Query 024439
Match_columns 267
No_of_seqs 122 out of 1191
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 04:36:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024439.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024439hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4280 Kinesin-like protein [ 100.0 1.3E-69 2.8E-74 492.9 15.5 244 1-266 90-339 (574)
2 KOG0245 Kinesin-like protein [ 100.0 3.2E-69 6.9E-74 503.2 11.8 246 1-266 92-351 (1221)
3 cd01373 KISc_KLP2_like Kinesin 100.0 6.6E-67 1.4E-71 462.7 25.9 243 1-263 79-337 (337)
4 KOG0243 Kinesin-like protein [ 100.0 8.1E-68 1.7E-72 500.8 16.7 247 1-265 133-392 (1041)
5 cd01370 KISc_KIP3_like Kinesin 100.0 5E-66 1.1E-70 457.2 25.8 240 1-263 92-338 (338)
6 PLN03188 kinesin-12 family pro 100.0 2.7E-65 5.8E-70 488.5 26.0 248 1-266 170-437 (1320)
7 KOG0240 Kinesin (SMY1 subfamil 100.0 4.4E-66 9.5E-71 459.5 16.0 244 1-267 87-335 (607)
8 cd01368 KISc_KIF23_like Kinesi 100.0 1.5E-64 3.2E-69 448.8 25.4 241 1-261 93-345 (345)
9 cd01364 KISc_BimC_Eg5 Kinesin 100.0 1.3E-63 2.8E-68 444.9 27.0 248 1-266 86-346 (352)
10 cd01365 KISc_KIF1A_KIF1B Kines 100.0 2.8E-63 6E-68 443.0 27.2 244 1-266 93-352 (356)
11 cd01371 KISc_KIF3 Kinesin moto 100.0 3.3E-63 7.1E-68 438.9 27.2 243 1-263 86-333 (333)
12 cd01369 KISc_KHC_KIF5 Kinesin 100.0 5.1E-63 1.1E-67 436.8 25.9 240 1-263 81-325 (325)
13 cd01376 KISc_KID_like Kinesin 100.0 3.8E-63 8.3E-68 436.0 24.9 233 1-261 85-319 (319)
14 cd01375 KISc_KIF9_like Kinesin 100.0 6.1E-63 1.3E-67 437.1 26.2 240 1-261 85-334 (334)
15 cd01372 KISc_KIF4 Kinesin moto 100.0 1.5E-62 3.2E-67 436.7 26.7 252 1-264 78-341 (341)
16 cd01374 KISc_CENP_E Kinesin mo 100.0 2.3E-62 5E-67 431.8 26.2 239 1-263 78-321 (321)
17 cd01367 KISc_KIF2_like Kinesin 100.0 1.5E-62 3.2E-67 432.6 24.3 231 1-261 89-322 (322)
18 KOG0242 Kinesin-like protein [ 100.0 6E-64 1.3E-68 471.7 16.4 239 1-266 91-334 (675)
19 cd01366 KISc_C_terminal Kinesi 100.0 2.5E-61 5.3E-66 426.9 26.5 239 1-265 82-328 (329)
20 PF00225 Kinesin: Kinesin moto 100.0 1.1E-61 2.5E-66 430.4 19.4 244 1-263 79-335 (335)
21 smart00129 KISc Kinesin motor, 100.0 3.8E-59 8.1E-64 414.1 26.4 242 1-266 84-331 (335)
22 cd00106 KISc Kinesin motor dom 100.0 5.5E-58 1.2E-62 405.7 26.3 237 1-261 83-328 (328)
23 KOG0246 Kinesin-like protein [ 100.0 9.2E-59 2E-63 412.0 20.8 238 1-264 296-542 (676)
24 KOG0241 Kinesin-like protein [ 100.0 2.8E-59 6E-64 431.8 14.3 244 1-266 98-354 (1714)
25 KOG0239 Kinesin (KAR3 subfamil 100.0 5.4E-57 1.2E-61 423.2 15.3 238 1-263 397-640 (670)
26 KOG0247 Kinesin-like protein [ 100.0 1.1E-55 2.3E-60 402.4 14.3 241 1-265 119-438 (809)
27 KOG0244 Kinesin-like protein [ 100.0 1.6E-53 3.5E-58 398.1 0.5 244 1-266 70-320 (913)
28 COG5059 KIP1 Kinesin-like prot 100.0 2E-50 4.3E-55 376.8 18.4 241 1-267 94-340 (568)
29 cd01363 Motor_domain Myosin an 100.0 1.4E-43 3E-48 289.1 16.8 159 1-242 28-186 (186)
30 COG2804 PulE Type II secretory 94.6 0.031 6.7E-07 51.7 3.4 12 3-14 264-275 (500)
31 COG0556 UvrB Helicase subunit 94.2 0.029 6.2E-07 52.1 2.3 57 3-59 38-101 (663)
32 smart00053 DYNc Dynamin, GTPas 93.4 0.74 1.6E-05 39.0 9.2 52 90-175 86-137 (240)
33 PRK06620 hypothetical protein; 88.7 0.13 2.7E-06 42.8 -0.0 13 2-14 49-61 (214)
34 COG2805 PilT Tfp pilus assembl 88.7 0.14 2.9E-06 44.6 0.1 13 2-14 130-142 (353)
35 PF01935 DUF87: Domain of unkn 88.6 0.13 2.9E-06 42.9 0.0 57 193-250 164-220 (229)
36 PF13245 AAA_19: Part of AAA d 88.2 0.15 3.2E-06 35.0 -0.0 12 3-14 16-27 (76)
37 COG1474 CDC6 Cdc6-related prot 88.1 0.43 9.3E-06 43.1 3.0 14 1-14 46-59 (366)
38 PF05673 DUF815: Protein of un 86.7 0.26 5.5E-06 41.7 0.6 92 2-125 57-155 (249)
39 PF00308 Bac_DnaA: Bacterial d 86.0 0.22 4.7E-06 41.6 -0.1 13 2-14 39-51 (219)
40 PRK06893 DNA replication initi 85.9 0.23 5.1E-06 41.6 -0.0 13 2-14 44-56 (229)
41 cd00046 DEXDc DEAD-like helica 85.6 0.23 5E-06 36.8 -0.2 13 2-14 5-17 (144)
42 PRK09087 hypothetical protein; 85.4 0.25 5.5E-06 41.4 -0.0 12 3-14 50-61 (226)
43 PRK08727 hypothetical protein; 85.2 0.26 5.6E-06 41.5 -0.0 13 2-14 46-58 (233)
44 smart00382 AAA ATPases associa 85.2 0.26 5.6E-06 36.5 -0.1 13 2-14 7-19 (148)
45 PRK08084 DNA replication initi 84.9 0.27 5.9E-06 41.4 -0.0 13 2-14 50-62 (235)
46 COG1125 OpuBA ABC-type proline 84.6 0.21 4.5E-06 42.5 -0.9 12 3-14 33-44 (309)
47 PRK05642 DNA replication initi 83.1 0.36 7.9E-06 40.6 -0.0 13 2-14 50-62 (234)
48 PF13401 AAA_22: AAA domain; P 83.0 0.29 6.3E-06 36.6 -0.6 13 2-14 9-21 (131)
49 PF02456 Adeno_IVa2: Adenoviru 82.8 0.38 8.3E-06 42.0 -0.0 13 2-14 92-104 (369)
50 cd01131 PilT Pilus retraction 82.6 0.39 8.4E-06 39.3 -0.0 12 3-14 7-18 (198)
51 PF13555 AAA_29: P-loop contai 81.7 0.44 9.6E-06 31.3 -0.0 12 3-14 29-40 (62)
52 PF00448 SRP54: SRP54-type pro 81.1 0.46 9.9E-06 38.9 -0.1 12 3-14 7-18 (196)
53 PF00004 AAA: ATPase family as 80.8 0.49 1.1E-05 35.2 -0.0 13 2-14 3-15 (132)
54 KOG0926 DEAH-box RNA helicase 80.8 0.76 1.7E-05 45.1 1.2 27 2-28 276-308 (1172)
55 KOG0989 Replication factor C, 80.8 0.74 1.6E-05 40.2 1.0 13 2-14 62-74 (346)
56 PF13086 AAA_11: AAA domain; P 80.6 0.49 1.1E-05 38.9 -0.1 12 3-14 23-34 (236)
57 KOG2543 Origin recognition com 80.6 0.71 1.5E-05 41.5 0.8 13 2-14 35-47 (438)
58 PF00910 RNA_helicase: RNA hel 79.7 1.1 2.4E-05 32.7 1.5 24 2-39 3-26 (107)
59 PF04851 ResIII: Type III rest 79.1 0.58 1.3E-05 36.9 -0.1 13 3-15 31-43 (184)
60 PRK06526 transposase; Provisio 78.9 0.63 1.4E-05 39.8 -0.0 15 2-16 103-117 (254)
61 PF00580 UvrD-helicase: UvrD/R 78.9 1.1 2.5E-05 38.6 1.6 12 3-14 19-30 (315)
62 TIGR02524 dot_icm_DotB Dot/Icm 78.7 0.64 1.4E-05 41.8 -0.0 13 2-14 139-151 (358)
63 COG0593 DnaA ATPase involved i 78.5 0.65 1.4E-05 42.3 -0.0 13 2-14 118-130 (408)
64 PF12846 AAA_10: AAA-like doma 78.3 0.6 1.3E-05 40.1 -0.3 13 2-14 6-18 (304)
65 PRK10436 hypothetical protein; 78.2 0.7 1.5E-05 43.0 0.1 13 2-14 223-235 (462)
66 cd00009 AAA The AAA+ (ATPases 78.0 0.69 1.5E-05 34.5 -0.0 13 2-14 24-36 (151)
67 PF01695 IstB_IS21: IstB-like 77.6 0.75 1.6E-05 37.0 0.1 13 2-14 52-64 (178)
68 TIGR00362 DnaA chromosomal rep 77.4 0.73 1.6E-05 42.1 -0.1 13 2-14 141-153 (405)
69 COG5008 PilU Tfp pilus assembl 77.1 0.91 2E-05 39.0 0.5 12 3-14 133-144 (375)
70 TIGR03420 DnaA_homol_Hda DnaA 77.0 0.77 1.7E-05 38.0 -0.0 13 2-14 43-55 (226)
71 TIGR02525 plasmid_TraJ plasmid 76.9 0.78 1.7E-05 41.5 -0.0 13 2-14 154-166 (372)
72 TIGR01420 pilT_fam pilus retra 76.8 0.77 1.7E-05 41.0 -0.1 12 3-14 128-139 (343)
73 PF13479 AAA_24: AAA domain 76.7 0.83 1.8E-05 37.8 0.1 13 2-14 8-20 (213)
74 PRK06835 DNA replication prote 76.4 0.81 1.7E-05 40.7 -0.1 13 2-14 188-200 (329)
75 PRK14088 dnaA chromosomal repl 76.2 0.82 1.8E-05 42.4 -0.1 13 2-14 135-147 (440)
76 COG1660 Predicted P-loop-conta 76.1 2.9 6.2E-05 35.8 3.1 34 3-36 7-45 (286)
77 PF13671 AAA_33: AAA domain; P 75.8 0.78 1.7E-05 34.8 -0.3 14 1-14 3-16 (143)
78 PRK12377 putative replication 75.7 0.87 1.9E-05 38.8 -0.0 12 3-14 107-118 (248)
79 PF13207 AAA_17: AAA domain; P 75.7 0.89 1.9E-05 33.5 0.0 12 3-14 5-16 (121)
80 PRK06921 hypothetical protein; 75.7 0.85 1.9E-05 39.2 -0.1 13 2-14 122-134 (266)
81 PRK00149 dnaA chromosomal repl 74.8 0.94 2E-05 42.0 -0.1 13 2-14 153-165 (450)
82 COG1136 SalX ABC-type antimicr 74.6 0.97 2.1E-05 37.9 -0.0 12 3-14 37-48 (226)
83 PF06309 Torsin: Torsin; Inte 74.5 1.8 4E-05 32.7 1.4 22 3-38 59-80 (127)
84 TIGR02538 type_IV_pilB type IV 74.4 1 2.2E-05 43.2 0.0 13 2-14 321-333 (564)
85 TIGR03499 FlhF flagellar biosy 74.3 1 2.2E-05 39.1 0.0 12 3-14 200-211 (282)
86 PRK08181 transposase; Validate 74.3 1.1 2.3E-05 38.7 0.2 15 2-16 111-125 (269)
87 PRK08903 DnaA regulatory inact 74.1 1.1 2.4E-05 37.3 0.2 13 2-14 47-59 (227)
88 KOG0335 ATP-dependent RNA heli 74.0 2 4.4E-05 39.8 1.9 56 1-56 115-189 (482)
89 TIGR02928 orc1/cdc6 family rep 73.9 3.3 7.1E-05 37.0 3.2 13 2-14 45-57 (365)
90 PRK08116 hypothetical protein; 73.9 1 2.2E-05 38.8 -0.1 13 2-14 119-131 (268)
91 PF01580 FtsK_SpoIIIE: FtsK/Sp 73.7 0.85 1.8E-05 37.3 -0.6 14 1-14 42-55 (205)
92 PF00437 T2SE: Type II/IV secr 73.4 1 2.2E-05 38.5 -0.1 12 3-14 133-144 (270)
93 TIGR02533 type_II_gspE general 73.2 1.1 2.4E-05 42.0 -0.0 13 2-14 247-259 (486)
94 cd00820 PEPCK_HprK Phosphoenol 73.1 1.1 2.5E-05 32.8 0.1 12 3-14 21-32 (107)
95 PF13604 AAA_30: AAA domain; P 72.8 1.1 2.3E-05 36.7 -0.2 12 3-14 24-35 (196)
96 cd01130 VirB11-like_ATPase Typ 72.7 1.1 2.5E-05 36.1 -0.1 12 3-14 31-42 (186)
97 cd01129 PulE-GspE PulE/GspE Th 72.6 1.2 2.5E-05 38.3 0.0 12 3-14 86-97 (264)
98 COG3842 PotA ABC-type spermidi 72.0 1.2 2.6E-05 39.8 -0.0 12 3-14 37-48 (352)
99 PF02562 PhoH: PhoH-like prote 71.6 1.3 2.9E-05 36.5 0.1 14 1-14 23-36 (205)
100 PRK09183 transposase/IS protei 71.5 1.4 3E-05 37.8 0.2 14 2-15 107-120 (259)
101 COG1222 RPT1 ATP-dependent 26S 71.3 3.3 7.1E-05 37.1 2.5 46 1-46 189-247 (406)
102 cd01120 RecA-like_NTPases RecA 71.2 1.3 2.9E-05 33.9 0.0 13 2-14 4-16 (165)
103 TIGR02881 spore_V_K stage V sp 71.1 1.4 3E-05 37.7 0.1 13 2-14 47-59 (261)
104 PRK14722 flhF flagellar biosyn 70.6 1.4 3E-05 39.9 0.0 12 3-14 143-154 (374)
105 COG1126 GlnQ ABC-type polar am 70.5 1.4 3.1E-05 36.7 0.0 12 3-14 34-45 (240)
106 COG0194 Gmk Guanylate kinase [ 70.2 10 0.00023 30.7 4.9 18 87-104 50-67 (191)
107 PRK14087 dnaA chromosomal repl 69.9 1.4 3.1E-05 40.9 -0.1 13 2-14 146-158 (450)
108 PF13191 AAA_16: AAA ATPase do 69.5 1.4 3.1E-05 34.8 -0.1 13 2-14 29-41 (185)
109 PRK08939 primosomal protein Dn 69.5 1.5 3.2E-05 38.6 -0.1 14 2-15 161-174 (306)
110 PRK12402 replication factor C 69.2 1.5 3.3E-05 38.6 -0.0 13 2-14 41-53 (337)
111 PRK13851 type IV secretion sys 69.1 1.5 3.2E-05 39.2 -0.1 12 3-14 168-179 (344)
112 PRK12422 chromosomal replicati 69.0 1.5 3.3E-05 40.6 -0.0 13 2-14 146-158 (445)
113 COG1484 DnaC DNA replication p 69.0 1.6 3.6E-05 37.2 0.1 13 2-14 110-122 (254)
114 PF03668 ATP_bind_2: P-loop AT 68.8 2.1 4.5E-05 37.1 0.7 34 3-36 7-45 (284)
115 PRK12723 flagellar biosynthesi 68.5 1.5 3.1E-05 40.0 -0.3 13 2-14 179-191 (388)
116 COG1223 Predicted ATPase (AAA+ 68.3 1.8 3.8E-05 37.2 0.1 43 2-44 156-211 (368)
117 TIGR03015 pepcterm_ATPase puta 68.2 1.6 3.5E-05 37.1 -0.1 12 3-14 49-60 (269)
118 cd02025 PanK Pantothenate kina 68.1 1.6 3.6E-05 36.3 -0.1 11 4-14 6-16 (220)
119 PRK13833 conjugal transfer pro 68.1 1.7 3.6E-05 38.6 -0.0 12 3-14 150-161 (323)
120 KOG1803 DNA helicase [Replicat 67.9 2 4.4E-05 40.8 0.5 20 161-180 474-493 (649)
121 PF13238 AAA_18: AAA domain; P 67.9 1.6 3.5E-05 32.2 -0.1 12 3-14 4-15 (129)
122 PRK11545 gntK gluconate kinase 67.1 1.8 3.8E-05 34.2 -0.1 12 3-14 1-12 (163)
123 PF13173 AAA_14: AAA domain 66.7 1.9 4E-05 32.4 -0.0 13 2-14 7-19 (128)
124 COG1118 CysA ABC-type sulfate/ 66.4 1.9 4.2E-05 37.7 0.1 12 3-14 34-45 (345)
125 PRK14086 dnaA chromosomal repl 66.4 1.9 4.1E-05 41.5 -0.0 13 2-14 319-331 (617)
126 cd02023 UMPK Uridine monophosp 66.3 1.9 4.1E-05 35.0 -0.0 12 3-14 5-16 (198)
127 COG3839 MalK ABC-type sugar tr 66.3 1.9 4.1E-05 38.4 -0.0 12 3-14 35-46 (338)
128 PRK07952 DNA replication prote 65.9 1.9 4.2E-05 36.6 -0.1 13 2-14 104-116 (244)
129 PF07724 AAA_2: AAA domain (Cd 65.6 2.1 4.5E-05 34.2 0.1 13 2-14 8-20 (171)
130 TIGR02782 TrbB_P P-type conjug 65.6 2 4.3E-05 37.6 -0.0 12 3-14 138-149 (299)
131 PF07728 AAA_5: AAA domain (dy 65.4 2 4.3E-05 32.6 -0.1 13 2-14 4-16 (139)
132 PRK00411 cdc6 cell division co 65.0 2.1 4.5E-05 38.7 -0.0 13 2-14 60-72 (394)
133 TIGR00554 panK_bact pantothena 64.8 5.9 0.00013 34.6 2.7 12 3-14 68-79 (290)
134 PF13476 AAA_23: AAA domain; P 64.6 2 4.4E-05 34.3 -0.1 13 2-14 24-36 (202)
135 COG0606 Predicted ATPase with 64.5 1.7 3.8E-05 40.2 -0.6 14 1-14 202-215 (490)
136 PTZ00301 uridine kinase; Provi 64.3 2.3 5E-05 35.2 0.1 11 4-14 10-20 (210)
137 PLN03025 replication factor C 64.2 2.2 4.8E-05 37.6 -0.0 12 3-14 40-51 (319)
138 TIGR01618 phage_P_loop phage n 64.2 2.2 4.7E-05 35.7 -0.1 13 2-14 17-29 (220)
139 COG1419 FlhF Flagellar GTP-bin 64.0 2.3 4.9E-05 38.7 0.0 22 82-103 258-279 (407)
140 PF00485 PRK: Phosphoribulokin 64.0 2.3 4.9E-05 34.5 0.0 12 3-14 5-16 (194)
141 cd03274 ABC_SMC4_euk Eukaryoti 63.9 2.3 5E-05 35.2 0.1 12 3-14 31-42 (212)
142 PRK13900 type IV secretion sys 63.6 2.3 5E-05 37.8 -0.0 12 3-14 166-177 (332)
143 PF07693 KAP_NTPase: KAP famil 63.4 2.3 5.1E-05 37.2 -0.0 12 3-14 26-37 (325)
144 KOG1534 Putative transcription 63.3 2.7 5.8E-05 34.9 0.3 41 217-257 209-249 (273)
145 PRK10536 hypothetical protein; 63.1 2.3 5E-05 36.4 -0.1 14 1-14 78-91 (262)
146 COG5059 KIP1 Kinesin-like prot 62.9 1.5 3.1E-05 42.1 -1.5 80 102-206 486-565 (568)
147 PF00270 DEAD: DEAD/DEAH box h 62.8 2.4 5.2E-05 32.9 -0.0 13 2-14 19-31 (169)
148 PRK13894 conjugal transfer ATP 62.7 2.4 5.2E-05 37.5 -0.1 12 3-14 154-165 (319)
149 PF01637 Arch_ATPase: Archaeal 62.4 2.4 5.2E-05 34.7 -0.1 13 2-14 25-37 (234)
150 PF12774 AAA_6: Hydrolytic ATP 62.0 2.5 5.5E-05 35.5 -0.0 40 2-41 37-83 (231)
151 TIGR01242 26Sp45 26S proteasom 61.7 2.6 5.7E-05 37.9 -0.0 13 2-14 161-173 (364)
152 PF10236 DAP3: Mitochondrial r 61.7 2.7 5.8E-05 37.0 0.0 13 2-14 28-40 (309)
153 PF06414 Zeta_toxin: Zeta toxi 61.6 2.3 5E-05 34.6 -0.3 13 2-14 20-32 (199)
154 TIGR00635 ruvB Holliday juncti 61.3 2.7 5.8E-05 36.6 -0.1 13 2-14 35-47 (305)
155 PF05729 NACHT: NACHT domain 61.2 2.8 6.2E-05 32.3 0.1 13 2-14 5-17 (166)
156 cd01126 TraG_VirD4 The TraG/Tr 61.1 3.5 7.6E-05 37.3 0.7 14 1-14 3-16 (384)
157 smart00487 DEXDc DEAD-like hel 60.8 2.7 5.8E-05 33.1 -0.1 13 2-14 29-41 (201)
158 TIGR02322 phosphon_PhnN phosph 60.7 2.8 6E-05 33.3 -0.0 12 3-14 7-18 (179)
159 PRK08233 hypothetical protein; 60.6 3 6.5E-05 33.0 0.2 12 3-14 9-20 (182)
160 PRK06547 hypothetical protein; 60.6 3 6.5E-05 33.3 0.2 12 3-14 21-32 (172)
161 COG1219 ClpX ATP-dependent pro 60.3 3.2 6.9E-05 36.7 0.2 12 2-13 102-113 (408)
162 PRK00080 ruvB Holliday junctio 60.2 2.8 6E-05 37.1 -0.1 13 2-14 56-68 (328)
163 COG4962 CpaF Flp pilus assembl 59.8 2.9 6.2E-05 37.2 -0.1 41 50-102 254-294 (355)
164 PRK13764 ATPase; Provisional 59.6 3 6.4E-05 40.2 -0.0 13 2-14 262-274 (602)
165 TIGR00376 DNA helicase, putati 58.9 3.1 6.7E-05 40.5 -0.0 13 2-14 178-190 (637)
166 TIGR01313 therm_gnt_kin carboh 58.6 3.4 7.4E-05 32.2 0.1 13 2-14 3-15 (163)
167 PRK07261 topology modulation p 58.4 3.5 7.6E-05 32.8 0.2 13 2-14 5-17 (171)
168 PRK05480 uridine/cytidine kina 58.1 3.3 7.1E-05 33.9 -0.0 12 3-14 12-23 (209)
169 PRK06995 flhF flagellar biosyn 57.9 3.3 7.2E-05 38.8 -0.0 12 3-14 262-273 (484)
170 PF03215 Rad17: Rad17 cell cyc 57.8 3.3 7.2E-05 39.2 -0.0 13 2-14 50-62 (519)
171 PRK05703 flhF flagellar biosyn 57.7 3.4 7.4E-05 38.1 0.0 12 3-14 227-238 (424)
172 TIGR01359 UMP_CMP_kin_fam UMP- 57.6 3.3 7.2E-05 32.9 -0.1 13 2-14 4-16 (183)
173 cd03238 ABC_UvrA The excision 57.0 3.5 7.5E-05 33.1 -0.0 12 3-14 27-38 (176)
174 cd02021 GntK Gluconate kinase 56.7 3.7 8E-05 31.5 0.1 13 2-14 4-16 (150)
175 cd02019 NK Nucleoside/nucleoti 56.6 3.9 8.5E-05 27.1 0.2 12 3-14 5-16 (69)
176 TIGR02880 cbbX_cfxQ probable R 56.2 3.8 8.2E-05 35.6 0.1 12 3-14 64-75 (284)
177 PHA02544 44 clamp loader, smal 56.2 3.6 7.8E-05 36.0 -0.1 12 3-14 49-60 (316)
178 PRK10078 ribose 1,5-bisphospho 56.2 3.7 7.9E-05 33.0 -0.0 12 3-14 8-19 (186)
179 PHA00729 NTP-binding motif con 56.1 4 8.7E-05 34.2 0.2 13 2-14 22-34 (226)
180 CHL00181 cbbX CbbX; Provisiona 56.0 4 8.6E-05 35.5 0.2 12 3-14 65-76 (287)
181 KOG0727 26S proteasome regulat 55.9 8.8 0.00019 32.9 2.1 45 1-45 193-250 (408)
182 PRK08118 topology modulation p 55.7 4.1 8.9E-05 32.3 0.2 13 2-14 6-18 (167)
183 TIGR00235 udk uridine kinase. 55.7 3.8 8.1E-05 33.6 -0.1 12 3-14 12-23 (207)
184 PF03029 ATP_bind_1: Conserved 55.5 4 8.7E-05 34.5 0.1 12 3-14 2-13 (238)
185 PF04466 Terminase_3: Phage te 55.2 4 8.6E-05 37.2 0.0 14 1-14 6-19 (387)
186 TIGR03238 dnd_assoc_3 dnd syst 54.9 4 8.7E-05 38.1 -0.0 13 3-15 38-50 (504)
187 cd01127 TrwB Bacterial conjuga 54.9 3.7 8E-05 37.6 -0.3 14 1-14 46-59 (410)
188 PF01745 IPT: Isopentenyl tran 54.6 4.2 9E-05 33.9 0.0 12 3-14 7-18 (233)
189 KOG0651 26S proteasome regulat 54.5 8.9 0.00019 33.9 2.0 43 2-44 171-226 (388)
190 COG4148 ModC ABC-type molybdat 54.5 4.6 9.9E-05 35.1 0.3 12 3-14 30-41 (352)
191 PRK03992 proteasome-activating 54.2 4.6 9.9E-05 36.8 0.2 13 2-14 170-182 (389)
192 PRK05416 glmZ(sRNA)-inactivati 54.2 5.8 0.00013 34.6 0.9 12 3-14 12-23 (288)
193 TIGR03744 traC_PFL_4706 conjug 54.2 3.8 8.2E-05 41.6 -0.3 13 2-14 480-492 (893)
194 PTZ00112 origin recognition co 54.1 8.3 0.00018 39.0 2.0 13 2-14 786-798 (1164)
195 PF04665 Pox_A32: Poxvirus A32 53.7 4.4 9.5E-05 34.3 0.0 12 3-14 19-30 (241)
196 TIGR01241 FtsH_fam ATP-depende 53.4 4.4 9.5E-05 38.1 -0.0 13 2-14 93-105 (495)
197 PRK12726 flagellar biosynthesi 53.2 4.5 9.7E-05 36.8 0.0 12 3-14 212-223 (407)
198 COG0419 SbcC ATPase involved i 53.1 16 0.00034 37.3 3.8 12 3-14 31-42 (908)
199 PRK14721 flhF flagellar biosyn 53.0 4.5 9.7E-05 37.2 -0.0 12 3-14 197-208 (420)
200 PRK00300 gmk guanylate kinase; 53.0 4.5 9.7E-05 32.9 -0.0 12 3-14 11-22 (205)
201 KOG0086 GTPase Rab4, small G p 52.4 75 0.0016 25.0 6.6 61 161-244 56-125 (214)
202 cd00071 GMPK Guanosine monopho 52.3 4.6 0.0001 30.8 -0.0 12 3-14 5-16 (137)
203 PRK10416 signal recognition pa 52.2 4.6 0.0001 35.7 -0.1 12 3-14 120-131 (318)
204 COG1131 CcmA ABC-type multidru 52.1 4.7 0.0001 35.2 -0.1 12 3-14 37-48 (293)
205 PRK11889 flhF flagellar biosyn 52.0 4.6 0.0001 37.0 -0.1 12 3-14 247-258 (436)
206 PTZ00454 26S protease regulato 52.0 4.8 0.0001 36.8 -0.0 13 2-14 184-196 (398)
207 cd03240 ABC_Rad50 The catalyti 52.0 4.8 0.0001 33.0 0.0 12 3-14 28-39 (204)
208 PF10412 TrwB_AAD_bind: Type I 51.9 6.8 0.00015 35.6 1.0 13 2-14 20-32 (386)
209 PTZ00361 26 proteosome regulat 51.8 4.7 0.0001 37.3 -0.0 13 2-14 222-234 (438)
210 KOG1533 Predicted GTPase [Gene 51.5 12 0.00026 31.7 2.3 26 2-42 7-32 (290)
211 PRK06217 hypothetical protein; 51.5 5.2 0.00011 32.0 0.2 12 3-14 7-18 (183)
212 PRK00440 rfc replication facto 51.2 4.9 0.00011 35.0 -0.0 13 2-14 43-55 (319)
213 cd03278 ABC_SMC_barmotin Barmo 51.0 5 0.00011 32.7 -0.0 12 3-14 28-39 (197)
214 COG0283 Cmk Cytidylate kinase 50.8 10 0.00022 31.6 1.7 30 4-36 11-46 (222)
215 TIGR03263 guanyl_kin guanylate 50.7 5.1 0.00011 31.8 -0.0 12 3-14 7-18 (180)
216 KOG2035 Replication factor C, 50.7 9.3 0.0002 33.2 1.5 14 1-14 38-51 (351)
217 TIGR02788 VirB11 P-type DNA tr 50.5 5.1 0.00011 35.2 -0.0 12 3-14 150-161 (308)
218 cd03279 ABC_sbcCD SbcCD and ot 50.1 5.4 0.00012 32.8 0.0 12 3-14 34-45 (213)
219 TIGR00176 mobB molybdopterin-g 50.0 5.3 0.00011 31.3 -0.0 12 3-14 5-16 (155)
220 KOG0739 AAA+-type ATPase [Post 49.5 5.7 0.00012 34.9 0.1 46 1-46 170-228 (439)
221 COG2607 Predicted ATPase (AAA+ 49.3 7.9 0.00017 32.9 0.9 13 2-14 90-102 (287)
222 PRK00131 aroK shikimate kinase 49.2 6.1 0.00013 30.8 0.2 13 2-14 9-21 (175)
223 COG1485 Predicted ATPase [Gene 49.1 8.6 0.00019 34.4 1.1 75 3-97 71-148 (367)
224 TIGR01360 aden_kin_iso1 adenyl 49.1 5.7 0.00012 31.6 0.0 13 2-14 8-20 (188)
225 PRK14723 flhF flagellar biosyn 49.0 5.8 0.00012 39.3 0.0 12 3-14 191-202 (767)
226 KOG0729 26S proteasome regulat 48.7 6.7 0.00014 33.9 0.4 42 1-42 215-269 (435)
227 TIGR01166 cbiO cobalt transpor 48.6 5.7 0.00012 31.9 -0.0 12 3-14 24-35 (190)
228 PF00005 ABC_tran: ABC transpo 48.6 5.5 0.00012 29.9 -0.1 12 3-14 17-28 (137)
229 COG1122 CbiO ABC-type cobalt t 48.6 5.7 0.00012 33.5 -0.0 13 2-14 35-47 (235)
230 COG1763 MobB Molybdopterin-gua 48.6 12 0.00027 29.5 1.9 52 3-75 8-59 (161)
231 TIGR02688 conserved hypothetic 48.5 6 0.00013 36.4 0.1 38 3-41 215-252 (449)
232 PF02534 T4SS-DNA_transf: Type 48.2 6.7 0.00014 36.5 0.3 14 1-14 48-61 (469)
233 TIGR02746 TraC-F-type type-IV 48.2 5.4 0.00012 39.8 -0.3 13 2-14 435-447 (797)
234 TIGR03265 PhnT2 putative 2-ami 48.1 5.9 0.00013 35.6 -0.1 12 3-14 36-47 (353)
235 TIGR00064 ftsY signal recognit 48.1 5.8 0.00013 34.2 -0.1 12 3-14 78-89 (272)
236 COG0563 Adk Adenylate kinase a 48.0 6.7 0.00014 31.6 0.3 12 3-14 6-17 (178)
237 cd03273 ABC_SMC2_euk Eukaryoti 47.9 6.1 0.00013 33.4 -0.0 12 3-14 31-42 (251)
238 PRK15483 type III restriction- 47.9 13 0.00028 37.9 2.3 10 5-14 67-76 (986)
239 cd02028 UMPK_like Uridine mono 47.9 6.4 0.00014 31.5 0.1 12 3-14 5-16 (179)
240 cd03226 ABC_cobalt_CbiO_domain 47.7 6 0.00013 32.2 -0.0 12 3-14 32-43 (205)
241 PRK14531 adenylate kinase; Pro 47.6 6 0.00013 31.7 -0.1 13 2-14 7-19 (183)
242 cd03225 ABC_cobalt_CbiO_domain 47.6 6.1 0.00013 32.3 -0.0 12 3-14 33-44 (211)
243 TIGR02237 recomb_radB DNA repa 47.5 7 0.00015 31.9 0.3 12 3-14 18-29 (209)
244 cd00880 Era_like Era (E. coli 47.5 6.1 0.00013 29.5 -0.0 12 3-14 2-13 (163)
245 cd03264 ABC_drug_resistance_li 47.2 6.2 0.00013 32.3 -0.1 12 3-14 31-42 (211)
246 cd03293 ABC_NrtD_SsuB_transpor 47.0 6.3 0.00014 32.5 -0.0 12 3-14 36-47 (220)
247 PF13481 AAA_25: AAA domain; P 47.0 6.1 0.00013 31.6 -0.1 13 2-14 37-49 (193)
248 TIGR03689 pup_AAA proteasome A 46.8 6.5 0.00014 37.2 0.0 13 2-14 221-233 (512)
249 cd01428 ADK Adenylate kinase ( 46.8 6.3 0.00014 31.5 -0.1 13 2-14 4-16 (194)
250 PF12775 AAA_7: P-loop contain 46.8 6.4 0.00014 34.0 -0.0 13 2-14 38-50 (272)
251 TIGR00960 3a0501s02 Type II (G 46.8 6.4 0.00014 32.3 -0.0 12 3-14 35-46 (216)
252 TIGR02673 FtsE cell division A 46.7 6.4 0.00014 32.2 -0.0 12 3-14 34-45 (214)
253 PF05496 RuvB_N: Holliday junc 46.7 6.9 0.00015 32.8 0.2 13 2-14 55-67 (233)
254 PRK09825 idnK D-gluconate kina 46.7 6.4 0.00014 31.5 -0.0 12 3-14 9-20 (176)
255 PRK09270 nucleoside triphospha 46.7 6.4 0.00014 32.8 -0.0 12 3-14 39-50 (229)
256 PRK06762 hypothetical protein; 46.7 6.9 0.00015 30.6 0.2 12 3-14 8-19 (166)
257 COG4181 Predicted ABC-type tra 46.6 6.8 0.00015 31.7 0.1 12 3-14 42-53 (228)
258 KOG0743 AAA+-type ATPase [Post 46.6 7.4 0.00016 35.8 0.3 14 1-14 239-252 (457)
259 cd03272 ABC_SMC3_euk Eukaryoti 46.5 6.7 0.00014 32.8 0.0 12 3-14 29-40 (243)
260 PRK13873 conjugal transfer ATP 46.4 6 0.00013 39.7 -0.3 13 2-14 446-458 (811)
261 TIGR02173 cyt_kin_arch cytidyl 46.4 6.8 0.00015 30.5 0.1 12 3-14 6-17 (171)
262 cd03255 ABC_MJ0796_Lo1CDE_FtsE 46.3 6.5 0.00014 32.3 -0.1 12 3-14 36-47 (218)
263 CHL00195 ycf46 Ycf46; Provisio 46.2 6.9 0.00015 36.8 0.1 13 2-14 264-276 (489)
264 cd02024 NRK1 Nicotinamide ribo 45.7 7.3 0.00016 31.6 0.2 11 4-14 6-16 (187)
