Query 024436
Match_columns 268
No_of_seqs 245 out of 2025
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 04:35:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024436.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024436hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1520 Predicted alkaloid syn 100.0 5.1E-32 1.1E-36 236.6 18.1 233 33-267 114-376 (376)
2 PF08450 SGL: SMP-30/Gluconola 99.9 5.5E-20 1.2E-24 157.5 21.1 165 24-199 33-223 (246)
3 COG3386 Gluconolactonase [Carb 99.9 7.4E-20 1.6E-24 160.6 22.3 207 33-259 24-300 (307)
4 KOG4499 Ca2+-binding protein R 99.7 1.1E-15 2.4E-20 125.6 14.8 142 88-235 137-289 (310)
5 PLN02919 haloacid dehalogenase 99.6 2.1E-13 4.5E-18 137.7 27.2 207 33-268 623-889 (1057)
6 PF08450 SGL: SMP-30/Gluconola 99.6 9.4E-14 2E-18 118.9 20.9 200 36-256 2-245 (246)
7 PF03088 Str_synth: Strictosid 99.6 8.7E-15 1.9E-19 104.6 6.6 87 37-141 1-88 (89)
8 PLN02919 haloacid dehalogenase 99.5 3.8E-11 8.2E-16 121.5 25.9 147 33-187 567-768 (1057)
9 COG4257 Vgb Streptogramin lyas 99.4 9.5E-11 2.1E-15 98.9 21.2 230 24-267 52-305 (353)
10 PF10282 Lactonase: Lactonase, 99.4 1.9E-10 4.1E-15 103.5 24.1 150 24-177 78-268 (345)
11 PRK11028 6-phosphogluconolacto 99.4 4.9E-10 1.1E-14 99.9 24.9 139 35-176 81-250 (330)
12 COG4257 Vgb Streptogramin lyas 99.4 1.4E-10 3.1E-15 97.9 19.7 226 24-265 94-345 (353)
13 PF10282 Lactonase: Lactonase, 99.3 6.2E-10 1.3E-14 100.1 21.3 144 33-177 143-315 (345)
14 PRK11028 6-phosphogluconolacto 99.3 7.1E-09 1.5E-13 92.4 25.5 148 24-176 27-197 (330)
15 TIGR02658 TTQ_MADH_Hv methylam 99.2 5.5E-09 1.2E-13 93.4 20.5 101 90-200 27-148 (352)
16 TIGR03866 PQQ_ABC_repeats PQQ- 99.1 8.8E-07 1.9E-11 76.5 30.8 143 24-173 23-176 (300)
17 TIGR02604 Piru_Ver_Nterm putat 99.1 2E-08 4.4E-13 91.1 21.2 187 25-262 4-208 (367)
18 COG2706 3-carboxymuconate cycl 99.0 4.3E-08 9.4E-13 85.5 19.4 139 36-176 147-312 (346)
19 COG3391 Uncharacterized conser 99.0 1.5E-07 3.3E-12 85.8 24.1 183 34-233 74-273 (381)
20 COG2706 3-carboxymuconate cycl 99.0 1.9E-07 4.2E-12 81.5 22.9 140 34-176 89-266 (346)
21 TIGR02658 TTQ_MADH_Hv methylam 99.0 4.9E-07 1.1E-11 81.0 25.6 145 23-174 88-268 (352)
22 TIGR03866 PQQ_ABC_repeats PQQ- 99.0 1.9E-06 4.2E-11 74.4 28.6 123 46-175 2-135 (300)
23 PF02239 Cytochrom_D1: Cytochr 98.9 1E-07 2.2E-12 86.4 16.9 170 86-268 12-203 (369)
24 PRK02888 nitrous-oxide reducta 98.8 6.3E-07 1.4E-11 84.7 20.2 153 22-182 225-401 (635)
25 PF02239 Cytochrom_D1: Cytochr 98.8 9.4E-06 2E-10 73.7 25.1 233 24-268 28-303 (369)
26 TIGR03606 non_repeat_PQQ dehyd 98.7 3.5E-06 7.6E-11 77.8 20.3 152 24-177 21-252 (454)
27 PF01731 Arylesterase: Arylest 98.7 1.1E-07 2.3E-12 67.7 7.6 53 86-140 32-84 (86)
28 COG3391 Uncharacterized conser 98.6 8.5E-06 1.8E-10 74.4 21.0 147 24-176 108-275 (381)
29 KOG1520 Predicted alkaloid syn 98.5 5.5E-06 1.2E-10 73.6 15.8 140 32-176 52-241 (376)
30 TIGR02604 Piru_Ver_Nterm putat 98.5 3.2E-06 7E-11 76.7 14.1 64 109-176 123-205 (367)
31 PRK05137 tolB translocation pr 98.5 0.00019 4.1E-09 66.6 26.0 131 36-169 204-348 (435)
32 PF03022 MRJP: Major royal jel 98.5 0.00011 2.4E-09 64.5 22.3 141 36-176 3-207 (287)
33 COG3386 Gluconolactonase [Carb 98.5 1.8E-05 4E-10 69.8 17.3 145 85-267 42-193 (307)
34 PF06977 SdiA-regulated: SdiA- 98.4 0.0003 6.6E-09 60.2 23.4 150 24-175 11-192 (248)
35 PRK04792 tolB translocation pr 98.4 0.00027 5.9E-09 65.9 24.6 132 38-172 222-368 (448)
36 PRK04922 tolB translocation pr 98.4 0.00036 7.8E-09 64.7 25.3 131 37-170 207-351 (433)
37 PF07995 GSDH: Glucose / Sorbo 98.3 2.4E-05 5.2E-10 70.0 15.1 142 33-176 1-203 (331)
38 PRK02889 tolB translocation pr 98.3 0.00087 1.9E-08 62.1 25.3 129 38-169 200-342 (427)
39 PF06977 SdiA-regulated: SdiA- 98.3 0.00013 2.8E-09 62.5 17.8 149 22-175 53-242 (248)
40 PRK03629 tolB translocation pr 98.3 0.00098 2.1E-08 61.8 25.2 131 37-170 202-346 (429)
41 KOG4659 Uncharacterized conser 98.3 3E-05 6.6E-10 77.4 15.3 135 33-176 474-683 (1899)
42 PRK04792 tolB translocation pr 98.3 0.00016 3.5E-09 67.4 19.5 133 37-173 265-412 (448)
43 PRK05137 tolB translocation pr 98.2 0.00074 1.6E-08 62.7 23.7 81 88-171 224-307 (435)
44 PF06433 Me-amine-dh_H: Methyl 98.2 0.0001 2.2E-09 65.2 16.5 101 89-199 16-137 (342)
45 PF01436 NHL: NHL repeat; Int 98.2 2.2E-06 4.8E-11 47.7 3.7 28 109-137 1-28 (28)
46 PRK04043 tolB translocation pr 98.2 0.0031 6.6E-08 58.4 26.3 128 38-170 192-334 (419)
47 PRK00178 tolB translocation pr 98.2 0.0031 6.7E-08 58.3 26.0 130 37-169 202-345 (430)
48 TIGR03118 PEPCTERM_chp_1 conse 98.2 0.0014 3.1E-08 56.9 21.5 211 28-267 17-279 (336)
49 cd00200 WD40 WD40 domain, foun 98.1 0.0032 6.9E-08 52.5 25.9 136 34-175 10-156 (289)
50 PRK04922 tolB translocation pr 98.1 0.00049 1.1E-08 63.9 19.4 127 38-168 252-392 (433)
51 TIGR02800 propeller_TolB tol-p 98.1 0.0043 9.3E-08 56.8 25.3 132 37-171 193-338 (417)
52 PF03088 Str_synth: Strictosid 98.1 2E-05 4.4E-10 56.4 7.2 60 113-176 1-79 (89)
53 KOG4659 Uncharacterized conser 98.1 0.0003 6.5E-09 70.6 17.4 136 33-174 364-553 (1899)
54 PRK03629 tolB translocation pr 98.0 0.0038 8.3E-08 57.9 24.0 78 88-168 221-300 (429)
55 PRK02889 tolB translocation pr 98.0 0.0047 1E-07 57.2 23.6 78 88-168 218-297 (427)
56 cd00200 WD40 WD40 domain, foun 98.0 0.0036 7.7E-08 52.2 20.9 136 35-176 95-241 (289)
57 PRK01742 tolB translocation pr 98.0 0.0053 1.2E-07 56.9 23.5 131 36-172 206-350 (429)
58 KOG0291 WD40-repeat-containing 98.0 0.0029 6.4E-08 60.6 21.4 153 18-176 376-543 (893)
59 TIGR02800 propeller_TolB tol-p 98.0 0.0018 3.8E-08 59.4 20.0 136 36-175 236-386 (417)
60 PRK02888 nitrous-oxide reducta 98.0 0.00072 1.6E-08 64.4 17.4 86 26-128 166-253 (635)
61 KOG1446 Histone H3 (Lys4) meth 97.9 0.01 2.3E-07 51.4 25.2 223 34-268 15-263 (311)
62 PRK00178 tolB translocation pr 97.9 0.0056 1.2E-07 56.6 22.7 82 88-172 221-305 (430)
63 KOG0315 G-protein beta subunit 97.9 0.0072 1.6E-07 51.1 20.5 151 24-176 75-237 (311)
64 PF07433 DUF1513: Protein of u 97.9 0.015 3.4E-07 50.9 25.4 228 29-265 2-283 (305)
65 KOG1214 Nidogen and related ba 97.9 0.00033 7.2E-09 67.5 13.6 152 105-266 1063-1225(1289)
66 PRK01742 tolB translocation pr 97.9 0.0071 1.5E-07 56.0 22.5 81 88-171 226-309 (429)
67 PF05096 Glu_cyclase_2: Glutam 97.8 0.012 2.7E-07 50.5 20.9 137 87-268 65-204 (264)
68 smart00135 LY Low-density lipo 97.8 9.3E-05 2E-09 44.9 6.0 37 105-141 4-40 (43)
69 KOG0315 G-protein beta subunit 97.8 0.0055 1.2E-07 51.7 18.0 150 20-176 28-189 (311)
70 KOG0279 G protein beta subunit 97.8 0.012 2.6E-07 50.4 20.2 136 34-175 64-213 (315)
71 PF07433 DUF1513: Protein of u 97.8 0.0023 5E-08 56.0 16.4 89 85-174 23-119 (305)
72 COG3204 Uncharacterized protei 97.8 0.003 6.4E-08 54.6 16.6 151 24-176 119-305 (316)
73 PRK01029 tolB translocation pr 97.7 0.039 8.4E-07 51.2 24.9 130 38-168 189-340 (428)
74 KOG1446 Histone H3 (Lys4) meth 97.7 0.022 4.8E-07 49.4 20.8 162 24-198 92-272 (311)
75 KOG1214 Nidogen and related ba 97.7 0.0006 1.3E-08 65.8 12.3 140 32-177 1066-1219(1289)
76 TIGR03032 conserved hypothetic 97.7 0.00061 1.3E-08 59.5 11.2 73 95-176 190-263 (335)
77 PRK04043 tolB translocation pr 97.7 0.028 6.2E-07 52.0 22.7 81 89-172 212-295 (419)
78 KOG0291 WD40-repeat-containing 97.6 0.034 7.3E-07 53.6 22.3 136 35-176 267-414 (893)
79 PF05096 Glu_cyclase_2: Glutam 97.6 0.0024 5.2E-08 54.8 13.4 114 23-140 121-261 (264)
80 KOG0266 WD40 repeat-containing 97.5 0.077 1.7E-06 49.6 24.6 136 34-175 160-309 (456)
81 KOG0272 U4/U6 small nuclear ri 97.5 0.0066 1.4E-07 54.6 15.7 131 35-175 263-409 (459)
82 COG3490 Uncharacterized protei 97.5 0.042 9.1E-07 47.5 19.6 168 88-260 138-342 (366)
83 PF08662 eIF2A: Eukaryotic tra 97.5 0.015 3.2E-07 48.0 16.7 101 90-197 83-187 (194)
84 TIGR03606 non_repeat_PQQ dehyd 97.5 0.0029 6.3E-08 58.7 13.6 71 101-172 21-103 (454)
85 PF08662 eIF2A: Eukaryotic tra 97.5 0.007 1.5E-07 49.9 14.7 117 24-141 50-180 (194)
86 PF01436 NHL: NHL repeat; Int 97.5 0.00017 3.6E-09 40.0 3.4 28 33-60 1-28 (28)
87 KOG2055 WD40 repeat protein [G 97.4 0.0079 1.7E-07 54.7 15.3 106 87-200 322-428 (514)
88 PRK01029 tolB translocation pr 97.4 0.057 1.2E-06 50.1 21.8 77 89-168 304-384 (428)
89 COG4946 Uncharacterized protei 97.4 0.038 8.2E-07 50.8 19.2 104 91-199 383-487 (668)
90 KOG0263 Transcription initiati 97.4 0.018 3.9E-07 55.4 17.9 143 29-176 447-599 (707)
91 KOG0279 G protein beta subunit 97.4 0.07 1.5E-06 45.9 20.2 139 30-176 102-254 (315)
92 KOG0266 WD40 repeat-containing 97.3 0.019 4E-07 53.8 17.5 142 30-176 200-356 (456)
93 KOG0263 Transcription initiati 97.3 0.0054 1.2E-07 58.8 13.7 142 30-177 490-642 (707)
94 KOG0273 Beta-transducin family 97.3 0.12 2.6E-06 47.3 22.2 136 34-176 236-381 (524)
95 COG2133 Glucose/sorbosone dehy 97.3 0.018 3.9E-07 52.5 16.5 127 33-175 66-197 (399)
96 KOG0318 WD40 repeat stress pro 97.3 0.01 2.2E-07 54.9 14.3 143 22-172 434-591 (603)
97 PF02333 Phytase: Phytase; In 97.3 0.13 2.8E-06 46.8 21.0 139 43-187 66-235 (381)
98 KOG0293 WD40 repeat-containing 97.3 0.019 4.1E-07 51.7 15.3 134 34-173 225-373 (519)
99 KOG0973 Histone transcription 97.2 0.023 5E-07 56.4 17.2 168 34-234 70-241 (942)
100 PF13360 PQQ_2: PQQ-like domai 97.2 0.095 2.1E-06 43.8 22.6 163 87-268 43-231 (238)
101 COG3211 PhoX Predicted phospha 97.1 0.0078 1.7E-07 56.4 12.2 70 107-176 414-521 (616)
102 PF13360 PQQ_2: PQQ-like domai 97.1 0.13 2.8E-06 43.0 19.3 165 89-268 2-192 (238)
103 PTZ00421 coronin; Provisional 97.1 0.26 5.7E-06 46.6 26.0 133 35-172 77-229 (493)
104 PTZ00420 coronin; Provisional 97.1 0.31 6.7E-06 46.9 26.5 105 34-141 75-198 (568)
105 KOG0296 Angio-associated migra 97.1 0.053 1.1E-06 48.1 15.9 125 16-142 88-222 (399)
106 KOG2139 WD40 repeat protein [G 97.1 0.16 3.4E-06 45.3 18.8 150 24-177 186-368 (445)
107 PF05787 DUF839: Bacterial pro 97.1 0.011 2.3E-07 56.2 12.6 70 107-176 347-457 (524)
108 KOG0271 Notchless-like WD40 re 97.0 0.14 3E-06 46.0 18.3 101 36-142 160-278 (480)
109 COG3204 Uncharacterized protei 97.0 0.2 4.3E-06 43.7 20.6 102 34-138 86-210 (316)
110 TIGR02276 beta_rpt_yvtn 40-res 97.0 0.0043 9.3E-08 37.3 6.4 42 119-163 1-42 (42)
111 PLN00181 protein SPA1-RELATED; 97.0 0.47 1E-05 47.6 25.9 136 34-176 484-640 (793)
112 KOG0275 Conserved WD40 repeat- 97.0 0.029 6.3E-07 49.1 13.3 217 26-253 206-454 (508)
113 PF07995 GSDH: Glucose / Sorbo 96.9 0.0084 1.8E-07 53.7 9.9 60 110-174 2-72 (331)
114 COG3490 Uncharacterized protei 96.9 0.035 7.5E-07 48.1 12.8 90 85-175 86-182 (366)
115 KOG0282 mRNA splicing factor [ 96.9 0.091 2E-06 48.2 16.1 145 24-176 292-454 (503)
116 PF13449 Phytase-like: Esteras 96.8 0.028 6E-07 50.2 12.6 119 35-175 86-235 (326)
117 KOG0286 G-protein beta subunit 96.8 0.31 6.7E-06 42.3 20.7 144 29-176 141-295 (343)
118 KOG0310 Conserved WD40 repeat- 96.7 0.42 9.2E-06 44.0 19.4 142 35-182 70-224 (487)
119 KOG1274 WD40 repeat protein [G 96.7 0.64 1.4E-05 46.0 21.6 218 34-267 14-262 (933)
120 PF05787 DUF839: Bacterial pro 96.7 0.033 7.2E-07 53.0 12.9 66 107-173 433-521 (524)
121 KOG0271 Notchless-like WD40 re 96.7 0.047 1E-06 48.9 12.7 133 35-176 117-269 (480)
122 KOG0282 mRNA splicing factor [ 96.7 0.026 5.6E-07 51.6 11.3 141 33-176 214-364 (503)
123 COG2133 Glucose/sorbosone dehy 96.6 0.13 2.8E-06 47.0 15.6 44 91-134 220-263 (399)
124 PRK13616 lipoprotein LpqB; Pro 96.6 0.56 1.2E-05 45.4 20.5 138 34-176 350-518 (591)
125 KOG0318 WD40 repeat stress pro 96.6 0.67 1.5E-05 43.3 21.4 90 84-176 336-427 (603)
126 KOG2055 WD40 repeat protein [G 96.4 0.72 1.6E-05 42.4 19.5 136 34-175 214-366 (514)
127 PTZ00420 coronin; Provisional 96.4 0.61 1.3E-05 44.9 19.3 104 85-196 92-205 (568)
128 KOG0285 Pleiotropic regulator 96.4 0.68 1.5E-05 41.4 18.4 140 33-181 151-305 (460)
129 COG0823 TolB Periplasmic compo 96.4 0.34 7.3E-06 45.0 16.9 105 87-198 215-323 (425)
130 KOG0772 Uncharacterized conser 96.4 0.062 1.3E-06 49.8 11.6 135 18-177 199-340 (641)
131 KOG1539 WD repeat protein [Gen 96.3 0.11 2.3E-06 50.8 13.7 162 15-180 462-643 (910)
132 TIGR03032 conserved hypothetic 96.3 0.68 1.5E-05 40.9 17.4 170 85-267 23-231 (335)
133 PF05694 SBP56: 56kDa selenium 96.3 0.05 1.1E-06 49.9 10.8 65 110-174 312-394 (461)
134 PF03022 MRJP: Major royal jel 96.3 0.028 6E-07 49.4 9.0 65 110-175 186-256 (287)
135 KOG1273 WD40 repeat protein [G 96.3 0.36 7.7E-06 42.4 15.2 71 36-142 26-97 (405)
136 KOG2919 Guanine nucleotide-bin 96.2 0.11 2.4E-06 45.6 12.1 108 31-140 156-281 (406)
137 COG3823 Glutamine cyclotransfe 96.2 0.053 1.2E-06 44.9 9.6 51 88-138 194-257 (262)
138 KOG0278 Serine/threonine kinas 96.2 0.19 4.2E-06 42.7 12.8 110 24-140 177-297 (334)
139 PRK11138 outer membrane biogen 96.1 1 2.2E-05 41.1 22.4 160 87-265 212-392 (394)
140 PF06433 Me-amine-dh_H: Methyl 96.1 0.97 2.1E-05 40.4 23.9 207 25-239 80-326 (342)
141 KOG0294 WD40 repeat-containing 96.1 0.91 2E-05 39.9 19.1 208 43-266 51-280 (362)
142 KOG0272 U4/U6 small nuclear ri 96.1 0.43 9.3E-06 43.3 15.2 133 35-173 177-322 (459)
143 COG0823 TolB Periplasmic compo 96.1 0.19 4.1E-06 46.6 13.7 96 75-173 247-344 (425)
144 KOG0286 G-protein beta subunit 96.0 0.9 2E-05 39.5 24.0 143 27-174 49-207 (343)
145 COG4247 Phy 3-phytase (myo-ino 96.0 0.87 1.9E-05 39.0 18.7 186 2-198 6-249 (364)
146 KOG0639 Transducin-like enhanc 96.0 0.065 1.4E-06 49.6 9.8 58 113-176 513-574 (705)
147 KOG0283 WD40 repeat-containing 96.0 0.13 2.8E-06 49.9 12.3 90 85-179 387-477 (712)
148 PTZ00421 coronin; Provisional 95.9 0.26 5.6E-06 46.7 14.2 109 34-142 169-292 (493)
149 TIGR03300 assembly_YfgL outer 95.9 1.2 2.7E-05 40.1 23.4 93 45-141 65-164 (377)
150 KOG2106 Uncharacterized conser 95.9 0.75 1.6E-05 42.8 16.2 146 33-182 368-518 (626)
151 KOG4497 Uncharacterized conser 95.9 0.29 6.3E-06 43.2 13.0 127 88-232 69-198 (447)
152 KOG1407 WD40 repeat protein [F 95.9 1 2.2E-05 38.7 16.3 141 33-177 20-170 (313)
153 KOG2096 WD40 repeat protein [G 95.8 0.64 1.4E-05 40.9 14.7 31 110-140 133-163 (420)
154 COG4946 Uncharacterized protei 95.8 0.2 4.2E-06 46.3 11.9 96 33-128 401-507 (668)
155 PF00058 Ldl_recept_b: Low-den 95.6 0.057 1.2E-06 32.8 5.7 39 123-164 2-42 (42)
156 KOG0284 Polyadenylation factor 95.6 0.48 1E-05 42.9 13.5 173 35-230 98-282 (464)
157 KOG0293 WD40 repeat-containing 95.6 0.26 5.7E-06 44.6 11.9 114 24-141 303-426 (519)
158 KOG1274 WD40 repeat protein [G 95.5 0.44 9.5E-06 47.1 14.0 138 36-180 99-257 (933)
159 KOG0306 WD40-repeat-containing 95.4 0.64 1.4E-05 45.2 14.5 143 25-177 502-657 (888)
160 KOG2919 Guanine nucleotide-bin 95.4 1.4 3.1E-05 38.9 15.4 106 33-140 49-187 (406)
161 KOG1009 Chromatin assembly com 95.4 0.46 1E-05 42.9 12.5 120 34-175 66-186 (434)
162 KOG2110 Uncharacterized conser 95.3 0.29 6.2E-06 43.7 11.1 83 24-141 165-249 (391)
163 COG3211 PhoX Predicted phospha 95.3 0.33 7.2E-06 45.9 11.9 68 108-176 498-576 (616)
164 PF13449 Phytase-like: Esteras 95.3 0.35 7.6E-06 43.2 12.0 83 113-200 23-131 (326)
165 KOG1539 WD repeat protein [Gen 95.2 1.3 2.7E-05 43.7 15.7 177 34-232 449-637 (910)
166 KOG2110 Uncharacterized conser 95.1 2 4.4E-05 38.4 15.7 85 91-177 107-196 (391)
167 PLN00181 protein SPA1-RELATED; 95.1 4.1 9E-05 40.9 26.7 138 34-176 576-730 (793)
168 KOG0292 Vesicle coat complex C 95.1 0.69 1.5E-05 45.9 13.7 155 18-177 121-315 (1202)
169 KOG1407 WD40 repeat protein [F 95.0 2 4.4E-05 36.9 18.4 167 22-199 97-272 (313)
170 KOG0288 WD40 repeat protein Ti 94.9 0.5 1.1E-05 42.8 11.3 104 21-129 331-451 (459)
171 KOG0292 Vesicle coat complex C 94.9 3 6.5E-05 41.7 17.3 102 35-141 53-166 (1202)
172 PRK11138 outer membrane biogen 94.8 3.2 6.8E-05 37.9 21.2 203 45-268 120-354 (394)
173 TIGR03300 assembly_YfgL outer 94.7 3.2 6.9E-05 37.4 23.4 202 45-267 105-338 (377)
174 cd00216 PQQ_DH Dehydrogenases 94.7 4 8.7E-05 38.5 19.8 54 84-141 305-375 (488)
175 KOG0278 Serine/threonine kinas 94.7 1.5 3.2E-05 37.5 13.0 120 87-229 162-284 (334)
176 KOG1273 WD40 repeat protein [G 94.5 3.2 7E-05 36.7 17.2 139 34-173 66-268 (405)
177 KOG0645 WD40 repeat protein [G 94.5 2.9 6.3E-05 36.1 17.8 140 32-176 60-217 (312)
178 KOG2394 WD40 protein DMR-N9 [G 94.5 0.2 4.3E-06 46.8 8.1 46 113-164 336-384 (636)
179 KOG0275 Conserved WD40 repeat- 94.5 0.31 6.6E-06 42.9 8.8 102 35-141 265-379 (508)
180 KOG0646 WD40 repeat protein [G 94.2 4.6 9.9E-05 37.3 19.5 218 16-267 63-307 (476)
181 smart00135 LY Low-density lipo 94.1 0.21 4.5E-06 29.6 5.3 36 30-65 5-41 (43)
182 KOG0649 WD40 repeat protein [G 94.0 3.5 7.7E-05 35.2 18.9 158 27-199 111-284 (325)
183 KOG1963 WD40 repeat protein [G 93.9 0.97 2.1E-05 44.4 11.9 63 110-176 252-314 (792)
184 KOG4499 Ca2+-binding protein R 93.8 0.3 6.5E-06 41.3 7.3 34 108-142 210-243 (310)
185 KOG0772 Uncharacterized conser 93.8 1.4 3.1E-05 41.2 12.2 62 111-174 366-429 (641)
186 KOG2139 WD40 repeat protein [G 93.8 4.1 9E-05 36.6 14.5 86 88-176 216-303 (445)
187 KOG0316 Conserved WD40 repeat- 93.6 4.1 8.8E-05 34.6 18.5 149 24-177 9-166 (307)
188 PF02333 Phytase: Phytase; In 93.4 1.3 2.9E-05 40.3 11.4 89 24-142 200-292 (381)
189 KOG2106 Uncharacterized conser 93.4 7 0.00015 36.7 22.0 136 34-176 247-390 (626)
190 KOG1036 Mitotic spindle checkp 93.4 5.2 0.00011 35.1 17.0 107 34-141 14-125 (323)
191 KOG2096 WD40 repeat protein [G 93.3 5.4 0.00012 35.3 18.7 101 35-140 134-258 (420)
192 TIGR03118 PEPCTERM_chp_1 conse 93.3 5.3 0.00012 35.2 14.3 65 107-172 20-94 (336)
193 KOG2394 WD40 protein DMR-N9 [G 93.0 0.15 3.3E-06 47.6 4.7 77 111-195 292-369 (636)
194 KOG0288 WD40 repeat protein Ti 92.8 2.7 5.9E-05 38.2 12.1 136 24-170 295-447 (459)
195 KOG0283 WD40 repeat-containing 92.7 5.7 0.00012 38.9 15.0 147 22-176 400-568 (712)
196 KOG0303 Actin-binding protein 92.7 1.8 3.8E-05 39.3 10.7 116 24-141 166-295 (472)
197 KOG0299 U3 snoRNP-associated p 92.5 2.8 6.1E-05 38.6 11.9 64 111-176 382-448 (479)
198 KOG0640 mRNA cleavage stimulat 92.4 3.4 7.3E-05 36.4 11.8 71 102-174 165-236 (430)
199 KOG0641 WD40 repeat protein [G 92.4 6 0.00013 33.4 18.0 59 112-173 234-292 (350)
200 PF05935 Arylsulfotrans: Aryls 92.4 10 0.00022 35.8 16.9 147 88-268 126-302 (477)
201 KOG0289 mRNA splicing factor [ 92.3 9.2 0.0002 35.2 19.9 131 35-172 305-450 (506)
202 KOG0265 U5 snRNP-specific prot 92.3 2.1 4.7E-05 37.4 10.4 101 36-140 50-163 (338)
203 COG3823 Glutamine cyclotransfe 92.2 3.7 8E-05 34.3 11.2 82 88-175 66-150 (262)
204 KOG0973 Histone transcription 92.2 2.3 5.1E-05 42.8 11.9 97 88-185 149-252 (942)
205 PF01731 Arylesterase: Arylest 92.1 1.5 3.2E-05 31.1 7.9 22 156-177 55-77 (86)
206 PF11768 DUF3312: Protein of u 92.1 1.7 3.6E-05 41.2 10.3 52 87-140 278-329 (545)
207 KOG4649 PQQ (pyrrolo-quinoline 92.0 7.5 0.00016 33.6 17.9 185 39-240 16-223 (354)
208 KOG0289 mRNA splicing factor [ 91.9 8.2 0.00018 35.5 14.0 133 35-171 349-493 (506)
209 PF05694 SBP56: 56kDa selenium 91.9 9.2 0.0002 35.5 14.5 107 90-198 222-355 (461)
210 KOG3881 Uncharacterized conser 91.7 1 2.2E-05 40.6 8.1 105 85-196 221-328 (412)
211 KOG4378 Nuclear protein COP1 [ 91.7 5.1 0.00011 37.5 12.7 92 87-182 184-277 (673)
212 KOG0645 WD40 repeat protein [G 91.7 8.2 0.00018 33.4 22.9 137 34-176 15-172 (312)
213 KOG3914 WD repeat protein WDR4 91.7 3.2 7E-05 37.5 11.2 103 35-137 64-180 (390)
214 KOG0295 WD40 repeat-containing 91.6 5 0.00011 36.0 12.2 105 36-141 238-365 (406)
215 PF14583 Pectate_lyase22: Olig 91.4 3.8 8.2E-05 37.4 11.5 85 87-175 57-145 (386)
216 PF00930 DPPIV_N: Dipeptidyl p 91.3 5.2 0.00011 36.0 12.6 88 84-175 254-348 (353)
217 KOG0639 Transducin-like enhanc 91.0 13 0.00028 35.0 14.5 103 35-141 467-582 (705)
218 PF14269 Arylsulfotran_2: Aryl 91.0 9.2 0.0002 33.7 13.6 30 36-65 146-176 (299)
219 KOG0301 Phospholipase A2-activ 91.0 12 0.00026 36.4 14.8 134 35-176 142-281 (745)
220 KOG0646 WD40 repeat protein [G 90.9 2.6 5.5E-05 38.9 9.9 94 27-141 213-308 (476)
221 KOG0319 WD40-repeat-containing 90.9 3.6 7.7E-05 40.1 11.3 124 35-167 23-160 (775)
222 KOG0299 U3 snoRNP-associated p 90.9 13 0.00029 34.3 18.4 50 87-141 307-357 (479)
223 PF06739 SBBP: Beta-propeller 90.8 0.25 5.5E-06 29.3 2.4 21 156-176 14-34 (38)
224 KOG0643 Translation initiation 90.3 11 0.00025 32.6 16.2 141 36-177 13-170 (327)
225 PF00400 WD40: WD domain, G-be 89.8 1.8 3.8E-05 24.9 5.7 34 104-138 6-39 (39)
226 KOG4547 WD40 repeat-containing 89.3 20 0.00044 34.0 15.8 54 85-141 119-173 (541)
227 PF00400 WD40: WD domain, G-be 89.0 1.9 4.2E-05 24.7 5.4 36 25-61 4-39 (39)
228 PHA02713 hypothetical protein; 88.7 24 0.00051 34.1 19.4 84 43-129 302-406 (557)
229 KOG0649 WD40 repeat protein [G 88.7 14 0.00031 31.6 16.2 102 40-143 17-147 (325)
230 KOG4441 Proteins containing BT 88.2 26 0.00056 33.9 16.1 145 37-188 326-498 (571)
231 KOG0284 Polyadenylation factor 87.8 2.4 5.1E-05 38.6 7.3 116 24-140 171-294 (464)
232 KOG0268 Sof1-like rRNA process 87.4 22 0.00048 32.1 13.8 147 24-177 101-252 (433)
233 TIGR02276 beta_rpt_yvtn 40-res 87.2 3.3 7.1E-05 24.2 5.7 31 88-118 12-42 (42)
234 PF10647 Gmad1: Lipoprotein Lp 86.9 19 0.0004 30.9 15.6 80 90-176 2-87 (253)
235 KOG1034 Transcriptional repres 86.9 9.6 0.00021 33.9 10.3 141 36-177 184-376 (385)
236 KOG2111 Uncharacterized conser 86.9 22 0.00047 31.5 15.1 92 83-177 152-249 (346)
237 KOG0306 WD40-repeat-containing 86.7 35 0.00076 33.8 18.8 145 20-177 402-573 (888)
238 KOG0307 Vesicle coat complex C 86.5 4 8.7E-05 41.5 8.7 158 35-199 118-295 (1049)
239 KOG2314 Translation initiation 86.4 4.8 0.0001 38.2 8.7 102 89-194 471-578 (698)
240 KOG1408 WD40 repeat protein [F 86.4 1.1 2.4E-05 43.5 4.7 102 90-199 104-206 (1080)
241 PF06739 SBBP: Beta-propeller 86.3 1.9 4.1E-05 25.5 4.1 22 34-55 13-34 (38)
242 KOG0265 U5 snRNP-specific prot 86.3 15 0.00033 32.3 11.0 79 111-198 49-130 (338)
243 KOG0305 Anaphase promoting com 86.3 30 0.00065 32.7 13.9 136 34-174 302-451 (484)
244 KOG2315 Predicted translation 85.8 27 0.00059 33.2 13.2 111 28-141 265-391 (566)
245 PF07494 Reg_prop: Two compone 85.3 0.96 2.1E-05 23.7 2.2 17 157-173 7-23 (24)
246 KOG0305 Anaphase promoting com 85.1 35 0.00075 32.3 18.3 107 34-141 218-332 (484)
247 KOG4441 Proteins containing BT 85.0 22 0.00047 34.5 12.9 138 44-187 380-544 (571)
248 KOG0296 Angio-associated migra 84.2 32 0.00069 31.1 20.3 162 24-197 56-229 (399)
249 KOG2048 WD40 repeat protein [G 84.1 43 0.00094 32.6 17.8 115 24-141 60-185 (691)
250 PF00058 Ldl_recept_b: Low-den 84.0 5.7 0.00012 23.8 5.6 33 87-119 8-42 (42)
251 KOG0918 Selenium-binding prote 83.7 26 0.00055 32.2 11.6 31 112-142 314-344 (476)
252 KOG4378 Nuclear protein COP1 [ 83.6 21 0.00047 33.6 11.4 104 35-142 166-282 (673)
253 PRK13616 lipoprotein LpqB; Pro 83.6 46 0.00099 32.4 14.7 78 89-173 328-416 (591)
254 PF14517 Tachylectin: Tachylec 83.2 13 0.00027 31.5 9.1 139 27-173 28-196 (229)
255 KOG1445 Tumor-specific antigen 83.1 4.1 8.8E-05 39.3 6.7 77 91-172 701-782 (1012)
256 KOG0290 Conserved WD40 repeat- 82.4 34 0.00074 30.1 12.9 106 34-141 197-319 (364)
257 PF14583 Pectate_lyase22: Olig 81.3 44 0.00095 30.6 20.0 117 25-142 72-226 (386)
258 COG1520 FOG: WD40-like repeat 81.2 29 0.00062 31.3 11.6 71 117-199 65-140 (370)
259 TIGR02608 delta_60_rpt delta-6 80.8 3.6 7.8E-05 26.5 4.0 30 36-65 3-39 (55)
260 PF07676 PD40: WD40-like Beta 80.8 5.3 0.00012 23.1 4.6 20 112-131 11-30 (39)
261 PHA02713 hypothetical protein; 80.6 42 0.0009 32.4 13.0 77 90-173 432-520 (557)
262 PF15492 Nbas_N: Neuroblastoma 80.5 15 0.00032 32.0 8.7 32 109-141 43-74 (282)
263 KOG1538 Uncharacterized conser 80.5 62 0.0013 31.9 17.7 75 114-198 181-261 (1081)
264 COG4247 Phy 3-phytase (myo-ino 80.4 23 0.0005 30.6 9.7 40 22-63 195-234 (364)
265 PF02897 Peptidase_S9_N: Proly 80.4 46 0.001 30.3 20.1 100 73-175 131-248 (414)
266 KOG0308 Conserved WD40 repeat- 80.1 27 0.00058 33.9 11.0 107 34-141 118-244 (735)
267 KOG0281 Beta-TrCP (transducin 79.8 46 0.001 30.0 12.2 81 88-177 297-381 (499)
268 KOG4328 WD40 protein [Function 79.6 53 0.0012 30.6 15.5 106 35-140 236-353 (498)
269 KOG4227 WD40 repeat protein [G 79.5 50 0.0011 30.2 12.4 152 23-177 95-267 (609)
270 PF13570 PQQ_3: PQQ-like domai 79.4 8 0.00017 22.6 5.0 40 224-268 1-40 (40)
271 KOG0268 Sof1-like rRNA process 78.5 2.4 5.1E-05 38.1 3.4 87 86-175 206-293 (433)
272 KOG0322 G-protein beta subunit 78.3 8.5 0.00018 33.3 6.5 49 88-139 273-322 (323)
273 KOG0771 Prolactin regulatory e 78.0 35 0.00077 31.1 10.6 61 108-171 280-341 (398)
274 KOG0273 Beta-transducin family 77.9 61 0.0013 30.3 21.5 103 36-140 279-389 (524)
275 KOG0319 WD40-repeat-containing 77.4 78 0.0017 31.3 18.8 132 83-231 382-524 (775)
276 COG1520 FOG: WD40-like repeat 77.2 55 0.0012 29.4 14.8 52 87-140 75-129 (370)
277 PF14517 Tachylectin: Tachylec 76.7 12 0.00026 31.7 7.0 110 26-140 73-206 (229)
278 cd00216 PQQ_DH Dehydrogenases 76.4 70 0.0015 30.2 24.5 52 215-268 366-425 (488)
279 KOG4649 PQQ (pyrrolo-quinoline 76.2 52 0.0011 28.6 19.9 127 40-176 100-250 (354)
280 KOG0310 Conserved WD40 repeat- 76.2 69 0.0015 30.0 19.1 150 37-199 114-279 (487)
281 PF09826 Beta_propel: Beta pro 75.9 76 0.0017 30.4 15.9 101 133-267 249-355 (521)
282 KOG2315 Predicted translation 74.9 80 0.0017 30.2 20.5 121 89-231 250-373 (566)
283 KOG0771 Prolactin regulatory e 74.7 69 0.0015 29.3 12.8 52 88-141 164-216 (398)
284 KOG1272 WD40-repeat-containing 74.4 22 0.00048 33.1 8.5 113 27-142 124-241 (545)
285 TIGR03075 PQQ_enz_alc_DH PQQ-d 73.6 74 0.0016 30.5 12.4 125 36-174 389-523 (527)
286 KOG1272 WD40-repeat-containing 73.3 17 0.00036 33.9 7.4 87 83-176 266-355 (545)
287 KOG0302 Ribosome Assembly prot 72.4 78 0.0017 28.9 16.0 58 84-141 228-289 (440)
288 PHA03098 kelch-like protein; P 72.2 91 0.002 29.6 14.3 97 43-141 341-465 (534)
289 KOG1963 WD40 repeat protein [G 71.8 1.1E+02 0.0025 30.6 14.3 127 36-167 208-358 (792)
290 KOG0294 WD40 repeat-containing 71.6 74 0.0016 28.3 16.6 148 16-175 56-229 (362)
291 KOG0647 mRNA export protein (c 71.6 73 0.0016 28.2 12.6 67 113-180 31-99 (347)
292 KOG1538 Uncharacterized conser 71.6 1.1E+02 0.0024 30.3 19.7 139 111-265 134-291 (1081)
293 KOG1517 Guanine nucleotide bin 70.9 49 0.0011 34.3 10.5 147 24-172 1199-1369(1387)
294 KOG0290 Conserved WD40 repeat- 70.8 53 0.0012 28.9 9.5 55 87-141 172-228 (364)
295 KOG0301 Phospholipase A2-activ 70.3 1.1E+02 0.0025 30.0 16.1 105 84-200 155-259 (745)
296 KOG1408 WD40 repeat protein [F 69.3 52 0.0011 32.6 10.0 102 35-140 598-713 (1080)
297 KOG0307 Vesicle coat complex C 68.7 21 0.00045 36.7 7.5 143 35-179 66-233 (1049)
298 KOG1523 Actin-related protein 68.5 54 0.0012 29.2 9.2 108 36-176 13-122 (361)
299 TIGR03075 PQQ_enz_alc_DH PQQ-d 68.3 1.1E+02 0.0025 29.2 20.9 50 215-268 441-491 (527)
300 KOG1445 Tumor-specific antigen 68.3 51 0.0011 32.2 9.6 110 31-140 718-844 (1012)
301 KOG0322 G-protein beta subunit 67.7 6.9 0.00015 33.8 3.6 60 111-173 253-312 (323)
302 KOG4283 Transcription-coupled 67.2 87 0.0019 27.8 10.1 31 110-141 247-277 (397)
303 KOG0308 Conserved WD40 repeat- 67.2 60 0.0013 31.7 9.9 109 31-140 211-327 (735)
304 KOG0918 Selenium-binding prote 66.8 1.1E+02 0.0023 28.3 11.4 19 111-129 390-408 (476)
305 KOG1310 WD40 repeat protein [G 66.7 70 0.0015 30.7 10.0 107 35-141 52-179 (758)
306 PHA03098 kelch-like protein; P 66.4 1.2E+02 0.0026 28.8 19.4 98 41-141 291-415 (534)
307 KOG0316 Conserved WD40 repeat- 66.2 85 0.0018 26.9 9.8 107 33-142 101-215 (307)
308 KOG2321 WD40 repeat protein [G 65.5 1.3E+02 0.0029 29.0 13.7 56 85-141 150-206 (703)
309 KOG0264 Nucleosome remodeling 64.8 49 0.0011 30.5 8.6 104 35-140 229-347 (422)
310 KOG1188 WD40 repeat protein [G 64.3 1.1E+02 0.0024 27.5 12.9 86 87-173 47-136 (376)
311 KOG1009 Chromatin assembly com 63.4 23 0.0005 32.3 6.2 57 88-145 319-377 (434)
312 PHA02790 Kelch-like protein; P 63.1 1.4E+02 0.0029 28.2 18.6 95 43-140 270-384 (480)
313 PF11768 DUF3312: Protein of u 62.8 45 0.00098 31.9 8.2 67 111-187 261-327 (545)
314 KOG0295 WD40 repeat-containing 62.5 1.2E+02 0.0027 27.5 15.0 135 35-177 195-357 (406)
315 COG4246 Uncharacterized protei 62.3 52 0.0011 28.6 7.8 28 112-141 137-164 (340)
316 PF12894 Apc4_WD40: Anaphase-p 61.7 36 0.00077 21.0 5.3 31 35-65 13-43 (47)
317 KOG4640 Anaphase-promoting com 60.9 21 0.00045 34.5 5.7 42 22-63 51-92 (665)
318 COG5276 Uncharacterized conser 60.6 1.2E+02 0.0027 26.9 17.9 80 110-198 129-212 (370)
319 KOG2048 WD40 repeat protein [G 59.1 1.9E+02 0.004 28.5 19.1 138 35-173 27-174 (691)
320 PF14870 PSII_BNR: Photosynthe 58.9 1.3E+02 0.0028 26.6 19.1 82 89-175 123-207 (302)
321 PHA02790 Kelch-like protein; P 58.4 1.6E+02 0.0036 27.6 14.5 122 42-173 316-454 (480)
322 PF08553 VID27: VID27 cytoplas 57.9 52 0.0011 33.2 8.1 91 47-139 544-646 (794)
323 PF14269 Arylsulfotran_2: Aryl 57.5 1.4E+02 0.0029 26.4 19.0 31 110-141 144-174 (299)
324 PF00930 DPPIV_N: Dipeptidyl p 57.4 1.1E+02 0.0025 27.2 9.9 40 89-128 306-346 (353)
325 KOG0313 Microtubule binding pr 56.9 1.6E+02 0.0034 27.0 17.1 135 34-171 194-363 (423)
326 COG3292 Predicted periplasmic 56.7 39 0.00084 32.5 6.6 37 157-200 167-204 (671)
327 KOG0303 Actin-binding protein 56.4 1.7E+02 0.0036 27.1 14.6 85 85-175 149-237 (472)
328 PF08553 VID27: VID27 cytoplas 55.3 2.4E+02 0.0052 28.6 13.2 97 87-192 501-609 (794)
329 KOG0647 mRNA export protein (c 55.1 1.5E+02 0.0033 26.3 15.6 117 24-141 18-146 (347)
330 KOG1063 RNA polymerase II elon 53.3 58 0.0013 32.0 7.3 28 112-140 575-602 (764)
331 KOG0276 Vesicle coat complex C 53.0 2.3E+02 0.0051 27.8 19.9 137 34-172 98-257 (794)
332 KOG1034 Transcriptional repres 52.2 91 0.002 28.0 7.8 87 88-176 113-203 (385)
333 KOG0267 Microtubule severing p 51.5 58 0.0013 32.2 7.0 111 18-133 138-262 (825)
334 PF05935 Arylsulfotrans: Aryls 49.6 2.3E+02 0.005 26.7 12.5 100 39-141 153-302 (477)
335 PRK10115 protease 2; Provision 49.5 2.8E+02 0.006 27.6 21.9 52 89-142 152-209 (686)
336 TIGR02171 Fb_sc_TIGR02171 Fibr 48.9 3.2E+02 0.0069 28.1 14.0 62 89-151 376-451 (912)
337 KOG0276 Vesicle coat complex C 47.3 2.9E+02 0.0063 27.2 14.8 104 35-142 15-129 (794)
338 KOG2114 Vacuolar assembly/sort 47.2 3.3E+02 0.0071 27.8 17.6 29 112-142 174-203 (933)
339 PRK14131 N-acetylneuraminic ac 46.8 2.2E+02 0.0048 25.7 15.7 39 90-129 106-147 (376)
340 KOG3567 Peptidylglycine alpha- 46.1 25 0.00054 32.8 3.6 52 89-141 444-497 (501)
341 smart00320 WD40 WD40 repeats. 45.9 42 0.0009 17.1 3.7 27 34-60 13-39 (40)
342 KOG2395 Protein involved in va 45.1 2.6E+02 0.0056 27.0 10.0 101 85-191 351-461 (644)
343 KOG0640 mRNA cleavage stimulat 44.5 2.3E+02 0.0051 25.3 12.2 136 35-176 263-418 (430)
344 KOG1332 Vesicle coat complex C 44.3 1.5E+02 0.0032 25.7 7.6 105 36-141 14-135 (299)
345 COG3292 Predicted periplasmic 44.0 3.2E+02 0.0069 26.7 15.4 82 88-175 352-439 (671)
346 PF15390 DUF4613: Domain of un 43.3 1.6E+02 0.0034 28.8 8.4 65 106-171 335-401 (671)
347 KOG3881 Uncharacterized conser 43.2 2.7E+02 0.0058 25.6 16.3 62 111-176 204-270 (412)
348 KOG0281 Beta-TrCP (transducin 43.2 2.6E+02 0.0056 25.4 13.0 160 25-197 187-357 (499)
349 KOG1036 Mitotic spindle checkp 43.1 2.4E+02 0.0052 25.0 12.0 100 37-141 58-164 (323)
350 PF15416 DUF4623: Domain of un 42.7 2.6E+02 0.0056 25.3 9.9 57 120-176 142-204 (442)
351 KOG0302 Ribosome Assembly prot 42.4 2.7E+02 0.0059 25.5 10.4 106 34-140 258-378 (440)
352 PF14339 DUF4394: Domain of un 42.1 2.2E+02 0.0047 24.3 11.4 112 26-137 16-160 (236)
353 KOG1523 Actin-related protein 41.8 2.6E+02 0.0056 25.1 12.8 137 35-175 57-229 (361)
354 PF13964 Kelch_6: Kelch motif 41.2 61 0.0013 19.6 3.9 24 244-267 7-36 (50)
355 KOG0313 Microtubule binding pr 40.1 3E+02 0.0065 25.3 14.8 103 35-141 262-377 (423)
356 KOG0641 WD40 repeat protein [G 38.2 2.5E+02 0.0055 23.9 18.5 28 112-140 92-119 (350)
357 PF10313 DUF2415: Uncharacteri 37.3 90 0.002 19.0 4.0 26 114-140 5-33 (43)
358 KOG0650 WD40 repeat nucleolar 37.2 4.1E+02 0.0089 26.0 17.1 70 104-175 516-588 (733)
359 COG4590 ABC-type uncharacteriz 36.4 3.8E+02 0.0083 25.5 12.0 29 113-143 224-252 (733)
360 TIGR03074 PQQ_membr_DH membran 36.1 2.8E+02 0.0061 28.0 9.5 95 165-268 194-345 (764)
361 KOG0285 Pleiotropic regulator 36.0 3.4E+02 0.0075 24.8 19.8 140 33-175 193-340 (460)
362 COG4222 Uncharacterized protei 35.8 3.6E+02 0.0077 24.9 9.8 41 19-59 54-94 (391)
363 KOG3621 WD40 repeat-containing 34.4 59 0.0013 31.9 4.3 88 88-176 53-147 (726)
364 PF12275 DUF3616: Protein of u 34.4 1.4E+02 0.003 26.9 6.4 63 112-176 2-79 (330)
365 PF07202 Tcp10_C: T-complex pr 33.6 2.6E+02 0.0057 22.7 16.4 25 41-65 23-47 (179)
366 TIGR02171 Fb_sc_TIGR02171 Fibr 33.3 2.9E+02 0.0064 28.4 9.0 54 88-141 327-386 (912)
367 PLN00033 photosystem II stabil 33.1 3.9E+02 0.0085 24.6 18.4 60 113-176 242-302 (398)
368 KOG1007 WD repeat protein TSSC 32.9 2.1E+02 0.0046 25.3 7.0 116 25-141 115-246 (370)
369 PF15492 Nbas_N: Neuroblastoma 32.6 3.4E+02 0.0074 23.8 19.3 41 26-66 34-76 (282)
370 KOG0277 Peroxisomal targeting 31.5 3.5E+02 0.0076 23.6 17.5 114 27-141 3-136 (311)
371 PF05567 Neisseria_PilC: Neiss 31.2 98 0.0021 27.8 5.0 54 88-142 179-241 (335)
372 KOG2321 WD40 repeat protein [G 31.2 5.1E+02 0.011 25.3 15.8 104 37-141 137-259 (703)
373 KOG4497 Uncharacterized conser 30.7 4.1E+02 0.0089 24.1 9.4 49 114-167 53-104 (447)
374 TIGR03547 muta_rot_YjhT mutatr 30.7 3.8E+02 0.0081 23.6 14.2 39 90-129 85-126 (346)
375 KOG0321 WD40 repeat-containing 30.2 3.2E+02 0.007 26.8 8.3 28 37-64 275-302 (720)
376 PF14339 DUF4394: Domain of un 29.6 1.9E+02 0.0041 24.7 6.1 73 113-191 30-106 (236)
377 KOG0267 Microtubule severing p 29.6 1.3E+02 0.0028 29.9 5.6 29 35-63 72-100 (825)
378 TIGR03548 mutarot_permut cycli 29.4 3.8E+02 0.0083 23.3 14.6 143 25-170 102-308 (323)
379 KOG1063 RNA polymerase II elon 29.2 5.9E+02 0.013 25.4 15.0 57 113-175 320-382 (764)
380 KOG4547 WD40 repeat-containing 29.0 5.3E+02 0.012 24.8 17.2 85 85-172 75-162 (541)
381 PF10584 Proteasome_A_N: Prote 28.8 12 0.00026 19.5 -0.7 9 116-125 7-15 (23)
382 KOG1645 RING-finger-containing 28.6 2.5E+02 0.0055 26.0 7.0 79 92-175 175-258 (463)
383 TIGR03803 Gloeo_Verruco Gloeo_ 28.5 92 0.002 17.8 2.9 12 54-65 16-27 (34)
384 PRK10115 protease 2; Provision 28.1 1.8E+02 0.0038 29.0 6.6 58 112-173 129-191 (686)
385 KOG1215 Low-density lipoprotei 28.1 6.6E+02 0.014 25.7 13.4 84 88-175 457-544 (877)
386 PF01011 PQQ: PQQ enzyme repea 28.0 1.2E+02 0.0027 17.2 3.7 18 123-141 2-19 (38)
387 PF08309 LVIVD: LVIVD repeat; 27.7 1.4E+02 0.0031 17.8 4.6 25 242-267 5-29 (42)
388 KOG0650 WD40 repeat nucleolar 27.5 5.1E+02 0.011 25.4 9.0 27 239-266 608-636 (733)
389 smart00564 PQQ beta-propeller 27.4 97 0.0021 16.6 2.9 13 89-101 15-27 (33)
390 KOG2111 Uncharacterized conser 27.3 4.6E+02 0.0099 23.5 19.6 84 88-177 73-158 (346)
391 PF11725 AvrE: Pathogenicity f 27.0 9.2E+02 0.02 26.9 13.4 98 36-140 365-468 (1774)
392 KOG0270 WD40 repeat-containing 26.7 5.3E+02 0.012 24.1 14.4 138 35-175 288-439 (463)
393 PF15390 DUF4613: Domain of un 26.7 3.1E+02 0.0067 26.9 7.5 44 95-138 141-184 (671)
394 KOG1898 Splicing factor 3b, su 26.2 8E+02 0.017 25.9 12.0 111 24-138 232-362 (1205)
395 PF14870 PSII_BNR: Photosynthe 26.2 4.6E+02 0.01 23.2 19.4 141 35-192 105-264 (302)
396 KOG0321 WD40 repeat-containing 25.6 4.2E+02 0.009 26.1 8.1 94 44-140 63-175 (720)
397 PF02191 OLF: Olfactomedin-lik 25.5 4.3E+02 0.0093 22.6 17.4 142 24-170 61-235 (250)
398 KOG0269 WD40 repeat-containing 25.2 7.2E+02 0.016 25.1 12.8 126 35-164 178-319 (839)
399 PF02439 Adeno_E3_CR2: Adenovi 24.3 78 0.0017 18.7 2.0 17 2-18 3-19 (38)
400 PF12657 TFIIIC_delta: Transcr 23.6 1.2E+02 0.0026 24.1 3.9 28 110-140 5-32 (173)
401 KOG2395 Protein involved in va 23.1 3.1E+02 0.0068 26.4 6.7 49 89-139 450-499 (644)
402 PF04762 IKI3: IKI3 family; I 23.0 8.7E+02 0.019 25.3 25.0 29 35-63 122-150 (928)
403 COG4993 Gcd Glucose dehydrogen 22.4 5.5E+02 0.012 25.5 8.3 20 121-141 214-233 (773)
404 COG4590 ABC-type uncharacteriz 22.2 5.3E+02 0.011 24.6 7.9 30 110-141 358-387 (733)
405 PTZ00486 apyrase Superfamily; 22.0 3.2E+02 0.007 24.7 6.4 48 214-261 134-186 (352)
406 PLN00115 pollen allergen group 21.9 3.5E+02 0.0076 20.3 5.8 43 1-43 1-43 (118)
407 PRK13684 Ycf48-like protein; P 21.9 5.7E+02 0.012 22.7 23.2 45 25-70 37-81 (334)
408 PRK14131 N-acetylneuraminic ac 21.4 6E+02 0.013 22.8 12.6 39 90-129 189-229 (376)
409 KOG1215 Low-density lipoprotei 20.8 9.1E+02 0.02 24.7 19.7 145 29-176 432-589 (877)
410 PF14977 FAM194: FAM194 protei 20.3 5.1E+02 0.011 21.6 10.8 91 41-140 10-104 (208)
411 KOG0974 WD-repeat protein WDR6 20.2 9.9E+02 0.022 24.9 13.7 83 87-172 152-235 (967)
412 KOG2041 WD40 repeat protein [G 20.1 9.2E+02 0.02 24.5 15.4 19 244-262 324-342 (1189)
No 1
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=100.00 E-value=5.1e-32 Score=236.58 Aligned_cols=233 Identities=38% Similarity=0.642 Sum_probs=196.2
Q ss_pred CCCcceEEECCCC-CEEEEEeCCCeEEEEeCCCCeEEEEEEc--------------C--------------CCCCeeEEE
Q 024436 33 AIGPESLAFDALG-EGPYTGVSDGRIIKWHQDQRRWLHFART--------------S--------------PNRNHISVI 83 (268)
Q Consensus 33 ~~~P~gia~~~dG-~~l~~~~~~g~I~~~~~~g~~~~~~~~~--------------~--------------~~~~~~~~~ 83 (268)
...|-||+++..| + +|+...---++.++++|+..+..+.. . ..++++.++
T Consensus 114 CGRPLGl~f~~~ggd-L~VaDAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~a~ 192 (376)
T KOG1520|consen 114 CGRPLGIRFDKKGGD-LYVADAYLGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVFAA 192 (376)
T ss_pred cCCcceEEeccCCCe-EEEEecceeeEEECCCCCcceeccccccCeeeeecCceeEcCCCeEEEeccccccchhheEEee
Confidence 4589999999998 6 55544555667777776532211110 0 113477788
Q ss_pred eecCCcceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEe-CCCCCCceEE
Q 024436 84 LSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKR 162 (268)
Q Consensus 84 ~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~-l~g~Pdgia~ 162 (268)
+++.++||+++||+.|+..+++.+++.+|||+++|||++++.++|+...||.+|.+.+.+.|+.++|++ +||+||||..
T Consensus 193 l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~k~gt~EvFa~~LPG~PDNIR~ 272 (376)
T KOG1520|consen 193 LEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYWIKGPKAGTSEVFAEGLPGYPDNIRR 272 (376)
T ss_pred ecCCCccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEeeccceeeeeEecCCccCchhhHhhcCCCCCcceeE
Confidence 899999999999999888899999999999999999999999999999999999999999999999998 9999999999
Q ss_pred cCCCCEEEEEecCCCcceeeeEeeCccceeeeeccccceeeeeeccccCCCcEEEEEECCCCCEEEEEEcCCCCceeceE
Q 024436 163 SPRGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSIS 242 (268)
Q Consensus 163 d~dG~l~va~~~~~~~~~~~v~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~g~~~~~~s 242 (268)
+++|++||+....++.+.+++..+|..|+++.+++.++.-...+.....|+ ..+.+++.+|+++++++|++|+.+..++
T Consensus 273 ~~~G~fWVal~~~~~~~~~~~~~~p~vr~~~~~~~~~~~~~~~~~~~~~p~-~~V~~~d~~G~il~~lhD~~g~~~~~~s 351 (376)
T KOG1520|consen 273 DSTGHFWVALHSKRSTLWRLLMKYPWVRKFIAKLPKYMELLYFLNNGGKPH-SAVKLSDETGKILESLHDKEGKVITLVS 351 (376)
T ss_pred CCCCCEEEEEecccchHHHhhhcChHHHHHHHhhccchhhhhhhhccCCCc-eEEEEecCCCcEEEEEecCCCCceEEEE
Confidence 999999999999888888889999999999988877654433344444565 6688888999999999999999999999
Q ss_pred EEEEeCCEEEEeeCCCCeEEEEeCC
Q 024436 243 EVEEKDGNLWIGSVNMPYAGLYNYS 267 (268)
Q Consensus 243 ~~~~~~g~Lyv~s~~~~~v~~~~~~ 267 (268)
.+.+++|+||+||..+++++++|+.
T Consensus 352 ev~E~dg~LyiGS~~~p~i~~lkl~ 376 (376)
T KOG1520|consen 352 EVGEHDGHLYIGSLFNPYIARLKLP 376 (376)
T ss_pred EEeecCCeEEEcccCcceeEEEecC
Confidence 9999999999999999999999873
No 2
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.86 E-value=5.5e-20 Score=157.48 Aligned_cols=165 Identities=25% Similarity=0.436 Sum_probs=113.5
Q ss_pred CEEEEecCCCCCcceEEEC-CCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcC--C-------------CC-CeeEEEeec
Q 024436 24 GVVQYQIEGAIGPESLAFD-ALGEGPYTGVSDGRIIKWHQDQRRWLHFARTS--P-------------NR-NHISVILSG 86 (268)
Q Consensus 24 ~~~~i~~~~~~~P~gia~~-~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~--~-------------~~-~~~~~~~~~ 86 (268)
..+.+..++ |.|++++ ++|.++++. .. .+..++++...++.+.... . ++ -|+.+....
T Consensus 33 ~~~~~~~~~---~~G~~~~~~~g~l~v~~-~~-~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~ 107 (246)
T PF08450_consen 33 EVEVIDLPG---PNGMAFDRPDGRLYVAD-SG-GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGG 107 (246)
T ss_dssp EEEEEESSS---EEEEEEECTTSEEEEEE-TT-CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCB
T ss_pred eEEEEecCC---CceEEEEccCCEEEEEE-cC-ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCC
Confidence 444555664 9999999 787755554 33 3344476554445444331 1 11 144433211
Q ss_pred C--Cc--ceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccC--CCCCceeEEEeCC---CCC
Q 024436 87 D--KT--GRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT--SKAGTIEIVAQLP---GFP 157 (268)
Q Consensus 87 ~--~~--g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~--~~~g~~~~~~~l~---g~P 157 (268)
. .. |+||+++++ ++++.+.+++..||||+|+|||+.|||+++.+++|++|+++. ..+...+++.+++ +.|
T Consensus 108 ~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~p 186 (246)
T PF08450_consen 108 GASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYP 186 (246)
T ss_dssp CTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEE
T ss_pred ccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCC
Confidence 1 22 889999999 899999999999999999999999999999999999999973 2345566776643 459
Q ss_pred CceEEcCCCCEEEEEecCCCcceeeeEeeCccceeeeecccc
Q 024436 158 DNIKRSPRGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPID 199 (268)
Q Consensus 158 dgia~d~dG~l~va~~~~~~~~~~~v~~~~~~g~~l~~i~~~ 199 (268)
||+++|++|+||||.+..+. |.++.+.|+++..+++|
T Consensus 187 DG~~vD~~G~l~va~~~~~~-----I~~~~p~G~~~~~i~~p 223 (246)
T PF08450_consen 187 DGLAVDSDGNLWVADWGGGR-----IVVFDPDGKLLREIELP 223 (246)
T ss_dssp EEEEEBTTS-EEEEEETTTE-----EEEEETTSCEEEEEE-S
T ss_pred CcceEcCCCCEEEEEcCCCE-----EEEECCCccEEEEEcCC
Confidence 99999999999999997763 55555555555555554
No 3
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=99.86 E-value=7.4e-20 Score=160.57 Aligned_cols=207 Identities=23% Similarity=0.343 Sum_probs=136.9
Q ss_pred CCCcceEEECCCCC-EEEEEeCCCeEEEEeCC-CCeEEEEEE--------------------------------------
Q 024436 33 AIGPESLAFDALGE-GPYTGVSDGRIIKWHQD-QRRWLHFAR-------------------------------------- 72 (268)
Q Consensus 33 ~~~P~gia~~~dG~-~l~~~~~~g~I~~~~~~-g~~~~~~~~-------------------------------------- 72 (268)
..-.||...+++.. +++++...++|+++++. |+ ...+..
T Consensus 24 ~~~gEgP~w~~~~~~L~w~DI~~~~i~r~~~~~g~-~~~~~~p~~~~~~~~~d~~g~Lv~~~~g~~~~~~~~~~~~t~~~ 102 (307)
T COG3386 24 ATLGEGPVWDPDRGALLWVDILGGRIHRLDPETGK-KRVFPSPGGFSSGALIDAGGRLIACEHGVRLLDPDTGGKITLLA 102 (307)
T ss_pred cccccCccCcCCCCEEEEEeCCCCeEEEecCCcCc-eEEEECCCCcccceeecCCCeEEEEccccEEEeccCCceeEEec
Confidence 45688888999866 88899999999999885 43 122110
Q ss_pred -cCCC----C----------C-eeEEEe-------ecCCcceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEec
Q 024436 73 -TSPN----R----------N-HISVIL-------SGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAET 129 (268)
Q Consensus 73 -~~~~----~----------~-~~~~~~-------~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~ 129 (268)
...+ + . |+.+.. +....|+||++||.++..+.+.+.+..||||||||||++||++|+
T Consensus 103 ~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT 182 (307)
T COG3386 103 EPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADT 182 (307)
T ss_pred cccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeC
Confidence 0000 0 0 343333 224678999999974444444555999999999999999999999
Q ss_pred CCcEEEEEEccC--CCCCceeEEE--e-CCCCCCceEEcCCCCEEE-EEecCCCcceeeeEeeCccceeeeeccccceee
Q 024436 130 TSCRILRYWLKT--SKAGTIEIVA--Q-LPGFPDNIKRSPRGGFWV-GIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKI 203 (268)
Q Consensus 130 ~~~~I~~~~~~~--~~~g~~~~~~--~-l~g~Pdgia~d~dG~l~v-a~~~~~~~~~~~v~~~~~~g~~l~~i~~~~~~~ 203 (268)
..++|++|+++. ........+. + .+|.|||+++|++|++|+ +.+++.. |.+|.++|+.+..+.+|...+
T Consensus 183 ~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~-----v~~~~pdG~l~~~i~lP~~~~ 257 (307)
T COG3386 183 PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGR-----VVRFNPDGKLLGEIKLPVKRP 257 (307)
T ss_pred CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCce-----EEEECCCCcEEEEEECCCCCC
Confidence 999999999872 2333333332 2 368999999999999995 4454433 888999999999999996555
Q ss_pred ee-eccccCCCcEEEEEECCCCCEEEEEEcCCCCceeceEEEEEeCCEEEEeeCCCC
Q 024436 204 HS-SLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVEEKDGNLWIGSVNMP 259 (268)
Q Consensus 204 ~~-~~~~~~~~~~~~~~~~~~G~~~~~~~~~~g~~~~~~s~~~~~~g~Lyv~s~~~~ 259 (268)
++ |+++ ++++.+.+.....+.. ...+ .....|.||......+
T Consensus 258 t~~~FgG------------~~~~~L~iTs~~~~~~-~~~~-~~~~~G~lf~~~~~~~ 300 (307)
T COG3386 258 TNPAFGG------------PDLNTLYITSARSGMS-RMLT-ADPLGGGLFSLRLEVK 300 (307)
T ss_pred ccceEeC------------CCcCEEEEEecCCCCC-cccc-ccccCceEEEEecccC
Confidence 54 3433 2234444443333322 2222 2335567776665544
No 4
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.68 E-value=1.1e-15 Score=125.64 Aligned_cols=142 Identities=15% Similarity=0.233 Sum_probs=109.7
Q ss_pred CcceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEc--cCCCCCceeEEEeC-------CCCCC
Q 024436 88 KTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWL--KTSKAGTIEIVAQL-------PGFPD 158 (268)
Q Consensus 88 ~~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~--~~~~~g~~~~~~~l-------~g~Pd 158 (268)
..|.+|++-++ ++++.+......+|||+|+.|.+.+|+.|+.+..|..|+. .++.+.+++++.++ +-.||
T Consensus 137 ~~g~Ly~~~~~-h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PD 215 (310)
T KOG4499|consen 137 IGGELYSWLAG-HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPD 215 (310)
T ss_pred cccEEEEeccC-CCceeeehhccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCC
Confidence 45778888887 8999999999999999999999999999999999976664 46666666666553 13799
Q ss_pred ceEEcCCCCEEEEEecCCCcceeeeEee-CccceeeeeccccceeeeeeccccCCCcEEEEEECCC-CCEEEEEEcCCC
Q 024436 159 NIKRSPRGGFWVGIHSRRKGISKLVLSF-PWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQ-GNVLEILEEIGR 235 (268)
Q Consensus 159 gia~d~dG~l~va~~~~~~~~~~~v~~~-~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~~~~~~~~~g 235 (268)
|+++|.+|+||||+|.++. |+++ +.+||++..+..|..++++|+...++..-+++.-..+ -.++.+..+|++
T Consensus 216 Gm~ID~eG~L~Va~~ng~~-----V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~aa~~~dp~~~~~~p~a 289 (310)
T KOG4499|consen 216 GMTIDTEGNLYVATFNGGT-----VQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVTTAAKFDDPVRTNTDPNA 289 (310)
T ss_pred cceEccCCcEEEEEecCcE-----EEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEEehhcccCchhcccCCCC
Confidence 9999999999999999884 5554 6799999999999888887765545432344444444 345556666643
No 5
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.63 E-value=2.1e-13 Score=137.73 Aligned_cols=207 Identities=15% Similarity=0.172 Sum_probs=131.3
Q ss_pred CCCcceEEECCCCCE-EEEEeCCCeEEEEeCCCCeEEEEEEcCC----------------CCCe--------eEEEeecC
Q 024436 33 AIGPESLAFDALGEG-PYTGVSDGRIIKWHQDQRRWLHFARTSP----------------NRNH--------ISVILSGD 87 (268)
Q Consensus 33 ~~~P~gia~~~dG~~-l~~~~~~g~I~~~~~~g~~~~~~~~~~~----------------~~~~--------~~~~~~~~ 87 (268)
+..|.|++++++|+. |+++..+++|.+++..+..+..++..+. +.++ ...+.++.
T Consensus 623 f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~ 702 (1057)
T PLN02919 623 FNRPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA 702 (1057)
T ss_pred cCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC
Confidence 457999999999875 5556678999999987665555543210 0111 01223445
Q ss_pred CcceEEEEeCCCCeEEEee---------------cCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCC-----c-
Q 024436 88 KTGRLMKYDPATKQVTVLL---------------GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAG-----T- 146 (268)
Q Consensus 88 ~~g~v~~~d~~~~~~~~~~---------------~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g-----~- 146 (268)
.+++|+++|+.++.+..+. ..+..|+||+++|||++|||+++.+++|++|+++++... .
T Consensus 703 ~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~ 782 (1057)
T PLN02919 703 GQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDP 782 (1057)
T ss_pred CCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEeccc
Confidence 6778889998777665432 135679999999999999999999999999998743210 0
Q ss_pred -----eeEEEe--------CCCCCCceEEcCCCCEEEEEecCCCcceeeeEeeCccceeeeeccccceeeeeeccccCCC
Q 024436 147 -----IEIVAQ--------LPGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGN 213 (268)
Q Consensus 147 -----~~~~~~--------l~g~Pdgia~d~dG~l~va~~~~~~~~~~~v~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~ 213 (268)
...+.. .-..|.|+++|++|++||++..++. |.++...+..+..+.-. ...
T Consensus 783 ~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~r-----IrviD~~tg~v~tiaG~----------G~~- 846 (1057)
T PLN02919 783 TFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHK-----IKKLDPATKRVTTLAGT----------GKA- 846 (1057)
T ss_pred ccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCE-----EEEEECCCCeEEEEecc----------CCc-
Confidence 000000 0125999999999999999998874 66665433222211100 000
Q ss_pred cEEEEEECCCCCEEEEEEcCCCCceeceEEEE-EeCCEEEEeeCCCCeEEEEeCCC
Q 024436 214 GGMAMRISEQGNVLEILEEIGRKMWRSISEVE-EKDGNLWIGSVNMPYAGLYNYSS 268 (268)
Q Consensus 214 ~~~~~~~~~~G~~~~~~~~~~g~~~~~~s~~~-~~~g~Lyv~s~~~~~v~~~~~~~ 268 (268)
+ ..+|... . ..+..+.+++ ..+|+|||++..+++|.++++++
T Consensus 847 -G-----~~dG~~~------~-a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~ 889 (1057)
T PLN02919 847 -G-----FKDGKAL------K-AQLSEPAGLALGENGRLFVADTNNSLIRYLDLNK 889 (1057)
T ss_pred -C-----CCCCccc------c-cccCCceEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence 0 0123211 0 1134455554 45789999999999999998764
No 6
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.62 E-value=9.4e-14 Score=118.86 Aligned_cols=200 Identities=24% Similarity=0.351 Sum_probs=128.3
Q ss_pred cceEEECC-CCCEEEEEeCCCeEEEEeCCCCeEEEEEEcC--------CCCCeeEEEeecCCcceEEEEeCCCCeEEEee
Q 024436 36 PESLAFDA-LGEGPYTGVSDGRIIKWHQDQRRWLHFARTS--------PNRNHISVILSGDKTGRLMKYDPATKQVTVLL 106 (268)
Q Consensus 36 P~gia~~~-dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~--------~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~ 106 (268)
|||+++++ +|.+|+++...++|+++++++.....+.... ++.. .++.. .+.+..+|+++++++.+.
T Consensus 2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~~~G~~~~~~~g~---l~v~~--~~~~~~~d~~~g~~~~~~ 76 (246)
T PF08450_consen 2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPGPNGMAFDRPDGR---LYVAD--SGGIAVVDPDTGKVTVLA 76 (246)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSSEEEEEEECTTSE---EEEEE--TTCEEEEETTTTEEEEEE
T ss_pred CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCCCceEEEEccCCE---EEEEE--cCceEEEecCCCcEEEEe
Confidence 79999998 8999999999999999999887533322111 1111 11122 234455588888887765
Q ss_pred c------CCCCcceEEEccCCCEEEEEecCC--------cEEEEEEccCCCCCceeEEEe-CCCCCCceEEcCCCC-EEE
Q 024436 107 G------NLSFPNGVALSEDGNYILLAETTS--------CRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSPRGG-FWV 170 (268)
Q Consensus 107 ~------~~~~pnGia~spdg~~lyva~~~~--------~~I~~~~~~~~~~g~~~~~~~-l~g~Pdgia~d~dG~-l~v 170 (268)
. .+..||+++++|||+ ||++++.. ++|++++.++ +.....+ + ..|+||++++||+ ||+
T Consensus 77 ~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~~----~~~~~~~~~-~~pNGi~~s~dg~~lyv 150 (246)
T PF08450_consen 77 DLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPDG----KVTVVADGL-GFPNGIAFSPDGKTLYV 150 (246)
T ss_dssp EEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETTS----EEEEEEEEE-SSEEEEEEETTSSEEEE
T ss_pred eccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCCC----eEEEEecCc-ccccceEECCcchheee
Confidence 3 467899999999996 99999865 6799999873 2333333 4 4799999999996 888
Q ss_pred EEecCCCcceeeeEeeCcc--c------eeeeeccccc---eeee-----eeccccCCCcEEEEEECCCCCEEEEEEcCC
Q 024436 171 GIHSRRKGISKLVLSFPWI--G------NVLIKLPIDI---VKIH-----SSLVKLSGNGGMAMRISEQGNVLEILEEIG 234 (268)
Q Consensus 171 a~~~~~~~~~~~v~~~~~~--g------~~l~~i~~~~---~~~~-----~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~ 234 (268)
++...+ + |.+++.. + +.+..++... .... .++-..... +.+++++++|+++..+.-|
T Consensus 151 ~ds~~~-~----i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~-~~I~~~~p~G~~~~~i~~p- 223 (246)
T PF08450_consen 151 ADSFNG-R----IWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGG-GRIVVFDPDGKLLREIELP- 223 (246)
T ss_dssp EETTTT-E----EEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETT-TEEEEEETTSCEEEEEE-S-
T ss_pred cccccc-e----eEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCC-CEEEEECCCccEEEEEcCC-
Confidence 888776 4 4444431 2 2222232221 0000 001001112 5688999999999999876
Q ss_pred CCceeceEEEEE---eCCEEEEeeC
Q 024436 235 RKMWRSISEVEE---KDGNLWIGSV 256 (268)
Q Consensus 235 g~~~~~~s~~~~---~~g~Lyv~s~ 256 (268)
. +.+|.++. ..++|||++.
T Consensus 224 ~---~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 224 V---PRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp S---SSEEEEEEESTTSSEEEEEEB
T ss_pred C---CCEEEEEEECCCCCEEEEEeC
Confidence 2 35677766 3478999975
No 7
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=99.56 E-value=8.7e-15 Score=104.65 Aligned_cols=87 Identities=49% Similarity=0.831 Sum_probs=64.6
Q ss_pred ceEEECCC-CCEEEEEeCCCeEEEEeCCCCeEEEEEEcCCCCCeeEEEeecCCcceEEEEeCCCCeEEEeecCCCCcceE
Q 024436 37 ESLAFDAL-GEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGV 115 (268)
Q Consensus 37 ~gia~~~d-G~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGi 115 (268)
++++++++ |.+|+++... +++. +.++.++++..++|+++++||.|++.+++.+++.+||||
T Consensus 1 ndldv~~~~g~vYfTdsS~----~~~~--------------~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpNGV 62 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSS----RYDR--------------RDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPNGV 62 (89)
T ss_dssp -EEEE-TTT--EEEEES-S----S--T--------------TGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEEEE
T ss_pred CceeEecCCCEEEEEeCcc----ccCc--------------cceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccCeE
Confidence 46888888 8777765432 1111 223456678889999999999999999999999999999
Q ss_pred EEccCCCEEEEEecCCcEEEEEEccC
Q 024436 116 ALSEDGNYILLAETTSCRILRYWLKT 141 (268)
Q Consensus 116 a~spdg~~lyva~~~~~~I~~~~~~~ 141 (268)
++++|++.|+|+|+...||+||.++|
T Consensus 63 als~d~~~vlv~Et~~~Ri~rywl~G 88 (89)
T PF03088_consen 63 ALSPDESFVLVAETGRYRILRYWLKG 88 (89)
T ss_dssp EE-TTSSEEEEEEGGGTEEEEEESSS
T ss_pred EEcCCCCEEEEEeccCceEEEEEEeC
Confidence 99999999999999999999999886
No 8
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.45 E-value=3.8e-11 Score=121.52 Aligned_cols=147 Identities=17% Similarity=0.183 Sum_probs=104.2
Q ss_pred CCCcceEEECCC-CCEEEEEeCCCeEEEEeCCCCeEEEEEEcCCC-------------CCee--------EEEeecCCcc
Q 024436 33 AIGPESLAFDAL-GEGPYTGVSDGRIIKWHQDQRRWLHFARTSPN-------------RNHI--------SVILSGDKTG 90 (268)
Q Consensus 33 ~~~P~gia~~~d-G~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~~-------------~~~~--------~~~~~~~~~g 90 (268)
+..|.+++++++ |++|+++..+++|.+++.+|+....+...+.. +++. ..++.+..++
T Consensus 567 l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~ 646 (1057)
T PLN02919 567 LKFPGKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENH 646 (1057)
T ss_pred CCCCceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCc
Confidence 678999999985 77888888999999999998854333321110 1110 1234455667
Q ss_pred eEEEEeCCCCeEEEeec-----------------CCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEe-
Q 024436 91 RLMKYDPATKQVTVLLG-----------------NLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ- 152 (268)
Q Consensus 91 ~v~~~d~~~~~~~~~~~-----------------~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~- 152 (268)
+|.++|..++.++.+.. .+..|.+++++|+++.|||++..+++|++|+..++. ...+..
T Consensus 647 ~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~---v~~~~G~ 723 (1057)
T PLN02919 647 ALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV---TRVFSGD 723 (1057)
T ss_pred eEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe---EEEEecC
Confidence 88889988777776642 156799999999766899999999999999986532 111110
Q ss_pred --------------CCCCCCceEEcCCCC-EEEEEecCCCcceeeeEeeC
Q 024436 153 --------------LPGFPDNIKRSPRGG-FWVGIHSRRKGISKLVLSFP 187 (268)
Q Consensus 153 --------------l~g~Pdgia~d~dG~-l~va~~~~~~~~~~~v~~~~ 187 (268)
.-..|.||+++++|+ |||++..++. |.+++
T Consensus 724 G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~-----Irv~D 768 (1057)
T PLN02919 724 GYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSS-----IRALD 768 (1057)
T ss_pred CccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCe-----EEEEE
Confidence 013699999999987 9999998874 55554
No 9
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=99.41 E-value=9.5e-11 Score=98.91 Aligned_cols=230 Identities=17% Similarity=0.194 Sum_probs=148.1
Q ss_pred CEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcCCCCCee-------EEEeecCCcceEEEEe
Q 024436 24 GVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRNHI-------SVILSGDKTGRLMKYD 96 (268)
Q Consensus 24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~~~~~~-------~~~~~~~~~g~v~~~d 96 (268)
...+++++...+|+.++.++||.++|++...|.|-+++|.......+..-++.+++. ..++.+... .|.|+|
T Consensus 52 s~~~fpvp~G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~d 130 (353)
T COG4257 52 SSAEFPVPNGSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLD 130 (353)
T ss_pred ccceeccCCCCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEec
Confidence 788999999899999999999999999999999999998644344443222222211 122232333 899999
Q ss_pred CCCCeEEEeecCCCCc----ceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEe-CCCCCCceEEcCCCCEEEE
Q 024436 97 PATKQVTVLLGNLSFP----NGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSPRGGFWVG 171 (268)
Q Consensus 97 ~~~~~~~~~~~~~~~p----nGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~-l~g~Pdgia~d~dG~l~va 171 (268)
+++.+++++.-....+ |-..|+++|+ |+++... +---+.|+.. ...++|.. ..+.|.|||+.+||.+|++
T Consensus 131 pkt~evt~f~lp~~~a~~nlet~vfD~~G~-lWFt~q~-G~yGrLdPa~---~~i~vfpaPqG~gpyGi~atpdGsvwya 205 (353)
T COG4257 131 PKTLEVTRFPLPLEHADANLETAVFDPWGN-LWFTGQI-GAYGRLDPAR---NVISVFPAPQGGGPYGICATPDGSVWYA 205 (353)
T ss_pred CcccceEEeecccccCCCcccceeeCCCcc-EEEeecc-ccceecCccc---CceeeeccCCCCCCcceEECCCCcEEEE
Confidence 9989888764333333 4689999995 9988762 2112333321 23455532 3357999999999999999
Q ss_pred EecCCCcceeeeEe-eCccceeeeeccccce--e---------eeeeccccCCCcEEEEEECCCCCEEEEEEcCCCCcee
Q 024436 172 IHSRRKGISKLVLS-FPWIGNVLIKLPIDIV--K---------IHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWR 239 (268)
Q Consensus 172 ~~~~~~~~~~~v~~-~~~~g~~l~~i~~~~~--~---------~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~g~~~~ 239 (268)
....+- |.+ .+.++ .-..++.|.. . +-..+-..... +.+.+++|.-+....|.-|+-+. .
T Consensus 206 slagna-----iaridp~~~-~aev~p~P~~~~~gsRriwsdpig~~wittwg~-g~l~rfdPs~~sW~eypLPgs~a-r 277 (353)
T COG4257 206 SLAGNA-----IARIDPFAG-HAEVVPQPNALKAGSRRIWSDPIGRAWITTWGT-GSLHRFDPSVTSWIEYPLPGSKA-R 277 (353)
T ss_pred eccccc-----eEEcccccC-CcceecCCCcccccccccccCccCcEEEeccCC-ceeeEeCcccccceeeeCCCCCC-C
Confidence 877652 333 44555 3333443321 1 00111111222 56778888776677777664332 3
Q ss_pred ceEEEEEeCCEEEEeeCCCCeEEEEeCC
Q 024436 240 SISEVEEKDGNLWIGSVNMPYAGLYNYS 267 (268)
Q Consensus 240 ~~s~~~~~~g~Lyv~s~~~~~v~~~~~~ 267 (268)
.-+.-++..+++|+..+..+.|.++|-+
T Consensus 278 pys~rVD~~grVW~sea~agai~rfdpe 305 (353)
T COG4257 278 PYSMRVDRHGRVWLSEADAGAIGRFDPE 305 (353)
T ss_pred cceeeeccCCcEEeeccccCceeecCcc
Confidence 3344466779999999999999998754
No 10
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.40 E-value=1.9e-10 Score=103.47 Aligned_cols=150 Identities=21% Similarity=0.281 Sum_probs=92.2
Q ss_pred CEEEEecCCCCCcceEEECCCCCEEEEEe-CCCeEEEEe--CCCCeEEE--EE---EcC-----------------CCCC
Q 024436 24 GVVQYQIEGAIGPESLAFDALGEGPYTGV-SDGRIIKWH--QDQRRWLH--FA---RTS-----------------PNRN 78 (268)
Q Consensus 24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~-~~g~I~~~~--~~g~~~~~--~~---~~~-----------------~~~~ 78 (268)
.+..++.. ...|..++++|+|+.+++.+ ..|.|..++ .+|..-.. .. ..+ |++.
T Consensus 78 ~~~~~~~~-g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~ 156 (345)
T PF10282_consen 78 LLNSVPSG-GSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGR 156 (345)
T ss_dssp EEEEEEES-SSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSS
T ss_pred EeeeeccC-CCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCC
Confidence 34444433 35899999999999998876 578886654 45542111 11 111 1222
Q ss_pred eeEEEeecCCcceEEEEe--CCCCeEEE----eecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEE--
Q 024436 79 HISVILSGDKTGRLMKYD--PATKQVTV----LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIV-- 150 (268)
Q Consensus 79 ~~~~~~~~~~~g~v~~~d--~~~~~~~~----~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~-- 150 (268)
++. ..+....+|+.++ ..++++.. .......|..++|+|||+++||++..++.|.+|+++... +..+..
T Consensus 157 ~v~--v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~-g~~~~~~~ 233 (345)
T PF10282_consen 157 FVY--VPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSD-GSLTEIQT 233 (345)
T ss_dssp EEE--EEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTT-TEEEEEEE
T ss_pred EEE--EEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccC-CceeEEEE
Confidence 332 2334455555544 44333433 235567799999999999999999999999999998211 222222
Q ss_pred -EeCC----C--CCCceEEcCCCC-EEEEEecCCC
Q 024436 151 -AQLP----G--FPDNIKRSPRGG-FWVGIHSRRK 177 (268)
Q Consensus 151 -~~l~----g--~Pdgia~d~dG~-l~va~~~~~~ 177 (268)
..+| + .|.+|++++||+ |||+....+.
T Consensus 234 ~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~s 268 (345)
T PF10282_consen 234 ISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNS 268 (345)
T ss_dssp EESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTE
T ss_pred eeeccccccccCCceeEEEecCCCEEEEEeccCCE
Confidence 2232 1 478899999997 7888877663
No 11
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.37 E-value=4.9e-10 Score=99.87 Aligned_cols=139 Identities=14% Similarity=0.205 Sum_probs=86.4
Q ss_pred CcceEEECCCCCEEEEEe-CCCeEEEEeCC--CCeEEEEE-----------EcCCCCCeeEEEeecCCcceEEEEeCCC-
Q 024436 35 GPESLAFDALGEGPYTGV-SDGRIIKWHQD--QRRWLHFA-----------RTSPNRNHISVILSGDKTGRLMKYDPAT- 99 (268)
Q Consensus 35 ~P~gia~~~dG~~l~~~~-~~g~I~~~~~~--g~~~~~~~-----------~~~~~~~~~~~~~~~~~~g~v~~~d~~~- 99 (268)
.|.+++++|+|+.+|+.. .+++|..++.+ |....... ...+++.++. ......+.|..+|.++
T Consensus 81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~--v~~~~~~~v~v~d~~~~ 158 (330)
T PRK11028 81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLW--VPCLKEDRIRLFTLSDD 158 (330)
T ss_pred CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEE--EeeCCCCEEEEEEECCC
Confidence 799999999999888765 47877777543 42111111 1123333332 2334556666666643
Q ss_pred CeEEE------eecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeC---C------CCCCceEEcC
Q 024436 100 KQVTV------LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL---P------GFPDNIKRSP 164 (268)
Q Consensus 100 ~~~~~------~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l---~------g~Pdgia~d~ 164 (268)
+++.. -......|++++|+|||++|||++...+.|.+|+++.. .+..+.+..+ | ..|.+|+++|
T Consensus 159 g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p 237 (330)
T PRK11028 159 GHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDP-HGEIECVQTLDMMPADFSDTRWAADIHITP 237 (330)
T ss_pred CcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCC-CCCEEEEEEEecCCCcCCCCccceeEEECC
Confidence 33321 11234679999999999999999998999999999731 1122332222 1 1344689999
Q ss_pred CCC-EEEEEecCC
Q 024436 165 RGG-FWVGIHSRR 176 (268)
Q Consensus 165 dG~-l~va~~~~~ 176 (268)
+|+ +|+++...+
T Consensus 238 dg~~lyv~~~~~~ 250 (330)
T PRK11028 238 DGRHLYACDRTAS 250 (330)
T ss_pred CCCEEEEecCCCC
Confidence 997 788765544
No 12
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=99.37 E-value=1.4e-10 Score=97.88 Aligned_cols=226 Identities=18% Similarity=0.214 Sum_probs=150.9
Q ss_pred CEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcC--CCCC--------eeEEEeecCCcceEE
Q 024436 24 GVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTS--PNRN--------HISVILSGDKTGRLM 93 (268)
Q Consensus 24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~--~~~~--------~~~~~~~~~~~g~v~ 93 (268)
-+++++++....|++|.++|||..++++... .|.|+++....++.|.... ++.+ +...++++ ..|.--
T Consensus 94 ev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~-q~G~yG 171 (353)
T COG4257 94 EVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTG-QIGAYG 171 (353)
T ss_pred ceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeecccccCCCcccceeeCCCccEEEee-ccccce
Confidence 6889999988899999999999999987665 8999998654345553221 1111 11222222 233334
Q ss_pred EEeCCCCeEEEee-cCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEe---CCCCCCceEEcCCCCEE
Q 024436 94 KYDPATKQVTVLL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ---LPGFPDNIKRSPRGGFW 169 (268)
Q Consensus 94 ~~d~~~~~~~~~~-~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~---l~g~Pdgia~d~dG~l~ 169 (268)
++||.++.+++.. .....|+||+..|||. +|+++-..+-|-++|... +..+++.. +...-+.+-.|+.|++|
T Consensus 172 rLdPa~~~i~vfpaPqG~gpyGi~atpdGs-vwyaslagnaiaridp~~---~~aev~p~P~~~~~gsRriwsdpig~~w 247 (353)
T COG4257 172 RLDPARNVISVFPAPQGGGPYGICATPDGS-VWYASLAGNAIARIDPFA---GHAEVVPQPNALKAGSRRIWSDPIGRAW 247 (353)
T ss_pred ecCcccCceeeeccCCCCCCcceEECCCCc-EEEEeccccceEEccccc---CCcceecCCCcccccccccccCccCcEE
Confidence 7888876666553 3456799999999995 999999889999988754 23344432 22346778899999999
Q ss_pred EEEecCCCcceeeeEeeCccceeeeecccccee--eee--------eccccCCCcEEEEEECCCCCEEEEEEcCCCCcee
Q 024436 170 VGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVK--IHS--------SLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWR 239 (268)
Q Consensus 170 va~~~~~~~~~~~v~~~~~~g~~l~~i~~~~~~--~~~--------~~~~~~~~~~~~~~~~~~G~~~~~~~~~~g~~~~ 239 (268)
++.|.... +.+|.++-+.-.+.++|..+ ..+ ++-..... +.+.++|+.-....+|..+. .-.
T Consensus 248 ittwg~g~-----l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~sea~a-gai~rfdpeta~ftv~p~pr--~n~ 319 (353)
T COG4257 248 ITTWGTGS-----LHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWLSEADA-GAIGRFDPETARFTVLPIPR--PNS 319 (353)
T ss_pred EeccCCce-----eeEeCcccccceeeeCCCCCCCcceeeeccCCcEEeecccc-CceeecCcccceEEEecCCC--CCC
Confidence 99999885 77787777666666665321 111 11111122 56788888887888876542 222
Q ss_pred ceEEEEE--eCCEEEEeeCCCCeEEEEe
Q 024436 240 SISEVEE--KDGNLWIGSVNMPYAGLYN 265 (268)
Q Consensus 240 ~~s~~~~--~~g~Lyv~s~~~~~v~~~~ 265 (268)
. .+.. ..|++|.+...-+.+.+++
T Consensus 320 g--n~ql~gr~ge~W~~e~gvd~lv~~r 345 (353)
T COG4257 320 G--NIQLDGRPGELWFTEAGVDALVTTR 345 (353)
T ss_pred C--ceeccCCCCceeecccCcceeEEEE
Confidence 2 3332 4588999999888887764
No 13
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.30 E-value=6.2e-10 Score=100.11 Aligned_cols=144 Identities=22% Similarity=0.360 Sum_probs=92.7
Q ss_pred CCCcceEEECCCCCEEEE-EeCCCeEEEEeCCCCe--EEEEE--Ec-----------CCCCCeeEEEeecCCcceEEEEe
Q 024436 33 AIGPESLAFDALGEGPYT-GVSDGRIIKWHQDQRR--WLHFA--RT-----------SPNRNHISVILSGDKTGRLMKYD 96 (268)
Q Consensus 33 ~~~P~gia~~~dG~~l~~-~~~~g~I~~~~~~g~~--~~~~~--~~-----------~~~~~~~~~~~~~~~~g~v~~~d 96 (268)
...|+.+.++|||+.+|+ +...++|+.++.+... +.... .. .+++++++...+...+-.++.++
T Consensus 143 ~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~ 222 (345)
T PF10282_consen 143 GPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYD 222 (345)
T ss_dssp STCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred cccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeec
Confidence 356899999999997766 5678899887654322 33211 11 12334555554544445666777
Q ss_pred CCCCeEEEee---------cCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEe---CCCCCCceEEcC
Q 024436 97 PATKQVTVLL---------GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ---LPGFPDNIKRSP 164 (268)
Q Consensus 97 ~~~~~~~~~~---------~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~---l~g~Pdgia~d~ 164 (268)
+.+++++.+. .+...|.+|+++|||++|||+++..+.|.+|+++.. .+..+.... ....|+++++++
T Consensus 223 ~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~-~g~l~~~~~~~~~G~~Pr~~~~s~ 301 (345)
T PF10282_consen 223 PSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPA-TGTLTLVQTVPTGGKFPRHFAFSP 301 (345)
T ss_dssp TTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTT-TTTEEEEEEEEESSSSEEEEEE-T
T ss_pred ccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecC-CCceEEEEEEeCCCCCccEEEEeC
Confidence 5567655432 122368899999999999999999999999999632 123333322 223699999999
Q ss_pred CCC-EEEEEecCCC
Q 024436 165 RGG-FWVGIHSRRK 177 (268)
Q Consensus 165 dG~-l~va~~~~~~ 177 (268)
+|+ |||++...+.
T Consensus 302 ~g~~l~Va~~~s~~ 315 (345)
T PF10282_consen 302 DGRYLYVANQDSNT 315 (345)
T ss_dssp TSSEEEEEETTTTE
T ss_pred CCCEEEEEecCCCe
Confidence 997 7777777653
No 14
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.26 E-value=7.1e-09 Score=92.38 Aligned_cols=148 Identities=9% Similarity=0.010 Sum_probs=90.6
Q ss_pred CEEEEecCCCCCcceEEECCCCCEEEEEe-CCCeEEEEeC--CCCeEEEEEE--c---------CCCCCeeEEEeecCCc
Q 024436 24 GVVQYQIEGAIGPESLAFDALGEGPYTGV-SDGRIIKWHQ--DQRRWLHFAR--T---------SPNRNHISVILSGDKT 89 (268)
Q Consensus 24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~-~~g~I~~~~~--~g~~~~~~~~--~---------~~~~~~~~~~~~~~~~ 89 (268)
.+++++.+ ..|..++++|||+.+|+.. .++.|..++. +|+ +..... . .+++++++.. ....
T Consensus 27 ~~~~~~~~--~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~-l~~~~~~~~~~~p~~i~~~~~g~~l~v~--~~~~ 101 (330)
T PRK11028 27 LLQVVDVP--GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGA-LTFAAESPLPGSPTHISTDHQGRFLFSA--SYNA 101 (330)
T ss_pred eeeEEecC--CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCc-eEEeeeecCCCCceEEEECCCCCEEEEE--EcCC
Confidence 44455444 3799999999999888765 4687855543 343 221111 1 1233333322 2234
Q ss_pred ceEEEEeCCC-CeE---EEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccC-CCCCce-eEEEe--CCCCCCceE
Q 024436 90 GRLMKYDPAT-KQV---TVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT-SKAGTI-EIVAQ--LPGFPDNIK 161 (268)
Q Consensus 90 g~v~~~d~~~-~~~---~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~-~~~g~~-~~~~~--l~g~Pdgia 161 (268)
+.|..++.++ +.+ .....+...|.+++++|||+++||++...++|++|+++. +.+... ..... ....|++++
T Consensus 102 ~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~ 181 (330)
T PRK11028 102 NCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMV 181 (330)
T ss_pred CeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEE
Confidence 5555554431 322 112234567899999999999999999999999999974 222110 01111 224699999
Q ss_pred EcCCCC-EEEEEecCC
Q 024436 162 RSPRGG-FWVGIHSRR 176 (268)
Q Consensus 162 ~d~dG~-l~va~~~~~ 176 (268)
++++|+ +|+++...+
T Consensus 182 ~~pdg~~lyv~~~~~~ 197 (330)
T PRK11028 182 FHPNQQYAYCVNELNS 197 (330)
T ss_pred ECCCCCEEEEEecCCC
Confidence 999997 677776554
No 15
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.18 E-value=5.5e-09 Score=93.40 Aligned_cols=101 Identities=17% Similarity=0.090 Sum_probs=79.4
Q ss_pred ceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEec---------CCcEEEEEEccCCCCCceeEEEe--CCC---
Q 024436 90 GRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAET---------TSCRILRYWLKTSKAGTIEIVAQ--LPG--- 155 (268)
Q Consensus 90 g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~---------~~~~I~~~~~~~~~~g~~~~~~~--l~g--- 155 (268)
++|+.+|.+++++.........|+|+ +||||+.|||+++ ..+.|.+||.... +...+ +|.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~-----~~~~~i~~p~~p~ 100 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH-----LPIADIELPEGPR 100 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccC-----cEEeEEccCCCch
Confidence 89999999988887777777899997 9999999999999 8899999998752 22322 222
Q ss_pred -----CCCceEEcCCCC-EEEEEecCCCcceeeeEe-eCccceeeeeccccc
Q 024436 156 -----FPDNIKRSPRGG-FWVGIHSRRKGISKLVLS-FPWIGNVLIKLPIDI 200 (268)
Q Consensus 156 -----~Pdgia~d~dG~-l~va~~~~~~~~~~~v~~-~~~~g~~l~~i~~~~ 200 (268)
.|..+++++||+ |||+.+..... |.. ...+++++..+++|.
T Consensus 101 ~~~~~~~~~~~ls~dgk~l~V~n~~p~~~----V~VvD~~~~kvv~ei~vp~ 148 (352)
T TIGR02658 101 FLVGTYPWMTSLTPDNKTLLFYQFSPSPA----VGVVDLEGKAFVRMMDVPD 148 (352)
T ss_pred hhccCccceEEECCCCCEEEEecCCCCCE----EEEEECCCCcEEEEEeCCC
Confidence 355999999996 89888774333 433 457899999999874
No 16
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.11 E-value=8.8e-07 Score=76.53 Aligned_cols=143 Identities=16% Similarity=0.173 Sum_probs=88.2
Q ss_pred CEEEEecCCCCCcceEEECCCCCEEE-EEeCCCeEEEEeCCCCeEEE-EEE--------cCCCCCeeEEEeecCCcceEE
Q 024436 24 GVVQYQIEGAIGPESLAFDALGEGPY-TGVSDGRIIKWHQDQRRWLH-FAR--------TSPNRNHISVILSGDKTGRLM 93 (268)
Q Consensus 24 ~~~~i~~~~~~~P~gia~~~dG~~l~-~~~~~g~I~~~~~~g~~~~~-~~~--------~~~~~~~~~~~~~~~~~g~v~ 93 (268)
.+..+..+ ..|.+++++|+|+.+| ++..++.|..++.++..... +.. ..++++.+. ......+.+.
T Consensus 23 ~~~~~~~~--~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~--~~~~~~~~l~ 98 (300)
T TIGR03866 23 VTRTFPVG--QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILY--IANEDDNLVT 98 (300)
T ss_pred eEEEEECC--CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEE--EEcCCCCeEE
Confidence 45555544 3689999999999765 45567899999875432221 111 112222221 2333457899
Q ss_pred EEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCC-EEEEE
Q 024436 94 KYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG-FWVGI 172 (268)
Q Consensus 94 ~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~-l~va~ 172 (268)
.+|..+++.....+....|++++++|||+.++++......++.|+..+.. ..........|..++++++|+ +|++.
