospha 23.0 4E+02 0.0087 21.4 7.9 99 27-130 8-108 (210)
181 PRK11267 biopolymer transport 22.8 2.2E+02 0.0047 21.9 5.0 55 26-85 80-134 (141)
182 cd00814 MetRS_core catalytic c 22.3 1.4E+02 0.0031 26.3 4.4 47 29-78 68-114 (319)
183 PF07862 Nif11: Nitrogen fixat 22.2 1.2E+02 0.0025 18.5 2.8 23 208-230 26-48 (49)
184 CHL00040 rbcL ribulose-1,5-bis 22.2 6E+02 0.013 24.1 8.6 110 25-138 178-300 (475)
185 PRK06294 coproporphyrinogen II 21.9 1.7E+02 0.0037 26.5 4.9 29 26-55 166-194 (370)
186 smart00052 EAL Putative diguan 21.9 4.4E+02 0.0094 21.4 7.2 69 63-133 133-210 (241)
187 PRK14461 ribosomal RNA large s 21.8 4.2E+02 0.009 24.3 7.2 96 3-98 105-225 (371)
188 TIGR02814 pfaD_fam PfaD family 21.7 3.4E+02 0.0073 25.5 6.8 90 39-135 11-109 (444)
189 cd00671 ArgRS_core catalytic c 21.6 2.1E+02 0.0046 23.5 5.1 46 29-79 67-112 (212)
190 PRK13753 dihydropteroate synth 21.4 5.6E+02 0.012 22.4 11.3 102 27-136 22-129 (279)
191 PRK08247 cystathionine gamma-s 21.4 5.5E+02 0.012 23.0 8.1 63 78-140 116-180 (366)
192 TIGR00677 fadh2_euk methylenet 21.3 5.5E+02 0.012 22.3 12.4 98 26-129 70-190 (281)
193 PRK11024 colicin uptake protei 21.3 2.2E+02 0.0048 21.8 4.8 53 27-84 85-137 (141)
194 TIGR01182 eda Entner-Doudoroff 21.2 4.1E+02 0.0088 22.0 6.6 88 28-131 18-106 (204)
195 PRK10508 hypothetical protein; 20.9 2.3E+02 0.005 25.4 5.4 43 27-74 286-328 (333)
196 PF00762 Ferrochelatase: Ferro 20.9 3.3E+02 0.0071 24.2 6.4 91 28-137 205-299 (316)
197 PRK08609 hypothetical protein; 20.8 6.5E+02 0.014 24.4 8.8 15 116-130 482-496 (570)
198 PRK14467 ribosomal RNA large s 20.8 6.3E+02 0.014 22.8 8.7 89 51-139 213-331 (348)
199 PLN02880 tyrosine decarboxylas 20.5 3.9E+02 0.0084 25.3 7.1 51 31-81 189-242 (490)
200 PF13407 Peripla_BP_4: Peripla 20.5 4.8E+02 0.01 21.4 7.4 53 29-87 13-65 (257)
201 TIGR01428 HAD_type_II 2-haloal 20.4 1.9E+02 0.0042 23.0 4.6 64 32-97 61-128 (198)
202 cd03770 SR_TndX_transposase Se 20.4 1.9E+02 0.0041 22.0 4.3 19 65-83 56-74 (140)
203 PF04476 DUF556: Protein of un 20.4 4E+02 0.0087 22.7 6.3 101 28-129 65-183 (235)
204 PF02679 ComA: (2R)-phospho-3- 20.3 2.2E+02 0.0048 24.4 4.9 98 33-131 24-131 (244)
205 PLN02444 HMP-P synthase 20.2 7.1E+02 0.015 24.3 8.5 89 25-135 295-383 (642)
206 PRK05968 hypothetical protein; 20.2 6.2E+02 0.013 23.0 8.3 53 87-139 137-190 (389)
No 1
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=6.1e-49 Score=347.07 Aligned_cols=233 Identities=43% Similarity=0.660 Sum_probs=210.5
Q ss_pred CCcEEEEecccccCCCCCCc-cCCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCceeeee
Q 024433 4 REKVQIATKFGVVGLRDNGV-IVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIG 82 (268)
Q Consensus 4 R~~~~I~tK~~~~~~~~~~~-~~~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iG 82 (268)
|++++|+||++....++... ..++++++|+++++.||+|||||||||||+|+||...+.++++++|.+|+++|+||++|
T Consensus 75 Rd~vvIaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~~p~~e~~~aL~~l~~~G~ir~iG 154 (316)
T COG0667 75 RDKVVIATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPETPIEETLEALDELVREGKIRYIG 154 (316)
T ss_pred CCeEEEEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeEEE
Confidence 89999999999887532112 36789999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHhCC-CCeeEecccccccccchhhhHHHHHHHhCCceeecccCCCcccCCcccccCCCCCcccccC-CC
Q 024433 83 LSEASPDTIRRAHGV-HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVPADSILHFF-PR 160 (268)
Q Consensus 83 vs~~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~vi~~~pl~~GlL~g~~~~~~~~~~~~~~~~-~~ 160 (268)
+||++.+++.++... .+++++|.+||++.+..+.+++++|+++||++++|+||++|+|+|++... ..+.+... +.
T Consensus 155 ~S~~~~~~i~~a~~~~~~~~~~Q~~ynl~~R~~e~~l~~~~~~~gi~~~~~spla~G~Ltgk~~~~---~~~~r~~~~~~ 231 (316)
T COG0667 155 VSNYSAEQIAEALAVAAPIDSLQPEYNLLERDAEKELLPLCREEGIGLLAYSPLASGLLTGKYLPG---PEGSRASELPR 231 (316)
T ss_pred ecCCCHHHHHHHHHhcCCceeecccCccccccchhHHHHHHHHcCCeEEEecCccccccCCCcCCC---cchhhcccccc
Confidence 999999999999998 69999999999999877777999999999999999999999999995443 22333333 56
Q ss_pred CCCcchhhhHHHHHHHHHHHHhcCCCHHHHHHHHHhcCCCCeeeecCCCChHHHHHHHhhcCCCCCHHHHHHHHHhCCC
Q 024433 161 YKGENLDRNKNIYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLRIKLTKEDLKEISDAVPI 239 (268)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~la~~~~~s~~qlal~~~l~~~~v~~vivg~~~~~~l~~nl~~~~~~Lt~~e~~~i~~~~~~ 239 (268)
|..+..++.......+.++|+++|.|++|+||+|++++|.|+++|+|+++++||++|+++++..|++++++.|++....
T Consensus 232 ~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~ALawvl~~~~v~~~I~Ga~~~~qL~en~~A~~~~L~~~~~~~l~~~~~~ 310 (316)
T COG0667 232 FQRELTERGLAILRALEELAKELGATPAQVALAWVLAQPGVTSPIVGASKAEQLEENLAALDIKLSEEELAALDEISAE 310 (316)
T ss_pred chhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCceEeecCCCHHHHHHHHHHhcCCCCHHHHHHHHHHhhh
Confidence 6677788899999999999999999999999999999999999999999999999999999999999999999988764
No 2
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=2.4e-47 Score=331.74 Aligned_cols=243 Identities=46% Similarity=0.683 Sum_probs=213.7
Q ss_pred CCCCcEEEEecccccCCCCCCccCCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCceeee
Q 024433 2 LPREKVQIATKFGVVGLRDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYI 81 (268)
Q Consensus 2 ~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~i 81 (268)
.+|++++|+||++..... ....+.++..+.+.++.|++|||++||||||+||+|+..+.++++++|.+++++|+|+||
T Consensus 85 ~~R~~vviaTK~~~~~~~--~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~~piee~m~aL~~lve~Gki~yi 162 (336)
T KOG1575|consen 85 WRRDKVVIATKFGFDYGG--ETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPMVPIEETMRALTDLVEQGKIRYW 162 (336)
T ss_pred CcCCcEEEEEEEeccCCC--cCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCCCCHHHHHHHHHHHHhcCceEEE
Confidence 369999999999987722 235678899999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHhCCCC--eeEecccccccccchh-hhHHHHHHHhCCceeecccCCCcccCCcccc-cCCCCCccccc
Q 024433 82 GLSEASPDTIRRAHGVHP--ITAVQMEWSLWTRDIE-EEIIPLCRELGIGIVPYSPLGRGFFGGKAVV-ESVPADSILHF 157 (268)
Q Consensus 82 Gvs~~~~~~l~~~~~~~~--~~~~q~~~n~~~~~~~-~~~~~~~~~~gi~vi~~~pl~~GlL~g~~~~-~~~~~~~~~~~ 157 (268)
|+|+++++++.++....+ +.++|++||++.+..+ .++++.|++.||++++|+||++|+|+|++.. ...+.++.+..
T Consensus 163 GlSe~sa~~I~~a~~~~~~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~G~Ltgk~~~~e~~~~~~~~~~ 242 (336)
T KOG1575|consen 163 GLSEWSAEEIREAHAVAPIPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGRGLLTGKYKLGEDSRNGDKRFQ 242 (336)
T ss_pred EeccCCHHHHHHHHHhcCCCceEeeeechhhhcchhhhhHHHHHHHcCcceEEecccccceeccCccccccccccccccc
Confidence 999999999999988866 9999999999999854 5699999999999999999999999999433 33444333321
Q ss_pred C----CCCCCcchhhhHHHHHHHHHHHHhcCCCHHHHHHHHHhcCCCCeeeecCCCChHHHHHHHhhcCCCCCHHHHHHH
Q 024433 158 F----PRYKGENLDRNKNIYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLRIKLTKEDLKEI 233 (268)
Q Consensus 158 ~----~~~~~~~~~~~~~~~~~l~~la~~~~~s~~qlal~~~l~~~~v~~vivg~~~~~~l~~nl~~~~~~Lt~~e~~~i 233 (268)
. +.+... +..+...+++.++|+++|+|++|+||+|+++++.|+++|||+++++||.+|+++++..||++++.+|
T Consensus 243 ~~~~~~~~~~~--~~~~~~~~~~~~iA~k~g~T~~qlALawv~~~~~v~~pIpG~s~ve~l~eni~Al~~~Lt~e~~~~l 320 (336)
T KOG1575|consen 243 FLGLSPQTEEG--DKQKPILEALSKIAEKHGCTVPQLALAWVLSNGKVSSPIPGASKIEQLKENIGALSVKLTPEEIKEL 320 (336)
T ss_pred ccccccccchh--hhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCEEecCCCCcHHHHHHHHhhhhccCCHHHHHHH
Confidence 1 222222 5677889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCccCCCCCc
Q 024433 234 SDAVPIEEVAGDRDP 248 (268)
Q Consensus 234 ~~~~~~~~~~~~~~~ 248 (268)
+++.+.....+++|.
T Consensus 321 ~~~~~~~~~~~~~~~ 335 (336)
T KOG1575|consen 321 EEIIDKILGFGPRSI 335 (336)
T ss_pred HHhhccccCcCCCCC
Confidence 999998888777764
No 3
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=2.1e-47 Score=326.33 Aligned_cols=196 Identities=33% Similarity=0.498 Sum_probs=177.4
Q ss_pred CCCCcEEEEecccccCCCCCCccCCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCC--CCHHHHHHHHHHHHHcCcee
Q 024433 2 LPREKVQIATKFGVVGLRDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS--VPIEETIGEMKKLVEEGKIK 79 (268)
Q Consensus 2 ~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~p~~~--~~~~~~~~~l~~l~~~G~ir 79 (268)
.+|+++||+||++... ++.+...+++++||++||+||+|||+||||.+. ..+.++|++||+++++|+||
T Consensus 66 v~ReelFittKvw~~~---------~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~~~~~~~etw~alE~l~~~G~ir 136 (280)
T COG0656 66 VPREELFITTKVWPSD---------LGYDETLKALEASLKRLGLDYVDLYLIHWPVPNKYVVIEETWKALEELVDEGLIR 136 (280)
T ss_pred CCHHHeEEEeecCCcc---------CCcchHHHHHHHHHHHhCCCceeEEEECCCCCccCccHHHHHHHHHHHHhcCCcc
Confidence 3799999999998654 457889999999999999999999999999763 23689999999999999999
Q ss_pred eeecCCCCHHHHHHHhCC--CCeeEecccccccccchhhhHHHHHHHhCCceeecccCCCcc-cCCcccccCCCCCcccc
Q 024433 80 YIGLSEASPDTIRRAHGV--HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGF-FGGKAVVESVPADSILH 156 (268)
Q Consensus 80 ~iGvs~~~~~~l~~~~~~--~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~vi~~~pl~~Gl-L~g~~~~~~~~~~~~~~ 156 (268)
+||||||+..+++++++. ..++++|++||++.++. +++++|+++||.+++|+||++|. +...
T Consensus 137 ~IGVSNF~~~~L~~l~~~~~~~p~~NQIe~hp~~~q~--el~~~~~~~gI~v~AysPL~~g~~l~~~------------- 201 (280)
T COG0656 137 AIGVSNFGVEHLEELLSLAKVKPAVNQIEYHPYLRQP--ELLPFCQRHGIAVEAYSPLAKGGKLLDN------------- 201 (280)
T ss_pred EEEeeCCCHHHHHHHHHhcCCCCceEEEEeccCCCcH--HHHHHHHHcCCEEEEECCcccccccccC-------------
Confidence 999999999999998876 45899999999999974 59999999999999999999653 2211
Q ss_pred cCCCCCCcchhhhHHHHHHHHHHHHhcCCCHHHHHHHHHhcCCCCeeeecCCCChHHHHHHHhhcCCCCCHHHHHHHHHh
Q 024433 157 FFPRYKGENLDRNKNIYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLRIKLTKEDLKEISDA 236 (268)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~qlal~~~l~~~~v~~vivg~~~~~~l~~nl~~~~~~Lt~~e~~~i~~~ 236 (268)
+.+.+||++||.|++|++|+|+++++. ++||++++++|+.+|++++++.||++||+.|+++
T Consensus 202 -----------------~~l~~Ia~k~g~t~AQv~L~W~i~~gv--~~Ipks~~~~ri~eN~~~~~f~Ls~ed~~~i~~l 262 (280)
T COG0656 202 -----------------PVLAEIAKKYGKTPAQVALRWHIQRGV--IVIPKSTTPERIRENLAAFDFELSEEDMAAIDAL 262 (280)
T ss_pred -----------------hHHHHHHHHhCCCHHHHHHHHHHhCCc--EEecCCCCHHHHHHHHhhhcCCCCHHHHHHHHhh
Confidence 389999999999999999999999996 9999999999999999999999999999999999
Q ss_pred CCCC
Q 024433 237 VPIE 240 (268)
Q Consensus 237 ~~~~ 240 (268)
....
T Consensus 263 ~~~~ 266 (280)
T COG0656 263 DRGY 266 (280)
T ss_pred cccc
Confidence 8864
No 4
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=4.3e-45 Score=324.13 Aligned_cols=231 Identities=28% Similarity=0.414 Sum_probs=191.2
Q ss_pred CCCcEEEEecccccCCCCCCccCCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCceeeee
Q 024433 3 PREKVQIATKFGVVGLRDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIG 82 (268)
Q Consensus 3 ~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iG 82 (268)
+|++++|+||+++.... ....+++++.++++|++||+|||+||||+|++|+|++..+.+++|++|++|+++|+||+||
T Consensus 71 ~R~~~~iaTK~~~~~~~--~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~~~~~e~~~aL~~l~~~G~ir~iG 148 (317)
T TIGR01293 71 RRSSYVITTKIFWGGKA--ETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPNTPMEETVRAMTYVINQGMAMYWG 148 (317)
T ss_pred CcccEEEEeeeccCCCC--CCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCCCCHHHHHHHHHHHHHcCCeeEEE
Confidence 59999999998643211 1124568999999999999999999999999999998888999999999999999999999
Q ss_pred cCCCCHHHHHHHhCC------CCeeEecccccccccch-hhhHHHHHHHhCCceeecccCCCcccCCcccccCCCCCccc
Q 024433 83 LSEASPDTIRRAHGV------HPITAVQMEWSLWTRDI-EEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVPADSIL 155 (268)
Q Consensus 83 vs~~~~~~l~~~~~~------~~~~~~q~~~n~~~~~~-~~~~~~~~~~~gi~vi~~~pl~~GlL~g~~~~~~~~~~~~~ 155 (268)
||||+.+++.++... .+++++|++||++.+.. +.+++++|+++||++++|+||++|+|+|++... ++.+. +
T Consensus 149 vSn~~~~~l~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~G~Ltg~~~~~-~~~~~-~ 226 (317)
T TIGR01293 149 TSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLACGLVSGKYDSG-IPPYS-R 226 (317)
T ss_pred ecCCCHHHHHHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccccccCCCCCCC-CCCcc-c
Confidence 999999998775432 46889999999999873 568999999999999999999999999985332 23222 1
Q ss_pred ccCCC---CC----CcchhhhHHHHHHHHHHHHhcCCCHHHHHHHHHhcCCCCeeeecCCCChHHHHHHHhhcCC--CCC
Q 024433 156 HFFPR---YK----GENLDRNKNIYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLRI--KLT 226 (268)
Q Consensus 156 ~~~~~---~~----~~~~~~~~~~~~~l~~la~~~~~s~~qlal~~~l~~~~v~~vivg~~~~~~l~~nl~~~~~--~Lt 226 (268)
...+. +. ...........+.+.++|+++|+|++|+||+|++++|.|+++|+|+++++|+++|++++++ +|+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlal~w~l~~~~v~~~i~G~~~~~ql~en~~a~~~~~~Ls 306 (317)
T TIGR01293 227 ATLKGYQWLKDKILSEEGRRQQARLKDLQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASSAEQLMENLGSLQVLPKLS 306 (317)
T ss_pred ccccccchhhhhhcchhhHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHHHhhccCCCC
Confidence 11111 11 1122234566788999999999999999999999999999999999999999999999987 999
Q ss_pred HHHHHHHHHhC
Q 024433 227 KEDLKEISDAV 237 (268)
Q Consensus 227 ~~e~~~i~~~~ 237 (268)
++++++|++++
T Consensus 307 ~e~~~~l~~~~ 317 (317)
T TIGR01293 307 SSIIHEIDSIL 317 (317)
T ss_pred HHHHHHHHhhC
Confidence 99999999763
No 5
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=2e-44 Score=323.57 Aligned_cols=236 Identities=28% Similarity=0.382 Sum_probs=191.7
Q ss_pred CCCcEEEEecccccCCCCCC---ccCCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCC-----------------CCCH
Q 024433 3 PREKVQIATKFGVVGLRDNG---VIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDT-----------------SVPI 62 (268)
Q Consensus 3 ~R~~~~I~tK~~~~~~~~~~---~~~~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~p~~-----------------~~~~ 62 (268)
+|++++|+||++........ ...+++++.+++++++||+|||+||||||++|||+. ..++
T Consensus 78 ~R~~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~ 157 (346)
T PRK10625 78 SREKLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSL 157 (346)
T ss_pred CcceEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCcccccccccccccccccCCCCH
Confidence 58999999998642210000 013578999999999999999999999999999964 2357
Q ss_pred HHHHHHHHHHHHcCceeeeecCCCCHHHHHHHhC------CCCeeEecccccccccchhhhHHHHHHHhCCceeecccCC
Q 024433 63 EETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHG------VHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLG 136 (268)
Q Consensus 63 ~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~------~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~vi~~~pl~ 136 (268)
.++|++|++|+++|+||+||+|||+..++.+++. ...++++|++||++++..+.+++++|+++||++++|+||+
T Consensus 158 ~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~~ll~~~~~~gi~via~spL~ 237 (346)
T PRK10625 158 LETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCLA 237 (346)
T ss_pred HHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchhHHHHHHHHcCCeEEEecccc
Confidence 8999999999999999999999999988876543 2357899999999998766789999999999999999999
Q ss_pred CcccCCcccccCCCCCcccccCCCCCCcchhhhHHHHHHHHHHHHhcCCCHHHHHHHHHhcCCCCeeeecCCCChHHHHH
Q 024433 137 RGFFGGKAVVESVPADSILHFFPRYKGENLDRNKNIYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDD 216 (268)
Q Consensus 137 ~GlL~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~qlal~~~l~~~~v~~vivg~~~~~~l~~ 216 (268)
+|+|+|++.....+.+........|.....+..+...+.+.++|+++|+|++|+||+|++++|.|+++|+|+++++||++
T Consensus 238 ~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~t~aqval~w~l~~~~v~~~I~G~~~~~~l~e 317 (346)
T PRK10625 238 FGTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIAKRHGLDPAQMALAFVRRQPFVASTLLGATTMEQLKT 317 (346)
T ss_pred CeeccCCCCCCCCCCCcccccccccccccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEeCCCCHHHHHH
Confidence 99999985333222211100011122212244566788999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCHHHHHHHHHhCC
Q 024433 217 NIDSLRIKLTKEDLKEISDAVP 238 (268)
Q Consensus 217 nl~~~~~~Lt~~e~~~i~~~~~ 238 (268)
|+++++++|+++++++|+++.+
T Consensus 318 n~~a~~~~L~~~~~~~l~~~~~ 339 (346)
T PRK10625 318 NIESLHLTLSEEVLAEIEAVHQ 339 (346)
T ss_pred HHhhccCCCCHHHHHHHHHHHh
Confidence 9999999999999999999865
No 6
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=3.1e-44 Score=322.05 Aligned_cols=235 Identities=26% Similarity=0.491 Sum_probs=192.3
Q ss_pred CCCcEEEEecccccCCCCCCccCCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCceeeee
Q 024433 3 PREKVQIATKFGVVGLRDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIG 82 (268)
Q Consensus 3 ~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iG 82 (268)
+|+++||+||+|....++ ....+.+++.+++++++||+|||+||||+|++|+|+...+.++++++|++|+++|+||+||
T Consensus 88 ~Rd~~~I~TK~g~~~~~~-~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~GkIr~iG 166 (346)
T PRK09912 88 YRDELIISTKAGYDMWPG-PYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKALYVG 166 (346)
T ss_pred CCCeEEEEEEecccCCCC-cCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeEEE
Confidence 599999999998532111 1123468999999999999999999999999999998888999999999999999999999
Q ss_pred cCCCCHHHHHHHhC-----CCCeeEecccccccccchh-hhHHHHHHHhCCceeecccCCCcccCCcccccCCCCCcccc
Q 024433 83 LSEASPDTIRRAHG-----VHPITAVQMEWSLWTRDIE-EEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVPADSILH 156 (268)
Q Consensus 83 vs~~~~~~l~~~~~-----~~~~~~~q~~~n~~~~~~~-~~~~~~~~~~gi~vi~~~pl~~GlL~g~~~~~~~~~~~~~~ 156 (268)
||||+++++.++.+ ..+++++|++||++++..+ .+++++|+++||++++|+||++|+|++++... .|.+....
T Consensus 167 vSn~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~G~Lt~~~~~~-~~~~~~~~ 245 (346)
T PRK09912 167 ISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLTGKYLNG-IPQDSRMH 245 (346)
T ss_pred ecCCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcCccccCCCCCC-CCCCcccc
Confidence 99999998875543 2467899999999998644 57999999999999999999999999984322 12111000
Q ss_pred c----CCCCCCcch-hhhHHHHHHHHHHHHhcCCCHHHHHHHHHhcCCCCeeeecCCCChHHHHHHHhhc-CCCCCHHHH
Q 024433 157 F----FPRYKGENL-DRNKNIYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSL-RIKLTKEDL 230 (268)
Q Consensus 157 ~----~~~~~~~~~-~~~~~~~~~l~~la~~~~~s~~qlal~~~l~~~~v~~vivg~~~~~~l~~nl~~~-~~~Lt~~e~ 230 (268)
. .+.|.+... +..+...+.+.++|+++|+|++|+||+|++++|.|.++|+|+++++||++|++++ +++|+++++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~AL~w~l~~~~v~~~i~G~~~~~ql~en~~a~~~~~L~~e~~ 325 (346)
T PRK09912 246 REGNKVRGLTPKMLTEANLNSLRLLNEMAQQRGQSMAQMALSWLLKDERVTSVLIGASRAEQLEENVQALNNLTFSTEEL 325 (346)
T ss_pred ccccchhhhchhhccHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHhhhcCCCCCHHHH
Confidence 0 011221111 3445667899999999999999999999999999999999999999999999998 589999999
Q ss_pred HHHHHhCCC
Q 024433 231 KEISDAVPI 239 (268)
Q Consensus 231 ~~i~~~~~~ 239 (268)
++|+++.+.
T Consensus 326 ~~l~~~~~~ 334 (346)
T PRK09912 326 AQIDQHIAD 334 (346)
T ss_pred HHHHHhhCc
Confidence 999998754
No 7
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=2.2e-43 Score=308.43 Aligned_cols=222 Identities=36% Similarity=0.562 Sum_probs=185.3
Q ss_pred CCCCcEEEEecccccCCCCCCccCCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCC-HHHHHHHHHHHHHcCceee
Q 024433 2 LPREKVQIATKFGVVGLRDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVP-IEETIGEMKKLVEEGKIKY 80 (268)
Q Consensus 2 ~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~p~~~~~-~~~~~~~l~~l~~~G~ir~ 80 (268)
.+|++++|+||+.... ....+++++.+++++++||++||+||||+|+||+|+.... ..++|++|++++++|+||+
T Consensus 58 ~~r~~~~i~tK~~~~~----~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~l~~l~~~G~ir~ 133 (283)
T PF00248_consen 58 VPRDDIFISTKVYGDG----KPEPDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSEDALEEVWEALEELKKEGKIRH 133 (283)
T ss_dssp STGGGSEEEEEEESSS----STGGGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSSHHHHHHHHHHHHHHTTSEEE
T ss_pred cccccccccccccccc----cccccccccccccccccccccccccchhccccccccccccccchhhhhhhhccccccccc
Confidence 4799999999992221 2356789999999999999999999999999999998888 8999999999999999999
Q ss_pred eecCCCCHHHHHHH--hCCCCeeEecccccccccchhhhHHHHHHHhCCceeecccCCCcccCCcccccCCCCCcccccC
Q 024433 81 IGLSEASPDTIRRA--HGVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVPADSILHFF 158 (268)
Q Consensus 81 iGvs~~~~~~l~~~--~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~vi~~~pl~~GlL~g~~~~~~~~~~~~~~~~ 158 (268)
||||||+++.+.++ ....+|+++|+.||++++....+++++|+++||++++|+||++|+|+++......+...
T Consensus 134 iGvs~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~~l~~G~l~~~~~~~~~~~~~----- 208 (283)
T PF00248_consen 134 IGVSNFSPEQLEAALKIGSIPPDVVQINYNLLNRREEEGLLEFCREHGIGVIAYSPLAGGLLTGKYKSPPPPPSR----- 208 (283)
T ss_dssp EEEES--HHHHHHHHTCTSS-ESEEEEE-BTTBHBGGHHHHHHHHHTT-EEEEESTTGGGCGGTTTTTTTTSTTT-----
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCccccccccCCCcccc-----
Confidence 99999999999998 55678999999999997777799999999999999999999999999883322111100
Q ss_pred CCCCCcchhhhHHHHHHHHHHHHhcCCCHHHHHHHHHhcCCCCeeeecCCCChHHHHHHHhhcCCCCCHHHHHHHHHhC
Q 024433 159 PRYKGENLDRNKNIYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLRIKLTKEDLKEISDAV 237 (268)
Q Consensus 159 ~~~~~~~~~~~~~~~~~l~~la~~~~~s~~qlal~~~l~~~~v~~vivg~~~~~~l~~nl~~~~~~Lt~~e~~~i~~~~ 237 (268)
............+.++++++|+|++|+||+|+++++.+.+||+|+++++|+.+|+++++++||++++++|+++.
T Consensus 209 -----~~~~~~~~~~~~l~~~a~~~g~s~~q~al~~~l~~~~~~~~i~g~~~~~~l~en~~a~~~~L~~~~~~~i~~~~ 282 (283)
T PF00248_consen 209 -----ASLRDAQELADALRELAEEHGVSPAQLALRWVLSHPGVASVIVGASSPEHLEENLAALDFPLTEEELAEIDQIL 282 (283)
T ss_dssp -----SGSSTHGGGHHHHHHHHHHHTSSHHHHHHHHHHTSHTTEEEEEB-SSHHHHHHHHGGSSSG--HHHHHHHHTTH
T ss_pred -----cccchhhhhhhhhhhhhhhcccccchhhhhhhhhccccccccCCCCCHHHHHHHHHHhCCCCCHHHHHHHHhhh
Confidence 00001345667999999999999999999999999999999999999999999999999999999999999874
No 8
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=2e-42 Score=300.04 Aligned_cols=194 Identities=27% Similarity=0.397 Sum_probs=174.0
Q ss_pred CCCcEEEEecccccCCCCCCccCCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCC--CCHHHHHHHHHHHHHcCceee
Q 024433 3 PREKVQIATKFGVVGLRDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS--VPIEETIGEMKKLVEEGKIKY 80 (268)
Q Consensus 3 ~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~p~~~--~~~~~~~~~l~~l~~~G~ir~ 80 (268)
+|+++||+||++.. +++++.+++++++||+|||+||||+|++|+|++. .+..++|++|++++++||||+
T Consensus 55 ~R~~v~i~TK~~~~---------~~~~~~~~~~~~~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~ 125 (267)
T PRK11172 55 PRDELFITTKIWID---------NLAKDKLIPSLKESLQKLRTDYVDLTLIHWPSPNDEVSVEEFMQALLEAKKQGLTRE 125 (267)
T ss_pred ChhHeEEEEEeCCC---------CCCHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHHCCCCCE
Confidence 59999999998532 2568999999999999999999999999999763 467899999999999999999
Q ss_pred eecCCCCHHHHHHHhCC---CCeeEecccccccccchhhhHHHHHHHhCCceeecccCCCcccCCcccccCCCCCccccc
Q 024433 81 IGLSEASPDTIRRAHGV---HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVPADSILHF 157 (268)
Q Consensus 81 iGvs~~~~~~l~~~~~~---~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~vi~~~pl~~GlL~g~~~~~~~~~~~~~~~ 157 (268)
||||||+.+++.++++. .+++++|++||++++. .+++++|+++||++++|+||++|.+.+.
T Consensus 126 iGvSn~~~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~--~~ll~~~~~~gi~v~a~spl~~G~~~~~-------------- 189 (267)
T PRK11172 126 IGISNFTIALMKQAIAAVGAENIATNQIELSPYLQN--RKVVAFAKEHGIHVTSYMTLAYGKVLKD-------------- 189 (267)
T ss_pred EEEccCCHHHHHHHHHhcCCCCCeEEeeecCCCCCc--HHHHHHHHHCCCEEEEECCCCCCcccCC--------------
Confidence 99999999999887654 3689999999999874 6899999999999999999999854321
Q ss_pred CCCCCCcchhhhHHHHHHHHHHHHhcCCCHHHHHHHHHhcCCCCeeeecCCCChHHHHHHHhhcCCCCCHHHHHHHHHhC
Q 024433 158 FPRYKGENLDRNKNIYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLRIKLTKEDLKEISDAV 237 (268)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~qlal~~~l~~~~v~~vivg~~~~~~l~~nl~~~~~~Lt~~e~~~i~~~~ 237 (268)
+.+.++|+++|+|++|+||+|+++++. ++|+|+++++|+++|+++++++||++++++|+++.
T Consensus 190 ----------------~~l~~~a~~~~~s~aqval~w~l~~~~--~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~i~~~~ 251 (267)
T PRK11172 190 ----------------PVIARIAAKHNATPAQVILAWAMQLGY--SVIPSSTKRENLASNLLAQDLQLDAEDMAAIAALD 251 (267)
T ss_pred ----------------HHHHHHHHHhCCCHHHHHHHHHHhCCC--EeecCCCCHHHHHHHHhhcCCCcCHHHHHHHhhhc
Confidence 268999999999999999999999985 79999999999999999999999999999999997
Q ss_pred CC
Q 024433 238 PI 239 (268)
Q Consensus 238 ~~ 239 (268)
.+
T Consensus 252 ~~ 253 (267)
T PRK11172 252 RN 253 (267)
T ss_pred cC
Confidence 54
No 9
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=8.1e-43 Score=298.30 Aligned_cols=201 Identities=30% Similarity=0.457 Sum_probs=178.2
Q ss_pred CCCCcEEEEecccccCCCCCCccCCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCC----------------CCHHHH
Q 024433 2 LPREKVQIATKFGVVGLRDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS----------------VPIEET 65 (268)
Q Consensus 2 ~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~p~~~----------------~~~~~~ 65 (268)
.+|+++||+||++... +.++.++.++++||++||+||+|+|++|||-.. .+..++
T Consensus 70 v~RediFiTSKlw~~~---------~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~~~~~~~~~~~~~~~~~~~~t 140 (300)
T KOG1577|consen 70 VKREDIFITSKLWPTD---------HAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKDSFPKDENGKVNYDDVDRIET 140 (300)
T ss_pred cchhhheeeeccCccc---------cChhhHHHHHHHHHHHhChhhhheeeEecccccCCCCCcccccccccccchHHHH
Confidence 3799999999998653 468899999999999999999999999999543 236689
Q ss_pred HHHHHHHHHcCceeeeecCCCCHHHHHHHhCC--CCeeEecccccccccchhhhHHHHHHHhCCceeecccCCCcccCCc
Q 024433 66 IGEMKKLVEEGKIKYIGLSEASPDTIRRAHGV--HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGK 143 (268)
Q Consensus 66 ~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~--~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~vi~~~pl~~GlL~g~ 143 (268)
|++||++++.|++|+||||||+..++++++.. .+|.++|+++|++.++ .+++++|+++||.|.+|+||+++-- +.
T Consensus 141 W~amE~~~~~Gl~rsIGVSNF~~~~le~ll~~~ki~P~vnQvE~HP~~~Q--~~L~~fCk~~~I~v~AYSpLg~~~~-~~ 217 (300)
T KOG1577|consen 141 WKAMEKLVDEGLVRSIGVSNFNIKQLEELLNLAKIKPAVNQVECHPYLQQ--KKLVEFCKSKGIVVTAYSPLGSPGR-GS 217 (300)
T ss_pred HHHHHHHHHcCCceEeeeecCCHHHHHHHHhcCCCCCccceeeccCCcCh--HHHHHHHhhCCcEEEEecCCCCCCC-cc
Confidence 99999999999999999999999999999886 6799999999998875 6899999999999999999997621 00
Q ss_pred ccccCCCCCcccccCCCCCCcchhhhHHHHHHHHHHHHhcCCCHHHHHHHHHhcCCCCeeeecCCCChHHHHHHHhhcCC
Q 024433 144 AVVESVPADSILHFFPRYKGENLDRNKNIYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLRI 223 (268)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~qlal~~~l~~~~v~~vivg~~~~~~l~~nl~~~~~ 223 (268)
+ +-.-+.+.+||++||+|++|++|||+++++. +|||.++|+++|.+|+++++|
T Consensus 218 ---------------~----------ll~~~~l~~iA~K~~kt~aQIlLrw~~q~g~--~vipKS~~~~Ri~eN~~vfdf 270 (300)
T KOG1577|consen 218 ---------------D----------LLEDPVLKEIAKKYNKTPAQILLRWALQRGV--SVIPKSSNPERIKENFKVFDF 270 (300)
T ss_pred ---------------c----------cccCHHHHHHHHHhCCCHHHHHHHHHHhCCc--EEEeccCCHHHHHHHHhhccc
Confidence 0 0011489999999999999999999999999 999999999999999999999
Q ss_pred CCCHHHHHHHHHhCCCCc
Q 024433 224 KLTKEDLKEISDAVPIEE 241 (268)
Q Consensus 224 ~Lt~~e~~~i~~~~~~~~ 241 (268)
.||++||+.|+....+.+
T Consensus 271 ~Lt~ed~~~i~~~~~~~r 288 (300)
T KOG1577|consen 271 ELTEEDMKKLDSLNSNER 288 (300)
T ss_pred cCCHHHHHHHhhccccce
Confidence 999999999998877654
No 10
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=1.3e-41 Score=297.38 Aligned_cols=213 Identities=39% Similarity=0.638 Sum_probs=188.2
Q ss_pred CCCcEEEEecccccCCCCCCccCCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCC-HHHHHHHHHHHHHcCceeee
Q 024433 3 PREKVQIATKFGVVGLRDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVP-IEETIGEMKKLVEEGKIKYI 81 (268)
Q Consensus 3 ~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~p~~~~~-~~~~~~~l~~l~~~G~ir~i 81 (268)
.|++++|+||++..... .++++++.+++++++||++||+||||+|+||+|+.... ..++|++|++++++|+||+|
T Consensus 70 ~R~~~~i~tK~~~~~~~----~~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~~G~ir~i 145 (285)
T cd06660 70 PREEVFIATKVGPRPGD----GRDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDTPDIEETLRALEELVKEGKIRAI 145 (285)
T ss_pred CcCcEEEEeeecCCCCC----CCCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCCCHHHHHHHHHHHHHcCCccEE
Confidence 39999999999865421 25678999999999999999999999999999987765 88999999999999999999
Q ss_pred ecCCCCHHHHHHHhCC--CCeeEecccccccccchhhhHHHHHHHhCCceeecccCCCcccCCcccccCCCCCcccccCC
Q 024433 82 GLSEASPDTIRRAHGV--HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVPADSILHFFP 159 (268)
Q Consensus 82 Gvs~~~~~~l~~~~~~--~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~vi~~~pl~~GlL~g~~~~~~~~~~~~~~~~~ 159 (268)
|||+|+++.+.+++.. .+|+++|++||++++....+++++|+++||++++|+||++|.++++........
T Consensus 146 GvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~~l~~g~l~~~~~~~~~~~-------- 217 (285)
T cd06660 146 GVSNFSAEQLEEALAAAGVPPAVNQVEYNLLDRQAEEELLPYCREHGIGVIAYSPLAGGLLTGKYLPGAPPP-------- 217 (285)
T ss_pred EeeCCCHHHHHHHHHhhCCCceEEecccCcccCchHHHHHHHHHHcCcEEEEeccccCceecCCCCCCCCCC--------
Confidence 9999999999999887 899999999999999865689999999999999999999999887632111100
Q ss_pred CCCCcchhhhHHHHHHHHHHHHhcCCCHHHHHHHHHhcCCCCeeeecCCCChHHHHHHHhhcCCCCCHHHHHHHHHh
Q 024433 160 RYKGENLDRNKNIYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLRIKLTKEDLKEISDA 236 (268)
Q Consensus 160 ~~~~~~~~~~~~~~~~l~~la~~~~~s~~qlal~~~l~~~~v~~vivg~~~~~~l~~nl~~~~~~Lt~~e~~~i~~~ 236 (268)
. ......+..++.+++.+++|+|++|++++|.++++|+|+++++|+++|+++++++|++++++.|+++
T Consensus 218 ---~------~~~~~~~~~~~~~~~~s~~q~al~~~l~~p~~~~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~l~~~ 285 (285)
T cd06660 218 ---E------GDLLEALKEIAEKHGVTPAQVALRWLLQQPGVTSVIPGASSPERLEENLAALDFELSDEDLAALDAL 285 (285)
T ss_pred ---h------hhHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHhhccCCCCHHHHHHHhhC
Confidence 0 1145689999999999999999999999999999999999999999999999999999999999763
No 11
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=6.3e-41 Score=297.18 Aligned_cols=217 Identities=23% Similarity=0.374 Sum_probs=181.3
Q ss_pred CCCcEEEEecccccCCCCCCccCCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCC---CCHHHHHHHHHHHHHcCcee
Q 024433 3 PREKVQIATKFGVVGLRDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS---VPIEETIGEMKKLVEEGKIK 79 (268)
Q Consensus 3 ~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~p~~~---~~~~~~~~~l~~l~~~G~ir 79 (268)
+|+++||+||++.... ..+++++.+++++++||++||+||||+|+||+|+.. ..+.++|++|++++++||||
T Consensus 73 ~R~~v~I~TK~~~~~~-----~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~Gkir 147 (314)
T PLN02587 73 PREKYVVSTKCGRYGE-----GFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSLDQIVNETIPALQKLKESGKVR 147 (314)
T ss_pred CcceEEEEeccccCCC-----CCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcchhhhHHHHHHHHHHHHHCCCeE
Confidence 5999999999985321 135689999999999999999999999999999643 24578999999999999999
Q ss_pred eeecCCCCHHHHHHHhCC---C--CeeEecccccccccchhhhHHHHHHHhCCceeecccCCCcccCCcccccCCCCCcc
Q 024433 80 YIGLSEASPDTIRRAHGV---H--PITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVPADSI 154 (268)
Q Consensus 80 ~iGvs~~~~~~l~~~~~~---~--~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~vi~~~pl~~GlL~g~~~~~~~~~~~~ 154 (268)
+||+|||+++++..+... . .+..+|+.||++++.. .+++++|+++||++++|+||++|+|+++..+.
T Consensus 148 ~iGvSn~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ll~~~~~~gi~v~a~spl~~G~L~~~~~~~------- 219 (314)
T PLN02587 148 FIGITGLPLAIFTYVLDRVPPGTVDVILSYCHYSLNDSSL-EDLLPYLKSKGVGVISASPLAMGLLTENGPPE------- 219 (314)
T ss_pred EEEecCCCHHHHHHHHHhhhcCCCCeEEeccccCcchhhH-HHHHHHHHHcCceEEEechhhccccCCCCCCC-------
Confidence 999999999887766542 2 3444678899877643 58999999999999999999999999873110
Q ss_pred cccCCCCCCcchhhhHHHHHHHHHHHHhcCCCHHHHHHHHHhcCCCCeeeecCCCChHHHHHHHhhcC----CCCCHHHH
Q 024433 155 LHFFPRYKGENLDRNKNIYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLR----IKLTKEDL 230 (268)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~qlal~~~l~~~~v~~vivg~~~~~~l~~nl~~~~----~~Lt~~e~ 230 (268)
+.. ..+......+.+.++|+++|+|++|+||+|++++|.|++||+|+++++|+++|+++++ .+|+++++
T Consensus 220 ------~~~-~~~~~~~~~~~l~~~a~~~~~s~aq~al~~~l~~~~v~~~i~G~~~~~~l~~nl~a~~~~~~~~l~~~~~ 292 (314)
T PLN02587 220 ------WHP-APPELKSACAAAATHCKEKGKNISKLALQYSLSNKDISTTLVGMNSVQQVEENVAAATELETSGIDEELL 292 (314)
T ss_pred ------CCC-CCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEecCCCHHHHHHHHHHHhhcccCCCCHHHH
Confidence 111 1234556778899999999999999999999999999999999999999999999975 37999999
Q ss_pred HHHHHhCCC
Q 024433 231 KEISDAVPI 239 (268)
Q Consensus 231 ~~i~~~~~~ 239 (268)
++|+++...
T Consensus 293 ~~l~~~~~~ 301 (314)
T PLN02587 293 SEVEAILAP 301 (314)
T ss_pred HHHHHhhcc
Confidence 999998753
No 12
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=9.7e-41 Score=292.74 Aligned_cols=206 Identities=26% Similarity=0.411 Sum_probs=178.0
Q ss_pred CCCcEEEEecccccCCCCCCccCCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCC-----CCCHHHHHHHHHHHHHcCc
Q 024433 3 PREKVQIATKFGVVGLRDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDT-----SVPIEETIGEMKKLVEEGK 77 (268)
Q Consensus 3 ~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~p~~-----~~~~~~~~~~l~~l~~~G~ 77 (268)
.|++++|+||+|........+..+++++.+++++++||+|||+||||+|++|+++. .....++|++|++|+++||
T Consensus 79 ~R~~~~i~TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~p~~~~~~~~~~~l~~l~~~Gk 158 (290)
T PRK10376 79 YPDDLTIVTKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHGPAEGSIEEPLTVLAELQRQGL 158 (290)
T ss_pred CCCeEEEEeeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCCCCCCHHHHHHHHHHHHHCCc
Confidence 49999999999864322112235678999999999999999999999999887421 2347899999999999999
Q ss_pred eeeeecCCCCHHHHHHHhCCCCeeEecccccccccchhhhHHHHHHHhCCceeecccCCCcccCCcccccCCCCCccccc
Q 024433 78 IKYIGLSEASPDTIRRAHGVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVPADSILHF 157 (268)
Q Consensus 78 ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~vi~~~pl~~GlL~g~~~~~~~~~~~~~~~ 157 (268)
||+||||||+++++.++.+..+++++|++||++++.. .+++++|+++||++++|+||+++.
T Consensus 159 ir~iGvSn~~~~~l~~~~~~~~~~~~q~~~~~~~~~~-~~~~~~~~~~gi~v~a~~pL~g~~------------------ 219 (290)
T PRK10376 159 VRHIGLSNVTPTQVAEARKIAEIVCVQNHYNLAHRAD-DALIDALARDGIAYVPFFPLGGFT------------------ 219 (290)
T ss_pred eeEEEecCCCHHHHHHHHhhCCeEEEecccCCCcCCh-HHHHHHHHHcCCEEEEeecCCCCC------------------
Confidence 9999999999999999988889999999999998763 679999999999999999997331
Q ss_pred CCCCCCcchhhhHHHHHHHHHHHHhcCCCHHHHHHHHHhcCCCCeeeecCCCChHHHHHHHhhcCCCCCHHHHHHHHHhC
Q 024433 158 FPRYKGENLDRNKNIYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLRIKLTKEDLKEISDAV 237 (268)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~qlal~~~l~~~~v~~vivg~~~~~~l~~nl~~~~~~Lt~~e~~~i~~~~ 237 (268)
+ ...+.+.++|+++|+|++|+||+|+++++.+.++|+|++|++|+++|++++++.|++++++.|+++.
