BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024439
(267 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 185 bits (470), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 111/265 (41%), Positives = 156/265 (58%), Gaps = 27/265 (10%)
Query: 1 MAYGQTGTGKTYTLGRLGKDDASERGIMVRALEDIISSMSVTSDSVE----VSYLQLYME 56
AYGQTG GK+YT+ DD RG++ R +E I +S+ ++ ++E VSY+++YME
Sbjct: 85 FAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYME 144
Query: 57 SIQDLLAPEKVNIPINEDPKTGEVSLPGATVVKXXXXXXXXXXXXVGEVNRHAANTKLNT 116
I+DLLAP+ N+P++E+ G V + G + G R A T +N
Sbjct: 145 RIRDLLAPQNDNLPVHEEKNRG-VYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQ 203
Query: 117 ESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELPGDNHVPLVRKSKLLIVDLAGSERI 176
ESSRSH+I V+ IT + +T + G +L +VDLAGSE++
Sbjct: 204 ESSRSHSIFVI-----------TITQKNVETGSAKSG----------QLFLVDLAGSEKV 242
Query: 177 DKSGSEGPLLEEAKFINLSLSSLGKCINALAE-NSPHIPTRDSKLTRLLRDSFGGSARTS 235
K+G+ G LEEAK IN SLS+LG INAL + S H+P RDSKLTR+L++S GG++RT+
Sbjct: 243 GKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNSRTT 302
Query: 236 LIITVGPSARNHAETTSTIMFGQRG 260
LII PS+ N AET ST+ FG R
Sbjct: 303 LIINCSPSSYNDAETLSTLRFGMRA 327
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 181 bits (460), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 106/265 (40%), Positives = 158/265 (59%), Gaps = 29/265 (10%)
Query: 1 MAYGQTGTGKTYTL-GRLGKDDASERGIMVRALEDIISSMSVTSDSVE----VSYLQLYM 55
AYGQT +GKT+T+ G+L D GI+ R ++DI + + +++E VSY ++Y+
Sbjct: 82 FAYGQTSSGKTHTMEGKL--HDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYL 139
Query: 56 ESIQDLLAPEKVNIPINEDPKTGEVSLPGATVVKXXXXXXXXXXXXVGEVNRHAANTKLN 115
+ I+DLL K N+ ++ED K + G T G+ NRH A T +N
Sbjct: 140 DKIRDLLDVSKTNLSVHED-KNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMN 198
Query: 116 TESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELPGDNHVPLVRKSKLLIVDLAGSER 175
SSRSH+I ++ +++ E T +L G KL +VDLAGSE+
Sbjct: 199 EHSSRSHSIFLINVKQ-----------ENTQTEQKLSG----------KLYLVDLAGSEK 237
Query: 176 IDKSGSEGPLLEEAKFINLSLSSLGKCINALAENSPHIPTRDSKLTRLLRDSFGGSARTS 235
+ K+G+EG +L+EAK IN SLS+LG I+ALAE S ++P RDSK+TR+L+DS GG+ RT+
Sbjct: 238 VSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTT 297
Query: 236 LIITVGPSARNHAETTSTIMFGQRG 260
++I PS+ N +ET ST++FGQR
Sbjct: 298 IVICCSPSSYNESETKSTLLFGQRA 322
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 181 bits (459), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 106/265 (40%), Positives = 158/265 (59%), Gaps = 29/265 (10%)
Query: 1 MAYGQTGTGKTYTL-GRLGKDDASERGIMVRALEDIISSMSVTSDSVE----VSYLQLYM 55
AYGQT +GKT+T+ G+L D GI+ R ++DI + + +++E VSY ++Y+
Sbjct: 82 FAYGQTSSGKTHTMEGKL--HDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYL 139
Query: 56 ESIQDLLAPEKVNIPINEDPKTGEVSLPGATVVKXXXXXXXXXXXXVGEVNRHAANTKLN 115
+ I+DLL K N+ ++ED K + G T G+ NRH A T +N
Sbjct: 140 DKIRDLLDVSKTNLSVHED-KNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMN 198
Query: 116 TESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELPGDNHVPLVRKSKLLIVDLAGSER 175
SSRSH+I ++ +++ E T +L G KL +VDLAGSE+
Sbjct: 199 EHSSRSHSIFLINVKQ-----------ENTQTEQKLSG----------KLYLVDLAGSEK 237
Query: 176 IDKSGSEGPLLEEAKFINLSLSSLGKCINALAENSPHIPTRDSKLTRLLRDSFGGSARTS 235
+ K+G+EG +L+EAK IN SLS+LG I+ALAE S ++P RDSK+TR+L+DS GG+ RT+
Sbjct: 238 VSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTT 297
Query: 236 LIITVGPSARNHAETTSTIMFGQRG 260
++I PS+ N +ET ST++FGQR
Sbjct: 298 IVICCSPSSYNESETKSTLLFGQRA 322
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 180 bits (456), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 105/265 (39%), Positives = 157/265 (59%), Gaps = 29/265 (10%)
Query: 1 MAYGQTGTGKTYTL-GRLGKDDASERGIMVRALEDIISSMSVTSDSVE----VSYLQLYM 55
AYGQT +GK +T+ G+L D GI+ R ++DI + + +++E VSY ++Y+
Sbjct: 82 FAYGQTSSGKNHTMEGKL--HDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYL 139
Query: 56 ESIQDLLAPEKVNIPINEDPKTGEVSLPGATVVKXXXXXXXXXXXXVGEVNRHAANTKLN 115
+ I+DLL K N+ ++ED K + G T G+ NRH A T +N
Sbjct: 140 DKIRDLLDVSKTNLSVHED-KNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMN 198
Query: 116 TESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELPGDNHVPLVRKSKLLIVDLAGSER 175
SSRSH+I ++ +++ E T +L G KL +VDLAGSE+
Sbjct: 199 EHSSRSHSIFLINVKQ-----------ENTQTEQKLSG----------KLYLVDLAGSEK 237
Query: 176 IDKSGSEGPLLEEAKFINLSLSSLGKCINALAENSPHIPTRDSKLTRLLRDSFGGSARTS 235
+ K+G+EG +L+EAK IN SLS+LG I+ALAE S ++P RDSK+TR+L+DS GG+ RT+
Sbjct: 238 VSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTT 297
Query: 236 LIITVGPSARNHAETTSTIMFGQRG 260
++I PS+ N +ET ST++FGQR
Sbjct: 298 IVICCSPSSYNESETKSTLLFGQRA 322
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 177 bits (449), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 111/273 (40%), Positives = 167/273 (61%), Gaps = 30/273 (10%)
Query: 1 MAYGQTGTGKTYTL-GRLGKDDASERGIMVRALEDI---ISSMSVTSD-SVEVSYLQLYM 55
AYGQT +GKT+T+ G +G D+ ++GI+ R + DI I +M V + ++VSY ++YM
Sbjct: 89 FAYGQTSSGKTHTMEGVIG--DSVKQGIIPRIVNDIFNHIYAMEVNLEFHIKVSYYEIYM 146
Query: 56 ESIQDLLAPEKVNIPINEDPKTGEVSLPGATVVKXXXXXXXXXXXXVGEVNRHAANTKLN 115
+ I+DLL KVN+ ++ED K + GAT G+ NRH A T +N
Sbjct: 147 DKIRDLLDVSKVNLSVHED-KNRVPYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMN 205
Query: 116 TESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELPGDNHVPLVRKSKLLIVDLAGSER 175
SSRSH++ ++ +++ E + + +L G KL +VDLAGSE+
Sbjct: 206 EHSSRSHSVFLINVKQ-----------ENLENQKKLSG----------KLYLVDLAGSEK 244
Query: 176 IDKSGSEGPLLEEAKFINLSLSSLGKCINALAE-NSPHIPTRDSKLTRLLRDSFGGSART 234
+ K+G+EG +L+EAK IN SLS+LG I+ALA+ N HIP RDSKLTR+L++S GG+ART
Sbjct: 245 VSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNART 304
Query: 235 SLIITVGPSARNHAETTSTIMFGQRGSIRISVV 267
+++I P++ N +ET ST+ FG+R +VV
Sbjct: 305 TIVICCSPASFNESETKSTLDFGRRAKTVKNVV 337
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 169 bits (427), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 107/265 (40%), Positives = 151/265 (56%), Gaps = 25/265 (9%)
Query: 1 MAYGQTGTGKTYTLGRLGKDDASERGIMVRALEDIISSMSVTSDS---VEVSYLQLYMES 57
AYGQTGTGKTYT+ + + D +RG++ + + I + +S + + V SYL++Y E
Sbjct: 106 FAYGQTGTGKTYTMEGI-RGDPEKRGVIPNSFDHIFTHISRSQNQQYLVRASYLEIYQEE 164
Query: 58 IQDLLAPEKVN-IPINEDPKTGEVSLPGATVVKXXXXXXXXXXXXVGEVNRHAANTKLNT 116
I+DLL+ ++ + + E P TG V + + VG NR T +N
Sbjct: 165 IRDLLSKDQTKRLELKERPDTG-VYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNE 223
Query: 117 ESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELPGDNHVPLVRKSKLLIVDLAGSERI 176
SSRSHAI V+ I S L G+NH+ R KL +VDLAGSER
Sbjct: 224 HSSRSHAIFVITIECS---------------EVGLDGENHI---RVGKLNLVDLAGSERQ 265
Query: 177 DKSGSEGPLLEEAKFINLSLSSLGKCINALAE-NSPHIPTRDSKLTRLLRDSFGGSARTS 235
K+G++G L+EA INLSLS+LG I+AL + S HIP RDSKLTRLL+DS GG+A+T
Sbjct: 266 AKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNAKTV 325
Query: 236 LIITVGPSARNHAETTSTIMFGQRG 260
++ VGP++ N ET +T+ + R
Sbjct: 326 MVANVGPASYNVEETLTTLRYANRA 350
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 155 bits (392), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 103/261 (39%), Positives = 147/261 (56%), Gaps = 23/261 (8%)
Query: 1 MAYGQTGTGKTYTLGRLGKDDASERGIMVRALEDIISSMSVTSDSVEV-SYLQLYMESIQ 59
AYGQTG GKT+T+G K++ + L D I+S S + + + SYL+LY E I+
Sbjct: 94 FAYGQTGAGKTWTMGG-NKEEPGAIPNSFKHLFDAINSSSSNQNFLVIGSYLELYNEEIR 152
Query: 60 DLLAPEKVNIPINEDPKTGEVSLPGATVVKXXXXXXXXXXXXVGEVNRHAANTKLNTESS 119
DL+ +P+ ED KT + + G ++ + G NRH A T++N SS
Sbjct: 153 DLIK-NNTKLPLKED-KTRGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSS 210
Query: 120 RSHAILVVYIRRSVHEIIDKITSEEKDTRTELPGDNHVPLVRKSKLLIVDLAGSERIDKS 179
RSH+I +V I S E+I E K+ ++R KL +VDLAGSER K+
Sbjct: 211 RSHSIFMVRIECS--EVI-----ENKE------------VIRVGKLNLVDLAGSERQSKT 251
Query: 180 GSEGPLLEEAKFINLSLSSLGKCINALAENSPHIPTRDSKLTRLLRDSFGGSARTSLIIT 239
G+ G L E INLSLS+LG I+ L E + HIP RDSKLTRLL+DS GG+++T +
Sbjct: 252 GATGETLVEGAKINLSLSALGLVISKLVEGATHIPYRDSKLTRLLQDSLGGNSKTLMCAN 311
Query: 240 VGPSARNHAETTSTIMFGQRG 260
+ P++ N+ ET ST+ + R
Sbjct: 312 ISPASTNYDETMSTLRYADRA 332
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 150 bits (380), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 101/285 (35%), Positives = 155/285 (54%), Gaps = 39/285 (13%)