T Consensus 99 ~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~---~~~~~~~~~~~~~~~~s~dg~~l~~~~ 175 (300)
T TIGR03866 99 VIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYE---IVDNVLVDQRPRFAEFTADGKELWVSS 175 (300)
T ss_pred EEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCe---EEEEEEcCCCccEEEECCCCCEEEEEc
Confidence 99988665433333334589999999999888776655567777765421 111111234688899999997 44554
Q ss_pred e
Q 024436 173 H 173 (268)
Q Consensus 173 ~ 173 (268)
.
T Consensus 176 ~ 176 (300)
T TIGR03866 176 E 176 (300)
T ss_pred C
Confidence 3
No 17
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=99.11 E-value=2e-08 Score=91.05 Aligned_cols=187 Identities=18% Similarity=0.195 Sum_probs=109.4
Q ss_pred EEEEec-CCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcCCCCCeeEEEeecCCcceEEEEeCCC--C-
Q 024436 25 VVQYQI-EGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRNHISVILSGDKTGRLMKYDPAT--K- 100 (268)
Q Consensus 25 ~~~i~~-~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~--~- 100 (268)
++.++- |.+..|.+++++++|+++++...+-.- . .+. .....++|++++..+ |
T Consensus 4 ~~l~A~~p~~~~P~~ia~d~~G~l~V~e~~~y~~---~-~~~-------------------~~~~~~rI~~l~d~dgdG~ 60 (367)
T TIGR02604 4 VTLFAAEPLLRNPIAVCFDERGRLWVAEGITYSR---P-AGR-------------------QGPLGDRILILEDADGDGK 60 (367)
T ss_pred EEEEECCCccCCCceeeECCCCCEEEEeCCcCCC---C-CCC-------------------CCCCCCEEEEEEcCCCCCC
Confidence 445553 457899999999999988776533111 0 000 001112666664421 2
Q ss_pred --eEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEE-ccCC-CC-CceeEEEe-CC-------CCCCceEEcCCCC
Q 024436 101 --QVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYW-LKTS-KA-GTIEIVAQ-LP-------GFPDNIKRSPRGG 167 (268)
Q Consensus 101 --~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~-~~~~-~~-g~~~~~~~-l~-------g~Pdgia~d~dG~ 167 (268)
+.+++++++..|+||++.++| |||++. .+|++|. .++. .. +..+++.+ ++ ..|.++++++||+
T Consensus 61 ~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~--~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~ 136 (367)
T TIGR02604 61 YDKSNVFAEELSMVTGLAVAVGG--VYVATP--PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW 136 (367)
T ss_pred cceeEEeecCCCCccceeEecCC--EEEeCC--CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC
Confidence 356778889999999999987 999864 5799884 4332 22 24555544 32 2388999999999
Q ss_pred EEEEEecCCCcceeeeEeeCccceeeeeccccceeeeeeccccCCCcEEEEEECCCCCEEEEEEcCCCCceeceEEEEE-
Q 024436 168 FWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVEE- 246 (268)
Q Consensus 168 l~va~~~~~~~~~~~v~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~g~~~~~~s~~~~- 246 (268)
||++........ +. .+ +. +. . ...... +.+++++++|...+.+.. | +..+-+++.
T Consensus 137 LYv~~G~~~~~~---~~-~~--~~-----~~--~------~~~~~~-g~i~r~~pdg~~~e~~a~--G--~rnp~Gl~~d 192 (367)
T TIGR02604 137 LYFNHGNTLASK---VT-RP--GT-----SD--E------SRQGLG-GGLFRYNPDGGKLRVVAH--G--FQNPYGHSVD 192 (367)
T ss_pred EEEecccCCCce---ec-cC--CC-----cc--C------cccccC-ceEEEEecCCCeEEEEec--C--cCCCccceEC
Confidence 999887543210 00 00 00 00 0 001122 568888888777777653 2 333334433
Q ss_pred eCCEEEEeeCCCCeEE
Q 024436 247 KDGNLWIGSVNMPYAG 262 (268)
Q Consensus 247 ~~g~Lyv~s~~~~~v~ 262 (268)
..|+||++.-.+....
T Consensus 193 ~~G~l~~tdn~~~~~~ 208 (367)
T TIGR02604 193 SWGDVFFCDNDDPPLC 208 (367)
T ss_pred CCCCEEEEccCCCcee
Confidence 4678888766544333
No 18
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.04 E-value=4.3e-08 Score=85.52 Aligned_cols=139 Identities=18% Similarity=0.318 Sum_probs=96.3
Q ss_pred cceEEECCCCCEEEE-EeCCCeEEEEeC-CCCeEEEEE--Ec-----------CCCCCeeEEEeecCCcceEEEEeCCCC
Q 024436 36 PESLAFDALGEGPYT-GVSDGRIIKWHQ-DQRRWLHFA--RT-----------SPNRNHISVILSGDKTGRLMKYDPATK 100 (268)
Q Consensus 36 P~gia~~~dG~~l~~-~~~~g~I~~~~~-~g~~~~~~~--~~-----------~~~~~~~~~~~~~~~~g~v~~~d~~~~ 100 (268)
++..-++|+|+++++ +...++|..++. +|+ ++... .. .|++++.+.+.+-..+-.+|.+++..+
T Consensus 147 ~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~-L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g 225 (346)
T COG2706 147 VHSANFTPDGRYLVVPDLGTDRIFLYDLDDGK-LTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVG 225 (346)
T ss_pred cceeeeCCCCCEEEEeecCCceEEEEEcccCc-cccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCc
Confidence 677889999986654 678899988875 443 22211 11 123346666667777778899998778
Q ss_pred eEEEeecC---------CCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEe--CCCC-CCceEEcCCCCE
Q 024436 101 QVTVLLGN---------LSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ--LPGF-PDNIKRSPRGGF 168 (268)
Q Consensus 101 ~~~~~~~~---------~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~--l~g~-Pdgia~d~dG~l 168 (268)
+++.+..- ......|.+++||++||++++..+.|..|.++.. -+..+.+.. ..|. |+.+.+++.|++
T Consensus 226 ~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~-~g~L~~~~~~~teg~~PR~F~i~~~g~~ 304 (346)
T COG2706 226 KFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD-GGKLELVGITPTEGQFPRDFNINPSGRF 304 (346)
T ss_pred eEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCC-CCEEEEEEEeccCCcCCccceeCCCCCE
Confidence 88776432 2334469999999999999999999999999731 122333332 2354 999999999997
Q ss_pred EEEEecCC
Q 024436 169 WVGIHSRR 176 (268)
Q Consensus 169 ~va~~~~~ 176 (268)
+++..+..
T Consensus 305 Liaa~q~s 312 (346)
T COG2706 305 LIAANQKS 312 (346)
T ss_pred EEEEccCC
Confidence 66666554
No 19
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=99.04 E-value=1.5e-07 Score=85.78 Aligned_cols=183 Identities=19% Similarity=0.244 Sum_probs=117.8
Q ss_pred CCcceEEECCCCCEEEEEe-CCCeEEEEeCCCCeEEEEEEcCC---------CCCeeEEEeecCCcceEEEEeCCCCeEE
Q 024436 34 IGPESLAFDALGEGPYTGV-SDGRIIKWHQDQRRWLHFARTSP---------NRNHISVILSGDKTGRLMKYDPATKQVT 103 (268)
Q Consensus 34 ~~P~gia~~~dG~~l~~~~-~~g~I~~~~~~g~~~~~~~~~~~---------~~~~~~~~~~~~~~g~v~~~d~~~~~~~ 103 (268)
..|.++++.++|...|+.. ..+.|..++........+...+. ..++++..-....++.+..+|++++++.
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~ 153 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVT 153 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEE
Confidence 6899999999999666544 56899999865544444433321 2223322212125689999999988776
Q ss_pred EeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeE---EEeCCCCCCceEEcCCCC-EEEEEecCC-Cc
Q 024436 104 VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEI---VAQLPGFPDNIKRSPRGG-FWVGIHSRR-KG 178 (268)
Q Consensus 104 ~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~---~~~l~g~Pdgia~d~dG~-l~va~~~~~-~~ 178 (268)
........|-|++++|+|+.+|+++..+++|..++.++..... .. .......|.+++++++|+ +|+++.... ..
T Consensus 154 ~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~ 232 (381)
T COG3391 154 ATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNN 232 (381)
T ss_pred EEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCce
Confidence 6554445789999999999999999999999999977532211 11 011224799999999997 899887762 12
Q ss_pred ceeeeEee-Cccceeeee-ccccceeeeeeccccCCCcEEEEEECCCCCEEEEEEcC
Q 024436 179 ISKLVLSF-PWIGNVLIK-LPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEI 233 (268)
Q Consensus 179 ~~~~v~~~-~~~g~~l~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ 233 (268)
+.+. ...+.+... .+.+ ... ...+.++|+|+...+....
T Consensus 233 ----v~~id~~~~~v~~~~~~~~-----------~~~-~~~v~~~p~g~~~yv~~~~ 273 (381)
T COG3391 233 ----VLKIDTATGNVTATDLPVG-----------SGA-PRGVAVDPAGKAAYVANSQ 273 (381)
T ss_pred ----EEEEeCCCceEEEeccccc-----------cCC-CCceeECCCCCEEEEEecC
Confidence 3333 233444332 2221 101 2357778888877777553
No 20
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.03 E-value=1.9e-07 Score=81.52 Aligned_cols=140 Identities=18% Similarity=0.279 Sum_probs=88.9
Q ss_pred CCcceEEECCCCCEEEEEe-CCCeEEEE--eCCCCeEEEE---EEcCC------------------CCCeeEEEeecCCc
Q 024436 34 IGPESLAFDALGEGPYTGV-SDGRIIKW--HQDQRRWLHF---ARTSP------------------NRNHISVILSGDKT 89 (268)
Q Consensus 34 ~~P~gia~~~dG~~l~~~~-~~g~I~~~--~~~g~~~~~~---~~~~~------------------~~~~~~~~~~~~~~ 89 (268)
..|..++++++|+++++.+ +.|.|... ..+|..+... ...++ ..+|+ +..+-+.
T Consensus 89 ~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l--~v~DLG~ 166 (346)
T COG2706 89 SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYL--VVPDLGT 166 (346)
T ss_pred CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEE--EEeecCC
Confidence 4679999999999888865 45665543 4566543221 11111 11122 2234456
Q ss_pred ceEEEEeCCCCeEEEe----ecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEe---CC----C--C
Q 024436 90 GRLMKYDPATKQVTVL----LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ---LP----G--F 156 (268)
Q Consensus 90 g~v~~~d~~~~~~~~~----~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~---l~----g--~ 156 (268)
.+|+.|+.+.|+++.. ......|..|+|.|+|+..|+....+++|.+|..++. .++.+.+.. +| | .
T Consensus 167 Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~-~g~~~~lQ~i~tlP~dF~g~~~ 245 (346)
T COG2706 167 DRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA-VGKFEELQTIDTLPEDFTGTNW 245 (346)
T ss_pred ceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC-CceEEEeeeeccCccccCCCCc
Confidence 6666666665665432 2455779999999999999999999999999999853 234444332 33 2 2
Q ss_pred CCceEEcCCCCE-EEEEecCC
Q 024436 157 PDNIKRSPRGGF-WVGIHSRR 176 (268)
Q Consensus 157 Pdgia~d~dG~l-~va~~~~~ 176 (268)
...|.+++||++ |++..+..
T Consensus 246 ~aaIhis~dGrFLYasNRg~d 266 (346)
T COG2706 246 AAAIHISPDGRFLYASNRGHD 266 (346)
T ss_pred eeEEEECCCCCEEEEecCCCC
Confidence 345889999985 55544443
No 21
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.02 E-value=4.9e-07 Score=80.99 Aligned_cols=145 Identities=12% Similarity=0.138 Sum_probs=80.2
Q ss_pred CCEEEEecCC------CCCcceEEECCCCCEEEEEe-C-CCeEEEEeCCCCeEEEEEEcCCCCCeeEEEee-----cCCc
Q 024436 23 QGVVQYQIEG------AIGPESLAFDALGEGPYTGV-S-DGRIIKWHQDQRRWLHFARTSPNRNHISVILS-----GDKT 89 (268)
Q Consensus 23 ~~~~~i~~~~------~~~P~gia~~~dG~~l~~~~-~-~g~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~-----~~~~ 89 (268)
+-+..|++|. ...|+.++++|||+.+|+.+ . +..|..+|...+.+...... |+...++...+ .-.+
T Consensus 88 ~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v-p~~~~vy~t~e~~~~~~~~D 166 (352)
T TIGR02658 88 LPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV-PDCYHIFPTANDTFFMHCRD 166 (352)
T ss_pred cEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC-CCCcEEEEecCCccEEEeec
Confidence 3455666664 12344999999999998765 4 78999999865543332222 22222211100 0012
Q ss_pred ceEE--EEeCCCCeEEE----eecC-----CCCcceEEEcc-CCCEEEEEecCCcEEEEEEccCCCCCceeEEEeC----
Q 024436 90 GRLM--KYDPATKQVTV----LLGN-----LSFPNGVALSE-DGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL---- 153 (268)
Q Consensus 90 g~v~--~~d~~~~~~~~----~~~~-----~~~pnGia~sp-dg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l---- 153 (268)
|+.. .+|.+ |+... +... +..| .+++ ||+++|++.. +.|+.+++.+........+..+
T Consensus 167 g~~~~v~~d~~-g~~~~~~~~vf~~~~~~v~~rP---~~~~~dg~~~~vs~e--G~V~~id~~~~~~~~~~~~~~~~~~~ 240 (352)
T TIGR02658 167 GSLAKVGYGTK-GNPKIKPTEVFHPEDEYLINHP---AYSNKSGRLVWPTYT--GKIFQIDLSSGDAKFLPAIEAFTEAE 240 (352)
T ss_pred CceEEEEecCC-CceEEeeeeeecCCccccccCC---ceEcCCCcEEEEecC--CeEEEEecCCCcceecceeeeccccc
Confidence 3222 23333 33221 1111 1334 5566 9999999876 9999999865432222332211
Q ss_pred ---CCCCCc---eEEcCCC-CEEEEEec
Q 024436 154 ---PGFPDN---IKRSPRG-GFWVGIHS 174 (268)
Q Consensus 154 ---~g~Pdg---ia~d~dG-~l~va~~~ 174 (268)
.-.|.| ++++++| ++||+.++
T Consensus 241 ~~~~wrP~g~q~ia~~~dg~~lyV~~~~ 268 (352)
T TIGR02658 241 KADGWRPGGWQQVAYHRARDRIYLLADQ 268 (352)
T ss_pred cccccCCCcceeEEEcCCCCEEEEEecC
Confidence 114556 9999997 58997654
No 22
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.00 E-value=1.9e-06 Score=74.38 Aligned_cols=123 Identities=17% Similarity=0.165 Sum_probs=79.3
Q ss_pred CEEEEEeCCCeEEEEeCCC-CeEEEEEEc--------CCCCCeeEEEeecCCcceEEEEeCCCCeEEEeecCCCCcceEE
Q 024436 46 EGPYTGVSDGRIIKWHQDQ-RRWLHFART--------SPNRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVA 116 (268)
Q Consensus 46 ~~l~~~~~~g~I~~~~~~g-~~~~~~~~~--------~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGia 116 (268)
+++++...++.|..++.+. +....+... .+++..+. ......+.|+.+|.++++..........+..++
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~--~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~ 79 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLY--VCASDSDTIQVIDLATGEVIGTLPSGPDPELFA 79 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEE--EEECCCCeEEEEECCCCcEEEeccCCCCccEEE
Confidence 4566667778888887643 322222211 12222221 233456789999988777654443344578899
Q ss_pred EccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEe--CCCCCCceEEcCCCCEEEEEecC
Q 024436 117 LSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ--LPGFPDNIKRSPRGGFWVGIHSR 175 (268)
Q Consensus 117 ~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~--l~g~Pdgia~d~dG~l~va~~~~ 175 (268)
++|||+.+|++....++|..|++... +.+.. ....|.+++++++|++++.....
T Consensus 80 ~~~~g~~l~~~~~~~~~l~~~d~~~~-----~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~ 135 (300)
T TIGR03866 80 LHPNGKILYIANEDDNLVTVIDIETR-----KVLAEIPVGVEPEGMAVSPDGKIVVNTSET 135 (300)
T ss_pred ECCCCCEEEEEcCCCCeEEEEECCCC-----eEEeEeeCCCCcceEEECCCCCEEEEEecC
Confidence 99999999999877889999998742 22222 22358899999999977765544
No 23
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.89 E-value=1e-07 Score=86.40 Aligned_cols=170 Identities=16% Similarity=0.214 Sum_probs=98.0
Q ss_pred cCCcceEEEEeCCCCeEEEee-cCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEe--CCCCCCceEE
Q 024436 86 GDKTGRLMKYDPATKQVTVLL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ--LPGFPDNIKR 162 (268)
Q Consensus 86 ~~~~g~v~~~d~~~~~~~~~~-~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~--l~g~Pdgia~ 162 (268)
....++|..+|.++.++.... .+...+.+++++|||+++||++. .+.|.++|+...+ .+.+ ....|.|+++
T Consensus 12 ~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r-dg~vsviD~~~~~-----~v~~i~~G~~~~~i~~ 85 (369)
T PF02239_consen 12 ERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANR-DGTVSVIDLATGK-----VVATIKVGGNPRGIAV 85 (369)
T ss_dssp EGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEET-TSEEEEEETTSSS-----EEEEEE-SSEEEEEEE
T ss_pred ecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcC-CCeEEEEECCccc-----EEEEEecCCCcceEEE
Confidence 356789999999887654444 33344677899999999999986 5799999987532 3333 2346999999
Q ss_pred cCCCC-EEEEEecCCCcceeeeEee-Cccceeeeeccccce-------eeeeeccccCCCcEEEEEECCCCCEEEEEEcC
Q 024436 163 SPRGG-FWVGIHSRRKGISKLVLSF-PWIGNVLIKLPIDIV-------KIHSSLVKLSGNGGMAMRISEQGNVLEILEEI 233 (268)
Q Consensus 163 d~dG~-l~va~~~~~~~~~~~v~~~-~~~g~~l~~i~~~~~-------~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ 233 (268)
++||+ +|++++..+. +..+ ..+.+.+..++.... ++.......... .+++.+-..|++..+ +-.
T Consensus 86 s~DG~~~~v~n~~~~~-----v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~-~fVv~lkd~~~I~vV-dy~ 158 (369)
T PF02239_consen 86 SPDGKYVYVANYEPGT-----VSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRP-EFVVNLKDTGEIWVV-DYS 158 (369)
T ss_dssp --TTTEEEEEEEETTE-----EEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSS-EEEEEETTTTEEEEE-ETT
T ss_pred cCCCCEEEEEecCCCc-----eeEeccccccceeecccccccccccCCCceeEEecCCCC-EEEEEEccCCeEEEE-Eec
Confidence 99997 7778877764 5444 467888888876522 112222111111 345555555555433 111
Q ss_pred CCCcee--c------eEEEE-Ee-CCEEEEeeCCCCeEEEEeCCC
Q 024436 234 GRKMWR--S------ISEVE-EK-DGNLWIGSVNMPYAGLYNYSS 268 (268)
Q Consensus 234 ~g~~~~--~------~s~~~-~~-~g~Lyv~s~~~~~v~~~~~~~ 268 (268)
+.+.+. . +-.+. .. +.+++++...+|.|+++|+++
T Consensus 159 d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~ 203 (369)
T PF02239_consen 159 DPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKT 203 (369)
T ss_dssp TSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTT
T ss_pred cccccceeeecccccccccccCcccceeeecccccceeEEEeecc
Confidence 111111 0 11222 22 456889999999999999864
No 24
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.83 E-value=6.3e-07 Score=84.66 Aligned_cols=153 Identities=16% Similarity=0.186 Sum_probs=103.6
Q ss_pred CCCEEEEecCCCCCcceEEECCCCCEEEEEe---C-CCeEEEEeCCCCeEEEEEE------cCCCCCeeEEEeecCCcce
Q 024436 22 TQGVVQYQIEGAIGPESLAFDALGEGPYTGV---S-DGRIIKWHQDQRRWLHFAR------TSPNRNHISVILSGDKTGR 91 (268)
Q Consensus 22 ~~~~~~i~~~~~~~P~gia~~~dG~~l~~~~---~-~g~I~~~~~~g~~~~~~~~------~~~~~~~~~~~~~~~~~g~ 91 (268)
++-+.++.+++ .|..+++++||+.+|+.+ . ...+..++.....+...-. ..+++.+.. . ..++
T Consensus 225 meV~~qV~Vdg--npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~--V---~gn~ 297 (635)
T PRK02888 225 MEVAWQVMVDG--NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKT--I---GGSK 297 (635)
T ss_pred ceEEEEEEeCC--CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEE--E---CCCE
Confidence 34668888987 899999999999998875 2 2344444433222221111 112222222 1 2467
Q ss_pred EEEEeCCC-----CeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCC------CCCcee-EEEe--CCCCC
Q 024436 92 LMKYDPAT-----KQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS------KAGTIE-IVAQ--LPGFP 157 (268)
Q Consensus 92 v~~~d~~~-----~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~------~~g~~~-~~~~--l~g~P 157 (268)
|-.+|..+ .++.....-...|.|++++|||+++|+++..++.+.++|++.- ++..+. +.++ +.-.|
T Consensus 298 V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGP 377 (635)
T PRK02888 298 VPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGP 377 (635)
T ss_pred EEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCc
Confidence 99999986 3455556677899999999999999999999999999998741 111111 2333 32369
Q ss_pred CceEEcCCCCEEEEEecCCCcceee
Q 024436 158 DNIKRSPRGGFWVGIHSRRKGISKL 182 (268)
Q Consensus 158 dgia~d~dG~l~va~~~~~~~~~~~ 182 (268)
-..++|++|+.|++.+-.. .+.+|
T Consensus 378 LHTaFDg~G~aytslf~ds-qv~kw 401 (635)
T PRK02888 378 LHTAFDGRGNAYTTLFLDS-QIVKW 401 (635)
T ss_pred ceEEECCCCCEEEeEeecc-eeEEE
Confidence 9999999999999999876 44444
No 25
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.76 E-value=9.4e-06 Score=73.71 Aligned_cols=233 Identities=12% Similarity=0.105 Sum_probs=125.0
Q ss_pred CEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEE-EEE--------EcCCCCCeeEEEeecCCcceEEE
Q 024436 24 GVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWL-HFA--------RTSPNRNHISVILSGDKTGRLMK 94 (268)
Q Consensus 24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~-~~~--------~~~~~~~~~~~~~~~~~~g~v~~ 94 (268)
-+.+|+.++ ..+.+++++|||+.+|+...+|.|..+|....... .+. ..++++.|+.. .....+.+..
T Consensus 28 ~~~~i~~~~-~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v--~n~~~~~v~v 104 (369)
T PF02239_consen 28 VVARIPTGG-APHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYV--ANYEPGTVSV 104 (369)
T ss_dssp EEEEEE-ST-TEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEE--EEEETTEEEE
T ss_pred EEEEEcCCC-CceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEE--EecCCCceeE
Confidence 567777764 22456889999999999888999999998654322 221 12445555543 2234578899
Q ss_pred EeCCCCeEEEeecCC--------CCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCC
Q 024436 95 YDPATKQVTVLLGNL--------SFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRG 166 (268)
Q Consensus 95 ~d~~~~~~~~~~~~~--------~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG 166 (268)
+|.++.++....... ....+|..+|.+...+++-...++|+.++..+.+.- ..........|.+..+|++|
T Consensus 105 ~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~-~~~~i~~g~~~~D~~~dpdg 183 (369)
T PF02239_consen 105 IDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNL-KVTTIKVGRFPHDGGFDPDG 183 (369)
T ss_dssp EETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCE-EEEEEE--TTEEEEEE-TTS
T ss_pred eccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccc-ceeeecccccccccccCccc
Confidence 998877654432211 234588899998877778888899999998753211 11222334579999999999
Q ss_pred CE-EEEEecCCCcceeeeEe-eCccceeeeecccccee--------ee------eeccccCCCcEEEEE------ECC-C
Q 024436 167 GF-WVGIHSRRKGISKLVLS-FPWIGNVLIKLPIDIVK--------IH------SSLVKLSGNGGMAMR------ISE-Q 223 (268)
Q Consensus 167 ~l-~va~~~~~~~~~~~v~~-~~~~g~~l~~i~~~~~~--------~~------~~~~~~~~~~~~~~~------~~~-~ 223 (268)
++ +++.+..+ + +.. ....+++...++.+..+ ++ +............+- .+. +
T Consensus 184 ry~~va~~~sn-~----i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~ 258 (369)
T PF02239_consen 184 RYFLVAANGSN-K----IAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYA 258 (369)
T ss_dssp SEEEEEEGGGT-E----EEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTB
T ss_pred ceeeecccccc-e----eEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhc
Confidence 85 55555554 3 322 45666666655543111 00 000000000001111 121 2
Q ss_pred CCEEEEEEcCCCCceeceEEEEEeCCEEEEe---eCCCCeEEEEeCCC
Q 024436 224 GNVLEILEEIGRKMWRSISEVEEKDGNLWIG---SVNMPYAGLYNYSS 268 (268)
Q Consensus 224 G~~~~~~~~~~g~~~~~~s~~~~~~g~Lyv~---s~~~~~v~~~~~~~ 268 (268)
.+++..+....+.. - ....+...+||+. +-..+.|.+||.++
T Consensus 259 wkvv~~I~~~G~gl-F--i~thP~s~~vwvd~~~~~~~~~v~viD~~t 303 (369)
T PF02239_consen 259 WKVVKTIPTQGGGL-F--IKTHPDSRYVWVDTFLNPDADTVQVIDKKT 303 (369)
T ss_dssp TSEEEEEE-SSSS-----EE--TT-SEEEEE-TT-SSHT-EEEEECCG
T ss_pred CeEEEEEECCCCcc-e--eecCCCCccEEeeccCCCCCceEEEEECcC
Confidence 56777766542221 1 1112345789999 67788999999864
No 26
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=98.70 E-value=3.5e-06 Score=77.83 Aligned_cols=152 Identities=16% Similarity=0.189 Sum_probs=92.2
Q ss_pred CEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEE------Ec-----------CCC------CCee
Q 024436 24 GVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFA------RT-----------SPN------RNHI 80 (268)
Q Consensus 24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~------~~-----------~~~------~~~~ 80 (268)
.++++.- ++..|.+|++.|||++|++....|+|.++++++....... .. .|+ ..++
T Consensus 21 ~~~~va~-GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~l 99 (454)
T TIGR03606 21 DKKVLLS-GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYV 99 (454)
T ss_pred EEEEEEC-CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEE
Confidence 3455544 4889999999999998887766799999987543211111 00 011 1133
Q ss_pred EEEeecC-------CcceEEEEeCC--CCe---EEEeecCC-----CCcceEEEccCCCEEEEEecC-------------
Q 024436 81 SVILSGD-------KTGRLMKYDPA--TKQ---VTVLLGNL-----SFPNGVALSEDGNYILLAETT------------- 130 (268)
Q Consensus 81 ~~~~~~~-------~~g~v~~~d~~--~~~---~~~~~~~~-----~~pnGia~spdg~~lyva~~~------------- 130 (268)
+...+.. ...+|.|+..+ +.+ .+.+..++ ++-..|+|+|||+ |||+-..
T Consensus 100 Yvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~-LYVs~GD~g~~~~~n~~~~~ 178 (454)
T TIGR03606 100 YISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGK-IYYTIGEQGRNQGANFFLPN 178 (454)
T ss_pred EEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCc-EEEEECCCCCCCcccccCcc
Confidence 3333211 13567776543 111 23343333 3445799999995 9996332
Q ss_pred -------------------CcEEEEEEccCCCC-------C-ceeEEEeCCCCCCceEEcCCCCEEEEEecCCC
Q 024436 131 -------------------SCRILRYWLKTSKA-------G-TIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRK 177 (268)
Q Consensus 131 -------------------~~~I~~~~~~~~~~-------g-~~~~~~~l~g~Pdgia~d~dG~l~va~~~~~~ 177 (268)
.++|+|++.+|.-. + ..++++.---.|.|+++|++|.||+++++.+.
T Consensus 179 ~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp~G~Lw~~e~Gp~~ 252 (454)
T TIGR03606 179 QAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFTPDGTLYASEQGPNS 252 (454)
T ss_pred hhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEECCCCCEEEEecCCCC
Confidence 23789999886311 0 12344432236999999999999999998753
No 27
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=98.68 E-value=1.1e-07 Score=67.70 Aligned_cols=53 Identities=32% Similarity=0.511 Sum_probs=48.1
Q ss_pred cCCcceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEcc
Q 024436 86 GDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLK 140 (268)
Q Consensus 86 ~~~~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~ 140 (268)
..+.+.|..+|++ +.+.+++++.+||||+++||+++|||++...+.|++|+.+
T Consensus 32 ~~~~~~Vvyyd~~--~~~~va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 32 GLPWGNVVYYDGK--EVKVVASGFSFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred cCCCceEEEEeCC--EeEEeeccCCCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 3577899999985 6888999999999999999999999999999999999865
No 28
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.64 E-value=8.5e-06 Score=74.35 Aligned_cols=147 Identities=18% Similarity=0.259 Sum_probs=100.1
Q ss_pred CEEEEecCCCCCcceEEECCCCCEEEEEeC---CCeEEEEeCCCCeEEEEEEcC---------CCCCeeEEEeecCCcce
Q 024436 24 GVVQYQIEGAIGPESLAFDALGEGPYTGVS---DGRIIKWHQDQRRWLHFARTS---------PNRNHISVILSGDKTGR 91 (268)
Q Consensus 24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~~---~g~I~~~~~~g~~~~~~~~~~---------~~~~~~~~~~~~~~~g~ 91 (268)
.++.+.++. .|.+++++++|+.+|+... ++++..++............+ +.++.+ +......++
T Consensus 108 ~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~v--yv~~~~~~~ 183 (381)
T COG3391 108 VLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKV--YVTNSDDNT 183 (381)
T ss_pred eeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeE--EEEecCCCe
Confidence 667777776 8999999999977776554 699999998766443332221 122222 223356788
Q ss_pred EEEEeCCCCeEEE-----eecCCCCcceEEEccCCCEEEEEecCC--cEEEEEEccCCCCCceeEEEeCCC-CCCceEEc
Q 024436 92 LMKYDPATKQVTV-----LLGNLSFPNGVALSEDGNYILLAETTS--CRILRYWLKTSKAGTIEIVAQLPG-FPDNIKRS 163 (268)
Q Consensus 92 v~~~d~~~~~~~~-----~~~~~~~pnGia~spdg~~lyva~~~~--~~I~~~~~~~~~~g~~~~~~~l~g-~Pdgia~d 163 (268)
|..+|.++..+.. .......|.+++++|||+.+||++..+ +++.+++.......... ..... .|.+++++
T Consensus 184 v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~--~~~~~~~~~~v~~~ 261 (381)
T COG3391 184 VSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATD--LPVGSGAPRGVAVD 261 (381)
T ss_pred EEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEec--cccccCCCCceeEC
Confidence 9999987555543 345567899999999999999999887 68998887643211100 01122 69999999
Q ss_pred CCCC-EEEEEecCC
Q 024436 164 PRGG-FWVGIHSRR 176 (268)
Q Consensus 164 ~dG~-l~va~~~~~ 176 (268)
|+|+ +|++....+
T Consensus 262 p~g~~~yv~~~~~~ 275 (381)
T COG3391 262 PAGKAAYVANSQGG 275 (381)
T ss_pred CCCCEEEEEecCCC
Confidence 9997 566655544
No 29
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=98.53 E-value=5.5e-06 Score=73.64 Aligned_cols=140 Identities=33% Similarity=0.557 Sum_probs=93.8
Q ss_pred CCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEc--CCC-----------------CCeeE-------EEee
Q 024436 32 GAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFART--SPN-----------------RNHIS-------VILS 85 (268)
Q Consensus 32 ~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~--~~~-----------------~~~~~-------~~~~ 85 (268)
.+.+||.+.+++.|.-.|+...+|+|+++...-..|..++.. +.. |+... ++.-
T Consensus 52 ~~~g~E~~~fd~~~~gp~~~v~dg~il~~~g~~~Gwv~~~~~~~s~~~~~~~~~~~~~~e~~CGRPLGl~f~~~ggdL~V 131 (376)
T KOG1520|consen 52 HLTGPESLLFDPQGGGPYTGVVDGRILKYTGNDDGWVKFADTKDSTNRSQCCDPGSFETEPLCGRPLGIRFDKKGGDLYV 131 (376)
T ss_pred ccCChhhheecccCCCceEEEECCceEEEeccCceEEEEEeccccccccccCCCcceecccccCCcceEEeccCCCeEEE
Confidence 467899999999998899999999999998764456666644 211 12111 1111
Q ss_pred cCCcceEEEEeCCCCeEEEee-----cCCCCcceEEEccCCCEEEEEecCC-----------------cEEEEEEccCCC
Q 024436 86 GDKTGRLMKYDPATKQVTVLL-----GNLSFPNGVALSEDGNYILLAETTS-----------------CRILRYWLKTSK 143 (268)
Q Consensus 86 ~~~~g~v~~~d~~~~~~~~~~-----~~~~~pnGia~spdg~~lyva~~~~-----------------~~I~~~~~~~~~ 143 (268)
.+..=.++.+++++++.+.+. ..+.+.|++.++++| .+|++|+.. +|+.+||....
T Consensus 132 aDAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g-~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK- 209 (376)
T KOG1520|consen 132 ADAYLGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEG-VVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTK- 209 (376)
T ss_pred EecceeeEEECCCCCcceeccccccCeeeeecCceeEcCCC-eEEEeccccccchhheEEeeecCCCccceEEecCccc-
Confidence 122335678888866655543 235789999999976 699999844 56777776531
Q ss_pred CCceeEEEe-CCCCCCceEEcCCCC-EEEEEecCC
Q 024436 144 AGTIEIVAQ-LPGFPDNIKRSPRGG-FWVGIHSRR 176 (268)
Q Consensus 144 ~g~~~~~~~-l~g~Pdgia~d~dG~-l~va~~~~~ 176 (268)
..+++.+ | ..|+|+++.+|+. +.+|+....
T Consensus 210 --~~~VLld~L-~F~NGlaLS~d~sfvl~~Et~~~ 241 (376)
T KOG1520|consen 210 --VTKVLLDGL-YFPNGLALSPDGSFVLVAETTTA 241 (376)
T ss_pred --chhhhhhcc-cccccccCCCCCCEEEEEeeccc
Confidence 2333433 4 3699999999997 555665553
No 30
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=98.49 E-value=3.2e-06 Score=76.72 Aligned_cols=64 Identities=16% Similarity=0.152 Sum_probs=49.3
Q ss_pred CCCcceEEEccCCCEEEEEecCC-------------------cEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEE
Q 024436 109 LSFPNGVALSEDGNYILLAETTS-------------------CRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFW 169 (268)
Q Consensus 109 ~~~pnGia~spdg~~lyva~~~~-------------------~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~ 169 (268)
...+|++++.|||+ ||++.... +.|+++++++. ..+.++.--..|.|+++|++|++|
T Consensus 123 ~~~~~~l~~gpDG~-LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~---~~e~~a~G~rnp~Gl~~d~~G~l~ 198 (367)
T TIGR02604 123 HHSLNSLAWGPDGW-LYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGG---KLRVVAHGFQNPYGHSVDSWGDVF 198 (367)
T ss_pred cccccCceECCCCC-EEEecccCCCceeccCCCccCcccccCceEEEEecCCC---eEEEEecCcCCCccceECCCCCEE
Confidence 35689999999995 99987621 57999998863 345665422369999999999999
Q ss_pred EEEecCC
Q 024436 170 VGIHSRR 176 (268)
Q Consensus 170 va~~~~~ 176 (268)
+++....
T Consensus 199 ~tdn~~~ 205 (367)
T TIGR02604 199 FCDNDDP 205 (367)
T ss_pred EEccCCC
Confidence 9988554
No 31
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.49 E-value=0.00019 Score=66.62 Aligned_cols=131 Identities=15% Similarity=0.109 Sum_probs=81.4
Q ss_pred cceEEECCCCCEEE-EEe--CCCeEEEEeCCCCeEEEEEE---------cCCCCCeeEEEeecCCcceEEEEeCCCCeEE
Q 024436 36 PESLAFDALGEGPY-TGV--SDGRIIKWHQDQRRWLHFAR---------TSPNRNHISVILSGDKTGRLMKYDPATKQVT 103 (268)
Q Consensus 36 P~gia~~~dG~~l~-~~~--~~g~I~~~~~~g~~~~~~~~---------~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~ 103 (268)
-...+++|||+.++ +.. .+..|+.++.++.....+.. .+|++..+...........||.+|.++++.+
T Consensus 204 v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~ 283 (435)
T PRK05137 204 VLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT 283 (435)
T ss_pred eEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE
Confidence 34578999998654 443 35789999876543222221 1344443332223344567999999988887
Q ss_pred EeecCCCCcceEEEccCCCEEEEEecC--CcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEE
Q 024436 104 VLLGNLSFPNGVALSEDGNYILLAETT--SCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFW 169 (268)
Q Consensus 104 ~~~~~~~~pnGia~spdg~~lyva~~~--~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~ 169 (268)
.+...........|+|||+.|+++... ...|++++++++. .+.+....+.-...++.|||+..
T Consensus 284 ~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~---~~~lt~~~~~~~~~~~SpdG~~i 348 (435)
T PRK05137 284 RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN---PRRISFGGGRYSTPVWSPRGDLI 348 (435)
T ss_pred EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC---eEEeecCCCcccCeEECCCCCEE
Confidence 776554455678999999988766432 3489999987642 23332222333457899999743
No 32
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=98.46 E-value=0.00011 Score=64.46 Aligned_cols=141 Identities=15% Similarity=0.210 Sum_probs=85.0
Q ss_pred cceEEECCCCCEEEEEeCC------------CeEEEEeCCCCeEE-EEEEc---CCCC---------------CeeEEEe
Q 024436 36 PESLAFDALGEGPYTGVSD------------GRIIKWHQDQRRWL-HFART---SPNR---------------NHISVIL 84 (268)
Q Consensus 36 P~gia~~~dG~~l~~~~~~------------g~I~~~~~~g~~~~-~~~~~---~~~~---------------~~~~~~~ 84 (268)
..++.+|+.|++++.+.+. -+|+.++.....+. .+... .+.. .-...++
T Consensus 3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYI 82 (287)
T PF03022_consen 3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYI 82 (287)
T ss_dssp EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEE
T ss_pred ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEE
Confidence 4678899999988887631 37888887544322 22110 0100 0134455
Q ss_pred ecCCcceEEEEeCCCCeEEEeecCC--------------------CCcceEEEcc---CCCEEEEEecCCcEEEEEEcc-
Q 024436 85 SGDKTGRLMKYDPATKQVTVLLGNL--------------------SFPNGVALSE---DGNYILLAETTSCRILRYWLK- 140 (268)
Q Consensus 85 ~~~~~g~v~~~d~~~~~~~~~~~~~--------------------~~pnGia~sp---dg~~lyva~~~~~~I~~~~~~- 140 (268)
++...+.|.++|..+++..++..+. ....||+++| ||++||+.-..+.++++.+.+
T Consensus 83 tD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~ 162 (287)
T PF03022_consen 83 TDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSV 162 (287)
T ss_dssp EETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHH
T ss_pred eCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHH
Confidence 6666678999999887766543221 1245789977 889999999888999999875
Q ss_pred --CCCCCc-------eeEEEeCCCCCCceEEcCCCCEEEEEecCC
Q 024436 141 --TSKAGT-------IEIVAQLPGFPDNIKRSPRGGFWVGIHSRR 176 (268)
Q Consensus 141 --~~~~g~-------~~~~~~l~g~Pdgia~d~dG~l~va~~~~~ 176 (268)
...... .+.+.+-++..+|+++|++|+||.+....+
T Consensus 163 L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~ 207 (287)
T PF03022_consen 163 LRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQN 207 (287)
T ss_dssp HCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCT
T ss_pred hhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCCC
Confidence 222111 122333224579999999999999998775
No 33
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.45 E-value=1.8e-05 Score=69.85 Aligned_cols=145 Identities=18% Similarity=0.275 Sum_probs=99.7
Q ss_pred ecCCcceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeC-----CCCCCc
Q 024436 85 SGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL-----PGFPDN 159 (268)
Q Consensus 85 ~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l-----~g~Pdg 159 (268)
.+-..++|+++++.+++.+.......++++..++.+| .|.+++.. +.+++.+.+. ..+.+.+. ...|+-
T Consensus 42 ~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g-~Lv~~~~g---~~~~~~~~~~--~~t~~~~~~~~~~~~r~ND 115 (307)
T COG3386 42 VDILGGRIHRLDPETGKKRVFPSPGGFSSGALIDAGG-RLIACEHG---VRLLDPDTGG--KITLLAEPEDGLPLNRPND 115 (307)
T ss_pred EeCCCCeEEEecCCcCceEEEECCCCcccceeecCCC-eEEEEccc---cEEEeccCCc--eeEEeccccCCCCcCCCCc
Confidence 4456789999999888888888777889999999887 58777743 4444444211 11444332 146899
Q ss_pred eEEcCCCCEEEEEecCCCcceeeeEeeCccceeeeeccccceeeeeeccccCCCcEEEEEECCCCCEEEEEEcCCCCcee
Q 024436 160 IKRSPRGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWR 239 (268)
Q Consensus 160 ia~d~dG~l~va~~~~~~~~~~~v~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~g~~~~ 239 (268)
..+|++|++|++..... . . + . ....+. +.+++++|+|..++.+.+. +.
T Consensus 116 ~~v~pdG~~wfgt~~~~-~-~---------~-------~---------~~~~~~-G~lyr~~p~g~~~~l~~~~----~~ 163 (307)
T COG3386 116 GVVDPDGRIWFGDMGYF-D-L---------G-------K---------SEERPT-GSLYRVDPDGGVVRLLDDD----LT 163 (307)
T ss_pred eeEcCCCCEEEeCCCcc-c-c---------C-------c---------cccCCc-ceEEEEcCCCCEEEeecCc----EE
Confidence 99999999999887631 0 0 0 0 012344 6799999999888887652 22
Q ss_pred ceEEEE--EeCCEEEEeeCCCCeEEEEeCC
Q 024436 240 SISEVE--EKDGNLWIGSVNMPYAGLYNYS 267 (268)
Q Consensus 240 ~~s~~~--~~~g~Lyv~s~~~~~v~~~~~~ 267 (268)
.+.+++ .++..||++....++|.+++++
T Consensus 164 ~~NGla~SpDg~tly~aDT~~~~i~r~~~d 193 (307)
T COG3386 164 IPNGLAFSPDGKTLYVADTPANRIHRYDLD 193 (307)
T ss_pred ecCceEECCCCCEEEEEeCCCCeEEEEecC
Confidence 222333 3455899999999999999875
No 34
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.42 E-value=0.0003 Score=60.22 Aligned_cols=150 Identities=13% Similarity=0.104 Sum_probs=73.6
Q ss_pred CEEEEecCCC-CCcceEEECCCCCEEEE-EeCCCeEEEEeCCCCeEEEEEEcCCCC--------CeeEEEeecCCcceEE
Q 024436 24 GVVQYQIEGA-IGPESLAFDALGEGPYT-GVSDGRIIKWHQDQRRWLHFARTSPNR--------NHISVILSGDKTGRLM 93 (268)
Q Consensus 24 ~~~~i~~~~~-~~P~gia~~~dG~~l~~-~~~~g~I~~~~~~g~~~~~~~~~~~~~--------~~~~~~~~~~~~g~v~ 93 (268)
.|+..++++. ..+.||+++||.+.+++ ..+.+.|+.++.+|+.+......+-+. +-...+ .....++++
T Consensus 11 ~i~~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~g~~~~vl-~~Er~~~L~ 89 (248)
T PF06977_consen 11 VIEAKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEGITYLGNGRYVL-SEERDQRLY 89 (248)
T ss_dssp EEEEEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE-STTEEEE-EETTTTEEE
T ss_pred EEeeeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEECCCEEEE-EEcCCCcEE
Confidence 4556678875 45999999998665555 556799999999988554433221110 001112 233456666
Q ss_pred EEeC--CCCeE-----EEeecCC-----CCcceEEEccCCCEEEEEecC-CcEEEEEEccCCCCCceeEEEe--CC----
Q 024436 94 KYDP--ATKQV-----TVLLGNL-----SFPNGVALSEDGNYILLAETT-SCRILRYWLKTSKAGTIEIVAQ--LP---- 154 (268)
Q Consensus 94 ~~d~--~~~~~-----~~~~~~~-----~~pnGia~spdg~~lyva~~~-~~~I~~~~~~~~~~g~~~~~~~--l~---- 154 (268)
.++. .+..+ +.+.-++ ..-.||+++|.++.||++.-. ..+|+.++..... ........ +.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~-~~~~~~~~~~~~~~~~ 168 (248)
T PF06977_consen 90 IFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGG-FDLFVSDDQDLDDDKL 168 (248)
T ss_dssp EEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-S-S--EEEE-HHHH-HT-
T ss_pred EEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCc-cceeeccccccccccc
Confidence 5544 32222 1121111 223699999998889987433 3467776652110 01111111 10
Q ss_pred --CCCCceEEcCC-CCEEEEEecC
Q 024436 155 --GFPDNIKRSPR-GGFWVGIHSR 175 (268)
Q Consensus 155 --g~Pdgia~d~d-G~l~va~~~~ 175 (268)
.-|-++++|+. |+||+-...+
T Consensus 169 ~~~d~S~l~~~p~t~~lliLS~es 192 (248)
T PF06977_consen 169 FVRDLSGLSYDPRTGHLLILSDES 192 (248)
T ss_dssp -SS---EEEEETTTTEEEEEETTT
T ss_pred eeccccceEEcCCCCeEEEEECCC
Confidence 24778888875 4576654444
No 35
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.40 E-value=0.00027 Score=65.87 Aligned_cols=132 Identities=17% Similarity=0.148 Sum_probs=80.7
Q ss_pred eEEECCCCCEEE-EEeCC--CeEEEEeCCCCeEEEEE---------EcCCCCCeeEEEeecCCcceEEEEeCCCCeEEEe
Q 024436 38 SLAFDALGEGPY-TGVSD--GRIIKWHQDQRRWLHFA---------RTSPNRNHISVILSGDKTGRLMKYDPATKQVTVL 105 (268)
Q Consensus 38 gia~~~dG~~l~-~~~~~--g~I~~~~~~g~~~~~~~---------~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~ 105 (268)
..+++|||+.++ +...+ .+|+.++.++....... ..+|++.++.-.........||.+|.++++.+.+
T Consensus 222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~l 301 (448)
T PRK04792 222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRI 301 (448)
T ss_pred CceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEEC
Confidence 678999998664 44433 46888887653222221 1234444443223334445799999998888777
Q ss_pred ecCCCCcceEEEccCCCEEEEEec--CCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCE-EEEE
Q 024436 106 LGNLSFPNGVALSEDGNYILLAET--TSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGF-WVGI 172 (268)
Q Consensus 106 ~~~~~~pnGia~spdg~~lyva~~--~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l-~va~ 172 (268)
..........+|+|||+.|+++.. ....|++++++++. .+.+..-.....+.++++||+. +.+.
T Consensus 302 t~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~---~~~Lt~~g~~~~~~~~SpDG~~l~~~~ 368 (448)
T PRK04792 302 TRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK---VSRLTFEGEQNLGGSITPDGRSMIMVN 368 (448)
T ss_pred ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC---EEEEecCCCCCcCeeECCCCCEEEEEE
Confidence 665555667899999998877653 23578888887533 2222111122345689999974 4433
No 36
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.39 E-value=0.00036 Score=64.73 Aligned_cols=131 Identities=18% Similarity=0.159 Sum_probs=79.6
Q ss_pred ceEEECCCCCEEEE-EeC--CCeEEEEeCCCCeEEEEE---------EcCCCCCeeEEEeecCCcceEEEEeCCCCeEEE
Q 024436 37 ESLAFDALGEGPYT-GVS--DGRIIKWHQDQRRWLHFA---------RTSPNRNHISVILSGDKTGRLMKYDPATKQVTV 104 (268)
Q Consensus 37 ~gia~~~dG~~l~~-~~~--~g~I~~~~~~g~~~~~~~---------~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~ 104 (268)
.+.+++|||+.++. ... ..+|++++.++.....+. ..++++..+...........||.+|.++++.+.
T Consensus 207 ~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~ 286 (433)
T PRK04922 207 LSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR 286 (433)
T ss_pred ccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEE
Confidence 35688999986554 332 357888887654322221 113444444322233445689999999888877
Q ss_pred eecCCCCcceEEEccCCCEEEEEecC--CcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEE
Q 024436 105 LLGNLSFPNGVALSEDGNYILLAETT--SCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWV 170 (268)
Q Consensus 105 ~~~~~~~pnGia~spdg~~lyva~~~--~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~v 170 (268)
+..........+|+|||+.|+++... ...|+.++++++. .+.+..........++.+||+..+
T Consensus 287 lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~---~~~lt~~g~~~~~~~~SpDG~~Ia 351 (433)
T PRK04922 287 LTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS---AERLTFQGNYNARASVSPDGKKIA 351 (433)
T ss_pred CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC---eEEeecCCCCccCEEECCCCCEEE
Confidence 66554444578999999988776432 3468888886532 222221122344689999997433
No 37
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=98.32 E-value=2.4e-05 Score=70.04 Aligned_cols=142 Identities=22% Similarity=0.248 Sum_probs=85.7
Q ss_pred CCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcC----------------C---CCCeeEEEeec------C
Q 024436 33 AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTS----------------P---NRNHISVILSG------D 87 (268)
Q Consensus 33 ~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~----------------~---~~~~~~~~~~~------~ 87 (268)
|+.|.++++.|||+++++. ..|+|+++..+|.....+.... | ...+++...+. .
T Consensus 1 L~~P~~~a~~pdG~l~v~e-~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~ 79 (331)
T PF07995_consen 1 LNNPRSMAFLPDGRLLVAE-RSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGD 79 (331)
T ss_dssp ESSEEEEEEETTSCEEEEE-TTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSS
T ss_pred CCCceEEEEeCCCcEEEEe-CCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCC
Confidence 3579999999999976654 4999999997776312222210 1 01233333221 1
Q ss_pred CcceEEEEeCCCC--e---EEEee-------cCCCCcceEEEccCCCEEEEEec-------------CCcEEEEEEccCC
Q 024436 88 KTGRLMKYDPATK--Q---VTVLL-------GNLSFPNGVALSEDGNYILLAET-------------TSCRILRYWLKTS 142 (268)
Q Consensus 88 ~~g~v~~~d~~~~--~---~~~~~-------~~~~~pnGia~spdg~~lyva~~-------------~~~~I~~~~~~~~ 142 (268)
...+|.|+..+.+ . .+.+. ...+...+|+|+||| .|||+-. ..++|.|++.++.
T Consensus 80 ~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~ 158 (331)
T PF07995_consen 80 NDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGS 158 (331)
T ss_dssp EEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSS
T ss_pred cceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEeCCCCCcccccccccccceEEEecccCc
Confidence 2246666644322 1 22222 134555789999999 7999753 2368999998863
Q ss_pred C------C----CceeEEEeCCCCCCceEEcCC-CCEEEEEecCC
Q 024436 143 K------A----GTIEIVAQLPGFPDNIKRSPR-GGFWVGIHSRR 176 (268)
Q Consensus 143 ~------~----g~~~~~~~l~g~Pdgia~d~d-G~l~va~~~~~ 176 (268)
. . ...++++.---.|-++++|+. |+||+++.+..
T Consensus 159 ~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~ 203 (331)
T PF07995_consen 159 IPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPD 203 (331)
T ss_dssp B-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SS
T ss_pred CCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCC
Confidence 1 0 123556542125899999999 99999998765
No 38
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.29 E-value=0.00087 Score=62.10 Aligned_cols=129 Identities=17% Similarity=0.150 Sum_probs=76.3
Q ss_pred eEEECCCCCEEEE-EeC--CCeEEEEeCCCCeEEEEE---------EcCCCCCeeEEEeecCCcceEEEEeCCCCeEEEe
Q 024436 38 SLAFDALGEGPYT-GVS--DGRIIKWHQDQRRWLHFA---------RTSPNRNHISVILSGDKTGRLMKYDPATKQVTVL 105 (268)
Q Consensus 38 gia~~~dG~~l~~-~~~--~g~I~~~~~~g~~~~~~~---------~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~ 105 (268)
..+++|||+.++. ... ...|+.++.++.....+. ..+|++..+...........||.+|.++++.+.+
T Consensus 200 ~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~l 279 (427)
T PRK02889 200 SPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRL 279 (427)
T ss_pred cceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEEC
Confidence 5689999987654 333 356888887644222221 1234444443223334456799999887777766
Q ss_pred ecCCCCcceEEEccCCCEEEEEec--CCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEE
Q 024436 106 LGNLSFPNGVALSEDGNYILLAET--TSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFW 169 (268)
Q Consensus 106 ~~~~~~pnGia~spdg~~lyva~~--~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~ 169 (268)
...........|+|||++|+++.. ....|+.++.+++. .+.+....+.....++++||+..
T Consensus 280 t~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~---~~~lt~~g~~~~~~~~SpDG~~I 342 (427)
T PRK02889 280 TQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA---AQRVTFTGSYNTSPRISPDGKLL 342 (427)
T ss_pred CCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc---eEEEecCCCCcCceEECCCCCEE
Confidence 544334456789999998876532 23477777776532 22222111223457899999743
No 39
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.28 E-value=0.00013 Score=62.53 Aligned_cols=149 Identities=15% Similarity=0.138 Sum_probs=81.5
Q ss_pred CCCEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeC--CCCeE-----EEEEE-cC--CCC-----------Cee
Q 024436 22 TQGVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQ--DQRRW-----LHFAR-TS--PNR-----------NHI 80 (268)
Q Consensus 22 ~~~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~--~g~~~-----~~~~~-~~--~~~-----------~~~ 80 (268)
.+-++.+++.+..-||||++..+|.+++++-.+++++.++. +++.. ..+.. .. .+. +-+
T Consensus 53 G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L 132 (248)
T PF06977_consen 53 GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRL 132 (248)
T ss_dssp --EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEE
T ss_pred CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEE
Confidence 34678899998888999999988876665555788887764 32211 11110 11 111 111
Q ss_pred EEEeecCCcceEEEEeC--CCCeEEEee--------cCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEE
Q 024436 81 SVILSGDKTGRLMKYDP--ATKQVTVLL--------GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIV 150 (268)
Q Consensus 81 ~~~~~~~~~g~v~~~d~--~~~~~~~~~--------~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~ 150 (268)
... .......||.++. ......... ..+.-|.+++++|..++||+-...+++|..++.+|. ....
T Consensus 133 ~v~-kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~----~~~~ 207 (248)
T PF06977_consen 133 FVA-KERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGR----VVSS 207 (248)
T ss_dssp EEE-EESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT------EEEE
T ss_pred EEE-eCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCC----EEEE
Confidence 111 2234456777765 212222211 123457899999998899999889999999997763 2222
Q ss_pred EeCC----------CCCCceEEcCCCCEEEEEecC
Q 024436 151 AQLP----------GFPDNIKRSPRGGFWVGIHSR 175 (268)
Q Consensus 151 ~~l~----------g~Pdgia~d~dG~l~va~~~~ 175 (268)
..|. ..|-|||+|++|+|||+.-++
T Consensus 208 ~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpN 242 (248)
T PF06977_consen 208 LSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPN 242 (248)
T ss_dssp EE-STTGGG-SS---SEEEEEE-TT--EEEEETTT
T ss_pred EEeCCcccCcccccCCccEEEECCCCCEEEEcCCc
Confidence 2221 159999999999999988755
No 40
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.28 E-value=0.00098 Score=61.83 Aligned_cols=131 Identities=14% Similarity=0.090 Sum_probs=80.0
Q ss_pred ceEEECCCCCEEE-EEe--CCCeEEEEeCCCCeEEEEE---------EcCCCCCeeEEEeecCCcceEEEEeCCCCeEEE
Q 024436 37 ESLAFDALGEGPY-TGV--SDGRIIKWHQDQRRWLHFA---------RTSPNRNHISVILSGDKTGRLMKYDPATKQVTV 104 (268)
Q Consensus 37 ~gia~~~dG~~l~-~~~--~~g~I~~~~~~g~~~~~~~---------~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~ 104 (268)
...+++|||+.++ +.. .+..|+.++.++....... ..+|++.++.-.........||.+|.++++.+.
T Consensus 202 ~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~ 281 (429)
T PRK03629 202 MSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ 281 (429)
T ss_pred eeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE
Confidence 4789999998664 333 2457877776543222211 123444444322222334479999999888887
Q ss_pred eecCCCCcceEEEccCCCEEEEE-ecC-CcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEE
Q 024436 105 LLGNLSFPNGVALSEDGNYILLA-ETT-SCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWV 170 (268)
Q Consensus 105 ~~~~~~~pnGia~spdg~~lyva-~~~-~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~v 170 (268)
+...........|+|||+.|+++ +.. ..+|++++++++. .+.+....+.....++.|||+.++
T Consensus 282 lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~---~~~lt~~~~~~~~~~~SpDG~~Ia 346 (429)
T PRK03629 282 VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA---PQRITWEGSQNQDADVSSDGKFMV 346 (429)
T ss_pred ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC---eEEeecCCCCccCEEECCCCCEEE
Confidence 76654456689999999977554 432 3478888887632 233322222345678999997544
No 41
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=98.26 E-value=3e-05 Score=77.40 Aligned_cols=135 Identities=24% Similarity=0.332 Sum_probs=82.3
Q ss_pred CCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcCCC----C-------------CeeEEEee--------cC
Q 024436 33 AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPN----R-------------NHISVILS--------GD 87 (268)
Q Consensus 33 ~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~~----~-------------~~~~~~~~--------~~ 87 (268)
+..|.||+++.+|.+|+++ .-+|.++|.+|- +.......+. + .|-.++.- --
T Consensus 474 L~~PkGIa~dk~g~lYfaD--~t~IR~iD~~gi-Istlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vl 550 (1899)
T KOG4659|consen 474 LIFPKGIAFDKMGNLYFAD--GTRIRVIDTTGI-ISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVL 550 (1899)
T ss_pred eccCCceeEccCCcEEEec--ccEEEEeccCce-EEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEe
Confidence 6789999999999988773 245666677764 2333222111 0 01111100 11
Q ss_pred CcceEEEEeCCCCeEEEeec---------------------CCCCcceEEEccCCCEEEEEecCCcEEEEEE---ccCCC
Q 024436 88 KTGRLMKYDPATKQVTVLLG---------------------NLSFPNGVALSEDGNYILLAETTSCRILRYW---LKTSK 143 (268)
Q Consensus 88 ~~g~v~~~d~~~~~~~~~~~---------------------~~~~pnGia~spdg~~lyva~~~~~~I~~~~---~~~~~ 143 (268)
.++-|+++++. ++++...+ .+..|..|+++++| .|||+|+...+|-+.. .+|
T Consensus 551 d~nvvlrit~~-~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G-~lyvaEsD~rriNrvr~~~tdg-- 626 (1899)
T KOG4659|consen 551 DTNVVLRITVV-HRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDG-ALYVAESDGRRINRVRKLSTDG-- 626 (1899)
T ss_pred ecceEEEEccC-ccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCc-eEEEEeccchhhhheEEeccCc--
Confidence 34556677666 66654321 12356789999999 6999999887655543 333
Q ss_pred CCceeEEEe-----------------C---------CCCCCceEEcCCCCEEEEEecCC
Q 024436 144 AGTIEIVAQ-----------------L---------PGFPDNIKRSPRGGFWVGIHSRR 176 (268)
Q Consensus 144 ~g~~~~~~~-----------------l---------~g~Pdgia~d~dG~l~va~~~~~ 176 (268)
+...++. + -.-|..+|+.|||.+++|+.++-
T Consensus 627 --~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~v~IAD~gN~ 683 (1899)
T KOG4659|consen 627 --TISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGDVIIADSGNS 683 (1899)
T ss_pred --eEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCcEEEecCCch
Confidence 1111111 0 02499999999999999998875
No 42
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.25 E-value=0.00016 Score=67.43 Aligned_cols=133 Identities=15% Similarity=0.180 Sum_probs=79.1
Q ss_pred ceEEECCCCCEEEE-EeCCC--eEEEEeCCCCeEEEEEE---------cCCCCCeeEEEeecCCcceEEEEeCCCCeEEE
Q 024436 37 ESLAFDALGEGPYT-GVSDG--RIIKWHQDQRRWLHFAR---------TSPNRNHISVILSGDKTGRLMKYDPATKQVTV 104 (268)
Q Consensus 37 ~gia~~~dG~~l~~-~~~~g--~I~~~~~~g~~~~~~~~---------~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~ 104 (268)
...+++|||+.++. ...+| +|+.++.++........ .++++.++.-.........||++|.++++.+.
T Consensus 265 ~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~ 344 (448)
T PRK04792 265 GAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR 344 (448)
T ss_pred CCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE
Confidence 35789999996654 44444 58888876553332211 13344443322222344589999998888776
Q ss_pred eecCCCCcceEEEccCCCEEEEEecCC--cEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCC-EEEEEe
Q 024436 105 LLGNLSFPNGVALSEDGNYILLAETTS--CRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG-FWVGIH 173 (268)
Q Consensus 105 ~~~~~~~pnGia~spdg~~lyva~~~~--~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~-l~va~~ 173 (268)
+........+.+|+|||+.||++.... .+|++++++++. ...+... ..-....+++||+ ++.+..
T Consensus 345 Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~---~~~lt~~-~~d~~ps~spdG~~I~~~~~ 412 (448)
T PRK04792 345 LTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGA---MQVLTST-RLDESPSVAPNGTMVIYSTT 412 (448)
T ss_pred EecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCC---eEEccCC-CCCCCceECCCCCEEEEEEe
Confidence 643333345679999999998876544 378888887632 2222211 1122347889997 444443
No 43
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.24 E-value=0.00074 Score=62.65 Aligned_cols=81 Identities=16% Similarity=0.176 Sum_probs=53.2
Q ss_pred CcceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecC--CcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCC
Q 024436 88 KTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETT--SCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPR 165 (268)
Q Consensus 88 ~~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~--~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~d 165 (268)
....||.+|.++++.+.+...-......+|+|||+.|+++... ...|++++++++. ...+...++.....++++|
T Consensus 224 g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~---~~~Lt~~~~~~~~~~~spD 300 (435)
T PRK05137 224 GRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGT---TTRLTDSPAIDTSPSYSPD 300 (435)
T ss_pred CCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCc---eEEccCCCCccCceeEcCC
Confidence 4578999999888776665332333478999999988776443 3579999987632 2333222333456788999
Q ss_pred CC-EEEE
Q 024436 166 GG-FWVG 171 (268)
Q Consensus 166 G~-l~va 171 (268)
|+ ++.+
T Consensus 301 G~~i~f~ 307 (435)
T PRK05137 301 GSQIVFE 307 (435)
T ss_pred CCEEEEE
Confidence 97 4433
No 44
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.23 E-value=0.0001 Score=65.18 Aligned_cols=101 Identities=21% Similarity=0.201 Sum_probs=68.8
Q ss_pred cceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCC---------cEEEEEEccCCCCCceeEEE--eCC---
Q 024436 89 TGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTS---------CRILRYWLKTSKAGTIEIVA--QLP--- 154 (268)
Q Consensus 89 ~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~---------~~I~~~~~~~~~~g~~~~~~--~l~--- 154 (268)
.++++.+|.+++++.-..+....+| ++++|||+.+|++++.= .-|..||..+ ..... .+|
T Consensus 16 ~~rv~viD~d~~k~lGmi~~g~~~~-~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~T-----L~~~~EI~iP~k~ 89 (342)
T PF06433_consen 16 TSRVYVIDADSGKLLGMIDTGFLGN-VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQT-----LSPTGEIEIPPKP 89 (342)
T ss_dssp SEEEEEEETTTTEEEEEEEEESSEE-EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTT-----TEEEEEEEETTS-
T ss_pred cceEEEEECCCCcEEEEeecccCCc-eeECCCCCEEEEEEEEEeccccccceeEEEEEecCc-----CcccceEecCCcc
Confidence 4799999999888776665555566 88999999999998732 2466677653 12211 123
Q ss_pred -----CCCCceEEcCCCC-EEEEEecCCCcceeeeEe-eCccceeeeecccc
Q 024436 155 -----GFPDNIKRSPRGG-FWVGIHSRRKGISKLVLS-FPWIGNVLIKLPID 199 (268)
Q Consensus 155 -----g~Pdgia~d~dG~-l~va~~~~~~~~~~~v~~-~~~~g~~l~~i~~~ 199 (268)
.++..+++..||+ +||.+...... |.+ ....++++..++.|
T Consensus 90 R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S----VtVVDl~~~kvv~ei~~P 137 (342)
T PF06433_consen 90 RAQVVPYKNMFALSADGKFLYVQNFTPATS----VTVVDLAAKKVVGEIDTP 137 (342)
T ss_dssp B--BS--GGGEEE-TTSSEEEEEEESSSEE----EEEEETTTTEEEEEEEGT
T ss_pred hheecccccceEEccCCcEEEEEccCCCCe----EEEEECCCCceeeeecCC
Confidence 2567888999997 78888776543 433 35778999999887
No 45
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=98.20 E-value=2.2e-06 Score=47.72 Aligned_cols=28 Identities=32% Similarity=0.736 Sum_probs=25.1
Q ss_pred CCCcceEEEccCCCEEEEEecCCcEEEEE
Q 024436 109 LSFPNGVALSEDGNYILLAETTSCRILRY 137 (268)
Q Consensus 109 ~~~pnGia~spdg~~lyva~~~~~~I~~~ 137 (268)
+..|.||+++++| .|||+|+.+++|++|
T Consensus 1 f~~P~gvav~~~g-~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 1 FNYPHGVAVDSDG-NIYVADSGNHRVQVF 28 (28)
T ss_dssp BSSEEEEEEETTS-EEEEEECCCTEEEEE
T ss_pred CcCCcEEEEeCCC-CEEEEECCCCEEEEC
Confidence 3579999999888 599999999999986
No 46
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.19 E-value=0.0031 Score=58.37 Aligned_cols=128 Identities=16% Similarity=0.145 Sum_probs=77.9
Q ss_pred eEEECCCCC--EEEEEeC--CCeEEEEeCCCCeEEEEE---------EcCCCCCeeEEEeecCCcceEEEEeCCCCeEEE
Q 024436 38 SLAFDALGE--GPYTGVS--DGRIIKWHQDQRRWLHFA---------RTSPNRNHISVILSGDKTGRLMKYDPATKQVTV 104 (268)
Q Consensus 38 gia~~~dG~--~l~~~~~--~g~I~~~~~~g~~~~~~~---------~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~ 104 (268)
...++|||+ ++|+... +..|+.++..+.....+. ..+|++..+.-......+..||.+|.++++.+.
T Consensus 192 ~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~ 271 (419)
T PRK04043 192 FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQ 271 (419)
T ss_pred eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEE
Confidence 568899997 4445554 467888887543222221 224555444333333456789999988787777
Q ss_pred eecCCCCcceEEEccCCCEEEEEec--CCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEE
Q 024436 105 LLGNLSFPNGVALSEDGNYILLAET--TSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWV 170 (268)
Q Consensus 105 ~~~~~~~pnGia~spdg~~lyva~~--~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~v 170 (268)
+...-..-....|+|||+.||++.. ....|++++++++. .+.+... +. .+..++|||+..+
T Consensus 272 LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~---~~rlt~~-g~-~~~~~SPDG~~Ia 334 (419)
T PRK04043 272 ITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGS---VEQVVFH-GK-NNSSVSTYKNYIV 334 (419)
T ss_pred cccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCC---eEeCccC-CC-cCceECCCCCEEE
Confidence 6543322234589999998888753 23389999998643 2222211 22 2358999998433
No 47
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.16 E-value=0.0031 Score=58.31 Aligned_cols=130 Identities=17% Similarity=0.220 Sum_probs=78.7
Q ss_pred ceEEECCCCCEE-EEEeCC--CeEEEEeCCCCeEEEEE---------EcCCCCCeeEEEeecCCcceEEEEeCCCCeEEE
Q 024436 37 ESLAFDALGEGP-YTGVSD--GRIIKWHQDQRRWLHFA---------RTSPNRNHISVILSGDKTGRLMKYDPATKQVTV 104 (268)
Q Consensus 37 ~gia~~~dG~~l-~~~~~~--g~I~~~~~~g~~~~~~~---------~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~ 104 (268)
...+++|||+.+ |+...+ .+|+.++.++.....+. ..+|++.++.-.........||.+|.++++.+.
T Consensus 202 ~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~ 281 (430)
T PRK00178 202 LSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR 281 (430)
T ss_pred eeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEE
Confidence 566899999866 444433 46888887643222211 123444444322233344589999999888877
Q ss_pred eecCCCCcceEEEccCCCEEEEEecC--CcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEE
Q 024436 105 LLGNLSFPNGVALSEDGNYILLAETT--SCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFW 169 (268)
Q Consensus 105 ~~~~~~~pnGia~spdg~~lyva~~~--~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~ 169 (268)
+...........|+|||+.||++... ...|++++++++. .+.+..........++++||+..
T Consensus 282 lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~---~~~lt~~~~~~~~~~~Spdg~~i 345 (430)
T PRK00178 282 VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR---AERVTFVGNYNARPRLSADGKTL 345 (430)
T ss_pred cccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC---EEEeecCCCCccceEECCCCCEE
Confidence 76544445568999999988776432 3479998887532 22222111233456889999743
No 48
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=98.16 E-value=0.0014 Score=56.93 Aligned_cols=211 Identities=16% Similarity=0.158 Sum_probs=123.5
Q ss_pred EecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCC-----CCe--EEEEEEcCCC-----C----------Ce------
Q 024436 28 YQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQD-----QRR--WLHFARTSPN-----R----------NH------ 79 (268)
Q Consensus 28 i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~-----g~~--~~~~~~~~~~-----~----------~~------ 79 (268)
.--+.+..|+||++.|.|.+++++..++....++.+ |.. +....-..++ . .|
T Consensus 17 ~tDp~L~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g 96 (336)
T TIGR03118 17 IVDPGLRNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEG 96 (336)
T ss_pred ccCccccccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCC
Confidence 344568899999999999988888888888777765 321 1111100000 0 01
Q ss_pred ---eEEEeecCCcceEEEEeCCCCeE-----EEeecC---CCCcceEEEccC--CCEEEEEecCCcEEEEEEccCCCCCc
Q 024436 80 ---ISVILSGDKTGRLMKYDPATKQV-----TVLLGN---LSFPNGVALSED--GNYILLAETTSCRILRYWLKTSKAGT 146 (268)
Q Consensus 80 ---~~~~~~~~~~g~v~~~d~~~~~~-----~~~~~~---~~~pnGia~spd--g~~lyva~~~~~~I~~~~~~~~~~g~ 146 (268)
...++.....|.|--|.|.-+.. ..+.+. ...=.|+|+... +.+||.+|..+++|-+||-.-.++..
T Consensus 97 ~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~ 176 (336)
T TIGR03118 97 ITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPL 176 (336)
T ss_pred cccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccC
Confidence 01122334567777666542211 012221 122247777743 67999999999999999755322211
Q ss_pred eeEEEe--CCC--CCCceEEcCCCCEEEEEecCCCcceeeeEeeCccceeeeeccccceeeeeeccccCCCcEEEEEECC
Q 024436 147 IEIVAQ--LPG--FPDNIKRSPRGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISE 222 (268)
Q Consensus 147 ~~~~~~--l~g--~Pdgia~d~dG~l~va~~~~~~~~~~~v~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (268)
...|.+ +|. -|-||.-- .|+|||+.-..... ++ ..++ ..-. +.+-+++.
T Consensus 177 ~g~F~DP~iPagyAPFnIqni-g~~lyVtYA~qd~~-----------~~--d~v~------------G~G~-G~VdvFd~ 229 (336)
T TIGR03118 177 PGSFIDPALPAGYAPFNVQNL-GGTLYVTYAQQDAD-----------RN--DEVA------------GAGL-GYVNVFTL 229 (336)
T ss_pred CCCccCCCCCCCCCCcceEEE-CCeEEEEEEecCCc-----------cc--cccc------------CCCc-ceEEEEcC
Confidence 122433 342 47788654 47899976543310 10 0111 1122 67889999
Q ss_pred CCCEEEEEEcCCCCceeceEEEEE-------eCCEEEEeeCCCCeEEEEeCC
Q 024436 223 QGNVLEILEEIGRKMWRSISEVEE-------KDGNLWIGSVNMPYAGLYNYS 267 (268)
Q Consensus 223 ~G~~~~~~~~~~g~~~~~~s~~~~-------~~g~Lyv~s~~~~~v~~~~~~ 267 (268)
+|+.++.+... ..+..+=+++. ..+.|+||++.+.+|..+|..
T Consensus 230 ~G~l~~r~as~--g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~ 279 (336)
T TIGR03118 230 NGQLLRRVASS--GRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQ 279 (336)
T ss_pred CCcEEEEeccC--CcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCC
Confidence 99999988653 33444434332 348899999999999999854
No 49
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.15 E-value=0.0032 Score=52.54 Aligned_cols=136 Identities=24% Similarity=0.337 Sum_probs=84.6
Q ss_pred CCcceEEECCCCCEEEEEeCCCeEEEEeCCCCe-EEEEEE---------cCCCCCeeEEEeecCCcceEEEEeCCCCe-E
Q 024436 34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRR-WLHFAR---------TSPNRNHISVILSGDKTGRLMKYDPATKQ-V 102 (268)
Q Consensus 34 ~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~-~~~~~~---------~~~~~~~~~~~~~~~~~g~v~~~d~~~~~-~ 102 (268)
....+++++|++++++++..+|.|..++.+... ...+.. ..++.+++ ......+.++.++..+++ .
T Consensus 10 ~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l---~~~~~~~~i~i~~~~~~~~~ 86 (289)
T cd00200 10 GGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYL---ASGSSDKTIRLWDLETGECV 86 (289)
T ss_pred CCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEE---EEEcCCCeEEEEEcCcccce
Confidence 467889999999999988889999888765431 111110 01121122 233446788888887543 3
Q ss_pred EEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEecC
Q 024436 103 TVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSR 175 (268)
Q Consensus 103 ~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~~ 175 (268)
..+.........+.++++++ ++++....+.|..|++.... ....+......+..+++++++.++++....
T Consensus 87 ~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 156 (289)
T cd00200 87 RTLTGHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWDVETGK--CLTTLRGHTDWVNSVAFSPDGTFVASSSQD 156 (289)
T ss_pred EEEeccCCcEEEEEEcCCCC-EEEEecCCCeEEEEECCCcE--EEEEeccCCCcEEEEEEcCcCCEEEEEcCC
Confidence 33443444678899999976 55565567899999987321 112222122346788999988877766533
No 50
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.10 E-value=0.00049 Score=63.86 Aligned_cols=127 Identities=14% Similarity=0.157 Sum_probs=76.0
Q ss_pred eEEECCCCCEEEE-EeCC--CeEEEEeCCCCeEEEEEE---------cCCCCCeeEEEeecCCcceEEEEeCCCCeEEEe
Q 024436 38 SLAFDALGEGPYT-GVSD--GRIIKWHQDQRRWLHFAR---------TSPNRNHISVILSGDKTGRLMKYDPATKQVTVL 105 (268)
Q Consensus 38 gia~~~dG~~l~~-~~~~--g~I~~~~~~g~~~~~~~~---------~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~ 105 (268)
.++++|||+.++. ...+ ..|+.++.++.....+.. .++++.++.-.........||.++.++++.+.+
T Consensus 252 ~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~l 331 (433)
T PRK04922 252 APSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERL 331 (433)
T ss_pred CceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe
Confidence 5789999986653 3333 469988876543332211 123333332111112234699999877777666
Q ss_pred ecCCCCcceEEEccCCCEEEEEecCC--cEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCE
Q 024436 106 LGNLSFPNGVALSEDGNYILLAETTS--CRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGF 168 (268)
Q Consensus 106 ~~~~~~pnGia~spdg~~lyva~~~~--~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l 168 (268)
.........++|+|||+.|+++.... .+|+.++++++. ...+... .......+.+||+.
T Consensus 332 t~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~---~~~Lt~~-~~~~~p~~spdG~~ 392 (433)
T PRK04922 332 TFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGS---VRTLTPG-SLDESPSFAPNGSM 392 (433)
T ss_pred ecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCC---eEECCCC-CCCCCceECCCCCE
Confidence 54334455789999999998875433 379999987532 2322221 12345688999973
No 51
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.09 E-value=0.0043 Score=56.84 Aligned_cols=132 Identities=20% Similarity=0.140 Sum_probs=77.6
Q ss_pred ceEEECCCCCEEEEEe-C--CCeEEEEeCCCCeEEEEE---------EcCCCCCeeEEEeecCCcceEEEEeCCCCeEEE
Q 024436 37 ESLAFDALGEGPYTGV-S--DGRIIKWHQDQRRWLHFA---------RTSPNRNHISVILSGDKTGRLMKYDPATKQVTV 104 (268)
Q Consensus 37 ~gia~~~dG~~l~~~~-~--~g~I~~~~~~g~~~~~~~---------~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~ 104 (268)
...+++|||+.++... . ...|+.++..+....... ..++++..+.-.........||.+|.++++.+.
T Consensus 193 ~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~ 272 (417)
T TIGR02800 193 LSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTR 272 (417)
T ss_pred ecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEE
Confidence 3457899999776543 2 357888886543222221 113343333222232344579999998777776
Q ss_pred eecCCCCcceEEEccCCCEEEEEec--CCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEE
Q 024436 105 LLGNLSFPNGVALSEDGNYILLAET--TSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVG 171 (268)
Q Consensus 105 ~~~~~~~pnGia~spdg~~lyva~~--~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va 171 (268)
+...........|+|||++|+++.. ....|++++++++. ...+..........+++++|+.++.
T Consensus 273 l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~---~~~l~~~~~~~~~~~~spdg~~i~~ 338 (417)
T TIGR02800 273 LTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE---VRRLTFRGGYNASPSWSPDGDLIAF 338 (417)
T ss_pred CCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC---EEEeecCCCCccCeEECCCCCEEEE
Confidence 6544333446789999998866543 23479999887532 2222222234557789999975443
No 52
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=98.06 E-value=2e-05 Score=56.39 Aligned_cols=60 Identities=23% Similarity=0.413 Sum_probs=42.9
Q ss_pred ceEEEccCCCEEEEEec-----------------CCcEEEEEEccCCCCCceeEEEe-CCCCCCceEEcCCCC-EEEEEe
Q 024436 113 NGVALSEDGNYILLAET-----------------TSCRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSPRGG-FWVGIH 173 (268)
Q Consensus 113 nGia~spdg~~lyva~~-----------------~~~~I~~~~~~~~~~g~~~~~~~-l~g~Pdgia~d~dG~-l~va~~ 173 (268)
|++++++++..+|+||+ .++|+++|++.+ ++.+++.+ |. +|+|+++++|+. ++|++.
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t---~~~~vl~~~L~-fpNGVals~d~~~vlv~Et 76 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPST---KETTVLLDGLY-FPNGVALSPDESFVLVAET 76 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTT---TEEEEEEEEES-SEEEEEE-TTSSEEEEEEG
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCC---CeEEEehhCCC-ccCeEEEcCCCCEEEEEec
Confidence 78999999557999998 347999999975 33556655 54 799999999997 777887
Q ss_pred cCC
Q 024436 174 SRR 176 (268)
Q Consensus 174 ~~~ 176 (268)
...
T Consensus 77 ~~~ 79 (89)
T PF03088_consen 77 GRY 79 (89)
T ss_dssp GGT
T ss_pred cCc
Confidence 665
No 53
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=98.06 E-value=0.0003 Score=70.61 Aligned_cols=136 Identities=18% Similarity=0.218 Sum_probs=78.2
Q ss_pred CCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcCCCC---Ce-e-------EEEeecCCcceEEEEeCCC--
Q 024436 33 AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNR---NH-I-------SVILSGDKTGRLMKYDPAT-- 99 (268)
Q Consensus 33 ~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~~~---~~-~-------~~~~~~~~~g~v~~~d~~~-- 99 (268)
+-.|..+|..|||.+++-+. +.|.|+.++|+. ......+..+ .| + ..++++....+|||+..-.
T Consensus 364 L~aPvala~a~DGSl~VGDf--NyIRRI~~dg~v-~tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~ 440 (1899)
T KOG4659|consen 364 LFAPVALAYAPDGSLIVGDF--NYIRRISQDGQV-STILTLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQ 440 (1899)
T ss_pred eeceeeEEEcCCCcEEEccc--hheeeecCCCce-EEEEEecCCCccceeEEEecCcCceEEecCCCcceEEEeccCCcc
Confidence 45789999999999554322 578888999984 3322222111 11 1 1122333444566552211
Q ss_pred ---CeEEEee---------------------cCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCC--CC-Cc----ee
Q 024436 100 ---KQVTVLL---------------------GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS--KA-GT----IE 148 (268)
Q Consensus 100 ---~~~~~~~---------------------~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~--~~-g~----~~ 148 (268)
+..++++ ..+.+|.||+|+.+| .||++|. -+|.++|.+|- ++ |+ ..
T Consensus 441 d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk~g-~lYfaD~--t~IR~iD~~giIstlig~~~~~~~ 517 (1899)
T KOG4659|consen 441 DSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFDKMG-NLYFADG--TRIRVIDTTGIISTLIGTTPDQHP 517 (1899)
T ss_pred ccccCeeEEeccCcCccccccccCcchhcccceeccCCceeEccCC-cEEEecc--cEEEEeccCceEEEeccCCCCccC
Confidence 1122221 235799999999999 5999986 47888887651 00 00 00
Q ss_pred EE-Ee----CC----CCCCceEEcC-CCCEEEEEec
Q 024436 149 IV-AQ----LP----GFPDNIKRSP-RGGFWVGIHS 174 (268)
Q Consensus 149 ~~-~~----l~----g~Pdgia~d~-dG~l~va~~~ 174 (268)
+. ++ +. -.|..+|+|| |+.|||-+..
T Consensus 518 p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~n 553 (1899)
T KOG4659|consen 518 PRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDTN 553 (1899)
T ss_pred ccccccccchhheeeecccceeecCCCCeEEEeecc
Confidence 00 00 00 2699999999 6678886643
No 54
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.04 E-value=0.0038 Score=57.88 Aligned_cols=78 Identities=17% Similarity=0.068 Sum_probs=51.6
Q ss_pred CcceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecC--CcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCC
Q 024436 88 KTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETT--SCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPR 165 (268)
Q Consensus 88 ~~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~--~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~d 165 (268)
....|+.++.++|+.+.+...-.....++|+|||+.|+++... ...|+.++++++. ...+...+......++.||
T Consensus 221 g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~---~~~lt~~~~~~~~~~wSPD 297 (429)
T PRK03629 221 GRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ---IRQVTDGRSNNTEPTWFPD 297 (429)
T ss_pred CCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCC---EEEccCCCCCcCceEECCC
Confidence 4457899998888776665332233468999999999887443 3479999987532 3333222233457789999
Q ss_pred CCE
Q 024436 166 GGF 168 (268)
Q Consensus 166 G~l 168 (268)
|+.
T Consensus 298 G~~ 300 (429)
T PRK03629 298 SQN 300 (429)
T ss_pred CCE
Confidence 973
No 55
>PRK02889 tolB translocation protein TolB; Provisional
Probab=97.99 E-value=0.0047 Score=57.22 Aligned_cols=78 Identities=22% Similarity=0.138 Sum_probs=50.0
Q ss_pred CcceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecC--CcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCC
Q 024436 88 KTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETT--SCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPR 165 (268)
Q Consensus 88 ~~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~--~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~d 165 (268)
....||.+|.++++.+.+...-......+|+|||+.|+++-.. ..+|+.++.+++. ...+....+.....++++|
T Consensus 218 ~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~---~~~lt~~~~~~~~~~wSpD 294 (427)
T PRK02889 218 KKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG---LRRLTQSSGIDTEPFFSPD 294 (427)
T ss_pred CCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC---cEECCCCCCCCcCeEEcCC
Confidence 3457999999888776664322233478999999988875433 3478888876532 2222222233445689999
Q ss_pred CCE
Q 024436 166 GGF 168 (268)
Q Consensus 166 G~l 168 (268)
|+.
T Consensus 295 G~~ 297 (427)
T PRK02889 295 GRS 297 (427)
T ss_pred CCE
Confidence 973
No 56
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=97.98 E-value=0.0036 Score=52.24 Aligned_cols=136 Identities=21% Similarity=0.227 Sum_probs=85.4
Q ss_pred CcceEEECCCCCEEEEEeCCCeEEEEeCC-CCeEEEEEE---------cCCCCCeeEEEeecCCcceEEEEeCCCCeEEE
Q 024436 35 GPESLAFDALGEGPYTGVSDGRIIKWHQD-QRRWLHFAR---------TSPNRNHISVILSGDKTGRLMKYDPATKQVTV 104 (268)
Q Consensus 35 ~P~gia~~~dG~~l~~~~~~g~I~~~~~~-g~~~~~~~~---------~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~ 104 (268)
...++.+.+++++++++..++.|..++.. ++....+.. ..+...++ ......+.|..+|..+++...
T Consensus 95 ~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l---~~~~~~~~i~i~d~~~~~~~~ 171 (289)
T cd00200 95 YVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFV---ASSSQDGTIKLWDLRTGKCVA 171 (289)
T ss_pred cEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEE---EEEcCCCcEEEEEccccccce
Confidence 67889999999978777779999999876 332222210 01111222 122346788888887554433
Q ss_pred e-ecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEecCC
Q 024436 105 L-LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRR 176 (268)
Q Consensus 105 ~-~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~~~ 176 (268)
. .......+.++++|+++.++++.. .+.|..|++..... ...+....+....+++++++.++++....+
T Consensus 172 ~~~~~~~~i~~~~~~~~~~~l~~~~~-~~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 241 (289)
T cd00200 172 TLTGHTGEVNSVAFSPDGEKLLSSSS-DGTIKLWDLSTGKC--LGTLRGHENGVNSVAFSPDGYLLASGSEDG 241 (289)
T ss_pred eEecCccccceEEECCCcCEEEEecC-CCcEEEEECCCCce--ecchhhcCCceEEEEEcCCCcEEEEEcCCC
Confidence 3 333335789999999987877765 78999999874211 111211223567889999988877766333
No 57
>PRK01742 tolB translocation protein TolB; Provisional
Probab=97.97 E-value=0.0053 Score=56.88 Aligned_cols=131 Identities=17% Similarity=0.101 Sum_probs=77.5
Q ss_pred cceEEECCCCCEEEE-EeC--CCeEEEEeCCCCeEEEEE---------EcCCCCCeeEEEeecCCcceEEEEeCCCCeEE
Q 024436 36 PESLAFDALGEGPYT-GVS--DGRIIKWHQDQRRWLHFA---------RTSPNRNHISVILSGDKTGRLMKYDPATKQVT 103 (268)
Q Consensus 36 P~gia~~~dG~~l~~-~~~--~g~I~~~~~~g~~~~~~~---------~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~ 103 (268)
-..++++|||+.++. ... +.+|+.++..+.....+. ..+|++.++.......+.-.||.+|.++++.+
T Consensus 206 v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~ 285 (429)
T PRK01742 206 LMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPS 285 (429)
T ss_pred cccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeE
Confidence 456799999987654 333 347888887543211111 11344444432222334447999998878777
Q ss_pred EeecCCCCcceEEEccCCCEEEEEecC--CcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEE
Q 024436 104 VLLGNLSFPNGVALSEDGNYILLAETT--SCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGI 172 (268)
Q Consensus 104 ~~~~~~~~pnGia~spdg~~lyva~~~--~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~ 172 (268)
.+..+.......+|+|||+.|+++... .-+|+.++.++.. ...+ ...+ ...++.|||+..+..
T Consensus 286 ~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~---~~~l-~~~~--~~~~~SpDG~~ia~~ 350 (429)
T PRK01742 286 QLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG---ASLV-GGRG--YSAQISADGKTLVMI 350 (429)
T ss_pred eeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC---eEEe-cCCC--CCccCCCCCCEEEEE
Confidence 776554556689999999987766433 3466766665422 2222 2112 346788999754433
No 58
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.96 E-value=0.0029 Score=60.60 Aligned_cols=153 Identities=19% Similarity=0.321 Sum_probs=103.3
Q ss_pred hhhcCC--CEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCC-CeEEEEEEcCCCC-Ce--------eEEEee
Q 024436 18 INSSTQ--GVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQ-RRWLHFARTSPNR-NH--------ISVILS 85 (268)
Q Consensus 18 ~~~~~~--~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g-~~~~~~~~~~~~~-~~--------~~~~~~ 85 (268)
+|.++. |+.++.-+ ..+-.++.|...|+.+++..-||+|..||... +.+..|. .|.+ ++ ...++.
T Consensus 376 vWn~~SgfC~vTFteH-ts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft--~P~p~QfscvavD~sGelV~A 452 (893)
T KOG0291|consen 376 VWNTQSGFCFVTFTEH-TSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFT--SPEPIQFSCVAVDPSGELVCA 452 (893)
T ss_pred EEeccCceEEEEeccC-CCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeec--CCCceeeeEEEEcCCCCEEEe
Confidence 355555 78888877 46789999999999999999999999998653 2223321 1111 00 111223
Q ss_pred cCCcc-eEEEEeCCCCeEEEeecCCCCc-ceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEc
Q 024436 86 GDKTG-RLMKYDPATKQVTVLLGNLSFP-NGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRS 163 (268)
Q Consensus 86 ~~~~g-~v~~~d~~~~~~~~~~~~~~~p-nGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d 163 (268)
+..+. .|+.++-+||++..+..+-..| .|+.|+|+|+ +.++.++...|..|++=.. .++.+.+. +....-++++.
T Consensus 453 G~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~-~LaS~SWDkTVRiW~if~s-~~~vEtl~-i~sdvl~vsfr 529 (893)
T KOG0291|consen 453 GAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGS-LLASGSWDKTVRIWDIFSS-SGTVETLE-IRSDVLAVSFR 529 (893)
T ss_pred eccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccC-eEEeccccceEEEEEeecc-CceeeeEe-eccceeEEEEc
Confidence 33333 6888999999877666665555 6899999998 5568889999999998532 12344432 33345688889
Q ss_pred CCCC-EEEEEecCC
Q 024436 164 PRGG-FWVGIHSRR 176 (268)
Q Consensus 164 ~dG~-l~va~~~~~ 176 (268)
|||. |.|+.-.+.
T Consensus 530 PdG~elaVaTldgq 543 (893)
T KOG0291|consen 530 PDGKELAVATLDGQ 543 (893)
T ss_pred CCCCeEEEEEecce
Confidence 9995 777776653
No 59
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=97.96 E-value=0.0018 Score=59.40 Aligned_cols=136 Identities=15% Similarity=0.155 Sum_probs=81.8
Q ss_pred cceEEECCCCCEEEE-EeC--CCeEEEEeCCCCeEEEEEE---------cCCCCCeeEEEeecCCcceEEEEeCCCCeEE
Q 024436 36 PESLAFDALGEGPYT-GVS--DGRIIKWHQDQRRWLHFAR---------TSPNRNHISVILSGDKTGRLMKYDPATKQVT 103 (268)
Q Consensus 36 P~gia~~~dG~~l~~-~~~--~g~I~~~~~~g~~~~~~~~---------~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~ 103 (268)
...++++|||+.++. ... +..|+.++.++.....+.. ..+++.++.-.........||.+|.++++.+
T Consensus 236 ~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~ 315 (417)
T TIGR02800 236 NGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR 315 (417)
T ss_pred ccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence 346789999986654 333 3468888876543222211 1223333322212223447999999878777
Q ss_pred EeecCCCCcceEEEccCCCEEEEEecCC--cEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCC-EEEEEecC
Q 024436 104 VLLGNLSFPNGVALSEDGNYILLAETTS--CRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG-FWVGIHSR 175 (268)
Q Consensus 104 ~~~~~~~~pnGia~spdg~~lyva~~~~--~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~-l~va~~~~ 175 (268)
.+.........++++|||+.|+++.... .+|+.++++++ ....+.. .......++.+||+ |+.+....
T Consensus 316 ~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~---~~~~l~~-~~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 316 RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGG---GERVLTD-TGLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred EeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCC---CeEEccC-CCCCCCceECCCCCEEEEEEeCC
Confidence 7765556667889999999998887643 37888888752 2232222 12334568888986 44444433
No 60
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.95 E-value=0.00072 Score=64.39 Aligned_cols=86 Identities=14% Similarity=-0.007 Sum_probs=49.7
Q ss_pred EEEecCCCCCcceEEEC--CCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcCCCCCeeEEEeecCCcceEEEEeCCCCeEE
Q 024436 26 VQYQIEGAIGPESLAFD--ALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRNHISVILSGDKTGRLMKYDPATKQVT 103 (268)
Q Consensus 26 ~~i~~~~~~~P~gia~~--~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~ 103 (268)
+.+.+|..++.+|+++. |.-. |+......+| -+.+||+.+. +. ..-.+.+..+|.++.++.
T Consensus 166 ~i~~iPn~~~~Hg~~~~~~p~t~-yv~~~~e~~~-PlpnDGk~l~-------------~~--~ey~~~vSvID~etmeV~ 228 (635)
T PRK02888 166 KITELPNVQGIHGLRPQKIPRTG-YVFCNGEFRI-PLPNDGKDLD-------------DP--KKYRSLFTAVDAETMEVA 228 (635)
T ss_pred eeEeCCCccCccccCccccCCcc-EEEeCccccc-ccCCCCCEee-------------cc--cceeEEEEEEECccceEE
Confidence 34456666778888887 4444 3332222222 2344554211 11 123456778888866553
Q ss_pred EeecCCCCcceEEEccCCCEEEEEe
Q 024436 104 VLLGNLSFPNGVALSEDGNYILLAE 128 (268)
Q Consensus 104 ~~~~~~~~pnGia~spdg~~lyva~ 128 (268)
....-...|.+++++|||+++|++.
T Consensus 229 ~qV~Vdgnpd~v~~spdGk~afvTs 253 (635)
T PRK02888 229 WQVMVDGNLDNVDTDYDGKYAFSTC 253 (635)
T ss_pred EEEEeCCCcccceECCCCCEEEEec
Confidence 3322334788999999999999985
No 61
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=0.01 Score=51.38 Aligned_cols=223 Identities=10% Similarity=0.086 Sum_probs=124.7
Q ss_pred CCcceEEECCCCCEEEEEeCCCeEEEEeC-CCCeEEEEEEc--CCCC-Cee-----EEEeecCCcceEEEEeCCCCe-EE
Q 024436 34 IGPESLAFDALGEGPYTGVSDGRIIKWHQ-DQRRWLHFART--SPNR-NHI-----SVILSGDKTGRLMKYDPATKQ-VT 103 (268)
Q Consensus 34 ~~P~gia~~~dG~~l~~~~~~g~I~~~~~-~g~~~~~~~~~--~~~~-~~~-----~~~~~~~~~g~v~~~d~~~~~-~~ 103 (268)
..++.+.++++|..+.+..+|+.+..++. +|+....+... +.+. .|. ....+...+..|..++..+.+ ++
T Consensus 15 ~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylR 94 (311)
T KOG1446|consen 15 GKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLR 94 (311)
T ss_pred CceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEE
Confidence 47999999999999999888889888875 55543332211 1110 000 011111233455555554444 44
Q ss_pred EeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEecCCCcceeee
Q 024436 104 VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKLV 183 (268)
Q Consensus 104 ~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~~~~~~~~~v 183 (268)
...++-..-|.|..+|-++ .|++.+..+.|.-||+...+ -.....+.+ +--.|+||+|-++++..+... |
T Consensus 95 YF~GH~~~V~sL~~sP~~d-~FlS~S~D~tvrLWDlR~~~---cqg~l~~~~-~pi~AfDp~GLifA~~~~~~~-----I 164 (311)
T KOG1446|consen 95 YFPGHKKRVNSLSVSPKDD-TFLSSSLDKTVRLWDLRVKK---CQGLLNLSG-RPIAAFDPEGLIFALANGSEL-----I 164 (311)
T ss_pred EcCCCCceEEEEEecCCCC-eEEecccCCeEEeeEecCCC---CceEEecCC-CcceeECCCCcEEEEecCCCe-----E
Confidence 4556666789999999986 78899999999999987322 222233443 447799999988877766532 3
Q ss_pred EeeC---ccceeeeecccc--c-eeeeee--ccc------cCCCcEEEEEECC-CCCEEEEEEcCCCC-ceeceEEEEEe
Q 024436 184 LSFP---WIGNVLIKLPID--I-VKIHSS--LVK------LSGNGGMAMRISE-QGNVLEILEEIGRK-MWRSISEVEEK 247 (268)
Q Consensus 184 ~~~~---~~g~~l~~i~~~--~-~~~~~~--~~~------~~~~~~~~~~~~~-~G~~~~~~~~~~g~-~~~~~s~~~~~ 247 (268)
..|. .++.-...+..+ . ...+.+ -+. .+.. +.+..+|. +|.+..++....+. .++ .+.....
T Consensus 165 kLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~-s~~~~lDAf~G~~~~tfs~~~~~~~~~-~~a~ftP 242 (311)
T KOG1446|consen 165 KLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNA-SFIYLLDAFDGTVKSTFSGYPNAGNLP-LSATFTP 242 (311)
T ss_pred EEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCC-CcEEEEEccCCcEeeeEeeccCCCCcc-eeEEECC
Confidence 3332 111111111111 1 000000 000 0111 33444444 56666666544322 122 3333447
Q ss_pred CCEEEEeeCCCCeEEEEeCCC
Q 024436 248 DGNLWIGSVNMPYAGLYNYSS 268 (268)
Q Consensus 248 ~g~Lyv~s~~~~~v~~~~~~~ 268 (268)
+++..+++..+.+|.+.++++
T Consensus 243 ds~Fvl~gs~dg~i~vw~~~t 263 (311)
T KOG1446|consen 243 DSKFVLSGSDDGTIHVWNLET 263 (311)
T ss_pred CCcEEEEecCCCcEEEEEcCC
Confidence 888888888888888887653
No 62
>PRK00178 tolB translocation protein TolB; Provisional
Probab=97.92 E-value=0.0056 Score=56.60 Aligned_cols=82 Identities=15% Similarity=0.138 Sum_probs=53.0
Q ss_pred CcceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecC--CcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCC
Q 024436 88 KTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETT--SCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPR 165 (268)
Q Consensus 88 ~~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~--~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~d 165 (268)
....||.+|.++++.+.+...-......+|+|||+.|+++... ...|++++++++. ...+...++......+++|
T Consensus 221 ~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~---~~~lt~~~~~~~~~~~spD 297 (430)
T PRK00178 221 KRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ---LSRVTNHPAIDTEPFWGKD 297 (430)
T ss_pred CCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCC---eEEcccCCCCcCCeEECCC
Confidence 3457999999988777665332233468999999988876433 3489999988643 2323222233445688999
Q ss_pred CC-EEEEE
Q 024436 166 GG-FWVGI 172 (268)
Q Consensus 166 G~-l~va~ 172 (268)
|+ ++.+.
