Citrus Sinensis ID: 024435

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------27
Protein Sequence
MNQQQADHQIETKASSETHHMQQQQEPHSSDYAPYPKIDPNDVAPPPQNWSNVSTATGPAPINESAATTMPAESNPYVSPSPIEPSSSKMKGALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKVVIPLSQLKAVNPSTSKAKPAEKYIQVISVDNHEFWFMGFVHYDSAVKNLLGALGPRSL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccEEEHHcccccHHHHHHHHHcEEEEccccccEEEEEEEccEEEEEEccccEEEEcccEEEEEEEEEEEcccccccccccccccccccEEEEEEEcccEEEEEEEccHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccHHHHHHHHccccccHHHHHHHEHEEccccccEEEEEEEEccEEEEEccccEEEEccccEEEEEEEEEEEHHHHccccccccccccccEEEEEEEEccccEEEEEEEcHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mnqqqadhqietkassethhmqqqqephssdyapypkidpndvapppqnwsnvstatgpapinesaattmpaesnpyvspspiepssskmkgaLSNWGKKAAEATKRAEDLAGNMwqhlktgpsladAAVGRIAQRTKVLAEGGYEKIFrqsfdtvpeeQLLKTYACYlstsagpvVGVLYLSTAklafcsddplsykvgdetqwSYYKVViplsqlkavnpstskakpaekYIQVISVDNHEFWFMGFVHYDSAVKNLLgalgprsl
Flexible Loop (DISEMBL)
MNQQQADHQIETKASSETHHMQQQQEPHSSDYAPYPKIDPNDVAPPPQNWSNVSTATGPAPINESAATTMPAESNPYVSPSPIEPSSSKMKGALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKVVIPLSQLKavnpstskakpaEKYIQVISVDNHEFWFMGFVHYDSAVKNLLgalgprsl
Low Complexity Region (SEG)
MNQQQADHQIETKASSETHHMQQQQEPHSSDYAPYPKIDPNDVAPPPQNWSNVSTATGPAPINESAATTMPAESNPYVSPSPIEPSSSKMKGALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKVVIPLSQLKAVNPSTSKAKPAEKYIQVISVDNHEFWFMGFVHYDSAVKNLLGALGPRSL
Disordered region (IsUnstruct)
*****************************************************************************************************************NMWQHLKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKVVIPLSQLKAV**********EKYIQVISVDNHEFWFMGFVHYDSAVKNLLGA******
Disordered Region (DISOPRED)
**********************************************************************************************************RAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKVVIPLS******************IQVISVDNHEFWFMGFVHYDSAVKNLLGA******
Disordered Region (DISEMBL)
******************************DYAPYPKIDPNDVAPPPQNWSNVSTATGPAPINESAATTM************************************RAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKVVIPLSQLKAVNPSTSKAKPAEKYIQVISVDNHEFWFMGFVHYDSAVKNLLGALGPRSL
Disordered Region (DISPRO)
***************************************************************************PYVSPSPIEPSSSKMKGALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKVVIPLSQLKAVNPSTSKAKPAEKYIQVISVDNHEFWFMGFVHYDSAVKNLLGALGPR**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNQQQADHQIETKASSETHHMQQQQEPHSSDYAPYPKIDPNDVAPPPQNWSNVSTATGPAPINESAATTMPAESNPYVSPSPIEPSSSKMKGALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKVVIPLSQLKAVNPSTSKAKPAEKYIQVISVDNHEFWFMGFVHYDSAVKNLLGALGPRSL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	268	2.2.26 [Sep-21-2011]
Q9SE96	259	GEM-like protein 1 OS=Ara	yes	no	0.843	0.872	0.691	6e-86
Q8S8F8	299	GLABRA2 expression modula	no	no	0.705	0.632	0.698	4e-79
Q9M063	239	Putative GEM-like protein	no	no	0.723	0.811	0.551	3e-60
Q9LYV6	272	GEM-like protein 5 OS=Ara	no	no	0.809	0.797	0.414	9e-48
Q9M122	233	GEM-like protein 2 OS=Ara	no	no	0.705	0.811	0.418	3e-40
Q9FMW6	218	GEM-like protein 6 OS=Ara	no	no	0.652	0.802	0.384	3e-31
Q9FMW4	219	Putative GEM-like protein	no	no	0.652	0.799	0.390	4e-31
Q9FMW5	210	GEM-like protein 7 OS=Ara	no	no	0.578	0.738	0.401	3e-30
Q9FTA0	222	GEM-like protein 4 OS=Ara	no	no	0.645	0.779	0.393	3e-29

>sp|Q9SE96|GEML1_ARATH GEM-like protein 1 OS=Arabidopsis thaliana GN=FIP1 PE=1 SV=1

 Score =  317 bits (812), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 164/237 (69%), Positives = 192/237 (81%), Gaps = 11/237 (4%)

Query: 28  HSSDYAPYPKIDPNDVAPPPQNWSNVSTATGPAPINESAATTMPAESNPYVSPSPI-EPS 86
           HSSDYAPYPK+DP DV PP          TG      +AATTMPAESNPYVSPSP    +
Sbjct: 28  HSSDYAPYPKLDPTDVTPP----PPQPIPTG------AAATTMPAESNPYVSPSPAPRNT 77

Query: 87  SSKMKGALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAEGGYE 146
              +K  L  WGK AA+ATK+AEDLAGN WQHLKTGPS+ADAAV RIAQ TK+LAEGGYE
Sbjct: 78  MDSVKDTLGKWGKMAADATKKAEDLAGNFWQHLKTGPSVADAAVSRIAQGTKILAEGGYE 137

Query: 147 KIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDETQWS 206
           K+F+Q+FD +P+E+LLKTYACYLSTSAGPV+GV+YLST KLAF SD+PLSYK G++T WS
Sbjct: 138 KVFKQTFDCLPDEKLLKTYACYLSTSAGPVLGVMYLSTHKLAFSSDNPLSYKEGEQTLWS 197

Query: 207 YYKVVIPLSQLKAVNPSTSKAKPAEKYIQVISVDNHEFWFMGFVHYDSAVKNLLGAL 263
           YYKVV+P +QLKAVNPSTS+   ++KYIQVIS+DNHEFWFMGFV Y+SAVK+L  A+
Sbjct: 198 YYKVVLPANQLKAVNPSTSRVNTSDKYIQVISIDNHEFWFMGFVTYESAVKSLQEAV 254

Arabidopsis thaliana (taxid: 3702)

>sp|Q8S8F8|GEM_ARATH GLABRA2 expression modulator OS=Arabidopsis thaliana GN=GEM PE=1 SV=1

 Score =  294 bits (753), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 137/196 (69%), Positives = 160/196 (81%), Gaps = 7/196 (3%)

Query: 75  NPYVSPSPIEPSSSKMK-------GALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLAD 127
           NPY++ SP E S + +K       G L  WGK+ AEA K+ E LAGN WQHL+T PS AD
Sbjct: 96  NPYIARSPAETSDASLKDTMETVKGVLGRWGKRVAEAAKKTESLAGNTWQHLRTAPSFAD 155

Query: 128 AAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKL 187
           AA+GRIAQ TKV AEGGYEKIFRQ+F+T PEEQLL ++ACYLSTSAGPV+GVLY+S+AKL
Sbjct: 156 AAMGRIAQSTKVFAEGGYEKIFRQTFETDPEEQLLNSFACYLSTSAGPVMGVLYISSAKL 215

Query: 188 AFCSDDPLSYKVGDETQWSYYKVVIPLSQLKAVNPSTSKAKPAEKYIQVISVDNHEFWFM 247
           A+CSD+PLSYK GD+T+WSYYKVVIPL QLKAVNPS S   PAEKYIQVISVDNHEFWFM
Sbjct: 216 AYCSDNPLSYKNGDQTEWSYYKVVIPLHQLKAVNPSASIVNPAEKYIQVISVDNHEFWFM 275

Query: 248 GFVHYDSAVKNLLGAL 263
           GF++YD AV +L  +L
Sbjct: 276 GFLNYDGAVTSLQDSL 291

Involved in the spatial control of cell division, patterning and differentiation of Arabidopsis root epidermal cells. Could be part of a complex that negatively modulates GLABRA2 and CAPRICE expression via the maintenance of a repressor histone H3 epigenetics status of the GL2 and CPC promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M063|GEML3_ARATH Putative GEM-like protein 3 OS=Arabidopsis thaliana GN=At4g40100 PE=3 SV=2

 Score =  231 bits (590), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 123/223 (55%), Positives = 153/223 (68%), Gaps = 29/223 (13%)

Query: 49  NWSNVSTATGPAPINESAATTMPAESNPYVSPSPIEPSSSKMK-------GALSNWGKKA 101
           +W+    +  PAP  ++ +++  A SNPYV+ +P E S + +K       G L  WG++ 
Sbjct: 29  HWNPELVSESPAPDEKALSSSSAARSNPYVARAPTETSDASLKETMESVKGVLGRWGRRV 88

Query: 102 AEATKRAEDLAGNMWQH-LKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQ 160
            EA  +AE LAGN WQH L+       AA+GRIAQ TKVLAEGGYEKIFRQ+F+TVPEEQ
Sbjct: 89  GEAAMKAESLAGNTWQHPLR-------AAMGRIAQSTKVLAEGGYEKIFRQTFETVPEEQ 141

Query: 161 LLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKVVIPLSQLKAV 220
           L  ++ACYLSTSAGPV+GVLY+STAKLA+CSD  L              VVIPL QLK+V
Sbjct: 142 LQNSFACYLSTSAGPVMGVLYVSTAKLAYCSDTSL--------------VVIPLHQLKSV 187

Query: 221 NPSTSKAKPAEKYIQVISVDNHEFWFMGFVHYDSAVKNLLGAL 263
           NPS S   PAEKYIQVISVD+HEFWFMGF++Y+ AV +L   L
Sbjct: 188 NPSISTVNPAEKYIQVISVDDHEFWFMGFLNYEGAVTSLQDTL 230

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYV6|GEML5_ARATH GEM-like protein 5 OS=Arabidopsis thaliana GN=At5g13200 PE=1 SV=1

 Score =  190 bits (482), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 100/241 (41%), Positives = 146/241 (60%), Gaps = 24/241 (9%)

Query: 39  DPNDVAPPPQNWSNVSTATGPAPI----NESAATTMPAESN-----PYVSPSPIE-PSSS 88
           +P+  +P  + W         AP+    N+ AA  +  ++      PYV  SP+E P+++
Sbjct: 28  EPSSSSPDQKKWGTHVMGAPAAPVAHPDNQQAAAWVAGDNQQTQYQPYVIYSPVEHPTTN 87