Query: 1 MAYGQTGTGKTYTLGRLGKDDASERGIMVRALEDIISSMSVTSD-----SVEVSYLQLYM 55
AYGQTG GK+YT+ +GK + ++GI+ + ED+ S ++ T++ SVEVSY+++Y
Sbjct: 110 FAYGQTGAGKSYTM--MGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYC 167
Query: 56 ESIQDLLAPE-KVNIPINEDPKTGEVSLPGATVVKXXXXXXXXXXXXVGEVNRHAANTKL 114
E ++DLL P+ K N+ + E P G + + + G R A T +
Sbjct: 168 ERVRDLLNPKNKGNLRVREHPLLGPY-VEDLSKLAVTSYNDIQDLMDSGNKARTVAATNM 226
Query: 115 NTESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELPGDNHVPLVRKSKLLIVDLAGSE 174
N SSRSHA+ + + H+ IT+E + SK+ +VDLAGSE
Sbjct: 227 NETSSRSHAVFNIIFTQKRHDAETNITTE-----------------KVSKISLVDLAGSE 269
Query: 175 RIDKSGSEGPLLEEAKFINLSLSSLGKCINALAE------------NSPHIPTRDSKLTR 222
R D +G++G L+E IN SL++LGK I+ALAE + IP RDS LT
Sbjct: 270 RADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTW 329
Query: 223 LLRDSFGGSARTSLIITVGPSARNHAETTSTIMFGQRG-SIRISV 266
LLR++ GG++RT+++ + P+ N+ ET ST+ + R IR +V
Sbjct: 330 LLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTV 374
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 150 bits (380), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 98/278 (35%), Positives = 151/278 (54%), Gaps = 38/278 (13%)
Query: 1 MAYGQTGTGKTYTLGRLGKDDASERGIMVRALEDIISSMSVTSD-----SVEVSYLQLYM 55
AYGQTG GK+YT+ +GK + ++GI+ + ED+ S ++ T++ SVEVSY+++Y
Sbjct: 94 FAYGQTGAGKSYTM--MGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYC 151
Query: 56 ESIQDLLAPE-KVNIPINEDPKTGEVSLPGATVVKXXXXXXXXXXXXVGEVNRHAANTKL 114
E ++DLL P+ K N+ + E P G + + + G R A T +
Sbjct: 152 ERVRDLLNPKNKGNLRVREHPLLGPY-VEDLSKLAVTSYNDIQDLMDSGNKARTVAATNM 210
Query: 115 NTESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELPGDNHVPLVRKSKLLIVDLAGSE 174
N SSRSHA+ + + H+ IT+E + SK+ +VDLAGSE
Sbjct: 211 NETSSRSHAVFNIIFTQKRHDAETNITTE-----------------KVSKISLVDLAGSE 253
Query: 175 RIDKSGSEGPLLEEAKFINLSLSSLGKCINALAE------------NSPHIPTRDSKLTR 222
R D +G++G L+E IN SL++LGK I+ALAE + IP RDS LT
Sbjct: 254 RADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTW 313
Query: 223 LLRDSFGGSARTSLIITVGPSARNHAETTSTIMFGQRG 260
LLR++ GG++RT+++ + P+ N+ ET ST+ + R
Sbjct: 314 LLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRA 351
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 150 bits (380), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 101/285 (35%), Positives = 155/285 (54%), Gaps = 39/285 (13%)
Query: 1 MAYGQTGTGKTYTLGRLGKDDASERGIMVRALEDIISSMSVTSD-----SVEVSYLQLYM 55
AYGQTG GK+YT+ +GK + ++GI+ + ED+ S ++ T++ SVEVSY+++Y
Sbjct: 94 FAYGQTGAGKSYTM--MGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYC 151
Query: 56 ESIQDLLAPE-KVNIPINEDPKTGEVSLPGATVVKXXXXXXXXXXXXVGEVNRHAANTKL 114
E ++DLL P+ K N+ + E P G + + + G R A T +
Sbjct: 152 ERVRDLLNPKNKGNLRVREHPLLGPY-VEDLSKLAVTSYNDIQDLMDSGNKARTVAATNM 210
Query: 115 NTESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELPGDNHVPLVRKSKLLIVDLAGSE 174
N SSRSHA+ + + H+ IT+E + SK+ +VDLAGSE
Sbjct: 211 NETSSRSHAVFNIIFTQKRHDAETNITTE-----------------KVSKISLVDLAGSE 253
Query: 175 RIDKSGSEGPLLEEAKFINLSLSSLGKCINALAE------------NSPHIPTRDSKLTR 222
R D +G++G L+E IN SL++LGK I+ALAE + IP RDS LT
Sbjct: 254 RADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTW 313
Query: 223 LLRDSFGGSARTSLIITVGPSARNHAETTSTIMFGQRG-SIRISV 266
LLR++ GG++RT+++ + P+ N+ ET ST+ + R IR +V
Sbjct: 314 LLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTV 358
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 150 bits (379), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 101/285 (35%), Positives = 155/285 (54%), Gaps = 39/285 (13%)
Query: 1 MAYGQTGTGKTYTLGRLGKDDASERGIMVRALEDIISSMSVTSD-----SVEVSYLQLYM 55
AYGQTG GK+YT+ +GK + ++GI+ + ED+ S ++ T++ SVEVSY+++Y
Sbjct: 94 FAYGQTGAGKSYTM--MGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYC 151
Query: 56 ESIQDLLAPE-KVNIPINEDPKTGEVSLPGATVVKXXXXXXXXXXXXVGEVNRHAANTKL 114
E ++DLL P+ K N+ + E P G + + + G R A T +
Sbjct: 152 ERVRDLLNPKNKGNLRVREHPLLGPY-VEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNM 210
Query: 115 NTESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELPGDNHVPLVRKSKLLIVDLAGSE 174
N SSRSHA+ + + H+ IT+E + SK+ +VDLAGSE
Sbjct: 211 NETSSRSHAVFNIIFTQKRHDAETNITTE-----------------KVSKISLVDLAGSE 253
Query: 175 RIDKSGSEGPLLEEAKFINLSLSSLGKCINALAE------------NSPHIPTRDSKLTR 222
R D +G++G L+E IN SL++LGK I+ALAE + IP RDS LT
Sbjct: 254 RADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTW 313
Query: 223 LLRDSFGGSARTSLIITVGPSARNHAETTSTIMFGQRG-SIRISV 266
LLR++ GG++RT+++ + P+ N+ ET ST+ + R IR +V
Sbjct: 314 LLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTV 358
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 145 bits (367), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 99/266 (37%), Positives = 137/266 (51%), Gaps = 33/266 (12%)
Query: 1 MAYGQTGTGKTYTLGRLGKDDASERGIMVRALEDIISSMSVTSDSVE----VSYLQLYME 56
AYGQTG GKTYT+ + A GI RAL+ + S + + E VS ++Y E
Sbjct: 85 FAYGQTGAGKTYTM----EGTAENPGINQRALQLLFSEVQEKASDWEYTITVSAAEIYNE 140
Query: 57 SIQDLLAPE---KVNIPINEDPKTGEVSLPGATVVKXXXXXXXXXXXXVGEVNRHAANTK 113
++DLL E K+ I + D +G++ +PG T + G NR T
Sbjct: 141 VLRDLLGKEPQEKLEIRLCPD-GSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTN 199
Query: 114 LNTESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELPGDNHVPLVRKSKLLIVDLAGS 173
LN SSRSHA+L+V +R D L KL +VDLAGS
Sbjct: 200 LNEHSSRSHALLIVTVRGV---------------------DCSTGLRTTGKLNLVDLAGS 238
Query: 174 ERIDKSGSEGPLLEEAKFINLSLSSLGKCINALAENSPHIPTRDSKLTRLLRDSFGGSAR 233
ER+ KSG+EG L EA+ IN SLS+LG I AL H+P R+SKLT LL+DS G ++
Sbjct: 239 ERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGDSK 298
Query: 234 TSLIITVGPSARNHAETTSTIMFGQR 259
T +++ V P +N +ET ++ F +R
Sbjct: 299 TLMVVQVSPVEKNTSETLYSLKFAER 324
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 142 bits (357), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 96/266 (36%), Positives = 144/266 (54%), Gaps = 33/266 (12%)
Query: 1 MAYGQTGTGKTYTLGRLGKDDASERGIMVRALEDIISSMSVTSD----SVEVSYLQLYME 56
AYGQTG+GKT+T+ G D S G+ RA+ ++ M S+ S++ ++LY +
Sbjct: 84 FAYGQTGSGKTFTI--YGAD--SNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQD 139
Query: 57 SIQDLLAPE---KVNIPINEDPKTGEVSLPGATVVKXXXXXXXXXXXXVGEVNRHAANTK 113
++ DLL P+ ++ + I +D K G VS+ TVV G RH T
Sbjct: 140 TLVDLLLPKQAKRLKLDIKKDSK-GMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTL 198
Query: 114 LNTESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELPGDNHVPLVRKSKLLIVDLAGS 173
+N +SSRSH I+ V I E + +T+ + + KL VDLAGS
Sbjct: 199 MNEQSSRSHLIVSVII-------------ESTNLQTQA--------IARGKLSFVDLAGS 237
Query: 174 ERIDKSGSEGPLLEEAKFINLSLSSLGKCINALAENSPHIPTRDSKLTRLLRDSFGGSAR 233
ER+ KSGS G L+EA+ IN SLS+LG I+AL+ + HIP R+ KLT L+ DS GG+A+
Sbjct: 238 ERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNHKLTMLMSDSLGGNAK 297
Query: 234 TSLIITVGPSARNHAETTSTIMFGQR 259
T + + + P+ N ET +++ + R
Sbjct: 298 TLMFVNISPAESNLDETHNSLTYASR 323
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 141 bits (356), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 106/291 (36%), Positives = 151/291 (51%), Gaps = 53/291 (18%)
Query: 1 MAYGQTGTGKTYTLGRLGKDDASERGIMVRALEDIISSMSVTSDS---VEVSYLQLYMES 57
AYGQTGTGKTYT+ + RG++ A E I + +S + + V SYL++Y E
Sbjct: 106 FAYGQTGTGKTYTMQGTWVE-PELRGVIPNAFEHIFTHISRSQNQQYLVRASYLEIYQEE 164
Query: 58 IQDLLAPEK-VNIPINEDPKTGEVSLPGATVVKXXXXXXXXXXXXVGEVNRHAANTKLNT 116
I+DLL+ E + + E+P+TG V + + +G R +T +N
Sbjct: 165 IRDLLSKEPGKRLELKENPETG-VYIKDLSSFVTKNVKEIEHVMNLGNQTRAVGSTHMNE 223
Query: 117 ESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELPGDNHVPLVRKSKLLIVDLAGSERI 176
SSRSHAI ++ + S E+ + G +H+ R KL +VDLAGSER
Sbjct: 224 VSSRSHAIFIITVECS-----------ERGS----DGQDHI---RVGKLNLVDLAGSERQ 265
Query: 177 DKSG--------------------------SEGPLLEEAKFINLSLSSLGKCINALAEN- 209
+K+G E P +EA INLSLS+LG I ALA N
Sbjct: 266 NKAGPNTAGGAATPSSGGGGGGGGSGGGAGGERP--KEASKINLSLSALGNVIAALAGNR 323
Query: 210 SPHIPTRDSKLTRLLRDSFGGSARTSLIITVGPSARNHAETTSTIMFGQRG 260
S HIP RDSKLTRLL+DS GG+A+T ++ T+GP++ ++ E+ ST+ F R
Sbjct: 324 STHIPYRDSKLTRLLQDSLGGNAKTIMVATLGPASHSYDESLSTLRFANRA 374
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 140 bits (353), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 97/267 (36%), Positives = 141/267 (52%), Gaps = 34/267 (12%)
Query: 1 MAYGQTGTGKTYTLGRLGKDDASERGIMVRALEDII-------SSMSVTSDSVEVSYLQL 53