T Consensus 298 g~~i~f~s 305 (430)
T PRK00178 298 GRTLYFTS 305 (430)
T ss_pred CCEEEEEE
Confidence 97 44443
No 63
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=97.90 E-value=0.0072 Score=51.06 Aligned_cols=151 Identities=18% Similarity=0.279 Sum_probs=96.9
Q ss_pred CEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCe-EEEEEEcCCCC-----CeeEEEeecCCcceEEEEeC
Q 024436 24 GVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRR-WLHFARTSPNR-----NHISVILSGDKTGRLMKYDP 97 (268)
Q Consensus 24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~-~~~~~~~~~~~-----~~~~~~~~~~~~g~v~~~d~ 97 (268)
-+.++..+ .+.-..+.|.-||+.+|++.+||.+..|+..... -..+...++-. +...+++.++..|.|..+|.
T Consensus 75 Pv~t~e~h-~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl 153 (311)
T KOG0315|consen 75 PVATFEGH-TKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDL 153 (311)
T ss_pred ceeEEecc-CCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEc
Confidence 45555544 2467788999999999999999999888765321 01111111110 12346667788899999998
Q ss_pred CCCeE--EEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCC-CCCceeEEEeC---CCCCCceEEcCCCCEEEE
Q 024436 98 ATKQV--TVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS-KAGTIEIVAQL---PGFPDNIKRSPRGGFWVG 171 (268)
Q Consensus 98 ~~~~~--~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~-~~g~~~~~~~l---~g~Pdgia~d~dG~l~va 171 (268)
.+... +.+.+....-..+++.|||++| ++-...++.++|++-+. .....+++..+ .++---..+.||++++++
T Consensus 154 ~~~~c~~~liPe~~~~i~sl~v~~dgsml-~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat 232 (311)
T KOG0315|consen 154 GENSCTHELIPEDDTSIQSLTVMPDGSML-AAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLAT 232 (311)
T ss_pred cCCccccccCCCCCcceeeEEEcCCCcEE-EEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEe
Confidence 75432 2234555666789999999855 56667889999998653 22223332222 234445677898888887
Q ss_pred EecCC
Q 024436 172 IHSRR 176 (268)
Q Consensus 172 ~~~~~ 176 (268)
+....
T Consensus 233 ~ssdk 237 (311)
T KOG0315|consen 233 CSSDK 237 (311)
T ss_pred ecCCc
Confidence 76654
No 64
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.87 E-value=0.015 Score=50.94 Aligned_cols=228 Identities=14% Similarity=0.097 Sum_probs=115.6
Q ss_pred ecCCCCCcceEEECC-CCCEEEEEeC-CCeEEEEeCCCCeEEE------------EEEcCCCCCeeEEE--eecCCcceE
Q 024436 29 QIEGAIGPESLAFDA-LGEGPYTGVS-DGRIIKWHQDQRRWLH------------FARTSPNRNHISVI--LSGDKTGRL 92 (268)
Q Consensus 29 ~~~~~~~P~gia~~~-dG~~l~~~~~-~g~I~~~~~~g~~~~~------------~~~~~~~~~~~~~~--~~~~~~g~v 92 (268)
++|. ..++++++| ++..++.... ....+.++..+..... -+..++++.+++.. -.....|.|
T Consensus 2 ~lP~--RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~I 79 (305)
T PF07433_consen 2 PLPA--RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVI 79 (305)
T ss_pred CCCc--cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEE
Confidence 4454 567777777 3443333332 2333344543321111 11223444444332 123456889
Q ss_pred EEEeCCCC--eEEEeecCCCCcceEEEccCCCEEEEEecCCc-----------------EEEEEEccCCCCCceeEEEeC
Q 024436 93 MKYDPATK--QVTVLLGNLSFPNGVALSEDGNYILLAETTSC-----------------RILRYWLKTSKAGTIEIVAQL 153 (268)
Q Consensus 93 ~~~d~~~~--~~~~~~~~~~~pnGia~spdg~~lyva~~~~~-----------------~I~~~~~~~~~~g~~~~~~~l 153 (268)
-++|...+ ++.....+.--|.-|.+.|||++|.|++..=. .+...+...+.+ .+. ..+
T Consensus 80 gVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~l--l~q-~~L 156 (305)
T PF07433_consen 80 GVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGAL--LEQ-VEL 156 (305)
T ss_pred EEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCce--eee-eec
Confidence 99998721 23334455667999999999999999985221 222222221111 000 112
Q ss_pred CC-----CCCceEEcCCCCEEEEEecCCCc--ceeeeEeeCccceeeeeccccc------eeee-eeccccCCCcEEEEE
Q 024436 154 PG-----FPDNIKRSPRGGFWVGIHSRRKG--ISKLVLSFPWIGNVLIKLPIDI------VKIH-SSLVKLSGNGGMAMR 219 (268)
Q Consensus 154 ~g-----~Pdgia~d~dG~l~va~~~~~~~--~~~~v~~~~~~g~~l~~i~~~~------~~~~-~~~~~~~~~~~~~~~ 219 (268)
|- --+-++++++|.+|.++...+-. ..-.|..+...+. +..++.|. +.+. ++. .......+.+
T Consensus 157 p~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~-~~~~~~p~~~~~~l~~Y~gSIa--~~~~g~~ia~ 233 (305)
T PF07433_consen 157 PPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA-LRLLPAPEEQWRRLNGYIGSIA--ADRDGRLIAV 233 (305)
T ss_pred CccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc-ceeccCChHHHHhhCCceEEEE--EeCCCCEEEE
Confidence 10 14578999999999988654321 1112333433332 33333321 1111 111 1122135667
Q ss_pred ECCCCCEEEEEEcCCCCc-----eeceEEEEEeCCEEEEeeCCCCeEEEEe
Q 024436 220 ISEQGNVLEILEEIGRKM-----WRSISEVEEKDGNLWIGSVNMPYAGLYN 265 (268)
Q Consensus 220 ~~~~G~~~~~~~~~~g~~-----~~~~s~~~~~~g~Lyv~s~~~~~v~~~~ 265 (268)
-+|.|..+.+++..+|+. ++..++++..++. |+.+.....+..+.
T Consensus 234 tsPrGg~~~~~d~~tg~~~~~~~l~D~cGva~~~~~-f~~ssG~G~~~~~~ 283 (305)
T PF07433_consen 234 TSPRGGRVAVWDAATGRLLGSVPLPDACGVAPTDDG-FLVSSGQGQLIRLS 283 (305)
T ss_pred ECCCCCEEEEEECCCCCEeeccccCceeeeeecCCc-eEEeCCCccEEEcc
Confidence 777888888887777754 3445566665545 55555555555543
No 65
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=97.87 E-value=0.00033 Score=67.52 Aligned_cols=152 Identities=13% Similarity=0.041 Sum_probs=92.1
Q ss_pred eecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeE-EEe-CCCCCCceEEcCC-CCEEEEEecCCCccee
Q 024436 105 LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEI-VAQ-LPGFPDNIKRSPR-GGFWVGIHSRRKGISK 181 (268)
Q Consensus 105 ~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~-~~~-l~g~Pdgia~d~d-G~l~va~~~~~~~~~~ 181 (268)
+..++..|.|||++--++.+|.+|+...+|-+-.++|.. +++ |.+ |- .|++|++|+- |+||-++|.....-++
T Consensus 1063 ~n~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~---rkvLf~tdLV-NPR~iv~D~~rgnLYwtDWnRenPkIe 1138 (1289)
T KOG1214|consen 1063 VNSGLISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGSE---RKVLFYTDLV-NPRAIVVDPIRGNLYWTDWNRENPKIE 1138 (1289)
T ss_pred ecccCCCccceeeeeccceeeeeccccchhheeecCCce---eeEEEeeccc-CcceEEeecccCceeeccccccCCcce
Confidence 457789999999999999999999999999999998742 333 333 43 6999999995 5899999987653322
Q ss_pred eeEeeCccceeeeeccccceeee--------eeccccCCCcEEEEEECCCCCEEEEEEcCCCCceeceEEEEEeCCEEEE
Q 024436 182 LVLSFPWIGNVLIKLPIDIVKIH--------SSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVEEKDGNLWI 253 (268)
Q Consensus 182 ~v~~~~~~g~~l~~i~~~~~~~~--------~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~g~~~~~~s~~~~~~g~Lyv 253 (268)
-.......++++..-.....+-. -|+.....+ .+-.+.++|.-.++... .+.-+-+++.+.+.+|.
T Consensus 1139 ts~mDG~NrRilin~DigLPNGLtfdpfs~~LCWvDAGt~--rleC~~p~g~gRR~i~~----~LqYPF~itsy~~~fY~ 1212 (1289)
T KOG1214|consen 1139 TSSMDGENRRILINTDIGLPNGLTFDPFSKLLCWVDAGTK--RLECTLPDGTGRRVIQN----NLQYPFSITSYADHFYH 1212 (1289)
T ss_pred eeccCCccceEEeecccCCCCCceeCcccceeeEEecCCc--ceeEecCCCCcchhhhh----cccCceeeeecccccee
Confidence 22222233333322111111100 011111111 12333333332222221 13445567777888999
Q ss_pred eeCCCCeEEEEeC
Q 024436 254 GSVNMPYAGLYNY 266 (268)
Q Consensus 254 ~s~~~~~v~~~~~ 266 (268)
++|..|+|.-+++
T Consensus 1213 TDWk~n~vvsv~~ 1225 (1289)
T KOG1214|consen 1213 TDWKRNGVVSVNK 1225 (1289)
T ss_pred eccccCceEEeec
Confidence 9999999987754
No 66
>PRK01742 tolB translocation protein TolB; Provisional
Probab=97.87 E-value=0.0071 Score=56.05 Aligned_cols=81 Identities=17% Similarity=0.136 Sum_probs=51.1
Q ss_pred CcceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCc--EEEEEEccCCCCCceeEEEeCCCCCCceEEcCC
Q 024436 88 KTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSC--RILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPR 165 (268)
Q Consensus 88 ~~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~--~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~d 165 (268)
....|+.+|.++++.+.+...-..-..++|+|||+.|+++....+ .|+.++++++. ...+....+.....++++|
T Consensus 226 ~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~---~~~lt~~~~~~~~~~wSpD 302 (429)
T PRK01742 226 KKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT---PSQLTSGAGNNTEPSWSPD 302 (429)
T ss_pred CCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCC---eEeeccCCCCcCCEEECCC
Confidence 345799999887766555432222346899999998888654333 67888876532 2333222233457889999
Q ss_pred CC-EEEE
Q 024436 166 GG-FWVG 171 (268)
Q Consensus 166 G~-l~va 171 (268)
|+ ++.+
T Consensus 303 G~~i~f~ 309 (429)
T PRK01742 303 GQSILFT 309 (429)
T ss_pred CCEEEEE
Confidence 97 4433
No 67
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.80 E-value=0.012 Score=50.50 Aligned_cols=137 Identities=15% Similarity=0.094 Sum_probs=84.4
Q ss_pred CCcceEEEEeCCCCeEEEe--ecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcC
Q 024436 87 DKTGRLMKYDPATKQVTVL--LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSP 164 (268)
Q Consensus 87 ~~~g~v~~~d~~~~~~~~~--~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~ 164 (268)
.+..+|.++|+++|++... .+.--|..||++-.| .||.--+.++...+||.+. +.....| ..++-..||+-|.
T Consensus 65 yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d--~l~qLTWk~~~~f~yd~~t--l~~~~~~-~y~~EGWGLt~dg 139 (264)
T PF05096_consen 65 YGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD--KLYQLTWKEGTGFVYDPNT--LKKIGTF-PYPGEGWGLTSDG 139 (264)
T ss_dssp TTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT--EEEEEESSSSEEEEEETTT--TEEEEEE-E-SSS--EEEECS
T ss_pred CCcEEEEEEECCCCcEEEEEECCccccceeEEEECC--EEEEEEecCCeEEEEcccc--ceEEEEE-ecCCcceEEEcCC
Confidence 3456899999999876432 345568899999965 6999889999999999874 2223333 2456778999763
Q ss_pred CCCEEEEEecCCCcceeeeEee-CccceeeeeccccceeeeeeccccCCCcEEEEEECCCCCEEEEEEcCCCCceeceEE
Q 024436 165 RGGFWVGIHSRRKGISKLVLSF-PWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIGRKMWRSISE 243 (268)
Q Consensus 165 dG~l~va~~~~~~~~~~~v~~~-~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~g~~~~~~s~ 243 (268)
..||+++.... +... |.+-+..++ +.+. + +|+++..+..
T Consensus 140 -~~Li~SDGS~~------L~~~dP~~f~~~~~-------------------------------i~V~-~-~g~pv~~LNE 179 (264)
T PF05096_consen 140 -KRLIMSDGSSR------LYFLDPETFKEVRT-------------------------------IQVT-D-NGRPVSNLNE 179 (264)
T ss_dssp -SCEEEE-SSSE------EEEE-TTT-SEEEE-------------------------------EE-E-E-TTEE---EEE
T ss_pred -CEEEEECCccc------eEEECCcccceEEE-------------------------------EEEE-E-CCEECCCcEe
Confidence 37888887553 2222 111111111 1111 1 3455666666
Q ss_pred EEEeCCEEEEeeCCCCeEEEEeCCC
Q 024436 244 VEEKDGNLWIGSVNMPYAGLYNYSS 268 (268)
Q Consensus 244 ~~~~~g~Lyv~s~~~~~v~~~~~~~ 268 (268)
.-..+|+||---+..++|.+||-.|
T Consensus 180 LE~i~G~IyANVW~td~I~~Idp~t 204 (264)
T PF05096_consen 180 LEYINGKIYANVWQTDRIVRIDPET 204 (264)
T ss_dssp EEEETTEEEEEETTSSEEEEEETTT
T ss_pred EEEEcCEEEEEeCCCCeEEEEeCCC
Confidence 6678999999999999999999764
No 68
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=97.80 E-value=9.3e-05 Score=44.95 Aligned_cols=37 Identities=22% Similarity=0.095 Sum_probs=33.9
Q ss_pred eecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccC
Q 024436 105 LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT 141 (268)
Q Consensus 105 ~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~ 141 (268)
+..++..||||+++++++.||.+|...+.|.+++++|
T Consensus 4 ~~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g 40 (43)
T smart00135 4 LSEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDG 40 (43)
T ss_pred EECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCC
Confidence 4457889999999999999999999999999999986
No 69
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=97.79 E-value=0.0055 Score=51.74 Aligned_cols=150 Identities=11% Similarity=0.083 Sum_probs=90.4
Q ss_pred hcCCCEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCC---eEEEEEEcC---------CCCCeeEEEeecC
Q 024436 20 SSTQGVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQR---RWLHFARTS---------PNRNHISVILSGD 87 (268)
Q Consensus 20 ~~~~~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~---~~~~~~~~~---------~~~~~~~~~~~~~ 87 (268)
++-++.++|+.+. .+-+-+.+.||++.+.++. .-.|..+|.+.. ....|.... .++.|++ ++.
T Consensus 28 ~tG~C~rTiqh~d-sqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMy---Tgs 102 (311)
T KOG0315|consen 28 LTGICSRTIQHPD-SQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMY---TGS 102 (311)
T ss_pred hcCeEEEEEecCc-cceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEE---ecC
Confidence 3456899999985 4788999999999776643 233333343221 122222111 1223443 556
Q ss_pred CcceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCC
Q 024436 88 KTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG 167 (268)
Q Consensus 88 ~~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~ 167 (268)
.+|.+-.+|...-...+..+...--|.+.+.|....|++.+ .++.|++||+..... ..+...+..-.-.-+++++||.
T Consensus 103 eDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~d-qsg~irvWDl~~~~c-~~~liPe~~~~i~sl~v~~dgs 180 (311)
T KOG0315|consen 103 EDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGD-QSGNIRVWDLGENSC-THELIPEDDTSIQSLTVMPDGS 180 (311)
T ss_pred CCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeec-CCCcEEEEEccCCcc-ccccCCCCCcceeeEEEcCCCc
Confidence 67777777776544455555545569999999998898877 568899999864211 1111111111234678888888
Q ss_pred EEEEEecCC
Q 024436 168 FWVGIHSRR 176 (268)
Q Consensus 168 l~va~~~~~ 176 (268)
..+|....+
T Consensus 181 ml~a~nnkG 189 (311)
T KOG0315|consen 181 MLAAANNKG 189 (311)
T ss_pred EEEEecCCc
Confidence 777666554
No 70
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=97.78 E-value=0.012 Score=50.39 Aligned_cols=136 Identities=14% Similarity=0.192 Sum_probs=87.4
Q ss_pred CCcceEEECCCCCEEEEEeCCCeEEEEeCCC-CeEEEEEEc----------CCCCCeeEEEeecCCcceEEEEeCCCCeE
Q 024436 34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQ-RRWLHFART----------SPNRNHISVILSGDKTGRLMKYDPATKQV 102 (268)
Q Consensus 34 ~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g-~~~~~~~~~----------~~~~~~~~~~~~~~~~g~v~~~d~~~~~~ 102 (268)
..-++++..+||++.++..-|+.+..||..+ +....|... ..++ .+.++..+..+..++.-+...
T Consensus 64 H~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~----qivSGSrDkTiklwnt~g~ck 139 (315)
T KOG0279|consen 64 HFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNR----QIVSGSRDKTIKLWNTLGVCK 139 (315)
T ss_pred eEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCc----eeecCCCcceeeeeeecccEE
Confidence 3567889999999889888899999998754 332333221 1121 123444555666666653333
Q ss_pred EEeecC--CCCcceEEEccCC-CEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEecC
Q 024436 103 TVLLGN--LSFPNGVALSEDG-NYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSR 175 (268)
Q Consensus 103 ~~~~~~--~~~pnGia~spdg-~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~~ 175 (268)
-...++ -..-+.+.|+|.. .-++++.+....|.+|++++-++ ...+..-.++-.-+++.|||.+.......
T Consensus 140 ~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l--~~~~~gh~~~v~t~~vSpDGslcasGgkd 213 (315)
T KOG0279|consen 140 YTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL--RTTFIGHSGYVNTVTVSPDGSLCASGGKD 213 (315)
T ss_pred EEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcch--hhccccccccEEEEEECCCCCEEecCCCC
Confidence 333333 4567899999996 45667777888999999986332 22222223577889999999998774333
No 71
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.78 E-value=0.0023 Score=56.03 Aligned_cols=89 Identities=17% Similarity=0.014 Sum_probs=58.4
Q ss_pred ecCCcceEEEEeCCCCeEEEeec--CCCCcc-eEEEccCCCEEEEEec----CCcEEEEEEccCCCCCceeEEEeCCCCC
Q 024436 85 SGDKTGRLMKYDPATKQVTVLLG--NLSFPN-GVALSEDGNYILLAET----TSCRILRYWLKTSKAGTIEIVAQLPGFP 157 (268)
Q Consensus 85 ~~~~~g~v~~~d~~~~~~~~~~~--~~~~pn-Gia~spdg~~lyva~~----~~~~I~~~~~~~~~~g~~~~~~~l~g~P 157 (268)
...+.--.+++|+.+++...... ....-| .-+||+||++||.+|. ..+.|-+||...+ ......|..-.-.|
T Consensus 23 aRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~-~~ri~E~~s~GIGP 101 (305)
T PF07433_consen 23 ARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG-YRRIGEFPSHGIGP 101 (305)
T ss_pred EeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC-cEEEeEecCCCcCh
Confidence 43454567889998887654432 111222 3789999999999965 5579999998731 22222332221259
Q ss_pred CceEEcCCC-CEEEEEec
Q 024436 158 DNIKRSPRG-GFWVGIHS 174 (268)
Q Consensus 158 dgia~d~dG-~l~va~~~ 174 (268)
.-|.+.+|| .|.||..+
T Consensus 102 Hel~l~pDG~tLvVANGG 119 (305)
T PF07433_consen 102 HELLLMPDGETLVVANGG 119 (305)
T ss_pred hhEEEcCCCCEEEEEcCC
Confidence 999999999 67777755
No 72
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.77 E-value=0.003 Score=54.63 Aligned_cols=151 Identities=13% Similarity=0.174 Sum_probs=91.0
Q ss_pred CEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEe--CCCCeEEEEEE------cCC--CC----------CeeEEE
Q 024436 24 GVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWH--QDQRRWLHFAR------TSP--NR----------NHISVI 83 (268)
Q Consensus 24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~--~~g~~~~~~~~------~~~--~~----------~~~~~~ 83 (268)
=++++|+.++..||+|..-.+|.+.+++-.+.+++.+. +++.. ..... ..+ +. ....-+
T Consensus 119 lirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~-~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~ 197 (316)
T COG3204 119 LIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTV-ISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFV 197 (316)
T ss_pred eEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccE-EeccceEEeccccCCCCcCceeeecCCCCceEEE
Confidence 57899999999999999999999777777788887764 45432 11110 011 11 011111
Q ss_pred eecCCcceEEEEeCCCCeEEEeec-----C----CCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEE---
Q 024436 84 LSGDKTGRLMKYDPATKQVTVLLG-----N----LSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVA--- 151 (268)
Q Consensus 84 ~~~~~~g~v~~~d~~~~~~~~~~~-----~----~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~--- 151 (268)
.....--.||.++........-.. . +.--.|+.+++...+|+|=.-.++++..++.+|...+......
T Consensus 198 aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~ 277 (316)
T COG3204 198 AKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNH 277 (316)
T ss_pred EEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCC
Confidence 222334566666543211111100 0 1123488999877778886667789999998874321111111
Q ss_pred ----eCCCCCCceEEcCCCCEEEEEecCC
Q 024436 152 ----QLPGFPDNIKRSPRGGFWVGIHSRR 176 (268)
Q Consensus 152 ----~l~g~Pdgia~d~dG~l~va~~~~~ 176 (268)
++| .|.||++|.+|+||+....+.
T Consensus 278 gL~~dip-qaEGiamDd~g~lYIvSEPnl 305 (316)
T COG3204 278 GLSSDIP-QAEGIAMDDDGNLYIVSEPNL 305 (316)
T ss_pred CCcccCC-CcceeEECCCCCEEEEecCCc
Confidence 123 589999999999999887764
No 73
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.73 E-value=0.039 Score=51.22 Aligned_cols=130 Identities=14% Similarity=0.129 Sum_probs=68.7
Q ss_pred eEEECCCCC---EEEEEeCC--CeEEEEeCCCCeEEEEE---------EcCCCCCeeEEEeecCCcceEEE--EeCCC--
Q 024436 38 SLAFDALGE---GPYTGVSD--GRIIKWHQDQRRWLHFA---------RTSPNRNHISVILSGDKTGRLMK--YDPAT-- 99 (268)
Q Consensus 38 gia~~~dG~---~l~~~~~~--g~I~~~~~~g~~~~~~~---------~~~~~~~~~~~~~~~~~~g~v~~--~d~~~-- 99 (268)
..+++|||+ ++|++..+ .+|+..+.++.....+. ..+|++.++.-.....+...+|. ++.++
T Consensus 189 sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~ 268 (428)
T PRK01029 189 TPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGA 268 (428)
T ss_pred cceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCC
Confidence 348999997 34566543 56888887654222221 12345544432222122224444 45432
Q ss_pred -CeEEEeecC-CCCcceEEEccCCCEEEEEec--CCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCE
Q 024436 100 -KQVTVLLGN-LSFPNGVALSEDGNYILLAET--TSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGF 168 (268)
Q Consensus 100 -~~~~~~~~~-~~~pnGia~spdg~~lyva~~--~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l 168 (268)
++.+.+... .......+|+|||+.|+++.. ...+|+++++++.. +..+.+....+.....++.|||+.
T Consensus 269 ~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g-~~~~~lt~~~~~~~~p~wSPDG~~ 340 (428)
T PRK01029 269 IGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG-QSPRLLTKKYRNSSCPAWSPDGKK 340 (428)
T ss_pred CCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc-cceEEeccCCCCccceeECCCCCE
Confidence 344445433 233456799999997766543 23478888875321 122222222223456789999973
No 74
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=0.022 Score=49.43 Aligned_cols=162 Identities=13% Similarity=0.094 Sum_probs=94.5
Q ss_pred CEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcCC--------CCCeeEEEeecCCcceEEEE
Q 024436 24 GVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSP--------NRNHISVILSGDKTGRLMKY 95 (268)
Q Consensus 24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~--------~~~~~~~~~~~~~~g~v~~~ 95 (268)
+++.++ |.-+.-.+|.+.|-++.+.++..|..|..||..-+.-.+.....+ .+-++ + ...+...|..+
T Consensus 92 ylRYF~-GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLif-A--~~~~~~~IkLy 167 (311)
T KOG1446|consen 92 YLRYFP-GHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIF-A--LANGSELIKLY 167 (311)
T ss_pred eEEEcC-CCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEE-E--EecCCCeEEEE
Confidence 444443 334678999999999999999999999999876332122221111 11111 1 11233355555
Q ss_pred eCCC---CeEEEe---ecCCCCcceEEEccCCCEEEEEecCCcEEEEEEc-cCCCCCceeEEEeCC---CCCCceEEcCC
Q 024436 96 DPAT---KQVTVL---LGNLSFPNGVALSEDGNYILLAETTSCRILRYWL-KTSKAGTIEIVAQLP---GFPDNIKRSPR 165 (268)
Q Consensus 96 d~~~---~~~~~~---~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~-~~~~~g~~~~~~~l~---g~Pdgia~d~d 165 (268)
|... |-.+.. .......++|.|||||+.|.++. ..+.++.+|. +|.. ...|...+ ..|-.-++.||
T Consensus 168 D~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT-~~s~~~~lDAf~G~~---~~tfs~~~~~~~~~~~a~ftPd 243 (311)
T KOG1446|consen 168 DLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLST-NASFIYLLDAFDGTV---KSTFSGYPNAGNLPLSATFTPD 243 (311)
T ss_pred EecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEe-CCCcEEEEEccCCcE---eeeEeeccCCCCcceeEEECCC
Confidence 5432 111111 13456678999999999999886 4566777764 3321 22232221 35667788899
Q ss_pred CCEEEEEecCCCcceeeeEee-Cccceeeeeccc
Q 024436 166 GGFWVGIHSRRKGISKLVLSF-PWIGNVLIKLPI 198 (268)
Q Consensus 166 G~l~va~~~~~~~~~~~v~~~-~~~g~~l~~i~~ 198 (268)
|+..++....+ + |..+ -.+|+...+...
T Consensus 244 s~Fvl~gs~dg-~----i~vw~~~tg~~v~~~~~ 272 (311)
T KOG1446|consen 244 SKFVLSGSDDG-T----IHVWNLETGKKVAVLRG 272 (311)
T ss_pred CcEEEEecCCC-c----EEEEEcCCCcEeeEecC
Confidence 99888777765 3 4433 245665555443
No 75
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=97.70 E-value=0.0006 Score=65.84 Aligned_cols=140 Identities=16% Similarity=0.181 Sum_probs=91.8
Q ss_pred CCCCcceEEECCC-CCEEEEEeCCCeEEEEeCCCCeEEEE--EE-cCCCC--------C-eeEEEeecCCcceEEEEeCC
Q 024436 32 GAIGPESLAFDAL-GEGPYTGVSDGRIIKWHQDQRRWLHF--AR-TSPNR--------N-HISVILSGDKTGRLMKYDPA 98 (268)
Q Consensus 32 ~~~~P~gia~~~d-G~~l~~~~~~g~I~~~~~~g~~~~~~--~~-~~~~~--------~-~~~~~~~~~~~g~v~~~d~~ 98 (268)
++..|||||+|.- .++||++...++|-.-..||+.-..+ .. +.|.. + |..++. ..+-.|-+.+.+
T Consensus 1066 ~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~rkvLf~tdLVNPR~iv~D~~rgnLYwtDWn--RenPkIets~mD 1143 (1289)
T KOG1214|consen 1066 GLISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGSERKVLFYTDLVNPRAIVVDPIRGNLYWTDWN--RENPKIETSSMD 1143 (1289)
T ss_pred cCCCccceeeeeccceeeeeccccchhheeecCCceeeEEEeecccCcceEEeecccCceeecccc--ccCCcceeeccC
Confidence 5778999999986 45677888777776556677532221 11 11211 1 222322 122345444444
Q ss_pred CCeEE-EeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEecCCC
Q 024436 99 TKQVT-VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRK 177 (268)
Q Consensus 99 ~~~~~-~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~~~~ 177 (268)
+..-+ .+.+.+..|||+.|+|-.+.|-..|.+++|+.-..+++. +.+.++-.| .+|-+|.-+.+ ++|-++|..+.
T Consensus 1144 G~NrRilin~DigLPNGLtfdpfs~~LCWvDAGt~rleC~~p~g~--gRR~i~~~L-qYPF~itsy~~-~fY~TDWk~n~ 1219 (1289)
T KOG1214|consen 1144 GENRRILINTDIGLPNGLTFDPFSKLLCWVDAGTKRLECTLPDGT--GRRVIQNNL-QYPFSITSYAD-HFYHTDWKRNG 1219 (1289)
T ss_pred CccceEEeecccCCCCCceeCcccceeeEEecCCcceeEecCCCC--cchhhhhcc-cCceeeeeccc-cceeeccccCc
Confidence 22222 345788999999999999999999999999998888762 334444445 48999988876 59999998764
No 76
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=97.68 E-value=0.00061 Score=59.54 Aligned_cols=73 Identities=26% Similarity=0.398 Sum_probs=58.5
Q ss_pred EeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCE-EEEEe
Q 024436 95 YDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGF-WVGIH 173 (268)
Q Consensus 95 ~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l-~va~~ 173 (268)
+|-.++ +++.+++.+|.+..|. || .||++|+.++++.+++.+. |..++++.+||+|.|+++. |++ +|+..
T Consensus 190 idv~s~--evl~~GLsmPhSPRWh-dg-rLwvldsgtGev~~vD~~~---G~~e~Va~vpG~~rGL~f~--G~llvVgmS 260 (335)
T TIGR03032 190 IDIPSG--EVVASGLSMPHSPRWY-QG-KLWLLNSGRGELGYVDPQA---GKFQPVAFLPGFTRGLAFA--GDFAFVGLS 260 (335)
T ss_pred EEeCCC--CEEEcCccCCcCCcEe-CC-eEEEEECCCCEEEEEcCCC---CcEEEEEECCCCCccccee--CCEEEEEec
Confidence 444434 5678999999999998 56 4999999999999999874 4577888899999999998 764 56665
Q ss_pred cCC
Q 024436 174 SRR 176 (268)
Q Consensus 174 ~~~ 176 (268)
..+
T Consensus 261 k~R 263 (335)
T TIGR03032 261 KLR 263 (335)
T ss_pred ccc
Confidence 544
No 77
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.65 E-value=0.028 Score=51.99 Aligned_cols=81 Identities=19% Similarity=0.156 Sum_probs=53.0
Q ss_pred cceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecC--CcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCC
Q 024436 89 TGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETT--SCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRG 166 (268)
Q Consensus 89 ~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~--~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG 166 (268)
...||.+|..+++.+.+...-.......|+|||+.|+++... +..|+.++++++. .+.+...++.-....+.|||
T Consensus 212 ~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~---~~~LT~~~~~d~~p~~SPDG 288 (419)
T PRK04043 212 KPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT---LTQITNYPGIDVNGNFVEDD 288 (419)
T ss_pred CCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc---EEEcccCCCccCccEECCCC
Confidence 458999999989888876532222346799999988776543 3589999987642 33333333222245789999
Q ss_pred C-EEEEE
Q 024436 167 G-FWVGI 172 (268)
Q Consensus 167 ~-l~va~ 172 (268)
+ ++...
T Consensus 289 ~~I~F~S 295 (419)
T PRK04043 289 KRIVFVS 295 (419)
T ss_pred CEEEEEE
Confidence 6 55544
No 78
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.60 E-value=0.034 Score=53.63 Aligned_cols=136 Identities=13% Similarity=0.145 Sum_probs=85.6
Q ss_pred CcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEc----------CCCCCeeEEEeecCCcceEEEEeCCCCeEEE
Q 024436 35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFART----------SPNRNHISVILSGDKTGRLMKYDPATKQVTV 104 (268)
Q Consensus 35 ~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~----------~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~ 104 (268)
.-...++.+.-++++++...|........+-........ ...+.|+. +...+.|.+.+|+..+ +.-+
T Consensus 267 kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA--~g~~klgQLlVweWqs-EsYV 343 (893)
T KOG0291|consen 267 KVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIA--FGCSKLGQLLVWEWQS-ESYV 343 (893)
T ss_pred ceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEE--EcCCccceEEEEEeec-ccee
Confidence 345667788888888888777775555332211111111 11123432 2345678888888873 3333
Q ss_pred eec--CCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEecCC
Q 024436 105 LLG--NLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRR 176 (268)
Q Consensus 105 ~~~--~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~~~ 176 (268)
+.. +...-+.++.+|||+ +.+|....++|.+|+...+.. ..+|.+-.....++.+...|+..++..-.+
T Consensus 344 lKQQgH~~~i~~l~YSpDgq-~iaTG~eDgKVKvWn~~SgfC--~vTFteHts~Vt~v~f~~~g~~llssSLDG 414 (893)
T KOG0291|consen 344 LKQQGHSDRITSLAYSPDGQ-LIATGAEDGKVKVWNTQSGFC--FVTFTEHTSGVTAVQFTARGNVLLSSSLDG 414 (893)
T ss_pred eeccccccceeeEEECCCCc-EEEeccCCCcEEEEeccCceE--EEEeccCCCceEEEEEEecCCEEEEeecCC
Confidence 333 355568999999997 778999999999999864321 334444334577999999999777665444
No 79
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.59 E-value=0.0024 Score=54.82 Aligned_cols=114 Identities=13% Similarity=0.175 Sum_probs=68.7
Q ss_pred CCEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcC-CCC--CeeEE--------EeecCCcce
Q 024436 23 QGVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTS-PNR--NHISV--------ILSGDKTGR 91 (268)
Q Consensus 23 ~~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~-~~~--~~~~~--------~~~~~~~g~ 91 (268)
+.+.+++.++ ...|++ .||+.++.+.+..+++.++|..-......... .++ .++.+ +..--.+.+
T Consensus 121 ~~~~~~~y~~--EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~ 196 (264)
T PF05096_consen 121 KKIGTFPYPG--EGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDR 196 (264)
T ss_dssp EEEEEEE-SS--S--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSSE
T ss_pred eEEEEEecCC--cceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCe
Confidence 4677777775 566777 56777888889999999998742222221111 111 11111 111124678
Q ss_pred EEEEeCCCCeEEEeec----------------CCCCcceEEEccCCCEEEEEecCCcEEEEEEcc
Q 024436 92 LMKYDPATKQVTVLLG----------------NLSFPNGVALSEDGNYILLAETTSCRILRYWLK 140 (268)
Q Consensus 92 v~~~d~~~~~~~~~~~----------------~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~ 140 (268)
|.+|||++|++....+ ....-||||++|+++.+|||.-.=.+++.+.+.
T Consensus 197 I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp~lyeV~l~ 261 (264)
T PF05096_consen 197 IVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLWPKLYEVKLV 261 (264)
T ss_dssp EEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-SEEEEEEEE
T ss_pred EEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCCCCceEEEEEE
Confidence 9999999999876431 124579999999999999998877888887653
No 80
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.54 E-value=0.077 Score=49.65 Aligned_cols=136 Identities=20% Similarity=0.296 Sum_probs=83.1
Q ss_pred CCcceEEECCCCCEEEEEeCCCeEEEEeCCCCe---EEEEE---------EcCCCCCeeEEEeecCCcceEEEEeC-CCC
Q 024436 34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRR---WLHFA---------RTSPNRNHISVILSGDKTGRLMKYDP-ATK 100 (268)
Q Consensus 34 ~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~---~~~~~---------~~~~~~~~~~~~~~~~~~g~v~~~d~-~~~ 100 (268)
..-..+.|+++|+.+.+...++.+..+...+.. ..... ..+++..++ .+...+..+..+|. +.+
T Consensus 160 ~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l---~s~s~D~tiriwd~~~~~ 236 (456)
T KOG0266|consen 160 PSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYL---LSGSDDKTLRIWDLKDDG 236 (456)
T ss_pred CceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEE---EEecCCceEEEeeccCCC
Confidence 445568899999987777677777666653221 11110 012222222 23333444555554 333
Q ss_pred -eEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEecC
Q 024436 101 -QVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSR 175 (268)
Q Consensus 101 -~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~~ 175 (268)
.++++..+..+.+.++|+|+| .++++-+..+.|..|++.+++. .+.+..-.+.-.++++.++|+++++....
T Consensus 237 ~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~--~~~l~~hs~~is~~~f~~d~~~l~s~s~d 309 (456)
T KOG0266|consen 237 RNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGEC--VRKLKGHSDGISGLAFSPDGNLLVSASYD 309 (456)
T ss_pred eEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeE--EEeeeccCCceEEEEECCCCCEEEEcCCC
Confidence 456666777788999999999 5888999999999999975321 22222222335678899999976665433
No 81
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=97.53 E-value=0.0066 Score=54.60 Aligned_cols=131 Identities=21% Similarity=0.279 Sum_probs=75.4
Q ss_pred CcceEEECCCCCEEEEEeCCCeEEEEeCCCCe-----------EEEEEEcCCCCCeeEEEeecCCcceEEEEeCCCCe-E
Q 024436 35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRR-----------WLHFARTSPNRNHISVILSGDKTGRLMKYDPATKQ-V 102 (268)
Q Consensus 35 ~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~-----------~~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~-~ 102 (268)
.-.-++|.|+|+++.++.-|..=..||...+. +...+- .+++. +......+..++||-+- +|+ +
T Consensus 263 RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf-~~DGS-L~~tGGlD~~~RvWDlR--tgr~i 338 (459)
T KOG0272|consen 263 RVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAF-QPDGS-LAATGGLDSLGRVWDLR--TGRCI 338 (459)
T ss_pred hheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEe-cCCCc-eeeccCccchhheeecc--cCcEE
Confidence 45567888888888877665444344443221 000000 01111 11111223556766554 454 4
Q ss_pred EEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCC---CCCCceEEcC-CCCEEEEEecC
Q 024436 103 TVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLP---GFPDNIKRSP-RGGFWVGIHSR 175 (268)
Q Consensus 103 ~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~---g~Pdgia~d~-dG~l~va~~~~ 175 (268)
-.+.++...-.+++|+|+| +...|.+..+.+.+||+... ..+..+| .....++++| .|.+++++...
T Consensus 339 m~L~gH~k~I~~V~fsPNG-y~lATgs~Dnt~kVWDLR~r-----~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD 409 (459)
T KOG0272|consen 339 MFLAGHIKEILSVAFSPNG-YHLATGSSDNTCKVWDLRMR-----SELYTIPAHSNLVSQVKYSPQEGYFLVTASYD 409 (459)
T ss_pred EEecccccceeeEeECCCc-eEEeecCCCCcEEEeeeccc-----ccceecccccchhhheEecccCCeEEEEcccC
Confidence 4455666667899999999 57788888999999998742 2233344 2466888997 45555555433
No 82
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.50 E-value=0.042 Score=47.55 Aligned_cols=168 Identities=19% Similarity=0.208 Sum_probs=87.1
Q ss_pred CcceEEEEeCCCCeEEEe---ecCCCCcceEEEccCCCEEEEEecC--Cc-EEEE--EEccCCCCCceeEEEe-------
Q 024436 88 KTGRLMKYDPATKQVTVL---LGNLSFPNGVALSEDGNYILLAETT--SC-RILR--YWLKTSKAGTIEIVAQ------- 152 (268)
Q Consensus 88 ~~g~v~~~d~~~~~~~~~---~~~~~~pnGia~spdg~~lyva~~~--~~-~I~~--~~~~~~~~g~~~~~~~------- 152 (268)
..|-|-.||.. .....+ ......|..+.+.+||++|.+++.. ++ ..-| ..++. +...-++.+
T Consensus 138 ~rGViGvYd~r-~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNlds--MePSlvlld~atG~li 214 (366)
T COG3490 138 NRGVIGVYDAR-EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDS--MEPSLVLLDAATGNLI 214 (366)
T ss_pred CCceEEEEecc-cccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhh--cCccEEEEeccccchh
Confidence 45666677766 333333 3344568999999999999888751 11 0111 11111 000001111
Q ss_pred ----CC-----CCCCceEEcCCCCEEEEEecCC--CcceeeeEeeCccceeeeeccccce------eeeeeccccCCCcE
Q 024436 153 ----LP-----GFPDNIKRSPRGGFWVGIHSRR--KGISKLVLSFPWIGNVLIKLPIDIV------KIHSSLVKLSGNGG 215 (268)
Q Consensus 153 ----l~-----g~Pdgia~d~dG~l~va~~~~~--~~~~~~v~~~~~~g~~l~~i~~~~~------~~~~~~~~~~~~~~ 215 (268)
+| ---+-+++++||++|.++.-.+ ...-.+|..+.+ |+-+..++.|.+ ++...+...... +
T Consensus 215 ekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~-g~~l~~~~~pee~~~~~anYigsiA~n~~~-g 292 (366)
T COG3490 215 EKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRK-GEPLEFLDLPEEQTAAFANYIGSIAANRRD-G 292 (366)
T ss_pred hhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccC-CCcCcccCCCHHHHHHHHhhhhheeecccC-C
Confidence 22 0136789999999999886432 222222444444 444444554422 111111122233 6
Q ss_pred EEEEECCCCCEEEEEEcCCCCceec-----eEEEEEeCCEEEEeeCCCCe
Q 024436 216 MAMRISEQGNVLEILEEIGRKMWRS-----ISEVEEKDGNLWIGSVNMPY 260 (268)
Q Consensus 216 ~~~~~~~~G~~~~~~~~~~g~~~~~-----~s~~~~~~g~Lyv~s~~~~~ 260 (268)
++..-+|.|+...+++-..|.++.. .++++...+-.-++|-.+..
T Consensus 293 lV~lTSP~GN~~vi~da~tG~vv~~a~l~daaGva~~~~gf~vssg~G~~ 342 (366)
T COG3490 293 LVALTSPRGNRAVIWDAATGAVVSEAALPDAAGVAAAKGGFAVSSGQGRI 342 (366)
T ss_pred eEEEecCCCCeEEEEEcCCCcEEecccccccccceeccCceEEecCCceE
Confidence 7777888888888888777765433 33344444444444444433
No 83
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=97.49 E-value=0.015 Score=47.96 Aligned_cols=101 Identities=17% Similarity=0.280 Sum_probs=61.3
Q ss_pred ceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecC--CcEEEEEEccCCCCCceeEEEeC-CCCCCceEEcCCC
Q 024436 90 GRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETT--SCRILRYWLKTSKAGTIEIVAQL-PGFPDNIKRSPRG 166 (268)
Q Consensus 90 g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~--~~~I~~~~~~~~~~g~~~~~~~l-~g~Pdgia~d~dG 166 (268)
..+..+|.+...+..+. -...|.|.|+|+|++|.++... .+.|..||.+. ...+... ......++++|||
T Consensus 83 ~~v~lyd~~~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~-----~~~i~~~~~~~~t~~~WsPdG 155 (194)
T PF08662_consen 83 AKVTLYDVKGKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK-----KKKISTFEHSDATDVEWSPDG 155 (194)
T ss_pred cccEEEcCcccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC-----CEEeeccccCcEEEEEEcCCC
Confidence 36667776633333332 2456899999999988887643 46799999873 2333322 1246789999999
Q ss_pred CEEEEEecC-CCcceeeeEeeCccceeeeecc
Q 024436 167 GFWVGIHSR-RKGISKLVLSFPWIGNVLIKLP 197 (268)
Q Consensus 167 ~l~va~~~~-~~~~~~~v~~~~~~g~~l~~i~ 197 (268)
+.+++.... +.++..-+..+...|+++.+.+
T Consensus 156 r~~~ta~t~~r~~~dng~~Iw~~~G~~l~~~~ 187 (194)
T PF08662_consen 156 RYLATATTSPRLRVDNGFKIWSFQGRLLYKKP 187 (194)
T ss_pred CEEEEEEeccceeccccEEEEEecCeEeEecc
Confidence 977655432 2222222444555566655544
No 84
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=97.49 E-value=0.0029 Score=58.74 Aligned_cols=71 Identities=21% Similarity=0.225 Sum_probs=50.6
Q ss_pred eEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCc---e-eEEEe-CCCCCCceEEcCCC-------CE
Q 024436 101 QVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGT---I-EIVAQ-LPGFPDNIKRSPRG-------GF 168 (268)
Q Consensus 101 ~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~---~-~~~~~-l~g~Pdgia~d~dG-------~l 168 (268)
+++++++++..|-+|+|.||| .|||++...++|++++.++..... . .++.. ..+.+-||+++|+= .+
T Consensus 21 ~~~~va~GL~~Pw~maflPDG-~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~l 99 (454)
T TIGR03606 21 DKKVLLSGLNKPWALLWGPDN-QLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYV 99 (454)
T ss_pred EEEEEECCCCCceEEEEcCCC-eEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEE
Confidence 567788999999999999999 599999878999999865422100 0 11111 12457899998762 58
Q ss_pred EEEE
Q 024436 169 WVGI 172 (268)
Q Consensus 169 ~va~ 172 (268)
|++.
T Consensus 100 Yvsy 103 (454)
T TIGR03606 100 YISY 103 (454)
T ss_pred EEEE
Confidence 8876
No 85
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=97.48 E-value=0.007 Score=49.93 Aligned_cols=117 Identities=16% Similarity=0.186 Sum_probs=74.1
Q ss_pred CEEEEecCCCCCcceEEECCCCCEEEEEe--CCCeEEEEeCCCCeEEEEE-------EcCCCCCeeEEEeecCCcceEEE
Q 024436 24 GVVQYQIEGAIGPESLAFDALGEGPYTGV--SDGRIIKWHQDQRRWLHFA-------RTSPNRNHISVILSGDKTGRLMK 94 (268)
Q Consensus 24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~--~~g~I~~~~~~g~~~~~~~-------~~~~~~~~~~~~~~~~~~g~v~~ 94 (268)
.+..+.+..-..-..++.+|+|+.+++-. ...+|..++.+++.+..+. .-+|.++++.....+...|.|..
T Consensus 50 ~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~ 129 (194)
T PF08662_consen 50 PVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEF 129 (194)
T ss_pred ccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEE
Confidence 45556655433478999999999775543 3467777787765444332 12455566544333445688889
Q ss_pred EeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecC-----CcEEEEEEccC
Q 024436 95 YDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETT-----SCRILRYWLKT 141 (268)
Q Consensus 95 ~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~-----~~~I~~~~~~~ 141 (268)
+|.++.+.....+. .....++|||||+++..+.+. .+.+..|+..|
T Consensus 130 wd~~~~~~i~~~~~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 130 WDVRKKKKISTFEH-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred EECCCCEEeecccc-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence 99875444332332 346899999999988777653 34556666665
No 86
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=97.48 E-value=0.00017 Score=40.05 Aligned_cols=28 Identities=18% Similarity=0.156 Sum_probs=24.8
Q ss_pred CCCcceEEECCCCCEEEEEeCCCeEEEE
Q 024436 33 AIGPESLAFDALGEGPYTGVSDGRIIKW 60 (268)
Q Consensus 33 ~~~P~gia~~~dG~~l~~~~~~g~I~~~ 60 (268)
+..|.|++++++|++++++.++++|.++
T Consensus 1 f~~P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 1 FNYPHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp BSSEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcCCcEEEEeCCCCEEEEECCCCEEEEC
Confidence 3579999999999999999999999764
No 87
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=97.45 E-value=0.0079 Score=54.69 Aligned_cols=106 Identities=12% Similarity=0.098 Sum_probs=62.6
Q ss_pred CCcceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCC-CCCceEEcCC
Q 024436 87 DKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPG-FPDNIKRSPR 165 (268)
Q Consensus 87 ~~~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g-~Pdgia~d~d 165 (268)
...|.|+.+...|+++-.-...-....+++|+.|++.||++. ..+.||+|++.... ....|.+-.+ .-.-+|...+
T Consensus 322 G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~-~~GeV~v~nl~~~~--~~~rf~D~G~v~gts~~~S~n 398 (514)
T KOG2055|consen 322 GNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASG-GTGEVYVWNLRQNS--CLHRFVDDGSVHGTSLCISLN 398 (514)
T ss_pred ccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEc-CCceEEEEecCCcc--eEEEEeecCccceeeeeecCC
Confidence 456777777776655432222223456899999999888775 45799999997432 2344544221 2345777788
Q ss_pred CCEEEEEecCCCcceeeeEeeCccceeeeeccccc
Q 024436 166 GGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDI 200 (268)
Q Consensus 166 G~l~va~~~~~~~~~~~v~~~~~~g~~l~~i~~~~ 200 (268)
|. |+|......- |..|...-.+...-|.|.
T Consensus 399 g~-ylA~GS~~Gi----VNIYd~~s~~~s~~PkPi 428 (514)
T KOG2055|consen 399 GS-YLATGSDSGI----VNIYDGNSCFASTNPKPI 428 (514)
T ss_pred Cc-eEEeccCcce----EEEeccchhhccCCCCch
Confidence 88 4555444321 555664444444445443
No 88
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.44 E-value=0.057 Score=50.12 Aligned_cols=77 Identities=16% Similarity=0.070 Sum_probs=48.4
Q ss_pred cceEEEEeCC--CCeEEEeecCCCCcceEEEccCCCEEEEEecC--CcEEEEEEccCCCCCceeEEEeCCCCCCceEEcC
Q 024436 89 TGRLMKYDPA--TKQVTVLLGNLSFPNGVALSEDGNYILLAETT--SCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSP 164 (268)
Q Consensus 89 ~g~v~~~d~~--~~~~~~~~~~~~~pnGia~spdg~~lyva~~~--~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~ 164 (268)
...||.++.+ +++.+.+..........+|+|||+.|+++... ..+|++++++++. .+.+...++......+.+
T Consensus 304 ~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~---~~~Lt~~~~~~~~p~wSp 380 (428)
T PRK01029 304 RPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGR---DYQLTTSPENKESPSWAI 380 (428)
T ss_pred CceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCC---eEEccCCCCCccceEECC
Confidence 3478888653 23445454333344568999999988876543 3579999998643 333322223456788999
Q ss_pred CCCE
Q 024436 165 RGGF 168 (268)
Q Consensus 165 dG~l 168 (268)
||+.
T Consensus 381 DG~~ 384 (428)
T PRK01029 381 DSLH 384 (428)
T ss_pred CCCE
Confidence 9873
No 89
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.41 E-value=0.038 Score=50.78 Aligned_cols=104 Identities=13% Similarity=0.194 Sum_probs=71.8
Q ss_pred eEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEe-CCCCCCceEEcCCCCEE
Q 024436 91 RLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSPRGGFW 169 (268)
Q Consensus 91 ~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~-l~g~Pdgia~d~dG~l~ 169 (268)
.+-.+|.+++++++...++..-..+.++|||+.+.+++ .+..||+++++++. .+.... -.++-.++++.++++.+
T Consensus 383 ~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaN-dr~el~vididngn---v~~idkS~~~lItdf~~~~nsr~i 458 (668)
T COG4946 383 KLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVAN-DRFELWVIDIDNGN---VRLIDKSEYGLITDFDWHPNSRWI 458 (668)
T ss_pred eEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEc-CceEEEEEEecCCC---eeEecccccceeEEEEEcCCceeE
Confidence 78889999999999999998889999999999887776 66899999998643 333322 23566788888887644
Q ss_pred EEEecCCCcceeeeEeeCccceeeeecccc
Q 024436 170 VGIHSRRKGISKLVLSFPWIGNVLIKLPID 199 (268)
Q Consensus 170 va~~~~~~~~~~~v~~~~~~g~~l~~i~~~ 199 (268)
.=.+..+ -..+-|..|...+.-+-.+.+|
T Consensus 459 AYafP~g-y~tq~Iklydm~~~Kiy~vTT~ 487 (668)
T COG4946 459 AYAFPEG-YYTQSIKLYDMDGGKIYDVTTP 487 (668)
T ss_pred EEecCcc-eeeeeEEEEecCCCeEEEecCC
Confidence 4333332 3444466666555433344433
No 90
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=97.40 E-value=0.018 Score=55.35 Aligned_cols=143 Identities=17% Similarity=0.196 Sum_probs=97.6
Q ss_pred ecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCe-EEEEE---------EcCCCCCeeEEEeecCCcceEEEEeCC
Q 024436 29 QIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRR-WLHFA---------RTSPNRNHISVILSGDKTGRLMKYDPA 98 (268)
Q Consensus 29 ~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~-~~~~~---------~~~~~~~~~~~~~~~~~~g~v~~~d~~ 98 (268)
..+.-..-.|..|+||.+++++..+|..|..|+.+... ...+. ..+|.+ |.......+++.++|..|-.
T Consensus 447 L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~G-yYFatas~D~tArLWs~d~~ 525 (707)
T KOG0263|consen 447 LYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRG-YYFATASHDQTARLWSTDHN 525 (707)
T ss_pred eecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCc-eEEEecCCCceeeeeecccC
Confidence 44444467899999999999999999999888877542 11111 112222 33334466777889988874
Q ss_pred CCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEecCC
Q 024436 99 TKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRR 176 (268)
Q Consensus 99 ~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~~~ 176 (268)
.-.+.++..+.--..+.|.|+..++ .+.+..+.+..||...+. .++.|..-.+--..+++.|+|+..++....+
T Consensus 526 -~PlRifaghlsDV~cv~FHPNs~Y~-aTGSsD~tVRlWDv~~G~--~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~ 599 (707)
T KOG0263|consen 526 -KPLRIFAGHLSDVDCVSFHPNSNYV-ATGSSDRTVRLWDVSTGN--SVRIFTGHKGPVTALAFSPCGRYLASGDEDG 599 (707)
T ss_pred -CchhhhcccccccceEEECCccccc-ccCCCCceEEEEEcCCCc--EEEEecCCCCceEEEEEcCCCceEeecccCC
Confidence 5667778888888889999998644 467788899999987532 3566643223356789999988766665554
No 91
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=97.40 E-value=0.07 Score=45.86 Aligned_cols=139 Identities=18% Similarity=0.249 Sum_probs=87.5
Q ss_pred cCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcCCCCCeeEE-----------EeecCCcceEEEEeCC
Q 024436 30 IEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRNHISV-----------ILSGDKTGRLMKYDPA 98 (268)
Q Consensus 30 ~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~~~~~~~~-----------~~~~~~~g~v~~~d~~ 98 (268)
++..+.--+++|++|.+.++++..|..|..|+.-|.........+. ++|+.- +.....+..|-.+|.+
T Consensus 102 ~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~-~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~ 180 (315)
T KOG0279|consen 102 VGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSH-REWVSCVRFSPNESNPIIVSASWDKTVKVWNLR 180 (315)
T ss_pred EecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCC-cCcEEEEEEcCCCCCcEEEEccCCceEEEEccC
Confidence 3344577899999999999999999998888765543222211111 222211 1222344556666666
Q ss_pred CCeEEE-eecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCC--CCCCceEEcCCCCEEEEEecC
Q 024436 99 TKQVTV-LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLP--GFPDNIKRSPRGGFWVGIHSR 175 (268)
Q Consensus 99 ~~~~~~-~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~--g~Pdgia~d~dG~l~va~~~~ 175 (268)
+-+++. ....-.+-|-+++||||. |-.+....+.++-|+++.++ ....++ ..-..+++.|+ ++|++....
T Consensus 181 ~~~l~~~~~gh~~~v~t~~vSpDGs-lcasGgkdg~~~LwdL~~~k-----~lysl~a~~~v~sl~fspn-rywL~~at~ 253 (315)
T KOG0279|consen 181 NCQLRTTFIGHSGYVNTVTVSPDGS-LCASGGKDGEAMLWDLNEGK-----NLYSLEAFDIVNSLCFSPN-RYWLCAATA 253 (315)
T ss_pred CcchhhccccccccEEEEEECCCCC-EEecCCCCceEEEEEccCCc-----eeEeccCCCeEeeEEecCC-ceeEeeccC
Confidence 444432 345566788999999996 77777778899999998432 122222 13567889885 677766555
Q ss_pred C
Q 024436 176 R 176 (268)
Q Consensus 176 ~ 176 (268)
.
T Consensus 254 ~ 254 (315)
T KOG0279|consen 254 T 254 (315)
T ss_pred C
Confidence 4
No 92
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.35 E-value=0.019 Score=53.78 Aligned_cols=142 Identities=22% Similarity=0.324 Sum_probs=91.2
Q ss_pred cCCCCCcceEEECCCCCEEEEEeCCCeEEEEeC-CC-CeEEEEEEc---------CCCCCeeEEEeecCCcceEEEEeCC
Q 024436 30 IEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQ-DQ-RRWLHFART---------SPNRNHISVILSGDKTGRLMKYDPA 98 (268)
Q Consensus 30 ~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~-~g-~~~~~~~~~---------~~~~~~~~~~~~~~~~g~v~~~d~~ 98 (268)
.+....-.+++++|||+.++++..|.+|..|+. +. .....+... .+.+ ..+..+..++.|..+|..
T Consensus 200 ~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g---~~i~Sgs~D~tvriWd~~ 276 (456)
T KOG0266|consen 200 SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDG---NLLVSGSDDGTVRIWDVR 276 (456)
T ss_pred cccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCC---CEEEEecCCCcEEEEecc
Confidence 344567889999999998888889999988887 33 322333211 1111 123455667788888888
Q ss_pred CCeEEEe-ecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCC---CceEEcCCCCEEEEEec
Q 024436 99 TKQVTVL-LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFP---DNIKRSPRGGFWVGIHS 174 (268)
Q Consensus 99 ~~~~~~~-~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~P---dgia~d~dG~l~va~~~ 174 (268)
+++.... ..+-..-++++|++||+.|..+ +..+.|..||+.++...-...+.... .| .-++++++|.+.+....
T Consensus 277 ~~~~~~~l~~hs~~is~~~f~~d~~~l~s~-s~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~fsp~~~~ll~~~~ 354 (456)
T KOG0266|consen 277 TGECVRKLKGHSDGISGLAFSPDGNLLVSA-SYDGTIRVWDLETGSKLCLKLLSGAE-NSAPVTSVQFSPNGKYLLSASL 354 (456)
T ss_pred CCeEEEeeeccCCceEEEEECCCCCEEEEc-CCCccEEEEECCCCceeeeecccCCC-CCCceeEEEECCCCcEEEEecC
Confidence 7766544 4444566899999999866544 77899999999864311011111111 23 67888999986665555
Q ss_pred CC
Q 024436 175 RR 176 (268)
Q Consensus 175 ~~ 176 (268)
.+
T Consensus 355 d~ 356 (456)
T KOG0266|consen 355 DR 356 (456)
T ss_pred CC
Confidence 53
No 93
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=97.34 E-value=0.0054 Score=58.80 Aligned_cols=142 Identities=17% Similarity=0.156 Sum_probs=85.2
Q ss_pred cCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCC-eEEEEEE---------cCCCCCeeEEEeecCCcceEEEEeCCC
Q 024436 30 IEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQR-RWLHFAR---------TSPNRNHISVILSGDKTGRLMKYDPAT 99 (268)
Q Consensus 30 ~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~-~~~~~~~---------~~~~~~~~~~~~~~~~~g~v~~~d~~~ 99 (268)
-+++-.-..+.|.|-|-.++++.+|+.-..|+.+-. ....|+. ..|+.+|+. ++..+..+..||-.+
T Consensus 490 ~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~a---TGSsD~tVRlWDv~~ 566 (707)
T KOG0263|consen 490 KGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVA---TGSSDRTVRLWDVST 566 (707)
T ss_pred cCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccc---cCCCCceEEEEEcCC
Confidence 355545567899999986666655544434444432 1122221 135666664 223333444455555
Q ss_pred CeEEEeecCCCCc-ceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEecCCC
Q 024436 100 KQVTVLLGNLSFP-NGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRK 177 (268)
Q Consensus 100 ~~~~~~~~~~~~p-nGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~~~~ 177 (268)
|...++..+-..| .-++|||+|++| ++....+.|..||+.++.+ ...+..-.+.-.-+.+..||+++++....++
T Consensus 567 G~~VRiF~GH~~~V~al~~Sp~Gr~L-aSg~ed~~I~iWDl~~~~~--v~~l~~Ht~ti~SlsFS~dg~vLasgg~Dns 642 (707)
T KOG0263|consen 567 GNSVRIFTGHKGPVTALAFSPCGRYL-ASGDEDGLIKIWDLANGSL--VKQLKGHTGTIYSLSFSRDGNVLASGGADNS 642 (707)
T ss_pred CcEEEEecCCCCceEEEEEcCCCceE-eecccCCcEEEEEcCCCcc--hhhhhcccCceeEEEEecCCCEEEecCCCCe
Confidence 5555555444444 689999999866 5666789999999975321 1111111345678899999999988877764
No 94
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=97.34 E-value=0.12 Score=47.35 Aligned_cols=136 Identities=19% Similarity=0.222 Sum_probs=93.1
Q ss_pred CCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEc---------CCCCCeeEEEeecCCcceEEEEeCCCCeEEE
Q 024436 34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFART---------SPNRNHISVILSGDKTGRLMKYDPATKQVTV 104 (268)
Q Consensus 34 ~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~---------~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~ 104 (268)
+.-.+++...+|++++++..+|.+..|+.+|.....+... .+.+.|+ +++...+++..+|.-+|++.+
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yi---lS~~vD~ttilwd~~~g~~~q 312 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYI---LSGGVDGTTILWDAHTGTVKQ 312 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEE---EeccCCccEEEEeccCceEEE
Confidence 5788999999999999999999999999998754443321 1222333 345667888899988888776
Q ss_pred eecCCCCc-ceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEecCC
Q 024436 105 LLGNLSFP-NGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRR 176 (268)
Q Consensus 105 ~~~~~~~p-nGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~~~ 176 (268)
..+--..| -.+.|-.+. =|++....++|+++.++.... ...|..-.|-...|.+++.|.|+.++....
T Consensus 313 ~f~~~s~~~lDVdW~~~~--~F~ts~td~~i~V~kv~~~~P--~~t~~GH~g~V~alk~n~tg~LLaS~SdD~ 381 (524)
T KOG0273|consen 313 QFEFHSAPALDVDWQSND--EFATSSTDGCIHVCKVGEDRP--VKTFIGHHGEVNALKWNPTGSLLASCSDDG 381 (524)
T ss_pred eeeeccCCccceEEecCc--eEeecCCCceEEEEEecCCCc--ceeeecccCceEEEEECCCCceEEEecCCC
Confidence 65444445 456665443 456777888999999875321 233332224466888888888888776554
No 95
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=97.33 E-value=0.018 Score=52.46 Aligned_cols=127 Identities=17% Similarity=0.065 Sum_probs=73.9
Q ss_pred CCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcCCCCCeeEEEeecCCcceEEEEeCCCCeEEEeecCCCCc
Q 024436 33 AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFP 112 (268)
Q Consensus 33 ~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p 112 (268)
+..|.+++..|+|.++++....|++..+...+...... ... ..... ...+.+.-++. ...++++...|
T Consensus 66 Le~p~~~~~lP~G~~~v~er~~G~l~~i~~g~~~~~~~---~~~----~~~~~-~~~~Gll~~al----~~~fa~~~~~~ 133 (399)
T COG2133 66 LEHPWGLARLPDGVLLVTERPTGRLRLISDGGSASPPV---STV----PIVLL-RGQGGLLDIAL----SPDFAQGRLVY 133 (399)
T ss_pred ccCchhheecCCceEEEEccCCccEEEecCCCcccccc---ccc----ceEEe-ccCCCccceEe----cccccccceee
Confidence 67899999999997666655568776555433210000 000 00111 11122222211 12356778889
Q ss_pred ceEEEccCCCEEEEEecCCcEEEEEEccCCCCCc-eeEEEeCCCC----CCceEEcCCCCEEEEEecC
Q 024436 113 NGVALSEDGNYILLAETTSCRILRYWLKTSKAGT-IEIVAQLPGF----PDNIKRSPRGGFWVGIHSR 175 (268)
Q Consensus 113 nGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~-~~~~~~l~g~----Pdgia~d~dG~l~va~~~~ 175 (268)
.++++..+ .+|++++ ..+.+|+....++.. ...+.++|+. -.-|+++|||+|||+....
T Consensus 134 ~~~a~~~~--~~~~~n~--~~~~~~~~g~~~l~~~~~i~~~lP~~~~H~g~~l~f~pDG~Lyvs~G~~ 197 (399)
T COG2133 134 FGISEPGG--GLYVANR--VAIGRLPGGDTKLSEPKVIFRGIPKGGHHFGGRLVFGPDGKLYVTTGSN 197 (399)
T ss_pred eEEEeecC--CceEEEE--EEEEEcCCCccccccccEEeecCCCCCCcCcccEEECCCCcEEEEeCCC
Confidence 99999865 3888864 456677722233433 3445557643 2469999999999988776
No 96
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=97.30 E-value=0.01 Score=54.91 Aligned_cols=143 Identities=17% Similarity=0.180 Sum_probs=89.2
Q ss_pred CCCEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEE------------cCCCCCeeEEEeecCCc
Q 024436 22 TQGVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFAR------------TSPNRNHISVILSGDKT 89 (268)
Q Consensus 22 ~~~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~------------~~~~~~~~~~~~~~~~~ 89 (268)
.+.+..++++- .|.++|+.|+++.+.++-.|++|..+...|......+. -+|+..|+. ..+..
T Consensus 434 ~~~~~~~~~~y--~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla---~~Da~ 508 (603)
T KOG0318|consen 434 QTKVSSIPIGY--ESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLA---AGDAS 508 (603)
T ss_pred CCcceeecccc--ccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEE---EeccC
Confidence 34455556553 68899999999988888888888877766532222221 134444443 34566
Q ss_pred ceEEEEeCCCCeEEEee--cCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeC-CCCCCceEEcCCC
Q 024436 90 GRLMKYDPATKQVTVLL--GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL-PGFPDNIKRSPRG 166 (268)
Q Consensus 90 g~v~~~d~~~~~~~~~~--~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l-~g~Pdgia~d~dG 166 (268)
+.+..||..+++...-. -+-..-|+++|+|+.+ ++.+.+..-.|.+|.++.+. +....... ++...++++-.+-
T Consensus 509 rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~-~vATGSlDt~Viiysv~kP~--~~i~iknAH~~gVn~v~wlde~ 585 (603)
T KOG0318|consen 509 RKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNK-LVATGSLDTNVIIYSVKKPA--KHIIIKNAHLGGVNSVAWLDES 585 (603)
T ss_pred CcEEEEEcccCceecceeeeeeeeEEEEEeCCCce-EEEeccccceEEEEEccChh--hheEeccccccCceeEEEecCc
Confidence 78888888876663322 2334568999999986 66788888899999998532 12111111 2236667765444
Q ss_pred CEEEEE
Q 024436 167 GFWVGI 172 (268)
Q Consensus 167 ~l~va~ 172 (268)
.+.-+.
T Consensus 586 tvvSsG 591 (603)
T KOG0318|consen 586 TVVSSG 591 (603)
T ss_pred eEEecc
Confidence 444333
No 97
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=97.26 E-value=0.13 Score=46.75 Aligned_cols=139 Identities=17% Similarity=0.247 Sum_probs=77.1
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcC------------CCCCeeEEEeecCC----cceEEEEeCCCCeEEEee
Q 024436 43 ALGEGPYTGVSDGRIIKWHQDQRRWLHFARTS------------PNRNHISVILSGDK----TGRLMKYDPATKQVTVLL 106 (268)
Q Consensus 43 ~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~------------~~~~~~~~~~~~~~----~g~v~~~d~~~~~~~~~~ 106 (268)
|...+++.....+-++.++.+|+.+..+.... .++..-....+.+. .-++|++|++++.++.+.
T Consensus 66 p~kSlIigTdK~~GL~VYdL~Gk~lq~~~~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~ 145 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDGKELQSLPVGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVT 145 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS-EEEEE-SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-C
T ss_pred cccceEEEEeCCCCEEEEcCCCcEEEeecCCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcC
Confidence 44566666667788888999998543332100 00011011222222 236999999888776653
Q ss_pred -------cCCCCcceEEEc--c-CCCEEEEEecCCcEEEEEEccCCCCCc--eeEEEe--CCCCCCceEEcCC-CCEEEE
Q 024436 107 -------GNLSFPNGVALS--E-DGNYILLAETTSCRILRYWLKTSKAGT--IEIVAQ--LPGFPDNIKRSPR-GGFWVG 171 (268)
Q Consensus 107 -------~~~~~pnGia~s--p-dg~~lyva~~~~~~I~~~~~~~~~~g~--~~~~~~--l~g~Pdgia~d~d-G~l~va 171 (268)
..+.-|.|+++- | +|+.-.+.....+++..|.+.....+. .+.+.+ +++.|.|+++|.+ |.||++
T Consensus 146 ~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LYvg 225 (381)
T PF02333_consen 146 DPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLYVG 225 (381)
T ss_dssp BTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEEEE
T ss_pred CCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEEEe
Confidence 334557899985 3 455222334456888888885221121 223333 5668999999975 679999
Q ss_pred EecCCCcceeeeEeeC
Q 024436 172 IHSRRKGISKLVLSFP 187 (268)
Q Consensus 172 ~~~~~~~~~~~v~~~~ 187 (268)
+...+ |++|.
T Consensus 226 EE~~G------IW~y~ 235 (381)
T PF02333_consen 226 EEDVG------IWRYD 235 (381)
T ss_dssp ETTTE------EEEEE
T ss_pred cCccE------EEEEe
Confidence 98875 66654
No 98
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.26 E-value=0.019 Score=51.71 Aligned_cols=134 Identities=16% Similarity=0.054 Sum_probs=85.9
Q ss_pred CCcceEEECCCCCEEEEEeCC--CeEEEEeCCCCe--EEE---------EEEcCCCCCeeEEEeecCCcceEEEEeCCCC
Q 024436 34 IGPESLAFDALGEGPYTGVSD--GRIIKWHQDQRR--WLH---------FARTSPNRNHISVILSGDKTGRLMKYDPATK 100 (268)
Q Consensus 34 ~~P~gia~~~dG~~l~~~~~~--g~I~~~~~~g~~--~~~---------~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 100 (268)
.--.-+.|+++|+.+.++..| .-|+.+..+++. ... +..-+|+..|+. +......+..+|.++|
T Consensus 225 dEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLl---aCg~~e~~~lwDv~tg 301 (519)
T KOG0293|consen 225 DEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLL---ACGFDEVLSLWDVDTG 301 (519)
T ss_pred CcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEE---ecCchHheeeccCCcc
Confidence 345678899999988887765 445555667651 011 112256655553 3344556888888888
Q ss_pred eEEEeecCC--CCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEe
Q 024436 101 QVTVLLGNL--SFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIH 173 (268)
Q Consensus 101 ~~~~~~~~~--~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~ 173 (268)
......... ..+..-+|.|||.. +|+.+..+.|..|+.+|...+..+-+. .| ....+++.+||...+...
T Consensus 302 d~~~~y~~~~~~S~~sc~W~pDg~~-~V~Gs~dr~i~~wdlDgn~~~~W~gvr-~~-~v~dlait~Dgk~vl~v~ 373 (519)
T KOG0293|consen 302 DLRHLYPSGLGFSVSSCAWCPDGFR-FVTGSPDRTIIMWDLDGNILGNWEGVR-DP-KVHDLAITYDGKYVLLVT 373 (519)
T ss_pred hhhhhcccCcCCCcceeEEccCCce-eEecCCCCcEEEecCCcchhhcccccc-cc-eeEEEEEcCCCcEEEEEe
Confidence 776554332 34567899999976 578888899999999985433332211 12 246789999997444443
No 99
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=97.25 E-value=0.023 Score=56.40 Aligned_cols=168 Identities=15% Similarity=0.188 Sum_probs=93.6
Q ss_pred CCcceEEECCCCCEEEEEeCCCeEEEEeCCCCe-EEEEEEcCCCCCeeEEEeecCCcceEEEEeCCCCeEEEeecCCCCc
Q 024436 34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRR-WLHFARTSPNRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFP 112 (268)
Q Consensus 34 ~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p 112 (268)
..-.++.+++||..++++.+|.-|..|...+.. -..+... .....+-.+ ..+..+..+-.--
T Consensus 70 ~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~-------------g~~~~vE~w----k~~~~l~~H~~DV 132 (942)
T KOG0973|consen 70 GSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGST-------------GGAKNVESW----KVVSILRGHDSDV 132 (942)
T ss_pred CceeEEEECCCCCeEeeccCcceEEEeeecccCCccccccc-------------cccccccee----eEEEEEecCCCcc
Confidence 356777899999988888877777666654210 0011000 000011111 0112222222233
Q ss_pred ceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEecCCCcceeeeEeeC-ccce
Q 024436 113 NGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFP-WIGN 191 (268)
Q Consensus 113 nGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~~~~~~~~~v~~~~-~~g~ 191 (268)
..++|+||+. ++++-+..++|..|+... ....+++..-.+.+-|+.+||-|+++.+....+. |..+. .+-.
T Consensus 133 ~Dv~Wsp~~~-~lvS~s~DnsViiwn~~t--F~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrt-----ikvwrt~dw~ 204 (942)
T KOG0973|consen 133 LDVNWSPDDS-LLVSVSLDNSVIIWNAKT--FELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRT-----LKVWRTSDWG 204 (942)
T ss_pred ceeccCCCcc-EEEEecccceEEEEcccc--ceeeeeeecccccccceEECCccCeeeeecCCce-----EEEEEcccce
Confidence 4799999986 778999999999998653 2223333333467999999999999888887764 33332 2233
Q ss_pred eeeeccccceeeeeeccccCCCcEEEEEECC--CCCEEEEEEcCC
Q 024436 192 VLIKLPIDIVKIHSSLVKLSGNGGMAMRISE--QGNVLEILEEIG 234 (268)
Q Consensus 192 ~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~G~~~~~~~~~~ 234 (268)
+..+|.-|.+. .+.+....++++ ||+.+.+-+.-+
T Consensus 205 i~k~It~pf~~--------~~~~T~f~RlSWSPDG~~las~nA~n 241 (942)
T KOG0973|consen 205 IEKSITKPFEE--------SPLTTFFLRLSWSPDGHHLASPNAVN 241 (942)
T ss_pred eeEeeccchhh--------CCCcceeeecccCCCcCeecchhhcc
Confidence 44555444321 111123444443 677776655433
No 100
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.23 E-value=0.095 Score=43.78 Aligned_cols=163 Identities=19% Similarity=0.262 Sum_probs=88.8
Q ss_pred CCcceEEEEeCCCCeEEEeecCCCCc-ceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEE-e---CCC--CCCc
Q 024436 87 DKTGRLMKYDPATKQVTVLLGNLSFP-NGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVA-Q---LPG--FPDN 159 (268)
Q Consensus 87 ~~~g~v~~~d~~~~~~~~~~~~~~~p-nGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~-~---l~g--~Pdg 159 (268)
...+.|+.+|+.+|++.--.+. ..+ .......++ .+||.. ..++|+.++...++. .+. . .+. .-..
T Consensus 43 ~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~~~-~v~v~~-~~~~l~~~d~~tG~~----~W~~~~~~~~~~~~~~~ 115 (238)
T PF13360_consen 43 SGDGNLYALDAKTGKVLWRFDL-PGPISGAPVVDGG-RVYVGT-SDGSLYALDAKTGKV----LWSIYLTSSPPAGVRSS 115 (238)
T ss_dssp ETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEEETT-EEEEEE-TTSEEEEEETTTSCE----EEEEEE-SSCTCSTB--
T ss_pred cCCCEEEEEECCCCCEEEEeec-cccccceeeeccc-cccccc-ceeeeEecccCCcce----eeeeccccccccccccc
Confidence 4678999999988876432221 111 111233344 688876 345999999664321 222 1 111 1112
Q ss_pred eEEcCCC-CEEEEEecCCCcceeeeEe-eCccceeeeecccccee----e-------eeeccccCCCcEEEEEECCCCCE
Q 024436 160 IKRSPRG-GFWVGIHSRRKGISKLVLS-FPWIGNVLIKLPIDIVK----I-------HSSLVKLSGNGGMAMRISEQGNV 226 (268)
Q Consensus 160 ia~d~dG-~l~va~~~~~~~~~~~v~~-~~~~g~~l~~i~~~~~~----~-------~~~~~~~~~~~~~~~~~~~~G~~ 226 (268)
+....+| .++++...+. |.. ...+|+++...+..... . ..++ ... +.++..+.+|++
T Consensus 116 ~~~~~~~~~~~~~~~~g~------l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~v~~~~~~g~~ 185 (238)
T PF13360_consen 116 SSPAVDGDRLYVGTSSGK------LVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPV---ISD-GRVYVSSGDGRV 185 (238)
T ss_dssp SEEEEETTEEEEEETCSE------EEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEE---CCT-TEEEEECCTSSE
T ss_pred cCceEecCEEEEEeccCc------EEEEecCCCcEEEEeecCCCCCCcceeeecccccceE---EEC-CEEEEEcCCCeE
Confidence 2222234 4666665443 333 45789987777654311 0 1111 112 356777777775
Q ss_pred EEEEEcCCCCcee-----ceEE-EEEeCCEEEEeeCCCCeEEEEeCCC
Q 024436 227 LEILEEIGRKMWR-----SISE-VEEKDGNLWIGSVNMPYAGLYNYSS 268 (268)
Q Consensus 227 ~~~~~~~~g~~~~-----~~s~-~~~~~g~Lyv~s~~~~~v~~~~~~~ 268 (268)
+.. +-..|+.++ .... ....++.||+++ .+.+|..+|+++
T Consensus 186 ~~~-d~~tg~~~w~~~~~~~~~~~~~~~~~l~~~~-~~~~l~~~d~~t 231 (238)
T PF13360_consen 186 VAV-DLATGEKLWSKPISGIYSLPSVDGGTLYVTS-SDGRLYALDLKT 231 (238)
T ss_dssp EEE-ETTTTEEEEEECSS-ECECEECCCTEEEEEE-TTTEEEEEETTT
T ss_pred EEE-ECCCCCEEEEecCCCccCCceeeCCEEEEEe-CCCEEEEEECCC
Confidence 555 555665322 1222 345789999999 899999999875
No 101
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=97.14 E-value=0.0078 Score=56.40 Aligned_cols=70 Identities=20% Similarity=0.365 Sum_probs=51.9
Q ss_pred cCCCCcceEEEccCCCEEEEEecCCc----------------EEEEEEccCC----CCCceeEEEeC--C---C------
Q 024436 107 GNLSFPNGVALSEDGNYILLAETTSC----------------RILRYWLKTS----KAGTIEIVAQL--P---G------ 155 (268)
Q Consensus 107 ~~~~~pnGia~spdg~~lyva~~~~~----------------~I~~~~~~~~----~~g~~~~~~~l--~---g------ 155 (268)
..+..|.+|++.|+...+|++.+.+. +|++|-..+. ...+.+.|... + .
T Consensus 414 T~mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~~ 493 (616)
T COG3211 414 TPMDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASAN 493 (616)
T ss_pred ccccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccccC
Confidence 34678999999999888999987654 6888877642 22345555541 1 1
Q ss_pred -------CCCceEEcCCCCEEEEEecCC
Q 024436 156 -------FPDNIKRSPRGGFWVGIHSRR 176 (268)
Q Consensus 156 -------~Pdgia~d~dG~l~va~~~~~ 176 (268)
.||||++|+.|+||++.-+..
T Consensus 494 ~~~~~f~~PDnl~fD~~GrLWi~TDg~~ 521 (616)
T COG3211 494 INANWFNSPDNLAFDPWGRLWIQTDGSG 521 (616)
T ss_pred cccccccCCCceEECCCCCEEEEecCCC
Confidence 399999999999999987665
No 102
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.11 E-value=0.13 Score=43.01 Aligned_cols=165 Identities=18% Similarity=0.192 Sum_probs=88.1
Q ss_pred cceEEEEeCCCCeEEEeecCC-CCcceE--EEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEE-eCCCCCCceEEcC
Q 024436 89 TGRLMKYDPATKQVTVLLGNL-SFPNGV--ALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVA-QLPGFPDNIKRSP 164 (268)
Q Consensus 89 ~g~v~~~d~~~~~~~~~~~~~-~~pnGi--a~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~-~l~g~Pdgia~d~ 164 (268)
+|.|..+|+.+|+..--..-- .....+ ++. +++++|+++ ..+.|+.++.++++ ..+. ++++.......-.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~v~~~~-~~~~l~~~d~~tG~----~~W~~~~~~~~~~~~~~~ 75 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVP-DGGRVYVAS-GDGNLYALDAKTGK----VLWRFDLPGPISGAPVVD 75 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEE-ETTEEEEEE-TTSEEEEEETTTSE----EEEEEECSSCGGSGEEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEE-eCCEEEEEc-CCCEEEEEECCCCC----EEEEeeccccccceeeec
Confidence 467888888767543211110 133344 333 455799984 77899999986432 2222 2333222222334
Q ss_pred CCCEEEEEecCCCcceeeeEee-Cccceeeeec-ccc--ce-------e-ee--eeccccCCCcEEEEEECC-CCCEEEE
Q 024436 165 RGGFWVGIHSRRKGISKLVLSF-PWIGNVLIKL-PID--IV-------K-IH--SSLVKLSGNGGMAMRISE-QGNVLEI 229 (268)
Q Consensus 165 dG~l~va~~~~~~~~~~~v~~~-~~~g~~l~~i-~~~--~~-------~-~~--~~~~~~~~~~~~~~~~~~-~G~~~~~ 229 (268)
++.+|++...+ . +..+ ..+|+++.+. ... .. . +. .++.. ... +.++.+|+ +|+++..
T Consensus 76 ~~~v~v~~~~~--~----l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-g~l~~~d~~tG~~~w~ 147 (238)
T PF13360_consen 76 GGRVYVGTSDG--S----LYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVG-TSS-GKLVALDPKTGKLLWK 147 (238)
T ss_dssp TTEEEEEETTS--E----EEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEE-ETC-SEEEEEETTTTEEEEE
T ss_pred cccccccccee--e----eEecccCCcceeeeeccccccccccccccCceEecCEEEEE-ecc-CcEEEEecCCCcEEEE
Confidence 56788877444 2 3334 4788887764 211 00 0 00 01111 112 56888886 5999888
Q ss_pred EEcCCCCcee------c-eEEEEEeCCEEEEeeCCCCeEEEEeCCC
Q 024436 230 LEEIGRKMWR------S-ISEVEEKDGNLWIGSVNMPYAGLYNYSS 268 (268)
Q Consensus 230 ~~~~~g~~~~------~-~s~~~~~~g~Lyv~s~~~~~v~~~~~~~ 268 (268)
+.-...+... . ....+..++++|+++..+..+++ ++++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~t 192 (238)
T PF13360_consen 148 YPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAV-DLAT 192 (238)
T ss_dssp EESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEE-ETTT
T ss_pred eecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEE-ECCC
Confidence 8763322111 1 12334456799999988875555 7653
No 103
>PTZ00421 coronin; Provisional
Probab=97.11 E-value=0.26 Score=46.62 Aligned_cols=133 Identities=13% Similarity=0.171 Sum_probs=78.8
Q ss_pred CcceEEECC-CCCEEEEEeCCCeEEEEeCCCC--------eEEEEEE---------cCCCCCeeEEEeecCCcceEEEEe
Q 024436 35 GPESLAFDA-LGEGPYTGVSDGRIIKWHQDQR--------RWLHFAR---------TSPNRNHISVILSGDKTGRLMKYD 96 (268)
Q Consensus 35 ~P~gia~~~-dG~~l~~~~~~g~I~~~~~~g~--------~~~~~~~---------~~~~~~~~~~~~~~~~~g~v~~~d 96 (268)
.-.+++++| ++++++++..|+.|..|+.... .+..+.. ..+.... .+.....++.|..||
T Consensus 77 ~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~--iLaSgs~DgtVrIWD 154 (493)
T PTZ00421 77 PIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN--VLASAGADMVVNVWD 154 (493)
T ss_pred CEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC--EEEEEeCCCEEEEEE
Confidence 457899999 8888999999999998875321 1111110 1121111 122334567888888
Q ss_pred CCCCeEEEeec-CCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCC-CCCCceEEcCCCCEEEEE
Q 024436 97 PATKQVTVLLG-NLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLP-GFPDNIKRSPRGGFWVGI 172 (268)
Q Consensus 97 ~~~~~~~~~~~-~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~-g~Pdgia~d~dG~l~va~ 172 (268)
..+++...... ....-+.++|+|||+ ++++-+.++.|..||+..+.. ...+..-. .....+.+.++++.+++.
T Consensus 155 l~tg~~~~~l~~h~~~V~sla~spdG~-lLatgs~Dg~IrIwD~rsg~~--v~tl~~H~~~~~~~~~w~~~~~~ivt~ 229 (493)
T PTZ00421 155 VERGKAVEVIKCHSDQITSLEWNLDGS-LLCTTSKDKKLNIIDPRDGTI--VSSVEAHASAKSQRCLWAKRKDLIITL 229 (493)
T ss_pred CCCCeEEEEEcCCCCceEEEEEECCCC-EEEEecCCCEEEEEECCCCcE--EEEEecCCCCcceEEEEcCCCCeEEEE
Confidence 87766544333 344568999999997 556667889999999874321 11111111 122345666766655543
No 104
>PTZ00420 coronin; Provisional
Probab=97.07 E-value=0.31 Score=46.86 Aligned_cols=105 Identities=12% Similarity=0.053 Sum_probs=67.2
Q ss_pred CCcceEEECCC-CCEEEEEeCCCeEEEEeCC-CCe-E-------EEEEE---------cCCCCCeeEEEeecCCcceEEE
Q 024436 34 IGPESLAFDAL-GEGPYTGVSDGRIIKWHQD-QRR-W-------LHFAR---------TSPNRNHISVILSGDKTGRLMK 94 (268)
Q Consensus 34 ~~P~gia~~~d-G~~l~~~~~~g~I~~~~~~-g~~-~-------~~~~~---------~~~~~~~~~~~~~~~~~g~v~~ 94 (268)
....+++++|+ +++++++..|+.|..|+.. +.. . ..+.. ..|...++ +.+...++.|..
T Consensus 75 ~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~i--LaSgS~DgtIrI 152 (568)
T PTZ00420 75 SSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYI--MCSSGFDSFVNI 152 (568)
T ss_pred CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeE--EEEEeCCCeEEE
Confidence 46789999997 7889999999999988853 210 0 01110 01222222 123344677888
Q ss_pred EeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccC
Q 024436 95 YDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT 141 (268)
Q Consensus 95 ~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~ 141 (268)
||..+++.............++|+|||+.| ++.+..+.|..||+..
T Consensus 153 WDl~tg~~~~~i~~~~~V~SlswspdG~lL-at~s~D~~IrIwD~Rs 198 (568)
T PTZ00420 153 WDIENEKRAFQINMPKKLSSLKWNIKGNLL-SGTCVGKHMHIIDPRK 198 (568)
T ss_pred EECCCCcEEEEEecCCcEEEEEECCCCCEE-EEEecCCEEEEEECCC
Confidence 888766543333333446789999999854 5656678999999875
No 105
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=97.07 E-value=0.053 Score=48.13 Aligned_cols=125 Identities=18% Similarity=0.240 Sum_probs=79.4
Q ss_pred HhhhhcCCCEEEEecCC-CCCcceEEECCCCCEEEEEeCCCeEEEEeCCCC--eEEEEEEcCCCC------CeeEEEeec
Q 024436 16 LFINSSTQGVVQYQIEG-AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQR--RWLHFARTSPNR------NHISVILSG 86 (268)
Q Consensus 16 ~~~~~~~~~~~~i~~~~-~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~--~~~~~~~~~~~~------~~~~~~~~~ 86 (268)
+|+|-...+=....+.+ -..-..+.|+.||.++.++.-+|.|..+..+.+ .|.-. ....+= +-...++.+
T Consensus 88 AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~-~e~~dieWl~WHp~a~illAG 166 (399)
T KOG0296|consen 88 AFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLD-QEVEDIEWLKWHPRAHILLAG 166 (399)
T ss_pred EEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEee-cccCceEEEEecccccEEEee
Confidence 45665555334444443 246788899999999999888999988865433 22211 000000 112344577
Q ss_pred CCcceEEEEeCCCCe-EEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCC
Q 024436 87 DKTGRLMKYDPATKQ-VTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS 142 (268)
Q Consensus 87 ~~~g~v~~~d~~~~~-~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~ 142 (268)
...|.+|.|...++. .+.+..+-...+.=.|.|||+++... ..++.|.+|++..+
T Consensus 167 ~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tg-y~dgti~~Wn~ktg 222 (399)
T KOG0296|consen 167 STDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTG-YDDGTIIVWNPKTG 222 (399)
T ss_pred cCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEE-ecCceEEEEecCCC
Confidence 788999988877633 44444444444566889999977655 45799999999854
No 106
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=97.06 E-value=0.16 Score=45.31 Aligned_cols=150 Identities=15% Similarity=0.182 Sum_probs=88.7
Q ss_pred CEEEEecCCCCCcceEEECCCCCEEEEEe-CCCeEEEEeCCCCeEEEEE----------EcCCCCCeeEEEeecCCcceE
Q 024436 24 GVVQYQIEGAIGPESLAFDALGEGPYTGV-SDGRIIKWHQDQRRWLHFA----------RTSPNRNHISVILSGDKTGRL 92 (268)
Q Consensus 24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~-~~g~I~~~~~~g~~~~~~~----------~~~~~~~~~~~~~~~~~~g~v 92 (268)
+.+.+..++-..-..++..+||..+++.. .+..|..|+++...-.... .-+|+..++... ..++ +
T Consensus 186 ~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaA---t~da-v 261 (445)
T KOG2139|consen 186 HLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAA---TCDA-V 261 (445)
T ss_pred chhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEe---cccc-e
Confidence 44556666656678889999999888754 5778888888753111111 113443333221 2222 2
Q ss_pred EEEe--CCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCC------C--ceeEEEeCC--------
Q 024436 93 MKYD--PATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKA------G--TIEIVAQLP-------- 154 (268)
Q Consensus 93 ~~~d--~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~------g--~~~~~~~l~-------- 154 (268)
+++= ..+...+...-+-..-.+-.++|+|++|.++-+..-+|++...++... + .....++|+
T Consensus 262 frlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~ 341 (445)
T KOG2139|consen 262 FRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQ 341 (445)
T ss_pred eeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCc
Confidence 2221 111111222222236678899999999999999999999988775311 1 111223331
Q ss_pred ----CCCCceEEcCCCCEEEEEecCCC
Q 024436 155 ----GFPDNIKRSPRGGFWVGIHSRRK 177 (268)
Q Consensus 155 ----g~Pdgia~d~dG~l~va~~~~~~ 177 (268)
|.+.-|++||.|...+..+.+..
T Consensus 342 ~l~cgeaq~lawDpsGeyLav~fKg~~ 368 (445)
T KOG2139|consen 342 RLCCGEAQCLAWDPSGEYLAVIFKGQS 368 (445)
T ss_pred ccccCccceeeECCCCCEEEEEEcCCc
Confidence 46889999999987777766543
No 107
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=97.05 E-value=0.011 Score=56.23 Aligned_cols=70 Identities=23% Similarity=0.372 Sum_probs=50.9
Q ss_pred cCCCCcceEEEccCCCEEEEEecCCc-------------------EEEEEEccCCC----CCceeEEEeC-C--------
Q 024436 107 GNLSFPNGVALSEDGNYILLAETTSC-------------------RILRYWLKTSK----AGTIEIVAQL-P-------- 154 (268)
Q Consensus 107 ~~~~~pnGia~spdg~~lyva~~~~~-------------------~I~~~~~~~~~----~g~~~~~~~l-~-------- 154 (268)
..+..|.||.++|....+|++-+.+. +|++|+.++.. ....+.+... +
T Consensus 347 T~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~ 426 (524)
T PF05787_consen 347 TPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNG 426 (524)
T ss_pred ccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccccc
Confidence 45778999999999889999977665 89999887531 0122222210 0
Q ss_pred ---------CCCCceEEcCCCCEEEEEecCC
Q 024436 155 ---------GFPDNIKRSPRGGFWVGIHSRR 176 (268)
Q Consensus 155 ---------g~Pdgia~d~dG~l~va~~~~~ 176 (268)
..||||++|++|+||++.-.+.
T Consensus 427 ~~~~~~~~f~sPDNL~~d~~G~LwI~eD~~~ 457 (524)
T PF05787_consen 427 SNKCDDNGFASPDNLAFDPDGNLWIQEDGGG 457 (524)
T ss_pred cCcccCCCcCCCCceEECCCCCEEEEeCCCC
Confidence 2599999999999999987665
No 108
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=97.04 E-value=0.14 Score=45.99 Aligned_cols=101 Identities=20% Similarity=0.274 Sum_probs=66.1
Q ss_pred cceEEECCCCCEEEEEeCCCeEEEEeCCC-Ce-----------EEEEE-----EcCCCCCeeEEEeecCCcceEEEEeCC
Q 024436 36 PESLAFDALGEGPYTGVSDGRIIKWHQDQ-RR-----------WLHFA-----RTSPNRNHISVILSGDKTGRLMKYDPA 98 (268)
Q Consensus 36 P~gia~~~dG~~l~~~~~~g~I~~~~~~g-~~-----------~~~~~-----~~~~~~~~~~~~~~~~~~g~v~~~d~~ 98 (268)
--+++.+|||+.+.++..+|.|..|+|.. .. ++..+ ...+.| + +.+..++|.+..+|..
T Consensus 160 VlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r-~---las~skDg~vrIWd~~ 235 (480)
T KOG0271|consen 160 VLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCR-R---LASSSKDGSVRIWDTK 235 (480)
T ss_pred EEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCcc-c---eecccCCCCEEEEEcc
Confidence 45789999999999999999999999742 21 01111 001111 1 1234567788888877
Q ss_pred CCeEEEee-cCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCC
Q 024436 99 TKQVTVLL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS 142 (268)
Q Consensus 99 ~~~~~~~~-~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~ 142 (268)
.++..... .+-..-..+.+.-+| +|| +.+..++|.+|+...+
T Consensus 236 ~~~~~~~lsgHT~~VTCvrwGG~g-liy-SgS~DrtIkvw~a~dG 278 (480)
T KOG0271|consen 236 LGTCVRTLSGHTASVTCVRWGGEG-LIY-SGSQDRTIKVWRALDG 278 (480)
T ss_pred CceEEEEeccCccceEEEEEcCCc-eEE-ecCCCceEEEEEccch
Confidence 55544444 333444688998776 565 7788899999998753
No 109
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.02 E-value=0.2 Score=43.65 Aligned_cols=102 Identities=14% Similarity=0.167 Sum_probs=59.1
Q ss_pred CCcceEEECCCCCEEEEEeC-CCeEEEEeCCCCeEEEEEEcC----------CCCCeeEEEeecCCcc--eEEEEeCCCC
Q 024436 34 IGPESLAFDALGEGPYTGVS-DGRIIKWHQDQRRWLHFARTS----------PNRNHISVILSGDKTG--RLMKYDPATK 100 (268)
Q Consensus 34 ~~P~gia~~~dG~~l~~~~~-~g~I~~~~~~g~~~~~~~~~~----------~~~~~~~~~~~~~~~g--~v~~~d~~~~ 100 (268)
..-.+++++||.+.+++-.+ .-.|..++.+|..+......+ ++..|+ + .+.... .++.+|+++.
T Consensus 86 ~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fv--i-~dER~~~l~~~~vd~~t~ 162 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFV--I-VDERDRALYLFTVDADTT 162 (316)
T ss_pred ccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEE--E-EehhcceEEEEEEcCCcc
Confidence 45788999999998887654 577778888887543322111 111122 1 222333 4456777643
Q ss_pred eEEE-----eecC----CCCcceEEEccCCCEEEEEecC-CcEEEEEE
Q 024436 101 QVTV-----LLGN----LSFPNGVALSEDGNYILLAETT-SCRILRYW 138 (268)
Q Consensus 101 ~~~~-----~~~~----~~~pnGia~spdg~~lyva~~~-~~~I~~~~ 138 (268)
.... -.+. -..-.|+|++|+++.|||+-.- --+|+.++
T Consensus 163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~ 210 (316)
T COG3204 163 VISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT 210 (316)
T ss_pred EEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence 2211 1111 2234599999999999998533 33566555
No 110
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=97.01 E-value=0.0043 Score=37.32 Aligned_cols=42 Identities=19% Similarity=0.246 Sum_probs=30.3
Q ss_pred cCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEc
Q 024436 119 EDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRS 163 (268)
Q Consensus 119 pdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d 163 (268)
||+++|||++...+.|.+++..... ..........|.+|+++
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~---~~~~i~vg~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNK---VIATIPVGGYPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCe---EEEEEECCCCCceEEeC
Confidence 6899999999999999999985421 11112234579999875
No 111
>PLN00181 protein SPA1-RELATED; Provisional
Probab=96.99 E-value=0.47 Score=47.57 Aligned_cols=136 Identities=15% Similarity=0.082 Sum_probs=79.9
Q ss_pred CCcceEEECCCCCEEEEEeCCCeEEEEeCCC-----Ce----EEEEEEc---------CCCCCeeEEEeecCCcceEEEE
Q 024436 34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQ-----RR----WLHFART---------SPNRNHISVILSGDKTGRLMKY 95 (268)
Q Consensus 34 ~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g-----~~----~~~~~~~---------~~~~~~~~~~~~~~~~g~v~~~ 95 (268)
..-.+++|+|+|++++++..++.|..|+.+. .. ....... .....+ +.....+|.|..|
T Consensus 484 ~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~---las~~~Dg~v~lW 560 (793)
T PLN00181 484 NLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQ---VASSNFEGVVQVW 560 (793)
T ss_pred CcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCE---EEEEeCCCeEEEE
Confidence 3467899999999999999999999887532 10 0011100 001111 2233456788888
Q ss_pred eCCCCeEEE-eecCCCCcceEEEcc-CCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEE-cCCCCEEEEE
Q 024436 96 DPATKQVTV-LLGNLSFPNGVALSE-DGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKR-SPRGGFWVGI 172 (268)
Q Consensus 96 d~~~~~~~~-~~~~~~~pnGia~sp-dg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~-d~dG~l~va~ 172 (268)
|..+++... +..+-..-+.++|+| |++ ++++-+..+.|..|++..+.. ...+. .......+.+ .++|+++++.