Query: 89  K----MKGALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAEGG 144
                + G    W +KA       E +A N+W +LKTGPS+++ A G++    K + +GG
Sbjct: 88  NPLEPVIGMFHTWSRKA-------ETVARNLWHNLKTGPSMSETAWGKVNLTAKAITKGG 140

Query: 145 YEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKV--GDE 202
           +E +FRQ F T P E L KT+ACYLST+ GPV G +YLS A++AFCSD PL +    G E
Sbjct: 141 FESLFRQIFGTEPNETLKKTFACYLSTTTGPVAGTVYLSNARVAFCSDRPLYFTAPSGQE 200

Query: 203 TQWSYYKVVIPLSQLKAVNPSTSKAKPAEKYIQVISVDNHEFWFMGFVHYDSAVKNLLGA 262
           + WSYY+VV+PL+ +  VNP   K  P EKYIQ+ +VD H+FWFMGFV+Y+ A  +LL +
Sbjct: 201 S-WSYYRVVVPLANVATVNPVVVKETPPEKYIQLTTVDGHDFWFMGFVNYEKATHHLLTS 259

Query: 263 L 263
           +
Sbjct: 260 V 260

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M122|GEML2_ARATH GEM-like protein 2 OS=Arabidopsis thaliana GN=At4g01600 PE=2 SV=1

 Score =  165 bits (418), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 82/196 (41%), Positives = 125/196 (63%), Gaps = 7/196 (3%)

Query: 75  NPYV---SPSPIEPSSSKMK--GALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAA 129
           NPYV   SP+      SK K    L+  GKK  +AT++AE L G +  HLK  PS++DAA
Sbjct: 29  NPYVHITSPTSASDKRSKDKVLEVLNRCGKKVEDATRKAEALVGGLKDHLKFSPSISDAA 88

Query: 130 VGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAF 189
           + R++Q TK++ EGG E++F++ F  +  E+LL ++ CY+ST++GPV GV+Y+S  ++AF
Sbjct: 89  MARLSQGTKMIVEGGPERVFQREFGVLAVEKLLDSFVCYISTTSGPVTGVIYISNRRIAF 148

Query: 190 CSDDPLSY--KVGDETQWSYYKVVIPLSQLKAVNPSTSKAKPAEKYIQVISVDNHEFWFM 247
           CSD  +      G     +YYKVV+   ++ +++ ST+  KP+E+Y+ +++ D  EFWFM
Sbjct: 149 CSDYAIRLPSSAGGNGVAAYYKVVMEWEKISSISSSTNVLKPSERYVHMVTRDGFEFWFM 208

Query: 248 GFVHYDSAVKNLLGAL 263
           GFV Y  A   L  AL
Sbjct: 209 GFVSYIDAFNCLNKAL 224

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMW6|GEML6_ARATH GEM-like protein 6 OS=Arabidopsis thaliana GN=At5g23350 PE=2 SV=2

 Score =  135 bits (340), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 70/182 (38%), Positives = 106/182 (58%), Gaps = 7/182 (3%)

Query: 85  PSSSKMKGALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAEGG 144
           P+SSK+   L+  GK      K+ +          K GP L +    +++   K+L  GG
Sbjct: 36  PTSSKV-SYLTGKGKSMLRK-KKTDSFTNGARDQDKLGPKLTETVKRKLSLGAKILQMGG 93

Query: 145 YEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGD--- 201
            EKI+++ F    +E+L K Y CYLST+AGP+ G+L++S+ K+AFCS+   S KV     
Sbjct: 94  LEKIYKRLFKVCDQEKLFKAYQCYLSTTAGPIAGLLFISSKKIAFCSER--SIKVASPQG 151

Query: 202 ETQWSYYKVVIPLSQLKAVNPSTSKAKPAEKYIQVISVDNHEFWFMGFVHYDSAVKNLLG 261
                +YKV IPL ++  VN S +  KP++KY++++++DN +FWFMGFV Y  A   L  
Sbjct: 152 VLSRVHYKVSIPLCKINGVNQSQNTKKPSQKYLEIVTIDNFDFWFMGFVSYQKAFNCLEK 211

Query: 262 AL 263
           AL
Sbjct: 212 AL 213

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMW4|GEML8_ARATH Putative GEM-like protein 8 OS=Arabidopsis thaliana GN=At5g23370 PE=3 SV=1

 Score =  135 bits (339), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 71/182 (39%), Positives = 106/182 (58%), Gaps = 7/182 (3%)

Query: 85  PSSSKMKGALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAEGG 144
           P+SSK    L+  GK      K+ +     +    K GP L +    +++   ++L  GG
Sbjct: 36  PTSSKF-SFLTGKGKSMLRK-KKNDSFTNGVRDQDKLGPKLTETVKRKLSLGARILQMGG 93

Query: 145 YEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGD--- 201
            EKI+++ F    EE+L K Y CYLST+AGP+ G+L++S+ K+AFCS+   S KV     
Sbjct: 94  LEKIYKRLFKVSDEEKLFKAYQCYLSTTAGPIAGLLFISSKKIAFCSER--SIKVASPQG 151

Query: 202 ETQWSYYKVVIPLSQLKAVNPSTSKAKPAEKYIQVISVDNHEFWFMGFVHYDSAVKNLLG 261
           E    +YKV IPL ++  VN S +  KP++KY++V++VD  +FWFMGF+ Y  A   L  
Sbjct: 152 ELNRVHYKVSIPLCKINGVNQSQNTTKPSQKYLEVVTVDGFDFWFMGFLSYQKAFNCLEQ 211

Query: 262 AL 263
           AL
Sbjct: 212 AL 213

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMW5|GEML7_ARATH GEM-like protein 7 OS=Arabidopsis thaliana GN=At5g23360 PE=2 SV=1

 Score =  132 bits (332), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 65/162 (40%), Positives = 99/162 (61%), Gaps = 7/162 (4%)

Query: 106 KRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTY 165
           K+ +          K GP L +    +++   K+L  GG EKI+++ F    +E+L K Y
Sbjct: 47  KKTDSFTNGARDQDKLGPKLTETVKRKLSLGAKILQMGGLEKIYKRLFKVCDKEKLFKAY 106

Query: 166 ACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKV----GDETQWSYYKVVIPLSQLKAVN 221
            CYLST+ G + G+L++S+ K+AFCS+   S KV    GD T+  +YKV IPL ++  VN
Sbjct: 107 QCYLSTTEGSIAGLLFISSKKIAFCSER--SIKVTSPQGDLTRV-HYKVSIPLCKINGVN 163

Query: 222 PSTSKAKPAEKYIQVISVDNHEFWFMGFVHYDSAVKNLLGAL 263
            S +  KP+++Y++V++VDN++FWFMGFV Y  A   L  AL
Sbjct: 164 QSQNTKKPSQRYLEVVTVDNYDFWFMGFVSYQKAFNCLEKAL 205

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FTA0|GEML4_ARATH GEM-like protein 4 OS=Arabidopsis thaliana GN=At5g08350 PE=2 SV=1

 Score =  129 bits (323), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 72/183 (39%), Positives = 107/183 (58%), Gaps = 10/183 (5%)

Query: 85  PSSSKMKGALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAEGG 144
           P+SSK K   SN   K+    K+ +     +    K  P L +    +++   ++L  GG
Sbjct: 36  PASSK-KSEQSNV--KSILKRKKTDGFTNGVRDQSKIRPKLTETVKRKLSLGARILQVGG 92

Query: 145 YEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKV----G 200
            EKIF++ F     E+L K Y CYLST+AGP+ G+L++S+ K+AFCS+   S KV    G
Sbjct: 93  LEKIFKRLFRVSEGEKLFKMYQCYLSTTAGPIAGLLFISSKKMAFCSER--SIKVDSPQG 150

Query: 201 DETQWSYYKVVIPLSQLKAVNPSTSKAKPAEKYIQVISVDNHEFWFMGFVHYDSAVKNLL 260
           D  +  +YKV IPL ++  VN S +  KP++KY++V++VD  +FWFMGF+ Y  A   L 
Sbjct: 151 DIIRV-HYKVSIPLCKIDRVNQSQNTKKPSQKYLEVVTVDGFDFWFMGFLSYQKAFNCLE 209

Query: 261 GAL 263
            AL
Sbjct: 210 KAL 212

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	268
224084586	294	predicted protein [Populus trichocarpa]	0.981	0.894	0.688	1e-102
255545896	267	conserved hypothetical protein [Ricinus	0.970	0.973	0.731	1e-101
224063293	290	predicted protein [Populus trichocarpa]	0.966	0.893	0.708	1e-101
356515708	269	PREDICTED: GEM-like protein 1-like [Glyc	0.876	0.873	0.774	3e-99
255646007	269	unknown [Glycine max]	0.876	0.873	0.774	1e-98
449469813	302	PREDICTED: GEM-like protein 1-like [Cucu	0.925	0.821	0.667	6e-97
363808044	283	uncharacterized protein LOC100794961 [Gl	0.861	0.816	0.754	2e-94
153850916	284	GEM-like 1 [Vitis vinifera]	0.884	0.834	0.717	2e-94
225459150	284	PREDICTED: GEM-like 1 [Vitis vinifera]	0.884	0.834	0.713	1e-93
357465343	258	GLABRA2 expression modulator [Medicago t	0.865	0.899	0.767	2e-89

>gi|224084586|ref|XP_002307347.1| predicted protein [Populus trichocarpa] gi|222856796|gb|EEE94343.1| predicted protein [Populus trichocarpa]

 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 199/289 (68%), Positives = 230/289 (79%), Gaps = 26/289 (8%)

Query: 1   MNQQQADHQIETKA--------SSETHHMQQQQ--EPHSSDYAPYPKIDPNDVAPPPQNW 50
           MNQ+Q  H+ +TK          SE H   + +  +PH++DYAPYPK+DP DVAPP  NW
Sbjct: 1   MNQKQDPHEDQTKKPAPSSSDLESEKHVEVKDKISDPHTTDYAPYPKLDPQDVAPPLDNW 60

Query: 51  SNVSTAT-----------GPAPINESAATTMPAESNPYVSPSPIEPSSSK-----MKGAL 94
           +NVS  +           G  PI  +  TTMPA+SNPYVSP+P+ PSSSK     +K  L
Sbjct: 61  ANVSMGSTTLSNPAGATQGSPPIAGTTVTTMPADSNPYVSPAPVAPSSSKNKMEAVKDVL 120