265 cd03222 ABC_RNaseL_inhibitor T 45.7 6.2 0.00013 31.7 -0.3 12 3-14 31-42 (177)
266 PRK15177 Vi polysaccharide exp 45.7 6.8 0.00015 32.3 -0.0 12 3-14 19-30 (213)
267 PRK06696 uridine kinase; Valid 45.6 7.4 0.00016 32.3 0.2 12 3-14 28-39 (223)
268 KOG0652 26S proteasome regulat 45.6 7.6 0.00016 33.4 0.2 34 84-117 310-345 (424)
269 cd03258 ABC_MetN_methionine_tr 45.5 6.8 0.00015 32.6 -0.0 12 3-14 37-48 (233)
270 cd01983 Fer4_NifH The Fer4_Nif 45.5 7.3 0.00016 26.6 0.1 12 3-14 5-16 (99)
271 PRK07667 uridine kinase; Provi 45.5 7.4 0.00016 31.5 0.2 12 3-14 23-34 (193)
272 cd01124 KaiC KaiC is a circadi 45.4 7.8 0.00017 30.7 0.3 13 2-14 4-16 (187)
273 PF02702 KdpD: Osmosensitive K 45.4 21 0.00047 29.4 2.8 15 91-105 104-118 (211)
274 TIGR03608 L_ocin_972_ABC putat 45.3 6.9 0.00015 31.8 -0.0 12 3-14 30-41 (206)
275 PRK10875 recD exonuclease V su 45.1 20 0.00042 34.9 3.0 12 3-14 173-184 (615)
276 cd03265 ABC_DrrA DrrA is the A 45.0 7 0.00015 32.2 -0.0 12 3-14 32-43 (220)
277 PRK14729 miaA tRNA delta(2)-is 44.8 8 0.00017 33.9 0.3 12 3-14 10-21 (300)
278 cd03263 ABC_subfamily_A The AB 44.8 7.1 0.00015 32.1 -0.0 12 3-14 34-45 (220)
279 COG1127 Ttg2A ABC-type transpo 44.7 7.1 0.00015 33.1 -0.1 12 3-14 40-51 (263)
280 KOG3859 Septins (P-loop GTPase 44.7 18 0.00038 31.5 2.3 50 1-53 46-102 (406)
281 cd03256 ABC_PhnC_transporter A 44.6 7.2 0.00016 32.5 -0.0 12 3-14 33-44 (241)
282 cd03261 ABC_Org_Solvent_Resist 44.6 7.2 0.00016 32.5 -0.0 12 3-14 32-43 (235)
283 TIGR00231 small_GTP small GTP- 44.5 7.2 0.00016 29.1 -0.0 13 2-14 6-18 (161)
284 TIGR01188 drrA daunorubicin re 44.5 7.2 0.00016 34.0 -0.0 12 3-14 25-36 (302)
285 PRK09452 potA putrescine/sperm 44.4 7.2 0.00016 35.4 -0.1 12 3-14 46-57 (375)
286 cd03259 ABC_Carb_Solutes_like 44.4 7.3 0.00016 31.9 -0.0 12 3-14 32-43 (213)
287 TIGR01547 phage_term_2 phage t 44.4 7 0.00015 35.5 -0.2 14 1-14 5-18 (396)
288 KOG0726 26S proteasome regulat 44.2 18 0.00039 31.8 2.3 61 1-61 223-297 (440)
289 cd03292 ABC_FtsE_transporter F 44.2 7.4 0.00016 31.8 -0.0 12 3-14 33-44 (214)
290 PRK00771 signal recognition pa 44.2 7.5 0.00016 36.0 0.0 13 2-14 100-112 (437)
291 TIGR00631 uvrb excinuclease AB 44.1 9.5 0.00021 37.3 0.7 57 2-58 34-97 (655)
292 PRK12724 flagellar biosynthesi 44.0 7.5 0.00016 35.8 -0.0 13 2-14 228-240 (432)
293 cd03219 ABC_Mj1267_LivG_branch 44.0 7.5 0.00016 32.4 -0.0 12 3-14 32-43 (236)
294 cd03269 ABC_putative_ATPase Th 44.0 7.5 0.00016 31.7 -0.0 12 3-14 32-43 (210)
295 PF04548 AIG1: AIG1 family; I 43.9 7.5 0.00016 32.0 -0.0 13 2-14 5-17 (212)
296 PF01443 Viral_helicase1: Vira 43.9 7.5 0.00016 32.1 -0.1 12 3-14 4-15 (234)
297 PRK11629 lolD lipoprotein tran 43.9 7.5 0.00016 32.4 -0.0 12 3-14 41-52 (233)
298 cd03235 ABC_Metallic_Cations A 43.9 7.5 0.00016 31.8 -0.1 12 3-14 31-42 (213)
299 cd00464 SK Shikimate kinase (S 43.8 7.4 0.00016 29.7 -0.1 13 2-14 4-16 (154)
300 PRK14974 cell division protein 43.7 7.7 0.00017 34.6 0.0 12 3-14 146-157 (336)
301 cd03229 ABC_Class3 This class 43.7 7.6 0.00016 30.9 -0.0 12 3-14 32-43 (178)
302 PRK11650 ugpC glycerol-3-phosp 43.6 7.5 0.00016 34.9 -0.1 12 3-14 36-47 (356)
303 PF00406 ADK: Adenylate kinase 43.6 8 0.00017 29.8 0.1 12 3-14 2-13 (151)
304 cd03262 ABC_HisP_GlnQ_permease 43.3 7.7 0.00017 31.7 -0.0 12 3-14 32-43 (213)
305 COG0572 Udk Uridine kinase [Nu 43.3 8.4 0.00018 32.1 0.2 11 4-14 15-25 (218)
306 PRK04195 replication factor C 43.3 7.7 0.00017 36.4 -0.1 13 2-14 44-56 (482)
307 cd03245 ABCC_bacteriocin_expor 43.2 7.8 0.00017 31.9 -0.1 12 3-14 36-47 (220)
308 PRK11607 potG putrescine trans 43.1 7.8 0.00017 35.1 -0.1 12 3-14 51-62 (377)
309 TIGR03258 PhnT 2-aminoethylpho 43.0 7.8 0.00017 34.9 -0.1 12 3-14 37-48 (362)
310 PRK14532 adenylate kinase; Pro 42.9 7.9 0.00017 31.0 -0.0 13 2-14 5-17 (188)
311 PRK13891 conjugal transfer pro 42.9 7.3 0.00016 39.3 -0.3 13 2-14 493-505 (852)
312 PF08477 Miro: Miro-like prote 42.8 7.9 0.00017 28.0 -0.0 13 2-14 4-16 (119)
313 PRK10751 molybdopterin-guanine 42.7 7.4 0.00016 31.2 -0.2 12 3-14 12-23 (173)
314 cd03218 ABC_YhbG The ABC trans 42.6 8.1 0.00018 32.1 -0.0 12 3-14 32-43 (232)
315 cd02020 CMPK Cytidine monophos 42.6 8.9 0.00019 28.9 0.2 12 3-14 5-16 (147)
316 cd03260 ABC_PstB_phosphate_tra 42.6 8.1 0.00017 32.0 -0.0 12 3-14 32-43 (227)
317 PF01926 MMR_HSR1: 50S ribosom 42.6 7.8 0.00017 28.2 -0.1 12 3-14 5-16 (116)
318 PRK13537 nodulation ABC transp 42.6 8.1 0.00018 33.9 -0.0 12 3-14 39-50 (306)
319 cd03224 ABC_TM1139_LivF_branch 42.5 8.1 0.00018 31.8 -0.0 12 3-14 32-43 (222)
320 cd03214 ABC_Iron-Siderophores_ 42.5 8.1 0.00018 30.8 -0.0 12 3-14 31-42 (180)
321 COG0444 DppD ABC-type dipeptid 42.4 8.4 0.00018 33.9 0.0 12 3-14 37-48 (316)
322 KOG0055 Multidrug/pheromone ex 42.3 8.8 0.00019 39.8 0.2 12 3-14 1022-1033(1228)
323 PF02463 SMC_N: RecF/RecN/SMC 42.3 9 0.00019 31.5 0.2 12 3-14 30-41 (220)
324 PRK03839 putative kinase; Prov 42.3 8.8 0.00019 30.5 0.1 12 3-14 6-17 (180)
325 COG1124 DppF ABC-type dipeptid 42.2 9.1 0.0002 32.4 0.2 12 3-14 39-50 (252)
326 cd03276 ABC_SMC6_euk Eukaryoti 42.2 8.3 0.00018 31.4 -0.0 14 3-16 27-40 (198)
327 PRK10876 recB exonuclease V su 42.0 8.7 0.00019 40.3 0.1 10 5-14 25-34 (1181)
328 cd03296 ABC_CysA_sulfate_impor 42.0 8.4 0.00018 32.2 -0.0 12 3-14 34-45 (239)
329 PRK13341 recombination factor 42.0 8.5 0.00018 38.1 -0.0 13 2-14 57-69 (725)
330 PF05872 DUF853: Bacterial pro 41.9 10 0.00022 35.2 0.4 33 89-121 143-175 (502)
331 cd03221 ABCF_EF-3 ABCF_EF-3 E 41.9 8.4 0.00018 29.6 -0.0 12 3-14 32-43 (144)
332 COG1137 YhbG ABC-type (unclass 41.9 11 0.00024 31.2 0.6 12 3-14 36-47 (243)
333 PRK13342 recombination factor 41.9 8.4 0.00018 35.3 -0.0 12 3-14 42-53 (413)
334 cd01123 Rad51_DMC1_radA Rad51_ 41.8 9.2 0.0002 31.7 0.2 12 3-14 25-36 (235)
335 cd04163 Era Era subfamily. Er 41.8 8.5 0.00018 29.2 -0.0 12 3-14 9-20 (168)
336 PLN02796 D-glycerate 3-kinase 41.8 8.3 0.00018 34.5 -0.1 11 4-14 107-117 (347)
337 PRK13539 cytochrome c biogenes 41.7 8.5 0.00018 31.4 -0.0 12 3-14 34-45 (207)
338 TIGR02211 LolD_lipo_ex lipopro 41.7 8.5 0.00018 31.6 -0.0 12 3-14 37-48 (221)
339 cd00227 CPT Chloramphenicol (C 41.6 9.2 0.0002 30.3 0.1 13 2-14 7-19 (175)
340 PRK13538 cytochrome c biogenes 41.6 8.5 0.00018 31.3 -0.1 12 3-14 33-44 (204)
341 cd03242 ABC_RecF RecF is a rec 41.5 8.7 0.00019 32.9 -0.0 12 3-14 27-38 (270)
342 cd02027 APSK Adenosine 5'-phos 41.5 9.3 0.0002 29.5 0.1 13 2-14 4-16 (149)
343 TIGR01288 nodI ATP-binding ABC 41.5 8.6 0.00019 33.6 -0.0 12 3-14 36-47 (303)
344 TIGR02315 ABC_phnC phosphonate 41.4 8.6 0.00019 32.1 -0.0 12 3-14 34-45 (243)
345 COG4555 NatA ABC-type Na+ tran 41.4 10 0.00022 31.5 0.4 12 3-14 34-45 (245)
346 PRK04040 adenylate kinase; Pro 41.4 9.3 0.0002 30.9 0.1 13 2-14 7-19 (188)
347 TIGR01447 recD exodeoxyribonuc 41.3 8.6 0.00019 37.1 -0.1 12 3-14 166-177 (586)
348 KOG0953 Mitochondrial RNA heli 41.3 9.6 0.00021 36.2 0.2 41 1-41 195-237 (700)
349 TIGR03864 PQQ_ABC_ATP ABC tran 41.2 8.8 0.00019 32.0 -0.0 12 3-14 33-44 (236)
350 PRK11432 fbpC ferric transport 41.1 8.7 0.00019 34.5 -0.1 12 3-14 38-49 (351)
351 PRK14242 phosphate transporter 41.1 8.8 0.00019 32.4 -0.0 12 3-14 38-49 (253)
352 cd03301 ABC_MalK_N The N-termi 41.1 8.8 0.00019 31.4 -0.0 12 3-14 32-43 (213)
353 cd03297 ABC_ModC_molybdenum_tr 41.0 8.8 0.00019 31.4 -0.1 12 3-14 29-40 (214)
354 cd03257 ABC_NikE_OppD_transpor 40.9 8.9 0.00019 31.6 -0.1 12 3-14 37-48 (228)
355 cd03115 SRP The signal recogni 40.8 9 0.0002 30.2 -0.0 12 3-14 6-17 (173)
356 PF13304 AAA_21: AAA domain; P 40.8 9.1 0.0002 31.3 0.0 12 3-14 5-16 (303)
357 TIGR00929 VirB4_CagE type IV s 40.8 8.2 0.00018 38.4 -0.3 13 2-14 439-451 (785)
358 TIGR03410 urea_trans_UrtE urea 40.7 9 0.00019 31.8 -0.0 12 3-14 32-43 (230)
359 cd03246 ABCC_Protease_Secretio 40.6 9 0.0002 30.3 -0.0 12 3-14 34-45 (173)
360 COG4136 ABC-type uncharacteriz 40.5 9.4 0.0002 30.2 0.0 12 3-14 34-45 (213)
361 cd03216 ABC_Carb_Monos_I This 40.3 9.2 0.0002 30.0 -0.0 12 3-14 32-43 (163)
362 PRK10584 putative ABC transpor 40.2 9.3 0.0002 31.6 -0.0 12 3-14 42-53 (228)
363 PRK14527 adenylate kinase; Pro 40.0 9.3 0.0002 30.8 -0.1 13 2-14 11-23 (191)
364 TIGR02759 TraD_Ftype type IV c 40.0 8.6 0.00019 36.9 -0.3 14 1-14 180-193 (566)
365 PRK10851 sulfate/thiosulfate t 40.0 9.4 0.0002 34.3 -0.0 12 3-14 34-45 (353)
366 cd03270 ABC_UvrA_I The excisio 40.0 9.2 0.0002 31.8 -0.1 12 3-14 27-38 (226)
367 cd03275 ABC_SMC1_euk Eukaryoti 39.9 9.6 0.00021 32.1 0.0 12 3-14 28-39 (247)
368 cd03268 ABC_BcrA_bacitracin_re 39.7 9.5 0.00021 31.1 -0.0 12 3-14 32-43 (208)
369 cd03230 ABC_DR_subfamily_A Thi 39.7 9.5 0.00021 30.1 -0.0 12 3-14 32-43 (173)
370 PRK13721 conjugal transfer ATP 39.7 8.8 0.00019 38.7 -0.3 13 2-14 454-466 (844)
371 TIGR01978 sufC FeS assembly AT 39.7 9.7 0.00021 31.8 -0.0 12 3-14 32-43 (243)
372 cd03223 ABCD_peroxisomal_ALDP 39.7 9.5 0.00021 30.0 -0.0 12 3-14 33-44 (166)
373 PRK13853 type IV secretion sys 39.6 8.8 0.00019 38.4 -0.3 13 2-14 431-443 (789)
374 PRK14530 adenylate kinase; Pro 39.6 10 0.00022 31.2 0.2 13 2-14 8-20 (215)
375 TIGR00101 ureG urease accessor 39.6 9.5 0.00021 31.2 -0.1 12 3-14 7-18 (199)
376 COG3840 ThiQ ABC-type thiamine 39.5 9.9 0.00021 31.0 0.0 12 3-14 31-42 (231)
377 COG4240 Predicted kinase [Gene 39.4 11 0.00024 31.8 0.3 12 3-14 56-67 (300)
378 PRK11248 tauB taurine transpor 39.4 9.7 0.00021 32.3 -0.1 12 3-14 33-44 (255)
379 PRK05541 adenylylsulfate kinas 39.4 10 0.00023 29.9 0.1 12 3-14 13-24 (176)
380 cd03298 ABC_ThiQ_thiamine_tran 39.4 9.7 0.00021 31.1 -0.1 12 3-14 30-41 (211)
381 PRK13646 cbiO cobalt transport 39.4 9.7 0.00021 32.9 -0.1 12 3-14 39-50 (286)
382 KOG2878 Predicted kinase [Gene 39.3 13 0.00027 30.8 0.6 12 4-15 38-49 (282)
383 COG2884 FtsE Predicted ATPase 39.3 9.8 0.00021 31.2 -0.0 12 3-14 34-45 (223)
384 TIGR01189 ccmA heme ABC export 39.2 9.8 0.00021 30.8 -0.0 12 3-14 32-43 (198)
385 PRK12727 flagellar biosynthesi 39.2 9.9 0.00022 36.1 -0.0 12 3-14 356-367 (559)
386 PRK14738 gmk guanylate kinase; 39.2 9.7 0.00021 31.2 -0.1 12 3-14 19-30 (206)
387 TIGR01243 CDC48 AAA family ATP 39.1 10 0.00023 37.5 0.1 13 2-14 217-229 (733)
388 PF08423 Rad51: Rad51; InterP 39.1 11 0.00023 32.2 0.2 22 82-103 104-125 (256)
389 PRK11124 artP arginine transpo 39.1 9.9 0.00021 31.8 -0.0 12 3-14 34-45 (242)
390 PF05970 PIF1: PIF1-like helic 39.0 11 0.00023 34.0 0.2 13 2-14 27-39 (364)
391 PRK14961 DNA polymerase III su 39.0 9.9 0.00021 34.2 -0.1 13 2-14 43-55 (363)
392 PRK11144 modC molybdate transp 39.0 9.9 0.00022 34.0 -0.0 12 3-14 30-41 (352)
393 cd03254 ABCC_Glucan_exporter_l 38.8 10 0.00022 31.4 -0.0 12 3-14 35-46 (229)
394 PRK10895 lipopolysaccharide AB 38.7 10 0.00022 31.7 -0.0 12 3-14 35-46 (241)
395 TIGR00972 3a0107s01c2 phosphat 38.6 10 0.00022 31.9 -0.1 12 3-14 33-44 (247)
396 TIGR01351 adk adenylate kinase 38.6 10 0.00022 31.1 -0.1 13 2-14 4-16 (210)
397 PRK13645 cbiO cobalt transport 38.4 10 0.00022 32.8 -0.1 12 3-14 43-54 (289)
398 TIGR00348 hsdR type I site-spe 38.4 11 0.00024 37.0 0.1 11 5-15 271-281 (667)
399 TIGR00073 hypB hydrogenase acc 38.3 10 0.00022 31.0 -0.0 12 3-14 28-39 (207)
400 cd03215 ABC_Carb_Monos_II This 38.3 10 0.00022 30.2 -0.0 12 3-14 32-43 (182)
401 TIGR02858 spore_III_AA stage I 38.2 10 0.00022 32.7 -0.1 12 3-14 117-128 (270)
402 PHA01747 putative ATP-dependen 38.2 12 0.00027 33.8 0.4 12 3-14 196-207 (425)
403 TIGR01184 ntrCD nitrate transp 38.2 10 0.00023 31.5 -0.0 12 3-14 17-28 (230)
404 PRK11022 dppD dipeptide transp 38.2 10 0.00022 33.7 -0.2 12 3-14 39-50 (326)
405 cd03252 ABCC_Hemolysin The ABC 38.1 10 0.00022 31.5 -0.1 12 3-14 34-45 (237)
406 KOG0745 Putative ATP-dependent 38.1 11 0.00024 34.8 0.1 12 2-13 231-242 (564)
407 cd03290 ABCC_SUR1_N The SUR do 38.1 10 0.00023 31.1 -0.1 12 3-14 33-44 (218)
408 cd03283 ABC_MutS-like MutS-lik 38.1 11 0.00023 30.8 0.0 12 3-14 31-42 (199)
409 cd01394 radB RadB. The archaea 38.1 12 0.00025 30.8 0.2 13 2-14 24-36 (218)
410 PRK09493 glnQ glutamine ABC tr 38.0 10 0.00023 31.6 -0.0 12 3-14 33-44 (240)
411 PRK11331 5-methylcytosine-spec 38.0 11 0.00024 35.0 0.1 13 2-14 199-211 (459)
412 PRK13541 cytochrome c biogenes 38.0 11 0.00023 30.5 -0.0 12 3-14 32-43 (195)
413 PRK14250 phosphate ABC transpo 37.9 11 0.00023 31.7 -0.0 12 3-14 35-46 (241)
414 cd03266 ABC_NatA_sodium_export 37.9 11 0.00023 31.0 -0.0 12 3-14 37-48 (218)
415 cd03237 ABC_RNaseL_inhibitor_d 37.9 11 0.00023 32.0 -0.0 12 3-14 31-42 (246)
416 cd03295 ABC_OpuCA_Osmoprotecti 37.8 11 0.00023 31.6 -0.0 12 3-14 33-44 (242)
417 TIGR01187 potA spermidine/putr 37.8 11 0.00023 33.4 -0.0 12 3-14 2-13 (325)
418 COG1102 Cmk Cytidylate kinase 37.8 13 0.00029 29.6 0.5 11 4-14 7-17 (179)
419 TIGR01186 proV glycine betaine 37.8 10 0.00022 34.2 -0.2 12 3-14 25-36 (363)
420 PRK01184 hypothetical protein; 37.7 12 0.00025 29.9 0.2 12 3-14 7-18 (184)
421 PRK14240 phosphate transporter 37.7 11 0.00023 31.8 -0.0 12 3-14 35-46 (250)
422 PRK04296 thymidine kinase; Pro 37.7 9.7 0.00021 30.8 -0.3 13 2-14 7-19 (190)
423 PRK13536 nodulation factor exp 37.6 11 0.00023 33.7 -0.0 12 3-14 73-84 (340)
424 COG1116 TauB ABC-type nitrate/ 37.6 11 0.00023 32.1 -0.1 12 3-14 35-46 (248)
425 TIGR02640 gas_vesic_GvpN gas v 37.6 12 0.00025 32.0 0.2 12 3-14 27-38 (262)
426 cd03249 ABC_MTABC3_MDL1_MDL2 M 37.5 11 0.00023 31.5 -0.1 12 3-14 35-46 (238)
427 PRK05342 clpX ATP-dependent pr 37.5 12 0.00025 34.5 0.1 13 2-14 113-125 (412)
428 TIGR00595 priA primosomal prot 37.4 13 0.00028 35.2 0.4 14 1-14 1-14 (505)
429 TIGR03522 GldA_ABC_ATP gliding 37.3 11 0.00024 32.9 -0.0 12 3-14 34-45 (301)
430 PRK13909 putative recombinatio 37.3 11 0.00025 38.3 0.1 10 5-14 6-15 (910)
431 PRK11701 phnK phosphonate C-P 37.3 11 0.00024 31.9 -0.1 12 3-14 38-49 (258)
432 PRK11000 maltose/maltodextrin 37.3 11 0.00023 34.1 -0.1 12 3-14 35-46 (369)
433 COG1119 ModF ABC-type molybden 37.2 11 0.00024 32.0 -0.0 12 3-14 63-74 (257)
434 cd03233 ABC_PDR_domain1 The pl 37.2 11 0.00024 30.7 -0.1 12 3-14 39-50 (202)
435 cd03250 ABCC_MRP_domain1 Domai 37.1 11 0.00024 30.6 -0.0 12 3-14 37-48 (204)
436 PTZ00424 helicase 45; Provisio 37.1 10 0.00022 34.3 -0.3 13 2-14 70-82 (401)
437 cd03228 ABCC_MRP_Like The MRP 37.1 11 0.00024 29.7 -0.0 12 3-14 34-45 (171)
438 PF05707 Zot: Zonular occluden 37.1 11 0.00024 30.5 -0.0 12 3-14 6-17 (193)
439 PRK13638 cbiO cobalt transport 37.0 11 0.00024 32.2 -0.0 12 3-14 33-44 (271)
440 COG0324 MiaA tRNA delta(2)-iso 37.0 13 0.00028 32.8 0.3 12 3-14 9-20 (308)
441 cd03271 ABC_UvrA_II The excisi 37.0 12 0.00025 32.2 0.1 12 3-14 27-38 (261)
442 PF03266 NTPase_1: NTPase; In 37.0 17 0.00037 28.8 1.0 12 3-14 5-16 (168)
443 PRK11264 putative amino-acid A 37.0 11 0.00024 31.6 -0.0 12 3-14 35-46 (250)
444 cd01918 HprK_C HprK/P, the bif 36.9 12 0.00025 29.3 0.1 12 3-14 20-31 (149)
445 PRK10247 putative ABC transpor 36.9 11 0.00024 31.2 -0.0 12 3-14 39-50 (225)
446 cd00882 Ras_like_GTPase Ras-li 36.8 11 0.00024 27.6 -0.1 12 3-14 2-13 (157)
447 PRK13651 cobalt transporter AT 36.8 11 0.00024 33.0 -0.1 12 3-14 39-50 (305)
448 PRK13540 cytochrome c biogenes 36.8 11 0.00024 30.5 -0.0 12 3-14 33-44 (200)
449 PRK09544 znuC high-affinity zi 36.7 11 0.00025 31.9 -0.0 12 3-14 36-47 (251)
450 TIGR00382 clpX endopeptidase C 36.7 12 0.00026 34.5 0.1 13 2-14 121-133 (413)
451 PRK13650 cbiO cobalt transport 36.7 11 0.00024 32.4 -0.1 12 3-14 39-50 (279)
452 PRK14261 phosphate ABC transpo 36.7 11 0.00024 31.7 -0.1 12 3-14 38-49 (253)
453 KOG1970 Checkpoint RAD17-RFC c 36.7 13 0.00028 35.3 0.3 12 3-14 116-127 (634)
454 TIGR02323 CP_lyasePhnK phospho 36.6 11 0.00025 31.7 -0.0 12 3-14 35-46 (253)
455 KOG2373 Predicted mitochondria 36.6 15 0.00032 33.1 0.6 12 3-14 279-290 (514)
456 TIGR00602 rad24 checkpoint pro 36.4 12 0.00025 36.5 -0.0 13 2-14 115-127 (637)
457 PRK14251 phosphate ABC transpo 36.4 12 0.00025 31.6 -0.0 12 3-14 36-47 (251)
458 cd03294 ABC_Pro_Gly_Bertaine T 36.4 12 0.00025 32.1 -0.0 12 3-14 56-67 (269)
459 PRK13648 cbiO cobalt transport 36.4 12 0.00025 32.1 -0.0 12 3-14 41-52 (269)
460 PRK11247 ssuB aliphatic sulfon 36.3 12 0.00025 32.0 -0.0 12 3-14 44-55 (257)
461 PRK14248 phosphate ABC transpo 36.3 12 0.00025 32.0 -0.1 12 3-14 53-64 (268)
462 cd03251 ABCC_MsbA MsbA is an e 36.3 12 0.00025 31.1 -0.1 12 3-14 34-45 (234)
463 cd00544 CobU Adenosylcobinamid 36.3 12 0.00026 29.8 0.0 13 2-14 4-16 (169)
464 PRK14245 phosphate ABC transpo 36.2 12 0.00025 31.6 -0.0 12 3-14 35-46 (250)
465 PRK03695 vitamin B12-transport 36.1 12 0.00025 31.6 -0.0 12 3-14 28-39 (248)
466 COG4586 ABC-type uncharacteriz 36.1 14 0.0003 32.1 0.4 29 3-31 56-90 (325)
467 PRK10744 pstB phosphate transp 36.1 12 0.00025 31.8 -0.1 12 3-14 45-56 (260)
468 PRK10908 cell division protein 36.1 12 0.00026 30.9 -0.0 12 3-14 34-45 (222)
469 COG1702 PhoH Phosphate starvat 36.0 14 0.0003 32.9 0.4 33 78-111 227-259 (348)
470 PRK02496 adk adenylate kinase; 36.0 13 0.00028 29.6 0.2 13 2-14 6-18 (184)
471 cd01393 recA_like RecA is a b 36.0 13 0.00028 30.6 0.2 23 82-104 85-107 (226)
472 COG1117 PstB ABC-type phosphat 36.0 12 0.00026 31.3 0.0 23 3-40 39-61 (253)
473 PRK14267 phosphate ABC transpo 36.0 12 0.00026 31.6 -0.1 12 3-14 36-47 (253)
474 cd03241 ABC_RecN RecN ATPase i 35.9 12 0.00026 32.2 0.0 12 3-14 27-38 (276)
475 PRK13880 conjugal transfer cou 35.8 14 0.0003 36.1 0.3 14 1-14 179-192 (636)
476 PRK13548 hmuV hemin importer A 35.8 12 0.00026 31.8 -0.0 12 3-14 34-45 (258)
477 cd03247 ABCC_cytochrome_bd The 35.8 12 0.00026 29.7 -0.0 12 3-14 34-45 (178)
478 PF06048 DUF927: Domain of unk 35.8 12 0.00026 32.5 -0.0 12 3-14 199-210 (286)
479 PF04670 Gtr1_RagA: Gtr1/RagA 35.8 13 0.00028 31.3 0.2 13 2-14 4-16 (232)
480 PLN02165 adenylate isopentenyl 35.7 13 0.00029 33.0 0.2 12 3-14 49-60 (334)
481 PRK14241 phosphate transporter 35.6 12 0.00026 31.7 -0.1 12 3-14 36-47 (258)
482 cd03239 ABC_SMC_head The struc 35.6 12 0.00027 29.9 0.0 12 3-14 28-39 (178)
483 COG4152 ABC-type uncharacteriz 35.5 15 0.00033 31.4 0.5 12 3-14 34-45 (300)
484 PF09439 SRPRB: Signal recogni 35.5 14 0.00029 29.9 0.2 12 3-14 9-20 (181)
485 PRK14269 phosphate ABC transpo 35.5 12 0.00026 31.4 -0.0 12 3-14 34-45 (246)
486 COG1074 RecB ATP-dependent exo 35.4 22 0.00048 37.2 1.8 10 5-14 24-33 (1139)
487 cd00267 ABC_ATPase ABC (ATP-bi 35.4 12 0.00027 28.9 -0.0 12 3-14 31-42 (157)
488 cd03232 ABC_PDR_domain2 The pl 35.4 12 0.00027 30.1 -0.0 12 3-14 39-50 (192)
489 PF03969 AFG1_ATPase: AFG1-lik 35.3 13 0.00029 33.5 0.2 12 3-14 68-79 (362)
490 PHA02530 pseT polynucleotide k 35.3 12 0.00026 32.4 -0.1 13 2-14 7-19 (300)
491 COG0630 VirB11 Type IV secreto 35.3 12 0.00026 32.9 -0.1 13 2-14 148-160 (312)
492 PRK13649 cbiO cobalt transport 35.3 12 0.00027 32.1 -0.0 12 3-14 39-50 (280)
493 cd02029 PRK_like Phosphoribulo 35.2 12 0.00027 32.3 -0.1 12 3-14 5-16 (277)
494 PRK11153 metN DL-methionine tr 35.2 12 0.00026 33.3 -0.1 12 3-14 37-48 (343)
495 PRK09361 radB DNA repair and r 35.2 14 0.00029 30.6 0.2 13 2-14 28-40 (225)
496 TIGR02770 nickel_nikD nickel i 35.2 12 0.00027 31.0 -0.0 12 3-14 18-29 (230)
497 TIGR02769 nickel_nikE nickel i 35.2 12 0.00027 31.8 -0.0 12 3-14 43-54 (265)
498 CHL00131 ycf16 sulfate ABC tra 35.2 12 0.00027 31.4 -0.0 12 3-14 39-50 (252)
499 TIGR00017 cmk cytidylate kinas 35.2 12 0.00027 31.0 -0.1 34 3-36 8-44 (217)
500 PHA02244 ATPase-like protein 35.2 14 0.00029 33.6 0.2 12 3-14 125-136 (383)
No 1
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.3e-69 Score=492.94 Aligned_cols=244 Identities=48% Similarity=0.668 Sum_probs=226.9
Q ss_pred CcccCCccCccccccccCCCCCCCcChHHHHHHHHHHhcccCC----CeEEEEEEEEecCceeecCCCCC-CCcCcccCC
Q 024439 1 MAYGQTGTGKTYTLGRLGKDDASERGIMVRALEDIISSMSVTS----DSVEVSYLQLYMESIQDLLAPEK-VNIPINEDP 75 (267)
Q Consensus 1 ~ayG~tgSGKT~Tl~G~~~~~~~~~Gli~r~~~~lf~~~~~~~----~~v~~S~~EIy~e~v~DLL~~~~-~~~~i~~~~ 75 (267)
||||||||||||||.|+ ++...|||||++++||..+.+.. +.|++||+|||||+|+|||+|.. ..+.+++++
T Consensus 90 FaYGQTGsGKTyTM~G~---~~~~~GiiPraf~~LF~~I~~~~~~~~f~vrvS~lEiYnE~i~DLL~~~~~~~l~lre~p 166 (574)
T KOG4280|consen 90 FAYGQTGSGKTYTMIGP---DPELRGLIPRAFEHLFRHIDERKEKTRFLVRVSYLEIYNESIRDLLSPVNPKGLELREDP 166 (574)
T ss_pred EEeccCCCCCceEeeCC---ChhhCCchhHHHHHHHHHHHhccccceEEEEeehHHHHhHHHHHHhCccCcCCceeeEcC
Confidence 79999999999999876 37889999999999999997764 68999999999999999999977 589999999
Q ss_pred CCCCccCCCCeEEEeCCHHHHHHHHHHHhhccccccCCCcCCCCCccceEEEEEEeeeeccccccccccccccccCCCCC
Q 024439 76 KTGEVSLPGATVVKLRDLDHLLQLLQVGEVNRHAANTKLNTESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELPGDN 155 (267)
Q Consensus 76 ~~g~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~~~~~~~ssrsH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (267)
..| ++|+|++++.|.+++|+..++..|..+|..+++.+|..|||||+||+|+|++.... .+
T Consensus 167 ~~G-v~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~~~~------------------~~ 227 (574)
T KOG4280|consen 167 KCG-VYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIESSEKS------------------DG 227 (574)
T ss_pred CCc-eEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEeeccc------------------CC
Confidence 877 99999999999999999999999999999999999999999999999999883211 11
Q ss_pred CCCceeeeeEEEEECCCCccccccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCCCCchhhHhhHHhcCCCCeE
Q 024439 156 HVPLVRKSKLLIVDLAGSERIDKSGSEGPLLEEAKFINLSLSSLGKCINALAENSP-HIPTRDSKLTRLLRDSFGGSART 234 (267)
Q Consensus 156 ~~~~~~~s~l~fvDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~~l~~~~~-~ipyr~SkLT~lL~~~l~g~~~~ 234 (267)
.....+.|+|+||||||||+..++++.|.+++|+..||+||.+|++||.+|.+++. ||||||||||+||||+|||||+|
T Consensus 228 ~~~~~~~~rlnlvDLagsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~~~~HIPYRdSkLT~LLqdSLGGN~kT 307 (574)
T KOG4280|consen 228 GLMSGRSSKLNLVDLAGSERQSKTGAEGERLKEATNINLSLSALGNVISALVDGSKTHIPYRDSKLTRLLQDSLGGNSKT 307 (574)
T ss_pred CccccccceeeeeeccchhhhcccCccchhhhhhcccchhHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHcCCCceE
Confidence 22345789999999999999999999999999999999999999999999999877 99999999999999999999999
Q ss_pred EEEEEeCCCCCChHHHHHHhHHHHHhhhhhcc
Q 024439 235 SLIITVGPSARNHAETTSTIMFGQRGSIRISV 266 (267)
Q Consensus 235 ~~I~~vsp~~~~~~eTl~TL~f~~r~~~i~~~ 266 (267)
+||+||+|+..+++||++||+||+||+.|.|.