T Consensus 561 d~~~~~~~~~~~~H~~~V~~l~~~p~~~~-~L~Sgs~Dg~v~iWd~~~~~~--~~~~~-~~~~v~~v~~~~~~g~~latg 636 (793)
T PLN00181 561 DVARSQLVTEMKEHEKRVWSIDYSSADPT-LLASGSDDGSVKLWSINQGVS--IGTIK-TKANICCVQFPSESGRSLAFG 636 (793)
T ss_pred ECCCCeEEEEecCCCCCEEEEEEcCCCCC-EEEEEcCCCEEEEEECCCCcE--EEEEe-cCCCeEEEEEeCCCCCEEEEE
Confidence 887665433 334444567999997 665 667777889999999874221 11111 1122334555 3467766555
Q ss_pred ecCC
Q 024436 173 HSRR 176 (268)
Q Consensus 173 ~~~~ 176 (268)
...+
T Consensus 637 s~dg 640 (793)
T PLN00181 637 SADH 640 (793)
T ss_pred eCCC
Confidence 4443
No 112
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=96.97 E-value=0.029 Score=49.15 Aligned_cols=217 Identities=15% Similarity=0.144 Sum_probs=107.8
Q ss_pred EEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeC-CCCeEEEEEEcCCCCCee-------E-------EE-eecCCc
Q 024436 26 VQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQ-DQRRWLHFARTSPNRNHI-------S-------VI-LSGDKT 89 (268)
Q Consensus 26 ~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~-~g~~~~~~~~~~~~~~~~-------~-------~~-~~~~~~ 89 (268)
+.|..+.-..||+-.|+|||+.++++.-||-|-.|+- .|+.-...-.- ...+|+ . ++ .++..+
T Consensus 206 r~IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQ-Aqd~fMMmd~aVlci~FSRDsEMlAsGsqD 284 (508)
T KOG0275|consen 206 RSIKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQ-AQDNFMMMDDAVLCISFSRDSEMLASGSQD 284 (508)
T ss_pred hheecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhh-hhcceeecccceEEEeecccHHHhhccCcC
Confidence 3455565567999999999999999999999988763 44311100000 000000 0 01 122334
Q ss_pred c--eEEEEeCCCCe-EEEee-cCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCC
Q 024436 90 G--RLMKYDPATKQ-VTVLL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPR 165 (268)
Q Consensus 90 g--~v~~~d~~~~~-~~~~~-~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~d 165 (268)
| .||++.. |. ++.+. ..-..-..+.||.|+..+. +.+..+.+..-.+..++. ...|..-..+.+-..+.+|
T Consensus 285 GkIKvWri~t--G~ClRrFdrAHtkGvt~l~FSrD~SqiL-S~sfD~tvRiHGlKSGK~--LKEfrGHsSyvn~a~ft~d 359 (508)
T KOG0275|consen 285 GKIKVWRIET--GQCLRRFDRAHTKGVTCLSFSRDNSQIL-SASFDQTVRIHGLKSGKC--LKEFRGHSSYVNEATFTDD 359 (508)
T ss_pred CcEEEEEEec--chHHHHhhhhhccCeeEEEEccCcchhh-cccccceEEEeccccchh--HHHhcCccccccceEEcCC
Confidence 4 4566543 43 22222 2223345789999998775 556777766655553321 1222222235667777888
Q ss_pred CCEEEEEecCCC-cce-----eeeEeeCccce---eeeecccccee--eeeeccccCCCcEEEEEECCCCCEEEEEEcCC
Q 024436 166 GGFWVGIHSRRK-GIS-----KLVLSFPWIGN---VLIKLPIDIVK--IHSSLVKLSGNGGMAMRISEQGNVLEILEEIG 234 (268)
Q Consensus 166 G~l~va~~~~~~-~~~-----~~v~~~~~~g~---~l~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~ 234 (268)
|+-.+++...++ +++ +.+.-|.+.+. +..-++.|..+ ...|- .+ ..++.++-.|+++.++....
T Consensus 360 G~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCN--rs---ntv~imn~qGQvVrsfsSGk 434 (508)
T KOG0275|consen 360 GHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCN--RS---NTVYIMNMQGQVVRSFSSGK 434 (508)
T ss_pred CCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEc--CC---CeEEEEeccceEEeeeccCC
Confidence 876665554432 111 01222222221 12222222211 11121 11 34778888999999997532
Q ss_pred CCceeceEEEE-EeCCEEEE
Q 024436 235 RKMWRSISEVE-EKDGNLWI 253 (268)
Q Consensus 235 g~~~~~~s~~~-~~~g~Lyv 253 (268)
.+.-..+..+. +.++++|.
T Consensus 435 REgGdFi~~~lSpkGewiYc 454 (508)
T KOG0275|consen 435 REGGDFINAILSPKGEWIYC 454 (508)
T ss_pred ccCCceEEEEecCCCcEEEE
Confidence 12112233332 34555554
No 113
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.89 E-value=0.0084 Score=53.70 Aligned_cols=60 Identities=30% Similarity=0.233 Sum_probs=42.5
Q ss_pred CCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeC-------CCCCCceEEcCC----CCEEEEEec
Q 024436 110 SFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL-------PGFPDNIKRSPR----GGFWVGIHS 174 (268)
Q Consensus 110 ~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l-------~g~Pdgia~d~d----G~l~va~~~ 174 (268)
..|-.|++.|||+ |||++. .++|++++.++.. ...+.++ .+.+-||+++++ +.||++...
T Consensus 2 ~~P~~~a~~pdG~-l~v~e~-~G~i~~~~~~g~~---~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~ 72 (331)
T PF07995_consen 2 NNPRSMAFLPDGR-LLVAER-SGRIWVVDKDGSL---KTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTN 72 (331)
T ss_dssp SSEEEEEEETTSC-EEEEET-TTEEEEEETTTEE---CEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEE
T ss_pred CCceEEEEeCCCc-EEEEeC-CceEEEEeCCCcC---cceecccccccccccCCcccceeccccCCCCEEEEEEEc
Confidence 5688999999986 899998 8999999955421 1223222 235789999995 789998874
No 114
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.86 E-value=0.035 Score=48.06 Aligned_cols=90 Identities=18% Similarity=0.124 Sum_probs=52.8
Q ss_pred ecCCcceEEEEeCCCCeEEE-ee--cCCCCcceEEEccCCCEEEEEec----CCcEEEEEEccCCCCCceeEEEeCCCCC
Q 024436 85 SGDKTGRLMKYDPATKQVTV-LL--GNLSFPNGVALSEDGNYILLAET----TSCRILRYWLKTSKAGTIEIVAQLPGFP 157 (268)
Q Consensus 85 ~~~~~g~v~~~d~~~~~~~~-~~--~~~~~pnGia~spdg~~lyva~~----~~~~I~~~~~~~~~~g~~~~~~~l~g~P 157 (268)
...+.---+.+|+++++.-+ +. ++-.|=-.=.|||||++||.+|. ..+-|-+||...+ ......|..-.-.|
T Consensus 86 ARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~-fqrvgE~~t~GiGp 164 (366)
T COG3490 86 ARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG-FQRVGEFSTHGIGP 164 (366)
T ss_pred EecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc-cceecccccCCcCc
Confidence 33333345677887544322 21 22222223469999999999875 3457788887532 11112222211259
Q ss_pred CceEEcCCCCEEEEEecC
Q 024436 158 DNIKRSPRGGFWVGIHSR 175 (268)
Q Consensus 158 dgia~d~dG~l~va~~~~ 175 (268)
.-+.+-+||++.|..+++
T Consensus 165 Hev~lm~DGrtlvvanGG 182 (366)
T COG3490 165 HEVTLMADGRTLVVANGG 182 (366)
T ss_pred ceeEEecCCcEEEEeCCc
Confidence 999999999988776654
No 115
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=96.86 E-value=0.091 Score=48.20 Aligned_cols=145 Identities=14% Similarity=0.206 Sum_probs=88.7
Q ss_pred CEEEEecCCCCCcceEEECCCC-CEEEEEeCCCeEEEEeCC-CCe----------EEEEEEcCCCCCeeEEEeecCCcce
Q 024436 24 GVVQYQIEGAIGPESLAFDALG-EGPYTGVSDGRIIKWHQD-QRR----------WLHFARTSPNRNHISVILSGDKTGR 91 (268)
Q Consensus 24 ~~~~i~~~~~~~P~gia~~~dG-~~l~~~~~~g~I~~~~~~-g~~----------~~~~~~~~~~~~~~~~~~~~~~~g~ 91 (268)
++..+..+. -|.++-+.||+ ++++++..+++|..||-. |+. +....-...++.|+. ....+.
T Consensus 292 ~~~~f~~~~--~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFis----sSDdks 365 (503)
T KOG0282|consen 292 VLSRFHLDK--VPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFIS----SSDDKS 365 (503)
T ss_pred EEEEEecCC--CceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEee----eccCcc
Confidence 455555665 79999999999 888999999999999864 321 111111112222222 122334
Q ss_pred EEEEeCCCCeEEE-ee--cCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCC-CCCceeEEEe--CCCCCCceEEcCC
Q 024436 92 LMKYDPATKQVTV-LL--GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS-KAGTIEIVAQ--LPGFPDNIKRSPR 165 (268)
Q Consensus 92 v~~~d~~~~~~~~-~~--~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~-~~g~~~~~~~--l~g~Pdgia~d~d 165 (268)
+..++-+..-... .. .....| .++..|.++ .+++.+..++|..|.+... .+...+.|.. .+|++-.+.+.||
T Consensus 366 ~riWe~~~~v~ik~i~~~~~hsmP-~~~~~P~~~-~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpD 443 (503)
T KOG0282|consen 366 VRIWENRIPVPIKNIADPEMHTMP-CLTLHPNGK-WFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPD 443 (503)
T ss_pred EEEEEcCCCccchhhcchhhccCc-ceecCCCCC-eehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCC
Confidence 4444443221111 11 112223 799999997 6689999999999987643 2222334432 5689999999999
Q ss_pred CCEEEEEecCC
Q 024436 166 GGFWVGIHSRR 176 (268)
Q Consensus 166 G~l~va~~~~~ 176 (268)
|.+.+.....+
T Consensus 444 G~~l~SGdsdG 454 (503)
T KOG0282|consen 444 GRTLCSGDSDG 454 (503)
T ss_pred CCeEEeecCCc
Confidence 98766555544
No 116
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=96.81 E-value=0.028 Score=50.23 Aligned_cols=119 Identities=25% Similarity=0.205 Sum_probs=68.6
Q ss_pred CcceEEECCCCCEEEEEeCC------CeEEEEeCCCCeEEEEEEcCCCCCeeEEEeecCCcceEEEEeCCCCeEEEeecC
Q 024436 35 GPESLAFDALGEGPYTGVSD------GRIIKWHQDQRRWLHFARTSPNRNHISVILSGDKTGRLMKYDPATKQVTVLLGN 108 (268)
Q Consensus 35 ~P~gia~~~dG~~l~~~~~~------g~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~ 108 (268)
-+|||++.++|.++++.-.. .+|++++++|+....+... . -+..... +. .-...
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP--~---------------~~~~~~~-~~--~~~~~ 145 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVP--A---------------AFLPDAN-GT--SGRRN 145 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCCCcccceEccc--c---------------ccccccC-cc--ccccC
Confidence 68899998899977777777 8899988887643322100 0 0000000 00 01112
Q ss_pred CCCcceEEEccCCCEEEEEecCC---------------cEEEEEEccC-CCCCceeEEE-eCC--------CCCCceEEc
Q 024436 109 LSFPNGVALSEDGNYILLAETTS---------------CRILRYWLKT-SKAGTIEIVA-QLP--------GFPDNIKRS 163 (268)
Q Consensus 109 ~~~pnGia~spdg~~lyva~~~~---------------~~I~~~~~~~-~~~g~~~~~~-~l~--------g~Pdgia~d 163 (268)
-....||+++|||+.||++.... .||++|++.. +.. ...+. .+. ..+-.++.-
T Consensus 146 N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~--~~~~~y~ld~~~~~~~~~~isd~~al 223 (326)
T PF13449_consen 146 NRGFEGLAVSPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEP--VAEYAYPLDPPPTAPGDNGISDIAAL 223 (326)
T ss_pred CCCeEEEEECCCCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCcc--ceEEEEeCCccccccCCCCceeEEEE
Confidence 23356899999999888764322 4788888763 211 12221 222 134456666
Q ss_pred CCCCEEEEEecC
Q 024436 164 PRGGFWVGIHSR 175 (268)
Q Consensus 164 ~dG~l~va~~~~ 175 (268)
++|+++|-+...
T Consensus 224 ~d~~lLvLER~~ 235 (326)
T PF13449_consen 224 PDGRLLVLERDF 235 (326)
T ss_pred CCCcEEEEEccC
Confidence 788888877653
No 117
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=96.78 E-value=0.31 Score=42.30 Aligned_cols=144 Identities=14% Similarity=0.078 Sum_probs=91.6
Q ss_pred ecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCC-CCeEEEEEEcCCCC------C-eeEEEeecCCcceEEEEeCCCC
Q 024436 29 QIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQD-QRRWLHFARTSPNR------N-HISVILSGDKTGRLMKYDPATK 100 (268)
Q Consensus 29 ~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~-g~~~~~~~~~~~~~------~-~~~~~~~~~~~g~v~~~d~~~~ 100 (268)
..+...+-.+..|.+|++ ++++.+|.....||-. |.....|....++- + -...+.++..+..-+.+|...+
T Consensus 141 l~gHtgylScC~f~dD~~-ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~ 219 (343)
T KOG0286|consen 141 LAGHTGYLSCCRFLDDNH-ILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG 219 (343)
T ss_pred ecCccceeEEEEEcCCCc-eEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCc
Confidence 334445677778888888 8889999999999854 44444553221110 0 1122334445555555555544
Q ss_pred e-EEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEe--CCCCCCceEEcCCCCEEEEEecCC
Q 024436 101 Q-VTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ--LPGFPDNIKRSPRGGFWVGIHSRR 176 (268)
Q Consensus 101 ~-~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~--l~g~Pdgia~d~dG~l~va~~~~~ 176 (268)
. ++.+..+-.--|-+.|-|+|. -|++.+......-||+.... +...+.. .-..-..+++...|+|+.+.+...
T Consensus 220 ~c~qtF~ghesDINsv~ffP~G~-afatGSDD~tcRlyDlRaD~--~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~ 295 (343)
T KOG0286|consen 220 QCVQTFEGHESDINSVRFFPSGD-AFATGSDDATCRLYDLRADQ--ELAVYSHDSIICGITSVAFSKSGRLLFAGYDDF 295 (343)
T ss_pred ceeEeecccccccceEEEccCCC-eeeecCCCceeEEEeecCCc--EEeeeccCcccCCceeEEEcccccEEEeeecCC
Confidence 4 444555566789999999995 88999999998899986321 2333332 122367899999999877766543
No 118
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.74 E-value=0.42 Score=43.95 Aligned_cols=142 Identities=18% Similarity=0.266 Sum_probs=89.2
Q ss_pred CcceEEECCCCCEEEEEeCCCeEEEEeCCCCeE----------EEEEEcCCCCCeeEEEeecCCcceEEEEeCCCCeEE-
Q 024436 35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRW----------LHFARTSPNRNHISVILSGDKTGRLMKYDPATKQVT- 103 (268)
Q Consensus 35 ~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~----------~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~- 103 (268)
...++.|-.||+++.++...|.|..++...+.+ ..+....+..+-+ +..+.....+..+|.++..+.
T Consensus 70 ~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~--l~s~sDd~v~k~~d~s~a~v~~ 147 (487)
T KOG0310|consen 70 VVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTM--LVSGSDDKVVKYWDLSTAYVQA 147 (487)
T ss_pred ceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeE--EEecCCCceEEEEEcCCcEEEE
Confidence 467888999999888888889998888443210 0111111222212 223333444556666655543
Q ss_pred EeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeC-CCCC-CceEEcCCCCEEEEEecCCCccee
Q 024436 104 VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL-PGFP-DNIKRSPRGGFWVGIHSRRKGISK 181 (268)
Q Consensus 104 ~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l-~g~P-dgia~d~dG~l~va~~~~~~~~~~ 181 (268)
.+.+.-.+-...+++|..++++++.+..+.|..||..... ....++ .|.| ..+..=|.|.+++++.++.-++++
T Consensus 148 ~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~----~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWD 223 (487)
T KOG0310|consen 148 ELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT----SRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWD 223 (487)
T ss_pred EecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC----ceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEE
Confidence 2334455677899999988999999999999999986321 222333 2334 567777888888888777655444
Q ss_pred e
Q 024436 182 L 182 (268)
Q Consensus 182 ~ 182 (268)
.
T Consensus 224 l 224 (487)
T KOG0310|consen 224 L 224 (487)
T ss_pred e
Confidence 4
No 119
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=96.72 E-value=0.64 Score=46.02 Aligned_cols=218 Identities=17% Similarity=0.154 Sum_probs=120.1
Q ss_pred CCcceEEECCCCCEEEEEeCCCeEEEEeCCCC------------eEEEEEEcCCCCCeeEEEeecCCcceEEEEeCCCCe
Q 024436 34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQR------------RWLHFARTSPNRNHISVILSGDKTGRLMKYDPATKQ 101 (268)
Q Consensus 34 ~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~------------~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~ 101 (268)
.+-..|+++|+|+.+++...+|.|.+|..... .+...+. +...++.+..++.|.++.-..++
T Consensus 14 ~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~------~s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 14 GGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC------YSNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred CceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee------cccceEEeeccceEEEeeCCCCC
Confidence 45788999999998888777888888753211 1111111 11123344455667666655566
Q ss_pred EEEeecCCCCc-ceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEecCCCcce
Q 024436 102 VTVLLGNLSFP-NGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGIS 180 (268)
Q Consensus 102 ~~~~~~~~~~p-nGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~~~~~~~ 180 (268)
...+...+..| +.++++-+|+++ ++.+..-.|...+.++. +...++....+-.-++.+||+|++.+.....+.
T Consensus 88 ~~~iL~Rftlp~r~~~v~g~g~~i-aagsdD~~vK~~~~~D~--s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~--- 161 (933)
T KOG1274|consen 88 EDTILARFTLPIRDLAVSGSGKMI-AAGSDDTAVKLLNLDDS--SQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGK--- 161 (933)
T ss_pred ccceeeeeeccceEEEEecCCcEE-EeecCceeEEEEecccc--chheeecccCCceeeeeEcCCCCEEEEEecCce---
Confidence 66555556665 689999999744 56666667777777642 223333333333458889999987766555543
Q ss_pred eeeEeeC-ccceeeeeccccc---eee-e--eeccccCCC---------cEEEEEECCC-CCEEEEEEcCCCCceeceEE
Q 024436 181 KLVLSFP-WIGNVLIKLPIDI---VKI-H--SSLVKLSGN---------GGMAMRISEQ-GNVLEILEEIGRKMWRSISE 243 (268)
Q Consensus 181 ~~v~~~~-~~g~~l~~i~~~~---~~~-~--~~~~~~~~~---------~~~~~~~~~~-G~~~~~~~~~~g~~~~~~s~ 243 (268)
|..+. .++.+...++.-. ... . ++...-.|+ ...+..++++ +.....+.+..- -+..+.
T Consensus 162 --v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~--ss~~~~ 237 (933)
T KOG1274|consen 162 --VQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLS--SSKFSD 237 (933)
T ss_pred --EEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeeccccc--ccceEE
Confidence 44443 2333322222110 000 0 000000111 1345666664 455556655321 111344
Q ss_pred EEE-eCCEEEEeeCCCCeEEEEeCC
Q 024436 244 VEE-KDGNLWIGSVNMPYAGLYNYS 267 (268)
Q Consensus 244 ~~~-~~g~Lyv~s~~~~~v~~~~~~ 267 (268)
+.+ ..|+-.-++..++.|++-+.+
T Consensus 238 ~~wsPnG~YiAAs~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 238 LQWSPNGKYIAASTLDGQILVWNVD 262 (933)
T ss_pred EEEcCCCcEEeeeccCCcEEEEecc
Confidence 444 457777788888888888765
No 120
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=96.71 E-value=0.033 Score=52.95 Aligned_cols=66 Identities=18% Similarity=0.297 Sum_probs=37.1
Q ss_pred cCCCCcceEEEccCCCEEEEE-ecCCcEE-----------EEEEc--------cCCCCCceeEEEeCC--CCCCceEEcC
Q 024436 107 GNLSFPNGVALSEDGNYILLA-ETTSCRI-----------LRYWL--------KTSKAGTIEIVAQLP--GFPDNIKRSP 164 (268)
Q Consensus 107 ~~~~~pnGia~spdg~~lyva-~~~~~~I-----------~~~~~--------~~~~~g~~~~~~~l~--g~Pdgia~d~ 164 (268)
..+..|-+|+|+|+|+ ||++ |...+.. +.+.. .+...+....|...| .-..|++++|
T Consensus 433 ~~f~sPDNL~~d~~G~-LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~~~~~~~~~g~~~rf~~~P~gaE~tG~~fsp 511 (524)
T PF05787_consen 433 NGFASPDNLAFDPDGN-LWIQEDGGGSNNNLPGVTPDGEVYDFARNDGNNVWAYDPDTGELKRFLVGPNGAEITGPCFSP 511 (524)
T ss_pred CCcCCCCceEECCCCC-EEEEeCCCCCCcccccccccCceeeeeecccceeeeccccccceeeeccCCCCcccccceECC
Confidence 3467889999999997 5555 4443321 11211 111223333343322 2457899999
Q ss_pred CCC-EEEEEe
Q 024436 165 RGG-FWVGIH 173 (268)
Q Consensus 165 dG~-l~va~~ 173 (268)
||+ |||...
T Consensus 512 Dg~tlFvniQ 521 (524)
T PF05787_consen 512 DGRTLFVNIQ 521 (524)
T ss_pred CCCEEEEEEe
Confidence 996 777543
No 121
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=96.70 E-value=0.047 Score=48.86 Aligned_cols=133 Identities=23% Similarity=0.338 Sum_probs=84.7
Q ss_pred CcceEEECCCCCEEEEEeCCCeEEEEeCCCCe----------EEEEEEcCCCCCeeEEEeecCCcceEEEEeCCCCeE--
Q 024436 35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRR----------WLHFARTSPNRNHISVILSGDKTGRLMKYDPATKQV-- 102 (268)
Q Consensus 35 ~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~----------~~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~-- 102 (268)
.--+++|+|+|..++++.+|-.+..||.+.+. |..-..-+|++.++. ++..+|.|..+||++|+.
T Consensus 117 ~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iA---SG~~dg~I~lwdpktg~~~g 193 (480)
T KOG0271|consen 117 AVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIA---SGSKDGSIRLWDPKTGQQIG 193 (480)
T ss_pred cEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhh---ccccCCeEEEecCCCCCccc
Confidence 44578999999999999999999888887642 222223355554332 456789999999988753
Q ss_pred EEeecCCCCcceEEE-----ccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCC---CCCceEEcCCCCEEEEEec
Q 024436 103 TVLLGNLSFPNGVAL-----SEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPG---FPDNIKRSPRGGFWVGIHS 174 (268)
Q Consensus 103 ~~~~~~~~~pnGia~-----spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g---~Pdgia~d~dG~l~va~~~ 174 (268)
+.+..+-..-++++| .|..+ .+.+.+..+.|..|++..+. .+ ..+.| -...+++..+|-+|-+...
T Consensus 194 ~~l~gH~K~It~Lawep~hl~p~~r-~las~skDg~vrIWd~~~~~----~~-~~lsgHT~~VTCvrwGG~gliySgS~D 267 (480)
T KOG0271|consen 194 RALRGHKKWITALAWEPLHLVPPCR-RLASSSKDGSVRIWDTKLGT----CV-RTLSGHTASVTCVRWGGEGLIYSGSQD 267 (480)
T ss_pred ccccCcccceeEEeecccccCCCcc-ceecccCCCCEEEEEccCce----EE-EEeccCccceEEEEEcCCceEEecCCC
Confidence 234444455566665 45565 66777888999999986421 11 12222 1345566666666665554
Q ss_pred CC
Q 024436 175 RR 176 (268)
Q Consensus 175 ~~ 176 (268)
..
T Consensus 268 rt 269 (480)
T KOG0271|consen 268 RT 269 (480)
T ss_pred ce
Confidence 43
No 122
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=96.69 E-value=0.026 Score=51.63 Aligned_cols=141 Identities=21% Similarity=0.245 Sum_probs=94.0
Q ss_pred CCCcceEEECC-CCCEEEEEeCCCeEEEEeC--CCCeEEEEEEcCCC-C-----CeeEEEeecCCcceEEEEeCCCCeEE
Q 024436 33 AIGPESLAFDA-LGEGPYTGVSDGRIIKWHQ--DQRRWLHFARTSPN-R-----NHISVILSGDKTGRLMKYDPATKQVT 103 (268)
Q Consensus 33 ~~~P~gia~~~-dG~~l~~~~~~g~I~~~~~--~g~~~~~~~~~~~~-~-----~~~~~~~~~~~~g~v~~~d~~~~~~~ 103 (268)
-.+-..+-+-| .+.++.++..|++|..|+. +++.+..|...... + +-...+++..-+..|-.+|.+||++.
T Consensus 214 ~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~ 293 (503)
T KOG0282|consen 214 TKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVL 293 (503)
T ss_pred ccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEE
Confidence 45666777788 8998888888999998864 45555555432110 0 00112234445667888999999988
Q ss_pred EeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEE-eCCCCCCceEEcCCCCEEEEEecCC
Q 024436 104 VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVA-QLPGFPDNIKRSPRGGFWVGIHSRR 176 (268)
Q Consensus 104 ~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~-~l~g~Pdgia~d~dG~l~va~~~~~ 176 (268)
.-......|+.+-|.||+..+|++...+.+|..||+..+++ ...+. +| |--.-|.+=++|+-+|+.....
T Consensus 294 ~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kv--vqeYd~hL-g~i~~i~F~~~g~rFissSDdk 364 (503)
T KOG0282|consen 294 SRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKV--VQEYDRHL-GAILDITFVDEGRRFISSSDDK 364 (503)
T ss_pred EEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHH--HHHHHhhh-hheeeeEEccCCceEeeeccCc
Confidence 77777788999999999988999999999999999974321 01111 13 2234555656676666555443
No 123
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=96.64 E-value=0.13 Score=47.00 Aligned_cols=44 Identities=11% Similarity=0.069 Sum_probs=32.8
Q ss_pred eEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEE
Q 024436 91 RLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRI 134 (268)
Q Consensus 91 ~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I 134 (268)
.++..|+.+...++..-+...|.|++|+|....||++|-....+
T Consensus 220 ~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw~~e~g~d~~ 263 (399)
T COG2133 220 GIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALWTTEHGPDAL 263 (399)
T ss_pred cccccCCCCCCcceEEeccCCccceeecCCCCcEEEEecCCCcc
Confidence 45555665555566777888999999999955799999877444
No 124
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.60 E-value=0.56 Score=45.42 Aligned_cols=138 Identities=14% Similarity=0.055 Sum_probs=73.1
Q ss_pred CCcceEEECCCCCEEEEEe------CC--CeEEEEeCCCCeEEEE-EE-------cCCCCCeeEE---------EeecCC
Q 024436 34 IGPESLAFDALGEGPYTGV------SD--GRIIKWHQDQRRWLHF-AR-------TSPNRNHISV---------ILSGDK 88 (268)
Q Consensus 34 ~~P~gia~~~dG~~l~~~~------~~--g~I~~~~~~g~~~~~~-~~-------~~~~~~~~~~---------~~~~~~ 88 (268)
..+...+++|||+.++... ++ .+|+..+.++.. ..+ .. .++++.++.. +.....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~ 428 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA-VQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPA 428 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc-eeeecCCCCCCceECCCCCceEEEecCcceEEEeccCC
Confidence 4567889999999765433 12 366666654432 111 10 0122221110 011123
Q ss_pred cceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEE---EEccCCC--CCceeEEEe-CCCCCCceEE
Q 024436 89 TGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILR---YWLKTSK--AGTIEIVAQ-LPGFPDNIKR 162 (268)
Q Consensus 89 ~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~---~~~~~~~--~g~~~~~~~-l~g~Pdgia~ 162 (268)
.+.++.++.+.++.+. ..-.....+.|||||++|.+.- .++|++ .+.+++. ++....+.. +...+..+.+
T Consensus 429 ~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W 504 (591)
T PRK13616 429 TGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDW 504 (591)
T ss_pred CceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCceeecccEEeecccCCccccceE
Confidence 4566666555454443 1122477899999999887765 368887 4433322 212221221 3233577888
Q ss_pred cCCCCEEEEEecCC
Q 024436 163 SPRGGFWVGIHSRR 176 (268)
Q Consensus 163 d~dG~l~va~~~~~ 176 (268)
-.++.|+|+.....
T Consensus 505 ~~~~~L~V~~~~~~ 518 (591)
T PRK13616 505 RTGDSLVVGRSDPE 518 (591)
T ss_pred ecCCEEEEEecCCC
Confidence 88888887755443
No 125
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=96.56 E-value=0.67 Score=43.28 Aligned_cols=90 Identities=21% Similarity=0.230 Sum_probs=60.8
Q ss_pred eecCCcceEEEEeCCCCeEEEeec--CCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceE
Q 024436 84 LSGDKTGRLMKYDPATKQVTVLLG--NLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIK 161 (268)
Q Consensus 84 ~~~~~~g~v~~~d~~~~~~~~~~~--~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia 161 (268)
+++.-.|.|..++..+|.--.+.. +-..-++++.+..+. +| +-...+.++++++.+........ ..++..|-|++
T Consensus 336 ~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~-~~-t~g~Dd~l~~~~~~~~~~t~~~~-~~lg~QP~~la 412 (603)
T KOG0318|consen 336 YSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGE-LF-TIGWDDTLRVISLKDNGYTKSEV-VKLGSQPKGLA 412 (603)
T ss_pred EeeccCceEEEEecCCccccccccccccceEEEEeecCCCc-EE-EEecCCeEEEEecccCcccccce-eecCCCceeEE
Confidence 356678999999988776655542 334567899887664 65 45577899999987543333332 34666899999
Q ss_pred EcCCCCEEEEEecCC
Q 024436 162 RSPRGGFWVGIHSRR 176 (268)
Q Consensus 162 ~d~dG~l~va~~~~~ 176 (268)
+.++|.+.+.....+
T Consensus 413 v~~d~~~avv~~~~~ 427 (603)
T KOG0318|consen 413 VLSDGGTAVVACISD 427 (603)
T ss_pred EcCCCCEEEEEecCc
Confidence 999987555444443
No 126
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=96.45 E-value=0.72 Score=42.37 Aligned_cols=136 Identities=21% Similarity=0.208 Sum_probs=81.0
Q ss_pred CCcceEEECCCCCEEEEEeCCCeEEEEeCCCCe---EEEE---------EEcCCCCCeeEEEeecCCcceEEEEeCCCCe
Q 024436 34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRR---WLHF---------ARTSPNRNHISVILSGDKTGRLMKYDPATKQ 101 (268)
Q Consensus 34 ~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~---~~~~---------~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~ 101 (268)
.+-.++-|.|.-.++.++--++.+..+..||+. +... +...+++.- .++.....-.+|.||..+.+
T Consensus 214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~--~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHS--VIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred CCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCce--EEEecccceEEEEeeccccc
Confidence 467889999999988887777777666666652 1110 011122210 12233344567888888777
Q ss_pred EEEeecCCC----CcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCC-EEEEEecC
Q 024436 102 VTVLLGNLS----FPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG-FWVGIHSR 175 (268)
Q Consensus 102 ~~~~~~~~~----~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~-l~va~~~~ 175 (268)
+..+-.... .-.-..+++|+++|. ....++.|+......+.. ... ..++|...++++++||+ ||+++..+
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~fia-~~G~~G~I~lLhakT~el--i~s-~KieG~v~~~~fsSdsk~l~~~~~~G 366 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSNFIA-IAGNNGHIHLLHAKTKEL--ITS-FKIEGVVSDFTFSSDSKELLASGGTG 366 (514)
T ss_pred cccccCCCCcccchhheeEecCCCCeEE-EcccCceEEeehhhhhhh--hhe-eeeccEEeeEEEecCCcEEEEEcCCc
Confidence 765532221 224578899998654 455778888877653211 111 12567788999999997 55544333
No 127
>PTZ00420 coronin; Provisional
Probab=96.40 E-value=0.61 Score=44.90 Aligned_cols=104 Identities=13% Similarity=0.169 Sum_probs=62.7
Q ss_pred ecCCcceEEEEeCCCCe--E-------EEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCC
Q 024436 85 SGDKTGRLMKYDPATKQ--V-------TVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPG 155 (268)
Q Consensus 85 ~~~~~g~v~~~d~~~~~--~-------~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g 155 (268)
++..++.|..||..++. . ..+..+-..-+.++|+|++..++++.+..+.|..|++..+.. ...+ ..+.
T Consensus 92 SgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~--~~~i-~~~~ 168 (568)
T PTZ00420 92 SGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKR--AFQI-NMPK 168 (568)
T ss_pred EEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcE--EEEE-ecCC
Confidence 33455666666654321 1 122333345678999999987877877889999999975321 1111 1233
Q ss_pred CCCceEEcCCCCEEEEEecCCCcceeeeEee-Cccceeeeec
Q 024436 156 FPDNIKRSPRGGFWVGIHSRRKGISKLVLSF-PWIGNVLIKL 196 (268)
Q Consensus 156 ~Pdgia~d~dG~l~va~~~~~~~~~~~v~~~-~~~g~~l~~i 196 (268)
....++++++|+++++....+. |..+ ...++.+..+
T Consensus 169 ~V~SlswspdG~lLat~s~D~~-----IrIwD~Rsg~~i~tl 205 (568)
T PTZ00420 169 KLSSLKWNIKGNLLSGTCVGKH-----MHIIDPRKQEIASSF 205 (568)
T ss_pred cEEEEEECCCCCEEEEEecCCE-----EEEEECCCCcEEEEE
Confidence 4678899999998876654432 3333 3445555443
No 128
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=96.39 E-value=0.68 Score=41.38 Aligned_cols=140 Identities=18% Similarity=0.145 Sum_probs=85.3
Q ss_pred CCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEE-EEE---------EcCCCCCeeEEEeecCCcceEEEEeCCCCeE
Q 024436 33 AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWL-HFA---------RTSPNRNHISVILSGDKTGRLMKYDPATKQV 102 (268)
Q Consensus 33 ~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~-~~~---------~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~ 102 (268)
+.=-.+++++|-+..+.++..|+.|-.||.....+. .+. ..++..+|+.. ....+.|-.+|....++
T Consensus 151 lgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs---~gedk~VKCwDLe~nkv 227 (460)
T KOG0285|consen 151 LGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFS---AGEDKQVKCWDLEYNKV 227 (460)
T ss_pred cceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEE---ecCCCeeEEEechhhhh
Confidence 334578999999998888888999988886543221 111 12333456543 34456788888875543
Q ss_pred -EEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCC--CC-Cc-eEEcCCCCEEEEEecCCC
Q 024436 103 -TVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPG--FP-DN-IKRSPRGGFWVGIHSRRK 177 (268)
Q Consensus 103 -~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g--~P-dg-ia~d~dG~l~va~~~~~~ 177 (268)
+...+.+..-.++++.|--+ +.++......+.+||+... ..+..+.| .| .. ++-.-|+.++.+.....-
T Consensus 228 IR~YhGHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRtr-----~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tv 301 (460)
T KOG0285|consen 228 IRHYHGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRTR-----ASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTV 301 (460)
T ss_pred HHHhccccceeEEEeccccce-eEEecCCcceEEEeeeccc-----ceEEEecCCCCcceeEEeecCCCceEEecCCceE
Confidence 33456777788999999776 5677777788888998642 12222222 11 12 222235677777666654
Q ss_pred ccee
Q 024436 178 GISK 181 (268)
Q Consensus 178 ~~~~ 181 (268)
++++
T Consensus 302 rlWD 305 (460)
T KOG0285|consen 302 RLWD 305 (460)
T ss_pred EEee
Confidence 4433
No 129
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.36 E-value=0.34 Score=44.99 Aligned_cols=105 Identities=17% Similarity=0.198 Sum_probs=62.5
Q ss_pred CCcceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCc--EEEEEEccCCCCCceeEEEeCCCCCCceEEcC
Q 024436 87 DKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSC--RILRYWLKTSKAGTIEIVAQLPGFPDNIKRSP 164 (268)
Q Consensus 87 ~~~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~--~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~ 164 (268)
....++++++.++++...+..-...--..+|+|||+.|.++...++ .|+.+++++.. ...+.+..|.-..=.+.|
T Consensus 215 ~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~---~~~Lt~~~gi~~~Ps~sp 291 (425)
T COG0823 215 GGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN---LPRLTNGFGINTSPSWSP 291 (425)
T ss_pred CCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc---ceecccCCccccCccCCC
Confidence 3336799999988877666652223335799999999988766544 78888887643 222222233222446678
Q ss_pred CCC--EEEEEecCCCcceeeeEeeCccceeeeeccc
Q 024436 165 RGG--FWVGIHSRRKGISKLVLSFPWIGNVLIKLPI 198 (268)
Q Consensus 165 dG~--l~va~~~~~~~~~~~v~~~~~~g~~l~~i~~ 198 (268)
||+ +|++...++.+ |..+...++-..++..
T Consensus 292 dG~~ivf~Sdr~G~p~----I~~~~~~g~~~~riT~ 323 (425)
T COG0823 292 DGSKIVFTSDRGGRPQ----IYLYDLEGSQVTRLTF 323 (425)
T ss_pred CCCEEEEEeCCCCCcc----eEEECCCCCceeEeec
Confidence 886 34444444433 4445555554444443
No 130
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=96.35 E-value=0.062 Score=49.81 Aligned_cols=135 Identities=11% Similarity=0.070 Sum_probs=91.7
Q ss_pred hhhcCCCEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcCCCCCeeEEEeecCCcceEEEEeC
Q 024436 18 INSSTQGVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRNHISVILSGDKTGRLMKYDP 97 (268)
Q Consensus 18 ~~~~~~~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~ 97 (268)
.++++++-+.|.--...+-+.+.+++.|+++++-....+...++.+|..+..+. .|--|..|.
T Consensus 199 Mdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~-----------------KGDQYI~Dm 261 (641)
T KOG0772|consen 199 MDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFS-----------------KGDQYIRDM 261 (641)
T ss_pred ccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeee-----------------ccchhhhhh
Confidence 356667666665555667889999999999988888888888899987655542 122222222
Q ss_pred C--CCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeC-C-C---CCCceEEcCCCCEEE
Q 024436 98 A--TKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL-P-G---FPDNIKRSPRGGFWV 170 (268)
Q Consensus 98 ~--~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l-~-g---~Pdgia~d~dG~l~v 170 (268)
. .|.+ +.-+.-+|.|+.+..|.+.+..+.+..|+++..+ ....+|..- . | -|.-.++++||+++.
T Consensus 262 ~nTKGHi-------a~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k-~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iA 333 (641)
T KOG0772|consen 262 YNTKGHI-------AELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTK-SQLQVIKTKPAGGKRVPVTSCAWNRDGKLIA 333 (641)
T ss_pred hccCCce-------eeeeccccccCcccceEEecCCCcEEEEecCCch-hheeEEeeccCCCcccCceeeecCCCcchhh
Confidence 1 1322 2234567889988899999999999999987543 345666541 1 1 367889999999877
Q ss_pred EEecCCC
Q 024436 171 GIHSRRK 177 (268)
Q Consensus 171 a~~~~~~ 177 (268)
+....++
T Consensus 334 agc~DGS 340 (641)
T KOG0772|consen 334 AGCLDGS 340 (641)
T ss_pred hcccCCc
Confidence 6555553
No 131
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=96.35 E-value=0.11 Score=50.81 Aligned_cols=162 Identities=20% Similarity=0.255 Sum_probs=99.0
Q ss_pred HHhhhhcCCCEEEEecCC-------------CCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcCCCCC---
Q 024436 15 FLFINSSTQGVVQYQIEG-------------AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRN--- 78 (268)
Q Consensus 15 ~~~~~~~~~~~~~i~~~~-------------~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~~~~--- 78 (268)
|.||-+|.-.|..+.+.. -..-.|+++|.-++++++...+|-+.-|+-.++.+......+..-.
T Consensus 462 F~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv 541 (910)
T KOG1539|consen 462 FVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIV 541 (910)
T ss_pred eEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceee
Confidence 456666666555555331 1245789999999988888778888777766553222111111000
Q ss_pred e--eEEEe-ecCCcceEEEEeCCCCeEE-EeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCC
Q 024436 79 H--ISVIL-SGDKTGRLMKYDPATKQVT-VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLP 154 (268)
Q Consensus 79 ~--~~~~~-~~~~~g~v~~~d~~~~~~~-~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~ 154 (268)
| ..+++ ..-..-.|..+|..|.++. .+.+....-|.++|||||++|..+. ....|..||+-.+.+ ...+ .++
T Consensus 542 ~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisas-mD~tIr~wDlpt~~l--ID~~-~vd 617 (910)
T KOG1539|consen 542 YHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISAS-MDSTIRTWDLPTGTL--IDGL-LVD 617 (910)
T ss_pred eeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEee-cCCcEEEEeccCcce--eeeE-ecC
Confidence 0 00111 1123346888888776654 3455667889999999999997664 668999999864321 1111 123
Q ss_pred CCCCceEEcCCCCEEEEEecCCCcce
Q 024436 155 GFPDNIKRSPRGGFWVGIHSRRKGIS 180 (268)
Q Consensus 155 g~Pdgia~d~dG~l~va~~~~~~~~~ 180 (268)
.-+-.+.+.|+|.++.+.+.....+.
T Consensus 618 ~~~~sls~SPngD~LAT~Hvd~~gIy 643 (910)
T KOG1539|consen 618 SPCTSLSFSPNGDFLATVHVDQNGIY 643 (910)
T ss_pred CcceeeEECCCCCEEEEEEecCceEE
Confidence 34678899999987777766543333
No 132
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=96.33 E-value=0.68 Score=40.87 Aligned_cols=170 Identities=11% Similarity=0.051 Sum_probs=90.7
Q ss_pred ecCCcceEEEE--eCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCC------CCc-eeEEE-e--
Q 024436 85 SGDKTGRLMKY--DPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSK------AGT-IEIVA-Q-- 152 (268)
Q Consensus 85 ~~~~~g~v~~~--d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~------~g~-~~~~~-~-- 152 (268)
+....|+++.+ +++ |++......+..|-|++.+++ .||++.. ..||+|.-.... .+. -..+. +
T Consensus 23 sTYQagkL~~ig~~~~-g~l~~~~r~F~r~MGl~~~~~--~l~~~t~--~qiw~f~~~~n~l~~~~~~~~~D~~yvPr~~ 97 (335)
T TIGR03032 23 TTYQAGKLFFIGLQPN-GELDVFERTFPRPMGLAVSPQ--SLTLGTR--YQLWRFANVDNLLPAGQTHPGYDRLYVPRAS 97 (335)
T ss_pred EeeecceEEEEEeCCC-CcEEEEeeccCccceeeeeCC--eEEEEEc--ceeEEcccccccccccccCCCCCeEEeeeee
Confidence 44577888877 444 778888888999999999876 5999854 688888322111 011 01111 1
Q ss_pred -CCC--CCCceEEcCCCCEEEEEecCCCcceeeeEeeCccceeeeecccc--------ceeeeeec--cccCCCcEEEE-
Q 024436 153 -LPG--FPDNIKRSPRGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPID--------IVKIHSSL--VKLSGNGGMAM- 218 (268)
Q Consensus 153 -l~g--~Pdgia~d~dG~l~va~~~~~~~~~~~v~~~~~~g~~l~~i~~~--------~~~~~~~~--~~~~~~~~~~~- 218 (268)
..| --+-|++ .++.+|.....-.| +....+.-.+.-....| .+|...-+ ....|.|+..+
T Consensus 98 ~~TGdidiHdia~-~~~~l~fVNT~fSC-----Latl~~~~SF~P~WkPpFIs~la~eDRCHLNGlA~~~g~p~yVTa~~ 171 (335)
T TIGR03032 98 YVTGDIDAHDLAL-GAGRLLFVNTLFSC-----LATVSPDYSFVPLWKPPFISKLAPEDRCHLNGMALDDGEPRYVTALS 171 (335)
T ss_pred eeccCcchhheee-cCCcEEEEECccee-----EEEECCCCccccccCCccccccCccCceeecceeeeCCeEEEEEEee
Confidence 112 2457888 56788887776665 55444444443333332 22222111 11122111111
Q ss_pred --------EECC-CCCEEEEEEcCCCCce----eceEEEEEeCCEEEEeeCCCCeEEEEeCC
Q 024436 219 --------RISE-QGNVLEILEEIGRKMW----RSISEVEEKDGNLWIGSVNMPYAGLYNYS 267 (268)
Q Consensus 219 --------~~~~-~G~~~~~~~~~~g~~~----~~~s~~~~~~g~Lyv~s~~~~~v~~~~~~ 267 (268)
+-+. +|-++-.+ ++++.+ +.+-+--+++|+||+.+.....+.++|.+
T Consensus 172 ~sD~~~gWR~~~~~gG~vidv--~s~evl~~GLsmPhSPRWhdgrLwvldsgtGev~~vD~~ 231 (335)
T TIGR03032 172 QSDVADGWREGRRDGGCVIDI--PSGEVVASGLSMPHSPRWYQGKLWLLNSGRGELGYVDPQ 231 (335)
T ss_pred ccCCcccccccccCCeEEEEe--CCCCEEEcCccCCcCCcEeCCeEEEEECCCCEEEEEcCC
Confidence 0000 11111111 112221 11222346899999999999999999875
No 133
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.30 E-value=0.05 Score=49.90 Aligned_cols=65 Identities=14% Similarity=0.204 Sum_probs=35.2
Q ss_pred CCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCc--eeEEE---------------eCCCCCCceEEcCCCC-EEEE
Q 024436 110 SFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGT--IEIVA---------------QLPGFPDNIKRSPRGG-FWVG 171 (268)
Q Consensus 110 ~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~--~~~~~---------------~l~g~Pdgia~d~dG~-l~va 171 (268)
..+..|.+|.|.++|||+++..+.|..||+.++.... .+++. .+.|.|.=+.+.-||+ ||++
T Consensus 312 ~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT 391 (461)
T PF05694_consen 312 PLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT 391 (461)
T ss_dssp -----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred CceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence 4578999999999999999999999999998643111 11111 1235688899999995 9998
Q ss_pred Eec
Q 024436 172 IHS 174 (268)
Q Consensus 172 ~~~ 174 (268)
..-
T Consensus 392 nSL 394 (461)
T PF05694_consen 392 NSL 394 (461)
T ss_dssp ---
T ss_pred eec
Confidence 754
No 134
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=96.30 E-value=0.028 Score=49.36 Aligned_cols=65 Identities=26% Similarity=0.417 Sum_probs=47.1
Q ss_pred CCcceEEEccCCCEEEEEecCCcEEEEEEccCCC-CCceeEEEeCC---CCCCceEEcC--CCCEEEEEecC
Q 024436 110 SFPNGVALSEDGNYILLAETTSCRILRYWLKTSK-AGTIEIVAQLP---GFPDNIKRSP--RGGFWVGIHSR 175 (268)
Q Consensus 110 ~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~-~g~~~~~~~l~---g~Pdgia~d~--dG~l~va~~~~ 175 (268)
....|++++++| .||+++...+.|.+|+.+++. ..+.+.+.+-+ -.|+++.++. +|.||+....-
T Consensus 186 ~~s~g~~~D~~G-~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~snrl 256 (287)
T PF03022_consen 186 SQSDGMAIDPNG-NLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSNRL 256 (287)
T ss_dssp -SECEEEEETTT-EEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-S-
T ss_pred CCCceEEECCCC-cEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEECcc
Confidence 456799999988 699999999999999998642 12345555422 3799999999 99999987543
No 135
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=96.27 E-value=0.36 Score=42.43 Aligned_cols=71 Identities=23% Similarity=0.344 Sum_probs=47.0
Q ss_pred cceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcCCCCCeeEEEeecCCcceEEEEeCCCCeEEEeec-CCCCcce
Q 024436 36 PESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRNHISVILSGDKTGRLMKYDPATKQVTVLLG-NLSFPNG 114 (268)
Q Consensus 36 P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~-~~~~pnG 114 (268)
.+++.|++-|.++.++..+|+|..++.+... +..... +..--..
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~-----------------------------------iar~lsaH~~pi~s 70 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR-----------------------------------IARMLSAHVRPITS 70 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc-----------------------------------hhhhhhccccceeE
Confidence 6777788888877777777877766654321 111111 1111247
Q ss_pred EEEccCCCEEEEEecCCcEEEEEEccCC
Q 024436 115 VALSEDGNYILLAETTSCRILRYWLKTS 142 (268)
Q Consensus 115 ia~spdg~~lyva~~~~~~I~~~~~~~~ 142 (268)
++||+||+ ..++.+....|..||+..+
T Consensus 71 l~WS~dgr-~LltsS~D~si~lwDl~~g 97 (405)
T KOG1273|consen 71 LCWSRDGR-KLLTSSRDWSIKLWDLLKG 97 (405)
T ss_pred EEecCCCC-EeeeecCCceeEEEeccCC
Confidence 99999997 5567778899999998643
No 136
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=96.25 E-value=0.11 Score=45.58 Aligned_cols=108 Identities=19% Similarity=0.218 Sum_probs=61.1
Q ss_pred CCCCCcceEEECCCCCEEEEEeCCCeEEEEe--CCCCeEEEEEEc----------------CCCCCeeEEEeecCCcceE
Q 024436 31 EGAIGPESLAFDALGEGPYTGVSDGRIIKWH--QDQRRWLHFART----------------SPNRNHISVILSGDKTGRL 92 (268)
Q Consensus 31 ~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~--~~g~~~~~~~~~----------------~~~~~~~~~~~~~~~~g~v 92 (268)
....+..+++|+|||..++++.+. .|..++ ..|..-...... +|-..-..+...-...-.|
T Consensus 156 de~taAhsL~Fs~DGeqlfaGykr-cirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~gi 234 (406)
T KOG2919|consen 156 DEYTAAHSLQFSPDGEQLFAGYKR-CIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGI 234 (406)
T ss_pred HhhhhheeEEecCCCCeEeecccc-eEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeee
Confidence 346789999999999999997642 333333 334321111100 1111101111111112234
Q ss_pred EEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEcc
Q 024436 93 MKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLK 140 (268)
Q Consensus 93 ~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~ 140 (268)
|..+.. +-+..+.+.-..-..+.|.+||+.||+-.+...+|..||+.
T Consensus 235 y~~~~~-~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR 281 (406)
T KOG2919|consen 235 YNDDGR-RPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIR 281 (406)
T ss_pred EecCCC-CceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeeh
Confidence 554443 33344444444455688999999999998888999999986
No 137
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.053 Score=44.89 Aligned_cols=51 Identities=20% Similarity=0.281 Sum_probs=37.7
Q ss_pred CcceEEEEeCCCCeEEEee-------------cCCCCcceEEEccCCCEEEEEecCCcEEEEEE
Q 024436 88 KTGRLMKYDPATKQVTVLL-------------GNLSFPNGVALSEDGNYILLAETTSCRILRYW 138 (268)
Q Consensus 88 ~~g~v~~~d~~~~~~~~~~-------------~~~~~pnGia~spdg~~lyva~~~~~~I~~~~ 138 (268)
.+.+|.|++|++|++.... .....+||||+.|+++++|++.-.-..++-..
T Consensus 194 ~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK~wp~lfEVk 257 (262)
T COG3823 194 QTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGKLWPLLFEVK 257 (262)
T ss_pred eecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecCcCceeEEEE
Confidence 3568999999999987643 22357899999999999999865444444433
No 138
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=96.19 E-value=0.19 Score=42.72 Aligned_cols=110 Identities=15% Similarity=0.132 Sum_probs=72.6
Q ss_pred CEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCC-eEEE--------EEEcCCCCCeeEEEeecCCcceEEE
Q 024436 24 GVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQR-RWLH--------FARTSPNRNHISVILSGDKTGRLMK 94 (268)
Q Consensus 24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~-~~~~--------~~~~~~~~~~~~~~~~~~~~g~v~~ 94 (268)
.++.+..+. .+.++-+++||+++.+. ..+.|.-++++.- .+.. .+...|.. ..+..+.....+|+
T Consensus 177 ~v~sL~~~s--~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k---~~fVaGged~~~~k 250 (334)
T KOG0278|consen 177 EVQSLEFNS--PVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKK---EFFVAGGEDFKVYK 250 (334)
T ss_pred EEEEEecCC--CCcceeeccCCCEEEEe-cCceeEEeccccccceeeccCccccccccccCCC---ceEEecCcceEEEE
Confidence 566666665 78899999999955543 3455655666531 1111 12223433 23446677789999
Q ss_pred EeCCCCeEEEe-ecC-CCCcceEEEccCCCEEEEEecCCcEEEEEEcc
Q 024436 95 YDPATKQVTVL-LGN-LSFPNGVALSEDGNYILLAETTSCRILRYWLK 140 (268)
Q Consensus 95 ~d~~~~~~~~~-~~~-~~~pnGia~spdg~~lyva~~~~~~I~~~~~~ 140 (268)
||-.||+-... ..+ ..--..+.|+|||. +|.+.+..+.|..|...
T Consensus 251 fDy~TgeEi~~~nkgh~gpVhcVrFSPdGE-~yAsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 251 FDYNTGEEIGSYNKGHFGPVHCVRFSPDGE-LYASGSEDGTIRLWQTT 297 (334)
T ss_pred EeccCCceeeecccCCCCceEEEEECCCCc-eeeccCCCceEEEEEec
Confidence 99998865444 233 33346899999995 99999999988888764
No 139
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.14 E-value=1 Score=41.09 Aligned_cols=160 Identities=14% Similarity=0.072 Sum_probs=77.8
Q ss_pred CCcceEEEEeCCCCeEEEeecCCCCcce---------EEEcc--CCCEEEEEecCCcEEEEEEccCCCCCceeEEEe-CC
Q 024436 87 DKTGRLMKYDPATKQVTVLLGNLSFPNG---------VALSE--DGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-LP 154 (268)
Q Consensus 87 ~~~g~v~~~d~~~~~~~~~~~~~~~pnG---------ia~sp--dg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~-l~ 154 (268)
..+|.++.+|+++|+..-.. ....|.+ +..+| .++.+|++.. .+.++.+++..++ ..+.. ..
T Consensus 212 ~~~g~v~a~d~~~G~~~W~~-~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~-~g~l~ald~~tG~----~~W~~~~~ 285 (394)
T PRK11138 212 GDNGRVSAVLMEQGQLIWQQ-RISQPTGATEIDRLVDVDTTPVVVGGVVYALAY-NGNLVALDLRSGQ----IVWKREYG 285 (394)
T ss_pred cCCCEEEEEEccCChhhhee-ccccCCCccchhcccccCCCcEEECCEEEEEEc-CCeEEEEECCCCC----EEEeecCC
Confidence 45678888888877542111 1111111 11112 2346888764 5789999887432 23332 22
Q ss_pred CCCCceEEcCCCCEEEEEecCCCcceeeeEeeCccceeeeeccccce-----eee---eeccccCCCcEEEEEECC-CCC
Q 024436 155 GFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIV-----KIH---SSLVKLSGNGGMAMRISE-QGN 225 (268)
Q Consensus 155 g~Pdgia~d~dG~l~va~~~~~~~~~~~v~~~~~~g~~l~~i~~~~~-----~~~---~~~~~~~~~~~~~~~~~~-~G~ 225 (268)
.+..++++ +|++|++...+.. ......+|+.+.+.+.... +.. .++- .+.. +.++.+|+ +|+
T Consensus 286 -~~~~~~~~-~~~vy~~~~~g~l-----~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v-~~~~-G~l~~ld~~tG~ 356 (394)
T PRK11138 286 -SVNDFAVD-GGRIYLVDQNDRV-----YALDTRGGVELWSQSDLLHRLLTAPVLYNGYLVV-GDSE-GYLHWINREDGR 356 (394)
T ss_pred -CccCcEEE-CCEEEEEcCCCeE-----EEEECCCCcEEEcccccCCCcccCCEEECCEEEE-EeCC-CEEEEEECCCCC
Confidence 23345553 5678887765531 2223456666543322100 000 0010 1122 45566666 477
Q ss_pred EEEEEEcCCCCceeceEEEEEeCCEEEEeeCCCCeEEEEe
Q 024436 226 VLEILEEIGRKMWRSISEVEEKDGNLWIGSVNMPYAGLYN 265 (268)
Q Consensus 226 ~~~~~~~~~g~~~~~~s~~~~~~g~Lyv~s~~~~~v~~~~ 265 (268)
++..+.-..+.. .+.-+..+++||+++..+ .|-.++
T Consensus 357 ~~~~~~~~~~~~---~s~P~~~~~~l~v~t~~G-~l~~~~ 392 (394)
T PRK11138 357 FVAQQKVDSSGF---LSEPVVADDKLLIQARDG-TVYAIT 392 (394)
T ss_pred EEEEEEcCCCcc---eeCCEEECCEEEEEeCCc-eEEEEe
Confidence 766654321111 123344788999997755 333343
No 140
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.10 E-value=0.97 Score=40.41 Aligned_cols=207 Identities=17% Similarity=0.148 Sum_probs=104.6
Q ss_pred EEEEecCC------CCCcceEEECCCCCEEEEEe--CCCeEEEEeCCCCeEEEEEEc--------CCCCCeeEEEeecCC
Q 024436 25 VVQYQIEG------AIGPESLAFDALGEGPYTGV--SDGRIIKWHQDQRRWLHFART--------SPNRNHISVILSGDK 88 (268)
Q Consensus 25 ~~~i~~~~------~~~P~gia~~~dG~~l~~~~--~~g~I~~~~~~g~~~~~~~~~--------~~~~~~~~~~~~~~~ 88 (268)
...|.+|. +..++-++++.||+.+|+-+ ..-.|..+|...+.+..-... .+++.|. .+. .
T Consensus 80 ~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~--~lC--~ 155 (342)
T PF06433_consen 80 TGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFS--MLC--G 155 (342)
T ss_dssp EEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEE--EEE--T
T ss_pred cceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceE--EEe--c
Confidence 44555653 35678889999999998855 357787888776644332211 1122222 223 3
Q ss_pred cceEE--EEeCCCCeEEEeecCCC------CcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeC-------
Q 024436 89 TGRLM--KYDPATKQVTVLLGNLS------FPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL------- 153 (268)
Q Consensus 89 ~g~v~--~~d~~~~~~~~~~~~~~------~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l------- 153 (268)
+|++. .+|.+ |+...-...+- .-+.-+++.++.++|+. +.++.|+..++.+....-...+.-+
T Consensus 156 DGsl~~v~Ld~~-Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~-Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~ 233 (342)
T PF06433_consen 156 DGSLLTVTLDAD-GKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFV-SYEGNVYSADLSGDSAKFGKPWSLLTDAEKAD 233 (342)
T ss_dssp TSCEEEEEETST-SSEEEEEEEESSTTTS-B-S--EEETTTTEEEEE-BTTSEEEEEEETTSSEEEEEEEESS-HHHHHT
T ss_pred CCceEEEEECCC-CCEeEeeccccCCCCcccccccceECCCCeEEEE-ecCCEEEEEeccCCcccccCcccccCcccccc
Confidence 45554 55555 54433221111 11344555555556664 4779999999986532112222111
Q ss_pred ---CCCCCceEEcC-CCCEEEEEecCCC----cceeeeEee-CccceeeeeccccceeeeeeccccCCCcEEEEEECCCC
Q 024436 154 ---PGFPDNIKRSP-RGGFWVGIHSRRK----GISKLVLSF-PWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQG 224 (268)
Q Consensus 154 ---~g~Pdgia~d~-dG~l~va~~~~~~----~~~~~v~~~-~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G 224 (268)
||.=.-+++++ .++|||-.+.+.. .=-..|+.+ ..+++.+++++++. ++.++--....+ ..++.++...
T Consensus 234 ~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~-~~~Si~Vsqd~~-P~L~~~~~~~ 311 (342)
T PF06433_consen 234 GWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEH-PIDSIAVSQDDK-PLLYALSAGD 311 (342)
T ss_dssp TEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEE-EESEEEEESSSS--EEEEEETTT
T ss_pred CcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCC-ccceEEEccCCC-cEEEEEcCCC
Confidence 23334478875 5679997765321 011225555 57888899888752 222111111222 4466666555
Q ss_pred CEEEEEEcCCCCcee
Q 024436 225 NVLEILEEIGRKMWR 239 (268)
Q Consensus 225 ~~~~~~~~~~g~~~~ 239 (268)
.-+.+++...|+.++
T Consensus 312 ~~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 312 GTLDVYDAATGKLVR 326 (342)
T ss_dssp TEEEEEETTT--EEE
T ss_pred CeEEEEeCcCCcEEe
Confidence 566666666666544
No 141
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.08 E-value=0.91 Score=39.88 Aligned_cols=208 Identities=13% Similarity=0.147 Sum_probs=112.0
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCeEEEEEEc----------CCCCCeeEEEeecCCcceEEEEeCCCCeEEE---eecCC
Q 024436 43 ALGEGPYTGVSDGRIIKWHQDQRRWLHFART----------SPNRNHISVILSGDKTGRLMKYDPATKQVTV---LLGNL 109 (268)
Q Consensus 43 ~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~----------~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~---~~~~~ 109 (268)
-+|..++++..|.+|..+|...+.-.+.... .++.. ...++++..+|.|..++.+ .++. +...-
T Consensus 51 Vs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S-~shLlS~sdDG~i~iw~~~--~W~~~~slK~H~ 127 (362)
T KOG0294|consen 51 VSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLS-KSHLLSGSDDGHIIIWRVG--SWELLKSLKAHK 127 (362)
T ss_pred ecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcc-hhheeeecCCCcEEEEEcC--CeEEeeeecccc
Confidence 3477777788889998888754321110000 01110 0123455677888877765 3333 23334
Q ss_pred CCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEecCCCcceeeeEeeC-c
Q 024436 110 SFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFP-W 188 (268)
Q Consensus 110 ~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~~~~~~~~~v~~~~-~ 188 (268)
..-|+|++.|-|+ |-.+-...+.+..|++-.+. ..-...|...+..+.+++.|.-|+-...+. |..|. .
T Consensus 128 ~~Vt~lsiHPS~K-LALsVg~D~~lr~WNLV~Gr---~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~------i~i~q~d 197 (362)
T KOG0294|consen 128 GQVTDLSIHPSGK-LALSVGGDQVLRTWNLVRGR---VAFVLNLKNKATLVSWSPQGDHFVVSGRNK------IDIYQLD 197 (362)
T ss_pred cccceeEecCCCc-eEEEEcCCceeeeehhhcCc---cceeeccCCcceeeEEcCCCCEEEEEeccE------EEEEecc
Confidence 4589999999997 77888888999989885322 222334656788899999998555444443 33342 3
Q ss_pred cceeeeecccccee--eee-----eccccCCCcEEEEEECCC-CCEEEEEEcCCCCceeceEEEEEeCCEEEEeeCCCCe
Q 024436 189 IGNVLIKLPIDIVK--IHS-----SLVKLSGNGGMAMRISEQ-GNVLEILEEIGRKMWRSISEVEEKDGNLWIGSVNMPY 260 (268)
Q Consensus 189 ~g~~l~~i~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~-G~~~~~~~~~~g~~~~~~s~~~~~~g~Lyv~s~~~~~ 260 (268)
+-+++..+..|.+. +++ |+-+.+. .++...|.+ +.+...+.....+ +..+-......+.+.++-..+..
T Consensus 198 ~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~--~~i~~~D~ds~~~~~~~~AH~~R-VK~i~~~~~~~~~~lvTaSSDG~ 274 (362)
T KOG0294|consen 198 NASVFREIENPKRILCATFLDGSELLVGGDN--EWISLKDTDSDTPLTEFLAHENR-VKDIASYTNPEHEYLVTASSDGF 274 (362)
T ss_pred cHhHhhhhhccccceeeeecCCceEEEecCC--ceEEEeccCCCccceeeecchhh-eeeeEEEecCCceEEEEeccCce
Confidence 34455666555221 111 1111222 344555554 5555554443322 34333333333455555444455
Q ss_pred EEEEeC
Q 024436 261 AGLYNY 266 (268)
Q Consensus 261 v~~~~~ 266 (268)
|-+-|.
T Consensus 275 I~vWd~ 280 (362)
T KOG0294|consen 275 IKVWDI 280 (362)
T ss_pred EEEEEc
Confidence 544443
No 142
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=96.08 E-value=0.43 Score=43.30 Aligned_cols=133 Identities=18% Similarity=0.130 Sum_probs=79.2
Q ss_pred CcceEEECCCCCEEEEEeCCCeEEEEeC-CCCeEEEEEEc---------CCCC-CeeEEEeecCCcceEEEEeCCCCeEE
Q 024436 35 GPESLAFDALGEGPYTGVSDGRIIKWHQ-DQRRWLHFART---------SPNR-NHISVILSGDKTGRLMKYDPATKQVT 103 (268)
Q Consensus 35 ~P~gia~~~dG~~l~~~~~~g~I~~~~~-~g~~~~~~~~~---------~~~~-~~~~~~~~~~~~g~v~~~d~~~~~~~ 103 (268)
.-.+..++.|++.++++.-+|.+..|+. +.+....+-.. .|.. ..-......+++-++|.++.+ ..+.
T Consensus 177 Pis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e-~~l~ 255 (459)
T KOG0272|consen 177 PISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE-TPLQ 255 (459)
T ss_pred cceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC-cchh
Confidence 3456678899999999998888887764 44433332211 1221 101111222344456666654 3344
Q ss_pred EeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEe-C-CCCCCceEEcCCCCEEEEEe
Q 024436 104 VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-L-PGFPDNIKRSPRGGFWVGIH 173 (268)
Q Consensus 104 ~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~-l-~g~Pdgia~d~dG~l~va~~ 173 (268)
.+..+...-.-++|.|+|++| .+.+....-..||+..+. +.+.+ . .....++++.+||.|..+..
T Consensus 256 ~l~gH~~RVs~VafHPsG~~L-~TasfD~tWRlWD~~tk~----ElL~QEGHs~~v~~iaf~~DGSL~~tGG 322 (459)
T KOG0272|consen 256 DLEGHLARVSRVAFHPSGKFL-GTASFDSTWRLWDLETKS----ELLLQEGHSKGVFSIAFQPDGSLAATGG 322 (459)
T ss_pred hhhcchhhheeeeecCCCcee-eecccccchhhcccccch----hhHhhcccccccceeEecCCCceeeccC
Confidence 455566667789999999866 576777776668876421 11111 1 11366899999999866543
No 143
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.07 E-value=0.19 Score=46.63 Aligned_cols=96 Identities=21% Similarity=0.199 Sum_probs=60.3
Q ss_pred CCCCeeEEEeecCCcceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCc--EEEEEEccCCCCCceeEEEe
Q 024436 75 PNRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSC--RILRYWLKTSKAGTIEIVAQ 152 (268)
Q Consensus 75 ~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~--~I~~~~~~~~~~g~~~~~~~ 152 (268)
|++..+.-....+..-.||.+|..++....+......--.-.|+|||+.|+++....+ .|+++++++... +.+..
T Consensus 247 pDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~---~riT~ 323 (425)
T COG0823 247 PDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV---TRLTF 323 (425)
T ss_pred CCCCEEEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce---eEeec
Confidence 4444443333444556799999997776665555444446789999999887654333 788888887432 22222
Q ss_pred CCCCCCceEEcCCCCEEEEEe
Q 024436 153 LPGFPDNIKRSPRGGFWVGIH 173 (268)
Q Consensus 153 l~g~Pdgia~d~dG~l~va~~ 173 (268)
-.+....-.+.+||..++-+.
T Consensus 324 ~~~~~~~p~~SpdG~~i~~~~ 344 (425)
T COG0823 324 SGGGNSNPVWSPDGDKIVFES 344 (425)
T ss_pred cCCCCcCccCCCCCCEEEEEe
Confidence 122344667889998766555
No 144
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=96.04 E-value=0.9 Score=39.52 Aligned_cols=143 Identities=14% Similarity=0.198 Sum_probs=90.2
Q ss_pred EEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCC-Ce---------EEEEEEcCCCCCeeEEEeecCCcceEEEEe
Q 024436 27 QYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQ-RR---------WLHFARTSPNRNHISVILSGDKTGRLMKYD 96 (268)
Q Consensus 27 ~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g-~~---------~~~~~~~~~~~~~~~~~~~~~~~g~v~~~d 96 (268)
.+..+.+..-..+.+.+|.+.++++..||++..|+.-. +. |...-..+|.++++.-- .-+..-.||.+.
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcG-GLdN~Csiy~ls 127 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACG-GLDNKCSIYPLS 127 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEec-CcCceeEEEecc
Confidence 34456677889999999999999999999999998632 21 22222334555554321 112334677775
Q ss_pred CC--CCe---EEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcC-CCCEEE
Q 024436 97 PA--TKQ---VTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSP-RGGFWV 170 (268)
Q Consensus 97 ~~--~~~---~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~-dG~l~v 170 (268)
.+ .+. .+.+...-.+-....|-+|++ | ++.++.....-||+..++ ....|..-.|-.-.+.+.| +++.||
T Consensus 128 ~~d~~g~~~v~r~l~gHtgylScC~f~dD~~-i-lT~SGD~TCalWDie~g~--~~~~f~GH~gDV~slsl~p~~~ntFv 203 (343)
T KOG0286|consen 128 TRDAEGNVRVSRELAGHTGYLSCCRFLDDNH-I-LTGSGDMTCALWDIETGQ--QTQVFHGHTGDVMSLSLSPSDGNTFV 203 (343)
T ss_pred cccccccceeeeeecCccceeEEEEEcCCCc-e-EecCCCceEEEEEcccce--EEEEecCCcccEEEEecCCCCCCeEE
Confidence 33 122 233555666777889988874 4 578888999999998532 1233432223344566667 888888
Q ss_pred EEec
Q 024436 171 GIHS 174 (268)
Q Consensus 171 a~~~ 174 (268)
+..-
T Consensus 204 Sg~c 207 (343)
T KOG0286|consen 204 SGGC 207 (343)
T ss_pred eccc
Confidence 6643
No 145
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=96.00 E-value=0.87 Score=39.04 Aligned_cols=186 Identities=17% Similarity=0.232 Sum_probs=102.4
Q ss_pred CcchhHHHHHHHHHHhhhhcCCCEEE------------EecCCC----CCcc--eEEECCCCCEEEEEeCCCeEEEEeCC
Q 024436 2 NSSLSFIAKSIVIFLFINSSTQGVVQ------------YQIEGA----IGPE--SLAFDALGEGPYTGVSDGRIIKWHQD 63 (268)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------i~~~~~----~~P~--gia~~~dG~~l~~~~~~g~I~~~~~~ 63 (268)
++.+|+-+...+..+-.--++..+++ +|+... .-|. =-+-.|+...+.+....+.+...+.+
T Consensus 6 ~~~ls~a~~~~l~~~a~~~~tp~Ve~e~~~lv~a~~et~PVa~~~daADDPAIwVh~t~P~kS~vItt~Kk~Gl~VYDLs 85 (364)
T COG4247 6 SKILSTAAGAALMKLALPTVTPTVETERPDLVDADNETIPVADQNDAADDPAIWVHATNPDKSLVITTVKKAGLRVYDLS 85 (364)
T ss_pred cchhhHHHHHHHHHHhcCCccCcccccCcceeecCCCccccccCCcccCCcceEeccCCcCcceEEEeeccCCeEEEecC
Confidence 35667666666665555555554433 333311 1111 01224555656666666666667777
Q ss_pred CCeEEEEEEcCCCC--------------CeeEEEe-ecC--CcceEEEEeCCCCeEEEeec-------CCCCcceEEEcc
Q 024436 64 QRRWLHFARTSPNR--------------NHISVIL-SGD--KTGRLMKYDPATKQVTVLLG-------NLSFPNGVALSE 119 (268)
Q Consensus 64 g~~~~~~~~~~~~~--------------~~~~~~~-~~~--~~g~v~~~d~~~~~~~~~~~-------~~~~pnGia~sp 119 (268)
|+.+..+. +++ .-+.... +++ ..-.+|.+||+++.++.+.+ ....|.|+++-.
T Consensus 86 GkqLqs~~---~Gk~NNVDLrygF~LgG~~idiaaASdR~~~~i~~y~Idp~~~~L~sitD~n~p~ss~~s~~YGl~lyr 162 (364)
T COG4247 86 GKQLQSVN---PGKYNNVDLRYGFQLGGQSIDIAAASDRQNDKIVFYKIDPNPQYLESITDSNAPYSSSSSSAYGLALYR 162 (364)
T ss_pred CCeeeecC---CCcccccccccCcccCCeEEEEEecccccCCeEEEEEeCCCccceeeccCCCCccccCcccceeeEEEe
Confidence 77533221 111 1111111 222 23357899999877766543 356788998877
Q ss_pred CCC----EEEEEecCCcEEEEEEccCC---CCCceeEEEe--CCCCCCceEEcCC-CCEEEEEecCCCcceeeeEeeC--
Q 024436 120 DGN----YILLAETTSCRILRYWLKTS---KAGTIEIVAQ--LPGFPDNIKRSPR-GGFWVGIHSRRKGISKLVLSFP-- 187 (268)
Q Consensus 120 dg~----~lyva~~~~~~I~~~~~~~~---~~g~~~~~~~--l~g~Pdgia~d~d-G~l~va~~~~~~~~~~~v~~~~-- 187 (268)
+.+ ++||+.. .+.|..|.+-.+ +.+. ..+.+ ++..-.|+..|.+ |.||++...-. |++|.
T Consensus 163 s~ktgd~yvfV~~~-qG~~~Qy~l~d~gnGkv~~-k~vR~fk~~tQTEG~VaDdEtG~LYIaeEdva------iWK~~Ae 234 (364)
T COG4247 163 SPKTGDYYVFVNRR-QGDIAQYKLIDQGNGKVGT-KLVRQFKIPTQTEGMVADDETGFLYIAEEDVA------IWKYEAE 234 (364)
T ss_pred cCCcCcEEEEEecC-CCceeEEEEEecCCceEcc-eeeEeeecCCcccceeeccccceEEEeeccce------eeecccC
Confidence 644 4566654 488888887532 2221 12222 4556788888764 78999987654 44542
Q ss_pred ----ccceeeeeccc
Q 024436 188 ----WIGNVLIKLPI 198 (268)
Q Consensus 188 ----~~g~~l~~i~~ 198 (268)
..|+++.++..
T Consensus 235 p~~G~~g~~idr~~d 249 (364)
T COG4247 235 PNRGNTGRLIDRIKD 249 (364)
T ss_pred CCCCCccchhhhhcC
Confidence 34566666653
No 146
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=95.97 E-value=0.065 Score=49.58 Aligned_cols=58 Identities=24% Similarity=0.379 Sum_probs=44.7
Q ss_pred ceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCc---eEEcCCC-CEEEEEecCC
Q 024436 113 NGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDN---IKRSPRG-GFWVGIHSRR 176 (268)
Q Consensus 113 nGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdg---ia~d~dG-~l~va~~~~~ 176 (268)
.-++++||.+ |-++-...+.|.+||+.+ ...+.++.|.+|| |.+..|| +||.+...+.
T Consensus 513 yALa~spDak-vcFsccsdGnI~vwDLhn-----q~~VrqfqGhtDGascIdis~dGtklWTGGlDnt 574 (705)
T KOG0639|consen 513 YALAISPDAK-VCFSCCSDGNIAVWDLHN-----QTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNT 574 (705)
T ss_pred hhhhcCCccc-eeeeeccCCcEEEEEccc-----ceeeecccCCCCCceeEEecCCCceeecCCCccc
Confidence 4689999998 556777889999999975 3455668888988 4566789 6999877664
No 147
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=95.96 E-value=0.13 Score=49.85 Aligned_cols=90 Identities=17% Similarity=0.161 Sum_probs=66.4
Q ss_pred ecCCcceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcC
Q 024436 85 SGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSP 164 (268)
Q Consensus 85 ~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~ 164 (268)
..+++-+||++..+ +.-.+..+..|-..|+|.|-.+.-|++.+..++|..|.+.+.+ ...+.++..+-..+++.|
T Consensus 387 SMDKTVRLWh~~~~--~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~---Vv~W~Dl~~lITAvcy~P 461 (712)
T KOG0283|consen 387 SMDKTVRLWHPGRK--ECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK---VVDWNDLRDLITAVCYSP 461 (712)
T ss_pred cccccEEeecCCCc--ceeeEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCe---eEeehhhhhhheeEEecc
Confidence 34566677776543 4444556777888999999888899999999999999987522 233445666788999999
Q ss_pred CCC-EEEEEecCCCcc
Q 024436 165 RGG-FWVGIHSRRKGI 179 (268)
Q Consensus 165 dG~-l~va~~~~~~~~ 179 (268)
||+ ..|+.+.+.|++
T Consensus 462 dGk~avIGt~~G~C~f 477 (712)
T KOG0283|consen 462 DGKGAVIGTFNGYCRF 477 (712)
T ss_pred CCceEEEEEeccEEEE
Confidence 997 577888777643
No 148
>PTZ00421 coronin; Provisional
Probab=95.94 E-value=0.26 Score=46.66 Aligned_cols=109 Identities=14% Similarity=0.058 Sum_probs=66.5
Q ss_pred CCcceEEECCCCCEEEEEeCCCeEEEEeCC-CCeEEEEEEcCC----------CCCeeEEE-eecCCcceEEEEeCCCCe
Q 024436 34 IGPESLAFDALGEGPYTGVSDGRIIKWHQD-QRRWLHFARTSP----------NRNHISVI-LSGDKTGRLMKYDPATKQ 101 (268)
Q Consensus 34 ~~P~gia~~~dG~~l~~~~~~g~I~~~~~~-g~~~~~~~~~~~----------~~~~~~~~-~~~~~~g~v~~~d~~~~~ 101 (268)
..-.+++++|+|++++++..|+.|..|++. ++....+..... +...+... +.....+.|..||..+..
T Consensus 169 ~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 169 DQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA 248 (493)
T ss_pred CceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence 357889999999999999999999999975 333222221111 11111111 112235678888876432
Q ss_pred E-EEee--cCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCC
Q 024436 102 V-TVLL--GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS 142 (268)
Q Consensus 102 ~-~~~~--~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~ 142 (268)
. .... +......-..+++|++.||++....+.|..|++..+
T Consensus 249 ~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 249 SPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred CceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 1 1111 111122234689999988888767889999999753
No 149
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=95.92 E-value=1.2 Score=40.14 Aligned_cols=93 Identities=13% Similarity=0.183 Sum_probs=49.7
Q ss_pred CCEEEEEeCCCeEEEEeC-CCCe-EEEEEEcCC--CCCee--EEEeecCCcceEEEEeCCCCeEEEeecCCCCcc-eEEE
Q 024436 45 GEGPYTGVSDGRIIKWHQ-DQRR-WLHFARTSP--NRNHI--SVILSGDKTGRLMKYDPATKQVTVLLGNLSFPN-GVAL 117 (268)
Q Consensus 45 G~~l~~~~~~g~I~~~~~-~g~~-~~~~~~~~~--~~~~~--~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pn-Gia~ 117 (268)
++.+|+...+|.++.+++ +|+. |.. ..... ..+.. ..++....++.++.+|.++|++.--........ ..++
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~-~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v 143 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRV-DLDERLSGGVGADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLV 143 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeee-cCCCCcccceEEcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEE
Confidence 556888888899999995 6663 321 11000 00000 011223456899999998887532111101111 1122
Q ss_pred ccCCCEEEEEecCCcEEEEEEccC
Q 024436 118 SEDGNYILLAETTSCRILRYWLKT 141 (268)
Q Consensus 118 spdg~~lyva~~~~~~I~~~~~~~ 141 (268)
. + +.+|+.. ..++|+.++.+.
T Consensus 144 ~-~-~~v~v~~-~~g~l~a~d~~t 164 (377)
T TIGR03300 144 A-N-GLVVVRT-NDGRLTALDAAT 164 (377)
T ss_pred E-C-CEEEEEC-CCCeEEEEEcCC
Confidence 2 3 3677754 567899999864
No 150
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=95.90 E-value=0.75 Score=42.81 Aligned_cols=146 Identities=17% Similarity=0.195 Sum_probs=89.5
Q ss_pred CCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcCC----CCCeeEEEeecCCcceEEEEeCCCCeEEEeecC
Q 024436 33 AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSP----NRNHISVILSGDKTGRLMKYDPATKQVTVLLGN 108 (268)
Q Consensus 33 ~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~ 108 (268)
...-.|+|..|+.+++.+...++.+..|+...-.|+.....+. -.+.. .+..+..+|+.+++|.++.....+...
T Consensus 368 ~delwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d 446 (626)
T KOG2106|consen 368 GDELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD 446 (626)
T ss_pred ccceeeEEcCCChhheeeccCcceEEEccCCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec
Confidence 3478999999999989888888888888833223433221110 00111 223445789999999987554444444
Q ss_pred CCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCC-CCceEEcCCCCEEEEEecCCCcceee
Q 024436 109 LSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGF-PDNIKRSPRGGFWVGIHSRRKGISKL 182 (268)
Q Consensus 109 ~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~-Pdgia~d~dG~l~va~~~~~~~~~~~ 182 (268)
-..-+-+.++|||.+|-|. +.++.|+.|.++.... ....+....|. -.-+.+.+|++++++....- .++-|
T Consensus 447 ~~~ls~v~ysp~G~~lAvg-s~d~~iyiy~Vs~~g~-~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~-eiLyW 518 (626)
T KOG2106|consen 447 NEQLSVVRYSPDGAFLAVG-SHDNHIYIYRVSANGR-KYSRVGKCSGSPITHLDWSSDSQFLVSNSGDY-EILYW 518 (626)
T ss_pred CCceEEEEEcCCCCEEEEe-cCCCeEEEEEECCCCc-EEEEeeeecCceeEEeeecCCCceEEeccCce-EEEEE
Confidence 4445789999999866554 6778999998873210 01111112222 24567778888877766543 34444
No 151
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=95.89 E-value=0.29 Score=43.20 Aligned_cols=127 Identities=19% Similarity=0.184 Sum_probs=71.5
Q ss_pred CcceEEEEeCCCCeEEE-eecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCC-CCCCceEEcCC
Q 024436 88 KTGRLMKYDPATKQVTV-LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLP-GFPDNIKRSPR 165 (268)
Q Consensus 88 ~~g~v~~~d~~~~~~~~-~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~-g~Pdgia~d~d 165 (268)
+.+.|..++..-.+..- +.++...-..+.+||||++|..+....-||.+|.+.+.+ .....-| ....|+++.+|
T Consensus 69 k~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~----~~~~~~pK~~~kg~~f~~d 144 (447)
T KOG4497|consen 69 KDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK----GYLLPHPKTNVKGYAFHPD 144 (447)
T ss_pred ccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccce----eEEecccccCceeEEECCC
Confidence 44556555543223322 223333335689999999999998899999999987521 1222211 23479999999
Q ss_pred CCEEEEEecCCCcceeeeEeeC-ccceeeeeccccceeeeeeccccCCCcEEEEEECCCCCEEEEEEc
Q 024436 166 GGFWVGIHSRRKGISKLVLSFP-WIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEE 232 (268)
Q Consensus 166 G~l~va~~~~~~~~~~~v~~~~-~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~ 232 (268)
|++..-.....+ .+|++.+. ..-.+++...++... -..+.-+|||..+.+++.
T Consensus 145 g~f~ai~sRrDC--kdyv~i~~c~~W~ll~~f~~dT~D------------ltgieWsPdg~~laVwd~ 198 (447)
T KOG4497|consen 145 GQFCAILSRRDC--KDYVQISSCKAWILLKEFKLDTID------------LTGIEWSPDGNWLAVWDN 198 (447)
T ss_pred CceeeeeecccH--HHHHHHHhhHHHHHHHhcCCCccc------------ccCceECCCCcEEEEecc
Confidence 987554444333 34444431 233344444443211 123555566666666554
No 152
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=95.87 E-value=1 Score=38.67 Aligned_cols=141 Identities=15% Similarity=0.138 Sum_probs=80.5
Q ss_pred CCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCe-EEEEEEcCCC---------CCeeEEEeecCCcceEEEEeCCCCeE
Q 024436 33 AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRR-WLHFARTSPN---------RNHISVILSGDKTGRLMKYDPATKQV 102 (268)
Q Consensus 33 ~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~-~~~~~~~~~~---------~~~~~~~~~~~~~g~v~~~d~~~~~~ 102 (268)
.+.-..+++..+|..+.++.-+..+..++.++.. .......+-. +..-..+......-.|.++|-..++.
T Consensus 20 ~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~ 99 (313)
T KOG1407|consen 20 VQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKC 99 (313)
T ss_pred hhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcE
Confidence 3567889999999999988877777666544321 1111100000 00000111222333555566555555
Q ss_pred EEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEecCCC
Q 024436 103 TVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRK 177 (268)
Q Consensus 103 ~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~~~~ 177 (268)
......-..-+-|.++|||+++.+.+ ..++|.-++....+.-..+. .+-....+++.-+++++....+.++
T Consensus 100 ~~~i~~~~eni~i~wsp~g~~~~~~~-kdD~it~id~r~~~~~~~~~---~~~e~ne~~w~~~nd~Fflt~GlG~ 170 (313)
T KOG1407|consen 100 TARIETKGENINITWSPDGEYIAVGN-KDDRITFIDARTYKIVNEEQ---FKFEVNEISWNNSNDLFFLTNGLGC 170 (313)
T ss_pred EEEeeccCcceEEEEcCCCCEEEEec-CcccEEEEEecccceeehhc---ccceeeeeeecCCCCEEEEecCCce
Confidence 44443333445799999999887766 45678777765322111111 2234567888877889888888665
No 153
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=95.80 E-value=0.64 Score=40.93 Aligned_cols=31 Identities=16% Similarity=0.305 Sum_probs=27.1
Q ss_pred CCcceEEEccCCCEEEEEecCCcEEEEEEcc
Q 024436 110 SFPNGVALSEDGNYILLAETTSCRILRYWLK 140 (268)
Q Consensus 110 ~~pnGia~spdg~~lyva~~~~~~I~~~~~~ 140 (268)
..|.-++|+||-+.+.|+--..+++++|.+.
T Consensus 133 dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~ 163 (420)
T KOG2096|consen 133 DHPTRVVFAPDCKSVVVSVKRGNKLCVYKLV 163 (420)
T ss_pred CCceEEEECCCcceEEEEEccCCEEEEEEee
Confidence 3688999999999898888788899999876
No 154
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=95.77 E-value=0.2 Score=46.28 Aligned_cols=96 Identities=15% Similarity=0.123 Sum_probs=61.5
Q ss_pred CCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEE----------EcCCCCCeeEEEe-ecCCcceEEEEeCCCCe
Q 024436 33 AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFA----------RTSPNRNHISVIL-SGDKTGRLMKYDPATKQ 101 (268)
Q Consensus 33 ~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~----------~~~~~~~~~~~~~-~~~~~g~v~~~d~~~~~ 101 (268)
+..-+.+.+++||+.++++++...++.++-+........ ..+++..|+.=.+ ++--+..|..+|.++++
T Consensus 401 lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~K 480 (668)
T COG4946 401 LGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGK 480 (668)
T ss_pred ccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCe
Confidence 567889999999998888888899998886532211110 1234444432111 12223456667777677
Q ss_pred EEEeecCCCCcceEEEccCCCEEEEEe
Q 024436 102 VTVLLGNLSFPNGVALSEDGNYILLAE 128 (268)
Q Consensus 102 ~~~~~~~~~~pnGia~spdg~~lyva~ 128 (268)
+-.+...-.+-..-||+|||++||+-.
T Consensus 481 iy~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 481 IYDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred EEEecCCcccccCcccCCCCcEEEEEe
Confidence 766655555555679999999999853
No 155
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=95.64 E-value=0.057 Score=32.78 Aligned_cols=39 Identities=21% Similarity=0.057 Sum_probs=30.3
Q ss_pred EEEEEecCCc-EEEEEEccCCCCCceeEEEe-CCCCCCceEEcC
Q 024436 123 YILLAETTSC-RILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSP 164 (268)
Q Consensus 123 ~lyva~~~~~-~I~~~~~~~~~~g~~~~~~~-l~g~Pdgia~d~ 164 (268)
.||.+|...+ +|.+-+++|.. .+++.. .-..|.||++|+
T Consensus 2 ~iYWtD~~~~~~I~~a~~dGs~---~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 2 KIYWTDWSQDPSIERANLDGSN---RRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp EEEEEETTTTEEEEEEETTSTS---EEEEEESSTSSEEEEEEET
T ss_pred EEEEEECCCCcEEEEEECCCCC---eEEEEECCCCCcCEEEECC
Confidence 6999999999 99999999843 455443 224799999985
No 156
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=95.61 E-value=0.48 Score=42.89 Aligned_cols=173 Identities=19% Similarity=0.232 Sum_probs=98.3
Q ss_pred CcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEE----------EEEEcCCCCCeeEEEeecCCcceEEEEeCCCCeEEE
Q 024436 35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWL----------HFARTSPNRNHISVILSGDKTGRLMKYDPATKQVTV 104 (268)
Q Consensus 35 ~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~----------~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~ 104 (268)
.-..+...|+|+.++++...|....|+..+-.++ .....+.++.|+ ++++..|.|-.+++.=..++.
T Consensus 98 ~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wm---iSgD~gG~iKyWqpnmnnVk~ 174 (464)
T KOG0284|consen 98 PVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWM---ISGDKGGMIKYWQPNMNNVKI 174 (464)
T ss_pred ceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEE---EEcCCCceEEecccchhhhHH
Confidence 3456788999999999998899888765321000 001112222232 366777888888886322332
Q ss_pred eecC-CCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCC-CCCceEEcCCCCEEEEEecCCCcceee
Q 024436 105 LLGN-LSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPG-FPDNIKRSPRGGFWVGIHSRRKGISKL 182 (268)
Q Consensus 105 ~~~~-~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g-~Pdgia~d~dG~l~va~~~~~~~~~~~ 182 (268)
.... -..-.+++|+|.. .-|++-+..++|..|+..-. ..+.....+| .+..+.+.|.-.|.++..... ++++
T Consensus 175 ~~ahh~eaIRdlafSpnD-skF~t~SdDg~ikiWdf~~~---kee~vL~GHgwdVksvdWHP~kgLiasgskDn--lVKl 248 (464)
T KOG0284|consen 175 IQAHHAEAIRDLAFSPND-SKFLTCSDDGTIKIWDFRMP---KEERVLRGHGWDVKSVDWHPTKGLIASGSKDN--LVKL 248 (464)
T ss_pred hhHhhhhhhheeccCCCC-ceeEEecCCCeEEEEeccCC---chhheeccCCCCcceeccCCccceeEEccCCc--eeEe
Confidence 2221 1345689999965 58899999999999987532 1222223233 477888888766555443332 1211
Q ss_pred eEeeCccceeeeeccccceeeeeeccccCCCcEEEEEECCCCCEEEEE
Q 024436 183 VLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEIL 230 (268)
Q Consensus 183 v~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 230 (268)
-.+++|+-++.+.. .+.. .+.++++++|..+.+.
T Consensus 249 --WDprSg~cl~tlh~-----------HKnt-Vl~~~f~~n~N~Llt~ 282 (464)
T KOG0284|consen 249 --WDPRSGSCLATLHG-----------HKNT-VLAVKFNPNGNWLLTG 282 (464)
T ss_pred --ecCCCcchhhhhhh-----------ccce-EEEEEEcCCCCeeEEc
Confidence 13455554444322 2232 4556666666554444
No 157
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=95.59 E-value=0.26 Score=44.62 Aligned_cols=114 Identities=19% Similarity=0.213 Sum_probs=70.6
Q ss_pred CEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCe---EEEEE-------EcCCCCCeeEEEeecCCcceEE
Q 024436 24 GVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRR---WLHFA-------RTSPNRNHISVILSGDKTGRLM 93 (268)
Q Consensus 24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~---~~~~~-------~~~~~~~~~~~~~~~~~~g~v~ 93 (268)
..+.++-+....+.+-+.-|||..++++..|+.|..++.||+. |.... ..++++.++..+.. ++ .+.
T Consensus 303 ~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~-d~--~i~ 379 (519)
T KOG0293|consen 303 LRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTV-DK--KIR 379 (519)
T ss_pred hhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEec-cc--cee
Confidence 3444444423568888999999999999999999999999873 33221 12344455544432 22 333
Q ss_pred EEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccC
Q 024436 94 KYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT 141 (268)
Q Consensus 94 ~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~ 141 (268)
.++..+..-+-+...-..-..+.+|.||+ +...+-..+.|.-||+..
T Consensus 380 l~~~e~~~dr~lise~~~its~~iS~d~k-~~LvnL~~qei~LWDl~e 426 (519)
T KOG0293|consen 380 LYNREARVDRGLISEEQPITSFSISKDGK-LALVNLQDQEIHLWDLEE 426 (519)
T ss_pred eechhhhhhhccccccCceeEEEEcCCCc-EEEEEcccCeeEEeecch
Confidence 33333211111333333345789999998 555667789999999974
No 158
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=95.52 E-value=0.44 Score=47.11 Aligned_cols=138 Identities=14% Similarity=0.137 Sum_probs=83.1
Q ss_pred cceEEECCCCCEEEEEeCCCeEEEEeCCCC-eEEEEE---------EcCCCCCeeEEEeecCCcceEEEEeCCCCeEEEe
Q 024436 36 PESLAFDALGEGPYTGVSDGRIIKWHQDQR-RWLHFA---------RTSPNRNHISVILSGDKTGRLMKYDPATKQVTVL 105 (268)
Q Consensus 36 P~gia~~~dG~~l~~~~~~g~I~~~~~~g~-~~~~~~---------~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~ 105 (268)
.+.++++.+|++++.+..|-.|-.++.+.. ....+. ...|.++++... ..+|.|+.||.+++.+...
T Consensus 99 ~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvs---s~dG~v~iw~~~~~~~~~t 175 (933)
T KOG1274|consen 99 IRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVS---SCDGKVQIWDLQDGILSKT 175 (933)
T ss_pred ceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEE---ecCceEEEEEcccchhhhh
Confidence 467899999998888877777766654321 111111 112444554432 5788999999887765443
Q ss_pred ecCCC---------CcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEe--CCCCCCceEEcCCCCEEEEEec
Q 024436 106 LGNLS---------FPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ--LPGFPDNIKRSPRGGFWVGIHS 174 (268)
Q Consensus 106 ~~~~~---------~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~--l~g~Pdgia~d~dG~l~va~~~ 174 (268)
..++. .-+-++|+|+|..+.+. ...+.|.+|+.++.... -.+.. ....-.-++++|.|.++.|..-
T Consensus 176 l~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~-~~d~~Vkvy~r~~we~~--f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~ 252 (933)
T KOG1274|consen 176 LTGVDKDNEFILSRICTRLAWHPKGGTLAVP-PVDNTVKVYSRKGWELQ--FKLRDKLSSSKFSDLQWSPNGKYIAASTL 252 (933)
T ss_pred cccCCccccccccceeeeeeecCCCCeEEee-ccCCeEEEEccCCceeh--eeecccccccceEEEEEcCCCcEEeeecc
Confidence 33322 22458999997666655 46689999999874210 01111 1122446788898877766666
Q ss_pred CCCcce
Q 024436 175 RRKGIS 180 (268)
Q Consensus 175 ~~~~~~ 180 (268)
.+ .++
T Consensus 253 ~g-~I~ 257 (933)
T KOG1274|consen 253 DG-QIL 257 (933)
T ss_pred CC-cEE
Confidence 55 444
No 159
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=95.43 E-value=0.64 Score=45.21 Aligned_cols=143 Identities=15% Similarity=0.169 Sum_probs=88.3
Q ss_pred EEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEE--E--------EEcCCCCCeeEEEeecCCcceEEE
Q 024436 25 VVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLH--F--------ARTSPNRNHISVILSGDKTGRLMK 94 (268)
Q Consensus 25 ~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~--~--------~~~~~~~~~~~~~~~~~~~g~v~~ 94 (268)
-+++.++. ..-++.++|||+++.++.-|..|..+-.|.-.+.. + ...+++.... .....+++-.||-
T Consensus 502 ~rtLel~d--dvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSkli-vTgSADKnVKiWG 578 (888)
T KOG0306|consen 502 TRTLELED--DVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLI-VTGSADKNVKIWG 578 (888)
T ss_pred ceEEeccc--cEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeE-EeccCCCceEEec
Confidence 35666665 67889999999999999999888877766432111 1 1223332211 1223344455555
Q ss_pred EeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCC---CCCceEEcCCCCEEEE
Q 024436 95 YDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPG---FPDNIKRSPRGGFWVG 171 (268)
Q Consensus 95 ~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g---~Pdgia~d~dG~l~va 171 (268)
+|-. .-.+.+..+...-..+.|-|+. ++|++..-.+.|..||-+ + .+.+..++| -...+++.|+|.+.|+
T Consensus 579 LdFG-DCHKS~fAHdDSvm~V~F~P~~-~~FFt~gKD~kvKqWDg~--k---Fe~iq~L~~H~~ev~cLav~~~G~~vvs 651 (888)
T KOG0306|consen 579 LDFG-DCHKSFFAHDDSVMSVQFLPKT-HLFFTCGKDGKVKQWDGE--K---FEEIQKLDGHHSEVWCLAVSPNGSFVVS 651 (888)
T ss_pred cccc-hhhhhhhcccCceeEEEEcccc-eeEEEecCcceEEeechh--h---hhhheeeccchheeeeeEEcCCCCeEEe
Confidence 5543 1122233333334579999976 688898888999998743 2 222333332 3678899999998887
Q ss_pred EecCCC
Q 024436 172 IHSRRK 177 (268)
Q Consensus 172 ~~~~~~ 177 (268)
....++
T Consensus 652 ~shD~s 657 (888)
T KOG0306|consen 652 SSHDKS 657 (888)
T ss_pred ccCCce
Confidence 766554
No 160
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=95.41 E-value=1.4 Score=38.86 Aligned_cols=106 Identities=9% Similarity=0.040 Sum_probs=60.7
Q ss_pred CCCcceEEECCCCCEEEEEeCCCeEEEEeCC---------CCeE----EEEEEcCCCCCeeE--------------EEee
Q 024436 33 AIGPESLAFDALGEGPYTGVSDGRIIKWHQD---------QRRW----LHFARTSPNRNHIS--------------VILS 85 (268)
Q Consensus 33 ~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~---------g~~~----~~~~~~~~~~~~~~--------------~~~~ 85 (268)
.+.-.|.-.+|||.-+.+...+..+..|+.. +... ..+-...+.--|.. .+..
T Consensus 49 ~nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ 128 (406)
T KOG2919|consen 49 LNFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAV 128 (406)
T ss_pred hhhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeee
Confidence 3455677889999988887777776666421 1100 00000011100000 0111
Q ss_pred cCCcceEEEEeCCCCeEEEe------ecCCCCcceEEEccCCCEEEEEecCCcEEEEEEcc
Q 024436 86 GDKTGRLMKYDPATKQVTVL------LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLK 140 (268)
Q Consensus 86 ~~~~g~v~~~d~~~~~~~~~------~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~ 140 (268)
.....-|..+|.-+|+.+.- .+....+..++|+|||..||.- .+++|.+|++.
T Consensus 129 ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG--ykrcirvFdt~ 187 (406)
T KOG2919|consen 129 SSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG--YKRCIRVFDTS 187 (406)
T ss_pred ccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec--ccceEEEeecc
Confidence 12334466677766766543 2445667899999999988854 56899999985
No 161
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=95.35 E-value=0.46 Score=42.88 Aligned_cols=120 Identities=16% Similarity=0.184 Sum_probs=69.3
Q ss_pred CCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcCCCCCeeEEEeecCCcceEEEEeCCCCeEEEeecCCCCcc
Q 024436 34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPN 113 (268)
Q Consensus 34 ~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pn 113 (268)
+.-+++.|+|+|+++.++.++|.|+.|-....... . .+. +...+...|.+ .+.+.....-+.
T Consensus 66 ~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~-~----------~d~-e~~~~ke~w~v------~k~lr~h~~diy 127 (434)
T KOG1009|consen 66 RAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIF-D----------ADT-EADLNKEKWVV------KKVLRGHRDDIY 127 (434)
T ss_pred ceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCc-c----------ccc-hhhhCccceEE------EEEecccccchh
Confidence 45677788888887777777777776654321110 0 000 00000111110 111223445678
Q ss_pred eEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEE-eCCCCCCceEEcCCCCEEEEEecC
Q 024436 114 GVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVA-QLPGFPDNIKRSPRGGFWVGIHSR 175 (268)
Q Consensus 114 Gia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~-~l~g~Pdgia~d~dG~l~va~~~~ 175 (268)
.++|+||+. ..++.+..+.++-||+..+. ..... +-..++.|+++||.+.........
