BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024438
(267 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1CCZ|A Chain A, Crystal Structure Of The Cd2-Binding Domain Of Cd58
(Lymphocyte Function-Associated Antigen 3) At 1.8-A
Resolution
Length = 171
Score = 30.8 bits (68), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 50/113 (44%), Gaps = 20/113 (17%)
Query: 97 NGSLPSTSLNSSG-DSYATSQPLVNNVTQSIPTQSKVIQPV-------RCVVCNIDCN-- 146
+GSL +L SS D Y P N+T ++ V++ V C + C
Sbjct: 59 SGSLTIYNLTSSDEDEYEMESP---NITDTMKFFLYVLEMVSKPMIYWECSNATLTCEVL 115
Query: 147 -SKDVFQKHISGKKHLRNLQNQHNPSAATLKRS---CNTINKVSLPSQELEMK 195
DV K GK+HLR+L+ + T R+ C +N+V SQE EM+
Sbjct: 116 EGTDVELKLYQGKEHLRSLRQKTMSYQWTNLRAPFKCKAVNRV---SQESEME 165
>pdb|2EX4|A Chain A, Crystal Structure Of Human Methyltransferase Ad-003 In
Complex With S-adenosyl-l-homocysteine
pdb|2EX4|B Chain B, Crystal Structure Of Human Methyltransferase Ad-003 In
Complex With S-adenosyl-l-homocysteine
Length = 241
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/106 (20%), Positives = 42/106 (39%), Gaps = 17/106 (16%)
Query: 50 IDPDADSGSHPSTHVGIENQIPTQYYV--------DPNAVSVAWVTWQAGSLTYE----- 96
+D D T++G E + Y+ +P++ V W+ W G LT +
Sbjct: 108 VDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEF 167
Query: 97 ----NGSLPSTSLNSSGDSYATSQPLVNNVTQSIPTQSKVIQPVRC 138
GSL + D+ A ++++V S+ V++ + C
Sbjct: 168 LRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIIC 213
>pdb|2LP4|A Chain A, Solution Structure Of P1-CheyP2 COMPLEX IN BACTERIAL
CHEMOTAXIS
Length = 225
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/51 (23%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Query: 140 VCNIDCNSKDVFQKHISGKKHLRNLQNQHNPSAATLKRSCNTINKVSLPSQ 190
+ N+ +KD+ Q+ + K N P AA+ + CN + +++L ++
Sbjct: 87 IINLFLETKDIMQEQLDAYK------NSEEPDAASFEYICNALRQLALEAK 131
>pdb|1S5W|A Chain A, Crystal Structure Analysis Of A Mutant Of
Dihydrodipicolinate Synthase--Residue Tyr133 To Phe133
pdb|1S5W|B Chain B, Crystal Structure Analysis Of A Mutant Of
Dihydrodipicolinate Synthase--Residue Tyr133 To Phe133
Length = 292
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 73 QYYVDPNAVSVAWVTWQAGSLTYENGSLPSTSLNSSG 109
+ +V+PN + V W + G + + LP T + SG
Sbjct: 242 KLFVEPNPIPVKWACKELGLVATDTLRLPMTPITDSG 278
>pdb|1S5V|A Chain A, Crystal Structure Analysis Of A Mutant Of
Dihydrodipicolinate Synthase--Residue Tyr107 To Phe107
pdb|1S5V|B Chain B, Crystal Structure Analysis Of A Mutant Of
Dihydrodipicolinate Synthase--Residue Tyr107 To Phe107
Length = 292
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 73 QYYVDPNAVSVAWVTWQAGSLTYENGSLPSTSLNSSG 109
+ +V+PN + V W + G + + LP T + SG
Sbjct: 242 KLFVEPNPIPVKWACKELGLVATDTLRLPMTPITDSG 278
>pdb|2A6L|A Chain A, Dihydrodipicolinate Synthase (E. Coli)- Mutant R138h
pdb|2A6L|B Chain B, Dihydrodipicolinate Synthase (E. Coli)- Mutant R138h
Length = 292
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 73 QYYVDPNAVSVAWVTWQAGSLTYENGSLPSTSLNSSG 109
+ +V+PN + V W + G + + LP T + SG
Sbjct: 242 KLFVEPNPIPVKWACKELGLVATDTLRLPMTPITDSG 278
>pdb|1S5T|A Chain A, Crystal Structure Analysis Of A Mutant Of
Dihydrodipicolinate Synthase--Residue Thr44 To Val44
pdb|1S5T|B Chain B, Crystal Structure Analysis Of A Mutant Of
Dihydrodipicolinate Synthase--Residue Thr44 To Val44
Length = 292
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 73 QYYVDPNAVSVAWVTWQAGSLTYENGSLPSTSLNSSG 109
+ +V+PN + V W + G + + LP T + SG
Sbjct: 242 KLFVEPNPIPVKWACKELGLVATDTLRLPMTPITDSG 278
>pdb|3C0J|A Chain A, Structure Of E. Coli Dihydrodipicolinate Synthase
Complexed With Hydroxypyruvate
pdb|3C0J|B Chain B, Structure Of E. Coli Dihydrodipicolinate Synthase
Complexed With Hydroxypyruvate
pdb|3DU0|A Chain A, E. Coli Dihydrodipicolinate Synthase With First Substrate,
Pyruvate, Bound In Active Site
pdb|3DU0|B Chain B, E. Coli Dihydrodipicolinate Synthase With First Substrate,
Pyruvate, Bound In Active Site
pdb|4EOU|A Chain A, Crystal Structure Of E. Coli Dihydrodipicolinate Synthase