T Consensus 220 -~-----------~~~~~l~~ia~~~~~t~aq~al~w~l~~~~~~~~i~G~~~~~~l~en~~a~~~~L~~e~~~~l~~~~ 287 (290)
T PRK10376 220 -P-----------LQSSTLSDVAASLGATPMQVALAWLLQRSPNILLIPGTSSVAHLRENLAAAELVLSEEVLAELDGIA 287 (290)
T ss_pred -h-----------hhhHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEeeCCCCHHHHHHHHhhccCCCCHHHHHHHHHHH
Confidence 0 0024799999999999999999999998777789999999999999999999999999999999886
Q ss_pred CC
Q 024433 238 PI 239 (268)
Q Consensus 238 ~~ 239 (268)
+.
T Consensus 288 ~~ 289 (290)
T PRK10376 288 RE 289 (290)
T ss_pred hc
Confidence 53
No 13
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=1.9e-39 Score=282.39 Aligned_cols=195 Identities=29% Similarity=0.378 Sum_probs=171.5
Q ss_pred CCCcEEEEecccccCCCCCCccCCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCC-CHHHHHHHHHHHHHcCceeee
Q 024433 3 PREKVQIATKFGVVGLRDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSV-PIEETIGEMKKLVEEGKIKYI 81 (268)
Q Consensus 3 ~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~p~~~~-~~~~~~~~l~~l~~~G~ir~i 81 (268)
+|++++|+||++.. +++.+++++++||+|||+||||+|++|+|++.. ...++|++|++++++|+||+|
T Consensus 67 ~R~~~~i~tK~~~~-----------~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~l~~l~~~G~ir~i 135 (275)
T PRK11565 67 AREELFITTKLWND-----------DHKRPREALEESLKKLQLDYVDLYLMHWPVPAIDHYVEAWKGMIELQKEGLIKSI 135 (275)
T ss_pred CHHHEEEEEEecCc-----------chHHHHHHHHHHHHHhCCCceEEEEecCCCCCcCcHHHHHHHHHHHHHcCCeeEE
Confidence 58999999998631 367899999999999999999999999998653 478999999999999999999
Q ss_pred ecCCCCHHHHHHHhCC--CCeeEecccccccccchhhhHHHHHHHhCCceeecccCCCcccCCcccccCCCCCcccccCC
Q 024433 82 GLSEASPDTIRRAHGV--HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVPADSILHFFP 159 (268)
Q Consensus 82 Gvs~~~~~~l~~~~~~--~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~vi~~~pl~~GlL~g~~~~~~~~~~~~~~~~~ 159 (268)
|||||+++++.+++.. ..++++|++||++.+. .+++++|+++||++++|+||++|. .+
T Consensus 136 GvSn~~~~~l~~~~~~~~v~~~~~Q~~~~~~~~~--~~~~~~~~~~~i~~~a~spl~~G~-~~----------------- 195 (275)
T PRK11565 136 GVCNFQIHHLQRLIDETGVTPVINQIELHPLMQQ--RQLHAWNATHKIQTESWSPLAQGG-KG----------------- 195 (275)
T ss_pred eeccCCHHHHHHHHHhCCCCceeeeeecCCccch--HHHHHHHHHCCCEEEEEccCCCCC-cc-----------------
Confidence 9999999999888754 3578999999998874 689999999999999999999763 00
Q ss_pred CCCCcchhhhHHHHHHHHHHHHhcCCCHHHHHHHHHhcCCCCeeeecCCCChHHHHHHHhhcCCCCCHHHHHHHHHhCCC
Q 024433 160 RYKGENLDRNKNIYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLRIKLTKEDLKEISDAVPI 239 (268)
Q Consensus 160 ~~~~~~~~~~~~~~~~l~~la~~~~~s~~qlal~~~l~~~~v~~vivg~~~~~~l~~nl~~~~~~Lt~~e~~~i~~~~~~ 239 (268)
.|. .+.+.++|+++|+|++|+||||+++++. ++|+|+++++|+++|+++++++|+++++++|+++...
T Consensus 196 ~~~----------~~~l~~ia~~~g~s~aq~aL~w~l~~~~--~~I~g~~~~~~i~~n~~a~~~~Ls~~~~~~i~~~~~~ 263 (275)
T PRK11565 196 VFD----------QKVIRDLADKYGKTPAQIVIRWHLDSGL--VVIPKSVTPSRIAENFDVFDFRLDKDELGEIAKLDQG 263 (275)
T ss_pred ccc----------CHHHHHHHHHhCCCHHHHHHHHHHcCCC--EeeCCCCCHHHHHHHHhccCCCcCHHHHHHHHhhccc
Confidence 010 1479999999999999999999999986 6999999999999999999999999999999999765
Q ss_pred C
Q 024433 240 E 240 (268)
Q Consensus 240 ~ 240 (268)
.
T Consensus 264 ~ 264 (275)
T PRK11565 264 K 264 (275)
T ss_pred C
Confidence 4
No 14
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=3.1e-39 Score=283.02 Aligned_cols=207 Identities=17% Similarity=0.200 Sum_probs=173.7
Q ss_pred CCcEEEEecccccCCCCCCccCCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCC-CCH-HHHHHHHHHHHHcCceeee
Q 024433 4 REKVQIATKFGVVGLRDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS-VPI-EETIGEMKKLVEEGKIKYI 81 (268)
Q Consensus 4 R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~p~~~-~~~-~~~~~~l~~l~~~G~ir~i 81 (268)
|++++|+||.. +.+++.+++++++||+|||+||||+|++|+|++. .+. +++|++|++++++||||+|
T Consensus 71 ~~~~~i~tk~~-----------~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~i 139 (292)
T PRK14863 71 PFRVTLSTVRA-----------DRGPDFVEAEARASLRRMGVERADAILVHSPTELFGPHGAALWERLQALKDQGLFAKI 139 (292)
T ss_pred ceEeecccccc-----------cccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhcCcchHHHHHHHHHHHHcCCcceE
Confidence 35688888842 1358999999999999999999999999999763 233 5789999999999999999
Q ss_pred ecCCCCHHHHHHHhCCCCeeEecccccccccchh-hhHHHHHHHhCCceeecccCCCcccCCcccccCCCCCcccccCCC
Q 024433 82 GLSEASPDTIRRAHGVHPITAVQMEWSLWTRDIE-EEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVPADSILHFFPR 160 (268)
Q Consensus 82 Gvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~-~~~~~~~~~~gi~vi~~~pl~~GlL~g~~~~~~~~~~~~~~~~~~ 160 (268)
|||||++.++..+....+++++|++||++++..+ .+++++|+++||++++|+||++|+|++... ..+ .
T Consensus 140 GvSn~~~~~~~~~~~~~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~G~L~~~~~--~~~--------~- 208 (292)
T PRK14863 140 GVSAHASDDPVGVARRFKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLNGLLFLPPD--RVP--------A- 208 (292)
T ss_pred eeeccCHHHHHHHHhcCCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhCccccCCcc--cCc--------c-
Confidence 9999999999888877899999999999998653 469999999999999999999999875411 000 0
Q ss_pred CCCcchhhhHHHHHHHHHHHHhcCCCHHHHHHHHHhcCCCCeeeecCCCChHHHHHHHhhcCCCCCHHHHHHHHHh
Q 024433 161 YKGENLDRNKNIYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLRIKLTKEDLKEISDA 236 (268)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~la~~~~~s~~qlal~~~l~~~~v~~vivg~~~~~~l~~nl~~~~~~Lt~~e~~~i~~~ 236 (268)
.+......+..+.+++++.++|++|+||+|++++|.|+++|+|+++++|+++|+++.+.+++++.+++|..-
T Consensus 209 ----~~~~~~~~~~~~~~~~~~~~~s~aqlalaw~l~~p~v~~~I~G~~~~~ql~~n~~a~~~~~~~~~~~~l~~~ 280 (292)
T PRK14863 209 ----QLKGASGRLSRVRRMIAEGRSDPLQAALGFALSRPEGSAVLVGVNSAAELSAVVAAASSPPPDLDWDDMAID 280 (292)
T ss_pred ----chhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHHHhcCCCccchhhccCC
Confidence 111223445677788888999999999999999999999999999999999999999988998888776443
No 15
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=1e-38 Score=262.87 Aligned_cols=212 Identities=26% Similarity=0.428 Sum_probs=188.1
Q ss_pred CCCcEEEEecccccCCCC---CCccCCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCcee
Q 024433 3 PREKVQIATKFGVVGLRD---NGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK 79 (268)
Q Consensus 3 ~R~~~~I~tK~~~~~~~~---~~~~~~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir 79 (268)
-|+++.|.||+|...... ...-+++|.+.|..++|+||.||+|||+|+++||+||+..+.+++.+++..|+++||+|
T Consensus 73 lRekieivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpLmd~eeVAeAf~~L~~sGKVr 152 (298)
T COG4989 73 LREKIEIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPLMDAEEVAEAFTHLHKSGKVR 152 (298)
T ss_pred hhhheEeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCcccCCHHHHHHHHHHHHhcCCee
Confidence 599999999999876421 12246899999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCHHHHHHHhCC--CCeeEecccccccccc-hhhhHHHHHHHhCCceeecccCCCc-ccCCcccccCCCCCccc
Q 024433 80 YIGLSEASPDTIRRAHGV--HPITAVQMEWSLWTRD-IEEEIIPLCRELGIGIVPYSPLGRG-FFGGKAVVESVPADSIL 155 (268)
Q Consensus 80 ~iGvs~~~~~~l~~~~~~--~~~~~~q~~~n~~~~~-~~~~~~~~~~~~gi~vi~~~pl~~G-lL~g~~~~~~~~~~~~~ 155 (268)
++|||||++.++.-+.+. ..+.+||+++|++... ...+.+++|+++.|.+++||||++| +|+|.
T Consensus 153 ~fGVSNf~p~Q~~LL~s~l~~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~~F~g~------------ 220 (298)
T COG4989 153 HFGVSNFNPAQFELLQSRLPFTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGGGLFLGD------------ 220 (298)
T ss_pred eeecCCCCHHHHHHHHHhccchhhhcceeeccccccccccchHHHHHHcCCCcccccccCCCccccCC------------
Confidence 999999999998877766 4579999999999865 3378999999999999999999988 33332
Q ss_pred ccCCCCCCcchhhhHHHHHHHHHHHHhcC-CCHHHHHHHHHhcCCCCeeeecCCCChHHHHHHHhhcCCCCCHHHHHHHH
Q 024433 156 HFFPRYKGENLDRNKNIYFRIENLAKKYK-CTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLRIKLTKEDLKEIS 234 (268)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~l~~la~~~~-~s~~qlal~~~l~~~~v~~vivg~~~~~~l~~nl~~~~~~Lt~~e~~~i~ 234 (268)
++......+|..+|.++| .|..++|++|++.+|.--.+|+|+.|++++.+.++++++.||.++|-+|.
T Consensus 221 -----------~~~q~l~~~l~~ia~e~ga~s~~~VaiAWllR~Pa~~~PiiGt~~~eRi~~a~~Al~~~LtRqqWf~Iy 289 (298)
T COG4989 221 -----------DKFQRLRKVLDRIAEEYGAVSITAVAIAWLLRHPAKPQPIIGTGNLERIRAAIKALSLTLTRQQWFEIY 289 (298)
T ss_pred -----------cchHHHHHHHHHHHHHhCcccHHHHHHHHHHhCcCcccceecCCCHHHHHHHHHHhhccccHHHHHHHH
Confidence 234456679999999999 79999999999999999999999999999999999999999999999998
Q ss_pred HhC
Q 024433 235 DAV 237 (268)
Q Consensus 235 ~~~ 237 (268)
.+.
T Consensus 290 ~Aa 292 (298)
T COG4989 290 TAA 292 (298)
T ss_pred HHh
Confidence 765
No 16
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=1.8e-34 Score=239.58 Aligned_cols=241 Identities=21% Similarity=0.282 Sum_probs=194.2
Q ss_pred CCCcEEEEecccccCCCCCCccCCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCC----CCHHHHHHHHHHHHHcCce
Q 024433 3 PREKVQIATKFGVVGLRDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS----VPIEETIGEMKKLVEEGKI 78 (268)
Q Consensus 3 ~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~p~~~----~~~~~~~~~l~~l~~~G~i 78 (268)
||+.+||+||+|...-+. ...++++++.+++++++||+||++||+|++++|..+.. ..+.|++.+|++++++|||
T Consensus 94 PR~aYyIaTKvgRy~ld~-~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~ld~vl~Etlp~Le~lk~~Gk~ 172 (342)
T KOG1576|consen 94 PREAYYIATKVGRYELDY-ANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPNLDIVLNETLPALEELKQEGKI 172 (342)
T ss_pred ChhheeeeeeeeecccCc-cccccchHHHHHHHHHHHHHHhCCceeEEEEeecccccccccHHHHHHHHHHHHHHhcCce
Confidence 899999999999765432 33589999999999999999999999999999997644 3357999999999999999
Q ss_pred eeeecCCCCHHHHHHHhCC--CCeeEec--ccccccccchhhhHHHHHHHhCCceeecccCCCcccCCcccccCCCCCcc
Q 024433 79 KYIGLSEASPDTIRRAHGV--HPITAVQ--MEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVPADSI 154 (268)
Q Consensus 79 r~iGvs~~~~~~l~~~~~~--~~~~~~q--~~~n~~~~~~~~~~~~~~~~~gi~vi~~~pl~~GlL~g~~~~~~~~~~~~ 154 (268)
|+|||+.+..+.+..+.+. +.++++. ..|++.+.. ....+++.+..|++|++.++++.|+|+....+..+|
T Consensus 173 RfiGitgypldvl~~~ae~~~G~~dvvlsY~ry~l~d~t-Ll~~~~~~~sk~vgVi~AsalsmgLLt~~gp~~wHP---- 247 (342)
T KOG1576|consen 173 RFIGITGYPLDVLTECAERGKGRLDVVLSYCRYTLNDNT-LLRYLKRLKSKGVGVINASALSMGLLTNQGPPPWHP---- 247 (342)
T ss_pred eEeeecccchHHHHHHHhcCCCceeeehhhhhhccccHH-HHHHHHHHHhcCceEEehhhHHHHHhhcCCCCCCCC----
Confidence 9999999999999888876 4477776 566665544 267788888999999999999999999774333322
Q ss_pred cccCCCCCCcchhhhHHHHHHHHHHHHhcCCCHHHHHHHHHhcCCCCeeeecCCCChHHHHHHHhhcCCCCCHHHHHHHH
Q 024433 155 LHFFPRYKGENLDRNKNIYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLRIKLTKEDLKEIS 234 (268)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~qlal~~~l~~~~v~~vivg~~~~~~l~~nl~~~~~~Lt~~e~~~i~ 234 (268)
..++..+...+-.++|.+.|+....+|++|.++.++++++++|++|.+++..|+++..-.||.-+-.+..
T Consensus 248 ----------aS~Elk~~a~~aa~~Cq~rnv~l~kLA~~Yam~~~~~~~~lvGm~s~~~l~~nLdan~~~ls~~~~Qevl 317 (342)
T KOG1576|consen 248 ----------ASDELKEAAKAAAEYCQSRNVELGKLAMYYAMSLPGVSTVLVGMSSRQLLRINLDANFDRLSSKHEQEVL 317 (342)
T ss_pred ----------CCHHHHHHHHHHHHHHHHcCccHHHHHHHHHHccCCcceEEecCchHHHHHHHHHhhhccccchhHHHHH
Confidence 3456777788899999999999999999999999999999999999999999999866677763223333
Q ss_pred HhCCCCccCCCCCccccccccccccCCCCCCC
Q 024433 235 DAVPIEEVAGDRDPEGFDKASWTFANTPPKDC 266 (268)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (268)
.++++ +-+.--+..|+..+.-|||.
T Consensus 318 ~~~r~-------~~~~~kn~~W~g~~~~~yw~ 342 (342)
T KOG1576|consen 318 RILRE-------ILKETKNEEWEGGILHPYWI 342 (342)
T ss_pred HHHHH-------HhhhhccCCCCCCCCccccC
Confidence 33322 11112348899888888884
No 17
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=4.7e-33 Score=241.08 Aligned_cols=201 Identities=25% Similarity=0.366 Sum_probs=175.5
Q ss_pred CCCCcEEEEecccccCCCCCCccCCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHH-----HHHHHHHHHHHcC
Q 024433 2 LPREKVQIATKFGVVGLRDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIE-----ETIGEMKKLVEEG 76 (268)
Q Consensus 2 ~~R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~p~~~~~~~-----~~~~~l~~l~~~G 76 (268)
+.|++++++||+...+.. +++.+++-++++|++||+||+|+|+||..+. ..++ ++++++++++++|
T Consensus 73 ~~Rekv~LaTKlp~~~~~--------~~edm~r~fneqLekl~~Dy~D~yliH~l~~-e~~~k~~~~g~~df~~kak~eG 143 (391)
T COG1453 73 GYREKVKLATKLPSWPVK--------DREDMERIFNEQLEKLGTDYIDYYLIHGLNT-ETWEKIERLGVFDFLEKAKAEG 143 (391)
T ss_pred cccceEEEEeecCCcccc--------CHHHHHHHHHHHHHHhCCchhhhhhhccccH-HHHHHHHccChHHHHHHHHhcC
Confidence 359999999999865543 5899999999999999999999999999877 3333 3799999999999
Q ss_pred ceeeeecCCC-CHHHHHHHhCCCCeeEecccccccccchh--hhHHHHHHHhCCceeecccCCCcccCCcccccCCCCCc
Q 024433 77 KIKYIGLSEA-SPDTIRRAHGVHPITAVQMEWSLWTRDIE--EEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVPADS 153 (268)
Q Consensus 77 ~ir~iGvs~~-~~~~l~~~~~~~~~~~~q~~~n~~~~~~~--~~~~~~~~~~gi~vi~~~pl~~GlL~g~~~~~~~~~~~ 153 (268)
+||++|+|.| +.+.+.+++...++|++|++||+++.+.. .+.+.+|.++|++|+.++|+.+|-|+.. .
T Consensus 144 kIr~~GFSfHgs~e~~~~iv~a~~~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~gG~l~~~-----v---- 214 (391)
T COG1453 144 KIRNAGFSFHGSTEVFKEIVDAYPWDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDGGGLLYN-----V---- 214 (391)
T ss_pred cEEEeeecCCCCHHHHHHHHhcCCcceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCCCCcccC-----C----
Confidence 9999999999 66788999999999999999999998743 4899999999999999999999976643 1
Q ss_pred ccccCCCCCCcchhhhHHHHHHHHHHHHhcC--CCHHHHHHHHHhcCCCCeeeecCCCChHHHHHHHhhcCC--C-CCHH
Q 024433 154 ILHFFPRYKGENLDRNKNIYFRIENLAKKYK--CTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLRI--K-LTKE 228 (268)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~--~s~~qlal~~~l~~~~v~~vivg~~~~~~l~~nl~~~~~--~-Lt~~ 228 (268)
| +++.+|.++++ .||+.+|+||+++||.|.+|++||++++|+++|++.++. + ||++
T Consensus 215 -----P--------------~~~~~l~~~~~~~~sP~~wa~R~~~shp~V~~vlsGm~~~~~l~enLk~~~~~~p~lte~ 275 (391)
T COG1453 215 -----P--------------EKLEELCRPASPKRSPAEWALRYLLSHPEVTTVLSGMNTPEQLEENLKIASELEPSLTEE 275 (391)
T ss_pred -----C--------------HHHHHHHHhcCCCCCcHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHHHhhcCCccCHH
Confidence 1 38889998876 579999999999999999999999999999999998863 3 9999
Q ss_pred HHHHHHHhCCC
Q 024433 229 DLKEISDAVPI 239 (268)
Q Consensus 229 e~~~i~~~~~~ 239 (268)
|+.-+.++.+.
T Consensus 276 e~~il~~v~~~ 286 (391)
T COG1453 276 ELQILEKVEEI 286 (391)
T ss_pred HHHHHHHHHHH
Confidence 99888777543
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=97.94 E-value=2e-05 Score=65.59 Aligned_cols=71 Identities=17% Similarity=0.199 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHcCceeeeecCCCCHHHHHHHhCC--CCeeEecccccccccchhhhHHHHHHHhCCceeecc
Q 024433 62 IEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGV--HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYS 133 (268)
Q Consensus 62 ~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~--~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~vi~~~ 133 (268)
+...|..||+++.+|+|..||||.|+..++++++.. ..|..+|+.+.-...-+ .++.+||.+++|.+...+
T Consensus 155 lkplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~~cCvvP-pdLqafa~~hdiQLltHs 227 (285)
T KOG3023|consen 155 LKPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQVVPESNQVNLGQCCVVP-PDLQAFADRHDIQLLTHS 227 (285)
T ss_pred HHHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhccccccceeeccccccCC-HHHHHHhhhcceeeeecC
Confidence 346899999999999999999999999999999886 56788898887766655 799999999999988865
No 19
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=88.62 E-value=5.1 Score=34.52 Aligned_cols=104 Identities=13% Similarity=0.035 Sum_probs=67.5
Q ss_pred HHHHHHHcCceeeeecC-CCCHHHHHHHhCCCCeeEec--ccccccccchhhhHHHHHHHhCCceeecccCCCcccCCcc
Q 024433 68 EMKKLVEEGKIKYIGLS-EASPDTIRRAHGVHPITAVQ--MEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKA 144 (268)
Q Consensus 68 ~l~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~q--~~~n~~~~~~~~~~~~~~~~~gi~vi~~~pl~~GlL~g~~ 144 (268)
.|.+..++|+. -+|+- ......+.+++....+|++- .+.++++...-..++..|+..|+..+++.|-..
T Consensus 9 ~lk~~l~~g~~-~~g~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~~~------- 80 (256)
T PRK10558 9 KFKAALAAKQV-QIGCWSALANPITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPTNE------- 80 (256)
T ss_pred HHHHHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCCCC-------
Confidence 35555566875 45542 22223444444444455554 477877766557888899999999988887642
Q ss_pred cccCCCCCcccccCCCCCCcchhhhHHHHHHHHHHHHhcCCCHHHHHHHHHhcCCCCeeeecCCCChHHHHHHHhhcCC
Q 024433 145 VVESVPADSILHFFPRYKGENLDRNKNIYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLRI 223 (268)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~qlal~~~l~~~~v~~vivg~~~~~~l~~nl~~~~~ 223 (268)
...+..+|..+....++|-.+|.+++++.+++..+
T Consensus 81 --------------------------------------------~~~i~r~LD~Ga~giivP~v~tae~a~~~v~a~ky 115 (256)
T PRK10558 81 --------------------------------------------PVIIKRLLDIGFYNFLIPFVETAEEARRAVASTRY 115 (256)
T ss_pred --------------------------------------------HHHHHHHhCCCCCeeeecCcCCHHHHHHHHHHcCC
Confidence 13556677777777778888888888877776665
No 20
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=84.44 E-value=12 Score=32.39 Aligned_cols=103 Identities=16% Similarity=0.096 Sum_probs=67.5
Q ss_pred HHHHHHcCceeeeec--CCCCHHHHHHHhCCCCeeEe--cccccccccchhhhHHHHHHHhCCceeecccCCCcccCCcc
Q 024433 69 MKKLVEEGKIKYIGL--SEASPDTIRRAHGVHPITAV--QMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKA 144 (268)
Q Consensus 69 l~~l~~~G~ir~iGv--s~~~~~~l~~~~~~~~~~~~--q~~~n~~~~~~~~~~~~~~~~~gi~vi~~~pl~~GlL~g~~ 144 (268)
|.+..++|+. .+|+ ..-++.. .+++....||++ =.+.++++...-..++..++..|+..+++.|-..
T Consensus 9 lk~~L~~G~~-~~G~~~~~~sp~~-~E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp~~~------- 79 (267)
T PRK10128 9 FKEGLRKGEV-QIGLWLSSTTSYM-AEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPVEGS------- 79 (267)
T ss_pred HHHHHHcCCc-eEEEEecCCCcHH-HHHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECCCCC-------
Confidence 5555566775 3443 2224433 333333335555 4478887766556788888889998888776431
Q ss_pred cccCCCCCcccccCCCCCCcchhhhHHHHHHHHHHHHhcCCCHHHHHHHHHhcCCCCeeeecCCCChHHHHHHHhhcCCC
Q 024433 145 VVESVPADSILHFFPRYKGENLDRNKNIYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLRIK 224 (268)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~qlal~~~l~~~~v~~vivg~~~~~~l~~nl~~~~~~ 224 (268)
...+..+|+.+.-..++|-..|.++.++.+++..++
T Consensus 80 --------------------------------------------~~~i~r~LD~GA~GIivP~V~saeeA~~~V~a~rYp 115 (267)
T PRK10128 80 --------------------------------------------KPLIKQVLDIGAQTLLIPMVDTAEQARQVVSATRYP 115 (267)
T ss_pred --------------------------------------------HHHHHHHhCCCCCeeEecCcCCHHHHHHHHHhcCCC
Confidence 145577888887778888888888888888877763
No 21
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=84.09 E-value=20 Score=30.95 Aligned_cols=134 Identities=13% Similarity=0.179 Sum_probs=81.2
Q ss_pred CHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCceeeeecCCCCHHHHHHHhCC--CCeeEecc
Q 024433 28 TPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGV--HPITAVQM 105 (268)
Q Consensus 28 ~~~~i~~~~e~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~--~~~~~~q~ 105 (268)
+.+.+.+...+. ..-|.|.||+-.= +......+.+...++.+++.-.+ -+.+-+++++.++++++. +..-+|
T Consensus 23 d~~~i~~~A~~~-~~~GAdiIDVg~~--~~~~eE~~r~~~~v~~l~~~~~~-plsIDT~~~~v~eaaL~~~~G~~iIN-- 96 (261)
T PRK07535 23 DAAFIQKLALKQ-AEAGADYLDVNAG--TAVEEEPETMEWLVETVQEVVDV-PLCIDSPNPAAIEAGLKVAKGPPLIN-- 96 (261)
T ss_pred CHHHHHHHHHHH-HHCCCCEEEECCC--CCchhHHHHHHHHHHHHHHhCCC-CEEEeCCCHHHHHHHHHhCCCCCEEE--
Confidence 344555444443 3679999999853 22223355566666666654332 488899999999999886 333223
Q ss_pred cccccccchhhhHHHHHHHhCCceeecccCCCcccCCcccccCCCCCcccccCCCCCCcchhhhHHHHHHHHHHHHhcCC
Q 024433 106 EWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVPADSILHFFPRYKGENLDRNKNIYFRIENLAKKYKC 185 (268)
Q Consensus 106 ~~n~~~~~~~~~~~~~~~~~gi~vi~~~pl~~GlL~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~ 185 (268)
..|..... ...+++.++++|..++...--..|. | ...+......+.+-+.+.++|+
T Consensus 97 sIs~~~~~-~~~~~~l~~~~g~~vv~m~~~~~g~-------------------P----~t~~~~~~~l~~~v~~a~~~GI 152 (261)
T PRK07535 97 SVSAEGEK-LEVVLPLVKKYNAPVVALTMDDTGI-------------------P----KDAEDRLAVAKELVEKADEYGI 152 (261)
T ss_pred eCCCCCcc-CHHHHHHHHHhCCCEEEEecCCCCC-------------------C----CCHHHHHHHHHHHHHHHHHcCC
Confidence 23332211 2578999999999998866443442 1 1123334555566667778888
Q ss_pred CHHHHH
Q 024433 186 TSAQLA 191 (268)
Q Consensus 186 s~~qla 191 (268)
++.++.
T Consensus 153 ~~~~Ii 158 (261)
T PRK07535 153 PPEDIY 158 (261)
T ss_pred CHhHEE
Confidence 766654
No 22
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=83.56 E-value=12 Score=32.04 Aligned_cols=103 Identities=12% Similarity=0.044 Sum_probs=64.3
Q ss_pred HHHHHHcCceeeeec-CCCCHHHHHHHhCCCCeeEecc--cccccccchhhhHHHHHHHhCCceeecccCCCcccCCccc
Q 024433 69 MKKLVEEGKIKYIGL-SEASPDTIRRAHGVHPITAVQM--EWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAV 145 (268)
Q Consensus 69 l~~l~~~G~ir~iGv-s~~~~~~l~~~~~~~~~~~~q~--~~n~~~~~~~~~~~~~~~~~gi~vi~~~pl~~GlL~g~~~ 145 (268)
|.+..++|+. .+|+ .+.....+.+++....||++-+ +.++++...-..++..++..|+..+++.|-..
T Consensus 3 lk~~l~~g~~-~~G~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~~~-------- 73 (249)
T TIGR03239 3 FRQDLLARET-LIGCWSALGNPITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPWNE-------- 73 (249)
T ss_pred HHHHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCCCC--------
Confidence 3344455664 3444 2222233444444444555544 77777765447888888889999888877641
Q ss_pred ccCCCCCcccccCCCCCCcchhhhHHHHHHHHHHHHhcCCCHHHHHHHHHhcCCCCeeeecCCCChHHHHHHHhhcCC
Q 024433 146 VESVPADSILHFFPRYKGENLDRNKNIYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLRI 223 (268)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~qlal~~~l~~~~v~~vivg~~~~~~l~~nl~~~~~ 223 (268)
...++.+|..+....++|-.+|.++.++.+++..+
T Consensus 74 -------------------------------------------~~~i~r~LD~Ga~gIivP~v~taeea~~~v~a~ky 108 (249)
T TIGR03239 74 -------------------------------------------PVIIKRLLDIGFYNFLIPFVESAEEAERAVAATRY 108 (249)
T ss_pred -------------------------------------------HHHHHHHhcCCCCEEEecCcCCHHHHHHHHHHcCC
Confidence 13456677777777777777888888777766655
No 23
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=81.11 E-value=12 Score=31.89 Aligned_cols=107 Identities=16% Similarity=0.129 Sum_probs=68.9
Q ss_pred CCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcC-ceeeeecCCCCHHHHHHHhCCCCeeEe
Q 024433 25 VKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEG-KIKYIGLSEASPDTIRRAHGVHPITAV 103 (268)
Q Consensus 25 ~~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G-~ir~iGvs~~~~~~l~~~~~~~~~~~~ 103 (268)
..++.+...+-+ +.|..+|+++|.+-..-.+.........++.++.+.+.+ .++...++.-....++.+.+.. ++.+
T Consensus 14 ~~~s~e~~~~i~-~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~g-~~~i 91 (265)
T cd03174 14 ATFSTEDKLEIA-EALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEAG-VDEV 91 (265)
T ss_pred CCCCHHHHHHHH-HHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhCC-cCEE
Confidence 456677666666 457799999998887665533222345688888888888 5666666654466666666653 5666
Q ss_pred cccccccc--------c------chhhhHHHHHHHhCCceeecc
Q 024433 104 QMEWSLWT--------R------DIEEEIIPLCRELGIGIVPYS 133 (268)
Q Consensus 104 q~~~n~~~--------~------~~~~~~~~~~~~~gi~vi~~~ 133 (268)
++.+..-+ + ..-...+..+++.|+.+...-
T Consensus 92 ~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 92 RIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 66554431 1 111577888899998766644
No 24
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=79.99 E-value=19 Score=30.15 Aligned_cols=87 Identities=13% Similarity=0.057 Sum_probs=61.9
Q ss_pred ccEEEeccCCCCCCHHHHHHHHHHHHHcCcee-eeecCCCCHHHHHHHhCCCCeeEecccccccccch-hhhHHHHHHHh
Q 024433 48 IDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHGVHPITAVQMEWSLWTRDI-EEEIIPLCREL 125 (268)
Q Consensus 48 iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~-~~~~~~~~~~~ 125 (268)
.++.++-.|-+.. .++.+.++.+...+. ..+-|.++...+.+++....++++|+..+....-. ...+...|+++
T Consensus 120 ~~i~~iEeP~~~~----d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~~~~d~~~~k~~~~GGi~~~~~i~~~a~~~ 195 (229)
T cd00308 120 YGLAWIEEPCAPD----DLEGYAALRRRTGIPIAADESVTTVDDALEALELGAVDILQIKPTRVGGLTESRRAADLAEAF 195 (229)
T ss_pred cCCCeEECCCCcc----CHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHc
Confidence 4566666664332 356677777776655 34666678888888888888999999877654321 26889999999
Q ss_pred CCceeecccCCCc
Q 024433 126 GIGIVPYSPLGRG 138 (268)
Q Consensus 126 gi~vi~~~pl~~G 138 (268)
|+.+...+.+..|
T Consensus 196 gi~~~~~~~~~s~ 208 (229)
T cd00308 196 GIRVMVHGTLESS 208 (229)
T ss_pred CCEEeecCCCCCH
Confidence 9999998776654
No 25
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=78.45 E-value=1.2 Score=40.06 Aligned_cols=54 Identities=19% Similarity=0.330 Sum_probs=38.4
Q ss_pred cCceeeeecCCCCHHHHHHHhCCCC-eeEecccccccccchhhhHHHHHHHhCCc
Q 024433 75 EGKIKYIGLSEASPDTIRRAHGVHP-ITAVQMEWSLWTRDIEEEIIPLCRELGIG 128 (268)
Q Consensus 75 ~G~ir~iGvs~~~~~~l~~~~~~~~-~~~~q~~~n~~~~~~~~~~~~~~~~~gi~ 128 (268)
-|+|||+||--++.+++.++..... -+..+.+..++....+..+++.+++.||.
T Consensus 263 VGriRYlGVlLYDaDrv~eaAs~~~e~dly~~Q~~ifLDP~DP~Vi~~A~k~Gip 317 (513)
T COG1140 263 VGRIRYLGVLLYDADRVEEAASTENEKDLYERQLDVFLDPHDPAVIEQARKDGIP 317 (513)
T ss_pred hcceeeeeeeeecHHHHHHhhcCccHHHHHHHHHhhhcCCCCHHHHHHHHHcCCc
Confidence 4999999999999999998877633 33444444554433356778888887775
No 26
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=77.58 E-value=14 Score=32.61 Aligned_cols=73 Identities=12% Similarity=0.037 Sum_probs=54.1
Q ss_pred HHHHHHHHHcCcee-eeecCCCCHHHHHHHhCCCCeeEecccccccccc-hhhhHHHHHHHhCCceeecccCCCc
Q 024433 66 IGEMKKLVEEGKIK-YIGLSEASPDTIRRAHGVHPITAVQMEWSLWTRD-IEEEIIPLCRELGIGIVPYSPLGRG 138 (268)
Q Consensus 66 ~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~~~~~~~~~gi~vi~~~pl~~G 138 (268)
++.+.++++...+. ..|=+-++...+.++++....+++|+..+....- ....+...|+++|+.+...+-+..|
T Consensus 217 ~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~~~~~~GGi~~~~~~~~~a~~~gi~~~~~~~~~~~ 291 (316)
T cd03319 217 DDGLAYLRDKSPLPIMADESCFSAADAARLAGGGAYDGINIKLMKTGGLTEALRIADLARAAGLKVMVGCMVESS 291 (316)
T ss_pred HHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCCCCEEEEeccccCCHHHHHHHHHHHHHcCCCEEEECchhhH
Confidence 56677777776665 3466677888899999988899999986665322 1268899999999999887666544
No 27
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=77.03 E-value=27 Score=29.86 Aligned_cols=102 Identities=16% Similarity=0.163 Sum_probs=62.3
Q ss_pred HHHHHHcCceeeeec--CCCCHHHHHHHhCCCCeeEec--ccccccccchhhhHHHHHHHhCCceeecccCCCcccCCcc
Q 024433 69 MKKLVEEGKIKYIGL--SEASPDTIRRAHGVHPITAVQ--MEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGFFGGKA 144 (268)
Q Consensus 69 l~~l~~~G~ir~iGv--s~~~~~~l~~~~~~~~~~~~q--~~~n~~~~~~~~~~~~~~~~~gi~vi~~~pl~~GlL~g~~ 144 (268)
+.+..++|+. -+|+ ...++..++.+... ++|++- ++.++++...-..++..++..|+.++++-|-..
T Consensus 3 lk~~l~~g~~-~~g~~~~~~~p~~~e~~~~~-g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~~~~------- 73 (249)
T TIGR02311 3 FKQALKEGQP-QIGLWLGLADPYAAEICAGA-GFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPAIGD------- 73 (249)
T ss_pred HHHHHHCCCc-eEEEEEeCCCcHHHHHHHhc-CCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECCCCC-------
Confidence 4455566775 3443 33455555554443 355554 477776554335577777777888777755431
Q ss_pred cccCCCCCcccccCCCCCCcchhhhHHHHHHHHHHHHhcCCCHHHHHHHHHhcCCCCeeeecCCCChHHHHHHHhhcCC
Q 024433 145 VVESVPADSILHFFPRYKGENLDRNKNIYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLRI 223 (268)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~qlal~~~l~~~~v~~vivg~~~~~~l~~nl~~~~~ 223 (268)
+ .-++.+|..+.-..++|-..|++++++-+++..+
T Consensus 74 ------------------------------------------~--~~i~~~Ld~Ga~gIivP~v~s~e~a~~~v~~~~y 108 (249)
T TIGR02311 74 ------------------------------------------P--VLIKQLLDIGAQTLLVPMIETAEQAEAAVAATRY 108 (249)
T ss_pred ------------------------------------------H--HHHHHHhCCCCCEEEecCcCCHHHHHHHHHHcCC
Confidence 1 2456777777766777788888887777777654
No 28
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=76.95 E-value=44 Score=28.64 Aligned_cols=104 Identities=19% Similarity=0.141 Sum_probs=68.1
Q ss_pred CCHHHHHHHHHHHHhHcCCCcccEEE-eccCCCC-----CCHHHHHHHHHHHHHcCceeeeecCCCCHHHHHHHhCCCCe
Q 024433 27 GTPDYVRSCCEASLKRLDVDYIDLYY-QHRVDTS-----VPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVHPI 100 (268)
Q Consensus 27 ~~~~~i~~~~e~SL~~L~~d~iDl~~-lH~p~~~-----~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~ 100 (268)
.+.+.+.+..++.+ .-|.|.||+-. --+|+.. ...+.+...++.+++.-.+ -+.+-+++++.++++++....
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~-piSIDT~~~~v~~aaL~~g~~ 98 (258)
T cd00423 21 LSLDKALEHARRMV-EEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDV-PISVDTFNAEVAEAALKAGAD 98 (258)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCC-eEEEeCCcHHHHHHHHHhCCC
Confidence 45666776665554 77999999974 3335431 1234466667777665333 389999999999999987632
Q ss_pred eEecccccccccchhhhHHHHHHHhCCceeecccCC
Q 024433 101 TAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLG 136 (268)
Q Consensus 101 ~~~q~~~n~~~~~~~~~~~~~~~~~gi~vi~~~pl~ 136 (268)
-+| ..+..... .++++.++++|..++.+..-.
T Consensus 99 iIN--dis~~~~~--~~~~~l~~~~~~~vV~m~~~~ 130 (258)
T cd00423 99 IIN--DVSGGRGD--PEMAPLAAEYGAPVVLMHMDG 130 (258)
T ss_pred EEE--eCCCCCCC--hHHHHHHHHcCCCEEEECcCC
Confidence 222 33333221 578999999999998876543
No 29
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=75.02 E-value=19 Score=29.67 Aligned_cols=114 Identities=16% Similarity=0.179 Sum_probs=75.3
Q ss_pred cCCCCHHHHHHHHHHHHhHc-----------CCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCceeeeecCCCCHHHHH
Q 024433 24 IVKGTPDYVRSCCEASLKRL-----------DVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIR 92 (268)
Q Consensus 24 ~~~~~~~~i~~~~e~SL~~L-----------~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~ 92 (268)
....+.+.+.+++++-+.-. .-+.+|...+..- .+.+...-+.|+++.+=|+---+++.||.-+...
T Consensus 41 GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqt--LQ~~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R 118 (193)
T PF07021_consen 41 GVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQT--LQAVRRPDEVLEEMLRVGRRAIVSFPNFGHWRNR 118 (193)
T ss_pred EEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhH--HHhHhHHHHHHHHHHHhcCeEEEEecChHHHHHH
Confidence 34567777777765554433 3344444444331 1112334566888888898888999999777654
Q ss_pred H-Hh-CCCCeeEecccccccccch-----hhhHHHHHHHhCCceeecccCCCcc
Q 024433 93 R-AH-GVHPITAVQMEWSLWTRDI-----EEEIIPLCRELGIGIVPYSPLGRGF 139 (268)
Q Consensus 93 ~-~~-~~~~~~~~q~~~n~~~~~~-----~~~~~~~~~~~gi~vi~~~pl~~Gl 139 (268)
- ++ ...-|..-.++|+-++... -.++-++|++.|+.+.-..++..+.
T Consensus 119 ~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 119 LQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIEERVFLDGGR 172 (193)
T ss_pred HHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEEEEEEEcCCC
Confidence 3 33 4444677778887766431 1789999999999999999998663
No 30
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=74.38 E-value=48 Score=30.21 Aligned_cols=86 Identities=16% Similarity=0.041 Sum_probs=60.9
Q ss_pred EEEeccCCCCCCHHHHHHHHHHHHHc------CceeeeecCCCCHHHHHHHhCCCCeeEecccccccccch-hhhHHHHH
Q 024433 50 LYYQHRVDTSVPIEETIGEMKKLVEE------GKIKYIGLSEASPDTIRRAHGVHPITAVQMEWSLWTRDI-EEEIIPLC 122 (268)
Q Consensus 50 l~~lH~p~~~~~~~~~~~~l~~l~~~------G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~-~~~~~~~~ 122 (268)
++++-.|-+..+.++-++.+.++++. +.=-..|-+.++...+.++++....+++|+..+-.-.-. ...+...|
T Consensus 229 ~~~iEqP~~~~d~~~~~~~~a~Lr~~~~~~~~~iPIa~dEs~~t~~d~~~li~~~a~div~~kl~k~GGIt~a~kia~lA 308 (369)
T cd03314 229 PLRIEGPMDAGSREAQIERMAALRAELDRRGVGVRIVADEWCNTLEDIRDFADAGAAHMVQIKTPDLGGIDNTIDAVLYC 308 (369)
T ss_pred cEEEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCcCCHHHHHHHHHhCCCCEEEecchhcCCHHHHHHHHHHH
Confidence 34666665433332346677777766 343446777889999999999888999999887654322 27889999
Q ss_pred HHhCCceeecccC
Q 024433 123 RELGIGIVPYSPL 135 (268)
Q Consensus 123 ~~~gi~vi~~~pl 135 (268)
+.+||.++..+..
T Consensus 309 ~a~Gi~~~~h~~~ 321 (369)
T cd03314 309 KEHGVGAYLGGSC 321 (369)
T ss_pred HHcCCcEEEeCCC
Confidence 9999999986543
No 31
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=74.20 E-value=33 Score=29.34 Aligned_cols=73 Identities=14% Similarity=0.140 Sum_probs=53.8
Q ss_pred HHHHHHHHHcCcee-eeecCCCCHHHHHHHhCCCCeeEecccccccccc-hhhhHHHHHHHhCCceeecccCCCc
Q 024433 66 IGEMKKLVEEGKIK-YIGLSEASPDTIRRAHGVHPITAVQMEWSLWTRD-IEEEIIPLCRELGIGIVPYSPLGRG 138 (268)
Q Consensus 66 ~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~~~~~~~~~gi~vi~~~pl~~G 138 (268)
++.+.++++...+. ..|=+.++...+.++++...++++|+..+....- ....+...|+.+|+.++..+.+..|
T Consensus 169 ~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~~~~~A~~~gi~~~~~~~~~s~ 243 (265)
T cd03315 169 LEGRAALARATDTPIMADESAFTPHDAFRELALGAADAVNIKTAKTGGLTKAQRVLAVAEALGLPVMVGSMIESG 243 (265)
T ss_pred HHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCCCCEEEEecccccCHHHHHHHHHHHHHcCCcEEecCccchH
Confidence 56666777665544 4455667888888888888899999987765432 2368899999999999887766554
No 32
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=72.75 E-value=72 Score=29.55 Aligned_cols=86 Identities=13% Similarity=-0.018 Sum_probs=62.9
Q ss_pred cEEEeccCCCCCCHHHHHHHHHHHHHc------CceeeeecCCCCHHHHHHHhCCCCeeEecccccccccch-hhhHHHH
Q 024433 49 DLYYQHRVDTSVPIEETIGEMKKLVEE------GKIKYIGLSEASPDTIRRAHGVHPITAVQMEWSLWTRDI-EEEIIPL 121 (268)
Q Consensus 49 Dl~~lH~p~~~~~~~~~~~~l~~l~~~------G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~-~~~~~~~ 121 (268)
++ ++-.|-+..+.++.++.+.+++++ +.=-..+-+.++...+.+++.....+++|+..+-.-.-. ...+..+
T Consensus 265 ~~-~iEqPv~~~d~~~~~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~~a~d~v~iK~~k~GGIt~a~kia~l 343 (408)
T TIGR01502 265 HL-RIEGPMDVGSRQAQIEAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDAKAGHMVQIKTPDVGGVNNIARAIMY 343 (408)
T ss_pred Ce-EEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHH
Confidence 44 677765443334557777777766 333345777888999999999988999999887654322 2789999
Q ss_pred HHHhCCceeecccC
Q 024433 122 CRELGIGIVPYSPL 135 (268)
Q Consensus 122 ~~~~gi~vi~~~pl 135 (268)
|+.+||.+...+..