T Consensus 128 dL~Ws~d~~-~l~s~s~dns~~l~Dv~~G~---l~~~~~dh~~yvqgvawDpl~qyv~s~s~d 186 (434)
T KOG1009|consen 128 DLAWSPDSN-FLVSGSVDNSVRLWDVHAGQ---LLAILDDHEHYVQGVAWDPLNQYVASKSSD 186 (434)
T ss_pred hhhccCCCc-eeeeeeccceEEEEEeccce---eEeeccccccccceeecchhhhhhhhhccC
Confidence 999999996 55777888999999987432 22221 224689999999987655554443
No 162
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=95.34 E-value=0.29 Score=43.67 Aligned_cols=83 Identities=17% Similarity=0.198 Sum_probs=53.0
Q ss_pred CEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEe--CCCCeEEEEEEcCCCCCeeEEEeecCCcceEEEEeCCCCe
Q 024436 24 GVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWH--QDQRRWLHFARTSPNRNHISVILSGDKTGRLMKYDPATKQ 101 (268)
Q Consensus 24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~ 101 (268)
.+-+|.... ..-..+||+++|.++.++.+.|+|.|+- ++|.. ++.+...+.
T Consensus 165 ~v~~I~aH~-~~lAalafs~~G~llATASeKGTVIRVf~v~~G~k-------------------------l~eFRRG~~- 217 (391)
T KOG2110|consen 165 PVNTINAHK-GPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQK-------------------------LYEFRRGTY- 217 (391)
T ss_pred eeeEEEecC-CceeEEEECCCCCEEEEeccCceEEEEEEcCCccE-------------------------eeeeeCCce-
Confidence 444555443 2456788899999888888888887763 34433 222322111
Q ss_pred EEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccC
Q 024436 102 VTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT 141 (268)
Q Consensus 102 ~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~ 141 (268)
. ..-..|+|+||+++| .+.+.+..|+.|.++.
T Consensus 218 ~-------~~IySL~Fs~ds~~L-~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 218 P-------VSIYSLSFSPDSQFL-AASSNTETVHIFKLEK 249 (391)
T ss_pred e-------eEEEEEEECCCCCeE-EEecCCCeEEEEEecc
Confidence 1 112369999999855 5567889999999874
No 163
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=95.29 E-value=0.33 Score=45.88 Aligned_cols=68 Identities=18% Similarity=0.231 Sum_probs=42.7
Q ss_pred CCCCcceEEEccCCCEEEEE-ecCCc-------EEEEEEccCCCCCceeEEEeCCC--CCCceEEcCCCC-EEEEEecCC
Q 024436 108 NLSFPNGVALSEDGNYILLA-ETTSC-------RILRYWLKTSKAGTIEIVAQLPG--FPDNIKRSPRGG-FWVGIHSRR 176 (268)
Q Consensus 108 ~~~~pnGia~spdg~~lyva-~~~~~-------~I~~~~~~~~~~g~~~~~~~l~g--~Pdgia~d~dG~-l~va~~~~~ 176 (268)
-+..|-+|+|+|.|+ |+++ |.... -++.+...++..++...|...|. --.|.++.|||+ ++|+....+
T Consensus 498 ~f~~PDnl~fD~~Gr-LWi~TDg~~s~~~~~~~G~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~FspD~~TlFV~vQHPG 576 (616)
T COG3211 498 WFNSPDNLAFDPWGR-LWIQTDGSGSTLRNRFRGVTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSPDGKTLFVNVQHPG 576 (616)
T ss_pred cccCCCceEECCCCC-EEEEecCCCCccCcccccccccccCCCccceeeeeccCCCcceeecceeCCCCceEEEEecCCC
Confidence 366799999999997 6665 44332 12222223344555666654332 356899999995 888876554
No 164
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=95.28 E-value=0.35 Score=43.17 Aligned_cols=83 Identities=22% Similarity=0.531 Sum_probs=51.6
Q ss_pred ceEEEcc-CCCEEEEEecCC----cEEEEEEccC--CCCCceeEEE--eC---CC--------CCCceEEcCCCCEEEEE
Q 024436 113 NGVALSE-DGNYILLAETTS----CRILRYWLKT--SKAGTIEIVA--QL---PG--------FPDNIKRSPRGGFWVGI 172 (268)
Q Consensus 113 nGia~sp-dg~~lyva~~~~----~~I~~~~~~~--~~~g~~~~~~--~l---~g--------~Pdgia~d~dG~l~va~ 172 (268)
.||+++| +++++-|+|... .+++.++++. +..+...... .+ .| -+.||++.++|.+|++.
T Consensus 23 Sgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~is~ 102 (326)
T PF13449_consen 23 SGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFWISS 102 (326)
T ss_pred eeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEEEEe
Confidence 5899985 444444455433 2377777653 1112122111 11 12 24599998899999999
Q ss_pred ecC------CCcceeeeEeeCccceeeeeccccc
Q 024436 173 HSR------RKGISKLVLSFPWIGNVLIKLPIDI 200 (268)
Q Consensus 173 ~~~------~~~~~~~v~~~~~~g~~l~~i~~~~ 200 (268)
... .. |.++...|+++.+++.|.
T Consensus 103 E~~~~~~~~p~-----I~~~~~~G~~~~~~~vP~ 131 (326)
T PF13449_consen 103 EGGRTGGIPPR-----IRRFDLDGRVIRRFPVPA 131 (326)
T ss_pred CCccCCCCCCE-----EEEECCCCcccceEcccc
Confidence 877 53 888888899988886663
No 165
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=95.17 E-value=1.3 Score=43.69 Aligned_cols=177 Identities=16% Similarity=0.165 Sum_probs=107.2
Q ss_pred CCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeE-EEEE----EcCCCCC----ee-EEEeecCCcceEEEEeCCCCeEE
Q 024436 34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRW-LHFA----RTSPNRN----HI-SVILSGDKTGRLMKYDPATKQVT 103 (268)
Q Consensus 34 ~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~-~~~~----~~~~~~~----~~-~~~~~~~~~g~v~~~d~~~~~~~ 103 (268)
....++++++=|++.+.+...|.|-+++...... ..|. ..++-.. .. ..+.+....|-+..+|-+++...
T Consensus 449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~ 528 (910)
T KOG1539|consen 449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLK 528 (910)
T ss_pred cceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCccee
Confidence 4577889999999999999999999998754321 1221 0000000 00 12334455677777887744433
Q ss_pred EeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEE-EEecCCCcceee
Q 024436 104 VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWV-GIHSRRKGISKL 182 (268)
Q Consensus 104 ~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~v-a~~~~~~~~~~~ 182 (268)
.-..-...+++|.....-. +++.....-.|..+|....+. .+.|..-...-..+++.+||+..+ |+....
T Consensus 529 ~~l~l~~~~~~iv~hr~s~-l~a~~~ddf~I~vvD~~t~kv--vR~f~gh~nritd~~FS~DgrWlisasmD~t------ 599 (910)
T KOG1539|consen 529 KSLRLGSSITGIVYHRVSD-LLAIALDDFSIRVVDVVTRKV--VREFWGHGNRITDMTFSPDGRWLISASMDST------ 599 (910)
T ss_pred eeeccCCCcceeeeeehhh-hhhhhcCceeEEEEEchhhhh--hHHhhccccceeeeEeCCCCcEEEEeecCCc------
Confidence 3344445678888887765 666666777889998753211 122221123567899999998555 444443
Q ss_pred eEee-CccceeeeeccccceeeeeeccccCCCcEEEEEECCCCCEEEEEEc
Q 024436 183 VLSF-PWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEE 232 (268)
Q Consensus 183 v~~~-~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~ 232 (268)
|..+ -+++.++..+.++.. ..-+.++|+|..+.+.+-
T Consensus 600 Ir~wDlpt~~lID~~~vd~~-------------~~sls~SPngD~LAT~Hv 637 (910)
T KOG1539|consen 600 IRTWDLPTGTLIDGLLVDSP-------------CTSLSFSPNGDFLATVHV 637 (910)
T ss_pred EEEEeccCcceeeeEecCCc-------------ceeeEECCCCCEEEEEEe
Confidence 3333 267877776655422 245778888888887764
No 166
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=95.13 E-value=2 Score=38.44 Aligned_cols=85 Identities=19% Similarity=0.219 Sum_probs=50.7
Q ss_pred eEEEEeCCCCeEEEeecC-CCCcce-EEEccCCCEEEEE---ecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCC
Q 024436 91 RLMKYDPATKQVTVLLGN-LSFPNG-VALSEDGNYILLA---ETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPR 165 (268)
Q Consensus 91 ~v~~~d~~~~~~~~~~~~-~~~pnG-ia~spdg~~lyva---~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~d 165 (268)
.||.+|.++-++-.-.+. -..|+| .|+++....-|++ .+..+.|+.|+... +.....+.--.|--..++++++
T Consensus 107 ~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n--l~~v~~I~aH~~~lAalafs~~ 184 (391)
T KOG2110|consen 107 SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN--LQPVNTINAHKGPLAALAFSPD 184 (391)
T ss_pred cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEccc--ceeeeEEEecCCceeEEEECCC
Confidence 478888775443222222 245666 4777765423333 45668999999764 1112222111244568999999
Q ss_pred CCEEEEEecCCC
Q 024436 166 GGFWVGIHSRRK 177 (268)
Q Consensus 166 G~l~va~~~~~~ 177 (268)
|++..+....++
T Consensus 185 G~llATASeKGT 196 (391)
T KOG2110|consen 185 GTLLATASEKGT 196 (391)
T ss_pred CCEEEEeccCce
Confidence 999887777764
No 167
>PLN00181 protein SPA1-RELATED; Provisional
Probab=95.11 E-value=4.1 Score=40.88 Aligned_cols=138 Identities=14% Similarity=0.154 Sum_probs=82.0
Q ss_pred CCcceEEECC-CCCEEEEEeCCCeEEEEeCCC-CeEEEEEEc---------CCCCCeeEEEeecCCcceEEEEeCCCCe-
Q 024436 34 IGPESLAFDA-LGEGPYTGVSDGRIIKWHQDQ-RRWLHFART---------SPNRNHISVILSGDKTGRLMKYDPATKQ- 101 (268)
Q Consensus 34 ~~P~gia~~~-dG~~l~~~~~~g~I~~~~~~g-~~~~~~~~~---------~~~~~~~~~~~~~~~~g~v~~~d~~~~~- 101 (268)
..-.+++++| ++++++++..|+.|..|+... ..+..+... .+++.+ +..+..++.|+.||..+.+
T Consensus 576 ~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~---latgs~dg~I~iwD~~~~~~ 652 (793)
T PLN00181 576 KRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRS---LAFGSADHKVYYYDLRNPKL 652 (793)
T ss_pred CCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCE---EEEEeCCCeEEEEECCCCCc
Confidence 3467899996 788889999999999998753 322222110 111222 2244567889999886543
Q ss_pred -EEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCC-ceeEEEeCC---CCCCceEEcCCCCEEEEEecCC
Q 024436 102 -VTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAG-TIEIVAQLP---GFPDNIKRSPRGGFWVGIHSRR 176 (268)
Q Consensus 102 -~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g-~~~~~~~l~---g~Pdgia~d~dG~l~va~~~~~ 176 (268)
...+......-+.+.|. +++.| ++-+..+.|..|++.....+ ....+..+. .....++++++|+++++....+
T Consensus 653 ~~~~~~~h~~~V~~v~f~-~~~~l-vs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~ 730 (793)
T PLN00181 653 PLCTMIGHSKTVSYVRFV-DSSTL-VSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETN 730 (793)
T ss_pred cceEecCCCCCEEEEEEe-CCCEE-EEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCC
Confidence 22333333345678887 66644 56667889999998632110 011122222 2345688999988766665544
No 168
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.06 E-value=0.69 Score=45.92 Aligned_cols=155 Identities=12% Similarity=0.097 Sum_probs=98.5
Q ss_pred hhhcCCCEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEE---------------Ec---------
Q 024436 18 INSSTQGVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFA---------------RT--------- 73 (268)
Q Consensus 18 ~~~~~~~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~---------------~~--------- 73 (268)
-|-++++|.++.=. ...-.+-.|.|.-++++++.-|..|..||-.|-+-...+ ..
T Consensus 121 Nwqsr~~iavltGH-nHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK 199 (1202)
T KOG0292|consen 121 NWQSRKCIAVLTGH-NHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVK 199 (1202)
T ss_pred eccCCceEEEEecC-ceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeee
Confidence 46677777766533 457778889998888888888888877775442100000 00
Q ss_pred ----CCCC--CeeE------EEe--ecCCcceEEEEeCCCCeEEE--eecCCCCcceEEEccCCCEEEEEecCCcEEEEE
Q 024436 74 ----SPNR--NHIS------VIL--SGDKTGRLMKYDPATKQVTV--LLGNLSFPNGVALSEDGNYILLAETTSCRILRY 137 (268)
Q Consensus 74 ----~~~~--~~~~------~~~--~~~~~g~v~~~d~~~~~~~~--~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~ 137 (268)
+-+| +|.. .++ .++..-.+||++.. +.+++ .-++...-.++-|.|..+ |.++++....|.+|
T Consensus 200 ~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnet-KaWEvDtcrgH~nnVssvlfhp~q~-lIlSnsEDksirVw 277 (1202)
T KOG0292|consen 200 HVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNET-KAWEVDTCRGHYNNVSSVLFHPHQD-LILSNSEDKSIRVW 277 (1202)
T ss_pred eeecccccccceEEecCCcceEEecCCcceeeEEEeccc-cceeehhhhcccCCcceEEecCccc-eeEecCCCccEEEE
Confidence 0011 2211 122 23344578888754 54443 345556667999999875 77899999999999
Q ss_pred EccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEecCCC
Q 024436 138 WLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRK 177 (268)
Q Consensus 138 ~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~~~~ 177 (268)
|++.. .....|.+-...-.-++..|..|||.|.+.++.
T Consensus 278 Dm~kR--t~v~tfrrendRFW~laahP~lNLfAAgHDsGm 315 (1202)
T KOG0292|consen 278 DMTKR--TSVQTFRRENDRFWILAAHPELNLFAAGHDSGM 315 (1202)
T ss_pred ecccc--cceeeeeccCCeEEEEEecCCcceeeeecCCce
Confidence 99742 124445443344566888889999999888873
No 169
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=95.03 E-value=2 Score=36.88 Aligned_cols=167 Identities=12% Similarity=0.104 Sum_probs=90.4
Q ss_pred CCCEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEE-----E--Ec-CCCCCeeEEEeecCCcceEE
Q 024436 22 TQGVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHF-----A--RT-SPNRNHISVILSGDKTGRLM 93 (268)
Q Consensus 22 ~~~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~-----~--~~-~~~~~~~~~~~~~~~~g~v~ 93 (268)
+|+++.+...+ .-.-++..|+|+...++..++.|.-++......... . .. -...+.+ ++...+.|.|-
T Consensus 97 ~k~~~~i~~~~--eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~--Fflt~GlG~v~ 172 (313)
T KOG1407|consen 97 GKCTARIETKG--ENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDL--FFLTNGLGCVE 172 (313)
T ss_pred CcEEEEeeccC--cceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCE--EEEecCCceEE
Confidence 34444444443 345678899999888888888888887543321110 0 00 0011101 11112334433
Q ss_pred EEeCCCCe-EEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEE
Q 024436 94 KYDPATKQ-VTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGI 172 (268)
Q Consensus 94 ~~d~~~~~-~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~ 172 (268)
.+.-..-+ +..+..+-..--.|.|+|+|+++- +.+....+.-||++. +--.+.|..+.--.+-+.+.-||+++.+.
T Consensus 173 ILsypsLkpv~si~AH~snCicI~f~p~GryfA-~GsADAlvSLWD~~E--LiC~R~isRldwpVRTlSFS~dg~~lASa 249 (313)
T KOG1407|consen 173 ILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFA-TGSADALVSLWDVDE--LICERCISRLDWPVRTLSFSHDGRMLASA 249 (313)
T ss_pred EEeccccccccccccCCcceEEEEECCCCceEe-eccccceeeccChhH--hhhheeeccccCceEEEEeccCcceeecc
Confidence 33222111 111222222233689999998653 455566778888863 22234555554224788999999988777
Q ss_pred ecCCCcceeeeEeeCccceeeeecccc
Q 024436 173 HSRRKGISKLVLSFPWIGNVLIKLPID 199 (268)
Q Consensus 173 ~~~~~~~~~~v~~~~~~g~~l~~i~~~ 199 (268)
...+. +++ .+..+|..+..|+..
T Consensus 250 SEDh~--IDI--A~vetGd~~~eI~~~ 272 (313)
T KOG1407|consen 250 SEDHF--IDI--AEVETGDRVWEIPCE 272 (313)
T ss_pred Cccce--EEe--EecccCCeEEEeecc
Confidence 66652 322 356788888888764
No 170
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=94.85 E-value=0.5 Score=42.79 Aligned_cols=104 Identities=14% Similarity=0.155 Sum_probs=74.9
Q ss_pred cCCCEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEE--------------EcCCCCCeeEEEeec
Q 024436 21 STQGVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFA--------------RTSPNRNHISVILSG 86 (268)
Q Consensus 21 ~~~~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~--------------~~~~~~~~~~~~~~~ 86 (268)
+++..+.+++++ .-.++...++|.-+.+...|+.+-.++..+..+.... ..+|++.|+. ++
T Consensus 331 s~~~~~sv~~gg--~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~Yva---AG 405 (459)
T KOG0288|consen 331 SADKTRSVPLGG--RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVA---AG 405 (459)
T ss_pred CCceeeEeecCc--ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceee---ec
Confidence 455778888887 7888999999998888777788777776655333221 1245656664 56
Q ss_pred CCcceEEEEeCCCCeEEEeecCCCC---cceEEEccCCCEEEEEec
Q 024436 87 DKTGRLMKYDPATKQVTVLLGNLSF---PNGVALSEDGNYILLAET 129 (268)
Q Consensus 87 ~~~g~v~~~d~~~~~~~~~~~~~~~---pnGia~spdg~~lyva~~ 129 (268)
..+|+||.|+..+++++.....-.. -+.++|+|-|+.|.-++.
T Consensus 406 S~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk 451 (459)
T KOG0288|consen 406 SADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADK 451 (459)
T ss_pred cCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccC
Confidence 7889999999999998876544332 367899999988876654
No 171
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.85 E-value=3 Score=41.68 Aligned_cols=102 Identities=16% Similarity=0.228 Sum_probs=66.1
Q ss_pred CcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEc-----------CCCCCeeEEEeecCCcceEEEEeCCCCe-E
Q 024436 35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFART-----------SPNRNHISVILSGDKTGRLMKYDPATKQ-V 102 (268)
Q Consensus 35 ~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~-----------~~~~~~~~~~~~~~~~g~v~~~d~~~~~-~ 102 (268)
.-+|++|.|++.+++++-+|-+|-.|+-+.++ ..|... ...-+|+.. .+++.+-+||-+ .+++ +
T Consensus 53 pVRgv~FH~~qplFVSGGDDykIkVWnYk~rr-clftL~GHlDYVRt~~FHheyPWIlS-ASDDQTIrIWNw--qsr~~i 128 (1202)
T KOG0292|consen 53 PVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR-CLFTLLGHLDYVRTVFFHHEYPWILS-ASDDQTIRIWNW--QSRKCI 128 (1202)
T ss_pred ccceeeecCCCCeEEecCCccEEEEEecccce-ehhhhccccceeEEeeccCCCceEEE-ccCCCeEEEEec--cCCceE
Confidence 57899999999977777667777666655432 111100 011123321 133344445444 4444 4
Q ss_pred EEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccC
Q 024436 103 TVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT 141 (268)
Q Consensus 103 ~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~ 141 (268)
-.+.++-++--.-+|.|-++ +.|+.+....|.+||+.|
T Consensus 129 avltGHnHYVMcAqFhptED-lIVSaSLDQTVRVWDisG 166 (1202)
T KOG0292|consen 129 AVLTGHNHYVMCAQFHPTED-LIVSASLDQTVRVWDISG 166 (1202)
T ss_pred EEEecCceEEEeeccCCccc-eEEEecccceEEEEeecc
Confidence 55566677788899999776 889999999999999986
No 172
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=94.78 E-value=3.2 Score=37.89 Aligned_cols=203 Identities=15% Similarity=0.179 Sum_probs=94.4
Q ss_pred CCEEEEEeCCCeEEEEeC-CCC-eEEEEEEcC-CCCCee--EEEeecCCcceEEEEeCCCCeEEEeecCCCCc-------
Q 024436 45 GEGPYTGVSDGRIIKWHQ-DQR-RWLHFARTS-PNRNHI--SVILSGDKTGRLMKYDPATKQVTVLLGNLSFP------- 112 (268)
Q Consensus 45 G~~l~~~~~~g~I~~~~~-~g~-~~~~~~~~~-~~~~~~--~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p------- 112 (268)
++.+|+...+|.++.+++ +|+ .|..-.... ...+.+ ..++.....+.|+.+|+++|+..=-... ..|
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~-~~~~~~~~~~ 198 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNL-DVPSLTLRGE 198 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecC-CCCcccccCC
Confidence 344666677888988886 454 232211000 000100 0112234578999999998875321111 111
Q ss_pred ceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEe-CCCCCC-------------ceEEcCCCCEEEEEecCCCc
Q 024436 113 NGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-LPGFPD-------------NIKRSPRGGFWVGIHSRRKG 178 (268)
Q Consensus 113 nGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~-l~g~Pd-------------gia~d~dG~l~va~~~~~~~ 178 (268)
...++. ++ .+|+.. .+++++.++.++++. .+.. . +.|. ...+ .+|.+|++...+..
T Consensus 199 ~sP~v~-~~-~v~~~~-~~g~v~a~d~~~G~~----~W~~~~-~~~~~~~~~~~~~~~~~sP~v-~~~~vy~~~~~g~l- 268 (394)
T PRK11138 199 SAPATA-FG-GAIVGG-DNGRVSAVLMEQGQL----IWQQRI-SQPTGATEIDRLVDVDTTPVV-VGGVVYALAYNGNL- 268 (394)
T ss_pred CCCEEE-CC-EEEEEc-CCCEEEEEEccCChh----hheecc-ccCCCccchhcccccCCCcEE-ECCEEEEEEcCCeE-
Confidence 112232 33 577654 567888888764321 1110 1 0111 1112 25678887765431
Q ss_pred ceeeeEeeCccceeeeeccccce-eee----eeccccCCCcEEEEEECC-CCCEEEEEEcCCCCceeceEEEEEeCCEEE
Q 024436 179 ISKLVLSFPWIGNVLIKLPIDIV-KIH----SSLVKLSGNGGMAMRISE-QGNVLEILEEIGRKMWRSISEVEEKDGNLW 252 (268)
Q Consensus 179 ~~~~v~~~~~~g~~l~~i~~~~~-~~~----~~~~~~~~~~~~~~~~~~-~G~~~~~~~~~~g~~~~~~s~~~~~~g~Ly 252 (268)
......+|+.+.+.+.+.. .+. .++- .... +.++.++. +|+.+.......+.. .+..+..+++||
T Consensus 269 ----~ald~~tG~~~W~~~~~~~~~~~~~~~~vy~-~~~~-g~l~ald~~tG~~~W~~~~~~~~~---~~sp~v~~g~l~ 339 (394)
T PRK11138 269 ----VALDLRSGQIVWKREYGSVNDFAVDGGRIYL-VDQN-DRVYALDTRGGVELWSQSDLLHRL---LTAPVLYNGYLV 339 (394)
T ss_pred ----EEEECCCCCEEEeecCCCccCcEEECCEEEE-EcCC-CeEEEEECCCCcEEEcccccCCCc---ccCCEEECCEEE
Confidence 2334567776655443211 000 0000 0112 34555555 355444332221211 223345689999
Q ss_pred EeeCCCCeEEEEeCCC
Q 024436 253 IGSVNMPYAGLYNYSS 268 (268)
Q Consensus 253 v~s~~~~~v~~~~~~~ 268 (268)
+++..+ +|..++.++
T Consensus 340 v~~~~G-~l~~ld~~t 354 (394)
T PRK11138 340 VGDSEG-YLHWINRED 354 (394)
T ss_pred EEeCCC-EEEEEECCC
Confidence 987654 676777653
No 173
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=94.67 E-value=3.2 Score=37.44 Aligned_cols=202 Identities=17% Similarity=0.248 Sum_probs=92.6
Q ss_pred CCEEEEEeCCCeEEEEeC-CCCe-EEEEEEcC-CCCCee--EEEeecCCcceEEEEeCCCCeEEEeecCCCC------cc
Q 024436 45 GEGPYTGVSDGRIIKWHQ-DQRR-WLHFARTS-PNRNHI--SVILSGDKTGRLMKYDPATKQVTVLLGNLSF------PN 113 (268)
Q Consensus 45 G~~l~~~~~~g~I~~~~~-~g~~-~~~~~~~~-~~~~~~--~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~------pn 113 (268)
++.+|+...+|.++.++. +|+. |..-.... ...+.. ..++.....+.|+.+|+++|+..--...... ..
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~ 184 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSA 184 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCC
Confidence 445666667788888876 4542 22110000 000000 0122234578899999988865321111000 01
Q ss_pred eEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEe-CCCCCC-------------ceEEcCCCCEEEEEecCCCcc
Q 024436 114 GVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-LPGFPD-------------NIKRSPRGGFWVGIHSRRKGI 179 (268)
Q Consensus 114 Gia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~-l~g~Pd-------------gia~d~dG~l~va~~~~~~~~ 179 (268)
..++. ++ .+|+. ...++++.+++..++ ..+.. .. .|. ...+ .++.+|++...+.
T Consensus 185 sp~~~-~~-~v~~~-~~~g~v~ald~~tG~----~~W~~~~~-~~~g~~~~~~~~~~~~~p~~-~~~~vy~~~~~g~--- 252 (377)
T TIGR03300 185 SPVIA-DG-GVLVG-FAGGKLVALDLQTGQ----PLWEQRVA-LPKGRTELERLVDVDGDPVV-DGGQVYAVSYQGR--- 252 (377)
T ss_pred CCEEE-CC-EEEEE-CCCCEEEEEEccCCC----Eeeeeccc-cCCCCCchhhhhccCCccEE-ECCEEEEEEcCCE---
Confidence 12232 33 56655 356788999886432 11211 10 010 1122 2567888776553
Q ss_pred eeeeEee-Cccceeeeeccccce-eee----eeccccCCCcEEEEEECC-CCCEEEEEEcCCCCceeceEEEEEeCCEEE
Q 024436 180 SKLVLSF-PWIGNVLIKLPIDIV-KIH----SSLVKLSGNGGMAMRISE-QGNVLEILEEIGRKMWRSISEVEEKDGNLW 252 (268)
Q Consensus 180 ~~~v~~~-~~~g~~l~~i~~~~~-~~~----~~~~~~~~~~~~~~~~~~-~G~~~~~~~~~~g~~~~~~s~~~~~~g~Ly 252 (268)
+..+ ..+|+.+...+.+.. .+. .++- .... +.++.+|. +|+.+.......+... +..+..+++||
T Consensus 253 ---l~a~d~~tG~~~W~~~~~~~~~p~~~~~~vyv-~~~~-G~l~~~d~~tG~~~W~~~~~~~~~~---ssp~i~g~~l~ 324 (377)
T TIGR03300 253 ---VAALDLRSGRVLWKRDASSYQGPAVDDNRLYV-TDAD-GVVVALDRRSGSELWKNDELKYRQL---TAPAVVGGYLV 324 (377)
T ss_pred ---EEEEECCCCcEEEeeccCCccCceEeCCEEEE-ECCC-CeEEEEECCCCcEEEccccccCCcc---ccCEEECCEEE
Confidence 3333 346776655442210 000 0010 1122 44555555 3665544422112211 22234678899
Q ss_pred EeeCCCCeEEEEeCC
Q 024436 253 IGSVNMPYAGLYNYS 267 (268)
Q Consensus 253 v~s~~~~~v~~~~~~ 267 (268)
+++.. ..|..++.+
T Consensus 325 ~~~~~-G~l~~~d~~ 338 (377)
T TIGR03300 325 VGDFE-GYLHWLSRE 338 (377)
T ss_pred EEeCC-CEEEEEECC
Confidence 88754 456666654
No 174
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=94.66 E-value=4 Score=38.53 Aligned_cols=54 Identities=15% Similarity=0.107 Sum_probs=32.2
Q ss_pred eecCCcceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEe-----------------cCCcEEEEEEccC
Q 024436 84 LSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAE-----------------TTSCRILRYWLKT 141 (268)
Q Consensus 84 ~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~-----------------~~~~~I~~~~~~~ 141 (268)
+.....|.++.+|.++|+..=-.+. . -.+++.+| +.+|+.. ...++|+.++..+
T Consensus 305 ~~g~~~G~l~ald~~tG~~~W~~~~-~-~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~t 375 (488)
T cd00216 305 VHAPKNGFFYVLDRTTGKLISARPE-V-EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKT 375 (488)
T ss_pred EEECCCceEEEEECCCCcEeeEeEe-e-ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCC
Confidence 3445678999999998865321110 0 23466666 3688742 1245777777764
No 175
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=94.65 E-value=1.5 Score=37.50 Aligned_cols=120 Identities=16% Similarity=0.169 Sum_probs=69.1
Q ss_pred CCcceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEe--CCCCCCceEEcC
Q 024436 87 DKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ--LPGFPDNIKRSP 164 (268)
Q Consensus 87 ~~~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~--l~g~Pdgia~d~ 164 (268)
...+.|..+|-.+++...-..--..++.+.+++||+.|-+++ ...|.-|+.+. ...+.. +|-....-.+.|
T Consensus 162 add~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~--gssV~Fwdaks-----f~~lKs~k~P~nV~SASL~P 234 (334)
T KOG0278|consen 162 ADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAY--GSSVKFWDAKS-----FGLLKSYKMPCNVESASLHP 234 (334)
T ss_pred ccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEec--CceeEEecccc-----ccceeeccCccccccccccC
Confidence 445566667777676555444446678999999998666554 46777787753 223322 332233345678
Q ss_pred CCCEEEEEecCCCcceeeeEeeC-ccceeeeeccccceeeeeeccccCCCcEEEEEECCCCCEEEE
Q 024436 165 RGGFWVGIHSRRKGISKLVLSFP-WIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEI 229 (268)
Q Consensus 165 dG~l~va~~~~~~~~~~~v~~~~-~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 229 (268)
+-++|||..... + +.+|. .+|+-+.....+ -..| ...++++|+|++..+
T Consensus 235 ~k~~fVaGged~-~----~~kfDy~TgeEi~~~nkg---------h~gp--VhcVrFSPdGE~yAs 284 (334)
T KOG0278|consen 235 KKEFFVAGGEDF-K----VYKFDYNTGEEIGSYNKG---------HFGP--VHCVRFSPDGELYAS 284 (334)
T ss_pred CCceEEecCcce-E----EEEEeccCCceeeecccC---------CCCc--eEEEEECCCCceeec
Confidence 878999877654 3 44444 244443332111 0112 456777777766554
No 176
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=94.49 E-value=3.2 Score=36.65 Aligned_cols=139 Identities=19% Similarity=0.222 Sum_probs=81.4
Q ss_pred CCcceEEECCCCCEEEEEeCCCeEEEEeC-CCCeEEEEEE------------------------------cCCC------
Q 024436 34 IGPESLAFDALGEGPYTGVSDGRIIKWHQ-DQRRWLHFAR------------------------------TSPN------ 76 (268)
Q Consensus 34 ~~P~gia~~~dG~~l~~~~~~g~I~~~~~-~g~~~~~~~~------------------------------~~~~------ 76 (268)
..-.+++.++||+.++++..|..|..|+. +|.....+-. .++.
T Consensus 66 ~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp 145 (405)
T KOG1273|consen 66 RPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLP 145 (405)
T ss_pred cceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeecc
Confidence 34578999999999999999999888874 4432111100 0100
Q ss_pred ----C--C----------eeEEEeecCCcceEEEEeCCCCeEEEeec--CCCCcceEEEccCCCEEEEEecCCcEEEEEE
Q 024436 77 ----R--N----------HISVILSGDKTGRLMKYDPATKQVTVLLG--NLSFPNGVALSEDGNYILLAETTSCRILRYW 138 (268)
Q Consensus 77 ----~--~----------~~~~~~~~~~~g~v~~~d~~~~~~~~~~~--~~~~pnGia~spdg~~lyva~~~~~~I~~~~ 138 (268)
. + ...-+..+...|.+..++..|-+...-.. ....-..|.++..|+ .++.++..+.|..|+
T Consensus 146 ~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~-~liiNtsDRvIR~ye 224 (405)
T KOG1273|consen 146 KDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGR-FLIINTSDRVIRTYE 224 (405)
T ss_pred CCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCc-EEEEecCCceEEEEe
Confidence 0 0 01123466777888888887654432221 123345789999997 556788888888898
Q ss_pred ccC----CCCCceeEE---EeC-CCCC-CceEEcCCCCEEEEEe
Q 024436 139 LKT----SKAGTIEIV---AQL-PGFP-DNIKRSPRGGFWVGIH 173 (268)
Q Consensus 139 ~~~----~~~g~~~~~---~~l-~g~P-dgia~d~dG~l~va~~ 173 (268)
+.. +.-+..+.. .++ ...+ ..++++.+|.+.+|..
T Consensus 225 ~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s 268 (405)
T KOG1273|consen 225 ISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGS 268 (405)
T ss_pred hhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEecc
Confidence 762 122222221 111 1122 4678888887666554
No 177
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=94.48 E-value=2.9 Score=36.11 Aligned_cols=140 Identities=16% Similarity=0.139 Sum_probs=85.7
Q ss_pred CCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcC------------CCCCeeEEEeecCCcceEEEEeCCC
Q 024436 32 GAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTS------------PNRNHISVILSGDKTGRLMKYDPAT 99 (268)
Q Consensus 32 ~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~------------~~~~~~~~~~~~~~~g~v~~~d~~~ 99 (268)
.-..-+.+|.+|.|+++.++.-|..+..+......+...+... ..++|+. +.+.++.-=|+.+|-+
T Consensus 60 hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LA-TCSRDKSVWiWe~ded- 137 (312)
T KOG0645|consen 60 HKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLA-TCSRDKSVWIWEIDED- 137 (312)
T ss_pred chheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEE-EeeCCCeEEEEEecCC-
Confidence 3356788999999998888888888887765433344444332 2333443 3333332334455533
Q ss_pred CeEE---EeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCC---CCCCceEEcCCCCEEEEEe
Q 024436 100 KQVT---VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLP---GFPDNIKRSPRGGFWVGIH 173 (268)
Q Consensus 100 ~~~~---~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~---g~Pdgia~d~dG~l~va~~ 173 (268)
.+.+ ++.++.+---++.|.|-.. |.++-+..+.|..|+-..+ ...+..+.+. +..-.+++++.|.-++++.
T Consensus 138 dEfec~aVL~~HtqDVK~V~WHPt~d-lL~S~SYDnTIk~~~~~~d--ddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~s 214 (312)
T KOG0645|consen 138 DEFECIAVLQEHTQDVKHVIWHPTED-LLFSCSYDNTIKVYRDEDD--DDWECVQTLDGHENTVWSLAFDNIGSRLVSCS 214 (312)
T ss_pred CcEEEEeeeccccccccEEEEcCCcc-eeEEeccCCeEEEEeecCC--CCeeEEEEecCccceEEEEEecCCCceEEEec
Confidence 4443 3445556667899999876 7778889999888876521 1233333342 2456788888886555555
Q ss_pred cCC
Q 024436 174 SRR 176 (268)
Q Consensus 174 ~~~ 176 (268)
...
T Consensus 215 dD~ 217 (312)
T KOG0645|consen 215 DDG 217 (312)
T ss_pred CCc
Confidence 443
No 178
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=94.45 E-value=0.2 Score=46.78 Aligned_cols=46 Identities=20% Similarity=0.255 Sum_probs=33.6
Q ss_pred ceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCC---CCCCceEEcC
Q 024436 113 NGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLP---GFPDNIKRSP 164 (268)
Q Consensus 113 nGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~---g~Pdgia~d~ 164 (268)
-.++|||||++| |+...+.-|.+|.... +++++... .....+++||
T Consensus 336 LCvcWSPDGKyI-vtGGEDDLVtVwSf~e-----rRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 336 LCVCWSPDGKYI-VTGGEDDLVTVWSFEE-----RRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EEEEEcCCccEE-EecCCcceEEEEEecc-----ceEEEeccccccceeeEeecc
Confidence 479999999855 6777778888888753 56666532 3577888885
No 179
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=94.45 E-value=0.31 Score=42.92 Aligned_cols=102 Identities=21% Similarity=0.323 Sum_probs=59.0
Q ss_pred CcceEEECCCCCEEEEEeCCCeEEEEeC-CCCeEEEEEE----------cCCCCCeeEEEeecCCcceEEEEeC-CCCe-
Q 024436 35 GPESLAFDALGEGPYTGVSDGRIIKWHQ-DQRRWLHFAR----------TSPNRNHISVILSGDKTGRLMKYDP-ATKQ- 101 (268)
Q Consensus 35 ~P~gia~~~dG~~l~~~~~~g~I~~~~~-~g~~~~~~~~----------~~~~~~~~~~~~~~~~~g~v~~~d~-~~~~- 101 (268)
.-.++.|+.|..++.++..||+|-.|.- .|..+..|.. .+.+.. .+++. ......|+.. ++|+
T Consensus 265 aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~S---qiLS~-sfD~tvRiHGlKSGK~ 340 (508)
T KOG0275|consen 265 AVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNS---QILSA-SFDQTVRIHGLKSGKC 340 (508)
T ss_pred ceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcc---hhhcc-cccceEEEeccccchh
Confidence 4678899999999999988988765532 2221111110 000100 01111 1112222221 2232
Q ss_pred EEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccC
Q 024436 102 VTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT 141 (268)
Q Consensus 102 ~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~ 141 (268)
++.+.+.-.+-|...|++||.++. +.+..+.|.+|+...
T Consensus 341 LKEfrGHsSyvn~a~ft~dG~~ii-saSsDgtvkvW~~Kt 379 (508)
T KOG0275|consen 341 LKEFRGHSSYVNEATFTDDGHHII-SASSDGTVKVWHGKT 379 (508)
T ss_pred HHHhcCccccccceEEcCCCCeEE-EecCCccEEEecCcc
Confidence 334456678899999999998774 667789999998764
No 180
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=94.19 E-value=4.6 Score=37.26 Aligned_cols=218 Identities=14% Similarity=0.173 Sum_probs=111.5
Q ss_pred HhhhhcCCCEE---EEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCC-CCeEEEEE---------EcCCCCCeeEE
Q 024436 16 LFINSSTQGVV---QYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQD-QRRWLHFA---------RTSPNRNHISV 82 (268)
Q Consensus 16 ~~~~~~~~~~~---~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~-g~~~~~~~---------~~~~~~~~~~~ 82 (268)
++.|.=.|..+ .+-+|+ .-.+++.+|+|.+++.+.-.|.|+.|... |..+..+. ..+.++. .
T Consensus 63 l~vw~i~k~~~~~q~~v~Pg--~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs---~ 137 (476)
T KOG0646|consen 63 LHVWEILKKDQVVQYIVLPG--PVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGS---H 137 (476)
T ss_pred ccccccCchhhhhhhccccc--ceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCc---E
Confidence 44455444322 233443 35788999999977777788999999864 43211110 1122222 2
Q ss_pred EeecCCcceEEEEeCCC-------CeE---EEeecCCCCcceEEEccCC--CEEEEEecCCcEEEEEEccCCCCCceeEE
Q 024436 83 ILSGDKTGRLMKYDPAT-------KQV---TVLLGNLSFPNGVALSEDG--NYILLAETTSCRILRYWLKTSKAGTIEIV 150 (268)
Q Consensus 83 ~~~~~~~g~v~~~d~~~-------~~~---~~~~~~~~~pnGia~spdg--~~lyva~~~~~~I~~~~~~~~~~g~~~~~ 150 (268)
++++.++|.|+.|+.-+ +.+ ..+.++--.-..+..++.| .+|| +.+..+.+..|++..+.+ -.-
T Consensus 138 iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~-TaS~D~t~k~wdlS~g~L---Llt 213 (476)
T KOG0646|consen 138 IITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLY-TASEDRTIKLWDLSLGVL---LLT 213 (476)
T ss_pred EEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEE-EecCCceEEEEEecccee---eEE
Confidence 33556677776654320 111 1111111111234444332 2466 556778999999975321 111
Q ss_pred EeCCCCCCceEEcCCCC-EEEEEecCCCcceeeeEeeCccceeeeeccccceeeeeeccccCCCcEEEEEECCCCCEEEE
Q 024436 151 AQLPGFPDNIKRSPRGG-FWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEI 229 (268)
Q Consensus 151 ~~l~g~Pdgia~d~dG~-l~va~~~~~~~~~~~v~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 229 (268)
...|.-+..+++||.++ +|++...+. +..... ...+ +.+.. ...-..+..+.-..+
T Consensus 214 i~fp~si~av~lDpae~~~yiGt~~G~------I~~~~~-----~~~~-----------~~~~~-v~~k~~~~~~t~~~~ 270 (476)
T KOG0646|consen 214 ITFPSSIKAVALDPAERVVYIGTEEGK------IFQNLL-----FKLS-----------GQSAG-VNQKGRHEENTQINV 270 (476)
T ss_pred EecCCcceeEEEcccccEEEecCCcce------EEeeeh-----hcCC-----------ccccc-ccccccccccceeee
Confidence 12465688999999875 677665553 211110 0000 00110 112233345555566
Q ss_pred EEcCCCCceeceEEEEE-eCCEEEEeeCCCCeEEEEeCC
Q 024436 230 LEEIGRKMWRSISEVEE-KDGNLWIGSVNMPYAGLYNYS 267 (268)
Q Consensus 230 ~~~~~g~~~~~~s~~~~-~~g~Lyv~s~~~~~v~~~~~~ 267 (268)
+.+..++ +.+|..+. .+|.|.+.+-.++.|.+-|..
T Consensus 271 ~~Gh~~~--~~ITcLais~DgtlLlSGd~dg~VcvWdi~ 307 (476)
T KOG0646|consen 271 LVGHENE--SAITCLAISTDGTLLLSGDEDGKVCVWDIY 307 (476)
T ss_pred eccccCC--cceeEEEEecCccEEEeeCCCCCEEEEecc
Confidence 6554332 45666544 577888777777777666543
No 181
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=94.06 E-value=0.21 Score=29.63 Aligned_cols=36 Identities=25% Similarity=0.087 Sum_probs=28.1
Q ss_pred cCCCCCcceEEECCCCC-EEEEEeCCCeEEEEeCCCC
Q 024436 30 IEGAIGPESLAFDALGE-GPYTGVSDGRIIKWHQDQR 65 (268)
Q Consensus 30 ~~~~~~P~gia~~~dG~-~l~~~~~~g~I~~~~~~g~ 65 (268)
..++..|+|+|+++.++ +|+++...+.|.+.+.+|.
T Consensus 5 ~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~ 41 (43)
T smart00135 5 SEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT 41 (43)
T ss_pred ECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCC
Confidence 34577899999999866 5557777889988887764
No 182
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=93.96 E-value=3.5 Score=35.15 Aligned_cols=158 Identities=16% Similarity=0.207 Sum_probs=87.9
Q ss_pred EEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCC-CCeEEEEEEcCC------CCCeeEEEeecCCcceEEEEeCCC
Q 024436 27 QYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQD-QRRWLHFARTSP------NRNHISVILSGDKTGRLMKYDPAT 99 (268)
Q Consensus 27 ~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~-g~~~~~~~~~~~------~~~~~~~~~~~~~~g~v~~~d~~~ 99 (268)
.+++|. -+.+-++|.-+-++..-+|+.++.++.. |+.-..+-..+. .|+--..++++..+|.+..+|.+|
T Consensus 111 ~~evPe---INam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt 187 (325)
T KOG0649|consen 111 AVEVPE---INAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKT 187 (325)
T ss_pred cccCCc---cceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccc
Confidence 355554 4567788754434444488888888864 442222211110 111122456778889999999998
Q ss_pred CeEEEeecCCCCcce---------EEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEE
Q 024436 100 KQVTVLLGNLSFPNG---------VALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWV 170 (268)
Q Consensus 100 ~~~~~~~~~~~~pnG---------ia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~v 170 (268)
++.....+....||- .|+.-+.++|.+-. ...+..|.+.. .+......+|+...-+.++.| .+ +
T Consensus 188 ~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGg--Gp~lslwhLrs---se~t~vfpipa~v~~v~F~~d-~v-l 260 (325)
T KOG0649|consen 188 QKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGG--GPKLSLWHLRS---SESTCVFPIPARVHLVDFVDD-CV-L 260 (325)
T ss_pred cceeEEeccccChhhcCcccCceeEEEeccCceEEecC--CCceeEEeccC---CCceEEEecccceeEeeeecc-eE-E
Confidence 887777666555543 34444555664432 23445555432 112222335554556666654 33 3
Q ss_pred EEecCCCcceeeeEeeCccceeeeecccc
Q 024436 171 GIHSRRKGISKLVLSFPWIGNVLIKLPID 199 (268)
Q Consensus 171 a~~~~~~~~~~~v~~~~~~g~~l~~i~~~ 199 (268)
+...+++ |+.|+-.|.+-..+|..
T Consensus 261 ~~G~g~~-----v~~~~l~Gvl~a~ip~~ 284 (325)
T KOG0649|consen 261 IGGEGNH-----VQSYTLNGVLQANIPVE 284 (325)
T ss_pred Eeccccc-----eeeeeeccEEEEeccCC
Confidence 3333333 77888778877777765
No 183
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=93.93 E-value=0.97 Score=44.40 Aligned_cols=63 Identities=19% Similarity=0.263 Sum_probs=44.2
Q ss_pred CCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEecCC
Q 024436 110 SFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRR 176 (268)
Q Consensus 110 ~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~~~ 176 (268)
..-++++|++||.+|| +....+-+.+|..+.+ .++-+.++.+---++.+.+|+.+|.-..+.+
T Consensus 252 ~~V~~L~fS~~G~~Ll-SGG~E~VLv~Wq~~T~---~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DN 314 (792)
T KOG1963|consen 252 DEVNSLSFSSDGAYLL-SGGREGVLVLWQLETG---KKQFLPRLGSPILHIVVSPDSDLYSLVLEDN 314 (792)
T ss_pred cccceeEEecCCceEe-ecccceEEEEEeecCC---CcccccccCCeeEEEEEcCCCCeEEEEecCc
Confidence 4467999999999887 5556677777887643 2333344544457899999999877666654
No 184
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.83 E-value=0.3 Score=41.29 Aligned_cols=34 Identities=18% Similarity=0.293 Sum_probs=29.6
Q ss_pred CCCCcceEEEccCCCEEEEEecCCcEEEEEEccCC
Q 024436 108 NLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS 142 (268)
Q Consensus 108 ~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~ 142 (268)
.-..|.|++++.+|+ |||+-...++|+++++.++
T Consensus 210 e~~~PDGm~ID~eG~-L~Va~~ng~~V~~~dp~tG 243 (310)
T KOG4499|consen 210 ESLEPDGMTIDTEGN-LYVATFNGGTVQKVDPTTG 243 (310)
T ss_pred CCCCCCcceEccCCc-EEEEEecCcEEEEECCCCC
Confidence 346799999999995 9999999999999998754
No 185
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=93.82 E-value=1.4 Score=41.19 Aligned_cols=62 Identities=24% Similarity=0.322 Sum_probs=42.2
Q ss_pred CcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCC-CC-CceEEcCCCCEEEEEec
Q 024436 111 FPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPG-FP-DNIKRSPRGGFWVGIHS 174 (268)
Q Consensus 111 ~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g-~P-dgia~d~dG~l~va~~~ 174 (268)
--..|.||+||++| .+-...+.+.+|++..-+ ....++..|+. +| .+.++.|+.+|.++...
T Consensus 366 ~Itsi~FS~dg~~L-lSRg~D~tLKvWDLrq~k-kpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS 429 (641)
T KOG0772|consen 366 DITSISFSYDGNYL-LSRGFDDTLKVWDLRQFK-KPLNVRTGLPTPFPGTDCCFSPDDKLILTGTS 429 (641)
T ss_pred ceeEEEeccccchh-hhccCCCceeeeeccccc-cchhhhcCCCccCCCCccccCCCceEEEeccc
Confidence 34589999999855 588888999999997421 11122223432 23 47899999998887653
No 186
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=93.76 E-value=4.1 Score=36.61 Aligned_cols=86 Identities=22% Similarity=0.161 Sum_probs=54.4
Q ss_pred CcceEEEEeCCCCeEEEee-cCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCC
Q 024436 88 KTGRLMKYDPATKQVTVLL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRG 166 (268)
Q Consensus 88 ~~g~v~~~d~~~~~~~~~~-~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG 166 (268)
....|..+|++++.-..+. .++..-.-+-|||||+.||.+ +.+.....|...... ..+.+...+|...+-+++|+|
T Consensus 216 gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaA-t~davfrlw~e~q~w--t~erw~lgsgrvqtacWspcG 292 (445)
T KOG2139|consen 216 GSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAA-TCDAVFRLWQENQSW--TKERWILGSGRVQTACWSPCG 292 (445)
T ss_pred CcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEe-cccceeeeehhcccc--eecceeccCCceeeeeecCCC
Confidence 4456788888887665554 444444458999999977655 455555555433211 123344456778889999999
Q ss_pred C-EEEEEecCC
Q 024436 167 G-FWVGIHSRR 176 (268)
Q Consensus 167 ~-l~va~~~~~ 176 (268)
+ |+.+..+..
T Consensus 293 sfLLf~~sgsp 303 (445)
T KOG2139|consen 293 SFLLFACSGSP 303 (445)
T ss_pred CEEEEEEcCCc
Confidence 7 555665543
No 187
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=93.60 E-value=4.1 Score=34.63 Aligned_cols=149 Identities=13% Similarity=0.080 Sum_probs=86.5
Q ss_pred CEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeC-CCCeEEEEEEcCCC-----CCee-EEEeecCCcceEEEEe
Q 024436 24 GVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQ-DQRRWLHFARTSPN-----RNHI-SVILSGDKTGRLMKYD 96 (268)
Q Consensus 24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~-~g~~~~~~~~~~~~-----~~~~-~~~~~~~~~g~v~~~d 96 (268)
..+.+.-.. ..-..+.+.-||+..++.-.+..|..|+| .|..+..+...+-. ..+- ..+.+..+.-.++.||
T Consensus 9 r~~~l~~~q-gaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD 87 (307)
T KOG0316|consen 9 RLSILDCAQ-GAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWD 87 (307)
T ss_pred hceeecccc-cceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEE
Confidence 444444332 24567789999995454444566666776 44444444321100 0000 0112334455788889
Q ss_pred CCCCeEE-EeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCce-EEcCCCCEEEEEec
Q 024436 97 PATKQVT-VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNI-KRSPRGGFWVGIHS 174 (268)
Q Consensus 97 ~~~~~~~-~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgi-a~d~dG~l~va~~~ 174 (268)
-.||++. .+-.+...-|-++|..+- .+.++.+....+..||-.... .+++.-+.-.-||+ .+|-.++..++...
T Consensus 88 V~TGkv~Rr~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s---~ePiQildea~D~V~Si~v~~heIvaGS~ 163 (307)
T KOG0316|consen 88 VNTGKVDRRFRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRS---FEPIQILDEAKDGVSSIDVAEHEIVAGSV 163 (307)
T ss_pred cccCeeeeecccccceeeEEEecCcc-eEEEeccccceeEEEEcccCC---CCccchhhhhcCceeEEEecccEEEeecc
Confidence 8888864 455677888999999776 588899999999999875322 12222121123443 55666777776655
Q ss_pred CCC
Q 024436 175 RRK 177 (268)
Q Consensus 175 ~~~ 177 (268)
.++
T Consensus 164 DGt 166 (307)
T KOG0316|consen 164 DGT 166 (307)
T ss_pred CCc
Confidence 543
No 188
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=93.45 E-value=1.3 Score=40.27 Aligned_cols=89 Identities=19% Similarity=0.285 Sum_probs=50.4
Q ss_pred CEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcCCCCCeeEEEeecCCcceEE-EEeCCCCeE
Q 024436 24 GVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRNHISVILSGDKTGRLM-KYDPATKQV 102 (268)
Q Consensus 24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~v~-~~d~~~~~~ 102 (268)
-++.|.++. +|||.++|.+-..+|++.++--||++..+-.. ...+.+. ..+. ..+
T Consensus 200 lVR~f~~~s--Q~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~--------------------~~~~~~v~~~~g--~~l 255 (381)
T PF02333_consen 200 LVREFKVGS--QPEGCVVDDETGRLYVGEEDVGIWRYDAEPEG--------------------GNDRTLVASADG--DGL 255 (381)
T ss_dssp EEEEEE-SS---EEEEEEETTTTEEEEEETTTEEEEEESSCCC---------------------S--EEEEEBSS--SSB
T ss_pred EEEEecCCC--cceEEEEecccCCEEEecCccEEEEEecCCCC--------------------CCcceeeecccc--ccc
Confidence 366676665 77777777776667777777777777644210 0001111 1111 001
Q ss_pred EEeecCCCCcceEEEcc--CC-CEEEEEecCCcEEEEEEccCC
Q 024436 103 TVLLGNLSFPNGVALSE--DG-NYILLAETTSCRILRYWLKTS 142 (268)
Q Consensus 103 ~~~~~~~~~pnGia~sp--dg-~~lyva~~~~~~I~~~~~~~~ 142 (268)
. .-..||++-. +| .+|++|+..++...+|+..+.
T Consensus 256 ~------aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 256 V------ADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp -------S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred c------cCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 0 1245777743 33 389999999999999998753
No 189
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=93.37 E-value=7 Score=36.67 Aligned_cols=136 Identities=21% Similarity=0.200 Sum_probs=80.5
Q ss_pred CCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcCCCCCeeE------EEeecCCcceEEEEeCCCCeE--EEe
Q 024436 34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRNHIS------VILSGDKTGRLMKYDPATKQV--TVL 105 (268)
Q Consensus 34 ~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~~~~~~~------~~~~~~~~g~v~~~d~~~~~~--~~~ 105 (268)
+.--+++|.++|+ .+++..+|.|+.|++++..++..+..-+++-|.. .++++.++-+|..+|.+-.+. ..+
T Consensus 247 k~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~el 325 (626)
T KOG2106|consen 247 KFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETEL 325 (626)
T ss_pred eEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEeccccccccccccC
Confidence 4566899999999 8888889999999998876544333223322211 123444555666666432222 224
Q ss_pred ecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEecCC
Q 024436 106 LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRR 176 (268)
Q Consensus 106 ~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~~~ 176 (268)
.+....+.-|+=.. + -|||- +..+.|..=.+.++. +..++.... .--|++..|+.++|+++....
T Consensus 326 Pe~~G~iRtv~e~~-~-di~vG-TtrN~iL~Gt~~~~f--~~~v~gh~d-elwgla~hps~~q~~T~gqdk 390 (626)
T KOG2106|consen 326 PEQFGPIRTVAEGK-G-DILVG-TTRNFILQGTLENGF--TLTVQGHGD-ELWGLATHPSKNQLLTCGQDK 390 (626)
T ss_pred chhcCCeeEEecCC-C-cEEEe-eccceEEEeeecCCc--eEEEEeccc-ceeeEEcCCChhheeeccCcc
Confidence 45555565555443 2 37765 455777766665432 123333322 356889998888887776554
No 190
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=93.36 E-value=5.2 Score=35.09 Aligned_cols=107 Identities=14% Similarity=0.125 Sum_probs=71.8
Q ss_pred CCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEE-EEEEcCCC--CCeeE--EEeecCCcceEEEEeCCCCeEEEeecC
Q 024436 34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWL-HFARTSPN--RNHIS--VILSGDKTGRLMKYDPATKQVTVLLGN 108 (268)
Q Consensus 34 ~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~-~~~~~~~~--~~~~~--~~~~~~~~g~v~~~d~~~~~~~~~~~~ 108 (268)
.+-..+-|+|.++.+.++.-||.+...+.+..... .+-...|- -.|.. ..+.+.-.|.|.++|..++....+..+
T Consensus 14 d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~igth 93 (323)
T KOG1036|consen 14 DGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIGTH 93 (323)
T ss_pred hceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCCcceeeccC
Confidence 34567888988777888888888877765443111 11000000 00111 234556778999999998887777777
Q ss_pred CCCcceEEEccCCCEEEEEecCCcEEEEEEccC
Q 024436 109 LSFPNGVALSEDGNYILLAETTSCRILRYWLKT 141 (268)
Q Consensus 109 ~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~ 141 (268)
...-.+|..++... ..|+.++.++|..||...
T Consensus 94 ~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~ 125 (323)
T KOG1036|consen 94 DEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRN 125 (323)
T ss_pred CCceEEEEeeccCC-eEEEcccCccEEEEeccc
Confidence 66667899997654 678999999999999763
No 191
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=93.35 E-value=5.4 Score=35.33 Aligned_cols=101 Identities=19% Similarity=0.174 Sum_probs=56.1
Q ss_pred CcceEEECCCCCEEEEEeCCCeEEE---Ee--CCCCeEEEEE------------------EcCCCCCeeEEEeecCCcce
Q 024436 35 GPESLAFDALGEGPYTGVSDGRIIK---WH--QDQRRWLHFA------------------RTSPNRNHISVILSGDKTGR 91 (268)
Q Consensus 35 ~P~gia~~~dG~~l~~~~~~g~I~~---~~--~~g~~~~~~~------------------~~~~~~~~~~~~~~~~~~g~ 91 (268)
.|.-++|.||-+-+++....|.-++ .. .||..-..+. ...++..|+. +......
T Consensus 134 hpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~im---sas~dt~ 210 (420)
T KOG2096|consen 134 HPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIM---SASLDTK 210 (420)
T ss_pred CceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEE---EecCCCc
Confidence 6999999999888888776543333 22 2343211110 0011112221 2233446
Q ss_pred EEEEeCCCCeEEEee-cCCCCcceEEEccCCCEEEEEecCCcEEEEEEcc
Q 024436 92 LMKYDPATKQVTVLL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLK 140 (268)
Q Consensus 92 v~~~d~~~~~~~~~~-~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~ 140 (268)
|..|+.+ |++-.-. .....-..-++||||++|.++. .+.-|.+|.+-
T Consensus 211 i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~g-FTpDVkVwE~~ 258 (420)
T KOG2096|consen 211 ICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSG-FTPDVKVWEPI 258 (420)
T ss_pred EEEEecC-CceeeeeccccccccceeeCCCCcEEEEec-CCCCceEEEEE
Confidence 7777777 5543333 3333344679999998776554 55667777664
No 192
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=93.29 E-value=5.3 Score=35.24 Aligned_cols=65 Identities=18% Similarity=0.157 Sum_probs=43.2
Q ss_pred cCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCC-CCCce-eEEEeCC--------CCCCceEEcCCCCEEEEE
Q 024436 107 GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS-KAGTI-EIVAQLP--------GFPDNIKRSPRGGFWVGI 172 (268)
Q Consensus 107 ~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~-~~g~~-~~~~~l~--------g~Pdgia~d~dG~l~va~ 172 (268)
..+..|=||+++|.+ .++|++..++....|+.+.. +.+.. .....+| +.|.|+.+..-..+-|..
T Consensus 20 p~L~N~WGia~~p~~-~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~ 94 (336)
T TIGR03118 20 PGLRNAWGLSYRPGG-PFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSG 94 (336)
T ss_pred ccccccceeEecCCC-CEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcC
Confidence 346677899999988 69999999999999998621 11111 1122232 478899987654444443
No 193
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=93.04 E-value=0.15 Score=47.57 Aligned_cols=77 Identities=18% Similarity=0.148 Sum_probs=49.6
Q ss_pred CcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEecCCCcceeeeEeeC-cc
Q 024436 111 FPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFP-WI 189 (268)
Q Consensus 111 ~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~~~~~~~~~v~~~~-~~ 189 (268)
.+|.++|+|||++|-+ -+..+.+.+|+.+...+ ..+...--|.---+++.|||++.+....... |.++. ..
T Consensus 292 ~in~f~FS~DG~~LA~-VSqDGfLRvF~fdt~eL--lg~mkSYFGGLLCvcWSPDGKyIvtGGEDDL-----VtVwSf~e 363 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLAT-VSQDGFLRIFDFDTQEL--LGVMKSYFGGLLCVCWSPDGKYIVTGGEDDL-----VTVWSFEE 363 (636)
T ss_pred cccceeEcCCCceEEE-EecCceEEEeeccHHHH--HHHHHhhccceEEEEEcCCccEEEecCCcce-----EEEEEecc
Confidence 6899999999998754 45678889998874211 0111111133447899999998887666542 55554 45
Q ss_pred ceeeee
Q 024436 190 GNVLIK 195 (268)
Q Consensus 190 g~~l~~ 195 (268)
++++++
T Consensus 364 rRVVAR 369 (636)
T KOG2394|consen 364 RRVVAR 369 (636)
T ss_pred ceEEEe
Confidence 666554
No 194
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=92.80 E-value=2.7 Score=38.21 Aligned_cols=136 Identities=18% Similarity=0.168 Sum_probs=78.3
Q ss_pred CEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCC-eEEEEE--------EcCCCCCeeEEEeecCCcceEEE
Q 024436 24 GVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQR-RWLHFA--------RTSPNRNHISVILSGDKTGRLMK 94 (268)
Q Consensus 24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~-~~~~~~--------~~~~~~~~~~~~~~~~~~g~v~~ 94 (268)
|..++.... +...|+.. +..+.++..|.+|.-|+..+. ...... ..+.++ ..++.......+-.
T Consensus 295 C~kt~l~~S--~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g---~~lLsssRDdtl~v 367 (459)
T KOG0288|consen 295 CSKTVLPGS--QCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDG---LELLSSSRDDTLKV 367 (459)
T ss_pred eeccccccc--cccceEec--ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCC---eEEeeecCCCceee
Confidence 444444443 56677766 344666777888877774322 111111 111222 12233345667778
Q ss_pred EeCCCCeEEEeecC--C---CCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCC---CCceEEcCCC
Q 024436 95 YDPATKQVTVLLGN--L---SFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGF---PDNIKRSPRG 166 (268)
Q Consensus 95 ~d~~~~~~~~~~~~--~---~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~---Pdgia~d~dG 166 (268)
+|..+.++...... + +-.+-+.||||+.++ .+.+.+++|+.|++.+++ .+.....++- -.-+++++.|
T Consensus 368 iDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~Yv-aAGS~dgsv~iW~v~tgK---lE~~l~~s~s~~aI~s~~W~~sG 443 (459)
T KOG0288|consen 368 IDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYV-AAGSADGSVYIWSVFTGK---LEKVLSLSTSNAAITSLSWNPSG 443 (459)
T ss_pred eecccccEEEEeeccccccccccceeEECCCCcee-eeccCCCcEEEEEccCce---EEEEeccCCCCcceEEEEEcCCC
Confidence 88887777665422 2 235789999999744 577888999999998754 3333333322 2456777777
Q ss_pred CEEE
Q 024436 167 GFWV 170 (268)
Q Consensus 167 ~l~v 170 (268)
.-.+
T Consensus 444 ~~Ll 447 (459)
T KOG0288|consen 444 SGLL 447 (459)
T ss_pred chhh
Confidence 5333
No 195
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=92.73 E-value=5.7 Score=38.93 Aligned_cols=147 Identities=14% Similarity=0.148 Sum_probs=84.7
Q ss_pred CCCEEEEecCCCCCcceEEECC-CCCEEEEEeCCCeEEEEeCCCCeEEEEEE---------cCCCCCeeEEEeecCCcce
Q 024436 22 TQGVVQYQIEGAIGPESLAFDA-LGEGPYTGVSDGRIIKWHQDQRRWLHFAR---------TSPNRNHISVILSGDKTGR 91 (268)
Q Consensus 22 ~~~~~~i~~~~~~~P~gia~~~-dG~~l~~~~~~g~I~~~~~~g~~~~~~~~---------~~~~~~~~~~~~~~~~~g~ 91 (268)
..++.+|..+. .-.+++|.| |.+.++++.-||+|..|+-....+..+.. ..|++++.. -+.-+|.
T Consensus 400 ~~CL~~F~Hnd--fVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~av---IGt~~G~ 474 (712)
T KOG0283|consen 400 KECLKVFSHND--FVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAV---IGTFNGY 474 (712)
T ss_pred cceeeEEecCC--eeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEE---EEEeccE
Confidence 34788888886 789999999 56666778889999888754443333321 235554321 2234566
Q ss_pred EEEEeCCCCeEEEee---------cCCCCcceEEEccCCC-EEEEEecCCcEEEEEEccCCCCCceeEEEeC--CCCCCc
Q 024436 92 LMKYDPATKQVTVLL---------GNLSFPNGVALSEDGN-YILLAETTSCRILRYWLKTSKAGTIEIVAQL--PGFPDN 159 (268)
Q Consensus 92 v~~~d~~~~~~~~~~---------~~~~~pnGia~spdg~-~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l--~g~Pdg 159 (268)
...|+...-+.+.-. .....-.|+.+.|... .|.|| +...+|..|+..+..+ ...|... .+-..-
T Consensus 475 C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVT-SnDSrIRI~d~~~~~l--v~KfKG~~n~~SQ~~ 551 (712)
T KOG0283|consen 475 CRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVT-SNDSRIRIYDGRDKDL--VHKFKGFRNTSSQIS 551 (712)
T ss_pred EEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEe-cCCCceEEEeccchhh--hhhhcccccCCccee
Confidence 666766644433211 0112456898886543 37776 4678999999743221 1112110 012333
Q ss_pred eEEcCCCCEEEEEecCC
Q 024436 160 IKRSPRGGFWVGIHSRR 176 (268)
Q Consensus 160 ia~d~dG~l~va~~~~~ 176 (268)
-.++.||+..|+....+
T Consensus 552 Asfs~Dgk~IVs~seDs 568 (712)
T KOG0283|consen 552 ASFSSDGKHIVSASEDS 568 (712)
T ss_pred eeEccCCCEEEEeecCc
Confidence 45666887666665443
No 196
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=92.69 E-value=1.8 Score=39.27 Aligned_cols=116 Identities=14% Similarity=0.158 Sum_probs=72.2
Q ss_pred CEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEE-EcCCCCC----e------eEEEeecCCcceE
Q 024436 24 GVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFA-RTSPNRN----H------ISVILSGDKTGRL 92 (268)
Q Consensus 24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~-~~~~~~~----~------~~~~~~~~~~g~v 92 (268)
++.++..|. .-.++.|..||.++.+...|.+|..+++....+..-+ ...+.++ | +..-++....-.+
T Consensus 166 ali~l~hpd--~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~ 243 (472)
T KOG0303|consen 166 ALITLDHPD--MVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQI 243 (472)
T ss_pred eeeecCCCC--eEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccce
Confidence 444444443 5788899999999999999999988988543222211 1111111 1 1111122223345
Q ss_pred EEEeCCCCeEEEeecCCCCcceEE---EccCCCEEEEEecCCcEEEEEEccC
Q 024436 93 MKYDPATKQVTVLLGNLSFPNGVA---LSEDGNYILLAETTSCRILRYWLKT 141 (268)
Q Consensus 93 ~~~d~~~~~~~~~~~~~~~pnGia---~spdg~~lyva~~~~~~I~~~~~~~ 141 (268)
-.+|+++-+.-.....+...||+- ++||.+.+|++.-+.+.|..|.+..
T Consensus 244 aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~ 295 (472)
T KOG0303|consen 244 ALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITN 295 (472)
T ss_pred eccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecC
Confidence 566776433323344556677875 5899999999999999999999874
No 197
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=92.51 E-value=2.8 Score=38.57 Aligned_cols=64 Identities=17% Similarity=0.265 Sum_probs=48.0
Q ss_pred CcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEe--CCCCCCceEEcCCCC-EEEEEecCC
Q 024436 111 FPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ--LPGFPDNIKRSPRGG-FWVGIHSRR 176 (268)
Q Consensus 111 ~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~--l~g~Pdgia~d~dG~-l~va~~~~~ 176 (268)
+-|+++..|..+ |+.+.+.+++|..|.+..+. .....+.. +.|..+.+++..+|+ ++++...-+
T Consensus 382 Witsla~i~~sd-L~asGS~~G~vrLW~i~~g~-r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGkEh 448 (479)
T KOG0299|consen 382 WITSLAVIPGSD-LLASGSWSGCVRLWKIEDGL-RAINLLYSLSLVGFVNSLAFSNSGKRIVAGIGKEH 448 (479)
T ss_pred ceeeeEecccCc-eEEecCCCCceEEEEecCCc-cccceeeecccccEEEEEEEccCCCEEEEeccccc
Confidence 568999999775 88999999999999887531 12344444 458889999999998 777665444
No 198
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=92.42 E-value=3.4 Score=36.44 Aligned_cols=71 Identities=13% Similarity=0.190 Sum_probs=48.2
Q ss_pred EEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCC-CceeEEEeCCCCCCceEEcCCCCEEEEEec
Q 024436 102 VTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKA-GTIEIVAQLPGFPDNIKRSPRGGFWVGIHS 174 (268)
Q Consensus 102 ~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~-g~~~~~~~l~g~Pdgia~d~dG~l~va~~~ 174 (268)
++.+.+...--|.+.|.|... +.++.+..+.|.-||...... ....+|.+.. ....|.+.|.|.+......
T Consensus 165 IRTlYDH~devn~l~FHPre~-ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~-~vrsiSfHPsGefllvgTd 236 (430)
T KOG0640|consen 165 IRTLYDHVDEVNDLDFHPRET-ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTE-PVRSISFHPSGEFLLVGTD 236 (430)
T ss_pred EeehhhccCcccceeecchhh-eEEeccCCCeEEEEecccHHHHHHHHHhhccc-eeeeEeecCCCceEEEecC
Confidence 445566667779999999985 888999999999999874321 1122333321 3578899999985554433
No 199
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=92.40 E-value=6 Score=33.36 Aligned_cols=59 Identities=14% Similarity=0.202 Sum_probs=36.1
Q ss_pred cceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEe
Q 024436 112 PNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIH 173 (268)
Q Consensus 112 pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~ 173 (268)
-..++++|.|+ |.++.-.....+.||+.|+.. ...|..-..--+.+.+.|.-.+.+.+.
T Consensus 234 vaav~vdpsgr-ll~sg~~dssc~lydirg~r~--iq~f~phsadir~vrfsp~a~yllt~s 292 (350)
T KOG0641|consen 234 VAAVAVDPSGR-LLASGHADSSCMLYDIRGGRM--IQRFHPHSADIRCVRFSPGAHYLLTCS 292 (350)
T ss_pred eEEEEECCCcc-eeeeccCCCceEEEEeeCCce--eeeeCCCccceeEEEeCCCceEEEEec
Confidence 34689999996 778877777888899986432 122211112345677887555444443
No 200
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=92.35 E-value=10 Score=35.83 Aligned_cols=147 Identities=16% Similarity=0.196 Sum_probs=72.6
Q ss_pred CcceEEEEeCCCCeEEEeecCCCCcc-eEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCC----CCceEE
Q 024436 88 KTGRLMKYDPATKQVTVLLGNLSFPN-GVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGF----PDNIKR 162 (268)
Q Consensus 88 ~~g~v~~~d~~~~~~~~~~~~~~~pn-Gia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~----Pdgia~ 162 (268)
.....+.+|.+ |.++-......... .+...++|+.++.+. +++..+++.|. .....++++. -+.+..
T Consensus 126 ~~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~---~~~~e~D~~G~----v~~~~~l~~~~~~~HHD~~~ 197 (477)
T PF05935_consen 126 SSSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG---NRLYEIDLLGK----VIWEYDLPGGYYDFHHDIDE 197 (477)
T ss_dssp BEEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB---TEEEEE-TT------EEEEEE--TTEE-B-S-EEE
T ss_pred CCceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC---CceEEEcCCCC----EEEeeecCCcccccccccEE
Confidence 45678888887 77764433222222 177889997554443 89999998762 2222345542 478889
Q ss_pred cCCCCEEEEEecCCCcceeeeEeeCccceeeeeccccceeeeeeccccCCCcEEEEEECCCCCEEEEEEcCC-----C--
Q 024436 163 SPRGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILEEIG-----R-- 235 (268)
Q Consensus 163 d~dG~l~va~~~~~~~~~~~v~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~-----g-- 235 (268)
.++|++++..+.... ... . .... .. . -.++.+|++|+++..++-.+ .
T Consensus 198 l~nGn~L~l~~~~~~-----~~~-~----------~~~~----~~----~--D~Ivevd~tG~vv~~wd~~d~ld~~~~~ 251 (477)
T PF05935_consen 198 LPNGNLLILASETKY-----VDE-D----------KDVD----TV----E--DVIVEVDPTGEVVWEWDFFDHLDPYRDT 251 (477)
T ss_dssp -TTS-EEEEEEETTE-----E-T-S-----------EE-----------S---EEEEE-TTS-EEEEEEGGGTS-TT--T
T ss_pred CCCCCEEEEEeeccc-----ccC-C----------CCcc----Ee----c--CEEEEECCCCCEEEEEehHHhCCccccc
Confidence 999997776553321 000 0 0000 00 1 34778888888888766311 0
Q ss_pred ----------------CceeceEEEEE--eCCEEEEeeCCCCeEEEEeCCC
Q 024436 236 ----------------KMWRSISEVEE--KDGNLWIGSVNMPYAGLYNYSS 268 (268)
Q Consensus 236 ----------------~~~~~~s~~~~--~~g~Lyv~s~~~~~v~~~~~~~ 268 (268)
...-.+.++.. .++.|.+.+...+.|.+|+.++
T Consensus 252 ~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t 302 (477)
T PF05935_consen 252 VLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRT 302 (477)
T ss_dssp TGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TT
T ss_pred ccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCC
Confidence 01111333433 3688999999999999998553
No 201
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=92.28 E-value=9.2 Score=35.21 Aligned_cols=131 Identities=13% Similarity=0.159 Sum_probs=72.8
Q ss_pred CcceEEECCCCCEEEEEeCCCeEEEEe-CCCCeEEEEEE-----------cCCCCCeeEEEeecCCcceEEEEeCCCCeE
Q 024436 35 GPESLAFDALGEGPYTGVSDGRIIKWH-QDQRRWLHFAR-----------TSPNRNHISVILSGDKTGRLMKYDPATKQV 102 (268)
Q Consensus 35 ~P~gia~~~dG~~l~~~~~~g~I~~~~-~~g~~~~~~~~-----------~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~ 102 (268)
.-.++...|.|+.+....+++...--+ .+|..++.... ..|++ ..+..+..++.|-.||.+++..
T Consensus 305 ~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg---Lifgtgt~d~~vkiwdlks~~~ 381 (506)
T KOG0289|consen 305 PVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG---LIFGTGTPDGVVKIWDLKSQTN 381 (506)
T ss_pred cceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCc---eEEeccCCCceEEEEEcCCccc
Confidence 357788888888666665554432212 23333222211 11222 2333556677777777764432
Q ss_pred EEeecCCC-CcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCC-C-CCCceEEcCCCCEEEEE
Q 024436 103 TVLLGNLS-FPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLP-G-FPDNIKRSPRGGFWVGI 172 (268)
Q Consensus 103 ~~~~~~~~-~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~-g-~Pdgia~d~dG~l~va~ 172 (268)
..-..+-. --.-|+|+.+| +-.++....+.|.-||+.- +.....+. ++ . ....+.+|..|.+.+..
T Consensus 382 ~a~Fpght~~vk~i~FsENG-Y~Lat~add~~V~lwDLRK--l~n~kt~~-l~~~~~v~s~~fD~SGt~L~~~ 450 (506)
T KOG0289|consen 382 VAKFPGHTGPVKAISFSENG-YWLATAADDGSVKLWDLRK--LKNFKTIQ-LDEKKEVNSLSFDQSGTYLGIA 450 (506)
T ss_pred cccCCCCCCceeEEEeccCc-eEEEEEecCCeEEEEEehh--hcccceee-ccccccceeEEEcCCCCeEEee
Confidence 21122222 22579999998 5556777778899999862 11222222 21 1 24568999999876655
No 202
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=92.25 E-value=2.1 Score=37.35 Aligned_cols=101 Identities=20% Similarity=0.225 Sum_probs=70.5
Q ss_pred cceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEc------------CCCCCeeEEEeecCCcceEEEEeCCCCeEE
Q 024436 36 PESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFART------------SPNRNHISVILSGDKTGRLMKYDPATKQVT 103 (268)
Q Consensus 36 P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~------------~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~ 103 (268)
-+-+.|+|+|..++++-.|.+|+.|...|.. ..+... ..+.+. ++....+-+|+.+|.++|+..
T Consensus 50 I~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc-eN~~~lkgHsgAVM~l~~~~d~s~---i~S~gtDk~v~~wD~~tG~~~ 125 (338)
T KOG0265|consen 50 IYTIKFHPDGSCFASGGSDRAIVLWNVYGDC-ENFWVLKGHSGAVMELHGMRDGSH---ILSCGTDKTVRGWDAETGKRI 125 (338)
T ss_pred EEEEEECCCCCeEeecCCcceEEEEeccccc-cceeeeccccceeEeeeeccCCCE---EEEecCCceEEEEecccceee
Confidence 4567899999988888889999999865431 111111 111111 234445568889999887653
Q ss_pred -EeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEcc
Q 024436 104 -VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLK 140 (268)
Q Consensus 104 -~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~ 140 (268)
.....-.+-|-+.-+.-|-.|..+.+..+.+..||+.
T Consensus 126 rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R 163 (338)
T KOG0265|consen 126 RKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIR 163 (338)
T ss_pred ehhccccceeeecCccccCCeEEEecCCCceEEEEeec
Confidence 4455667778888777788888888889999999986
No 203
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.22 E-value=3.7 Score=34.32 Aligned_cols=82 Identities=15% Similarity=0.101 Sum_probs=50.8
Q ss_pred CcceEEEEeCCCCeEEE---eecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcC
Q 024436 88 KTGRLMKYDPATKQVTV---LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSP 164 (268)
Q Consensus 88 ~~g~v~~~d~~~~~~~~---~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~ 164 (268)
+...|.++|..+|++.. +...-.|..||.-..| ++|.--+..+.-++||.+. +.....| .-+|.-.|++-|.
T Consensus 66 g~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd--~~y~LTw~egvaf~~d~~t--~~~lg~~-~y~GeGWgLt~d~ 140 (262)
T COG3823 66 GFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGD--YFYQLTWKEGVAFKYDADT--LEELGRF-SYEGEGWGLTSDD 140 (262)
T ss_pred ccceeEEEeccCceEEEEeecCCccccccceeeccc--eEEEEEeccceeEEEChHH--hhhhccc-ccCCcceeeecCC
Confidence 45678888888776543 2223346678887754 7998888888888888764 1111111 1245566777764
Q ss_pred CCCEEEEEecC
Q 024436 165 RGGFWVGIHSR 175 (268)
Q Consensus 165 dG~l~va~~~~ 175 (268)
+ +||.++...
T Consensus 141 ~-~LimsdGsa 150 (262)
T COG3823 141 K-NLIMSDGSA 150 (262)
T ss_pred c-ceEeeCCce
Confidence 3 687766543
No 204
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=92.17 E-value=2.3 Score=42.75 Aligned_cols=97 Identities=15% Similarity=0.205 Sum_probs=59.8
Q ss_pred CcceEEEEeCCCCe-EEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCC--ceeEEEeCCC--CCCceEE
Q 024436 88 KTGRLMKYDPATKQ-VTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAG--TIEIVAQLPG--FPDNIKR 162 (268)
Q Consensus 88 ~~g~v~~~d~~~~~-~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g--~~~~~~~l~g--~Pdgia~ 162 (268)
-.++|..++..+-+ ++++.++...+-|+.|+|-|+++ .+.+..+.|.+|+.....+. -.+.|.+.++ +-.-+.+
T Consensus 149 ~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~-ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSW 227 (942)
T KOG0973|consen 149 LDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYF-ASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSW 227 (942)
T ss_pred ccceEEEEccccceeeeeeecccccccceEECCccCee-eeecCCceEEEEEcccceeeEeeccchhhCCCcceeeeccc
Confidence 34677777776543 45556677788999999999844 67788889999986542111 0122332222 3345778
Q ss_pred cCCCCEEEEEecCC--CcceeeeEe
Q 024436 163 SPRGGFWVGIHSRR--KGISKLVLS 185 (268)
Q Consensus 163 d~dG~l~va~~~~~--~~~~~~v~~ 185 (268)
.|||..+++.+.-+ ...+..|.+
T Consensus 228 SPDG~~las~nA~n~~~~~~~IieR 252 (942)
T KOG0973|consen 228 SPDGHHLASPNAVNGGKSTIAIIER 252 (942)
T ss_pred CCCcCeecchhhccCCcceeEEEec
Confidence 89998776554322 134444444
No 205
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=92.15 E-value=1.5 Score=31.14 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=19.0
Q ss_pred CCCceEEcCCCC-EEEEEecCCC
Q 024436 156 FPDNIKRSPRGG-FWVGIHSRRK 177 (268)
Q Consensus 156 ~Pdgia~d~dG~-l~va~~~~~~ 177 (268)
.|+||+++++++ |||+....+.
T Consensus 55 ~aNGI~~s~~~k~lyVa~~~~~~ 77 (86)
T PF01731_consen 55 FANGIAISPDKKYLYVASSLAHS 77 (86)
T ss_pred CCceEEEcCCCCEEEEEeccCCe
Confidence 699999999986 8999987764
No 206
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=92.08 E-value=1.7 Score=41.22 Aligned_cols=52 Identities=21% Similarity=0.330 Sum_probs=40.3
Q ss_pred CCcceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEcc
Q 024436 87 DKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLK 140 (268)
Q Consensus 87 ~~~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~ 140 (268)
=.+|.|..||...+ ++........|+-++|.|+|. +++..+..+.++-||+.
T Consensus 278 C~DgSiiLyD~~~~-~t~~~ka~~~P~~iaWHp~ga-i~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 278 CEDGSIILYDTTRG-VTLLAKAEFIPTLIAWHPDGA-IFVVGSEQGELQCFDMA 329 (545)
T ss_pred ecCCeEEEEEcCCC-eeeeeeecccceEEEEcCCCc-EEEEEcCCceEEEEEee
Confidence 35688889988744 555555557799999999997 55555678999999986
No 207
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.03 E-value=7.5 Score=33.64 Aligned_cols=185 Identities=13% Similarity=0.008 Sum_probs=93.4
Q ss_pred EEECCC-CCEEEEEeCCCeEEEEeCC-CC-eEEEEEEcCCCC----C-eeEE-EeecCCcceEEEEeCCCCeE-EEe--e
Q 024436 39 LAFDAL-GEGPYTGVSDGRIIKWHQD-QR-RWLHFARTSPNR----N-HISV-ILSGDKTGRLMKYDPATKQV-TVL--L 106 (268)
Q Consensus 39 ia~~~d-G~~l~~~~~~g~I~~~~~~-g~-~~~~~~~~~~~~----~-~~~~-~~~~~~~g~v~~~d~~~~~~-~~~--~ 106 (268)
+.+-+| ..++|.+.+.+++..+++. |+ .|+..- +.| . ...+ +.-+=.+|.+|.++-+||+. -.. .
T Consensus 16 LVV~~dskT~v~igSHs~~~~avd~~sG~~~We~il---g~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~ 92 (354)
T KOG4649|consen 16 LVVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAIL---GVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL 92 (354)
T ss_pred EEEecCCceEEEEecCCceEEEecCCCCcEEeehhh---CceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeeh
Confidence 445554 3455678889999999875 43 232211 111 0 0011 11223457788888887732 211 1
Q ss_pred cCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEe-CCC-CCCceEEcC-CCCEEEEEecCCCcceeee
Q 024436 107 GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-LPG-FPDNIKRSP-RGGFWVGIHSRRKGISKLV 183 (268)
Q Consensus 107 ~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~-l~g-~Pdgia~d~-dG~l~va~~~~~~~~~~~v 183 (268)
+... ---..++|+..+|. .+.++..+..|+... .-++.. .+| .--+-++++ +|.||++...+.- +
T Consensus 93 ~~vk--~~a~~d~~~glIyc-gshd~~~yalD~~~~----~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~v-----l 160 (354)
T KOG4649|consen 93 ETVK--VRAQCDFDGGLIYC-GSHDGNFYALDPKTY----GCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAV-----L 160 (354)
T ss_pred hhhc--cceEEcCCCceEEE-ecCCCcEEEeccccc----ceEEecccCCceeccceecCCCceEEEEeccceE-----E
Confidence 1111 12456778876765 467788888887631 223322 222 233447777 7899999888752 3
Q ss_pred EeeCccc--eeeee--ccccc-eeeeeeccc---cCCCcEEEEEECCCCCEEEEEEcCCCCceec
Q 024436 184 LSFPWIG--NVLIK--LPIDI-VKIHSSLVK---LSGNGGMAMRISEQGNVLEILEEIGRKMWRS 240 (268)
Q Consensus 184 ~~~~~~g--~~l~~--i~~~~-~~~~~~~~~---~~~~~~~~~~~~~~G~~~~~~~~~~g~~~~~ 240 (268)
+..+..+ ..+.. ..-|. .-+.++-.. ..-+ |.+..+++.|+.+..+... |..+.+
T Consensus 161 avt~~~~~~~~~w~~~~~~PiF~splcv~~sv~i~~Vd-G~l~~f~~sG~qvwr~~t~-GpIf~~ 223 (354)
T KOG4649|consen 161 AVTKNPYSSTEFWAATRFGPIFASPLCVGSSVIITTVD-GVLTSFDESGRQVWRPATK-GPIFME 223 (354)
T ss_pred EEccCCCCcceehhhhcCCccccCceeccceEEEEEec-cEEEEEcCCCcEEEeecCC-Cceecc
Confidence 3333333 11111 11110 000111000 1123 5678899999888877653 444443
No 208
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=91.87 E-value=8.2 Score=35.53 Aligned_cols=133 Identities=18% Similarity=0.226 Sum_probs=72.2
Q ss_pred CcceEEECCCCCEEEEEeCCCeEEEEeCCCC-eEEEEEEc---------CCCCCeeEEEeecCCcceEEEEeCCCCe-EE
Q 024436 35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQR-RWLHFART---------SPNRNHISVILSGDKTGRLMKYDPATKQ-VT 103 (268)
Q Consensus 35 ~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~-~~~~~~~~---------~~~~~~~~~~~~~~~~g~v~~~d~~~~~-~~ 103 (268)
.-.+.+|.|||-++.++..|+.|-.|+.... ....|... +.++ |.... ...+++|..||...-+ .+
T Consensus 349 ~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENG-Y~Lat--~add~~V~lwDLRKl~n~k 425 (506)
T KOG0289|consen 349 EYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENG-YWLAT--AADDGSVKLWDLRKLKNFK 425 (506)
T ss_pred eeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCc-eEEEE--EecCCeEEEEEehhhcccc
Confidence 3567899999998888888888888876432 11222111 1111 22222 2344568888875211 11
Q ss_pred Ee-ecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEE
Q 024436 104 VL-LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVG 171 (268)
Q Consensus 104 ~~-~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va 171 (268)
.+ .+.....|.+.|++-|++|-++ ...-+|+.++-....-.....+.+..|..+|+.+...-.+...
T Consensus 426 t~~l~~~~~v~s~~fD~SGt~L~~~-g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s 493 (506)
T KOG0289|consen 426 TIQLDEKKEVNSLSFDQSGTYLGIA-GSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLAS 493 (506)
T ss_pred eeeccccccceeEEEcCCCCeEEee-cceeEEEEEecccccceeeehhhhcccccceeeecccceEEee
Confidence 11 2233346889999999977666 3333444444222111112222333467888888765544433
No 209
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=91.86 E-value=9.2 Score=35.49 Aligned_cols=107 Identities=18% Similarity=0.224 Sum_probs=53.9
Q ss_pred ceEEEEeCCCCeEEEeecCC---CCcceEEE--ccCCCEEEEEecCCcEEEEEEcc-CCCCCceeEEEe-----------
Q 024436 90 GRLMKYDPATKQVTVLLGNL---SFPNGVAL--SEDGNYILLAETTSCRILRYWLK-TSKAGTIEIVAQ----------- 152 (268)
Q Consensus 90 g~v~~~d~~~~~~~~~~~~~---~~pnGia~--spdg~~lyva~~~~~~I~~~~~~-~~~~g~~~~~~~----------- 152 (268)
.++..+|..+++..+..+-. ..|--|.| +|+..+=||.--.+..|++|-.+ ++.- ..+.+++
T Consensus 222 ~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W-~a~kVi~ip~~~v~~~~l 300 (461)
T PF05694_consen 222 HSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEW-AAEKVIDIPAKKVEGWIL 300 (461)
T ss_dssp -EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEE-EEEEEEEE--EE--SS--
T ss_pred CeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCe-eeeEEEECCCcccCcccc
Confidence 47889999888877665432 23444544 46677888888888999998763 3210 1112222
Q ss_pred --C-------CCCCCceEEcCCCC-EEEEEecCCCcceeeeEeeCccceeeeeccc
Q 024436 153 --L-------PGFPDNIKRSPRGG-FWVGIHSRRKGISKLVLSFPWIGNVLIKLPI 198 (268)
Q Consensus 153 --l-------~g~Pdgia~d~dG~-l~va~~~~~~~~~~~v~~~~~~g~~l~~i~~ 198 (268)
+ |+++..|.+..|++ ||+++|..+ .+.+|-...+..=++...+..
T Consensus 301 p~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~G-dvrqYDISDP~~Pkl~gqv~l 355 (461)
T PF05694_consen 301 PEMLKPFGAVPPLITDILISLDDRFLYVSNWLHG-DVRQYDISDPFNPKLVGQVFL 355 (461)
T ss_dssp -GGGGGG-EE------EEE-TTS-EEEEEETTTT-EEEEEE-SSTTS-EEEEEEE-
T ss_pred cccccccccCCCceEeEEEccCCCEEEEEcccCC-cEEEEecCCCCCCcEEeEEEE
Confidence 1 45677888888886 899999887 333332222333344544443
No 210
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.75 E-value=1 Score=40.61 Aligned_cols=105 Identities=17% Similarity=0.190 Sum_probs=66.5
Q ss_pred ecCCcceEEEEeCCCCeEEEe-ecCCCCc-ceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEE
Q 024436 85 SGDKTGRLMKYDPATKQVTVL-LGNLSFP-NGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKR 162 (268)
Q Consensus 85 ~~~~~g~v~~~d~~~~~~~~~-~~~~~~p-nGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~ 162 (268)
+....+.+-.||+..++-.+. .+-...| ..+.+.|+|+++|++++. +.+..||..++.+.. ..+..+.|-+..|..
T Consensus 221 t~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~-g~l~~FD~r~~kl~g-~~~kg~tGsirsih~ 298 (412)
T KOG3881|consen 221 TITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTK-GQLAKFDLRGGKLLG-CGLKGITGSIRSIHC 298 (412)
T ss_pred EEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEeccc-chhheecccCceeec-cccCCccCCcceEEE
Confidence 345678888899885433222 1112222 468899999999999864 778999987643211 112335678999999
Q ss_pred cCCCCEEEEEecCCCcceeeeEeeC-ccceeeeec
Q 024436 163 SPRGGFWVGIHSRRKGISKLVLSFP-WIGNVLIKL 196 (268)
Q Consensus 163 d~dG~l~va~~~~~~~~~~~v~~~~-~~g~~l~~i 196 (268)
++.+.+...+.-. +||..|. .+++++..+
T Consensus 299 hp~~~~las~GLD-----RyvRIhD~ktrkll~kv 328 (412)
T KOG3881|consen 299 HPTHPVLASCGLD-----RYVRIHDIKTRKLLHKV 328 (412)
T ss_pred cCCCceEEeeccc-----eeEEEeecccchhhhhh
Confidence 9988777666443 3466675 344555443
No 211
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=91.74 E-value=5.1 Score=37.53 Aligned_cols=92 Identities=13% Similarity=0.139 Sum_probs=58.1
Q ss_pred CCcceEEEEeCCCCeEEEee-cCCCC-cceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcC
Q 024436 87 DKTGRLMKYDPATKQVTVLL-GNLSF-PNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSP 164 (268)
Q Consensus 87 ~~~g~v~~~d~~~~~~~~~~-~~~~~-pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~ 164 (268)
..+|.|..||..+.....-+ +.-.. ..||+|+|-...|+|+-....+|+.||....... .....+-| -.-+++.+
T Consensus 184 sd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~-~~l~y~~P--lstvaf~~ 260 (673)
T KOG4378|consen 184 SDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAST-DRLTYSHP--LSTVAFSE 260 (673)
T ss_pred ccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccccc-ceeeecCC--cceeeecC
Confidence 34577777777632222111 22223 4699999998899999999999999998632211 11222222 24688999
Q ss_pred CCCEEEEEecCCCcceee
Q 024436 165 RGGFWVGIHSRRKGISKL 182 (268)
Q Consensus 165 dG~l~va~~~~~~~~~~~ 182 (268)
+|.++++....+ +++.|
T Consensus 261 ~G~~L~aG~s~G-~~i~Y 277 (673)
T KOG4378|consen 261 CGTYLCAGNSKG-ELIAY 277 (673)
T ss_pred CceEEEeecCCc-eEEEE
Confidence 998777776665 54444
No 212
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=91.70 E-value=8.2 Score=33.42 Aligned_cols=137 Identities=14% Similarity=0.142 Sum_probs=76.4
Q ss_pred CCcceEEECCC-CCEEEEEeCCCeEEEEeCC-CCeEEEEEE-------------cCCCCCeeEEEeecCCcceEEEEeCC
Q 024436 34 IGPESLAFDAL-GEGPYTGVSDGRIIKWHQD-QRRWLHFAR-------------TSPNRNHISVILSGDKTGRLMKYDPA 98 (268)
Q Consensus 34 ~~P~gia~~~d-G~~l~~~~~~g~I~~~~~~-g~~~~~~~~-------------~~~~~~~~~~~~~~~~~g~v~~~d~~ 98 (268)
..-..+|+.|- |.++++...+..|..++.. +..|.-... -+|.++|+.. ......+..+...
T Consensus 15 ~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~---aSFD~t~~Iw~k~ 91 (312)
T KOG0645|consen 15 DRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLAS---ASFDATVVIWKKE 91 (312)
T ss_pred CcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEE---eeccceEEEeecC
Confidence 35788999998 8888887778887777766 333322211 1233333321 1222233333222
Q ss_pred CCeEEEe---ecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCC---CCCCceEEcCCCCEEEEE
Q 024436 99 TKQVTVL---LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLP---GFPDNIKRSPRGGFWVGI 172 (268)
Q Consensus 99 ~~~~~~~---~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~---g~Pdgia~d~dG~l~va~ 172 (268)
.++.+.+ .++-..--+++|+++|++| .+-+....||.|.++.+ .+.+...-|. .-.-.+.+.|.-.|++++
T Consensus 92 ~~efecv~~lEGHEnEVK~Vaws~sG~~L-ATCSRDKSVWiWe~ded--dEfec~aVL~~HtqDVK~V~WHPt~dlL~S~ 168 (312)
T KOG0645|consen 92 DGEFECVATLEGHENEVKCVAWSASGNYL-ATCSRDKSVWIWEIDED--DEFECIAVLQEHTQDVKHVIWHPTEDLLFSC 168 (312)
T ss_pred CCceeEEeeeeccccceeEEEEcCCCCEE-EEeeCCCeEEEEEecCC--CcEEEEeeeccccccccEEEEcCCcceeEEe
Confidence 2444332 2333445689999999855 45566789999998832 1222222221 235578888865565555
Q ss_pred ecCC
Q 024436 173 HSRR 176 (268)
Q Consensus 173 ~~~~ 176 (268)
...+
T Consensus 169 SYDn 172 (312)
T KOG0645|consen 169 SYDN 172 (312)
T ss_pred ccCC
Confidence 4443
No 213
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=91.65 E-value=3.2 Score=37.46 Aligned_cols=103 Identities=21% Similarity=0.309 Sum_probs=56.4
Q ss_pred CcceEEECCCCCEEEEEeCCCeEEEEeCCCCe--EEEE-EEcCCCCCeeEE-------EeecCCcceEEEEeC---CCCe
Q 024436 35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRR--WLHF-ARTSPNRNHISV-------ILSGDKTGRLMKYDP---ATKQ 101 (268)
Q Consensus 35 ~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~--~~~~-~~~~~~~~~~~~-------~~~~~~~g~v~~~d~---~~~~ 101 (268)
.+..+...++|+++++.....+.+.++-.++. +.-. ....+.++.... ..-..+.|.+|.+|- ..+.
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 56777888899988888877665444322211 1111 001111111000 001123344444432 2255
Q ss_pred EEEeecCCCCcceEEEccCCCEEEEEecCCc-EEEEE
Q 024436 102 VTVLLGNLSFPNGVALSEDGNYILLAETTSC-RILRY 137 (268)
Q Consensus 102 ~~~~~~~~~~pnGia~spdg~~lyva~~~~~-~I~~~ 137 (268)
.+....++.+-..++++||+++|..+|...+ ||.+|
T Consensus 144 ~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~y 180 (390)
T KOG3914|consen 144 CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRY 180 (390)
T ss_pred cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEec
Confidence 5566677788889999999999988887644 44444
No 214
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=91.62 E-value=5 Score=36.00 Aligned_cols=105 Identities=21% Similarity=0.263 Sum_probs=64.9
Q ss_pred cceEEECCCCCEEEEEeCCCeEEEEeCCCC---e--------E--EEEEEc---------CCCCCeeEEEeecCCcceEE
Q 024436 36 PESLAFDALGEGPYTGVSDGRIIKWHQDQR---R--------W--LHFART---------SPNRNHISVILSGDKTGRLM 93 (268)
Q Consensus 36 P~gia~~~dG~~l~~~~~~g~I~~~~~~g~---~--------~--~~~~~~---------~~~~~~~~~~~~~~~~g~v~ 93 (268)
-.-+++..||.++.+..++.++..|-...+ . + ..++.. .+..+-+.....+..++.|-
T Consensus 238 vr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk 317 (406)
T KOG0295|consen 238 VRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIK 317 (406)
T ss_pred EEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEE
Confidence 346788899998877777877777654322 0 0 011111 01111111122334455666
Q ss_pred EEeCCCCeE-EEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccC
Q 024436 94 KYDPATKQV-TVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT 141 (268)
Q Consensus 94 ~~d~~~~~~-~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~ 141 (268)
.+|-.++.. -.+.....+-.|++|+|.|++|+ +-..+..+.+|++..
T Consensus 318 ~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~-ScaDDktlrvwdl~~ 365 (406)
T KOG0295|consen 318 IWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYIL-SCADDKTLRVWDLKN 365 (406)
T ss_pred EEeccCCeEEEEEecccceeeeeEEcCCCeEEE-EEecCCcEEEEEecc
Confidence 667666754 34567778889999999999775 556788999999875
No 215
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=91.35 E-value=3.8 Score=37.38 Aligned_cols=85 Identities=22% Similarity=0.187 Sum_probs=48.2
Q ss_pred CCcceEEEEeCCCCeEEEeecCCC-CcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCC-CC--CceEE
Q 024436 87 DKTGRLMKYDPATKQVTVLLGNLS-FPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPG-FP--DNIKR 162 (268)
Q Consensus 87 ~~~g~v~~~d~~~~~~~~~~~~~~-~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g-~P--dgia~ 162 (268)
.....+|.+|.++++++++.++-. ...|..++|+.+.+|... ..++|+++++++. +.+.+.++|. .- .....
T Consensus 57 dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~-~~~~l~~vdL~T~---e~~~vy~~p~~~~g~gt~v~ 132 (386)
T PF14583_consen 57 DGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVK-NGRSLRRVDLDTL---EERVVYEVPDDWKGYGTWVA 132 (386)
T ss_dssp TSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEE-TTTEEEEEETTT-----EEEEEE--TTEEEEEEEEE
T ss_pred CCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEE-CCCeEEEEECCcC---cEEEEEECCcccccccceee
Confidence 345689999999999999987542 233888999999886543 3478999999863 2344445431 11 12334
Q ss_pred cCCCCEEEEEecC
Q 024436 163 SPRGGFWVGIHSR 175 (268)
Q Consensus 163 d~dG~l~va~~~~ 175 (268)
++|+.++++....