T Consensus 308 ~mianvsp~~~~~~ETlsTLrfA~Rak~I~nk 339 (574)
T KOG4280|consen 308 TMIANVSPSSDNYEETLSTLRFAQRAKAIKNK 339 (574)
T ss_pred EEEEecCchhhhhHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999885
No 2
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.2e-69 Score=503.15 Aligned_cols=246 Identities=37% Similarity=0.584 Sum_probs=227.8
Q ss_pred CcccCCccCccccccccCCCCCCCcChHHHHHHHHHHhcccC-----CCeEEEEEEEEecCceeecCC-C-CCCCcCccc
Q 024439 1 MAYGQTGTGKTYTLGRLGKDDASERGIMVRALEDIISSMSVT-----SDSVEVSYLQLYMESIQDLLA-P-EKVNIPINE 73 (267)
Q Consensus 1 ~ayG~tgSGKT~Tl~G~~~~~~~~~Gli~r~~~~lf~~~~~~-----~~~v~~S~~EIy~e~v~DLL~-~-~~~~~~i~~ 73 (267)
||||||||||||||.| +.+++++|||||+|++||.++... .++|.+||+|||||+|+|||+ | .+.++++++
T Consensus 92 FAYGQTGSGKSYTMMG--~~~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~~p~~kg~LRVRE 169 (1221)
T KOG0245|consen 92 FAYGQTGSGKSYTMMG--FQEPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLNAPKSKGGLRVRE 169 (1221)
T ss_pred EEeccCCCCcceeeec--cCCCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHhhCCCCCCCceeec
Confidence 7999999999999977 557789999999999999998654 468999999999999999999 5 456899999
Q ss_pred CCCCCCccCCCCeEEEeCCHHHHHHHHHHHhhccccccCCCcCCCCCccceEEEEEEeeeeccccccccccccccccCCC
Q 024439 74 DPKTGEVSLPGATVVKLRDLDHLLQLLQVGEVNRHAANTKLNTESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELPG 153 (267)
Q Consensus 74 ~~~~g~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~~~~~~~ssrsH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~~~ 153 (267)
+|..| .||.+|+...|.|+.|+..++..|++.|++++|.+|..|||||+||+|.+.|..+...+.
T Consensus 170 HP~lG-PYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~~~-------------- 234 (1221)
T KOG0245|consen 170 HPILG-PYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQDTG-------------- 234 (1221)
T ss_pred cCccC-hhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeeccccCC--------------
Confidence 99999 669999999999999999999999999999999999999999999999999987754322
Q ss_pred CCCCCceeeeeEEEEECCCCccccccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCC-------CCCCCCCchhhHhhHH
Q 024439 154 DNHVPLVRKSKLLIVDLAGSERIDKSGSEGPLLEEAKFINLSLSSLGKCINALAENS-------PHIPTRDSKLTRLLRD 226 (267)
Q Consensus 154 ~~~~~~~~~s~l~fvDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~~l~~~~-------~~ipyr~SkLT~lL~~ 226 (267)
....++|+|.+||||||||...++..|.+++|+..||+||.+|++||.||++.+ .+||||||.||+||++
T Consensus 235 ---l~sek~SKIsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLkE 311 (1221)
T KOG0245|consen 235 ---LDSEKVSKISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLKE 311 (1221)
T ss_pred ---CcceeeeeeeEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHHH
Confidence 224578999999999999999999999999999999999999999999999743 3899999999999999
Q ss_pred hcCCCCeEEEEEEeCCCCCChHHHHHHhHHHHHhhhhhcc
Q 024439 227 SFGGSARTSLIITVGPSARNHAETTSTIMFGQRGSIRISV 266 (267)
Q Consensus 227 ~l~g~~~~~~I~~vsp~~~~~~eTl~TL~f~~r~~~i~~~ 266 (267)
.||||++|.||+++||++.||+|||+||+||+||++|+|.
T Consensus 312 nLGGNSKTaMIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~ 351 (1221)
T KOG0245|consen 312 NLGGNSKTAMIAALSPADINYEETLSTLRYADRAKQIVNN 351 (1221)
T ss_pred hcCCcchhhhhhccChhhcChHHHHHHHHHhhHhhhhhcc
Confidence 9999999999999999999999999999999999999985
No 3
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=6.6e-67 Score=462.67 Aligned_cols=243 Identities=43% Similarity=0.597 Sum_probs=219.9
Q ss_pred CcccCCccCccccccccCCC----CCCCcChHHHHHHHHHHhcccC--------CCeEEEEEEEEecCceeecCCCCCCC
Q 024439 1 MAYGQTGTGKTYTLGRLGKD----DASERGIMVRALEDIISSMSVT--------SDSVEVSYLQLYMESIQDLLAPEKVN 68 (267)
Q Consensus 1 ~ayG~tgSGKT~Tl~G~~~~----~~~~~Gli~r~~~~lf~~~~~~--------~~~v~~S~~EIy~e~v~DLL~~~~~~ 68 (267)
||||||||||||||+|.... ...++|||||++++||..+... .+.|.+||+|||||+++|||++....
T Consensus 79 ~aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~~~~~~ 158 (337)
T cd01373 79 FAYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLDPTSRN 158 (337)
T ss_pred EEeCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEeeeCCCCCCCC
Confidence 79999999999999885432 2357899999999999877532 45899999999999999999998889
Q ss_pred cCcccCCCCCCccCCCCeEEEeCCHHHHHHHHHHHhhccccccCCCcCCCCCccceEEEEEEeeeecccccccccccccc
Q 024439 69 IPINEDPKTGEVSLPGATVVKLRDLDHLLQLLQVGEVNRHAANTKLNTESSRSHAILVVYIRRSVHEIIDKITSEEKDTR 148 (267)
Q Consensus 69 ~~i~~~~~~g~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~~~~~~~ssrsH~i~~i~v~~~~~~~~~~~~~~~~~~~ 148 (267)
+.+++++..| +++.|++++.|.|++|+.++|..|..+|..+++..|..|||||+||+|+|.+....
T Consensus 159 l~i~e~~~~~-~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~------------- 224 (337)
T cd01373 159 LKIREDIKKG-VYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKK------------- 224 (337)
T ss_pred ceEEECCCCC-EEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEeecC-------------
Confidence 9999998766 89999999999999999999999999999999999999999999999999765321
Q ss_pred ccCCCCCCCCceeeeeEEEEECCCCccccccCCCchhHHHHHHHHHHHHHHHHHHHHHhc----CCCCCCCCCchhhHhh
Q 024439 149 TELPGDNHVPLVRKSKLLIVDLAGSERIDKSGSEGPLLEEAKFINLSLSSLGKCINALAE----NSPHIPTRDSKLTRLL 224 (267)
Q Consensus 149 ~~~~~~~~~~~~~~s~l~fvDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~~l~~----~~~~ipyr~SkLT~lL 224 (267)
+.......|+|+||||||||+..+.+..+.+.+|+..||+||.+|++||.+|++ +..|+|||+||||+||
T Consensus 225 ------~~~~~~~~s~l~~VDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~~~~~ipyR~SkLT~lL 298 (337)
T cd01373 225 ------ASSTNIRTSRLNLVDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHGKQRHVPYRDSKLTFLL 298 (337)
T ss_pred ------CCCCcEEEEEEEEEECCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHHHhhccCCCCccCCcccHHHHHH
Confidence 111245679999999999999999999999999999999999999999999985 3579999999999999
Q ss_pred HHhcCCCCeEEEEEEeCCCCCChHHHHHHhHHHHHhhhh
Q 024439 225 RDSFGGSARTSLIITVGPSARNHAETTSTIMFGQRGSIR 263 (267)
Q Consensus 225 ~~~l~g~~~~~~I~~vsp~~~~~~eTl~TL~f~~r~~~i 263 (267)
+|+|||+|+|+||+||+|...+++||++||+||+||++|
T Consensus 299 ~dsLggns~t~~I~~vsP~~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 299 RDSLGGNAKTTIIANVSPSSKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred HHhcCCCceEEEEEEECCCcccHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999986
No 4
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=8.1e-68 Score=500.82 Aligned_cols=247 Identities=43% Similarity=0.617 Sum_probs=226.6
Q ss_pred CcccCCccCccccccc----cCCCCCCCcChHHHHHHHHHHhcccC--CCeEEEEEEEEecCceeecCCCCCC---CcCc
Q 024439 1 MAYGQTGTGKTYTLGR----LGKDDASERGIMVRALEDIISSMSVT--SDSVEVSYLQLYMESIQDLLAPEKV---NIPI 71 (267)
Q Consensus 1 ~ayG~tgSGKT~Tl~G----~~~~~~~~~Gli~r~~~~lf~~~~~~--~~~v~~S~~EIy~e~v~DLL~~~~~---~~~i 71 (267)
|||||||+||||||+| .+++.+++.|||||++.+||..+... .|.|.|||+|+|||+++|||++... ...+
T Consensus 133 FAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~~~~EYsvKVSfLELYNEEl~DLLa~~~~~~~~~~~ 212 (1041)
T KOG0243|consen 133 FAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEAQGAEYSVKVSFLELYNEELTDLLASEDTSDKKLRI 212 (1041)
T ss_pred EEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHHhcCCeEEEEEEehhhhhHHHHHhcCCcccccccccc
Confidence 7999999999999988 24556788999999999999999776 4799999999999999999998643 3555
Q ss_pred ccCC----CCCCccCCCCeEEEeCCHHHHHHHHHHHhhccccccCCCcCCCCCccceEEEEEEeeeeccccccccccccc
Q 024439 72 NEDP----KTGEVSLPGATVVKLRDLDHLLQLLQVGEVNRHAANTKLNTESSRSHAILVVYIRRSVHEIIDKITSEEKDT 147 (267)
Q Consensus 72 ~~~~----~~g~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~~~~~~~ssrsH~i~~i~v~~~~~~~~~~~~~~~~~~ 147 (267)
.+++ ..|.+.++|+.++.|.++.|++++|.+|..+|++++|.+|..|||||+||+|+|......
T Consensus 213 k~~~~~~~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhike~t------------ 280 (1041)
T KOG0243|consen 213 KDDSTIVDGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIKENT------------ 280 (1041)
T ss_pred ccCCcccCCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEecCC------------
Confidence 5555 567799999999999999999999999999999999999999999999999999765331
Q ss_pred cccCCCCCCCCceeeeeEEEEECCCCccccccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhHhhHHh
Q 024439 148 RTELPGDNHVPLVRKSKLLIVDLAGSERIDKSGSEGPLLEEAKFINLSLSSLGKCINALAENSPHIPTRDSKLTRLLRDS 227 (267)
Q Consensus 148 ~~~~~~~~~~~~~~~s~l~fvDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~~l~~~~~~ipyr~SkLT~lL~~~ 227 (267)
..+.+.+++|+|.+|||||||-..++++.+.|.+|+..||+||.+|++||.||.++..|||||+|||||||||+
T Consensus 281 ------~~geelvK~GKLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe~s~HIPYRESKLTRLLQDS 354 (1041)
T KOG0243|consen 281 ------PEGEELVKIGKLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVINALVEHSGHIPYRESKLTRLLQDS 354 (1041)
T ss_pred ------CcchhhHhhcccceeeccccccccccccccchhHHhhhhhHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHHH
Confidence 22445788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeEEEEEEeCCCCCChHHHHHHhHHHHHhhhhhc
Q 024439 228 FGGSARTSLIITVGPSARNHAETTSTIMFGQRGSIRIS 265 (267)
Q Consensus 228 l~g~~~~~~I~~vsp~~~~~~eTl~TL~f~~r~~~i~~ 265 (267)
|||.++|++|+||||+..+.+||++||+||.||+.|+|
T Consensus 355 LGGkTKT~iIATiSPa~~~lEETlSTLEYA~RAKnIkN 392 (1041)
T KOG0243|consen 355 LGGKTKTCIIATISPAKHNLEETLSTLEYAHRAKNIKN 392 (1041)
T ss_pred hCCCceeEEEEEeCCCcccHHHHHHHHHHHHHhhhccC
Confidence 99999999999999999999999999999999999998
No 5
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=5e-66 Score=457.24 Aligned_cols=240 Identities=40% Similarity=0.616 Sum_probs=221.2
Q ss_pred CcccCCccCccccccccCCCCCCCcChHHHHHHHHHHhcccC----CCeEEEEEEEEecCceeecCCCCCCCcCcccCCC
Q 024439 1 MAYGQTGTGKTYTLGRLGKDDASERGIMVRALEDIISSMSVT----SDSVEVSYLQLYMESIQDLLAPEKVNIPINEDPK 76 (267)
Q Consensus 1 ~ayG~tgSGKT~Tl~G~~~~~~~~~Gli~r~~~~lf~~~~~~----~~~v~~S~~EIy~e~v~DLL~~~~~~~~i~~~~~ 76 (267)
||||||||||||||+| +..++|||||++++||+.+... .+.|.+||+|||+|+|+|||++....+.+++++.
T Consensus 92 ~ayGqtGSGKTyTm~G----~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~~l~i~ed~~ 167 (338)
T cd01370 92 FAYGATGAGKTHTMLG----TDSDPGLMVLTMKDLFDKIEERKDDKEFEVSLSYLEIYNETIRDLLSPSSGPLELREDPN 167 (338)
T ss_pred EeeCCCCCCCeEEEcC----CCCCCchHHHHHHHHHHhhhhcccCceEEEEEEEEEEECCEEEECCCCCCCCceEEEcCC
Confidence 7999999999999966 3467899999999999988654 3589999999999999999999888999999987
Q ss_pred CCCccCCCCeEEEeCCHHHHHHHHHHHhhccccccCCCcCCCCCccceEEEEEEeeeeccccccccccccccccCCCCCC
Q 024439 77 TGEVSLPGATVVKLRDLDHLLQLLQVGEVNRHAANTKLNTESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELPGDNH 156 (267)
Q Consensus 77 ~g~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~~~~~~~ssrsH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (267)
|.+++.|+++++|.|++|++++|+.|..+|....+.+|..|||||+||+|++.+..... +.
T Consensus 168 -~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~------------------~~ 228 (338)
T cd01370 168 -QGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTA------------------SI 228 (338)
T ss_pred -CCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEEEEEEEecCC------------------CC
Confidence 55999999999999999999999999999999999999999999999999998764321 11
Q ss_pred CCceeeeeEEEEECCCCccccccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCC---CCCCCCCchhhHhhHHhcCCCCe
Q 024439 157 VPLVRKSKLLIVDLAGSERIDKSGSEGPLLEEAKFINLSLSSLGKCINALAENS---PHIPTRDSKLTRLLRDSFGGSAR 233 (267)
Q Consensus 157 ~~~~~~s~l~fvDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~~l~~~~---~~ipyr~SkLT~lL~~~l~g~~~ 233 (267)
......|+|+||||||+|+..+....+.+.+|+..||+||.+|++||.+|++++ .|+|||+||||+||+|+|||+|+
T Consensus 229 ~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~~~~~ipyR~SkLT~lL~d~Lggn~~ 308 (338)
T cd01370 229 NQQVRIGKLSLIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKKKNKHIPYRDSKLTRLLKDSLGGNCK 308 (338)
T ss_pred CCcEEEEEEEEEECCCCccccccCCCCccccccchhhHHHHHHHHHHHHHHhccCCCCcCCCcCCHHHHHHHHhcCCCCe
Confidence 234678999999999999999999999999999999999999999999999987 89999999999999999999999
Q ss_pred EEEEEEeCCCCCChHHHHHHhHHHHHhhhh
Q 024439 234 TSLIITVGPSARNHAETTSTIMFGQRGSIR 263 (267)
Q Consensus 234 ~~~I~~vsp~~~~~~eTl~TL~f~~r~~~i 263 (267)
++||+||+|...+++||++||+||+||++|
T Consensus 309 t~~I~~vsp~~~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 309 TVMIANISPSSSHYEETHNTLKYANRAKNI 338 (338)
T ss_pred EEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999986
No 6
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=2.7e-65 Score=488.52 Aligned_cols=248 Identities=38% Similarity=0.578 Sum_probs=223.4
Q ss_pred CcccCCccCccccccccCCC------CCCCcChHHHHHHHHHHhccc---------CCCeEEEEEEEEecCceeecCCCC
Q 024439 1 MAYGQTGTGKTYTLGRLGKD------DASERGIMVRALEDIISSMSV---------TSDSVEVSYLQLYMESIQDLLAPE 65 (267)
Q Consensus 1 ~ayG~tgSGKT~Tl~G~~~~------~~~~~Gli~r~~~~lf~~~~~---------~~~~v~~S~~EIy~e~v~DLL~~~ 65 (267)
||||||||||||||+|...+ ...++|||||++++||..+.. ..+.|++||+|||||+|+|||++.
T Consensus 170 FAYGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~vSyLEIYNEkI~DLLsp~ 249 (1320)
T PLN03188 170 FAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQITDLLDPS 249 (1320)
T ss_pred ecCCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEEEEEEEeeecCcceeccccc
Confidence 79999999999999885322 346789999999999998753 246899999999999999999998
Q ss_pred CCCcCcccCCCCCCccCCCCeEEEeCCHHHHHHHHHHHhhccccccCCCcCCCCCccceEEEEEEeeeeccccccccccc
Q 024439 66 KVNIPINEDPKTGEVSLPGATVVKLRDLDHLLQLLQVGEVNRHAANTKLNTESSRSHAILVVYIRRSVHEIIDKITSEEK 145 (267)
Q Consensus 66 ~~~~~i~~~~~~g~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~~~~~~~ssrsH~i~~i~v~~~~~~~~~~~~~~~~ 145 (267)
..++.+++++..| ++|.|++++.|.|++|+.++|..|..+|..+.|.+|..|||||+||+|+|.+.....
T Consensus 250 ~k~L~IRED~kgG-v~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~Ves~~k~~--------- 319 (1320)
T PLN03188 250 QKNLQIREDVKSG-VYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSV--------- 319 (1320)
T ss_pred cCCceEEEcCCCC-eEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCceeEEEEEEEeeccc---------
Confidence 8899999998766 899999999999999999999999999999999999999999999999997643211
Q ss_pred cccccCCCCCCCCceeeeeEEEEECCCCccccccCCCchhHHHHHHHHHHHHHHHHHHHHHhc-----CCCCCCCCCchh
Q 024439 146 DTRTELPGDNHVPLVRKSKLLIVDLAGSERIDKSGSEGPLLEEAKFINLSLSSLGKCINALAE-----NSPHIPTRDSKL 220 (267)
Q Consensus 146 ~~~~~~~~~~~~~~~~~s~l~fvDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~~l~~-----~~~~ipyr~SkL 220 (267)
.++......|+|+||||||||+..+.+..+.+++|+..||+||.+|++||.+|++ +..|||||+|||
T Consensus 320 --------~dg~ss~r~SkLnLVDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~~HIPYRDSKL 391 (1320)
T PLN03188 320 --------ADGLSSFKTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPYRDSRL 391 (1320)
T ss_pred --------CCCCcceEEEEEEEEECCCchhccccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCCCcCCCCcchH
Confidence 1112345789999999999999999999999999999999999999999999986 346999999999
Q ss_pred hHhhHHhcCCCCeEEEEEEeCCCCCChHHHHHHhHHHHHhhhhhcc
Q 024439 221 TRLLRDSFGGSARTSLIITVGPSARNHAETTSTIMFGQRGSIRISV 266 (267)
Q Consensus 221 T~lL~~~l~g~~~~~~I~~vsp~~~~~~eTl~TL~f~~r~~~i~~~ 266 (267)
|+||+|+|||||+|+||+||+|...+++||++||+||+||++|+|.
T Consensus 392 TrLLQDSLGGNSKTvMIa~VSPs~~~~eETLSTLrFAsRAK~IKNk 437 (1320)
T PLN03188 392 TFLLQESLGGNAKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNK 437 (1320)
T ss_pred HHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHHHHHHHhhcCcc
Confidence 9999999999999999999999999999999999999999999985
No 7
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=100.00 E-value=4.4e-66 Score=459.51 Aligned_cols=244 Identities=49% Similarity=0.723 Sum_probs=229.1
Q ss_pred CcccCCccCccccccccCCCCCCCcChHHHHHHHHHHhcccCC----CeEEEEEEEEecCceeecCCCCCCCcCcccCCC
Q 024439 1 MAYGQTGTGKTYTLGRLGKDDASERGIMVRALEDIISSMSVTS----DSVEVSYLQLYMESIQDLLAPEKVNIPINEDPK 76 (267)
Q Consensus 1 ~ayG~tgSGKT~Tl~G~~~~~~~~~Gli~r~~~~lf~~~~~~~----~~v~~S~~EIy~e~v~DLL~~~~~~~~i~~~~~ 76 (267)
||||||||||||||.|.+. ++...|||||++++||.++...+ ++|.|||+|||+|+++|||+|.+.++.+++| +
T Consensus 87 faYGqT~sGKTytm~G~~~-d~~~~GIipRi~~diF~~Iys~~~n~efhVkVsy~EIYmEKi~DLL~~~k~nlsvheD-K 164 (607)
T KOG0240|consen 87 FAYGQTGSGKTYTMEGIGH-DPEEMGIIPRILNDIFDHIYSMEENLEFHVKVSYFEIYMEKIRDLLDPEKTNLSVHED-K 164 (607)
T ss_pred EEecCCCCCcceeecccCC-ChhhcCcHHHHHHHHHHHHhcCcccceEEEEEEeehhhhhHHHHHhCcccCCceeecc-c
Confidence 7999999999999988754 56677999999999999997754 5799999999999999999999999999999 6
Q ss_pred CCCccCCCCeEEEeCCHHHHHHHHHHHhhccccccCCCcCCCCCccceEEEEEEeeeeccccccccccccccccCCCCCC
Q 024439 77 TGEVSLPGATVVKLRDLDHLLQLLQVGEVNRHAANTKLNTESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELPGDNH 156 (267)
Q Consensus 77 ~g~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~~~~~~~ssrsH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (267)
+..++++|+++..|.++++++.+++.|..+|..+.+.+|.+|||||.||+|+|.|......
T Consensus 165 ~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~e~~------------------- 225 (607)
T KOG0240|consen 165 NRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENVEDK------------------- 225 (607)
T ss_pred CCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEeccccch-------------------
Confidence 6679999999999999999999999999999999999999999999999999999754322
Q ss_pred CCceeeeeEEEEECCCCccccccCCCchhHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCCCCchhhHhhHHhcCCCCeEE
Q 024439 157 VPLVRKSKLLIVDLAGSERIDKSGSEGPLLEEAKFINLSLSSLGKCINALAEN-SPHIPTRDSKLTRLLRDSFGGSARTS 235 (267)
Q Consensus 157 ~~~~~~s~l~fvDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~~l~~~-~~~ipyr~SkLT~lL~~~l~g~~~~~ 235 (267)
..+.|+|++|||||+|+..+++..|.-+.|++.||+||.+|++||++|+++ ..|||||||||||+|+|+|||||+|.
T Consensus 226 --~~~~gkLyLVDLaGSEkvsKtga~g~vleEaK~INkSLsaLgnvI~aLa~g~~shipYRDSKLTRILqdSLGGNsRTt 303 (607)
T KOG0240|consen 226 --RKLSGKLYLVDLAGSEKVSKTGAEGAVLEEAKNINKSLSALGNVINALAEGPKSHIPYRDSKLTRILQDSLGGNSRTT 303 (607)
T ss_pred --hhccccEEEEEcccccccCCCCccchhHHHHhhhhhhHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhCCCcceE
Confidence 347899999999999999999999999999999999999999999999998 78999999999999999999999999
Q ss_pred EEEEeCCCCCChHHHHHHhHHHHHhhhhhccC
Q 024439 236 LIITVGPSARNHAETTSTIMFGQRGSIRISVV 267 (267)
Q Consensus 236 ~I~~vsp~~~~~~eTl~TL~f~~r~~~i~~~~ 267 (267)
+|.|++|+.-+..||.+||+|++||+.|+|.|
T Consensus 304 lIi~csPss~n~~ET~STl~fg~rak~ikN~v 335 (607)
T KOG0240|consen 304 LIICCSPSSLNEAETKSTLRFGNRAKTIKNTV 335 (607)
T ss_pred EEEecCCccccccccccchhhccccccccchh
Confidence 99999999999999999999999999999975
No 8
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=1.5e-64 Score=448.76 Aligned_cols=241 Identities=36% Similarity=0.558 Sum_probs=217.5
Q ss_pred CcccCCccCccccccccCCCCCCCcChHHHHHHHHHHhcccCCCeEEEEEEEEecCceeecCCCCCC------CcCcccC
Q 024439 1 MAYGQTGTGKTYTLGRLGKDDASERGIMVRALEDIISSMSVTSDSVEVSYLQLYMESIQDLLAPEKV------NIPINED 74 (267)
Q Consensus 1 ~ayG~tgSGKT~Tl~G~~~~~~~~~Gli~r~~~~lf~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~------~~~i~~~ 74 (267)
||||||||||||||+| +..++|||||++++||+.+.. +.|.+||+|||||+|+|||++... .+.++++
T Consensus 93 ~aYGqtGSGKTyTm~G----~~~~~Gli~r~~~~lF~~~~~--~~v~~S~~EIyne~v~DLL~~~~~~~~~~~~l~i~ed 166 (345)
T cd01368 93 FTYGVTNSGKTYTMQG----SPGDGGILPRSLDVIFNSIGG--YSVFVSYVEIYNNYIYDLLEDSPSSTKKRQSLRLRED 166 (345)
T ss_pred EEeCCCCCCCeEEecC----CCCCCchHHHHHHHHHHHHHh--eeEEEEEEEEeCCEeEeCCCCccccccCCCceEEEEC
Confidence 6999999999999966 447899999999999999876 999999999999999999998543 5888998
Q ss_pred CCCCCccCCCCeEEEeCCHHHHHHHHHHHhhccccccCCCcCCCCCccceEEEEEEeeeeccccccccccccccccCCCC
Q 024439 75 PKTGEVSLPGATVVKLRDLDHLLQLLQVGEVNRHAANTKLNTESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELPGD 154 (267)
Q Consensus 75 ~~~g~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~~~~~~~ssrsH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (267)
+. |.+++.|++++.|.|++|+.++|+.|..+|..+.+..|..|||||+||+|++.+........ ..