Query: 95  SNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFD 154
             WGKKAAEATK+AEDLAGNMWQHLKTGPS ADAAVGRIAQ TKVLAEGGYEKIFRQ+F+
Sbjct: 121 GKWGKKAAEATKKAEDLAGNMWQHLKTGPSFADAAVGRIAQGTKVLAEGGYEKIFRQTFE 180

Query: 155 TVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKVVIPL 214
           TVPEEQL+KT+ACYLSTSAGPV+GVLYLSTAKLAFCSD+PLSYK+G++T+WSYYKVVIPL
Sbjct: 181 TVPEEQLVKTFACYLSTSAGPVMGVLYLSTAKLAFCSDNPLSYKIGEQTEWSYYKVVIPL 240

Query: 215 SQLKAVNPSTSKAKPAEKYIQVISVDNHEFWFMGFVHYDSAVKNLLGAL 263
            QLKAVNPSTSK K AEKYIQ+ISVDNHEFWFMGFV+YD+AVK+L  AL
Sbjct: 241 HQLKAVNPSTSKVKSAEKYIQIISVDNHEFWFMGFVYYDNAVKSLQEAL 289

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545896|ref|XP_002514008.1| conserved hypothetical protein [Ricinus communis] gi|223547094|gb|EEF48591.1| conserved hypothetical protein [Ricinus communis]

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 199/272 (73%), Positives = 223/272 (81%), Gaps = 12/272 (4%)

Query: 2   NQQQADHQIETKASSETHHMQQQQEPHSSDYAPYPKIDPNDVAPPPQNWSNVSTATGPAP 61
           NQQQ     +  A S  H  +Q   PH+ DYAPYPK+DP DV+PP +NW+    A     
Sbjct: 3   NQQQVIDDTKKPADSPEHDNKQHNHPHTLDYAPYPKLDPIDVSPPQENWAVPPPAE---- 58

Query: 62  INESAATTMPAESNPYVSPSPIEPSSSK-----MKGALSNWGKKAAEATKRAEDLAGNMW 116
              +AATTMPAESNPYVSP+P+ PSSSK     +K  L  WGKKAAEATK+AEDLAGNMW
Sbjct: 59  ---AAATTMPAESNPYVSPAPVAPSSSKNKMDAVKDVLGKWGKKAAEATKKAEDLAGNMW 115

Query: 117 QHLKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPV 176
           QHLKTGPS ADAAVGRIAQ+TKVLAEGGYEK+F+QSF+TVPEEQL KTYACYLSTSAGPV
Sbjct: 116 QHLKTGPSFADAAVGRIAQQTKVLAEGGYEKVFQQSFETVPEEQLQKTYACYLSTSAGPV 175

Query: 177 VGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKVVIPLSQLKAVNPSTSKAKPAEKYIQV 236
           +GVLYLSTAKLAFCSD+PLSYK G++TQ+SYYKVVIPL QLKAVNPSTSK KP EKYIQ+
Sbjct: 176 IGVLYLSTAKLAFCSDNPLSYKNGEQTQYSYYKVVIPLHQLKAVNPSTSKVKPGEKYIQI 235

Query: 237 ISVDNHEFWFMGFVHYDSAVKNLLGALGPRSL 268
           ISVDNHEFWFMGFVHYDSAVK+L GAL  RS+
Sbjct: 236 ISVDNHEFWFMGFVHYDSAVKSLQGALEHRSV 267

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224063293|ref|XP_002301081.1| predicted protein [Populus trichocarpa] gi|222842807|gb|EEE80354.1| predicted protein [Populus trichocarpa]

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 192/271 (70%), Positives = 224/271 (82%), Gaps = 12/271 (4%)

Query: 5   QADHQIETKASSETHHMQQQQEPHSSDYAPYPKIDPNDVAPPPQNWSNVSTAT------- 57
           Q+   +E +  +E     +    H+SDYAPYPK+DP DVAP P+NW+N+ST +       
Sbjct: 15  QSPSDLEPQKLAEVEDKYKNSNSHTSDYAPYPKLDPKDVAPSPENWANLSTGSTTQSKPP 74

Query: 58  GPAPINESAATTMPAESNPYVSPSPIEPSSSK-----MKGALSNWGKKAAEATKRAEDLA 112
           GP+PI  +AATTMPAESNPYVSP P+ PSSSK     +K  L  WGKKAAEATK+AEDLA
Sbjct: 75  GPSPIAGTAATTMPAESNPYVSPGPVAPSSSKNTVEAVKDVLGKWGKKAAEATKKAEDLA 134

Query: 113 GNMWQHLKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTS 172
           GNMWQHLKTGPS ADAAVGRIAQ TKVLAEGGYEKIF+Q+F+TVPEE+L+KT+ACYLSTS
Sbjct: 135 GNMWQHLKTGPSFADAAVGRIAQGTKVLAEGGYEKIFQQTFETVPEEKLVKTFACYLSTS 194

Query: 173 AGPVVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKVVIPLSQLKAVNPSTSKAKPAEK 232
           AGPV+GVLYLSTAKLAFCSD+PLSYKVG+++QWSYYKVVIPL QLKAVNPSTSK   AEK
Sbjct: 195 AGPVMGVLYLSTAKLAFCSDNPLSYKVGEQSQWSYYKVVIPLHQLKAVNPSTSKVNSAEK 254

Query: 233 YIQVISVDNHEFWFMGFVHYDSAVKNLLGAL 263
           YIQ+IS DNHEFWFMGFV+YD+AV++L  AL
Sbjct: 255 YIQIISADNHEFWFMGFVYYDNAVQSLQQAL 285

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515708|ref|XP_003526540.1| PREDICTED: GEM-like protein 1-like [Glycine max]

 Score =  367 bits (941), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 189/244 (77%), Positives = 209/244 (85%), Gaps = 9/244 (3%)

Query: 28  HSSDYAPYPKIDPNDVAPPPQNWSNVSTATGPAPINESAATTMPAESNPYVSPSPIEPSS 87
           HS DYAPYPK+DP DVAPP Q  +  S A    PI+E AATTMP +SNPYV+P+P+  SS
Sbjct: 30  HSGDYAPYPKLDPTDVAPPQQPLNTESRA----PISEDAATTMPKDSNPYVTPAPVTASS 85

Query: 88  SK-----MKGALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAE 142
           +K     +K  L  WGKKAAEATK+AEDLAGNMWQHLKTGPS ADAAVGRIAQ TKVLAE
Sbjct: 86  TKTTLDSVKDVLGKWGKKAAEATKKAEDLAGNMWQHLKTGPSFADAAVGRIAQGTKVLAE 145

Query: 143 GGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDE 202
           GGYEKIFRQ+F+TVPEEQLLKTYACYLSTSAGPV+GVLYLSTAKLAFCSD+PLSY+VGD+
Sbjct: 146 GGYEKIFRQTFETVPEEQLLKTYACYLSTSAGPVMGVLYLSTAKLAFCSDNPLSYQVGDQ 205

Query: 203 TQWSYYKVVIPLSQLKAVNPSTSKAKPAEKYIQVISVDNHEFWFMGFVHYDSAVKNLLGA 262
           TQWSYYKVVIPL QL+AVN STSK   +EKYIQ+ISVDNHEFWFMGFVHYDSAVKN+ GA
Sbjct: 206 TQWSYYKVVIPLHQLRAVNASTSKTNQSEKYIQIISVDNHEFWFMGFVHYDSAVKNIQGA 265

Query: 263 LGPR 266
           L P 
Sbjct: 266 LQPH 269

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255646007|gb|ACU23491.1| unknown [Glycine max]

 Score =  365 bits (937), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 189/244 (77%), Positives = 208/244 (85%), Gaps = 9/244 (3%)

Query: 28  HSSDYAPYPKIDPNDVAPPPQNWSNVSTATGPAPINESAATTMPAESNPYVSPSPIEPSS 87
           HS DYAPYPK+DP DVAPP Q  +  S A    PI+E AATTMP +SNPYV+P+P   SS
Sbjct: 30  HSGDYAPYPKLDPTDVAPPQQPLNTESRA----PISEDAATTMPKDSNPYVTPAPATASS 85

Query: 88  SK-----MKGALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAE 142
           +K     +K  L  WGKKAAEATK+AEDLAGNMWQHLKTGPS ADAAVGRIAQ TKVLAE
Sbjct: 86  TKTTLDSVKDVLGKWGKKAAEATKKAEDLAGNMWQHLKTGPSFADAAVGRIAQGTKVLAE 145

Query: 143 GGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDE 202
           GGYEKIFRQ+F+TVPEEQLLKTYACYLSTSAGPV+GVLYLSTAKLAFCSD+PLSY+VGD+
Sbjct: 146 GGYEKIFRQTFETVPEEQLLKTYACYLSTSAGPVMGVLYLSTAKLAFCSDNPLSYQVGDQ 205

Query: 203 TQWSYYKVVIPLSQLKAVNPSTSKAKPAEKYIQVISVDNHEFWFMGFVHYDSAVKNLLGA 262
           TQWSYYKVVIPL QL+AVN STSK   +EKYIQ+ISVDNHEFWFMGFVHYDSAVKN+ GA
Sbjct: 206 TQWSYYKVVIPLHQLRAVNASTSKTNQSEKYIQIISVDNHEFWFMGFVHYDSAVKNIQGA 265

Query: 263 LGPR 266
           L P 
Sbjct: 266 LQPH 269

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469813|ref|XP_004152613.1| PREDICTED: GEM-like protein 1-like [Cucumis sativus] gi|449527647|ref|XP_004170821.1| PREDICTED: GEM-like protein 1-like [Cucumis sativus]

 Score =  359 bits (922), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 183/274 (66%), Positives = 207/274 (75%), Gaps = 26/274 (9%)

Query: 20  HMQQQQEPHSSDYAPYPKIDPNDVAPPP--QNWSNVSTAT-----------------GPA 60
           H        S DY+PYPK+DP+DVAPPP  +NW+ V   +                   A
Sbjct: 25  HTDPDTNHRSGDYSPYPKLDPSDVAPPPLPENWTTVPMGSQPQNPPPPPPQTQPNSEARA 84

Query: 61  PINESAATTMPAESNPYVS--PSPIEPSSSK-----MKGALSNWGKKAAEATKRAEDLAG 113
           PI+E  ATT+P E+NPYVS  P+P  PSSSK     +K  L  WGK+A EATK+AEDLAG
Sbjct: 85  PISEGNATTLPTEANPYVSAAPAPGNPSSSKHTMDSVKVMLGRWGKRAVEATKKAEDLAG 144