T Consensus 344 A~~~Gi~~~~g~~~ 357 (408)
T TIGR01502 344 CKANGMGAYVGGTC 357 (408)
T ss_pred HHHcCCEEEEeCCC
Confidence 99999999987665
No 33
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=72.72 E-value=9.2 Score=31.79 Aligned_cols=67 Identities=15% Similarity=0.200 Sum_probs=45.8
Q ss_pred HHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCceeeeecC-CCCHHHHHHHhCCCCeeEecccc
Q 024433 39 SLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS-EASPDTIRRAHGVHPITAVQMEW 107 (268)
Q Consensus 39 SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~~ 107 (268)
.+..+|.|++=+.+........+.+.+ ..+.+.. .+.++.+||. |.+++.+.++++...++++|+.-
T Consensus 16 ~~~~~GaD~iGfIf~~~SpR~V~~~~a-~~i~~~~-~~~~~~VgVf~~~~~~~i~~~~~~~~~d~vQLHG 83 (207)
T PRK13958 16 AASQLPIDAIGFIHYEKSKRHQTITQI-KKLASAV-PNHIDKVCVVVNPDLTTIEHILSNTSINTIQLHG 83 (207)
T ss_pred HHHHcCCCEEEEecCCCCcccCCHHHH-HHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHhCCCCEEEECC
Confidence 345799999998754443333333333 3333322 2557889996 77999999999999999999965
No 34
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=71.79 E-value=83 Score=29.74 Aligned_cols=106 Identities=16% Similarity=0.189 Sum_probs=64.8
Q ss_pred CCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHH----cCceeeeecC--CCCHHHHHHHhCCC
Q 024433 25 VKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVE----EGKIKYIGLS--EASPDTIRRAHGVH 98 (268)
Q Consensus 25 ~~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~----~G~ir~iGvs--~~~~~~l~~~~~~~ 98 (268)
..++.+.|.+.++. +...|...+-|..=..| +..+++.+.+.++.+++ .|.++.++|+ ..+.+.+.++.+.+
T Consensus 113 ~~Ls~EEI~~ea~~-~~~~G~~~i~LvsGe~p-~~~~~eyi~e~i~~I~~~~~~~g~i~~v~inig~lt~eey~~LkeaG 190 (469)
T PRK09613 113 KKLTQEEIREEVKA-LEDMGHKRLALVAGEDP-PNCDIEYILESIKTIYSTKHGNGEIRRVNVNIAPTTVENYKKLKEAG 190 (469)
T ss_pred eECCHHHHHHHHHH-HHHCCCCEEEEEeCCCC-CCCCHHHHHHHHHHHHHhccccCcceeeEEEeecCCHHHHHHHHHcC
Confidence 35789999999965 57899877655422222 33457777777777775 5677766664 44667777776653
Q ss_pred --CeeEecccccc--------ccc--chh--hhHHHHHHHhCCceeec
Q 024433 99 --PITAVQMEWSL--------WTR--DIE--EEIIPLCRELGIGIVPY 132 (268)
Q Consensus 99 --~~~~~q~~~n~--------~~~--~~~--~~~~~~~~~~gi~vi~~ 132 (268)
.+...|=-||. ..+ .++ ...++.+++.||.-++.
T Consensus 191 v~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~~Vg~ 238 (469)
T PRK09613 191 IGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEAGIDDVGI 238 (469)
T ss_pred CCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCeeCe
Confidence 34445544542 111 111 56778888888863333
No 35
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=71.70 E-value=31 Score=29.54 Aligned_cols=52 Identities=12% Similarity=0.117 Sum_probs=35.6
Q ss_pred hhHHHHHHHhCCceeecccCCCcccCCcccccCCCCCcccccCCCCCCcchhhhHHHHHHHHHHHHhcCCC
Q 024433 116 EEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVPADSILHFFPRYKGENLDRNKNIYFRIENLAKKYKCT 186 (268)
Q Consensus 116 ~~~~~~~~~~gi~vi~~~pl~~GlL~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s 186 (268)
...+++|+..|...+...|...|.. ......+++....++.+.++|+++|++
T Consensus 93 ~~~i~~a~~lGa~~i~~~~~~~~~~-------------------~~~~~~~~~~~~~l~~l~~~a~~~gv~ 144 (275)
T PRK09856 93 KLAMDMAKEMNAGYTLISAAHAGYL-------------------TPPNVIWGRLAENLSELCEYAENIGMD 144 (275)
T ss_pred HHHHHHHHHhCCCEEEEcCCCCCCC-------------------CCHHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 5678999999999988776543310 001233456667788888999998873
No 36
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=71.52 E-value=35 Score=30.83 Aligned_cols=71 Identities=11% Similarity=-0.057 Sum_probs=55.6
Q ss_pred HHHHHHHHHHcCcee-eeecCCCCHHHHHHHhCCCCeeEecccccccccc-hhhhHHHHHHHhCCceeecccC
Q 024433 65 TIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHGVHPITAVQMEWSLWTRD-IEEEIIPLCRELGIGIVPYSPL 135 (268)
Q Consensus 65 ~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~~~~~~~~~gi~vi~~~pl 135 (268)
-++.+.+|++...+. ..|=|.++...+..++....++++|+.......- ....+.+.|+.+|+.+..++..
T Consensus 202 d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~a~di~~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~ 274 (361)
T cd03322 202 NQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQERLIDYIRTTVSHAGGITPARKIADLASLYGVRTGWHGPT 274 (361)
T ss_pred cHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCeeeccCCC
Confidence 367788888887665 6788888999999999988899999987764422 1268999999999998876543
No 37
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=70.21 E-value=43 Score=30.57 Aligned_cols=86 Identities=14% Similarity=0.253 Sum_probs=57.8
Q ss_pred EEeccCCCC-----------CCHHHHHHHHHHHHHcCc----eeee---ecCCCCHHHHHH---HhCCC------CeeEe
Q 024433 51 YYQHRVDTS-----------VPIEETIGEMKKLVEEGK----IKYI---GLSEASPDTIRR---AHGVH------PITAV 103 (268)
Q Consensus 51 ~~lH~p~~~-----------~~~~~~~~~l~~l~~~G~----ir~i---Gvs~~~~~~l~~---~~~~~------~~~~~ 103 (268)
+-||.|++. .+++++++++.+..++.. +-|+ || |.+.+++.+ +++.. +.-+|
T Consensus 232 iSLHA~~~e~R~~lmPin~~ypl~eLl~a~~~y~~~t~rrit~EYvLi~gv-NDs~e~A~~L~~llk~~~~~~~l~~~VN 310 (371)
T PRK14461 232 ISLHAPDDALRSELMPVNRRYPIADLMAATRDYIAKTRRRVSFEYVLLQGK-NDHPEQAAALARLLRGEAPPGPLLVHVN 310 (371)
T ss_pred EEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhhCCEEEEEEEEECCC-CCCHHHHHHHHHHHcCCccccCCceEEE
Confidence 678988542 357788999888765433 1222 33 555555544 45545 67999
Q ss_pred cccccccccc----hh----hhHHHHHHHhCCceeecccCCC
Q 024433 104 QMEWSLWTRD----IE----EEIIPLCRELGIGIVPYSPLGR 137 (268)
Q Consensus 104 q~~~n~~~~~----~~----~~~~~~~~~~gi~vi~~~pl~~ 137 (268)
.|+||+.... +. ..+.+.++.+||.+..+...+.
T Consensus 311 LIp~Np~~~~~~~~ps~~~i~~F~~~L~~~gi~vtiR~s~G~ 352 (371)
T PRK14461 311 LIPWNPVPGTPLGRSERERVTTFQRILTDYGIPCTVRVERGV 352 (371)
T ss_pred EecCCCCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCc
Confidence 9999996431 11 5677778899999999988764
No 38
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=67.02 E-value=25 Score=29.51 Aligned_cols=81 Identities=14% Similarity=0.239 Sum_probs=50.4
Q ss_pred CHHHHHHHhCCCCeeEec----ccccccccch---hhhHHHHHHHhCCceeecccCCCcccCCcccccCCCCCcccccCC
Q 024433 87 SPDTIRRAHGVHPITAVQ----MEWSLWTRDI---EEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVPADSILHFFP 159 (268)
Q Consensus 87 ~~~~l~~~~~~~~~~~~q----~~~n~~~~~~---~~~~~~~~~~~gi~vi~~~pl~~GlL~g~~~~~~~~~~~~~~~~~ 159 (268)
++.++..+.+...+..+- .+||.+.... ..++..+++.-|-.-+...|+..|--.+.
T Consensus 50 p~a~vka~Aek~Gl~IvSINAlypFn~wt~~~~a~a~~la~yA~acGA~aLvlcPlNd~s~~~~---------------- 113 (272)
T COG4130 50 PAAEVKALAEKAGLTIVSINALYPFNEWTEERVAEARGLADYAAACGAKALVLCPLNDGSWPGT---------------- 113 (272)
T ss_pred CHHHHHHHHHHcCcEEEEeeccccccccChHHHHHHHHHHHHHHhcCCceEEEEeccCCCCCCc----------------
Confidence 445555555444433322 2677666432 27899999999999999999987531111
Q ss_pred CCCCcchhhhHHHHHHHHHHHHhcCCC
Q 024433 160 RYKGENLDRNKNIYFRIENLAKKYKCT 186 (268)
Q Consensus 160 ~~~~~~~~~~~~~~~~l~~la~~~~~s 186 (268)
....+....++.+|+.|-+++|++
T Consensus 114 ---~vr~~~lv~AlkaLkpil~~~gi~ 137 (272)
T COG4130 114 ---AVRREDLVEALKALKPILDEYGIT 137 (272)
T ss_pred ---ccchHHHHHHHHHhhHHHHHhCcc
Confidence 112345566777888888888874
No 39
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=66.36 E-value=13 Score=30.94 Aligned_cols=67 Identities=19% Similarity=0.251 Sum_probs=44.7
Q ss_pred HhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCceeeeecC-CCCHHHHHHHhCCCCeeEeccccc
Q 024433 40 LKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS-EASPDTIRRAHGVHPITAVQMEWS 108 (268)
Q Consensus 40 L~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~~n 108 (268)
+..+|.|++=+.+........+.+ ....+.... .+.+..+||. +.+++.+.++++...++++|+.-+
T Consensus 19 ~~~~Gad~iGfI~~~~S~R~V~~~-~a~~i~~~~-~~~i~~VgVf~~~~~~~i~~~~~~~~~d~vQLHg~ 86 (210)
T PRK01222 19 AAELGADAIGFVFYPKSPRYVSPE-QAAELAAAL-PPFVKVVGVFVNASDEEIDEIVETVPLDLLQLHGD 86 (210)
T ss_pred HHHcCCCEEEEccCCCCCCcCCHH-HHHHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECCC
Confidence 346999999887444322333333 333332222 3568889997 568999999999999999999653
No 40
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=65.76 E-value=40 Score=30.22 Aligned_cols=70 Identities=11% Similarity=0.121 Sum_probs=51.5
Q ss_pred HHHHHHHHHHcCcee-eeecCCCCHHHHHHHhCCCCeeEecccccccccc-hhhhHHHHHHHhCCceeeccc
Q 024433 65 TIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHGVHPITAVQMEWSLWTRD-IEEEIIPLCRELGIGIVPYSP 134 (268)
Q Consensus 65 ~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~~~~~~~~~gi~vi~~~p 134 (268)
.++.+..+++.-.+. ..|=+.+++..+.++++...++++|+.......- ....+...|+.+|+.++..+.
T Consensus 228 ~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~i~~~a~~~g~~~~~~~~ 299 (357)
T cd03316 228 DLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAGAVDIIQPDVTKVGGITEAKKIAALAEAHGVRVAPHGA 299 (357)
T ss_pred CHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCeEeccCC
Confidence 356667777765554 4455667889999999888899999987665422 226899999999999877654
No 41
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=65.65 E-value=45 Score=30.64 Aligned_cols=72 Identities=10% Similarity=0.106 Sum_probs=54.4
Q ss_pred HHHHHHHHHHcCcee-eeecCCCCHHHHHHHhCCCCeeEecccccccccc-hhhhHHHHHHHhCCceeecccCC
Q 024433 65 TIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHGVHPITAVQMEWSLWTRD-IEEEIIPLCRELGIGIVPYSPLG 136 (268)
Q Consensus 65 ~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~~~~~~~~~gi~vi~~~pl~ 136 (268)
.++.+.++++...+- ..|-|.++..++..+++...++++|+.......- ....+...|+.+|+.+...+...
T Consensus 249 d~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~avdil~~d~~~~GGit~~~kia~~A~~~gi~~~~h~~~e 322 (395)
T cd03323 249 GREGMAEFRRATGLPLATNMIVTDFRQLGHAIQLNAVDIPLADHHFWGGMRGSVRVAQVCETWGLGWGMHSNNH 322 (395)
T ss_pred CHHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcCCCcEEeeccccccCHHHHHHHHHHHHHcCCeEEEecCcc
Confidence 467777787776554 5677777888899998888899999987654322 12689999999999998877653
No 42
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=63.61 E-value=97 Score=26.66 Aligned_cols=102 Identities=18% Similarity=0.121 Sum_probs=65.6
Q ss_pred CCHHHHHHHHHHHHhHcCCCcccEEE-eccCCCCC-C----HHHHHHHHHHHHHcCceeeeecCCCCHHHHHHHhCCCCe
Q 024433 27 GTPDYVRSCCEASLKRLDVDYIDLYY-QHRVDTSV-P----IEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVHPI 100 (268)
Q Consensus 27 ~~~~~i~~~~e~SL~~L~~d~iDl~~-lH~p~~~~-~----~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~ 100 (268)
++.+.+.+..++.+ +-|.|.||+-. --+|+... + .+++...++.+++.-.+- +.+-+++++.++++++.+..
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~p-lSIDT~~~~v~e~al~~G~~ 98 (257)
T cd00739 21 LSLDKAVAHAEKMI-AEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVL-ISVDTFRAEVARAALEAGAD 98 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCc-EEEeCCCHHHHHHHHHhCCC
Confidence 45666666655554 66899999964 33454332 2 233445566666653342 89999999999999987532
Q ss_pred eEecccccccccchhhhHHHHHHHhCCceeeccc
Q 024433 101 TAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSP 134 (268)
Q Consensus 101 ~~~q~~~n~~~~~~~~~~~~~~~~~gi~vi~~~p 134 (268)
-+| ..+..... ..+++.++++|..++.+..
T Consensus 99 iIN--disg~~~~--~~~~~l~~~~~~~vV~m~~ 128 (257)
T cd00739 99 IIN--DVSGGSDD--PAMLEVAAEYGAPLVLMHM 128 (257)
T ss_pred EEE--eCCCCCCC--hHHHHHHHHcCCCEEEECC
Confidence 222 33333222 5789999999999999654
No 43
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=62.76 E-value=59 Score=29.91 Aligned_cols=71 Identities=7% Similarity=-0.076 Sum_probs=55.3
Q ss_pred HHHHHHHHHHcCcee-eeecCCCCHHHHHHHhCCCCeeEecccccccccc-hhhhHHHHHHHhCCceeecccC
Q 024433 65 TIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHGVHPITAVQMEWSLWTRD-IEEEIIPLCRELGIGIVPYSPL 135 (268)
Q Consensus 65 ~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~~~~~~~~~gi~vi~~~pl 135 (268)
.++.+.+|++...+. ..|=|.++...+..+++...++++|+.......- ....+...|+.+|+.+..++..
T Consensus 245 d~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~~a~dii~~d~~~~GGit~~~kia~lA~~~gi~~~~h~~~ 317 (404)
T PRK15072 245 NQEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEEQLIDYIRTTVTHAGGITHLRRIADFAALYQVRTGSHGPT 317 (404)
T ss_pred CHHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHcCCCCEEecCccccCcHHHHHHHHHHHHHcCCceeeccCc
Confidence 367788888876555 5677888999999999998899999987765322 1268899999999999876543
No 44
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=62.71 E-value=56 Score=29.55 Aligned_cols=74 Identities=9% Similarity=0.032 Sum_probs=55.1
Q ss_pred HHHHHHHHHHcCcee-eeecCCCCHHHHHHHhCCCCeeEecccccccccc-hhhhHHHHHHHhCCceeecccCCCc
Q 024433 65 TIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHGVHPITAVQMEWSLWTRD-IEEEIIPLCRELGIGIVPYSPLGRG 138 (268)
Q Consensus 65 ~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~~~~~~~~~gi~vi~~~pl~~G 138 (268)
.++.+.++++...+. ..|-|.++...+..++....++++|+.......- ....+...|+.+|+.++..+.+.+|
T Consensus 226 d~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~~~d~~~~d~~~~GGi~~~~~i~~lA~~~gi~~~~~~~~~s~ 301 (368)
T TIGR02534 226 NREALARLTRRFNVPIMADESVTGPADALAIAKASAADVFALKTTKSGGLLESKKIAAIAEAAGIALYGGTMLEGP 301 (368)
T ss_pred cHHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHHHHHHHHHHcCCceeeecchhhH
Confidence 366777787776655 6787888999999998888889999877664322 1268899999999998776555444
No 45
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=61.94 E-value=42 Score=30.26 Aligned_cols=74 Identities=8% Similarity=0.085 Sum_probs=53.3
Q ss_pred HHHHHHHHHHcCcee-eeecCCCCHHHHHHHhCCCCeeEecccccccccc-hhhhHHHHHHHhCCceeecccCCCc
Q 024433 65 TIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHGVHPITAVQMEWSLWTRD-IEEEIIPLCRELGIGIVPYSPLGRG 138 (268)
Q Consensus 65 ~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~~~~~~~~~gi~vi~~~pl~~G 138 (268)
.++.+.+++++..+. ..|=+.++..++..+++...++++|+.......- ....+...|+++|+.++..+-+..|
T Consensus 227 ~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~~~d~~~~d~~~~GGit~~~~~~~~a~~~gi~~~~~~~~~s~ 302 (365)
T cd03318 227 NLDGLARLRSRNRVPIMADESVSGPADAFELARRGAADVFSLKIAKSGGLRRAQKVAAIAEAAGIALYGGTMLESS 302 (365)
T ss_pred cHHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhCCCCeEEEeecccCCHHHHHHHHHHHHHcCCceeecCcchhH
Confidence 366777777765554 5677777888999988888888888876654322 1268889999999998765444433
No 46
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=60.85 E-value=28 Score=30.91 Aligned_cols=87 Identities=16% Similarity=0.144 Sum_probs=63.1
Q ss_pred cEEEeccCCCCCCHHHHHHHHHHHHHcCcee-eeecCCCCHHHHHHHhCCCCeeEecccccccccc-hhhhHHHHHHHhC
Q 024433 49 DLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHGVHPITAVQMEWSLWTRD-IEEEIIPLCRELG 126 (268)
Q Consensus 49 Dl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~~~~~~~~~g 126 (268)
++.++-.|-. .+.++.+.+++++..+. ..|-|.++...+..++.....+++|+..+.+..- ....+...|+.+|
T Consensus 199 ~~~~iEeP~~----~~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~dvi~~d~~~~GGit~~~~~~~~A~~~g 274 (324)
T TIGR01928 199 QLLYIEEPFK----IDDLSMLDELAKGTITPICLDESITSLDDARNLIELGNVKVINIKPGRLGGLTEVQKAIETCREHG 274 (324)
T ss_pred CCcEEECCCC----hhHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcCCCCEEEeCcchhcCHHHHHHHHHHHHHcC
Confidence 4445555432 23467788888776554 5688889999999999999999999987765432 1268899999999
Q ss_pred CceeecccCCCcc
Q 024433 127 IGIVPYSPLGRGF 139 (268)
Q Consensus 127 i~vi~~~pl~~Gl 139 (268)
+.++..+.+..|+
T Consensus 275 i~~~~~~~~es~i 287 (324)
T TIGR01928 275 AKVWIGGMLETGI 287 (324)
T ss_pred CeEEEcceEcccH
Confidence 9998876665553
No 47
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=59.90 E-value=1e+02 Score=26.54 Aligned_cols=106 Identities=14% Similarity=0.198 Sum_probs=60.6
Q ss_pred cCCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCC------CHHHHHHHHHHHHHcCceeeeecCCC---CHHHHHHH
Q 024433 24 IVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSV------PIEETIGEMKKLVEEGKIKYIGLSEA---SPDTIRRA 94 (268)
Q Consensus 24 ~~~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~p~~~~------~~~~~~~~l~~l~~~G~ir~iGvs~~---~~~~l~~~ 94 (268)
...++.+...+-. +.|.++|+|+|++-+........ ...+.++.+..+.+ +..+..+++.. ....+..+
T Consensus 14 ~~~f~~~~~~~ia-~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~l~~a 91 (266)
T cd07944 14 NWDFGDEFVKAIY-RALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSK-GNTKIAVMVDYGNDDIDLLEPA 91 (266)
T ss_pred CccCCHHHHHHHH-HHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhc-cCCEEEEEECCCCCCHHHHHHH
Confidence 4567777555544 66999999999998765532110 11455665555543 23555555433 34555555
Q ss_pred hCCCCeeEecccccccccchhhhHHHHHHHhCCceeec
Q 024433 95 HGVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPY 132 (268)
Q Consensus 95 ~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~vi~~ 132 (268)
.+. .++.+.+.+..-.-..-.+.+++++++|+.+...
T Consensus 92 ~~~-gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~ 128 (266)
T cd07944 92 SGS-VVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFN 128 (266)
T ss_pred hcC-CcCEEEEecccccHHHHHHHHHHHHHCCCeEEEE
Confidence 443 3455544433322222367888898899876543
No 48
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=58.73 E-value=1.5e+02 Score=27.35 Aligned_cols=92 Identities=14% Similarity=0.143 Sum_probs=62.6
Q ss_pred cCCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCceeeeecCCCCHHHHHHHhCCCCeeEe
Q 024433 24 IVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVHPITAV 103 (268)
Q Consensus 24 ~~~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~ 103 (268)
..+.+.+.+.+.+|+-.+ |-+|.+-+|+-- ..+.++.++++|+ ..|+-+..-.-+...+....
T Consensus 134 ~~~mt~d~~~~~ie~qa~----dGVDfmTiH~Gi-------~~~~~~~~~~~~R--~~giVSRGGs~~~~WM~~~~---- 196 (423)
T TIGR00190 134 VEDMDEDDMFRAIEKQAK----DGVDFMTIHAGV-------LLEYVERLKRSGR--ITGIVSRGGAILAAWMLHHH---- 196 (423)
T ss_pred hhhCCHHHHHHHHHHHHH----hCCCEEEEccch-------hHHHHHHHHhCCC--ccCeecCcHHHHHHHHHHcC----
Confidence 356778888888877765 347788899842 3567788888885 57887777666665443222
Q ss_pred cccccccccchhhhHHHHHHHhCCceeecccC
Q 024433 104 QMEWSLWTRDIEEEIIPLCRELGIGIVPYSPL 135 (268)
Q Consensus 104 q~~~n~~~~~~~~~~~~~~~~~gi~vi~~~pl 135 (268)
.=|+|..+. ..+++.|+++++.+---..|
T Consensus 197 --~ENPlye~f-D~lLeI~~~yDVtlSLGDgl 225 (423)
T TIGR00190 197 --KENPLYKNF-DYILEIAKEYDVTLSLGDGL 225 (423)
T ss_pred --CcCchHHHH-HHHHHHHHHhCeeeeccCCc
Confidence 335555553 68999999999987544433
No 49
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=58.45 E-value=46 Score=29.15 Aligned_cols=105 Identities=11% Similarity=0.042 Sum_probs=60.9
Q ss_pred cCCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCceeeeecCCCCHHHHHHHhCCCCeeEe
Q 024433 24 IVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVHPITAV 103 (268)
Q Consensus 24 ~~~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~ 103 (268)
...++.+...+ +-+.|.++|+++|.+-.+..|.......+.++.+..+.+...++..++. .+...++.+++... +.+
T Consensus 20 ~~~~s~e~k~~-ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~~~~~~~~l~-~~~~~ie~A~~~g~-~~v 96 (287)
T PRK05692 20 KRFIPTADKIA-LIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRRPGVTYAALT-PNLKGLEAALAAGA-DEV 96 (287)
T ss_pred CCCcCHHHHHH-HHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhccCCCeEEEEe-cCHHHHHHHHHcCC-CEE
Confidence 34566665544 5566999999999998655554222222335555555443345555544 47777888777522 233
Q ss_pred cccccc--c------ccch------hhhHHHHHHHhCCceee
Q 024433 104 QMEWSL--W------TRDI------EEEIIPLCRELGIGIVP 131 (268)
Q Consensus 104 q~~~n~--~------~~~~------~~~~~~~~~~~gi~vi~ 131 (268)
.+-++. . .... -.+.+++++++|+.+.+
T Consensus 97 ~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~ 138 (287)
T PRK05692 97 AVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRG 138 (287)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 222221 1 1111 15789999999988763
No 50
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=56.57 E-value=75 Score=28.55 Aligned_cols=69 Identities=10% Similarity=0.069 Sum_probs=52.5
Q ss_pred HHHHHHHHHHcCcee-eeecCCCCHHHHHHHhCCCCeeEecccccccccc-hhhhHHHHHHHhCCceeecc
Q 024433 65 TIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHGVHPITAVQMEWSLWTRD-IEEEIIPLCRELGIGIVPYS 133 (268)
Q Consensus 65 ~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~~~~~~~~~gi~vi~~~ 133 (268)
.++.+.+|+++.-+. +.|=|.++...+..++....++++|+.....-.- ....+.+.|+++|+.+...+
T Consensus 215 d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~v~~d~~~~GGit~~~~~~~lA~~~gi~~~~h~ 285 (352)
T cd03325 215 NVEALAEIAARTTIPIATGERLFSRWDFKELLEDGAVDIIQPDISHAGGITELKKIAAMAEAYDVALAPHC 285 (352)
T ss_pred CHHHHHHHHHhCCCCEEecccccCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCcEeccC
Confidence 477788888775554 5677788999999988888889999987655322 22689999999999988654
No 51
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=56.53 E-value=15 Score=26.76 Aligned_cols=55 Identities=24% Similarity=0.164 Sum_probs=42.1
Q ss_pred cCCCCHHHHHHHhCCCCeeEecccccccccc-hhhhHHHHHHHhCCceeecccCCCc
Q 024433 83 LSEASPDTIRRAHGVHPITAVQMEWSLWTRD-IEEEIIPLCRELGIGIVPYSPLGRG 138 (268)
Q Consensus 83 vs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~~~~~~~~~gi~vi~~~pl~~G 138 (268)
=+.++...+.++++...++++|+.....-.- ....+.+.|+++|+.+...+. ..|
T Consensus 2 E~~~~~~~~~~li~~~a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~-~~~ 57 (111)
T PF13378_consen 2 ESLFSLHDFRRLIEAGAVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM-ESG 57 (111)
T ss_dssp TTSSSHHHHHHHHHTTSCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS-SSH
T ss_pred CCCCCHHHHHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC-CCc
Confidence 3567888999999988899999976654321 227899999999999999887 544
No 52
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=55.25 E-value=62 Score=28.94 Aligned_cols=69 Identities=17% Similarity=0.150 Sum_probs=53.2
Q ss_pred HHHHHHHHHHcCcee-eeecCCCCHHHHHHHhCCCCeeEecccccccccc-hhhhHHHHHHHhCCceeecc
Q 024433 65 TIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHGVHPITAVQMEWSLWTRD-IEEEIIPLCRELGIGIVPYS 133 (268)
Q Consensus 65 ~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~~~~~~~~~gi~vi~~~ 133 (268)
.++.+..++++..+. ..|=+.++...+..+++...++++|+..+....- ....+...|+.+|+.+....
T Consensus 210 d~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~a~d~i~~d~~~~GGit~~~~i~~~A~~~g~~~~~h~ 280 (341)
T cd03327 210 DIEGYAELKKATGIPISTGEHEYTVYGFKRLLEGRAVDILQPDVNWVGGITELKKIAALAEAYGVPVVPHA 280 (341)
T ss_pred CHHHHHHHHhcCCCCeEeccCccCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCeecccc
Confidence 467777888876665 5677788999999999988899999987765422 22688999999999977643
No 53
>PRK14017 galactonate dehydratase; Provisional
Probab=54.29 E-value=1e+02 Score=28.11 Aligned_cols=70 Identities=14% Similarity=0.139 Sum_probs=55.2
Q ss_pred HHHHHHHHHcCcee-eeecCCCCHHHHHHHhCCCCeeEecccccccccc-hhhhHHHHHHHhCCceeecccC
Q 024433 66 IGEMKKLVEEGKIK-YIGLSEASPDTIRRAHGVHPITAVQMEWSLWTRD-IEEEIIPLCRELGIGIVPYSPL 135 (268)
Q Consensus 66 ~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~~~~~~~~~gi~vi~~~pl 135 (268)
++.+.+|++...+. ..|=|.++...+..+++...++++|+..+..-.- ....+.+.|+.+||.++..+.+
T Consensus 217 ~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~a~d~v~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~ 288 (382)
T PRK14017 217 AEALPEIAAQTSIPIATGERLFSRWDFKRVLEAGGVDIIQPDLSHAGGITECRKIAAMAEAYDVALAPHCPL 288 (382)
T ss_pred HHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCCCCeEecCccccCCHHHHHHHHHHHHHcCCeEeecCCC
Confidence 67788888877655 5677888999999999988899999987765432 2378999999999998887553
No 54
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=54.19 E-value=1e+02 Score=27.10 Aligned_cols=86 Identities=12% Similarity=0.006 Sum_probs=59.4
Q ss_pred ccEEEeccCCCCCCHHHHHHHHHHHHHcCce-eeeecCCCCHHHHHHHhCCCCeeEecccccccccc-hhhhHHHHHHHh
Q 024433 48 IDLYYQHRVDTSVPIEETIGEMKKLVEEGKI-KYIGLSEASPDTIRRAHGVHPITAVQMEWSLWTRD-IEEEIIPLCREL 125 (268)
Q Consensus 48 iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~i-r~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~~~~~~~~~ 125 (268)
.++.++-.|-+.. +.+..+.++-.+ -..|=|.++...+..+++....+++|+.......- ....+...|+.+
T Consensus 183 ~~i~~iEqP~~~~------~~~~~l~~~~~~Pia~dEs~~~~~d~~~~~~~~~~d~i~ik~~~~GGi~~~~~i~~~a~~~ 256 (307)
T TIGR01927 183 GRIAFLEEPLPDA------DEMSAFSEATGTAIALDESLWELPQLADEYGPGWRGALVIKPAIIGSPAKLRDLAQKAHRL 256 (307)
T ss_pred CCceEEeCCCCCH------HHHHHHHHhCCCCEEeCCCcCChHHHHHHHhcCCCceEEECchhcCCHHHHHHHHHHHHHc
Confidence 3555555554221 456666655332 24677778889999998888888888877764422 227899999999
Q ss_pred CCceeecccCCCcc
Q 024433 126 GIGIVPYSPLGRGF 139 (268)
Q Consensus 126 gi~vi~~~pl~~Gl 139 (268)
|+.++..+.+..|+
T Consensus 257 gi~~~~~~~~es~i 270 (307)
T TIGR01927 257 GLQAVFSSVFESSI 270 (307)
T ss_pred CCCEEEECccchHH
Confidence 99999887776654
No 55
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=53.72 E-value=70 Score=28.91 Aligned_cols=100 Identities=7% Similarity=-0.033 Sum_probs=58.1
Q ss_pred CCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCC---CHHHHHHHHHHHHHcCceeeeecCCCCHHHHHHHhCCCCee
Q 024433 25 VKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSV---PIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVHPIT 101 (268)
Q Consensus 25 ~~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~p~~~~---~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~ 101 (268)
..++.+. +..+-+.|.++|+++|++-..-+|..-. +.+++++.+.. ....++.++. .+...++.+++... +
T Consensus 63 ~~~s~e~-Ki~ia~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~~~i~~---~~~~~~~~l~-~n~~die~A~~~g~-~ 136 (347)
T PLN02746 63 NIVPTSV-KVELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAVRN---LEGARFPVLT-PNLKGFEAAIAAGA-K 136 (347)
T ss_pred CCCCHHH-HHHHHHHHHHcCCCEEEECCCcCcccccccccHHHHHHHHHh---ccCCceeEEc-CCHHHHHHHHHcCc-C
Confidence 4566664 4455567999999999987555553221 23445555543 2234444553 57888888887632 2
Q ss_pred Eeccc---------ccccccchh-----hhHHHHHHHhCCcee
Q 024433 102 AVQME---------WSLWTRDIE-----EEIIPLCRELGIGIV 130 (268)
Q Consensus 102 ~~q~~---------~n~~~~~~~-----~~~~~~~~~~gi~vi 130 (268)
.+.+. .|+-....+ .+.+++++++|+.+.
T Consensus 137 ~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~ 179 (347)
T PLN02746 137 EVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVR 179 (347)
T ss_pred EEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 22222 122111111 478999999998885
No 56
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=53.69 E-value=93 Score=26.81 Aligned_cols=68 Identities=18% Similarity=0.198 Sum_probs=52.3
Q ss_pred CCCHHHHHHHHHHHHhHcCC--------------------------CcccEEEeccCCCCCCH---HHHHHHHHHHHHcC
Q 024433 26 KGTPDYVRSCCEASLKRLDV--------------------------DYIDLYYQHRVDTSVPI---EETIGEMKKLVEEG 76 (268)
Q Consensus 26 ~~~~~~i~~~~e~SL~~L~~--------------------------d~iDl~~lH~p~~~~~~---~~~~~~l~~l~~~G 76 (268)
.++++. ++.++++|++.|. ...|+++|..|....+. .++++.|.+++++|
T Consensus 111 ~~~~~d-~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg 189 (254)
T COG1121 111 RLNKKD-KEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEG 189 (254)
T ss_pred cccHHH-HHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCC
Confidence 344555 7888899999887 56799999999776654 46899999999998
Q ss_pred ceeeeecCCCCHHHHHHHhC
Q 024433 77 KIKYIGLSEASPDTIRRAHG 96 (268)
Q Consensus 77 ~ir~iGvs~~~~~~l~~~~~ 96 (268)
+. |=+.+|+...+.+..+
T Consensus 190 ~t--Il~vtHDL~~v~~~~D 207 (254)
T COG1121 190 KT--VLMVTHDLGLVMAYFD 207 (254)
T ss_pred CE--EEEEeCCcHHhHhhCC
Confidence 74 6677788877776554
No 57
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=53.58 E-value=1.4e+02 Score=27.13 Aligned_cols=95 Identities=12% Similarity=0.130 Sum_probs=56.1
Q ss_pred HcCCCcccEEEeccCCCC-----------CCHHHHHHHHHHHHHc-Cc---eeeeecC--CCCHHH---HHHHhCCCCee
Q 024433 42 RLDVDYIDLYYQHRVDTS-----------VPIEETIGEMKKLVEE-GK---IKYIGLS--EASPDT---IRRAHGVHPIT 101 (268)
Q Consensus 42 ~L~~d~iDl~~lH~p~~~-----------~~~~~~~~~l~~l~~~-G~---ir~iGvs--~~~~~~---l~~~~~~~~~~ 101 (268)
..+...+++ -||.+++. .+++++++++.+...+ |. |+++=+. |.+.++ +.+++...+..
T Consensus 210 ~~~l~~L~i-SLha~~~e~r~~i~p~~~~~~l~~ll~al~~~~~~~~~~v~iey~LI~GvNDs~ed~~~l~~~l~~~~~~ 288 (354)
T PRK14460 210 ESGLAFLAV-SLHAPNQELRERIMPKAARWPLDDLIAALKSYPLKTRERVTFEYLLLGGVNDSLEHARELVRLLSRTKCK 288 (354)
T ss_pred hCCCcEEEE-eCCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhcCCeEEEEEEEECCCCCCHHHHHHHHHHHhcCCCc
Confidence 334333333 57777542 2467788888765443 22 4444332 444444 44455555668
Q ss_pred Eecccccccccc----hh----hhHHHHHHHhCCceeecccCCC
Q 024433 102 AVQMEWSLWTRD----IE----EEIIPLCRELGIGIVPYSPLGR 137 (268)
Q Consensus 102 ~~q~~~n~~~~~----~~----~~~~~~~~~~gi~vi~~~pl~~ 137 (268)
++-++||+.... +. ..+.+..+.+|+.+..+...+.
T Consensus 289 VnLIpyn~~~g~~y~~p~~e~v~~f~~~l~~~Gi~vtir~~~G~ 332 (354)
T PRK14460 289 LNLIVYNPAEGLPYSAPTEERILAFEKYLWSKGITAIIRKSKGQ 332 (354)
T ss_pred EEEEcCCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCC
Confidence 889999986432 11 3456677778999988877764
No 58
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=53.16 E-value=1.3e+02 Score=27.26 Aligned_cols=87 Identities=15% Similarity=0.090 Sum_probs=57.2
Q ss_pred EEEeccCCCC-----------CCHHHHHHHHHHHHHcC--ce--eee---ecCCCCHHH---HHHHhCCCCeeEeccccc
Q 024433 50 LYYQHRVDTS-----------VPIEETIGEMKKLVEEG--KI--KYI---GLSEASPDT---IRRAHGVHPITAVQMEWS 108 (268)
Q Consensus 50 l~~lH~p~~~-----------~~~~~~~~~l~~l~~~G--~i--r~i---Gvs~~~~~~---l~~~~~~~~~~~~q~~~n 108 (268)
.+-||.|++. .+++++++++++..++. +| -|+ || |.+.++ +.+++...+..++.++||
T Consensus 210 avSLha~~~e~R~~i~P~~~~~~l~~l~~al~~y~~~~~rri~~Ey~Li~gv-ND~~e~a~~L~~ll~~~~~~VNLIp~N 288 (345)
T PRK14466 210 AISLHSPFPEQRRELMPAEKAFSIKEIIDLLKNYDFSKQRRVSFEYIVFKGL-NDSLKHAKELVKLLRGIDCRVNLIRFH 288 (345)
T ss_pred EEEcCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHhhCCEEEEEEEEeCCC-CCCHHHHHHHHHHHcCCCceEEEEecC
Confidence 5789988542 34678888888865433 22 223 33 455544 455556667889999999
Q ss_pred cccc-----chh---hhHHHHHHHhCCceeecccCCC
Q 024433 109 LWTR-----DIE---EEIIPLCRELGIGIVPYSPLGR 137 (268)
Q Consensus 109 ~~~~-----~~~---~~~~~~~~~~gi~vi~~~pl~~ 137 (268)
+... ... ..+.+..+++|+.+..+...+.
T Consensus 289 p~~~~~~~~~s~~~~~~F~~~L~~~gi~~tvR~s~G~ 325 (345)
T PRK14466 289 AIPGVDLEGSDMARMEAFRDYLTSHGVFTTIRASRGE 325 (345)
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHHCCCcEEEeCCCCC
Confidence 7433 111 4667778889999999887764
No 59
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=53.15 E-value=86 Score=24.33 Aligned_cols=49 Identities=2% Similarity=0.111 Sum_probs=35.4
Q ss_pred CCHHHHHHHHHHHHhHc--CCCcccEEEeccCCCCCCHHHHHHHHHHHHHc
Q 024433 27 GTPDYVRSCCEASLKRL--DVDYIDLYYQHRVDTSVPIEETIGEMKKLVEE 75 (268)
Q Consensus 27 ~~~~~i~~~~e~SL~~L--~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~ 75 (268)
..+..+++.+.++.... .+...|++++.......++.++.+.|..+.++
T Consensus 60 V~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~~~~f~~L~~~l~~~~~~ 110 (138)
T PRK00730 60 HQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNSQPDFLKLLQDFLQQIPE 110 (138)
T ss_pred hhHHHHHHHHHHHHHHhhcccCCceEEEEeccccCCCHHHHHHHHHHHHHH
Confidence 34677777777777665 23468999999988767777777777666654
No 60
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=52.77 E-value=77 Score=28.31 Aligned_cols=91 Identities=14% Similarity=0.222 Sum_probs=50.9
Q ss_pred hHcCCCcccEEEecc-CCC-CCCHHHHHHHHHHHHHcCceee-eecCC---CCHHHHHHHhCC---CCeeEecccccccc
Q 024433 41 KRLDVDYIDLYYQHR-VDT-SVPIEETIGEMKKLVEEGKIKY-IGLSE---ASPDTIRRAHGV---HPITAVQMEWSLWT 111 (268)
Q Consensus 41 ~~L~~d~iDl~~lH~-p~~-~~~~~~~~~~l~~l~~~G~ir~-iGvs~---~~~~~l~~~~~~---~~~~~~q~~~n~~~ 111 (268)
+.+|.|+||+-+.-. |+. +...++....++...+.=.+=- |..|. -+++.+++.++. .++-.+-+ | .
T Consensus 86 ~~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~~~g~~pLInSa--t--~ 161 (319)
T PRK04452 86 EEYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEAAEGERCLLGSA--E--E 161 (319)
T ss_pred HHhCCCEEEEECCCCCcccccchHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHHhCCCCCEEEEC--C--H
Confidence 478888888876544 221 2233344444444433322222 44442 267777776654 22222211 1 1
Q ss_pred cchhhhHHHHHHHhCCceeecccCC
Q 024433 112 RDIEEEIIPLCRELGIGIVPYSPLG 136 (268)
Q Consensus 112 ~~~~~~~~~~~~~~gi~vi~~~pl~ 136 (268)
.+ -..+.+.|+++|..|++.+|..
T Consensus 162 en-~~~i~~lA~~y~~~Vva~s~~D 185 (319)
T PRK04452 162 DN-YKKIAAAAMAYGHAVIAWSPLD 185 (319)
T ss_pred HH-HHHHHHHHHHhCCeEEEEcHHH
Confidence 12 3789999999999999988664
No 61
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=51.92 E-value=1.5e+02 Score=25.34 Aligned_cols=108 Identities=13% Similarity=0.023 Sum_probs=63.0
Q ss_pred CCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCceeeeecCCCCHHHHHHHhCCCCeeEeccc
Q 024433 27 GTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVHPITAVQME 106 (268)
Q Consensus 27 ~~~~~i~~~~e~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~ 106 (268)
.+.+.+.+..++.++ -|.|+||+-. .|......++..+.+..+++... .-|.|-+++++.++++++...-..+-..
T Consensus 23 ~~~d~~~~~A~~~~~-~GAdiIDIG~--~~~~~~~~ee~~r~v~~i~~~~~-~piSIDT~~~~v~e~aL~~~~G~~iINs 98 (252)
T cd00740 23 EDYDEALDVARQQVE-GGAQILDLNV--DYGGLDGVSAMKWLLNLLATEPT-VPLMLDSTNWEVIEAGLKCCQGKCVVNS 98 (252)
T ss_pred CCHHHHHHHHHHHHH-CCCCEEEECC--CCCCCCHHHHHHHHHHHHHHhcC-CcEEeeCCcHHHHHHHHhhCCCCcEEEe
Confidence 456677777766664 5999999976 34322222232222222322212 2478889999999999886211222233
Q ss_pred cccccc-chhhhHHHHHHHhCCceeecccCCCc
Q 024433 107 WSLWTR-DIEEEIIPLCRELGIGIVPYSPLGRG 138 (268)
Q Consensus 107 ~n~~~~-~~~~~~~~~~~~~gi~vi~~~pl~~G 138 (268)
.+.... .....+++.++++|..++.+..-..|
T Consensus 99 Is~~~~~e~~~~~~~~~~~~~~~vV~m~~~~~g 131 (252)
T cd00740 99 INLEDGEERFLKVARLAKEHGAAVVVLAFDEQG 131 (252)
T ss_pred CCCCCCccccHHHHHHHHHhCCCEEEeccCCCC
Confidence 333321 11257788899999998887654444
No 62
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=51.85 E-value=2e+02 Score=26.68 Aligned_cols=93 Identities=15% Similarity=0.139 Sum_probs=64.3
Q ss_pred cCCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCceeeeecCCCCHHHHHHHhCCCCeeEe
Q 024433 24 IVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVHPITAV 103 (268)
Q Consensus 24 ~~~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~ 103 (268)
..+.+.+.+...+|+-.+ |-+|.+-+|+-- +.+.++.++++|+ ..|+-+..-.-+...+....
T Consensus 137 ~~~mt~d~~~~~ie~qa~----~GVDfmTiHcGi-------~~~~~~~~~~~~R--~~giVSRGGs~~~~WM~~n~---- 199 (431)
T PRK13352 137 VVDMTEDDLFDVIEKQAK----DGVDFMTIHCGV-------TRETLERLKKSGR--IMGIVSRGGSFLAAWMLHNN---- 199 (431)
T ss_pred hhhCCHHHHHHHHHHHHH----hCCCEEEEccch-------hHHHHHHHHhcCC--ccCeecCCHHHHHHHHHHcC----
Confidence 346788888888887775 447889999842 3567788888885 57887777666665543222
Q ss_pred cccccccccchhhhHHHHHHHhCCceeecccCC
Q 024433 104 QMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLG 136 (268)
Q Consensus 104 q~~~n~~~~~~~~~~~~~~~~~gi~vi~~~pl~ 136 (268)
.=|+|..+. ..+++.|+++++.+---..|-
T Consensus 200 --~ENPlye~f-D~lLeI~~~yDVtlSLGDglR 229 (431)
T PRK13352 200 --KENPLYEHF-DYLLEILKEYDVTLSLGDGLR 229 (431)
T ss_pred --CcCchHHHH-HHHHHHHHHhCeeeeccCCcC
Confidence 335555554 799999999999875444333
No 63
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=51.71 E-value=1.4e+02 Score=26.84 Aligned_cols=106 Identities=22% Similarity=0.237 Sum_probs=59.2
Q ss_pred ccCCCCHHHHHHHHHHHHhHcCCCcccEEEe--------c-cCCCCCCHHHHHHHHHHHHHcCceeeeecCC-CCHHHHH
Q 024433 23 VIVKGTPDYVRSCCEASLKRLDVDYIDLYYQ--------H-RVDTSVPIEETIGEMKKLVEEGKIKYIGLSE-ASPDTIR 92 (268)
Q Consensus 23 ~~~~~~~~~i~~~~e~SL~~L~~d~iDl~~l--------H-~p~~~~~~~~~~~~l~~l~~~G~ir~iGvs~-~~~~~l~ 92 (268)
....++.+.+.+-+ +.|.+.|+++|.+-+. . .+... +-.+.++.+.+..+.-++..+-+.+ .+...+.