T Consensus 133 n~d~t~~~g~e~~ 145 (386)
T PF14583_consen 133 NSDCTKLVGIEIS 145 (386)
T ss_dssp -TTSSEEEEEEEE
T ss_pred CCCccEEEEEEEe
Confidence 7788887776543
No 216
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=91.33 E-value=5.2 Score=35.99 Aligned_cols=88 Identities=18% Similarity=0.113 Sum_probs=57.8
Q ss_pred eecCCcceEEEEeCCCCeEEEeecCCCCc-ceEEEccCCCEEEEEecC----CcEEEEEEcc-CCCCCceeEEEeCCCCC
Q 024436 84 LSGDKTGRLMKYDPATKQVTVLLGNLSFP-NGVALSEDGNYILLAETT----SCRILRYWLK-TSKAGTIEIVAQLPGFP 157 (268)
Q Consensus 84 ~~~~~~g~v~~~d~~~~~~~~~~~~~~~p-nGia~spdg~~lyva~~~----~~~I~~~~~~-~~~~g~~~~~~~l~g~P 157 (268)
.+..+...|+.++.+++..+.+..+-..- .=+.++++++.||++... ...|++.+++ ++ ..+.+... ...
T Consensus 254 s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~---~~~~LT~~-~~~ 329 (353)
T PF00930_consen 254 SERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGG---EPKCLTCE-DGD 329 (353)
T ss_dssp EETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETT---EEEESSTT-SST
T ss_pred EEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCC---CeEeccCC-CCC
Confidence 34456678999999977767665443333 347889999999998765 4589999988 42 23322222 234
Q ss_pred C-ceEEcCCCCEEEEEecC
Q 024436 158 D-NIKRSPRGGFWVGIHSR 175 (268)
Q Consensus 158 d-gia~d~dG~l~va~~~~ 175 (268)
. .+.++++|+.++-.+.+
T Consensus 330 ~~~~~~Spdg~y~v~~~s~ 348 (353)
T PF00930_consen 330 HYSASFSPDGKYYVDTYSG 348 (353)
T ss_dssp TEEEEE-TTSSEEEEEEES
T ss_pred ceEEEECCCCCEEEEEEcC
Confidence 4 79999999987755543
No 217
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=91.04 E-value=13 Score=35.04 Aligned_cols=103 Identities=15% Similarity=0.132 Sum_probs=61.9
Q ss_pred CcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEE------------cCCCCCeeEEEeecCCcceEEEEeCCCCeE
Q 024436 35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFAR------------TSPNRNHISVILSGDKTGRLMKYDPATKQV 102 (268)
Q Consensus 35 ~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~------------~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~ 102 (268)
.-+.--+.|||+.+.++-..-.+..||........-+. .+++.+. .+..-..|.|..||..+..+
T Consensus 467 yiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakv---cFsccsdGnI~vwDLhnq~~ 543 (705)
T KOG0639|consen 467 YIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKV---CFSCCSDGNIAVWDLHNQTL 543 (705)
T ss_pred ceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccce---eeeeccCCcEEEEEccccee
Confidence 34455667777777776655566666644321111111 1122221 23334567788888765433
Q ss_pred -EEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccC
Q 024436 103 -TVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT 141 (268)
Q Consensus 103 -~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~ 141 (268)
+.+...-.....|.+++||..|| +....++|..||+..
T Consensus 544 VrqfqGhtDGascIdis~dGtklW-TGGlDntvRcWDlre 582 (705)
T KOG0639|consen 544 VRQFQGHTDGASCIDISKDGTKLW-TGGLDNTVRCWDLRE 582 (705)
T ss_pred eecccCCCCCceeEEecCCCceee-cCCCccceeehhhhh
Confidence 34444455677899999998776 777889999999863
No 218
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=91.03 E-value=9.2 Score=33.75 Aligned_cols=30 Identities=17% Similarity=0.102 Sum_probs=21.9
Q ss_pred cceEEECCCCCEEEEEeCCCeEEEEeC-CCC
Q 024436 36 PESLAFDALGEGPYTGVSDGRIIKWHQ-DQR 65 (268)
Q Consensus 36 P~gia~~~dG~~l~~~~~~g~I~~~~~-~g~ 65 (268)
.+++...++|+++++..+...|++|++ +|+
T Consensus 146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~ 176 (299)
T PF14269_consen 146 INSVDKDDDGDYLISSRNTSTIYKIDPSTGK 176 (299)
T ss_pred eeeeeecCCccEEEEecccCEEEEEECCCCc
Confidence 356677888887777777788888885 444
No 219
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=91.03 E-value=12 Score=36.39 Aligned_cols=134 Identities=17% Similarity=0.164 Sum_probs=77.3
Q ss_pred CcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcCCC-CC--ee--EEEeecCCcceEEEEeCCCCeEEEeecCC
Q 024436 35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPN-RN--HI--SVILSGDKTGRLMKYDPATKQVTVLLGNL 109 (268)
Q Consensus 35 ~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~~-~~--~~--~~~~~~~~~g~v~~~d~~~~~~~~~~~~~ 109 (268)
.-..++.-|++. ++++..|..|..|..+ +....|.....- |. .+ ..+++...+|.|.+++.++..+.+...+-
T Consensus 142 sVWAv~~l~e~~-~vTgsaDKtIklWk~~-~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~ge~l~~~~ght 219 (745)
T KOG0301|consen 142 SVWAVASLPENT-YVTGSADKTIKLWKGG-TLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLDGEVLLEMHGHT 219 (745)
T ss_pred heeeeeecCCCc-EEeccCcceeeeccCC-chhhhhccchhheeeeEEecCCCeEeecCCceEEEEeccCceeeeeeccc
Confidence 455677777774 7888877777666543 322222111000 00 00 12345567788989988755566667777
Q ss_pred CCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCC-CCCceEEcCCCCEEEEEecCC
Q 024436 110 SFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPG-FPDNIKRSPRGGFWVGIHSRR 176 (268)
Q Consensus 110 ~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g-~Pdgia~d~dG~l~va~~~~~ 176 (268)
.+-..|....+++ ++|+-..++++..|+.+ +.....++|+ --....+=++|.+++++..+.
T Consensus 220 n~vYsis~~~~~~-~Ivs~gEDrtlriW~~~-----e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~ 281 (745)
T KOG0301|consen 220 NFVYSISMALSDG-LIVSTGEDRTLRIWKKD-----ECVQVITLPTTSIWSAKVLLNGDIVVGGSDGR 281 (745)
T ss_pred eEEEEEEecCCCC-eEEEecCCceEEEeecC-----ceEEEEecCccceEEEEEeeCCCEEEeccCce
Confidence 7777888555554 77787777888888754 2233334553 122333445666666666654
No 220
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=90.92 E-value=2.6 Score=38.85 Aligned_cols=94 Identities=18% Similarity=0.241 Sum_probs=58.6
Q ss_pred EEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcCCCCCeeEEEeecCCcceEEEEeCCCCeEEEee
Q 024436 27 QYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRNHISVILSGDKTGRLMKYDPATKQVTVLL 106 (268)
Q Consensus 27 ~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~ 106 (268)
.+..|. .+.++++||.++.+|++..+|.|+.+...+.. ++ ...-..+.+. ..+-++..+.
T Consensus 213 ti~fp~--si~av~lDpae~~~yiGt~~G~I~~~~~~~~~--~~--------------~~~v~~k~~~--~~~t~~~~~~ 272 (476)
T KOG0646|consen 213 TITFPS--SIKAVALDPAERVVYIGTEEGKIFQNLLFKLS--GQ--------------SAGVNQKGRH--EENTQINVLV 272 (476)
T ss_pred EEecCC--cceeEEEcccccEEEecCCcceEEeeehhcCC--cc--------------cccccccccc--cccceeeeec
Confidence 334443 68889999999999999999999776543210 00 0000011111 2212344444
Q ss_pred cCCC--CcceEEEccCCCEEEEEecCCcEEEEEEccC
Q 024436 107 GNLS--FPNGVALSEDGNYILLAETTSCRILRYWLKT 141 (268)
Q Consensus 107 ~~~~--~pnGia~spdg~~lyva~~~~~~I~~~~~~~ 141 (268)
++.. .-..++++-||. |.++....+++.+||+..
T Consensus 273 Gh~~~~~ITcLais~Dgt-lLlSGd~dg~VcvWdi~S 308 (476)
T KOG0646|consen 273 GHENESAITCLAISTDGT-LLLSGDEDGKVCVWDIYS 308 (476)
T ss_pred cccCCcceeEEEEecCcc-EEEeeCCCCCEEEEecch
Confidence 4333 456899999995 778888899999999864
No 221
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=90.89 E-value=3.6 Score=40.09 Aligned_cols=124 Identities=17% Similarity=0.208 Sum_probs=67.7
Q ss_pred CcceEEECCCCCEEEEEeCCCeEEEEeC-CCCeEEEEE-----------EcCCCCCeeEEEeecCCcceEEEEeCCCCeE
Q 024436 35 GPESLAFDALGEGPYTGVSDGRIIKWHQ-DQRRWLHFA-----------RTSPNRNHISVILSGDKTGRLMKYDPATKQV 102 (268)
Q Consensus 35 ~P~gia~~~dG~~l~~~~~~g~I~~~~~-~g~~~~~~~-----------~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~ 102 (268)
+| ++++++|+.+||.+++ +|..++. ++.....+. ...+++.++... ....-+-.|+..++++
T Consensus 23 G~--~~~s~nG~~L~t~~~d-~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~~L~~a---~rs~llrv~~L~tgk~ 96 (775)
T KOG0319|consen 23 GP--VAWSSNGQHLYTACGD-RVIIIDVATGSIALPSGSNEDEDEITALALTPDEEVLVTA---SRSQLLRVWSLPTGKL 96 (775)
T ss_pred Cc--eeECCCCCEEEEecCc-eEEEEEccCCceecccCCccchhhhheeeecCCccEEEEe---eccceEEEEEcccchH
Confidence 46 8999999999997654 3433443 222101111 112333322211 1222233344455555
Q ss_pred EEeecC-CCCc-ceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCC
Q 024436 103 TVLLGN-LSFP-NGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG 167 (268)
Q Consensus 103 ~~~~~~-~~~p-nGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~ 167 (268)
...+.. -..| -.++|+|-| .|..+....+++.+|+++++.. ...|...||...-+.+.++=+
T Consensus 97 irswKa~He~Pvi~ma~~~~g-~LlAtggaD~~v~VWdi~~~~~--th~fkG~gGvVssl~F~~~~~ 160 (775)
T KOG0319|consen 97 IRSWKAIHEAPVITMAFDPTG-TLLATGGADGRVKVWDIKNGYC--THSFKGHGGVVSSLLFHPHWN 160 (775)
T ss_pred hHhHhhccCCCeEEEEEcCCC-ceEEeccccceEEEEEeeCCEE--EEEecCCCceEEEEEeCCccc
Confidence 444433 2334 479999999 5877888889999999986432 123344455555555655543
No 222
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=90.88 E-value=13 Score=34.32 Aligned_cols=50 Identities=24% Similarity=0.317 Sum_probs=34.3
Q ss_pred CCcceEEEEeCCCCeEEEee-cCCCCcceEEEccCCCEEEEEecCCcEEEEEEccC
Q 024436 87 DKTGRLMKYDPATKQVTVLL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT 141 (268)
Q Consensus 87 ~~~g~v~~~d~~~~~~~~~~-~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~ 141 (268)
+.+-++|++ |+ +.+.+. .+-..+..++|-.|. =||+.+.++.|.-|.+..
T Consensus 307 DrT~rlwKi-~e--esqlifrg~~~sidcv~~In~~--HfvsGSdnG~IaLWs~~K 357 (479)
T KOG0299|consen 307 DRTVRLWKI-PE--ESQLIFRGGEGSIDCVAFINDE--HFVSGSDNGSIALWSLLK 357 (479)
T ss_pred cceeEEEec-cc--cceeeeeCCCCCeeeEEEeccc--ceeeccCCceEEEeeecc
Confidence 455677777 33 233333 334478889998775 357999999999999863
No 223
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=90.83 E-value=0.25 Score=29.26 Aligned_cols=21 Identities=14% Similarity=0.278 Sum_probs=18.2
Q ss_pred CCCceEEcCCCCEEEEEecCC
Q 024436 156 FPDNIKRSPRGGFWVGIHSRR 176 (268)
Q Consensus 156 ~Pdgia~d~dG~l~va~~~~~ 176 (268)
.|.+|++|++|++||+.....
T Consensus 14 ~~~~IavD~~GNiYv~G~T~~ 34 (38)
T PF06739_consen 14 YGNGIAVDSNGNIYVTGYTNG 34 (38)
T ss_pred eEEEEEECCCCCEEEEEeecC
Confidence 488999999999999987654
No 224
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=90.25 E-value=11 Score=32.56 Aligned_cols=141 Identities=14% Similarity=0.182 Sum_probs=79.9
Q ss_pred cceEEECCCCCEEEEEeCCCeEEEE-eCCCCeEEEEEEcCCCCCe-------eEEEeecCCcceEEEEeCCCCeEEEeec
Q 024436 36 PESLAFDALGEGPYTGVSDGRIIKW-HQDQRRWLHFARTSPNRNH-------ISVILSGDKTGRLMKYDPATKQVTVLLG 107 (268)
Q Consensus 36 P~gia~~~dG~~l~~~~~~g~I~~~-~~~g~~~~~~~~~~~~~~~-------~~~~~~~~~~g~v~~~d~~~~~~~~~~~ 107 (268)
-.-|-+..+|+++++...|...-.| ..+|+++-.+....+ .-| -..++++..+..+..||-.+|+....++
T Consensus 13 lTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtG-avW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k 91 (327)
T KOG0643|consen 13 LTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTG-AVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK 91 (327)
T ss_pred cceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCc-eEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEee
Confidence 3456788999998887766555554 346664322211100 000 0112344555556666666777666565
Q ss_pred CCCCcceEEEccCCCEEEEE-ec---CCcEEEEEEccCC--CCCceeEEEeCC---CCCCceEEcCCCCEEEEEecCCC
Q 024436 108 NLSFPNGVALSEDGNYILLA-ET---TSCRILRYWLKTS--KAGTIEIVAQLP---GFPDNIKRSPRGGFWVGIHSRRK 177 (268)
Q Consensus 108 ~~~~pnGia~spdg~~lyva-~~---~~~~I~~~~~~~~--~~g~~~~~~~l~---g~Pdgia~d~dG~l~va~~~~~~ 177 (268)
-.....++.|+++|+.+.++ |- ....|..|++... .....+++..++ .-+.-.-+++-|..+++.+..+.
T Consensus 92 ~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~ 170 (327)
T KOG0643|consen 92 TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGS 170 (327)
T ss_pred cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCc
Confidence 55555789999999755443 22 3357888888632 111223233222 23556677788888888777764
No 225
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=89.85 E-value=1.8 Score=24.88 Aligned_cols=34 Identities=26% Similarity=0.346 Sum_probs=25.4
Q ss_pred EeecCCCCcceEEEccCCCEEEEEecCCcEEEEEE
Q 024436 104 VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYW 138 (268)
Q Consensus 104 ~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~ 138 (268)
.+.......+.|+++|+++.| ++-+.++.|..|+
T Consensus 6 ~~~~h~~~i~~i~~~~~~~~~-~s~~~D~~i~vwd 39 (39)
T PF00400_consen 6 TFRGHSSSINSIAWSPDGNFL-ASGSSDGTIRVWD 39 (39)
T ss_dssp EEESSSSSEEEEEEETTSSEE-EEEETTSEEEEEE
T ss_pred EEcCCCCcEEEEEEecccccc-eeeCCCCEEEEEC
Confidence 344555677899999998755 5666778888885
No 226
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=89.31 E-value=20 Score=34.03 Aligned_cols=54 Identities=17% Similarity=0.146 Sum_probs=36.3
Q ss_pred ecCCcceEEEEeCCCCeEEEee-cCCCCcceEEEccCCCEEEEEecCCcEEEEEEccC
Q 024436 85 SGDKTGRLMKYDPATKQVTVLL-GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT 141 (268)
Q Consensus 85 ~~~~~g~v~~~d~~~~~~~~~~-~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~ 141 (268)
+.....++..+++..+.+...+ .+-..+..++++|||+.|.++. +.|.+|++..
T Consensus 119 S~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as---~~ik~~~~~~ 173 (541)
T KOG4547|consen 119 SVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS---RQIKVLDIET 173 (541)
T ss_pred ecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc---ceEEEEEccC
Confidence 3344556666666655444333 3445677899999999776553 7899999875
No 227
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=89.01 E-value=1.9 Score=24.69 Aligned_cols=36 Identities=28% Similarity=0.394 Sum_probs=28.1
Q ss_pred EEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEe
Q 024436 25 VVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWH 61 (268)
Q Consensus 25 ~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~ 61 (268)
++++.-. .....++++.|+++.++++..|+.|..++
T Consensus 4 ~~~~~~h-~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 4 VRTFRGH-SSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEESS-SSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEcCC-CCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 3444444 35789999999999999999999997664
No 228
>PHA02713 hypothetical protein; Provisional
Probab=88.75 E-value=24 Score=34.07 Aligned_cols=84 Identities=15% Similarity=0.179 Sum_probs=44.5
Q ss_pred CCCCEEEEEeC------CCeEEEEeCCCCeEEEEEEcCCCC---------CeeEEEeecC---CcceEEEEeCCCCeEEE
Q 024436 43 ALGEGPYTGVS------DGRIIKWHQDQRRWLHFARTSPNR---------NHISVILSGD---KTGRLMKYDPATKQVTV 104 (268)
Q Consensus 43 ~dG~~l~~~~~------~g~I~~~~~~g~~~~~~~~~~~~~---------~~~~~~~~~~---~~g~v~~~d~~~~~~~~ 104 (268)
-++.+|+++-. ...+.++++..+.|...+.....| ..++.+.... ....+.+|||.+.+++.
T Consensus 302 l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~ 381 (557)
T PHA02713 302 VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKM 381 (557)
T ss_pred ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEE
Confidence 36666665432 145778888777776554332222 1222221111 12458899999888876
Q ss_pred eecCCCCc---ceEEEccCCCEEEEEec
Q 024436 105 LLGNLSFP---NGVALSEDGNYILLAET 129 (268)
Q Consensus 105 ~~~~~~~p---nGia~spdg~~lyva~~ 129 (268)
+.. +..| .+++.. +| .|||...
T Consensus 382 ~~~-mp~~r~~~~~~~~-~g-~IYviGG 406 (557)
T PHA02713 382 LPD-MPIALSSYGMCVL-DQ-YIYIIGG 406 (557)
T ss_pred CCC-CCcccccccEEEE-CC-EEEEEeC
Confidence 543 2222 133332 55 6999754
No 229
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=88.71 E-value=14 Score=31.58 Aligned_cols=102 Identities=15% Similarity=0.074 Sum_probs=57.1
Q ss_pred EECCCCCEEEEEeCCCeEEEEeCC----------CCeEEEEEEcCCCCC-e----eEEEeecCCcceEEEEeCCCC----
Q 024436 40 AFDALGEGPYTGVSDGRIIKWHQD----------QRRWLHFARTSPNRN-H----ISVILSGDKTGRLMKYDPATK---- 100 (268)
Q Consensus 40 a~~~dG~~l~~~~~~g~I~~~~~~----------g~~~~~~~~~~~~~~-~----~~~~~~~~~~g~v~~~d~~~~---- 100 (268)
|++|-++++++++..|.|..++.+ |+. ..++.-.-+++ | -.+++-..+.|.|+-+....-
T Consensus 17 a~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~-~iv~eqahdgpiy~~~f~d~~Lls~gdG~V~gw~W~E~~es~ 95 (325)
T KOG0649|consen 17 AISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKL-KIVPEQAHDGPIYYLAFHDDFLLSGGDGLVYGWEWNEEEESL 95 (325)
T ss_pred hhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCc-ceeeccccCCCeeeeeeehhheeeccCceEEEeeehhhhhhc
Confidence 577888888888888888766532 111 11111111111 1 112222234577766544310
Q ss_pred eEEEee----------cCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCC
Q 024436 101 QVTVLL----------GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSK 143 (268)
Q Consensus 101 ~~~~~~----------~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~ 143 (268)
..+.++ -..+--|.+-++|..+.++.+. +.+.++.+|+++++
T Consensus 96 ~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag-GD~~~y~~dlE~G~ 147 (325)
T KOG0649|consen 96 ATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG-GDGVIYQVDLEDGR 147 (325)
T ss_pred cchhhhhhcCccccCcccCCccceeEeccCCCcEEEec-CCeEEEEEEecCCE
Confidence 011111 1223448999999988898887 77899999998643
No 230
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=88.25 E-value=26 Score=33.95 Aligned_cols=145 Identities=17% Similarity=0.142 Sum_probs=76.2
Q ss_pred ceEEECCCCCEEEEEeCC------CeEEEEeCCCCeEEEEEEcCCCCC---------eeEEEeec---CCcceEEEEeCC
Q 024436 37 ESLAFDALGEGPYTGVSD------GRIIKWHQDQRRWLHFARTSPNRN---------HISVILSG---DKTGRLMKYDPA 98 (268)
Q Consensus 37 ~gia~~~dG~~l~~~~~~------g~I~~~~~~g~~~~~~~~~~~~~~---------~~~~~~~~---~~~g~v~~~d~~ 98 (268)
.++++. +|.+|+++-.+ ..+.++++....|...+.....|. .++.+... ..-..+-+|||.
T Consensus 326 ~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~ 404 (571)
T KOG4441|consen 326 VGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPV 404 (571)
T ss_pred ccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCC
Confidence 334433 45666664333 567788888877877654433331 22222111 122368899999
Q ss_pred CCeEEEeecCCC--CcceEEEccCCCEEEEEecCC------cEEEEEEccCCCCCceeEEEeCC--CCCCceEEcCCCCE
Q 024436 99 TKQVTVLLGNLS--FPNGVALSEDGNYILLAETTS------CRILRYWLKTSKAGTIEIVAQLP--GFPDNIKRSPRGGF 168 (268)
Q Consensus 99 ~~~~~~~~~~~~--~pnGia~spdg~~lyva~~~~------~~I~~~~~~~~~~g~~~~~~~l~--g~Pdgia~d~dG~l 168 (268)
+.+++.+..-.. .-.|++.- +| .||+..... ..+.+||+... ..+.....+ -.-.|+++- +|.|
T Consensus 405 ~~~W~~va~m~~~r~~~gv~~~-~g-~iYi~GG~~~~~~~l~sve~YDP~t~---~W~~~~~M~~~R~~~g~a~~-~~~i 478 (571)
T KOG4441|consen 405 TNKWTPVAPMLTRRSGHGVAVL-GG-KLYIIGGGDGSSNCLNSVECYDPETN---TWTLIAPMNTRRSGFGVAVL-NGKI 478 (571)
T ss_pred CCcccccCCCCcceeeeEEEEE-CC-EEEEEcCcCCCccccceEEEEcCCCC---ceeecCCcccccccceEEEE-CCEE
Confidence 888877664332 22344443 45 699986522 46788887642 222222221 112355554 5788
Q ss_pred EEEEecCCCcceeeeEeeCc
Q 024436 169 WVGIHSRRKGISKLVLSFPW 188 (268)
Q Consensus 169 ~va~~~~~~~~~~~v~~~~~ 188 (268)
|+.....+...++-+.+|.+
T Consensus 479 YvvGG~~~~~~~~~VE~ydp 498 (571)
T KOG4441|consen 479 YVVGGFDGTSALSSVERYDP 498 (571)
T ss_pred EEECCccCCCccceEEEEcC
Confidence 88554332222333444544
No 231
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=87.85 E-value=2.4 Score=38.58 Aligned_cols=116 Identities=20% Similarity=0.224 Sum_probs=70.1
Q ss_pred CEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCC-CCeEEEEEEcCCC------CCeeEEEeecCCcceEEEEe
Q 024436 24 GVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQD-QRRWLHFARTSPN------RNHISVILSGDKTGRLMKYD 96 (268)
Q Consensus 24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~-g~~~~~~~~~~~~------~~~~~~~~~~~~~g~v~~~d 96 (268)
.|..+.......-+++||+|....+++..+||+|..|+-- .+.-..+...+-+ .+....+..+.++.-|-.+|
T Consensus 171 nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWD 250 (464)
T KOG0284|consen 171 NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWD 250 (464)
T ss_pred hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeec
Confidence 3333333333467899999988878888889999888642 1110111111000 01223344445555777899
Q ss_pred CCCCeEE-EeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEcc
Q 024436 97 PATKQVT-VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLK 140 (268)
Q Consensus 97 ~~~~~~~-~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~ 140 (268)
|++|+.. .+...-..--++.|.|++.+| .+-+..+.+.+||+.
T Consensus 251 prSg~cl~tlh~HKntVl~~~f~~n~N~L-lt~skD~~~kv~DiR 294 (464)
T KOG0284|consen 251 PRSGSCLATLHGHKNTVLAVKFNPNGNWL-LTGSKDQSCKVFDIR 294 (464)
T ss_pred CCCcchhhhhhhccceEEEEEEcCCCCee-EEccCCceEEEEehh
Confidence 9877532 223333344578999999755 577777889999986
No 232
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=87.35 E-value=22 Score=32.13 Aligned_cols=147 Identities=10% Similarity=0.085 Sum_probs=78.1
Q ss_pred CEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcCC----CCCeeEEEeecCCcceEEEEeCCC
Q 024436 24 GVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSP----NRNHISVILSGDKTGRLMKYDPAT 99 (268)
Q Consensus 24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~g~v~~~d~~~ 99 (268)
++.++.-.. .--.||+++. +.++.+ -.|..|-+|..+|.....+...+. +..+....+. .+...|-.||..-
T Consensus 101 ~~~~f~AH~-G~V~Gi~v~~-~~~~tv-gdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~Fa-TcGe~i~IWD~~R 176 (433)
T KOG0268|consen 101 CIRTFKAHE-GLVRGICVTQ-TSFFTV-GDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFA-TCGEQIDIWDEQR 176 (433)
T ss_pred hhheeeccc-CceeeEEecc-cceEEe-cCCcceeeeeccCCcceeeecccccccccccccccccc-ccCceeeeccccc
Confidence 455555442 2467888887 443444 345556555544432222221110 0001111111 1112233444321
Q ss_pred -CeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEecCCC
Q 024436 100 -KQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRK 177 (268)
Q Consensus 100 -~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~~~~ 177 (268)
.-++.+.-+...-..+-|+|-...|..+....+.|..||+..... -..+... -.+++|++.|++-.+++.....+
T Consensus 177 ~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~P-l~KVi~~--mRTN~IswnPeafnF~~a~ED~n 252 (433)
T KOG0268|consen 177 DNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASP-LKKVILT--MRTNTICWNPEAFNFVAANEDHN 252 (433)
T ss_pred CCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCc-cceeeee--ccccceecCccccceeecccccc
Confidence 123333333333467999999988888877889999999874321 1122222 36899999998878888777764
No 233
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=87.16 E-value=3.3 Score=24.23 Aligned_cols=31 Identities=29% Similarity=0.358 Sum_probs=18.5
Q ss_pred CcceEEEEeCCCCeEEEeecCCCCcceEEEc
Q 024436 88 KTGRLMKYDPATKQVTVLLGNLSFPNGVALS 118 (268)
Q Consensus 88 ~~g~v~~~d~~~~~~~~~~~~~~~pnGia~s 118 (268)
..++|..+|+.+++...-......|.+|+|+
T Consensus 12 ~~~~v~~id~~~~~~~~~i~vg~~P~~i~~~ 42 (42)
T TIGR02276 12 GSNTVSVIDTATNKVIATIPVGGYPFGVAVS 42 (42)
T ss_pred CCCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence 4456666666655554444445667777764
No 234
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=86.94 E-value=19 Score=30.86 Aligned_cols=80 Identities=19% Similarity=0.148 Sum_probs=48.6
Q ss_pred ceEEEEeCCCCeEEEeecCC----CCcceEEEccCCCEEEEEe--cCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEc
Q 024436 90 GRLMKYDPATKQVTVLLGNL----SFPNGVALSEDGNYILLAE--TTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRS 163 (268)
Q Consensus 90 g~v~~~d~~~~~~~~~~~~~----~~pnGia~spdg~~lyva~--~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d 163 (268)
|.+.+++.. ..+.+.... ..+.-.++++||+.+.+.. .....+++...++. ...+... ...-.-.+|
T Consensus 2 G~l~~~~~~--~~~pv~g~~~~~~~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~----~~~~~~g-~~l~~PS~d 74 (253)
T PF10647_consen 2 GQLVRVSGG--GVTPVPGALGEGGYDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP----VRPVLTG-GSLTRPSWD 74 (253)
T ss_pred CcEEEecCC--ceeECCCCcCcCCccccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc----ceeeccC-Ccccccccc
Confidence 566676543 334433222 2466799999998776655 45668888876542 1221111 122234889
Q ss_pred CCCCEEEEEecCC
Q 024436 164 PRGGFWVGIHSRR 176 (268)
Q Consensus 164 ~dG~l~va~~~~~ 176 (268)
++|.+|+......
T Consensus 75 ~~g~~W~v~~~~~ 87 (253)
T PF10647_consen 75 PDGWVWTVDDGSG 87 (253)
T ss_pred CCCCEEEEEcCCC
Confidence 9999999988654
No 235
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=86.91 E-value=9.6 Score=33.91 Aligned_cols=141 Identities=15% Similarity=0.227 Sum_probs=82.5
Q ss_pred cceEEECCCCCEEEEEeCCCeEEEEeCCCCeE----E---EEEEcC------------CC-------CC------eeEEE
Q 024436 36 PESLAFDALGEGPYTGVSDGRIIKWHQDQRRW----L---HFARTS------------PN-------RN------HISVI 83 (268)
Q Consensus 36 P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~----~---~~~~~~------------~~-------~~------~~~~~ 83 (268)
--++.++.+|+.+.+.--|+.+..|..+.+.+ + .+.... |. ++ |+.++
T Consensus 184 VLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ 263 (385)
T KOG1034|consen 184 VLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDF 263 (385)
T ss_pred EEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhh
Confidence 45678899999777665688888776653211 0 010000 00 11 22232
Q ss_pred -eecCCcceEEEEeCCC-----------CeEEEeecCCCCcce------EEEccCCCEEEEEecCCcEEEEEEccCCCCC
Q 024436 84 -LSGDKTGRLMKYDPAT-----------KQVTVLLGNLSFPNG------VALSEDGNYILLAETTSCRILRYWLKTSKAG 145 (268)
Q Consensus 84 -~~~~~~g~v~~~d~~~-----------~~~~~~~~~~~~pnG------ia~spdg~~lyva~~~~~~I~~~~~~~~~~g 145 (268)
++....++|..+.|.. ...+.+...+.+|++ .+|+|-++.| +.....+.|++|+++.....
T Consensus 264 ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~l-a~gnq~g~v~vwdL~~~ep~ 342 (385)
T KOG1034|consen 264 ILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKML-ALGNQSGKVYVWDLDNNEPP 342 (385)
T ss_pred eeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHH-hhccCCCcEEEEECCCCCCc
Confidence 3555677888888721 011223455677773 5777888744 56667789999999853221
Q ss_pred ceeEEEe-C-CCCCCceEEcCCCCEEEEEecCCC
Q 024436 146 TIEIVAQ-L-PGFPDNIKRSPRGGFWVGIHSRRK 177 (268)
Q Consensus 146 ~~~~~~~-l-~g~Pdgia~d~dG~l~va~~~~~~ 177 (268)
....+.. . ....+..++..||.+.++......
T Consensus 343 ~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~ 376 (385)
T KOG1034|consen 343 KCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGT 376 (385)
T ss_pred cCceEEeccccceeeeeeecccCcEEEEEeCCCc
Confidence 1222221 2 235678899999998888877663
No 236
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=86.87 E-value=22 Score=31.55 Aligned_cols=92 Identities=17% Similarity=0.171 Sum_probs=54.5
Q ss_pred EeecCCcceEEEEeCCCCeE---EEeecCCCCcceEEEccCCCEEEEEecCCcEEEE-EEccCCCCCceeEEEeC--CCC
Q 024436 83 ILSGDKTGRLMKYDPATKQV---TVLLGNLSFPNGVALSEDGNYILLAETTSCRILR-YWLKTSKAGTIEIVAQL--PGF 156 (268)
Q Consensus 83 ~~~~~~~g~v~~~d~~~~~~---~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~-~~~~~~~~g~~~~~~~l--~g~ 156 (268)
.+.+.+.|.|...|....+. ..+..+..--..++++-+|. +..+.+..+.+.| |+...+.+ ...+.+. +..
T Consensus 152 afPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt-~vATaStkGTLIRIFdt~~g~~--l~E~RRG~d~A~ 228 (346)
T KOG2111|consen 152 AFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGT-LVATASTKGTLIRIFDTEDGTL--LQELRRGVDRAD 228 (346)
T ss_pred EcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCcc-EEEEeccCcEEEEEEEcCCCcE--eeeeecCCchhe
Confidence 34666778888877764333 33444555567899999995 6677777786555 77654321 2222221 112
Q ss_pred CCceEEcCCCCEEEEEecCCC
Q 024436 157 PDNIKRSPRGGFWVGIHSRRK 177 (268)
Q Consensus 157 Pdgia~d~dG~l~va~~~~~~ 177 (268)
--.|++.++..+..+....++
T Consensus 229 iy~iaFSp~~s~LavsSdKgT 249 (346)
T KOG2111|consen 229 IYCIAFSPNSSWLAVSSDKGT 249 (346)
T ss_pred EEEEEeCCCccEEEEEcCCCe
Confidence 346888888765444444443
No 237
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=86.72 E-value=35 Score=33.80 Aligned_cols=145 Identities=19% Similarity=0.277 Sum_probs=82.5
Q ss_pred hcCCCEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCC------------CeEEEEEEcCCCC-CeeEEEeec
Q 024436 20 SSTQGVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQ------------RRWLHFARTSPNR-NHISVILSG 86 (268)
Q Consensus 20 ~~~~~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g------------~~~~~~~~~~~~~-~~~~~~~~~ 86 (268)
..++++++++-+ ...+-.|-|.++.++++..+|.+..++... ..|.. ..+|+. .++. ...
T Consensus 402 ~t~kciRTi~~~---y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi--~~~pD~~g~vT--~sa 474 (888)
T KOG0306|consen 402 DTLKCIRTITCG---YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSI--SLSPDNKGFVT--GSA 474 (888)
T ss_pred cCcceeEEeccc---cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeee--eecCCCCceEE--ecC
Confidence 347799999877 577788999999888898899888776432 11211 112221 1111 111
Q ss_pred CCcceEEEE----e-CCCC-eEEEe--ecCCCCc---ceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCC
Q 024436 87 DKTGRLMKY----D-PATK-QVTVL--LGNLSFP---NGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPG 155 (268)
Q Consensus 87 ~~~g~v~~~----d-~~~~-~~~~~--~~~~~~p---nGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g 155 (268)
+.+-.+|-+ + |.+. ++-.+ ...+..+ -.+.+||||++|-|+ -.++++.+|-+|. ..-|..|.|
T Consensus 475 DktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVs-LLdnTVkVyflDt-----lKFflsLYG 548 (888)
T KOG0306|consen 475 DKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVS-LLDNTVKVYFLDT-----LKFFLSLYG 548 (888)
T ss_pred CcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEE-eccCeEEEEEecc-----eeeeeeecc
Confidence 222222211 1 1111 10000 0112233 368999999976555 5778999998874 333333322
Q ss_pred --CC-CceEEcCCCCEEEEEecCCC
Q 024436 156 --FP-DNIKRSPRGGFWVGIHSRRK 177 (268)
Q Consensus 156 --~P-dgia~d~dG~l~va~~~~~~ 177 (268)
.| -.|.+.+|+++.+++....+
T Consensus 549 HkLPV~smDIS~DSklivTgSADKn 573 (888)
T KOG0306|consen 549 HKLPVLSMDISPDSKLIVTGSADKN 573 (888)
T ss_pred cccceeEEeccCCcCeEEeccCCCc
Confidence 33 46777789999998876654
No 238
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.47 E-value=4 Score=41.52 Aligned_cols=158 Identities=21% Similarity=0.245 Sum_probs=87.9
Q ss_pred CcceEEECCCCC-EEEEEeCCCeEEEEeCCCCeEEEEEE-----------cCCCCCeeEEEeecCCcceEEEEeCCCCe-
Q 024436 35 GPESLAFDALGE-GPYTGVSDGRIIKWHQDQRRWLHFAR-----------TSPNRNHISVILSGDKTGRLMKYDPATKQ- 101 (268)
Q Consensus 35 ~P~gia~~~dG~-~l~~~~~~g~I~~~~~~g~~~~~~~~-----------~~~~~~~~~~~~~~~~~g~v~~~d~~~~~- 101 (268)
.-.|+.|.+... ++.++.++|.|+.||.+... +.+.- .+=++..-+.+.....+|+...+|.+..+
T Consensus 118 ~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~-tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~p 196 (1049)
T KOG0307|consen 118 PVLGLDFNPFQGNLLASGADDGEILIWDLNKPE-TPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKP 196 (1049)
T ss_pred ceeeeeccccCCceeeccCCCCcEEEeccCCcC-CCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCc
Confidence 456788888655 77788889999999876421 11111 01111111222344567788888887332
Q ss_pred EEEeecC--CCCcceEEEccCCCEEEEEecCCc---EEEEEEccCCCCCceeEEE-eCCCCCCceEEcCCC-CEEEEEec
Q 024436 102 VTVLLGN--LSFPNGVALSEDGNYILLAETTSC---RILRYWLKTSKAGTIEIVA-QLPGFPDNIKRSPRG-GFWVGIHS 174 (268)
Q Consensus 102 ~~~~~~~--~~~pnGia~spdg~~lyva~~~~~---~I~~~~~~~~~~g~~~~~~-~l~g~Pdgia~d~dG-~l~va~~~ 174 (268)
+..+.+. -...++|+|.||..+-.++.+..+ .|..||+..... ...++. +-. ..-.+.+.+.+ ++.+++..
T Consensus 197 ii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ass-P~k~~~~H~~-GilslsWc~~D~~lllSsgk 274 (1049)
T KOG0307|consen 197 IIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASS-PLKILEGHQR-GILSLSWCPQDPRLLLSSGK 274 (1049)
T ss_pred ccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCC-chhhhccccc-ceeeeccCCCCchhhhcccC
Confidence 2222221 134679999999865444444433 677777652110 111221 111 23455666655 67776665
Q ss_pred CCCcceeeeEeeCccceeeeecccc
Q 024436 175 RRKGISKLVLSFPWIGNVLIKLPID 199 (268)
Q Consensus 175 ~~~~~~~~v~~~~~~g~~l~~i~~~ 199 (268)
.+ +++-| .+-+|+++..++..
T Consensus 275 D~-~ii~w---N~~tgEvl~~~p~~ 295 (1049)
T KOG0307|consen 275 DN-RIICW---NPNTGEVLGELPAQ 295 (1049)
T ss_pred CC-CeeEe---cCCCceEeeecCCC
Confidence 54 44433 56789999998874
No 239
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=86.42 E-value=4.8 Score=38.16 Aligned_cols=102 Identities=18% Similarity=0.232 Sum_probs=58.8
Q ss_pred cceEEEEeCCCCeEEEe--ecCCCCcceEEEccCCCEEEEEecC--CcEEEEEEccCCCCCceeEEEeC-CCCCCceEEc
Q 024436 89 TGRLMKYDPATKQVTVL--LGNLSFPNGVALSEDGNYILLAETT--SCRILRYWLKTSKAGTIEIVAQL-PGFPDNIKRS 163 (268)
Q Consensus 89 ~g~v~~~d~~~~~~~~~--~~~~~~pnGia~spdg~~lyva~~~--~~~I~~~~~~~~~~g~~~~~~~l-~g~Pdgia~d 163 (268)
+-+.|.+....++.+.+ .+. .+.|-+-++|.|+++.++.-. .+.+.-||.+-. ........ ......+.+|
T Consensus 471 tvsfY~~e~~~~~~~lVk~~dk-~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a---~~k~~~~~eh~~at~veWD 546 (698)
T KOG2314|consen 471 TVSFYAVETNIKKPSLVKELDK-KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYA---DLKDTASPEHFAATEVEWD 546 (698)
T ss_pred ceeEEEeecCCCchhhhhhhcc-cccceEEEcCCCcEEEEEEecccccceEEEecchh---hhhhccCccccccccceEC
Confidence 34666666543443332 222 678999999999988887654 567777777621 11111111 1245689999
Q ss_pred CCCCEEEEEecCCC-cceeeeEeeCccceeee
Q 024436 164 PRGGFWVGIHSRRK-GISKLVLSFPWIGNVLI 194 (268)
Q Consensus 164 ~dG~l~va~~~~~~-~~~~~v~~~~~~g~~l~ 194 (268)
|.|++.+++..... ++..--..++..|++++
T Consensus 547 PtGRYvvT~ss~wrhk~d~GYri~tfqGrll~ 578 (698)
T KOG2314|consen 547 PTGRYVVTSSSSWRHKVDNGYRIFTFQGRLLK 578 (698)
T ss_pred CCCCEEEEeeehhhhccccceEEEEeecHHHH
Confidence 99998887654321 22111233555666554
No 240
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=86.41 E-value=1.1 Score=43.51 Aligned_cols=102 Identities=11% Similarity=0.108 Sum_probs=52.9
Q ss_pred ceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCc-EEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCE
Q 024436 90 GRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSC-RILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGF 168 (268)
Q Consensus 90 g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~-~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l 168 (268)
.+||.+..- +.+..+.++--.-..++|+|.++++.-..+... -|-+|++.-...+.... +......+++.+||.+
T Consensus 104 ~kVw~la~h-~vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~~~asnk---iss~Vsav~fsEdgSY 179 (1080)
T KOG1408|consen 104 SKVWSLAFH-GVVAEFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVNSSGASNK---ISSVVSAVAFSEDGSY 179 (1080)
T ss_pred ceeeeeccc-cchhhhhhccccceeeeecCCCcEEEeeccccceEEEhhhhhhcccccccc---cceeEEEEEEccCCce
Confidence 345544333 333344444444568999999986642332222 33345443111111111 2234567899999999
Q ss_pred EEEEecCCCcceeeeEeeCccceeeeecccc
Q 024436 169 WVGIHSRRKGISKLVLSFPWIGNVLIKLPID 199 (268)
Q Consensus 169 ~va~~~~~~~~~~~v~~~~~~g~~l~~i~~~ 199 (268)
+|+....+-+++ .....+|.-..||++
T Consensus 180 fvT~gnrHvk~w----yl~~~~KykdpiPl~ 206 (1080)
T KOG1408|consen 180 FVTSGNRHVKLW----YLQIQSKYKDPIPLP 206 (1080)
T ss_pred eeeeeeeeEEEE----EeeccccccCCcccc
Confidence 998877664322 223334555556554
No 241
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=86.30 E-value=1.9 Score=25.45 Aligned_cols=22 Identities=27% Similarity=0.261 Sum_probs=18.3
Q ss_pred CCcceEEECCCCCEEEEEeCCC
Q 024436 34 IGPESLAFDALGEGPYTGVSDG 55 (268)
Q Consensus 34 ~~P~gia~~~dG~~l~~~~~~g 55 (268)
..|.+|++|++|++|+++..++
T Consensus 13 ~~~~~IavD~~GNiYv~G~T~~ 34 (38)
T PF06739_consen 13 DYGNGIAVDSNGNIYVTGYTNG 34 (38)
T ss_pred eeEEEEEECCCCCEEEEEeecC
Confidence 4699999999999888876554
No 242
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=86.27 E-value=15 Score=32.27 Aligned_cols=79 Identities=11% Similarity=0.042 Sum_probs=51.5
Q ss_pred CcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeC---CCCCCceEEcCCCCEEEEEecCCCcceeeeEeeC
Q 024436 111 FPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL---PGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFP 187 (268)
Q Consensus 111 ~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l---~g~Pdgia~d~dG~l~va~~~~~~~~~~~v~~~~ 187 (268)
.-|-+.|+|||. .+++....+.|.-|...+. .+.+..+ .|-.-++.+..||+..+++.... ++..| ..
T Consensus 49 eI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~gd----ceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk-~v~~w---D~ 119 (338)
T KOG0265|consen 49 EIYTIKFHPDGS-CFASGGSDRAIVLWNVYGD----CENFWVLKGHSGAVMELHGMRDGSHILSCGTDK-TVRGW---DA 119 (338)
T ss_pred eEEEEEECCCCC-eEeecCCcceEEEEecccc----ccceeeeccccceeEeeeeccCCCEEEEecCCc-eEEEE---ec
Confidence 346799999995 8889889999999997652 2333222 23456777888888777776654 33322 23
Q ss_pred ccceeeeeccc
Q 024436 188 WIGNVLIKLPI 198 (268)
Q Consensus 188 ~~g~~l~~i~~ 198 (268)
.+|+.+++...
T Consensus 120 ~tG~~~rk~k~ 130 (338)
T KOG0265|consen 120 ETGKRIRKHKG 130 (338)
T ss_pred ccceeeehhcc
Confidence 45666655544
No 243
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=86.27 E-value=30 Score=32.70 Aligned_cols=136 Identities=16% Similarity=0.115 Sum_probs=82.6
Q ss_pred CCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeE-EEE----EEc-----CCCCCeeEEEeecCCcceEEEEeCCCCeEE
Q 024436 34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRW-LHF----ART-----SPNRNHISVILSGDKTGRLMKYDPATKQVT 103 (268)
Q Consensus 34 ~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~-~~~----~~~-----~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~ 103 (268)
+.--|+.+.+|++.+.++-+|+++..++...... ..+ +.. .|-..-+.+...+..+.+|..+|..+|+..
T Consensus 302 qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i 381 (484)
T KOG0305|consen 302 QEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARI 381 (484)
T ss_pred ceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEe
Confidence 4567899999999999998999999988743211 111 110 111112334445567788888998877765
Q ss_pred EeecCCCCcceEEEccCCCEEEEEecC-CcEEEEEEccCCCCCceeEEEeCCC---CCCceEEcCCCCEEEEEec
Q 024436 104 VLLGNLSFPNGVALSEDGNYILLAETT-SCRILRYWLKTSKAGTIEIVAQLPG---FPDNIKRSPRGGFWVGIHS 174 (268)
Q Consensus 104 ~~~~~~~~pnGia~spdg~~lyva~~~-~~~I~~~~~~~~~~g~~~~~~~l~g---~Pdgia~d~dG~l~va~~~ 174 (268)
...+....--.|+|++..+.|..+-.. .+.|..|+... ......+.| ..=-+++.|||...+....
T Consensus 382 ~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps-----~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~ 451 (484)
T KOG0305|consen 382 DSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPS-----MKLVAELLGHTSRVLYLALSPDGETIVTGAA 451 (484)
T ss_pred cccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccc-----cceeeeecCCcceeEEEEECCCCCEEEEecc
Confidence 555555556689999999888777543 34555555432 112222222 2335677888865444433
No 244
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=85.84 E-value=27 Score=33.17 Aligned_cols=111 Identities=17% Similarity=0.249 Sum_probs=60.3
Q ss_pred EecCCCCCcceEEECCCCCEEEE--EeCCCeEEEEeCCCCeEEEEEEc-------CCCCCeeEEEeecCCcceEEEEeCC
Q 024436 28 YQIEGAIGPESLAFDALGEGPYT--GVSDGRIIKWHQDQRRWLHFART-------SPNRNHISVILSGDKTGRLMKYDPA 98 (268)
Q Consensus 28 i~~~~~~~P~gia~~~dG~~l~~--~~~~g~I~~~~~~g~~~~~~~~~-------~~~~~~~~~~~~~~~~g~v~~~d~~ 98 (268)
+++.+-..-+++.++|+|+-+.+ +..-.++..++.++..+..+... +|.++++.....+.-.|.+-.+|-.
T Consensus 265 V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~ 344 (566)
T KOG2315|consen 265 VPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVP 344 (566)
T ss_pred EecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEecc
Confidence 44443334577888888875544 33356666677777654444221 1222333333333445666667665
Q ss_pred CCeEEEeecCCCCcc--eEEEccCCCEEEEEecC-----CcEEEEEEccC
Q 024436 99 TKQVTVLLGNLSFPN--GVALSEDGNYILLAETT-----SCRILRYWLKT 141 (268)
Q Consensus 99 ~~~~~~~~~~~~~pn--Gia~spdg~~lyva~~~-----~~~I~~~~~~~ 141 (268)
+.+ ....+..+| =..|+|||++++.+-+. ++.+..|...|
T Consensus 345 n~K---~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 345 NRK---LIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred chh---hccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 322 222233333 47899999988877654 23444555555
No 245
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=85.35 E-value=0.96 Score=23.73 Aligned_cols=17 Identities=24% Similarity=0.559 Sum_probs=13.1
Q ss_pred CCceEEcCCCCEEEEEe
Q 024436 157 PDNIKRSPRGGFWVGIH 173 (268)
Q Consensus 157 Pdgia~d~dG~l~va~~ 173 (268)
...|..|++|+||++..
T Consensus 7 I~~i~~D~~G~lWigT~ 23 (24)
T PF07494_consen 7 IYSIYEDSDGNLWIGTY 23 (24)
T ss_dssp EEEEEE-TTSCEEEEET
T ss_pred EEEEEEcCCcCEEEEeC
Confidence 34688999999999874
No 246
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=85.08 E-value=35 Score=32.28 Aligned_cols=107 Identities=21% Similarity=0.275 Sum_probs=66.3
Q ss_pred CCcceEEECCCCCEEEEEeCCCeEEEEeCCCCe-EEEEEEcCCCC----Ce-eEEEeecCCcceEEEEeCCCCeE--EEe
Q 024436 34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRR-WLHFARTSPNR----NH-ISVILSGDKTGRLMKYDPATKQV--TVL 105 (268)
Q Consensus 34 ~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~-~~~~~~~~~~~----~~-~~~~~~~~~~g~v~~~d~~~~~~--~~~ 105 (268)
.....+...++|+.+.++..+|.|..+|..... ..........+ .| ...+..+...+.|...|-...+. +.+
T Consensus 218 ~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~ 297 (484)
T KOG0305|consen 218 ELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTL 297 (484)
T ss_pred CceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhh
Confidence 578999999999999999999999999864321 11111100111 00 11233455667777776643221 112
Q ss_pred ecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccC
Q 024436 106 LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT 141 (268)
Q Consensus 106 ~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~ 141 (268)
..+-..--|+.+++|++ .+.+....+++..|+...
T Consensus 298 ~~H~qeVCgLkws~d~~-~lASGgnDN~~~Iwd~~~ 332 (484)
T KOG0305|consen 298 QGHRQEVCGLKWSPDGN-QLASGGNDNVVFIWDGLS 332 (484)
T ss_pred hcccceeeeeEECCCCC-eeccCCCccceEeccCCC
Confidence 22233345999999997 446777788999999843
No 247
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=85.04 E-value=22 Score=34.48 Aligned_cols=138 Identities=18% Similarity=0.154 Sum_probs=74.3
Q ss_pred CCCEEEEEeCC-----CeEEEEeCCCCeEEEEEEcCCCC---------CeeEEEee-cC---CcceEEEEeCCCCeEEEe
Q 024436 44 LGEGPYTGVSD-----GRIIKWHQDQRRWLHFARTSPNR---------NHISVILS-GD---KTGRLMKYDPATKQVTVL 105 (268)
Q Consensus 44 dG~~l~~~~~~-----g~I~~~~~~g~~~~~~~~~~~~~---------~~~~~~~~-~~---~~g~v~~~d~~~~~~~~~ 105 (268)
+|.+|+++-.+ ..|.++++....|...+.....+ ..++.+.. .. .-..+.+|||.+++++.+
T Consensus 380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~ 459 (571)
T KOG4441|consen 380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLI 459 (571)
T ss_pred CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeec
Confidence 56656654322 34677888877776654322211 12222211 11 235789999999988876
Q ss_pred ecCC--CCcceEEEccCCCEEEEEecCCc-----EEEEEEccCCCCCceeEEEeC--CCCCCceEEcCCCCEEEEEecCC
Q 024436 106 LGNL--SFPNGVALSEDGNYILLAETTSC-----RILRYWLKTSKAGTIEIVAQL--PGFPDNIKRSPRGGFWVGIHSRR 176 (268)
Q Consensus 106 ~~~~--~~pnGia~spdg~~lyva~~~~~-----~I~~~~~~~~~~g~~~~~~~l--~g~Pdgia~d~dG~l~va~~~~~ 176 (268)
..-. ..-.|++.- ++ .||+....++ +|-+|++... ....+... +...-|++.. ++.+|+.....+
T Consensus 460 ~~M~~~R~~~g~a~~-~~-~iYvvGG~~~~~~~~~VE~ydp~~~---~W~~v~~m~~~rs~~g~~~~-~~~ly~vGG~~~ 533 (571)
T KOG4441|consen 460 APMNTRRSGFGVAVL-NG-KIYVVGGFDGTSALSSVERYDPETN---QWTMVAPMTSPRSAVGVVVL-GGKLYAVGGFDG 533 (571)
T ss_pred CCcccccccceEEEE-CC-EEEEECCccCCCccceEEEEcCCCC---ceeEcccCccccccccEEEE-CCEEEEEecccC
Confidence 5322 223466666 34 6999866443 4777887642 23333322 2223455654 567777554433
Q ss_pred CcceeeeEeeC
Q 024436 177 KGISKLVLSFP 187 (268)
Q Consensus 177 ~~~~~~v~~~~ 187 (268)
...+.-|..|.
T Consensus 534 ~~~l~~ve~yd 544 (571)
T KOG4441|consen 534 NNNLNTVECYD 544 (571)
T ss_pred ccccceeEEcC
Confidence 33444455543
No 248
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=84.20 E-value=32 Score=31.09 Aligned_cols=162 Identities=15% Similarity=0.134 Sum_probs=92.6
Q ss_pred CEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCC-CCeEEEEEEc---------CCCCCeeEEEeecCCcceEE
Q 024436 24 GVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQD-QRRWLHFART---------SPNRNHISVILSGDKTGRLM 93 (268)
Q Consensus 24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~-g~~~~~~~~~---------~~~~~~~~~~~~~~~~g~v~ 93 (268)
.+.+|.... ..-..++.+|+.++.+++-.|++-+.|+.. |......... +-++.|+ .++.=.|.|.
T Consensus 56 S~~tF~~H~-~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlL---ATGdmsG~v~ 131 (399)
T KOG0296|consen 56 SLVTFDKHT-DSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLL---ATGDMSGKVL 131 (399)
T ss_pred ceeehhhcC-CceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEE---EecCCCccEE
Confidence 555666553 467889999988888888888777777643 3321111100 0011111 2334456676
Q ss_pred EEeCCCCeEEEeec-CCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCC-CceEEcCCCCEEEE
Q 024436 94 KYDPATKQVTVLLG-NLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFP-DNIKRSPRGGFWVG 171 (268)
Q Consensus 94 ~~d~~~~~~~~~~~-~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~P-dgia~d~dG~l~va 171 (268)
.+..++|..+.... ...--.=+.+.|-+. ++.+.+..+.+|.|.+..+ +...++.. ++.| .-=.+-|||+....
T Consensus 132 v~~~stg~~~~~~~~e~~dieWl~WHp~a~-illAG~~DGsvWmw~ip~~--~~~kv~~G-h~~~ct~G~f~pdGKr~~t 207 (399)
T KOG0296|consen 132 VFKVSTGGEQWKLDQEVEDIEWLKWHPRAH-ILLAGSTDGSVWMWQIPSQ--ALCKVMSG-HNSPCTCGEFIPDGKRILT 207 (399)
T ss_pred EEEcccCceEEEeecccCceEEEEeccccc-EEEeecCCCcEEEEECCCc--ceeeEecC-CCCCcccccccCCCceEEE
Confidence 66666665543332 222122367889875 7778889999999998742 22233321 1112 12245577876666
Q ss_pred EecCCCcceeeeEeeCccceeeeecc
Q 024436 172 IHSRRKGISKLVLSFPWIGNVLIKLP 197 (268)
Q Consensus 172 ~~~~~~~~~~~v~~~~~~g~~l~~i~ 197 (268)
....+ .+..| .+++|+.+.++.
T Consensus 208 gy~dg-ti~~W---n~ktg~p~~~~~ 229 (399)
T KOG0296|consen 208 GYDDG-TIIVW---NPKTGQPLHKIT 229 (399)
T ss_pred EecCc-eEEEE---ecCCCceeEEec
Confidence 66655 33333 578888888776
No 249
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=84.10 E-value=43 Score=32.58 Aligned_cols=115 Identities=16% Similarity=0.168 Sum_probs=68.9
Q ss_pred CEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCC-CCeEEEEEEcCCCCCee-------EEEeecCCcceEEEE
Q 024436 24 GVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQD-QRRWLHFARTSPNRNHI-------SVILSGDKTGRLMKY 95 (268)
Q Consensus 24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~-g~~~~~~~~~~~~~~~~-------~~~~~~~~~g~v~~~ 95 (268)
+..+|..|....-|++++.+.|+ +++...+|.|.-||+- ++..... ...++.-|- ....-+-.+|.++.+
T Consensus 60 ~~~vi~g~~drsIE~L~W~e~~R-LFS~g~sg~i~EwDl~~lk~~~~~-d~~gg~IWsiai~p~~~~l~IgcddGvl~~~ 137 (691)
T KOG2048|consen 60 LEPVIHGPEDRSIESLAWAEGGR-LFSSGLSGSITEWDLHTLKQKYNI-DSNGGAIWSIAINPENTILAIGCDDGVLYDF 137 (691)
T ss_pred eeEEEecCCCCceeeEEEccCCe-EEeecCCceEEEEecccCceeEEe-cCCCcceeEEEeCCccceEEeecCCceEEEE
Confidence 44456666667899999997777 7887788999888863 3321111 000110010 011111234567777
Q ss_pred eCCCCeEEE---eecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccC
Q 024436 96 DPATKQVTV---LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT 141 (268)
Q Consensus 96 d~~~~~~~~---~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~ 141 (268)
+...++++- +..+-...-.+.|+|++..| ++.+..+.|..||...
T Consensus 138 s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i-~~Gs~Dg~Iriwd~~~ 185 (691)
T KOG2048|consen 138 SIGPDKITYKRSLMRQKSRVLSLSWNPTGTKI-AGGSIDGVIRIWDVKS 185 (691)
T ss_pred ecCCceEEEEeecccccceEEEEEecCCccEE-EecccCceEEEEEcCC
Confidence 666555532 22222445579999999655 6788889999999874
No 250
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=83.96 E-value=5.7 Score=23.81 Aligned_cols=33 Identities=18% Similarity=0.254 Sum_probs=21.2
Q ss_pred CCcc-eEEEEeCCCCeE-EEeecCCCCcceEEEcc
Q 024436 87 DKTG-RLMKYDPATKQV-TVLLGNLSFPNGVALSE 119 (268)
Q Consensus 87 ~~~g-~v~~~d~~~~~~-~~~~~~~~~pnGia~sp 119 (268)
.... .|.+.+.++... ..+.+.+..|+|||+++
T Consensus 8 ~~~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 8 WSQDPSIERANLDGSNRRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp TTTTEEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred CCCCcEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence 3444 666666654333 33456789999999875
No 251
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=83.70 E-value=26 Score=32.20 Aligned_cols=31 Identities=13% Similarity=0.226 Sum_probs=27.7
Q ss_pred cceEEEccCCCEEEEEecCCcEEEEEEccCC
Q 024436 112 PNGVALSEDGNYILLAETTSCRILRYWLKTS 142 (268)
Q Consensus 112 pnGia~spdg~~lyva~~~~~~I~~~~~~~~ 142 (268)
-..|-+|=|.++|||+.+..+-|+.||+.++
T Consensus 314 ITDilISmDDRFLYvs~WLHGDirQYdIsDP 344 (476)
T KOG0918|consen 314 ITDILISLDDRFLYVSNWLHGDIRQYDISDP 344 (476)
T ss_pred hheeEEeecCcEEEEEeeeecceeeeccCCC
Confidence 3578999999999999999999999999864
No 252
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=83.65 E-value=21 Score=33.56 Aligned_cols=104 Identities=19% Similarity=0.233 Sum_probs=56.8
Q ss_pred CcceEEECCCCCEEE-EEeCCCeEEEEeCCCCeE-EEEE--EcCCCC--------CeeEEEeecCCcceEEEEeCCCCeE
Q 024436 35 GPESLAFDALGEGPY-TGVSDGRIIKWHQDQRRW-LHFA--RTSPNR--------NHISVILSGDKTGRLMKYDPATKQV 102 (268)
Q Consensus 35 ~P~gia~~~dG~~l~-~~~~~g~I~~~~~~g~~~-~~~~--~~~~~~--------~~~~~~~~~~~~g~v~~~d~~~~~~ 102 (268)
.-+-+.+++-.+.+. +...+|.|..||..|... ..+. ...|-+ +-+.. .-.=+-+|+.||....+.
T Consensus 166 svRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~v--sVG~Dkki~~yD~~s~~s 243 (673)
T KOG4378|consen 166 SVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLV--SVGYDKKINIYDIRSQAS 243 (673)
T ss_pred eEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEE--EecccceEEEeecccccc
Confidence 334555666544443 344568888887776521 1111 111211 11111 112234788888764332
Q ss_pred E-EeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCC
Q 024436 103 T-VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS 142 (268)
Q Consensus 103 ~-~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~ 142 (268)
. .+... .--.-++|+++|. ..++.+..++|+.||+.+.
T Consensus 244 ~~~l~y~-~Plstvaf~~~G~-~L~aG~s~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 244 TDRLTYS-HPLSTVAFSECGT-YLCAGNSKGELIAYDMRST 282 (673)
T ss_pred cceeeec-CCcceeeecCCce-EEEeecCCceEEEEecccC
Confidence 2 22211 1124799999995 6688889999999999864
No 253
>PRK13616 lipoprotein LpqB; Provisional
Probab=83.56 E-value=46 Score=32.43 Aligned_cols=78 Identities=21% Similarity=0.151 Sum_probs=44.7
Q ss_pred cceEEEEeCCCCeEEEee---cCCCCcceEEEccCCCEEEEEec-------CCcEEEEEEccCCCCCceeEEEeCCCCCC
Q 024436 89 TGRLMKYDPATKQVTVLL---GNLSFPNGVALSEDGNYILLAET-------TSCRILRYWLKTSKAGTIEIVAQLPGFPD 158 (268)
Q Consensus 89 ~g~v~~~d~~~~~~~~~~---~~~~~pnGia~spdg~~lyva~~-------~~~~I~~~~~~~~~~g~~~~~~~l~g~Pd 158 (268)
.|++.+++.. ..+.+. .....+...+++|||+.+.+... ...+||+.+..+. ...+..-. .-.
T Consensus 328 ~G~l~~~~~~--~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~----~~~lt~g~-~~t 400 (591)
T PRK13616 328 DGSLVSVDGQ--GVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV----AVQVLEGH-SLT 400 (591)
T ss_pred CCeEEEecCC--CeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc----ceeeecCC-CCC
Confidence 5667776543 233322 23346778999999997766552 2347888886432 12222211 123
Q ss_pred ceEEcCCC-CEEEEEe
Q 024436 159 NIKRSPRG-GFWVGIH 173 (268)
Q Consensus 159 gia~d~dG-~l~va~~ 173 (268)
.-.+++|| .+|....
T Consensus 401 ~PsWspDG~~lw~v~d 416 (591)
T PRK13616 401 RPSWSLDADAVWVVVD 416 (591)
T ss_pred CceECCCCCceEEEec
Confidence 45888886 4777654
No 254
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=83.21 E-value=13 Score=31.54 Aligned_cols=139 Identities=13% Similarity=0.040 Sum_probs=61.9
Q ss_pred EEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeC---CCCeEEEE-EEcCCC--CCeeEEEeecCCcceEEEEeCCCC
Q 024436 27 QYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQ---DQRRWLHF-ARTSPN--RNHISVILSGDKTGRLMKYDPATK 100 (268)
Q Consensus 27 ~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~---~g~~~~~~-~~~~~~--~~~~~~~~~~~~~g~v~~~d~~~~ 100 (268)
+|..+ +.+-.-|++.|+|++|++. ++.+++-.+ .+..+... ...+.+ ..|. .+.-.++|.||.++++ |
T Consensus 28 ~iG~g-w~~~~~i~~~P~g~lY~I~--~~~lY~~~~~~~~~~~~~~~~~~Ig~g~W~~F~--~i~~d~~G~LYaV~~~-G 101 (229)
T PF14517_consen 28 TIGSG-WNNFRDIAAGPNGRLYAIR--NDGLYRGSPSSSGGNTWDSGSKQIGDGGWNSFK--FIFFDPTGVLYAVTPD-G 101 (229)
T ss_dssp EEESS--TT-SEEEE-TTS-EEEEE--TTEEEEES---STT--HHHH-EEEE-S-GGG-S--EEEE-TTS-EEEEETT--
T ss_pred hcCcc-ccccceEEEcCCceEEEEE--CCceEEecCCccCcccccccCcccccCccccee--EEEecCCccEEEeccc-c
Confidence 34442 5567789999999977775 337777632 22211100 000111 0111 1122455666666554 4
Q ss_pred eEEE------------------e-ecCCCCcceEEEccCCCEEEEEecCCcEEEEE-EccCCC---CCceeEEEeC-CCC
Q 024436 101 QVTV------------------L-LGNLSFPNGVALSEDGNYILLAETTSCRILRY-WLKTSK---AGTIEIVAQL-PGF 156 (268)
Q Consensus 101 ~~~~------------------~-~~~~~~pnGia~spdg~~lyva~~~~~~I~~~-~~~~~~---~g~~~~~~~l-~g~ 156 (268)
++.. + ..+-...+-|-+.|+| .||.-+. ++++++. ++++.. +.....+..- -..
T Consensus 102 ~lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~~vfa~~~G-vLY~i~~-dg~~~~~~~p~~~~~~W~~~s~~v~~~gw~~ 179 (229)
T PF14517_consen 102 KLYRHPRPTNGSDNWIGGSGKKIGGTGWNDFDAVFAGPNG-VLYAITP-DGRLYRRYRPDGGSDRWLSGSGLVGGGGWDS 179 (229)
T ss_dssp EEEEES---STT--HHH-HSEEEE-SSGGGEEEEEE-TTS--EEEEET-TE-EEEE---SSTT--HHHH-EEEESSSGGG
T ss_pred ceeeccCCCccCcchhhccceecccCCCccceEEEeCCCc-cEEEEcC-CCceEEeCCCCCCCCccccccceeccCCccc
Confidence 4322 2 1222334568889999 5998874 4578877 444321 1111222221 124
Q ss_pred CCceEEcCCCCEEEEEe
Q 024436 157 PDNIKRSPRGGFWVGIH 173 (268)
Q Consensus 157 Pdgia~d~dG~l~va~~ 173 (268)
+.-|...++|+||....
T Consensus 180 ~~~i~~~~~g~L~~V~~ 196 (229)
T PF14517_consen 180 FHFIFFSPDGNLWAVKS 196 (229)
T ss_dssp EEEEEE-TTS-EEEE-E
T ss_pred ceEEeeCCCCcEEEEec
Confidence 77899999999998833
No 255
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=83.10 E-value=4.1 Score=39.31 Aligned_cols=77 Identities=17% Similarity=0.128 Sum_probs=45.2
Q ss_pred eEEEEeCCCCeEE-EeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCC----CCCCceEEcCC
Q 024436 91 RLMKYDPATKQVT-VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLP----GFPDNIKRSPR 165 (268)
Q Consensus 91 ~v~~~d~~~~~~~-~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~----g~Pdgia~d~d 165 (268)
.|-.||..+++.. .+..+-..--||||||||+ ...+-...++|.+|.+... .+.+.+.+ +.-.-|.+.-|
T Consensus 701 Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr-~~AtVcKDg~~rVy~Prs~----e~pv~Eg~gpvgtRgARi~wacd 775 (1012)
T KOG1445|consen 701 TIELWDLANAKLYSRLVGHTDQIFGIAWSPDGR-RIATVCKDGTLRVYEPRSR----EQPVYEGKGPVGTRGARILWACD 775 (1012)
T ss_pred eeeeeehhhhhhhheeccCcCceeEEEECCCCc-ceeeeecCceEEEeCCCCC----CCccccCCCCccCcceeEEEEec
Confidence 4555555544432 3444445566999999997 5567778899999987631 12222222 12234566667
Q ss_pred CCEEEEE
Q 024436 166 GGFWVGI 172 (268)
Q Consensus 166 G~l~va~ 172 (268)
|++.++.
T Consensus 776 gr~viv~ 782 (1012)
T KOG1445|consen 776 GRIVIVV 782 (1012)
T ss_pred CcEEEEe
Confidence 7754433
No 256
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=82.35 E-value=34 Score=30.10 Aligned_cols=106 Identities=15% Similarity=0.206 Sum_probs=65.3
Q ss_pred CCcceEEECCCCCEEEEEe-CCCeEEEEeCCCCeEEEEEEcCCC--------------CCeeEEEeecCCcceEEEEeCC
Q 024436 34 IGPESLAFDALGEGPYTGV-SDGRIIKWHQDQRRWLHFARTSPN--------------RNHISVILSGDKTGRLMKYDPA 98 (268)
Q Consensus 34 ~~P~gia~~~dG~~l~~~~-~~g~I~~~~~~g~~~~~~~~~~~~--------------~~~~~~~~~~~~~g~v~~~d~~ 98 (268)
+--+.|+|..++.-++++. .||.|..+|.............|. .+|+..+.. ....|..+|-.
T Consensus 197 KEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~--dS~~V~iLDiR 274 (364)
T KOG0290|consen 197 KEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAM--DSNKVVILDIR 274 (364)
T ss_pred cceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhc--CCceEEEEEec
Confidence 4678899999887777766 478888887643322222221111 123433322 23345555543
Q ss_pred C--CeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccC
Q 024436 99 T--KQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT 141 (268)
Q Consensus 99 ~--~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~ 141 (268)
. .-+..+..+-..-|||+|.|..+.-..+.........||++.
T Consensus 275 ~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 275 VPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred CCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence 1 123334455667799999999877778888888999999873
No 257
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=81.33 E-value=44 Score=30.64 Aligned_cols=117 Identities=13% Similarity=0.044 Sum_probs=60.5
Q ss_pred EEEEecCCCCCcceEEECCCCCEE-EEEeCCCeEEEEeCCCCeEEEE----------E---EcCCCCC------------
Q 024436 25 VVQYQIEGAIGPESLAFDALGEGP-YTGVSDGRIIKWHQDQRRWLHF----------A---RTSPNRN------------ 78 (268)
Q Consensus 25 ~~~i~~~~~~~P~gia~~~dG~~l-~~~~~~g~I~~~~~~g~~~~~~----------~---~~~~~~~------------ 78 (268)
+.++.-+......|..++++.+.+ |+ .+..++.+++.+......+ . ..+....
T Consensus 72 i~QLTdg~g~~~~g~~~s~~~~~~~Yv-~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~ 150 (386)
T PF14583_consen 72 ITQLTDGPGDNTFGGFLSPDDRALYYV-KNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWK 150 (386)
T ss_dssp EEE---SS-B-TTT-EE-TTSSEEEEE-ETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG--
T ss_pred EEECccCCCCCccceEEecCCCeEEEE-ECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhcc
Confidence 333433322233467777877765 44 3456888888765421111 1 0111111
Q ss_pred ------eeEEEeecCCcceEEEEeCCCCeEEEeecCCCCcceEEEccCCC-EE-EEEecC----CcEEEEEEccCC
Q 024436 79 ------HISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGN-YI-LLAETT----SCRILRYWLKTS 142 (268)
Q Consensus 79 ------~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~-~l-yva~~~----~~~I~~~~~~~~ 142 (268)
++.++++..+..+|+.+|.++|+.+++.+.-.+-+.+.++|..- .| |+=|.. ..|||..+.+|.
T Consensus 151 ~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~ 226 (386)
T PF14583_consen 151 PLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGS 226 (386)
T ss_dssp ---SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS-
T ss_pred CccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCC
Confidence 12233445677899999999999999988878888999998643 33 333332 358999998874
No 258
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=81.22 E-value=29 Score=31.28 Aligned_cols=71 Identities=14% Similarity=0.139 Sum_probs=38.7
Q ss_pred EccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEe-CC---CCCCceEEcCCCCEEEEEecCCCcceeeeEeeCc-cce
Q 024436 117 LSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-LP---GFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFPW-IGN 191 (268)
Q Consensus 117 ~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~-l~---g~Pdgia~d~dG~l~va~~~~~~~~~~~v~~~~~-~g~ 191 (268)
..-|| .+|+. ...++|+.++.+++. ..+.. +. ....+-.+..+|++|++.+... +-++.. +|+
T Consensus 65 ~~~dg-~v~~~-~~~G~i~A~d~~~g~----~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g~------~y~ld~~~G~ 132 (370)
T COG1520 65 ADGDG-TVYVG-TRDGNIFALNPDTGL----VKWSYPLLGAVAQLSGPILGSDGKIYVGSWDGK------LYALDASTGT 132 (370)
T ss_pred EeeCC-eEEEe-cCCCcEEEEeCCCCc----EEecccCcCcceeccCceEEeCCeEEEecccce------EEEEECCCCc
Confidence 44466 47776 445688888877532 11211 11 1222223333899999988773 444443 677
Q ss_pred eeeecccc
Q 024436 192 VLIKLPID 199 (268)
Q Consensus 192 ~l~~i~~~ 199 (268)
.+...+.+
T Consensus 133 ~~W~~~~~ 140 (370)
T COG1520 133 LVWSRNVG 140 (370)
T ss_pred EEEEEecC
Confidence 66555444
No 259
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=80.82 E-value=3.6 Score=26.53 Aligned_cols=30 Identities=17% Similarity=0.135 Sum_probs=22.1
Q ss_pred cceEEECCCCCEEEEEeC-------CCeEEEEeCCCC
Q 024436 36 PESLAFDALGEGPYTGVS-------DGRIIKWHQDQR 65 (268)
Q Consensus 36 P~gia~~~dG~~l~~~~~-------~g~I~~~~~~g~ 65 (268)
.+++++.|||++++++.. +..|.|++++|.
T Consensus 3 ~~~~~~q~DGkIlv~G~~~~~~~~~~~~l~Rln~DGs 39 (55)
T TIGR02608 3 AYAVAVQSDGKILVAGYVDNSSGNNDFVLARLNADGS 39 (55)
T ss_pred eEEEEECCCCcEEEEEEeecCCCcccEEEEEECCCCC
Confidence 467899999998887642 344777777776
No 260
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=80.77 E-value=5.3 Score=23.12 Aligned_cols=20 Identities=30% Similarity=0.494 Sum_probs=14.3
Q ss_pred cceEEEccCCCEEEEEecCC
Q 024436 112 PNGVALSEDGNYILLAETTS 131 (268)
Q Consensus 112 pnGia~spdg~~lyva~~~~ 131 (268)
-...+|||||++||++....
T Consensus 11 ~~~p~~SpDGk~i~f~s~~~ 30 (39)
T PF07676_consen 11 DGSPAWSPDGKYIYFTSNRN 30 (39)
T ss_dssp EEEEEE-TTSSEEEEEEECT
T ss_pred ccCEEEecCCCEEEEEecCC
Confidence 34689999999988875443
No 261
>PHA02713 hypothetical protein; Provisional
Probab=80.63 E-value=42 Score=32.38 Aligned_cols=77 Identities=14% Similarity=0.121 Sum_probs=45.0
Q ss_pred ceEEEEeCCCCeEEEeecCCCC---cceEEEccCCCEEEEEecCC------cEEEEEEccC-CCCCceeEEEeCCC--CC
Q 024436 90 GRLMKYDPATKQVTVLLGNLSF---PNGVALSEDGNYILLAETTS------CRILRYWLKT-SKAGTIEIVAQLPG--FP 157 (268)
Q Consensus 90 g~v~~~d~~~~~~~~~~~~~~~---pnGia~spdg~~lyva~~~~------~~I~~~~~~~-~~~g~~~~~~~l~g--~P 157 (268)
..+.+|||.+.+++.+.. +.. ..+++.- +| .|||....+ ..+.+|+++. . ..+.+..+|. .-
T Consensus 432 ~~ve~YDP~td~W~~v~~-m~~~r~~~~~~~~-~~-~IYv~GG~~~~~~~~~~ve~Ydp~~~~---~W~~~~~m~~~r~~ 505 (557)
T PHA02713 432 NKVIRYDTVNNIWETLPN-FWTGTIRPGVVSH-KD-DIYVVCDIKDEKNVKTCIFRYNTNTYN---GWELITTTESRLSA 505 (557)
T ss_pred ceEEEECCCCCeEeecCC-CCcccccCcEEEE-CC-EEEEEeCCCCCCccceeEEEecCCCCC---CeeEccccCccccc
Confidence 468999999888876653 222 2355544 45 599986432 3567888863 2 2333333331 12
Q ss_pred CceEEcCCCCEEEEEe
Q 024436 158 DNIKRSPRGGFWVGIH 173 (268)
Q Consensus 158 dgia~d~dG~l~va~~ 173 (268)
.|+++- +|+||+...
T Consensus 506 ~~~~~~-~~~iyv~Gg 520 (557)
T PHA02713 506 LHTILH-DNTIMMLHC 520 (557)
T ss_pred ceeEEE-CCEEEEEee
Confidence 355543 678988554
No 262
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=80.54 E-value=15 Score=32.00 Aligned_cols=32 Identities=22% Similarity=0.075 Sum_probs=21.0
Q ss_pred CCCcceEEEccCCCEEEEEecCCcEEEEEEccC
Q 024436 109 LSFPNGVALSEDGNYILLAETTSCRILRYWLKT 141 (268)
Q Consensus 109 ~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~ 141 (268)
.+...-++||||+..|-+++ .++.|.+||+-|
T Consensus 43 ~PQWRkl~WSpD~tlLa~a~-S~G~i~vfdl~g 74 (282)
T PF15492_consen 43 NPQWRKLAWSPDCTLLAYAE-STGTIRVFDLMG 74 (282)
T ss_pred CchheEEEECCCCcEEEEEc-CCCeEEEEeccc
Confidence 33445678888886555554 557788887765
No 263
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=80.49 E-value=62 Score=31.87 Aligned_cols=75 Identities=16% Similarity=0.143 Sum_probs=48.1
Q ss_pred eEEEccCC-----CEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCE-EEEEecCCCcceeeeEeeC
Q 024436 114 GVALSEDG-----NYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGF-WVGIHSRRKGISKLVLSFP 187 (268)
Q Consensus 114 Gia~spdg-----~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l-~va~~~~~~~~~~~v~~~~ 187 (268)
+|+++|.. +.+-|.|+ +..+.-|.++|...+..+ .+.--|.-|..-++|.+ .++..... +..|+
T Consensus 181 si~~~p~sg~G~~di~aV~DW-~qTLSFy~LsG~~Igk~r---~L~FdP~CisYf~NGEy~LiGGsdk~------L~~fT 250 (1081)
T KOG1538|consen 181 SICWNPSSGEGRNDILAVADW-GQTLSFYQLSGKQIGKDR---ALNFDPCCISYFTNGEYILLGGSDKQ------LSLFT 250 (1081)
T ss_pred EEEecCCCCCCccceEEEEec-cceeEEEEecceeecccc---cCCCCchhheeccCCcEEEEccCCCc------eEEEe
Confidence 78998853 36777774 477888888875544322 24345888888889975 44433332 55678
Q ss_pred ccceeeeeccc
Q 024436 188 WIGNVLIKLPI 198 (268)
Q Consensus 188 ~~g~~l~~i~~ 198 (268)
..|-.+..+..
T Consensus 251 R~GvrLGTvg~ 261 (1081)
T KOG1538|consen 251 RDGVRLGTVGE 261 (1081)
T ss_pred ecCeEEeeccc
Confidence 77777776543
No 264
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=80.41 E-value=23 Score=30.61 Aligned_cols=40 Identities=25% Similarity=0.233 Sum_probs=29.2
Q ss_pred CCCEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCC
Q 024436 22 TQGVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQD 63 (268)
Q Consensus 22 ~~~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~ 63 (268)
+|.|+.+.++. +.||+..+.+-..+|...++-.||++..+
T Consensus 195 ~k~vR~fk~~t--QTEG~VaDdEtG~LYIaeEdvaiWK~~Ae 234 (364)
T COG4247 195 TKLVRQFKIPT--QTEGMVADDETGFLYIAEEDVAIWKYEAE 234 (364)
T ss_pred ceeeEeeecCC--cccceeeccccceEEEeeccceeeecccC
Confidence 45677777776 78888888775557777778788887543
No 265
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=80.39 E-value=46 Score=30.33 Aligned_cols=100 Identities=20% Similarity=0.287 Sum_probs=54.7
Q ss_pred cCCCCCeeEEEe--ecCCcceEEEEeCCCCeEEEeecCCCC--cceEEEccCCCEEEEEecC----------CcEEEEEE
Q 024436 73 TSPNRNHISVIL--SGDKTGRLMKYDPATKQVTVLLGNLSF--PNGVALSEDGNYILLAETT----------SCRILRYW 138 (268)
Q Consensus 73 ~~~~~~~~~~~~--~~~~~g~v~~~d~~~~~~~~~~~~~~~--pnGia~spdg~~lyva~~~----------~~~I~~~~ 138 (268)
.++++.++.-.+ .+.....++.+|.++|+... +.+.. ..+++|.+|++.+|.+... ..+|++++
T Consensus 131 ~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~--d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~ 208 (414)
T PF02897_consen 131 VSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLP--DGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHK 208 (414)
T ss_dssp ETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEE--EEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEE
T ss_pred ECCCCCEEEEEecCCCCceEEEEEEECCCCcCcC--CcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEE
Confidence 345555443222 22334568889998885432 22222 2349999999988887643 34688888
Q ss_pred ccCCCCCceeEEEeCCCCCC---ceEEcCCCCE-EEEEecC
Q 024436 139 LKTSKAGTIEIVAQLPGFPD---NIKRSPRGGF-WVGIHSR 175 (268)
Q Consensus 139 ~~~~~~g~~~~~~~l~g~Pd---gia~d~dG~l-~va~~~~ 175 (268)
+..+......+|.. +..+- ++..+.||+. ++.....
T Consensus 209 ~gt~~~~d~lvfe~-~~~~~~~~~~~~s~d~~~l~i~~~~~ 248 (414)
T PF02897_consen 209 LGTPQSEDELVFEE-PDEPFWFVSVSRSKDGRYLFISSSSG 248 (414)
T ss_dssp TTS-GGG-EEEEC--TTCTTSEEEEEE-TTSSEEEEEEESS
T ss_pred CCCChHhCeeEEee-cCCCcEEEEEEecCcccEEEEEEEcc
Confidence 86432222233332 21232 6788899984 4444444
No 266
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=80.15 E-value=27 Score=33.92 Aligned_cols=107 Identities=21% Similarity=0.240 Sum_probs=68.1
Q ss_pred CCcceEEE-CCCCCEEEEEeCCCeEEEEeCCCCe---EEEEE-----EcC-CCC--Ce-------eEEEeecCCcceEEE
Q 024436 34 IGPESLAF-DALGEGPYTGVSDGRIIKWHQDQRR---WLHFA-----RTS-PNR--NH-------ISVILSGDKTGRLMK 94 (268)
Q Consensus 34 ~~P~gia~-~~dG~~l~~~~~~g~I~~~~~~g~~---~~~~~-----~~~-~~~--~~-------~~~~~~~~~~g~v~~ 94 (268)
.+-.++|. .++..+++++--|++|..|+-+... ...+. ..+ +.+ -| ...+..+...+.|..
T Consensus 118 DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~ 197 (735)
T KOG0308|consen 118 DYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRL 197 (735)
T ss_pred chheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEE
Confidence 35667777 6777766677779999999876321 11110 011 111 12 234456666677888
Q ss_pred EeCCCCe-EEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccC
Q 024436 95 YDPATKQ-VTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT 141 (268)
Q Consensus 95 ~d~~~~~-~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~ 141 (268)
|||.+++ +..+.++-..-.-+.+++||+++. +.+..+.|..|++..
T Consensus 198 wDprt~~kimkLrGHTdNVr~ll~~dDGt~~l-s~sSDgtIrlWdLgq 244 (735)
T KOG0308|consen 198 WDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLL-SASSDGTIRLWDLGQ 244 (735)
T ss_pred eccccccceeeeeccccceEEEEEcCCCCeEe-ecCCCceEEeeeccc
Confidence 9998754 344554445556899999998775 667789999999853
No 267
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=79.82 E-value=46 Score=30.02 Aligned_cols=81 Identities=20% Similarity=0.219 Sum_probs=52.7
Q ss_pred CcceEEEEeCCCCeE---EEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcC
Q 024436 88 KTGRLMKYDPATKQV---TVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSP 164 (268)
Q Consensus 88 ~~g~v~~~d~~~~~~---~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~ 164 (268)
..-+||.++..+ .+ +++.+....-|-+.|+. + +.|+.++...|.+|++++ .+-+..+.|.-.|||.-+
T Consensus 297 rsiaVWdm~sps-~it~rrVLvGHrAaVNvVdfd~--k-yIVsASgDRTikvW~~st-----~efvRtl~gHkRGIAClQ 367 (499)
T KOG0281|consen 297 RSIAVWDMASPT-DITLRRVLVGHRAAVNVVDFDD--K-YIVSASGDRTIKVWSTST-----CEFVRTLNGHKRGIACLQ 367 (499)
T ss_pred ceeEEEeccCch-HHHHHHHHhhhhhheeeecccc--c-eEEEecCCceEEEEeccc-----eeeehhhhcccccceehh
Confidence 334555554432 11 23456677788888863 4 668889999999999874 222233667788998876
Q ss_pred -CCCEEEEEecCCC
Q 024436 165 -RGGFWVGIHSRRK 177 (268)
Q Consensus 165 -dG~l~va~~~~~~ 177 (268)
.|++.|+.....+
T Consensus 368 Yr~rlvVSGSSDnt 381 (499)
T KOG0281|consen 368 YRDRLVVSGSSDNT 381 (499)
T ss_pred ccCeEEEecCCCce
Confidence 5678887665543
No 268
>KOG4328 consensus WD40 protein [Function unknown]
Probab=79.62 E-value=53 Score=30.58 Aligned_cols=106 Identities=18% Similarity=0.104 Sum_probs=56.5
Q ss_pred CcceEEECCC-CCEEEEEeCCCeEEEEeCCCCeEEEEEEcCCCCCeeE---------EEeecCCcceEEEEeCCCCeE--
Q 024436 35 GPESLAFDAL-GEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRNHIS---------VILSGDKTGRLMKYDPATKQV-- 102 (268)
Q Consensus 35 ~P~gia~~~d-G~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~~~~~~~---------~~~~~~~~g~v~~~d~~~~~~-- 102 (268)
.-.+|.|.|. -..+|+..-||.|...+.++.....+...-....++. .++....-|..-.+|..++.-
T Consensus 236 ~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~ 315 (498)
T KOG4328|consen 236 PVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEY 315 (498)
T ss_pred cccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccc
Confidence 4556677763 3345666667777666655432221111100000000 112223345444555443322
Q ss_pred EEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEcc
Q 024436 103 TVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLK 140 (268)
Q Consensus 103 ~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~ 140 (268)
..+.-.-..-++|++.|-..+++.+.+..+....||+.
T Consensus 316 ~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R 353 (498)
T KOG4328|consen 316 ENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLR 353 (498)
T ss_pred hhhhhhhcccceeecCCCCchheeecccCcceeeeehh
Confidence 21211223578999999999999999988888888876
No 269
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=79.49 E-value=50 Score=30.24 Aligned_cols=152 Identities=13% Similarity=0.120 Sum_probs=83.9
Q ss_pred CCEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcCCCC--Cee-------EEEeecCCcceEE
Q 024436 23 QGVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNR--NHI-------SVILSGDKTGRLM 93 (268)
Q Consensus 23 ~~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~~~--~~~-------~~~~~~~~~g~v~ 93 (268)
|-|+.-..+.-..-.+++|+...+.+|++-++++|.+-+-..+.-..++....++ -|. ..+......+.|.
T Consensus 95 KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~ 174 (609)
T KOG4227|consen 95 KPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVS 174 (609)
T ss_pred CCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEE
Confidence 5666666665556789999999999999999999988776544211122111111 110 0111223345666
Q ss_pred EEeCCCC----eEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEe--CCCCC------CceE
Q 024436 94 KYDPATK----QVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ--LPGFP------DNIK 161 (268)
Q Consensus 94 ~~d~~~~----~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~--l~g~P------dgia 161 (268)
.||.... +...++.-...-.-+.|.|..-.|+.++..++.+-+|++.-.. ..++.. ..++| -|..
T Consensus 175 ~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~---~~~~~~~~~~~L~~~~~~~M~~~ 251 (609)
T KOG4227|consen 175 FIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQA---RPVYQRSMFKGLPQENTEWMGSL 251 (609)
T ss_pred EEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeecccc---chHHhhhccccCcccchhhhhee
Confidence 6654321 1122222222334677888877777777777777777765211 111111 11233 3677
Q ss_pred EcCCCCEEEEEecCCC
Q 024436 162 RSPRGGFWVGIHSRRK 177 (268)
Q Consensus 162 ~d~dG~l~va~~~~~~ 177 (268)
+.+.|+-+.+....-+
T Consensus 252 ~~~~G~Q~msiRR~~~ 267 (609)
T KOG4227|consen 252 WSPSGNQFMSIRRGKC 267 (609)
T ss_pred eCCCCCeehhhhccCC
Confidence 8888887666655444
No 270
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=79.40 E-value=8 Score=22.61 Aligned_cols=40 Identities=15% Similarity=0.129 Sum_probs=21.6
Q ss_pred CCEEEEEEcCCCCceeceEEEEEeCCEEEEeeCCCCeEEEEeCCC
Q 024436 224 GNVLEILEEIGRKMWRSISEVEEKDGNLWIGSVNMPYAGLYNYSS 268 (268)
Q Consensus 224 G~~~~~~~~~~g~~~~~~s~~~~~~g~Lyv~s~~~~~v~~~~~~~ 268 (268)
|+++..+..+ +.. .++.+..+++||+++. +..+..+|.+|
T Consensus 1 G~~~W~~~~~-~~~---~~~~~v~~g~vyv~~~-dg~l~ald~~t 40 (40)
T PF13570_consen 1 GKVLWSYDTG-GPI---WSSPAVAGGRVYVGTG-DGNLYALDAAT 40 (40)
T ss_dssp S-EEEEEE-S-S------S--EECTSEEEEE-T-TSEEEEEETT-
T ss_pred CceeEEEECC-CCc---CcCCEEECCEEEEEcC-CCEEEEEeCCC
Confidence 4555555543 222 2344667899999998 66777777764
No 271
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=78.52 E-value=2.4 Score=38.06 Aligned_cols=87 Identities=10% Similarity=0.103 Sum_probs=53.3
Q ss_pred cCCcceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCc-eeEEEeCCCCCCceEEcC
Q 024436 86 GDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGT-IEIVAQLPGFPDNIKRSP 164 (268)
Q Consensus 86 ~~~~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~-~~~~~~l~g~Pdgia~d~ 164 (268)
...++.|+.||..+++...-.-.-..+|+|+|+|. ...|++....+.+|.||+.. +.. ..++.+--.-.-.+.+.|
T Consensus 206 ~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPe-afnF~~a~ED~nlY~~DmR~--l~~p~~v~~dhvsAV~dVdfsp 282 (433)
T KOG0268|consen 206 CASDRSIVLYDLRQASPLKKVILTMRTNTICWNPE-AFNFVAANEDHNLYTYDMRN--LSRPLNVHKDHVSAVMDVDFSP 282 (433)
T ss_pred eccCCceEEEecccCCccceeeeeccccceecCcc-ccceeeccccccceehhhhh--hcccchhhcccceeEEEeccCC
Confidence 34567899999876654332223467999999995 47999988999999999862 111 111111101123455667
Q ss_pred CCCEEEEEecC
Q 024436 165 RGGFWVGIHSR 175 (268)
Q Consensus 165 dG~l~va~~~~ 175 (268)
-|.=+|+..-.
T Consensus 283 tG~EfvsgsyD 293 (433)
T KOG0268|consen 283 TGQEFVSGSYD 293 (433)
T ss_pred Ccchhcccccc
Confidence 77655544433
No 272
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=78.28 E-value=8.5 Score=33.26 Aligned_cols=49 Identities=27% Similarity=0.271 Sum_probs=30.8
Q ss_pred CcceEEEEeCCCCe-EEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEc
Q 024436 88 KTGRLMKYDPATKQ-VTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWL 139 (268)
Q Consensus 88 ~~g~v~~~d~~~~~-~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~ 139 (268)
..++||.+ .+.. +.++..+-..-|.+||+||-. |..+.+...+|.-|++
T Consensus 273 ~RiRVysw--rtl~pLAVLkyHsagvn~vAfspd~~-lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 273 HRIRVYSW--RTLNPLAVLKYHSAGVNAVAFSPDCE-LMAAASKDARISLWKL 322 (323)
T ss_pred CcEEEEEe--ccCCchhhhhhhhcceeEEEeCCCCc-hhhhccCCceEEeeec
Confidence 33444444 3333 233333445578999999954 6677778889888864
No 273
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.97 E-value=35 Score=31.12 Aligned_cols=61 Identities=21% Similarity=0.358 Sum_probs=38.6
Q ss_pred CCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeC-CCCCCceEEcCCCCEEEE
Q 024436 108 NLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL-PGFPDNIKRSPRGGFWVG 171 (268)
Q Consensus 108 ~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l-~g~Pdgia~d~dG~l~va 171 (268)
....-..+++|+||+++-+ .+.++.|..|+... +.....+.+. .+...++++.||-+....
T Consensus 280 ~~~siSsl~VS~dGkf~Al-GT~dGsVai~~~~~--lq~~~~vk~aH~~~VT~ltF~Pdsr~~~s 341 (398)
T KOG0771|consen 280 RFKSISSLAVSDDGKFLAL-GTMDGSVAIYDAKS--LQRLQYVKEAHLGFVTGLTFSPDSRYLAS 341 (398)
T ss_pred ccCcceeEEEcCCCcEEEE-eccCCcEEEEEece--eeeeEeehhhheeeeeeEEEcCCcCcccc
Confidence 3445567999999986654 46688999988652 2112222222 245778888888765554
No 274
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=77.92 E-value=61 Score=30.33 Aligned_cols=103 Identities=17% Similarity=0.231 Sum_probs=66.0
Q ss_pred cceEEECCCCCEEEEEeCCCeEEEEeC-CCCeEEEEEEcCCCC---CeeE--EEeecCCcc--eEEEEeCCCCeEEEeec
Q 024436 36 PESLAFDALGEGPYTGVSDGRIIKWHQ-DQRRWLHFARTSPNR---NHIS--VILSGDKTG--RLMKYDPATKQVTVLLG 107 (268)
Q Consensus 36 P~gia~~~dG~~l~~~~~~g~I~~~~~-~g~~~~~~~~~~~~~---~~~~--~~~~~~~~g--~v~~~d~~~~~~~~~~~ 107 (268)
-..+-...+|+.+.++..|+++..|+. .|..-..|...+... .|+. .+......+ .|++++.+ +-+..+..
T Consensus 279 I~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~-~P~~t~~G 357 (524)
T KOG0273|consen 279 IFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGED-RPVKTFIG 357 (524)
T ss_pred eEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCC-Ccceeeec
Confidence 356677788887788778899888886 343323333332221 2322 222334455 45667665 44555666
Q ss_pred CCCCcceEEEccCCCEEEEEecCCcEEEEEEcc
Q 024436 108 NLSFPNGVALSEDGNYILLAETTSCRILRYWLK 140 (268)
Q Consensus 108 ~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~ 140 (268)
+-.--|+|.|+|.|. |..+-+....+..|...
T Consensus 358 H~g~V~alk~n~tg~-LLaS~SdD~TlkiWs~~ 389 (524)
T KOG0273|consen 358 HHGEVNALKWNPTGS-LLASCSDDGTLKIWSMG 389 (524)
T ss_pred ccCceEEEEECCCCc-eEEEecCCCeeEeeecC
Confidence 666779999999996 66788888888888764
No 275
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=77.38 E-value=78 Score=31.28 Aligned_cols=132 Identities=13% Similarity=0.071 Sum_probs=73.5
Q ss_pred EeecCCcceEEEEeCCCCeEEEeecCC---CCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCC-ceeEEE-e----C
Q 024436 83 ILSGDKTGRLMKYDPATKQVTVLLGNL---SFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAG-TIEIVA-Q----L 153 (268)
Q Consensus 83 ~~~~~~~g~v~~~d~~~~~~~~~~~~~---~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g-~~~~~~-~----l 153 (268)
....++.-++||++.+-.+...+.... ..--+++++..+-.++++-+....+..|++...+-. ..-.+. + .
T Consensus 382 t~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~a 461 (775)
T KOG0319|consen 382 TGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERA 461 (775)
T ss_pred EecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHh
Confidence 334456667889954422222222222 223368888888889999999999999998752111 111121 0 0
Q ss_pred -CCCCCceEEcCCCCEEEEEecCCC-cceeeeEeeCccceeeeeccccceeeeeeccccCCCcEEEEEECCCCCEEEEEE
Q 024436 154 -PGFPDNIKRSPRGGFWVGIHSRRK-GISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILE 231 (268)
Q Consensus 154 -~g~Pdgia~d~dG~l~va~~~~~~-~~~~~v~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 231 (268)
..--+++++.|+..|+.+.....+ + |+..+ +.+++..+ .+.... .+-+.+.+.-+++.+-.
T Consensus 462 HdKdIN~Vaia~ndkLiAT~SqDktaK----iW~le-~~~l~~vL-----------sGH~RG-vw~V~Fs~~dq~laT~S 524 (775)
T KOG0319|consen 462 HDKDINCVAIAPNDKLIATGSQDKTAK----IWDLE-QLRLLGVL-----------SGHTRG-VWCVSFSKNDQLLATCS 524 (775)
T ss_pred hcccccceEecCCCceEEeccccccee----eeccc-CceEEEEe-----------eCCccc-eEEEEeccccceeEecc
Confidence 124679999999888877665532 3 22222 33333322 223333 55666666655555543
No 276
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=77.20 E-value=55 Score=29.44 Aligned_cols=52 Identities=19% Similarity=0.272 Sum_probs=32.9
Q ss_pred CCcceEEEEeCCCCeEE--EeecC-CCCcceEEEccCCCEEEEEecCCcEEEEEEcc
Q 024436 87 DKTGRLMKYDPATKQVT--VLLGN-LSFPNGVALSEDGNYILLAETTSCRILRYWLK 140 (268)
Q Consensus 87 ~~~g~v~~~d~~~~~~~--~~~~~-~~~pnGia~spdg~~lyva~~~~~~I~~~~~~ 140 (268)
..+|.|+.+|+++++.. ....+ ....++-.+..||+ ||+.+.. ++++.++.+
T Consensus 75 ~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~-g~~y~ld~~ 129 (370)
T COG1520 75 TRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWD-GKLYALDAS 129 (370)
T ss_pred cCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEeccc-ceEEEEECC
Confidence 45679999999987643 11111 12344444444885 9988765 488999984
No 277
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=76.74 E-value=12 Score=31.67 Aligned_cols=110 Identities=17% Similarity=0.258 Sum_probs=50.8
Q ss_pred EEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCC---CeEEE-EEEcC-CCC-CeeEEEeecCCcceEEEEeCCC
Q 024436 26 VQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQ---RRWLH-FARTS-PNR-NHISVILSGDKTGRLMKYDPAT 99 (268)
Q Consensus 26 ~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g---~~~~~-~~~~~-~~~-~~~~~~~~~~~~g~v~~~d~~~ 99 (268)
..|.-++...=..|.++|.|- +|+-..+|+++|..+.. ..|.. .+... ... +-...++. .++|.||.++++
T Consensus 73 ~~Ig~g~W~~F~~i~~d~~G~-LYaV~~~G~lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~~vfa-~~~GvLY~i~~d- 149 (229)
T PF14517_consen 73 KQIGDGGWNSFKFIFFDPTGV-LYAVTPDGKLYRHPRPTNGSDNWIGGSGKKIGGTGWNDFDAVFA-GPNGVLYAITPD- 149 (229)
T ss_dssp EEEE-S-GGG-SEEEE-TTS--EEEEETT-EEEEES---STT--HHH-HSEEEE-SSGGGEEEEEE--TTS-EEEEETT-
T ss_pred cccccCcccceeEEEecCCcc-EEEeccccceeeccCCCccCcchhhccceecccCCCccceEEEe-CCCccEEEEcCC-
Confidence 455555444556899999998 55556689999986422 22211 01110 010 11112222 456677777766
Q ss_pred CeEEE----------------ee--cCCCCcceEEEccCCCEEEEEecCCcEEEEEEcc
Q 024436 100 KQVTV----------------LL--GNLSFPNGVALSEDGNYILLAETTSCRILRYWLK 140 (268)
Q Consensus 100 ~~~~~----------------~~--~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~ 140 (268)
+.+.+ +. .+...+.-|.++|+| .||..+ .++.|+|+...