Query: 114 NMWQHLKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSA 173
           NMWQHLKTGPS ADAAVGRIAQ TKVLAEGGYEKIFRQ+F+  PEE+L K YACYLSTSA
Sbjct: 145 NMWQHLKTGPSFADAAVGRIAQGTKVLAEGGYEKIFRQTFENTPEEKLQKAYACYLSTSA 204

Query: 174 GPVVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKVVIPLSQLKAVNPSTSKAKPAEKY 233
           GPV+G LY+STAKLAFCSD+PLSYKVG+ETQWS YKVVIPL  LK+VNPSTSKAKPAEK+
Sbjct: 205 GPVMGTLYISTAKLAFCSDNPLSYKVGEETQWSLYKVVIPLHHLKSVNPSTSKAKPAEKF 264

Query: 234 IQVISVDNHEFWFMGFVHYDSAVKNLLGALGPRS 267
           IQVIS+DNHEFWFMGFV YDSAVK L  AL P +
Sbjct: 265 IQVISIDNHEFWFMGFVSYDSAVKTLQEALHPNN 298

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363808044|ref|NP_001242211.1| uncharacterized protein LOC100794961 [Glycine max] gi|255635924|gb|ACU18309.1| unknown [Glycine max]

 Score =  351 bits (900), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 184/244 (75%), Positives = 206/244 (84%), Gaps = 13/244 (5%)

Query: 29  SSDYAPYPKIDPNDVAPPPQNWSNVSTATGPAPINESAATTMPAESNPYVSPSPIEPSSS 88
           ++DYAPYPK+DP DVAPP    S        API+E AATTMP +SNPYV+P+P+  SS+
Sbjct: 47  TADYAPYPKLDPTDVAPPLNTESR-------APISEDAATTMPKDSNPYVTPAPVPASST 99

Query: 89  K-----MKGALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAEG 143
           K     +K  L  WGKKAAEATK+AEDLAGNMWQHLKTGPS ADAAVGRIAQ TKVLAEG
Sbjct: 100 KTTLDSVKDVLGKWGKKAAEATKKAEDLAGNMWQHLKTGPSFADAAVGRIAQGTKVLAEG 159

Query: 144 GYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKV-GDE 202
           GYEKIFRQ+F+TVP EQLLKTYACYLSTSAGPV+GVLYLSTAKLAFCSD+PLSY+V GD+
Sbjct: 160 GYEKIFRQTFETVPGEQLLKTYACYLSTSAGPVMGVLYLSTAKLAFCSDNPLSYQVGGDQ 219

Query: 203 TQWSYYKVVIPLSQLKAVNPSTSKAKPAEKYIQVISVDNHEFWFMGFVHYDSAVKNLLGA 262
           TQWSYYKVVIPL QL+AVN STS+   +EKYIQ+ISVDNHEFWFMGFVHYDSAVKN+ GA
Sbjct: 220 TQWSYYKVVIPLHQLRAVNASTSRTNQSEKYIQIISVDNHEFWFMGFVHYDSAVKNIQGA 279

Query: 263 LGPR 266
           L P 
Sbjct: 280 LQPH 283

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|153850916|gb|ABS52645.1| GEM-like 1 [Vitis vinifera]

 Score =  350 bits (899), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 188/262 (71%), Positives = 210/262 (80%), Gaps = 25/262 (9%)

Query: 27  PHSSDYAPYPKIDPNDVAPPPQNWSNV--------------------STATGPAPINESA 66
           P S+DYAPYPK+DPNDVAPP ++W+ V                    S + GPAPI  ++
Sbjct: 19  PPSADYAPYPKLDPNDVAPPKEDWTTVTISSQTPHPVSQNSGSPISESASEGPAPIARNS 78

Query: 67  ATTMPAESNPYVSPSPIEPSSSK-----MKGALSNWGKKAAEATKRAEDLAGNMWQHLKT 121
           ATTMP ESNPY+S SP   SS K     +K  L  WGKKAAEATK+AEDLAGNMWQHLKT
Sbjct: 79  ATTMPVESNPYISSSPAPASSMKNKMDSVKDVLGKWGKKAAEATKKAEDLAGNMWQHLKT 138

Query: 122 GPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLY 181
           GPS ADAAVGRIAQ TKVLAEGGYEKIF+Q+F+TVPEEQL K+YACYLSTSAGPV+G+LY
Sbjct: 139 GPSFADAAVGRIAQGTKVLAEGGYEKIFQQTFETVPEEQLQKSYACYLSTSAGPVMGILY 198

Query: 182 LSTAKLAFCSDDPLSYKVGDETQWSYYKVVIPLSQLKAVNPSTSKAKPAEKYIQVISVDN 241
           LST KLAFCSD PLSYKVG++T+WSYYKVVIPL QLKAVN STSK  PAEKY+Q+ISVDN
Sbjct: 199 LSTEKLAFCSDSPLSYKVGEQTEWSYYKVVIPLHQLKAVNTSTSKVNPAEKYVQIISVDN 258

Query: 242 HEFWFMGFVHYDSAVKNLLGAL 263
           HEFWFMGFVHYDSAVKNL GAL
Sbjct: 259 HEFWFMGFVHYDSAVKNLQGAL 280

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459150|ref|XP_002285708.1| PREDICTED: GEM-like 1 [Vitis vinifera]

 Score =  348 bits (894), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 187/262 (71%), Positives = 209/262 (79%), Gaps = 25/262 (9%)

Query: 27  PHSSDYAPYPKIDPNDVAPPPQNWSNV--------------------STATGPAPINESA 66
           P S+DYAPYPK+DPNDVAPP ++W+ V                    S + GPAPI  ++
Sbjct: 19  PPSADYAPYPKLDPNDVAPPKEDWTTVTISSQTPHPVSQNSGSPISESASEGPAPIARNS 78

Query: 67  ATTMPAESNPYVSPSPIEPSSSK-----MKGALSNWGKKAAEATKRAEDLAGNMWQHLKT 121
           ATTMP ESNPY+S SP   SS K     +K  L  WGKKAAEATK+AEDLAGNMWQHLK 
Sbjct: 79  ATTMPVESNPYISSSPAPASSMKNKMDSVKDVLGKWGKKAAEATKKAEDLAGNMWQHLKM 138

Query: 122 GPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLY 181
           GPS ADAAVGRIAQ TKVLAEGGYEKIF+Q+F+TVPEEQL K+YACYLSTSAGPV+G+LY
Sbjct: 139 GPSFADAAVGRIAQGTKVLAEGGYEKIFQQTFETVPEEQLQKSYACYLSTSAGPVMGILY 198

Query: 182 LSTAKLAFCSDDPLSYKVGDETQWSYYKVVIPLSQLKAVNPSTSKAKPAEKYIQVISVDN 241
           LST KLAFCSD PLSYKVG++T+WSYYKVVIPL QLKAVN STSK  PAEKY+Q+ISVDN
Sbjct: 199 LSTEKLAFCSDSPLSYKVGEQTEWSYYKVVIPLHQLKAVNTSTSKVNPAEKYVQIISVDN 258

Query: 242 HEFWFMGFVHYDSAVKNLLGAL 263
           HEFWFMGFVHYDSAVKNL GAL
Sbjct: 259 HEFWFMGFVHYDSAVKNLQGAL 280

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357465343|ref|XP_003602953.1| GLABRA2 expression modulator [Medicago truncatula] gi|355492001|gb|AES73204.1| GLABRA2 expression modulator [Medicago truncatula]

 Score =  334 bits (857), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 188/245 (76%), Positives = 209/245 (85%), Gaps = 13/245 (5%)

Query: 28  HSSDYAPYPKIDPNDVAPPPQNWSNVSTATGPAPINESAATTMPAESNPYVSPSPI-EPS 86
           H+ DYAPYPK+DPNDVAPPP   +  S AT        AATTMPAESNPYVSP+P+  P+
Sbjct: 21  HTPDYAPYPKLDPNDVAPPPPPVATESRAT-------DAATTMPAESNPYVSPAPVPAPT 73

Query: 87  SSK-----MKGALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLA 141
           S+K     +K  L  WGKKAAEATK+AEDLAGNMWQHLKTGPS ADAAVGRIAQ TKVLA
Sbjct: 74  SAKNTLDSVKDVLGKWGKKAAEATKKAEDLAGNMWQHLKTGPSFADAAVGRIAQGTKVLA 133

Query: 142 EGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGD 201
           EGGYEKIFRQ+F+TVPEEQLLKTYACYLSTSAGPV+GVLYLSTAKLAFCSD+PLSY+ GD
Sbjct: 134 EGGYEKIFRQTFETVPEEQLLKTYACYLSTSAGPVMGVLYLSTAKLAFCSDNPLSYQTGD 193

Query: 202 ETQWSYYKVVIPLSQLKAVNPSTSKAKPAEKYIQVISVDNHEFWFMGFVHYDSAVKNLLG 261
           +TQWSYYKVVIPL QL+AVNPSTSKA P EK+IQ+ISVDNHEFWFMGFV+YDSAVK++  
Sbjct: 194 QTQWSYYKVVIPLHQLRAVNPSTSKANPTEKFIQIISVDNHEFWFMGFVYYDSAVKHIQE 253

Query: 262 ALGPR 266
           AL  R
Sbjct: 254 ALQSR 258

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	268
TAIR|locus:2032185	259	FIP1 "AT1G28200" [Arabidopsis	0.929	0.961	0.642	1.3e-86
TAIR|locus:505006267	299	GEM "AT2G22475" [Arabidopsis t	0.798	0.715	0.648	5.1e-74
TAIR|locus:2183901	272	AT5G13200 "AT5G13200" [Arabido	0.847	0.834	0.407	8.8e-47
TAIR|locus:2133387	233	AT4G01600 "AT4G01600" [Arabido	0.705	0.811	0.423	3.4e-38
TAIR|locus:2166806	219	AT5G23370 "AT5G23370" [Arabido	0.716	0.876	0.380	3e-30
TAIR|locus:2166791	210	AT5G23360 "AT5G23360" [Arabido	0.690	0.880	0.358	4.4e-29
TAIR|locus:2150823	222	AT5G08350 "AT5G08350" [Arabido	0.645	0.779	0.393	3.1e-28

TAIR|locus:2032185 FIP1 "AT1G28200" [Arabidopsis thaliana (taxid:3702)]

 Score = 866 (309.9 bits), Expect = 1.3e-86, P = 1.3e-86
 Identities = 169/263 (64%), Positives = 205/263 (77%)