+AYG TG GKT+T+ LG + + G++ RAL D++ + + SV +SYL++
Sbjct: 103 LAYGPTGAGKTHTM--LGSPE--QPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEI 158
Query: 54 YMESIQDLLAPEKVNIPINEDPKTGEVSLPGATVVKXXXXXXXXXXXXVGEVNRHAANTK 113
Y E + DLL P ++ I ED + G + +PG + NR T+
Sbjct: 159 YQEKVLDLLDPASGDLVIREDCR-GNILIPGLSQKPISSFADFERHFLPASRNRTVGATR 217
Query: 114 LNTESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELPGDNHVPL-VRKSKLLIVDLAG 172
LN SSRSHA+L+V + D R L P R+ KL ++DLAG
Sbjct: 218 LNQRSSRSHAVLLVKV----------------DQRERL-----APFRQREGKLYLIDLAG 256
Query: 173 SERIDKSGSEGPLLEEAKFINLSLSSLGKCINALAENSPHIPTRDSKLTRLLRDSFGGSA 232
SE ++G++G L+E+ IN SL LGK ++AL + P +P RDSKLTRLL+DS GGSA
Sbjct: 257 SEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGLPRVPYRDSKLTRLLQDSLGGSA 316
Query: 233 RTSLIITVGPSARNHAETTSTIMFGQR 259
+ LI + P R + +T S + F R
Sbjct: 317 HSILIANIAPERRFYLDTVSALNFAAR 343
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 140 bits (352), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 102/270 (37%), Positives = 139/270 (51%), Gaps = 34/270 (12%)
Query: 1 MAYGQTGTGKTYTLGRLGK-DDASERGIMVRALEDI---ISSMSVTSDSVEVSYLQLYME 56
M YGQTG GKTYT+ +G ++ RGI+ RAL+ + I + +V VSYL++Y E
Sbjct: 109 MCYGQTGAGKTYTM--MGATENYKHRGILPRALQQVFRMIEERPTHAITVRVSYLEIYNE 166
Query: 57 SIQDLLA------PEKVNIPINEDPKTGEVSLPGATVVKXXXXXXXXXXXXVGEVNRHAA 110
S+ DLL+ P + I E+P+ V + G +V GE NR A
Sbjct: 167 SLFDLLSTLPYVGPSVTPMTIVENPQG--VFIKGLSVHLTSQEEDAFSLLFEGETNRIIA 224
Query: 111 NTKLNTESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELPGDNHVPLVRKSKLLIVDL 170
+ +N SSRSH I +Y+ E + SEEK SK+ +VDL
Sbjct: 225 SHTMNKNSSRSHCIFTIYL-----EAHSRTLSEEKYI--------------TSKINLVDL 265
Query: 171 AGSERIDKSGSEGPLLEEAKFINLSLSSLGKCINALAENS-PHIPTRDSKLTRLLRDSFG 229
AGSER+ KSGSEG +L+EA +IN SLS L + I AL + HIP R KLT L+DS G
Sbjct: 266 AGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLG 325
Query: 230 GSARTSLIITVGPSARNHAETTSTIMFGQR 259
G+ L+ + A ET S++ F R
Sbjct: 326 GNCNMVLVTNIYGEAAQLEETLSSLRFASR 355
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 138 bits (348), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 101/275 (36%), Positives = 140/275 (50%), Gaps = 35/275 (12%)
Query: 1 MAYGQTGTGKTYTLGRLGKDDASER---------GIMVRALEDIISSMSV--TSDSVEVS 49
AYGQTGTGKT+T+ G+ +E GI+ R L I ++ T SV+VS
Sbjct: 93 FAYGQTGTGKTFTME--GERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTDNGTEFSVKVS 150
Query: 50 YLQLYMESIQDLLAPEK---VNIPINEDPKTGE-VSLPGATVVKXXXXXXXXXXXXVGEV 105
L++Y E + DLL P + + +DP+ V + G + G
Sbjct: 151 LLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAA 210
Query: 106 NRHAANTKLNTESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELPGDNHVPLVRKSKL 165
R A T +N SSRSH++ V ++H I EE LV+ KL
Sbjct: 211 KRTTAATLMNAYSSRSHSVFSV----TIHMKETTIDGEE--------------LVKIGKL 252
Query: 166 LIVDLAGSERIDKSGSEGPLLEEAKFINLSLSSLGKCINALAENSPHIPTRDSKLTRLLR 225
+VDLAGSE I +SG+ EA IN SL +LG+ I AL E +PH+P R+SKLTR+L+
Sbjct: 253 NLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKLTRILQ 312
Query: 226 DSFGGSARTSLIITVGPSARNHAETTSTIMFGQRG 260
DS GG RTS+I T+ P++ N ET ST+ + R
Sbjct: 313 DSLGGRTRTSIIATISPASLNLEETLSTLEYAHRA 347
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 138 bits (347), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 101/275 (36%), Positives = 140/275 (50%), Gaps = 35/275 (12%)
Query: 1 MAYGQTGTGKTYTLGRLGKDDASER---------GIMVRALEDIISSMSV--TSDSVEVS 49
AYGQTGTGKT+T+ G+ +E GI+ R L I ++ T SV+VS
Sbjct: 102 FAYGQTGTGKTFTME--GERSPNEEYCWEEDPLAGIIPRTLHQIFEKLTDNGTEFSVKVS 159
Query: 50 YLQLYMESIQDLLAPEK---VNIPINEDPKTGE-VSLPGATVVKXXXXXXXXXXXXVGEV 105
L++Y E + DLL P + + +DP+ V + G + G
Sbjct: 160 LLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAA 219
Query: 106 NRHAANTKLNTESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELPGDNHVPLVRKSKL 165
R A T +N SSRSH++ V ++H I EE LV+ KL
Sbjct: 220 KRTTAATLMNAYSSRSHSVFSV----TIHMKETTIDGEE--------------LVKIGKL 261
Query: 166 LIVDLAGSERIDKSGSEGPLLEEAKFINLSLSSLGKCINALAENSPHIPTRDSKLTRLLR 225
+VDLAGSE I +SG+ EA IN SL +LG+ I AL E +PH+P R+SKLTR+L+
Sbjct: 262 NLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKLTRILQ 321
Query: 226 DSFGGSARTSLIITVGPSARNHAETTSTIMFGQRG 260
DS GG RTS+I T+ P++ N ET ST+ + R
Sbjct: 322 DSLGGRTRTSIIATISPASLNLEETLSTLEYAHRA 356
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 138 bits (347), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 101/275 (36%), Positives = 140/275 (50%), Gaps = 35/275 (12%)
Query: 1 MAYGQTGTGKTYTLGRLGKDDASER---------GIMVRALEDIISSMSV--TSDSVEVS 49
AYGQTGTGKT+T+ G+ +E GI+ R L I ++ T SV+VS
Sbjct: 102 FAYGQTGTGKTFTME--GERSPNEEYTWEEVPLAGIIPRTLHQIFEKLTDNGTEFSVKVS 159
Query: 50 YLQLYMESIQDLLAPEK---VNIPINEDPKTGE-VSLPGATVVKXXXXXXXXXXXXVGEV 105
L++Y E + DLL P + + +DP+ V + G + G
Sbjct: 160 LLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAA 219
Query: 106 NRHAANTKLNTESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELPGDNHVPLVRKSKL 165
R A T +N SSRSH++ V ++H I EE LV+ KL
Sbjct: 220 KRTTAATLMNAYSSRSHSVFSV----TIHMKETTIDGEE--------------LVKIGKL 261
Query: 166 LIVDLAGSERIDKSGSEGPLLEEAKFINLSLSSLGKCINALAENSPHIPTRDSKLTRLLR 225
+VDLAGSE I +SG+ EA IN SL +LG+ I AL E +PH+P R+SKLTR+L+
Sbjct: 262 NLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKLTRILQ 321
Query: 226 DSFGGSARTSLIITVGPSARNHAETTSTIMFGQRG 260
DS GG RTS+I T+ P++ N ET ST+ + R
Sbjct: 322 DSLGGRTRTSIIATISPASLNLEETLSTLEYAHRA 356
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 138 bits (347), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 101/275 (36%), Positives = 140/275 (50%), Gaps = 35/275 (12%)
Query: 1 MAYGQTGTGKTYTLGRLGKDDASER---------GIMVRALEDIISSMSV--TSDSVEVS 49
AYGQTGTGKT+T+ G+ +E GI+ R L I ++ T SV+VS
Sbjct: 87 FAYGQTGTGKTFTME--GERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTDNGTEFSVKVS 144
Query: 50 YLQLYMESIQDLLAPEK---VNIPINEDPKTGE-VSLPGATVVKXXXXXXXXXXXXVGEV 105
L++Y E + DLL P + + +DP+ V + G + G
Sbjct: 145 LLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAA 204
Query: 106 NRHAANTKLNTESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELPGDNHVPLVRKSKL 165
R A T +N SSRSH++ V ++H I EE LV+ KL
Sbjct: 205 KRTTAATLMNAYSSRSHSVFSV----TIHMKETTIDGEE--------------LVKIGKL 246
Query: 166 LIVDLAGSERIDKSGSEGPLLEEAKFINLSLSSLGKCINALAENSPHIPTRDSKLTRLLR 225
+VDLAGSE I +SG+ EA IN SL +LG+ I AL E +PH+P R+SKLTR+L+
Sbjct: 247 NLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKLTRILQ 306
Query: 226 DSFGGSARTSLIITVGPSARNHAETTSTIMFGQRG 260
DS GG RTS+I T+ P++ N ET ST+ + R
Sbjct: 307 DSLGGRTRTSIIATISPASLNLEETLSTLEYAHRA 341
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 138 bits (347), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 101/275 (36%), Positives = 140/275 (50%), Gaps = 35/275 (12%)
Query: 1 MAYGQTGTGKTYTLGRLGKDDASER---------GIMVRALEDIISSMSV--TSDSVEVS 49
AYGQTGTGKT+T+ G+ +E GI+ R L I ++ T SV+VS
Sbjct: 102 FAYGQTGTGKTFTME--GERSPNEEYTWEEDPLDGIIPRTLHQIFEKLTDNGTEFSVKVS 159
Query: 50 YLQLYMESIQDLLAPEK---VNIPINEDPKTGE-VSLPGATVVKXXXXXXXXXXXXVGEV 105
L++Y E + DLL P + + +DP+ V + G + G
Sbjct: 160 LLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAA 219
Query: 106 NRHAANTKLNTESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELPGDNHVPLVRKSKL 165
R A T +N SSRSH++ V ++H I EE LV+ KL
Sbjct: 220 KRTTAATLMNAYSSRSHSVFSV----TIHMKETTIDGEE--------------LVKIGKL 261
Query: 166 LIVDLAGSERIDKSGSEGPLLEEAKFINLSLSSLGKCINALAENSPHIPTRDSKLTRLLR 225
+VDLAGSE I +SG+ EA IN SL +LG+ I AL E +PH+P R+SKLTR+L+
Sbjct: 262 NLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKLTRILQ 321
Query: 226 DSFGGSARTSLIITVGPSARNHAETTSTIMFGQRG 260
DS GG RTS+I T+ P++ N ET ST+ + R
Sbjct: 322 DSLGGRTRTSIIATISPASLNLEETLSTLEYAHRA 356
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 137 bits (346), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 101/275 (36%), Positives = 140/275 (50%), Gaps = 35/275 (12%)
Query: 1 MAYGQTGTGKTYTLGRLGKDDASER---------GIMVRALEDIISSMSV--TSDSVEVS 49
AYGQTGTGKT+T+ G+ +E GI+ R L I ++ T SV+VS
Sbjct: 102 FAYGQTGTGKTFTME--GERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTDNGTEFSVKVS 159
Query: 50 YLQLYMESIQDLLAPEK---VNIPINEDPKTGE-VSLPGATVVKXXXXXXXXXXXXVGEV 105
L++Y E + DLL P + + +DP+ V + G + G
Sbjct: 160 LLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAA 219