T Consensus 17 ~~~~f~~~~~~~ia-~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~-~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~ 94 (333)
T TIGR03217 17 IRHQFTIEQVRAIA-AALDEAGVDAIEVTHGDGLGGSSFNYGFSAH-TDLEYIEAAADVVKRAKVAVLLLPGIGTVHDLK 94 (333)
T ss_pred CCCcCCHHHHHHHH-HHHHHcCCCEEEEecCCCCCCccccCCCCCC-ChHHHHHHHHHhCCCCEEEEEeccCccCHHHHH
Confidence 34677788666555 6699999999999632 1 12111 2223333333333333333222222 2566676
Q ss_pred HHhCCCCeeEecccccccccchhhhHHHHHHHhCCceee
Q 024433 93 RAHGVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVP 131 (268)
Q Consensus 93 ~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~vi~ 131 (268)
.+.+. .++.+.+..+.-.-....+.++++++.|+.+..
T Consensus 95 ~a~~~-gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~ 132 (333)
T TIGR03217 95 AAYDA-GARTVRVATHCTEADVSEQHIGMARELGMDTVG 132 (333)
T ss_pred HHHHC-CCCEEEEEeccchHHHHHHHHHHHHHcCCeEEE
Confidence 66654 356666555443333347888999999987654
No 64
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=51.26 E-value=1.2e+02 Score=27.16 Aligned_cols=106 Identities=24% Similarity=0.241 Sum_probs=60.2
Q ss_pred ccCCCCHHHHHHHHHHHHhHcCCCcccEEEeccC--------CCCCCHHHHHHHHHHHHHcCceeeeecC---CCCHHHH
Q 024433 23 VIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRV--------DTSVPIEETIGEMKKLVEEGKIKYIGLS---EASPDTI 91 (268)
Q Consensus 23 ~~~~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~p--------~~~~~~~~~~~~l~~l~~~G~ir~iGvs---~~~~~~l 91 (268)
....++.+.+.+-+ +.|.+.|+++|.+-+.-.. ....+..+.++.+.+.+. ..+...+. ..+...+
T Consensus 18 ~~~~f~~~~~~~i~-~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~~--~~~~~~ll~pg~~~~~dl 94 (337)
T PRK08195 18 VRHQYTLEQVRAIA-RALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVVK--QAKIAALLLPGIGTVDDL 94 (337)
T ss_pred CCCccCHHHHHHHH-HHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhCC--CCEEEEEeccCcccHHHH
Confidence 34677888776666 5699999999999643211 111122334444433332 23333322 2256667
Q ss_pred HHHhCCCCeeEecccccccccchhhhHHHHHHHhCCceeec
Q 024433 92 RRAHGVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPY 132 (268)
Q Consensus 92 ~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~vi~~ 132 (268)
..+.+. .++.+.+..+.-......+.+++++++|+.+...
T Consensus 95 ~~a~~~-gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~ 134 (337)
T PRK08195 95 KMAYDA-GVRVVRVATHCTEADVSEQHIGLARELGMDTVGF 134 (337)
T ss_pred HHHHHc-CCCEEEEEEecchHHHHHHHHHHHHHCCCeEEEE
Confidence 666654 3455555554433333478899999999876654
No 65
>PRK00077 eno enolase; Provisional
Probab=50.32 E-value=1.8e+02 Score=26.99 Aligned_cols=96 Identities=10% Similarity=0.048 Sum_probs=65.2
Q ss_pred CCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcC--ceeeeecCC--CCHHHHHHHhCCCCeeE
Q 024433 27 GTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEG--KIKYIGLSE--ASPDTIRRAHGVHPITA 102 (268)
Q Consensus 27 ~~~~~i~~~~e~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G--~ir~iGvs~--~~~~~l~~~~~~~~~~~ 102 (268)
++++.+...+.+.++. .++.+|-.|-+.. .++.+.+|.++- .+.-.|=-. .++..+.++++....++
T Consensus 261 ~s~~e~~~~~~~l~e~-----y~i~~iEdPl~~~----D~~g~~~L~~~~~~~ipI~gdE~~~t~~~~~~~~i~~~a~d~ 331 (425)
T PRK00077 261 LTSEEMIDYLAELVDK-----YPIVSIEDGLDEN----DWEGWKLLTEKLGDKVQLVGDDLFVTNTKRLKKGIEKGAANS 331 (425)
T ss_pred CCHHHHHHHHHHHHhh-----CCcEEEEcCCCCc----cHHHHHHHHHhcCCCCeEEcCCCccCCHHHHHHHHHhCCCCE
Confidence 4556666666555544 4688888875443 356666666653 454444332 36899999999888899
Q ss_pred ecccccccccch-hhhHHHHHHHhCCceee
Q 024433 103 VQMEWSLWTRDI-EEEIIPLCRELGIGIVP 131 (268)
Q Consensus 103 ~q~~~n~~~~~~-~~~~~~~~~~~gi~vi~ 131 (268)
+|+..|-...-. ..++...|+.+|+.++.
T Consensus 332 v~ik~~~~GGitea~~ia~lA~~~gi~~~v 361 (425)
T PRK00077 332 ILIKVNQIGTLTETLDAIELAKRAGYTAVV 361 (425)
T ss_pred EEeCccccCCHHHHHHHHHHHHHcCCeEEE
Confidence 999887654322 27889999999998665
No 66
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=49.89 E-value=1.6e+02 Score=26.16 Aligned_cols=85 Identities=9% Similarity=0.021 Sum_probs=61.0
Q ss_pred ccEEEeccCCCCCCHHHHHHHHHHHHHcCce-eeeecCCCCHHHHHHHhCCCCeeEecccccccccchhhhHHHHHHHhC
Q 024433 48 IDLYYQHRVDTSVPIEETIGEMKKLVEEGKI-KYIGLSEASPDTIRRAHGVHPITAVQMEWSLWTRDIEEEIIPLCRELG 126 (268)
Q Consensus 48 iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~i-r~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~g 126 (268)
.++.++-.|-+.. .++.+..+++...+ -..|=|.++...+..+++....+++|+.......- ..+...|+.+|
T Consensus 192 ~~i~~iEqP~~~~----~~~~~~~l~~~~~~Pia~DEs~~~~~d~~~~~~~~a~d~v~ik~~k~GGi--~~~~~~a~~~g 265 (320)
T PRK02714 192 GKIEFIEQPLPPD----QFDEMLQLSQDYQTPIALDESVANLAQLQQCYQQGWRGIFVIKPAIAGSP--SRLRQFCQQHP 265 (320)
T ss_pred CCccEEECCCCcc----cHHHHHHHHHhCCCCEEECCccCCHHHHHHHHHcCCCCEEEEcchhcCCH--HHHHHHHHHhC
Confidence 4667777764332 35666677665433 35677888999999999888888888887765442 46778899999
Q ss_pred CceeecccCCCc
Q 024433 127 IGIVPYSPLGRG 138 (268)
Q Consensus 127 i~vi~~~pl~~G 138 (268)
|.++..+.+..|
T Consensus 266 i~~~~~~~~es~ 277 (320)
T PRK02714 266 LDAVFSSVFETA 277 (320)
T ss_pred CCEEEEechhhH
Confidence 999887666544
No 67
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=48.79 E-value=1.1e+02 Score=27.81 Aligned_cols=87 Identities=10% Similarity=0.219 Sum_probs=54.4
Q ss_pred EEeccCCCC-----------CCHHHHHHHHHHHHH-cCc---eeeeecC--CCCHHH---HHHHhCCCCeeEeccccccc
Q 024433 51 YYQHRVDTS-----------VPIEETIGEMKKLVE-EGK---IKYIGLS--EASPDT---IRRAHGVHPITAVQMEWSLW 110 (268)
Q Consensus 51 ~~lH~p~~~-----------~~~~~~~~~l~~l~~-~G~---ir~iGvs--~~~~~~---l~~~~~~~~~~~~q~~~n~~ 110 (268)
+-||.+++. .+++++++++.+..+ .|. |+++=+. |.+.++ +.+++...++.++.++||+.
T Consensus 219 iSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~g~~VtieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPynp~ 298 (355)
T TIGR00048 219 ISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNKTGRRVTFEYVLLDGVNDQVEHAEELAELLKGTKCKVNLIPWNPF 298 (355)
T ss_pred EEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCCCCCHHHHHHHHHHHhcCCCceEEEecccC
Confidence 669998642 236788888877654 332 3333222 334444 45555556678888999986
Q ss_pred ccc----hh----hhHHHHHHHhCCceeecccCCC
Q 024433 111 TRD----IE----EEIIPLCRELGIGIVPYSPLGR 137 (268)
Q Consensus 111 ~~~----~~----~~~~~~~~~~gi~vi~~~pl~~ 137 (268)
... +. ..+.++.+++|+.+..+...+.
T Consensus 299 ~~~~~~~ps~e~i~~f~~~L~~~gi~v~iR~~~G~ 333 (355)
T TIGR00048 299 PEADYERPSNEQIDRFAKTLMSYGFTVTIRKSRGD 333 (355)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCc
Confidence 431 11 3456667778999999888764
No 68
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=48.73 E-value=1.4e+02 Score=26.73 Aligned_cols=83 Identities=12% Similarity=0.120 Sum_probs=58.4
Q ss_pred cEEEeccCCCCCCHHHHHHHHHHHHHcCcee-eeecCCCCHHHHHHHhCCCCeeEecccccccccchhhhHHHHHHHhCC
Q 024433 49 DLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHGVHPITAVQMEWSLWTRDIEEEIIPLCRELGI 127 (268)
Q Consensus 49 Dl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi 127 (268)
++.++-.|-.. ++.|.+++++-.+. +.|=|.++...+.+++.....+++|+..+.+..- .+.+..|+.+||
T Consensus 162 ~l~~iEqP~~~------~~~la~Lr~~~~vPIA~DEs~~~~~d~~~l~~~~a~dvi~ik~~~~GGi--t~~lkiA~~~gi 233 (327)
T PRK02901 162 PLEYVEQPCAT------VEELAELRRRVGVPIAADESIRRAEDPLRVARAGAADVAVLKVAPLGGV--RAALDIAEQIGL 233 (327)
T ss_pred CceEEecCCCC------HHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEEeCcchhCCH--HHHHHHHHHcCC
Confidence 45555555321 56666666653332 4566777888888888888899999988776543 467778999999
Q ss_pred ceeecccCCCcc
Q 024433 128 GIVPYSPLGRGF 139 (268)
Q Consensus 128 ~vi~~~pl~~Gl 139 (268)
.++..+.+..++
T Consensus 234 ~v~v~s~~es~i 245 (327)
T PRK02901 234 PVVVSSALDTSV 245 (327)
T ss_pred cEEEeCCcccHH
Confidence 998887776553
No 69
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=48.30 E-value=75 Score=28.49 Aligned_cols=86 Identities=17% Similarity=0.097 Sum_probs=58.8
Q ss_pred cEEEeccCCCCCCHHHHHHHHHHHHHcCc-eeeeecCCCCHHHHHHHhCCCCeeEecccccccccc-hhhhHHHHHHHhC
Q 024433 49 DLYYQHRVDTSVPIEETIGEMKKLVEEGK-IKYIGLSEASPDTIRRAHGVHPITAVQMEWSLWTRD-IEEEIIPLCRELG 126 (268)
Q Consensus 49 Dl~~lH~p~~~~~~~~~~~~l~~l~~~G~-ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~~~~~~~~~g 126 (268)
++.++-.|-.. +.++.+.++++.-. =-+.|=|.++...+..+++...++++|+..+....- ....+...|+.+|
T Consensus 204 ~i~~iEeP~~~----~d~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~~~ik~~~~GGit~~~~i~~~A~~~g 279 (354)
T cd03317 204 GLLMIEQPLAA----DDLIDHAELQKLLKTPICLDESIQSAEDARKAIELGACKIINIKPGRVGGLTEALKIHDLCQEHG 279 (354)
T ss_pred CccEEECCCCh----hHHHHHHHHHhhcCCCEEeCCccCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcC
Confidence 45555554322 23566677766533 235677888999999999988899999987665432 2268899999999
Q ss_pred CceeecccCCCc
Q 024433 127 IGIVPYSPLGRG 138 (268)
Q Consensus 127 i~vi~~~pl~~G 138 (268)
+.++..+.+..|
T Consensus 280 i~~~~g~~~es~ 291 (354)
T cd03317 280 IPVWCGGMLESG 291 (354)
T ss_pred CcEEecCcccch
Confidence 998775555433
No 70
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=48.25 E-value=1.4e+02 Score=27.25 Aligned_cols=89 Identities=12% Similarity=0.138 Sum_probs=59.0
Q ss_pred EEEeccCCCC-----------CCHHHHHHHHHHHH-HcCc---eeeeecC--CCCHHH---HHHHhCCC---CeeEeccc
Q 024433 50 LYYQHRVDTS-----------VPIEETIGEMKKLV-EEGK---IKYIGLS--EASPDT---IRRAHGVH---PITAVQME 106 (268)
Q Consensus 50 l~~lH~p~~~-----------~~~~~~~~~l~~l~-~~G~---ir~iGvs--~~~~~~---l~~~~~~~---~~~~~q~~ 106 (268)
.+-||.+++. .+++++++++.+.. +.|+ |.|+=+. |.+.++ +.+++... ...++.++
T Consensus 241 avSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLIp 320 (373)
T PRK14459 241 AVSLHAPDDELRDELVPVNTRWKVDEVLDAARYYADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLIP 320 (373)
T ss_pred EEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEEc
Confidence 3678888652 34678899977776 4454 4455333 334443 45555554 67899999
Q ss_pred ccccccc----hh----hhHHHHHHHhCCceeecccCCCc
Q 024433 107 WSLWTRD----IE----EEIIPLCRELGIGIVPYSPLGRG 138 (268)
Q Consensus 107 ~n~~~~~----~~----~~~~~~~~~~gi~vi~~~pl~~G 138 (268)
||+.... +. ..+.+..+++||.+..+...+..
T Consensus 321 yNp~~~~~y~~~~~~~~~~F~~~L~~~gi~~tiR~~~G~d 360 (373)
T PRK14459 321 LNPTPGSKWTASPPEVEREFVRRLRAAGVPCTVRDTRGQE 360 (373)
T ss_pred cCCCCCCCCcCCCHHHHHHHHHHHHHCCCeEEeeCCCCcC
Confidence 9996531 11 56778888999999998887643
No 71
>PF11242 DUF2774: Protein of unknown function (DUF2774); InterPro: IPR021404 This entry is represented by Bacteriophage T4, Gp24.3; it is a family of uncharacterised viral proteins.
Probab=48.15 E-value=26 Score=23.06 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhc
Q 024433 175 RIENLAKKYKCTSAQLALAWVLG 197 (268)
Q Consensus 175 ~l~~la~~~~~s~~qlal~~~l~ 197 (268)
..-+||+++|+++.++|..|+.-
T Consensus 15 ~FveIAr~~~i~a~e~a~~w~~V 37 (63)
T PF11242_consen 15 SFVEIARKIGITAKEVAKAWAEV 37 (63)
T ss_pred cHHHHHHHhCCCHHHHHHHHHHH
Confidence 47789999999999999999853
No 72
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=47.59 E-value=99 Score=28.19 Aligned_cols=88 Identities=15% Similarity=0.181 Sum_probs=57.3
Q ss_pred EEEeccCCC------------CCCHHHHHHHHHH-HHHcC---ceeeeecC--CCCH---HHHHHHhCCCCeeEeccccc
Q 024433 50 LYYQHRVDT------------SVPIEETIGEMKK-LVEEG---KIKYIGLS--EASP---DTIRRAHGVHPITAVQMEWS 108 (268)
Q Consensus 50 l~~lH~p~~------------~~~~~~~~~~l~~-l~~~G---~ir~iGvs--~~~~---~~l~~~~~~~~~~~~q~~~n 108 (268)
.+-||.+++ ..+++++++++.+ +.+.| +|+++=+. |.+. ..+.+++...+..++.++||
T Consensus 237 aiSL~a~~~e~r~~i~P~~~~~~~l~~l~~~i~~~~~~~g~~V~ieyvLI~GvNDs~eda~~L~~~l~~~~~~VnlIpyn 316 (368)
T PRK14456 237 AVSLHSADQEKRERLMPQAARDYPLDELREALIGYASKTGEPVTLVYMLLEGINDSPEDARKLIRFASRFFCKINLIDYN 316 (368)
T ss_pred EEEecCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHhcCCeEEEEEEEEcCCCCCHHHHHHHHHHHhcCCCeeEEeeec
Confidence 366787633 2356788888875 44555 34455333 3444 44555555566788889999
Q ss_pred ccccch--------hhhHHHHHHHhCCceeecccCCC
Q 024433 109 LWTRDI--------EEEIIPLCRELGIGIVPYSPLGR 137 (268)
Q Consensus 109 ~~~~~~--------~~~~~~~~~~~gi~vi~~~pl~~ 137 (268)
++.... -..+.+..+++|+.+..+...+.
T Consensus 317 ~~~~~~~~~ps~e~i~~F~~~L~~~Gi~vtvR~~~G~ 353 (368)
T PRK14456 317 SIVNIKFEPVCSSTRERFRDRLLDAGLQVTVRKSYGT 353 (368)
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHCCCcEEeeCCCCc
Confidence 875421 15677778889999999888764
No 73
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=46.63 E-value=1.5e+02 Score=26.73 Aligned_cols=87 Identities=14% Similarity=0.157 Sum_probs=55.1
Q ss_pred EEeccCCCC-----------CCHHHHHHHHHHHHHcC--c--eeeeecC--CCCHHHH---HHHhCCCCeeEeccccccc
Q 024433 51 YYQHRVDTS-----------VPIEETIGEMKKLVEEG--K--IKYIGLS--EASPDTI---RRAHGVHPITAVQMEWSLW 110 (268)
Q Consensus 51 ~~lH~p~~~-----------~~~~~~~~~l~~l~~~G--~--ir~iGvs--~~~~~~l---~~~~~~~~~~~~q~~~n~~ 110 (268)
+-||.+++. .+++++++++.+....+ . ++|+=+. |.+.+++ .+++...+..++-++||+.
T Consensus 211 iSL~a~~~e~r~~I~pink~~~l~~l~~a~~~~~~~~~~~v~ieyvLI~GvNDs~e~~~~L~~ll~~l~~~vnlIPyn~~ 290 (349)
T PRK14463 211 VSLNATTDEVRDRIMPVNRRYPLAELLAACKAFPLPGRRKITIEYVMIRGLNDSLEDAKRLVRLLSDIPSKVNLIPFNEH 290 (349)
T ss_pred EeCCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhccCceEEEEecCCC
Confidence 458887542 23567788877766644 2 3444333 3444554 4445556678888999987
Q ss_pred ccc----hh----hhHHHHHHHhCCceeecccCCC
Q 024433 111 TRD----IE----EEIIPLCRELGIGIVPYSPLGR 137 (268)
Q Consensus 111 ~~~----~~----~~~~~~~~~~gi~vi~~~pl~~ 137 (268)
... +. ..+....+++||.+..+...+.
T Consensus 291 ~~~~~~~ps~e~i~~f~~~L~~~gi~v~vR~~~G~ 325 (349)
T PRK14463 291 EGCDFRSPTQEAIDRFHKYLLDKHVTVITRSSRGS 325 (349)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCc
Confidence 431 11 4566677789999999988764
No 74
>PLN00191 enolase
Probab=44.74 E-value=2.3e+02 Score=26.68 Aligned_cols=98 Identities=10% Similarity=0.099 Sum_probs=69.9
Q ss_pred CCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCceeeeecC--CCCHHHHHHHhCCCCeeEec
Q 024433 27 GTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS--EASPDTIRRAHGVHPITAVQ 104 (268)
Q Consensus 27 ~~~~~i~~~~e~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGvs--~~~~~~l~~~~~~~~~~~~q 104 (268)
.+++.+.+-+.+.++ ..++.+|-.|-.. +.|+.+.++.++.++.-+|=- ..++..+.++++....++++
T Consensus 295 ~s~~e~i~~~~~L~~-----~y~I~~IEDPl~~----~D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~~aad~i~ 365 (457)
T PLN00191 295 KSGDELIDLYKEFVS-----DYPIVSIEDPFDQ----DDWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQEKACNALL 365 (457)
T ss_pred cCHHHHHHHHHHHhh-----cCCcEEEECCCCc----ccHHHHHHHHccCCCcEEccCcccCCHHHHHHHHHhCCCCEEE
Confidence 466666666655543 3467788887543 346677778888888766622 35789999999988889999
Q ss_pred ccccccccch-hhhHHHHHHHhCCceeecc
Q 024433 105 MEWSLWTRDI-EEEIIPLCRELGIGIVPYS 133 (268)
Q Consensus 105 ~~~n~~~~~~-~~~~~~~~~~~gi~vi~~~ 133 (268)
+..|-...-. ..++...|+.+|+.++..+
T Consensus 366 iKl~qiGGITea~~~a~lA~~~G~~~~ish 395 (457)
T PLN00191 366 LKVNQIGTVTESIEAVKMSKAAGWGVMTSH 395 (457)
T ss_pred ecccccCCHHHHHHHHHHHHHCCCEEEeCC
Confidence 9887554322 2688999999999987744
No 75
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=44.68 E-value=2.1e+02 Score=25.97 Aligned_cols=85 Identities=13% Similarity=0.135 Sum_probs=53.8
Q ss_pred eccCCCC-----------CCHHHHHHHHHHHH-HcCc---eeeeecC--CCCHHHHH---HHhCCCCeeEeccccccccc
Q 024433 53 QHRVDTS-----------VPIEETIGEMKKLV-EEGK---IKYIGLS--EASPDTIR---RAHGVHPITAVQMEWSLWTR 112 (268)
Q Consensus 53 lH~p~~~-----------~~~~~~~~~l~~l~-~~G~---ir~iGvs--~~~~~~l~---~~~~~~~~~~~q~~~n~~~~ 112 (268)
||.+++. .++++++++++... +.|+ |+|+=+. |.+.+++. +++...+..++.++||+...
T Consensus 226 Lha~d~e~r~~l~pv~~~~~l~~ll~~l~~y~~~~~~~i~ieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPyn~~~~ 305 (356)
T PRK14462 226 LHAVDDELRSELMPINKAYNIESIIDAVRKFPIDQRKRVMFEYLVIKDVNDDLKSAKKLVKLLNGIKAKVNLILFNPHEG 305 (356)
T ss_pred CCCCCHHHHHHhCCCCccCCHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhhcCcEEEEEeCCCCCC
Confidence 8998653 23467888877554 4443 4555443 44555544 44455567899999998753
Q ss_pred ----chh----hhHHHHHHHhCCceeecccCCC
Q 024433 113 ----DIE----EEIIPLCRELGIGIVPYSPLGR 137 (268)
Q Consensus 113 ----~~~----~~~~~~~~~~gi~vi~~~pl~~ 137 (268)
.+. ..+.+..+++|+.+..+...+.
T Consensus 306 ~~~~~ps~e~i~~f~~~l~~~gi~vtvR~~~G~ 338 (356)
T PRK14462 306 SKFERPSLEDMIKFQDYLNSKGLLCTIRESKGL 338 (356)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCC
Confidence 122 3455566778999988877764
No 76
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=43.94 E-value=2.3e+02 Score=25.12 Aligned_cols=109 Identities=15% Similarity=0.111 Sum_probs=58.7
Q ss_pred CHHHHHHHHHHHHhHcCCCcccEEEeccCCCCC-CHHHHHHHHHHHHHcCceeeeecCC---------CCHHHHHHHhCC
Q 024433 28 TPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSV-PIEETIGEMKKLVEEGKIKYIGLSE---------ASPDTIRRAHGV 97 (268)
Q Consensus 28 ~~~~i~~~~e~SL~~L~~d~iDl~~lH~p~~~~-~~~~~~~~l~~l~~~G~ir~iGvs~---------~~~~~l~~~~~~ 97 (268)
+.+.+.+.++......++ -+++ |-.-++.. ....+.+.++.+++-|.++.+.+.+ .+.+.+..+.+.
T Consensus 120 ~~~e~~~~i~~i~~~~~I--~~Vi-lSGGDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~ 196 (321)
T TIGR03822 120 SPAELDAAFAYIADHPEI--WEVI-LTGGDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTS 196 (321)
T ss_pred CHHHHHHHHHHHHhCCCc--cEEE-EeCCCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHc
Confidence 445555555543333332 2333 33333332 2456777788888888776444433 233334444443
Q ss_pred CCeeEeccccccccc--chhhhHHHHHHHhCCceeecccCCCcc
Q 024433 98 HPITAVQMEWSLWTR--DIEEEIIPLCRELGIGIVPYSPLGRGF 139 (268)
Q Consensus 98 ~~~~~~q~~~n~~~~--~~~~~~~~~~~~~gi~vi~~~pl~~Gl 139 (268)
....++.+..|-... ......++.+++.||.+...+++..|.
T Consensus 197 g~~v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~v~~q~vLl~gv 240 (321)
T TIGR03822 197 GKTVYVALHANHARELTAEARAACARLIDAGIPMVSQSVLLRGV 240 (321)
T ss_pred CCcEEEEecCCChhhcCHHHHHHHHHHHHcCCEEEEEeeEeCCC
Confidence 322334444432111 112567788889999999999998774
No 77
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=43.73 E-value=2.1e+02 Score=24.55 Aligned_cols=100 Identities=16% Similarity=0.114 Sum_probs=65.5
Q ss_pred CCHHHHHHHHHHHHhHcCCCcccEEE-eccCCCCC-CH----HHHHHHHHHHHHc-CceeeeecCCCCHHHHHHHhCCCC
Q 024433 27 GTPDYVRSCCEASLKRLDVDYIDLYY-QHRVDTSV-PI----EETIGEMKKLVEE-GKIKYIGLSEASPDTIRRAHGVHP 99 (268)
Q Consensus 27 ~~~~~i~~~~e~SL~~L~~d~iDl~~-lH~p~~~~-~~----~~~~~~l~~l~~~-G~ir~iGvs~~~~~~l~~~~~~~~ 99 (268)
.+++.+.+..++.+ .-|.++||+-- --+|+... +. +++...++.+++. +. -+.+-+++++.++++++.+.
T Consensus 20 ~~~~~~~~~a~~~~-~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~--plsiDT~~~~vi~~al~~G~ 96 (257)
T TIGR01496 20 LSVDKAVAHAERML-EEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDV--PISVDTYRAEVARAALEAGA 96 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC--eEEEeCCCHHHHHHHHHcCC
Confidence 46677777765554 67999999942 22343321 22 2356666666665 43 48999999999999998754
Q ss_pred eeEecccccccccchhhhHHHHHHHhCCceeeccc
Q 024433 100 ITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSP 134 (268)
Q Consensus 100 ~~~~q~~~n~~~~~~~~~~~~~~~~~gi~vi~~~p 134 (268)
.-+|-+ +... ..++++.++++|..++.+.-
T Consensus 97 ~iINsi--s~~~---~~~~~~l~~~~~~~vV~m~~ 126 (257)
T TIGR01496 97 DIINDV--SGGQ---DPAMLEVAAEYGVPLVLMHM 126 (257)
T ss_pred CEEEEC--CCCC---CchhHHHHHHcCCcEEEEeC
Confidence 333333 2222 36788999999999998653
No 78
>PRK13796 GTPase YqeH; Provisional
Probab=43.50 E-value=2.5e+02 Score=25.41 Aligned_cols=82 Identities=13% Similarity=0.192 Sum_probs=57.3
Q ss_pred CCcEEEEecccccCCCCCCccCCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCceeeeec
Q 024433 4 REKVQIATKFGVVGLRDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGL 83 (268)
Q Consensus 4 R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGv 83 (268)
+.-++|.+|.-..+. ....+.+...++...+.+|....|++++..-. ...++++++.+.+..+.+.+-.+|.
T Consensus 97 kpviLViNK~DLl~~-------~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~-g~gI~eL~~~I~~~~~~~~v~vvG~ 168 (365)
T PRK13796 97 NPVLLVGNKADLLPK-------SVKKNKVKNWLRQEAKELGLRPVDVVLISAQK-GHGIDELLEAIEKYREGRDVYVVGV 168 (365)
T ss_pred CCEEEEEEchhhCCC-------ccCHHHHHHHHHHHHHhcCCCcCcEEEEECCC-CCCHHHHHHHHHHhcCCCeEEEEcC
Confidence 455789999865321 12356666666777777887656788776543 4467888888888877788888999
Q ss_pred CCCCHHHHHH
Q 024433 84 SEASPDTIRR 93 (268)
Q Consensus 84 s~~~~~~l~~ 93 (268)
+|..-.-+.-
T Consensus 169 ~NvGKSTLiN 178 (365)
T PRK13796 169 TNVGKSTLIN 178 (365)
T ss_pred CCCcHHHHHH
Confidence 9997655433
No 79
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=43.18 E-value=1.3e+02 Score=26.98 Aligned_cols=67 Identities=10% Similarity=0.020 Sum_probs=49.1
Q ss_pred HHHHHHHHHHcCcee-eeecCCCCHHHHHHHhCCCCeeEecccccccccc-hhhhHHHHHHHhCCceee
Q 024433 65 TIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHGVHPITAVQMEWSLWTRD-IEEEIIPLCRELGIGIVP 131 (268)
Q Consensus 65 ~~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~~~~~~~~~gi~vi~ 131 (268)
.++.+.++++..-|. ..|=+.+++.++..+++...++++|+..+....- ....+...|+.+|+.++.
T Consensus 225 d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~~~~d~i~~~~~~~GGit~~~~ia~~A~~~gi~~~~ 293 (355)
T cd03321 225 DYEGHARIASALRTPVQMGENWLGPEEMFKALSAGACDLVMPDLMKIGGVTGWLRASALAEQAGIPMSS 293 (355)
T ss_pred CHHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHhCCCCeEecCHhhhCCHHHHHHHHHHHHHcCCeecc
Confidence 356677777764332 4566778899999998888899999887765432 126889999999999754
No 80
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=43.17 E-value=2.2e+02 Score=24.51 Aligned_cols=74 Identities=19% Similarity=0.135 Sum_probs=58.3
Q ss_pred ccCCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCC-CHHHHHHHHHHHHHcCceeeeecCCCCHHHHHHHhCC
Q 024433 23 VIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSV-PIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGV 97 (268)
Q Consensus 23 ~~~~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~p~~~~-~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~ 97 (268)
+..+++++...+-.+-..+-++++.|-|=.+..+.... +..+++++.++|+++|.+- +=+++-++....++.+.
T Consensus 69 TaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~v-lpyc~dd~~~ar~l~~~ 143 (248)
T cd04728 69 TAGCRTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTV-LPYCTDDPVLAKRLEDA 143 (248)
T ss_pred CCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHHc
Confidence 45678899999999999999999999999998877654 5789999999999999973 33455566665555554
No 81
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=42.94 E-value=1.7e+02 Score=23.26 Aligned_cols=87 Identities=18% Similarity=0.153 Sum_probs=53.2
Q ss_pred EEeccCCCCCCHHHHHHHHHHHHHcCceeeeecCCCCHHHHHHHhCCC--CeeEecccccccccc-----hhhhHHHHHH
Q 024433 51 YYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVH--PITAVQMEWSLWTRD-----IEEEIIPLCR 123 (268)
Q Consensus 51 ~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~--~~~~~q~~~n~~~~~-----~~~~~~~~~~ 123 (268)
+++..|... ..+++++..-+--+++-|+++=|++.+-.-..++++.. .+.++-+.|+.-... .+.++-+..+
T Consensus 2 ~yf~~pG~e-NT~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~ 80 (186)
T COG1751 2 VYFEKPGKE-NTDETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEGDLKVVVVTHHAGFEEKGTQEMDEEVRKELK 80 (186)
T ss_pred ccccCCccc-chHHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcccCceEEEEEeecccccCCceecCHHHHHHHH
Confidence 345555433 35667776555556667888877666555555544432 244555666654432 3478889999
Q ss_pred HhCCceeecccCCCc
Q 024433 124 ELGIGIVPYSPLGRG 138 (268)
Q Consensus 124 ~~gi~vi~~~pl~~G 138 (268)
++|..+..-+-..+|
T Consensus 81 erGa~v~~~sHalSg 95 (186)
T COG1751 81 ERGAKVLTQSHALSG 95 (186)
T ss_pred HcCceeeeehhhhhc
Confidence 999988875554444
No 82
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=42.90 E-value=2.1e+02 Score=24.47 Aligned_cols=107 Identities=18% Similarity=0.178 Sum_probs=60.1
Q ss_pred cCCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCC-----CCCHHHHHHHHHHHHHc-CceeeeecC---CCCHHHHHHH
Q 024433 24 IVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDT-----SVPIEETIGEMKKLVEE-GKIKYIGLS---EASPDTIRRA 94 (268)
Q Consensus 24 ~~~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~p~~-----~~~~~~~~~~l~~l~~~-G~ir~iGvs---~~~~~~l~~~ 94 (268)
...++.+...+-+ +.|.++|+++|.+-+...... .......++.++.+++. +..+...+. ......++.+
T Consensus 16 ~~~~~~~~k~~i~-~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~a 94 (263)
T cd07943 16 RHQFTLEQVRAIA-RALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVLLLPGIGTVDDLKMA 94 (263)
T ss_pred CeecCHHHHHHHH-HHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCCEEEEEecCCccCHHHHHHH
Confidence 3456667555555 569999999999986532110 00111234555555432 335555443 2245666666
Q ss_pred hCCCCeeEecccccccccchhhhHHHHHHHhCCceeec
Q 024433 95 HGVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPY 132 (268)
Q Consensus 95 ~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~vi~~ 132 (268)
.+. .++.+.+..+.-+.+.-.+.+++++++|+.+...
T Consensus 95 ~~~-g~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~ 131 (263)
T cd07943 95 ADL-GVDVVRVATHCTEADVSEQHIGAARKLGMDVVGF 131 (263)
T ss_pred HHc-CCCEEEEEechhhHHHHHHHHHHHHHCCCeEEEE
Confidence 654 4555555443322222367888999999876543
No 83
>PHA02128 hypothetical protein
Probab=42.89 E-value=85 Score=23.16 Aligned_cols=70 Identities=14% Similarity=0.236 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHcCceeeeecCCCCHHHHHHHhCC------------------CCeeEecc---cccccccchhhhHHHH
Q 024433 63 EETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGV------------------HPITAVQM---EWSLWTRDIEEEIIPL 121 (268)
Q Consensus 63 ~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~------------------~~~~~~q~---~~n~~~~~~~~~~~~~ 121 (268)
..++....++..+|-+|-|-+...+-.++..++.. +.+.+.++ +|.+..++...++.+|
T Consensus 60 ~gl~~lane~~aqgg~r~itmn~ankrhv~dmv~~~wrgdi~ist~selt~~cp~vkflmideseytltsrh~rqeiydw 139 (151)
T PHA02128 60 TGLLHLANEVSAQGGARIITMNSANKRHVQDMVSYQWRGDIRISTISELTDRCPKVKFLMIDESEYTLTSRHQRQEIYDW 139 (151)
T ss_pred chHHHHHHHHHhcCCeEEEEeccchhhHHHHHhcccccCceEEeeHHHHhccCCeeEEEEEcchhceecchhhHHHHHhh
Confidence 46778888999999999999988877776665432 33445555 5777666656899999
Q ss_pred HHHhCCceeec
Q 024433 122 CRELGIGIVPY 132 (268)
Q Consensus 122 ~~~~gi~vi~~ 132 (268)
+-.+|+.++.+
T Consensus 140 agthgvefvim 150 (151)
T PHA02128 140 AGTHGVEFVIM 150 (151)
T ss_pred cccCceEEEEe
Confidence 99999987654
No 84
>PLN02363 phosphoribosylanthranilate isomerase
Probab=42.74 E-value=69 Score=27.59 Aligned_cols=66 Identities=21% Similarity=0.339 Sum_probs=43.8
Q ss_pred hHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCceeeeecC-CCCHHHHHHHhCCCCeeEecccc
Q 024433 41 KRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS-EASPDTIRRAHGVHPITAVQMEW 107 (268)
Q Consensus 41 ~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~~ 107 (268)
.++|.|++=+.+........+.+ ....+........++.+||. +.+++.+.++++...++++|+.-
T Consensus 64 ~~~GaD~iGfIf~~~SpR~Vs~e-~a~~I~~~l~~~~~~~VgVfv~~~~~~I~~~~~~~~ld~VQLHG 130 (256)
T PLN02363 64 VEAGADFIGMILWPKSKRSISLS-VAKEISQVAREGGAKPVGVFVDDDANTILRAADSSDLELVQLHG 130 (256)
T ss_pred HHcCCCEEEEecCCCCCCcCCHH-HHHHHHHhccccCccEEEEEeCCCHHHHHHHHHhcCCCEEEECC
Confidence 36999999987544322233333 33333333333236679985 77999999999999999999964
No 85
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=42.67 E-value=2.5e+02 Score=25.39 Aligned_cols=91 Identities=12% Similarity=0.192 Sum_probs=57.7
Q ss_pred cccEEEeccCCCC-----------CCHHHHHHHHHH-HHHcCc---eeeeecC--CCCHHH---HHHHhCCCCeeEeccc
Q 024433 47 YIDLYYQHRVDTS-----------VPIEETIGEMKK-LVEEGK---IKYIGLS--EASPDT---IRRAHGVHPITAVQME 106 (268)
Q Consensus 47 ~iDl~~lH~p~~~-----------~~~~~~~~~l~~-l~~~G~---ir~iGvs--~~~~~~---l~~~~~~~~~~~~q~~ 106 (268)
....+-||.+++. .+++++++++.+ +.+.|+ ++++=+. |.+.++ +.+++...+..++.++
T Consensus 212 ~~laiSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~y~~~~gr~I~iey~LIpGvNDs~e~a~~La~~l~~l~~~VnLIP 291 (345)
T PRK14457 212 FTLAVSLHAPNQKLRETLIPSAKNYPIENLLEDCRHYVAITGRRVSFEYILLGGVNDLPEHAEELANLLRGFQSHVNLIP 291 (345)
T ss_pred eEEEEEeCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCcCCCHHHHHHHHHHHhcCCCeEEEec
Confidence 3467889998553 236677777766 445553 4555343 445555 4445555566889999
Q ss_pred ccccccc----hh----hhHHHHHHHhCCceeecccCCC
Q 024433 107 WSLWTRD----IE----EEIIPLCRELGIGIVPYSPLGR 137 (268)
Q Consensus 107 ~n~~~~~----~~----~~~~~~~~~~gi~vi~~~pl~~ 137 (268)
||++... +. ..+.+..+.+|+.+......+.
T Consensus 292 ynp~~~~~~~~ps~e~i~~f~~~L~~~Gi~vtvR~~~G~ 330 (345)
T PRK14457 292 YNPIDEVEFQRPSPKRIQAFQRVLEQRGVAVSVRASRGL 330 (345)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCC
Confidence 9987431 12 3456667778999988877764
No 86
>PF14502 HTH_41: Helix-turn-helix domain
Probab=42.58 E-value=21 Score=22.26 Aligned_cols=29 Identities=21% Similarity=0.252 Sum_probs=24.8
Q ss_pred HHHHHHHHhcCCC--HHHHHHHHHhcCCCCe
Q 024433 174 FRIENLAKKYKCT--SAQLALAWVLGQGDDV 202 (268)
Q Consensus 174 ~~l~~la~~~~~s--~~qlal~~~l~~~~v~ 202 (268)
+.+.+++++++++ ..|-||+++-..++|.
T Consensus 7 ~tI~e~~~~~~vs~GtiQ~Alk~Le~~gaI~ 37 (48)
T PF14502_consen 7 PTISEYSEKFGVSRGTIQNALKFLEENGAIK 37 (48)
T ss_pred CCHHHHHHHhCcchhHHHHHHHHHHHCCcEE
Confidence 4789999999887 6899999999988744
No 87
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=42.45 E-value=1e+02 Score=26.24 Aligned_cols=56 Identities=20% Similarity=0.158 Sum_probs=48.4
Q ss_pred ccCCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCC-CHHHHHHHHHHHHHcCce
Q 024433 23 VIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSV-PIEETIGEMKKLVEEGKI 78 (268)
Q Consensus 23 ~~~~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~p~~~~-~~~~~~~~l~~l~~~G~i 78 (268)
+..+++++......+-+++-++++.|-+=.+-.+.... +..+++++.|.|+++|-+
T Consensus 76 TaGc~taeEAv~tArlARE~~~t~wiKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~ 132 (262)
T COG2022 76 TAGCRTAEEAVRTARLAREALGTNWIKLEVIGDEKTLLPDPIETLKAAEQLVKEGFV 132 (262)
T ss_pred ccccCCHHHHHHHHHHHHHHccCCeEEEEEecCCcccCCChHHHHHHHHHHHhCCCE
Confidence 34678899999999999999999999999998887665 467899999999999986
No 88
>KOG1468 consensus Predicted translation initiation factor related to eIF-2B alpha/beta/delta subunits (CIG2/IDI2) [Translation, ribosomal structure and biogenesis]
Probab=42.33 E-value=1.8e+02 Score=25.54 Aligned_cols=118 Identities=14% Similarity=0.100 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHcCceeeeecCCCCHHHHHHHhCCCCeeEeccccccccc---c--hhhhHHHHHHHhCCceeec----c
Q 024433 63 EETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVHPITAVQMEWSLWTR---D--IEEEIIPLCRELGIGIVPY----S 133 (268)
Q Consensus 63 ~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~---~--~~~~~~~~~~~~gi~vi~~----~ 133 (268)
+...+..+++.++.+...--+.+.....+........--.+...+|--.- . ...+++...++.|.-=.+| .
T Consensus 118 ~~~~~~~e~ml~~dl~~N~~ig~~g~~~Llq~~~~~~kltVlThCNTGSLATagyGTALGVIRsLh~~grLehvyctETR 197 (354)
T KOG1468|consen 118 EKCISYTEDMLEKDLADNRAIGDNGAKELLQAVKDKGKLTVLTHCNTGSLATAGYGTALGVIRSLHSLGRLEHVYCTETR 197 (354)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhcCCCCceEEEEeecCCchhhcccchHHHHHHHHHhcCCcceEEecccc
Confidence 34567777777776665555555556666655554332333444443211 1 1156666666665443333 3
Q ss_pred cCCCcccCCcccccCCCCCcccccCCCCCCcchhhhHHHHHHHHHHHHhcCCC-HHHHHHHHHhcCCCCeeeecCCCChH
Q 024433 134 PLGRGFFGGKAVVESVPADSILHFFPRYKGENLDRNKNIYFRIENLAKKYKCT-SAQLALAWVLGQGDDVVPIPGTTKIK 212 (268)
Q Consensus 134 pl~~GlL~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s-~~qlal~~~l~~~~v~~vivg~~~~~ 212 (268)
|+.+|. ++-+++-+-++.--+ ..+-+.+|.+.+..|++|++|+.+..
T Consensus 198 PyNQGs--------------------------------RLTA~ELvhekiPatLItDS~vA~~m~~~~vdavvvGADrVa 245 (354)
T KOG1468|consen 198 PYNQGS--------------------------------RLTAFELVHEKIPATLITDSMVAAAMKNHQVDAVVVGADRVA 245 (354)
T ss_pred cCCccc--------------------------------chhhHHHHhccCcchhhhhHHHHHHHhcCCCCEEEEccccee
Confidence 333331 111233333332222 45668899999989999999987643
No 89
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=42.12 E-value=1.1e+02 Score=25.59 Aligned_cols=83 Identities=17% Similarity=0.223 Sum_probs=53.1
Q ss_pred HhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCc-eeeeecC-CCCHHHHHHHhCCCCeeEecccccccccchhhh
Q 024433 40 LKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGK-IKYIGLS-EASPDTIRRAHGVHPITAVQMEWSLWTRDIEEE 117 (268)
Q Consensus 40 L~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~-ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~ 117 (268)
...+|.||+=+.+.-......+. +...++.+... +..+||. |.+.+.+.++++...++.+|+.-.. ..+
T Consensus 18 a~~~gad~iG~If~~~SpR~Vs~----~~a~~i~~~v~~~~~VgVf~n~~~~~i~~i~~~~~ld~VQlHG~e-----~~~ 88 (208)
T COG0135 18 AAKAGADYIGFIFVPKSPRYVSP----EQAREIASAVPKVKVVGVFVNESIEEILEIAEELGLDAVQLHGDE-----DPE 88 (208)
T ss_pred HHHcCCCEEEEEEcCCCCCcCCH----HHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHhcCCCEEEECCCC-----CHH
Confidence 34789999877666532233333 33333343333 7899997 5588899999999999999996541 245
Q ss_pred HHHHHHHhC-Cceee
Q 024433 118 IIPLCRELG-IGIVP 131 (268)
Q Consensus 118 ~~~~~~~~g-i~vi~ 131 (268)
.++..+... +.++-
T Consensus 89 ~~~~l~~~~~~~v~k 103 (208)
T COG0135 89 YIDQLKEELGVPVIK 103 (208)
T ss_pred HHHHHHhhcCCceEE
Confidence 666666554 55444
No 90
>TIGR00035 asp_race aspartate racemase.