T Consensus 150 g~~~~~~~p~~~~~~W~~~s~~v~~~gw~~~~~i~~~~~g-~L~~V~-~~G~lyr~~~p 206 (229)
T PF14517_consen 150 GRLYRRYRPDGGSDRWLSGSGLVGGGGWDSFHFIFFSPDG-NLWAVK-SNGKLYRGRPP 206 (229)
T ss_dssp E-EEEE---SSTT--HHHH-EEEESSSGGGEEEEEE-TTS--EEEE--ETTEEEEES--
T ss_pred CceEEeCCCCCCCCccccccceeccCCcccceEEeeCCCC-cEEEEe-cCCEEeccCCc
Confidence 42222 11 222346679999998 488774 45788877643
No 278
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=76.44 E-value=70 Score=30.21 Aligned_cols=52 Identities=12% Similarity=0.084 Sum_probs=33.8
Q ss_pred EEEEEECC-CCCEEEEEEcCCCC-------ceeceEEEEEeCCEEEEeeCCCCeEEEEeCCC
Q 024436 215 GMAMRISE-QGNVLEILEEIGRK-------MWRSISEVEEKDGNLWIGSVNMPYAGLYNYSS 268 (268)
Q Consensus 215 ~~~~~~~~-~G~~~~~~~~~~g~-------~~~~~s~~~~~~g~Lyv~s~~~~~v~~~~~~~ 268 (268)
+.+..+|. +|+++........+ .. ..+..+..++.||+++ .+.+|.-+|.++
T Consensus 366 G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~-~~~~~~~~g~~v~~g~-~dG~l~ald~~t 425 (488)
T cd00216 366 GGLAALDPKTGKVVWEKREGTIRDSWNIGFPH-WGGSLATAGNLVFAGA-ADGYFRAFDATT 425 (488)
T ss_pred eEEEEEeCCCCcEeeEeeCCccccccccCCcc-cCcceEecCCeEEEEC-CCCeEEEEECCC
Confidence 77889997 59988877653111 11 1233456778999998 566777777654
No 279
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=76.17 E-value=52 Score=28.63 Aligned_cols=127 Identities=17% Similarity=0.181 Sum_probs=65.4
Q ss_pred EECCCCCEEEEEeCCCeEEEEeCCCCe--EE------EEE--EcCCCCCeeEEEeecCCcceEEEEeCCCCeEEEee---
Q 024436 40 AFDALGEGPYTGVSDGRIIKWHQDQRR--WL------HFA--RTSPNRNHISVILSGDKTGRLMKYDPATKQVTVLL--- 106 (268)
Q Consensus 40 a~~~dG~~l~~~~~~g~I~~~~~~g~~--~~------~~~--~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~--- 106 (268)
..++++.++|++.+|+..+.+|+.... +. .|+ ...++...++.. .-.|+|.++.++++...+++
T Consensus 100 ~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a---~t~G~vlavt~~~~~~~~~w~~~ 176 (354)
T KOG4649|consen 100 QCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAA---ITAGAVLAVTKNPYSSTEFWAAT 176 (354)
T ss_pred EEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEE---eccceEEEEccCCCCcceehhhh
Confidence 689999999999999999999876432 11 011 011111112211 23578888888766544443
Q ss_pred ---cCCCCcc----eEEE-ccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEe-CCCCC--CceEEcCCCCEEEEEecC
Q 024436 107 ---GNLSFPN----GVAL-SEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-LPGFP--DNIKRSPRGGFWVGIHSR 175 (268)
Q Consensus 107 ---~~~~~pn----Gia~-spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~-l~g~P--dgia~d~dG~l~va~~~~ 175 (268)
.-+..|- .+.. .=||..+-+++++ ..||++...|+ .|.. -...| +-|.+-.++-++..+...
T Consensus 177 ~~~PiF~splcv~~sv~i~~VdG~l~~f~~sG-~qvwr~~t~Gp------If~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ 249 (354)
T KOG4649|consen 177 RFGPIFASPLCVGSSVIITTVDGVLTSFDESG-RQVWRPATKGP------IFMEPCESRPSCQQISLENENCFCAPLPIA 249 (354)
T ss_pred cCCccccCceeccceEEEEEeccEEEEEcCCC-cEEEeecCCCc------eecccccCCCcceEEEEecCCeEEEecccc
Confidence 1122221 1222 2367655555443 66777765542 3332 01123 345555555555555444
Q ss_pred C
Q 024436 176 R 176 (268)
Q Consensus 176 ~ 176 (268)
+
T Consensus 250 g 250 (354)
T KOG4649|consen 250 G 250 (354)
T ss_pred c
Confidence 3
No 280
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=76.16 E-value=69 Score=30.00 Aligned_cols=150 Identities=13% Similarity=0.121 Sum_probs=80.9
Q ss_pred ceEEECCCCCEEEEEeCCCeEEEE-eCCCCeEEEEEEcCCCCCee----------EEEeecCCcceEEEEeCCCC-eEEE
Q 024436 37 ESLAFDALGEGPYTGVSDGRIIKW-HQDQRRWLHFARTSPNRNHI----------SVILSGDKTGRLMKYDPATK-QVTV 104 (268)
Q Consensus 37 ~gia~~~dG~~l~~~~~~g~I~~~-~~~g~~~~~~~~~~~~~~~~----------~~~~~~~~~g~v~~~d~~~~-~~~~ 104 (268)
+-+-|.|+++..++...|+++.++ +.++... .+...+...|+ ..++++.=+|.|-.||..+. ....
T Consensus 114 ~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v--~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~ 191 (487)
T KOG0310|consen 114 HVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV--QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVV 191 (487)
T ss_pred eEEEecccCCeEEEecCCCceEEEEEcCCcEE--EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeE
Confidence 334567777767666666666654 5665532 22222211111 12345555677777776643 2222
Q ss_pred eecCCCCcceEEEccCCCEEEEEecCCcEEEEEEcc-CCCC-CceeEEEeCCCCCCceEEcCCCC-EEEEEecCCCccee
Q 024436 105 LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLK-TSKA-GTIEIVAQLPGFPDNIKRSPRGG-FWVGIHSRRKGISK 181 (268)
Q Consensus 105 ~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~-~~~~-g~~~~~~~l~g~Pdgia~d~dG~-l~va~~~~~~~~~~ 181 (268)
-.....--..+.+-|.|. ++++. +.+.|.+||+. |+++ ..... .. .....+++..++. |+-+.-.++
T Consensus 192 elnhg~pVe~vl~lpsgs-~iasA-gGn~vkVWDl~~G~qll~~~~~--H~-KtVTcL~l~s~~~rLlS~sLD~~----- 261 (487)
T KOG0310|consen 192 ELNHGCPVESVLALPSGS-LIASA-GGNSVKVWDLTTGGQLLTSMFN--HN-KTVTCLRLASDSTRLLSGSLDRH----- 261 (487)
T ss_pred EecCCCceeeEEEcCCCC-EEEEc-CCCeEEEEEecCCceehhhhhc--cc-ceEEEEEeecCCceEeecccccc-----
Confidence 233334345677778886 55554 55789999987 4321 11110 01 1245677777775 555555554
Q ss_pred eeEeeC-ccceeeeecccc
Q 024436 182 LVLSFP-WIGNVLIKLPID 199 (268)
Q Consensus 182 ~v~~~~-~~g~~l~~i~~~ 199 (268)
|..|. ..-+++..+..|
T Consensus 262 -VKVfd~t~~Kvv~s~~~~ 279 (487)
T KOG0310|consen 262 -VKVFDTTNYKVVHSWKYP 279 (487)
T ss_pred -eEEEEccceEEEEeeecc
Confidence 66775 455666666655
No 281
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=75.90 E-value=76 Score=30.40 Aligned_cols=101 Identities=17% Similarity=0.153 Sum_probs=61.2
Q ss_pred EEEEEEccCCCCCceeEEE--eCCC-CCCceEEcC-CCCEEEEEecCCCcceeeeEeeCccceeeeeccccceeeeeecc
Q 024436 133 RILRYWLKTSKAGTIEIVA--QLPG-FPDNIKRSP-RGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLV 208 (268)
Q Consensus 133 ~I~~~~~~~~~~g~~~~~~--~l~g-~Pdgia~d~-dG~l~va~~~~~~~~~~~v~~~~~~g~~l~~i~~~~~~~~~~~~ 208 (268)
.|++|+++++. .+-.+ ..|| .-+..++|. +|+|-|+......+ .. .
T Consensus 249 ~I~kf~~~~~~---~~y~~sg~V~G~llnqFsmdE~~G~LRvaTT~~~~~-~~----~---------------------- 298 (521)
T PF09826_consen 249 TIYKFALDGGK---IEYVGSGSVPGYLLNQFSMDEYDGYLRVATTSGNWW-WD----S---------------------- 298 (521)
T ss_pred EEEEEEccCCc---EEEEEEEEECcEEcccccEeccCCEEEEEEecCccc-cc----C----------------------
Confidence 67888887633 22222 2455 356788887 56777777655310 00 0
Q ss_pred ccCCCcEEEEEECCCCCEEEEEEcC-CCCceeceEEEEEeCCEEEEeeCCC-CeEEEEeCC
Q 024436 209 KLSGNGGMAMRISEQGNVLEILEEI-GRKMWRSISEVEEKDGNLWIGSVNM-PYAGLYNYS 267 (268)
Q Consensus 209 ~~~~~~~~~~~~~~~G~~~~~~~~~-~g~~~~~~s~~~~~~g~Lyv~s~~~-~~v~~~~~~ 267 (268)
..... ..+.++|.+.+++-.+.+- .|+. |-++-..+++.|+-.+.. +=+-+||++
T Consensus 299 ~~~s~-N~lyVLD~~L~~vG~l~~la~gE~---IysvRF~Gd~~Y~VTFrqvDPLfviDLs 355 (521)
T PF09826_consen 299 EDTSS-NNLYVLDEDLKIVGSLEGLAPGER---IYSVRFMGDRAYLVTFRQVDPLFVIDLS 355 (521)
T ss_pred CCCce-EEEEEECCCCcEeEEccccCCCce---EEEEEEeCCeEEEEEEeecCceEEEECC
Confidence 00111 4578888888888777653 2333 567778888888877766 666666665
No 282
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=74.91 E-value=80 Score=30.16 Aligned_cols=121 Identities=15% Similarity=0.103 Sum_probs=71.3
Q ss_pred cceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEe-cCCcEEEEEEccCCCCCceeEEEeCCCCCCc-eEEcCCC
Q 024436 89 TGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAE-TTSCRILRYWLKTSKAGTIEIVAQLPGFPDN-IKRSPRG 166 (268)
Q Consensus 89 ~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~-~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdg-ia~d~dG 166 (268)
...+|.++.++.+..+-...-.--..+.|+|+|+.+-|+- ..-.++..|++++ .++.+++-.|++ +-+.|.|
T Consensus 250 Eq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~------~~v~df~egpRN~~~fnp~g 323 (566)
T KOG2315|consen 250 EQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG------KPVFDFPEGPRNTAFFNPHG 323 (566)
T ss_pred cceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC------CEeEeCCCCCccceEECCCC
Confidence 4578888777333333222222346899999998666654 3446889999875 233455445765 6779999
Q ss_pred CE-EEEEecCCCcceeeeEeeCccceeeeeccccceeeeeeccccCCCcEEEEEECCCCCEEEEEE
Q 024436 167 GF-WVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKIHSSLVKLSGNGGMAMRISEQGNVLEILE 231 (268)
Q Consensus 167 ~l-~va~~~~~~~~~~~v~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 231 (268)
++ .+|.+++-..-+++.. -..++.+.++... . ..+..-.|||+...+..
T Consensus 324 ~ii~lAGFGNL~G~mEvwD--v~n~K~i~~~~a~------------~--tt~~eW~PdGe~flTAT 373 (566)
T KOG2315|consen 324 NIILLAGFGNLPGDMEVWD--VPNRKLIAKFKAA------------N--TTVFEWSPDGEYFLTAT 373 (566)
T ss_pred CEEEEeecCCCCCceEEEe--ccchhhccccccC------------C--ceEEEEcCCCcEEEEEe
Confidence 95 5577776432333211 1335555544322 1 34667777887766544
No 283
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.66 E-value=69 Score=29.31 Aligned_cols=52 Identities=13% Similarity=0.228 Sum_probs=29.0
Q ss_pred CcceEEEEe-CCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccC
Q 024436 88 KTGRLMKYD-PATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT 141 (268)
Q Consensus 88 ~~g~v~~~d-~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~ 141 (268)
.+|.+..++ |+-..+....+.-..-+.+.|+|||+.| ++=+. ....+|+.+.
T Consensus 164 ~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~l-asig~-d~~~VW~~~~ 216 (398)
T KOG0771|consen 164 TDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFL-ASIGA-DSARVWSVNT 216 (398)
T ss_pred ccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEE-EEecC-CceEEEEecc
Confidence 445555555 4422222222334456799999999854 44333 3667777764
No 284
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=74.40 E-value=22 Score=33.11 Aligned_cols=113 Identities=11% Similarity=0.136 Sum_probs=73.6
Q ss_pred EEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCC-CCeEEEEEEcCC--CCCeeE--EEeecCCcceEEEEeCCCCe
Q 024436 27 QYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQD-QRRWLHFARTSP--NRNHIS--VILSGDKTGRLMKYDPATKQ 101 (268)
Q Consensus 27 ~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~-g~~~~~~~~~~~--~~~~~~--~~~~~~~~g~v~~~d~~~~~ 101 (268)
.+.++.+ +|+.+-+..+|+.+..+-..|-|..+|-- ++...++-.... +-.|+. .+++......+|.||..+-+
T Consensus 124 ~L~l~eF-GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtE 202 (545)
T KOG1272|consen 124 DLSLPEF-GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTE 202 (545)
T ss_pred ccccccc-CCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcE
Confidence 3455543 79999999999999988888999888743 333333321111 111211 12333456789999988444
Q ss_pred EEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCC
Q 024436 102 VTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS 142 (268)
Q Consensus 102 ~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~ 142 (268)
+..+- .....+-+.|-|-- +|.++.+.++-+...|+..+
T Consensus 203 lHClk-~~~~v~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~G 241 (545)
T KOG1272|consen 203 LHCLK-RHIRVARLEFLPYH-FLLVAASEAGFLKYQDVSTG 241 (545)
T ss_pred Eeehh-hcCchhhhcccchh-heeeecccCCceEEEeechh
Confidence 44443 33456788999975 89999988888888888743
No 285
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=73.59 E-value=74 Score=30.49 Aligned_cols=125 Identities=16% Similarity=0.201 Sum_probs=63.0
Q ss_pred cceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcCCCCCeeEE-----EeecCCcceEEEEeCCCCeEEEeecCCC
Q 024436 36 PESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRNHISV-----ILSGDKTGRLMKYDPATKQVTVLLGNLS 110 (268)
Q Consensus 36 P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~~~~~~~~-----~~~~~~~g~v~~~d~~~~~~~~~~~~~~ 110 (268)
-.+.++||+..++|+...+..- .+..+.. . ..++..|+.. -......|.|..+|+.+|++.=... ..
T Consensus 389 W~~~A~Dp~~g~~yvp~~~~~~-~~~~~~~--~----~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~-~~ 460 (527)
T TIGR03075 389 WQPMAYSPKTGLFYVPANEVCM-DYEPEKV--S----YKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHK-ED 460 (527)
T ss_pred CCCceECCCCCEEEEecccccc-ccccccc--c----cCCCCceeccccccCCCCCCCceeEEEEeCCCCceeeEec-CC
Confidence 4558999999999986654211 1111100 0 0001111110 0112346889999999987643221 12
Q ss_pred Cc--ceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEE-eCCCCCC--ceEEcCCCCEEEEEec
Q 024436 111 FP--NGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVA-QLPGFPD--NIKRSPRGGFWVGIHS 174 (268)
Q Consensus 111 ~p--nGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~-~l~g~Pd--gia~d~dG~l~va~~~ 174 (268)
.| -+.... .|..+|+ .+.++.++.||.++++ .++. ++++... =|....+|+.||+...
T Consensus 461 ~p~~~~~l~t-~g~lvf~-g~~~G~l~a~D~~TGe----~lw~~~~g~~~~a~P~ty~~~G~qYv~~~~ 523 (527)
T TIGR03075 461 FPLWGGVLAT-AGDLVFY-GTLEGYFKAFDAKTGE----ELWKFKTGSGIVGPPVTYEQDGKQYVAVLS 523 (527)
T ss_pred CCCCCcceEE-CCcEEEE-ECCCCeEEEEECCCCC----EeEEEeCCCCceecCEEEEeCCEEEEEEEe
Confidence 22 233223 4444444 5667899999987532 2222 2432111 1333357898887653
No 286
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=73.30 E-value=17 Score=33.92 Aligned_cols=87 Identities=16% Similarity=0.233 Sum_probs=50.9
Q ss_pred EeecCCcceEEEEeCCCCeEEEeec---CCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCc
Q 024436 83 ILSGDKTGRLMKYDPATKQVTVLLG---NLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDN 159 (268)
Q Consensus 83 ~~~~~~~g~v~~~d~~~~~~~~~~~---~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdg 159 (268)
+..+..+|.|-.|.|...+ .+.. ...--++||++++|+++ +|....+++.+||+..-. ....+. .|-....
T Consensus 266 ih~GhsnGtVSlWSP~ske--PLvKiLcH~g~V~siAv~~~G~YM-aTtG~Dr~~kIWDlR~~~--ql~t~~-tp~~a~~ 339 (545)
T KOG1272|consen 266 IHLGHSNGTVSLWSPNSKE--PLVKILCHRGPVSSIAVDRGGRYM-ATTGLDRKVKIWDLRNFY--QLHTYR-TPHPASN 339 (545)
T ss_pred EEEcCCCceEEecCCCCcc--hHHHHHhcCCCcceEEECCCCcEE-eecccccceeEeeecccc--ccceee-cCCCccc
Confidence 3455667777777776332 2222 22334799999999855 566677899999987421 111111 1323456
Q ss_pred eEEcCCCCEEEEEecCC
Q 024436 160 IKRSPRGGFWVGIHSRR 176 (268)
Q Consensus 160 ia~d~dG~l~va~~~~~ 176 (268)
++++..|.| .+.++.+
T Consensus 340 ls~SqkglL-A~~~G~~ 355 (545)
T KOG1272|consen 340 LSLSQKGLL-ALSYGDH 355 (545)
T ss_pred cccccccce-eeecCCe
Confidence 788776654 4444443
No 287
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=72.39 E-value=78 Score=28.89 Aligned_cols=58 Identities=17% Similarity=0.199 Sum_probs=43.9
Q ss_pred eecCCcceEEEEeCCCCeEEEe----ecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccC
Q 024436 84 LSGDKTGRLMKYDPATKQVTVL----LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT 141 (268)
Q Consensus 84 ~~~~~~g~v~~~d~~~~~~~~~----~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~ 141 (268)
+++++...|+.+.+.+|.+.+- ..+-..-.+|++||..+.++.+-+..+.|..||+..
T Consensus 228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs 289 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRS 289 (440)
T ss_pred ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecC
Confidence 4555666778887777766542 223344569999999999999999999999999874
No 288
>PHA03098 kelch-like protein; Provisional
Probab=72.20 E-value=91 Score=29.59 Aligned_cols=97 Identities=19% Similarity=0.130 Sum_probs=50.8
Q ss_pred CCCCEEEEEeC-----CCeEEEEeCCCCeEEEEEEcCCCC---------CeeEEEee----cCCcceEEEEeCCCCeEEE
Q 024436 43 ALGEGPYTGVS-----DGRIIKWHQDQRRWLHFARTSPNR---------NHISVILS----GDKTGRLMKYDPATKQVTV 104 (268)
Q Consensus 43 ~dG~~l~~~~~-----~g~I~~~~~~g~~~~~~~~~~~~~---------~~~~~~~~----~~~~g~v~~~d~~~~~~~~ 104 (268)
-+|++|+.+-. ...+.++++....|...+.....+ ..++.+.. ......++++|+.+++++.
T Consensus 341 ~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~ 420 (534)
T PHA03098 341 FNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSK 420 (534)
T ss_pred ECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeee
Confidence 35666655432 245677788777776544322112 11222211 0112568999999888876
Q ss_pred eecCCCCcc--eEEEccCCCEEEEEecCC--------cEEEEEEccC
Q 024436 105 LLGNLSFPN--GVALSEDGNYILLAETTS--------CRILRYWLKT 141 (268)
Q Consensus 105 ~~~~~~~pn--Gia~spdg~~lyva~~~~--------~~I~~~~~~~ 141 (268)
+.. +..|. .-+..-++ .||+....+ ..+++|++..
T Consensus 421 ~~~-~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~v~~yd~~~ 465 (534)
T PHA03098 421 GSP-LPISHYGGCAIYHDG-KIYVIGGISYIDNIKVYNIVESYNPVT 465 (534)
T ss_pred cCC-CCccccCceEEEECC-EEEEECCccCCCCCcccceEEEecCCC
Confidence 542 22221 12223344 699875432 2488888764
No 289
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=71.84 E-value=1.1e+02 Score=30.58 Aligned_cols=127 Identities=20% Similarity=0.263 Sum_probs=78.0
Q ss_pred cceEEECCCCCEEEEEeCCCeEEEEeCCC-C------eEEEEEE-------cCCCCCeeEEEeecCCcceEEEEeCCCCe
Q 024436 36 PESLAFDALGEGPYTGVSDGRIIKWHQDQ-R------RWLHFAR-------TSPNRNHISVILSGDKTGRLMKYDPATKQ 101 (268)
Q Consensus 36 P~gia~~~dG~~l~~~~~~g~I~~~~~~g-~------~~~~~~~-------~~~~~~~~~~~~~~~~~g~v~~~d~~~~~ 101 (268)
-...+++|.++.+.++..+|||+.|..-| . ....+-. -+.++.| ++++...+-+.++..+|++
T Consensus 208 ~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~---LlSGG~E~VLv~Wq~~T~~ 284 (792)
T KOG1963|consen 208 ITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAY---LLSGGREGVLVLWQLETGK 284 (792)
T ss_pred ceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCce---EeecccceEEEEEeecCCC
Confidence 46689999999888888899999886544 1 1111110 0122222 2356667777788888777
Q ss_pred EEEeecCCCCc-ceEEEccCCCEEEEEecCCcEEEEEEccCCC----CCceeEE----E-eCCCCCCceEEcCCCC
Q 024436 102 VTVLLGNLSFP-NGVALSEDGNYILLAETTSCRILRYWLKTSK----AGTIEIV----A-QLPGFPDNIKRSPRGG 167 (268)
Q Consensus 102 ~~~~~~~~~~p-nGia~spdg~~lyva~~~~~~I~~~~~~~~~----~g~~~~~----~-~l~g~Pdgia~d~dG~ 167 (268)
+++..-+..| -+|++|||++ +|..-...+.|......+-. ....... . ...+.+.++++||.-+
T Consensus 285 -kqfLPRLgs~I~~i~vS~ds~-~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~ 358 (792)
T KOG1963|consen 285 -KQFLPRLGSPILHIVVSPDSD-LYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTN 358 (792)
T ss_pred -cccccccCCeeEEEEEcCCCC-eEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCC
Confidence 4554445444 6999999996 77777778888887763210 0001111 0 1125688999999433
No 290
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=71.63 E-value=74 Score=28.33 Aligned_cols=148 Identities=18% Similarity=0.212 Sum_probs=78.8
Q ss_pred HhhhhcCCCEEEEecCCC----------CCcceEEECCCCC--EEEEEeCCCeEEEEeCCCCeEEEEEEc----------
Q 024436 16 LFINSSTQGVVQYQIEGA----------IGPESLAFDALGE--GPYTGVSDGRIIKWHQDQRRWLHFART---------- 73 (268)
Q Consensus 16 ~~~~~~~~~~~~i~~~~~----------~~P~gia~~~dG~--~l~~~~~~g~I~~~~~~g~~~~~~~~~---------- 73 (268)
+-+-|+-..|+.++++.- ..-+.+-|.+.-. -+.++..||.|..|+.+. |......
T Consensus 56 ~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~--W~~~~slK~H~~~Vt~l 133 (362)
T KOG0294|consen 56 VASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS--WELLKSLKAHKGQVTDL 133 (362)
T ss_pred EeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCC--eEEeeeeccccccccee
Confidence 334555567777776631 1233444444431 256667888888877542 3222111
Q ss_pred --CCCCCeeEEEeecCCcceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEE
Q 024436 74 --SPNRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVA 151 (268)
Q Consensus 74 --~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~ 151 (268)
-|..... ++-..++.+-.++.-+|+...+..--..|.-+-|+|.|.+.|+.- .++|-.|.++.. .+|.
T Consensus 134 siHPS~KLA---LsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~--~~~i~i~q~d~A-----~v~~ 203 (362)
T KOG0294|consen 134 SIHPSGKLA---LSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSG--RNKIDIYQLDNA-----SVFR 203 (362)
T ss_pred EecCCCceE---EEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEe--ccEEEEEecccH-----hHhh
Confidence 0111111 111233444445554454443333345566799999999888774 478888888742 2232
Q ss_pred eC--CCCCCceEEcCCCCEEEEEecC
Q 024436 152 QL--PGFPDNIKRSPRGGFWVGIHSR 175 (268)
Q Consensus 152 ~l--~g~Pdgia~d~dG~l~va~~~~ 175 (268)
.+ |-.+-.+.++..+.|.|+.-..
T Consensus 204 ~i~~~~r~l~~~~l~~~~L~vG~d~~ 229 (362)
T KOG0294|consen 204 EIENPKRILCATFLDGSELLVGGDNE 229 (362)
T ss_pred hhhccccceeeeecCCceEEEecCCc
Confidence 22 3345566666666677766543
No 291
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=71.57 E-value=73 Score=28.21 Aligned_cols=67 Identities=13% Similarity=0.130 Sum_probs=45.0
Q ss_pred ceEEEccCCCEEEEEecCCcEEEEEEccCC-CCCceeEEEeCCCCCCceEEcCCCC-EEEEEecCCCcce
Q 024436 113 NGVALSEDGNYILLAETTSCRILRYWLKTS-KAGTIEIVAQLPGFPDNIKRSPRGG-FWVGIHSRRKGIS 180 (268)
Q Consensus 113 nGia~spdg~~lyva~~~~~~I~~~~~~~~-~~g~~~~~~~l~g~Pdgia~d~dG~-l~va~~~~~~~~~ 180 (268)
..|+|||..+.+.++.++.+.|..|++... .+ ..+....+++-+=.+++..||. ++.+.-...-+++
T Consensus 31 S~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~-~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~w 99 (347)
T KOG0647|consen 31 SALAFSPQADNLLAAGSWDGTVRIWEVQNSGQL-VPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLW 99 (347)
T ss_pred heeEeccccCceEEecccCCceEEEEEecCCcc-cchhhhccCCCeEEEEEccCCceEEeeccCCceEEE
Confidence 469999976678889999999999998742 11 1122223445456789989995 6777666543433
No 292
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=71.55 E-value=1.1e+02 Score=30.26 Aligned_cols=139 Identities=16% Similarity=0.053 Sum_probs=72.4
Q ss_pred CcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCC----CceEEcCC---C---CEEEEEecCCCcce
Q 024436 111 FPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFP----DNIKRSPR---G---GFWVGIHSRRKGIS 180 (268)
Q Consensus 111 ~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~P----dgia~d~d---G---~l~va~~~~~~~~~ 180 (268)
.-++-+|..||+++. -...++.|..-.- .++.....+-||.| .+|++.|. | -+-|++|+..
T Consensus 134 R~~~CsWtnDGqyla-lG~~nGTIsiRNk----~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qT---- 204 (1081)
T KOG1538|consen 134 RIICCSWTNDGQYLA-LGMFNGTISIRNK----NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQT---- 204 (1081)
T ss_pred eEEEeeecCCCcEEE-EeccCceEEeecC----CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccce----
Confidence 457889999997554 4556777765432 34444444444444 36666653 2 3667777764
Q ss_pred eeeEeeCccceeeee---ccccceeeeeecc------ccCCCcEEEEEECCCCCEEEEEEcCCCCceeceEEEEEeCCEE
Q 024436 181 KLVLSFPWIGNVLIK---LPIDIVKIHSSLV------KLSGNGGMAMRISEQGNVLEILEEIGRKMWRSISEVEEKDGNL 251 (268)
Q Consensus 181 ~~v~~~~~~g~~l~~---i~~~~~~~~~~~~------~~~~~~~~~~~~~~~G~~~~~~~~~~g~~~~~~s~~~~~~g~L 251 (268)
+.-|.-+|+++.+ +.+...++.-|.+ +.+. +.+..+..+|-.+-++.+-| -+-.|+.+..+++-
T Consensus 205 --LSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsd--k~L~~fTR~GvrLGTvg~~D---~WIWtV~~~PNsQ~ 277 (1081)
T KOG1538|consen 205 --LSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSD--KQLSLFTRDGVRLGTVGEQD---SWIWTVQAKPNSQY 277 (1081)
T ss_pred --eEEEEecceeecccccCCCCchhheeccCCcEEEEccCC--CceEEEeecCeEEeeccccc---eeEEEEEEccCCce
Confidence 4447778888762 2222222221211 1122 12344555565555554432 23345555566665
Q ss_pred EEeeCCCCeEEEEe
Q 024436 252 WIGSVNMPYAGLYN 265 (268)
Q Consensus 252 yv~s~~~~~v~~~~ 265 (268)
|+-+-.+..|+.+.
T Consensus 278 v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 278 VVVGCQDGTIACYN 291 (1081)
T ss_pred EEEEEccCeeehhh
Confidence 55444455565544
No 293
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=70.87 E-value=49 Score=34.28 Aligned_cols=147 Identities=15% Similarity=0.146 Sum_probs=81.5
Q ss_pred CEEEEecCCCCCcceEEECCC-CCEEEEEeCCCeEEEEeCCC----CeEEEEEEcCC---------CCCeeEEEeecCCc
Q 024436 24 GVVQYQIEGAIGPESLAFDAL-GEGPYTGVSDGRIIKWHQDQ----RRWLHFARTSP---------NRNHISVILSGDKT 89 (268)
Q Consensus 24 ~~~~i~~~~~~~P~gia~~~d-G~~l~~~~~~g~I~~~~~~g----~~~~~~~~~~~---------~~~~~~~~~~~~~~ 89 (268)
.++.++.+.-..+..+..+.. |++++++..||.|..+|..- ..+..+-.... .+.=+.+++++..+
T Consensus 1199 ~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~ 1278 (1387)
T KOG1517|consen 1199 VVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQD 1278 (1387)
T ss_pred eEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccC
Confidence 455566665455666655543 69999999999998776421 11111110000 00001245677788
Q ss_pred ceEEEEeCCCCeEEEeecC------CCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEe-C---CCCCCc
Q 024436 90 GRLMKYDPATKQVTVLLGN------LSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-L---PGFPDN 159 (268)
Q Consensus 90 g~v~~~d~~~~~~~~~~~~------~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~-l---~g~Pdg 159 (268)
|.|+.+|......+...+. ...-..+.+.++.. ++.+.+. +.|..|+.+|..++..+.... + -|-+--
T Consensus 1279 G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hap-iiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~sc 1356 (1387)
T KOG1517|consen 1279 GDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAP-IIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSC 1356 (1387)
T ss_pred CeEEEEecccCcccccceeeeccccCccceeeeeccCCC-eeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcce
Confidence 9999999874222211111 11123578888875 7666555 899999999865443332111 1 133556
Q ss_pred eEEcCCCCEEEEE
Q 024436 160 IKRSPRGGFWVGI 172 (268)
Q Consensus 160 ia~d~dG~l~va~ 172 (268)
+++.|.--+.++.
T Consensus 1357 L~FHP~~~llAaG 1369 (1387)
T KOG1517|consen 1357 LAFHPHRLLLAAG 1369 (1387)
T ss_pred eeecchhHhhhhc
Confidence 7777764444444
No 294
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=70.83 E-value=53 Score=28.94 Aligned_cols=55 Identities=13% Similarity=0.155 Sum_probs=41.6
Q ss_pred CCcceEEEEeCC-CCeE-EEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccC
Q 024436 87 DKTGRLMKYDPA-TKQV-TVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT 141 (268)
Q Consensus 87 ~~~g~v~~~d~~-~~~~-~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~ 141 (268)
+-+..||-+... .+.+ +++..+-..-..|+|..++..+|.+-...+.+..||+..
T Consensus 172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~ 228 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRS 228 (364)
T ss_pred cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecc
Confidence 345567766653 2333 456667777889999999999999999999999999863
No 295
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=70.33 E-value=1.1e+02 Score=29.99 Aligned_cols=105 Identities=13% Similarity=0.225 Sum_probs=61.7
Q ss_pred eecCCcceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEc
Q 024436 84 LSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRS 163 (268)
Q Consensus 84 ~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d 163 (268)
+++..+-.|..+..+ ..++.+..+...-.|+++-+++.. ++-...+.|..|+++|..+ .+.+.+ ..+---|...
T Consensus 155 vTgsaDKtIklWk~~-~~l~tf~gHtD~VRgL~vl~~~~f--lScsNDg~Ir~w~~~ge~l--~~~~gh-tn~vYsis~~ 228 (745)
T KOG0301|consen 155 VTGSADKTIKLWKGG-TLLKTFSGHTDCVRGLAVLDDSHF--LSCSNDGSIRLWDLDGEVL--LEMHGH-TNFVYSISMA 228 (745)
T ss_pred EeccCcceeeeccCC-chhhhhccchhheeeeEEecCCCe--EeecCCceEEEEeccCcee--eeeecc-ceEEEEEEec
Confidence 344445556666554 345556666677889999999753 4666789999999986422 111111 1123344445
Q ss_pred CCCCEEEEEecCCCcceeeeEeeCccceeeeeccccc
Q 024436 164 PRGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDI 200 (268)
Q Consensus 164 ~dG~l~va~~~~~~~~~~~v~~~~~~g~~l~~i~~~~ 200 (268)
.++.+.|++...++ +..+.. ++....|..|.
T Consensus 229 ~~~~~Ivs~gEDrt-----lriW~~-~e~~q~I~lPt 259 (745)
T KOG0301|consen 229 LSDGLIVSTGEDRT-----LRIWKK-DECVQVITLPT 259 (745)
T ss_pred CCCCeEEEecCCce-----EEEeec-CceEEEEecCc
Confidence 56678888877764 333332 25555565553
No 296
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=69.27 E-value=52 Score=32.64 Aligned_cols=102 Identities=18% Similarity=0.155 Sum_probs=64.3
Q ss_pred CcceEEECCCCCEEEEEeCCCeEEEEeC-CCCeEEEEEEcC------------CCCCeeEEEeecCCcceEEEEeCCCCe
Q 024436 35 GPESLAFDALGEGPYTGVSDGRIIKWHQ-DQRRWLHFARTS------------PNRNHISVILSGDKTGRLMKYDPATKQ 101 (268)
Q Consensus 35 ~P~gia~~~dG~~l~~~~~~g~I~~~~~-~g~~~~~~~~~~------------~~~~~~~~~~~~~~~g~v~~~d~~~~~ 101 (268)
.-+.++++|.-++.++...|..|..++- .|+....|-... |.+.|+....+ ++ .+-.+|--+|+
T Consensus 598 TlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScs-dk--tl~~~Df~sgE 674 (1080)
T KOG1408|consen 598 TLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCS-DK--TLCFVDFVSGE 674 (1080)
T ss_pred eEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeec-CC--ceEEEEeccch
Confidence 4788999999998888888888877764 444333342211 12224433222 22 34444444454
Q ss_pred EE-EeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEcc
Q 024436 102 VT-VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLK 140 (268)
Q Consensus 102 ~~-~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~ 140 (268)
.. +..++-..-.|+-|++|=++| ++-++.++|.+|.+.
T Consensus 675 cvA~m~GHsE~VTG~kF~nDCkHl-ISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 675 CVAQMTGHSEAVTGVKFLNDCKHL-ISVSGDGCIFVWKLP 713 (1080)
T ss_pred hhhhhcCcchheeeeeecccchhh-eeecCCceEEEEECc
Confidence 32 233444556799999999987 466788999999875
No 297
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.69 E-value=21 Score=36.67 Aligned_cols=143 Identities=17% Similarity=0.227 Sum_probs=82.6
Q ss_pred CcceEEECCCCCE----EEEEeCCCeEEEEeCCCC----eEEEEEEc----CCCC-----CeeE-EEeecCCcceEEEEe
Q 024436 35 GPESLAFDALGEG----PYTGVSDGRIIKWHQDQR----RWLHFART----SPNR-----NHIS-VILSGDKTGRLMKYD 96 (268)
Q Consensus 35 ~P~gia~~~dG~~----l~~~~~~g~I~~~~~~g~----~~~~~~~~----~~~~-----~~~~-~~~~~~~~g~v~~~d 96 (268)
.-+-++..+-|.. +..+..||.|..++++.- .....+.. ++-+ .+.. .+-.+..+|.|+.+|
T Consensus 66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWD 145 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWD 145 (1049)
T ss_pred cceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEec
Confidence 4556677766654 666788999999987641 00001100 0000 0111 122556789999999
Q ss_pred CCCCeEEEeecCCCC---cceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCC--CCCceEEcCCC--CEE
Q 024436 97 PATKQVTVLLGNLSF---PNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPG--FPDNIKRSPRG--GFW 169 (268)
Q Consensus 97 ~~~~~~~~~~~~~~~---pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g--~Pdgia~d~dG--~l~ 169 (268)
...-+...-...... ...++|...-.+++.+-+.++++..||+...+ ..-.+.+.++ .-.+++++|++ .++
T Consensus 146 lnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~--pii~ls~~~~~~~~S~l~WhP~~aTql~ 223 (1049)
T KOG0307|consen 146 LNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKK--PIIKLSDTPGRMHCSVLAWHPDHATQLL 223 (1049)
T ss_pred cCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCC--cccccccCCCccceeeeeeCCCCceeee
Confidence 873211111112222 23578887777898888888899999997421 0111222222 34589999988 488
Q ss_pred EEEecCCCcc
Q 024436 170 VGIHSRRKGI 179 (268)
Q Consensus 170 va~~~~~~~~ 179 (268)
+|....+..+
T Consensus 224 ~As~dd~~Pv 233 (1049)
T KOG0307|consen 224 VASGDDSAPV 233 (1049)
T ss_pred eecCCCCCce
Confidence 8887776543
No 298
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=68.48 E-value=54 Score=29.22 Aligned_cols=108 Identities=10% Similarity=0.058 Sum_probs=57.6
Q ss_pred cceEEECCCCCEEEEEeCCCeEEEEeCCCCe-EEEEEEcCCCCCeeEEEeecCCcceEEEEeCCCCeEEEeecCCCCcce
Q 024436 36 PESLAFDALGEGPYTGVSDGRIIKWHQDQRR-WLHFARTSPNRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLSFPNG 114 (268)
Q Consensus 36 P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnG 114 (268)
-.+-|+.+|+..+.+..+++.|......+.. |+. ..++.++-..-+|
T Consensus 13 itchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~--------------------------------~htls~Hd~~vtg 60 (361)
T KOG1523|consen 13 ITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEP--------------------------------AHTLSEHDKIVTG 60 (361)
T ss_pred eeeeeecCCCceEEeccCCceEEEEEecCCCCcee--------------------------------ceehhhhCcceeE
Confidence 4566777777766666666665544433332 211 1223334445567
Q ss_pred EEEccCCCEEEEEecCCcEEEEEEc-cCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEecCC
Q 024436 115 VALSEDGNYILLAETTSCRILRYWL-KTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRR 176 (268)
Q Consensus 115 ia~spdg~~lyva~~~~~~I~~~~~-~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~~~ 176 (268)
|.++|...+| |+-+..+.-++|.. ++++-...-++.++.+...++.+.|..+.++...+++
T Consensus 61 vdWap~snrI-vtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar 122 (361)
T KOG1523|consen 61 VDWAPKSNRI-VTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGAR 122 (361)
T ss_pred EeecCCCCce-eEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCcc
Confidence 8888877656 44444455566665 4432111222334445566777777777666555543
No 299
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=68.35 E-value=1.1e+02 Score=29.20 Aligned_cols=50 Identities=10% Similarity=0.052 Sum_probs=31.2
Q ss_pred EEEEEECCC-CCEEEEEEcCCCCceeceEEEEEeCCEEEEeeCCCCeEEEEeCCC
Q 024436 215 GMAMRISEQ-GNVLEILEEIGRKMWRSISEVEEKDGNLWIGSVNMPYAGLYNYSS 268 (268)
Q Consensus 215 ~~~~~~~~~-G~~~~~~~~~~g~~~~~~s~~~~~~g~Lyv~s~~~~~v~~~~~~~ 268 (268)
+.+.++|+. |+++..+..+. .. ..+.++..++.+|++ ..+..+-.+|.+|
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~-p~--~~~~l~t~g~lvf~g-~~~G~l~a~D~~T 491 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDF-PL--WGGVLATAGDLVFYG-TLEGYFKAFDAKT 491 (527)
T ss_pred eeEEEEeCCCCceeeEecCCC-CC--CCcceEECCcEEEEE-CCCCeEEEEECCC
Confidence 789999985 99988876431 11 122334445555554 4566788888764
No 300
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=68.34 E-value=51 Score=32.20 Aligned_cols=110 Identities=16% Similarity=0.145 Sum_probs=60.0
Q ss_pred CCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcCC--CC----------CeeEEEe-ecCCcceEEEEeC
Q 024436 31 EGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSP--NR----------NHISVIL-SGDKTGRLMKYDP 97 (268)
Q Consensus 31 ~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~--~~----------~~~~~~~-~~~~~g~v~~~d~ 97 (268)
+...+-.++|.+|||+.+.+-..||+|....|....--.....++ .| .++.... .....-.|..||.
T Consensus 718 gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~A 797 (1012)
T KOG1445|consen 718 GHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDA 797 (1012)
T ss_pred cCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhh
Confidence 344578999999999999998999999888765321011111111 01 0111000 0011122334444
Q ss_pred CCCeEE----EeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEcc
Q 024436 98 ATKQVT----VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLK 140 (268)
Q Consensus 98 ~~~~~~----~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~ 140 (268)
++-... ...+....|-=-.+++|...||++.-+..+|+.|.+-
T Consensus 798 q~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~ 844 (1012)
T KOG1445|consen 798 QTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVI 844 (1012)
T ss_pred hhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEec
Confidence 321111 1112112222235678888999999999999999875
No 301
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=67.75 E-value=6.9 Score=33.81 Aligned_cols=60 Identities=20% Similarity=0.213 Sum_probs=40.8
Q ss_pred CcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEe
Q 024436 111 FPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIH 173 (268)
Q Consensus 111 ~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~ 173 (268)
.-+|+.+-||++ ++.+..+.+||.+|...... ...++..-.+..+.+++.++-++..+..
T Consensus 253 Gv~gvrIRpD~K-IlATAGWD~RiRVyswrtl~--pLAVLkyHsagvn~vAfspd~~lmAaas 312 (323)
T KOG0322|consen 253 GVSGVRIRPDGK-ILATAGWDHRIRVYSWRTLN--PLAVLKYHSAGVNAVAFSPDCELMAAAS 312 (323)
T ss_pred CccceEEccCCc-EEeecccCCcEEEEEeccCC--chhhhhhhhcceeEEEeCCCCchhhhcc
Confidence 347999999998 77888899999999986421 1222222124567888988866655443
No 302
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=67.21 E-value=87 Score=27.75 Aligned_cols=31 Identities=26% Similarity=0.361 Sum_probs=24.0
Q ss_pred CCcceEEEccCCCEEEEEecCCcEEEEEEccC
Q 024436 110 SFPNGVALSEDGNYILLAETTSCRILRYWLKT 141 (268)
Q Consensus 110 ~~pnGia~spdg~~lyva~~~~~~I~~~~~~~ 141 (268)
..-||+|++.||+++... ...+|+..|....
T Consensus 247 gkvngla~tSd~~~l~~~-gtd~r~r~wn~~~ 277 (397)
T KOG4283|consen 247 GKVNGLAWTSDARYLASC-GTDDRIRVWNMES 277 (397)
T ss_pred ceeeeeeecccchhhhhc-cCccceEEeeccc
Confidence 345899999999888644 4568888888764
No 303
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=67.21 E-value=60 Score=31.67 Aligned_cols=109 Identities=18% Similarity=0.233 Sum_probs=69.7
Q ss_pred CCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCC-eEEEEEEcCCC------CCeeEEEeecCCcceEEEEeCCC-CeE
Q 024436 31 EGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQR-RWLHFARTSPN------RNHISVILSGDKTGRLMKYDPAT-KQV 102 (268)
Q Consensus 31 ~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~-~~~~~~~~~~~------~~~~~~~~~~~~~g~v~~~d~~~-~~~ 102 (268)
+....-..+.+++||+.+.++..||.|-.|+.... .+..+.....+ .+.+..++.+...+.|++-|..+ .+.
T Consensus 211 GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~ 290 (735)
T KOG0308|consen 211 GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKS 290 (735)
T ss_pred ccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhh
Confidence 44567888999999999999999999999987643 23333221111 01123345677889999988876 334
Q ss_pred EEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEcc
Q 024436 103 TVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLK 140 (268)
Q Consensus 103 ~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~ 140 (268)
+.+.+.-+--..+++..+.+.++++- ....|.+|...
T Consensus 291 tlick~daPv~~l~~~~~~~~~WvtT-tds~I~rW~~~ 327 (735)
T KOG0308|consen 291 TLICKEDAPVLKLHLHEHDNSVWVTT-TDSSIKRWKLE 327 (735)
T ss_pred eEeecCCCchhhhhhccccCCceeee-ccccceecCCc
Confidence 44444433334566665555577664 56788888754
No 304
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=66.77 E-value=1.1e+02 Score=28.31 Aligned_cols=19 Identities=26% Similarity=0.396 Sum_probs=17.2
Q ss_pred CcceEEEccCCCEEEEEec
Q 024436 111 FPNGVALSEDGNYILLAET 129 (268)
Q Consensus 111 ~pnGia~spdg~~lyva~~ 129 (268)
.|.=+.+|-||++||||++
T Consensus 390 GPQMlQLSLDGKRLYVt~S 408 (476)
T KOG0918|consen 390 GPQMLQLSLDGKRLYVTNS 408 (476)
T ss_pred CceeEEeccCCcEEEEEch
Confidence 4778999999999999986
No 305
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=66.66 E-value=70 Score=30.74 Aligned_cols=107 Identities=20% Similarity=0.278 Sum_probs=64.0
Q ss_pred CcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcCCCCC-----ee-----EEEeecCCcceEEEEeCCCCeEEE
Q 024436 35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRN-----HI-----SVILSGDKTGRLMKYDPATKQVTV 104 (268)
Q Consensus 35 ~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~~~~-----~~-----~~~~~~~~~g~v~~~d~~~~~~~~ 104 (268)
=-+.++...||.++.++.+|-++..|++-..........+--.+ |+ ..++++.++..|..+|.+..+-.-
T Consensus 52 CVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~ 131 (758)
T KOG1310|consen 52 CVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGG 131 (758)
T ss_pred eecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccc
Confidence 36788999999999999999999999885432222211110000 00 122344445556666665211111
Q ss_pred e-----------ecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccC
Q 024436 105 L-----------LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT 141 (268)
Q Consensus 105 ~-----------~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~ 141 (268)
. .-.....--||..|++-..|.+.+..+.|..||+.-
T Consensus 132 ~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiRE 179 (758)
T KOG1310|consen 132 MDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIRE 179 (758)
T ss_pred cccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccC
Confidence 1 111223346888998855777778889999999864
No 306
>PHA03098 kelch-like protein; Provisional
Probab=66.43 E-value=1.2e+02 Score=28.75 Aligned_cols=98 Identities=15% Similarity=0.124 Sum_probs=51.6
Q ss_pred ECCCCCEEEEEeC------CCeEEEEeCCCCeEEEEEEcCCCC---------CeeEEEeec---CCcceEEEEeCCCCeE
Q 024436 41 FDALGEGPYTGVS------DGRIIKWHQDQRRWLHFARTSPNR---------NHISVILSG---DKTGRLMKYDPATKQV 102 (268)
Q Consensus 41 ~~~dG~~l~~~~~------~g~I~~~~~~g~~~~~~~~~~~~~---------~~~~~~~~~---~~~g~v~~~d~~~~~~ 102 (268)
+..++.+++.+-. ...++++++....|.........+ ..++.+... .....++++|+.++++
T Consensus 291 ~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 291 VVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred EEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 3345665555421 135778888777776543322122 112222111 1234688999998877
Q ss_pred EEeecCCCCcc---eEEEccCCCEEEEEecC------CcEEEEEEccC
Q 024436 103 TVLLGNLSFPN---GVALSEDGNYILLAETT------SCRILRYWLKT 141 (268)
Q Consensus 103 ~~~~~~~~~pn---Gia~spdg~~lyva~~~------~~~I~~~~~~~ 141 (268)
+.... +..|. ..+. -++ .||+.... .+.+.+|++..
T Consensus 371 ~~~~~-lp~~r~~~~~~~-~~~-~iYv~GG~~~~~~~~~~v~~yd~~t 415 (534)
T PHA03098 371 REEPP-LIFPRYNPCVVN-VNN-LIYVIGGISKNDELLKTVECFSLNT 415 (534)
T ss_pred eeCCC-cCcCCccceEEE-ECC-EEEEECCcCCCCcccceEEEEeCCC
Confidence 76442 22221 2332 344 69987542 25688998864
No 307
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=66.24 E-value=85 Score=26.93 Aligned_cols=107 Identities=18% Similarity=0.239 Sum_probs=61.7
Q ss_pred CCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEE--EcCCCCC-----eeEEEeecCCcceEEEEeCCCCeEEEe
Q 024436 33 AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFA--RTSPNRN-----HISVILSGDKTGRLMKYDPATKQVTVL 105 (268)
Q Consensus 33 ~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~--~~~~~~~-----~~~~~~~~~~~g~v~~~d~~~~~~~~~ 105 (268)
+.+-+.+.|..+..+++++.-|..+..|+=..+..+... ....+.- --.+++.+.-.|++..||...|+. .
T Consensus 101 ~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l--~ 178 (307)
T KOG0316|consen 101 LAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTL--S 178 (307)
T ss_pred cceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCcEEEEEeeccee--e
Confidence 345666777777776666666666666653222111110 0000000 013455667778888888765543 3
Q ss_pred ecCCCCc-ceEEEccCCCEEEEEecCCcEEEEEEccCC
Q 024436 106 LGNLSFP-NGVALSEDGNYILLAETTSCRILRYWLKTS 142 (268)
Q Consensus 106 ~~~~~~p-nGia~spdg~~lyva~~~~~~I~~~~~~~~ 142 (268)
.+.+..| |.+.|++||+-+. +.+.+..|.-.|-+.+
T Consensus 179 sDy~g~pit~vs~s~d~nc~L-a~~l~stlrLlDk~tG 215 (307)
T KOG0316|consen 179 SDYFGHPITSVSFSKDGNCSL-ASSLDSTLRLLDKETG 215 (307)
T ss_pred hhhcCCcceeEEecCCCCEEE-Eeeccceeeecccchh
Confidence 4445555 8999999998665 4456677777776643
No 308
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=65.55 E-value=1.3e+02 Score=29.01 Aligned_cols=56 Identities=9% Similarity=0.021 Sum_probs=39.6
Q ss_pred ecCCcceEEEEeCCCCeEE-EeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccC
Q 024436 85 SGDKTGRLMKYDPATKQVT-VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT 141 (268)
Q Consensus 85 ~~~~~g~v~~~d~~~~~~~-~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~ 141 (268)
.......|||++.+-|+.- .+......-|-+.+++-.. |+.+.+..+.|--||+..
T Consensus 150 ~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hg-Lla~Gt~~g~VEfwDpR~ 206 (703)
T KOG2321|consen 150 LVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHG-LLACGTEDGVVEFWDPRD 206 (703)
T ss_pred EeecCcceEEEEccccccccccccccccceeeeecCccc-eEEecccCceEEEecchh
Confidence 3334457999998866543 2333335568899998764 888888899999999864
No 309
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=64.77 E-value=49 Score=30.47 Aligned_cols=104 Identities=19% Similarity=0.264 Sum_probs=62.6
Q ss_pred CcceEEECCCCCEEEEEeC-CCeEEEEeCCC--CeEEEEEE----------cCCCCCeeEEEeecCCcceEEEEeCCCCe
Q 024436 35 GPESLAFDALGEGPYTGVS-DGRIIKWHQDQ--RRWLHFAR----------TSPNRNHISVILSGDKTGRLMKYDPATKQ 101 (268)
Q Consensus 35 ~P~gia~~~dG~~l~~~~~-~g~I~~~~~~g--~~~~~~~~----------~~~~~~~~~~~~~~~~~g~v~~~d~~~~~ 101 (268)
.-+.+++.+-..-++.... ++++..+|... ........ ..|-..++. .++..+++|..+|..+-+
T Consensus 229 ~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~il--AT~S~D~tV~LwDlRnL~ 306 (422)
T KOG0264|consen 229 VVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFIL--ATGSADKTVALWDLRNLN 306 (422)
T ss_pred ceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceE--EeccCCCcEEEeechhcc
Confidence 4566677776555665554 56666666542 11011100 011112332 244567888888887432
Q ss_pred --EEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEcc
Q 024436 102 --VTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLK 140 (268)
Q Consensus 102 --~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~ 140 (268)
+..+...-..-..+.|||....++.+....+|+.+||+.
T Consensus 307 ~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls 347 (422)
T KOG0264|consen 307 KPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLS 347 (422)
T ss_pred cCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecc
Confidence 222333334456899999999999999999999999987
No 310
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=64.34 E-value=1.1e+02 Score=27.55 Aligned_cols=86 Identities=15% Similarity=0.093 Sum_probs=48.8
Q ss_pred CCcceEEEEeCCCCeEEEee-cCCCCcceEEEccC-CCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcC
Q 024436 87 DKTGRLMKYDPATKQVTVLL-GNLSFPNGVALSED-GNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSP 164 (268)
Q Consensus 87 ~~~g~v~~~d~~~~~~~~~~-~~~~~pnGia~spd-g~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~ 164 (268)
-.+|.|..||+.+++.-... ..-..-||+.|..+ +-+...+-+..+.|..||+....-..+..+..-++.| -+++|.
T Consensus 47 lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~-f~~ld~ 125 (376)
T KOG1188|consen 47 LSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTP-FICLDL 125 (376)
T ss_pred ecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCc-ceEeec
Confidence 46788888998876543333 33345689999874 3334455567789999998632111111122223333 455665
Q ss_pred --CCCEEEEEe
Q 024436 165 --RGGFWVGIH 173 (268)
Q Consensus 165 --dG~l~va~~ 173 (268)
.+++..+..
T Consensus 126 nck~~ii~~Gt 136 (376)
T KOG1188|consen 126 NCKKNIIACGT 136 (376)
T ss_pred cCcCCeEEecc
Confidence 556655543
No 311
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=63.39 E-value=23 Score=32.34 Aligned_cols=57 Identities=19% Similarity=0.309 Sum_probs=38.8
Q ss_pred CcceEEEEeCCCCeEEEeecCCCCc--ceEEEccCCCEEEEEecCCcEEEEEEccCCCCC
Q 024436 88 KTGRLMKYDPATKQVTVLLGNLSFP--NGVALSEDGNYILLAETTSCRILRYWLKTSKAG 145 (268)
Q Consensus 88 ~~g~v~~~d~~~~~~~~~~~~~~~p--nGia~spdg~~lyva~~~~~~I~~~~~~~~~~g 145 (268)
....||.||.++-+.--...++.+. ..|+|++||..|+++.+. +-......++..+|
T Consensus 319 t~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~D-GyCS~vtfe~~elg 377 (434)
T KOG1009|consen 319 TKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTD-GFCSLVTFEPWELG 377 (434)
T ss_pred ecceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccC-CceEEEEEcchhcc
Confidence 4567889988754444445555554 589999999999988654 55566666655554
No 312
>PHA02790 Kelch-like protein; Provisional
Probab=63.07 E-value=1.4e+02 Score=28.19 Aligned_cols=95 Identities=13% Similarity=0.027 Sum_probs=50.7
Q ss_pred CCCCEEEEEeCC-----CeEEEEeCCCCeEEEEEEcCCCC---------CeeEEEeecCCcceEEEEeCCCCeEEEeecC
Q 024436 43 ALGEGPYTGVSD-----GRIIKWHQDQRRWLHFARTSPNR---------NHISVILSGDKTGRLMKYDPATKQVTVLLGN 108 (268)
Q Consensus 43 ~dG~~l~~~~~~-----g~I~~~~~~g~~~~~~~~~~~~~---------~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~ 108 (268)
.++.+++++-.+ ..+.++++..+.|...+.....+ +.++.+........+.++|+.++++..+..
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~- 348 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS- 348 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCC-
Confidence 445555554321 35778888777676654332222 122222211123468899998777766543
Q ss_pred CCCcc---eEEEccCCCEEEEEecCC---cEEEEEEcc
Q 024436 109 LSFPN---GVALSEDGNYILLAETTS---CRILRYWLK 140 (268)
Q Consensus 109 ~~~pn---Gia~spdg~~lyva~~~~---~~I~~~~~~ 140 (268)
+..|. +.+. -+| .|||..... ..+.+|++.
T Consensus 349 l~~~r~~~~~~~-~~g-~IYviGG~~~~~~~ve~ydp~ 384 (480)
T PHA02790 349 LLKPRCNPAVAS-INN-VIYVIGGHSETDTTTEYLLPN 384 (480)
T ss_pred CCCCCcccEEEE-ECC-EEEEecCcCCCCccEEEEeCC
Confidence 33332 2332 355 599985432 356778775
No 313
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=62.82 E-value=45 Score=31.89 Aligned_cols=67 Identities=16% Similarity=0.171 Sum_probs=48.8
Q ss_pred CcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEecCCCcceeeeEeeC
Q 024436 111 FPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSRRKGISKLVLSFP 187 (268)
Q Consensus 111 ~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~~~~~~~~~v~~~~ 187 (268)
.+-..+++|+++.| +....++.|..||...+ .......+-.|.-+++.|+|.+++.....+. ++.|+
T Consensus 261 ~v~~ca~sp~E~kL-vlGC~DgSiiLyD~~~~----~t~~~ka~~~P~~iaWHp~gai~~V~s~qGe-----lQ~FD 327 (545)
T PF11768_consen 261 QVICCARSPSEDKL-VLGCEDGSIILYDTTRG----VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGE-----LQCFD 327 (545)
T ss_pred cceEEecCcccceE-EEEecCCeEEEEEcCCC----eeeeeeecccceEEEEcCCCcEEEEEcCCce-----EEEEE
Confidence 45678999999855 55667899999997632 2333444457999999999998887777653 66664
No 314
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=62.46 E-value=1.2e+02 Score=27.48 Aligned_cols=135 Identities=21% Similarity=0.265 Sum_probs=71.2
Q ss_pred CcceEEECCCCCEEEEEeCCCeEEEEeCCCC-eEEEEEEcCCCCCeeE---------EEeecCCcceEEEEeCCCCeEEE
Q 024436 35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQR-RWLHFARTSPNRNHIS---------VILSGDKTGRLMKYDPATKQVTV 104 (268)
Q Consensus 35 ~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~-~~~~~~~~~~~~~~~~---------~~~~~~~~g~v~~~d~~~~~~~~ 104 (268)
.-..+++-|-|+.+.+...|..|..|+-+.. .+..+. +.+.|+. .+.+...+.+|..+-.++++.+.
T Consensus 195 ~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~---~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~ 271 (406)
T KOG0295|consen 195 GVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFP---GHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKA 271 (406)
T ss_pred ceeeEEEEecCCeeeecccccceeEEecccceeEEecc---CchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhh
Confidence 4567789999997887778888888876543 111111 1111111 11122223333333333332211
Q ss_pred eecCCCCc-ceEEEc--------------cCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeC---CCCCCceEEcCCC
Q 024436 105 LLGNLSFP-NGVALS--------------EDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL---PGFPDNIKRSPRG 166 (268)
Q Consensus 105 ~~~~~~~p-nGia~s--------------pdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l---~g~Pdgia~d~dG 166 (268)
+.....+| ..|+|- .++..+.++-+..+.|..|++..+. .+.+| .....++++.|.|
T Consensus 272 ~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~-----cL~tL~ghdnwVr~~af~p~G 346 (406)
T KOG0295|consen 272 ELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGM-----CLFTLVGHDNWVRGVAFSPGG 346 (406)
T ss_pred hhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCe-----EEEEEecccceeeeeEEcCCC
Confidence 11111111 112221 1233455677777888889987532 22222 2358899999999
Q ss_pred CEEEEEecCCC
Q 024436 167 GFWVGIHSRRK 177 (268)
Q Consensus 167 ~l~va~~~~~~ 177 (268)
++++++....+
T Consensus 347 kyi~ScaDDkt 357 (406)
T KOG0295|consen 347 KYILSCADDKT 357 (406)
T ss_pred eEEEEEecCCc
Confidence 99888887764
No 315
>COG4246 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.26 E-value=52 Score=28.56 Aligned_cols=28 Identities=29% Similarity=0.452 Sum_probs=23.4
Q ss_pred cceEEEccCCCEEEEEecCCcEEEEEEccC
Q 024436 112 PNGVALSEDGNYILLAETTSCRILRYWLKT 141 (268)
Q Consensus 112 pnGia~spdg~~lyva~~~~~~I~~~~~~~ 141 (268)
+.|+|+- ||+ .+|+-..+|||+.|...+
T Consensus 137 aEGLAvr-dG~-~~VsfEr~hRI~iyp~~p 164 (340)
T COG4246 137 AEGLAVR-DGD-ALVSFERDHRIWIYPVPP 164 (340)
T ss_pred cccceEe-cCc-eEEEeeccceeEEeccCC
Confidence 5799998 887 668888889999998874
No 316
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=61.69 E-value=36 Score=21.02 Aligned_cols=31 Identities=10% Similarity=0.177 Sum_probs=25.5
Q ss_pred CcceEEECCCCCEEEEEeCCCeEEEEeCCCC
Q 024436 35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQR 65 (268)
Q Consensus 35 ~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~ 65 (268)
.-..++..|..+++..+..+|+|.....+++
T Consensus 13 ~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~q 43 (47)
T PF12894_consen 13 RVSCMSWCPTMDLIALGTEDGEVLVYRLNWQ 43 (47)
T ss_pred cEEEEEECCCCCEEEEEECCCeEEEEECCCc
Confidence 4567899999999999999999987766654
No 317
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=60.91 E-value=21 Score=34.49 Aligned_cols=42 Identities=24% Similarity=0.192 Sum_probs=35.0
Q ss_pred CCCEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCC
Q 024436 22 TQGVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQD 63 (268)
Q Consensus 22 ~~~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~ 63 (268)
-+.+-+||.|+.+--..++..|||+++.++..||+|...|..
T Consensus 51 ~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve 92 (665)
T KOG4640|consen 51 WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVE 92 (665)
T ss_pred cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEcc
Confidence 467888998875545689999999999999999999887754
No 318
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=60.64 E-value=1.2e+02 Score=26.90 Aligned_cols=80 Identities=21% Similarity=0.269 Sum_probs=45.7
Q ss_pred CCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEe--CCCC-CCceEEcCCC-CEEEEEecCCCcceeeeEe
Q 024436 110 SFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ--LPGF-PDNIKRSPRG-GFWVGIHSRRKGISKLVLS 185 (268)
Q Consensus 110 ~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~--l~g~-Pdgia~d~dG-~l~va~~~~~~~~~~~v~~ 185 (268)
.+..|+.++ |+++||++.. .-+..+++.++. ......+ ++++ ..-+++. | .-|+|++.++..+++. .
T Consensus 129 gyaygv~vs--Gn~aYVadld-dgfLivdvsdps--sP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDV--S 199 (370)
T COG5276 129 GYAYGVYVS--GNYAYVADLD-DGFLIVDVSDPS--SPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDV--S 199 (370)
T ss_pred ceEEEEEec--CCEEEEeecc-CcEEEEECCCCC--CceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEc--c
Confidence 456778776 6799999974 456778887543 1222223 2221 2345554 5 4799999887544332 1
Q ss_pred eCccceeeeeccc
Q 024436 186 FPWIGNVLIKLPI 198 (268)
Q Consensus 186 ~~~~g~~l~~i~~ 198 (268)
.+..-+++.+...
T Consensus 200 np~sPvli~~~n~ 212 (370)
T COG5276 200 NPHSPVLIGSYNT 212 (370)
T ss_pred CCCCCeEEEEEec
Confidence 2333445555544
No 319
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=59.15 E-value=1.9e+02 Score=28.47 Aligned_cols=138 Identities=13% Similarity=0.168 Sum_probs=73.4
Q ss_pred CcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEE-EEEcCCCCC-----ee--EEEeecCCcceEEEEeCCCCeEEEee
Q 024436 35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLH-FARTSPNRN-----HI--SVILSGDKTGRLMKYDPATKQVTVLL 106 (268)
Q Consensus 35 ~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~-~~~~~~~~~-----~~--~~~~~~~~~g~v~~~d~~~~~~~~~~ 106 (268)
.-.++|++.+.+.+.++..+|.|-.|++....... +...++++. |. ..+++...+|.|..||+.+++.....
T Consensus 27 ~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~ 106 (691)
T KOG2048|consen 27 EIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNI 106 (691)
T ss_pred ceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEEe
Confidence 45678999998889999999999999876542221 222223331 11 12334455677777777666554443
Q ss_pred cCCCCc-ceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCC-EEEEEe
Q 024436 107 GNLSFP-NGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG-FWVGIH 173 (268)
Q Consensus 107 ~~~~~p-nGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~-l~va~~ 173 (268)
+....+ =.|+..|.++.+-|. +.++.++-+....+.+...+.+....+.-=-+.++++|. +..++-
T Consensus 107 d~~gg~IWsiai~p~~~~l~Ig-cddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~ 174 (691)
T KOG2048|consen 107 DSNGGAIWSIAINPENTILAIG-CDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI 174 (691)
T ss_pred cCCCcceeEEEeCCccceEEee-cCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEeccc
Confidence 322111 247888888766665 344544444443322222222221123333455666665 433333
No 320
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=58.89 E-value=1.3e+02 Score=26.62 Aligned_cols=82 Identities=15% Similarity=0.211 Sum_probs=38.0
Q ss_pred cceEEEEeCCCCeEEEee-cCCCCcceEEEccCCCEEEEEecCCcEEEE-EEccCCCCCceeEEEe-CCCCCCceEEcCC
Q 024436 89 TGRLMKYDPATKQVTVLL-GNLSFPNGVALSEDGNYILLAETTSCRILR-YWLKTSKAGTIEIVAQ-LPGFPDNIKRSPR 165 (268)
Q Consensus 89 ~g~v~~~d~~~~~~~~~~-~~~~~pnGia~spdg~~lyva~~~~~~I~~-~~~~~~~~g~~~~~~~-l~g~Pdgia~d~d 165 (268)
.|.||+=.-.....+.+. +....-+.+..++||+++.|+ ..+.+++ ++. |. ....++.. -...-..|.++++
T Consensus 123 ~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs--~~G~~~~s~~~-G~--~~w~~~~r~~~~riq~~gf~~~ 197 (302)
T PF14870_consen 123 RGAIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVS--SRGNFYSSWDP-GQ--TTWQPHNRNSSRRIQSMGFSPD 197 (302)
T ss_dssp T--EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEE--TTSSEEEEE-T-T---SS-EEEE--SSS-EEEEEE-TT
T ss_pred CCcEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEE--CcccEEEEecC-CC--ccceEEccCccceehhceecCC
Confidence 355555544433444433 223445678888999755555 4455543 333 21 11233332 2235678899999
Q ss_pred CCEEEEEecC
Q 024436 166 GGFWVGIHSR 175 (268)
Q Consensus 166 G~l~va~~~~ 175 (268)
|+||+...++
T Consensus 198 ~~lw~~~~Gg 207 (302)
T PF14870_consen 198 GNLWMLARGG 207 (302)
T ss_dssp S-EEEEETTT
T ss_pred CCEEEEeCCc
Confidence 9999988554
No 321
>PHA02790 Kelch-like protein; Provisional
Probab=58.39 E-value=1.6e+02 Score=27.64 Aligned_cols=122 Identities=11% Similarity=0.029 Sum_probs=62.8
Q ss_pred CCCCCEEEEEeC--CCeEEEEeCCCCeEEEEEEcCCCCC---------eeEEEeecC-CcceEEEEeCCCCeEEEeecCC
Q 024436 42 DALGEGPYTGVS--DGRIIKWHQDQRRWLHFARTSPNRN---------HISVILSGD-KTGRLMKYDPATKQVTVLLGNL 109 (268)
Q Consensus 42 ~~dG~~l~~~~~--~g~I~~~~~~g~~~~~~~~~~~~~~---------~~~~~~~~~-~~g~v~~~d~~~~~~~~~~~~~ 109 (268)
.-+|.+|+++-. ...+.++++..+.|...+.....+. .++.+.... ....+.++||++.+++.... +
T Consensus 316 ~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~-m 394 (480)
T PHA02790 316 PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPS-T 394 (480)
T ss_pred EECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCC-C
Confidence 346776665432 2457778876666765543322221 122221111 12457789999888876532 3
Q ss_pred CCcc---eEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCC--CCCCceEEcCCCCEEEEEe
Q 024436 110 SFPN---GVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLP--GFPDNIKRSPRGGFWVGIH 173 (268)
Q Consensus 110 ~~pn---Gia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~--g~Pdgia~d~dG~l~va~~ 173 (268)
..|. +++ .-+| .|||.. +.+.+|+++. .....+..++ -.-.|+++- +|+||+...
T Consensus 395 ~~~r~~~~~~-~~~~-~IYv~G---G~~e~ydp~~---~~W~~~~~m~~~r~~~~~~v~-~~~IYviGG 454 (480)
T PHA02790 395 YYPHYKSCAL-VFGR-RLFLVG---RNAEFYCESS---NTWTLIDDPIYPRDNPELIIV-DNKLLLIGG 454 (480)
T ss_pred CCccccceEE-EECC-EEEEEC---CceEEecCCC---CcEeEcCCCCCCccccEEEEE-CCEEEEECC
Confidence 3332 333 3355 699986 3466788753 2233333332 112245543 678888654
No 322
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=57.90 E-value=52 Score=33.19 Aligned_cols=91 Identities=22% Similarity=0.338 Sum_probs=49.2
Q ss_pred EEEEEeCCCeEEEEeCC--CCeEEEEE--EcCCCCCeeE-------EEeecCCcceEEEEeCCCCeEEEeecCCCCc-ce
Q 024436 47 GPYTGVSDGRIIKWHQD--QRRWLHFA--RTSPNRNHIS-------VILSGDKTGRLMKYDPATKQVTVLLGNLSFP-NG 114 (268)
Q Consensus 47 ~l~~~~~~g~I~~~~~~--g~~~~~~~--~~~~~~~~~~-------~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p-nG 114 (268)
--+++..+.+++||||. |+.+.... .-....+|-. -+.-+...|.|-.||.-+.+.+.+..++..| -|
T Consensus 544 ~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~ 623 (794)
T PF08553_consen 544 QTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIG 623 (794)
T ss_pred ceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeE
Confidence 35678889999999974 33221100 0001111110 0112244566666665433444555566666 59
Q ss_pred EEEccCCCEEEEEecCCcEEEEEEc
Q 024436 115 VALSEDGNYILLAETTSCRILRYWL 139 (268)
Q Consensus 115 ia~spdg~~lyva~~~~~~I~~~~~ 139 (268)
|.++.||++|..|- . .-|..++.
T Consensus 624 iDvt~DGkwilaTc-~-tyLlLi~t 646 (794)
T PF08553_consen 624 IDVTADGKWILATC-K-TYLLLIDT 646 (794)
T ss_pred EEecCCCcEEEEee-c-ceEEEEEE
Confidence 99999999886553 2 34555553
No 323
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=57.50 E-value=1.4e+02 Score=26.38 Aligned_cols=31 Identities=23% Similarity=0.288 Sum_probs=25.8
Q ss_pred CCcceEEEccCCCEEEEEecCCcEEEEEEccC
Q 024436 110 SFPNGVALSEDGNYILLAETTSCRILRYWLKT 141 (268)
Q Consensus 110 ~~pnGia~spdg~~lyva~~~~~~I~~~~~~~ 141 (268)
-..|.|...++|+ ++|+-+..+.|++++..+
T Consensus 144 ~HiNsV~~~~~G~-yLiS~R~~~~i~~I~~~t 174 (299)
T PF14269_consen 144 FHINSVDKDDDGD-YLISSRNTSTIYKIDPST 174 (299)
T ss_pred cEeeeeeecCCcc-EEEEecccCEEEEEECCC
Confidence 3468999999997 568999999999999664
No 324
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=57.35 E-value=1.1e+02 Score=27.24 Aligned_cols=40 Identities=15% Similarity=0.101 Sum_probs=27.8
Q ss_pred cceEEEEeCC-CCeEEEeecCCCCcceEEEccCCCEEEEEe
Q 024436 89 TGRLMKYDPA-TKQVTVLLGNLSFPNGVALSEDGNYILLAE 128 (268)
Q Consensus 89 ~g~v~~~d~~-~~~~~~~~~~~~~pnGia~spdg~~lyva~ 128 (268)
.-.||+++.+ +++++.+-.....-..+.|||||+++..+-
T Consensus 306 ~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 306 ERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp SBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred ceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence 4579999998 788877764433224899999998665543
No 325
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=56.95 E-value=1.6e+02 Score=26.97 Aligned_cols=135 Identities=18% Similarity=0.185 Sum_probs=79.2
Q ss_pred CCcceEEECCCCCEEEEEeCCCeEEEEeC--CCC-eEEEEEE--------------------cCCCCC------e--eEE
Q 024436 34 IGPESLAFDALGEGPYTGVSDGRIIKWHQ--DQR-RWLHFAR--------------------TSPNRN------H--ISV 82 (268)
Q Consensus 34 ~~P~gia~~~dG~~l~~~~~~g~I~~~~~--~g~-~~~~~~~--------------------~~~~~~------~--~~~ 82 (268)
..-+++.++++|..+.++.-|..|-.|+. +-. ..+.+.. ..+.+. | ...
T Consensus 194 ~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v 273 (423)
T KOG0313|consen 194 RSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATV 273 (423)
T ss_pred cceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCc
Confidence 45788999999998888888888777761 110 0111100 000010 1 011
Q ss_pred EeecCCcceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeC---CCCCCc
Q 024436 83 ILSGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL---PGFPDN 159 (268)
Q Consensus 83 ~~~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l---~g~Pdg 159 (268)
.+....++.|.++|..++....-...-..-|.|..+|.-+ |..+.+....|..||+..+. +.... .++ .+...+
T Consensus 274 ~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~-Ll~~gssdr~irl~DPR~~~-gs~v~-~s~~gH~nwVss 350 (423)
T KOG0313|consen 274 IYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSK-LLASGSSDRHIRLWDPRTGD-GSVVS-QSLIGHKNWVSS 350 (423)
T ss_pred eEeecccceEEEEEeecccceeeeecCcceeEeecccccc-eeeecCCCCceeecCCCCCC-CceeE-Eeeecchhhhhh
Confidence 2344456677777777666554444556678999999875 77788888889999987431 11111 122 235667
Q ss_pred eEEcCCCC-EEEE
Q 024436 160 IKRSPRGG-FWVG 171 (268)
Q Consensus 160 ia~d~dG~-l~va 171 (268)
+.+.|... .+++
T Consensus 351 vkwsp~~~~~~~S 363 (423)
T KOG0313|consen 351 VKWSPTNEFQLVS 363 (423)
T ss_pred eecCCCCceEEEE
Confidence 77777653 4443
No 326
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=56.74 E-value=39 Score=32.55 Aligned_cols=37 Identities=19% Similarity=0.258 Sum_probs=26.9
Q ss_pred CCceEEcCCCCEEEEEecCCCcceeeeEee-Cccceeeeeccccc
Q 024436 157 PDNIKRSPRGGFWVGIHSRRKGISKLVLSF-PWIGNVLIKLPIDI 200 (268)
Q Consensus 157 Pdgia~d~dG~l~va~~~~~~~~~~~v~~~-~~~g~~l~~i~~~~ 200 (268)
.-.+.+|.+|++|++.+.+ +.+| ...++++...+.+.
T Consensus 167 V~aLv~D~~g~lWvgT~dG-------L~~fd~~~gkalql~s~~~ 204 (671)
T COG3292 167 VVALVFDANGRLWVGTPDG-------LSYFDAGRGKALQLASPPL 204 (671)
T ss_pred ceeeeeeccCcEEEecCCc-------ceEEccccceEEEcCCCcc
Confidence 3478999999999999876 4445 45677777665554
No 327
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=56.42 E-value=1.7e+02 Score=27.06 Aligned_cols=85 Identities=13% Similarity=0.164 Sum_probs=56.1
Q ss_pred ecCCcceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeC----CCCCCce
Q 024436 85 SGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL----PGFPDNI 160 (268)
Q Consensus 85 ~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l----~g~Pdgi 160 (268)
+......|..++-+||+...-.++-..-..+.|+.||. ++++-+...+|.+|++..++ ++.+. ...|.-.
T Consensus 149 sag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~~~-----~v~e~~~heG~k~~Ra 222 (472)
T KOG0303|consen 149 SAGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRRGT-----VVSEGVAHEGAKPARA 222 (472)
T ss_pred hccCCceEEEEeccCCceeeecCCCCeEEEEEeccCCc-eeeeecccceeEEEcCCCCc-----EeeecccccCCCccee
Confidence 34456678888888887655555444556899999996 77888888999999986422 22221 1235555
Q ss_pred EEcCCCCEEEEEecC
Q 024436 161 KRSPRGGFWVGIHSR 175 (268)
Q Consensus 161 a~d~dG~l~va~~~~ 175 (268)
.+-.+|.++.+.+..
T Consensus 223 ifl~~g~i~tTGfsr 237 (472)
T KOG0303|consen 223 IFLASGKIFTTGFSR 237 (472)
T ss_pred EEeccCceeeecccc
Confidence 555677766665544
No 328
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=55.34 E-value=2.4e+02 Score=28.62 Aligned_cols=97 Identities=15% Similarity=0.113 Sum_probs=55.1
Q ss_pred CCcceEEEEeCCCCeEEEeecCCCCcceEEEccCCC-------EEEEEecCCcEEEEEEccCCCCCceeEEEeC----CC
Q 024436 87 DKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGN-------YILLAETTSCRILRYWLKTSKAGTIEIVAQL----PG 155 (268)
Q Consensus 87 ~~~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~-------~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l----~g 155 (268)
.....||++|..+|++..-+.--....=..+.|+.+ ..|+. ...+++.++|+.-. +...+..+. .+
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflG-ls~n~lfriDpR~~--~~k~v~~~~k~Y~~~ 577 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLG-LSDNSLFRIDPRLS--GNKLVDSQSKQYSSK 577 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEE-ECCCceEEeccCCC--CCceeeccccccccC
Confidence 345789999999999876653322110123333211 23443 34578999987521 111111111 11
Q ss_pred -CCCceEEcCCCCEEEEEecCCCcceeeeEeeCcccee
Q 024436 156 -FPDNIKRSPRGGFWVGIHSRRKGISKLVLSFPWIGNV 192 (268)
Q Consensus 156 -~Pdgia~d~dG~l~va~~~~~~~~~~~v~~~~~~g~~ 192 (268)
.=..+|.+.+|++-|+...+. |.-|...|+.
T Consensus 578 ~~Fs~~aTt~~G~iavgs~~G~------IRLyd~~g~~ 609 (794)
T PF08553_consen 578 NNFSCFATTEDGYIAVGSNKGD------IRLYDRLGKR 609 (794)
T ss_pred CCceEEEecCCceEEEEeCCCc------EEeecccchh
Confidence 124678899999999988876 5567666643
No 329
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=55.07 E-value=1.5e+02 Score=26.26 Aligned_cols=117 Identities=15% Similarity=0.071 Sum_probs=70.0
Q ss_pred CEEEEecCCCCCcceEEECC-CCCEEEEEeCCCeEEEEeC--CCCeEEEEEEcCCCCC-----e---eEEEeecCCcceE
Q 024436 24 GVVQYQIEGAIGPESLAFDA-LGEGPYTGVSDGRIIKWHQ--DQRRWLHFARTSPNRN-----H---ISVILSGDKTGRL 92 (268)
Q Consensus 24 ~~~~i~~~~~~~P~gia~~~-dG~~l~~~~~~g~I~~~~~--~g~~~~~~~~~~~~~~-----~---~~~~~~~~~~g~v 92 (268)
....++-|.-..-..|+|+| +..++.++.-|++|..|+. +|.. ..-+..+-.++ | ....+.+..++.+
T Consensus 18 kd~ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~-~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~ 96 (347)
T KOG0647|consen 18 KDYEVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQL-VPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQA 96 (347)
T ss_pred cceecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcc-cchhhhccCCCeEEEEEccCCceEEeeccCCce
Confidence 34444444445567899999 4554556777888877653 3331 11111000111 0 1223455677788
Q ss_pred EEEeCCCCeEEEeecCCCCcceEEEccCCC-EEEEEecCCcEEEEEEccC
Q 024436 93 MKYDPATKQVTVLLGNLSFPNGVALSEDGN-YILLAETTSCRILRYWLKT 141 (268)
Q Consensus 93 ~~~d~~~~~~~~~~~~~~~pnGia~spdg~-~lyva~~~~~~I~~~~~~~ 141 (268)
-.+|..++++..+..+-.-..-+.|-+... .+.++.++...|.-||...
T Consensus 97 k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~ 146 (347)
T KOG0647|consen 97 KLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRS 146 (347)
T ss_pred EEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCC
Confidence 888888888887765554445566655432 3678999999999998763
No 330
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=53.25 E-value=58 Score=31.97 Aligned_cols=28 Identities=25% Similarity=0.430 Sum_probs=21.0
Q ss_pred cceEEEccCCCEEEEEecCCcEEEEEEcc
Q 024436 112 PNGVALSEDGNYILLAETTSCRILRYWLK 140 (268)
Q Consensus 112 pnGia~spdg~~lyva~~~~~~I~~~~~~ 140 (268)
-.-|+|||||++|. +-+..+.+..|...
T Consensus 575 VT~l~FSpdg~~LL-svsRDRt~sl~~~~ 602 (764)
T KOG1063|consen 575 VTRLAFSPDGRYLL-SVSRDRTVSLYEVQ 602 (764)
T ss_pred EEEEEECCCCcEEE-EeecCceEEeeeee
Confidence 35699999999775 55566777888764
No 331
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.04 E-value=2.3e+02 Score=27.78 Aligned_cols=137 Identities=19% Similarity=0.167 Sum_probs=77.0
Q ss_pred CCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEc------------CCCCCeeEEEeecCCcceEEEEeCCCCe
Q 024436 34 IGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFART------------SPNRNHISVILSGDKTGRLMKYDPATKQ 101 (268)
Q Consensus 34 ~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~------------~~~~~~~~~~~~~~~~g~v~~~d~~~~~ 101 (268)
..-++|++.|.--.+.++.+|-.|-.|+=+++ |.....- .|..+.......-+.+-.||.+-.. -.
T Consensus 98 DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~-wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~-~~ 175 (794)
T KOG0276|consen 98 DYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE-WACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSP-HP 175 (794)
T ss_pred cceeeeeecCCCCeEEecCCccEEEEeeccCc-eeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCC-CC
Confidence 46789999999987888888888877776554 3221111 1221111111122344445554332 12
Q ss_pred EEEeecCCCCcceEEEccCCCEEE-EEecCCcEEEEEEccCCC----C-C---ceeEEEeCCCCCCceEEcCCCC--EEE
Q 024436 102 VTVLLGNLSFPNGVALSEDGNYIL-LAETTSCRILRYWLKTSK----A-G---TIEIVAQLPGFPDNIKRSPRGG--FWV 170 (268)
Q Consensus 102 ~~~~~~~~~~pnGia~spdg~~ly-va~~~~~~I~~~~~~~~~----~-g---~~~~~~~l~g~Pdgia~d~dG~--l~v 170 (268)
.-.+..+-..-|.+.+-+.|+.=| ++....+.|.+||.++.. + | +.....-.|..|-=|.-..||. +|-
T Consensus 176 nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWh 255 (794)
T KOG0276|consen 176 NFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWN 255 (794)
T ss_pred ceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEec
Confidence 233445566678999988775443 567777889999987532 1 1 1111111345676777777884 565
Q ss_pred EE
Q 024436 171 GI 172 (268)
Q Consensus 171 a~ 172 (268)
+.
T Consensus 256 s~ 257 (794)
T KOG0276|consen 256 SK 257 (794)
T ss_pred Cc
Confidence 43
No 332
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=52.19 E-value=91 Score=27.98 Aligned_cols=87 Identities=14% Similarity=0.163 Sum_probs=59.4
Q ss_pred CcceEEEEeCCCCeEE-EeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCC---ceEEc
Q 024436 88 KTGRLMKYDPATKQVT-VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPD---NIKRS 163 (268)
Q Consensus 88 ~~g~v~~~d~~~~~~~-~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pd---gia~d 163 (268)
-.|-|+.+|+.+++.. .+......-|.|-+.|+.-.|.++.+..+.|..|++..... ..+|..+.|.-| .+.++
T Consensus 113 ~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~C--v~VfGG~egHrdeVLSvD~~ 190 (385)
T KOG1034|consen 113 YLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVC--VAVFGGVEGHRDEVLSVDFS 190 (385)
T ss_pred ceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeE--EEEecccccccCcEEEEEEc
Confidence 4577888888766543 34566677899999999878999999999999999975321 334444433322 35566
Q ss_pred CCCCEEEEEecCC
Q 024436 164 PRGGFWVGIHSRR 176 (268)
Q Consensus 164 ~dG~l~va~~~~~ 176 (268)
.+|..++++...+
T Consensus 191 ~~gd~i~ScGmDh 203 (385)
T KOG1034|consen 191 LDGDRIASCGMDH 203 (385)
T ss_pred CCCCeeeccCCcc
Confidence 7777555554444
No 333
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=51.46 E-value=58 Score=32.17 Aligned_cols=111 Identities=15% Similarity=0.164 Sum_probs=60.0
Q ss_pred hhhcCC--CEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeC-CCCeEEEEEEcCCC------C--CeeEEEeec
Q 024436 18 INSSTQ--GVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQ-DQRRWLHFARTSPN------R--NHISVILSG 86 (268)
Q Consensus 18 ~~~~~~--~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~-~g~~~~~~~~~~~~------~--~~~~~~~~~ 86 (268)
+|-.++ +++++.= +...-..+++.|+|++...+..|..+..|+. .|+....|...... . +++.. .+
T Consensus 138 iwD~Rk~Gc~~~~~s-~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla--~G 214 (825)
T KOG0267|consen 138 IWDIRKKGCSHTYKS-HTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLA--PG 214 (825)
T ss_pred ehhhhccCceeeecC-CcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhc--cC
Confidence 455553 4444443 3456777899999996666656677766765 45544444311110 0 11111 22
Q ss_pred CCcceEEEEeCCCCeEEEeecC---CCCcceEEEccCCCEEEEEecCCcE
Q 024436 87 DKTGRLMKYDPATKQVTVLLGN---LSFPNGVALSEDGNYILLAETTSCR 133 (268)
Q Consensus 87 ~~~g~v~~~d~~~~~~~~~~~~---~~~pnGia~spdg~~lyva~~~~~~ 133 (268)
.....+-.+|.+ +.+.+... ..-+.+.+|+||++.++.-+..+.+
T Consensus 215 s~d~tv~f~dle--tfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~sl~ 262 (825)
T KOG0267|consen 215 SSDRTVRFWDLE--TFEVISSGKPETDGVRSLAFNPDGKIVLSGEQISLS 262 (825)
T ss_pred CCCceeeeeccc--eeEEeeccCCccCCceeeeecCCceeeecCchhhhh
Confidence 334455566654 23333222 3345688999999877665554443
No 334
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=49.61 E-value=2.3e+02 Score=26.71 Aligned_cols=100 Identities=12% Similarity=0.105 Sum_probs=51.1
Q ss_pred EEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEc------------CCCCCeeEEEe----------ecCCcceEEEEe
Q 024436 39 LAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFART------------SPNRNHISVIL----------SGDKTGRLMKYD 96 (268)
Q Consensus 39 ia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~------------~~~~~~~~~~~----------~~~~~g~v~~~d 96 (268)
+-..++|++++... .++..++..|+.+...... -++++++.... ...-...|..+|
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd 230 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLLGKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD 230 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT--EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-
T ss_pred eeEcCCCCEEEecC--CceEEEcCCCCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC
Confidence 56778888555433 7777788877743332211 12333332221 111234688888
Q ss_pred CCCCeEEEee---cCC-------------------------CCcceEEEccCCCEEEEEecCCcEEEEEEccC
Q 024436 97 PATKQVTVLL---GNL-------------------------SFPNGVALSEDGNYILLAETTSCRILRYWLKT 141 (268)
Q Consensus 97 ~~~~~~~~~~---~~~-------------------------~~pnGia~spdg~~lyva~~~~~~I~~~~~~~ 141 (268)
.+|++...+ +.+ ...|.|.+++..+.|+++.+..+.|++++..+
T Consensus 231 -~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t 302 (477)
T PF05935_consen 231 -PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRT 302 (477)
T ss_dssp -TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TT
T ss_pred -CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCC
Confidence 457765532 111 23489999996668999999999999999654
No 335
>PRK10115 protease 2; Provisional
Probab=49.47 E-value=2.8e+02 Score=27.60 Aligned_cols=52 Identities=13% Similarity=0.072 Sum_probs=33.6
Q ss_pred cceEEEEeCCCCeE-EEeecCCCCcceEEEccCCCEEEEEec-----CCcEEEEEEccCC
Q 024436 89 TGRLMKYDPATKQV-TVLLGNLSFPNGVALSEDGNYILLAET-----TSCRILRYWLKTS 142 (268)
Q Consensus 89 ~g~v~~~d~~~~~~-~~~~~~~~~pnGia~spdg~~lyva~~-----~~~~I~~~~~~~~ 142 (268)
.-.|+.+|..+|+. .....+.. .+++|++|++.||++-. ....|+++++.++
T Consensus 152 ~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~ 209 (686)
T PRK10115 152 QYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTP 209 (686)
T ss_pred EEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCC
Confidence 34678888877752 11122222 46999999998888743 2258888888754
No 336
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=48.90 E-value=3.2e+02 Score=28.14 Aligned_cols=62 Identities=13% Similarity=0.207 Sum_probs=35.0
Q ss_pred cceEEEEeCCC---CeEEEeecCCCCcceEEEccCCC--EEEEEecCCcE---------EEEEEccCCCCCceeEEE
Q 024436 89 TGRLMKYDPAT---KQVTVLLGNLSFPNGVALSEDGN--YILLAETTSCR---------ILRYWLKTSKAGTIEIVA 151 (268)
Q Consensus 89 ~g~v~~~d~~~---~~~~~~~~~~~~pnGia~spdg~--~lyva~~~~~~---------I~~~~~~~~~~g~~~~~~ 151 (268)
.-.||+-+..+ +.++.-.+....|. -.+.+.|+ .+||++..+++ -|......++.|+.+.+-
T Consensus 376 ~s~vYv~~L~t~~~~~vkl~ve~aaipr-wrv~e~gdt~ivyv~~a~nn~d~~~~~~~stw~v~f~~gkfg~p~kl~ 451 (912)
T TIGR02171 376 KSSVYVRNLNASGSGLVKLPVENAAIPR-WRVLENGDTVIVYVSDASNNKDDATFAAYSTWQVPFANGKFGTPKKLF 451 (912)
T ss_pred CceEEEEehhccCCCceEeecccccccc-eEecCCCCeEEEEEcCCCCCcchhhhhhcceEEEEecCCCCCCchhhh
Confidence 34577766653 33444455656664 23344444 56888877664 455555556666665543
No 337
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.33 E-value=2.9e+02 Score=27.19 Aligned_cols=104 Identities=14% Similarity=0.255 Sum_probs=67.0
Q ss_pred CcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEE-EEEEc-CCCC--------CeeEEEeecCCcceEEEEeCCCC-eEE
Q 024436 35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWL-HFART-SPNR--------NHISVILSGDKTGRLMKYDPATK-QVT 103 (268)
Q Consensus 35 ~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~-~~~~~-~~~~--------~~~~~~~~~~~~g~v~~~d~~~~-~~~ 103 (268)
.--++.+.|.--.+.++.-+|+|..|+-+..... .|... .|-| +|+ +.+..+..|-.++..|+ +++
T Consensus 15 RVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWi---v~GsDD~~IrVfnynt~ekV~ 91 (794)
T KOG0276|consen 15 RVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWI---VTGSDDMQIRVFNYNTGEKVK 91 (794)
T ss_pred ceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceE---EEecCCceEEEEecccceeeE
Confidence 4456777777776777788899988887655322 22211 1222 233 23444555555555544 566
Q ss_pred EeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCC
Q 024436 104 VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTS 142 (268)
Q Consensus 104 ~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~ 142 (268)
.+..+-.+-..|+..|..- .+.+.+..-.|..|++++.
T Consensus 92 ~FeAH~DyIR~iavHPt~P-~vLtsSDDm~iKlW~we~~ 129 (794)
T KOG0276|consen 92 TFEAHSDYIRSIAVHPTLP-YVLTSSDDMTIKLWDWENE 129 (794)
T ss_pred EeeccccceeeeeecCCCC-eEEecCCccEEEEeeccCc
Confidence 6667777889999999875 4457778888999999853
No 338
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.20 E-value=3.3e+02 Score=27.79 Aligned_cols=29 Identities=31% Similarity=0.504 Sum_probs=21.8
Q ss_pred cceEEEccCCCE-EEEEecCCcEEEEEEccCC
Q 024436 112 PNGVALSEDGNY-ILLAETTSCRILRYWLKTS 142 (268)
Q Consensus 112 pnGia~spdg~~-lyva~~~~~~I~~~~~~~~ 142 (268)
-.|+++..|++. +||+-+ .+|..|.+.|.
T Consensus 174 ITgL~~~~d~~s~lFv~Tt--~~V~~y~l~gr 203 (933)
T KOG2114|consen 174 ITGLALRSDGKSVLFVATT--EQVMLYSLSGR 203 (933)
T ss_pred ceeeEEecCCceeEEEEec--ceeEEEEecCC
Confidence 469999999987 566643 67888888753
No 339
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=46.77 E-value=2.2e+02 Score=25.67 Aligned_cols=39 Identities=28% Similarity=0.349 Sum_probs=23.8
Q ss_pred ceEEEEeCCCCeEEEeecCCCCcc-e-EEEc-cCCCEEEEEec
Q 024436 90 GRLMKYDPATKQVTVLLGNLSFPN-G-VALS-EDGNYILLAET 129 (268)
Q Consensus 90 g~v~~~d~~~~~~~~~~~~~~~pn-G-ia~s-pdg~~lyva~~ 129 (268)
..+++||+.+.+++.+......+. + -+.. -++ .||+...
T Consensus 106 ~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~-~IYv~GG 147 (376)
T PRK14131 106 DDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNG-KAYITGG 147 (376)
T ss_pred ccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCC-EEEEECC
Confidence 468999999888887764222221 2 2232 355 6999744
No 340
>KOG3567 consensus Peptidylglycine alpha-amidating monooxygenase [Posttranslational modification, protein turnover, chaperones]
Probab=46.08 E-value=25 Score=32.82 Aligned_cols=52 Identities=15% Similarity=0.386 Sum_probs=38.6
Q ss_pred cceEEEEeCCCCeEEEe--ecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccC
Q 024436 89 TGRLMKYDPATKQVTVL--LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT 141 (268)
Q Consensus 89 ~g~v~~~d~~~~~~~~~--~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~ 141 (268)
.-++.++++.+...... .+++..|.||-.+.|| ..|+++-..+.+.++++.+
T Consensus 444 ~~~ilvi~~~n~~~l~~~g~~~fylphgl~~dkdg-f~~~tdvash~v~k~k~~~ 497 (501)
T KOG3567|consen 444 EDTILVIDPNNAAVLQSSGKNLFYLPHGLSIDKDG-FYWVTDVASHQVFKLKPNN 497 (501)
T ss_pred cceEEEEcCcchhhhhhccCCceecCCcceecCCC-cEEeecccchhhhhccccc
Confidence 35778888763322221 2456779999999999 6999999999999888764
No 341
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=45.87 E-value=42 Score=17.05 Aligned_cols=27 Identities=30% Similarity=0.348 Sum_probs=19.9
Q ss_pred CCcceEEECCCCCEEEEEeCCCeEEEE
Q 024436 34 IGPESLAFDALGEGPYTGVSDGRIIKW 60 (268)
Q Consensus 34 ~~P~gia~~~dG~~l~~~~~~g~I~~~ 60 (268)
....++.+.+++++++++..++.+..+
T Consensus 13 ~~i~~~~~~~~~~~~~~~~~d~~~~~~ 39 (40)
T smart00320 13 GPVTSVAFSPDGKYLASASDDGTIKLW 39 (40)
T ss_pred CceeEEEECCCCCEEEEecCCCeEEEc
Confidence 356788888888877777777776543
No 342
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.13 E-value=2.6e+02 Score=26.97 Aligned_cols=101 Identities=15% Similarity=0.107 Sum_probs=54.0
Q ss_pred ecCCcceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEE------EecCCcEEEEEEccCCCCCc--eeEEEeCC-C
Q 024436 85 SGDKTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILL------AETTSCRILRYWLKTSKAGT--IEIVAQLP-G 155 (268)
Q Consensus 85 ~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyv------a~~~~~~I~~~~~~~~~~g~--~~~~~~l~-g 155 (268)
.+.....|+.+|-..|++..-+.--.--|=+.+.||.+.-=. ..-.+++|.+||+.-..... .....+.. +
T Consensus 351 ~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k 430 (644)
T KOG2395|consen 351 DGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTK 430 (644)
T ss_pred CCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccc
Confidence 445557899999999988665432222233444444331111 11245789999876211100 11111111 1
Q ss_pred -CCCceEEcCCCCEEEEEecCCCcceeeeEeeCccce
Q 024436 156 -FPDNIKRSPRGGFWVGIHSRRKGISKLVLSFPWIGN 191 (268)
Q Consensus 156 -~Pdgia~d~dG~l~va~~~~~~~~~~~v~~~~~~g~ 191 (268)
.-..++...+|.+.|+...+. |.-|...++
T Consensus 431 ~nFsc~aTT~sG~IvvgS~~Gd------IRLYdri~~ 461 (644)
T KOG2395|consen 431 NNFSCFATTESGYIVVGSLKGD------IRLYDRIGR 461 (644)
T ss_pred cccceeeecCCceEEEeecCCc------EEeehhhhh
Confidence 234577788999988888776 444554444
No 343
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=44.49 E-value=2.3e+02 Score=25.32 Aligned_cols=136 Identities=16% Similarity=0.165 Sum_probs=70.1
Q ss_pred CcceEEECCCCCEEEEEeCCCeEEEEeCC-CCeEEEE-----------EEcCCCCCeeEEEeecCCcceEEEEeCCCCeE
Q 024436 35 GPESLAFDALGEGPYTGVSDGRIIKWHQD-QRRWLHF-----------ARTSPNRNHISVILSGDKTGRLMKYDPATKQV 102 (268)
Q Consensus 35 ~P~gia~~~dG~~l~~~~~~g~I~~~~~~-g~~~~~~-----------~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~ 102 (268)
.-..+-.++.|++|+++..||.|..|+.- ++.+..+ +....++.|+. +...+..+..|...+++.