T Consensus 167 ~~-~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~i~v~~~~~~~~~~-------------~~ 232 (345)
T cd01368 167 HN-GNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAPGDSDGD-------------VD 232 (345)
T ss_pred CC-CCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEEEEEEEeccCcccc-------------cc
Confidence 86 66999999999999999999999999999999999999999999999999998764321100 01
Q ss_pred CCCCceeeeeEEEEECCCCccccccCCCchhHHHHHHHHHHHHHHHHHHHHHhc------CCCCCCCCCchhhHhhHHhc
Q 024439 155 NHVPLVRKSKLLIVDLAGSERIDKSGSEGPLLEEAKFINLSLSSLGKCINALAE------NSPHIPTRDSKLTRLLRDSF 228 (267)
Q Consensus 155 ~~~~~~~~s~l~fvDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~~l~~------~~~~ipyr~SkLT~lL~~~l 228 (267)
...+.+..|+|+||||||+|+..+.+..+.+.+|+..||+||.+|++||.+|++ +..|||||+||||+||+|+|
T Consensus 233 ~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPyR~SkLT~lL~~~l 312 (345)
T cd01368 233 QDKDQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKLTHLFQNYF 312 (345)
T ss_pred cCCCceEEEEEEEEecccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhcccCCCCcCCCcCCHHHHHHHHhc
Confidence 122456789999999999999999999999999999999999999999999987 45799999999999999999
Q ss_pred CCCCeEEEEEEeCCCCCChHHHHHHhHHHHHhh
Q 024439 229 GGSARTSLIITVGPSARNHAETTSTIMFGQRGS 261 (267)
Q Consensus 229 ~g~~~~~~I~~vsp~~~~~~eTl~TL~f~~r~~ 261 (267)
+|+++|+||+||+|...+++||++||+||++|+
T Consensus 313 ~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 313 DGEGKARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred CCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999985
No 9
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=1.3e-63 Score=444.94 Aligned_cols=248 Identities=44% Similarity=0.614 Sum_probs=224.3
Q ss_pred CcccCCccCccccccccCCC-------CCCCcChHHHHHHHHHHhcccC--CCeEEEEEEEEecCceeecCCCC---CCC
Q 024439 1 MAYGQTGTGKTYTLGRLGKD-------DASERGIMVRALEDIISSMSVT--SDSVEVSYLQLYMESIQDLLAPE---KVN 68 (267)
Q Consensus 1 ~ayG~tgSGKT~Tl~G~~~~-------~~~~~Gli~r~~~~lf~~~~~~--~~~v~~S~~EIy~e~v~DLL~~~---~~~ 68 (267)
||||++||||||||+|.... ..+++|||||++++||+.+... .+.|++||+|||+|+++|||++. ...
T Consensus 86 ~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~~ 165 (352)
T cd01364 86 FAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQNTEYSVKVSYLELYNEELFDLLSSESDLNKP 165 (352)
T ss_pred EECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhccceeEEEEEEEEeeCCeeeeCCCCccccCcc
Confidence 69999999999999885332 2457899999999999988763 56899999999999999999986 567
Q ss_pred cCcccCC-CCCCccCCCCeEEEeCCHHHHHHHHHHHhhccccccCCCcCCCCCccceEEEEEEeeeeccccccccccccc
Q 024439 69 IPINEDP-KTGEVSLPGATVVKLRDLDHLLQLLQVGEVNRHAANTKLNTESSRSHAILVVYIRRSVHEIIDKITSEEKDT 147 (267)
Q Consensus 69 ~~i~~~~-~~g~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~~~~~~~ssrsH~i~~i~v~~~~~~~~~~~~~~~~~~ 147 (267)
+.+++++ ..+.+++.|+++++|.|++|+.++|+.|.++|..+.+..|..|||||+||+|++.+.....
T Consensus 166 l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~~~----------- 234 (352)
T cd01364 166 LRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETTI----------- 234 (352)
T ss_pred ceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceEEEEEEEEeccCC-----------
Confidence 8899985 3455999999999999999999999999999999999999999999999999998763321
Q ss_pred cccCCCCCCCCceeeeeEEEEECCCCccccccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhHhhHHh
Q 024439 148 RTELPGDNHVPLVRKSKLLIVDLAGSERIDKSGSEGPLLEEAKFINLSLSSLGKCINALAENSPHIPTRDSKLTRLLRDS 227 (267)
Q Consensus 148 ~~~~~~~~~~~~~~~s~l~fvDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~~l~~~~~~ipyr~SkLT~lL~~~ 227 (267)
........|+|+||||||+|+.++.+..+.+.+|+..||+||.+|++||.+|+.++.++|||+|+||+||+|+
T Consensus 235 -------~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~~~~~vpyR~S~LT~lL~~~ 307 (352)
T cd01364 235 -------SGEELVKIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVEKSPHIPYRESKLTRLLQDS 307 (352)
T ss_pred -------CCCccEEEEEEEEEECCCccccccccCcchhhHHHhhhhHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHh
Confidence 1123456799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeEEEEEEeCCCCCChHHHHHHhHHHHHhhhhhcc
Q 024439 228 FGGSARTSLIITVGPSARNHAETTSTIMFGQRGSIRISV 266 (267)
Q Consensus 228 l~g~~~~~~I~~vsp~~~~~~eTl~TL~f~~r~~~i~~~ 266 (267)
|||+|+++||+||+|...+++||++||+||+|+++|+|.
T Consensus 308 Lgg~s~t~~I~~vsp~~~~~~eTl~TL~~a~~~~~i~n~ 346 (352)
T cd01364 308 LGGRTKTSIIATISPASINLEETLSTLEYAHRAKNIKNK 346 (352)
T ss_pred cCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCc
Confidence 999999999999999999999999999999999999874
No 10
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=2.8e-63 Score=443.04 Aligned_cols=244 Identities=39% Similarity=0.620 Sum_probs=221.4
Q ss_pred CcccCCccCccccccccCCCCCCCcChHHHHHHHHHHhcccC-----CCeEEEEEEEEecCceeecCCCCC---CCcCcc
Q 024439 1 MAYGQTGTGKTYTLGRLGKDDASERGIMVRALEDIISSMSVT-----SDSVEVSYLQLYMESIQDLLAPEK---VNIPIN 72 (267)
Q Consensus 1 ~ayG~tgSGKT~Tl~G~~~~~~~~~Gli~r~~~~lf~~~~~~-----~~~v~~S~~EIy~e~v~DLL~~~~---~~~~i~ 72 (267)
||||+|||||||||+| +..++|||||++++||+.+... .+.|++||+|||+|+|+|||++.. ..+.++
T Consensus 93 ~ayGqtGSGKT~Tm~G----~~~~~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~~l~i~ 168 (356)
T cd01365 93 FAYGQTGSGKSYTMMG----YKEEKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLNPKKKNKGNLKVR 168 (356)
T ss_pred EEecCCCCCCeEEecC----CCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeeeeCCCCCccCCcCceEE
Confidence 6999999999999966 3447899999999999988654 358999999999999999999874 578899
Q ss_pred cCCCCCCccCCCCeEEEeCCHHHHHHHHHHHhhccccccCCCcCCCCCccceEEEEEEeeeeccccccccccccccccCC
Q 024439 73 EDPKTGEVSLPGATVVKLRDLDHLLQLLQVGEVNRHAANTKLNTESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELP 152 (267)
Q Consensus 73 ~~~~~g~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~~~~~~~ssrsH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~~ 152 (267)
+++..| ++++|+++++|.|++|+..+|+.|.++|..+.+..|..|||||+||+|++.+......
T Consensus 169 ~~~~~g-~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~~~~~~~~--------------- 232 (356)
T cd01365 169 EHPVLG-PYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKE--------------- 232 (356)
T ss_pred ECCCCC-EEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEEEEEEEEEecccC---------------
Confidence 988766 8899999999999999999999999999999999999999999999999987644211
Q ss_pred CCCCCCceeeeeEEEEECCCCccccccCCCchhHHHHHHHHHHHHHHHHHHHHHhcC--------CCCCCCCCchhhHhh
Q 024439 153 GDNHVPLVRKSKLLIVDLAGSERIDKSGSEGPLLEEAKFINLSLSSLGKCINALAEN--------SPHIPTRDSKLTRLL 224 (267)
Q Consensus 153 ~~~~~~~~~~s~l~fvDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~~l~~~--------~~~ipyr~SkLT~lL 224 (267)
........|+|+||||||+|+..+.+..+.+.+|+..||+||.+|++||.+|+++ +.++|||+||||+||
T Consensus 233 --~~~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR~SkLT~lL 310 (356)
T cd01365 233 --TDLTTEKVSKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYRDSVLTWLL 310 (356)
T ss_pred --CCCCceEEEEEEeeecccccccccccccchhhHHHHHHhHHHHHHHHHHHHHHhcccccccCCCCcCCCcCcHHHHHH
Confidence 1123457899999999999999999999999999999999999999999999874 469999999999999
Q ss_pred HHhcCCCCeEEEEEEeCCCCCChHHHHHHhHHHHHhhhhhcc
Q 024439 225 RDSFGGSARTSLIITVGPSARNHAETTSTIMFGQRGSIRISV 266 (267)
Q Consensus 225 ~~~l~g~~~~~~I~~vsp~~~~~~eTl~TL~f~~r~~~i~~~ 266 (267)
+|+|+|+++++||+||+|...+++||++||+||+|+++|+|.
T Consensus 311 ~~~lgg~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~ 352 (356)
T cd01365 311 KENLGGNSKTAMIATISPADINYEETLSTLRYADRAKKIVNV 352 (356)
T ss_pred HHhcCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCc
Confidence 999999999999999999999999999999999999999985
No 11
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=3.3e-63 Score=438.86 Aligned_cols=243 Identities=40% Similarity=0.629 Sum_probs=221.3
Q ss_pred CcccCCccCccccccccCCCCCCCcChHHHHHHHHHHhcccC---CCeEEEEEEEEecCceeecCCCCC-CCcCcccCCC
Q 024439 1 MAYGQTGTGKTYTLGRLGKDDASERGIMVRALEDIISSMSVT---SDSVEVSYLQLYMESIQDLLAPEK-VNIPINEDPK 76 (267)
Q Consensus 1 ~ayG~tgSGKT~Tl~G~~~~~~~~~Gli~r~~~~lf~~~~~~---~~~v~~S~~EIy~e~v~DLL~~~~-~~~~i~~~~~ 76 (267)
||||++||||||||+|. .....++|||||++++||+.+... .+.|.+||+|||+|+++|||++.. ..+.+++++.
T Consensus 86 ~ayG~tgSGKTyTm~G~-~~~~~~~Glipr~~~~Lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~l~i~~~~~ 164 (333)
T cd01371 86 FAYGQTGTGKTFTMEGV-REPPELRGIIPNSFAHIFGHIAKAENVQFLVRVSYLEIYNEEVRDLLGKDQKKKLELKERPD 164 (333)
T ss_pred EecCCCCCCCcEeecCC-CCcccccchHHHHHHHHHHHHhhccCccEEEEEEEEEeeCCeeeeCCCCCCCCceeEEEcCC
Confidence 79999999999999874 234568999999999999988654 468999999999999999999875 5789999987
Q ss_pred CCCccCCCCeEEEeCCHHHHHHHHHHHhhccccccCCCcCCCCCccceEEEEEEeeeeccccccccccccccccCCCCCC
Q 024439 77 TGEVSLPGATVVKLRDLDHLLQLLQVGEVNRHAANTKLNTESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELPGDNH 156 (267)
Q Consensus 77 ~g~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~~~~~~~ssrsH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (267)
.| +++.|+++++|.|++|+..+|..|.++|....+..|..|||||+||+|+|.+..... ..
T Consensus 165 ~~-~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~------------------~~ 225 (333)
T cd01371 165 RG-VYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGE------------------DG 225 (333)
T ss_pred CC-EEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEeccC------------------CC
Confidence 55 889999999999999999999999999999999999999999999999998764321 12
Q ss_pred CCceeeeeEEEEECCCCccccccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCCCCchhhHhhHHhcCCCCeEE
Q 024439 157 VPLVRKSKLLIVDLAGSERIDKSGSEGPLLEEAKFINLSLSSLGKCINALAENSP-HIPTRDSKLTRLLRDSFGGSARTS 235 (267)
Q Consensus 157 ~~~~~~s~l~fvDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~~l~~~~~-~ipyr~SkLT~lL~~~l~g~~~~~ 235 (267)
...+..|+|+||||||+|+..+.+..+.+.+|+..||+||.+|++||.+|++++. |+|||+|+||++|+|+|+|+++++
T Consensus 226 ~~~~~~s~L~~VDLAGsEr~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~~~~~~ipyR~SkLT~lL~~~l~g~s~t~ 305 (333)
T cd01371 226 ENHIRVGKLNLVDLAGSERQSKTGATGDRLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNSKTV 305 (333)
T ss_pred CCcEEEEEEEEEECCCCCcccccCCchhhhHhHhhhhhHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCceEE
Confidence 2346789999999999999999988899999999999999999999999999876 999999999999999999999999
Q ss_pred EEEEeCCCCCChHHHHHHhHHHHHhhhh
Q 024439 236 LIITVGPSARNHAETTSTIMFGQRGSIR 263 (267)
Q Consensus 236 ~I~~vsp~~~~~~eTl~TL~f~~r~~~i 263 (267)
||+||+|...+++||++||+||+|+|+|
T Consensus 306 ~I~~vsP~~~~~~eTl~TL~fa~r~r~I 333 (333)
T cd01371 306 MCANIGPADYNYDETLSTLRYANRAKNI 333 (333)
T ss_pred EEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999986
No 12
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=5.1e-63 Score=436.79 Aligned_cols=240 Identities=47% Similarity=0.708 Sum_probs=221.0
Q ss_pred CcccCCccCccccccccCCCCCCCcChHHHHHHHHHHhcccC----CCeEEEEEEEEecCceeecCCCCCCCcCcccCCC
Q 024439 1 MAYGQTGTGKTYTLGRLGKDDASERGIMVRALEDIISSMSVT----SDSVEVSYLQLYMESIQDLLAPEKVNIPINEDPK 76 (267)
Q Consensus 1 ~ayG~tgSGKT~Tl~G~~~~~~~~~Gli~r~~~~lf~~~~~~----~~~v~~S~~EIy~e~v~DLL~~~~~~~~i~~~~~ 76 (267)
||||++||||||||+|.. ....++|||||++++||+.+... .+.|.+||+|||+|+++|||++....+.+++++.
T Consensus 81 ~ayG~tgSGKT~Tm~G~~-~~~~~~Giipr~~~~Lf~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~l~i~~~~~ 159 (325)
T cd01369 81 FAYGQTGSGKTYTMEGPP-GDPELKGIIPRIVHDIFEHISSMDENLEFHVKVSYLEIYMEKIRDLLDVSKDNLQVHEDKN 159 (325)
T ss_pred EEeCCCCCCceEEecCCC-CccccCChHHHHHHHHHHHHhhccCCceEEEEEEEEEEECCChhhcccCccCCceEEEcCC
Confidence 699999999999998743 23558899999999999988654 3589999999999999999999888899999986
Q ss_pred CCCccCCCCeEEEeCCHHHHHHHHHHHhhccccccCCCcCCCCCccceEEEEEEeeeeccccccccccccccccCCCCCC
Q 024439 77 TGEVSLPGATVVKLRDLDHLLQLLQVGEVNRHAANTKLNTESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELPGDNH 156 (267)
Q Consensus 77 ~g~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~~~~~~~ssrsH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (267)
.| ++++|+++++|.|++|+..+|+.|.++|....+..|..|||||+||+|+|.+....
T Consensus 160 ~~-~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~--------------------- 217 (325)
T cd01369 160 RG-VYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVE--------------------- 217 (325)
T ss_pred CC-EEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecC---------------------
Confidence 55 89999999999999999999999999999999999999999999999999875321
Q ss_pred CCceeeeeEEEEECCCCccccccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCCCchhhHhhHHhcCCCCeEE
Q 024439 157 VPLVRKSKLLIVDLAGSERIDKSGSEGPLLEEAKFINLSLSSLGKCINALAENS-PHIPTRDSKLTRLLRDSFGGSARTS 235 (267)
Q Consensus 157 ~~~~~~s~l~fvDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~~l~~~~-~~ipyr~SkLT~lL~~~l~g~~~~~ 235 (267)
.+....|+|+||||||+|+..+.+..+.+.+|+..||+||.+|++||.+|++++ .++|||+|+||+||+|+|+|+|+++
T Consensus 218 ~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~~~vpyR~S~LT~lL~~~L~g~s~t~ 297 (325)
T cd01369 218 TGSKKRGKLFLVDLAGSEKVSKTGAEGQTLEEAKKINKSLSALGNVINALTDGKSTHIPYRDSKLTRILQDSLGGNSRTT 297 (325)
T ss_pred CCCEEEEEEEEEECCCCCcccccCCcchhHHHHHHHhHHHHHHHHHHHHHHcCCCCcCCCccCHHHHHHHHhcCCCCeEE
Confidence 123578999999999999999999999999999999999999999999999987 8999999999999999999999999
Q ss_pred EEEEeCCCCCChHHHHHHhHHHHHhhhh
Q 024439 236 LIITVGPSARNHAETTSTIMFGQRGSIR 263 (267)
Q Consensus 236 ~I~~vsp~~~~~~eTl~TL~f~~r~~~i 263 (267)
||+||+|...+++||++||+||+|+++|
T Consensus 298 ~I~~vsp~~~~~~eTl~TL~~a~r~~~i 325 (325)
T cd01369 298 LIICCSPSSYNESETLSTLRFGARAKTI 325 (325)
T ss_pred EEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999986
No 13
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=3.8e-63 Score=436.02 Aligned_cols=233 Identities=38% Similarity=0.589 Sum_probs=217.7
Q ss_pred CcccCCccCccccccccCCCCCCCcChHHHHHHHHHHhcccC--CCeEEEEEEEEecCceeecCCCCCCCcCcccCCCCC
Q 024439 1 MAYGQTGTGKTYTLGRLGKDDASERGIMVRALEDIISSMSVT--SDSVEVSYLQLYMESIQDLLAPEKVNIPINEDPKTG 78 (267)
Q Consensus 1 ~ayG~tgSGKT~Tl~G~~~~~~~~~Gli~r~~~~lf~~~~~~--~~~v~~S~~EIy~e~v~DLL~~~~~~~~i~~~~~~g 78 (267)
||||++||||||||+| +..++|||||++++||+.+... .+.|.+||+|||+|+++|||++....+.+++++. |
T Consensus 85 ~ayG~tgSGKTyTm~G----~~~~~Glipr~~~~Lf~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~l~i~~~~~-~ 159 (319)
T cd01376 85 FAYGSTGAGKTHTMLG----DPNEPGLIPRTLSDLLRMGRKQAWTGAFSMSYYEIYNEKVYDLLEPAKKELPIREDKD-G 159 (319)
T ss_pred EEECCCCCCCcEEEeC----CcCccchHHHHHHHHHHHHhhccccceEEEEEEEEECCEeeEccCCCCCCceEEEcCC-C
Confidence 6999999999999966 3458899999999999987665 5789999999999999999999888899999875 5
Q ss_pred CccCCCCeEEEeCCHHHHHHHHHHHhhccccccCCCcCCCCCccceEEEEEEeeeeccccccccccccccccCCCCCCCC
Q 024439 79 EVSLPGATVVKLRDLDHLLQLLQVGEVNRHAANTKLNTESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELPGDNHVP 158 (267)
Q Consensus 79 ~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~~~~~~~ssrsH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (267)
.+++.|+++++|.|++|+.+++..|.++|....+..|..|||||+||+|++.+....
T Consensus 160 ~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~----------------------- 216 (319)
T cd01376 160 NILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPASN----------------------- 216 (319)
T ss_pred CEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEECCC-----------------------
Confidence 689999999999999999999999999999999999999999999999999876321
Q ss_pred ceeeeeEEEEECCCCccccccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhHhhHHhcCCCCeEEEEE
Q 024439 159 LVRKSKLLIVDLAGSERIDKSGSEGPLLEEAKFINLSLSSLGKCINALAENSPHIPTRDSKLTRLLRDSFGGSARTSLII 238 (267)
Q Consensus 159 ~~~~s~l~fvDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~~l~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~I~ 238 (267)
....|+|+||||||+|+..+.+..+.+.+|+..||+||.+|++||.+|+.+..++|||+|+||++|+|+|+|+|+|+||+
T Consensus 217 ~~~~s~l~~VDLAGsE~~~~~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~~~~ipyr~S~LT~lL~~~L~g~s~t~~i~ 296 (319)
T cd01376 217 IQLEGKLNLIDLAGSEDNRRTGNEGIRLKESAAINSSLFVLSKVVDALNKGLPRIPYRESKLTRLLQDSLGGGSRCIMVA 296 (319)
T ss_pred ceEEEEEEEEECCCCCcccccCCccchhhhhhhhhhhHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhcCCCccEEEEE
Confidence 24689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCChHHHHHHhHHHHHhh
Q 024439 239 TVGPSARNHAETTSTIMFGQRGS 261 (267)
Q Consensus 239 ~vsp~~~~~~eTl~TL~f~~r~~ 261 (267)
||+|...+++||++||+||+|++
T Consensus 297 ~vsp~~~~~~eTl~TL~fa~r~~ 319 (319)
T cd01376 297 NIAPERSFYQDTLSTLNFASRSK 319 (319)
T ss_pred EeCCchhhHHHHHHHHHHHHhhC
Confidence 99999999999999999999986
No 14
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=6.1e-63 Score=437.06 Aligned_cols=240 Identities=42% Similarity=0.634 Sum_probs=218.5
Q ss_pred CcccCCccCccccccccCCCCCCCcChHHHHHHHHHHhcccC---CCeEEEEEEEEecCceeecCCCCC------CCcCc
Q 024439 1 MAYGQTGTGKTYTLGRLGKDDASERGIMVRALEDIISSMSVT---SDSVEVSYLQLYMESIQDLLAPEK------VNIPI 71 (267)
Q Consensus 1 ~ayG~tgSGKT~Tl~G~~~~~~~~~Gli~r~~~~lf~~~~~~---~~~v~~S~~EIy~e~v~DLL~~~~------~~~~i 71 (267)
||||++||||||||+|.. .+..++|||||++++||+.++.. .+.|++||+|||+|+++|||++.. ..+.+
T Consensus 85 ~ayG~tgSGKTyTm~G~~-~~~~~~Glipr~~~~lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~~~~~~l~i 163 (334)
T cd01375 85 FAYGQTGAGKTFTMTGGT-ESYKDRGLIPRALEQVFREVAMRATKTYTVHVSYLEIYNEQLYDLLGDTPEALESLPAVTI 163 (334)
T ss_pred eeecCCCCCCeEEccCCC-CcccCCchHHHHHHHHHHHHHhccCcceEEEEEEEEEECCEeecCCCCCccccccCCceEE
Confidence 799999999999998853 24567999999999999988654 468999999999999999999874 56888
Q ss_pred ccCCCCCCccCCCCeEEEeCCHHHHHHHHHHHhhccccccCCCcCCCCCccceEEEEEEeeeeccccccccccccccccC
Q 024439 72 NEDPKTGEVSLPGATVVKLRDLDHLLQLLQVGEVNRHAANTKLNTESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTEL 151 (267)
Q Consensus 72 ~~~~~~g~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~~~~~~~ssrsH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~ 151 (267)
++++. +.++++|+++++|.+++|++.+|..|..+|....+..|..|||||+||+|+|.+....
T Consensus 164 ~e~~~-~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~~~~~---------------- 226 (334)
T cd01375 164 LEDSE-QNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSRE---------------- 226 (334)
T ss_pred EEcCC-CCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEEEEEEecC----------------
Confidence 88886 4599999999999999999999999999999999999999999999999999886332
Q ss_pred CCCCCCCceeeeeEEEEECCCCccccccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCCCchhhHhhHHhcCC
Q 024439 152 PGDNHVPLVRKSKLLIVDLAGSERIDKSGSEGPLLEEAKFINLSLSSLGKCINALAENS-PHIPTRDSKLTRLLRDSFGG 230 (267)
Q Consensus 152 ~~~~~~~~~~~s~l~fvDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~~l~~~~-~~ipyr~SkLT~lL~~~l~g 230 (267)
+.......|+|+||||||+|+..+.+..+...+|+..||+||.+|++||.+|++++ .++|||+|+||++|+|+|+|
T Consensus 227 ---~~~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~vi~~l~~~~~~~ipyRdSkLT~lL~d~Lgg 303 (334)
T cd01375 227 ---AGSEVVRLSKLNLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEKARTHVPYRNSKLTHVLRDSLGG 303 (334)
T ss_pred ---CCCCceEEEEEEEEECCCCCccccccCchhhhhhhhhhhhhHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhcCC
Confidence 11224578999999999999999988889999999999999999999999999988 89999999999999999999
Q ss_pred CCeEEEEEEeCCCCCChHHHHHHhHHHHHhh
Q 024439 231 SARTSLIITVGPSARNHAETTSTIMFGQRGS 261 (267)
Q Consensus 231 ~~~~~~I~~vsp~~~~~~eTl~TL~f~~r~~ 261 (267)
+|+++||+||+|...+++||++||+||+|++
T Consensus 304 ~~~t~~I~~vsp~~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 304 NCKTVMLATIWVEPSNLDETLSTLRFAQRVA 334 (334)
T ss_pred CceEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999985
No 15
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=1.5e-62 Score=436.68 Aligned_cols=252 Identities=40% Similarity=0.603 Sum_probs=224.4
Q ss_pred CcccCCccCccccccccCC--CCCCCcChHHHHHHHHHHhcccCC----CeEEEEEEEEecCceeecCCCC---CCCcCc
Q 024439 1 MAYGQTGTGKTYTLGRLGK--DDASERGIMVRALEDIISSMSVTS----DSVEVSYLQLYMESIQDLLAPE---KVNIPI 71 (267)
Q Consensus 1 ~ayG~tgSGKT~Tl~G~~~--~~~~~~Gli~r~~~~lf~~~~~~~----~~v~~S~~EIy~e~v~DLL~~~---~~~~~i 71 (267)
||||++||||||||+|... ....++|||||++++||+.+.... +.|.+||+|||+|+++|||++. ...+.+
T Consensus 78 ~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~l~i 157 (341)
T cd01372 78 LAYGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKKDEPDFQLKVSFLELYNEEVRDLLSPSTSEKSPIQI 157 (341)
T ss_pred eeecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHHhccccceEEEEEEEEEeECCeeecCCCCcccCCCCceE
Confidence 7999999999999988533 246789999999999999987654 4899999999999999999986 467899
Q ss_pred ccCCCCCCccCCCCeEEEeCCHHHHHHHHHHHhhccccccCCCcCCCCCccceEEEEEEeeeeccccccccccccccccC
Q 024439 72 NEDPKTGEVSLPGATVVKLRDLDHLLQLLQVGEVNRHAANTKLNTESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTEL 151 (267)
Q Consensus 72 ~~~~~~g~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~~~~~~~ssrsH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~ 151 (267)
++++. |.+++.|+++++|.|++|++++|+.|.++|....+..|..|||||+||+|+|.+.........
T Consensus 158 ~e~~~-~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~----------- 225 (341)
T cd01372 158 REDSK-GNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAP----------- 225 (341)
T ss_pred EECCC-CCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCcccc-----------
Confidence 99886 459999999999999999999999999999999999999999999999999988754211000
Q ss_pred CCCCCCCceeeeeEEEEECCCCccccccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCC---CCCCCCCchhhHhhHHhc
Q 024439 152 PGDNHVPLVRKSKLLIVDLAGSERIDKSGSEGPLLEEAKFINLSLSSLGKCINALAENS---PHIPTRDSKLTRLLRDSF 228 (267)
Q Consensus 152 ~~~~~~~~~~~s~l~fvDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~~l~~~~---~~ipyr~SkLT~lL~~~l 228 (267)
...+.......|+|+||||||+|+..+.+..+.+.+|+..||+||.+|++||.+|+.++ .++|||+|+||+||+|+|
T Consensus 226 ~~~~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~al~~~~~~~~~ipyR~S~LT~lL~~~L 305 (341)
T cd01372 226 MSGDDKNSTLTSKFHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISALGDESKKGSHVPYRDSKLTRLLQDSL 305 (341)
T ss_pred ccccCCCceeeEEEEEEECCCCcccccccCchhHhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHhc
Confidence 01122335678999999999999999999999999999999999999999999999876 699999999999999999
Q ss_pred CCCCeEEEEEEeCCCCCChHHHHHHhHHHHHhhhhh
Q 024439 229 GGSARTSLIITVGPSARNHAETTSTIMFGQRGSIRI 264 (267)
Q Consensus 229 ~g~~~~~~I~~vsp~~~~~~eTl~TL~f~~r~~~i~ 264 (267)
||+++++||+||+|...+++||++||+||+|+++|+
T Consensus 306 gg~s~t~~I~~vsp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 306 GGNSHTLMIACVSPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred CCCceEEEEEEeCCChhhHHHHHHHHHHHHHhccCC
Confidence 999999999999999999999999999999999985
No 16
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=2.3e-62 Score=431.77 Aligned_cols=239 Identities=43% Similarity=0.638 Sum_probs=219.6
Q ss_pred CcccCCccCccccccccCCCCCCCcChHHHHHHHHHHhcccC---CCeEEEEEEEEecCceeecCCCCCCCcCcccCCCC
Q 024439 1 MAYGQTGTGKTYTLGRLGKDDASERGIMVRALEDIISSMSVT---SDSVEVSYLQLYMESIQDLLAPEKVNIPINEDPKT 77 (267)
Q Consensus 1 ~ayG~tgSGKT~Tl~G~~~~~~~~~Gli~r~~~~lf~~~~~~---~~~v~~S~~EIy~e~v~DLL~~~~~~~~i~~~~~~ 77 (267)
||||++||||||||+| +..++|||||++++||+.+... .+.|.+||+|||+|+++|||+|....+++++++..
T Consensus 78 ~ayG~tgSGKT~T~~G----~~~~~Gli~r~~~~lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~l~i~~~~~~ 153 (321)
T cd01374 78 FAYGQTSSGKTFTMSG----DEQEPGIIPLAVRDIFQRIQDTPDREFLLRVSYLEIYNEKIKDLLSPSPQELRIREDPNK 153 (321)
T ss_pred EeecCCCCCCceeccC----CCCCCchHHHHHHHHHHHHhcccCceEEEEEEEEEEEcCEeEEccCCCCCCceEEECCCC
Confidence 6999999999999965 3478899999999999988554 45899999999999999999999889999999885
Q ss_pred CCccCCCCeEEEeCCHHHHHHHHHHHhhccccccCCCcCCCCCccceEEEEEEeeeeccccccccccccccccCCCCCCC
Q 024439 78 GEVSLPGATVVKLRDLDHLLQLLQVGEVNRHAANTKLNTESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELPGDNHV 157 (267)
Q Consensus 78 g~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~~~~~~~ssrsH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (267)
| +++.|++++.|.|++|+.++|+.|.++|....+..|..|||||+||+|+|.+..... ...