Probab=42.03 E-value=1.1e+02 Score=25.60 Aligned_cols=64 Identities=16% Similarity=0.129 Sum_probs=47.2
Q ss_pred CCHHHHHHHHHHHHhHcCCCcccEEEeccCCCC------------CCHHHHHHHHHHHHHcCceeeeecCCCCHHHH
Q 024433 27 GTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS------------VPIEETIGEMKKLVEEGKIKYIGLSEASPDTI 91 (268)
Q Consensus 27 ~~~~~i~~~~e~SL~~L~~d~iDl~~lH~p~~~------------~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l 91 (268)
-+.+++++-++.+-.+.+.++++.+.+++|+-. .....+.+.++.|.+.| +..+-++..+....
T Consensus 14 at~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~~~~~~~~~~~~l~~~~~~L~~~g-~d~iviaCNTah~~ 89 (229)
T TIGR00035 14 ATAELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYILGRGEDRPRPILIDIAVKLENAG-ADFIIMPCNTAHKF 89 (229)
T ss_pred HHHHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHHhcCCcchHHHHHHHHHHHHHHcC-CCEEEECCccHHHH
Confidence 357888888888888899999999999998431 12234666777776655 78888887766553
No 91
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=41.72 E-value=68 Score=22.30 Aligned_cols=28 Identities=14% Similarity=0.170 Sum_probs=24.0
Q ss_pred hhhHHHHHHHHHHHHhcCCCHHHHHHHH
Q 024433 167 DRNKNIYFRIENLAKKYKCTSAQLALAW 194 (268)
Q Consensus 167 ~~~~~~~~~l~~la~~~~~s~~qlal~~ 194 (268)
++....+.+|.++|.+.|++..++|.-.
T Consensus 48 ~~V~~sl~kL~~La~~N~v~feeLc~YA 75 (82)
T PF11020_consen 48 EKVMDSLSKLYKLAKENNVSFEELCVYA 75 (82)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 5677888999999999999999987643
No 92
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=41.60 E-value=1.3e+02 Score=25.77 Aligned_cols=73 Identities=19% Similarity=0.130 Sum_probs=50.4
Q ss_pred HHHHHHHHHHcCceeeeecCCCCHHHHHHHhCCCCeeEecccccccccc-hhhhHHHHHHHhCCceeecccCCCc
Q 024433 65 TIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVHPITAVQMEWSLWTRD-IEEEIIPLCRELGIGIVPYSPLGRG 138 (268)
Q Consensus 65 ~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~~~~~~~~~gi~vi~~~pl~~G 138 (268)
.++.+.++. .+.=-..|=|.++...+..+++...++++|+.......- ....+...|+.+|+.++..+-+..+
T Consensus 166 d~~~~~~l~-~~~PIa~dEs~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~a~~~gi~~~~~~~~es~ 239 (263)
T cd03320 166 DLAELRRLA-AGVPIALDESLRRLDDPLALAAAGALGALVLKPALLGGPRALLELAEEARARGIPAVVSSALESS 239 (263)
T ss_pred HHHHHHHhh-cCCCeeeCCccccccCHHHHHhcCCCCEEEECchhcCCHHHHHHHHHHHHHcCCCEEEEcchhhH
Confidence 355555555 333335666777778888888888889998887654322 2278899999999998876555444
No 93
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=41.23 E-value=4.8e+02 Score=27.96 Aligned_cols=105 Identities=13% Similarity=0.048 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHH-cCce--eeeecCCCCHHHHHHHhCCCCeeEecc
Q 024433 29 PDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVE-EGKI--KYIGLSEASPDTIRRAHGVHPITAVQM 105 (268)
Q Consensus 29 ~~~i~~~~e~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~-~G~i--r~iGvs~~~~~~l~~~~~~~~~~~~q~ 105 (268)
.+.+.+...+ +..-|-+.||+-.= ....+-++.+..+..+.+ .-.+ --|-|-++++..++.+++...-..+-.
T Consensus 367 ~~~a~~~A~~-qve~GA~iIDVn~~---~~~vd~~eem~rvv~~i~~~~~~~~vPlsIDS~~~~v~eaaLk~~~G~~IIN 442 (1178)
T TIGR02082 367 YDEALDIAKQ-QVENGAQILDINVD---YGMLDGVAAMKRFLNLLASEPDISTVPLMLDSSEWAVLEAGLKCIQGKCIVN 442 (1178)
T ss_pred HHHHHHHHHH-HHHCCCCEEEECCC---CCCCCHHHHHHHHHHHHHhccCCCCCeEEEeCCcHHHHHHHHHhcCCCCEEE
Confidence 3444433332 23678999999863 111233334444444443 3212 237888999999999998732222333
Q ss_pred cccccc--cchhhhHHHHHHHhCCceeecccCCCc
Q 024433 106 EWSLWT--RDIEEEIIPLCRELGIGIVPYSPLGRG 138 (268)
Q Consensus 106 ~~n~~~--~~~~~~~~~~~~~~gi~vi~~~pl~~G 138 (268)
..|... ... ..+++.+++.|..++.+.--..|
T Consensus 443 sIs~~~g~~~~-~~~~~l~~~yga~vV~m~~de~G 476 (1178)
T TIGR02082 443 SISLKDGEERF-IETAKLIKEYGAAVVVMAFDEEG 476 (1178)
T ss_pred eCCCCCCCccH-HHHHHHHHHhCCCEEEEecCCCC
Confidence 444432 222 47999999999999998754445
No 94
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=40.93 E-value=2e+02 Score=24.74 Aligned_cols=101 Identities=19% Similarity=0.200 Sum_probs=58.1
Q ss_pred cCCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCc-eeeeecCCCCHHHHHHHhCCCCeeE
Q 024433 24 IVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGK-IKYIGLSEASPDTIRRAHGVHPITA 102 (268)
Q Consensus 24 ~~~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~-ir~iGvs~~~~~~l~~~~~~~~~~~ 102 (268)
...++.+...+-+ +.|.++|++.|.+-. |... .+.++..+.+.+.++ .+.++....+...++.+.+.. ++.
T Consensus 16 ~~~~s~~~k~~i~-~~L~~~Gv~~IEvG~---P~~~---~~~~~~~~~l~~~~~~~~v~~~~r~~~~di~~a~~~g-~~~ 87 (262)
T cd07948 16 NAFFDTEDKIEIA-KALDAFGVDYIELTS---PAAS---PQSRADCEAIAKLGLKAKILTHIRCHMDDARIAVETG-VDG 87 (262)
T ss_pred CCCCCHHHHHHHH-HHHHHcCCCEEEEEC---CCCC---HHHHHHHHHHHhCCCCCcEEEEecCCHHHHHHHHHcC-cCE
Confidence 3457777666655 559999999888874 5333 334444455544343 333555566778888887752 233
Q ss_pred ecccc--cc------cccch------hhhHHHHHHHhCCceeec
Q 024433 103 VQMEW--SL------WTRDI------EEEIIPLCRELGIGIVPY 132 (268)
Q Consensus 103 ~q~~~--n~------~~~~~------~~~~~~~~~~~gi~vi~~ 132 (268)
+-+.+ |. +.... -.+.+.+++.+|+.+...
T Consensus 88 i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~ 131 (262)
T cd07948 88 VDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFS 131 (262)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 33322 11 11111 155678888888775554
No 95
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=40.62 E-value=1.8e+02 Score=24.74 Aligned_cols=89 Identities=18% Similarity=0.137 Sum_probs=51.5
Q ss_pred HHHhHcCCCcccEEEeccCCCCCCHH-HHHHHHHHHHHcCceeeeecCCC-CHHHHHHHhCCCCeeEecccccccccc-h
Q 024433 38 ASLKRLDVDYIDLYYQHRVDTSVPIE-ETIGEMKKLVEEGKIKYIGLSEA-SPDTIRRAHGVHPITAVQMEWSLWTRD-I 114 (268)
Q Consensus 38 ~SL~~L~~d~iDl~~lH~p~~~~~~~-~~~~~l~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~~~q~~~n~~~~~-~ 114 (268)
+-|+.+|+ |.+.+|..+...... --++.+.++++.-.+.-++.... +++++.+++.....+.+.+.--+.... .
T Consensus 162 ~~l~~~G~---~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~~~ 238 (254)
T TIGR00735 162 KEVEKLGA---GEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYREIT 238 (254)
T ss_pred HHHHHcCC---CEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCCCC
Confidence 34456665 556666654322111 12455566666555666665544 778888888876666665522111111 1
Q ss_pred hhhHHHHHHHhCCce
Q 024433 115 EEEIIPLCRELGIGI 129 (268)
Q Consensus 115 ~~~~~~~~~~~gi~v 129 (268)
..++.+.|+++|+.+
T Consensus 239 ~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 239 IGEVKEYLAERGIPV 253 (254)
T ss_pred HHHHHHHHHHCCCcc
Confidence 268899999998864
No 96
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=40.22 E-value=2.8e+02 Score=25.02 Aligned_cols=92 Identities=15% Similarity=0.261 Sum_probs=55.8
Q ss_pred CcccEE-EeccCCCC-----------CCHHHHHHHHHHHHH-cCc---eeee---ecCCCCHHHH---HHHhCCC-----
Q 024433 46 DYIDLY-YQHRVDTS-----------VPIEETIGEMKKLVE-EGK---IKYI---GLSEASPDTI---RRAHGVH----- 98 (268)
Q Consensus 46 d~iDl~-~lH~p~~~-----------~~~~~~~~~l~~l~~-~G~---ir~i---Gvs~~~~~~l---~~~~~~~----- 98 (268)
.++|+. .||.+++. ..++++++++.+..+ .|. |+++ ||. .+.+++ .+++...
T Consensus 203 ~~v~LalSLha~dd~~r~~l~pi~~~~~L~~ll~~~~~~l~~~~~~V~iry~LI~GvN-Ds~e~a~~L~~~lk~l~~~~~ 281 (347)
T PRK14453 203 PQVNLTFSLHSPFESQRSELMPINKRFPLNEVMKTLDEHIRHTGRKVYIAYIMLEGVN-DSKEHAEAVVGLLRNRGSWEH 281 (347)
T ss_pred cCcCEEEEecCCCHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEEEeECCCC-CCHHHHHHHHHHHhhccccCC
Confidence 356765 48887442 245667776666555 332 3443 443 444444 4444433
Q ss_pred CeeEecccccccccc------hh----hhHHHHHHHhCCceeecccCCCc
Q 024433 99 PITAVQMEWSLWTRD------IE----EEIIPLCRELGIGIVPYSPLGRG 138 (268)
Q Consensus 99 ~~~~~q~~~n~~~~~------~~----~~~~~~~~~~gi~vi~~~pl~~G 138 (268)
...++-++||.+... +. ..+.+..+++|+.+..+...+..
T Consensus 282 ~~~VnLIPyn~~~~~~~~~~~ps~e~v~~f~~~L~~~Gi~vtiR~~~G~d 331 (347)
T PRK14453 282 LYHVNLIPYNSTDKTPFKFQSSSAGQIKQFCSTLKSAGISVTVRTQFGSD 331 (347)
T ss_pred cceEEEecCCCCCCCCccCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCCc
Confidence 457888999987432 11 56677788889999988887643
No 97
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=39.63 E-value=5.1e+02 Score=27.87 Aligned_cols=92 Identities=16% Similarity=0.129 Sum_probs=56.5
Q ss_pred HcCCCcccEEEeccCCCC-CCHHHHHHHHHHHHHc----CceeeeecCCCCHHHHHHHhCCCCeeEecccccccccc-hh
Q 024433 42 RLDVDYIDLYYQHRVDTS-VPIEETIGEMKKLVEE----GKIKYIGLSEASPDTIRRAHGVHPITAVQMEWSLWTRD-IE 115 (268)
Q Consensus 42 ~L~~d~iDl~~lH~p~~~-~~~~~~~~~l~~l~~~----G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~ 115 (268)
.-|-+.||+- ++.. .+-++.+..+..+.+. -. --|-|-++++..++.+++...-..+-...|..... ..
T Consensus 395 e~GA~iIDVn----~g~~~id~~eem~rvv~~i~~~~~~~~-vPlsIDS~~~~ViEaaLk~~~G~~IINSIs~~~~~~~~ 469 (1229)
T PRK09490 395 ENGAQIIDIN----MDEGMLDSEAAMVRFLNLIASEPDIAR-VPIMIDSSKWEVIEAGLKCIQGKGIVNSISLKEGEEKF 469 (1229)
T ss_pred HCCCCEEEEC----CCCCCCCHHHHHHHHHHHHHhhhccCC-ceEEEeCCcHHHHHHHHhhcCCCCEEEeCCCCCCCccH
Confidence 6689999996 3322 2333444443333332 12 23788899999999999873222233344544321 12
Q ss_pred hhHHHHHHHhCCceeecccCCCc
Q 024433 116 EEIIPLCRELGIGIVPYSPLGRG 138 (268)
Q Consensus 116 ~~~~~~~~~~gi~vi~~~pl~~G 138 (268)
..+++.|++.|..++++.--..|
T Consensus 470 ~~~~~l~~kyga~vV~m~~de~G 492 (1229)
T PRK09490 470 IEHARLVRRYGAAVVVMAFDEQG 492 (1229)
T ss_pred HHHHHHHHHhCCCEEEEecCCCC
Confidence 47899999999999998755555
No 98
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=39.48 E-value=3.1e+02 Score=25.25 Aligned_cols=93 Identities=11% Similarity=0.096 Sum_probs=62.0
Q ss_pred cCCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCceeeeecCCCCHHHHHHHhCCCCeeEe
Q 024433 24 IVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVHPITAV 103 (268)
Q Consensus 24 ~~~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~ 103 (268)
..+++.+.+...+++-.+ +-+|.+-+|.- -..+.++.+++.|++ .|+-+-.-.-+...+-...
T Consensus 135 ~~~~t~d~~~~~v~~qa~----~GVdfmTIHaG-------V~~~~~~~~~~~~R~--~giVSRGGsi~a~Wml~~~---- 197 (432)
T COG0422 135 VEDLTEDDFFDTVEKQAE----QGVDFMTIHAG-------VLLEYVPRTKRSGRV--TGIVSRGGSIMAAWMLHNH---- 197 (432)
T ss_pred hhhCCHHHHHHHHHHHHH----hCCcEEEeehh-------hhHHHHHHHHhcCce--eeeeccchHHHHHHHHHcC----
Confidence 346777778777777664 34677888973 146778889998886 7777766666555432111
Q ss_pred cccccccccchhhhHHHHHHHhCCceeecccCC
Q 024433 104 QMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLG 136 (268)
Q Consensus 104 q~~~n~~~~~~~~~~~~~~~~~gi~vi~~~pl~ 136 (268)
.=|+|..+. .++++.|+++++.+---..+-
T Consensus 198 --~ENply~~f-d~lleI~k~yDvtlSLGDglR 227 (432)
T COG0422 198 --KENPLYEHF-DELLEIFKEYDVTLSLGDGLR 227 (432)
T ss_pred --CcCchhhhH-HHHHHHHHHhCeeeeccCCCC
Confidence 235555554 799999999999875444443
No 99
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=39.45 E-value=2.4e+02 Score=25.55 Aligned_cols=85 Identities=13% Similarity=0.221 Sum_probs=54.8
Q ss_pred EEeccCCCC-----------CCHHHHHHHHHHHHHcCceeee--------ecCCCCHHH---HHHHhCCCCeeEeccccc
Q 024433 51 YYQHRVDTS-----------VPIEETIGEMKKLVEEGKIKYI--------GLSEASPDT---IRRAHGVHPITAVQMEWS 108 (268)
Q Consensus 51 ~~lH~p~~~-----------~~~~~~~~~l~~l~~~G~ir~i--------Gvs~~~~~~---l~~~~~~~~~~~~q~~~n 108 (268)
+.||.|+.. .+.++++++.+....... +.| || |.+.++ +.+++...+..++.|+||
T Consensus 216 iSLHa~nd~lR~~L~Pink~~~~e~l~~a~r~Y~~~t~-~rVt~EY~Ll~~V-ND~~e~A~~L~~ll~~~~~~VNLIP~N 293 (349)
T COG0820 216 ISLHAPNDELRDQLMPINKKYPIEELLEAIRYYPEKSG-RRVTFEYVLLDGV-NDSLEHAKELAKLLKGIPCKVNLIPYN 293 (349)
T ss_pred EecCCCCHHHHhhhhccccCCCHHHHHHHHHhhhhccC-ceEEEEeeecccc-cCCHHHHHHHHHHhcCCCceEEEeecC
Confidence 568888543 235677888777775444 433 33 344555 445555667799999999
Q ss_pred ccccch-----h---hhHHHHHHHhCCceeecccCCC
Q 024433 109 LWTRDI-----E---EEIIPLCRELGIGIVPYSPLGR 137 (268)
Q Consensus 109 ~~~~~~-----~---~~~~~~~~~~gi~vi~~~pl~~ 137 (268)
+..... . ..+....+++||.+..+..-+.
T Consensus 294 p~~~~~y~r~~~~~i~~F~~~L~~~gv~~tvR~~~g~ 330 (349)
T COG0820 294 PVPGSDYERSSKERIRKFLKILKKAGVLVTVRKTRGD 330 (349)
T ss_pred CCCCCCccCCcHHHHHHHHHHHHhCCeeEEecccccc
Confidence 986532 1 4556666677888888777654
No 100
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=39.37 E-value=65 Score=30.28 Aligned_cols=65 Identities=17% Similarity=0.221 Sum_probs=43.5
Q ss_pred HhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCceeeeecC-CCCHHHHHHHhCCCCeeEeccccc
Q 024433 40 LKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS-EASPDTIRRAHGVHPITAVQMEWS 108 (268)
Q Consensus 40 L~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~~n 108 (268)
...+|.|++=+.+........+.+.+-+....+ . ++.+||- |-+++.+.++++...++++|+.-+
T Consensus 273 a~~~GaD~lGfIf~~~SpR~V~~~~a~~i~~~l-~---v~~VgVfv~~~~~~i~~i~~~~~lD~vQLHG~ 338 (454)
T PRK09427 273 AYDAGAVYGGLIFVEKSPRYVSLEQAQEIIAAA-P---LRYVGVFRNADIEDIVDIAKQLSLAAVQLHGD 338 (454)
T ss_pred HHhCCCCEEeeEeCCCCCCCCCHHHHHHHHHhC-C---CCEEEEEeCCCHHHHHHHHHHcCCCEEEeCCC
Confidence 346899998887544333333333332222222 2 8889997 668999999999899999999764
No 101
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=39.25 E-value=2.1e+02 Score=25.80 Aligned_cols=87 Identities=15% Similarity=0.167 Sum_probs=0.0
Q ss_pred EEeccC-----------CCCCCHHHHHHHHHHHHHcCcee----eeecCCCCH-----HHHHHHhCCCCeeEeccccccc
Q 024433 51 YYQHRV-----------DTSVPIEETIGEMKKLVEEGKIK----YIGLSEASP-----DTIRRAHGVHPITAVQMEWSLW 110 (268)
Q Consensus 51 ~~lH~p-----------~~~~~~~~~~~~l~~l~~~G~ir----~iGvs~~~~-----~~l~~~~~~~~~~~~q~~~n~~ 110 (268)
+-||.| ....+++++++++.+..++-.-+ |+=+.+.+- ..+.+++...+..++.++||.-
T Consensus 216 iSLhA~~~e~R~~l~Pi~~~~~le~ll~al~~~~~~~~r~v~ieyvLI~GvNDs~eda~~L~~ll~~l~~kVnLIPyN~~ 295 (342)
T PRK14465 216 ISLNHPDPNGRLQIMDIEEKFPLEELLQAAKDFTRELKRRITFEYVMIPGVNMGRENANKLVKIARSLDCKINVIPLNTE 295 (342)
T ss_pred EEecCCChhhcceEeeccccCCHHHHHHHHHHHHHHcCCEEEEEEEEECCccCCHHHHHHHHHHHhhCCCcEEEEccCCC
Q ss_pred ccchh-------hhHHHHHHHhCCceeecccCCC
Q 024433 111 TRDIE-------EEIIPLCRELGIGIVPYSPLGR 137 (268)
Q Consensus 111 ~~~~~-------~~~~~~~~~~gi~vi~~~pl~~ 137 (268)
..... ..+.+..+.+|+.+..+...+.
T Consensus 296 ~~~~~~ps~e~i~~F~~~L~~~Gi~v~~R~~~G~ 329 (342)
T PRK14465 296 FFGWRRPTDDEVAEFIMLLEPAGVPILNRRSPGK 329 (342)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCc
No 102
>PRK06424 transcription factor; Provisional
Probab=39.23 E-value=1.1e+02 Score=23.82 Aligned_cols=30 Identities=13% Similarity=0.068 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHhcCCC
Q 024433 171 NIYFRIENLAKKYKCTSAQLALAWVLGQGD 200 (268)
Q Consensus 171 ~~~~~l~~la~~~~~s~~qlal~~~l~~~~ 200 (268)
...+.|..+.++.|+|..++|-+--++...
T Consensus 84 ~~g~~Ir~lRe~~GLSQ~eLA~~iGvs~st 113 (144)
T PRK06424 84 DYAELVKNARERLSMSQADLAAKIFERKNV 113 (144)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHhCCCHHH
Confidence 345678888888999999988766554333
No 103
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=39.09 E-value=1.9e+02 Score=22.63 Aligned_cols=55 Identities=20% Similarity=0.280 Sum_probs=42.5
Q ss_pred eecCCCC--HHHHHHHhCCCCeeEecccccccccchhhhHHHHHHHhCCceeecccCCCcc
Q 024433 81 IGLSEAS--PDTIRRAHGVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGF 139 (268)
Q Consensus 81 iGvs~~~--~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~vi~~~pl~~Gl 139 (268)
+|...|+ ...+..++....|+++-... .+.+ .+.+..+.+.++.++..|.+.+|.
T Consensus 20 ~GlDgHd~gakvia~~l~d~GfeVi~~g~---~~tp-~e~v~aA~~~dv~vIgvSsl~g~h 76 (143)
T COG2185 20 LGLDGHDRGAKVIARALADAGFEVINLGL---FQTP-EEAVRAAVEEDVDVIGVSSLDGGH 76 (143)
T ss_pred cCccccccchHHHHHHHHhCCceEEecCC---cCCH-HHHHHHHHhcCCCEEEEEeccchH
Confidence 5777774 46678888888888775543 3443 789999999999999999999774
No 104
>PTZ00081 enolase; Provisional
Probab=38.74 E-value=3.4e+02 Score=25.47 Aligned_cols=99 Identities=14% Similarity=0.100 Sum_probs=69.5
Q ss_pred CCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcC--ceeeeecC--CCCHHHHHHHhCCCCeeE
Q 024433 27 GTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEG--KIKYIGLS--EASPDTIRRAHGVHPITA 102 (268)
Q Consensus 27 ~~~~~i~~~~e~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G--~ir~iGvs--~~~~~~l~~~~~~~~~~~ 102 (268)
.+++.+.+-..+.++.+ +++++-.|-.. +.|+.+.+|.++- .+.-+|=- ..++..+.+.++....++
T Consensus 281 ~s~~eli~~~~~~l~~y-----~I~~IEDPl~~----~D~eg~~~Lt~~lg~~i~IvgDE~~~tn~~~l~~~I~~~aad~ 351 (439)
T PTZ00081 281 LTGEELVELYLDLVKKY-----PIVSIEDPFDQ----DDWEAYAKLTAAIGQKVQIVGDDLLVTNPTRIKKAIEKKACNA 351 (439)
T ss_pred cCHHHHHHHHHHHHhcC-----CcEEEEcCCCc----ccHHHHHHHHHhhCCCceEEcCCcccCCHHHHHHHHHhCCCCE
Confidence 57777777777777665 46777777543 3466666666653 55545442 457999999999988999
Q ss_pred ecccccccccch-hhhHHHHHHHhCCceeeccc
Q 024433 103 VQMEWSLWTRDI-EEEIIPLCRELGIGIVPYSP 134 (268)
Q Consensus 103 ~q~~~n~~~~~~-~~~~~~~~~~~gi~vi~~~p 134 (268)
+|+..|-...-. ..+....|+.+|+.++....
T Consensus 352 i~iKvnqiGGITe~l~~a~lA~~~Gi~~iishr 384 (439)
T PTZ00081 352 LLLKVNQIGTVTEAIEAAKLAQKNGWGVMVSHR 384 (439)
T ss_pred EEeccccccCHHHHHHHHHHHHHcCCcEEEeCC
Confidence 999888554321 26889999999999877444
No 105
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=38.24 E-value=74 Score=31.14 Aligned_cols=75 Identities=12% Similarity=0.148 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCceeeeecC-CCCHHHHHHHhCCCCeeEecccc
Q 024433 29 PDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS-EASPDTIRRAHGVHPITAVQMEW 107 (268)
Q Consensus 29 ~~~i~~~~e~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGvs-~~~~~~l~~~~~~~~~~~~q~~~ 107 (268)
.+.++.+ ..+|.|++=+.+........+.+.+...+.+......+..+||- |.+++.+.++.+...++++|+.-
T Consensus 13 ~eda~~a-----~~~gaD~iGfIf~~~SpR~V~~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~~~~ld~vQLHG 87 (610)
T PRK13803 13 SALISKA-----VDMLPDFIGFIFYEKSPRFVGNKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSKKNGIDFVQLHG 87 (610)
T ss_pred HHHHHHH-----HHcCCCEEEEEecCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECC
Confidence 4555544 46899999998666544444455423333333333357789995 77999999999999999999965
Q ss_pred c
Q 024433 108 S 108 (268)
Q Consensus 108 n 108 (268)
+
T Consensus 88 ~ 88 (610)
T PRK13803 88 A 88 (610)
T ss_pred C
Confidence 4
No 106
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=37.37 E-value=3.1e+02 Score=24.72 Aligned_cols=136 Identities=13% Similarity=0.061 Sum_probs=80.7
Q ss_pred CCCcEEEEecccccCCC------CCCccCCCCHHHHHHHHHHHHhHcCCCcccEEEecc-CCCCCCHHHHHHHHHHHHHc
Q 024433 3 PREKVQIATKFGVVGLR------DNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHR-VDTSVPIEETIGEMKKLVEE 75 (268)
Q Consensus 3 ~R~~~~I~tK~~~~~~~------~~~~~~~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~-p~~~~~~~~~~~~l~~l~~~ 75 (268)
.|-.++|+|.+|..... ..+.....+++.|..++....+.++. .++-+.+-. =.+....+.+.++++.+.+.
T Consensus 99 ~r~t~cvSsqvGC~~~C~FC~tg~~g~~rnlt~~EIv~qv~~~~~~~~~-~~~~IvfmGmGEPlln~~~v~~~i~~l~~~ 177 (345)
T PRK14457 99 KRLTVCVSSQVGCPMACDFCATGKGGLKRSLKAHEIVDQVLTVQEDMQR-RVSHVVFMGMGEPLLNIDEVLAAIRCLNQD 177 (345)
T ss_pred CCCEEEEeCCCCCCCcCCcCCCCCCCCccccCHHHHHHHHHHHHHHhcC-CCCEEEEEecCccccCHHHHHHHHHHHhcc
Confidence 47778999888875542 11233457899999999988877653 345333333 23334467789999998875
Q ss_pred -Cc-eeeeecCCC-CHHHHHHHhCCC------CeeEecccccccccc------------hh----hhHHHHHHHhCCcee
Q 024433 76 -GK-IKYIGLSEA-SPDTIRRAHGVH------PITAVQMEWSLWTRD------------IE----EEIIPLCRELGIGIV 130 (268)
Q Consensus 76 -G~-ir~iGvs~~-~~~~l~~~~~~~------~~~~~q~~~n~~~~~------------~~----~~~~~~~~~~gi~vi 130 (268)
|. .|.+-||+. -+..+.++.+.. ....+.+.+|..+.. .- ..+..+..+.|-.+.
T Consensus 178 ~~i~~r~itvST~G~~~~i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~y~~~~gr~I~ 257 (345)
T PRK14457 178 LGIGQRRITVSTVGVPKTIPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSAKNYPIENLLEDCRHYVAITGRRVS 257 (345)
T ss_pred cCCccCceEEECCCchhhHHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHhCCEEE
Confidence 43 345666655 334455555433 122344544443321 01 234455667787787
Q ss_pred ecccCCCcc
Q 024433 131 PYSPLGRGF 139 (268)
Q Consensus 131 ~~~pl~~Gl 139 (268)
..-|+-.|+
T Consensus 258 iey~LIpGv 266 (345)
T PRK14457 258 FEYILLGGV 266 (345)
T ss_pred EEEEEECCc
Confidence 877887774
No 107
>smart00642 Aamy Alpha-amylase domain.
Probab=37.15 E-value=60 Score=25.83 Aligned_cols=21 Identities=14% Similarity=0.298 Sum_probs=18.1
Q ss_pred hhHHHHHHHhCCceeecccCC
Q 024433 116 EEIIPLCRELGIGIVPYSPLG 136 (268)
Q Consensus 116 ~~~~~~~~~~gi~vi~~~pl~ 136 (268)
..+++.|+++||.|+.=-++.
T Consensus 73 ~~lv~~~h~~Gi~vilD~V~N 93 (166)
T smart00642 73 KELVDAAHARGIKVILDVVIN 93 (166)
T ss_pred HHHHHHHHHCCCEEEEEECCC
Confidence 789999999999999866664
No 108
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=36.61 E-value=2.1e+02 Score=29.39 Aligned_cols=73 Identities=14% Similarity=0.048 Sum_probs=57.9
Q ss_pred CCCCHHHHHHHHHHHHhHcCC--------------------------CcccEEEeccCCCCCC---HHHHHHHHHHHHHc
Q 024433 25 VKGTPDYVRSCCEASLKRLDV--------------------------DYIDLYYQHRVDTSVP---IEETIGEMKKLVEE 75 (268)
Q Consensus 25 ~~~~~~~i~~~~e~SL~~L~~--------------------------d~iDl~~lH~p~~~~~---~~~~~~~l~~l~~~ 75 (268)
.+....++.+.++.+|+.++. ....+++|..|....+ ...+|+...++++.
T Consensus 668 rG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~ 747 (885)
T KOG0059|consen 668 RGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKN 747 (885)
T ss_pred cCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 345566788888888887765 4578899999876554 35799999999999
Q ss_pred CceeeeecCCCCHHHHHHHhCCCC
Q 024433 76 GKIKYIGLSEASPDTIRRAHGVHP 99 (268)
Q Consensus 76 G~ir~iGvs~~~~~~l~~~~~~~~ 99 (268)
|+ ++=+.+|+-++.+.+.....
T Consensus 748 g~--aiiLTSHsMeE~EaLCtR~a 769 (885)
T KOG0059|consen 748 GK--AIILTSHSMEEAEALCTRTA 769 (885)
T ss_pred CC--EEEEEcCCHHHHHHHhhhhh
Confidence 99 88899999999988877643
No 109
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=36.52 E-value=3.5e+02 Score=25.09 Aligned_cols=97 Identities=9% Similarity=0.050 Sum_probs=62.8
Q ss_pred CCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcC--ceeeeecCC--CCHHHHHHHhCCCCeeE
Q 024433 27 GTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEG--KIKYIGLSE--ASPDTIRRAHGVHPITA 102 (268)
Q Consensus 27 ~~~~~i~~~~e~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G--~ir~iGvs~--~~~~~l~~~~~~~~~~~ 102 (268)
++++.+.+-+++.++. .++.++-.|-+.. .++.+.++.+.- .+.-.|=-. .++..+.++++....++
T Consensus 262 ~s~~eai~~~~~lle~-----~~i~~iEdPl~~~----D~~~~~~L~~~~~~~ipI~gDE~~~t~~~~~~~~i~~~a~d~ 332 (425)
T TIGR01060 262 LTSEEMIEYYKELVEK-----YPIVSIEDGLSEE----DWEGWAELTKELGDKVQIVGDDLFVTNTEILREGIEMGVANS 332 (425)
T ss_pred cCHHHHHHHHHHHHhc-----CCcEEEEcCCCcc----cHHHHHHHHHhcCCCCeEEeCCCcccCHHHHHHHHHhCCCCE
Confidence 3444444444444433 4677888775433 366666676654 454444332 25899999999888899
Q ss_pred ecccccccccch-hhhHHHHHHHhCCceeec
Q 024433 103 VQMEWSLWTRDI-EEEIIPLCRELGIGIVPY 132 (268)
Q Consensus 103 ~q~~~n~~~~~~-~~~~~~~~~~~gi~vi~~ 132 (268)
+|+..|-...-. ..++...|+.+|+.++..
T Consensus 333 v~ik~~~iGGItea~~ia~lA~~~Gi~~vv~ 363 (425)
T TIGR01060 333 ILIKPNQIGTLTETLDAVELAKKAGYTAVIS 363 (425)
T ss_pred EEecccccCCHHHHHHHHHHHHHcCCcEEEe
Confidence 999887654322 268899999999985543
No 110
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=36.27 E-value=87 Score=25.91 Aligned_cols=90 Identities=16% Similarity=0.208 Sum_probs=56.5
Q ss_pred HhHcCCCcccEEEec-cCCCCC-----CHHHHHHHHHHHHH--cCceeeeecCCCCHHHHHHHhCCCCeeEecccccccc
Q 024433 40 LKRLDVDYIDLYYQH-RVDTSV-----PIEETIGEMKKLVE--EGKIKYIGLSEASPDTIRRAHGVHPITAVQMEWSLWT 111 (268)
Q Consensus 40 L~~L~~d~iDl~~lH-~p~~~~-----~~~~~~~~l~~l~~--~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~ 111 (268)
+..-|.++||+--=- +|.... .++.+...++.+++ .+. -+.+-++.++.++++++. ..+.+--..+. .
T Consensus 28 ~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~--plSIDT~~~~v~~~aL~~-g~~~ind~~~~-~ 103 (210)
T PF00809_consen 28 QVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDV--PLSIDTFNPEVAEAALKA-GADIINDISGF-E 103 (210)
T ss_dssp HHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTS--EEEEEESSHHHHHHHHHH-TSSEEEETTTT-S
T ss_pred HHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCe--EEEEECCCHHHHHHHHHc-CcceEEecccc-c
Confidence 346699999997543 232211 23345566666665 333 478889999999998876 33322111111 1
Q ss_pred cchhhhHHHHHHHhCCceeecccC
Q 024433 112 RDIEEEIIPLCRELGIGIVPYSPL 135 (268)
Q Consensus 112 ~~~~~~~~~~~~~~gi~vi~~~pl 135 (268)
. ..++++.++++|..++.+..-
T Consensus 104 ~--~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 104 D--DPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp S--STTHHHHHHHHTSEEEEESES
T ss_pred c--cchhhhhhhcCCCEEEEEecc
Confidence 1 479999999999999987766
No 111
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=35.82 E-value=3.6e+02 Score=24.92 Aligned_cols=97 Identities=15% Similarity=0.133 Sum_probs=64.3
Q ss_pred CCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcC--ceeeeecC--CCCHHHHHHHhCCCCeeE
Q 024433 27 GTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEG--KIKYIGLS--EASPDTIRRAHGVHPITA 102 (268)
Q Consensus 27 ~~~~~i~~~~e~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G--~ir~iGvs--~~~~~~l~~~~~~~~~~~ 102 (268)
++++.+.+-+.+.++. .++.++-.|-...+ ++.+.+|.++- .+.-.|=- .+++..+.++++....++
T Consensus 261 ~t~~eai~~~~~l~e~-----~~i~~iEdPl~~~D----~eg~~~L~~~~g~~ipi~gdE~~~~~~~~~~~~i~~~a~d~ 331 (408)
T cd03313 261 LTSEELIDYYKELVKK-----YPIVSIEDPFDEDD----WEGWAKLTAKLGDKIQIVGDDLFVTNPERLKKGIEKKAANA 331 (408)
T ss_pred cCHHHHHHHHHHHHHh-----CCcEEEEeCCCCcC----HHHHHHHHHhcCCCCeEEcCCcccCCHHHHHHHHHhCCCCE
Confidence 4555555555554443 46888888865443 55666666663 44333322 247999999999888899
Q ss_pred ecccccccccch-hhhHHHHHHHhCCceeec
Q 024433 103 VQMEWSLWTRDI-EEEIIPLCRELGIGIVPY 132 (268)
Q Consensus 103 ~q~~~n~~~~~~-~~~~~~~~~~~gi~vi~~ 132 (268)
+|+..+-.-.-. ..++...|+.+|+.++.-
T Consensus 332 v~ik~~~iGGite~~~ia~lA~~~G~~~~~s 362 (408)
T cd03313 332 LLIKVNQIGTLTETIEAIKLAKKNGYGVVVS 362 (408)
T ss_pred EEEcccccCCHHHHHHHHHHHHHcCCeEEcc
Confidence 998887654321 268889999999998653
No 112
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=35.69 E-value=3.3e+02 Score=24.52 Aligned_cols=68 Identities=10% Similarity=-0.032 Sum_probs=49.1
Q ss_pred HHHHHHHHHcCcee-eeecCCCC-HHHHHHHhCCCCeeEecccccccccc-hhhhHHHHHHHhCCceeecc
Q 024433 66 IGEMKKLVEEGKIK-YIGLSEAS-PDTIRRAHGVHPITAVQMEWSLWTRD-IEEEIIPLCRELGIGIVPYS 133 (268)
Q Consensus 66 ~~~l~~l~~~G~ir-~iGvs~~~-~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~~~~~~~~~gi~vi~~~ 133 (268)
++.+.+++++-.+- ..|=+-++ ..++.++++...++++|+..+....- ....+...|+.+|+.+...+
T Consensus 229 ~~~~~~l~~~~~ipIa~~E~~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~~~~ia~~a~~~gi~~~~h~ 299 (368)
T cd03329 229 ISSYRWLAEKLDIPILGTEHSRGALESRADWVLAGATDFLRADVNLVGGITGAMKTAHLAEAFGLDVELHG 299 (368)
T ss_pred HHHHHHHHhcCCCCEEccCcccCcHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCEEEEEC
Confidence 56677777764443 23445567 88889988888899999988765432 23688999999999986643
No 113
>PRK03892 ribonuclease P protein component 3; Provisional
Probab=35.43 E-value=2.7e+02 Score=23.34 Aligned_cols=168 Identities=13% Similarity=0.059 Sum_probs=96.8
Q ss_pred CcEEEEecccccCCCCCCccCCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCceeeeecC
Q 024433 5 EKVQIATKFGVVGLRDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS 84 (268)
Q Consensus 5 ~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGvs 84 (268)
++++.+-|+.....+ +-...++.+++..+..|.+ -+.|-..++. .+...+++=+..-++|-
T Consensus 28 ~~~~~~~~~~~~~~~--------~~~~~~~d~~~l~~~yg~~---gv~i~~~np~--------~l~~~V~k~~~~vv~V~ 88 (216)
T PRK03892 28 DEVVFTKKLVLEDSP--------DFGSLKEELKELKKEYGKV---AILLVTPKPS--------LIREVKQRFLNYLIYVQ 88 (216)
T ss_pred hheEEEEEEeccCCC--------ChhhhHHHHHHHHHhcCcc---eEEEecCCHH--------HHHHHHHhccceEEEEE
Confidence 456666666544322 2345667777777777755 5555554433 12222222234445555
Q ss_pred CCCHHHHHHHhCCCCeeEecccc-cccccchhhhHHHHHHHhCCce-eecccCCCcccCCcccccCCCCCcccccCCCCC
Q 024433 85 EASPDTIRRAHGVHPITAVQMEW-SLWTRDIEEEIIPLCRELGIGI-VPYSPLGRGFFGGKAVVESVPADSILHFFPRYK 162 (268)
Q Consensus 85 ~~~~~~l~~~~~~~~~~~~q~~~-n~~~~~~~~~~~~~~~~~gi~v-i~~~pl~~GlL~g~~~~~~~~~~~~~~~~~~~~ 162 (268)
.-+..--..+++. .+|++--++ +.-+...+.-+...+.++||++ +..+|+...-
T Consensus 89 GGd~~vNR~AvE~-~VDVL~~P~~~Rkd~g~dHVLAKlAa~n~VAIe~~L~plL~~~----------------------- 144 (216)
T PRK03892 89 GGDLRVNRYAIER-GVDAIISPWVGRKDPGIDHVLARMAAKRGVAIGFSLSPLLRAN----------------------- 144 (216)
T ss_pred CCcHHHHHHHHhc-ccceeecccccCcCCCccHHHHHHHHHcCeEEEEecHHHHhhC-----------------------
Confidence 4444444444554 566653333 2222234466778888899886 4466665210
Q ss_pred CcchhhhHHHHHHHHHHHHhcCCCHHHHHHHHHhcCCCCeeeecCCCChHHHHHHHhhcCCC
Q 024433 163 GENLDRNKNIYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLRIK 224 (268)
Q Consensus 163 ~~~~~~~~~~~~~l~~la~~~~~s~~qlal~~~l~~~~v~~vivg~~~~~~l~~nl~~~~~~ 224 (268)
+..-.+.+.....+-.++++|+.+. +++... .-+-+.+++.++......++++
T Consensus 145 G~~Rar~L~~~r~~l~L~rKYd~P~-------VISS~A--~s~~~lRsPRdl~aL~~~iGme 197 (216)
T PRK03892 145 PYERANILRFMMKAWQLVNKYKVPR-------FITSSA--ESKWEVRGPRDLMSLGINIGME 197 (216)
T ss_pred chhHHHHHHHHHHHHHHHHHcCCCE-------EEecCc--chhccCCCHHHHHHHHHHhCCC
Confidence 1112345566778888888988753 455555 6667888999999988888754
No 114
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=35.15 E-value=1.2e+02 Score=25.24 Aligned_cols=97 Identities=20% Similarity=0.212 Sum_probs=53.2
Q ss_pred CCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCceeeeecCCCCHHHHHHHhC---CCCeeEe
Q 024433 27 GTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHG---VHPITAV 103 (268)
Q Consensus 27 ~~~~~i~~~~e~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~---~~~~~~~ 103 (268)
++.+...+-+ +.|.++|+++|++- .|.......+.++.+.+.....++ .++.......+...++ ....+.+
T Consensus 11 ~~~~~k~~i~-~~L~~~Gv~~iEvg---~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~g~~~i 84 (237)
T PF00682_consen 11 FSTEEKLEIA-KALDEAGVDYIEVG---FPFASEDDFEQVRRLREALPNARL--QALCRANEEDIERAVEAAKEAGIDII 84 (237)
T ss_dssp --HHHHHHHH-HHHHHHTTSEEEEE---HCTSSHHHHHHHHHHHHHHHSSEE--EEEEESCHHHHHHHHHHHHHTTSSEE
T ss_pred cCHHHHHHHH-HHHHHhCCCEEEEc---ccccCHHHHHHhhhhhhhhccccc--ceeeeehHHHHHHHHHhhHhccCCEE
Confidence 5566555444 56999999999998 332222233455556655666444 4444455555555333 2333444
Q ss_pred cccccccc--c------------chhhhHHHHHHHhCCce
Q 024433 104 QMEWSLWT--R------------DIEEEIIPLCRELGIGI 129 (268)
Q Consensus 104 q~~~n~~~--~------------~~~~~~~~~~~~~gi~v 129 (268)
.+..+.-. . ..-...+.++++.|+.+
T Consensus 85 ~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v 124 (237)
T PF00682_consen 85 RIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV 124 (237)
T ss_dssp EEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred EecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce
Confidence 43332221 0 11167889999999988
No 115
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=35.12 E-value=2.3e+02 Score=25.57 Aligned_cols=76 Identities=11% Similarity=0.074 Sum_probs=49.9
Q ss_pred CHHHHHHHHHHHHHc-Cc---eeee---ecCCCCHHHHHHH---hCCCCeeEecccccccccc-----hh---hhHHHHH
Q 024433 61 PIEETIGEMKKLVEE-GK---IKYI---GLSEASPDTIRRA---HGVHPITAVQMEWSLWTRD-----IE---EEIIPLC 122 (268)
Q Consensus 61 ~~~~~~~~l~~l~~~-G~---ir~i---Gvs~~~~~~l~~~---~~~~~~~~~q~~~n~~~~~-----~~---~~~~~~~ 122 (268)
+++++.+++.+..+. |+ +-|+ || |.+++++.++ +...++.++.++||+.... .. ..+.+..