T Consensus 263 ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiL---sSG~DS~vkLWEi~t~R~ 339 (430)
T KOG0640|consen 263 AITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYIL---SSGKDSTVKLWEISTGRM 339 (430)
T ss_pred ceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEe---ecCCcceeeeeeecCCce
Confidence 34567889999999999999999888742 2222222 12223334443 222233333344444443
Q ss_pred EEeecCC------CCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeC--CCCCCceEEcCCCCEEEEEec
Q 024436 103 TVLLGNL------SFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL--PGFPDNIKRSPRGGFWVGIHS 174 (268)
Q Consensus 103 ~~~~~~~------~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l--~g~Pdgia~d~dG~l~va~~~ 174 (268)
.....+. .+-.--.|...++++.+-|..++.+..|+.... .+.....+ .|-|+-|.-.|.+-.++.+..
T Consensus 340 l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRta---dr~~l~slgHn~a~R~i~HSP~~p~FmTcsd 416 (430)
T KOG0640|consen 340 LKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTA---DRVALLSLGHNGAVRWIVHSPVEPAFMTCSD 416 (430)
T ss_pred EEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccch---hhhhhcccCCCCCceEEEeCCCCCceeeecc
Confidence 2221111 112223455555566666666777777776431 11111111 244556666666666666655
Q ss_pred CC
Q 024436 175 RR 176 (268)
Q Consensus 175 ~~ 176 (268)
..
T Consensus 417 D~ 418 (430)
T KOG0640|consen 417 DF 418 (430)
T ss_pred cc
Confidence 43
No 344
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.30 E-value=1.5e+02 Score=25.67 Aligned_cols=105 Identities=13% Similarity=0.153 Sum_probs=56.9
Q ss_pred cceEEECCCCCEEEEEeCCCeEEEEe--CCCCeEEEEEEcCCC-C----------CeeEEEeecCCcceEEEEeCCCCeE
Q 024436 36 PESLAFDALGEGPYTGVSDGRIIKWH--QDQRRWLHFARTSPN-R----------NHISVILSGDKTGRLMKYDPATKQV 102 (268)
Q Consensus 36 P~gia~~~dG~~l~~~~~~g~I~~~~--~~g~~~~~~~~~~~~-~----------~~~~~~~~~~~~g~v~~~d~~~~~~ 102 (268)
-+.+..+=-|+.+.+...|+.|..+. .++.. ...+.+.+. + .|...+.+..-.|.|..+.-++|+.
T Consensus 14 IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s-~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w 92 (299)
T KOG1332|consen 14 IHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQS-KLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRW 92 (299)
T ss_pred hhHhhhhhhcceeeeecCCccEEEEEEcCCCCc-eeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCch
Confidence 34445555677788877777766554 33321 112222111 1 1222222333456666666665655
Q ss_pred EEe---ecCCCCcceEEEccCCC-EEEEEecCCcEEEEEEccC
Q 024436 103 TVL---LGNLSFPNGVALSEDGN-YILLAETTSCRILRYWLKT 141 (268)
Q Consensus 103 ~~~---~~~~~~pnGia~spdg~-~lyva~~~~~~I~~~~~~~ 141 (268)
+.. ...-..-|.|++.|.+- .++.+.+..+.|.+++.+.
T Consensus 93 ~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~ 135 (299)
T KOG1332|consen 93 TKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDS 135 (299)
T ss_pred hhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcC
Confidence 443 23345678999998753 4455666778887777763
No 345
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=43.97 E-value=3.2e+02 Score=26.66 Aligned_cols=82 Identities=17% Similarity=0.235 Sum_probs=44.3
Q ss_pred CcceEEEEeCCCCeEEEeecCCC--CcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCC----CCCceE
Q 024436 88 KTGRLMKYDPATKQVTVLLGNLS--FPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPG----FPDNIK 161 (268)
Q Consensus 88 ~~g~v~~~d~~~~~~~~~~~~~~--~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g----~Pdgia 161 (268)
..|.+...++.+|.+-...-+.. .-.-..++.+|+ +++... ++-+.+++... ...++.+..| -..-|.
T Consensus 352 s~g~L~van~stG~~v~sv~q~Rg~nit~~~~d~~g~-lWlgs~-q~GLsrl~n~n----~~avlde~agl~ss~V~aiv 425 (671)
T COG3292 352 SIGELMVANGSTGELVRSVHQLRGMNITTTLEDSRGR-LWLGSM-QNGLSRLDNKN----EWAVLDEDAGLPSSEVSAIV 425 (671)
T ss_pred ccceEEEecCCCCcEEEEeeeccccccchhhhccCCc-EEEEec-ccchhhhccCC----cccccccccCCcccceeeee
Confidence 34556666666665433221111 112244555664 887754 34577776542 1222222222 234577
Q ss_pred EcCCCCEEEEEecC
Q 024436 162 RSPRGGFWVGIHSR 175 (268)
Q Consensus 162 ~d~dG~l~va~~~~ 175 (268)
-|++++||++...+
T Consensus 426 ed~dnsLWIGTs~G 439 (671)
T COG3292 426 EDPDNSLWIGTSGG 439 (671)
T ss_pred ecCCCCEEEeccCC
Confidence 79999999988765
No 346
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=43.32 E-value=1.6e+02 Score=28.76 Aligned_cols=65 Identities=20% Similarity=0.217 Sum_probs=47.8
Q ss_pred ecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeC--CCCCCceEEcCCCCEEEE
Q 024436 106 LGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL--PGFPDNIKRSPRGGFWVG 171 (268)
Q Consensus 106 ~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l--~g~Pdgia~d~dG~l~va 171 (268)
..++-.|-=|||+|..+.+-|+....+.|.+|.+....+.+...+ +| .-.|-||++-.|..|.+-
T Consensus 335 IPGILvPDliAfn~kaq~VAVASNTcn~ilVYSv~~s~mPniQqI-qLe~~ERPKGiCFltdklLLil 401 (671)
T PF15390_consen 335 IPGILVPDLIAFNPKAQVVAVASNTCNIILVYSVTPSSMPNIQQI-QLESNERPKGICFLTDKLLLIL 401 (671)
T ss_pred cccccccceeeeCCcCCEEEEEecCCcEEEEEEeccccCCCeeEE-EcccCCCCceeeEccCCeEEEE
Confidence 467778888999999999999988889999999864333333332 23 237999999888765443
No 347
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.19 E-value=2.7e+02 Score=25.60 Aligned_cols=62 Identities=18% Similarity=0.213 Sum_probs=41.6
Q ss_pred CcceEEEccC-CCEEEEEecCCcEEEEEEccCCCCCceeEEEeC---CCCCCceEEcCCCC-EEEEEecCC
Q 024436 111 FPNGVALSED-GNYILLAETTSCRILRYWLKTSKAGTIEIVAQL---PGFPDNIKRSPRGG-FWVGIHSRR 176 (268)
Q Consensus 111 ~pnGia~spd-g~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l---~g~Pdgia~d~dG~-l~va~~~~~ 176 (268)
++.+|.|-++ -.+-+++-+..+.+..||+.. .++++... ..--.-+..+|+|+ +|++...+.
T Consensus 204 W~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~----qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~ 270 (412)
T KOG3881|consen 204 WITDIRFLEGSPNYKFATITRYHQVRLYDTRH----QRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQ 270 (412)
T ss_pred eeccceecCCCCCceEEEEecceeEEEecCcc----cCcceeEeccccCcceeeeecCCCcEEEEecccch
Confidence 4568899875 135778888889999999863 24555542 22234678889998 566665553
No 348
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=43.17 E-value=2.6e+02 Score=25.45 Aligned_cols=160 Identities=15% Similarity=0.189 Sum_probs=81.5
Q ss_pred EEEEecCC--CCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEE-EEEEcCCCC---Cee-EEEeecCCcceEEEEeC
Q 024436 25 VVQYQIEG--AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWL-HFARTSPNR---NHI-SVILSGDKTGRLMKYDP 97 (268)
Q Consensus 25 ~~~i~~~~--~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~-~~~~~~~~~---~~~-~~~~~~~~~g~v~~~d~ 97 (268)
+++|.-+. .++-+++..+ .+.++++..|..|..|+.+..... ...+.++.- .|- ..+.++..+..|..+|-
T Consensus 187 ~~rinc~Se~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv 264 (499)
T KOG0281|consen 187 LQRINCRSENSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDV 264 (499)
T ss_pred eeeecCCcccCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEec
Confidence 34444442 3455665555 333778888888888876532100 000000000 010 12345556667777777
Q ss_pred CCCeE-EEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEe-CCCCCCc-eEEcCCCCEEEEEec
Q 024436 98 ATKQV-TVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-LPGFPDN-IKRSPRGGFWVGIHS 174 (268)
Q Consensus 98 ~~~~~-~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~-l~g~Pdg-ia~d~dG~l~va~~~ 174 (268)
+||+. .++...-..--++.|+. | ..|+-+..+.|.+|+++.+.. ..... +-|.-.. =.+|=|.++.|+..+
T Consensus 265 ~tge~l~tlihHceaVLhlrf~n-g--~mvtcSkDrsiaVWdm~sps~---it~rrVLvGHrAaVNvVdfd~kyIVsASg 338 (499)
T KOG0281|consen 265 NTGEPLNTLIHHCEAVLHLRFSN-G--YMVTCSKDRSIAVWDMASPTD---ITLRRVLVGHRAAVNVVDFDDKYIVSASG 338 (499)
T ss_pred cCCchhhHHhhhcceeEEEEEeC-C--EEEEecCCceeEEEeccCchH---HHHHHHHhhhhhheeeeccccceEEEecC
Confidence 77764 33333333445788874 3 457778889999999975321 00111 2121111 123444567777766
Q ss_pred CCCcceeeeEee-Cccceeeeecc
Q 024436 175 RRKGISKLVLSF-PWIGNVLIKLP 197 (268)
Q Consensus 175 ~~~~~~~~v~~~-~~~g~~l~~i~ 197 (268)
.++ +... ..++++++.+.
T Consensus 339 DRT-----ikvW~~st~efvRtl~ 357 (499)
T KOG0281|consen 339 DRT-----IKVWSTSTCEFVRTLN 357 (499)
T ss_pred Cce-----EEEEeccceeeehhhh
Confidence 664 4333 35566665554
No 349
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=43.05 E-value=2.4e+02 Score=25.03 Aligned_cols=100 Identities=20% Similarity=0.327 Sum_probs=55.0
Q ss_pred ceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEc-CCCC-----CeeEEEeecCCcceEEEEeCCCCeEEEeecCCC
Q 024436 37 ESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFART-SPNR-----NHISVILSGDKTGRLMKYDPATKQVTVLLGNLS 110 (268)
Q Consensus 37 ~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~-~~~~-----~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~ 110 (268)
-.-+|.++-+ .+++.-||.|.++|.++......... .+.+ .....+.++.-..+|-.||+.+ +.....+.
T Consensus 58 L~c~F~d~~~-~~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~---~~~~~~~d 133 (323)
T KOG1036|consen 58 LDCAFADEST-IVTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRN---KVVVGTFD 133 (323)
T ss_pred eeeeccCCce-EEEeccCceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccc---cccccccc
Confidence 3456776665 77788899999998875421111111 0111 0112344556667888899873 22222333
Q ss_pred CcceE-EEccCCCEEEEEecCCcEEEEEEccC
Q 024436 111 FPNGV-ALSEDGNYILLAETTSCRILRYWLKT 141 (268)
Q Consensus 111 ~pnGi-a~spdg~~lyva~~~~~~I~~~~~~~ 141 (268)
.++-| +.+-.|+.|.|. +...++..||+..
T Consensus 134 ~~kkVy~~~v~g~~LvVg-~~~r~v~iyDLRn 164 (323)
T KOG1036|consen 134 QGKKVYCMDVSGNRLVVG-TSDRKVLIYDLRN 164 (323)
T ss_pred cCceEEEEeccCCEEEEe-ecCceEEEEEccc
Confidence 33322 233345556553 4567888999863
No 350
>PF15416 DUF4623: Domain of unknown function (DUF4623)
Probab=42.66 E-value=2.6e+02 Score=25.32 Aligned_cols=57 Identities=21% Similarity=0.258 Sum_probs=33.0
Q ss_pred CCCEEEEEecCCcEEEEEEccCCCCCceeEEE-eCC-----CCCCceEEcCCCCEEEEEecCC
Q 024436 120 DGNYILLAETTSCRILRYWLKTSKAGTIEIVA-QLP-----GFPDNIKRSPRGGFWVGIHSRR 176 (268)
Q Consensus 120 dg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~-~l~-----g~Pdgia~d~dG~l~va~~~~~ 176 (268)
||+++.|..+.....+-.+++.=+.|....+. ++. -+|-+|.--.+|++|++.-.+.
T Consensus 142 DGe~VLvvsR~~~~pHLLkvsdLK~g~inpI~LdlTgVtgGTf~yNmgAl~nGH~Y~asLSG~ 204 (442)
T PF15416_consen 142 DGEHVLVVSRGTTKPHLLKVSDLKAGEINPIPLDLTGVTGGTFSYNMGALVNGHSYLASLSGG 204 (442)
T ss_pred CCcEEEEEecCCCCceeeehhHhhcCCccceeeecccccCcccccchhhhcCCeEEEEeccCC
Confidence 67777777664433333333321223333221 221 2688898888999999987765
No 351
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=42.43 E-value=2.7e+02 Score=25.52 Aligned_cols=106 Identities=17% Similarity=0.134 Sum_probs=62.7
Q ss_pred CCcceEEECCCCC-EEEEEeCCCeEEEEeCC-C---CeEEEEEEcC------CCCCeeEEEeecCCcceEEEEeCCCCeE
Q 024436 34 IGPESLAFDALGE-GPYTGVSDGRIIKWHQD-Q---RRWLHFARTS------PNRNHISVILSGDKTGRLMKYDPATKQV 102 (268)
Q Consensus 34 ~~P~gia~~~dG~-~l~~~~~~g~I~~~~~~-g---~~~~~~~~~~------~~~~~~~~~~~~~~~g~v~~~d~~~~~~ 102 (268)
..-|+|+.+|.-+ ++.+..-||.|..|+-. + ..+..-+..+ =++.+- .+..+..+|.+-.+|...-+.
T Consensus 258 ~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~-lLasG~DdGt~~iwDLR~~~~ 336 (440)
T KOG0302|consen 258 KSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREP-LLASGGDDGTLSIWDLRQFKS 336 (440)
T ss_pred cchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcc-eeeecCCCceEEEEEhhhccC
Confidence 4678889988644 44455568998888742 2 1122211111 011111 223556677777777753222
Q ss_pred E----EeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEcc
Q 024436 103 T----VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLK 140 (268)
Q Consensus 103 ~----~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~ 140 (268)
. .+..+-.--..|.|+|....++.+....+.|..||+.
T Consensus 337 ~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 337 GQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred CCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence 2 1111222236899999988888888888999999986
No 352
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=42.14 E-value=2.2e+02 Score=24.28 Aligned_cols=112 Identities=16% Similarity=0.174 Sum_probs=62.2
Q ss_pred EEEecCC---CCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEE--EcC---CCCCeeEEEe-------ecCCcc
Q 024436 26 VQYQIEG---AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFA--RTS---PNRNHISVIL-------SGDKTG 90 (268)
Q Consensus 26 ~~i~~~~---~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~--~~~---~~~~~~~~~~-------~~~~~g 90 (268)
...++.+ ...--||.+-|....+|.-..+++|+.+++.....+... ... .+..+..++- --..+|
T Consensus 16 ~~~~vtGL~~ge~l~GID~Rpa~G~LYgl~~~g~lYtIn~~tG~aT~vg~s~~~~al~g~~~gvDFNP~aDRlRvvs~~G 95 (236)
T PF14339_consen 16 SSVAVTGLAAGESLVGIDFRPANGQLYGLGSTGRLYTINPATGAATPVGASPLTVALSGTAFGVDFNPAADRLRVVSNTG 95 (236)
T ss_pred ccEEeecccCCCeEEEEEeecCCCCEEEEeCCCcEEEEECCCCeEEEeecccccccccCceEEEecCcccCcEEEEccCC
Confidence 3445554 246789999996555666567899999998644333331 110 1112222211 112467
Q ss_pred eEEEEeCCCCeEEEeecCCCCcc------------eEEEccC------CCEEEEEecCCcEEEEE
Q 024436 91 RLMKYDPATKQVTVLLGNLSFPN------------GVALSED------GNYILLAETTSCRILRY 137 (268)
Q Consensus 91 ~v~~~d~~~~~~~~~~~~~~~pn------------Gia~spd------g~~lyva~~~~~~I~~~ 137 (268)
.=+|+++++|.+...-..+.++. +.|.... ...||--|...+.++.-
T Consensus 96 qNlR~npdtGav~~~Dg~L~y~~gd~~~G~~p~v~aaAYTNs~~g~~t~TtLy~ID~~~~~Lv~Q 160 (236)
T PF14339_consen 96 QNLRLNPDTGAVTIVDGNLAYAAGDMNAGTTPGVTAAAYTNSFAGATTSTTLYDIDTTLDALVTQ 160 (236)
T ss_pred cEEEECCCCCCceeccCccccCCCccccCCCCceEEEEEecccCCCccceEEEEEecCCCeEEEe
Confidence 77899999887554333333322 2333322 45677777777776665
No 353
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=41.77 E-value=2.6e+02 Score=25.07 Aligned_cols=137 Identities=19% Similarity=0.240 Sum_probs=71.2
Q ss_pred CcceEEECCCCCEEEEEeCCCeEEEEeC-CCCeEEEEEEc------------CCCCCeeEEEeecCCcceEEEEeCCCCe
Q 024436 35 GPESLAFDALGEGPYTGVSDGRIIKWHQ-DQRRWLHFART------------SPNRNHISVILSGDKTGRLMKYDPATKQ 101 (268)
Q Consensus 35 ~P~gia~~~dG~~l~~~~~~g~I~~~~~-~g~~~~~~~~~------------~~~~~~~~~~~~~~~~g~v~~~d~~~~~ 101 (268)
.-.||...|..+.+++...|..-+.+.. +|..|...... +|..+ ......+...-+|..|..++.-
T Consensus 57 ~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~en-kFAVgSgar~isVcy~E~ENdW 135 (361)
T KOG1523|consen 57 IVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKEN-KFAVGSGARLISVCYYEQENDW 135 (361)
T ss_pred ceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCc-eEEeccCccEEEEEEEecccce
Confidence 4567777777766777665554455544 44444332110 12111 1122233333455566554322
Q ss_pred EEEeecCCCCc-----ceEEEccCCCEEEEEecCCcEEEEEEc--cC---CC----CCceeEEEe-------CCCCCCce
Q 024436 102 VTVLLGNLSFP-----NGVALSEDGNYILLAETTSCRILRYWL--KT---SK----AGTIEIVAQ-------LPGFPDNI 160 (268)
Q Consensus 102 ~~~~~~~~~~p-----nGia~spdg~~lyva~~~~~~I~~~~~--~~---~~----~g~~~~~~~-------l~g~Pdgi 160 (268)
. +-..+..| +.+.+.|++ .|..+.+.+.+.++|.. .+ .. -+....|.+ .+|..+++
T Consensus 136 W--VsKhikkPirStv~sldWhpnn-VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v 212 (361)
T KOG1523|consen 136 W--VSKHIKKPIRSTVTSLDWHPNN-VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGV 212 (361)
T ss_pred e--hhhhhCCccccceeeeeccCCc-ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeee
Confidence 1 12344556 788898887 46666666666666642 21 10 122233332 13678899
Q ss_pred EEcCCCC-E-EEEEecC
Q 024436 161 KRSPRGG-F-WVGIHSR 175 (268)
Q Consensus 161 a~d~dG~-l-~va~~~~ 175 (268)
.+.++|+ | |++....
T Consensus 213 ~fs~sG~~lawv~Hds~ 229 (361)
T KOG1523|consen 213 LFSPSGNRLAWVGHDST 229 (361)
T ss_pred EeCCCCCEeeEecCCCc
Confidence 9999996 3 6655443
No 354
>PF13964 Kelch_6: Kelch motif
Probab=41.21 E-value=61 Score=19.60 Aligned_cols=24 Identities=8% Similarity=0.095 Sum_probs=13.4
Q ss_pred EEEeCCEEEEee-CCC-----CeEEEEeCC
Q 024436 244 VEEKDGNLWIGS-VNM-----PYAGLYNYS 267 (268)
Q Consensus 244 ~~~~~g~Lyv~s-~~~-----~~v~~~~~~ 267 (268)
++..+++|||-+ ..+ +.+-++|.+
T Consensus 7 ~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~ 36 (50)
T PF13964_consen 7 AVVVGGKIYVFGGYDNSGKYSNDVERYDPE 36 (50)
T ss_pred EEEECCEEEEECCCCCCCCccccEEEEcCC
Confidence 445677877733 333 456666554
No 355
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=40.13 E-value=3e+02 Score=25.27 Aligned_cols=103 Identities=17% Similarity=0.247 Sum_probs=65.3
Q ss_pred CcceEEECCCCCEEEEEeCCCeEEEEeCCCCe-EEEE--------EEcCCCCCeeEEEeecCCcceEEEEeCCCCeEE--
Q 024436 35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRR-WLHF--------ARTSPNRNHISVILSGDKTGRLMKYDPATKQVT-- 103 (268)
Q Consensus 35 ~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~-~~~~--------~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~-- 103 (268)
.-..+.+.+ ...+|+..-|+.|.+||..... .... ....+. ...+..+...-.+..+||.++.-.
T Consensus 262 ~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~---~~Ll~~gssdr~irl~DPR~~~gs~v 337 (423)
T KOG0313|consen 262 PVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPL---SKLLASGSSDRHIRLWDPRTGDGSVV 337 (423)
T ss_pred ceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcceeEeecccc---cceeeecCCCCceeecCCCCCCCcee
Confidence 345556665 5558888899999999864221 1111 001111 111122233335667899865322
Q ss_pred --EeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccC
Q 024436 104 --VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT 141 (268)
Q Consensus 104 --~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~ 141 (268)
.+..+-.+-.++-++|...+++++.+..+.+..||...
T Consensus 338 ~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS 377 (423)
T KOG0313|consen 338 SQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRS 377 (423)
T ss_pred EEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEecc
Confidence 24455567789999999999999999999999999864
No 356
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=38.21 E-value=2.5e+02 Score=23.89 Aligned_cols=28 Identities=14% Similarity=0.039 Sum_probs=21.1
Q ss_pred cceEEEccCCCEEEEEecCCcEEEEEEcc
Q 024436 112 PNGVALSEDGNYILLAETTSCRILRYWLK 140 (268)
Q Consensus 112 pnGia~spdg~~lyva~~~~~~I~~~~~~ 140 (268)
-...+|+|+|. |..+.++...|.+....
T Consensus 92 iyc~~ws~~ge-liatgsndk~ik~l~fn 119 (350)
T KOG0641|consen 92 IYCTAWSPCGE-LIATGSNDKTIKVLPFN 119 (350)
T ss_pred EEEEEecCccC-eEEecCCCceEEEEecc
Confidence 45789999996 77788777777666554
No 357
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=37.30 E-value=90 Score=18.99 Aligned_cols=26 Identities=15% Similarity=0.105 Sum_probs=19.1
Q ss_pred eEEEccCC---CEEEEEecCCcEEEEEEcc
Q 024436 114 GVALSEDG---NYILLAETTSCRILRYWLK 140 (268)
Q Consensus 114 Gia~spdg---~~lyva~~~~~~I~~~~~~ 140 (268)
.+.|||+. +.|.++| ..++|..+|+.
T Consensus 5 ~~kFsP~~~~~DLL~~~E-~~g~vhi~D~R 33 (43)
T PF10313_consen 5 CCKFSPEPGGNDLLAWAE-HQGRVHIVDTR 33 (43)
T ss_pred EEEeCCCCCcccEEEEEc-cCCeEEEEEcc
Confidence 57788643 4777777 66899999986
No 358
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=37.21 E-value=4.1e+02 Score=26.03 Aligned_cols=70 Identities=14% Similarity=0.236 Sum_probs=45.1
Q ss_pred EeecCCCCcceEEEccCCCEEEEE--ecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCC-EEEEEecC
Q 024436 104 VLLGNLSFPNGVALSEDGNYILLA--ETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG-FWVGIHSR 175 (268)
Q Consensus 104 ~~~~~~~~pnGia~spdg~~lyva--~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~-l~va~~~~ 175 (268)
..+.....-+.+.|..+|++|-+. +..+.+|+.+++.-.. ....|....|.|--+.+.|.-. ++||....
T Consensus 516 ~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~--sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~ 588 (733)
T KOG0650|consen 516 IVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRK--SQSPFRKSKGLVQRVKFHPSKPYLFVATQRS 588 (733)
T ss_pred EEEecCCccceeeeecCCceEEEeccCCCcceEEEEeccccc--ccCchhhcCCceeEEEecCCCceEEEEeccc
Confidence 344455556789999999987654 3455688888876321 1233433457888899998764 66666543
No 359
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=36.36 E-value=3.8e+02 Score=25.45 Aligned_cols=29 Identities=14% Similarity=0.268 Sum_probs=22.8
Q ss_pred ceEEEccCCCEEEEEecCCcEEEEEEccCCC
Q 024436 113 NGVALSEDGNYILLAETTSCRILRYWLKTSK 143 (268)
Q Consensus 113 nGia~spdg~~lyva~~~~~~I~~~~~~~~~ 143 (268)
.-+-++|||++|||-.. +.+.+|+++...
T Consensus 224 ~qllL~Pdg~~LYv~~g--~~~~v~~L~~r~ 252 (733)
T COG4590 224 SQLLLTPDGKTLYVRTG--SELVVALLDKRS 252 (733)
T ss_pred HhhEECCCCCEEEEecC--CeEEEEeecccc
Confidence 35889999999999765 678888887543
No 360
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=36.14 E-value=2.8e+02 Score=28.04 Aligned_cols=95 Identities=8% Similarity=0.049 Sum_probs=0.0
Q ss_pred CCCEEEEEecCCCcceeeeEeeCccceeeeeccccceee----------------------------------eeecccc
Q 024436 165 RGGFWVGIHSRRKGISKLVLSFPWIGNVLIKLPIDIVKI----------------------------------HSSLVKL 210 (268)
Q Consensus 165 dG~l~va~~~~~~~~~~~v~~~~~~g~~l~~i~~~~~~~----------------------------------~~~~~~~ 210 (268)
+|.+|++...+.- ++....+|+.+-+.......- ..++...
T Consensus 194 gg~lYv~t~~~~V-----~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~ 268 (764)
T TIGR03074 194 GDTLYLCTPHNKV-----IALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTS 268 (764)
T ss_pred CCEEEEECCCCeE-----EEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecC
Q ss_pred CCCcEEEEEECCC-CCEEEEEEcCCCCc-------------eeceEEEEEeCCEEEEeeC---------CCCeEEEEeCC
Q 024436 211 SGNGGMAMRISEQ-GNVLEILEEIGRKM-------------WRSISEVEEKDGNLWIGSV---------NMPYAGLYNYS 267 (268)
Q Consensus 211 ~~~~~~~~~~~~~-G~~~~~~~~~~g~~-------------~~~~s~~~~~~g~Lyv~s~---------~~~~v~~~~~~ 267 (268)
+.+ ++.+|.+ |+....+... |+. ....+.-+..++.+++|+. .+.+|.-+|.+
T Consensus 269 Dg~---LiALDA~TGk~~W~fg~~-G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~ 344 (764)
T TIGR03074 269 DAR---LIALDADTGKLCEDFGNN-GTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVN 344 (764)
T ss_pred CCe---EEEEECCCCCEEEEecCC-CceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECC
Q ss_pred C
Q 024436 268 S 268 (268)
Q Consensus 268 ~ 268 (268)
|
T Consensus 345 T 345 (764)
T TIGR03074 345 T 345 (764)
T ss_pred C
No 361
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=36.04 E-value=3.4e+02 Score=24.80 Aligned_cols=140 Identities=12% Similarity=0.192 Sum_probs=74.9
Q ss_pred CCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCe-EEEEE-EcCC-----CCCeeEEEeecCCcceEEEEeCCCC-eEEE
Q 024436 33 AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRR-WLHFA-RTSP-----NRNHISVILSGDKTGRLMKYDPATK-QVTV 104 (268)
Q Consensus 33 ~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~-~~~~~-~~~~-----~~~~~~~~~~~~~~g~v~~~d~~~~-~~~~ 104 (268)
...-+|+++++-.-++++...+++|-.||..-+. +..+- ..++ -.+-...++++..+..+-.+|-.+. .+..
T Consensus 193 i~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~ 272 (460)
T KOG0285|consen 193 IETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHV 272 (460)
T ss_pred hheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEE
Confidence 4568999999999988998899999999986432 11110 0000 0001122334433344444444433 3444
Q ss_pred eecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCCEEEEEecC
Q 024436 105 LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGGFWVGIHSR 175 (268)
Q Consensus 105 ~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~l~va~~~~ 175 (268)
+.+.-.--+.+.+.|-.-.+| +.+....|.-||+..++. ......-.--...++..|+-+++.+....
T Consensus 273 l~GH~~~V~~V~~~~~dpqvi-t~S~D~tvrlWDl~agkt--~~tlt~hkksvral~lhP~e~~fASas~d 340 (460)
T KOG0285|consen 273 LSGHTNPVASVMCQPTDPQVI-TGSHDSTVRLWDLRAGKT--MITLTHHKKSVRALCLHPKENLFASASPD 340 (460)
T ss_pred ecCCCCcceeEEeecCCCceE-EecCCceEEEeeeccCce--eEeeecccceeeEEecCCchhhhhccCCc
Confidence 544444345666665333464 667888999999874321 11111111124456666655555544443
No 362
>COG4222 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.83 E-value=3.6e+02 Score=24.91 Aligned_cols=41 Identities=24% Similarity=0.373 Sum_probs=27.4
Q ss_pred hhcCCCEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEE
Q 024436 19 NSSTQGVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIK 59 (268)
Q Consensus 19 ~~~~~~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~ 59 (268)
|+.+-....+.-....+-.|+.++++|+.||+-..+|+-.|
T Consensus 54 ~~~~~~~~~~~~~p~~G~Sgi~~d~~~~~f~~lSDng~g~K 94 (391)
T COG4222 54 NRGTGGGLPFNGQPVGGFSGITYDPQGDGYWALSDNGRGSK 94 (391)
T ss_pred ccCcccccccCCCCCCceeeeEEccCCCeEEEEeCCCcccc
Confidence 44444445555445567889999999987877666666543
No 363
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=34.38 E-value=59 Score=31.95 Aligned_cols=88 Identities=17% Similarity=0.212 Sum_probs=51.2
Q ss_pred CcceEEEEeCCCCeEEEeecCC--CCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeC----CCCCCceE
Q 024436 88 KTGRLMKYDPATKQVTVLLGNL--SFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL----PGFPDNIK 161 (268)
Q Consensus 88 ~~g~v~~~d~~~~~~~~~~~~~--~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l----~g~Pdgia 161 (268)
..|.||.++..+++.+...... ..---+.++++. ++.++.+.+++|.+|.+.....+....+... +-....++
T Consensus 53 S~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e-~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~ 131 (726)
T KOG3621|consen 53 SAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVE-YLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALE 131 (726)
T ss_pred ccceEEEEecCchhhhcccccCccceEEEEEecchh-HhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEE
Confidence 4566777766544433322211 111235677776 4777888889999998874322222333221 22456788
Q ss_pred EcCCC-CEEEEEecCC
Q 024436 162 RSPRG-GFWVGIHSRR 176 (268)
Q Consensus 162 ~d~dG-~l~va~~~~~ 176 (268)
++++| ++|+++..+.
T Consensus 132 Ws~~~~k~ysGD~~Gk 147 (726)
T KOG3621|consen 132 WSKNGMKLYSGDSQGK 147 (726)
T ss_pred ecccccEEeecCCCce
Confidence 99998 4888877653
No 364
>PF12275 DUF3616: Protein of unknown function (DUF3616); InterPro: IPR022060 This family of proteins is found in bacteria. Proteins in this family are typically between 335 and 392 amino acids in length. There is a conserved GLRGPV sequence motif.
Probab=34.37 E-value=1.4e+02 Score=26.85 Aligned_cols=63 Identities=22% Similarity=0.306 Sum_probs=31.8
Q ss_pred cceEEEccCCCEEEEEecCCcEEEEEEcc-CC---CCCceeEE-----EeCCCC------CCceEEcCCCCEEEEEecCC
Q 024436 112 PNGVALSEDGNYILLAETTSCRILRYWLK-TS---KAGTIEIV-----AQLPGF------PDNIKRSPRGGFWVGIHSRR 176 (268)
Q Consensus 112 pnGia~spdg~~lyva~~~~~~I~~~~~~-~~---~~g~~~~~-----~~l~g~------Pdgia~d~dG~l~va~~~~~ 176 (268)
+.+++..+|++ |+|++-...++.+.... .+ ..+....| .++|+. -.|++. .+|.||+....+.
T Consensus 2 ~Sa~~~~~d~~-l~va~DE~~~i~rL~~~~~~~~~~~~~~~~~~l~~~~~lp~~~~~e~DiEGla~-~~gyly~igSHS~ 79 (330)
T PF12275_consen 2 PSAAVQLPDGR-LWVASDETANIERLTLDDAGGEDRFGDHASFPLADFFDLPGPKDKEIDIEGLAY-ADGYLYVIGSHSR 79 (330)
T ss_pred CccceEcCCCe-EEEEecCCCCeeEEEecCCCcccccccccccccccccccCCCCCcccchhhhhc-cCCeEEEEccCcc
Confidence 34677788875 66665444444443332 21 11111111 112321 237888 6788998765543
No 365
>PF07202 Tcp10_C: T-complex protein 10 C-terminus; InterPro: IPR009852 Proteins in this entry include T-complex 10, involved in spermatogenesis in mice, and centromere protein J, which not only inhibits microtubule nucleation from the centrosome, but also depolymerises taxol-stabilised microtubules [, ]. These proteins share an approximately 180 residue C-terminal region which contains unsual G repreats [].
Probab=33.58 E-value=2.6e+02 Score=22.69 Aligned_cols=25 Identities=16% Similarity=0.194 Sum_probs=13.9
Q ss_pred ECCCCCEEEEEeCCCeEEEEeCCCC
Q 024436 41 FDALGEGPYTGVSDGRIIKWHQDQR 65 (268)
Q Consensus 41 ~~~dG~~l~~~~~~g~I~~~~~~g~ 65 (268)
+.|||....+...+|-|.+.-+||.
T Consensus 23 v~~dg~~~~v~f~NGDvK~~~pDg~ 47 (179)
T PF07202_consen 23 VSPDGKTVIVRFPNGDVKQTLPDGR 47 (179)
T ss_pred EcCCCCEEEEEEeCCCEeEEecCCc
Confidence 4556554555555555555555554
No 366
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=33.29 E-value=2.9e+02 Score=28.40 Aligned_cols=54 Identities=15% Similarity=0.117 Sum_probs=34.7
Q ss_pred CcceEEEEeCCCCeEEEe-ecCCCCcceEEEccCCCEEEE-Ee--c--CCcEEEEEEccC
Q 024436 88 KTGRLMKYDPATKQVTVL-LGNLSFPNGVALSEDGNYILL-AE--T--TSCRILRYWLKT 141 (268)
Q Consensus 88 ~~g~v~~~d~~~~~~~~~-~~~~~~pnGia~spdg~~lyv-a~--~--~~~~I~~~~~~~ 141 (268)
.+++|...|.++...+.+ ...-.-.-.-+|||||+.|-. +. . ....|++-+++.
T Consensus 327 ~~~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t 386 (912)
T TIGR02171 327 VTGNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNA 386 (912)
T ss_pred CCCeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhc
Confidence 345888888886566655 333222234689999998866 32 2 234689988874
No 367
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=33.12 E-value=3.9e+02 Score=24.61 Aligned_cols=60 Identities=17% Similarity=0.271 Sum_probs=32.2
Q ss_pred ceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEe-CCCCCCceEEcCCCCEEEEEecCC
Q 024436 113 NGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ-LPGFPDNIKRSPRGGFWVGIHSRR 176 (268)
Q Consensus 113 nGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~-l~g~Pdgia~d~dG~l~va~~~~~ 176 (268)
+++..++||+.+.+.. .+.+++-.-+|.. ....... .+....++.++++|.+|++...+.
T Consensus 242 ~~v~~~~dG~~~~vg~--~G~~~~s~d~G~~--~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~ 302 (398)
T PLN00033 242 STVNRSPDGDYVAVSS--RGNFYLTWEPGQP--YWQPHNRASARRIQNMGWRADGGLWLLTRGGG 302 (398)
T ss_pred eeEEEcCCCCEEEEEC--CccEEEecCCCCc--ceEEecCCCccceeeeeEcCCCCEEEEeCCce
Confidence 3467778886444443 3455553333311 0111111 123345788888999998876654
No 368
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=32.89 E-value=2.1e+02 Score=25.34 Aligned_cols=116 Identities=10% Similarity=0.095 Sum_probs=66.3
Q ss_pred EEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCC-e-EEEEEEcC---------CCC--C-eeEEEeecCCcc
Q 024436 25 VVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQR-R-WLHFARTS---------PNR--N-HISVILSGDKTG 90 (268)
Q Consensus 25 ~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~-~-~~~~~~~~---------~~~--~-~~~~~~~~~~~g 90 (268)
+..++-.....-.++.+.|+++.+.+ +.+..|..++.+.. . ...+.... .++ + +-...+.....+
T Consensus 115 v~~Ldteavg~i~cvew~Pns~klas-m~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~ 193 (370)
T KOG1007|consen 115 VASLDTEAVGKINCVEWEPNSDKLAS-MDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDS 193 (370)
T ss_pred hhcCCHHHhCceeeEEEcCCCCeeEE-eccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCC
Confidence 33344333334578889998886654 55888888876543 1 11111100 000 0 111112223456
Q ss_pred eEEEEeCCCCeEEE--eecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccC
Q 024436 91 RLMKYDPATKQVTV--LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT 141 (268)
Q Consensus 91 ~v~~~d~~~~~~~~--~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~ 141 (268)
.+..+|..|.+.-- --.....-..+.|.|+.+++.++-...+.|..||...
T Consensus 194 tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~ 246 (370)
T KOG1007|consen 194 TLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRK 246 (370)
T ss_pred cEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccC
Confidence 78888876432111 1123344567899999999999988889999998763
No 369
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=32.65 E-value=3.4e+02 Score=23.75 Aligned_cols=41 Identities=15% Similarity=-0.053 Sum_probs=31.7
Q ss_pred EEEecCC--CCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCe
Q 024436 26 VQYQIEG--AIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRR 66 (268)
Q Consensus 26 ~~i~~~~--~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~ 66 (268)
....+|. ..+-+=++++||+.+++....+|.|..++.-|..
T Consensus 34 ~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~ 76 (282)
T PF15492_consen 34 GKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE 76 (282)
T ss_pred EEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce
Confidence 3334444 4455789999999999999999999999987753
No 370
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.52 E-value=3.5e+02 Score=23.56 Aligned_cols=114 Identities=11% Similarity=0.068 Sum_probs=60.6
Q ss_pred EEecCCCCCcceEEECC--CCCEEEEEe------CCCeEEEEeCC-CCeEEEEEEc-CCCCCe--------eEEEeecCC
Q 024436 27 QYQIEGAIGPESLAFDA--LGEGPYTGV------SDGRIIKWHQD-QRRWLHFART-SPNRNH--------ISVILSGDK 88 (268)
Q Consensus 27 ~i~~~~~~~P~gia~~~--dG~~l~~~~------~~g~I~~~~~~-g~~~~~~~~~-~~~~~~--------~~~~~~~~~ 88 (268)
++..|++ .-+++-|+| ++++.++.. +.|+++..+.+ ++.+.+.-.. ..+.-| -.......+
T Consensus 3 ~~~tpgf-~GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~G 81 (311)
T KOG0277|consen 3 THTTPGF-HGYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASG 81 (311)
T ss_pred ceecCCc-ccceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEec
Confidence 3444543 357788888 576544432 57899888874 4333332110 111100 011223345
Q ss_pred cceEEEEeCCC--CeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccC
Q 024436 89 TGRLMKYDPAT--KQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT 141 (268)
Q Consensus 89 ~g~v~~~d~~~--~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~ 141 (268)
+|++..+|..- +-+..+.+.-..-..+.+++-.+..+++.+..+.|.-|+.+-
T Consensus 82 DGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r 136 (311)
T KOG0277|consen 82 DGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR 136 (311)
T ss_pred CceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCC
Confidence 56666565321 111222233333446777777777888889999999998763
No 371
>PF05567 Neisseria_PilC: Neisseria PilC beta-propeller domain; InterPro: IPR008707 This domain is found in several PilC protein sequences from Neisseria gonorrhoeae and Neisseria meningitidis. PilC is a phase-variable protein associated with pilus-mediated adherence of pathogenic Neisseria to target cells [].; PDB: 3HX6_A.
Probab=31.24 E-value=98 Score=27.75 Aligned_cols=54 Identities=20% Similarity=0.259 Sum_probs=28.4
Q ss_pred CcceEEEEeCCC-CeEEEeec------CCCCcceEEEccCC--CEEEEEecCCcEEEEEEccCC
Q 024436 88 KTGRLMKYDPAT-KQVTVLLG------NLSFPNGVALSEDG--NYILLAETTSCRILRYWLKTS 142 (268)
Q Consensus 88 ~~g~v~~~d~~~-~~~~~~~~------~~~~pnGia~spdg--~~lyva~~~~~~I~~~~~~~~ 142 (268)
....||.+|.++ |++..-.+ ++..|..+..+.|| +++|+.|. .+.||||++.+.
T Consensus 179 ~~~~lyi~d~~t~G~l~~~i~~~~~~~gl~~~~~~D~d~DG~~D~vYaGDl-~GnlwR~dl~~~ 241 (335)
T PF05567_consen 179 GGAALYILDADTTGALIKKIDVPGGSGGLSSPAVVDSDGDGYVDRVYAGDL-GGNLWRFDLSSA 241 (335)
T ss_dssp --EEEEEEETTT---EEEEEEE--STT-EEEEEEE-TTSSSEE-EEEEEET-TSEEEEEE--TT
T ss_pred CCcEEEEEECCCCCceEEEEecCCCCccccccEEEeccCCCeEEEEEEEcC-CCcEEEEECCCC
Confidence 346799999998 76533221 22233223233343 47898885 589999999753
No 372
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=31.23 E-value=5.1e+02 Score=25.30 Aligned_cols=104 Identities=17% Similarity=0.221 Sum_probs=59.8
Q ss_pred ceEEECCCCCEEEEEeCCCeEEEEeCC-CCeEEEEEEcCCCCCe-----e-EEEeecCCcceEEEEeCCCCeEE-Eee--
Q 024436 37 ESLAFDALGEGPYTGVSDGRIIKWHQD-QRRWLHFARTSPNRNH-----I-SVILSGDKTGRLMKYDPATKQVT-VLL-- 106 (268)
Q Consensus 37 ~gia~~~dG~~l~~~~~~g~I~~~~~~-g~~~~~~~~~~~~~~~-----~-~~~~~~~~~g~v~~~d~~~~~~~-~~~-- 106 (268)
..++.+.-..=+|+.-....|+|++.+ |..+..+...++.-+. . ..+..+..+|.|-.|||.+.... .+-
T Consensus 137 RDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~ 216 (703)
T KOG2321|consen 137 RDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAA 216 (703)
T ss_pred ccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecc
Confidence 444554433335555556789999875 4544445433222110 0 11234556789999999864322 111
Q ss_pred ---------cCCCCcceEEEccCCCEEEEEecCCcEEEEEEccC
Q 024436 107 ---------GNLSFPNGVALSEDGNYILLAETTSCRILRYWLKT 141 (268)
Q Consensus 107 ---------~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~ 141 (268)
+....+..|.|+.||=++ -..+.++.++.||+..
T Consensus 217 ~~v~s~pg~~~~~svTal~F~d~gL~~-aVGts~G~v~iyDLRa 259 (703)
T KOG2321|consen 217 SSVNSHPGGDAAPSVTALKFRDDGLHV-AVGTSTGSVLIYDLRA 259 (703)
T ss_pred cccCCCccccccCcceEEEecCCceeE-EeeccCCcEEEEEccc
Confidence 123346689999888434 3467789999999974
No 373
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=30.74 E-value=4.1e+02 Score=24.08 Aligned_cols=49 Identities=18% Similarity=0.144 Sum_probs=31.8
Q ss_pred eEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCc---eEEcCCCC
Q 024436 114 GVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDN---IKRSPRGG 167 (268)
Q Consensus 114 Gia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdg---ia~d~dG~ 167 (268)
-|.+..|.-++...-.....|.+|++.. .+-...+.-.|+| +++.|||+
T Consensus 53 yieW~ads~~ilC~~yk~~~vqvwsl~Q-----pew~ckIdeg~agls~~~WSPdgr 104 (447)
T KOG4497|consen 53 YIEWKADSCHILCVAYKDPKVQVWSLVQ-----PEWYCKIDEGQAGLSSISWSPDGR 104 (447)
T ss_pred heeeeccceeeeeeeeccceEEEEEeec-----ceeEEEeccCCCcceeeeECCCcc
Confidence 4677777767777777777999999863 2222333223444 57889995
No 374
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=30.74 E-value=3.8e+02 Score=23.63 Aligned_cols=39 Identities=15% Similarity=0.242 Sum_probs=23.8
Q ss_pred ceEEEEeCCCCeEEEeecCCCCcc-eE-EE-ccCCCEEEEEec
Q 024436 90 GRLMKYDPATKQVTVLLGNLSFPN-GV-AL-SEDGNYILLAET 129 (268)
Q Consensus 90 g~v~~~d~~~~~~~~~~~~~~~pn-Gi-a~-spdg~~lyva~~ 129 (268)
..+++||+.+.+++.+......+. +. +. .-+| .||+...
T Consensus 85 ~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g-~IYviGG 126 (346)
T TIGR03547 85 DDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNG-QAYFTGG 126 (346)
T ss_pred ccEEEEECCCCEEecCCCCCCCcccceeEEEEeCC-EEEEEcC
Confidence 468999999888887653222222 32 22 2355 5998743
No 375
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=30.19 E-value=3.2e+02 Score=26.83 Aligned_cols=28 Identities=18% Similarity=0.297 Sum_probs=24.2
Q ss_pred ceEEECCCCCEEEEEeCCCeEEEEeCCC
Q 024436 37 ESLAFDALGEGPYTGVSDGRIIKWHQDQ 64 (268)
Q Consensus 37 ~gia~~~dG~~l~~~~~~g~I~~~~~~g 64 (268)
..+..|.-|..+++.+.|+.|+.++..+
T Consensus 275 ~nL~lDssGt~L~AsCtD~sIy~ynm~s 302 (720)
T KOG0321|consen 275 VNLILDSSGTYLFASCTDNSIYFYNMRS 302 (720)
T ss_pred EEEEecCCCCeEEEEecCCcEEEEeccc
Confidence 4578999999999999999999998654
No 376
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=29.65 E-value=1.9e+02 Score=24.66 Aligned_cols=73 Identities=14% Similarity=0.135 Sum_probs=39.3
Q ss_pred ceEEEccCCCEEEEEecCCcEEEEEEccCCCCCce--eEEE-eCCCCCCceEEcCC-CCEEEEEecCCCcceeeeEeeCc
Q 024436 113 NGVALSEDGNYILLAETTSCRILRYWLKTSKAGTI--EIVA-QLPGFPDNIKRSPR-GGFWVGIHSRRKGISKLVLSFPW 188 (268)
Q Consensus 113 nGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~--~~~~-~l~g~Pdgia~d~d-G~l~va~~~~~~~~~~~v~~~~~ 188 (268)
-||.|-|....||-- +..++||.++...+..... ..+. .+.|.+-|+.+.|- .+|-|-...+.+ +..++.
T Consensus 30 ~GID~Rpa~G~LYgl-~~~g~lYtIn~~tG~aT~vg~s~~~~al~g~~~gvDFNP~aDRlRvvs~~GqN-----lR~npd 103 (236)
T PF14339_consen 30 VGIDFRPANGQLYGL-GSTGRLYTINPATGAATPVGASPLTVALSGTAFGVDFNPAADRLRVVSNTGQN-----LRLNPD 103 (236)
T ss_pred EEEEeecCCCCEEEE-eCCCcEEEEECCCCeEEEeecccccccccCceEEEecCcccCcEEEEccCCcE-----EEECCC
Confidence 478888876678755 5668888888765321111 1111 13344566666663 456554333322 444555
Q ss_pred cce
Q 024436 189 IGN 191 (268)
Q Consensus 189 ~g~ 191 (268)
+|.
T Consensus 104 tGa 106 (236)
T PF14339_consen 104 TGA 106 (236)
T ss_pred CCC
Confidence 555
No 377
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=29.56 E-value=1.3e+02 Score=29.89 Aligned_cols=29 Identities=31% Similarity=0.429 Sum_probs=23.4
Q ss_pred CcceEEECCCCCEEEEEeCCCeEEEEeCC
Q 024436 35 GPESLAFDALGEGPYTGVSDGRIIKWHQD 63 (268)
Q Consensus 35 ~P~gia~~~dG~~l~~~~~~g~I~~~~~~ 63 (268)
.-+++.++++-.++.++..+|.|-.||..
T Consensus 72 pIeSl~f~~~E~LlaagsasgtiK~wDle 100 (825)
T KOG0267|consen 72 PIESLTFDTSERLLAAGSASGTIKVWDLE 100 (825)
T ss_pred cceeeecCcchhhhcccccCCceeeeehh
Confidence 46778888888888888888888888765
No 378
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=29.41 E-value=3.8e+02 Score=23.34 Aligned_cols=143 Identities=12% Similarity=0.059 Sum_probs=0.0
Q ss_pred EEEEecCCCCCcc--eEEECCCCCEEEEEeC-----CCeEEEEeCCCCeEEEEEEcCCCCC------------eeEEEee
Q 024436 25 VVQYQIEGAIGPE--SLAFDALGEGPYTGVS-----DGRIIKWHQDQRRWLHFARTSPNRN------------HISVILS 85 (268)
Q Consensus 25 ~~~i~~~~~~~P~--gia~~~dG~~l~~~~~-----~g~I~~~~~~g~~~~~~~~~~~~~~------------~~~~~~~ 85 (268)
+..-.++.+..|. .-+..-++++|+.+-. ...++++++....|+.......... |+.--..
T Consensus 102 ~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~ 181 (323)
T TIGR03548 102 LICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGS 181 (323)
T ss_pred eeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCC
Q ss_pred cCCcceEEEEeCCCCeEEEeecCCCCc------ceEEEccCCCEEEEEecCC----------------------------
Q 024436 86 GDKTGRLMKYDPATKQVTVLLGNLSFP------NGVALSEDGNYILLAETTS---------------------------- 131 (268)
Q Consensus 86 ~~~~g~v~~~d~~~~~~~~~~~~~~~p------nGia~spdg~~lyva~~~~---------------------------- 131 (268)
......++++|+++.+++.+......+ ...++.-.++.|||.-..+
T Consensus 182 ~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (323)
T TIGR03548 182 NIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFL 261 (323)
T ss_pred CccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhC
Q ss_pred ---------cEEEEEEccCCCCCceeEEEeCC--CCCCceEEcCCCCEEE
Q 024436 132 ---------CRILRYWLKTSKAGTIEIVAQLP--GFPDNIKRSPRGGFWV 170 (268)
Q Consensus 132 ---------~~I~~~~~~~~~~g~~~~~~~l~--g~Pdgia~d~dG~l~v 170 (268)
+.+.+||+.. .....+..+| .....-++--+++||+
T Consensus 262 ~~~~~~~~~~~v~~yd~~~---~~W~~~~~~p~~~r~~~~~~~~~~~iyv 308 (323)
T TIGR03548 262 KPPEWYNWNRKILIYNVRT---GKWKSIGNSPFFARCGAALLLTGNNIFS 308 (323)
T ss_pred CCccccCcCceEEEEECCC---CeeeEcccccccccCchheEEECCEEEE
No 379
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=29.22 E-value=5.9e+02 Score=25.39 Aligned_cols=57 Identities=18% Similarity=0.257 Sum_probs=37.7
Q ss_pred ceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEe---CCC---CCCceEEcCCCCEEEEEecC
Q 024436 113 NGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ---LPG---FPDNIKRSPRGGFWVGIHSR 175 (268)
Q Consensus 113 nGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~---l~g---~Pdgia~d~dG~l~va~~~~ 175 (268)
-|-.|+|++. .+++....+..+.|...+ .+.+.. +.| ...++++||.|.++++....
T Consensus 320 ~g~lw~~n~~-~ii~~g~~Gg~hlWkt~d-----~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~D 382 (764)
T KOG1063|consen 320 WGGLWSPNSN-VIIAHGRTGGFHLWKTKD-----KTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLD 382 (764)
T ss_pred eeEEEcCCCC-EEEEecccCcEEEEeccC-----ccceeeccccccccccceeeeecCCCCEEEEeccc
Confidence 4778899986 678888888777777322 111222 222 35679999999977766543
No 380
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=29.04 E-value=5.3e+02 Score=24.84 Aligned_cols=85 Identities=16% Similarity=0.173 Sum_probs=51.7
Q ss_pred ecCCcceEEEEeCCCCeEEEeecCCCCcceEEE---ccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceE
Q 024436 85 SGDKTGRLMKYDPATKQVTVLLGNLSFPNGVAL---SEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIK 161 (268)
Q Consensus 85 ~~~~~g~v~~~d~~~~~~~~~~~~~~~pnGia~---spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia 161 (268)
-+...|.|+.++-..|+++........++++.- +.+-..|| +-....++..|...... ....+...+-.+-.++
T Consensus 75 lgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciy-S~~ad~~v~~~~~~~~~--~~~~~~~~~~~~~sl~ 151 (541)
T KOG4547|consen 75 LGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIY-SVGADLKVVYILEKEKV--IIRIWKEQKPLVSSLC 151 (541)
T ss_pred eecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceE-ecCCceeEEEEecccce--eeeeeccCCCccceEE
Confidence 456789999998888888877665555554433 33333344 44455677777765321 1222322333688999
Q ss_pred EcCCCCEEEEE
Q 024436 162 RSPRGGFWVGI 172 (268)
Q Consensus 162 ~d~dG~l~va~ 172 (268)
+.+||.+.+..
T Consensus 152 is~D~~~l~~a 162 (541)
T KOG4547|consen 152 ISPDGKILLTA 162 (541)
T ss_pred EcCCCCEEEec
Confidence 99999865543
No 381
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=28.84 E-value=12 Score=19.55 Aligned_cols=9 Identities=33% Similarity=0.767 Sum_probs=6.0
Q ss_pred EEccCCCEEE
Q 024436 116 ALSEDGNYIL 125 (268)
Q Consensus 116 a~spdg~~ly 125 (268)
.|||||+ ||
T Consensus 7 ~FSp~Gr-l~ 15 (23)
T PF10584_consen 7 TFSPDGR-LF 15 (23)
T ss_dssp SBBTTSS-BH
T ss_pred eECCCCe-EE
Confidence 4788886 43
No 382
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.61 E-value=2.5e+02 Score=25.97 Aligned_cols=79 Identities=18% Similarity=0.091 Sum_probs=49.8
Q ss_pred EEEEeCCCCe-EEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEE--eCCCCCCceEEcCCC-C
Q 024436 92 LMKYDPATKQ-VTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVA--QLPGFPDNIKRSPRG-G 167 (268)
Q Consensus 92 v~~~d~~~~~-~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~--~l~g~Pdgia~d~dG-~ 167 (268)
+..+++.+-+ .+.+.....+-.+|+|||..+-|....+..++|..+++... .++. ..+..+...++|-|. +
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~-----~~vssy~a~~~~wSC~wDlde~h 249 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETS-----CVVSSYIAYNQIWSCCWDLDERH 249 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccc-----eeeeheeccCCceeeeeccCCcc
Confidence 6666654322 22333444566799999998756666778899999998742 1111 234568889999776 3
Q ss_pred -EEEEEecC
Q 024436 168 -FWVGIHSR 175 (268)
Q Consensus 168 -l~va~~~~ 175 (268)
+|.+...+
T Consensus 250 ~IYaGl~nG 258 (463)
T KOG1645|consen 250 VIYAGLQNG 258 (463)
T ss_pred eeEEeccCc
Confidence 55554443
No 383
>TIGR03803 Gloeo_Verruco Gloeo_Verruco repeat. This model describes a rare protein repeat, found so far in two species of Verrucomicrobia (Chthoniobacter flavus and Verrucomicrobium spinosum) and in four different proteins of Gloeobacter violaceus PCC7421. In the Verrucomicrobial species, the repeat region is followed by a PEP-CTERM protein-sorting signal, suggesting an extracellular location.
Probab=28.48 E-value=92 Score=17.85 Aligned_cols=12 Identities=8% Similarity=0.099 Sum_probs=5.4
Q ss_pred CCeEEEEeCCCC
Q 024436 54 DGRIIKWHQDQR 65 (268)
Q Consensus 54 ~g~I~~~~~~g~ 65 (268)
.|.|+|++++|.
T Consensus 16 ~GTvf~~~~~g~ 27 (34)
T TIGR03803 16 FGTLYRLSTAGG 27 (34)
T ss_pred ceeEEEEcCCCC
Confidence 344444444443
No 384
>PRK10115 protease 2; Provisional
Probab=28.06 E-value=1.8e+02 Score=28.96 Aligned_cols=58 Identities=21% Similarity=0.116 Sum_probs=35.0
Q ss_pred cceEEEccCCCEEEEEecCCc----EEEEEEccCCCCCceeEEEeCCCCCCceEEcCCCC-EEEEEe
Q 024436 112 PNGVALSEDGNYILLAETTSC----RILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPRGG-FWVGIH 173 (268)
Q Consensus 112 pnGia~spdg~~lyva~~~~~----~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~dG~-l~va~~ 173 (268)
-.++.+||||++|.++....+ +|++.+++++..- .+ .+++...++++.+||+ +|++..
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l-~~---~i~~~~~~~~w~~D~~~~~y~~~ 191 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWY-PE---LLDNVEPSFVWANDSWTFYYVRK 191 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCC-Cc---cccCcceEEEEeeCCCEEEEEEe
Confidence 457899999998877654433 5777777643210 11 1233334688888875 666554
No 385
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=28.06 E-value=6.6e+02 Score=25.65 Aligned_cols=84 Identities=18% Similarity=0.269 Sum_probs=58.4
Q ss_pred CcceEEEEeCCCCeEE-EeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEE-e-CCCCCCceEEcC
Q 024436 88 KTGRLMKYDPATKQVT-VLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVA-Q-LPGFPDNIKRSP 164 (268)
Q Consensus 88 ~~g~v~~~d~~~~~~~-~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~-~-l~g~Pdgia~d~ 164 (268)
....+++......... ....+...+.|++.+--++.+|.+|.....+.+.++++.. +.++. . + ..|..+++++
T Consensus 457 ~~~~i~~~~~~~~~~~~~~~~g~~~~~~lavD~~~~~~y~tDe~~~~i~v~~~~g~~---~~vl~~~~l-~~~r~~~v~p 532 (877)
T KOG1215|consen 457 SDEKICRASQDGSSECELCGDGLCIPEGLAVDWIGDNIYWTDEGNCLIEVADLDGSS---RKVLVSKDL-DLPRSIAVDP 532 (877)
T ss_pred cCCeEeeeccCCCccceEeccCccccCcEEEEeccCCceecccCCceeEEEEccCCc---eeEEEecCC-CCccceeecc
Confidence 3344554444322222 2456788899999998888999999999999999977632 23332 2 4 5799999999
Q ss_pred C-CCEEEEEecC
Q 024436 165 R-GGFWVGIHSR 175 (268)
Q Consensus 165 d-G~l~va~~~~ 175 (268)
. |-++..+|+.
T Consensus 533 ~~g~~~wtd~~~ 544 (877)
T KOG1215|consen 533 EKGLMFWTDWGQ 544 (877)
T ss_pred ccCeeEEecCCC
Confidence 5 5577777774
No 386
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=28.01 E-value=1.2e+02 Score=17.21 Aligned_cols=18 Identities=17% Similarity=0.084 Sum_probs=11.5
Q ss_pred EEEEEecCCcEEEEEEccC
Q 024436 123 YILLAETTSCRILRYWLKT 141 (268)
Q Consensus 123 ~lyva~~~~~~I~~~~~~~ 141 (268)
.+|+. +.++.|+.+|.++
T Consensus 2 ~v~~~-~~~g~l~AlD~~T 19 (38)
T PF01011_consen 2 RVYVG-TPDGYLYALDAKT 19 (38)
T ss_dssp EEEEE-TTTSEEEEEETTT
T ss_pred EEEEe-CCCCEEEEEECCC
Confidence 36665 6667777777664
No 387
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=27.68 E-value=1.4e+02 Score=17.83 Aligned_cols=25 Identities=12% Similarity=0.092 Sum_probs=17.7
Q ss_pred EEEEEeCCEEEEeeCCCCeEEEEeCC
Q 024436 242 SEVEEKDGNLWIGSVNMPYAGLYNYS 267 (268)
Q Consensus 242 s~~~~~~g~Lyv~s~~~~~v~~~~~~ 267 (268)
..+...++++|++... +.+.++|.+
T Consensus 5 ~~v~v~g~yaYva~~~-~Gl~IvDIS 29 (42)
T PF08309_consen 5 RDVAVSGNYAYVADGN-NGLVIVDIS 29 (42)
T ss_pred EEEEEECCEEEEEeCC-CCEEEEECC
Confidence 3556688899999554 557777765
No 388
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=27.54 E-value=5.1e+02 Score=25.43 Aligned_cols=27 Identities=22% Similarity=0.318 Sum_probs=14.5
Q ss_pred eceEEEEEe--CCEEEEeeCCCCeEEEEeC
Q 024436 239 RSISEVEEK--DGNLWIGSVNMPYAGLYNY 266 (268)
Q Consensus 239 ~~~s~~~~~--~g~Lyv~s~~~~~v~~~~~ 266 (268)
..++....+ |++|.++|.. +++-.+|+
T Consensus 608 kwiS~msihp~GDnli~gs~d-~k~~WfDl 636 (733)
T KOG0650|consen 608 KWISSMSIHPNGDNLILGSYD-KKMCWFDL 636 (733)
T ss_pred eeeeeeeecCCCCeEEEecCC-CeeEEEEc
Confidence 345555443 4667777654 44445554
No 389
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=27.38 E-value=97 Score=16.57 Aligned_cols=13 Identities=31% Similarity=0.450 Sum_probs=6.1
Q ss_pred cceEEEEeCCCCe
Q 024436 89 TGRLMKYDPATKQ 101 (268)
Q Consensus 89 ~g~v~~~d~~~~~ 101 (268)
+|.++.+|.++|+
T Consensus 15 ~g~l~a~d~~~G~ 27 (33)
T smart00564 15 DGTLYALDAKTGE 27 (33)
T ss_pred CCEEEEEEcccCc
Confidence 3445555554443
No 390
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=27.34 E-value=4.6e+02 Score=23.52 Aligned_cols=84 Identities=13% Similarity=0.193 Sum_probs=44.0
Q ss_pred CcceEEEEeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEc-CC-
Q 024436 88 KTGRLMKYDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRS-PR- 165 (268)
Q Consensus 88 ~~g~v~~~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d-~d- 165 (268)
+...|..||.-..+...-..-..---+|.+++| +|.|.- .++|++|...+. +.....+-+.+ .|.|++.- +.
T Consensus 73 ~pNkviIWDD~k~~~i~el~f~~~I~~V~l~r~--riVvvl--~~~I~VytF~~n-~k~l~~~et~~-NPkGlC~~~~~~ 146 (346)
T KOG2111|consen 73 PPNKVIIWDDLKERCIIELSFNSEIKAVKLRRD--RIVVVL--ENKIYVYTFPDN-PKLLHVIETRS-NPKGLCSLCPTS 146 (346)
T ss_pred CCceEEEEecccCcEEEEEEeccceeeEEEcCC--eEEEEe--cCeEEEEEcCCC-hhheeeeeccc-CCCceEeecCCC
Confidence 346788887431221111111122357899887 455553 379999987531 11223333332 58887653 32
Q ss_pred CCEEEEEecCCC
Q 024436 166 GGFWVGIHSRRK 177 (268)
Q Consensus 166 G~l~va~~~~~~ 177 (268)
..-+++..+..+
T Consensus 147 ~k~~LafPg~k~ 158 (346)
T KOG2111|consen 147 NKSLLAFPGFKT 158 (346)
T ss_pred CceEEEcCCCcc
Confidence 345666666544
No 391
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=26.99 E-value=9.2e+02 Score=26.93 Aligned_cols=98 Identities=16% Similarity=0.217 Sum_probs=52.6
Q ss_pred cceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcCCCCCeeEEEeecCCcceEEEEeCCCCeEEEeecCCC---Cc
Q 024436 36 PESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRNHISVILSGDKTGRLMKYDPATKQVTVLLGNLS---FP 112 (268)
Q Consensus 36 P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~---~p 112 (268)
-.|+..+++|..+ ..+++++++++++...|...... .+.+| ..+....+|.+|.=+. ..+.-+-.+.. +.
T Consensus 365 LTgv~~~~~ge~l--RlHd~~LY~~d~~~~~Wk~~~~~-~d~~~--S~Ls~qgdG~lYAk~~--~~l~nLSs~~~~~~~v 437 (1774)
T PF11725_consen 365 LTGVHTDPDGEQL--RLHDDRLYQFDPNTARWKPPPDK-SDTPF--SSLSRQGDGKLYAKDD--DTLVNLSSGQMSEAEV 437 (1774)
T ss_pred hhccccCCCCCeE--EeecCceeeeccccceecCCCCc-ccchh--hhhcccCCCceEecCC--CceeecCCCCcchhhh
Confidence 4566677777643 45788888888886667632110 01111 1123456788887222 22332322211 11
Q ss_pred c---eEEEccCCCEEEEEecCCcEEEEEEcc
Q 024436 113 N---GVALSEDGNYILLAETTSCRILRYWLK 140 (268)
Q Consensus 113 n---Gia~spdg~~lyva~~~~~~I~~~~~~ 140 (268)
. ...++++|+....++.....+...+++
T Consensus 438 ~~l~sfSv~~~g~vA~L~~~d~q~~qL~~m~ 468 (1774)
T PF11725_consen 438 DKLKSFSVAPDGTVAMLTGKDGQTLQLHDMS 468 (1774)
T ss_pred hhcccccccCCCceeeeecCCCcceeeeccC
Confidence 1 245678887667787777775555554
No 392
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=26.75 E-value=5.3e+02 Score=24.12 Aligned_cols=138 Identities=12% Similarity=0.147 Sum_probs=75.3
Q ss_pred CcceEEECC-CCCEEEEEeCCCeEEEEeCC-----CCeEEEEEEc-----CCCCCeeEEEeecCCcceEEEEeCCCC-e-
Q 024436 35 GPESLAFDA-LGEGPYTGVSDGRIIKWHQD-----QRRWLHFART-----SPNRNHISVILSGDKTGRLMKYDPATK-Q- 101 (268)
Q Consensus 35 ~P~gia~~~-dG~~l~~~~~~g~I~~~~~~-----g~~~~~~~~~-----~~~~~~~~~~~~~~~~g~v~~~d~~~~-~- 101 (268)
.-..+.+.| ....+.++.-+++|...+-. +..|..-+.. .+.. ...++.....|.|+.+|...- +
T Consensus 288 ~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~s--e~~f~~~tddG~v~~~D~R~~~~~ 365 (463)
T KOG0270|consen 288 KVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHS--ENSFFVSTDDGTVYYFDIRNPGKP 365 (463)
T ss_pred ceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCC--ceeEEEecCCceEEeeecCCCCCc
Confidence 445566666 35666677777777766532 2223221110 0111 122334467799999988642 1
Q ss_pred EEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeC-CCCCCceEEcCCCCEEEEEecC
Q 024436 102 VTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQL-PGFPDNIKRSPRGGFWVGIHSR 175 (268)
Q Consensus 102 ~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l-~g~Pdgia~d~dG~l~va~~~~ 175 (268)
+-.+..+-.--.||.+++.-..+.++.+....+..|++++...+.... ... -|.-..++.+++--.+++..+.
T Consensus 366 vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~-~~~~~~rl~c~~~~~~~a~~la~GG~ 439 (463)
T KOG0270|consen 366 VWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKE-HSFKLGRLHCFALDPDVAFTLAFGGE 439 (463)
T ss_pred eeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccc-ccccccceeecccCCCcceEEEecCc
Confidence 222333334456899998877888888888888888877532211110 111 1345566777766555555443
No 393
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=26.69 E-value=3.1e+02 Score=26.85 Aligned_cols=44 Identities=11% Similarity=0.107 Sum_probs=27.7
Q ss_pred EeCCCCeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEE
Q 024436 95 YDPATKQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYW 138 (268)
Q Consensus 95 ~d~~~~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~ 138 (268)
+.-++.+++.-...-..-..-+|.+||++|.|+-...=+-|.||
T Consensus 141 V~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd 184 (671)
T PF15390_consen 141 VHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWD 184 (671)
T ss_pred eeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEec
Confidence 33333344444445555677899999999999976544444443
No 394
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=26.19 E-value=8e+02 Score=25.94 Aligned_cols=111 Identities=14% Similarity=0.185 Sum_probs=62.0
Q ss_pred CEEEEecCCC-CCcceEEECCCCCEEEEEeCCCeEEEEeCC-----------CCeEEEEEEcCCC-CCeeEEEeecCCcc
Q 024436 24 GVVQYQIEGA-IGPESLAFDALGEGPYTGVSDGRIIKWHQD-----------QRRWLHFARTSPN-RNHISVILSGDKTG 90 (268)
Q Consensus 24 ~~~~i~~~~~-~~P~gia~~~dG~~l~~~~~~g~I~~~~~~-----------g~~~~~~~~~~~~-~~~~~~~~~~~~~g 90 (268)
+...+.+|++ .+|.++.+..++-+.|=...++-..|+.-. +.. ...+..... ..+... -....|
T Consensus 232 ~n~l~~VP~G~D~ps~v~vc~~n~~~y~~~~d~p~~ri~~~rr~~~L~~~~~~vl-iv~s~~hk~k~~ff~l--lqt~~G 308 (1205)
T KOG1898|consen 232 GNFLLTVPGGSDGPSGVLVCAENYLLYRNLGDHPDVRIPIERRINELSDAEDGVL-IVSSAEHKTKSMFFFL--LQTEYG 308 (1205)
T ss_pred ceEEEEecCCCCCCcceEEecCceeeccccccCCCEEeccccccccCCccccccE-EEEeecccccCCeEEE--EEecCC
Confidence 5567777765 789999999998766655555555555321 111 111111111 112222 224567
Q ss_pred eEEEEe--CCCCeEEE----eecCCCCcceEEEccCCCEEEEE-ecCCcEEEEEE
Q 024436 91 RLMKYD--PATKQVTV----LLGNLSFPNGVALSEDGNYILLA-ETTSCRILRYW 138 (268)
Q Consensus 91 ~v~~~d--~~~~~~~~----~~~~~~~pnGia~spdg~~lyva-~~~~~~I~~~~ 138 (268)
.++++. +++..+.. ..++++..+-+.+...| +||++ +..+++++.|.
T Consensus 309 D~fk~tl~~d~d~v~el~lkYfDtvp~a~~L~I~k~G-fLf~~sE~~n~~lyq~~ 362 (1205)
T KOG1898|consen 309 DLFKLTLEHDGDNVVELRLKYFDTVPCALQLCILKTG-FLFVASEFGNHRLYQFE 362 (1205)
T ss_pred ceEEEEEecCCCcceeeeeehhcCCccceEEEEeccc-eEEEhhhccCcceeehh
Confidence 777653 33221111 24566667778888777 78875 66777777764
No 395
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=26.17 E-value=4.6e+02 Score=23.18 Aligned_cols=141 Identities=16% Similarity=0.178 Sum_probs=63.3
Q ss_pred CcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcCCCCCeeEEEeecCCcceEEEEeCCCCeE-----------E
Q 024436 35 GPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRNHISVILSGDKTGRLMKYDPATKQV-----------T 103 (268)
Q Consensus 35 ~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~-----------~ 103 (268)
.|.++....++..+++ ...|.|++-...|+.|........+ . +... ....+|+++.+... |.+ +
T Consensus 105 s~~~i~~l~~~~~~l~-~~~G~iy~T~DgG~tW~~~~~~~~g-s-~~~~-~r~~dG~~vavs~~-G~~~~s~~~G~~~w~ 179 (302)
T PF14870_consen 105 SPFGITALGDGSAELA-GDRGAIYRTTDGGKTWQAVVSETSG-S-INDI-TRSSDGRYVAVSSR-GNFYSSWDPGQTTWQ 179 (302)
T ss_dssp -EEEEEEEETTEEEEE-ETT--EEEESSTTSSEEEEE-S------EEEE-EE-TTS-EEEEETT-SSEEEEE-TT-SS-E
T ss_pred CeeEEEEcCCCcEEEE-cCCCcEEEeCCCCCCeeEcccCCcc-e-eEeE-EECCCCcEEEEECc-ccEEEEecCCCccce
Confidence 4666666666654433 4568888876677777654321111 0 1111 11233343333332 222 2
Q ss_pred Eeec-CCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEe--CC----CC-CCceEEcCCCCEEEEEecC
Q 024436 104 VLLG-NLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQ--LP----GF-PDNIKRSPRGGFWVGIHSR 175 (268)
Q Consensus 104 ~~~~-~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~--l~----g~-Pdgia~d~dG~l~va~~~~ 175 (268)
.... ....-..|.|+||+. |++.. ..+.|+.=+.. ...+.+.. .| ++ --.++..+++.+|++...+
T Consensus 180 ~~~r~~~~riq~~gf~~~~~-lw~~~-~Gg~~~~s~~~----~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G 253 (302)
T PF14870_consen 180 PHNRNSSRRIQSMGFSPDGN-LWMLA-RGGQIQFSDDP----DDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG 253 (302)
T ss_dssp EEE--SSS-EEEEEE-TTS--EEEEE-TTTEEEEEE-T----TEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT
T ss_pred EEccCccceehhceecCCCC-EEEEe-CCcEEEEccCC----CCccccccccCCcccCceeeEEEEecCCCCEEEEeCCc
Confidence 2211 123446799999985 77665 34555554411 12334433 22 11 1245788888999988776
Q ss_pred CCcceeeeEeeCcccee
Q 024436 176 RKGISKLVLSFPWIGNV 192 (268)
Q Consensus 176 ~~~~~~~v~~~~~~g~~ 192 (268)
. +.+-...|+-
T Consensus 254 ~------l~~S~DgGkt 264 (302)
T PF14870_consen 254 T------LLVSTDGGKT 264 (302)
T ss_dssp -------EEEESSTTSS
T ss_pred c------EEEeCCCCcc
Confidence 4 4444445553
No 396
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=25.57 E-value=4.2e+02 Score=26.12 Aligned_cols=94 Identities=13% Similarity=0.121 Sum_probs=54.1
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCeEE-------EEE-------Ec--CCCCCeeEEEeecCCcceEEEEeCCCCeEEE---
Q 024436 44 LGEGPYTGVSDGRIIKWHQDQRRWL-------HFA-------RT--SPNRNHISVILSGDKTGRLMKYDPATKQVTV--- 104 (268)
Q Consensus 44 dG~~l~~~~~~g~I~~~~~~g~~~~-------~~~-------~~--~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~--- 104 (268)
.-++||+..++|.|..++.....+. .+. .. .+ +... ++...++.++..||.++.++.-
T Consensus 63 ~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~~--lVsasGDsT~r~Wdvk~s~l~G~~~ 139 (720)
T KOG0321|consen 63 KEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GESL--LVSASGDSTIRPWDVKTSRLVGGRL 139 (720)
T ss_pred ccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-Ccee--EEEccCCceeeeeeeccceeeccee
Confidence 4677888888999987765432111 000 00 01 1111 1222333444455554444332
Q ss_pred eecCCCCcceEEEccCCCEEEEEecCCcEEEEEEcc
Q 024436 105 LLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLK 140 (268)
Q Consensus 105 ~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~ 140 (268)
..++-..--.++|.|+...+|++...++.|..||+.
T Consensus 140 ~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R 175 (720)
T KOG0321|consen 140 NLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCR 175 (720)
T ss_pred ecccccccchhhhccCCCcceeeccCCCcEEEEEEe
Confidence 233333445799999999999999999999999875
No 397
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=25.54 E-value=4.3e+02 Score=22.61 Aligned_cols=142 Identities=15% Similarity=0.182 Sum_probs=75.4
Q ss_pred CEEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcCCC----C-C------------------ee
Q 024436 24 GVVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPN----R-N------------------HI 80 (268)
Q Consensus 24 ~~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~~----~-~------------------~~ 80 (268)
....++.+ ..++-.++. +|.++|-..+..+|.|++...+........... + + |+
T Consensus 61 ~~~~Lp~~-~~GtG~vVY--ngslYY~~~~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWv 137 (250)
T PF02191_consen 61 RTYKLPYP-WQGTGHVVY--NGSLYYNKYNSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWV 137 (250)
T ss_pred eEEEEece-eccCCeEEE--CCcEEEEecCCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEE
Confidence 44455544 456666654 588899888899999999887654423222110 0 0 11
Q ss_pred EEEeecCCc--ceEEEEeCCCCeEEEeecC-CCC-cceEEEccCCCEEEEEecCC---cE-EEEEEccCCCCCceeE-EE
Q 024436 81 SVILSGDKT--GRLMKYDPATKQVTVLLGN-LSF-PNGVALSEDGNYILLAETTS---CR-ILRYWLKTSKAGTIEI-VA 151 (268)
Q Consensus 81 ~~~~~~~~~--g~v~~~d~~~~~~~~~~~~-~~~-pnGia~spdg~~lyva~~~~---~~-I~~~~~~~~~~g~~~~-~~ 151 (268)
.+.+.... -.|-++||++-+++.-+.- ... --|=+|---| .||++++.. .+ -+.||...++...... |.
T Consensus 138 -IYat~~~~g~ivvskld~~tL~v~~tw~T~~~k~~~~naFmvCG-vLY~~~s~~~~~~~I~yafDt~t~~~~~~~i~f~ 215 (250)
T PF02191_consen 138 -IYATEDNNGNIVVSKLDPETLSVEQTWNTSYPKRSAGNAFMVCG-VLYATDSYDTRDTEIFYAFDTYTGKEEDVSIPFP 215 (250)
T ss_pred -EEecCCCCCcEEEEeeCcccCceEEEEEeccCchhhcceeeEee-EEEEEEECCCCCcEEEEEEECCCCceeceeeeec
Confidence 11122223 3456888887766655421 111 1244666668 699998865 23 3557765332111111 11
Q ss_pred eCCCCCCceEEcCCC-CEEE
Q 024436 152 QLPGFPDNIKRSPRG-GFWV 170 (268)
Q Consensus 152 ~l~g~Pdgia~d~dG-~l~v 170 (268)
...+....|.-+|.. .||+
T Consensus 216 ~~~~~~~~l~YNP~dk~LY~ 235 (250)
T PF02191_consen 216 NPYGNISMLSYNPRDKKLYA 235 (250)
T ss_pred cccCceEeeeECCCCCeEEE
Confidence 111345566677755 4665
No 398
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=25.25 E-value=7.2e+02 Score=25.13 Aligned_cols=126 Identities=12% Similarity=0.138 Sum_probs=66.2
Q ss_pred CcceEEECCC-CCEEEEEeCCCeEEEEeCCCCe-E-EEE-E--------EcCCCCCeeEEEeecCCcceEEEEeCCCCeE
Q 024436 35 GPESLAFDAL-GEGPYTGVSDGRIIKWHQDQRR-W-LHF-A--------RTSPNRNHISVILSGDKTGRLMKYDPATKQV 102 (268)
Q Consensus 35 ~P~gia~~~d-G~~l~~~~~~g~I~~~~~~g~~-~-~~~-~--------~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~ 102 (268)
..+.+.|.|. ++.+++..+.|.+.+||..-.. + ..+ | ...|++.|+. ++..++.|-.+|..+.+.
T Consensus 178 SiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lA---TGGRDK~vkiWd~t~~~~ 254 (839)
T KOG0269|consen 178 SIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLA---TGGRDKMVKIWDMTDSRA 254 (839)
T ss_pred hhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceee---ecCCCccEEEEeccCCCc
Confidence 4556677773 6656667778999999864321 0 111 1 1245666664 223344444444443322
Q ss_pred --EEeecCCCCcceEEEccCCCEEEEEec--CCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcC
Q 024436 103 --TVLLGNLSFPNGVALSEDGNYILLAET--TSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSP 164 (268)
Q Consensus 103 --~~~~~~~~~pnGia~spdg~~lyva~~--~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~ 164 (268)
...+....--+-+.|-|+.++...+-+ ....|++||+.-+.+.. ..|..-.....+|+++.
T Consensus 255 ~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~-~t~~eH~~~vt~i~W~~ 319 (839)
T KOG0269|consen 255 KPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPY-ATFLEHTDSVTGIAWDS 319 (839)
T ss_pred cceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccc-eeeeccCccccceeccC
Confidence 222333343467899998775554332 34589999987443221 12211111345777766
No 399
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=24.26 E-value=78 Score=18.70 Aligned_cols=17 Identities=24% Similarity=0.385 Sum_probs=12.1
Q ss_pred CcchhHHHHHHHHHHhh
Q 024436 2 NSSLSFIAKSIVIFLFI 18 (268)
Q Consensus 2 ~~~~~~~~~~~~~~~~~ 18 (268)
+|..+.|++++++++.+
T Consensus 3 ~s~IaIIv~V~vg~~ii 19 (38)
T PF02439_consen 3 SSTIAIIVAVVVGMAII 19 (38)
T ss_pred cchhhHHHHHHHHHHHH
Confidence 46778888888776543
No 400
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=23.63 E-value=1.2e+02 Score=24.09 Aligned_cols=28 Identities=32% Similarity=0.362 Sum_probs=20.2
Q ss_pred CCcceEEEccCCCEEEEEecCCcEEEEEEcc
Q 024436 110 SFPNGVALSEDGNYILLAETTSCRILRYWLK 140 (268)
Q Consensus 110 ~~pnGia~spdg~~lyva~~~~~~I~~~~~~ 140 (268)
..||.|++|.||+ |-|+. .+.|+.++..
T Consensus 5 s~~~~l~WS~Dg~-laV~t--~~~v~IL~~~ 32 (173)
T PF12657_consen 5 SCPNALAWSEDGQ-LAVAT--GESVHILDPQ 32 (173)
T ss_pred CCCcCeeECCCCC-EEEEc--CCeEEEEecc
Confidence 4689999999997 55553 3677777444
No 401
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.07 E-value=3.1e+02 Score=26.44 Aligned_cols=49 Identities=22% Similarity=0.310 Sum_probs=26.8
Q ss_pred cceEEEEeCCCCeEEEeecCCCCc-ceEEEccCCCEEEEEecCCcEEEEEEc
Q 024436 89 TGRLMKYDPATKQVTVLLGNLSFP-NGVALSEDGNYILLAETTSCRILRYWL 139 (268)
Q Consensus 89 ~g~v~~~d~~~~~~~~~~~~~~~p-nGia~spdg~~lyva~~~~~~I~~~~~ 139 (268)
.|.|-.||.-..+.+....++..| -+|..+.||++|..| +. .-+...+.
T Consensus 450 ~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~T-c~-tyLlLi~t 499 (644)
T KOG2395|consen 450 KGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILAT-CK-TYLLLIDT 499 (644)
T ss_pred CCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEe-cc-cEEEEEEE
Confidence 344444444322333444555444 689999999988654 33 34444443
No 402
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=23.02 E-value=8.7e+02 Score=25.27 Aligned_cols=29 Identities=14% Similarity=0.121 Sum_probs=24.7
Q ss_pred CcceEEECCCCCEEEEEeCCCeEEEEeCC
Q 024436 35 GPESLAFDALGEGPYTGVSDGRIIKWHQD 63 (268)
Q Consensus 35 ~P~gia~~~dG~~l~~~~~~g~I~~~~~~ 63 (268)
+-.+.+.+||+++++...++++++.++.+
T Consensus 122 GI~a~~WSPD~Ella~vT~~~~l~~mt~~ 150 (928)
T PF04762_consen 122 GILAASWSPDEELLALVTGEGNLLLMTRD 150 (928)
T ss_pred cEEEEEECCCcCEEEEEeCCCEEEEEecc
Confidence 67888999999999988889999887544
No 403
>COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism]
Probab=22.35 E-value=5.5e+02 Score=25.46 Aligned_cols=20 Identities=15% Similarity=0.250 Sum_probs=15.3
Q ss_pred CCEEEEEecCCcEEEEEEccC
Q 024436 121 GNYILLAETTSCRILRYWLKT 141 (268)
Q Consensus 121 g~~lyva~~~~~~I~~~~~~~ 141 (268)
|+.||++-. .+++...|.+.
T Consensus 214 gdtlYvcTp-hn~v~ALDa~T 233 (773)
T COG4993 214 GDTLYVCTP-HNRVFALDAAT 233 (773)
T ss_pred CCEEEEecC-cceeEEeeccC
Confidence 458999865 67888888774
No 404
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=22.21 E-value=5.3e+02 Score=24.58 Aligned_cols=30 Identities=27% Similarity=0.299 Sum_probs=21.5
Q ss_pred CCcceEEEccCCCEEEEEecCCcEEEEEEccC
Q 024436 110 SFPNGVALSEDGNYILLAETTSCRILRYWLKT 141 (268)
Q Consensus 110 ~~pnGia~spdg~~lyva~~~~~~I~~~~~~~ 141 (268)
..|.-+++||.+.+|.+- ..++|.+|.+++
T Consensus 358 ~~~~~~~~Sp~~~~Ll~e--~~gki~~~~l~N 387 (733)
T COG4590 358 QAPQLVAMSPNQAYLLSE--DQGKIRLAQLEN 387 (733)
T ss_pred cCcceeeeCcccchheee--cCCceEEEEecC
Confidence 456778899988777543 457788887775
No 405
>PTZ00486 apyrase Superfamily; Provisional
Probab=21.99 E-value=3.2e+02 Score=24.73 Aligned_cols=48 Identities=17% Similarity=0.273 Sum_probs=0.0
Q ss_pred cEEEEEECCCCC---EEEEEEcCCCCceeceEE--EEEeCCEEEEeeCCCCeE
Q 024436 214 GGMAMRISEQGN---VLEILEEIGRKMWRSISE--VEEKDGNLWIGSVNMPYA 261 (268)
Q Consensus 214 ~~~~~~~~~~G~---~~~~~~~~~g~~~~~~s~--~~~~~g~Lyv~s~~~~~v 261 (268)
+|.+++++.+++ +...+.|.+|..-.+--. ++..+++|||||.+-...
T Consensus 134 TGiVy~i~~~~~~~~PwvIL~dGdG~~~kGfK~EWaTVKd~~LyVGs~Gkewt 186 (352)
T PTZ00486 134 TGIVYEIDIDKKKAYPRHILSDGNGNSDKGMKIEWATVYDDKLYVGSIGKEFT 186 (352)
T ss_pred ceEEEEEEcCCCcEeeEEEEecCCCCCCCCcceeeEEEECCEEEEecccceeE
No 406
>PLN00115 pollen allergen group 3; Provisional
Probab=21.90 E-value=3.5e+02 Score=20.33 Aligned_cols=43 Identities=19% Similarity=0.187 Sum_probs=31.6
Q ss_pred CCcchhHHHHHHHHHHhhhhcCCCEEEEecCCCCCcceEEECC
Q 024436 1 MNSSLSFIAKSIVIFLFINSSTQGVVQYQIEGAIGPESLAFDA 43 (268)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~P~gia~~~ 43 (268)
|+|+-++.|-..+.-||--.+-..-.++.+.+...|.-+++-.
T Consensus 1 ~~~~~~~~~~~~~a~l~~~~~~g~~v~F~V~~gSnp~yL~ll~ 43 (118)
T PLN00115 1 MSSLSFLLLAVALAALFAVGSCATEVTFKVGKGSSSTSLELVT 43 (118)
T ss_pred CchhHHHHHHHHHHHHhhhhhcCCceEEEECCCCCcceEEEEE
Confidence 5666667888888888887777767777777655688776543
No 407
>PRK13684 Ycf48-like protein; Provisional
Probab=21.88 E-value=5.7e+02 Score=22.70 Aligned_cols=45 Identities=13% Similarity=0.194 Sum_probs=30.8
Q ss_pred EEEEecCCCCCcceEEECCCCCEEEEEeCCCeEEEEeCCCCeEEEE
Q 024436 25 VVQYQIEGAIGPESLAFDALGEGPYTGVSDGRIIKWHQDQRRWLHF 70 (268)
Q Consensus 25 ~~~i~~~~~~~P~gia~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~ 70 (268)
-+....+.-....+|+|..+.+.++++ ..|.|++=...|+.|...
T Consensus 37 W~~~~~~~~~~l~~v~F~d~~~g~avG-~~G~il~T~DgG~tW~~~ 81 (334)
T PRK13684 37 WQVIDLPTEANLLDIAFTDPNHGWLVG-SNRTLLETNDGGETWEER 81 (334)
T ss_pred cEEEecCCCCceEEEEEeCCCcEEEEE-CCCEEEEEcCCCCCceEC
Confidence 344455544578889998777767666 468888866667777764
No 408
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=21.36 E-value=6e+02 Score=22.81 Aligned_cols=39 Identities=28% Similarity=0.373 Sum_probs=23.0
Q ss_pred ceEEEEeCCCCeEEEeecCCCC-c-ceEEEccCCCEEEEEec
Q 024436 90 GRLMKYDPATKQVTVLLGNLSF-P-NGVALSEDGNYILLAET 129 (268)
Q Consensus 90 g~v~~~d~~~~~~~~~~~~~~~-p-nGia~spdg~~lyva~~ 129 (268)
..+++||+.+.+++.+.. +.. + .+.++..-+..|||...
T Consensus 189 ~~v~~YD~~t~~W~~~~~-~p~~~~~~~a~v~~~~~iYv~GG 229 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGE-SPFLGTAGSAVVIKGNKLWLING 229 (376)
T ss_pred ceEEEEECCCCeeeECCc-CCCCCCCcceEEEECCEEEEEee
Confidence 468999999888877543 222 1 23333222336998653
No 409
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=20.79 E-value=9.1e+02 Score=24.67 Aligned_cols=145 Identities=16% Similarity=0.212 Sum_probs=80.6
Q ss_pred ecCCCCCcceEEECCCC-CEEEEEeCCCeEEEEeCCCCeEEEEEEcC---CCC---Cee--EEEeecCCcceEEEEeCCC
Q 024436 29 QIEGAIGPESLAFDALG-EGPYTGVSDGRIIKWHQDQRRWLHFARTS---PNR---NHI--SVILSGDKTGRLMKYDPAT 99 (268)
Q Consensus 29 ~~~~~~~P~gia~~~dG-~~l~~~~~~g~I~~~~~~g~~~~~~~~~~---~~~---~~~--~~~~~~~~~g~v~~~d~~~ 99 (268)
++.+...+..+.++.-. .+++.+..+.+|.+...++......-..+ +.+ .++ ..++++.....+.+.+.+.
T Consensus 432 p~~~~~~~~~~d~d~~~~~i~~~d~~~~~i~~~~~~~~~~~~~~~~g~~~~~~lavD~~~~~~y~tDe~~~~i~v~~~~g 511 (877)
T KOG1215|consen 432 PLEGIKNAVALDFDVLNNRIYWADLSDEKICRASQDGSSECELCGDGLCIPEGLAVDWIGDNIYWTDEGNCLIEVADLDG 511 (877)
T ss_pred EccCCccceEEEEEecCCEEEEEeccCCeEeeeccCCCccceEeccCccccCcEEEEeccCCceecccCCceeEEEEccC
Confidence 33333455555665533 44555667788887766665322211100 000 011 1123334444555555432
Q ss_pred Ce-EEEeecCCCCcceEEEccCCCEEEEEecCC-cEEEEEEccCCCCCceeEEEeC-CCCCCceEEcCCC-CEEEEEecC
Q 024436 100 KQ-VTVLLGNLSFPNGVALSEDGNYILLAETTS-CRILRYWLKTSKAGTIEIVAQL-PGFPDNIKRSPRG-GFWVGIHSR 175 (268)
Q Consensus 100 ~~-~~~~~~~~~~pnGia~spdg~~lyva~~~~-~~I~~~~~~~~~~g~~~~~~~l-~g~Pdgia~d~dG-~l~va~~~~ 175 (268)
.. ...+...+..|..++++|-...+|.+++.. .+|.+-.+++.. ....... -..|+|++.|-.. .+|-++...
T Consensus 512 ~~~~vl~~~~l~~~r~~~v~p~~g~~~wtd~~~~~~i~ra~~dg~~---~~~l~~~~~~~p~glt~d~~~~~~yw~d~~~ 588 (877)
T KOG1215|consen 512 SSRKVLVSKDLDLPRSIAVDPEKGLMFWTDWGQPPRIERASLDGSE---RAVLVTNGILWPNGLTIDYETDRLYWADAKL 588 (877)
T ss_pred CceeEEEecCCCCccceeeccccCeeEEecCCCCchhhhhcCCCCC---ceEEEeCCccCCCcceEEeecceeEEEcccC
Confidence 22 233345558899999999999999999874 467777777532 2333222 2479999999754 566666554
Q ss_pred C
Q 024436 176 R 176 (268)
Q Consensus 176 ~ 176 (268)
.
T Consensus 589 ~ 589 (877)
T KOG1215|consen 589 D 589 (877)
T ss_pred C
Confidence 3
No 410
>PF14977 FAM194: FAM194 protein
Probab=20.25 E-value=5.1e+02 Score=21.58 Aligned_cols=91 Identities=13% Similarity=0.185 Sum_probs=45.4
Q ss_pred ECCCCCEEEEEeCCCeEEEEeCCCCeEEEEEEcCCCCCeeEEEeecCCcceEE-EEeCCCCeEEEeecCCCCcce---EE
Q 024436 41 FDALGEGPYTGVSDGRIIKWHQDQRRWLHFARTSPNRNHISVILSGDKTGRLM-KYDPATKQVTVLLGNLSFPNG---VA 116 (268)
Q Consensus 41 ~~~dG~~l~~~~~~g~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~v~-~~d~~~~~~~~~~~~~~~pnG---ia 116 (268)
.-++|..+.+...||.-..+=|+|+........ ....+...++++.+.+.+. .+|+. |.-. .-.||| +.
T Consensus 10 ~Y~~g~~f~~~f~DGsg~i~YPSGnlAi~~~~~-~~~~~~~~v~eD~~~~~ilA~Fd~~-G~g~-----~y~~~g~~~l~ 82 (208)
T PF14977_consen 10 YYKNGRKFHYMFPDGSGQIFYPSGNLAICISPT-CRGGFTYIVYEDSPENTILALFDSS-GHGT-----CYHPNGNIWLV 82 (208)
T ss_pred eCCCCcEEEEEcCCCCEEEEeCCCCEEEEEecc-CCCceEEEEEecCCCCceEEEEcCC-CCEE-----EEcCCCCEEEE
Confidence 345566666666666665566777632211111 1112334444555544433 34443 3211 123444 66
Q ss_pred EccCCCEEEEEecCCcEEEEEEcc
Q 024436 117 LSEDGNYILLAETTSCRILRYWLK 140 (268)
Q Consensus 117 ~spdg~~lyva~~~~~~I~~~~~~ 140 (268)
+++.|. ++.|....++.+|.+.
T Consensus 83 l~~~gG--~~~D~~G~~~k~W~W~ 104 (208)
T PF14977_consen 83 LNQEGG--QYFDQKGNRVKKWNWS 104 (208)
T ss_pred EECCCC--EEEcCCCCEEEEEecC
Confidence 677765 2356666777777774
No 411
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=20.20 E-value=9.9e+02 Score=24.88 Aligned_cols=83 Identities=13% Similarity=0.053 Sum_probs=47.7
Q ss_pred CCcceEEEEeCCC-CeEEEeecCCCCcceEEEccCCCEEEEEecCCcEEEEEEccCCCCCceeEEEeCCCCCCceEEcCC
Q 024436 87 DKTGRLMKYDPAT-KQVTVLLGNLSFPNGVALSEDGNYILLAETTSCRILRYWLKTSKAGTIEIVAQLPGFPDNIKRSPR 165 (268)
Q Consensus 87 ~~~g~v~~~d~~~-~~~~~~~~~~~~pnGia~spdg~~lyva~~~~~~I~~~~~~~~~~g~~~~~~~l~g~Pdgia~d~d 165 (268)
.-.+.|+.+++.. .....+..+-..+-.|.++.||+++ ++-+.+..+..|+++.........|.. ++.+..+++++.
T Consensus 152 sv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i-~s~SdDRsiRlW~i~s~~~~~~~~fgH-saRvw~~~~~~n 229 (967)
T KOG0974|consen 152 SVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYI-ASVSDDRSIRLWPIDSREVLGCTGFGH-SARVWACCFLPN 229 (967)
T ss_pred cccccEEEEeccccCCcceecccCCceEEEEEccCCcEE-EEEecCcceeeeecccccccCcccccc-cceeEEEEeccc
Confidence 3445666665541 1122345555567789999999755 566778888889988532211112211 345667777766
Q ss_pred CCEEEEE
Q 024436 166 GGFWVGI 172 (268)
Q Consensus 166 G~l~va~ 172 (268)
.++.+.
T Consensus 230 -~i~t~g 235 (967)
T KOG0974|consen 230 -RIITVG 235 (967)
T ss_pred -eeEEec
Confidence 444433
No 412
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=20.15 E-value=9.2e+02 Score=24.48 Aligned_cols=19 Identities=11% Similarity=0.193 Sum_probs=12.6
Q ss_pred EEEeCCEEEEeeCCCCeEE
Q 024436 244 VEEKDGNLWIGSVNMPYAG 262 (268)
Q Consensus 244 ~~~~~g~Lyv~s~~~~~v~ 262 (268)
+...++.+|++++.-++..
T Consensus 324 A~AvdsfiyfanIRP~ykW 342 (1189)
T KOG2041|consen 324 AIAVDSFIYFANIRPEYKW 342 (1189)
T ss_pred EEEecceEEEEeecccceE
Confidence 3445677788877777654
Done!