T Consensus 154 ~-~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~------------------~~~ 214 (321)
T cd01374 154 G-VVVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGD------------------SES 214 (321)
T ss_pred C-EEeCCceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCC------------------CCC
Confidence 5 899999999999999999999999999999999999999999999999998864321 112
Q ss_pred CceeeeeEEEEECCCCccccccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCCCCchhhHhhHHhcCCCCeEE
Q 024439 158 PLVRKSKLLIVDLAGSERIDKSGSEGPLLEEAKFINLSLSSLGKCINALAENS--PHIPTRDSKLTRLLRDSFGGSARTS 235 (267)
Q Consensus 158 ~~~~~s~l~fvDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~~l~~~~--~~ipyr~SkLT~lL~~~l~g~~~~~ 235 (267)
.....|+|+||||||+|+..+.+ .+.+.+|+..||+||.+|++||.+|++++ .++|||+|+||+||+|+|+|+++++
T Consensus 215 ~~~~~s~l~~vDLAGsE~~~~~~-~~~~~~e~~~iN~Sl~~L~~vi~al~~~~~~~~vpyR~SkLT~lL~~~L~g~s~t~ 293 (321)
T cd01374 215 GTVRVSTLNLIDLAGSERASQTG-AGERRKEGSFINKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRILQPSLSGNARTA 293 (321)
T ss_pred CcEEEEEEEEEECCCCCccccCC-CCccccccchhhhHHHHHHHHHHHHHhcCCCCcCCCcCCHHHHHHHHhcCCCceEE
Confidence 34678999999999999998888 88899999999999999999999999985 8999999999999999999999999
Q ss_pred EEEEeCCCCCChHHHHHHhHHHHHhhhh
Q 024439 236 LIITVGPSARNHAETTSTIMFGQRGSIR 263 (267)
Q Consensus 236 ~I~~vsp~~~~~~eTl~TL~f~~r~~~i 263 (267)
||+||+|...+++||++||+||+|+++|
T Consensus 294 ~i~~vsp~~~~~~eTl~TL~~a~r~~~i 321 (321)
T cd01374 294 IICTISPASSHVEETLNTLKFASRAKKV 321 (321)
T ss_pred EEEEeCCccccHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999986
No 17
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=1.5e-62 Score=432.59 Aligned_cols=231 Identities=39% Similarity=0.558 Sum_probs=213.8
Q ss_pred CcccCCccCccccccccCCCCCCCcChHHHHHHHHHHhcccC--CCeEEEEEEEEecCceeecCCCCCCCcCcccCCCCC
Q 024439 1 MAYGQTGTGKTYTLGRLGKDDASERGIMVRALEDIISSMSVT--SDSVEVSYLQLYMESIQDLLAPEKVNIPINEDPKTG 78 (267)
Q Consensus 1 ~ayG~tgSGKT~Tl~G~~~~~~~~~Gli~r~~~~lf~~~~~~--~~~v~~S~~EIy~e~v~DLL~~~~~~~~i~~~~~~g 78 (267)
||||||||||||||+| +..++|||||++++||+.+... .+.|.+||+|||+|+++|||++ ...+.+++++. |
T Consensus 89 ~ayGqtGSGKTyTm~G----~~~~~Glipr~~~~lf~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~-~~~l~i~~~~~-~ 162 (322)
T cd01367 89 FAYGQTGSGKTYTMLG----DENQEGLYALAARDIFRLLAQPNDDLGVTVSFFEIYGGKLFDLLND-RKRLSVLEDGK-G 162 (322)
T ss_pred EeccCCCCCCceEecC----cCCcCccHHHHHHHHHHHHhccccccEEEEEEEeeecCchhhhccC-ccceeEEEcCC-C
Confidence 6999999999999966 4478899999999999998774 6799999999999999999998 56789999986 5
Q ss_pred CccCCCCeEEEeCCHHHHHHHHHHHhhccccccCCCcCCCCCccceEEEEEEeeeeccccccccccccccccCCCCCCCC
Q 024439 79 EVSLPGATVVKLRDLDHLLQLLQVGEVNRHAANTKLNTESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELPGDNHVP 158 (267)
Q Consensus 79 ~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~~~~~~~ssrsH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (267)
.+++.|+++++|.|++|+.++|+.|..+|....+..|..|||||+||+|++.+...
T Consensus 163 ~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~------------------------ 218 (322)
T cd01367 163 NVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKL------------------------ 218 (322)
T ss_pred CEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEEEecC------------------------
Confidence 59999999999999999999999999999999999999999999999999987532
Q ss_pred ceeeeeEEEEECCCCccccccC-CCchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhHhhHHhcCCCCeEEEE
Q 024439 159 LVRKSKLLIVDLAGSERIDKSG-SEGPLLEEAKFINLSLSSLGKCINALAENSPHIPTRDSKLTRLLRDSFGGSARTSLI 237 (267)
Q Consensus 159 ~~~~s~l~fvDLagse~~~~~~-~~~~~~~e~~~in~sl~~L~~vi~~l~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~I 237 (267)
....|+|+||||||+|+..... ..+.+.+|+..||+||.+|++||.+|++++.++|||+||||++|+|+|+|+|+++||
T Consensus 219 ~~~~s~l~~vDLAGsE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~~~~~iPyRdSkLT~lL~~~L~g~~~t~~I 298 (322)
T cd01367 219 NKLLGKLSFIDLAGSERGADTSEHDRQTRKEGAEINKSLLALKECIRALASNKAHVPFRGSKLTQVLRDSFIGNSKTVMI 298 (322)
T ss_pred CeeEEEEEEeecCCccccccccccchhhHHhHhHHhHHHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhhCCCCeEEEE
Confidence 2367999999999999987654 567889999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCChHHHHHHhHHHHHhh
Q 024439 238 ITVGPSARNHAETTSTIMFGQRGS 261 (267)
Q Consensus 238 ~~vsp~~~~~~eTl~TL~f~~r~~ 261 (267)
+||+|...+++||++||+||+|++
T Consensus 299 ~~vsp~~~~~~eTl~tL~fa~r~k 322 (322)
T cd01367 299 ATISPSASSCEHTLNTLRYADRVK 322 (322)
T ss_pred EEeCCchhhHHHHHHHHHHHHhhC
Confidence 999999999999999999999986
No 18
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=6e-64 Score=471.72 Aligned_cols=239 Identities=46% Similarity=0.690 Sum_probs=223.3
Q ss_pred CcccCCccCccccccccCCCCCCCcChHHHHHHHHHHhcccCC---CeEEEEEEEEecCceeecCCCCCCCcCcccCCCC
Q 024439 1 MAYGQTGTGKTYTLGRLGKDDASERGIMVRALEDIISSMSVTS---DSVEVSYLQLYMESIQDLLAPEKVNIPINEDPKT 77 (267)
Q Consensus 1 ~ayG~tgSGKT~Tl~G~~~~~~~~~Gli~r~~~~lf~~~~~~~---~~v~~S~~EIy~e~v~DLL~~~~~~~~i~~~~~~ 77 (267)
||||+||||||||| .|...+|||||+++.+||+.+.... +.|.|||+|||||.|+|||+|...++.+++|+..
T Consensus 91 FAYG~TgSGKTyTM----~G~~~~PGii~la~~dif~~I~~~~~r~f~v~vSYlEIYNE~I~DLL~~~~~~L~irED~~~ 166 (675)
T KOG0242|consen 91 FAYGQTGSGKTYTM----SGSEDDPGIIPLAMKDIFEKIDKSGEREFSVRVSYLEIYNERIRDLLNPDGGDLRLREDSEG 166 (675)
T ss_pred eeecCCCCCCceEE----eccCCCCCeeehHHHHHHHHHHhcCCceeEEEEEEEEEeccccccccCCCCCCceEeEcCCC
Confidence 89999999999999 4467789999999999999987765 7899999999999999999999999999999986
Q ss_pred CCccCCCCeEEEeCCHHHHHHHHHHHhhccccccCCCcCCCCCccceEEEEEEeeeeccccccccccccccccCCCCCCC
Q 024439 78 GEVSLPGATVVKLRDLDHLLQLLQVGEVNRHAANTKLNTESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELPGDNHV 157 (267)
Q Consensus 78 g~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~~~~~~~ssrsH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (267)
| ++|.||++..|.|++++..+|..|..+|+++.|.+|..|||||+||+|.+.+..... .
T Consensus 167 g-i~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~-----------------~--- 225 (675)
T KOG0242|consen 167 G-IVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVESRGREA-----------------S--- 225 (675)
T ss_pred C-EEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEEeccccc-----------------c---
Confidence 5 999999999999999999999999999999999999999999999999998763321 0
Q ss_pred CceeeeeEEEEECCCCccccccCCCchhHHHHHHHHHHHHHHHHHHHHHhcC--CCCCCCCCchhhHhhHHhcCCCCeEE
Q 024439 158 PLVRKSKLLIVDLAGSERIDKSGSEGPLLEEAKFINLSLSSLGKCINALAEN--SPHIPTRDSKLTRLLRDSFGGSARTS 235 (267)
Q Consensus 158 ~~~~~s~l~fvDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~~l~~~--~~~ipyr~SkLT~lL~~~l~g~~~~~ 235 (267)
. +.++|.||||||||+..++.+.|.+.+|+.+||+||.+|++||.+|+++ ..|||||||||||+||++|||+++|.
T Consensus 226 -~-~~s~L~lIDLAGSERas~T~~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~~~~hipYRDSKLTRiLq~sLgGn~rt~ 303 (675)
T KOG0242|consen 226 -S-RVSKLNLIDLAGSERASRTGNEGVRLKEGAHINRSLLALGTVINKLSEGKRPRHIPYRDSKLTRLLQDSLGGNARTA 303 (675)
T ss_pred -c-hhheehhhhhhhhhhhhhhhccceeccccchhhHHHHHHHHHHHHHccccccCCCCccccHHHHhchhhcCCCccEE
Confidence 1 5689999999999999999999999999999999999999999999987 45899999999999999999999999
Q ss_pred EEEEeCCCCCChHHHHHHhHHHHHhhhhhcc
Q 024439 236 LIITVGPSARNHAETTSTIMFGQRGSIRISV 266 (267)
Q Consensus 236 ~I~~vsp~~~~~~eTl~TL~f~~r~~~i~~~ 266 (267)
+||||+|...+++||.+||+||+||++|.+.
T Consensus 304 ~I~tisp~~~~~~eT~nTL~fAsrak~i~~~ 334 (675)
T KOG0242|consen 304 IIATISPSSSHYEETKNTLKFASRAKEITTK 334 (675)
T ss_pred EEEEeCchhhHHHHHHHHHHHHHHhhhcccc
Confidence 9999999999999999999999999999875
No 19
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=2.5e-61 Score=426.90 Aligned_cols=239 Identities=41% Similarity=0.607 Sum_probs=221.4
Q ss_pred CcccCCccCccccccccCCCCCCCcChHHHHHHHHHHhcccC-----CCeEEEEEEEEecCceeecCCCC---CCCcCcc
Q 024439 1 MAYGQTGTGKTYTLGRLGKDDASERGIMVRALEDIISSMSVT-----SDSVEVSYLQLYMESIQDLLAPE---KVNIPIN 72 (267)
Q Consensus 1 ~ayG~tgSGKT~Tl~G~~~~~~~~~Gli~r~~~~lf~~~~~~-----~~~v~~S~~EIy~e~v~DLL~~~---~~~~~i~ 72 (267)
||||++||||||||+| ...++|||||++++||+.+... .+.|.+||+|||+|+++|||++. ...+.++
T Consensus 82 ~ayG~tgSGKT~tl~G----~~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~~l~i~ 157 (329)
T cd01366 82 FAYGQTGSGKTYTMEG----PPENPGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKPAPKKKLEIK 157 (329)
T ss_pred EEeCCCCCCCcEEecC----CCCCCCcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCcCCCCceEEE
Confidence 6999999999999966 4478899999999999987654 34799999999999999999986 6788999
Q ss_pred cCCCCCCccCCCCeEEEeCCHHHHHHHHHHHhhccccccCCCcCCCCCccceEEEEEEeeeeccccccccccccccccCC
Q 024439 73 EDPKTGEVSLPGATVVKLRDLDHLLQLLQVGEVNRHAANTKLNTESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELP 152 (267)
Q Consensus 73 ~~~~~g~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~~~~~~~ssrsH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~~ 152 (267)
+++. |.++++|+++++|.|++|+.+++..|.++|....+..|..|||||+||+|+|.+....
T Consensus 158 ~~~~-~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~----------------- 219 (329)
T cd01366 158 HDSK-GETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQ----------------- 219 (329)
T ss_pred ECCC-CCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcCC-----------------
Confidence 9984 6699999999999999999999999999999999999999999999999999876331
Q ss_pred CCCCCCceeeeeEEEEECCCCccccccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhHhhHHhcCCCC
Q 024439 153 GDNHVPLVRKSKLLIVDLAGSERIDKSGSEGPLLEEAKFINLSLSSLGKCINALAENSPHIPTRDSKLTRLLRDSFGGSA 232 (267)
Q Consensus 153 ~~~~~~~~~~s~l~fvDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~~l~~~~~~ipyr~SkLT~lL~~~l~g~~ 232 (267)
.+....|+|+||||||+|+..+.+..+.+.+|+..||+||.+|++||.+|+.+..++|||+|+||++|+|+|+|++
T Consensus 220 ----~~~~~~s~l~~VDLaGsE~~~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~~~~~ipyr~S~LT~lL~~~l~g~~ 295 (329)
T cd01366 220 ----TGEQTRGKLNLVDLAGSERLKKSGATGDRLKEAQAINKSLSALGDVISALRSKDSHVPYRNSKLTYLLQDSLGGNS 295 (329)
T ss_pred ----CCcEEEEEEEEEECCCCcccccccccchhhHhHhhhhhHHHHHHHHHHHHhcCCCcCCCcccHhHHHHHHhcCCCc
Confidence 1245789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEeCCCCCChHHHHHHhHHHHHhhhhhc
Q 024439 233 RTSLIITVGPSARNHAETTSTIMFGQRGSIRIS 265 (267)
Q Consensus 233 ~~~~I~~vsp~~~~~~eTl~TL~f~~r~~~i~~ 265 (267)
+++||+||+|...+++||++||+||+|+++|+|
T Consensus 296 ~t~~i~~vsp~~~~~~etl~tL~~a~~~~~i~~ 328 (329)
T cd01366 296 KTLMFVNISPLESNLSETLCSLRFASRVRSVEL 328 (329)
T ss_pred eEEEEEEeCCchhhHHHHHHHHHHHHHhhcccC
Confidence 999999999999999999999999999999976
No 20
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=1.1e-61 Score=430.42 Aligned_cols=244 Identities=47% Similarity=0.699 Sum_probs=220.5
Q ss_pred CcccCCccCccccccccCCCCCCCcChHHHHHHHHHHhcccC------CCeEEEEEEEEecCceeecCCCC----CCCcC
Q 024439 1 MAYGQTGTGKTYTLGRLGKDDASERGIMVRALEDIISSMSVT------SDSVEVSYLQLYMESIQDLLAPE----KVNIP 70 (267)
Q Consensus 1 ~ayG~tgSGKT~Tl~G~~~~~~~~~Gli~r~~~~lf~~~~~~------~~~v~~S~~EIy~e~v~DLL~~~----~~~~~ 70 (267)
||||++||||||||+|. ....++|||||++++||..+... .+.|++||+|||+|+|+|||++. ...+.
T Consensus 79 ~ayG~tgSGKT~Tm~G~--~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~l~ 156 (335)
T PF00225_consen 79 FAYGQTGSGKTYTMFGS--NDPSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNSKSRKPLK 156 (335)
T ss_dssp EEEESTTSSHHHHHTBS--TSTTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTSSSTTSEBE
T ss_pred Eeecccccccccccccc--ccccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCccccccccccc
Confidence 69999999999999774 44778999999999999998653 46899999999999999999997 35689
Q ss_pred cccCCCCCCccCCCCeEEEeCCHHHHHHHHHHHhhccccccCCCcCCCCCccceEEEEEEeeeecccccccccccccccc
Q 024439 71 INEDPKTGEVSLPGATVVKLRDLDHLLQLLQVGEVNRHAANTKLNTESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTE 150 (267)
Q Consensus 71 i~~~~~~g~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~~~~~~~ssrsH~i~~i~v~~~~~~~~~~~~~~~~~~~~~ 150 (267)
+++++..|.++++|+++++|.+++|+..+|..|.++|....+..|..|||||+||+|+|.+........
T Consensus 157 i~~~~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~----------- 225 (335)
T PF00225_consen 157 IREDSNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPSDD----------- 225 (335)
T ss_dssp EEEETTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTTTE-----------
T ss_pred eeeccccccceeeccccccccccccccccccchhhcccccccccccccccccccccccccccccccccc-----------
Confidence 999988778999999999999999999999999999999999999999999999999998874432110
Q ss_pred CCCCCCCCceeeeeEEEEECCCCccccccCC-CchhHHHHHHHHHHHHHHHHHHHHHhcC--CCCCCCCCchhhHhhHHh
Q 024439 151 LPGDNHVPLVRKSKLLIVDLAGSERIDKSGS-EGPLLEEAKFINLSLSSLGKCINALAEN--SPHIPTRDSKLTRLLRDS 227 (267)
Q Consensus 151 ~~~~~~~~~~~~s~l~fvDLagse~~~~~~~-~~~~~~e~~~in~sl~~L~~vi~~l~~~--~~~ipyr~SkLT~lL~~~ 227 (267)
......|+|+||||||+|+..+... .+.+.+|+..||+||.+|++||.+|+++ ..++|||+|+||+||+|+
T Consensus 226 ------~~~~~~s~l~~vDLaGsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~~~~~~vpyr~SkLT~lL~d~ 299 (335)
T PF00225_consen 226 ------EESVKHSRLTFVDLAGSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQGSKQSHVPYRDSKLTRLLKDS 299 (335)
T ss_dssp ------EEEEEEEEEEEEEEEESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSTSSSCGGGSHHHHHTGGG
T ss_pred ------ccceeecceeeeecccccccccccccccccccccceecchhhhhhhhHhhhhccccchhhhhhcccccceeccc
Confidence 0125789999999999999888886 4778999999999999999999999999 889999999999999999
Q ss_pred cCCCCeEEEEEEeCCCCCChHHHHHHhHHHHHhhhh
Q 024439 228 FGGSARTSLIITVGPSARNHAETTSTIMFGQRGSIR 263 (267)
Q Consensus 228 l~g~~~~~~I~~vsp~~~~~~eTl~TL~f~~r~~~i 263 (267)
|+|+|+++||+||+|...+++||++||+||+++++|
T Consensus 300 l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 300 LGGNSKTILIVCVSPSSEDYEETLSTLRFASRAREI 335 (335)
T ss_dssp TSSSSEEEEEEEE-SBGGGHHHHHHHHHHHHHHTTE
T ss_pred ccccccceeEEEcCCccccHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999986
No 21
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=3.8e-59 Score=414.15 Aligned_cols=242 Identities=46% Similarity=0.673 Sum_probs=222.9
Q ss_pred CcccCCccCccccccccCCCCCCCcChHHHHHHHHHHhcccC----CCeEEEEEEEEecCceeecCCCCCCCcCcccCCC
Q 024439 1 MAYGQTGTGKTYTLGRLGKDDASERGIMVRALEDIISSMSVT----SDSVEVSYLQLYMESIQDLLAPEKVNIPINEDPK 76 (267)
Q Consensus 1 ~ayG~tgSGKT~Tl~G~~~~~~~~~Gli~r~~~~lf~~~~~~----~~~v~~S~~EIy~e~v~DLL~~~~~~~~i~~~~~ 76 (267)
||||++||||||||+| +.+++|||||++++||+.+... .+.|.+||+|||+|+++|||++.+..+.+++++.
T Consensus 84 ~~yG~tgSGKT~tl~G----~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~~~~l~i~~~~~ 159 (335)
T smart00129 84 FAYGQTGSGKTYTMSG----TPDSPGIIPRALKDLFEKIDKLEEGWQFQVKVSYLEIYNEKIRDLLNPSPKKLEIREDKK 159 (335)
T ss_pred EEeCCCCCCCceEecC----CCCCCCHHHHHHHHHHHHhhhcccCceEEEEEEEEEEECCEEEECcCCCCCCcEEEECCC
Confidence 6899999999999966 4567899999999999988654 4689999999999999999999988999999986
Q ss_pred CCCccCCCCeEEEeCCHHHHHHHHHHHhhccccccCCCcCCCCCccceEEEEEEeeeeccccccccccccccccCCCCCC
Q 024439 77 TGEVSLPGATVVKLRDLDHLLQLLQVGEVNRHAANTKLNTESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELPGDNH 156 (267)
Q Consensus 77 ~g~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~~~~~~~ssrsH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (267)
|.+++.|+++++|.|++|+.++++.+.++|...++..|..|||||+||+|++.+.... ..
T Consensus 160 -~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~-------------------~~ 219 (335)
T smart00129 160 -GGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKN-------------------SS 219 (335)
T ss_pred -CCEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecC-------------------CC
Confidence 5599999999999999999999999999999999999999999999999999875221 11
Q ss_pred CCceeeeeEEEEECCCCccccccCCCchhHHHHHHHHHHHHHHHHHHHHHhc--CCCCCCCCCchhhHhhHHhcCCCCeE
Q 024439 157 VPLVRKSKLLIVDLAGSERIDKSGSEGPLLEEAKFINLSLSSLGKCINALAE--NSPHIPTRDSKLTRLLRDSFGGSART 234 (267)
Q Consensus 157 ~~~~~~s~l~fvDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~~l~~--~~~~ipyr~SkLT~lL~~~l~g~~~~ 234 (267)
......|+|+||||||+|+..+.+..+.+.+|+..||+||.+|++|+.+|++ +..++|||+|+||+||+++|+|++++
T Consensus 220 ~~~~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~~~~~~~ip~r~S~LT~lL~~~L~g~~~~ 299 (335)
T smart00129 220 SGSGKASKLNLVDLAGSERASKTGAEGDRLKEAGNINKSLSALGNVINALADGQKSRHIPYRDSKLTRLLQDSLGGNSKT 299 (335)
T ss_pred CCCEEEEEEEEEECCCCCccccccChhHHHHhhchhhhHHHHHHHHHHHHHhcCCCCCCCCcCcHhHHHHHHHcCCCCeE
Confidence 2346789999999999999999999999999999999999999999999999 56699999999999999999999999
Q ss_pred EEEEEeCCCCCChHHHHHHhHHHHHhhhhhcc
Q 024439 235 SLIITVGPSARNHAETTSTIMFGQRGSIRISV 266 (267)
Q Consensus 235 ~~I~~vsp~~~~~~eTl~TL~f~~r~~~i~~~ 266 (267)
+||+||+|..++++||++||+||+++++|+|.
T Consensus 300 ~~i~~vsp~~~~~~eTl~tL~~a~~~~~i~~~ 331 (335)
T smart00129 300 LMIANISPSLSNLEETLSTLRFASRAKEIKNK 331 (335)
T ss_pred EEEEEcCCCccchHHHHHHHHHHHHHhhcccC
Confidence 99999999999999999999999999999985
No 22
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=5.5e-58 Score=405.74 Aligned_cols=237 Identities=48% Similarity=0.686 Sum_probs=219.0
Q ss_pred CcccCCccCccccccccCCCCCCCcChHHHHHHHHHHhcccCC-----CeEEEEEEEEecCceeecCCCC--CCCcCccc
Q 024439 1 MAYGQTGTGKTYTLGRLGKDDASERGIMVRALEDIISSMSVTS-----DSVEVSYLQLYMESIQDLLAPE--KVNIPINE 73 (267)
Q Consensus 1 ~ayG~tgSGKT~Tl~G~~~~~~~~~Gli~r~~~~lf~~~~~~~-----~~v~~S~~EIy~e~v~DLL~~~--~~~~~i~~ 73 (267)
||||++||||||||+| +..++|||||++++||+.+.... +.|.+||+|||+|+++|||++. ...+.+++
T Consensus 83 ~~yG~tgSGKT~tl~G----~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~~~l~i~~ 158 (328)
T cd00106 83 FAYGQTGSGKTYTMFG----SPKDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEPPSKPLSLRE 158 (328)
T ss_pred EEecCCCCCCeEEecC----CCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCCCCCCcEEEE
Confidence 6899999999999955 45789999999999999987654 6899999999999999999998 88999999
Q ss_pred CCCCCCccCCCCeEEEeCCHHHHHHHHHHHhhccccccCCCcCCCCCccceEEEEEEeeeeccccccccccccccccCCC
Q 024439 74 DPKTGEVSLPGATVVKLRDLDHLLQLLQVGEVNRHAANTKLNTESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELPG 153 (267)
Q Consensus 74 ~~~~g~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~~~~~~~ssrsH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~~~ 153 (267)
++. +.+++.|+++++|.|++|+.++++.|.++|....+..|..|||||+||+|+|.+.......
T Consensus 159 ~~~-~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~--------------- 222 (328)
T cd00106 159 DPK-GGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTNDG--------------- 222 (328)
T ss_pred cCC-CCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEecCCCC---------------
Confidence 987 4589999999999999999999999999999999999999999999999999887443210
Q ss_pred CCCCCceeeeeEEEEECCCCccccccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCCCCchhhHhhHHhcCCC
Q 024439 154 DNHVPLVRKSKLLIVDLAGSERIDKSGSEGPLLEEAKFINLSLSSLGKCINALAENS--PHIPTRDSKLTRLLRDSFGGS 231 (267)
Q Consensus 154 ~~~~~~~~~s~l~fvDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~~l~~~~--~~ipyr~SkLT~lL~~~l~g~ 231 (267)
.....|+|+||||||+|+....+..+.+..|+..||+||.+|.+||.+|+.+. .++|||+|+||+||+|+|+|+
T Consensus 223 ----~~~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~vl~~l~~~~~~~~ip~r~SkLT~lL~~~l~g~ 298 (328)
T cd00106 223 ----RSIKSSKLNLVDLAGSERAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQKKKHIPYRDSKLTRLLQDSLGGN 298 (328)
T ss_pred ----ccEEEEEEEEEECCCCCcccccCCchhhhHhHHhhhhhHHHHHHHHHHHHhcCCCCcCCCcCcHHHHHHHHhcCCC
Confidence 13578999999999999999988899999999999999999999999999988 899999999999999999999
Q ss_pred CeEEEEEEeCCCCCChHHHHHHhHHHHHhh
Q 024439 232 ARTSLIITVGPSARNHAETTSTIMFGQRGS 261 (267)
Q Consensus 232 ~~~~~I~~vsp~~~~~~eTl~TL~f~~r~~ 261 (267)
++++||+||+|..++++||++||+||+|++
T Consensus 299 ~~t~~I~~vsp~~~~~~eTl~tL~~a~r~~ 328 (328)
T cd00106 299 SKTLMIANISPSSENYDETLSTLRFASRAK 328 (328)
T ss_pred CeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999985
No 23
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=9.2e-59 Score=411.97 Aligned_cols=238 Identities=34% Similarity=0.520 Sum_probs=216.5
Q ss_pred CcccCCccCccccccccCC--CCCCCcChHHHHHHHHHHhcccCC-----CeEEEEEEEEecCceeecCCCCCCCcCccc
Q 024439 1 MAYGQTGTGKTYTLGRLGK--DDASERGIMVRALEDIISSMSVTS-----DSVEVSYLQLYMESIQDLLAPEKVNIPINE 73 (267)
Q Consensus 1 ~ayG~tgSGKT~Tl~G~~~--~~~~~~Gli~r~~~~lf~~~~~~~-----~~v~~S~~EIy~e~v~DLL~~~~~~~~i~~ 73 (267)
||||||||||||||+|... ...-..||..++.+++|..+..-. ..|++||+|||+.+|||||++ +..+.+.+
T Consensus 296 FAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKvfDLL~~-k~KLrvLE 374 (676)
T KOG0246|consen 296 FAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGKVYDLLND-KKKLRVLE 374 (676)
T ss_pred eeeccCCCCceeecccccCcccccccccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcchhhhhcc-ccceEEee
Confidence 7999999999999988433 344567999999999999887643 489999999999999999998 67778888
Q ss_pred CCCCCCccCCCCeEEEeCCHHHHHHHHHHHhhccccccCCCcCCCCCccceEEEEEEeeeeccccccccccccccccCCC
Q 024439 74 DPKTGEVSLPGATVVKLRDLDHLLQLLQVGEVNRHAANTKLNTESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELPG 153 (267)
Q Consensus 74 ~~~~g~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~~~~~~~ssrsH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~~~ 153 (267)
|.+ +.++|-||++.+|.+.+|++.+|+.|...|+.+.|..|..|||||+||+|.+....
T Consensus 375 Dg~-QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHAvfQIilr~~~-------------------- 433 (676)
T KOG0246|consen 375 DGN-QQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHAVFQIILRKHG-------------------- 433 (676)
T ss_pred cCC-ceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCcccccccceeEeeeeecCC--------------------
Confidence 875 67999999999999999999999999999999999999999999999999986531
Q ss_pred CCCCCceeeeeEEEEECCCCcc-ccccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhHhhHHhcCC-C
Q 024439 154 DNHVPLVRKSKLLIVDLAGSER-IDKSGSEGPLLEEAKFINLSLSSLGKCINALAENSPHIPTRDSKLTRLLRDSFGG-S 231 (267)
Q Consensus 154 ~~~~~~~~~s~l~fvDLagse~-~~~~~~~~~~~~e~~~in~sl~~L~~vi~~l~~~~~~ipyr~SkLT~lL~~~l~g-~ 231 (267)
+....+++.||||||+|| .+.+.+..+...|+..||+||.+|..||++|.+++.|+|||.||||.+|+|+|-| +
T Consensus 434 ----~~k~hGKfSlIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~nk~H~PFR~SKLTqVLRDSFIGen 509 (676)
T KOG0246|consen 434 ----EFKLHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKSHLPFRGSKLTQVLRDSFIGEN 509 (676)
T ss_pred ----cceeEeEEEEEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhHHHHHHHhhcCCC
Confidence 124689999999999999 5667788888999999999999999999999999999999999999999999988 9
Q ss_pred CeEEEEEEeCCCCCChHHHHHHhHHHHHhhhhh
Q 024439 232 ARTSLIITVGPSARNHAETTSTIMFGQRGSIRI 264 (267)
Q Consensus 232 ~~~~~I~~vsp~~~~~~eTl~TL~f~~r~~~i~ 264 (267)
++|+||+||||.....+.||+||+||+|++++.
T Consensus 510 SrTcMIA~ISPg~~ScEhTLNTLRYAdRVKeLs 542 (676)
T KOG0246|consen 510 SRTCMIATISPGISSCEHTLNTLRYADRVKELS 542 (676)
T ss_pred CceEEEEEeCCCcchhhhhHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999864
No 24
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.8e-59 Score=431.80 Aligned_cols=244 Identities=37% Similarity=0.584 Sum_probs=222.8
Q ss_pred CcccCCccCccccccccCCCCCCCcChHHHHHHHHHHhcccC-----CCeEEEEEEEEecCceeecCCCCC--CCcCccc
Q 024439 1 MAYGQTGTGKTYTLGRLGKDDASERGIMVRALEDIISSMSVT-----SDSVEVSYLQLYMESIQDLLAPEK--VNIPINE 73 (267)
Q Consensus 1 ~ayG~tgSGKT~Tl~G~~~~~~~~~Gli~r~~~~lf~~~~~~-----~~~v~~S~~EIy~e~v~DLL~~~~--~~~~i~~ 73 (267)
||||||||||||||. |..+.+|||||+++.||..+... .++|.+||+|||||+++|||+|+. ..+.+++
T Consensus 98 faYGQtGsGKsYsmm----Gt~~QpGiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv~DLLdPk~ssqtlkVre 173 (1714)
T KOG0241|consen 98 FAYGQTGSGKSYSMM----GTAEQPGIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKVRDLLDPKGSSQTLKVRE 173 (1714)
T ss_pred EEecccCCCceeEee----ccCCCCCchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcchhhhhCCCCCcceeEEee
Confidence 799999999999994 46778999999999999998654 358999999999999999999964 4689999
Q ss_pred CCCCCCccCCCCeEEEeCCHHHHHHHHHHHhhccccccCCCcCCCCCccceEEEEEEeeeeccccccccccccccccCCC
Q 024439 74 DPKTGEVSLPGATVVKLRDLDHLLQLLQVGEVNRHAANTKLNTESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELPG 153 (267)
Q Consensus 74 ~~~~g~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~~~~~~~ssrsH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~~~ 153 (267)
+...| .++.||++..|.|++|+-.++..|.+.|+.+.+++|..|+|||+||.|.|.|.-.+...