T Consensus 224 ~l~el~~a~~~~~~~~grri~~EyvLl~GV-NDs~e~a~~L~~~l~~~~~~vNLIPyN~v~g~~~~rp~~~~i~~f~~~L 302 (344)
T PRK14464 224 APEELVELGEAYARATGYPIQYQWTLLEGV-NDSDEEMDGIVRLLKGKYAVMNLIPYNSVDGDAYRRPSGERIVAMARYL 302 (344)
T ss_pred CHHHHHHHHHHHHHHHCCEEEEEEEEeCCC-CCCHHHHHHHHHHHhccccccceecCCccCCCCccCCCHHHHHHHHHHH
Confidence 567888888776553 42 1233 33 5566665554 4446778899999985431 11 4567777
Q ss_pred HHhCCceeecccCCC
Q 024433 123 RELGIGIVPYSPLGR 137 (268)
Q Consensus 123 ~~~gi~vi~~~pl~~ 137 (268)
+.+|+.+..+...+.
T Consensus 303 ~~~gi~~tiR~~~G~ 317 (344)
T PRK14464 303 HRRGVLTKVRNSAGQ 317 (344)
T ss_pred HHCCceEEEECCCCC
Confidence 789999999888864
No 116
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=34.99 E-value=1.2e+02 Score=21.20 Aligned_cols=67 Identities=15% Similarity=0.090 Sum_probs=39.1
Q ss_pred HhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCceeeeecCCC-CHHHHHHHhCCCCeeEeccccc
Q 024433 40 LKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEA-SPDTIRRAHGVHPITAVQMEWS 108 (268)
Q Consensus 40 L~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~~~q~~~n 108 (268)
++.++...+|++++-...+.....++++.+.... ..++-+.+++. +.....++.+.+-.+++.-+++
T Consensus 36 ~~~~~~~~~d~iiid~~~~~~~~~~~~~~i~~~~--~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kp~~ 103 (112)
T PF00072_consen 36 LELLKKHPPDLIIIDLELPDGDGLELLEQIRQIN--PSIPIIVVTDEDDSDEVQEALRAGADDYLSKPFS 103 (112)
T ss_dssp HHHHHHSTESEEEEESSSSSSBHHHHHHHHHHHT--TTSEEEEEESSTSHHHHHHHHHTTESEEEESSSS
T ss_pred HHHhcccCceEEEEEeeecccccccccccccccc--ccccEEEecCCCCHHHHHHHHHCCCCEEEECCCC
Confidence 3333445589999887655554555555554433 26666777655 5566777766555555544443
No 117
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=34.88 E-value=1.6e+02 Score=26.66 Aligned_cols=88 Identities=10% Similarity=0.092 Sum_probs=56.5
Q ss_pred EEeccCCCC-----------CCHHHHHHHHHHHHHcC----ceeeeecC--CCCHHH---HHHHhCCCCeeEeccccccc
Q 024433 51 YYQHRVDTS-----------VPIEETIGEMKKLVEEG----KIKYIGLS--EASPDT---IRRAHGVHPITAVQMEWSLW 110 (268)
Q Consensus 51 ~~lH~p~~~-----------~~~~~~~~~l~~l~~~G----~ir~iGvs--~~~~~~---l~~~~~~~~~~~~q~~~n~~ 110 (268)
+-||.+++. .+.++++++++.+.+.+ +|+++=+. |.+.++ +.+++...+..++-++||++
T Consensus 223 iSL~a~~~e~r~~l~pi~~~~~l~~Il~~l~~~~~~~~~~v~iey~lI~gvNDs~ed~~~La~ll~~l~~~VnLIPynp~ 302 (356)
T PRK14455 223 ISLHAPNNELRSSLMPINRAYPLEKLMEAIEYYIEKTNRRVTFEYILLGGVNDQVEHAEELADLLKGIKCHVNLIPVNPV 302 (356)
T ss_pred eccCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCcEEEEecCcC
Confidence 567777542 23578999999887744 23454332 344444 44555555677888899987
Q ss_pred ccc----h-h---hhHHHHHHHhCCceeecccCCCc
Q 024433 111 TRD----I-E---EEIIPLCRELGIGIVPYSPLGRG 138 (268)
Q Consensus 111 ~~~----~-~---~~~~~~~~~~gi~vi~~~pl~~G 138 (268)
... + . ..+.+.++++|+.+..+...+..
T Consensus 303 ~~~ky~~ps~e~l~~f~~~L~~~gi~v~ir~~~g~d 338 (356)
T PRK14455 303 PERDYVRTPKEDIFAFEDTLKKNGVNCTIRREHGTD 338 (356)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHCCCcEEEeCCCCcc
Confidence 531 1 1 45666688899999888777643
No 118
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=34.71 E-value=3.3e+02 Score=25.17 Aligned_cols=69 Identities=10% Similarity=0.040 Sum_probs=50.8
Q ss_pred HHHHHHHHHHcC----ceeeeecCCCCHHHHHHHhCCCCeeEecccccccccc-hhhhHHHHHHHhCCceeecc
Q 024433 65 TIGEMKKLVEEG----KIKYIGLSEASPDTIRRAHGVHPITAVQMEWSLWTRD-IEEEIIPLCRELGIGIVPYS 133 (268)
Q Consensus 65 ~~~~l~~l~~~G----~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~~~~~~~~~gi~vi~~~ 133 (268)
-++.+.++++.. .=-..|=+.++...+..+++...++++|+...-...- ....+...|+.+|+.+..+.
T Consensus 279 d~~~~~~L~~~~~~~~iPIa~gEs~~~~~~~~~ll~~~a~dil~~d~~~~GGit~~~kia~lA~a~gi~~~pH~ 352 (415)
T cd03324 279 DILGHAAIRKALAPLPIGVATGEHCQNRVVFKQLLQAGAIDVVQIDSCRLGGVNENLAVLLMAAKFGVPVCPHA 352 (415)
T ss_pred cHHHHHHHHHhcccCCCceecCCccCCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeEEEcC
Confidence 366677777764 3334566778889999999888899999987765432 22688999999999887653
No 119
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=34.55 E-value=92 Score=17.75 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhcCCCHHHHHH
Q 024433 171 NIYFRIENLAKKYKCTSAQLAL 192 (268)
Q Consensus 171 ~~~~~l~~la~~~~~s~~qlal 192 (268)
...+.+.++|++.|.|.+++.-
T Consensus 9 ~~~~~l~~~a~~~g~s~s~~ir 30 (39)
T PF01402_consen 9 ELYERLDELAKELGRSRSELIR 30 (39)
T ss_dssp HHHHHHHHHHHHHTSSHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHH
Confidence 3457899999999999887643
No 120
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=34.37 E-value=2e+02 Score=25.46 Aligned_cols=109 Identities=14% Similarity=0.092 Sum_probs=65.9
Q ss_pred CceeeeecCCCCHHHHHHHhCC---CCeeEeccccccccc---chhhhHHHHHHHhCCceeecccCCCcccCCcccccCC
Q 024433 76 GKIKYIGLSEASPDTIRRAHGV---HPITAVQMEWSLWTR---DIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESV 149 (268)
Q Consensus 76 G~ir~iGvs~~~~~~l~~~~~~---~~~~~~q~~~n~~~~---~~~~~~~~~~~~~gi~vi~~~pl~~GlL~g~~~~~~~ 149 (268)
.++-.+--++++...+.++++. ..+...-..+|-... ..+....+++++.++-++.-+.=.. .
T Consensus 156 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~v~~~nTIC~aT~~RQ~a~~~La~~vD~miVVGg~~Ss-----N------ 224 (298)
T PRK01045 156 DKLALVTQTTLSVDDTAEIIAALKERFPEIQGPPKDDICYATQNRQEAVKELAPQADLVIVVGSKNSS-----N------ 224 (298)
T ss_pred CcEEEEEcCCCcHHHHHHHHHHHHHhCcCcccCCCCCcchhhHHHHHHHHHHHhhCCEEEEECCCCCc-----c------
Confidence 5566666677777776655443 111211111222221 1236777888877766555222211 0
Q ss_pred CCCcccccCCCCCCcchhhhHHHHHHHHHHHHhcCC------CHHHHHHHHHhcCCCCeeeecCCCChHHHHHHHh
Q 024433 150 PADSILHFFPRYKGENLDRNKNIYFRIENLAKKYKC------TSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNID 219 (268)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~------s~~qlal~~~l~~~~v~~vivg~~~~~~l~~nl~ 219 (268)
. .+|.++|.++|. +..++-..|+.... ...+..|+++|+.+.+.+-
T Consensus 225 ---------T--------------~kL~~i~~~~~~~t~~Ie~~~el~~~~l~~~~-~VGitaGASTP~~li~eV~ 276 (298)
T PRK01045 225 ---------S--------------NRLREVAEEAGAPAYLIDDASEIDPEWFKGVK-TVGVTAGASAPEWLVQEVI 276 (298)
T ss_pred ---------H--------------HHHHHHHHHHCCCEEEECChHHCcHHHhcCCC-EEEEEecCCCCHHHHHHHH
Confidence 0 378999998875 67889999996554 5688899999998876654
No 121
>PRK10200 putative racemase; Provisional
Probab=33.84 E-value=2e+02 Score=24.23 Aligned_cols=64 Identities=20% Similarity=0.072 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHHHHhHcCCCcccEEEeccCCCC------------CCHHHHHHHHHHHHHcCceeeeecCCCCHHHH
Q 024433 27 GTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS------------VPIEETIGEMKKLVEEGKIKYIGLSEASPDTI 91 (268)
Q Consensus 27 ~~~~~i~~~~e~SL~~L~~d~iDl~~lH~p~~~------------~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l 91 (268)
-+.+++++-++..-.+.+.++++.+.+|+++-. .+...+.+.++.|.+.| +..+.+..-++...
T Consensus 14 aT~~~~~~i~~~t~a~~d~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~L~~~g-~~~iviaCNTah~~ 89 (230)
T PRK10200 14 STIPYYRLINEGIKQRLGGLHSAQLLLHSVDFHEIEECQRRGEWDKTGDILAEAALGLQRAG-AEGIVLCTNTMHKV 89 (230)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCeEEEeCCChHHHHHHHHCCCcchHHHHHHHHHHHHHHcC-CCEEEECCchHHHH
Confidence 357888888888888999999999999998421 23445677788888887 68888876655444
No 122
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=33.73 E-value=54 Score=29.79 Aligned_cols=122 Identities=17% Similarity=0.158 Sum_probs=58.8
Q ss_pred HHHHHHcCceeeeecCCCCHHHHHHHhCCCC-eeEecccccccccch-------hhhHHHHHHHhCCceeecccCCCccc
Q 024433 69 MKKLVEEGKIKYIGLSEASPDTIRRAHGVHP-ITAVQMEWSLWTRDI-------EEEIIPLCRELGIGIVPYSPLGRGFF 140 (268)
Q Consensus 69 l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~-~~~~q~~~n~~~~~~-------~~~~~~~~~~~gi~vi~~~pl~~GlL 140 (268)
+.+|-++|.--.+=.|+.+...+..+.+... ++-+..-+|++.+.. ..+.-.+.++.|+.+.++.|-..+ .
T Consensus 104 ia~ls~ng~~I~LNASti~~~~l~~L~~~~~~~~~i~a~HNfYPr~~TGLs~~~f~~~n~~~k~~gi~~~AFI~g~~~-~ 182 (357)
T PF05913_consen 104 IAKLSKNGIKIELNASTITEEELDELIKYGANFSNIIACHNFYPRPYTGLSEEFFIEKNQLLKEYGIKTAAFIPGDEN-K 182 (357)
T ss_dssp HHHHTTT-SEEEEETTT--CCHHHHHCCTT--GGGEEEE---B-STT-SB-HHHHHHHHHHHHHTT-EEEEEE--SSS--
T ss_pred HHHHHhCCCEEEEECCCCChHHHHHHHHhcCCHHHeEEEecccCCCCCCCCHHHHHHHHHHHHHCCCcEEEEecCCCc-c
Confidence 3344444555556666766677777766543 333333344433321 145566778899999998887632 2
Q ss_pred CCcccccCCCCCcccccCCCCCCcchhhhHHHHHHHHHHHHhcCCCHHHHHHHHHhcCCCCeeeecCCC--ChHHHHHHH
Q 024433 141 GGKAVVESVPADSILHFFPRYKGENLDRNKNIYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTT--KIKNLDDNI 218 (268)
Q Consensus 141 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~qlal~~~l~~~~v~~vivg~~--~~~~l~~nl 218 (268)
.|+ .....| ..| ++.--...+|.+..+..+.|+.|++|-. +.+.+.+-.
T Consensus 183 rGP-l~~GLP--------------TlE--------------~hR~~~p~~aa~~L~~~~~iD~V~IGD~~~s~~el~~~~ 233 (357)
T PF05913_consen 183 RGP-LYEGLP--------------TLE--------------KHRNLPPYAAALELFALGLIDDVIIGDPFASEEELKQLA 233 (357)
T ss_dssp BTT-T-S--B--------------SBG--------------GGTTS-HHHHHHHHHHTTT--EEEE-SC---HHHHHHHH
T ss_pred cCC-ccCCCC--------------ccH--------------HHcCCCHHHHHHHHHhcCCCCEEEECCCcCCHHHHHHHH
Confidence 232 000011 011 2222344578888999999999999976 555666555
Q ss_pred hh
Q 024433 219 DS 220 (268)
Q Consensus 219 ~~ 220 (268)
..
T Consensus 234 ~~ 235 (357)
T PF05913_consen 234 QY 235 (357)
T ss_dssp HC
T ss_pred HH
Confidence 54
No 123
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=33.73 E-value=2.4e+02 Score=26.06 Aligned_cols=82 Identities=9% Similarity=0.049 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHcCceeeeecCCCCHHHHHHHhC--CCCeeEecccccccccchh-hhHHHHHHHhCCceeecccCCCc
Q 024433 62 IEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHG--VHPITAVQMEWSLWTRDIE-EEIIPLCRELGIGIVPYSPLGRG 138 (268)
Q Consensus 62 ~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~--~~~~~~~q~~~n~~~~~~~-~~~~~~~~~~gi~vi~~~pl~~G 138 (268)
+..+...++.+.++.-|....+...+.....+++. .....++..+-|++..-.+ ..+.+.|+++|+-++.=.+|+.+
T Consensus 112 YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfatP 191 (396)
T COG0626 112 YGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFATP 191 (396)
T ss_pred cchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCcccc
Confidence 56788888888888888888887777766665554 5778888889999887655 78899999999999998899888
Q ss_pred ccCCc
Q 024433 139 FFGGK 143 (268)
Q Consensus 139 lL~g~ 143 (268)
++..+
T Consensus 192 ~~q~P 196 (396)
T COG0626 192 VLQRP 196 (396)
T ss_pred cccCh
Confidence 76654
No 124
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=33.40 E-value=37 Score=26.07 Aligned_cols=25 Identities=32% Similarity=0.575 Sum_probs=21.5
Q ss_pred cchhhhHHHHHHHhCCceeecccCC
Q 024433 112 RDIEEEIIPLCRELGIGIVPYSPLG 136 (268)
Q Consensus 112 ~~~~~~~~~~~~~~gi~vi~~~pl~ 136 (268)
+....++++.|+++||.|++|-.+.
T Consensus 43 ~Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 43 RDLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred cCHHHHHHHHHHHCCCEEEEEEeee
Confidence 3445899999999999999988886
No 125
>TIGR03247 glucar-dehydr glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.
Probab=33.22 E-value=3.3e+02 Score=25.50 Aligned_cols=70 Identities=10% Similarity=0.127 Sum_probs=48.0
Q ss_pred HHHHHHHHHcCcee-eeecCCCCHHHHHHHhCCCCeeEecccccccccchhhhHHHHHHHhCCceeecccC
Q 024433 66 IGEMKKLVEEGKIK-YIGLSEASPDTIRRAHGVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPL 135 (268)
Q Consensus 66 ~~~l~~l~~~G~ir-~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~vi~~~pl 135 (268)
++.+.++++...+- ..|-+.++..++..+++...+++.|.......-.....+...|+.+|+.+..++.+
T Consensus 268 ~~~la~Lr~~~~iPIa~dEs~~~~~~~~~li~~~avdi~~~d~~~gGIt~~~kIa~lA~a~Gi~v~~h~~~ 338 (441)
T TIGR03247 268 REVMAEFRRATGLPTATNMIATDWRQMGHALQLQAVDIPLADPHFWTMQGSVRVAQMCHDWGLTWGSHSNN 338 (441)
T ss_pred HHHHHHHHHhCCCCEEcCCccCCHHHHHHHHHhCCCCEEeccCCcchHHHHHHHHHHHHHcCCEEEEeCCc
Confidence 55566676654443 34667778888888888888888888764221111368899999999988776544
No 126
>PRK05414 urocanate hydratase; Provisional
Probab=33.01 E-value=1.3e+02 Score=28.76 Aligned_cols=63 Identities=19% Similarity=0.204 Sum_probs=49.1
Q ss_pred HHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCceeeeecCCCCHHHHHHHhCC---CCeeEeccc
Q 024433 37 EASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGV---HPITAVQME 106 (268)
Q Consensus 37 e~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~---~~~~~~q~~ 106 (268)
++.-+|+.+.|+|.+ ..+++++++..++.+++|+...||+-.--.+.+.++++. +.+.+-|..
T Consensus 201 ~ri~kR~~~gyld~~-------~~~Ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~~i~pDlvtDQTS 266 (556)
T PRK05414 201 SRIDKRLRTGYLDEK-------ADDLDEALALAEEAKAAGEPLSIGLLGNAADVLPELVRRGIRPDLVTDQTS 266 (556)
T ss_pred HHHHHHHhCCcceeE-------cCCHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHHHcCCCCCccCcCcc
Confidence 455678889998865 246899999999999999999999988777888888765 234444653
No 127
>PF10171 DUF2366: Uncharacterised conserved protein (DUF2366); InterPro: IPR019322 This is a set of proteins conserved from nematodes to humans. The function is not known.
Probab=32.86 E-value=99 Score=24.99 Aligned_cols=48 Identities=17% Similarity=0.313 Sum_probs=35.0
Q ss_pred HHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCceeeeecC
Q 024433 34 SCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS 84 (268)
Q Consensus 34 ~~~e~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGvs 84 (268)
.+++++|..- .-++++++..........-+..|+.+..+|++|++-+.
T Consensus 67 ~~f~~~L~e~---sn~l~lv~~~~rNp~S~~hvq~l~~l~nqg~Lr~~nLG 114 (173)
T PF10171_consen 67 QSFEDALLEA---SNDLLLVSPAIRNPTSDKHVQRLMRLRNQGRLRYLNLG 114 (173)
T ss_pred HHHHHHHHHH---hCceeccChhhcCchHHHHHHHHHHHhcCCceEEeeee
Confidence 3444444443 35788888776666677789999999999999997554
No 128
>PRK00208 thiG thiazole synthase; Reviewed
Probab=32.82 E-value=3.2e+02 Score=23.50 Aligned_cols=74 Identities=18% Similarity=0.124 Sum_probs=58.2
Q ss_pred ccCCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCC-CHHHHHHHHHHHHHcCceeeeecCCCCHHHHHHHhCC
Q 024433 23 VIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSV-PIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGV 97 (268)
Q Consensus 23 ~~~~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~p~~~~-~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~ 97 (268)
+..+++++...+-.+-..+-++++.|-|=.+..+.... +..+++++.++|+++|.+-. =+++-++....++.+.
T Consensus 69 TaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vl-pyc~~d~~~ak~l~~~ 143 (250)
T PRK00208 69 TAGCRTAEEAVRTARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVL-PYCTDDPVLAKRLEEA 143 (250)
T ss_pred CCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHHc
Confidence 45688899999999999999999999999998876654 57899999999999999733 3455566665555554
No 129
>PRK08392 hypothetical protein; Provisional
Probab=32.51 E-value=1.7e+02 Score=24.14 Aligned_cols=78 Identities=18% Similarity=0.200 Sum_probs=42.2
Q ss_pred CCcccEEEeccCCCCCCHHHHHHHHHHHHHcCceeeeecCCC-------C-HHHHHH---Hh-CC-CCeeEecccccccc
Q 024433 45 VDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEA-------S-PDTIRR---AH-GV-HPITAVQMEWSLWT 111 (268)
Q Consensus 45 ~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~-------~-~~~l~~---~~-~~-~~~~~~q~~~n~~~ 111 (268)
.||+ +.-+|........+.-.+.+.++.+.|.+.-+|=-.. . ...+.+ ++ +. ..+.+|- ..
T Consensus 86 ~D~v-I~SvH~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~g~~lEiNt-----~~ 159 (215)
T PRK08392 86 LDYV-IASVHEWFGRPEHHEYIELVKLALMDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAYGKAFEISS-----RY 159 (215)
T ss_pred CCEE-EEEeecCcCCcHHHHHHHHHHHHHhcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHhCCEEEEeC-----CC
Confidence 4666 7778854333335566778888888887666653211 1 122222 22 22 2344442 11
Q ss_pred cchhhhHHHHHHHhCCc
Q 024433 112 RDIEEEIIPLCRELGIG 128 (268)
Q Consensus 112 ~~~~~~~~~~~~~~gi~ 128 (268)
+.+...+++.|++.|+.
T Consensus 160 ~~p~~~~l~~~~~~G~~ 176 (215)
T PRK08392 160 RVPDLEFIRECIKRGIK 176 (215)
T ss_pred CCCCHHHHHHHHHcCCE
Confidence 22346788888888864
No 130
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=32.47 E-value=3.1e+02 Score=23.24 Aligned_cols=51 Identities=16% Similarity=0.053 Sum_probs=31.8
Q ss_pred hhHHHHHHHhCCceeecccCCCcccCCcccccCCCCCcccccCCCCCCcchhhhHHHHHHHHHHHHhcCC
Q 024433 116 EEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVPADSILHFFPRYKGENLDRNKNIYFRIENLAKKYKC 185 (268)
Q Consensus 116 ~~~~~~~~~~gi~vi~~~pl~~GlL~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~ 185 (268)
...++.|+..|+.++...+.... .. + .....++.....+..+.++|+++|+
T Consensus 97 ~~~i~~a~~lG~~~v~~~~~~~~-----~~-------------~-~~~~~~~~~~~~l~~l~~~a~~~gv 147 (284)
T PRK13210 97 KKAIRLAQDLGIRTIQLAGYDVY-----YE-------------E-KSEETRQRFIEGLAWAVEQAAAAQV 147 (284)
T ss_pred HHHHHHHHHhCCCEEEECCcccc-----cc-------------c-ccHHHHHHHHHHHHHHHHHHHHhCC
Confidence 68899999999998875321100 00 0 0122345556677778888888887
No 131
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=32.42 E-value=1e+02 Score=20.20 Aligned_cols=17 Identities=12% Similarity=0.440 Sum_probs=15.3
Q ss_pred HHHHHHHhcCCCHHHHH
Q 024433 175 RIENLAKKYKCTSAQLA 191 (268)
Q Consensus 175 ~l~~la~~~~~s~~qla 191 (268)
.+.+||+++|++..+|-
T Consensus 24 ~lkdIA~~Lgvs~~tIr 40 (60)
T PF10668_consen 24 KLKDIAEKLGVSESTIR 40 (60)
T ss_pred cHHHHHHHHCCCHHHHH
Confidence 68999999999998875
No 132
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=32.01 E-value=1.3e+02 Score=28.54 Aligned_cols=63 Identities=21% Similarity=0.249 Sum_probs=49.2
Q ss_pred HHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCceeeeecCCCCHHHHHHHhCC---CCeeEeccc
Q 024433 37 EASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGV---HPITAVQME 106 (268)
Q Consensus 37 e~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~---~~~~~~q~~ 106 (268)
++.-+|+.+.|+|.+ ..+++++++..++.+++|+...||+-.--.+.+.++++. +.+.+-|..
T Consensus 192 ~ri~kR~~~gyld~~-------~~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~r~i~pDlvtDQTS 257 (545)
T TIGR01228 192 SRIDKRLETKYCDEQ-------TDSLDEALARAEEAKAEGKPISIGLLGNAAEVLPELLKRGVVPDVVTDQTS 257 (545)
T ss_pred HHHHHHHhcCcceeE-------cCCHHHHHHHHHHHHHcCCceEEEeeccHHHHHHHHHHcCCCCCCcCCCCc
Confidence 355678889998865 246899999999999999999999988878888888775 334444654
No 133
>COG2949 SanA Uncharacterized membrane protein [Function unknown]
Probab=31.58 E-value=3.1e+02 Score=23.00 Aligned_cols=100 Identities=17% Similarity=0.303 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCc------eeeeecCCC-CHHHHHHHhCCCCeeE
Q 024433 30 DYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGK------IKYIGLSEA-SPDTIRRAHGVHPITA 102 (268)
Q Consensus 30 ~~i~~~~e~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~------ir~iGvs~~-~~~~l~~~~~~~~~~~ 102 (268)
.+....++..-+--...+++-++|...+......|.+.-.++|.+.|- ..|-|+++. +.-+..+......|.+
T Consensus 76 ~yy~~Ri~aA~~ly~~gKV~~LLlSGDN~~~sYnEp~tM~kdL~~~GVp~~~i~lDyAGFrTLDSvvRA~kVF~~~~ftI 155 (235)
T COG2949 76 RYYTYRIDAAIALYKAGKVNYLLLSGDNATVSYNEPRTMRKDLIAAGVPAKNIFLDYAGFRTLDSVVRARKVFGTNDFTI 155 (235)
T ss_pred HhHHHHHHHHHHHHhcCCeeEEEEecCCCcccccchHHHHHHHHHcCCCHHHeeecccCccHHHHHHHHHHHcCcCcEEE
Confidence 345555666666666678999999988877788888888999999885 345577776 5566677777777777
Q ss_pred ecccccccccchhhhHHHHHHHhCCceeecccC
Q 024433 103 VQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPL 135 (268)
Q Consensus 103 ~q~~~n~~~~~~~~~~~~~~~~~gi~vi~~~pl 135 (268)
+--.||- +..+=.|+.+||.-+++..-
T Consensus 156 ItQ~FHc------eRAlfiA~~~gIdAic~~ap 182 (235)
T COG2949 156 ITQRFHC------ERALFIARQMGIDAICFAAP 182 (235)
T ss_pred Eeccccc------HHHHHHHHHhCCceEEecCC
Confidence 6556652 45566899999998876543
No 134
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=31.17 E-value=3.4e+02 Score=23.34 Aligned_cols=103 Identities=16% Similarity=0.210 Sum_probs=57.1
Q ss_pred CCCHHHHHHHHHHHHhHcCCCcccEEEecc-CCC------CCCHHHHHHHHHHHHHc-CceeeeecCCCCH---------
Q 024433 26 KGTPDYVRSCCEASLKRLDVDYIDLYYQHR-VDT------SVPIEETIGEMKKLVEE-GKIKYIGLSEASP--------- 88 (268)
Q Consensus 26 ~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~-p~~------~~~~~~~~~~l~~l~~~-G~ir~iGvs~~~~--------- 88 (268)
+.++..+...+... ..+|++ +++.|-- |.. ...+....+-++.+++. |. -.||++.+..
T Consensus 69 ~~n~~~l~~~L~~~-~~~Gi~--nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~-f~ig~a~~Peghp~~~~~~ 144 (272)
T TIGR00676 69 GATREEIREILREY-RELGIR--HILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGD-FDIGVAAYPEKHPEAPNLE 144 (272)
T ss_pred CCCHHHHHHHHHHH-HHCCCC--EEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCC-eeEEEEeCCCCCCCCCCHH
Confidence 45677777777644 788865 4554443 221 11233344444445543 43 4788776421
Q ss_pred HHHHHHh---CC-CCeeEecccccccccchhhhHHHHHHHhCCceeecccCCCcc
Q 024433 89 DTIRRAH---GV-HPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRGF 139 (268)
Q Consensus 89 ~~l~~~~---~~-~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~vi~~~pl~~Gl 139 (268)
.++..+. +. ..+-+-|.-|+. ..-..+++.|++.|+.+ |+--|+
T Consensus 145 ~~~~~L~~K~~aGA~f~iTQ~~fd~---~~~~~~~~~~~~~gi~~----PIi~Gi 192 (272)
T TIGR00676 145 EDIENLKRKVDAGADYAITQLFFDN---DDYYRFVDRCRAAGIDV----PIIPGI 192 (272)
T ss_pred HHHHHHHHHHHcCCCeEeeccccCH---HHHHHHHHHHHHcCCCC----CEeccc
Confidence 2233332 22 346777777764 32368888999998875 444453
No 135
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=31.04 E-value=3.2e+02 Score=24.55 Aligned_cols=36 Identities=22% Similarity=0.213 Sum_probs=15.2
Q ss_pred HHHHHcCceeeeecCCC-CHHHHHHHhCCCCeeEecc
Q 024433 70 KKLVEEGKIKYIGLSEA-SPDTIRRAHGVHPITAVQM 105 (268)
Q Consensus 70 ~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~~~q~ 105 (268)
+++++.=.+--+++... +++.++++++....|.+++
T Consensus 269 ~~ik~~v~iPVi~~G~i~~~~~a~~~i~~g~~D~V~~ 305 (353)
T cd02930 269 AKLKRAVDIPVIASNRINTPEVAERLLADGDADMVSM 305 (353)
T ss_pred HHHHHhCCCCEEEcCCCCCHHHHHHHHHCCCCChhHh
Confidence 33333333333333332 4444555554444444444
No 136
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=30.99 E-value=3e+02 Score=24.08 Aligned_cols=107 Identities=12% Similarity=0.087 Sum_probs=65.4
Q ss_pred CceeeeecCCCCHHHHHHHhCC---CCeeEeccccccccc---chhhhHHHHHHHhCCceeecccCCCcccCCcccccCC
Q 024433 76 GKIKYIGLSEASPDTIRRAHGV---HPITAVQMEWSLWTR---DIEEEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESV 149 (268)
Q Consensus 76 G~ir~iGvs~~~~~~l~~~~~~---~~~~~~q~~~n~~~~---~~~~~~~~~~~~~gi~vi~~~pl~~GlL~g~~~~~~~ 149 (268)
.++-.+--++.+.+.+.++++. ..+.+ .+ +|-... ..+....+++++-++-++.-+.=.. .
T Consensus 157 ~kv~~vsQTT~~~~~~~~iv~~l~~~~~~~-~v-~~TIC~aT~~RQ~a~~~La~~vD~miVVGg~~Ss-----N------ 223 (281)
T PRK12360 157 DKACVVAQTTIIPELWEDILNVIKLKSKEL-VF-FNTICSATKKRQESAKELSKEVDVMIVIGGKHSS-----N------ 223 (281)
T ss_pred cCEEEEECCCCcHHHHHHHHHHHHHhCccc-cc-CCCcchhhhhHHHHHHHHHHhCCEEEEecCCCCc-----c------
Confidence 5555566667777776655442 11111 11 222221 1236677788777766655222211 0
Q ss_pred CCCcccccCCCCCCcchhhhHHHHHHHHHHHHhcCC------CHHHHHHHHHhcCCCCeeeecCCCChHHHHHHHh
Q 024433 150 PADSILHFFPRYKGENLDRNKNIYFRIENLAKKYKC------TSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNID 219 (268)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~------s~~qlal~~~l~~~~v~~vivg~~~~~~l~~nl~ 219 (268)
. ..|.++|.+.|. ++.++--.|+.... ...+..|+|+|+.+.+.+-
T Consensus 224 ---------T--------------~rL~eia~~~~~~t~~Ie~~~el~~~~~~~~~-~VGitaGASTP~~li~eV~ 275 (281)
T PRK12360 224 ---------T--------------QKLVKICEKNCPNTFHIETADELDLEMLKDYK-IIGITAGASTPDWIIEEVI 275 (281)
T ss_pred ---------H--------------HHHHHHHHHHCCCEEEECChHHCCHHHhCCCC-EEEEEccCCCCHHHHHHHH
Confidence 0 378999998875 67888889998754 5688899999998877653
No 137
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=30.96 E-value=4.7e+02 Score=24.79 Aligned_cols=47 Identities=6% Similarity=0.074 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcC
Q 024433 27 GTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEG 76 (268)
Q Consensus 27 ~~~~~i~~~~e~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G 76 (268)
.+++.+.+.++...++.|+.++ .+...+.......+.+.++++++.|
T Consensus 222 rs~e~Vv~Ei~~l~~~~gv~~~---~~~Dd~f~~~~~~~~~l~~~l~~~~ 268 (497)
T TIGR02026 222 RDPKKFVDEIEWLVRTHGVGFF---ILADEEPTINRKKFQEFCEEIIARN 268 (497)
T ss_pred CCHHHHHHHHHHHHHHcCCCEE---EEEecccccCHHHHHHHHHHHHhcC
Confidence 4677888888887777776543 3333233334456667777777776
No 138
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=30.54 E-value=3.6e+02 Score=23.44 Aligned_cols=20 Identities=15% Similarity=0.247 Sum_probs=13.3
Q ss_pred hhHHHHHHHhCCceeecccC
Q 024433 116 EEIIPLCRELGIGIVPYSPL 135 (268)
Q Consensus 116 ~~~~~~~~~~gi~vi~~~pl 135 (268)
.++.+.|+++||..|-..+-
T Consensus 137 ~~~~~~~~~~gi~~I~lvaP 156 (265)
T COG0159 137 DELLKAAEKHGIDPIFLVAP 156 (265)
T ss_pred HHHHHHHHHcCCcEEEEeCC
Confidence 46777777777776654443
No 139
>PF02426 MIase: Muconolactone delta-isomerase; InterPro: IPR003464 This small enzyme forms a homodecameric complex, that catalyses the third step in the catabolism of catechol to succinate- and acetyl-coa in the beta-ketoadipate pathway (5.3.3.4 from EC). The protein has a ferredoxin-like fold according to SCOP.; GO: 0006725 cellular aromatic compound metabolic process
Probab=30.29 E-value=84 Score=22.51 Aligned_cols=50 Identities=16% Similarity=0.189 Sum_probs=31.4
Q ss_pred HHHHHHHHHHcCceeeee--------cCCC---CHHHHHHHhCCCC-eeEecccccccccch
Q 024433 65 TIGEMKKLVEEGKIKYIG--------LSEA---SPDTIRRAHGVHP-ITAVQMEWSLWTRDI 114 (268)
Q Consensus 65 ~~~~l~~l~~~G~ir~iG--------vs~~---~~~~l~~~~~~~~-~~~~q~~~n~~~~~~ 114 (268)
-.+...+|+++|+++++. +|-| +.+.+.+++..-| +.+..+...++.+++
T Consensus 27 E~~~a~eLq~~G~~~~lWr~~G~~~n~~Ifdv~d~~eLh~lL~sLPL~p~m~i~VtpL~~Hp 88 (91)
T PF02426_consen 27 EKARAQELQRQGKWRHLWRVVGRYANVSIFDVEDNDELHELLSSLPLFPYMDIEVTPLARHP 88 (91)
T ss_pred HHHHHHHHHHCCeeeEEEEecCCcceEEEEECCCHHHHHHHHHhCCCccceeeeEEecccCC
Confidence 355678899999999962 2222 4466666665533 556666666666554
No 140
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=30.21 E-value=3.7e+02 Score=25.55 Aligned_cols=102 Identities=25% Similarity=0.288 Sum_probs=61.5
Q ss_pred HHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHH-----cCceeee--ecCCCC--------HHHHHHHhCC
Q 024433 33 RSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVE-----EGKIKYI--GLSEAS--------PDTIRRAHGV 97 (268)
Q Consensus 33 ~~~~e~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~-----~G~ir~i--Gvs~~~--------~~~l~~~~~~ 97 (268)
.+..++..++++ +.-=++.+.+.|....+..-+++++.+.+ .|++..+ |+.+.+ ..++.+++..
T Consensus 272 ~~~~~~lr~~~~-~~kiIl~VDRLDy~KGI~~kl~Afe~~L~~~Pe~~gkv~Lvqi~~psr~~v~~y~~l~~~v~~~v~~ 350 (487)
T TIGR02398 272 REMMERIRSELA-GVKLILSAERVDYTKGILEKLNAYERLLERRPELLGKVTLVTACVPAASGMTIYDELQGQIEQAVGR 350 (487)
T ss_pred HHHHHHHHHHcC-CceEEEEecccccccCHHHHHHHHHHHHHhCccccCceEEEEEeCCCcccchHHHHHHHHHHHHHHH
Confidence 344556667777 66677888888888889999999999865 3677775 554422 1223333222
Q ss_pred -----CCeeEecccccccccc-hhhhHHHHHHHhCCceeecccCCCcc
Q 024433 98 -----HPITAVQMEWSLWTRD-IEEEIIPLCRELGIGIVPYSPLGRGF 139 (268)
Q Consensus 98 -----~~~~~~q~~~n~~~~~-~~~~~~~~~~~~gi~vi~~~pl~~Gl 139 (268)
..+++. +..++.+. ...++..+.+..+|.++. |+-.|+
T Consensus 351 IN~~fg~~~~~--pv~~~~~~v~~~el~alYr~ADV~lvT--~lrDGm 394 (487)
T TIGR02398 351 INGRFARIGWT--PLQFFTRSLPYEEVSAWFAMADVMWIT--PLRDGL 394 (487)
T ss_pred HhhccCCCCCc--cEEEEcCCCCHHHHHHHHHhCCEEEEC--cccccc
Confidence 111111 11222222 237888888888888776 665553
No 141
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=30.11 E-value=1.7e+02 Score=25.06 Aligned_cols=55 Identities=18% Similarity=0.121 Sum_probs=40.6
Q ss_pred cCCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCC-CHHHHHHHHHHHHHcCce
Q 024433 24 IVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSV-PIEETIGEMKKLVEEGKI 78 (268)
Q Consensus 24 ~~~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~p~~~~-~~~~~~~~l~~l~~~G~i 78 (268)
..+++++...+.-+-+.+-++++.|-|=.+..+.... +..+++++-+.|+++|-+
T Consensus 70 aGc~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~ 125 (247)
T PF05690_consen 70 AGCRTAEEAVRTARLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFV 125 (247)
T ss_dssp TT-SSHHHHHHHHHHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-E
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCE
Confidence 4578899999999999999999999988888876654 467999999999999976
No 142
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=29.99 E-value=3.9e+02 Score=24.20 Aligned_cols=108 Identities=12% Similarity=0.122 Sum_probs=68.3
Q ss_pred CCCcEEEEecccccCCC------CCCccCCCCHHHHHHHHHHHHhHcCCC----cccEEEeccCCCCCCHHHHHHHHHHH
Q 024433 3 PREKVQIATKFGVVGLR------DNGVIVKGTPDYVRSCCEASLKRLDVD----YIDLYYQHRVDTSVPIEETIGEMKKL 72 (268)
Q Consensus 3 ~R~~~~I~tK~~~~~~~------~~~~~~~~~~~~i~~~~e~SL~~L~~d----~iDl~~lH~p~~~~~~~~~~~~l~~l 72 (268)
.|.-++|+|-+|..-.. ..+.....++..|..|+....++++.. --.+.++---.+..-++.+..+++-+
T Consensus 99 ~r~tlCVSsQvGC~~~C~FCaTg~~G~~RNLs~~EIv~Qv~~~~~~~~~~~~~~i~NVV~MGMGEPl~N~dnV~~a~~i~ 178 (349)
T COG0820 99 DRNTLCVSSQVGCPVGCTFCATGQGGLNRNLSAGEIVEQVLLAAKALGEDFGRRISNVVFMGMGEPLLNLDNVVKALEII 178 (349)
T ss_pred CCceEEEecCCCcCCCCCeeccccccceeccCHHHHHHHHHHHHHhcCccccceeeeEEEecCCchhhhHHHHHHHHHhh
Confidence 46678999998876543 125567899999999999999999874 22333333323333467788888887
Q ss_pred HH-cCc---eeeeecCCCC-HHHHHHHhCCCCeeEeccccccc
Q 024433 73 VE-EGK---IKYIGLSEAS-PDTIRRAHGVHPITAVQMEWSLW 110 (268)
Q Consensus 73 ~~-~G~---ir~iGvs~~~-~~~l~~~~~~~~~~~~q~~~n~~ 110 (268)
.+ .|. .|.+-||+-. ..++.++.+...-...++..|.-
T Consensus 179 ~~~~G~~ls~R~iTvSTsGi~~~I~~l~~~~~~v~LAiSLHa~ 221 (349)
T COG0820 179 NDDEGLGLSKRRITVSTSGIVPRIRKLADEQLGVALAISLHAP 221 (349)
T ss_pred cCcccccccceEEEEecCCCchhHHHHHhhcCCeEEEEecCCC
Confidence 74 332 1667777765 45566666432223344555543
No 143
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=29.97 E-value=4.1e+02 Score=24.04 Aligned_cols=99 Identities=17% Similarity=0.190 Sum_probs=60.4
Q ss_pred cCCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCc-eeeeecCCCCHHHHHHHhCCCCeeE
Q 024433 24 IVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGK-IKYIGLSEASPDTIRRAHGVHPITA 102 (268)
Q Consensus 24 ~~~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~-ir~iGvs~~~~~~l~~~~~~~~~~~ 102 (268)
...++.+...+-+ +.|.++|+++|++- .|.. -+.-++.++.+.+.+. .+..+.+......++.+.+.. .+.
T Consensus 17 ~~~~s~~~k~~ia-~~L~~~Gv~~IEvG---~p~~---~~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g-~~~ 88 (365)
T TIGR02660 17 GVAFTAAEKLAIA-RALDEAGVDELEVG---IPAM---GEEERAVIRAIVALGLPARLMAWCRARDADIEAAARCG-VDA 88 (365)
T ss_pred CCCCCHHHHHHHH-HHHHHcCCCEEEEe---CCCC---CHHHHHHHHHHHHcCCCcEEEEEcCCCHHHHHHHHcCC-cCE
Confidence 3457777655555 66999999999885 3322 2334666667766543 666777767788888877753 233
Q ss_pred ecccccc--c------ccchh------hhHHHHHHHhCCcee
Q 024433 103 VQMEWSL--W------TRDIE------EEIIPLCRELGIGIV 130 (268)
Q Consensus 103 ~q~~~n~--~------~~~~~------~~~~~~~~~~gi~vi 130 (268)
+.+.... . ....+ .+.+++++++|+.+.
T Consensus 89 i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~ 130 (365)
T TIGR02660 89 VHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVS 130 (365)
T ss_pred EEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 3332221 1 11111 468889999998754
No 144
>COG1151 6Fe-6S prismane cluster-containing protein [Energy production and conversion]
Probab=29.78 E-value=2.8e+02 Score=26.82 Aligned_cols=50 Identities=16% Similarity=0.268 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhHcCCCcccEEEeccCCCCC---CHHHHHHHHHHHHHcCceeeee
Q 024433 30 DYVRSCCEASLKRLDVDYIDLYYQHRVDTSV---PIEETIGEMKKLVEEGKIKYIG 82 (268)
Q Consensus 30 ~~i~~~~e~SL~~L~~d~iDl~~lH~p~~~~---~~~~~~~~l~~l~~~G~ir~iG 82 (268)
+...+-|+..++..+-.+.+ -|...... .+...+..+-+++++|+||.+.
T Consensus 360 ~~~~~vIe~A~e~~~~r~~~---~~~ivvGFs~~~il~a~d~lielI~sGkIKgv~ 412 (576)
T COG1151 360 EDFSEVIEMAIENFKNRKSE---KHKIVVGFSHESILAAADPLIELIASGKIKGVV 412 (576)
T ss_pred hhHHHHHHHHHhccCCcccc---cceeEEeecHHHHHHHHHHHHHHHhcCCcceEE
Confidence 67788899999999888877 23222122 2345667788899999999973
No 145
>PRK02399 hypothetical protein; Provisional
Probab=29.61 E-value=1.6e+02 Score=27.29 Aligned_cols=48 Identities=23% Similarity=0.402 Sum_probs=30.8
Q ss_pred HHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCceeeeecCCCCHHH
Q 024433 35 CCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDT 90 (268)
Q Consensus 35 ~~e~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~ 90 (268)
++++..++|.-...|++.+|.-... =++||+|.++|.+. ||-..+..+
T Consensus 200 ~v~~~~~~Le~~GyEvlVFHATG~G------GraME~Li~~G~~~--gVlDlTttE 247 (406)
T PRK02399 200 CVQAAREELEARGYEVLVFHATGTG------GRAMEKLIDSGLIA--GVLDLTTTE 247 (406)
T ss_pred HHHHHHHHHHhCCCeEEEEcCCCCc------hHHHHHHHHcCCce--EEEEcchHH
Confidence 3344444444344699999996554 36899999999985 444444433
No 146
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=29.50 E-value=3.1e+02 Score=22.46 Aligned_cols=85 Identities=12% Similarity=0.021 Sum_probs=55.6
Q ss_pred CcccEEEeccCCCCCCHHHHHHHHHHHHHcCceeeeecCCCCHHHHHHHhCCCCeeEeccccc-ccccchhhhHHHHHHH
Q 024433 46 DYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVHPITAVQMEWS-LWTRDIEEEIIPLCRE 124 (268)
Q Consensus 46 d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q~~~n-~~~~~~~~~~~~~~~~ 124 (268)
.-..+..+.++. . -+....+.+.|-. .+-+.-.+.+.+.++++.....++.+..+ .-.......+++.|++
T Consensus 21 ~~~~V~~l~R~~----~---~~~~~~l~~~g~~-vv~~d~~~~~~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~ 92 (233)
T PF05368_consen 21 AGFSVRALVRDP----S---SDRAQQLQALGAE-VVEADYDDPESLVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKA 92 (233)
T ss_dssp TTGCEEEEESSS----H---HHHHHHHHHTTTE-EEES-TT-HHHHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEecc----c---hhhhhhhhcccce-EeecccCCHHHHHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhc
Confidence 346788887754 1 2234456667764 56666668889999988766655555543 2222234789999999
Q ss_pred hCCceeecccCCCc
Q 024433 125 LGIGIVPYSPLGRG 138 (268)
Q Consensus 125 ~gi~vi~~~pl~~G 138 (268)
.||..+.++.++..