Query: 106 NRHAANTKLNTESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELPGDNHVPLVRKSKL 165
R A T +N SSRSH++ V ++H I EE LV+ KL
Sbjct: 220 KRTTAATLMNAYSSRSHSVFSV----TIHMKETTIDGEE--------------LVKIGKL 261
Query: 166 LIVDLAGSERIDKSGSEGPLLEEAKFINLSLSSLGKCINALAENSPHIPTRDSKLTRLLR 225
+VDLAGSE I +SG+ EA IN SL +LG+ I AL E +PH+P R+SKLTR+L+
Sbjct: 262 NLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKLTRILQ 321
Query: 226 DSFGGSARTSLIITVGPSARNHAETTSTIMFGQRG 260
DS GG RTS+I T+ P++ N ET ST+ + R
Sbjct: 322 DSLGGRTRTSIIATISPASLNLEETLSTLEYAHRA 356
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 137 bits (346), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 101/275 (36%), Positives = 140/275 (50%), Gaps = 35/275 (12%)
Query: 1 MAYGQTGTGKTYTLGRLGKDDASER---------GIMVRALEDIISSMSV--TSDSVEVS 49
AYGQTGTGKT+T+ G+ +E GI+ R L I ++ T SV+VS
Sbjct: 101 FAYGQTGTGKTFTME--GERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTDNGTEFSVKVS 158
Query: 50 YLQLYMESIQDLLAPEK---VNIPINEDPKTGE-VSLPGATVVKXXXXXXXXXXXXVGEV 105
L++Y E + DLL P + + +DP+ V + G + G
Sbjct: 159 LLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAA 218
Query: 106 NRHAANTKLNTESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELPGDNHVPLVRKSKL 165
R A T +N SSRSH++ V ++H I EE LV+ KL
Sbjct: 219 KRTTAATLMNAYSSRSHSVFSV----TIHMKETTIDGEE--------------LVKIGKL 260
Query: 166 LIVDLAGSERIDKSGSEGPLLEEAKFINLSLSSLGKCINALAENSPHIPTRDSKLTRLLR 225
+VDLAGSE I +SG+ EA IN SL +LG+ I AL E +PH+P R+SKLTR+L+
Sbjct: 261 NLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKLTRILQ 320
Query: 226 DSFGGSARTSLIITVGPSARNHAETTSTIMFGQRG 260
DS GG RTS+I T+ P++ N ET ST+ + R
Sbjct: 321 DSLGGRTRTSIIATISPASLNLEETLSTLEYAHRA 355
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 137 bits (346), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 101/275 (36%), Positives = 140/275 (50%), Gaps = 35/275 (12%)
Query: 1 MAYGQTGTGKTYTLGRLGKDDASER---------GIMVRALEDIISSMSV--TSDSVEVS 49
AYGQTGTGKT+T+ G+ +E GI+ R L I ++ T SV+VS
Sbjct: 102 FAYGQTGTGKTFTME--GERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTDNGTEFSVKVS 159
Query: 50 YLQLYMESIQDLLAPEK---VNIPINEDPKTGE-VSLPGATVVKXXXXXXXXXXXXVGEV 105
L++Y E + DLL P + + +DP+ V + G + G
Sbjct: 160 LLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAA 219
Query: 106 NRHAANTKLNTESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELPGDNHVPLVRKSKL 165
R A T +N SSRSH++ V ++H I EE LV+ KL
Sbjct: 220 KRTTAATLMNAYSSRSHSVFSV----TIHMKETTIDGEE--------------LVKIGKL 261
Query: 166 LIVDLAGSERIDKSGSEGPLLEEAKFINLSLSSLGKCINALAENSPHIPTRDSKLTRLLR 225
+VDLAGSE I +SG+ EA IN SL +LG+ I AL E +PH+P R+SKLTR+L+
Sbjct: 262 NLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKLTRILQ 321
Query: 226 DSFGGSARTSLIITVGPSARNHAETTSTIMFGQRG 260
DS GG RTS+I T+ P++ N ET ST+ + R
Sbjct: 322 DSLGGRTRTSIIATISPASLNLEETLSTLEYAHRA 356
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 137 bits (346), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 101/275 (36%), Positives = 140/275 (50%), Gaps = 35/275 (12%)
Query: 1 MAYGQTGTGKTYTLGRLGKDDASER---------GIMVRALEDIISSMSV--TSDSVEVS 49
AYGQTGTGKT+T+ G+ +E GI+ R L I ++ T SV+VS
Sbjct: 104 FAYGQTGTGKTFTME--GERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTDNGTEFSVKVS 161
Query: 50 YLQLYMESIQDLLAPEK---VNIPINEDPKTGE-VSLPGATVVKXXXXXXXXXXXXVGEV 105
L++Y E + DLL P + + +DP+ V + G + G
Sbjct: 162 LLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAA 221
Query: 106 NRHAANTKLNTESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELPGDNHVPLVRKSKL 165
R A T +N SSRSH++ V ++H I EE LV+ KL
Sbjct: 222 KRTTAATLMNAYSSRSHSVFSV----TIHMKETTIDGEE--------------LVKIGKL 263
Query: 166 LIVDLAGSERIDKSGSEGPLLEEAKFINLSLSSLGKCINALAENSPHIPTRDSKLTRLLR 225
+VDLAGSE I +SG+ EA IN SL +LG+ I AL E +PH+P R+SKLTR+L+
Sbjct: 264 NLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKLTRILQ 323
Query: 226 DSFGGSARTSLIITVGPSARNHAETTSTIMFGQRG 260
DS GG RTS+I T+ P++ N ET ST+ + R
Sbjct: 324 DSLGGRTRTSIIATISPASLNLEETLSTLEYAHRA 358
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 137 bits (345), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 95/266 (35%), Positives = 142/266 (53%), Gaps = 33/266 (12%)
Query: 1 MAYGQTGTGKTYTLGRLGKDDASERGIMVRALEDIISSMSVTSD----SVEVSYLQLYME 56
AYGQTG+GKT+T+ G + S G+ RA +++ + + S S++ ++LY +
Sbjct: 92 FAYGQTGSGKTFTI--YGHE--SNPGLTPRATKELFNILKRDSKRFSFSLKAYMVELYQD 147
Query: 57 SIQDLLAPE---KVNIPINEDPKTGEVSLPGATVVKXXXXXXXXXXXXVGEVNRHAANTK 113
++ DLL P+ ++ + I +D K G V + T + G RH + T
Sbjct: 148 TLVDLLLPKSARRLKLEIKKDSK-GMVFVENVTTIPISTLEELRMILERGSERRHVSGTN 206
Query: 114 LNTESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELPGDNHVPLVRKSKLLIVDLAGS 173
+N ESSRSH IL V I E D +T+ + KL VDLAGS
Sbjct: 207 MNEESSRSHLILSVVI-------------ESIDLQTQSAA--------RGKLSFVDLAGS 245
Query: 174 ERIDKSGSEGPLLEEAKFINLSLSSLGKCINALAENSPHIPTRDSKLTRLLRDSFGGSAR 233
ER+ KSGS G L+EA+ IN SLS+LG I AL+ + HIP R+ KLT L+ DS GG+A+
Sbjct: 246 ERVKKSGSAGNQLKEAQSINKSLSALGDVIGALSSGNQHIPYRNHKLTMLMSDSLGGNAK 305
Query: 234 TSLIITVGPSARNHAETTSTIMFGQR 259
T + + V P+ N ET +++++ R
Sbjct: 306 TLMFVNVSPAESNLDETYNSLLYASR 331
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 137 bits (344), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 99/269 (36%), Positives = 139/269 (51%), Gaps = 24/269 (8%)
Query: 1 MAYGQTGTGKTYTLGR--LGKDDASERGIMVRALED---IISSMSVTSDSVEVSYLQLYM 55
AYGQTG+GKTYT+G + E+GI+ RA+ + +I + V VSYL++Y
Sbjct: 88 FAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKLIDENDLLDCLVHVSYLEVYK 147
Query: 56 ESIQDLL--APEKVNIPINEDPKTGEVSLPGATVVKXXXXXXXXXXXXVGEVNRHAANTK 113
E +DLL +I + ED + G V L G V +G RH T
Sbjct: 148 EEFRDLLEVGTASRDIQLREDER-GNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATH 206
Query: 114 LNTESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELPGDNHVPLVRKSKLLIVDLAGS 173
LN SSRSH + V + + +R P + + SK VDLAGS
Sbjct: 207 LNHLSSRSHTVFTVTLEQR----------GRAPSRLPRPAPGQLLV---SKFHFVDLAGS 253
Query: 174 ERIDKSGSEGPLLEEAKFINLSLSSLGKCINALAE---NSPHIPTRDSKLTRLLRDSFGG 230
ER+ K+GS G L+E+ IN SL +LG I+AL + HIP RDSK+TR+L+DS GG
Sbjct: 254 ERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRGSHIPYRDSKITRILKDSLGG 313
Query: 231 SARTSLIITVGPSARNHAETTSTIMFGQR 259
+A+T +I V PS+ + ET +T+ + R
Sbjct: 314 NAKTVMIACVSPSSSDFDETLNTLNYASR 342
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 137 bits (344), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 99/270 (36%), Positives = 143/270 (52%), Gaps = 37/270 (13%)
Query: 1 MAYGQTGTGKTYTLGRLGKDDASERGIMVRALEDIISSMSVTSD----SVEVSYLQLYME 56
+AYG TG GKT+T+ LG D E G+M + + M + S VSYL++Y E
Sbjct: 110 LAYGATGAGKTHTM--LGSAD--EPGVMYLTMLHLYKCMDEIKEEKICSTAVSYLEVYNE 165
Query: 57 SIQDLLAPEKVN---IPINEDPKTGEVSLPGATVVKXXXXXXXXXXXXVGEVNRHAANTK 113
I+DLL VN + + ED + G V + G T+ + G NR T
Sbjct: 166 QIRDLL----VNSGPLAVREDTQKG-VVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTD 220
Query: 114 LNTESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELPGDNHVPLVRKSKLLIVDLAGS 173
+N SSRSHA+ +Y+R+ DK S ++ VR +K+ ++DLAGS
Sbjct: 221 MNATSSRSHAVFQIYLRQQ-----DKTASINQN-------------VRIAKMSLIDLAGS 262
Query: 174 ERIDKSGSEGPLLEEAKFINLSLSSLGKCINALAEN---SPHIPTRDSKLTRLLRDSFGG 230
ER SG++G E IN SL +LG INALA++ + HIP R+SKLTRLL+DS GG
Sbjct: 263 ERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKRKNQHIPYRNSKLTRLLKDSLGG 322
Query: 231 SARTSLIITVGPSARNHAETTSTIMFGQRG 260
+ +T +I V PS+ + +T +T+ + R
Sbjct: 323 NCQTIMIAAVSPSSVFYDDTYNTLKYANRA 352
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 137 bits (344), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 96/275 (34%), Positives = 148/275 (53%), Gaps = 36/275 (13%)
Query: 1 MAYGQTGTGKTYTLG-------RLGKDDASERGIMVRALEDIISSMSV--TSDSVEVSYL 51
AYGQTGTGKT+T+ + +D S+ GI+ RAL + + + ++ +SYL
Sbjct: 105 FAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRALSHLFDELRMMEVEYTMRISYL 164
Query: 52 QLYMESIQDLLAPE---KVNIPINEDPKTGEVSLPGATVVKXXXXXXXXXXXXVGEVNRH 108
+LY E + DLL+ + K+ I ++ K G V + G + G+ R
Sbjct: 165 ELYNEELCDLLSTDDTTKIRI-FDDSTKKGSVIIQGLEEIPVHSKDDVYKLLEKGKERRK 223
Query: 109 AANTKLNTESSRSHAI--LVVYIRRSVHEIIDKITSEEKDTRTELPGDNHVPLVRKSKLL 166
A T +N +SSRSH + +VV+IR + I E+ +++ KL
Sbjct: 224 TATTLMNAQSSRSHTVFSIVVHIRE------NGIEGED--------------MLKIGKLN 263
Query: 167 IVDLAGSERIDKSGSE-GPLLEEAKFINLSLSSLGKCINALAENSPHIPTRDSKLTRLLR 225