With Pyruvate And Succinic Semi-Aldehyde Bound In Active
Site
pdb|4EOU|B Chain B, Crystal Structure Of E. Coli Dihydrodipicolinate Synthase
With Pyruvate And Succinic Semi-Aldehyde Bound In Active
Site
Length = 292
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 73 QYYVDPNAVSVAWVTWQAGSLTYENGSLPSTSLNSSG 109
+ +V+PN + V W + G + + LP T + SG
Sbjct: 242 KLFVEPNPIPVKWACKELGLVATDTLRLPMTPITDSG 278
>pdb|1DHP|A Chain A, Dihydrodipicolinate Synthase
pdb|1DHP|B Chain B, Dihydrodipicolinate Synthase
pdb|1YXC|A Chain A, Structure Of E. Coli Dihydrodipicolinate Synthase To 1.9 A
pdb|1YXC|B Chain B, Structure Of E. Coli Dihydrodipicolinate Synthase To 1.9 A
pdb|1YXD|A Chain A, Structure Of E. Coli Dihydrodipicolinate Synthase Bound
With Allosteric Inhibitor (S)-Lysine To 2.0 A
pdb|1YXD|B Chain B, Structure Of E. Coli Dihydrodipicolinate Synthase Bound
With Allosteric Inhibitor (S)-Lysine To 2.0 A
pdb|2ATS|A Chain A, Dihydrodipicolinate Synthase Co-Crystallised With
(S)-Lysine
pdb|2ATS|B Chain B, Dihydrodipicolinate Synthase Co-Crystallised With
(S)-Lysine
Length = 292
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 73 QYYVDPNAVSVAWVTWQAGSLTYENGSLPSTSLNSSG 109
+ +V+PN + V W + G + + LP T + SG
Sbjct: 242 KLFVEPNPIPVKWACKELGLVATDTLRLPMTPITDSG 278
>pdb|2A6N|A Chain A, Dihydrodipicolinate Synthase (E. Coli)- Mutant R138a
pdb|2A6N|B Chain B, Dihydrodipicolinate Synthase (E. Coli)- Mutant R138a
Length = 292
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 73 QYYVDPNAVSVAWVTWQAGSLTYENGSLPSTSLNSSG 109
+ +V+PN + V W + G + + LP T + SG
Sbjct: 242 KLFVEPNPIPVKWACKELGLVATDTLRLPMTPITDSG 278
>pdb|3I7Q|A Chain A, Dihydrodipicolinate Synthase Mutant - K161a
pdb|3I7Q|B Chain B, Dihydrodipicolinate Synthase Mutant - K161a
pdb|3I7R|A Chain A, Dihydrodipicolinate Synthase - K161r
pdb|3I7R|B Chain B, Dihydrodipicolinate Synthase - K161r
pdb|3I7S|A Chain A, Dihydrodipicolinate Synthase Mutant - K161a - With The
Substrate Pyruvate Bound In The Active Site.
pdb|3I7S|B Chain B, Dihydrodipicolinate Synthase Mutant - K161a - With The
Substrate Pyruvate Bound In The Active Site
Length = 292
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 73 QYYVDPNAVSVAWVTWQAGSLTYENGSLPSTSLNSSG 109
+ +V+PN + V W + G + + LP T + SG
Sbjct: 242 KLFVEPNPIPVKWACKELGLVATDTLRLPMTPITDSG 278
>pdb|2PUR|A Chain A, Structure Of Dihydrodipicolinate Synthase Mutant Thr44ser
At 1.7 A.
pdb|2PUR|B Chain B, Structure Of Dihydrodipicolinate Synthase Mutant Thr44ser
At 1.7 A
Length = 292
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 73 QYYVDPNAVSVAWVTWQAGSLTYENGSLPSTSLNSSG 109
+ +V+PN + V W + G + + LP T + SG
Sbjct: 242 KLFVEPNPIPVKWACKELGLVATDTLRLPMTPITDSG 278
>pdb|3DEN|A Chain A, Structure Of E. Coli Dhdps Mutant Y107w
pdb|3DEN|B Chain B, Structure Of E. Coli Dhdps Mutant Y107w
Length = 292
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 73 QYYVDPNAVSVAWVTWQAGSLTYENGSLPSTSLNSSG 109
+ +V+PN + V W + G + + LP T + SG
Sbjct: 242 KLFVEPNPIPVKWACKELGLVATDTLRLPMTPITDSG 278
>pdb|2OJP|A Chain A, The Crystal Structure Of A Dimeric Mutant Of
Dihydrodipicolinate Synthase From E.Coli- Dhdps-L197y
pdb|2OJP|B Chain B, The Crystal Structure Of A Dimeric Mutant Of
Dihydrodipicolinate Synthase From E.Coli- Dhdps-L197y
Length = 292
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 73 QYYVDPNAVSVAWVTWQAGSLTYENGSLPSTSLNSSG 109
+ +V+PN + V W + G + + LP T + SG
Sbjct: 242 KLFVEPNPIPVKWACKELGLVATDTLRLPMTPITDSG 278
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.129 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,754,238
Number of Sequences: 62578
Number of extensions: 304103
Number of successful extensions: 588
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 574
Number of HSP's gapped (non-prelim): 18
length of query: 267
length of database: 14,973,337
effective HSP length: 97
effective length of query: 170
effective length of database: 8,903,271
effective search space: 1513556070
effective search space used: 1513556070
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)