T Consensus 174 hsvlG-p~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHaVFslvvtQ~l~D~kt--------------- 237 (1714)
T KOG0241|consen 174 HSVLG-PYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHAVFSLVVTQTLYDLKT--------------- 237 (1714)
T ss_pred ccccc-ccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccceeEEEEEeeEEecccc---------------
Confidence 99999 78999999999999999999999999999999999999999999999999887443211
Q ss_pred CCCCCceeeeeEEEEECCCCccccccCCCchhHHHHHHHHHHHHHHHHHHHHHhcC------CCCCCCCCchhhHhhHHh
Q 024439 154 DNHVPLVRKSKLLIVDLAGSERIDKSGSEGPLLEEAKFINLSLSSLGKCINALAEN------SPHIPTRDSKLTRLLRDS 227 (267)
Q Consensus 154 ~~~~~~~~~s~l~fvDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~~l~~~------~~~ipyr~SkLT~lL~~~ 227 (267)
+...-+.|+|.+|||||+|+..+.+..+.+.+|+.+||+||.+|+.||.+|+.+ +++||||||.||+||+|.
T Consensus 238 --g~SgeKvsklslVDLAgserasktga~g~rlkegsNinkSLttLglVIsaLadq~n~kgkdKfvPYrDSVLTwLLkD~ 315 (1714)
T KOG0241|consen 238 --GHSGEKVSKLSLVDLAGSERASKTGAAGSRLKEGSNINKSLTTLGLVISALADQKNGKGKDKFVPYRDSVLTWLLKDN 315 (1714)
T ss_pred --CcchhheeeeeEEEeccccccccccchhhhhhhcCCcchhhHHHHHHHHHHHHhhcCCCccccccchhHHHHHHHHhh
Confidence 111236799999999999999999999999999999999999999999999864 348999999999999999
Q ss_pred cCCCCeEEEEEEeCCCCCChHHHHHHhHHHHHhhhhhcc
Q 024439 228 FGGSARTSLIITVGPSARNHAETTSTIMFGQRGSIRISV 266 (267)
Q Consensus 228 l~g~~~~~~I~~vsp~~~~~~eTl~TL~f~~r~~~i~~~ 266 (267)
|||||+|+||+||||+.++|+||++||+||+||++|+|+
T Consensus 316 LGGNsrTvMiatvSPaAdnyeeTlStLRYadrAkrIvN~ 354 (1714)
T KOG0241|consen 316 LGGNSRTVMIATVSPAADNYEETLSTLRYADRAKRIVNH 354 (1714)
T ss_pred cCCCceeEEEEEecccccchHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999996
No 25
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=100.00 E-value=5.4e-57 Score=423.21 Aligned_cols=238 Identities=41% Similarity=0.585 Sum_probs=219.9
Q ss_pred CcccCCccCccccccccCCCCCCCcChHHHHHHHHHHhccc----CCCeEEEEEEEEecCceeecCCCC--CCCcCcccC
Q 024439 1 MAYGQTGTGKTYTLGRLGKDDASERGIMVRALEDIISSMSV----TSDSVEVSYLQLYMESIQDLLAPE--KVNIPINED 74 (267)
Q Consensus 1 ~ayG~tgSGKT~Tl~G~~~~~~~~~Gli~r~~~~lf~~~~~----~~~~v~~S~~EIy~e~v~DLL~~~--~~~~~i~~~ 74 (267)
||||||||||||||.|+ .++++|||||++++||..+.. +.+.+.+||+|||||.++|||++. ...+.|+++
T Consensus 397 FAYGQTGSGKTyTM~G~---~~~~~Giipral~~lF~~~~~~~~g~~y~~~~s~~EIYNe~i~DlL~~~~~~~k~~I~~~ 473 (670)
T KOG0239|consen 397 FAYGQTGSGKTYTMSGP---TPEDPGIIPRALEKLFRTITSLKSGWKYDKTVSMLEIYNEAIRDLLSDESYVGKLEIVDD 473 (670)
T ss_pred EEecccCCCccccccCC---CcccCCccHHHHHHHHHHHHhhccCceEEeeeehhHHHHHHHHHhccccccccceeEEEc
Confidence 79999999999999664 778899999999999987754 356899999999999999999987 467888888
Q ss_pred CCCCCccCCCCeEEEeCCHHHHHHHHHHHhhccccccCCCcCCCCCccceEEEEEEeeeeccccccccccccccccCCCC
Q 024439 75 PKTGEVSLPGATVVKLRDLDHLLQLLQVGEVNRHAANTKLNTESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELPGD 154 (267)
Q Consensus 75 ~~~g~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~~~~~~~ssrsH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (267)
+. |...|.+++.+.|.+.+|+..+++.|..+|+.++|..|.+|||||+||+++|.....
T Consensus 474 ~~-~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~~~-------------------- 532 (670)
T KOG0239|consen 474 AE-GNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGINE-------------------- 532 (670)
T ss_pred CC-CceecccceEEecCCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEecccc--------------------
Confidence 76 459999999999999999999999999999999999999999999999999966422
Q ss_pred CCCCceeeeeEEEEECCCCccccccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhHhhHHhcCCCCeE
Q 024439 155 NHVPLVRKSKLLIVDLAGSERIDKSGSEGPLLEEAKFINLSLSSLGKCINALAENSPHIPTRDSKLTRLLRDSFGGSART 234 (267)
Q Consensus 155 ~~~~~~~~s~l~fvDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~~l~~~~~~ipyr~SkLT~lL~~~l~g~~~~ 234 (267)
..+....+.|+|||||||||..+++..+.+.+|..+||+||.+|+.||.+|+....|||||+||||+||+++|||+++|
T Consensus 533 -~t~~~~~g~l~LVDLAGSER~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~k~~HiPyRNSKLT~lLq~sLGG~sKT 611 (670)
T KOG0239|consen 533 -LTGIRVTGVLNLVDLAGSERVSKSGVTGERLKEAQNINKSLSALGDVISALASKRSHIPYRNSKLTQLLQDSLGGDSKT 611 (670)
T ss_pred -CcccccccceeEeecccCcccCcCCCchhhhHHHHHhchhhhhhHHHHHHHhhcCCCCcccccchHHHhHhhhCCccce
Confidence 1234567999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCCChHHHHHHhHHHHHhhhh
Q 024439 235 SLIITVGPSARNHAETTSTIMFGQRGSIR 263 (267)
Q Consensus 235 ~~I~~vsp~~~~~~eTl~TL~f~~r~~~i 263 (267)
+|+++|+|...++.||+++|+||+|++.+
T Consensus 612 Lmfv~isP~~~~~~Etl~sL~FA~rv~~~ 640 (670)
T KOG0239|consen 612 LMFVNISPAAAALFETLCSLRFATRVRSV 640 (670)
T ss_pred eeEEEeCccHHHHhhhhhccchHHHhhce
Confidence 99999999999999999999999999865
No 26
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.1e-55 Score=402.37 Aligned_cols=241 Identities=36% Similarity=0.554 Sum_probs=214.8
Q ss_pred CcccCCccCccccccccCCCCCCCcChHHHHHHHHHHhcccCC-------------------------------------
Q 024439 1 MAYGQTGTGKTYTLGRLGKDDASERGIMVRALEDIISSMSVTS------------------------------------- 43 (267)
Q Consensus 1 ~ayG~tgSGKT~Tl~G~~~~~~~~~Gli~r~~~~lf~~~~~~~------------------------------------- 43 (267)
|+||-||||||||| .|++.++||+||+++-||..+....
T Consensus 119 FTyGVTgSGKTYTm----~G~~~~~GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~~alL~lkr~~~~nd~~~ 194 (809)
T KOG0247|consen 119 FTYGVTGSGKTYTM----TGTPDRPGILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEEDALLQLKREAMLNDRKS 194 (809)
T ss_pred EEeeccCCCceEEe----ecCCCCCCchHHHHHHHHHHhhceeccCceeccccchHHHHHHHHHHHHhhhhhhccccccC
Confidence 79999999999999 4567889999999999998663311
Q ss_pred -------------------------------CeEEEEEEEEecCceeecCCCCCC-----C-cCcccCCCCCCccCCCCe
Q 024439 44 -------------------------------DSVEVSYLQLYMESIQDLLAPEKV-----N-IPINEDPKTGEVSLPGAT 86 (267)
Q Consensus 44 -------------------------------~~v~~S~~EIy~e~v~DLL~~~~~-----~-~~i~~~~~~g~~~i~~l~ 86 (267)
+.|+|||+|||||.+||||.+... . ..+++|. .|.++|+|++
T Consensus 195 ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q~~~~~~~ll~~d~-~~~~~Vkgl~ 273 (809)
T KOG0247|consen 195 TSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQGKLQKLKLLREDT-NGNMYVKGLT 273 (809)
T ss_pred cchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhccccccchhhhhhhhhhcc-CCCeeecccc
Confidence 039999999999999999987533 2 3344554 5889999999
Q ss_pred EEEeCCHHHHHHHHHHHhhccccccCCCcCCCCCccceEEEEEEeeeeccccccccccccccccCCCCCCCCceeeeeEE
Q 024439 87 VVKLRDLDHLLQLLQVGEVNRHAANTKLNTESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELPGDNHVPLVRKSKLL 166 (267)
Q Consensus 87 ~~~v~s~~e~~~~l~~~~~~R~~~~~~~~~~ssrsH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~ 166 (267)
+|+|.+.+||+++|+.|+++|+.++|..|..|||||+||+|.+.+..... ....+..|.|.
T Consensus 274 ~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~~~-------------------~s~~i~vSqls 334 (809)
T KOG0247|consen 274 EVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPRSQ-------------------DSNQITVSQLS 334 (809)
T ss_pred EEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeeccccc-------------------ccCceeEEeee
Confidence 99999999999999999999999999999999999999999999875431 12356889999
Q ss_pred EEECCCCccccccCCCchhHHHHHHHHHHHHHHHHHHHHHhcC-----CCCCCCCCchhhHhhHHhcCCCCeEEEEEEeC
Q 024439 167 IVDLAGSERIDKSGSEGPLLEEAKFINLSLSSLGKCINALAEN-----SPHIPTRDSKLTRLLRDSFGGSARTSLIITVG 241 (267)
Q Consensus 167 fvDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~~l~~~-----~~~ipyr~SkLT~lL~~~l~g~~~~~~I~~vs 241 (267)
|||||||||..+..+.|.+++|+.+||.||.+|++||.+|+++ +..+||||||||++++.+|.|..++.||.||+
T Consensus 335 LvDLAGSERt~rtq~sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlfq~~f~G~gki~MIV~vn 414 (809)
T KOG0247|consen 335 LVDLAGSERTNRTQNSGERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLFKNYFDGKGKIRMIVCVN 414 (809)
T ss_pred eeecccchhcccccchhHHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHHhcCCCCcEEEEEecC
Confidence 9999999999999999999999999999999999999999875 35899999999999999999999999999999
Q ss_pred CCCCChHHHHHHhHHHHHhhhhhc
Q 024439 242 PSARNHAETTSTIMFGQRGSIRIS 265 (267)
Q Consensus 242 p~~~~~~eTl~TL~f~~r~~~i~~ 265 (267)
|.+++|+|+++.|+||.-+.+|.+
T Consensus 415 p~~e~YdEnl~vlkFaeiaq~v~v 438 (809)
T KOG0247|consen 415 PKAEDYDENLNVLKFAEIAQEVEV 438 (809)
T ss_pred CchhhHHHHHHHHHHHHhcccccc
Confidence 999999999999999999988764
No 27
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.6e-53 Score=398.08 Aligned_cols=244 Identities=39% Similarity=0.579 Sum_probs=218.1
Q ss_pred CcccCCccCccccccccCCCCCCCcChHHHHHHHHHHhcccC---CCeEEEEEEEEecCceeecCCCCCC--CcCcccCC
Q 024439 1 MAYGQTGTGKTYTLGRLGKDDASERGIMVRALEDIISSMSVT---SDSVEVSYLQLYMESIQDLLAPEKV--NIPINEDP 75 (267)
Q Consensus 1 ~ayG~tgSGKT~Tl~G~~~~~~~~~Gli~r~~~~lf~~~~~~---~~~v~~S~~EIy~e~v~DLL~~~~~--~~~i~~~~ 75 (267)
+|||||||||||||++...+..++.|+|||++..+|..+... .+.|.+||+|+|++.|+|||.|... ++.+++
T Consensus 70 laygQtgsgkTytmgt~~~~~~~~~Gvipr~v~~~f~~i~~~~~~~f~i~vs~vely~e~v~dl~~~~~~~~~i~~~e-- 147 (913)
T KOG0244|consen 70 LAYGQTGSGKTYTMGTNDAPAQDTVGVIPRAVSTLFTRIGKTESFVFRITVSFVELYNEEVLDLLKPSRLKANIKLRE-- 147 (913)
T ss_pred eeecccCCCceeecccccccccccCCcCcchHHHHHHHHHhhhccceeeeeeeeeccchhhhhhcChhhhhhceeccc--
Confidence 589999999999997643344445799999999999998665 3689999999999999999997543 455555
Q ss_pred CCCCccCCCCeEEEeCCHHHHHHHHHHHhhccccccCCCcCCCCCccceEEEEEEeeeeccccccccccccccccCCCCC
Q 024439 76 KTGEVSLPGATVVKLRDLDHLLQLLQVGEVNRHAANTKLNTESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELPGDN 155 (267)
Q Consensus 76 ~~g~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~~~~~~~ssrsH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (267)
..|.+.+.+++++.|.+..+....|..|...|+.++|.+|..|||||+||++.+.+......
T Consensus 148 ~~g~it~~glte~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~~------------------ 209 (913)
T KOG0244|consen 148 PKGEITIRGLTEKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLSK------------------ 209 (913)
T ss_pred cCCceEEEeehHHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhhc------------------
Confidence 34779999999999999999999999999999999999999999999999999977422111
Q ss_pred CCCceeeeeEEEEECCCCccccccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCCCCchhhHhhHHhcCCCCe
Q 024439 156 HVPLVRKSKLLIVDLAGSERIDKSGSEGPLLEEAKFINLSLSSLGKCINALAENSP--HIPTRDSKLTRLLRDSFGGSAR 233 (267)
Q Consensus 156 ~~~~~~~s~l~fvDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~~l~~~~~--~ipyr~SkLT~lL~~~l~g~~~ 233 (267)
....+++|+||||||+|+..++...+.+++|+.+||.+|.+|++||.+|.+.+. |+|||+|+|||||+|+||||+.
T Consensus 210 --~s~~~sKlhlVDLAGSER~kkT~a~gdrlKEgInIN~gLL~LgnVIsaLg~~kk~~~vpyRdSkltrlLQdslgGns~ 287 (913)
T KOG0244|consen 210 --RSSFCSKLHLVDLAGSERVKKTKAEGDRLKEGININGGLLALGNVISALGEAKKGGEVPYRDSKLTRLLQDSLGGNSD 287 (913)
T ss_pred --cchhhhhhheeeccccccccccccchhhhhhccCcchHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhcCCcc
Confidence 124679999999999999999999999999999999999999999999998766 9999999999999999999999
Q ss_pred EEEEEEeCCCCCChHHHHHHhHHHHHhhhhhcc
Q 024439 234 TSLIITVGPSARNHAETTSTIMFGQRGSIRISV 266 (267)
Q Consensus 234 ~~~I~~vsp~~~~~~eTl~TL~f~~r~~~i~~~ 266 (267)
++||+||||+..+.+||++||+||.|+++|.|-
T Consensus 288 tlmiaCiSpadsn~~EtlnTl~ya~Rak~iknk 320 (913)
T KOG0244|consen 288 TLMIACISPADSNAQETLNTLRYADRAKQIKNK 320 (913)
T ss_pred eeeeeecChhhhhhhhHHHHHHHhhHHHHhccc
Confidence 999999999999999999999999999999873
No 28
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2e-50 Score=376.80 Aligned_cols=241 Identities=42% Similarity=0.633 Sum_probs=219.9
Q ss_pred CcccCCccCccccccccCCCCCCCcChHHHHHHHHHHhcccC----CCeEEEEEEEEecCceeecCCCCCCCcCcccCCC
Q 024439 1 MAYGQTGTGKTYTLGRLGKDDASERGIMVRALEDIISSMSVT----SDSVEVSYLQLYMESIQDLLAPEKVNIPINEDPK 76 (267)
Q Consensus 1 ~ayG~tgSGKT~Tl~G~~~~~~~~~Gli~r~~~~lf~~~~~~----~~~v~~S~~EIy~e~v~DLL~~~~~~~~i~~~~~ 76 (267)
|||||||||||||| .|...++||||+++.+||+.+... .+.|.+||+|||+|+++|||.+....+.++++..
T Consensus 94 fayGqTgsgKtyt~----~G~~~~~Gii~~~l~~lf~~l~~~~~~~~~~v~is~lEiYnEk~~DLl~~~~~~~~~~~~~~ 169 (568)
T COG5059 94 FAYGQTGSGKTYTM----SGTEEEPGIIPLSLKELFSKLEDLSMTKDFAVSISYLEIYNEKIYDLLSPNEESLNIREDSL 169 (568)
T ss_pred EEEcccCCCceeEe----ecCccccchHHHHHHHHHHHHHhcccCcceeeEeehhHHHhhHHHhhccCccccccccccCC
Confidence 79999999999999 445688999999999999987654 4689999999999999999999777667777776
Q ss_pred CCCccCCCCeEEEeCCHHHHHHHHHHHhhccccccCCCcCCCCCccceEEEEEEeeeeccccccccccccccccCCCCCC
Q 024439 77 TGEVSLPGATVVKLRDLDHLLQLLQVGEVNRHAANTKLNTESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELPGDNH 156 (267)
Q Consensus 77 ~g~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~~~~~~~ssrsH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (267)
.| +.+.++++..+.+.+|++.+|+++..+|+.+.+..|..|+|+|.+|++++.+......
T Consensus 170 ~~-v~v~~l~~~~~~s~ee~l~~l~~~~~nr~~~~te~n~~ssRshsi~~i~~~~~~~~~~------------------- 229 (568)
T COG5059 170 LG-VKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSG------------------- 229 (568)
T ss_pred Cc-eEeecceEEecCChHHHHHHHHHhhhhcccccchhccccccceEEEEEEEEEeccCcc-------------------
Confidence 44 9999999999999999999999999999999999999999999999999988643221
Q ss_pred CCceeeeeEEEEECCCCccccccCCCchhHHHHHHHHHHHHHHHHHHHHHhc--CCCCCCCCCchhhHhhHHhcCCCCeE
Q 024439 157 VPLVRKSKLLIVDLAGSERIDKSGSEGPLLEEAKFINLSLSSLGKCINALAE--NSPHIPTRDSKLTRLLRDSFGGSART 234 (267)
Q Consensus 157 ~~~~~~s~l~fvDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~~l~~--~~~~ipyr~SkLT~lL~~~l~g~~~~ 234 (267)
....+++.+|||||+|+.......+.+..|+..||+||.+|++||.+|.. +..|+|||+|+|||+|+++|||++++
T Consensus 230 --~~~~~~l~lvDLagSE~~~~~~~~~~r~~E~~~iN~sLl~Lg~vI~~L~~~~~~~~ipyReskLTRlLq~sLgG~~~~ 307 (568)
T COG5059 230 --TSETSKLSLVDLAGSERAARTGNRGTRLKEGASINKSLLTLGNVINALGDKKKSGHIPYRESKLTRLLQDSLGGNCNT 307 (568)
T ss_pred --ceecceEEEEeeccccccchhhcccchhhhhhhhHhhHHHHHHHHHHHhccccCCccchhhhHHHHHHHHhcCCCccE
Confidence 22337999999999999999999999999999999999999999999997 77899999999999999999999999
Q ss_pred EEEEEeCCCCCChHHHHHHhHHHHHhhhhhccC
Q 024439 235 SLIITVGPSARNHAETTSTIMFGQRGSIRISVV 267 (267)
Q Consensus 235 ~~I~~vsp~~~~~~eTl~TL~f~~r~~~i~~~~ 267 (267)
.+||||+|...++++|.+||+||.|++.|.|.+
T Consensus 308 ~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~ 340 (568)
T COG5059 308 RVICTISPSSNSFEETINTLKFASRAKSIKNKI 340 (568)
T ss_pred EEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcc
Confidence 999999999999999999999999999998864
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=1.4e-43 Score=289.13 Aligned_cols=159 Identities=46% Similarity=0.693 Sum_probs=145.0
Q ss_pred CcccCCccCccccccccCCCCCCCcChHHHHHHHHHHhcccCCCeEEEEEEEEecCceeecCCCCCCCcCcccCCCCCCc
Q 024439 1 MAYGQTGTGKTYTLGRLGKDDASERGIMVRALEDIISSMSVTSDSVEVSYLQLYMESIQDLLAPEKVNIPINEDPKTGEV 80 (267)
Q Consensus 1 ~ayG~tgSGKT~Tl~G~~~~~~~~~Gli~r~~~~lf~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~i~~~~~~g~~ 80 (267)
||||++||||||||+|. ..++|||||++++
T Consensus 28 ~~yG~tGsGKT~Tm~G~----~~~~Giip~~~~~---------------------------------------------- 57 (186)
T cd01363 28 FAYGQTGSGKTYTMEGK----REGAGIIPRTVTD---------------------------------------------- 57 (186)
T ss_pred EEECCCCCcceEecCCC----CCCCCcchHHHHH----------------------------------------------
Confidence 69999999999999663 4788999999988
Q ss_pred cCCCCeEEEeCCHHHHHHHHHHHhhccccccCCCcCCCCCccceEEEEEEeeeeccccccccccccccccCCCCCCCCce
Q 024439 81 SLPGATVVKLRDLDHLLQLLQVGEVNRHAANTKLNTESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELPGDNHVPLV 160 (267)
Q Consensus 81 ~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~~~~~~~ssrsH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (267)
+++++..|..+|..+.+..|..|||+|+||+|++.+..... ......
T Consensus 58 ---------------~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i~v~~~~~~~------------------~~~~~~ 104 (186)
T cd01363 58 ---------------VIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNALA------------------SATEQP 104 (186)
T ss_pred ---------------HHHHHhhccccccccccCCCCccCcccEEEEEEEEEeecCC------------------CCccce
Confidence 78899999999999999999999999999999998764321 112345
Q ss_pred eeeeEEEEECCCCccccccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchhhHhhHHhcCCCCeEEEEEEe
Q 024439 161 RKSKLLIVDLAGSERIDKSGSEGPLLEEAKFINLSLSSLGKCINALAENSPHIPTRDSKLTRLLRDSFGGSARTSLIITV 240 (267)
Q Consensus 161 ~~s~l~fvDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~~l~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~I~~v 240 (267)
..++|+||||||+|+.++.+..+.+.+|+..||+||.+|++||.+|++++.++|||+||||++|+|+|+|+|+++||+||
T Consensus 105 ~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~~~~vpyr~SkLT~lL~~~L~g~~~t~~i~~v 184 (186)
T cd01363 105 KVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISALAERDSHVPYRESKLTRLLQDSLGGNSRTLMVACI 184 (186)
T ss_pred eeeeEEEEEccccccccccCCchhhHHHHHHHhhHHHHHHHHHHHHhcCCCCCCCcccHHHHHHHHhcCCCCeEEEEEEe
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 024439 241 GP 242 (267)
Q Consensus 241 sp 242 (267)
+|
T Consensus 185 sP 186 (186)
T cd01363 185 SP 186 (186)
T ss_pred Cc
Confidence 98
No 30
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.64 E-value=0.031 Score=51.70 Aligned_cols=12 Identities=67% Similarity=0.889 Sum_probs=11.4
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
-||||||||.||
T Consensus 264 TGPTGSGKTTTL 275 (500)
T COG2804 264 TGPTGSGKTTTL 275 (500)
T ss_pred eCCCCCCHHHHH
Confidence 499999999999
No 31
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=94.24 E-value=0.029 Score=52.08 Aligned_cols=57 Identities=21% Similarity=0.333 Sum_probs=33.0
Q ss_pred ccCCccCcccccccc----CCC---CCCCcChHHHHHHHHHHhcccCCCeEEEEEEEEecCcee
Q 024439 3 YGQTGTGKTYTLGRL----GKD---DASERGIMVRALEDIISSMSVTSDSVEVSYLQLYMESIQ 59 (267)
Q Consensus 3 yG~tgSGKT~Tl~G~----~~~---~~~~~Gli~r~~~~lf~~~~~~~~~v~~S~~EIy~e~v~ 59 (267)
-|.|||||||||-.. +.. -..+.-|.-+...++-....+..-...+||+..|+-+.|
T Consensus 38 LGvTGSGKTfT~AnVI~~~~rPtLV~AhNKTLAaQLy~Efk~fFP~NaVEYFVSYYDYYQPEAY 101 (663)
T COG0556 38 LGVTGSGKTFTMANVIAKVQRPTLVLAHNKTLAAQLYSEFKEFFPENAVEYFVSYYDYYQPEAY 101 (663)
T ss_pred eeeccCCchhHHHHHHHHhCCCeEEEecchhHHHHHHHHHHHhCcCcceEEEeeeccccCcccc
Confidence 489999999999210 000 022334433333333333344445799999999987643
No 32
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=93.39 E-value=0.74 Score=38.98 Aligned_cols=52 Identities=13% Similarity=0.220 Sum_probs=32.4
Q ss_pred eCCHHHHHHHHHHHhhccccccCCCcCCCCCccceEEEEEEeeeeccccccccccccccccCCCCCCCCceeeeeEEEEE
Q 024439 90 LRDLDHLLQLLQVGEVNRHAANTKLNTESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELPGDNHVPLVRKSKLLIVD 169 (267)
Q Consensus 90 v~s~~e~~~~l~~~~~~R~~~~~~~~~~ssrsH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~fvD 169 (267)
+.+++++...+..+...- ... ...-|.-++.+++..- ..-.++|||
T Consensus 86 ~~~~~~v~~~i~~~~~~~-~~~-----~~~~s~~~i~l~i~~p----------------------------~~~~ltLID 131 (240)
T smart00053 86 FTDFDEVRNEIEAETDRV-TGT-----NKGISPVPINLRVYSP----------------------------HVLNLTLID 131 (240)
T ss_pred cCCHHHHHHHHHHHHHHh-cCC-----CCcccCcceEEEEeCC----------------------------CCCceEEEe
Confidence 467889888888765431 111 1223556666766331 234789999
Q ss_pred CCCCcc
Q 024439 170 LAGSER 175 (267)
Q Consensus 170 Lagse~ 175 (267)
|+|...
T Consensus 132 lPGl~~ 137 (240)
T smart00053 132 LPGITK 137 (240)
T ss_pred CCCccc
Confidence 999864
No 33
>PRK06620 hypothetical protein; Validated
Probab=88.73 E-value=0.13 Score=42.84 Aligned_cols=13 Identities=38% Similarity=0.626 Sum_probs=12.1
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
=||++||||||.+
T Consensus 49 l~Gp~G~GKThLl 61 (214)
T PRK06620 49 IKGPSSSGKTYLT 61 (214)
T ss_pred EECCCCCCHHHHH
Confidence 3899999999999
No 34
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=88.66 E-value=0.14 Score=44.62 Aligned_cols=13 Identities=54% Similarity=0.797 Sum_probs=11.8
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
.-||||||||+||
T Consensus 130 VTGpTGSGKSTTl 142 (353)
T COG2805 130 VTGPTGSGKSTTL 142 (353)
T ss_pred EeCCCCCcHHHHH
Confidence 3599999999999
No 35
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=88.63 E-value=0.13 Score=42.88 Aligned_cols=57 Identities=12% Similarity=0.242 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCchhhHhhHHhcCCCCeEEEEEEeCCCCCChHHH
Q 024439 193 NLSLSSLGKCINALAENSPHIPTRDSKLTRLLRDSFGGSARTSLIITVGPSARNHAET 250 (267)
Q Consensus 193 n~sl~~L~~vi~~l~~~~~~ipyr~SkLT~lL~~~l~g~~~~~~I~~vsp~~~~~~eT 250 (267)
......+.+.+..+.......+-....+...|.+++....++ .|.-+|--++...+.