+VDLAGSE + K+G+E G + E IN SL +LG+ I AL + +PH+P R+SKLTRLL+
Sbjct: 264 LVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDRAPHVPYRESKLTRLLQ 323
Query: 226 DSFGGSARTSLIITVGPSARNHAETTSTIMFGQRG 260
+S GG +TS+I T+ P ++ ET ST+ + R
Sbjct: 324 ESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRA 358
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 135 bits (339), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 98/269 (36%), Positives = 140/269 (52%), Gaps = 24/269 (8%)
Query: 1 MAYGQTGTGKTYTLGR--LGKDDASERGIMVRALED---IISSMSVTSDSVEVSYLQLYM 55
AYGQTG+GKTYT+G + E+GI+ RA+ + +I + V VSYL++Y
Sbjct: 88 FAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKLIDENDLLDCLVHVSYLEVYK 147
Query: 56 ESIQDLL--APEKVNIPINEDPKTGEVSLPGATVVKXXXXXXXXXXXXVGEVNRHAANTK 113
E +DLL +I + ED + G V L G V +G RH T
Sbjct: 148 EEFRDLLEVGTASRDIQLREDER-GNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATH 206
Query: 114 LNTESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELPGDNHVPLVRKSKLLIVDLAGS 173
LN SSRSH + V +++ +R P + + SK VDLAGS
Sbjct: 207 LNHLSSRSHTVFTVTLKQR----------GRAPSRLPRPAPGQLLV---SKFHFVDLAGS 253
Query: 174 ERIDKSGSEGPLLEEAKFINLSLSSLGKCINALAE---NSPHIPTRDSKLTRLLRDSFGG 230
ER+ K+GS G L +E+ IN SL +LG I+AL + +IP RDSK+TR+L+DS GG
Sbjct: 254 ERVLKTGSTGELRKESIQINSSLLALGNVISALGDPQRRGSNIPYRDSKITRILKDSLGG 313
Query: 231 SARTSLIITVGPSARNHAETTSTIMFGQR 259
+A+T +I V PS+ + ET +T+ + R
Sbjct: 314 NAKTVMIACVSPSSSDFDETLNTLNYASR 342
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 91/273 (33%), Positives = 143/273 (52%), Gaps = 35/273 (12%)
Query: 1 MAYGQTGTGKTYTLGRLGKDDASERGIMVRALEDIISSMSV-----TSDSVEVSYLQLYM 55
AYGQTG+GK+YT+ +G D + G++ R + S VEVSY+++Y
Sbjct: 97 FAYGQTGSGKSYTM--MGTAD--QPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYN 152
Query: 56 ESIQDLLAPE--KVNIPINEDPKTGEVSLPGATVVKXXXXXXXXXXXXVGEVNRHAANTK 113
E ++DLL P+ + + + E G + G + + G +R A T
Sbjct: 153 EKVRDLLDPKGSRQTLKVREHSVLGPY-VDGLSKLAVTSYKDIESLMSEGNKSRTVAATN 211
Query: 114 LNTESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELPGDNHVPLVRKSKLLIVDLAGS 173
+N ESSRSHA+ + + +++++ + E + KL +VDLAGS
Sbjct: 212 MNEESSRSHAVFKITLTHTLYDVKSGTSGE-----------------KVGKLSLVDLAGS 254
Query: 174 ERIDKSGSEGPLLEEAKFINLSLSSLGKCINALAENSP------HIPTRDSKLTRLLRDS 227
ER K+G+ G L+E IN SL++LG I+ALA+ S +P RDS LT LL+DS
Sbjct: 255 ERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLKDS 314
Query: 228 FGGSARTSLIITVGPSARNHAETTSTIMFGQRG 260
GG+++T+++ TV P+A N+ ET ST+ + R
Sbjct: 315 LGGNSKTAMVATVSPAADNYDETLSTLRYADRA 347
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 130 bits (326), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 100/302 (33%), Positives = 153/302 (50%), Gaps = 59/302 (19%)
Query: 1 MAYGQTGTGKTYTLGRLGKDDASERGIMVRALEDIISSMSVTSD-------SVEVSYLQL 53
AYGQTG+GK+YT+ +G D + G++ R ED+ ++ D +V+VSY ++
Sbjct: 141 FAYGQTGSGKSYTM--MGTPD--QPGLIPRTCEDLFQRIASAQDETPNISYNVKVSYFEV 196
Query: 54 YMESIQDLLAPEKVNIP-----INEDPKTGEVSLPGATVVKXXXXXXXXXXXXVGEVNRH 108
Y E ++DLLAP N P + E P G + T V +G+ +R
Sbjct: 197 YNEHVRDLLAPVVPNKPPYYLKVRESPTEGPY-VKDLTEVPVRGLEEIIRWMRIGDGSRT 255
Query: 109 AANTKLNTESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELPGDNHVPLVRKSKLLIV 168
A+TK+N SSRSHA+ + +++ H++ E D TE R S++ +V
Sbjct: 256 VASTKMNDTSSRSHAVFTIMLKQIHHDL-------ETDDTTE----------RSSRIRLV 298
Query: 169 DLAGSERIDKSGSEGPLLEEAKFINLSLSSLGKCINALAE--------NSP--------- 211
DLAGSER + + G L E IN SL++LG+ I ALA+ +SP
Sbjct: 299 DLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAALADPKSSASRPSSPVKSGRGRTP 358
Query: 212 -----HIPTRDSKLTRLLRDSFGGSARTSLIITVGPSARNHAETTSTIMFG-QRGSIRIS 265
+P RDS LT LL+DS GG+++T++I + P+ ++ ET ST+ + Q IR
Sbjct: 359 GPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISPT--DYDETLSTLRYADQAKRIRTR 416
Query: 266 VV 267
V
Sbjct: 417 AV 418
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 118 bits (296), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 95/264 (35%), Positives = 134/264 (50%), Gaps = 30/264 (11%)
Query: 1 MAYGQTGTGKTYTLGRLGKDDASERGIMVRALEDIISSMSVTSDS---VEVSYLQLYMES 57
AYGQT +GKTYT+ +G +D G++ RA+ DI + D + VSY+++Y E+
Sbjct: 82 FAYGQTASGKTYTM--MGSED--HLGVIPRAIHDIFQKIKKFPDREFLLRVSYMEIYNET 137
Query: 58 IQDLLAPEKVNIP--INEDPKTGEVSLPGATVVKXXXXXXXXXXXXVGEVNRHAANTKLN 115
I DLL + P I ED V + T GE +RH TK+N
Sbjct: 138 ITDLLCGTQKMKPLIIREDVNRN-VYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMN 196
Query: 116 TESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELPGDNHVPLVRKSKLLIVDLAGSER 175
SSRSH I R + E S EK + G V+ S L +VDLAGSER
Sbjct: 197 QRSSRSHTIF-----RMILE------SREKGEPSNCEGS-----VKVSHLNLVDLAGSER 240
Query: 176 IDKSGSEGPLLEEAKFINLSLSSLGKCINALAENS--PHIPTRDSKLTRLLRDSFGGSAR 233
++G+ G L+E IN SL LG+ I L++ I RDSKLTR+L++S GG+A+
Sbjct: 241 AAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGGNAK 300
Query: 234 TSLIITVGPSARNHAETTSTIMFG 257
T +I T+ P + + ET + + F
Sbjct: 301 TRIICTITPVSFD--ETLTALQFA 322
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 112 bits (279), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 91/275 (33%), Positives = 134/275 (48%), Gaps = 38/275 (13%)
Query: 1 MAYGQTGTGKTYTL-GRLGKDDASERGIMVRALEDIIS-----SMSVTSDSVEVSYLQLY 54
AYGQTG+GKT+T+ G G D E G++ RAL + S S + S SY+++Y
Sbjct: 120 FAYGQTGSGKTFTMEGGPGGDPQLE-GLIPRALRHLFSVAQELSGQGWTYSFVASYVEIY 178
Query: 55 MESIQDLLAPEKVNIPINE------DPKTGEVSLPGATVVKXXXXXXXXXXXXVGEVNRH 108
E+++DLLA E P + E+++ A V + NR
Sbjct: 179 NETVRDLLATGTRKGQGGECEIRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRA 238
Query: 109 AANTKLNTESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELPGDNHVPLVRKSKLLIV 168
A T N SSRSH++ + I S E +R L + L +V
Sbjct: 239 VARTAQNERSSRSHSVFQLQI------------SGEHSSRG---------LQCGAPLSLV 277
Query: 169 DLAGSERIDKSGSEGP----LLEEAKFINLSLSSLGKCINALAENSPHIPTRDSKLTRLL 224
DLAGSER+D + GP L E + IN SLS+LG I AL+ H+P R+SKLT LL
Sbjct: 278 DLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMALSNKESHVPYRNSKLTYLL 337
Query: 225 RDSFGGSARTSLIITVGPSARNHAETTSTIMFGQR 259
++S GGSA+ + + + P N +E+ +++ F +
Sbjct: 338 QNSLGGSAKMLMFVNISPLEENVSESLNSLRFASK 372
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 108 bits (271), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/268 (31%), Positives = 124/268 (46%), Gaps = 37/268 (13%)
Query: 1 MAYGQTGTGKTYTLG--RLGKDDASERGIMVRALEDIISSMSVTSD-----SVEVSYLQL 53
AYGQTG+GKT+T+G GK+ +GI A D+ + + V ++ ++
Sbjct: 177 FAYGQTGSGKTHTMGGDFSGKNQDCSKGIYALAARDVFLMLKKPNYKKLELQVYATFFEI 236
Query: 54 YMESIQDLLAPEKVNIPINEDPKTGEVSLPGATVVKXXXXXXXXXXXXVGEVNRHAANTK 113
Y + DLL K + + ED K +V + G + +G R + T
Sbjct: 237 YSGKVFDLLN-RKTKLRVLEDGKQ-QVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTS 294
Query: 114 LNTESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELPGDNHVPLVRKSKLLIVDLAGS 173
N SSRSHA+ + +RR G H K ++DLAG+
Sbjct: 295 ANAHSSRSHAVFQIILRRK--------------------GKLH------GKFSLIDLAGN 328
Query: 174 ER-IDKSGSEGPLLEEAKFINLSLSSLGKCINALAENSPHIPTRDSKLTRLLRDSF-GGS 231
ER D S ++ E IN SL +L +CI AL N PH P R SKLT++LRDSF G +
Sbjct: 329 ERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKPHTPFRASKLTQVLRDSFIGEN 388
Query: 232 ARTSLIITVGPSARNHAETTSTIMFGQR 259
+RT +I T+ P + T +T+ + R
Sbjct: 389 SRTCMIATISPGMASCENTLNTLRYANR 416
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 108 bits (269), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 80/271 (29%), Positives = 133/271 (49%), Gaps = 42/271 (15%)
Query: 1 MAYGQTGTGKTYTLGRLGKDDASERGIMVRALEDIISSMSV-----TSDSVEVSYLQLYM 55
AYGQTG+GKT+T+ G++ +L+ I + + S +V ++++Y
Sbjct: 467 FAYGQTGSGKTFTMSH------PTNGMIPLSLKKIFNDIEELKEKGWSYTVRGKFIEIYN 520
Query: 56 ESIQDLLAPE---KVNIPINEDPKTGEVSLPGATVVKXXXXXXXXXXXXVGEVNRHAANT 112
E+I DLL P+ I D G+ ++ + + R A T
Sbjct: 521 EAIVDLLNPKIDPNTKYEIKHDDIAGKTTVTNVSTIDIKSPEQAITILNQANKKRSTAAT 580
Query: 113 KLNTESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELPGDNHVPLVRKSK---LLIVD 169
K N SSRSH+I ++ +L G N L ++S L ++D
Sbjct: 581 KSNDHSSRSHSIFII----------------------DLQGYNS--LTKESSYGTLNLID 616
Query: 170 LAGSERIDKSGSEGPLLEEAKFINLSLSSLGKCINALA-ENSPHIPTRDSKLTRLLRDSF 228
LAGSER++ S +EG L+E + IN SLS LG I++L ++ H+P R+SKLT LL+ S
Sbjct: 617 LAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKDGSHVPYRNSKLTYLLKHSL 676