Query:     3 QQQADH-QIETKASSETHHMQQQQEPHSSDYAPYPKIDPNDVAPPPQNWSNVSTATGPAP 61
             Q+  DH +I +  ++ +     +   HSSDYAPYPK+DP DV PPP           P P
Sbjct:     4 QENHDHGRISSTPAAASE--PSKAAAHSSDYAPYPKLDPTDVTPPPPQ---------PIP 52

Query:    62 INESAATTMPAESNPYVSPSPIEPSS-SKMKGALSNWGKKAAEATKRAEDLAGNMWQHLK 120
                +AATTMPAESNPYVSPSP   ++   +K  L  WGK AA+ATK+AEDLAGN WQHLK
Sbjct:    53 TG-AAATTMPAESNPYVSPSPAPRNTMDSVKDTLGKWGKMAADATKKAEDLAGNFWQHLK 111

Query:   121 TGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVL 180
             TGPS+ADAAV RIAQ TK+LAEGGYEK+F+Q+FD +P+E+LLKTYACYLSTSAGPV+GV+
Sbjct:   112 TGPSVADAAVSRIAQGTKILAEGGYEKVFKQTFDCLPDEKLLKTYACYLSTSAGPVLGVM 171

Query:   181 YLSTAKLAFCSDDPLSYKVGDETQWSYYKVVIPLSQLKAVNPSTSKAKPAEKYIQVISVD 240
             YLST KLAF SD+PLSYK G++T WSYYKVV+P +QLKAVNPSTS+   ++KYIQVIS+D
Sbjct:   172 YLSTHKLAFSSDNPLSYKEGEQTLWSYYKVVLPANQLKAVNPSTSRVNTSDKYIQVISID 231

Query:   241 NHEFWFMGFVHYDSAVKNLLGAL 263
             NHEFWFMGFV Y+SAVK+L  A+
Sbjct:   232 NHEFWFMGFVTYESAVKSLQEAV 254

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0016197 "endosomal transport" evidence=RCA

TAIR|locus:505006267 GEM "AT2G22475" [Arabidopsis thaliana (taxid:3702)]

 Score = 747 (268.0 bits), Expect = 5.1e-74, P = 5.1e-74
 Identities = 144/222 (64%), Positives = 173/222 (77%)

Query:    49 NWSNVSTATGPAPINESAATTMPAESNPYVSPSPIEPSSSKMK-------GALSNWGKKA 101
             +WS    +    P ++ AA++  A SNPY++ SP E S + +K       G L  WGK+ 
Sbjct:    71 HWSPELVSGSQEP-DQKAASSSSAGSNPYIARSPAETSDASLKDTMETVKGVLGRWGKRV 129

Query:   102 AEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQL 161
             AEA K+ E LAGN WQHL+T PS ADAA+GRIAQ TKV AEGGYEKIFRQ+F+T PEEQL
Sbjct:   130 AEAAKKTESLAGNTWQHLRTAPSFADAAMGRIAQSTKVFAEGGYEKIFRQTFETDPEEQL 189

Query:   162 LKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKVVIPLSQLKAVN 221
             L ++ACYLSTSAGPV+GVLY+S+AKLA+CSD+PLSYK GD+T+WSYYKVVIPL QLKAVN
Sbjct:   190 LNSFACYLSTSAGPVMGVLYISSAKLAYCSDNPLSYKNGDQTEWSYYKVVIPLHQLKAVN 249

Query:   222 PSTSKAKPAEKYIQVISVDNHEFWFMGFVHYDSAVKNLLGAL 263
             PS S   PAEKYIQVISVDNHEFWFMGF++YD AV +L  +L
Sbjct:   250 PSASIVNPAEKYIQVISVDNHEFWFMGFLNYDGAVTSLQDSL 291

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0010026 "trichome differentiation" evidence=IMP

GO:0010482 "regulation of epidermal cell division" evidence=IMP

GO:0048765 "root hair cell differentiation" evidence=IMP

GO:0051567 "histone H3-K9 methylation" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0042732 "D-xylose metabolic process" evidence=RCA

TAIR|locus:2183901 AT5G13200 "AT5G13200" [Arabidopsis thaliana (taxid:3702)]

 Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
 Identities = 103/253 (40%), Positives = 151/253 (59%)

Query:    24 QQEPHSSDYAPYPKIDPNDVAPPPQNWSNVSTATGPAPI----NESAATTMPAESN---- 75
             Q++P + +    P  +P+  +P  + W         AP+    N+ AA  +  ++     
Sbjct:    15 QEQPKTLETEHQP--EPSSSSPDQKKWGTHVMGAPAAPVAHPDNQQAAAWVAGDNQQTQY 72

Query:    76 -PYVSPSPIE-PSSSK----MKGALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAA 129
              PYV  SP+E P+++     + G    W +KA       E +A N+W +LKTGPS+++ A
Sbjct:    73 QPYVIYSPVEHPTTNNPLEPVIGMFHTWSRKA-------ETVARNLWHNLKTGPSMSETA 125

Query:   130 VGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAF 189
              G++    K + +GG+E +FRQ F T P E L KT+ACYLST+ GPV G +YLS A++AF
Sbjct:   126 WGKVNLTAKAITKGGFESLFRQIFGTEPNETLKKTFACYLSTTTGPVAGTVYLSNARVAF 185

Query:   190 CSDDPLSYKV--GDETQWSYYKVVIPLSQLKAVNPSTSKAKPAEKYIQVISVDNHEFWFM 247
             CSD PL +    G E+ WSYY+VV+PL+ +  VNP   K  P EKYIQ+ +VD H+FWFM
Sbjct:   186 CSDRPLYFTAPSGQES-WSYYRVVVPLANVATVNPVVVKETPPEKYIQLTTVDGHDFWFM 244

Query:   248 GFVHYDSAVKNLL 260
             GFV+Y+ A  +LL
Sbjct:   245 GFVNYEKATHHLL 257

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010286 "heat acclimation" evidence=RCA

TAIR|locus:2133387 AT4G01600 "AT4G01600" [Arabidopsis thaliana (taxid:3702)]

 Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
 Identities = 83/196 (42%), Positives = 125/196 (63%)

Query:    75 NPYV---SPSPIEPSSSKMK--GALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAA 129
             NPYV   SP+      SK K    L+  GKK  +AT++AE L G +  HLK  PS++DAA
Sbjct:    29 NPYVHITSPTSASDKRSKDKVLEVLNRCGKKVEDATRKAEALVGGLKDHLKFSPSISDAA 88

Query:   130 VGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAF 189
             + R++Q TK++ EGG E++F++ F  +  E+LL ++ CY+ST++GPV GV+Y+S  ++AF
Sbjct:    89 MARLSQGTKMIVEGGPERVFQREFGVLAVEKLLDSFVCYISTTSGPVTGVIYISNRRIAF 148

Query:   190 CSDDP--LSYKVGDETQWSYYKVVIPLSQLKAVNPSTSKAKPAEKYIQVISVDNHEFWFM 247
             CSD    L    G     +YYKVV+   ++ +++ ST+  KP+E+Y+ +++ D  EFWFM
Sbjct:   149 CSDYAIRLPSSAGGNGVAAYYKVVMEWEKISSISSSTNVLKPSERYVHMVTRDGFEFWFM 208

Query:   248 GFVHYDSAVKNLLGAL 263
             GFV Y  A   L  AL
Sbjct:   209 GFVSYIDAFNCLNKAL 224

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2166806 AT5G23370 "AT5G23370" [Arabidopsis thaliana (taxid:3702)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 78/205 (38%), Positives = 114/205 (55%)

Query:    66 AATTMPAESNPYVSPSPIE----PSSSKMKGALSNWGKKAAEATKRAEDLAGNMWQHLKT 121
             A  T PA   P   P+ I     P+SSK    L+  GK      K+ +     +    K 
Sbjct:    15 AVKTSPAGYLP--DPASINKLQIPTSSKFS-FLTGKGKSMLRK-KKNDSFTNGVRDQDKL 70

Query:   122 GPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLY 181
             GP L +    +++   ++L  GG EKI+++ F    EE+L K Y CYLST+AGP+ G+L+
Sbjct:    71 GPKLTETVKRKLSLGARILQMGGLEKIYKRLFKVSDEEKLFKAYQCYLSTTAGPIAGLLF 130

Query:   182 LSTAKLAFCSDDPLSYKVGD---ETQWSYYKVVIPLSQLKAVNPSTSKAKPAEKYIQVIS 238
             +S+ K+AFCS+   S KV     E    +YKV IPL ++  VN S +  KP++KY++V++
Sbjct:   131 ISSKKIAFCSER--SIKVASPQGELNRVHYKVSIPLCKINGVNQSQNTTKPSQKYLEVVT 188

Query:   239 VDNHEFWFMGFVHYDSAVKNLLGAL 263
             VD  +FWFMGF+ Y  A   L  AL
Sbjct:   189 VDGFDFWFMGFLSYQKAFNCLEQAL 213

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2166791 AT5G23360 "AT5G23360" [Arabidopsis thaliana (taxid:3702)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 70/195 (35%), Positives = 115/195 (58%)

Query:    76 PYVSPSPI----EPSS-SKMKGALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAV 130
             P V+ +P+    +P+S +K++   S+  K +    K+ +          K GP L +   
Sbjct:    14 PAVNTAPVGYLPDPASINKLQIPTSS--KVSMLQKKKTDSFTNGARDQDKLGPKLTETVK 71

Query:   131 GRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFC 190
              +++   K+L  GG EKI+++ F    +E+L K Y CYLST+ G + G+L++S+ K+AFC
Sbjct:    72 RKLSLGAKILQMGGLEKIYKRLFKVCDKEKLFKAYQCYLSTTEGSIAGLLFISSKKIAFC 131

Query:   191 SDDPLSYKV--GDETQWSYYKVVIPLSQLKAVNPSTSKAKPAEKYIQVISVDNHEFWFMG 248
             S+  +      GD T+  +YKV IPL ++  VN S +  KP+++Y++V++VDN++FWFMG
Sbjct:   132 SERSIKVTSPQGDLTR-VHYKVSIPLCKINGVNQSQNTKKPSQRYLEVVTVDNYDFWFMG 190

Query:   249 FVHYDSAVKNLLGAL 263
             FV Y  A   L  AL
Sbjct:   191 FVSYQKAFNCLEKAL 205

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2150823 AT5G08350 "AT5G08350" [Arabidopsis thaliana (taxid:3702)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 72/183 (39%), Positives = 106/183 (57%)