T Consensus 93 agVk~~v~ss~~~~ 106 (233)
T PF05368_consen 93 AGVKHFVPSSFGAD 106 (233)
T ss_dssp HT-SEEEESEESSG
T ss_pred cccceEEEEEeccc
Confidence 99999999998765
No 147
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=29.31 E-value=70 Score=19.62 Aligned_cols=42 Identities=12% Similarity=0.181 Sum_probs=27.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHhcCCCCeeeecCCCChHHHHHHHhhcCC
Q 024433 176 IENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTKIKNLDDNIDSLRI 223 (268)
Q Consensus 176 l~~la~~~~~s~~qlal~~~l~~~~v~~vivg~~~~~~l~~nl~~~~~ 223 (268)
|.+||+..|+|.+.+ ..+|..+. -+...+.+++.+-++.+++
T Consensus 2 i~dIA~~agvS~~TV--Sr~ln~~~----~vs~~tr~rI~~~a~~lgY 43 (46)
T PF00356_consen 2 IKDIAREAGVSKSTV--SRVLNGPP----RVSEETRERILEAAEELGY 43 (46)
T ss_dssp HHHHHHHHTSSHHHH--HHHHTTCS----SSTHHHHHHHHHHHHHHTB
T ss_pred HHHHHHHHCcCHHHH--HHHHhCCC----CCCHHHHHHHHHHHHHHCC
Confidence 688999999999864 44555442 3445566666666666554
No 148
>COG0282 ackA Acetate kinase [Energy production and conversion]
Probab=29.09 E-value=4e+02 Score=24.55 Aligned_cols=124 Identities=15% Similarity=0.146 Sum_probs=74.5
Q ss_pred HHHHHHHHHcCceeeeecCCCCH----HHHHHHhCCCCeeEecccccccccchhhhHHHHHHHhCCc---eeecccCCCc
Q 024433 66 IGEMKKLVEEGKIKYIGLSEASP----DTIRRAHGVHPITAVQMEWSLWTRDIEEEIIPLCRELGIG---IVPYSPLGRG 138 (268)
Q Consensus 66 ~~~l~~l~~~G~ir~iGvs~~~~----~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~---vi~~~pl~~G 138 (268)
+..-.++.++-.||.+|+=.-+- .++.+.+...--+.+.+-.|+-+.. .+ .|-++|.. -+++.||. |
T Consensus 160 YalP~~~y~~~gIRrYGFHGtSh~YVs~~aa~~L~k~~~~l~~I~~HLGNGA---Si--cAiknGkSvDTSMGfTPLe-G 233 (396)
T COG0282 160 YALPYELYEKYGIRRYGFHGTSHKYVSQRAAEILGKPLEDLNLITCHLGNGA---SI--CAIKNGKSVDTSMGFTPLE-G 233 (396)
T ss_pred ecCCHHHHHhcCceecccCccchHHHHHHHHHHhCCCccccCEEEEEecCch---hh--hhhhCCeeeccCCCCCccc-c
Confidence 33445688888899998865543 3455555544447777777776542 11 22245543 35678887 6
Q ss_pred ccCCcccccCCCCCcccccCCCCCCcchhhhHHHHHHHHHHHHhcCCCHHHHHHHHHhcCCCCeeeecCCCC-hHHHHHH
Q 024433 139 FFGGKAVVESVPADSILHFFPRYKGENLDRNKNIYFRIENLAKKYKCTSAQLALAWVLGQGDDVVPIPGTTK-IKNLDDN 217 (268)
Q Consensus 139 lL~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~qlal~~~l~~~~v~~vivg~~~-~~~l~~n 217 (268)
+.-|.....- +| ..+.-+++..|+|+.|+.-----..+- -=+.|.++ ...++++
T Consensus 234 l~MGTRsGdi---------DP--------------~ii~~l~~~~~~s~~~i~~~LNkkSGl--lGlSg~ssD~R~l~~~ 288 (396)
T COG0282 234 LMMGTRSGDI---------DP--------------GIILYLMEQEGMSAEEIDTLLNKKSGL--LGLSGLSSDMRDLEEA 288 (396)
T ss_pred eeccCCCCCC---------Ch--------------HHHHHHHHhcCCCHHHHHHHHhhhccc--cccccccchHHHHHHH
Confidence 6555421111 11 267788889999999876655555554 45556454 6666666
Q ss_pred Hhh
Q 024433 218 IDS 220 (268)
Q Consensus 218 l~~ 220 (268)
..-
T Consensus 289 ~~~ 291 (396)
T COG0282 289 AAE 291 (396)
T ss_pred hcc
Confidence 543
No 149
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=28.50 E-value=1.5e+02 Score=25.32 Aligned_cols=87 Identities=18% Similarity=0.064 Sum_probs=53.5
Q ss_pred CcccEEEeccCCCCCCHHHHHHHHHHHHHcCceeee--ecCCCCHHHHHHHhCCCCeeEec----ccccccccchhhhHH
Q 024433 46 DYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYI--GLSEASPDTIRRAHGVHPITAVQ----MEWSLWTRDIEEEII 119 (268)
Q Consensus 46 d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~i--Gvs~~~~~~l~~~~~~~~~~~~q----~~~n~~~~~~~~~~~ 119 (268)
+--|+.-||.-|+. -+..+++.|++|.+.|.==.+ |||+|......-=.+..-+.+.| ...+--.+.++.+.+
T Consensus 74 ~Gk~VvRLhSGDps-iYgA~~EQm~~L~~~gI~yevvPGVss~~AAAA~L~~ELT~P~vsQtvilTR~sgrt~vpe~e~l 152 (254)
T COG2875 74 EGKDVVRLHSGDPS-IYGALAEQMRELEALGIPYEVVPGVSSFAAAAAALGIELTVPGVSQTVILTRPSGRTPVPEKESL 152 (254)
T ss_pred cCCeEEEeecCChh-HHHHHHHHHHHHHHcCCCeEEeCCchHHHHHHHHhCceeecCCcceeEEEEccccCCCCCchhHH
Confidence 34589999996655 367889999999999975444 88877544432222322233333 233333333457777
Q ss_pred HHHHHhCCceeecc
Q 024433 120 PLCRELGIGIVPYS 133 (268)
Q Consensus 120 ~~~~~~gi~vi~~~ 133 (268)
....++|..+..|-
T Consensus 153 ~~la~~~aTm~I~L 166 (254)
T COG2875 153 AALAKHGATMVIFL 166 (254)
T ss_pred HHHHhcCceeEeee
Confidence 77777887655543
No 150
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=28.50 E-value=3.7e+02 Score=25.27 Aligned_cols=103 Identities=13% Similarity=0.143 Sum_probs=55.7
Q ss_pred CCCCHHHHHHHHHHHHhHcCCCcccEEEeccC--CC--CCCHHHHHHHHHHHHHcC-ceee---------eecCCCCHHH
Q 024433 25 VKGTPDYVRSCCEASLKRLDVDYIDLYYQHRV--DT--SVPIEETIGEMKKLVEEG-KIKY---------IGLSEASPDT 90 (268)
Q Consensus 25 ~~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~p--~~--~~~~~~~~~~l~~l~~~G-~ir~---------iGvs~~~~~~ 90 (268)
..++.+....-+ ..|.++|++.|.++ +.. +. ....+..|+.++.+++.. .++. +|.+++.-+.
T Consensus 21 ~~~~t~dkl~ia-~~Ld~~Gv~~IE~~--ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddv 97 (448)
T PRK12331 21 TRMTTEEMLPIL-EKLDNAGYHSLEMW--GGATFDACLRFLNEDPWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDV 97 (448)
T ss_pred cccCHHHHHHHH-HHHHHcCCCEEEec--CCccchhhhccCCCCHHHHHHHHHHhCCCCEEEEEeccccccccccCchhh
Confidence 467777666655 55899999999994 110 00 001122466666666642 2332 4555554333
Q ss_pred H----HHHhCCCCeeEecccccccccchhhhHHHHHHHhCCceee
Q 024433 91 I----RRAHGVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVP 131 (268)
Q Consensus 91 l----~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~vi~ 131 (268)
+ +++.+ ..++++.+-..+-+.+.-...+++++++|+.+.+
T Consensus 98 v~~~v~~A~~-~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~ 141 (448)
T PRK12331 98 VESFVQKSVE-NGIDIIRIFDALNDVRNLETAVKATKKAGGHAQV 141 (448)
T ss_pred HHHHHHHHHH-CCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEE
Confidence 3 33333 3455555544332222225788999999976543
No 151
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=28.42 E-value=1e+02 Score=27.16 Aligned_cols=49 Identities=18% Similarity=0.186 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHhHcCCCcc--cEEEeccCCCCCCHHHHHHHHHHHHHcCceee
Q 024433 29 PDYVRSCCEASLKRLDVDYI--DLYYQHRVDTSVPIEETIGEMKKLVEEGKIKY 80 (268)
Q Consensus 29 ~~~i~~~~e~SL~~L~~d~i--Dl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~ 80 (268)
.+.....+.+.+++||+.+- .-+.-+.+ .-.+.+.+.+.+|.++|.|-.
T Consensus 81 ~~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~---~~~~~v~~~f~~L~~~G~iY~ 131 (312)
T cd00668 81 VEEMSGEHKEDFRRLGISYDWSDEYITTEP---EYSKAVELIFSRLYEKGLIYR 131 (312)
T ss_pred HHHHHHHHHHHHHHhCccccCCCCeECCCH---HHHHHHHHHHHHHHHCCCEEe
Confidence 45677788999999999642 23333332 235678999999999999844
No 152
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=28.31 E-value=4.5e+02 Score=23.73 Aligned_cols=80 Identities=11% Similarity=0.227 Sum_probs=55.0
Q ss_pred CCcEEEEecccccCCCCCCccCCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCceeeeec
Q 024433 4 REKVQIATKFGVVGLRDNGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGL 83 (268)
Q Consensus 4 R~~~~I~tK~~~~~~~~~~~~~~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGv 83 (268)
..-++|.+|+-..+. ..+.+.+..-+.+.++..|....+++++.. -....++++++.+.+..+.+.+-.+|.
T Consensus 91 ~piilV~NK~DLl~k-------~~~~~~~~~~l~~~~k~~g~~~~~i~~vSA-k~g~gv~eL~~~l~~~~~~~~v~~vG~ 162 (360)
T TIGR03597 91 NPVLLVGNKIDLLPK-------SVNLSKIKEWMKKRAKELGLKPVDIILVSA-KKGNGIDELLDKIKKARNKKDVYVVGV 162 (360)
T ss_pred CCEEEEEEchhhCCC-------CCCHHHHHHHHHHHHHHcCCCcCcEEEecC-CCCCCHHHHHHHHHHHhCCCeEEEECC
Confidence 345788999865421 123566666666667778765446666644 444568889999988876678888999
Q ss_pred CCCCHHHH
Q 024433 84 SEASPDTI 91 (268)
Q Consensus 84 s~~~~~~l 91 (268)
+|-.-.-+
T Consensus 163 ~nvGKStl 170 (360)
T TIGR03597 163 TNVGKSSL 170 (360)
T ss_pred CCCCHHHH
Confidence 99866544
No 153
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=28.24 E-value=55 Score=27.55 Aligned_cols=99 Identities=16% Similarity=0.208 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHcCceeeeec----CCCCHHHHHHHhCCCCeeEecccccccccchhhhHHHHHHHhCCceeecccCCC
Q 024433 62 IEETIGEMKKLVEEGKIKYIGL----SEASPDTIRRAHGVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGR 137 (268)
Q Consensus 62 ~~~~~~~l~~l~~~G~ir~iGv----s~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~vi~~~pl~~ 137 (268)
.+++.++|+.++ +..|.. |.+....++.+++...+. .|.|+=.....+++...-+.|..++.-+.-+.
T Consensus 75 ve~L~~~l~~l~----~d~iv~GaI~s~yqk~rve~lc~~lGl~----~~~PLWg~d~~ell~e~~~~Gf~~~Iv~Vsa~ 146 (223)
T COG2102 75 VEELKEALRRLK----VDGIVAGAIASEYQKERVERLCEELGLK----VYAPLWGRDPEELLEEMVEAGFEAIIVAVSAE 146 (223)
T ss_pred HHHHHHHHHhCc----ccEEEEchhhhHHHHHHHHHHHHHhCCE----EeecccCCCHHHHHHHHHHcCCeEEEEEEecc
Confidence 344555555555 555544 333444556665544433 33444333336777777788888888778887
Q ss_pred cccCCcccccCCCCCcccccCCCCCCcchhhhHHHHHHHHHHHHhcCCCHH
Q 024433 138 GFFGGKAVVESVPADSILHFFPRYKGENLDRNKNIYFRIENLAKKYKCTSA 188 (268)
Q Consensus 138 GlL~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~ 188 (268)
|+-... ....+ ..+..+.+..++++||+.++
T Consensus 147 gL~~~~------------------lGr~i--~~~~~e~l~~l~~~ygi~~~ 177 (223)
T COG2102 147 GLDESW------------------LGRRI--DREFLEELKSLNRRYGIHPA 177 (223)
T ss_pred CCChHH------------------hCCcc--CHHHHHHHHHHHHhcCCCcc
Confidence 762111 00000 12345688899999998763
No 154
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=28.22 E-value=1.4e+02 Score=27.19 Aligned_cols=40 Identities=18% Similarity=0.390 Sum_probs=29.1
Q ss_pred hhHHHHHHHhCCceeecccCCCcccCCcccccCCCCCcccccCCCCCCcchhhhHHHHHHHHHHHHhcCCC
Q 024433 116 EEIIPLCRELGIGIVPYSPLGRGFFGGKAVVESVPADSILHFFPRYKGENLDRNKNIYFRIENLAKKYKCT 186 (268)
Q Consensus 116 ~~~~~~~~~~gi~vi~~~pl~~GlL~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s 186 (268)
..+++.|+++||.++.-+ +|. . | ....+.+.+++++.|++
T Consensus 61 ~~~L~~~~~~gIkvI~Na---Gg~-n-----------------p----------~~~a~~v~eia~e~Gl~ 100 (362)
T PF07287_consen 61 RPLLPAAAEKGIKVITNA---GGL-N-----------------P----------AGCADIVREIARELGLS 100 (362)
T ss_pred HHHHHHHHhCCCCEEEeC---CCC-C-----------------H----------HHHHHHHHHHHHhcCCC
Confidence 789999999999998853 232 0 1 12456889999998876
No 155
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=28.10 E-value=3e+02 Score=24.78 Aligned_cols=60 Identities=18% Similarity=0.235 Sum_probs=38.0
Q ss_pred CHHHHHHHHHHHHhHcCCCcccEEEeccCC-CCCCHHHH-HHHHHHHHHcCceeeeecCCCCHHHH
Q 024433 28 TPDYVRSCCEASLKRLDVDYIDLYYQHRVD-TSVPIEET-IGEMKKLVEEGKIKYIGLSEASPDTI 91 (268)
Q Consensus 28 ~~~~i~~~~e~SL~~L~~d~iDl~~lH~p~-~~~~~~~~-~~~l~~l~~~G~ir~iGvs~~~~~~l 91 (268)
+-+.+.++++..+++ |. .|+.+|||.. +..+.+++ +..|-.|.+.= ---+|+|.|+..-+
T Consensus 158 ~~~ei~~av~~~r~~-g~--~~i~LLhC~s~YPap~ed~NL~~i~~l~~~F-n~~vGlSDHT~g~~ 219 (347)
T COG2089 158 TIEEIEEAVAILREN-GN--PDIALLHCTSAYPAPFEDVNLKAIPKLAEAF-NAIVGLSDHTLGIL 219 (347)
T ss_pred cHHHHHHHHHHHHhc-CC--CCeEEEEecCCCCCCHHHhhHHHHHHHHHHh-CCccccccCccchh
Confidence 457788888666554 33 3999999974 33455542 45555554442 33599999987643
No 156
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=28.08 E-value=1.9e+02 Score=26.51 Aligned_cols=68 Identities=18% Similarity=0.084 Sum_probs=51.6
Q ss_pred HHHHHHHHHHcCce---eeeecCCCCHHHHHHHhCCCCeeEecccccccccc-hhhhHHHHHHHhCCceeec
Q 024433 65 TIGEMKKLVEEGKI---KYIGLSEASPDTIRRAHGVHPITAVQMEWSLWTRD-IEEEIIPLCRELGIGIVPY 132 (268)
Q Consensus 65 ~~~~l~~l~~~G~i---r~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~~~~~~~~~gi~vi~~ 132 (268)
.++.+.+|++.-.+ -.-|-+.++...+..+++...++++|+...-...- ....+...|+.+|+.+..+
T Consensus 247 d~~~~~~L~~~~~~~i~ia~gE~~~~~~~~~~li~~~a~Divq~d~~~~GGit~~~kia~lA~a~gi~~~pH 318 (394)
T PRK15440 247 DYWGYRELKRNAPAGMMVTSGEHEATLQGFRTLLEMGCIDIIQPDVGWCGGLTELVKIAALAKARGQLVVPH 318 (394)
T ss_pred cHHHHHHHHHhCCCCCceecCCCccCHHHHHHHHHcCCCCEEeCCccccCCHHHHHHHHHHHHHcCCeeccc
Confidence 46777888877542 23377888999999999998999999987765422 1268899999999997664
No 157
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=27.71 E-value=2.3e+02 Score=26.01 Aligned_cols=82 Identities=12% Similarity=0.071 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHcCceeeeecCCCCHHHHHHHhCC-CCeeEecccccccccchh-hhHHHHHHHhC-CceeecccCCCc
Q 024433 62 IEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGV-HPITAVQMEWSLWTRDIE-EEIIPLCRELG-IGIVPYSPLGRG 138 (268)
Q Consensus 62 ~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~-~~~~~~~~~~g-i~vi~~~pl~~G 138 (268)
+..+.+.++++....-|...=+...+.+.++++++. ....++..+-|+...-.+ ..+.+.|+++| +.++.=.+++.+
T Consensus 104 Y~~t~~~~~~~l~~~gv~v~~~d~~d~~~l~~~l~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~atp 183 (386)
T PF01053_consen 104 YGGTYRLLEELLPRFGVEVTFVDPTDLEALEAALRPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFATP 183 (386)
T ss_dssp SHHHHHHHHHCHHHTTSEEEEESTTSHHHHHHHHCTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTHT
T ss_pred cCcchhhhhhhhcccCcEEEEeCchhHHHHHhhccccceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccccce
Confidence 456777777655554454444455678888888774 567778888998876655 78899999998 999999988877
Q ss_pred ccCCc
Q 024433 139 FFGGK 143 (268)
Q Consensus 139 lL~g~ 143 (268)
++..+
T Consensus 184 ~~~~p 188 (386)
T PF01053_consen 184 YNQNP 188 (386)
T ss_dssp TTC-G
T ss_pred eeecc
Confidence 65543
No 158
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=27.60 E-value=4.6e+02 Score=23.66 Aligned_cols=92 Identities=12% Similarity=0.128 Sum_probs=57.8
Q ss_pred CCCcEEEEecccccCCC----CC--CccCCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHH-c
Q 024433 3 PREKVQIATKFGVVGLR----DN--GVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVE-E 75 (268)
Q Consensus 3 ~R~~~~I~tK~~~~~~~----~~--~~~~~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~-~ 75 (268)
.|..++|+|-.|..... .+ +.....+.+.+..++.......+++.| .++-.-.+....+.+.++++.+.+ .
T Consensus 101 ~~~t~cvSsq~GC~~~C~FC~tg~~~~~r~lt~~EI~~qv~~~~~~~~i~~I--vfmG~GEPl~n~~~vi~~l~~l~~~~ 178 (349)
T PRK14463 101 DRNTLCISSQVGCAMGCAFCLTGTFRLTRNLTTAEIVNQVCAVKRDVPVRNI--VFMGMGEPLANLDNVIPALQILTDPD 178 (349)
T ss_pred CCcEEEEEecCCcCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCccEE--EEecCCcchhcHHHHHHHHHHhhccc
Confidence 36778888887765432 11 223457899999999887766665543 444433344456788999998885 5
Q ss_pred Cc---eeeeecCCCC-HHHHHHHhC
Q 024433 76 GK---IKYIGLSEAS-PDTIRRAHG 96 (268)
Q Consensus 76 G~---ir~iGvs~~~-~~~l~~~~~ 96 (268)
|. .+.+.||+-. ...+.++..
T Consensus 179 gl~~s~r~itVsTnGl~~~i~~l~~ 203 (349)
T PRK14463 179 GLQFSTRKVTVSTSGLVPEMEELGR 203 (349)
T ss_pred ccCcCCceEEEECCCchHHHHHHhh
Confidence 65 4667766553 345555544
No 159
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=27.49 E-value=2.4e+02 Score=24.73 Aligned_cols=117 Identities=14% Similarity=0.169 Sum_probs=68.9
Q ss_pred HHHHHHHHcCceeeeecCCCCHHHHHHHhCC----CCeeEeccccccccc---chhhhHHHHHHHhCCceeecccCCCcc
Q 024433 67 GEMKKLVEEGKIKYIGLSEASPDTIRRAHGV----HPITAVQMEWSLWTR---DIEEEIIPLCRELGIGIVPYSPLGRGF 139 (268)
Q Consensus 67 ~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~----~~~~~~q~~~n~~~~---~~~~~~~~~~~~~gi~vi~~~pl~~Gl 139 (268)
+.++.+....++..+--++.+.+.+.++++. .+..-..+ +|-... ..+....+.+++-++-++.-+.=.+
T Consensus 145 ~d~~~l~~~~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~-~nTIC~AT~~RQ~a~~~la~~vD~miVVGg~nSs-- 221 (280)
T TIGR00216 145 EDLENFKVEDLLGVVSQTTLSQEDTKEIVAELKARVPQKEVPV-FNTICYATQNRQDAVKELAPEVDLMIVIGGKNSS-- 221 (280)
T ss_pred HHHHhCCCCCcEEEEEcCCCcHHHHHHHHHHHHHhCCCcCCCC-CCCcccccHHHHHHHHHHHhhCCEEEEECCCCCc--
Confidence 3344443345566666667777766554432 11011111 222211 1236777788777765554222110
Q ss_pred cCCcccccCCCCCcccccCCCCCCcchhhhHHHHHHHHHHHHhcCC------CHHHHHHHHHhcCCCCeeeecCCCChHH
Q 024433 140 FGGKAVVESVPADSILHFFPRYKGENLDRNKNIYFRIENLAKKYKC------TSAQLALAWVLGQGDDVVPIPGTTKIKN 213 (268)
Q Consensus 140 L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~------s~~qlal~~~l~~~~v~~vivg~~~~~~ 213 (268)
. -.+|.++|+++|. ++.++-..|.-... ...+..|+|+|+.
T Consensus 222 ---N-----------------------------T~rL~ei~~~~~~~t~~Ie~~~el~~~~l~~~~-~VGiTAGASTP~~ 268 (280)
T TIGR00216 222 ---N-----------------------------TTRLYEIAEEHGPPSYLIETAEELPEEWLKGVK-VVGITAGASTPDW 268 (280)
T ss_pred ---h-----------------------------HHHHHHHHHHhCCCEEEECChHHCCHHHhCCCC-EEEEEecCCCCHH
Confidence 0 0379999999885 67889899987665 4688899999998
Q ss_pred HHHHHh
Q 024433 214 LDDNID 219 (268)
Q Consensus 214 l~~nl~ 219 (268)
+.+.+-
T Consensus 269 li~eVi 274 (280)
T TIGR00216 269 IIEEVI 274 (280)
T ss_pred HHHHHH
Confidence 877653
No 160
>PRK04930 glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional
Probab=27.46 E-value=3.4e+02 Score=22.06 Aligned_cols=34 Identities=3% Similarity=-0.100 Sum_probs=30.0
Q ss_pred CCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCC
Q 024433 26 KGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTS 59 (268)
Q Consensus 26 ~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~p~~~ 59 (268)
.++.+.+...++.+++-+|.+++..+.+|.+...
T Consensus 126 ~~~~~~ll~p~~~~~~~~Gm~~~~~~~~~~~~~~ 159 (184)
T PRK04930 126 RYPMSDILRPFELTAAMCRMHWLSPIIIYWARRQ 159 (184)
T ss_pred CCCHHHHHHHHHHHHHHcCCeEcCcEEEecCCCC
Confidence 4678889999999999999999999999997543
No 161
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=27.37 E-value=2.4e+02 Score=26.32 Aligned_cols=89 Identities=17% Similarity=0.237 Sum_probs=56.9
Q ss_pred HHhHcCCCcccEEEeccCCC-CCCHHHHHHHHHHHHHcCceeeeecCCCCHHHHHHHhC--------CCCeeEecccccc
Q 024433 39 SLKRLDVDYIDLYYQHRVDT-SVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHG--------VHPITAVQMEWSL 109 (268)
Q Consensus 39 SL~~L~~d~iDl~~lH~p~~-~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~--------~~~~~~~q~~~n~ 109 (268)
.++.+|++|. ++..|.. .....++. ..+=+.|-+..+|..+.+++++.+.+. ..+|-+|.+ .++
T Consensus 6 f~~~lgiryP---ii~gpMa~Giss~eLV---aAvs~AGgLG~lgag~l~~e~l~~~I~~ir~~lt~~~PfGVNL~-~~~ 78 (418)
T cd04742 6 FKEDYGLRYA---YVAGAMARGIASAELV---VAMGKAGMLGFFGAGGLPLDEVEQAIERIQAALGNGEPYGVNLI-HSP 78 (418)
T ss_pred HHHHhCCCcc---EECCcccCCCCCHHHH---HHHHhCCCeeeecCCCCCHHHHHHHHHHHHHhccCCCCeEEeee-cCC
Confidence 3566777764 3444443 22333333 344578999999999999988765443 246777765 333
Q ss_pred cccchhhhHHHHHHHhCCceeeccc
Q 024433 110 WTRDIEEEIIPLCRELGIGIVPYSP 134 (268)
Q Consensus 110 ~~~~~~~~~~~~~~~~gi~vi~~~p 134 (268)
-++..+...++.+.++||.++..+.
T Consensus 79 ~~~~~e~~~v~l~le~gV~~ve~sa 103 (418)
T cd04742 79 DEPELEEGLVDLFLRHGVRVVEASA 103 (418)
T ss_pred CCchhHHHHHHHHHHcCCCEEEecc
Confidence 2333346789999999998776654
No 162
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=26.86 E-value=3.4e+02 Score=22.94 Aligned_cols=71 Identities=13% Similarity=0.094 Sum_probs=50.8
Q ss_pred CCCCHHHHHHHHHHHHhHcCC--------------------------CcccEEEeccCCCCCCH---HHHHHHHHHHHHc
Q 024433 25 VKGTPDYVRSCCEASLKRLDV--------------------------DYIDLYYQHRVDTSVPI---EETIGEMKKLVEE 75 (268)
Q Consensus 25 ~~~~~~~i~~~~e~SL~~L~~--------------------------d~iDl~~lH~p~~~~~~---~~~~~~l~~l~~~ 75 (268)
++.+...++..+++.-++|+. ...+++.+..|....++ ...-+.+..++.+
T Consensus 103 ~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~e 182 (245)
T COG4555 103 NGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNE 182 (245)
T ss_pred hhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcC
Confidence 455566667777777777665 34567777777655543 3567788888888
Q ss_pred CceeeeecCCCCHHHHHHHhCC
Q 024433 76 GKIKYIGLSEASPDTIRRAHGV 97 (268)
Q Consensus 76 G~ir~iGvs~~~~~~l~~~~~~ 97 (268)
|++ +=+|+|..++++++++.
T Consensus 183 gr~--viFSSH~m~EvealCDr 202 (245)
T COG4555 183 GRA--VIFSSHIMQEVEALCDR 202 (245)
T ss_pred CcE--EEEecccHHHHHHhhhe
Confidence 885 88899999999988763
No 163
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=26.84 E-value=98 Score=28.41 Aligned_cols=107 Identities=16% Similarity=0.175 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHhHcCCCcccEEEeccCCCC-----------------------CCH--HHHHHHHHHHHHcC-ceeeeec
Q 024433 30 DYVRSCCEASLKRLDVDYIDLYYQHRVDTS-----------------------VPI--EETIGEMKKLVEEG-KIKYIGL 83 (268)
Q Consensus 30 ~~i~~~~e~SL~~L~~d~iDl~~lH~p~~~-----------------------~~~--~~~~~~l~~l~~~G-~ir~iGv 83 (268)
+.++++=++.-+-||.+-=++++.-.-... ... ..+++.+..|.++| .|.|+.|
T Consensus 44 ~~ve~AR~~iA~llga~~~eIiFTSG~TEsnNlaI~g~~~a~~~~~~~~HIIts~iEH~aVl~~~~~Le~~g~~Vtyl~V 123 (386)
T COG1104 44 KAVEEAREQIAKLLGADPEEIIFTSGATESNNLAIKGAALAYRNAQKGKHIITSAIEHPAVLNTCRYLERQGFEVTYLPV 123 (386)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEecCCcHHHHHHHHhhHHhhhcccCCCeEEEcccccHHHHHHHHHHHhcCCeEEEeCC
Confidence 334444444455668887777776654210 011 24788888887788 8999999
Q ss_pred CCC---CHHHHHHHhCCC-CeeEecccccccc-cchhhhHHHHHHHhCCceeecccCC
Q 024433 84 SEA---SPDTIRRAHGVH-PITAVQMEWSLWT-RDIEEEIIPLCRELGIGIVPYSPLG 136 (268)
Q Consensus 84 s~~---~~~~l~~~~~~~-~~~~~q~~~n~~~-~~~~~~~~~~~~~~gi~vi~~~pl~ 136 (268)
... +++++++++... ...++|.--|-.- -++-.++-+.|+++|+-++.-..-+
T Consensus 124 ~~~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQpI~ei~~i~k~~~i~fHvDAvQa 181 (386)
T COG1104 124 DSNGLVDLEQLEEALRPDTILVSIMHANNETGTIQPIAEIGEICKERGILFHVDAVQA 181 (386)
T ss_pred CCCCeEcHHHHHHhcCCCceEEEEEecccCeeecccHHHHHHHHHHcCCeEEEehhhh
Confidence 866 667788887642 2344433222211 1123789999999987765544333
No 164
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=26.73 E-value=3.8e+02 Score=24.10 Aligned_cols=87 Identities=13% Similarity=0.111 Sum_probs=53.2
Q ss_pred EEeccCCCC-----------CCHHHHHHHHHHHHHcCc---eeeeecC--CCCHHH---HHHHhCCCCeeEecccccccc
Q 024433 51 YYQHRVDTS-----------VPIEETIGEMKKLVEEGK---IKYIGLS--EASPDT---IRRAHGVHPITAVQMEWSLWT 111 (268)
Q Consensus 51 ~~lH~p~~~-----------~~~~~~~~~l~~l~~~G~---ir~iGvs--~~~~~~---l~~~~~~~~~~~~q~~~n~~~ 111 (268)
+-||.+++. .+++++++++..+.+.|+ ++|+=+. |.+.++ +.+++...+..++.++||+..
T Consensus 208 iSLhA~~~e~r~~I~p~~~~~~le~il~ai~~~~~~~rri~ieyvLI~GvNDseeda~~La~llk~l~~~vnlI~~N~~~ 287 (336)
T PRK14470 208 ISLNAAIPWKRRALMPIEQGFPLDELVEAIREHAALRGRVTLEYVMISGVNVGEEDAAALGRLLAGIPVRLNPIAVNDAT 287 (336)
T ss_pred EecCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhCCCeEEEEEEEecccCCHHHHHHHHHHHhcCCCeEEEeccCCCC
Confidence 567887442 346788888888887644 2343222 334444 555566567789999999844
Q ss_pred cc----hh---hhHHHHH--HHhCCceeecccCCC
Q 024433 112 RD----IE---EEIIPLC--RELGIGIVPYSPLGR 137 (268)
Q Consensus 112 ~~----~~---~~~~~~~--~~~gi~vi~~~pl~~ 137 (268)
.. .. ..+.+.. +.+|+.+..+...+.
T Consensus 288 ~~~~~p~~~~i~~f~~~l~~~~~g~~~~~R~~~G~ 322 (336)
T PRK14470 288 GRYRPPDEDEWNAFRDALARELPGTPVVRRYSGGQ 322 (336)
T ss_pred CCccCCCHHHHHHHHHHHHHccCCeEEEEECCCCC
Confidence 32 11 3444555 255888888777764
No 165
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=26.52 E-value=4.7e+02 Score=23.42 Aligned_cols=69 Identities=10% Similarity=0.048 Sum_probs=52.7
Q ss_pred HHHHHHHHHHc--Cce-eeeecCCCCHHHHHHHhCCCCeeEecccccccccc-hhhhHHHHHHHhCCceeecc
Q 024433 65 TIGEMKKLVEE--GKI-KYIGLSEASPDTIRRAHGVHPITAVQMEWSLWTRD-IEEEIIPLCRELGIGIVPYS 133 (268)
Q Consensus 65 ~~~~l~~l~~~--G~i-r~iGvs~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~~~~~~~~~gi~vi~~~ 133 (268)
-++.+.+++++ -.| -..|=+.++...+.++++....+++|+...-.-.- ....+...|+.+|+.++.+.
T Consensus 221 d~~~~~~l~~~~~~~iPIa~gE~~~~~~~~~~li~~~a~div~~d~~~~GGit~~~~ia~~A~a~gi~~~~h~ 293 (352)
T cd03328 221 DLAGLRLVRERGPAGMDIAAGEYAYTLAYFRRLLEAHAVDVLQADVTRCGGVTGFLQAAALAAAHHVDLSAHC 293 (352)
T ss_pred hHHHHHHHHhhCCCCCCEEecccccCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCeeccCc
Confidence 47778888877 322 24677888999999999988899999988765422 22689999999999988753
No 166
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=26.34 E-value=34 Score=32.05 Aligned_cols=28 Identities=32% Similarity=0.317 Sum_probs=22.4
Q ss_pred HHhcCCCHHHHHHHHHhcCC-CCeeeecC
Q 024433 180 AKKYKCTSAQLALAWVLGQG-DDVVPIPG 207 (268)
Q Consensus 180 a~~~~~s~~qlal~~~l~~~-~v~~vivg 207 (268)
|.-||+|.+.-.|.|+++.. --.++++|
T Consensus 113 aGTHGKTTTTsmla~vl~~~gldPtf~iG 141 (459)
T COG0773 113 AGTHGKTTTTSMLAWVLEAAGLDPTFLIG 141 (459)
T ss_pred eCCCCchhHHHHHHHHHHhCCCCCEEEEC
Confidence 45799999999999999877 34477777
No 167
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=26.33 E-value=2.3e+02 Score=27.34 Aligned_cols=74 Identities=20% Similarity=0.120 Sum_probs=52.9
Q ss_pred CCHHHHHHHHHHHHHcCceeeeecCCCCHHHHHHHhCCCCeeEe---cccccccccchhhhHHHHHHHhCCceeecccCC
Q 024433 60 VPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVHPITAV---QMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLG 136 (268)
Q Consensus 60 ~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~---q~~~n~~~~~~~~~~~~~~~~~gi~vi~~~pl~ 136 (268)
.+..++.+.+.+.++..+|+.+|+-.+...++..++....+..+ |--+++-.+ -..++..-..|.-+..-.|+.
T Consensus 410 id~~~I~ew~~~~~~~~~i~~v~~D~~g~~~~~~~l~~~g~~lv~i~Q~~~~l~~~---~k~~e~~~~~g~i~~~dnp~m 486 (546)
T COG4626 410 IDYAEIVEWFMEIREKFLIKLVGFDPSGAGEFRDALAEAGIKVVGIPQGFKKLSGA---IKTIERKLAEGVLVHGDNPLM 486 (546)
T ss_pred cCHHHHHHHHHHHHHhCCccEEeecccchHHHHHHHHhCCCceeeccchhhhhCch---hHHHHHHHhcCcEEECCCcHH
Confidence 45678999999999999999999999999998888877554433 332222111 455666666777777766664
No 168
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=26.05 E-value=1.6e+02 Score=21.59 Aligned_cols=52 Identities=12% Similarity=0.072 Sum_probs=31.3
Q ss_pred CCCHHHHHHHhCCCCeeEecccccccccchhhhHHHHHHHhCCceeecccCC
Q 024433 85 EASPDTIRRAHGVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLG 136 (268)
Q Consensus 85 ~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~vi~~~pl~ 136 (268)
.-+.+++..++...+++++-+.-.--.+.+..++.++++++||++..+..-+
T Consensus 38 ~l~~~~l~~~~~~~~peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~T~a 89 (109)
T cd00248 38 DLDPEALLPLLAEDRPDILLIGTGAEIAFLPRALRAALRAAGIGVEVMSTGA 89 (109)
T ss_pred cCCHHHHHHHHhhCCCCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeCcHH
Confidence 3345555555443335555554333333344788899999999998876553
No 169
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=25.63 E-value=1.9e+02 Score=27.56 Aligned_cols=64 Identities=19% Similarity=0.155 Sum_probs=45.0
Q ss_pred HHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCceeeeecCCCCHHHHHHHhCC---CCeeEecccc
Q 024433 37 EASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGV---HPITAVQMEW 107 (268)
Q Consensus 37 e~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~---~~~~~~q~~~ 107 (268)
++.-+|+.+.|+|.+- .+++++++..++.+++|+...||+-.--.+.+.++++. +.+.+-|...
T Consensus 191 ~ri~kR~~~g~ld~~~-------~~ldea~~~~~ea~~~~~~~SIg~~GN~ad~~~~l~~~~i~pDl~tDQTS~ 257 (546)
T PF01175_consen 191 SRIEKRLEQGYLDEVT-------DDLDEALARAKEARAKKEPLSIGLLGNAADLWEELVERGIIPDLVTDQTSA 257 (546)
T ss_dssp HHHHHHHHTTSSSEEE-------SSHHHHHHHHHHHHHTT--EEEEEES-HHHHHHHHHHTT---SEE---SST
T ss_pred HHHHHHHhCCCeeEEc-------CCHHHHHHHHHHhhccCCeeEEEEeccHHHHHHHHHHcCCCCCcccCCCcc
Confidence 3455678888999763 46899999999999999999999988777888887765 3455557643
No 170
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=25.54 E-value=5.3e+02 Score=23.65 Aligned_cols=77 Identities=12% Similarity=0.094 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHcCceeeeecCCCCHHHHHHHhCC-CCeeEecccccccccchh-hhHHHHHHHhCCceeecccCCCcc
Q 024433 63 EETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGV-HPITAVQMEWSLWTRDIE-EEIIPLCRELGIGIVPYSPLGRGF 139 (268)
Q Consensus 63 ~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~-~~~~~~~~~~gi~vi~~~pl~~Gl 139 (268)
..++..++.+.+.+-++.+-+...+.+.+++++.. ....++..+-|+.....+ ..+.+.|+++|+-++.=...+.|.
T Consensus 110 ~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~~~ 188 (405)
T PRK08776 110 GGSWRLFNALAKKGHFALITADLTDPRSLADALAQSPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLSPA 188 (405)
T ss_pred hHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCcccc
Confidence 34555555555555566666665677888877643 344455556676554322 688999999999988877766543
No 171
>PF01476 LysM: LysM domain; InterPro: IPR018392 This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation []. This domain may have a general peptidoglycan binding function.; GO: 0016998 cell wall macromolecule catabolic process; PDB: 2DJP_A 3ZQD_A 1Y7M_B 4A52_A 2L9Y_A 1E0G_A.
Probab=25.19 E-value=74 Score=18.51 Aligned_cols=18 Identities=22% Similarity=0.309 Sum_probs=12.8
Q ss_pred HHHHHHHHhcCCCHHHHH
Q 024433 174 FRIENLAKKYKCTSAQLA 191 (268)
Q Consensus 174 ~~l~~la~~~~~s~~qla 191 (268)
+.+..||.++|++..++.
T Consensus 7 Dtl~~IA~~~~~~~~~l~ 24 (44)
T PF01476_consen 7 DTLWSIAKRYGISVDELM 24 (44)
T ss_dssp --HHHHHHHTTS-HHHHH
T ss_pred CcHHHHHhhhhhhHhHHH
Confidence 478999999999888754
No 172
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=24.70 E-value=4.1e+02 Score=24.01 Aligned_cols=102 Identities=11% Similarity=0.024 Sum_probs=60.2
Q ss_pred CCCcEEEEecccccCCCC------CCccCCCCHHHHHHHHHHHHhHcCCCcccEEEecc-CCCCCCHHHHHHHHHHHHHc
Q 024433 3 PREKVQIATKFGVVGLRD------NGVIVKGTPDYVRSCCEASLKRLDVDYIDLYYQHR-VDTSVPIEETIGEMKKLVEE 75 (268)
Q Consensus 3 ~R~~~~I~tK~~~~~~~~------~~~~~~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~-p~~~~~~~~~~~~l~~l~~~ 75 (268)
.|..++|||-+|...... .+....++++.|..++...-+.-+ ++-+.+-. =.+...++.++++++.+.+.
T Consensus 101 ~r~t~cvSsQvGC~~~C~FC~Tg~~g~~rnLt~~EIl~Qv~~~~~~~~---i~nIvfmGmGEPL~N~d~vi~al~~l~~~ 177 (345)
T PRK14466 101 DRATLCVSSQVGCKMNCLFCMTGKQGFTGNLTAAQILNQIYSLPERDK---LTNLVFMGMGEPLDNLDEVLKALEILTAP 177 (345)
T ss_pred CceEEEEEcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHhhhhcCC---CCeEEEeeeCcCcccHHHHHHHHHHHhhc
Confidence 367789999888765421 122345889999999876632212 33333322 22334467899999998876
Q ss_pred Cce----eeeecCCCCHH-HHHHHhCCCCeeEeccccc
Q 024433 76 GKI----KYIGLSEASPD-TIRRAHGVHPITAVQMEWS 108 (268)
Q Consensus 76 G~i----r~iGvs~~~~~-~l~~~~~~~~~~~~q~~~n 108 (268)
.-. |.|-||+-... .+.++..... ....+.+|
T Consensus 178 ~g~~~s~r~ItVsT~G~~~~i~~l~~~~~-~~LavSLh 214 (345)
T PRK14466 178 YGYGWSPKRITVSTVGLKKGLKRFLEESE-CHLAISLH 214 (345)
T ss_pred cccCcCCceEEEEcCCCchHHHHHhhccC-cEEEEEcC
Confidence 433 57777777643 3666554333 23345555
No 173
>TIGR03070 couple_hipB transcriptional regulator, y4mF family. Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems.
Probab=24.64 E-value=84 Score=19.21 Aligned_cols=23 Identities=26% Similarity=0.105 Sum_probs=13.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhc
Q 024433 175 RIENLAKKYKCTSAQLALAWVLG 197 (268)
Q Consensus 175 ~l~~la~~~~~s~~qlal~~~l~ 197 (268)
.+..+.++.|+|..++|-+--++
T Consensus 6 ~l~~~r~~~gltq~~lA~~~gvs 28 (58)
T TIGR03070 6 LVRARRKALGLTQADLADLAGVG 28 (58)
T ss_pred HHHHHHHHcCCCHHHHHHHhCCC
Confidence 45556666677776666554433
No 174
>PF09989 DUF2229: CoA enzyme activase uncharacterised domain (DUF2229); InterPro: IPR018709 Proteins containing this domain include various bacterial hypothetical proteins, as well as CoA enzyme activases. The exact function of this domain has not, as yet, been defined.
Probab=24.38 E-value=1.5e+02 Score=24.89 Aligned_cols=35 Identities=17% Similarity=0.264 Sum_probs=27.4
Q ss_pred CeeEecc--cccccccchhhhHHHHHHHhCCceeecc
Q 024433 99 PITAVQM--EWSLWTRDIEEEIIPLCRELGIGIVPYS 133 (268)
Q Consensus 99 ~~~~~q~--~~n~~~~~~~~~~~~~~~~~gi~vi~~~ 133 (268)
...++-+ +||++++....++.+..++.|+.|+...
T Consensus 183 ~~~Ivl~GrpY~~~D~~in~~I~~~l~~~G~~vit~d 219 (221)
T PF09989_consen 183 KPAIVLLGRPYNIYDPFINMGIPDKLRSLGVPVITED 219 (221)
T ss_pred CceEEEEcCCCcCCCcccCCchHHHHHHCCCeeeCcc
Confidence 3444444 8999998888899999999999988643
No 175
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=23.99 E-value=4.5e+02 Score=22.31 Aligned_cols=98 Identities=18% Similarity=0.171 Sum_probs=58.6
Q ss_pred CCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcC-ceeeeecCCCCHHHHHHHhCCCCeeEe
Q 024433 25 VKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEG-KIKYIGLSEASPDTIRRAHGVHPITAV 103 (268)
Q Consensus 25 ~~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G-~ir~iGvs~~~~~~l~~~~~~~~~~~~ 103 (268)
..++.+...+-+ +.|.++|+++|++-+ |.. -+.-++.++.+.+.+ .++..+....+...++.+.+.. ++.+
T Consensus 15 ~~~~~~~k~~i~-~~L~~~Gv~~iE~g~---p~~---~~~~~e~~~~l~~~~~~~~~~~~~r~~~~~v~~a~~~g-~~~i 86 (259)
T cd07939 15 VAFSREEKLAIA-RALDEAGVDEIEVGI---PAM---GEEEREAIRAIVALGLPARLIVWCRAVKEDIEAALRCG-VTAV 86 (259)
T ss_pred CCCCHHHHHHHH-HHHHHcCCCEEEEec---CCC---CHHHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHhCC-cCEE
Confidence 456677555555 569999999999963 321 122345666666633 3666677667778887777652 3333
Q ss_pred ccccccccc--------ch------hhhHHHHHHHhCCcee
Q 024433 104 QMEWSLWTR--------DI------EEEIIPLCRELGIGIV 130 (268)
Q Consensus 104 q~~~n~~~~--------~~------~~~~~~~~~~~gi~vi 130 (268)
.+.++.-+. .. -...++.|+++|+.+.