Query: 229 GGSARTSLIITVGPSARNHAETTSTIMFGQR 259
GG+++T + + + P ++ ET +++ F +
Sbjct: 677 GGNSKTLMFVNISPLTKDLNETINSLRFATK 707
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/268 (30%), Positives = 125/268 (46%), Gaps = 37/268 (13%)
Query: 1 MAYGQTGTGKTYTLG--RLGKDDASERGIMVRALEDII-----SSMSVTSDSVEVSYLQL 53
AYGQTG+GKT+T+G GK + +GI A D+ + V V++ ++
Sbjct: 87 FAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEI 146
Query: 54 YMESIQDLLAPEKVNIPINEDPKTGEVSLPGATVVKXXXXXXXXXXXXVGEVNRHAANTK 113
Y + DLL +K + + ED + +V + G +G R + T
Sbjct: 147 YNGKVFDLL-NKKAKLRVLEDSRQ-QVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTF 204
Query: 114 LNTESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELPGDNHVPLVRKSKLLIVDLAGS 173
N+ SSRSHA + +R T+ L G K +VDLAG+
Sbjct: 205 ANSNSSRSHACFQILLR----------------TKGRLHG----------KFSLVDLAGN 238
Query: 174 ER-IDKSGSEGPLLEEAKFINLSLSSLGKCINALAENSPHIPTRDSKLTRLLRDSF-GGS 231
ER D S ++ E IN SL +L +CI AL +N H P R+SKLT++LRDSF G +
Sbjct: 239 ERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGEN 298
Query: 232 ARTSLIITVGPSARNHAETTSTIMFGQR 259
+RT +I + P + T +T+ + R
Sbjct: 299 SRTCMIAMISPGISSCEYTLNTLRYADR 326
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/268 (30%), Positives = 125/268 (46%), Gaps = 37/268 (13%)
Query: 1 MAYGQTGTGKTYTLG--RLGKDDASERGIMVRALEDII-----SSMSVTSDSVEVSYLQL 53
AYGQTG+GKT+T+G GK + +GI A D+ + V V++ ++
Sbjct: 159 FAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEI 218
Query: 54 YMESIQDLLAPEKVNIPINEDPKTGEVSLPGATVVKXXXXXXXXXXXXVGEVNRHAANTK 113
Y + DLL +K + + ED + +V + G +G R + T
Sbjct: 219 YNGKVFDLL-NKKAKLRVLEDSRQ-QVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTF 276
Query: 114 LNTESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELPGDNHVPLVRKSKLLIVDLAGS 173
N+ SSRSHA + +R T+ L G K +VDLAG+
Sbjct: 277 ANSNSSRSHACFQILLR----------------TKGRLHG----------KFSLVDLAGN 310
Query: 174 ER-IDKSGSEGPLLEEAKFINLSLSSLGKCINALAENSPHIPTRDSKLTRLLRDSF-GGS 231
ER D S ++ E IN SL +L +CI AL +N H P R+SKLT++LRDSF G +
Sbjct: 311 ERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGEN 370
Query: 232 ARTSLIITVGPSARNHAETTSTIMFGQR 259
+RT +I + P + T +T+ + R
Sbjct: 371 SRTCMIAMISPGISSCEYTLNTLRYADR 398
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 102 bits (253), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 78/265 (29%), Positives = 124/265 (46%), Gaps = 42/265 (15%)
Query: 1 MAYGQTGTGKTYTLGRL--GKDDASERGIMVRALEDIISSMSV----TSDSVEV--SYLQ 52
+AYGQTGTGK+Y++G G+ GI+ RAL DI ++ D+++V S+++
Sbjct: 99 LAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIE 158
Query: 53 LYMESIQDLLAPEKVNIPINEDPKTGEVSLPGATVVKXXXXXXXXXXXXVGEVNRHAANT 112
+Y E DLL ++P+ T + +G NR T
Sbjct: 159 IYNEKPFDLLG-STPHMPMVA------ARCQRCTCLPLHSQADLHHILELGTRNRRVRPT 211
Query: 113 KLNTESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELPGDNHVPLVRKSKLLIVDLAG 172
+N+ SSRSHAI+ ++++ H S++ IVDLAG
Sbjct: 212 NMNSNSSRSHAIVTIHVKSKTHH---------------------------SRMNIVDLAG 244
Query: 173 SERIDKSGSEGPLLEEAKFINLSLSSLGKCINALAENSPHIPTRDSKLTRLLRDSFGGSA 232
SE + ++G EG +E INL L S+ K + ++A IP RDS LT +L+ S +
Sbjct: 245 SEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTVIPYRDSVLTTVLQASLTAQS 304
Query: 233 RTSLIITVGPSARNHAETTSTIMFG 257
+ + + P + +ET ST+ FG
Sbjct: 305 YLTFLACISPHQCDLSETLSTLRFG 329
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 102 bits (253), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 78/265 (29%), Positives = 124/265 (46%), Gaps = 42/265 (15%)
Query: 1 MAYGQTGTGKTYTLGRL--GKDDASERGIMVRALEDIISSMSV----TSDSVEV--SYLQ 52
+AYGQTGTGK+Y++G G+ GI+ RAL DI ++ D+++V S+++
Sbjct: 99 LAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIE 158
Query: 53 LYMESIQDLLAPEKVNIPINEDPKTGEVSLPGATVVKXXXXXXXXXXXXVGEVNRHAANT 112
+Y E DLL ++P+ T + +G NR T
Sbjct: 159 IYNEKPFDLLG-STPHMPMVA------ARCQRCTCLPLHSQADLHHILELGTRNRRVRPT 211
Query: 113 KLNTESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELPGDNHVPLVRKSKLLIVDLAG 172
+N+ SSRSHAI+ ++++ H S++ IVDLAG
Sbjct: 212 NMNSNSSRSHAIVTIHVKSKTHH---------------------------SRMNIVDLAG 244
Query: 173 SERIDKSGSEGPLLEEAKFINLSLSSLGKCINALAENSPHIPTRDSKLTRLLRDSFGGSA 232
SE + ++G EG +E INL L S+ K + ++A IP RDS LT +L+ S +
Sbjct: 245 SEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTVIPYRDSVLTTVLQASLTAQS 304
Query: 233 RTSLIITVGPSARNHAETTSTIMFG 257
+ + + P + +ET ST+ FG
Sbjct: 305 YLTFLACISPHQCDLSETLSTLRFG 329
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 101 bits (252), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 84/268 (31%), Positives = 123/268 (45%), Gaps = 37/268 (13%)
Query: 1 MAYGQTGTGKTYTLG--RLGKDDASERGIMVRALEDII-----SSMSVTSDSVEVSYLQL 53
AYGQTG+GKT+T+G GK + +GI A D+ V V++ ++
Sbjct: 139 FAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMASRDVFLLKNQPCYRKLGLEVYVTFFEI 198
Query: 54 YMESIQDLLAPEKVNIPINEDPKTGEVSLPGATVVKXXXXXXXXXXXXVGEVNRHAANTK 113
Y + DLL +K + + ED K +V + G +G R + T
Sbjct: 199 YNGKLFDLLN-KKAKLRVLEDGKQ-QVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTF 256
Query: 114 LNTESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELPGDNHVPLVRKSKLLIVDLAGS 173
N+ SSRSHA + +R G H K +VDLAG+
Sbjct: 257 ANSNSSRSHACFQIILRAK--------------------GRMH------GKFSLVDLAGN 290
Query: 174 ER-IDKSGSEGPLLEEAKFINLSLSSLGKCINALAENSPHIPTRDSKLTRLLRDSF-GGS 231
ER D S ++ E IN SL +L +CI AL +N H P R+SKLT++LRDSF G +
Sbjct: 291 ERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGEN 350
Query: 232 ARTSLIITVGPSARNHAETTSTIMFGQR 259
+RT +I T+ P + T +T+ + R
Sbjct: 351 SRTCMIATISPGISSCEYTLNTLRYADR 378
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 100 bits (250), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 129/281 (45%), Gaps = 52/281 (18%)
Query: 1 MAYGQTGTGKTYTLGRLGKDDASERGIMVRALEDIISSMSVTSD-----SVEVSYLQLYM 55
AYGQTG+GKTYT+ G G++ L I + + +E Y+++Y
Sbjct: 90 FAYGQTGSGKTYTMLNAGD------GMIPMTLSHIFKWTANLKERGWNYEMECEYIEIYN 143
Query: 56 ESIQDLLAPEKVNIPINE-----------DPKTGEVSLPGATVVKXXXXXXXXXXXXVGE 104
E+I DLL K + I+E D + + T +K
Sbjct: 144 ETILDLLRDFKSHDNIDEILDSQKHDIRHDHEKQGTYITNVTRMKMTSTSQVDTILKKAS 203
Query: 105 VNRHAANTKLNTESSRSHAILVVYIR-RSVHEIIDKITSEEKDTRTELPGDNHVPLVRKS 163
R A T+ N SSRSH++ +V+I R++H T E +
Sbjct: 204 KMRSTAATRSNERSSRSHSVFMVHINGRNLH------TGE----------------TSQG 241
Query: 164 KLLIVDLAGSERIDKSGSEGPLLEEAKFINLSLSSLGKCINALAENSP-----HIPTRDS 218
KL +VDLAGSERI+ S G L E + IN SLS LG I AL N+P +IP R+S
Sbjct: 242 KLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYAL--NTPDAGKRYIPFRNS 299
Query: 219 KLTRLLRDSFGGSARTSLIITVGPSARNHAETTSTIMFGQR 259
KLT LL+ S G ++T + + + P + +ET +++ F +
Sbjct: 300 KLTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFASK 340
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 93/283 (32%), Positives = 136/283 (48%), Gaps = 56/283 (19%)
Query: 1 MAYGQTGTGKTYTLGRLGKDDASERGIMVRALEDIISSMSV-----TSDSVEVSYLQLYM 55
AYGQTG+GKTYT+ G GI+ + I S + S V ++++Y
Sbjct: 111 FAYGQTGSGKTYTMLNPGD------GIVPATINHIFSWIDKLAARGWSYKVSCEFIEIYN 164
Query: 56 ESIQDLL---APEKVNIPINEDPKTGEVSLP---GATVVKXXXXXXXXXXXXVGEVNRHA 109
E+I DLL AP + N N D K E+ T + V +V + A
Sbjct: 165 ENIVDLLRSGAPSQENNDRNADSKH-EIRHDQELKTTYITNITTCVLDSRDTVDKVLKRA 223
Query: 110 ------ANTKLNTESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELPGDNHVPLVRKS 163
A+T N SSRSH+I ++++ + + E G+ KS
Sbjct: 224 NKLRSTASTAANEHSSRSHSIFIIHL----------------EGKNEGTGE-------KS 260
Query: 164 K--LLIVDLAGSERIDKSGSEGPLLEEAKFINLSLSSLGKCINALAENSP-----HIPTR 216
+ L +VDLAGSER++ S G L E + IN SLS LG I+AL NSP HIP R
Sbjct: 261 QGILNLVDLAGSERLNSSMVVGERLRETQSINKSLSCLGDVIHAL--NSPDGQKRHIPFR 318
Query: 217 DSKLTRLLRDSFGGSARTSLIITVGPSARNHAETTSTIMFGQR 259
+SKLT LL+ S GS++T + + + P+A + ET +++ F +
Sbjct: 319 NSKLTYLLQYSLIGSSKTLMFVNISPAALHLNETINSLRFASK 361
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 78/265 (29%), Positives = 125/265 (47%), Gaps = 32/265 (12%)
Query: 1 MAYGQTGTGKTYT-LGRLGKDDASERGIMVRALEDIISSMSV----TSDSVEVSYLQLYM 55
AYGQTG+GKTYT LG + GI A DI + +++ + + +S+ ++Y
Sbjct: 89 FAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYC 148
Query: 56 ESIQDLLAPEKVNIPINEDPKTGEVSLPGATVVKXXXXXXXXXXXXVGEVNRHAANTKLN 115
+ DLL K+ + K EV + +++ G + R N
Sbjct: 149 GKLYDLLQKRKMVAALENGKK--EVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQN 206
Query: 116 TESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELPGDNHVPLVRKSKLLIVDLAGSER 175