Query:    85 PSSSKMKGALSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAEGG 144
             P+SSK K   SN   K+    K+ +     +    K  P L +    +++   ++L  GG
Sbjct:    36 PASSK-KSEQSN--VKSILKRKKTDGFTNGVRDQSKIRPKLTETVKRKLSLGARILQVGG 92

Query:   145 YEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDETQ 204
              EKIF++ F     E+L K Y CYLST+AGP+ G+L++S+ K+AFCS+   S KV D  Q
Sbjct:    93 LEKIFKRLFRVSEGEKLFKMYQCYLSTTAGPIAGLLFISSKKMAFCSER--SIKV-DSPQ 149

Query:   205 WS----YYKVVIPLSQLKAVNPSTSKAKPAEKYIQVISVDNHEFWFMGFVHYDSAVKNLL 260
                   +YKV IPL ++  VN S +  KP++KY++V++VD  +FWFMGF+ Y  A   L 
Sbjct:   150 GDIIRVHYKVSIPLCKIDRVNQSQNTKKPSQKYLEVVTVDGFDFWFMGFLSYQKAFNCLE 209

Query:   261 GAL 263
              AL
Sbjct:   210 KAL 212


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.311   0.126   0.372    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      268       268   0.00096  114 3  11 23  0.43    34
                                                     32  0.39    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  611 (65 KB)
  Total size of DFA:  217 KB (2119 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  27.50u 0.26s 27.76t   Elapsed:  00:00:01
  Total cpu time:  27.50u 0.26s 27.76t   Elapsed:  00:00:01
  Start:  Fri May 10 06:50:01 2013   End:  Fri May 10 06:50:02 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SE96	GEML1_ARATH	No assigned EC number	0.6919	0.8432	0.8725	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00050647 hypothetical protein (294 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	268
cd13222	127	cd13222, PH-GRAM_GEM, GLABRA 2 expression modulato	1e-81
smart00568	60	smart00568, GRAM, domain in glucosyltransferases,	2e-14
cd10570	94	cd10570, PH-GRAM, Pleckstrin Homology-Glucosyltran	1e-13
pfam02893	60	pfam02893, GRAM, GRAM domain	4e-12
cd13216	117	cd13216, PH-GRAM2_AGT26, Autophagy-related protein	8e-05
cd13351	125	cd13351, PH-GRAM1_TCB1D9_TCB1D9B, TBC1 domain fami	0.003

>gnl|CDD|241376 cd13222, PH-GRAM_GEM, GLABRA 2 expression modulator (GEM) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain

 Score =  241 bits (617), Expect = 1e-81
 Identities = 75/125 (60%), Positives = 92/125 (73%), Gaps = 1/125 (0%)

Query: 140 LAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKV 199
           L EGG EK+FRQ+F   P E+LLK   CYLST+AGPV G L++STAK+AFCSD PLS+  
Sbjct: 1   LQEGGVEKVFRQTFGVGPGEKLLKASQCYLSTTAGPVAGTLFISTAKVAFCSDRPLSFTS 60

Query: 200 -GDETQWSYYKVVIPLSQLKAVNPSTSKAKPAEKYIQVISVDNHEFWFMGFVHYDSAVKN 258
              +   SYYKVVIPL ++KAVNPS +   P+EKYIQ+++VD  EFWFMGFV+Y  A K 
Sbjct: 61  PSGQLVRSYYKVVIPLRKIKAVNPSENVKNPSEKYIQIVTVDGFEFWFMGFVNYQKAFKY 120

Query: 259 LLGAL 263
           L  AL
Sbjct: 121 LQQAL 125

GEM interacts with CDT1, a pre-replication complex component that is involved in DNA replication, and with TTG1 (Transparent Testa GLABRA 1), a transcriptional regulator of epidermal cell fate. GEM controls the level of histone H3K9 methylation at the promoters of the GLABRA 2 and CAPRICE (CPC) genes, which are essential for epidermis patterning. GEM also regulates cell division in different root cell types. GEM regulates proliferation-differentiation decisions by integrating DNA replication, cell division and transcriptional controls. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 127

>gnl|CDD|214725 smart00568, GRAM, domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins

 Score = 66.1 bits (162), Expect = 2e-14
 Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 11/68 (16%)

Query: 157 PEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKVVIPLSQ 216
            EE+L+  Y+CYLS   GPV G LY+S  +L F S+ P              KVVIPL+ 
Sbjct: 4   EEEKLIADYSCYLSR-TGPVQGRLYISNYRLCFRSNLPGKLT----------KVVIPLAD 52

Query: 217 LKAVNPST 224
           +  +  ST
Sbjct: 53  ITRIEKST 60

Length = 60

>gnl|CDD|241306 cd10570, PH-GRAM, Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain

 Score = 64.6 bits (158), Expect = 1e-13
 Identities = 21/103 (20%), Positives = 37/103 (35%), Gaps = 14/103 (13%)

Query: 158 EEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKVVIPLSQL 217
            E+   TY C      GPV G LYL+  +L F S +            S  ++ +PL  +
Sbjct: 1   LEKKDVTYICPFHV--GPVEGTLYLTNYRLYFKSKER----------DSPTELDVPLGVI 48

Query: 218 KAVNPSTSKAK-PAEKYIQVISVDNHEFWFMGFVHYDSAVKNL 259
             V      +       +++   D        F   D + +++
Sbjct: 49  SRVEKVGGSSSGENSYGLEITCKD-MRNLRFAFKQEDHSRRDI 90

Myotubularin-related proteins are a subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids. Mutations in this family cause the human neuromuscular disorders myotubular myopathy and type 4B Charcot-Marie-Tooth syndrome. 6 of the 13 MTMRs (MTMRs 5, 9-13) contain naturally occurring substitutions of residues required for catalysis by PTP family enzymes. Although these proteins are predicted to be enzymatically inactive, they are thought to function as antagonists of endogenous phosphatase activity or interaction modules. Most MTMRs contain a N-terminal PH-GRAM domain, a Rac-induced recruitment domain (RID) domain, a PTP domain (which may be active or inactive), a SET-interaction domain, and a C-terminal coiled-coil region. In addition some members contain DENN domain N-terminal to the PH-GRAM domain and FYVE, PDZ, and PH domains C-terminal to the coiled-coil region. The GRAM domain, found in myotubularins, glucosyltransferases, and other putative membrane-associated proteins, is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 94

>gnl|CDD|217271 pfam02893, GRAM, GRAM domain

 Score = 59.6 bits (145), Expect = 4e-12
 Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 10/68 (14%)

Query: 157 PEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKVVIPLSQ 216
           PEE+L+  Y+CYL     PV G LYL+  +L F SD       GD T      +VIPL+ 
Sbjct: 3   PEEKLIADYSCYLQRPISPVQGRLYLTNNRLCFRSDKF-----GDLT-----VLVIPLAD 52

Query: 217 LKAVNPST 224
           ++ V    
Sbjct: 53  IERVEKEK 60

The GRAM domain is found in in glucosyltransferases, myotubularins and other putative membrane-associated proteins. Length = 60

>gnl|CDD|241370 cd13216, PH-GRAM2_AGT26, Autophagy-related protein 26/Sterol 3-beta-glucosyltransferase Pleckstrin homology (PH) domain, repeat 2

 Score = 41.0 bits (97), Expect = 8e-05
 Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 11/76 (14%)

Query: 149 FRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYY 208
           FR+ F     E+LL  Y  YL     PV G LY+S     F S  P           +  
Sbjct: 3   FRKHFALPESEKLLAYYYAYLQRVL-PVYGKLYISDNYFCFRSLLP----------GTRT 51

Query: 209 KVVIPLSQLKAVNPST 224
           K+++PL  ++ V    
Sbjct: 52  KMILPLKDIENVEKEK 67

ATG26 (also called UGT51/UDP-glycosyltransferase 51), a member of the glycosyltransferase 28 family, resulting in the biosynthesis of sterol glucoside. ATG26 in decane metabolism and autophagy. There are 32 known autophagy-related (ATG) proteins, 17 are components of the core autophagic machinery essential for all autophagy-related pathways and 15 are the additional components required only for certain pathways or species. The core autophagic machinery includes 1) the ATG9 cycling system (ATG1, ATG2, ATG9, ATG13, ATG18, and ATG27), 2) the phosphatidylinositol 3-kinase complex (ATG6/VPS30, ATG14, VPS15, and ATG34), and 3) the ubiquitin-like protein system (ATG3, ATG4, ATG5, ATG7, ATG8, ATG10, ATG12, and ATG16). Less is known about how the core machinery is adapted or modulated with additional components to accommodate the nonselective sequestration of bulk cytosol (autophagosome formation) or selective sequestration of specific cargos (Cvt vesicle, pexophagosome, or bacteria-containing autophagosome formation). The pexophagosome-specific additions include the ATG30-ATG11-ATG17 receptor-adaptors complex, the coiled-coil protein ATG25, and the sterol glucosyltransferase ATG26. ATG26 is necessary for the degradation of medium peroxisomes. It contains 2 GRAM domains and a single PH domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 117

>gnl|CDD|241505 cd13351, PH-GRAM1_TCB1D9_TCB1D9B, TBC1 domain family members 9 and 9B (TBC1D9 and TBC1D9B) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain, repeat 1

 Score = 36.5 bits (85), Expect = 0.003
 Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 13/103 (12%)

Query: 149 FRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYY 208
           F + F    EE+L+  Y+C       P  G LYLS   L F      S+ +G ET     
Sbjct: 5   FHKLFGMPEEEKLVNYYSCSYWKGKVPRQGWLYLSVNHLCF-----YSFLLGKET----- 54

Query: 209 KVVIPLSQLKAVNPSTSKAKPAEKYIQVISVDNHEFWFMGFVH 251
           K+VI  + +  +  + S   P    I+V++ D  E +F  F++
Sbjct: 55  KLVIRWTDVTQLEKNNSLLLP--DSIKVVTRDK-EHYFSMFLN 94

TBC1D9 and TCB1D9B may act as a GTPase-activating proteins for Rab family protein(s). TBC1D9 and TCB1D9B contain two N-terminal PH-GRAM domain and a C-terminal Rab-GTPase-TBC (Tre-2, BUB2p, and Cdc16p) domain. This cd contains the first repeat of the PH-GRAM domain. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 125

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	268
PF02893	69	GRAM: GRAM domain; InterPro: IPR004182 The GRAM do	99.28
smart00568	61	GRAM domain in glucosyltransferases, myotubularins	99.05
PF14470	96	bPH_3: Bacterial PH domain	95.27
KOG4347	671	consensus GTPase-activating protein VRP [General f	85.7
PF08498	67	Sterol_MT_C: Sterol methyltransferase C-terminal;	84.63