T Consensus 164 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~i-~IiDLs~~~~~~~~~ 220 (229)
T PF01935_consen 164 SSTIRALLRRLERLFRRGSFFSSTPEDIIKLLLDYLNKPGKI-VIIDLSGVDEEVQDI 220 (229)
T ss_pred HHHHHHHHHHHHHHHhcccccccCcccHHHHhhhhcCCCCCE-EEEECCCCCHHHHHH
Confidence 334455555555555544333334456666777777666665 444666554444333
No 36
>PF13245 AAA_19: Part of AAA domain
Probab=88.19 E-value=0.15 Score=35.05 Aligned_cols=12 Identities=67% Similarity=0.855 Sum_probs=11.2
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
-|+.|||||+|+
T Consensus 16 ~g~pGtGKT~~~ 27 (76)
T PF13245_consen 16 QGPPGTGKTTTL 27 (76)
T ss_pred ECCCCCCHHHHH
Confidence 589999999999
No 37
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=88.12 E-value=0.43 Score=43.05 Aligned_cols=14 Identities=64% Similarity=0.997 Sum_probs=12.7
Q ss_pred CcccCCccCccccc
Q 024439 1 MAYGQTGTGKTYTL 14 (267)
Q Consensus 1 ~ayG~tgSGKT~Tl 14 (267)
+-||++|||||.|+
T Consensus 46 ~iyG~~GTGKT~~~ 59 (366)
T COG1474 46 IIYGPTGTGKTATV 59 (366)
T ss_pred EEECCCCCCHhHHH
Confidence 46999999999998
No 38
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=86.72 E-value=0.26 Score=41.74 Aligned_cols=92 Identities=18% Similarity=0.283 Sum_probs=51.3
Q ss_pred cccCCccCccccccccCCCCCCCcChHHHHHHHHHHhcccCCCeEEEEEEEEecCceeec------CCCCCCCcCcccCC
Q 024439 2 AYGQTGTGKTYTLGRLGKDDASERGIMVRALEDIISSMSVTSDSVEVSYLQLYMESIQDL------LAPEKVNIPINEDP 75 (267)
Q Consensus 2 ayG~tgSGKT~Tl~G~~~~~~~~~Gli~r~~~~lf~~~~~~~~~v~~S~~EIy~e~v~DL------L~~~~~~~~i~~~~ 75 (267)
-||..|+|||.++ ..+.......+ +..+||..+.+.|| |...+...-
T Consensus 57 L~G~rGtGKSSlV------------------kall~~y~~~G----LRlIev~k~~L~~l~~l~~~l~~~~~kFI----- 109 (249)
T PF05673_consen 57 LWGARGTGKSSLV------------------KALLNEYADQG----LRLIEVSKEDLGDLPELLDLLRDRPYKFI----- 109 (249)
T ss_pred EecCCCCCHHHHH------------------HHHHHHHhhcC----ceEEEECHHHhccHHHHHHHHhcCCCCEE-----
Confidence 4899999999888 11222222222 67888888776655 232211111
Q ss_pred CCCCccCCCCeEEEe-CCHHHHHHHHHHHhhccccccCCCcCCCCCccceE
Q 024439 76 KTGEVSLPGATVVKL-RDLDHLLQLLQVGEVNRHAANTKLNTESSRSHAIL 125 (267)
Q Consensus 76 ~~g~~~i~~l~~~~v-~s~~e~~~~l~~~~~~R~~~~~~~~~~ssrsH~i~ 125 (267)
+++.+|+.-.- .+...+..+|..+...| ....-....|.|-|+|=
T Consensus 110 ----lf~DDLsFe~~d~~yk~LKs~LeGgle~~-P~NvliyATSNRRHLv~ 155 (249)
T PF05673_consen 110 ----LFCDDLSFEEGDTEYKALKSVLEGGLEAR-PDNVLIYATSNRRHLVP 155 (249)
T ss_pred ----EEecCCCCCCCcHHHHHHHHHhcCccccC-CCcEEEEEecchhhccc
Confidence 22333332111 24566777777776544 44455566777878774
No 39
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=85.99 E-value=0.22 Score=41.55 Aligned_cols=13 Identities=54% Similarity=0.836 Sum_probs=12.0
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-||++|+||||-|
T Consensus 39 l~G~~G~GKTHLL 51 (219)
T PF00308_consen 39 LYGPSGLGKTHLL 51 (219)
T ss_dssp EEESTTSSHHHHH
T ss_pred EECCCCCCHHHHH
Confidence 4999999999988
No 40
>PRK06893 DNA replication initiation factor; Validated
Probab=85.91 E-value=0.23 Score=41.62 Aligned_cols=13 Identities=31% Similarity=0.583 Sum_probs=12.1
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-||++|+||||.+
T Consensus 44 l~G~~G~GKThL~ 56 (229)
T PRK06893 44 IWGGKSSGKSHLL 56 (229)
T ss_pred EECCCCCCHHHHH
Confidence 4899999999999
No 41
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=85.62 E-value=0.23 Score=36.82 Aligned_cols=13 Identities=38% Similarity=0.493 Sum_probs=12.0
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
.+|++|||||+++
T Consensus 5 i~~~~G~GKT~~~ 17 (144)
T cd00046 5 LAAPTGSGKTLAA 17 (144)
T ss_pred EECCCCCchhHHH
Confidence 5799999999998
No 42
>PRK09087 hypothetical protein; Validated
Probab=85.40 E-value=0.25 Score=41.40 Aligned_cols=12 Identities=42% Similarity=0.553 Sum_probs=11.7
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
||++||||||.+
T Consensus 50 ~G~~GsGKThLl 61 (226)
T PRK09087 50 AGPVGSGKTHLA 61 (226)
T ss_pred ECCCCCCHHHHH
Confidence 899999999999
No 43
>PRK08727 hypothetical protein; Validated
Probab=85.22 E-value=0.26 Score=41.47 Aligned_cols=13 Identities=46% Similarity=0.529 Sum_probs=12.1
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-||++|+||||.+
T Consensus 46 l~G~~G~GKThL~ 58 (233)
T PRK08727 46 LSGPAGTGKTHLA 58 (233)
T ss_pred EECCCCCCHHHHH
Confidence 4899999999999
No 44
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=85.21 E-value=0.26 Score=36.53 Aligned_cols=13 Identities=38% Similarity=0.529 Sum_probs=11.9
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
=+|++|||||+++
T Consensus 7 l~G~~G~GKTtl~ 19 (148)
T smart00382 7 IVGPPGSGKTTLA 19 (148)
T ss_pred EECCCCCcHHHHH
Confidence 3799999999999
No 45
>PRK08084 DNA replication initiation factor; Provisional
Probab=84.92 E-value=0.27 Score=41.39 Aligned_cols=13 Identities=23% Similarity=0.595 Sum_probs=12.1
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
=||++|+||||.+
T Consensus 50 l~Gp~G~GKThLl 62 (235)
T PRK08084 50 LWSREGAGRSHLL 62 (235)
T ss_pred EECCCCCCHHHHH
Confidence 3899999999999
No 46
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=84.57 E-value=0.21 Score=42.54 Aligned_cols=12 Identities=58% Similarity=0.894 Sum_probs=11.2
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|++|||||+||
T Consensus 33 iGpSGsGKTTtL 44 (309)
T COG1125 33 IGPSGSGKTTTL 44 (309)
T ss_pred ECCCCCcHHHHH
Confidence 499999999998
No 47
>PRK05642 DNA replication initiation factor; Validated
Probab=83.12 E-value=0.36 Score=40.63 Aligned_cols=13 Identities=31% Similarity=0.741 Sum_probs=12.0
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
=||++|+||||-+
T Consensus 50 l~G~~G~GKTHLl 62 (234)
T PRK05642 50 LWGKDGVGRSHLL 62 (234)
T ss_pred EECCCCCCHHHHH
Confidence 3799999999998
No 48
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=83.05 E-value=0.29 Score=36.62 Aligned_cols=13 Identities=38% Similarity=0.611 Sum_probs=11.2
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-+|++|+|||.++
T Consensus 9 i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 9 ISGPPGSGKTTLI 21 (131)
T ss_dssp EEE-TTSSHHHHH
T ss_pred EEcCCCCCHHHHH
Confidence 5899999999999
No 49
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=82.79 E-value=0.38 Score=41.98 Aligned_cols=13 Identities=54% Similarity=0.953 Sum_probs=12.1
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
.||+||||||+-+
T Consensus 92 VYGPTG~GKSqLl 104 (369)
T PF02456_consen 92 VYGPTGSGKSQLL 104 (369)
T ss_pred EECCCCCCHHHHH
Confidence 5999999999998
No 50
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=82.62 E-value=0.39 Score=39.31 Aligned_cols=12 Identities=58% Similarity=0.861 Sum_probs=11.3
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|++|||||+++
T Consensus 7 ~GptGSGKTTll 18 (198)
T cd01131 7 TGPTGSGKSTTL 18 (198)
T ss_pred ECCCCCCHHHHH
Confidence 599999999999
No 51
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=81.65 E-value=0.44 Score=31.30 Aligned_cols=12 Identities=42% Similarity=0.700 Sum_probs=11.0
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|++|||||..|
T Consensus 29 ~G~nGsGKSTll 40 (62)
T PF13555_consen 29 TGPNGSGKSTLL 40 (62)
T ss_pred ECCCCCCHHHHH
Confidence 699999999888
No 52
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=81.13 E-value=0.46 Score=38.93 Aligned_cols=12 Identities=58% Similarity=0.836 Sum_probs=11.5
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|++|+|||.|+
T Consensus 7 vGptGvGKTTt~ 18 (196)
T PF00448_consen 7 VGPTGVGKTTTI 18 (196)
T ss_dssp EESTTSSHHHHH
T ss_pred ECCCCCchHhHH
Confidence 699999999999
No 53
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=80.84 E-value=0.49 Score=35.19 Aligned_cols=13 Identities=46% Similarity=0.516 Sum_probs=11.9
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
=||+.|+|||+..
T Consensus 3 l~G~~G~GKT~l~ 15 (132)
T PF00004_consen 3 LHGPPGTGKTTLA 15 (132)
T ss_dssp EESSTTSSHHHHH
T ss_pred EECcCCCCeeHHH
Confidence 3899999999998
No 54
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=80.83 E-value=0.76 Score=45.07 Aligned_cols=27 Identities=30% Similarity=0.614 Sum_probs=20.2
Q ss_pred cccCCccCccccc------cccCCCCCCCcChH
Q 024439 2 AYGQTGTGKTYTL------GRLGKDDASERGIM 28 (267)
Q Consensus 2 ayG~tgSGKT~Tl------~G~~~~~~~~~Gli 28 (267)
-+|+||||||+-+ -|++..+..++|+|
T Consensus 276 IcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmI 308 (1172)
T KOG0926|consen 276 ICGETGSGKTTQVPQFLYEAGFASEQSSSPGMI 308 (1172)
T ss_pred EecCCCCCccccchHHHHHcccCCccCCCCCee
Confidence 4799999999998 34444555668887
No 55
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=80.77 E-value=0.74 Score=40.20 Aligned_cols=13 Identities=62% Similarity=0.841 Sum_probs=12.1
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
=|||.|+|||.|.
T Consensus 62 FyGPpGTGKTSta 74 (346)
T KOG0989|consen 62 FYGPPGTGKTSTA 74 (346)
T ss_pred eeCCCCCcHhHHH
Confidence 3999999999998
No 56
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=80.64 E-value=0.49 Score=38.89 Aligned_cols=12 Identities=67% Similarity=0.855 Sum_probs=10.2
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
-||.|||||+|+
T Consensus 23 ~GpPGTGKT~~l 34 (236)
T PF13086_consen 23 QGPPGTGKTTTL 34 (236)
T ss_dssp E-STTSSHHHHH
T ss_pred ECCCCCChHHHH
Confidence 599999999998
No 57
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=80.63 E-value=0.71 Score=41.52 Aligned_cols=13 Identities=62% Similarity=1.178 Sum_probs=12.1
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-||.+||||||++
T Consensus 35 iyG~sgTGKT~~~ 47 (438)
T KOG2543|consen 35 IYGHSGTGKTYLV 47 (438)
T ss_pred EeccCCCchhHHH
Confidence 4999999999998
No 58
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=79.68 E-value=1.1 Score=32.66 Aligned_cols=24 Identities=25% Similarity=0.509 Sum_probs=19.0
Q ss_pred cccCCccCccccccccCCCCCCCcChHHHHHHHHHHhc
Q 024439 2 AYGQTGTGKTYTLGRLGKDDASERGIMVRALEDIISSM 39 (267)
Q Consensus 2 ayG~tgSGKT~Tl~G~~~~~~~~~Gli~r~~~~lf~~~ 39 (267)
-||++|.|||+.+ ..++++|.+.+
T Consensus 3 i~G~~G~GKS~l~--------------~~l~~~l~~~~ 26 (107)
T PF00910_consen 3 IYGPPGIGKSTLA--------------KELAKDLLKHI 26 (107)
T ss_pred EECCCCCCHHHHH--------------HHHHHHHHHHh
Confidence 4899999999999 45666666665
No 59
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=79.10 E-value=0.58 Score=36.88 Aligned_cols=13 Identities=38% Similarity=0.383 Sum_probs=11.5
Q ss_pred ccCCccCcccccc
Q 024439 3 YGQTGTGKTYTLG 15 (267)
Q Consensus 3 yG~tgSGKT~Tl~ 15 (267)
.++||||||+++.
T Consensus 31 ~~~tGsGKT~~~~ 43 (184)
T PF04851_consen 31 NAPTGSGKTIIAL 43 (184)
T ss_dssp EESTTSSHHHHHH
T ss_pred EECCCCCcChhhh
Confidence 5799999999993
No 60
>PRK06526 transposase; Provisional
Probab=78.90 E-value=0.63 Score=39.77 Aligned_cols=15 Identities=40% Similarity=0.344 Sum_probs=13.0
Q ss_pred cccCCccCccccccc
Q 024439 2 AYGQTGTGKTYTLGR 16 (267)
Q Consensus 2 ayG~tgSGKT~Tl~G 16 (267)
-||++|+||||...+
T Consensus 103 l~Gp~GtGKThLa~a 117 (254)
T PRK06526 103 FLGPPGTGKTHLAIG 117 (254)
T ss_pred EEeCCCCchHHHHHH
Confidence 589999999999843
No 61
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=78.86 E-value=1.1 Score=38.63 Aligned_cols=12 Identities=50% Similarity=0.659 Sum_probs=10.1
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
-|..|||||+||
T Consensus 19 ~a~AGSGKT~~l 30 (315)
T PF00580_consen 19 NAGAGSGKTTTL 30 (315)
T ss_dssp EE-TTSSHHHHH
T ss_pred EeCCCCCchHHH
Confidence 488999999999
No 62
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=78.68 E-value=0.64 Score=41.84 Aligned_cols=13 Identities=46% Similarity=0.677 Sum_probs=11.8
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-.|+||||||.||
T Consensus 139 I~GpTGSGKTTtL 151 (358)
T TIGR02524 139 ITGATGSGKSTLL 151 (358)
T ss_pred EECCCCCCHHHHH
Confidence 3699999999999
No 63
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=78.54 E-value=0.65 Score=42.33 Aligned_cols=13 Identities=54% Similarity=0.787 Sum_probs=12.3
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
=||++|+||||-|
T Consensus 118 i~G~~GlGKTHLl 130 (408)
T COG0593 118 IYGGVGLGKTHLL 130 (408)
T ss_pred EECCCCCCHHHHH
Confidence 4999999999999
No 64
>PF12846 AAA_10: AAA-like domain
Probab=78.27 E-value=0.6 Score=40.13 Aligned_cols=13 Identities=54% Similarity=0.795 Sum_probs=12.0
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
..|.||||||+++
T Consensus 6 i~G~tGsGKT~~~ 18 (304)
T PF12846_consen 6 ILGKTGSGKTTLL 18 (304)
T ss_pred EECCCCCcHHHHH
Confidence 5799999999998
No 65
>PRK10436 hypothetical protein; Provisional
Probab=78.20 E-value=0.7 Score=43.04 Aligned_cols=13 Identities=62% Similarity=0.843 Sum_probs=11.8
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
--|+||||||.||
T Consensus 223 vtGpTGSGKTTtL 235 (462)
T PRK10436 223 VTGPTGSGKTVTL 235 (462)
T ss_pred EECCCCCChHHHH
Confidence 3599999999999
No 66
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=78.05 E-value=0.69 Score=34.53 Aligned_cols=13 Identities=54% Similarity=0.772 Sum_probs=11.6
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-+|++|+|||+.+
T Consensus 24 i~G~~G~GKT~l~ 36 (151)
T cd00009 24 LYGPPGTGKTTLA 36 (151)
T ss_pred EECCCCCCHHHHH
Confidence 4799999999887
No 67
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=77.63 E-value=0.75 Score=37.03 Aligned_cols=13 Identities=54% Similarity=0.764 Sum_probs=12.0
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-||++|+||||..
T Consensus 52 l~G~~G~GKThLa 64 (178)
T PF01695_consen 52 LYGPPGTGKTHLA 64 (178)
T ss_dssp EEESTTSSHHHHH
T ss_pred EEhhHhHHHHHHH
Confidence 4899999999998
No 68
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=77.40 E-value=0.73 Score=42.11 Aligned_cols=13 Identities=54% Similarity=0.787 Sum_probs=12.2
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
=||++|+||||.+
T Consensus 141 l~G~~G~GKThL~ 153 (405)
T TIGR00362 141 IYGGVGLGKTHLL 153 (405)
T ss_pred EECCCCCcHHHHH
Confidence 4999999999999
No 69
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=77.13 E-value=0.91 Score=39.00 Aligned_cols=12 Identities=50% Similarity=0.850 Sum_probs=11.3
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
-|+||||||.||
T Consensus 133 VGaTGSGKSTtm 144 (375)
T COG5008 133 VGATGSGKSTTM 144 (375)
T ss_pred ECCCCCCchhhH
Confidence 599999999998
No 70
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=77.03 E-value=0.77 Score=37.97 Aligned_cols=13 Identities=38% Similarity=0.836 Sum_probs=12.1
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-||++|+||||.+
T Consensus 43 l~G~~G~GKT~la 55 (226)
T TIGR03420 43 LWGESGSGKSHLL 55 (226)
T ss_pred EECCCCCCHHHHH
Confidence 4899999999999
No 71
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=76.89 E-value=0.78 Score=41.47 Aligned_cols=13 Identities=38% Similarity=0.629 Sum_probs=11.9
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-.|+||||||+||
T Consensus 154 I~G~TGSGKTT~l 166 (372)
T TIGR02525 154 ICGETGSGKSTLA 166 (372)
T ss_pred EECCCCCCHHHHH
Confidence 3699999999999
No 72
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=76.83 E-value=0.77 Score=41.03 Aligned_cols=12 Identities=58% Similarity=0.861 Sum_probs=11.4
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|++|||||+||
T Consensus 128 ~G~tGSGKTT~l 139 (343)
T TIGR01420 128 TGPTGSGKSTTL 139 (343)
T ss_pred ECCCCCCHHHHH
Confidence 699999999999
No 73
>PF13479 AAA_24: AAA domain
Probab=76.72 E-value=0.83 Score=37.83 Aligned_cols=13 Identities=46% Similarity=0.756 Sum_probs=12.1
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-||++|+|||++.
T Consensus 8 IyG~~G~GKTt~a 20 (213)
T PF13479_consen 8 IYGPPGSGKTTLA 20 (213)
T ss_pred EECCCCCCHHHHH
Confidence 5999999999988
No 74
>PRK06835 DNA replication protein DnaC; Validated
Probab=76.39 E-value=0.81 Score=40.69 Aligned_cols=13 Identities=62% Similarity=0.984 Sum_probs=12.0
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-||++|+||||.+
T Consensus 188 l~G~~GtGKThLa 200 (329)
T PRK06835 188 FYGNTGTGKTFLS 200 (329)
T ss_pred EECCCCCcHHHHH
Confidence 4899999999988
No 75
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=76.16 E-value=0.82 Score=42.37 Aligned_cols=13 Identities=54% Similarity=0.787 Sum_probs=12.2
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
=||++|+||||.+
T Consensus 135 lyG~~G~GKTHLl 147 (440)
T PRK14088 135 IYGGVGLGKTHLL 147 (440)
T ss_pred EEcCCCCcHHHHH
Confidence 4999999999999
No 76
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=76.09 E-value=2.9 Score=35.75 Aligned_cols=34 Identities=18% Similarity=0.193 Sum_probs=25.3
Q ss_pred ccCCccCccccc-----cccCCCCCCCcChHHHHHHHHH
Q 024439 3 YGQTGTGKTYTL-----GRLGKDDASERGIMVRALEDII 36 (267)
Q Consensus 3 yG~tgSGKT~Tl-----~G~~~~~~~~~Gli~r~~~~lf 36 (267)
=|.+|||||..+ .|+-.-+.--+.|+|.+++-+.
T Consensus 7 TGlSGAGKsvAl~~lEDlGyycvDNLPp~Llp~~~~~~~ 45 (286)
T COG1660 7 TGLSGAGKSVALRVLEDLGYYCVDNLPPQLLPKLADLML 45 (286)
T ss_pred ecCCCCcHHHHHHHHHhcCeeeecCCCHHHHHHHHHHHh
Confidence 489999999998 4443444455789998888666
No 77
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=75.79 E-value=0.78 Score=34.83 Aligned_cols=14 Identities=29% Similarity=0.532 Sum_probs=12.1
Q ss_pred CcccCCccCccccc
Q 024439 1 MAYGQTGTGKTYTL 14 (267)
Q Consensus 1 ~ayG~tgSGKT~Tl 14 (267)
+.+|+.|||||+..
T Consensus 3 i~~G~pgsGKSt~a 16 (143)
T PF13671_consen 3 ILCGPPGSGKSTLA 16 (143)
T ss_dssp EEEESTTSSHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 35799999999987
No 78
>PRK12377 putative replication protein; Provisional
Probab=75.71 E-value=0.87 Score=38.79 Aligned_cols=12 Identities=42% Similarity=0.584 Sum_probs=11.5
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
||++|+||||.+
T Consensus 107 ~G~~GtGKThLa 118 (248)
T PRK12377 107 SGKPGTGKNHLA 118 (248)
T ss_pred ECCCCCCHHHHH
Confidence 799999999999
No 79
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=75.67 E-value=0.89 Score=33.50 Aligned_cols=12 Identities=33% Similarity=0.545 Sum_probs=11.2
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|++|||||+..
T Consensus 5 ~G~~gsGKST~a 16 (121)
T PF13207_consen 5 SGPPGSGKSTLA 16 (121)
T ss_dssp EESTTSSHHHHH
T ss_pred ECCCCCCHHHHH
Confidence 699999999988
No 80
>PRK06921 hypothetical protein; Provisional
Probab=75.66 E-value=0.85 Score=39.23 Aligned_cols=13 Identities=54% Similarity=0.746 Sum_probs=12.0
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-||++|+||||.+
T Consensus 122 l~G~~G~GKThLa 134 (266)
T PRK06921 122 LLGQPGSGKTHLL 134 (266)
T ss_pred EECCCCCcHHHHH
Confidence 4899999999999
No 81
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=74.81 E-value=0.94 Score=42.03 Aligned_cols=13 Identities=54% Similarity=0.787 Sum_probs=12.1
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
=||++|+||||.+
T Consensus 153 l~G~~G~GKThL~ 165 (450)
T PRK00149 153 IYGGVGLGKTHLL 165 (450)
T ss_pred EECCCCCCHHHHH
Confidence 4899999999999
No 82
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=74.56 E-value=0.97 Score=37.86 Aligned_cols=12 Identities=42% Similarity=0.750 Sum_probs=11.1
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|++|||||+-|
T Consensus 37 ~GpSGSGKSTLL 48 (226)
T COG1136 37 VGPSGSGKSTLL 48 (226)
T ss_pred ECCCCCCHHHHH
Confidence 699999999988
No 83
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=74.46 E-value=1.8 Score=32.74 Aligned_cols=22 Identities=36% Similarity=0.437 Sum_probs=17.7
Q ss_pred ccCCccCccccccccCCCCCCCcChHHHHHHHHHHh
Q 024439 3 YGQTGTGKTYTLGRLGKDDASERGIMVRALEDIISS 38 (267)
Q Consensus 3 yG~tgSGKT~Tl~G~~~~~~~~~Gli~r~~~~lf~~ 38 (267)
-|++|+||||+- ..+.+.||..
T Consensus 59 HG~tGtGKn~v~--------------~liA~~ly~~ 80 (127)
T PF06309_consen 59 HGWTGTGKNFVS--------------RLIAEHLYKS 80 (127)
T ss_pred ecCCCCcHHHHH--------------HHHHHHHHhc
Confidence 499999999998 5567777865
No 84
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=74.35 E-value=1 Score=43.17 Aligned_cols=13 Identities=54% Similarity=0.818 Sum_probs=11.9
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-.|+||||||+||
T Consensus 321 v~G~tGSGKTTtl 333 (564)
T TIGR02538 321 VTGPTGSGKTVSL 333 (564)
T ss_pred EECCCCCCHHHHH
Confidence 4699999999999
No 85
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=74.33 E-value=1 Score=39.12 Aligned_cols=12 Identities=67% Similarity=0.869 Sum_probs=11.3
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|++|+|||+|+
T Consensus 200 vGptGvGKTTt~ 211 (282)
T TIGR03499 200 VGPTGVGKTTTL 211 (282)
T ss_pred ECCCCCCHHHHH
Confidence 599999999999
No 86
>PRK08181 transposase; Validated
Probab=74.32 E-value=1.1 Score=38.71 Aligned_cols=15 Identities=27% Similarity=0.499 Sum_probs=12.8
Q ss_pred cccCCccCccccccc
Q 024439 2 AYGQTGTGKTYTLGR 16 (267)
Q Consensus 2 ayG~tgSGKT~Tl~G 16 (267)
-||++|+||||.+.+
T Consensus 111 l~Gp~GtGKTHLa~A 125 (269)
T PRK08181 111 LFGPPGGGKSHLAAA 125 (269)
T ss_pred EEecCCCcHHHHHHH
Confidence 389999999999843
No 87
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=74.10 E-value=1.1 Score=37.25 Aligned_cols=13 Identities=31% Similarity=0.800 Sum_probs=12.0
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
=||++|+||||.+
T Consensus 47 l~G~~G~GKT~La 59 (227)
T PRK08903 47 LWGEAGSGRSHLL 59 (227)
T ss_pred EECCCCCCHHHHH
Confidence 3899999999998
No 88
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=74.00 E-value=2 Score=39.82 Aligned_cols=56 Identities=27% Similarity=0.312 Sum_probs=36.1
Q ss_pred CcccCCccCcccccccc--------CCCCCC--CcChHHH---------HHHHHHHhcccCCCeEEEEEEEEecC
Q 024439 1 MAYGQTGTGKTYTLGRL--------GKDDAS--ERGIMVR---------ALEDIISSMSVTSDSVEVSYLQLYME 56 (267)
Q Consensus 1 ~ayG~tgSGKT~Tl~G~--------~~~~~~--~~Gli~r---------~~~~lf~~~~~~~~~v~~S~~EIy~e 56 (267)
+|++|||||||+....+ +..+.. ..+..|+ .+.++|.......+.-.+-.+.+|++
T Consensus 115 ~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg 189 (482)
T KOG0335|consen 115 MACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGG 189 (482)
T ss_pred EEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCC
Confidence 58899999999997331 110100 1111233 47788888777777777777888877
No 89
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=73.95 E-value=3.3 Score=36.98 Aligned_cols=13 Identities=62% Similarity=0.910 Sum_probs=12.0
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-||++|+|||+++
T Consensus 45 I~G~~GtGKT~l~ 57 (365)
T TIGR02928 45 IYGKTGTGKTAVT 57 (365)
T ss_pred EECCCCCCHHHHH
Confidence 4899999999998
No 90
>PRK08116 hypothetical protein; Validated
Probab=73.89 E-value=1 Score=38.78 Aligned_cols=13 Identities=54% Similarity=0.933 Sum_probs=12.1
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-||++|+||||.+
T Consensus 119 l~G~~GtGKThLa 131 (268)
T PRK08116 119 LWGSVGTGKTYLA 131 (268)
T ss_pred EECCCCCCHHHHH
Confidence 4899999999999
No 91
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=73.65 E-value=0.85 Score=37.29 Aligned_cols=14 Identities=43% Similarity=0.688 Sum_probs=10.6
Q ss_pred CcccCCccCccccc
Q 024439 1 MAYGQTGTGKTYTL 14 (267)
Q Consensus 1 ~ayG~tgSGKT~Tl 14 (267)
+.+|.+|||||.++
T Consensus 42 li~G~tgsGKS~~l 55 (205)
T PF01580_consen 42 LIAGATGSGKSTLL 55 (205)
T ss_dssp EEE--TTSSHHHHH
T ss_pred EEEcCCCCCccHHH
Confidence 35899999999999
No 92
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=73.39 E-value=1 Score=38.53 Aligned_cols=12 Identities=58% Similarity=0.783 Sum_probs=11.2
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
-|++|||||.+|
T Consensus 133 ~G~tGSGKTT~l 144 (270)
T PF00437_consen 133 SGPTGSGKTTLL 144 (270)
T ss_dssp EESTTSSHHHHH
T ss_pred ECCCccccchHH
Confidence 599999999999
No 93
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=73.22 E-value=1.1 Score=42.04 Aligned_cols=13 Identities=62% Similarity=0.823 Sum_probs=11.9
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-.|+||||||.||
T Consensus 247 itGptGSGKTTtL 259 (486)
T TIGR02533 247 VTGPTGSGKTTTL 259 (486)
T ss_pred EEcCCCCCHHHHH
Confidence 3699999999999
No 94
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=73.12 E-value=1.1 Score=32.83 Aligned_cols=12 Identities=42% Similarity=0.562 Sum_probs=11.1
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|++|||||..+
T Consensus 21 ~GpSGsGKSTLl 32 (107)
T cd00820 21 TGDSGIGKTELA 32 (107)
T ss_pred EcCCCCCHHHHH
Confidence 599999999998
No 95
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=72.82 E-value=1.1 Score=36.66 Aligned_cols=12 Identities=58% Similarity=0.764 Sum_probs=11.2
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.||||||+|
T Consensus 24 ~G~aGtGKT~~l 35 (196)
T PF13604_consen 24 QGPAGTGKTTLL 35 (196)
T ss_dssp EESTTSTHHHHH
T ss_pred EECCCCCHHHHH
Confidence 499999999999
No 96
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=72.69 E-value=1.1 Score=36.07 Aligned_cols=12 Identities=58% Similarity=0.761 Sum_probs=11.0
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|++|||||.++
T Consensus 31 ~G~tGSGKTTll 42 (186)
T cd01130 31 SGGTGSGKTTLL 42 (186)
T ss_pred ECCCCCCHHHHH
Confidence 599999999988
No 97
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=72.61 E-value=1.2 Score=38.33 Aligned_cols=12 Identities=67% Similarity=0.889 Sum_probs=11.3
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|++|||||++|
T Consensus 86 sG~tGSGKTT~l 97 (264)
T cd01129 86 TGPTGSGKTTTL 97 (264)
T ss_pred ECCCCCcHHHHH
Confidence 599999999999
No 98
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=72.00 E-value=1.2 Score=39.82 Aligned_cols=12 Identities=50% Similarity=0.753 Sum_probs=11.1
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.||+|||||++|
T Consensus 37 LGPSGcGKTTlL 48 (352)
T COG3842 37 LGPSGCGKTTLL 48 (352)
T ss_pred ECCCCCCHHHHH
Confidence 499999999998
No 99
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=71.56 E-value=1.3 Score=36.53 Aligned_cols=14 Identities=43% Similarity=0.767 Sum_probs=10.3
Q ss_pred CcccCCccCccccc
Q 024439 1 MAYGQTGTGKTYTL 14 (267)
Q Consensus 1 ~ayG~tgSGKT~Tl 14 (267)
++.|+.|||||+.-
T Consensus 23 ~~~G~AGTGKT~LA 36 (205)
T PF02562_consen 23 IVNGPAGTGKTFLA 36 (205)
T ss_dssp EEE--TTSSTTHHH
T ss_pred EEECCCCCcHHHHH
Confidence 36899999999987
No 100
>PRK09183 transposase/IS protein; Provisional
Probab=71.48 E-value=1.4 Score=37.79 Aligned_cols=14 Identities=36% Similarity=0.392 Sum_probs=12.3
Q ss_pred cccCCccCcccccc
Q 024439 2 AYGQTGTGKTYTLG 15 (267)
Q Consensus 2 ayG~tgSGKT~Tl~ 15 (267)
-+|++|+||||...
T Consensus 107 l~Gp~GtGKThLa~ 120 (259)
T PRK09183 107 LLGPSGVGKTHLAI 120 (259)
T ss_pred EEeCCCCCHHHHHH
Confidence 37999999999983
No 101
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=71.32 E-value=3.3 Score=37.10 Aligned_cols=46 Identities=22% Similarity=0.341 Sum_probs=27.8
Q ss_pred CcccCCccCccccccccCCCC------CCC-------cChHHHHHHHHHHhcccCCCeE
Q 024439 1 MAYGQTGTGKTYTLGRLGKDD------ASE-------RGIMVRALEDIISSMSVTSDSV 46 (267)
Q Consensus 1 ~ayG~tgSGKT~Tl~G~~~~~------~~~-------~Gli~r~~~~lf~~~~~~~~~v 46 (267)
+-||+.|+|||-.---.-... -.. -|==+|.++++|....++..++
T Consensus 189 LLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lArekaPsI 247 (406)
T COG1222 189 LLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREKAPSI 247 (406)
T ss_pred EeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHhhcCCeE
Confidence 359999999997541000000 000 1223789999999988776643
No 102
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=71.24 E-value=1.3 Score=33.93 Aligned_cols=13 Identities=46% Similarity=0.772 Sum_probs=11.8
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-+|++|+|||+.+
T Consensus 4 i~G~~G~GKT~l~ 16 (165)
T cd01120 4 VFGPTGSGKTTLA 16 (165)
T ss_pred EeCCCCCCHHHHH
Confidence 3899999999988
No 103
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=71.14 E-value=1.4 Score=37.69 Aligned_cols=13 Identities=46% Similarity=0.547 Sum_probs=11.9
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
=||++|+|||++.
T Consensus 47 l~GppGtGKTtlA 59 (261)
T TIGR02881 47 FKGNPGTGKTTVA 59 (261)
T ss_pred EEcCCCCCHHHHH
Confidence 3899999999998
No 104
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=70.56 E-value=1.4 Score=39.86 Aligned_cols=12 Identities=58% Similarity=0.747 Sum_probs=11.5
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
+|++|+|||+|+
T Consensus 143 vGptGvGKTTti 154 (374)
T PRK14722 143 MGPTGVGKTTTT 154 (374)
T ss_pred ECCCCCCHHHHH
Confidence 699999999999
No 105
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=70.49 E-value=1.4 Score=36.66 Aligned_cols=12 Identities=42% Similarity=0.761 Sum_probs=11.0
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|++|||||+.+
T Consensus 34 iGpSGSGKSTlL 45 (240)
T COG1126 34 IGPSGSGKSTLL 45 (240)
T ss_pred ECCCCCCHHHHH
Confidence 699999999887
No 106
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=70.20 E-value=10 Score=30.73 Aligned_cols=18 Identities=11% Similarity=0.078 Sum_probs=12.4
Q ss_pred EEEeCCHHHHHHHHHHHh
Q 024439 87 VVKLRDLDHLLQLLQVGE 104 (267)
Q Consensus 87 ~~~v~s~~e~~~~l~~~~ 104 (267)
....-|.+|+.+++..+.
T Consensus 50 dY~Fvs~~EF~~~i~~~~ 67 (191)
T COG0194 50 DYFFVTEEEFEELIERDE 67 (191)
T ss_pred eeEeCCHHHHHHHHhcCC
Confidence 344567888888887654
No 107
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=69.88 E-value=1.4 Score=40.89 Aligned_cols=13 Identities=54% Similarity=0.912 Sum_probs=12.1
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
=||++|+||||.+
T Consensus 146 i~G~~G~GKTHLl 158 (450)
T PRK14087 146 IYGESGMGKTHLL 158 (450)
T ss_pred EECCCCCcHHHHH
Confidence 4899999999999
No 108
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=69.50 E-value=1.4 Score=34.83 Aligned_cols=13 Identities=46% Similarity=0.716 Sum_probs=10.0
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-+|++|+|||+.+
T Consensus 29 l~G~~G~GKT~ll 41 (185)
T PF13191_consen 29 LTGESGSGKTSLL 41 (185)
T ss_dssp E-B-TTSSHHHHH
T ss_pred EECCCCCCHHHHH
Confidence 4799999999998
No 109
>PRK08939 primosomal protein DnaI; Reviewed
Probab=69.48 E-value=1.5 Score=38.59 Aligned_cols=14 Identities=50% Similarity=0.971 Sum_probs=12.5
Q ss_pred cccCCccCcccccc
Q 024439 2 AYGQTGTGKTYTLG 15 (267)
Q Consensus 2 ayG~tgSGKT~Tl~ 15 (267)
-||++|+||||.+.