ESSRSHAIL + ++ I+K TS K+ +DLAGSER
Sbjct: 207 DESSRSHAILNIDLKD-----INKNTSL-------------------GKIAFIDLAGSER 242
Query: 176 IDKSGSEGPLLE-EAKFINLSLSSLGKCINALAENSPHIPTRDSKLTRLLRDSFGGSART 234
+ S+ + + IN SL +L +CI A+ + HIP RDS+LT++LRD F G +++
Sbjct: 243 GADTVSQNKQTQTDGANINRSLLALKECIRAMDSDKNHIPFRDSELTKVLRDIFVGKSKS 302
Query: 235 SLIITVGPSARNHAETTSTIMFGQR 259
+I + P+ +T +T+ + R
Sbjct: 303 IMIANISPTISCCEQTLNTLRYSSR 327
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 90.9 bits (224), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 83/277 (29%), Positives = 124/277 (44%), Gaps = 46/277 (16%)
Query: 1 MAYGQTGTGKTYTLGRLGKDDASERGIMVRALEDIISSMSVTSDS-----VEVSYLQLYM 55
AYGQTG+GKT+T+ G GI+ + I + ++ V ++++Y
Sbjct: 145 FAYGQTGSGKTFTMLNPGD------GIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYN 198
Query: 56 ESIQDLLAPEKVNIP---------INEDPKTGEVSLPGATVVKXXXXXXXXXXXXVGEVN 106
E+I DLL + N I D +T ++ T VK
Sbjct: 199 ENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTSVKLESEEMVEIILKKANKL 258
Query: 107 RHAANTKLNTESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELPGDNHVPLVRKSKLL 166
R A+T N SSRSH+I +++ L G N L
Sbjct: 259 RSTASTASNEHSSRSHSIFIIH----------------------LSGSNAKTGAHSYGTL 296
Query: 167 -IVDLAGSERIDKSGSEGPLLEEAKFINLSLSSLGKCINALAE---NSPHIPTRDSKLTR 222
+VDLAGSERI+ S G L E + IN SLS+LG I+AL + HIP R+SKLT
Sbjct: 297 NLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDSTKRHIPFRNSKLTY 356
Query: 223 LLRDSFGGSARTSLIITVGPSARNHAETTSTIMFGQR 259
LL+ S G ++T + + + PS+ + ET +++ F +
Sbjct: 357 LLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASK 393
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 82/277 (29%), Positives = 122/277 (44%), Gaps = 46/277 (16%)
Query: 1 MAYGQTGTGKTYTLGRLGKDDASERGIMVRALEDIISSMSVTSDS-----VEVSYLQLYM 55
AYGQTG+GKT+T+ G GI+ + I + ++ V ++++Y
Sbjct: 100 FAYGQTGSGKTFTMLNPGD------GIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYN 153
Query: 56 ESIQDLLAPEKVNIP---------INEDPKTGEVSLPGATVVKXXXXXXXXXXXXVGEVN 106
E+I DLL + N I D +T ++ T K
Sbjct: 154 ENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKL 213
Query: 107 RHAANTKLNTESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELPGDNHVPLVRKSKLL 166
R A+T N SSRSH+I +++ L G N L
Sbjct: 214 RSTASTASNEHSSRSHSIFIIH----------------------LSGSNAKTGAHSYGTL 251
Query: 167 -IVDLAGSERIDKSGSEGPLLEEAKFINLSLSSLGKCINALAE---NSPHIPTRDSKLTR 222
+VDLAGSERI+ S G L E + IN SLS LG I+AL + HIP R+SKLT
Sbjct: 252 NLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTY 311
Query: 223 LLRDSFGGSARTSLIITVGPSARNHAETTSTIMFGQR 259
LL+ S G ++T + + + PS+ + ET +++ F +
Sbjct: 312 LLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASK 348
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 82/277 (29%), Positives = 122/277 (44%), Gaps = 46/277 (16%)
Query: 1 MAYGQTGTGKTYTLGRLGKDDASERGIMVRALEDIISSMSVTSDS-----VEVSYLQLYM 55
AYGQTG+GKT+T+ G GI+ + I + ++ V ++++Y
Sbjct: 88 FAYGQTGSGKTFTMLNPGD------GIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYN 141
Query: 56 ESIQDLLAPEKVNIP---------INEDPKTGEVSLPGATVVKXXXXXXXXXXXXVGEVN 106
E+I DLL + N I D +T ++ T K
Sbjct: 142 ENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKL 201
Query: 107 RHAANTKLNTESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELPGDNHVPLVRKSKLL 166
R A+T N SSRSH+I +++ L G N L
Sbjct: 202 RSTASTASNEHSSRSHSIFIIH----------------------LSGSNAKTGAHSYGTL 239
Query: 167 -IVDLAGSERIDKSGSEGPLLEEAKFINLSLSSLGKCINALAE---NSPHIPTRDSKLTR 222
+VDLAGSERI+ S G L E + IN SLS LG I+AL + HIP R+SKLT
Sbjct: 240 NLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTY 299
Query: 223 LLRDSFGGSARTSLIITVGPSARNHAETTSTIMFGQR 259
LL+ S G ++T + + + PS+ + ET +++ F +
Sbjct: 300 LLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASK 336
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 122/264 (46%), Gaps = 37/264 (14%)
Query: 1 MAYGQTGTGKTYTLGRLGKDDASER-GIMVRALEDIISSMSVTSD-----SVEVSYLQLY 54
AYGQTG+GKTYT+ D E G++ R ++ + S+ + ++ ++L++Y
Sbjct: 137 FAYGQTGSGKTYTM-----DGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIY 191
Query: 55 MESIQDLLAPEKVNIPIN-EDPKTGEVSLPGATVVKXXXXXXXXXXXXVGEVNRHAANTK 113
E + DLL+ E+ ++ I ++ + T ++NR A+T
Sbjct: 192 NEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTA 251
Query: 114 LNTESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELPGDNHVPLVRKSKLLIVDLAGS 173
N SSRSHA+ + E+I + +++ + + +VDLAGS
Sbjct: 252 GNERSSRSHAVTKL-------ELIGRHAEKQE--------------ISVGSINLVDLAGS 290
Query: 174 ERIDKSGSEGPLLEEAKFINLSLSSLGKCINALAENSPHIPTRDSKLTRLLRDSFGGSAR 233
E S + E K IN SLS L I AL + HIP R+SKLT LL S GG+++
Sbjct: 291 E----SPKTSTRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSK 346
Query: 234 TSLIITVGPSARNHAETTSTIMFG 257
T + I V P E+ ++ F
Sbjct: 347 TLMFINVSPFQDCFQESVKSLRFA 370
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 81/277 (29%), Positives = 121/277 (43%), Gaps = 46/277 (16%)
Query: 1 MAYGQTGTGKTYTLGRLGKDDASERGIMVRALEDIISSMSVTSDS-----VEVSYLQLYM 55
AYGQTG+GKT+T+ G GI+ + I + ++ V ++++Y
Sbjct: 89 FAYGQTGSGKTFTMLNPGD------GIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYN 142
Query: 56 ESIQDLLAPEKVNIP---------INEDPKTGEVSLPGATVVKXXXXXXXXXXXXVGEVN 106
E+I DLL + N I D +T ++ T K
Sbjct: 143 ENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKL 202
Query: 107 RHAANTKLNTESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELPGDNHVPLVRKSKLL 166
R A+T N SSRSH+I +++ L G N L
Sbjct: 203 RSTASTASNEHSSRSHSIFIIH----------------------LSGSNAKTGAHSYGTL 240
Query: 167 -IVDLAGSERIDKSGSEGPLLEEAKFINLSLSSLGKCINALAE---NSPHIPTRDSKLTR 222
+VDLAGS RI+ S G L E + IN SLS LG I+AL + HIP R+SKLT
Sbjct: 241 NLVDLAGSARINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTY 300
Query: 223 LLRDSFGGSARTSLIITVGPSARNHAETTSTIMFGQR 259
LL+ S G ++T + + + PS+ + ET +++ F +
Sbjct: 301 LLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASK 337
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 122/264 (46%), Gaps = 37/264 (14%)
Query: 1 MAYGQTGTGKTYTLGRLGKDDASER-GIMVRALEDIISSMSVTSD-----SVEVSYLQLY 54
AYGQTG+GKTYT+ D E G++ R ++ + S+ + ++ ++L++Y
Sbjct: 143 FAYGQTGSGKTYTM-----DGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIY 197
Query: 55 MESIQDLLAPEKVNIPIN-EDPKTGEVSLPGATVVKXXXXXXXXXXXXVGEVNRHAANTK 113
E + DLL+ E+ ++ I ++ + T ++NR A+T
Sbjct: 198 NEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTA 257
Query: 114 LNTESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELPGDNHVPLVRKSKLLIVDLAGS 173
N SSRSHA+ + E+I + +++ + + +VDLAGS
Sbjct: 258 GNERSSRSHAVTKL-------ELIGRHAEKQE--------------ISVGSINLVDLAGS 296
Query: 174 ERIDKSGSEGPLLEEAKFINLSLSSLGKCINALAENSPHIPTRDSKLTRLLRDSFGGSAR 233
E S + E K IN SLS L I AL + HIP R+SKLT LL S GG+++
Sbjct: 297 E----SPKTSTRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSK 352
Query: 234 TSLIITVGPSARNHAETTSTIMFG 257
T + I V P E+ ++ F
Sbjct: 353 TLMFINVSPFQDCFQESVKSLRFA 376
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 81/277 (29%), Positives = 121/277 (43%), Gaps = 46/277 (16%)
Query: 1 MAYGQTGTGKTYTLGRLGKDDASERGIMVRALEDIISSMSVTSDS-----VEVSYLQLYM 55
AYGQTG+GKT+T+ G GI+ + I + ++ V ++++Y
Sbjct: 89 FAYGQTGSGKTFTMLNPGD------GIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYN 142
Query: 56 ESIQDLLAPEKVNIP---------INEDPKTGEVSLPGATVVKXXXXXXXXXXXXVGEVN 106
E+I DLL + N I D +T ++ T K
Sbjct: 143 ENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKL 202
Query: 107 RHAANTKLNTESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELPGDNHVPLVRKSKLL 166
R A+T N SSRSH+I +++ L G N L
Sbjct: 203 RSTASTASNEHSSRSHSIFIIH----------------------LSGSNAKTGAHSYGTL 240
Query: 167 -IVDLAGSERIDKSGSEGPLLEEAKFINLSLSSLGKCINALAE---NSPHIPTRDSKLTR 222
+VDLAGSERI+ S G L E + I SLS LG I+AL + HIP R+SKLT
Sbjct: 241 NLVDLAGSERINVSQVVGDRLRETQNIKKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTY 300
Query: 223 LLRDSFGGSARTSLIITVGPSARNHAETTSTIMFGQR 259
LL+ S G ++T + + + PS+ + ET +++ F +
Sbjct: 301 LLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASK 337
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 78/265 (29%), Positives = 120/265 (45%), Gaps = 39/265 (14%)
Query: 1 MAYGQTGTGKTYTLGRLGKDDASER-GIMVRALEDIISSMSVTSD-----SVEVSYLQLY 54
AYGQTG+GKTYT+ D E G++ R ++ + S+ + ++ ++L++Y