>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins

Probab=99.28  E-value=1.6e-12  Score=94.01  Aligned_cols=66  Identities=39%  Similarity=0.596  Sum_probs=45.8

Q ss_pred             eeeeccCCChhHHHhhhhcceeecCCCCeeeEEEeecceeeeecCCCcceecCCceeeeEEEEEEecCccccccC
Q 024435          148 IFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKVVIPLSQLKAVNP  222 (268)
Q Consensus       148 iFkQ~F~v~~~EkLlKa~aCYLSTsaGPVaG~LfIST~kvAFcSDrpl~~~s~g~~~~~yYKVvIPL~kik~Vnp  222 (268)
                      -|++.|...++|+|...|.|+|.++.+|+.|.||||+.+|+|+|+....-.         ++++|||..|..|..
T Consensus         2 ~f~~~F~lp~~E~li~~~~c~l~~~~~~~~G~LyiT~~~lcF~s~~~~~~~---------~~~~ipl~~I~~i~k   67 (69)
T PF02893_consen    2 KFRKLFKLPEEERLIEEYSCALFKSKIPVQGRLYITNNYLCFYSNKFGSKT---------CKFVIPLSDIKSIEK   67 (69)
T ss_dssp             ---------TT--EEEEEEETTTEE---EEEEEEEESSEEEEEESSSSS-E----------EEEEEGGGEEEEEE
T ss_pred             cccccccCCCCCeEEEEEEEEEECCccceeeEEEECCCEEEEEECCCCCce---------EEEEEEhHheeEEEE
Confidence            589999999999999999999999999999999999999999998765422         689999999998864

It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.

>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins

Probab=99.05  E-value=1e-10  Score=82.83  Aligned_cols=59  Identities=46%  Similarity=0.745  Sum_probs=50.8

Q ss_pred             CChhHHHhhhhcceeecCCCCeeeEEEeecceeeeecCCCcceecCCceeeeEEEEEEecCccccccCC
Q 024435          155 TVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKVVIPLSQLKAVNPS  223 (268)
Q Consensus       155 v~~~EkLlKa~aCYLSTsaGPVaG~LfIST~kvAFcSDrpl~~~s~g~~~~~yYKVvIPL~kik~Vnps  223 (268)
                      ..++|+|...|.|+|+ +.+|+.|.||||+.+|+|+|+.+-...         .+++|||+.|.+|+..
T Consensus         2 l~~~E~l~~~~~C~l~-~~~~~~G~lyiT~~~l~F~S~~~~~~~---------~~~~ipl~~I~~i~k~   60 (61)
T smart00568        2 LPEEEKLIADYSCYLS-RDGPVQGRLYISNYRLCFRSDLPGKLT---------PKVVIPLADITRIEKS   60 (61)
T ss_pred             cCCCcEEEEEEEeEEC-CCccccEEEEEECCEEEEEccCCCCee---------EEEEEEHHHeeEEEEC
Confidence            4689999999999999 669999999999999999998765322         2899999999998753

>PF14470 bPH_3: Bacterial PH domain

Probab=95.27  E-value=0.089  Score=39.13  Aligned_cols=94  Identities=15%  Similarity=0.157  Sum_probs=65.5

Q ss_pred             ChhHHHhhhhcceeecCCCCeeeEEEeecceeeeecCCCcceecCCceeeeEEEEEEecCccccccCCCCCCCCcCceEE
Q 024435          156 VPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKVVIPLSQLKAVNPSTSKAKPAEKYIQ  235 (268)
Q Consensus       156 ~~~EkLlKa~aCYLSTsaGPVaG~LfIST~kvAFcSDrpl~~~s~g~~~~~yYKVvIPL~kik~Vnps~n~~nPseKYIq  235 (268)
                      .+||+.+-...|.+-...+.-.|+|+++++||-||+-..+.    +     .....||+++|.+|+-....   --..|.
T Consensus         2 ~~~E~I~~~~~~~~~~~~~~~~g~l~~TnkRlif~~~~~~~----~-----~~~~~i~y~~I~~v~~~~g~---~~~~i~   69 (96)
T PF14470_consen    2 KEDEEIEYVAVGSYNYFFTSFPGVLVLTNKRLIFYSKGMFG----G-----KKFESIPYDDITSVSFKKGI---LGGKIT   69 (96)
T ss_pred             cCCCEEEEEEEEEEeecccCceeEEEEeCCEEEEEEcccCC----C-----ceEEEEEhhheEEEEEEccc---cccEEE
Confidence            46888888888887766778899999999999999874331    1     22589999999999987333   446799


Q ss_pred             EEEecCceeeeeeeccHHHHHHHHHHhhC
Q 024435          236 VISVDNHEFWFMGFVHYDSAVKNLLGALG  264 (268)
Q Consensus       236 IVTvD~~EFWFMGFvnYdKA~k~Lq~Al~  264 (268)
                      |.| ++..+ =++.+. .+-++-+-+.|+
T Consensus        70 i~~-~~~~~-~i~~i~-k~~~~~~~~~i~   95 (96)
T PF14470_consen   70 IET-NGEKI-KIDNIQ-KGDVKEFYEYIK   95 (96)
T ss_pred             EEE-CCEEE-EEEEcC-HHHHHHHHHHHh
Confidence            988 44444 445443 333344444443

>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]

Probab=85.70  E-value=0.82  Score=47.89  Aligned_cols=96  Identities=22%  Similarity=0.266  Sum_probs=75.2

Q ss_pred             eccCCChhHHHhhhhcceeecCCC--CeeeEEEeecceeeeecCCCcceecCCceeeeEEEEEEecCccccccCCCCCCC
Q 024435          151 QSFDTVPEEQLLKTYACYLSTSAG--PVVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKVVIPLSQLKAVNPSTSKAK  228 (268)
Q Consensus       151 Q~F~v~~~EkLlKa~aCYLSTsaG--PVaG~LfIST~kvAFcSDrpl~~~s~g~~~~~yYKVvIPL~kik~Vnps~n~~n  228 (268)
                      -.|...  |+|.-.-.|=|-|..-  -..|-||+||..++|.||-+=..           .+++||.-|+.|.-.. ..+
T Consensus        14 ~~Frlp--e~l~~~~~~~l~~p~s~~~~~G~l~~s~~f~cF~s~~~~~c-----------~~~~Pl~~vr~ve~~~-~ss   79 (671)
T KOG4347|consen   14 AFFRLP--EKLDGSTMCNLWTPYSRYHEQGRLFLSTNFICFASDTEWLC-----------SFITPLLAVRSVERLD-DSS   79 (671)
T ss_pred             ceeecc--hhcCceeecccCCCcchhhccceeeeccceEEeecCCcccc-----------eEeeehhhhhhhhccC-ccc
Confidence            445555  9999999999999866  58899999999999999987543           5999999999998764 222


Q ss_pred             CcCceEEEEEecCceeeeeeeccHHHHHHHHH
Q 024435          229 PAEKYIQVISVDNHEFWFMGFVHYDSAVKNLL  260 (268)
Q Consensus       229 PseKYIqIVTvD~~EFWFMGFvnYdKA~k~Lq  260 (268)
                      --..=|-+.|-.+-.|-|-|+..=++.+.-+.
T Consensus        80 ~~~~~i~~~~~~~~~~~f~~~~~r~~~~~k~~  111 (671)
T KOG4347|consen   80 LFTQLISLFTSNMVGMRFGGLTERLKLLSKLH  111 (671)
T ss_pred             cchhhhHHhhcCcceEEecchhhHHHHHHHHh
Confidence            22333667888999999999887777765544

>PF08498 Sterol_MT_C: Sterol methyltransferase C-terminal; InterPro: IPR013705 This domain is found to the C terminus of a methyltransferase domain (IPR013216 from INTERPRO) in fungal and plant sterol methyltransferases []

Probab=84.63  E-value=0.64  Score=35.66  Aligned_cols=52  Identities=19%  Similarity=0.244  Sum_probs=41.7

Q ss_pred             HHhhhhhhHHHhhhhhhhhcccccccccCcChHHHHHhhhhhhhhhhhcCCcceeeeec
Q 024435           94 LSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQS  152 (268)
Q Consensus        94 l~k~gkk~~eatrKae~~a~~iw~Hlk~gpsisdta~GKlslGaKiL~eGG~ekiFkQ~  152 (268)
                      +++|||.+.       ...=.+-|-+++.|+-+-.+.--|..+|.-|.+||-++||--.
T Consensus         7 ~t~~Gr~~t-------~~~v~~LE~lglAPkGt~~v~~~L~~aa~~Lv~GG~~giFTPM   58 (67)
T PF08498_consen    7 MTWLGRFIT-------HALVRVLEFLGLAPKGTSKVAEMLAKAADGLVEGGKTGIFTPM   58 (67)
T ss_pred             ccHHHHHHH-------HHHHHHHHHHCcCCCcHHHHHHHHHHHHHHHHHhhhcCCcCch
Confidence            567787433       2333556778999999999999999999999999999999643

; GO: 0008168 methyltransferase activity, 0006694 steroid biosynthetic process

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	268
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 2e-04
 Identities = 42/315 (13%), Positives = 86/315 (27%), Gaps = 90/315 (28%)

Query: 1   MNQQQADHQIETKASSETHHMQQ-QQEPHSSDYA--------PYPK----IDPNDVAPPP 47
              Q+  +QI+   +S + H    +   HS            PY      +   +V    
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL--NV---- 253

Query: 48  QNWSN-------------VSTATGPAPINESAATTMPAESNPYVSPSPIEP--SSSKMKG 92
              +              ++T        +     + A +  ++S        +  ++K 
Sbjct: 254 --QNAKAWNAFNLSCKILLTTR------FKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305

Query: 93  ALSNW-GKKAA----EATK---RAEDLAG-------NMWQHLKTGPSLADAAVGRIAQRT 137
            L  +   +      E      R   +           W + K    +    +  I + +
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH---VNCDKLTTIIESS 362

Query: 138 -KVLAEGGYEK------IFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFC 190
             VL    Y K      +F  S   +P   LL      +  S   VV V  L    L   
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAH-IPT-ILLSLIWFDVIKSDVMVV-VNKLHKYSLVEK 419

Query: 191 SDDPLSYKVGDETQWSYYKVVIPLSQLKAVNPSTSKAKPAEKY----------IQVISVD 240
                +  +       Y ++ + L    A++         + Y          +    +D
Sbjct: 420 QPKESTISIPS----IYLELKVKLENEYALH-----RSIVDHYNIPKTFDSDDLIPPYLD 470