T Consensus 87 ~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~ 127 (259)
T cd07939 87 HISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVS 127 (259)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE
Confidence 332221111 10 1467889999998765
No 176
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=23.73 E-value=2.4e+02 Score=26.12 Aligned_cols=39 Identities=23% Similarity=0.330 Sum_probs=26.8
Q ss_pred HHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCceee
Q 024433 36 CEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKY 80 (268)
Q Consensus 36 ~e~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~ 80 (268)
+++..++|.-.-.+++.+|.-... =++||+|.++|.+..
T Consensus 200 V~~~~~~Le~~G~Ev~VFHAtG~G------G~aME~Li~~G~~~~ 238 (403)
T PF06792_consen 200 VDAIRERLEEEGYEVLVFHATGTG------GRAMERLIREGQFDG 238 (403)
T ss_pred HHHHHHHHHhcCCeEEEEcCCCCc------hHHHHHHHHcCCcEE
Confidence 334444444334699999996544 368999999999854
No 177
>TIGR01378 thi_PPkinase thiamine pyrophosphokinase. This model has been revised. Originally, it described strictly eukaryotic thiamine pyrophosphokinase. However, it is now expanded to include also homologous enzymes, apparently functionally equivalent, from species that rely on thiamine pyrophosphokinase rather than thiamine-monophosphate kinase (TIGR01379) to produce the active TPP cofactor. This includes the thiamine pyrophosphokinase from Bacillus subtilis, previously designated YloS.
Probab=23.29 E-value=1.5e+02 Score=24.35 Aligned_cols=40 Identities=30% Similarity=0.480 Sum_probs=32.1
Q ss_pred hcCCCHHHHHHHHHhcCCCCeeeecCCC--ChHHHHHHHhhc
Q 024433 182 KYKCTSAQLALAWVLGQGDDVVPIPGTT--KIKNLDDNIDSL 221 (268)
Q Consensus 182 ~~~~s~~qlal~~~l~~~~v~~vivg~~--~~~~l~~nl~~~ 221 (268)
+...|=.++||+|++.++.-..++.|+. +.+|.-.|+..+
T Consensus 69 eKD~TD~e~Al~~~~~~~~~~i~i~Ga~GgR~DH~lani~~L 110 (203)
T TIGR01378 69 EKDTTDLELALKYALERGADEITILGATGGRLDHTLANLNLL 110 (203)
T ss_pred CCCCCHHHHHHHHHHHCCCCEEEEEcCCCCcHHHHHHHHHHH
Confidence 3455778999999999887678888764 888999998865
No 178
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=23.14 E-value=5.1e+02 Score=23.00 Aligned_cols=39 Identities=13% Similarity=0.135 Sum_probs=20.9
Q ss_pred HHHHHHHHcCceeeeecCCC-CHHHHHHHhCCCCeeEecc
Q 024433 67 GEMKKLVEEGKIKYIGLSEA-SPDTIRRAHGVHPITAVQM 105 (268)
Q Consensus 67 ~~l~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~~~q~ 105 (268)
+.++++++.-.+--+++.+. +++.++++++....|.+++
T Consensus 280 ~~~~~ir~~~~iPVi~~G~i~t~~~a~~~l~~g~aD~V~~ 319 (336)
T cd02932 280 PFAERIRQEAGIPVIAVGLITDPEQAEAILESGRADLVAL 319 (336)
T ss_pred HHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHcCCCCeehh
Confidence 34444555444544555554 5566666666555555554
No 179
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=23.01 E-value=1.8e+02 Score=24.04 Aligned_cols=88 Identities=9% Similarity=0.165 Sum_probs=54.8
Q ss_pred CHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCceeeeecCCC-CHHHHHHHhCCCCeeEeccc
Q 024433 28 TPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEA-SPDTIRRAHGVHPITAVQME 106 (268)
Q Consensus 28 ~~~~i~~~~e~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~~~q~~ 106 (268)
+++.....+ +.|-+-|+..+.+=+= .....+.+++++++..=-.||..+- +.+++.++++.+- ++-
T Consensus 14 ~~~~a~~ia-~al~~gGi~~iEit~~--------tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA----~Fi 80 (201)
T PRK06015 14 DVEHAVPLA-RALAAGGLPAIEITLR--------TPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGS----RFI 80 (201)
T ss_pred CHHHHHHHH-HHHHHCCCCEEEEeCC--------CccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCC----CEE
Confidence 455555554 5556778777666541 1224455555555433245888765 8888888887543 222
Q ss_pred ccccccchhhhHHHHHHHhCCceee
Q 024433 107 WSLWTRDIEEEIIPLCRELGIGIVP 131 (268)
Q Consensus 107 ~n~~~~~~~~~~~~~~~~~gi~vi~ 131 (268)
.++ ..+.+++++|+++||.++.
T Consensus 81 vSP---~~~~~vi~~a~~~~i~~iP 102 (201)
T PRK06015 81 VSP---GTTQELLAAANDSDVPLLP 102 (201)
T ss_pred ECC---CCCHHHHHHHHHcCCCEeC
Confidence 233 3347999999999998775
No 180
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=23.00 E-value=4e+02 Score=21.38 Aligned_cols=99 Identities=10% Similarity=0.057 Sum_probs=55.0
Q ss_pred CCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcC--ceeeeecCCCCHHHHHHHhCCCCeeEec
Q 024433 27 GTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEG--KIKYIGLSEASPDTIRRAHGVHPITAVQ 104 (268)
Q Consensus 27 ~~~~~i~~~~e~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G--~ir~iGvs~~~~~~l~~~~~~~~~~~~q 104 (268)
.+...+.+.+ +.+.+.|.|+|-+-....+... .....++.++++++.. .+. +++-..+.....+.+.....+.+|
T Consensus 8 ~~~~~~~~~~-~~~~~~g~d~i~~~~~Dg~~~~-~~~~~~~~v~~i~~~~~~~v~-v~lm~~~~~~~~~~~~~~gadgv~ 84 (210)
T TIGR01163 8 ADFARLGEEV-KAVEEAGADWIHVDVMDGHFVP-NLTFGPPVLEALRKYTDLPID-VHLMVENPDRYIEDFAEAGADIIT 84 (210)
T ss_pred CCHHHHHHHH-HHHHHcCCCEEEEcCCCCCCCC-CcccCHHHHHHHHhcCCCcEE-EEeeeCCHHHHHHHHHHcCCCEEE
Confidence 4456666666 4455888887666532222211 1113445555555533 332 566666666665555556678877
Q ss_pred ccccccccchhhhHHHHHHHhCCcee
Q 024433 105 MEWSLWTRDIEEEIIPLCRELGIGIV 130 (268)
Q Consensus 105 ~~~n~~~~~~~~~~~~~~~~~gi~vi 130 (268)
+....- ......++.+++.|+.+.
T Consensus 85 vh~~~~--~~~~~~~~~~~~~g~~~~ 108 (210)
T TIGR01163 85 VHPEAS--EHIHRLLQLIKDLGAKAG 108 (210)
T ss_pred EccCCc--hhHHHHHHHHHHcCCcEE
Confidence 755432 212567778888887643
No 181
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=22.78 E-value=2.2e+02 Score=21.86 Aligned_cols=55 Identities=24% Similarity=0.188 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCceeeeecCC
Q 024433 26 KGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE 85 (268)
Q Consensus 26 ~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGvs~ 85 (268)
..+.+.+...+++.++.- -+.-.+=..|...++..+.+.|+.+++.|. ..+|+.+
T Consensus 80 ~v~~~~L~~~L~~~~~~~----~~~~V~I~aD~~~~~~~vv~vmd~l~~aG~-~~v~l~t 134 (141)
T PRK11267 80 PVTDETMITALDALTEGK----KDTTIFFRADKTVDYETLMKVMDTLHQAGY-LKIGLVG 134 (141)
T ss_pred cccHHHHHHHHHHHHhcC----CCceEEEEcCCCCCHHHHHHHHHHHHHcCC-CeEEEEe
Confidence 345566666666544322 233333345777889999999999999994 4677754
No 182
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=22.33 E-value=1.4e+02 Score=26.33 Aligned_cols=47 Identities=23% Similarity=0.255 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCce
Q 024433 29 PDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKI 78 (268)
Q Consensus 29 ~~~i~~~~e~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~i 78 (268)
.+...+.+.+.+++||++ +|.+.-. ....-...+.+.+++|+++|.+
T Consensus 68 ~~~~~~~~~~~l~~LgI~-~D~~~~t--t~~~~~~~v~~i~~~L~ekG~i 114 (319)
T cd00814 68 CDKYHEIFKDLFKWLNIS-FDYFIRT--TSPRHKEIVQEFFKKLYENGYI 114 (319)
T ss_pred HHHHHHHHHHHHHHcCCc-CCCCeeC--CCHHHHHHHHHHHHHHHHCCCE
Confidence 456677789999999996 5854321 1111234678899999999998
No 183
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=22.25 E-value=1.2e+02 Score=18.54 Aligned_cols=23 Identities=13% Similarity=0.120 Sum_probs=17.7
Q ss_pred CCChHHHHHHHhhcCCCCCHHHH
Q 024433 208 TTKIKNLDDNIDSLRIKLTKEDL 230 (268)
Q Consensus 208 ~~~~~~l~~nl~~~~~~Lt~~e~ 230 (268)
+.+++++...++..++.+|++|+
T Consensus 26 ~~~~~e~~~lA~~~Gy~ft~~el 48 (49)
T PF07862_consen 26 CQNPEEVVALAREAGYDFTEEEL 48 (49)
T ss_pred cCCHHHHHHHHHHcCCCCCHHHh
Confidence 44788888888888888887765
No 184
>CHL00040 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
Probab=22.21 E-value=6e+02 Score=24.13 Aligned_cols=110 Identities=13% Similarity=0.128 Sum_probs=63.2
Q ss_pred CCCCHHHHHHHHHHHHhHcCCCcc--cEEEeccCCCCCC----HHHHHHHHHHHHH-cCcee--eeecCCCCHHHHHH--
Q 024433 25 VKGTPDYVRSCCEASLKRLDVDYI--DLYYQHRVDTSVP----IEETIGEMKKLVE-EGKIK--YIGLSEASPDTIRR-- 93 (268)
Q Consensus 25 ~~~~~~~i~~~~e~SL~~L~~d~i--Dl~~lH~p~~~~~----~~~~~~~l~~l~~-~G~ir--~iGvs~~~~~~l~~-- 93 (268)
..++++...+.+.+.. .=|+|.| |=. +-++.. .+ +..+++++++..+ .|+-+ ++-|+.-+.+++.+
T Consensus 178 ~GLsp~~~A~~~y~~~-~GGvD~IKDDE~-l~dq~~-~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiTa~~~~em~~ra 254 (475)
T CHL00040 178 LGLSAKNYGRAVYECL-RGGLDFTKDDEN-VNSQPF-MRWRDRFLFCAEAIYKAQAETGEIKGHYLNATAGTCEEMYKRA 254 (475)
T ss_pred cCCCHHHHHHHHHHHH-cCCCcccccCcc-CCCCCC-CCHHHHHHHHHHHHHHHHHhhCCcceeeeccCCCCHHHHHHHH
Confidence 4678888888877666 4455533 111 111111 12 3457778877665 56533 44555445566544
Q ss_pred --HhCCCCeeEecccccccccchhhhHHHHHHHhCCceeecccCCCc
Q 024433 94 --AHGVHPITAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGRG 138 (268)
Q Consensus 94 --~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~vi~~~pl~~G 138 (268)
+.+ ....++++.++..--.....+.+.|+..++.++++..+.+.
T Consensus 255 ~~a~e-~G~~~~mv~~~~~G~~al~~l~~~~~~~~l~IhaHrA~~ga 300 (475)
T CHL00040 255 VFARE-LGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAV 300 (475)
T ss_pred HHHHH-cCCceEEEeccccccchHHHHHHHhhhcCceEEeccccccc
Confidence 233 33455666666554433467777788889999998888743
No 185
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=21.91 E-value=1.7e+02 Score=26.54 Aligned_cols=29 Identities=14% Similarity=0.079 Sum_probs=21.2
Q ss_pred CCCHHHHHHHHHHHHhHcCCCcccEEEecc
Q 024433 26 KGTPDYVRSCCEASLKRLDVDYIDLYYQHR 55 (268)
Q Consensus 26 ~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~ 55 (268)
..+.+.+++.++..+ .|+.++|.+|.+.-
T Consensus 166 gqt~~~~~~~l~~~~-~l~~~~is~y~l~~ 194 (370)
T PRK06294 166 TQSLSDFIVDLHQAI-TLPITHISLYNLTI 194 (370)
T ss_pred CCCHHHHHHHHHHHH-ccCCCeEEEeeeEe
Confidence 446777888887665 58888888887763
No 186
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=21.86 E-value=4.4e+02 Score=21.36 Aligned_cols=69 Identities=22% Similarity=0.323 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHcCceeeeecCCCCHHHH-HHHhCCCCeeEeccccccccc--------chhhhHHHHHHHhCCceeecc
Q 024433 63 EETIGEMKKLVEEGKIKYIGLSEASPDTI-RRAHGVHPITAVQMEWSLWTR--------DIEEEIIPLCRELGIGIVPYS 133 (268)
Q Consensus 63 ~~~~~~l~~l~~~G~ir~iGvs~~~~~~l-~~~~~~~~~~~~q~~~n~~~~--------~~~~~~~~~~~~~gi~vi~~~ 133 (268)
....+.++.+++.|- .+.+.+++.... ...+...+++.+=+..++... ..-..++..|+..|+.+++-+
T Consensus 133 ~~~~~~i~~l~~~G~--~ialddfg~~~~~~~~l~~l~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~g 210 (241)
T smart00052 133 ESAVATLQRLRELGV--RIALDDFGTGYSSLSYLKRLPVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVAEG 210 (241)
T ss_pred HHHHHHHHHHHHCCC--EEEEeCCCCcHHHHHHHHhCCCCeEEECHHHHhhhccChhHHHHHHHHHHHHHHCCCeEEEec
Confidence 345588999999996 355555533221 122333446666555444321 112677889999999988743
No 187
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=21.84 E-value=4.2e+02 Score=24.29 Aligned_cols=96 Identities=14% Similarity=0.100 Sum_probs=61.1
Q ss_pred CCCcEEEEecccccCCC------CCCccCCCCHHHHHHHHHHHHhHcCCC-------------cc-cEEEeccCCCCCCH
Q 024433 3 PREKVQIATKFGVVGLR------DNGVIVKGTPDYVRSCCEASLKRLDVD-------------YI-DLYYQHRVDTSVPI 62 (268)
Q Consensus 3 ~R~~~~I~tK~~~~~~~------~~~~~~~~~~~~i~~~~e~SL~~L~~d-------------~i-Dl~~lH~p~~~~~~ 62 (268)
.|..++|||.+|..-.. ..+.....++..|..|+....+.|+.. .+ .++++--=.+..-+
T Consensus 105 ~r~TlCvSSQvGC~mgC~FCaTG~~G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~i~NIVfMGMGEPL~Ny 184 (371)
T PRK14461 105 DRATVCVSTQAGCGMGCVFCATGTLGLLRNLSSGEIVAQVIWASRELRAMGAAISKRHAGPVGRVTNLVFMGMGEPFANY 184 (371)
T ss_pred CCceEEEEccCCccCCCCcccCCCCCcccCCCHHHHHHHHHHHHHHhhhcccccccccccccCceeeEEEEccCCchhhH
Confidence 47789999999876543 125567899999999998877666321 11 23333322333346
Q ss_pred HHHHHHHHHHHHc-Cc---eeeeecCCCCH-HHHHHHhCCC
Q 024433 63 EETIGEMKKLVEE-GK---IKYIGLSEASP-DTIRRAHGVH 98 (268)
Q Consensus 63 ~~~~~~l~~l~~~-G~---ir~iGvs~~~~-~~l~~~~~~~ 98 (268)
+.++++++.+.+. |. -|.|-||+-.. ..+.++.+..
T Consensus 185 dnV~~ai~il~d~~g~~is~R~ITVST~Givp~I~~la~~~ 225 (371)
T PRK14461 185 DRWWQAVERLHDPQGFNLGARSMTVSTVGLVKGIRRLANER 225 (371)
T ss_pred HHHHHHHHHhcCccccCcCCCceEEEeecchhHHHHHHhcc
Confidence 7899999998764 32 35677777644 4566665543
No 188
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=21.68 E-value=3.4e+02 Score=25.52 Aligned_cols=90 Identities=17% Similarity=0.196 Sum_probs=56.2
Q ss_pred HHhHcCCCcccEEEeccCCC-CCCHHHHHHHHHHHHHcCceeeeecCCCCHHHHHHHhCC-------CC-eeEecccccc
Q 024433 39 SLKRLDVDYIDLYYQHRVDT-SVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGV-------HP-ITAVQMEWSL 109 (268)
Q Consensus 39 SL~~L~~d~iDl~~lH~p~~-~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~-------~~-~~~~q~~~n~ 109 (268)
.++.||+.|. ++-.|.. .....++ ...+=+.|-+..+|....+++++++.+.. .+ |-+|.+. +.
T Consensus 11 f~~~lgiryP---iiqgpMa~GiSs~eL---VaAVs~AGgLG~lgag~l~~e~l~~~I~~ir~~~~~~p~fGVNL~~-~~ 83 (444)
T TIGR02814 11 FREDYGVRYA---YVAGAMANGIASAEL---VIAMGRAGILGFFGAGGLPLEEVEQAIHRIQQALPGGPAYGVNLIH-SP 83 (444)
T ss_pred HHHHhCCCCc---EECccccCCCCCHHH---HHHHHhCCceeeeCCCCCCHHHHHHHHHHHHHhcCCCCceEEEecc-cC
Confidence 3456777664 3334433 1222333 33455789999999999999888765432 24 7777652 22
Q ss_pred cccchhhhHHHHHHHhCCceeecccC
Q 024433 110 WTRDIEEEIIPLCRELGIGIVPYSPL 135 (268)
Q Consensus 110 ~~~~~~~~~~~~~~~~gi~vi~~~pl 135 (268)
-++..+..+++.|-++++.++..+.+
T Consensus 84 ~~~~~e~~~v~l~l~~~V~~veasa~ 109 (444)
T TIGR02814 84 SDPALEWGLVDLLLRHGVRIVEASAF 109 (444)
T ss_pred CCcccHHHHHHHHHHcCCCEEEeccc
Confidence 23333467889999999998776543
No 189
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=21.63 E-value=2.1e+02 Score=23.52 Aligned_cols=46 Identities=17% Similarity=0.145 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCcee
Q 024433 29 PDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK 79 (268)
Q Consensus 29 ~~~i~~~~e~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir 79 (268)
.+...+.+.+.+++||+. +|.+. ... .....+.+.++.|.++|.+.
T Consensus 67 ~~~~~~~~~~~~~~L~i~-~d~~~---~es-~~~~~~~~~i~~L~~~g~~~ 112 (212)
T cd00671 67 VEESIKADLETYGRLDVR-FDVWF---GES-SYLGLMGKVVELLEELGLLY 112 (212)
T ss_pred HHHHHHHHHHHHHHhCCc-Cceec---chh-hhhhHHHHHHHHHHHCCCEE
Confidence 345667788899999998 58765 111 12556778888899999873
No 190
>PRK13753 dihydropteroate synthase; Provisional
Probab=21.43 E-value=5.6e+02 Score=22.43 Aligned_cols=102 Identities=16% Similarity=0.132 Sum_probs=68.7
Q ss_pred CCHHHHHHHHHHHHhHcCCCcccEEEec-cCCCC-C----CHHHHHHHHHHHHHcCceeeeecCCCCHHHHHHHhCCCCe
Q 024433 27 GTPDYVRSCCEASLKRLDVDYIDLYYQH-RVDTS-V----PIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVHPI 100 (268)
Q Consensus 27 ~~~~~i~~~~e~SL~~L~~d~iDl~~lH-~p~~~-~----~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~ 100 (268)
++.+.+.+..++.+ .-|.|-||+=--- +|... . .+..+...++.+++.+. -|.|-++.+..++++++.+-
T Consensus 22 ~~~d~a~~~a~~m~-~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~~~--~ISIDT~~~~va~~al~aGa- 97 (279)
T PRK13753 22 LDPAGAVTAAIEML-RVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQMH--RVSIDSFQPETQRYALKRGV- 97 (279)
T ss_pred CCHHHHHHHHHHHH-HCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhCCC--cEEEECCCHHHHHHHHHcCC-
Confidence 46677777776655 6677888876533 35433 1 24456678888887753 48999999999999987642
Q ss_pred eEecccccccccchhhhHHHHHHHhCCceeecccCC
Q 024433 101 TAVQMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLG 136 (268)
Q Consensus 101 ~~~q~~~n~~~~~~~~~~~~~~~~~gi~vi~~~pl~ 136 (268)
+.+ ...+-+. ...+.+.+.+.++.++.+...+
T Consensus 98 diI-NDVsg~~---d~~~~~vva~~~~~vVlmH~~~ 129 (279)
T PRK13753 98 GYL-NDIQGFP---DPALYPDIAEADCRLVVMHSAQ 129 (279)
T ss_pred CEE-EeCCCCC---chHHHHHHHHcCCCEEEEecCC
Confidence 322 2223222 3677888989999999887654
No 191
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=21.37 E-value=5.5e+02 Score=23.01 Aligned_cols=63 Identities=10% Similarity=0.171 Sum_probs=40.9
Q ss_pred eeeeecCCCCHHHHHHHhCC-CCeeEecccccccccchh-hhHHHHHHHhCCceeecccCCCccc
Q 024433 78 IKYIGLSEASPDTIRRAHGV-HPITAVQMEWSLWTRDIE-EEIIPLCRELGIGIVPYSPLGRGFF 140 (268)
Q Consensus 78 ir~iGvs~~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~-~~~~~~~~~~gi~vi~~~pl~~GlL 140 (268)
++..-+...+++.+++++.. ....++..+.|+.....+ ..+.+.|+++|+.++.=..++.+++
T Consensus 116 ~~v~~vd~~d~~~l~~~i~~~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~~~~~ 180 (366)
T PRK08247 116 VRFVYVNTASLKAIEQAITPNTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYTPVL 180 (366)
T ss_pred ceEEEECCCCHHHHHHhcccCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccccc
Confidence 33444444567777777643 344455567787644322 7899999999999988777655543
No 192
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=21.26 E-value=5.5e+02 Score=22.31 Aligned_cols=98 Identities=11% Similarity=0.170 Sum_probs=55.0
Q ss_pred CCCHHHHHHHHHHHHhHcCCCcccEEEeccCCC---------CCCHHHHHHHHHHHHHc-CceeeeecCCCCH-------
Q 024433 26 KGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDT---------SVPIEETIGEMKKLVEE-GKIKYIGLSEASP------- 88 (268)
Q Consensus 26 ~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~p~~---------~~~~~~~~~~l~~l~~~-G~ir~iGvs~~~~------- 88 (268)
+.+...+...+.+. ..+|++ +++.|--..+ ...+....+.++.+++. |.--.||+..+..
T Consensus 70 ~~~~~~l~~~L~~~-~~~Gi~--niLal~GD~p~~~~~~~~~~~~f~~a~~Li~~i~~~~~~~f~igva~~Pe~Hp~~~~ 146 (281)
T TIGR00677 70 NMPIEMIDDALERA-YSNGIQ--NILALRGDPPHIGDDWTEVEGGFQYAVDLVKYIRSKYGDYFCIGVAGYPEGHPEAES 146 (281)
T ss_pred CCCHHHHHHHHHHH-HHCCCC--EEEEECCCCCCCCCCCCCCCCCCcCHHHHHHHHHHhCCCceEEEEEECCCCCCCCCC
Confidence 45566666666554 788876 4555544221 11233355555555554 4434799987731
Q ss_pred -H-HHHHHhC---C-CCeeEecccccccccchhhhHHHHHHHhCCce
Q 024433 89 -D-TIRRAHG---V-HPITAVQMEWSLWTRDIEEEIIPLCRELGIGI 129 (268)
Q Consensus 89 -~-~l~~~~~---~-~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v 129 (268)
+ ++..+.+ . ..+-+-|+-|+. ..-..+++.|++.|+.+
T Consensus 147 ~~~d~~~L~~Ki~aGA~f~iTQ~~Fd~---~~~~~f~~~~~~~gi~~ 190 (281)
T TIGR00677 147 VELDLKYLKEKVDAGADFIITQLFYDV---DNFLKFVNDCRAIGIDC 190 (281)
T ss_pred HHHHHHHHHHHHHcCCCEeeccceecH---HHHHHHHHHHHHcCCCC
Confidence 1 2333322 2 346666776654 22368888899988764
No 193
>PRK11024 colicin uptake protein TolR; Provisional
Probab=21.25 E-value=2.2e+02 Score=21.77 Aligned_cols=53 Identities=21% Similarity=0.224 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCceeeeecC
Q 024433 27 GTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS 84 (268)
Q Consensus 27 ~~~~~i~~~~e~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGvs 84 (268)
.+.+.+...+++.+.. .-|...+=..|...+++.+.+.|+.+++.|. ..+++.
T Consensus 85 v~~~~L~~~l~~~~~~----~~~~~V~i~aD~~~~~~~vv~vmd~~k~aG~-~~v~l~ 137 (141)
T PRK11024 85 LPEEQVVAEAKSRFKA----NPKTVFLIGGAKDVPYDEIIKALNLLHSAGV-KSVGLM 137 (141)
T ss_pred cCHHHHHHHHHHHHhh----CCCceEEEEcCCCCCHHHHHHHHHHHHHcCC-CeEEEE
Confidence 4556666666555443 2243344455778889999999999999984 446654
No 194
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=21.25 E-value=4.1e+02 Score=22.02 Aligned_cols=88 Identities=17% Similarity=0.247 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCceeeeecCCC-CHHHHHHHhCCCCeeEeccc
Q 024433 28 TPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEA-SPDTIRRAHGVHPITAVQME 106 (268)
Q Consensus 28 ~~~~i~~~~e~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~-~~~~l~~~~~~~~~~~~q~~ 106 (268)
+++....-. +.|-.-|+..+.+=+ +. ....+.+++++++..=-.+|..+- +.++++.+++.+- +++
T Consensus 18 ~~e~a~~~~-~al~~~Gi~~iEit~-~t-------~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA-~Fi--- 84 (204)
T TIGR01182 18 DVDDALPLA-KALIEGGLRVLEVTL-RT-------PVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGA-QFI--- 84 (204)
T ss_pred CHHHHHHHH-HHHHHcCCCEEEEeC-CC-------ccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCC-CEE---
Confidence 455554444 667788887766654 11 234555555555433246888765 8888888887543 222
Q ss_pred ccccccchhhhHHHHHHHhCCceee
Q 024433 107 WSLWTRDIEEEIIPLCRELGIGIVP 131 (268)
Q Consensus 107 ~n~~~~~~~~~~~~~~~~~gi~vi~ 131 (268)
.++ ..+.+++++|+++||.++.
T Consensus 85 vsP---~~~~~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 85 VSP---GLTPELAKHAQDHGIPIIP 106 (204)
T ss_pred ECC---CCCHHHHHHHHHcCCcEEC
Confidence 222 2247999999999998776
No 195
>PRK10508 hypothetical protein; Provisional
Probab=20.92 E-value=2.3e+02 Score=25.36 Aligned_cols=43 Identities=14% Similarity=0.173 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHH
Q 024433 27 GTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVE 74 (268)
Q Consensus 27 ~~~~~i~~~~e~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~ 74 (268)
-+++.+.+.|++..+++|+|.+ + ++.+. .+.+..++.++.|.+
T Consensus 286 Gtpe~V~~kl~~l~~~~g~del-~--~~~~~--~~~e~~~~S~~lla~ 328 (333)
T PRK10508 286 GDKAKVRHGLQSILRETQADEI-M--VNGQI--FDHQARLHSFELAMD 328 (333)
T ss_pred eCHHHHHHHHHHHHHHHCcCEE-E--EECCC--CCHHHHHHHHHHHHH
Confidence 4799999999999999999887 3 33332 345555555554443
No 196
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=20.87 E-value=3.3e+02 Score=24.19 Aligned_cols=91 Identities=20% Similarity=0.172 Sum_probs=55.7
Q ss_pred CHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHH--HHHHHHHHHHHcCceeeeecC--CCCHHHHHHHhCCCCeeEe
Q 024433 28 TPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIE--ETIGEMKKLVEEGKIKYIGLS--EASPDTIRRAHGVHPITAV 103 (268)
Q Consensus 28 ~~~~i~~~~e~SL~~L~~d~iDl~~lH~p~~~~~~~--~~~~~l~~l~~~G~ir~iGvs--~~~~~~l~~~~~~~~~~~~ 103 (268)
-...+.+..+...++||.....+.+.-..... .+- .+-+.|++|.++| ++.+=|- +|-.++++.+.+
T Consensus 205 Y~~~~~~t~~~i~~~l~~~~~~~~fQS~~g~~-~WL~P~~~~~l~~l~~~G-~~~V~v~p~gFv~D~lETl~e------- 275 (316)
T PF00762_consen 205 YPAQCEETARLIAERLGLPEWRLAFQSRFGPG-EWLGPSTEDVLEELAKEG-VKRVVVVPPGFVSDCLETLYE------- 275 (316)
T ss_dssp HHHHHHHHHHHHHHHTTTSSEEEEEES-SSSS--BSSSBHHHHHHHHHHCT--SEEEEEETT-SSSSHHHHCC-------
T ss_pred hHHHHHHHHHHHHHHcCCCceEEEEECCCCCC-CCccccHHHHHHHHHhcC-CCeEEEECCccccccHhHHHH-------
Confidence 36789999999999999887666665444332 232 4788899999999 4444221 233333333322
Q ss_pred cccccccccchhhhHHHHHHHhCCceeecccCCC
Q 024433 104 QMEWSLWTRDIEEEIIPLCRELGIGIVPYSPLGR 137 (268)
Q Consensus 104 q~~~n~~~~~~~~~~~~~~~~~gi~vi~~~pl~~ 137 (268)
.+.+.-+.+.++|+.-..+.|...
T Consensus 276 ----------idie~re~~~~~G~~~~~~ip~lN 299 (316)
T PF00762_consen 276 ----------IDIEYRELAEEAGGEEFVRIPCLN 299 (316)
T ss_dssp ----------CCCHHHHHHHHHTCCEEEE---ST
T ss_pred ----------HHHHHHHHHHHcCCceEEEeCCCC
Confidence 124667888999997777777764
No 197
>PRK08609 hypothetical protein; Provisional
Probab=20.78 E-value=6.5e+02 Score=24.44 Aligned_cols=15 Identities=20% Similarity=0.477 Sum_probs=9.5
Q ss_pred hhHHHHHHHhCCcee
Q 024433 116 EEIIPLCRELGIGIV 130 (268)
Q Consensus 116 ~~~~~~~~~~gi~vi 130 (268)
..+++.|.++|+.+.
T Consensus 482 ~~i~~~a~~~G~~lE 496 (570)
T PRK08609 482 DQLIELAKETNTALE 496 (570)
T ss_pred HHHHHHHHHhCCEEE
Confidence 456666666776664
No 198
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.75 E-value=6.3e+02 Score=22.81 Aligned_cols=89 Identities=9% Similarity=0.048 Sum_probs=0.0
Q ss_pred EEeccCCC-----------CCCHHHHHHHHHHHHHcCceeee-------ecCCC--CHHHHHHHhCCCC--eeEeccccc
Q 024433 51 YYQHRVDT-----------SVPIEETIGEMKKLVEEGKIKYI-------GLSEA--SPDTIRRAHGVHP--ITAVQMEWS 108 (268)
Q Consensus 51 ~~lH~p~~-----------~~~~~~~~~~l~~l~~~G~ir~i-------Gvs~~--~~~~l~~~~~~~~--~~~~q~~~n 108 (268)
+-||.+++ ..+++++.+++.+...+-..+-+ |+... +...+.+++...+ ..++.++||
T Consensus 213 lSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~~~~~~g~~V~ieyvLIpGvNDs~e~a~~La~~l~~l~~~~~VnLIPyn 292 (348)
T PRK14467 213 VSLNASSQKLRERIMPISKTNTLEELMEVLKQYPLPPGRRIMLEYVLIKGVNDSPEDALRLAQLIGKNKKKFKVNLIPFN 292 (348)
T ss_pred EECCCCCHHHHHHhcCCccccCHHHHHHHHHHHHHhcCCeEEEEEEEECCccCCHHHHHHHHHHHhcCCCceEEEEecCC
Q ss_pred ccccchh--------hhHHHHHHHhCCceeecccCCCcc
Q 024433 109 LWTRDIE--------EEIIPLCRELGIGIVPYSPLGRGF 139 (268)
Q Consensus 109 ~~~~~~~--------~~~~~~~~~~gi~vi~~~pl~~Gl 139 (268)
+.....- ..+.+..+++|+.+..+...+..+
T Consensus 293 p~~~~~~~~ps~e~i~~f~~~L~~~gi~v~vR~~~G~di 331 (348)
T PRK14467 293 PDPELPYERPELERVYKFQKILWDNGISTFVRWSKGVDI 331 (348)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCcch
No 199
>PLN02880 tyrosine decarboxylase
Probab=20.53 E-value=3.9e+02 Score=25.34 Aligned_cols=51 Identities=8% Similarity=0.019 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhHcCCCcccEEEeccCC---CCCCHHHHHHHHHHHHHcCceeee
Q 024433 31 YVRSCCEASLKRLDVDYIDLYYQHRVD---TSVPIEETIGEMKKLVEEGKIKYI 81 (268)
Q Consensus 31 ~i~~~~e~SL~~L~~d~iDl~~lH~p~---~~~~~~~~~~~l~~l~~~G~ir~i 81 (268)
...-++++++.-||+..=.+..+.... ...+.+.+-+++++.+++|++-.+
T Consensus 189 ~aH~Sv~Kaa~~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~ 242 (490)
T PLN02880 189 QTHSALQKACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFF 242 (490)
T ss_pred CchHHHHHHHHHcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEE
Confidence 346677788888877654455555532 124556666777777778866554
No 200
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=20.52 E-value=4.8e+02 Score=21.35 Aligned_cols=53 Identities=21% Similarity=0.285 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCceeeeecCCCC
Q 024433 29 PDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEAS 87 (268)
Q Consensus 29 ~~~i~~~~e~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~ 87 (268)
-..+.+.+++.++.+|.+ +.++ .+...+.+...+.++.+.++| +..|=++..+
T Consensus 13 ~~~~~~g~~~~a~~~g~~-~~~~----~~~~~d~~~q~~~i~~~i~~~-~d~Iiv~~~~ 65 (257)
T PF13407_consen 13 WQQVIKGAKAAAKELGYE-VEIV----FDAQNDPEEQIEQIEQAISQG-VDGIIVSPVD 65 (257)
T ss_dssp HHHHHHHHHHHHHHHTCE-EEEE----EESTTTHHHHHHHHHHHHHTT-ESEEEEESSS
T ss_pred HHHHHHHHHHHHHHcCCE-EEEe----CCCCCCHHHHHHHHHHHHHhc-CCEEEecCCC
Confidence 466888999999999865 3333 334445677888899998887 7776665443
No 201
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=20.45 E-value=1.9e+02 Score=23.01 Aligned_cols=64 Identities=20% Similarity=0.188 Sum_probs=37.6
Q ss_pred HHHHHHHHHhHcCCCcc----cEEEeccCCCCCCHHHHHHHHHHHHHcCceeeeecCCCCHHHHHHHhCC
Q 024433 32 VRSCCEASLKRLDVDYI----DLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGV 97 (268)
Q Consensus 32 i~~~~e~SL~~L~~d~i----Dl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~ 97 (268)
.+..++..++++|++.- +.+.-.+ .......++.+.|+.|+++| ++-.-+||.+...+...++.
T Consensus 61 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~L~~~g-~~~~i~Sn~~~~~~~~~l~~ 128 (198)
T TIGR01428 61 TREALRYLLGRLGLEDDESAADRLAEAY-LRLPPHPDVPAGLRALKERG-YRLAILSNGSPAMLKSLVKH 128 (198)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHH-hcCCCCCCHHHHHHHHHHCC-CeEEEEeCCCHHHHHHHHHH
Confidence 35667777778877521 1111111 11224567788899999988 44555777776666555443
No 202
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=20.42 E-value=1.9e+02 Score=21.99 Aligned_cols=19 Identities=26% Similarity=0.366 Sum_probs=9.0
Q ss_pred HHHHHHHHHHcCceeeeec
Q 024433 65 TIGEMKKLVEEGKIKYIGL 83 (268)
Q Consensus 65 ~~~~l~~l~~~G~ir~iGv 83 (268)
.+..|.+..+.|++..|=|
T Consensus 56 ~l~~ll~~~~~g~vd~vvv 74 (140)
T cd03770 56 GFNRMIEDIEAGKIDIVIV 74 (140)
T ss_pred HHHHHHHHHHcCCCCEEEE
Confidence 3444444445555554443
No 203
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=20.39 E-value=4e+02 Score=22.70 Aligned_cols=101 Identities=19% Similarity=0.230 Sum_probs=57.5
Q ss_pred CHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCH---HHHHHHHHHHHHcCceeeeecCCC------CHHHHHHHhCCC
Q 024433 28 TPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPI---EETIGEMKKLVEEGKIKYIGLSEA------SPDTIRRAHGVH 98 (268)
Q Consensus 28 ~~~~i~~~~e~SL~~L~~d~iDl~~lH~p~~~~~~---~~~~~~l~~l~~~G~ir~iGvs~~------~~~~l~~~~~~~ 98 (268)
.+..+..+....- .-|+||+-+=+.-..+..... ..+.+++.+.-.+.++-..+.+.+ ++..+.+.....
T Consensus 65 ~p~~~~~aa~~~a-~~GvdyvKvGl~g~~~~~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~~a 143 (235)
T PF04476_consen 65 KPGTASLAALGAA-ATGVDYVKVGLFGCKDYDEAIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDLPEIAAEA 143 (235)
T ss_pred CchHHHHHHHHHH-hcCCCEEEEecCCCCCHHHHHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHHHHHHHHc
Confidence 4555555554444 459999888777554322211 122233333334456777888877 355666666556
Q ss_pred CeeEecccc------cccccc---hhhhHHHHHHHhCCce
Q 024433 99 PITAVQMEW------SLWTRD---IEEEIIPLCRELGIGI 129 (268)
Q Consensus 99 ~~~~~q~~~------n~~~~~---~~~~~~~~~~~~gi~v 129 (268)
.++.+|+.- ++++.- ...++++.|+.+|+.+
T Consensus 144 G~~gvMlDTa~Kdg~~L~d~~~~~~L~~Fv~~ar~~gL~~ 183 (235)
T PF04476_consen 144 GFDGVMLDTADKDGGSLFDHLSEEELAEFVAQARAHGLMC 183 (235)
T ss_pred CCCEEEEecccCCCCchhhcCCHHHHHHHHHHHHHccchh
Confidence 677777742 233221 1267888888888753
No 204
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=20.34 E-value=2.2e+02 Score=24.38 Aligned_cols=98 Identities=17% Similarity=0.102 Sum_probs=52.3
Q ss_pred HHHHHHHHhHcCCCcccEEEeccCCCCCCHHH-HHHHHHHHHHcCceeeeecCCC-------CHHHHHHHhCCCCeeEec
Q 024433 33 RSCCEASLKRLDVDYIDLYYQHRVDTSVPIEE-TIGEMKKLVEEGKIKYIGLSEA-------SPDTIRRAHGVHPITAVQ 104 (268)
Q Consensus 33 ~~~~e~SL~~L~~d~iDl~~lH~p~~~~~~~~-~~~~l~~l~~~G~ir~iGvs~~-------~~~~l~~~~~~~~~~~~q 104 (268)
...++..|+..| +|||++=+-|-.......+ +-+.++.+++-|---+.|=.-+ ..++..+.++...|+++.
T Consensus 24 ~~~~~dlLe~ag-~yID~~K~g~Gt~~l~~~~~l~eki~l~~~~gV~v~~GGtl~E~a~~q~~~~~yl~~~k~lGf~~IE 102 (244)
T PF02679_consen 24 LRYLEDLLESAG-DYIDFLKFGWGTSALYPEEILKEKIDLAHSHGVYVYPGGTLFEVAYQQGKFDEYLEECKELGFDAIE 102 (244)
T ss_dssp HHHHHHHHHHHG-GG-SEEEE-TTGGGGSTCHHHHHHHHHHHCTT-EEEE-HHHHHHHHHTT-HHHHHHHHHHCT-SEEE
T ss_pred HHHHHHHHHHhh-hhccEEEecCceeeecCHHHHHHHHHHHHHcCCeEeCCcHHHHHHHhcChHHHHHHHHHHcCCCEEE
Confidence 356777787888 8999999998655443333 4444555555555555553322 223344444456777777
Q ss_pred ccccccccchh--hhHHHHHHHhCCceee
Q 024433 105 MEWSLWTRDIE--EEIIPLCRELGIGIVP 131 (268)
Q Consensus 105 ~~~n~~~~~~~--~~~~~~~~~~gi~vi~ 131 (268)
+.=..+....+ ..++..+++.|..|++
T Consensus 103 iSdGti~l~~~~r~~~I~~~~~~Gf~v~~ 131 (244)
T PF02679_consen 103 ISDGTIDLPEEERLRLIRKAKEEGFKVLS 131 (244)
T ss_dssp E--SSS---HHHHHHHHHHHCCTTSEEEE
T ss_pred ecCCceeCCHHHHHHHHHHHHHCCCEEee
Confidence 65444433322 5677777777777665
No 205
>PLN02444 HMP-P synthase
Probab=20.23 E-value=7.1e+02 Score=24.32 Aligned_cols=89 Identities=10% Similarity=0.056 Sum_probs=53.9
Q ss_pred CCCCHHHHHHHHHHHHhHcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCceeeeecCCCCHHHHHHHhCCCCeeEec
Q 024433 25 VKGTPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHGVHPITAVQ 104 (268)
Q Consensus 25 ~~~~~~~i~~~~e~SL~~L~~d~iDl~~lH~p~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~q 104 (268)
.+++.+.+...+++-.+ +-+|.+-||+-- ..+.++.++ | |..|+-+-.-.-+.+.+....
T Consensus 295 ~~lt~d~~~d~ieeQae----qGVDfmTIH~Gv-------~~~~v~~~~--~--R~tgIVSRGGSi~a~Wml~~~----- 354 (642)
T PLN02444 295 ENLTWEVFRETLIEQAE----QGVDYFTIHAGV-------LLRYIPLTA--K--RMTGIVSRGGSIHAKWCLAYH----- 354 (642)
T ss_pred hhCCHHHHHHHHHHHHH----hCCCEEEEChhh-------HHHHHHHHh--C--cccCceeCCcHHHHHHHHHcC-----
Confidence 45667777777766664 336677888732 233333333 3 667887776666655433221
Q ss_pred ccccccccchhhhHHHHHHHhCCceeecccC
Q 024433 105 MEWSLWTRDIEEEIIPLCRELGIGIVPYSPL 135 (268)
Q Consensus 105 ~~~n~~~~~~~~~~~~~~~~~gi~vi~~~pl 135 (268)
.=|+|..+. .++++.|++++|.+---..|
T Consensus 355 -kENPlYe~F-D~ileI~k~YDVtlSLGDGL 383 (642)
T PLN02444 355 -KENFAYEHW-DDILDICNQYDIALSIGDGL 383 (642)
T ss_pred -CcCchHHHH-HHHHHHHHHhCeeeeccCCc
Confidence 235555553 78999999999987543333
No 206
>PRK05968 hypothetical protein; Provisional
Probab=20.19 E-value=6.2e+02 Score=22.95 Aligned_cols=53 Identities=8% Similarity=0.024 Sum_probs=36.9
Q ss_pred CHHHHHHHhCCCCeeEecccccccccchh-hhHHHHHHHhCCceeecccCCCcc
Q 024433 87 SPDTIRRAHGVHPITAVQMEWSLWTRDIE-EEIIPLCRELGIGIVPYSPLGRGF 139 (268)
Q Consensus 87 ~~~~l~~~~~~~~~~~~q~~~n~~~~~~~-~~~~~~~~~~gi~vi~~~pl~~Gl 139 (268)
+++.+++++......++..+.|+.....+ ..+.+.|+++|+.++.=..++.+.
T Consensus 137 d~~~l~~~i~~tklV~ie~pt~~~~~~~dl~~i~~la~~~gi~vivD~a~a~~~ 190 (389)
T PRK05968 137 DEEAVAKALPGAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNSWASPV 190 (389)
T ss_pred CHHHHHHhcccCCEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcchh
Confidence 56777777654556666666776654333 688999999999988777665553
Done!