Sbjct: 151 FAYGQTGSGKTYTM-----DGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIY 205
Query: 55 MESIQDLLAPEKVNIPIN-EDPKTGEVSLPGATVVKXXXXXXXXXXXXVGEVNRHAANTK 113
E + DLL+ E+ ++ I ++ + T ++NR A+T
Sbjct: 206 NEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTA 265
Query: 114 LNTESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELPGDN-HVPLVRKSKLLIVDLAG 172
N SSRSHA+ T+ EL G + + + +VDLAG
Sbjct: 266 GNERSSRSHAV----------------------TKLELIGRHAEKQEISVGSINLVDLAG 303
Query: 173 SERIDKSGSEGPLLEEAKFINLSLSSLGKCINALAENSPHIPTRDSKLTRLLRDSFGGSA 232
SE S + E K IN SLS L I AL + HIP R+SKLT LL S GG++
Sbjct: 304 SE----SPKTSTRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNS 359
Query: 233 RTSLIITVGPSARNHAETTSTIMFG 257
+T + I V P E+ ++ F
Sbjct: 360 KTLMFINVSPFQDCFQESVKSLRFA 384
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 81/277 (29%), Positives = 121/277 (43%), Gaps = 46/277 (16%)
Query: 1 MAYGQTGTGKTYTLGRLGKDDASERGIMVRALEDIISSMSVTSD-----SVEVSYLQLYM 55
AYGQTG+GKT+T+ G GI+ + I + ++ V ++++Y
Sbjct: 89 FAYGQTGSGKTFTMLNPGD------GIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYN 142
Query: 56 ESIQDLLAPEKVNI---------PINEDPKTGEVSLPGATVVKXXXXXXXXXXXXVGEVN 106
E+I DLL + N I D +T ++ T K
Sbjct: 143 ENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKL 202
Query: 107 RHAANTKLNTESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELPGDNHVPLVRKSKLL 166
R A+T N SS SH+I +++ L G N L
Sbjct: 203 RSTASTASNEHSSASHSIFIIH----------------------LSGSNAKTGAHSYGTL 240
Query: 167 -IVDLAGSERIDKSGSEGPLLEEAKFINLSLSSLGKCINALAE---NSPHIPTRDSKLTR 222
+VDLAGSERI+ S G L E + IN SLS LG I+AL + HIP R+SKLT
Sbjct: 241 NLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTY 300
Query: 223 LLRDSFGGSARTSLIITVGPSARNHAETTSTIMFGQR 259
LL+ S G ++T + + + PS+ + ET +++ F +
Sbjct: 301 LLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASK 337
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus
Length = 100
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/73 (57%), Positives = 54/73 (73%), Gaps = 1/73 (1%)
Query: 189 AKFINLSLSSLGKCINALAENSP-HIPTRDSKLTRLLRDSFGGSARTSLIITVGPSARNH 247
AK IN SLS+LG I+ALAE + H+P RDSK+TR+L+DS G+ RT+++I PS N
Sbjct: 1 AKNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNE 60
Query: 248 AETTSTIMFGQRG 260
AET ST+MFGQR
Sbjct: 61 AETKSTLMFGQRA 73
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 120/265 (45%), Gaps = 39/265 (14%)
Query: 1 MAYGQTGTGKTYTLGRLGKDDASER-GIMVRALEDIISSMSVTSD-----SVEVSYLQLY 54
AYGQ+G+GKTYT+ D E G++ R ++ + S+ + ++ ++L++Y
Sbjct: 140 FAYGQSGSGKTYTM-----DGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIY 194
Query: 55 MESIQDLLAPEKVNIPIN-EDPKTGEVSLPGATVVKXXXXXXXXXXXXVGEVNRHAANTK 113
E + DLL+ E+ ++ I ++ + T ++NR A+T
Sbjct: 195 NEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTA 254
Query: 114 LNTESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELPGDN-HVPLVRKSKLLIVDLAG 172
N SSRSHA+ T+ EL G + + + +VDLAG
Sbjct: 255 GNERSSRSHAV----------------------TKLELIGRHAEKQEISVGSINLVDLAG 292
Query: 173 SERIDKSGSEGPLLEEAKFINLSLSSLGKCINALAENSPHIPTRDSKLTRLLRDSFGGSA 232
SE S + E K IN SLS L I AL + HIP R+SKLT LL S GG++
Sbjct: 293 SE----SPKTSTRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNS 348
Query: 233 RTSLIITVGPSARNHAETTSTIMFG 257
+T + I V P E+ ++ F
Sbjct: 349 KTLMFINVSPFQDCFQESVKSLRFA 373
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 85.1 bits (209), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 40/69 (57%), Positives = 52/69 (75%), Gaps = 1/69 (1%)
Query: 193 NLSLSSLGKCINALAENSP-HIPTRDSKLTRLLRDSFGGSARTSLIITVGPSARNHAETT 251
N SLS+LG I+ALAE + H+P RDSK+TR+L+DS GG+ RT+++I PS N AET
Sbjct: 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETK 60
Query: 252 STIMFGQRG 260
ST+MFGQR
Sbjct: 61 STLMFGQRA 69
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 84.3 bits (207), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 121/264 (45%), Gaps = 37/264 (14%)
Query: 1 MAYGQTGTGKTYTLGRLGKDDASER-GIMVRALEDIISSMSVTSD-----SVEVSYLQLY 54
AYGQTG+GKTYT+ D E G++ R ++ + S+ + ++ ++L++Y
Sbjct: 140 FAYGQTGSGKTYTM-----DGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIY 194
Query: 55 MESIQDLLAPEKVNIPIN-EDPKTGEVSLPGATVVKXXXXXXXXXXXXVGEVNRHAANTK 113
E + DLL+ E+ ++ I ++ + T ++NR A+T
Sbjct: 195 NEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTA 254
Query: 114 LNTESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELPGDNHVPLVRKSKLLIVDLAGS 173
N SSRSHA+ + E+I + +++ + + +VDLAGS
Sbjct: 255 GNERSSRSHAVTKL-------ELIGRHAEKQE--------------ISVGSINLVDLAGS 293
Query: 174 ERIDKSGSEGPLLEEAKFINLSLSSLGKCINALAENSPHIPTRDSKLTRLLRDSFGGSAR 233
E S + E K I SLS L I AL + HIP R+SKLT LL S GG+++
Sbjct: 294 E----SPKTSTRMTETKNIKRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSK 349
Query: 234 TSLIITVGPSARNHAETTSTIMFG 257
T + I V P E+ ++ F
Sbjct: 350 TLMFINVSPFQDCFQESVKSLRFA 373
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 81.3 bits (199), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 90/181 (49%), Gaps = 29/181 (16%)
Query: 1 MAYGQTGTGKTYTL-GRLGKDDASERGIMVRALEDIISSMSVTSDSVE----VSYLQLYM 55
AYGQT +GKT+T+ G+L D GI+ R DI + +++E VSY ++Y+
Sbjct: 82 FAYGQTSSGKTHTMEGKL--HDPQLMGIIPRIAHDIFDHIYSMDENLEFHIKVSYFEIYL 139
Query: 56 ESIQDLLAPEKVNIPINEDPKTGEVSLPGATVVKXXXXXXXXXXXXVGEVNRHAANTKLN 115
+ I+DLL K N+ ++ED K + G T G+ NRH A T +N
Sbjct: 140 DKIRDLLDVSKTNLAVHED-KNRVPYVKGCTERFVSSPEEVMDVIDEGKANRHVAVTNMN 198
Query: 116 TESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELPGDNHVPLVRKSKLLIVDLAGSER 175
SSRSH+I ++ I++ E +T +L G KL +VDLAGSE+
Sbjct: 199 EHSSRSHSIFLINIKQ-----------ENVETEKKLSG----------KLYLVDLAGSEK 237
Query: 176 I 176
+
Sbjct: 238 V 238
>pdb|1T98|A Chain A, Crystal Structure Of Mukf(1-287)
pdb|1T98|B Chain B, Crystal Structure Of Mukf(1-287)
Length = 287
Score = 30.8 bits (68), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 35/76 (46%)
Query: 157 VPLVRKSKLLIVDLAGSERIDKSGSEGPLLEEAKFINLSLSSLGKCINALAENSPHIPTR 216
+P+ R S LL V ER+D SEG L++ + ++ + + I A N+ + R
Sbjct: 24 LPVDRLSFLLAVATLNGERLDGEXSEGELVDAFRHVSDAFEQTSETIGVRANNAINDXVR 83
Query: 217 DSKLTRLLRDSFGGSA 232
L R + G+A
Sbjct: 84 QRLLNRFTSEQAEGNA 99
>pdb|3RPU|A Chain A, Crystal Structure Of The Muke-Mukf Complex
pdb|3RPU|B Chain B, Crystal Structure Of The Muke-Mukf Complex
pdb|3RPU|X Chain X, Crystal Structure Of The Muke-Mukf Complex
Length = 460
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 35/76 (46%)
Query: 157 VPLVRKSKLLIVDLAGSERIDKSGSEGPLLEEAKFINLSLSSLGKCINALAENSPHIPTR 216
+P+ R S LL V ER+D SEG L++ + ++ + + I A N+ + R
Sbjct: 44 LPVDRLSFLLAVATLNGERLDGEMSEGELVDAFRHVSDAFEQTSETIGVRANNAINDMVR 103
Query: 217 DSKLTRLLRDSFGGSA 232
L R + G+A
Sbjct: 104 QRLLNRFTSEQAEGNA 119
>pdb|3EUH|A Chain A, Crystal Structure Of The Muke-Mukf Complex
pdb|3EUH|B Chain B, Crystal Structure Of The Muke-Mukf Complex
Length = 440
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 35/76 (46%)
Query: 157 VPLVRKSKLLIVDLAGSERIDKSGSEGPLLEEAKFINLSLSSLGKCINALAENSPHIPTR 216
+P+ R S LL V ER+D SEG L++ + ++ + + I A N+ + R
Sbjct: 24 LPVDRLSFLLAVATLNGERLDGEMSEGELVDAFRHVSDAFEQTSETIGVRANNAINDMVR 83
Query: 217 DSKLTRLLRDSFGGSA 232
L R + G+A
Sbjct: 84 QRLLNRFTSEQAEGNA 99
>pdb|1LGA|A Chain A, Crystallographic Refinement Of Lignin Peroxidase At 2
Angstroms
pdb|1LGA|B Chain B, Crystallographic Refinement Of Lignin Peroxidase At 2
Angstroms
pdb|1LLP|A Chain A, Lignin Peroxidase (isozyme H2) Pi 4.15
Length = 343
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 24/35 (68%)
Query: 180 GSEGPLLEEAKFINLSLSSLGKCINALAENSPHIP 214
G++ L+++ +FI L+L+ LG+ NA+ + S IP
Sbjct: 256 GNQSKLVDDFQFIFLALTQLGQDPNAMTDCSDVIP 290
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.130 0.350
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,764,410
Number of Sequences: 62578
Number of extensions: 240261
Number of successful extensions: 777
Number of sequences better than 100.0: 64
Number of HSP's better than 100.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 522
Number of HSP's gapped (non-prelim): 66
length of query: 267
length of database: 14,973,337
effective HSP length: 97
effective length of query: 170
effective length of database: 8,903,271
effective search space: 1513556070
effective search space used: 1513556070
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.9 bits)