Query: 241 NHEFWFMGFVHYDSA 255
            + +  +G  H  + 
Sbjct: 471 QYFYSHIGH-HLKNI 484

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	268
1zsq_A	528	Myotubularin-related protein 2; protein-phospholip	88.21
1lw3_A	657	Myotubularin-related protein 2; protein-phosphate	86.49
2hth_B	140	Vacuolar protein sorting protein 36; GLUE domain,	81.92

>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A*

Probab=88.21  E-value=0.85  Score=44.83  Aligned_cols=88  Identities=16%  Similarity=0.178  Sum_probs=55.2

Q ss_pred             cCCChhHHHhhhhc--ceeecCCCCeeeEEEeecceeeeecCCCcceecCCceeeeEEEEEEecCccccccCCCCCCCCc
Q 024435          153 FDTVPEEQLLKTYA--CYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKVVIPLSQLKAVNPSTSKAKPA  230 (268)
Q Consensus       153 F~v~~~EkLlKa~a--CYLSTsaGPVaG~LfIST~kvAFcSDrpl~~~s~g~~~~~yYKVvIPL~kik~Vnps~n~~nPs  230 (268)
                      |...|||.++....  =|+..-.|++.|+|||++.||.|.+...      +.    .+.+-|||..|..|..........
T Consensus         7 ~~lLpGE~i~~~~~~V~~~~~~~~~~~GtL~lTn~rLiF~~~~~------~~----~~~~~iPL~~I~~vek~~~~s~~~   76 (528)
T 1zsq_A            7 PPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMER------DP----PFVLDASLGVINRVEKIGGASSRG   76 (528)
T ss_dssp             CCCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSS------SS----CEEEEEEGGGEEEEEEECCTTCCS
T ss_pred             CccCCCCeEEEecCCEEEeCCCCCceeEEEEEECCEEEEEccCC------Cc----cEEEEeeccceEEEEEcCCCCcCC
Confidence            56789998885522  1455557899999999999999998521      01    235789998877776432111111


Q ss_pred             --CceEEEEEecCceeeeeeecc
Q 024435          231 --EKYIQVISVDNHEFWFMGFVH  251 (268)
Q Consensus       231 --eKYIqIVTvD~~EFWFMGFvn  251 (268)
                        --.|+|..-|- .++=.+|-.
T Consensus        77 ~~~~~l~I~CKDf-r~~~f~f~~   98 (528)
T 1zsq_A           77 ENSYGLETVCKDI-RNLRFAHKP   98 (528)
T ss_dssp             TTCSEEEEEETTT-EEEEEECCG
T ss_pred             CCCceEEEEccCC-eEEEEEecC
Confidence              12477766654 444445653

>1lw3_A Myotubularin-related protein 2; protein-phosphate complex, hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1m7r_A

Probab=86.49  E-value=1.1  Score=45.28  Aligned_cols=89  Identities=17%  Similarity=0.192  Sum_probs=55.6

Q ss_pred             ccCCChhHHHhhhhc--ceeecCCCCeeeEEEeecceeeeecCCCcceecCCceeeeEEEEEEecCccccccCCCCCCCC
Q 024435          152 SFDTVPEEQLLKTYA--CYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKVVIPLSQLKAVNPSTSKAKP  229 (268)
Q Consensus       152 ~F~v~~~EkLlKa~a--CYLSTsaGPVaG~LfIST~kvAFcSDrpl~~~s~g~~~~~yYKVvIPL~kik~Vnps~n~~nP  229 (268)
                      -|...|||.+.....  =|+..-.|++.|+|||++.||.|++...      +.    .+.+-|||..|..|.........
T Consensus        78 ~~~LLPGE~v~~~~~~V~~~~p~~~~~~GtL~lTnyrLiF~~~~~------~~----~~~~~IPL~~I~~Iekv~g~s~~  147 (657)
T 1lw3_A           78 EPPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMER------DP----PFVLDASLGVINRVEKIGGASSR  147 (657)
T ss_dssp             CCCCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSS------SS----CEEEEEEGGGEEEEEEECCTTCC
T ss_pred             CCccCCCeeEEEEeCCEEEecCCCCceeEEEEEECCEEEEEecCC------Cc----ceEEEecccceEEEEecCCCccc
Confidence            377899999984421  1444446899999999999999998521      11    23567999888777653211111


Q ss_pred             cC--ceEEEEEecCceeeeeeecc
Q 024435          230 AE--KYIQVISVDNHEFWFMGFVH  251 (268)
Q Consensus       230 se--KYIqIVTvD~~EFWFMGFvn  251 (268)
                      .+  -.|+|..-| |.++=.+|-.
T Consensus       148 g~~~~~l~I~CKD-fR~~~f~f~~  170 (657)
T 1lw3_A          148 GENSYGLETVCKD-IRNLRFAHKP  170 (657)
T ss_dssp             STTCSEEEEEETT-TEEEEEECCG
T ss_pred             CCCCceEEEEecC-CcEEEEEeCC
Confidence            11  236666655 4444455653

>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A

Probab=81.92  E-value=1.4  Score=35.94  Aligned_cols=51  Identities=22%  Similarity=0.209  Sum_probs=34.3

Q ss_pred             CCCeeeEEEeecceeeeecCCCcceecCCceeeeEEEEEEecCccccccCCCCCCCCcCceE
Q 024435          173 AGPVVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKVVIPLSQLKAVNPSTSKAKPAEKYI  234 (268)
Q Consensus       173 aGPVaG~LfIST~kvAFcSDrpl~~~s~g~~~~~yYKVvIPL~kik~Vnps~n~~nPseKYI  234 (268)
                      ++---|.|||+|.||.|-.+.. .          ..-+.|||..|+.+...+..-..+-|++
T Consensus        35 ~~~k~G~l~LTshRli~~d~~~-~----------~~s~~lpl~~v~~~e~~~~~f~~s~Ki~   85 (140)
T 2hth_B           35 IKFDAGTLLLSTHRLIWRDQKN-H----------ECCMAILLSQIVFIEEQAAGIGKSAKIV   85 (140)
T ss_dssp             SCCCCEEEEEESSEEEEEETTC-C----------SCCEEEEGGGEEEEEEECCTTSSCCEEE
T ss_pred             CCCcCCEEEEecCEEEEecCCC-C----------ceEEEEEhHHeeeeeeeccccccCceEE
Confidence            4568899999999999965422 0          0236777777777776665555555554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	268
d1zsqa1	125	Myotubularin-related protein 2, N-terminal domain	95.97
d2rnrb1	108	TFIIH basal transcription factor complex p62 subun	91.51

>d1zsqa1 b.55.1.8 (A:74-198) Myotubularin-related protein 2, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: GRAM domain
domain: Myotubularin-related protein 2, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.97  E-value=0.0058  Score=47.11  Aligned_cols=81  Identities=17%  Similarity=0.258  Sum_probs=52.1

Q ss_pred             ChhHHHhhh--hcceeecCCCCeeeEEEeecceeeeecCCCcceecCCceeeeEEEEEEecCccccccCCCCCC--CCcC
Q 024435          156 VPEEQLLKT--YACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKVVIPLSQLKAVNPSTSKA--KPAE  231 (268)
Q Consensus       156 ~~~EkLlKa--~aCYLSTsaGPVaG~LfIST~kvAFcSDrpl~~~s~g~~~~~yYKVvIPL~kik~Vnps~n~~--nPse  231 (268)
                      .|||.+.-.  -.=|+..-.||+-|+|||++-|+.|-++..     +.     .+.+-|||..|..|.......  +-.-
T Consensus         6 lpGE~i~~~~~~V~~~~p~~~~~~G~L~lTnyrliF~~~~~-----~~-----~~~~~ipl~~I~~v~k~~~~~~~~~~~   75 (125)
T d1zsqa1           6 LPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMER-----DP-----PFVLDASLGVINRVEKIGGASSRGENS   75 (125)
T ss_dssp             CTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSS-----SS-----CEEEEEEGGGEEEEEEECCTTCCSTTC
T ss_pred             CCCcEEEEeeccEEEEccCCCccceEEEEEeeEEEEEcCCC-----Cc-----cEEEEeccceeeeeeecccccccCCcc
Confidence            567765422  114666668999999999999999976421     11     124679999888886432222  1222


Q ss_pred             ceEEEEEecCceeee
Q 024435          232 KYIQVISVDNHEFWF  246 (268)
Q Consensus       232 KYIqIVTvD~~EFWF  246 (268)
                      -.|+|+.-|---+=|
T Consensus        76 ~~L~I~CKDfr~~~f   90 (125)
T d1zsqa1          76 YGLETVCKDIRNLRF   90 (125)
T ss_dssp             SEEEEEETTTEEEEE
T ss_pred             ccEEEEeccCeEEEE
Confidence            369999988655544

>d2rnrb1 b.55.1.9 (B:1-108) TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: TFIIH domain
domain: TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.51  E-value=0.42  Score=36.40  Aligned_cols=66  Identities=18%  Similarity=0.258  Sum_probs=49.8

Q ss_pred             eeeEEEeecceeeeecCCCcceecCCceeeeEEEEEEecCccccccCCCCCCCCcCceEEEEEecCceeeeeeeccHHHH
Q 024435          176 VVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKVVIPLSQLKAVNPSTSKAKPAEKYIQVISVDNHEFWFMGFVHYDSA  255 (268)
Q Consensus       176 VaG~LfIST~kvAFcSDrpl~~~s~g~~~~~yYKVvIPL~kik~Vnps~n~~nPseKYIqIVTvD~~EFWFMGFvnYdKA  255 (268)
                      +.|+|||++.+|+|..+.+=.           -+|.|++..|+.-..|  .+..+.-=++||.-|+-.|=|- |.|+.-|
T Consensus        20 ~~GtL~l~~d~l~W~p~~~~~-----------~~v~~~~~~I~~~q~S--pe~s~Kv~Lkiv~~~~~s~~F~-Ftn~~~~   85 (108)
T d2rnrb1          20 QDGALYLMAERIAWAPEGKDR-----------FTISHMYADIKCQKIS--PEGKAKIQLQLVLHAGDTTNFH-FSNESTA   85 (108)
T ss_dssp             CEEEEEECSSEEEEEESSCSS-----------CSEEEETTTEEEEEEC--CTTCSSEEEEEEETTSCEEEEE-ECCTTTH
T ss_pred             CCcEEEEEcCeEEEEcCCCCC-----------ceEEEEhhhhhceecC--CCCcccceeEEEEeCCCeEEEE-ECChHHH
Confidence            579999999999998654321           1488999999876654  3555666699999999888774 8888544