T Consensus 161 L~G~~G~GKThLa~ 174 (306)
T PRK08939 161 LYGDFGVGKSYLLA 174 (306)
T ss_pred EECCCCCCHHHHHH
Confidence 48999999999993
No 110
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=69.25 E-value=1.5 Score=38.55 Aligned_cols=13 Identities=38% Similarity=0.654 Sum_probs=12.0
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-||++|+|||+++
T Consensus 41 l~Gp~GtGKT~la 53 (337)
T PRK12402 41 VQGPPGSGKTAAV 53 (337)
T ss_pred EECCCCCCHHHHH
Confidence 4899999999998
No 111
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=69.13 E-value=1.5 Score=39.23 Aligned_cols=12 Identities=50% Similarity=0.673 Sum_probs=11.3
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+||||||++|
T Consensus 168 ~G~tGSGKTTll 179 (344)
T PRK13851 168 CGPTGSGKTTMS 179 (344)
T ss_pred ECCCCccHHHHH
Confidence 599999999998
No 112
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=69.00 E-value=1.5 Score=40.61 Aligned_cols=13 Identities=38% Similarity=0.767 Sum_probs=12.1
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
=||++|+||||.+
T Consensus 146 L~G~~G~GKTHLl 158 (445)
T PRK12422 146 LFGPEGSGKTHLM 158 (445)
T ss_pred EEcCCCCCHHHHH
Confidence 4899999999999
No 113
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=68.99 E-value=1.6 Score=37.21 Aligned_cols=13 Identities=38% Similarity=0.501 Sum_probs=12.0
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-||+.|+||||..
T Consensus 110 l~G~~G~GKThLa 122 (254)
T COG1484 110 LLGPPGVGKTHLA 122 (254)
T ss_pred EECCCCCcHHHHH
Confidence 3899999999998
No 114
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=68.82 E-value=2.1 Score=37.10 Aligned_cols=34 Identities=21% Similarity=0.203 Sum_probs=23.1
Q ss_pred ccCCccCccccc-----cccCCCCCCCcChHHHHHHHHH
Q 024439 3 YGQTGTGKTYTL-----GRLGKDDASERGIMVRALEDII 36 (267)
Q Consensus 3 yG~tgSGKT~Tl-----~G~~~~~~~~~Gli~r~~~~lf 36 (267)
=|.+|||||.+| .|+-.-+.--+.|+|.+++.+-
T Consensus 7 TGlSGaGKs~Al~~lED~Gy~cvDNlP~~Ll~~l~~~~~ 45 (284)
T PF03668_consen 7 TGLSGAGKSTALRALEDLGYYCVDNLPPSLLPQLIELLA 45 (284)
T ss_pred eCCCcCCHHHHHHHHHhcCeeEEcCCcHHHHHHHHHHHH
Confidence 489999999998 4443334444677777775544
No 115
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=68.54 E-value=1.5 Score=39.99 Aligned_cols=13 Identities=54% Similarity=0.741 Sum_probs=12.1
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-+|++|+|||+|+
T Consensus 179 lvGptGvGKTTT~ 191 (388)
T PRK12723 179 LVGPTGVGKTTTI 191 (388)
T ss_pred EECCCCCCHHHHH
Confidence 4899999999999
No 116
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=68.28 E-value=1.8 Score=37.23 Aligned_cols=43 Identities=23% Similarity=0.361 Sum_probs=27.1
Q ss_pred cccCCccCccccccccCCCC-------------CCCcChHHHHHHHHHHhcccCCC
Q 024439 2 AYGQTGTGKTYTLGRLGKDD-------------ASERGIMVRALEDIISSMSVTSD 44 (267)
Q Consensus 2 ayG~tgSGKT~Tl~G~~~~~-------------~~~~Gli~r~~~~lf~~~~~~~~ 44 (267)
=||++|+|||++--....+. ++.-|=-.|-+++||+...+...
T Consensus 156 FyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~Ihely~rA~~~aP 211 (368)
T COG1223 156 FYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIHELYERARKAAP 211 (368)
T ss_pred EECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHHHHHHHHHHHhcCC
Confidence 49999999999852211110 22345556778888888665433
No 117
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=68.21 E-value=1.6 Score=37.05 Aligned_cols=12 Identities=42% Similarity=0.709 Sum_probs=11.4
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
+|+.|+|||+.+
T Consensus 49 ~G~~G~GKTtl~ 60 (269)
T TIGR03015 49 TGEVGAGKTTLI 60 (269)
T ss_pred EcCCCCCHHHHH
Confidence 799999999988
No 118
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=68.13 E-value=1.6 Score=36.31 Aligned_cols=11 Identities=36% Similarity=0.546 Sum_probs=10.6
Q ss_pred cCCccCccccc
Q 024439 4 GQTGTGKTYTL 14 (267)
Q Consensus 4 G~tgSGKT~Tl 14 (267)
|++|||||+++
T Consensus 6 G~sGSGKTTla 16 (220)
T cd02025 6 GSVAVGKSTTA 16 (220)
T ss_pred CCCCCCHHHHH
Confidence 99999999998
No 119
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=68.11 E-value=1.7 Score=38.60 Aligned_cols=12 Identities=50% Similarity=0.617 Sum_probs=11.3
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
-|++|||||++|
T Consensus 150 ~G~tGSGKTTll 161 (323)
T PRK13833 150 SGGTGSGKTTLA 161 (323)
T ss_pred ECCCCCCHHHHH
Confidence 599999999999
No 120
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=67.89 E-value=2 Score=40.76 Aligned_cols=20 Identities=40% Similarity=0.619 Sum_probs=14.3
Q ss_pred eeeeEEEEECCCCccccccC
Q 024439 161 RKSKLLIVDLAGSERIDKSG 180 (267)
Q Consensus 161 ~~s~l~fvDLagse~~~~~~ 180 (267)
..+-|.|||.+|.+...+.+
T Consensus 474 t~~PlvlvDT~~~~~~e~~~ 493 (649)
T KOG1803|consen 474 TKSPLVLVDTQGEKDEEKRG 493 (649)
T ss_pred cCCcEEEEecccchhhhhcc
Confidence 55678999999877654443
No 121
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=67.88 E-value=1.6 Score=32.17 Aligned_cols=12 Identities=42% Similarity=0.545 Sum_probs=11.2
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|.+|||||+..
T Consensus 4 ~G~~GsGKtTia 15 (129)
T PF13238_consen 4 SGIPGSGKTTIA 15 (129)
T ss_dssp EESTTSSHHHHH
T ss_pred ECCCCCCHHHHH
Confidence 699999999998
No 122
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=67.09 E-value=1.8 Score=34.21 Aligned_cols=12 Identities=33% Similarity=0.623 Sum_probs=11.2
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
+|++|||||+.+
T Consensus 1 ~G~sGsGKSTla 12 (163)
T PRK11545 1 MGVSGSGKSAVA 12 (163)
T ss_pred CCCCCCcHHHHH
Confidence 599999999998
No 123
>PF13173 AAA_14: AAA domain
Probab=66.71 E-value=1.9 Score=32.43 Aligned_cols=13 Identities=46% Similarity=0.585 Sum_probs=11.9
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-+|+.|+|||+.+
T Consensus 7 l~G~R~vGKTtll 19 (128)
T PF13173_consen 7 LTGPRGVGKTTLL 19 (128)
T ss_pred EECCCCCCHHHHH
Confidence 3799999999999
No 124
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=66.44 E-value=1.9 Score=37.74 Aligned_cols=12 Identities=42% Similarity=0.756 Sum_probs=11.3
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
+|++|||||.++
T Consensus 34 lGpSGaGKsTlL 45 (345)
T COG1118 34 LGPSGAGKSTLL 45 (345)
T ss_pred ECCCCCcHHHHH
Confidence 799999999997
No 125
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=66.41 E-value=1.9 Score=41.52 Aligned_cols=13 Identities=54% Similarity=0.894 Sum_probs=12.2
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
=||++|+||||.+
T Consensus 319 LyG~sGsGKTHLL 331 (617)
T PRK14086 319 IYGESGLGKTHLL 331 (617)
T ss_pred EECCCCCCHHHHH
Confidence 4899999999999
No 126
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=66.35 E-value=1.9 Score=35.01 Aligned_cols=12 Identities=42% Similarity=0.617 Sum_probs=10.9
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
-|++|||||+.+
T Consensus 5 ~G~~GsGKSTl~ 16 (198)
T cd02023 5 AGGSGSGKTTVA 16 (198)
T ss_pred ECCCCCCHHHHH
Confidence 389999999998
No 127
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=66.34 E-value=1.9 Score=38.39 Aligned_cols=12 Identities=42% Similarity=0.725 Sum_probs=11.2
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.||+|+|||++|
T Consensus 35 lGPSGcGKSTlL 46 (338)
T COG3839 35 LGPSGCGKSTLL 46 (338)
T ss_pred ECCCCCCHHHHH
Confidence 499999999998
No 128
>PRK07952 DNA replication protein DnaC; Validated
Probab=65.93 E-value=1.9 Score=36.58 Aligned_cols=13 Identities=38% Similarity=0.480 Sum_probs=12.0
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-||++|+||||.+
T Consensus 104 l~G~~GtGKThLa 116 (244)
T PRK07952 104 FSGKPGTGKNHLA 116 (244)
T ss_pred EECCCCCCHHHHH
Confidence 4899999999999
No 129
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=65.63 E-value=2.1 Score=34.20 Aligned_cols=13 Identities=38% Similarity=0.468 Sum_probs=11.6
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-+||+|+|||++.
T Consensus 8 l~GpsGvGKT~la 20 (171)
T PF07724_consen 8 LAGPSGVGKTELA 20 (171)
T ss_dssp EESSTTSSHHHHH
T ss_pred EECCCCCCHHHHH
Confidence 3799999999987
No 130
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=65.62 E-value=2 Score=37.63 Aligned_cols=12 Identities=50% Similarity=0.639 Sum_probs=11.2
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|++|||||+++
T Consensus 138 ~G~tGSGKTTll 149 (299)
T TIGR02782 138 VGGTGSGKTTLA 149 (299)
T ss_pred ECCCCCCHHHHH
Confidence 599999999998
No 131
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=65.36 E-value=2 Score=32.57 Aligned_cols=13 Identities=46% Similarity=0.544 Sum_probs=11.8
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-+|++|+|||..+
T Consensus 4 L~G~~G~GKt~l~ 16 (139)
T PF07728_consen 4 LVGPPGTGKTTLA 16 (139)
T ss_dssp EEESSSSSHHHHH
T ss_pred EECCCCCCHHHHH
Confidence 4799999999998
No 132
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=65.02 E-value=2.1 Score=38.73 Aligned_cols=13 Identities=62% Similarity=0.956 Sum_probs=12.0
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-||++|+|||+++
T Consensus 60 I~G~~GtGKT~l~ 72 (394)
T PRK00411 60 IYGPPGTGKTTTV 72 (394)
T ss_pred EECCCCCCHHHHH
Confidence 3899999999998
No 133
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=64.83 E-value=5.9 Score=34.56 Aligned_cols=12 Identities=33% Similarity=0.440 Sum_probs=10.8
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
-|++|||||+++
T Consensus 68 aG~~GSGKSTla 79 (290)
T TIGR00554 68 AGSVAVGKSTTA 79 (290)
T ss_pred ECCCCCCHHHHH
Confidence 389999999988
No 134
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=64.64 E-value=2 Score=34.32 Aligned_cols=13 Identities=46% Similarity=0.892 Sum_probs=11.8
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-||+.|+|||..+
T Consensus 24 i~G~Ng~GKStil 36 (202)
T PF13476_consen 24 IYGPNGSGKSTIL 36 (202)
T ss_dssp EEESTTSSHHHHH
T ss_pred EECCCCCCHHHHH
Confidence 3899999999998
No 135
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=64.50 E-value=1.7 Score=40.20 Aligned_cols=14 Identities=43% Similarity=0.612 Sum_probs=12.6
Q ss_pred CcccCCccCccccc
Q 024439 1 MAYGQTGTGKTYTL 14 (267)
Q Consensus 1 ~ayG~tgSGKT~Tl 14 (267)
|-||+.|||||...
T Consensus 202 l~~GpPGtGKTmla 215 (490)
T COG0606 202 LLVGPPGTGKTMLA 215 (490)
T ss_pred EEecCCCCchHHhh
Confidence 45999999999998
No 136
>PTZ00301 uridine kinase; Provisional
Probab=64.28 E-value=2.3 Score=35.19 Aligned_cols=11 Identities=36% Similarity=0.667 Sum_probs=10.2
Q ss_pred cCCccCccccc
Q 024439 4 GQTGTGKTYTL 14 (267)
Q Consensus 4 G~tgSGKT~Tl 14 (267)
|++|||||+.-
T Consensus 10 G~SgSGKTTla 20 (210)
T PTZ00301 10 GASGSGKSSLS 20 (210)
T ss_pred CCCcCCHHHHH
Confidence 89999999877
No 137
>PLN03025 replication factor C subunit; Provisional
Probab=64.16 E-value=2.2 Score=37.58 Aligned_cols=12 Identities=50% Similarity=0.789 Sum_probs=11.6
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
||+.|+|||++.
T Consensus 40 ~Gp~G~GKTtla 51 (319)
T PLN03025 40 SGPPGTGKTTSI 51 (319)
T ss_pred ECCCCCCHHHHH
Confidence 899999999998
No 138
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=64.15 E-value=2.2 Score=35.65 Aligned_cols=13 Identities=62% Similarity=1.025 Sum_probs=12.1
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-||+.|+|||+..
T Consensus 17 iyG~~G~GKtt~a 29 (220)
T TIGR01618 17 IYGKPGTGKTSTI 29 (220)
T ss_pred EECCCCCCHHHHH
Confidence 5999999999998
No 139
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=64.03 E-value=2.3 Score=38.68 Aligned_cols=22 Identities=9% Similarity=0.123 Sum_probs=15.8
Q ss_pred CCCCeEEEeCCHHHHHHHHHHH
Q 024439 82 LPGATVVKLRDLDHLLQLLQVG 103 (267)
Q Consensus 82 i~~l~~~~v~s~~e~~~~l~~~ 103 (267)
+.|+.-..|.++.|+...+..-
T Consensus 258 im~vp~~vv~~~~el~~ai~~l 279 (407)
T COG1419 258 IMGVPLEVVYSPKELAEAIEAL 279 (407)
T ss_pred HhCCceEEecCHHHHHHHHHHh
Confidence 5566677788888888777653
No 140
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=64.00 E-value=2.3 Score=34.52 Aligned_cols=12 Identities=42% Similarity=0.603 Sum_probs=10.8
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|++|||||+.-
T Consensus 5 ~G~sgSGKTTla 16 (194)
T PF00485_consen 5 AGPSGSGKTTLA 16 (194)
T ss_dssp EESTTSSHHHHH
T ss_pred ECCCCCCHHHHH
Confidence 499999999887
No 141
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=63.89 E-value=2.3 Score=35.16 Aligned_cols=12 Identities=33% Similarity=0.739 Sum_probs=11.2
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||.+|
T Consensus 31 vGpNGaGKSTll 42 (212)
T cd03274 31 VGPNGSGKSNVI 42 (212)
T ss_pred ECCCCCCHHHHH
Confidence 599999999998
No 142
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=63.57 E-value=2.3 Score=37.84 Aligned_cols=12 Identities=50% Similarity=0.445 Sum_probs=11.3
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+||||||++|
T Consensus 166 ~G~tgSGKTTll 177 (332)
T PRK13900 166 SGGTSTGKTTFT 177 (332)
T ss_pred ECCCCCCHHHHH
Confidence 599999999999
No 143
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=63.39 E-value=2.3 Score=37.20 Aligned_cols=12 Identities=50% Similarity=0.886 Sum_probs=11.4
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
||+.|||||+-|
T Consensus 26 ~G~WGsGKSs~l 37 (325)
T PF07693_consen 26 YGEWGSGKSSFL 37 (325)
T ss_pred ECCCCCCHHHHH
Confidence 799999999998
No 144
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=63.33 E-value=2.7 Score=34.90 Aligned_cols=41 Identities=12% Similarity=-0.022 Sum_probs=22.0
Q ss_pred CchhhHhhHHhcCCCCeEEEEEEeCCCCCChHHHHHHhHHH
Q 024439 217 DSKLTRLLRDSFGGSARTSLIITVGPSARNHAETTSTIMFG 257 (267)
Q Consensus 217 ~SkLT~lL~~~l~g~~~~~~I~~vsp~~~~~~eTl~TL~f~ 257 (267)
-.+||+-+-..+.-.+-+-|+--=+..++..+..|+++..|
T Consensus 209 f~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~a 249 (273)
T KOG1534|consen 209 FKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDA 249 (273)
T ss_pred HHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHH
Confidence 36777777777776665555433333334444444444433
No 145
>PRK10536 hypothetical protein; Provisional
Probab=63.06 E-value=2.3 Score=36.38 Aligned_cols=14 Identities=43% Similarity=0.733 Sum_probs=12.4
Q ss_pred CcccCCccCccccc
Q 024439 1 MAYGQTGTGKTYTL 14 (267)
Q Consensus 1 ~ayG~tgSGKT~Tl 14 (267)
+..|+.||||||..
T Consensus 78 ~i~G~aGTGKT~La 91 (262)
T PRK10536 78 FATGEAGCGKTWIS 91 (262)
T ss_pred EEECCCCCCHHHHH
Confidence 35799999999998
No 146
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=62.89 E-value=1.5 Score=42.11 Aligned_cols=80 Identities=46% Similarity=0.456 Sum_probs=62.9
Q ss_pred HHhhccccccCCCcCCCCCccceEEEEEEeeeeccccccccccccccccCCCCCCCCceeeeeEEEEECCCCccccccCC
Q 024439 102 VGEVNRHAANTKLNTESSRSHAILVVYIRRSVHEIIDKITSEEKDTRTELPGDNHVPLVRKSKLLIVDLAGSERIDKSGS 181 (267)
Q Consensus 102 ~~~~~R~~~~~~~~~~ssrsH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~fvDLagse~~~~~~~ 181 (267)
.+...+.......+..++++|.+|..+......... .-.+..+|||++|+. ....
T Consensus 486 ~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~n~~~~~~~e~~-~s~~ 540 (568)
T COG5059 486 KASKLRSSASTKLNLRSSRSHSKFRDHLNGSNSSTK------------------------ELSLNQVDLAGSERK-VSQS 540 (568)
T ss_pred hhccchhhcccchhhhhcccchhhhhcccchhhhhH------------------------HHHhhhhhccccccc-hhhh
Confidence 456677788888999999999999877644322110 001689999999999 8888
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHH
Q 024439 182 EGPLLEEAKFINLSLSSLGKCINAL 206 (267)
Q Consensus 182 ~~~~~~e~~~in~sl~~L~~vi~~l 206 (267)
.+.++++...++++|..++.++.+.
T Consensus 541 ~~~~l~~~~~~~k~l~~~~d~~~~~ 565 (568)
T COG5059 541 VGELLRETQSLNKSLSSLGDVIHAL 565 (568)
T ss_pred hHHHHHhhHhhhhccccchhhhhhc
Confidence 9999999999999999998888765
No 147
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=62.82 E-value=2.4 Score=32.95 Aligned_cols=13 Identities=38% Similarity=0.542 Sum_probs=11.4
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
..|+||||||...
T Consensus 19 i~aptGsGKT~~~ 31 (169)
T PF00270_consen 19 ISAPTGSGKTLAY 31 (169)
T ss_dssp EECSTTSSHHHHH
T ss_pred EECCCCCccHHHH
Confidence 3589999999998
No 148
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=62.68 E-value=2.4 Score=37.51 Aligned_cols=12 Identities=50% Similarity=0.733 Sum_probs=10.9
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|++|||||+++
T Consensus 154 ~G~tGSGKTTll 165 (319)
T PRK13894 154 IGGTGSGKTTLV 165 (319)
T ss_pred ECCCCCCHHHHH
Confidence 599999999887
No 149
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=62.37 E-value=2.4 Score=34.72 Aligned_cols=13 Identities=54% Similarity=0.871 Sum_probs=12.0
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-||+.|+|||+.|
T Consensus 25 l~G~rg~GKTsLl 37 (234)
T PF01637_consen 25 LYGPRGSGKTSLL 37 (234)
T ss_dssp EEESTTSSHHHHH
T ss_pred EEcCCcCCHHHHH
Confidence 4899999999998
No 150
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=62.01 E-value=2.5 Score=35.54 Aligned_cols=40 Identities=23% Similarity=0.169 Sum_probs=22.1
Q ss_pred cccCCccCccccc------cccCC-CCCCCcChHHHHHHHHHHhccc
Q 024439 2 AYGQTGTGKTYTL------GRLGK-DDASERGIMVRALEDIISSMSV 41 (267)
Q Consensus 2 ayG~tgSGKT~Tl------~G~~~-~~~~~~Gli~r~~~~lf~~~~~ 41 (267)
.+||+|||||.|+ .|... --.-.+++=...+..+|.-+..
T Consensus 37 ~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~ril~G~~~ 83 (231)
T PF12774_consen 37 LSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLSRILKGLAQ 83 (231)
T ss_dssp EESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHHHHHHHHHH
T ss_pred CcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHHHHHHHHhh
Confidence 4799999999998 22100 0011234445666666665433
No 151
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=61.69 E-value=2.6 Score=37.87 Aligned_cols=13 Identities=54% Similarity=0.820 Sum_probs=11.8
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-||++|+|||+..
T Consensus 161 L~GppGtGKT~la 173 (364)
T TIGR01242 161 LYGPPGTGKTLLA 173 (364)
T ss_pred EECCCCCCHHHHH
Confidence 4899999999987
No 152
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=61.66 E-value=2.7 Score=37.04 Aligned_cols=13 Identities=38% Similarity=0.667 Sum_probs=12.1
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-||+.|||||.+|
T Consensus 28 L~G~~GsGKS~~L 40 (309)
T PF10236_consen 28 LTGERGSGKSVLL 40 (309)
T ss_pred EECCCCCCHHHHH
Confidence 4899999999999
No 153
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=61.62 E-value=2.3 Score=34.63 Aligned_cols=13 Identities=38% Similarity=0.549 Sum_probs=10.6
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
.-|+.|||||+.+
T Consensus 20 ~aG~~GsGKSt~~ 32 (199)
T PF06414_consen 20 IAGQPGSGKSTLA 32 (199)
T ss_dssp EES-TTSTTHHHH
T ss_pred EeCCCCCCHHHHH
Confidence 4699999999988
No 154
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=61.27 E-value=2.7 Score=36.61 Aligned_cols=13 Identities=46% Similarity=0.675 Sum_probs=11.9
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
=||+.|+|||+..
T Consensus 35 l~Gp~G~GKT~la 47 (305)
T TIGR00635 35 LYGPPGLGKTTLA 47 (305)
T ss_pred EECCCCCCHHHHH
Confidence 3899999999998
No 155
>PF05729 NACHT: NACHT domain
Probab=61.16 E-value=2.8 Score=32.26 Aligned_cols=13 Identities=38% Similarity=0.664 Sum_probs=11.8
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-+|..|+|||..+
T Consensus 5 I~G~~G~GKStll 17 (166)
T PF05729_consen 5 ISGEPGSGKSTLL 17 (166)
T ss_pred EECCCCCChHHHH
Confidence 3799999999999
No 156
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=61.07 E-value=3.5 Score=37.33 Aligned_cols=14 Identities=21% Similarity=0.472 Sum_probs=12.4
Q ss_pred CcccCCccCccccc
Q 024439 1 MAYGQTGTGKTYTL 14 (267)
Q Consensus 1 ~ayG~tgSGKT~Tl 14 (267)
+.+|++|||||.++
T Consensus 3 lv~g~tGsGKt~~~ 16 (384)
T cd01126 3 LVFAPTRSGKGVGF 16 (384)
T ss_pred eEecCCCCCCccEE
Confidence 46899999999886
No 157
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=60.79 E-value=2.7 Score=33.06 Aligned_cols=13 Identities=38% Similarity=0.493 Sum_probs=11.3
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-.|++|||||.++
T Consensus 29 i~~~~GsGKT~~~ 41 (201)
T smart00487 29 LAAPTGSGKTLAA 41 (201)
T ss_pred EECCCCCchhHHH
Confidence 3689999999987
No 158
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=60.75 E-value=2.8 Score=33.35 Aligned_cols=12 Identities=42% Similarity=0.684 Sum_probs=11.2
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|++|||||..+
T Consensus 7 ~G~sGsGKttl~ 18 (179)
T TIGR02322 7 VGPSGAGKDTLL 18 (179)
T ss_pred ECCCCCCHHHHH
Confidence 599999999998
No 159
>PRK08233 hypothetical protein; Provisional
Probab=60.65 E-value=3 Score=33.01 Aligned_cols=12 Identities=33% Similarity=0.324 Sum_probs=10.6
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
-|++|||||+..
T Consensus 9 ~G~~GsGKtTla 20 (182)
T PRK08233 9 AAVSGGGKTTLT 20 (182)
T ss_pred ECCCCCCHHHHH
Confidence 499999999877
No 160
>PRK06547 hypothetical protein; Provisional
Probab=60.62 E-value=3 Score=33.33 Aligned_cols=12 Identities=42% Similarity=0.634 Sum_probs=10.9
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
+|++|||||+..
T Consensus 21 ~G~~GsGKTt~a 32 (172)
T PRK06547 21 DGRSGSGKTTLA 32 (172)
T ss_pred ECCCCCCHHHHH
Confidence 599999999986
No 161
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=60.28 E-value=3.2 Score=36.70 Aligned_cols=12 Identities=50% Similarity=0.725 Sum_probs=10.3
Q ss_pred cccCCccCcccc
Q 024439 2 AYGQTGTGKTYT 13 (267)
Q Consensus 2 ayG~tgSGKT~T 13 (267)
-.||||||||+.
T Consensus 102 LiGPTGsGKTlL 113 (408)
T COG1219 102 LIGPTGSGKTLL 113 (408)
T ss_pred EECCCCCcHHHH
Confidence 369999999975
No 162
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=60.21 E-value=2.8 Score=37.11 Aligned_cols=13 Identities=46% Similarity=0.675 Sum_probs=12.0
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-||++|+|||+..
T Consensus 56 l~GppG~GKT~la 68 (328)
T PRK00080 56 LYGPPGLGKTTLA 68 (328)
T ss_pred EECCCCccHHHHH
Confidence 4899999999998
No 163
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=59.81 E-value=2.9 Score=37.21 Aligned_cols=41 Identities=17% Similarity=0.119 Sum_probs=26.3
Q ss_pred EEEEecCceeecCCCCCCCcCcccCCCCCCccCCCCeEEEeCCHHHHHHHHHH
Q 024439 50 YLQLYMESIQDLLAPEKVNIPINEDPKTGEVSLPGATVVKLRDLDHLLQLLQV 102 (267)
Q Consensus 50 ~~EIy~e~v~DLL~~~~~~~~i~~~~~~g~~~i~~l~~~~v~s~~e~~~~l~~ 102 (267)
+-|+++.+.+|||...+.-. .| ++..++-.|+-|+..-+..
T Consensus 254 VGEVRG~Ea~dLL~AmnTGH-------dG-----~~~TlHans~~ea~~rle~ 294 (355)
T COG4962 254 VGEVRGVEALDLLQAMNTGH-------DG-----GMGTLHANSPREALTRLEQ 294 (355)
T ss_pred EEEecCccHHHHHHHhccCC-------CC-----cceeeccCCHHHHHHHHHH
Confidence 45899999999998533221 12 2456667788777655544
No 164
>PRK13764 ATPase; Provisional
Probab=59.57 E-value=3 Score=40.18 Aligned_cols=13 Identities=31% Similarity=0.429 Sum_probs=11.8
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-.|+||||||+++
T Consensus 262 IsG~TGSGKTTll 274 (602)
T PRK13764 262 IAGAPGAGKSTFA 274 (602)
T ss_pred EECCCCCCHHHHH
Confidence 4699999999999
No 165
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=58.87 E-value=3.1 Score=40.48 Aligned_cols=13 Identities=62% Similarity=0.759 Sum_probs=11.8
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-.|+.|||||||+
T Consensus 178 I~GpPGTGKT~t~ 190 (637)
T TIGR00376 178 IHGPPGTGKTRTL 190 (637)
T ss_pred EEcCCCCCHHHHH
Confidence 3699999999998
No 166
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=58.61 E-value=3.4 Score=32.24 Aligned_cols=13 Identities=31% Similarity=0.514 Sum_probs=10.6
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-.|++|||||+..
T Consensus 3 l~G~~GsGKSTla 15 (163)
T TIGR01313 3 LMGVAGSGKSTIA 15 (163)
T ss_pred EECCCCCCHHHHH
Confidence 3699999999665
No 167
>PRK07261 topology modulation protein; Provisional
Probab=58.39 E-value=3.5 Score=32.80 Aligned_cols=13 Identities=31% Similarity=0.511 Sum_probs=11.3
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-.|++|||||+-.
T Consensus 5 i~G~~GsGKSTla 17 (171)
T PRK07261 5 IIGYSGSGKSTLA 17 (171)
T ss_pred EEcCCCCCHHHHH
Confidence 3699999999877
No 168
>PRK05480 uridine/cytidine kinase; Provisional
Probab=58.11 E-value=3.3 Score=33.94 Aligned_cols=12 Identities=42% Similarity=0.617 Sum_probs=10.4
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
-|++|||||+..
T Consensus 12 ~G~sGsGKTTl~ 23 (209)
T PRK05480 12 AGGSGSGKTTVA 23 (209)
T ss_pred ECCCCCCHHHHH
Confidence 389999999777
No 169
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=57.88 E-value=3.3 Score=38.78 Aligned_cols=12 Identities=58% Similarity=0.747 Sum_probs=11.3
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|++|+|||+|+
T Consensus 262 vGpnGvGKTTTi 273 (484)
T PRK06995 262 MGPTGVGKTTTT 273 (484)
T ss_pred ECCCCccHHHHH
Confidence 599999999998
No 170
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=57.75 E-value=3.3 Score=39.19 Aligned_cols=13 Identities=46% Similarity=0.657 Sum_probs=12.0
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-+||+|+|||.|+
T Consensus 50 LtGP~G~GKtttv 62 (519)
T PF03215_consen 50 LTGPSGCGKTTTV 62 (519)
T ss_pred EECCCCCCHHHHH
Confidence 4799999999998
No 171
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=57.70 E-value=3.4 Score=38.10 Aligned_cols=12 Identities=67% Similarity=0.869 Sum_probs=11.3
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|++|+|||+|+
T Consensus 227 vGptGvGKTTt~ 238 (424)
T PRK05703 227 VGPTGVGKTTTL 238 (424)
T ss_pred ECCCCCCHHHHH
Confidence 599999999998
No 172
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=57.64 E-value=3.3 Score=32.93 Aligned_cols=13 Identities=31% Similarity=0.493 Sum_probs=11.5
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-+|+.|||||+..
T Consensus 4 i~G~pGsGKst~a 16 (183)
T TIGR01359 4 VLGGPGSGKGTQC 16 (183)
T ss_pred EECCCCCCHHHHH
Confidence 5799999999975
No 173
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=57.04 E-value=3.5 Score=33.11 Aligned_cols=12 Identities=33% Similarity=0.631 Sum_probs=11.2
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|++|||||+.+
T Consensus 27 ~G~nG~GKSTLl 38 (176)
T cd03238 27 TGVSGSGKSTLV 38 (176)
T ss_pred ECCCCCCHHHHH
Confidence 599999999998
No 174
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=56.74 E-value=3.7 Score=31.50 Aligned_cols=13 Identities=31% Similarity=0.503 Sum_probs=11.3
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-.|+.|||||+.-
T Consensus 4 l~G~~GsGKST~a 16 (150)
T cd02021 4 VMGVSGSGKSTVG 16 (150)
T ss_pred EEcCCCCCHHHHH
Confidence 3699999999886
No 175
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=56.57 E-value=3.9 Score=27.10 Aligned_cols=12 Identities=33% Similarity=0.598 Sum_probs=10.4
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||...
T Consensus 5 ~G~~gsGKst~~ 16 (69)
T cd02019 5 TGGSGSGKSTVA 16 (69)
T ss_pred ECCCCCCHHHHH
Confidence 499999998877
No 176
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=56.23 E-value=3.8 Score=35.57 Aligned_cols=12 Identities=50% Similarity=0.661 Sum_probs=11.0
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
+|++|||||+..
T Consensus 64 ~G~pGTGKT~lA 75 (284)
T TIGR02880 64 TGNPGTGKTTVA 75 (284)
T ss_pred EcCCCCCHHHHH
Confidence 799999999876
No 177
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=56.22 E-value=3.6 Score=35.97 Aligned_cols=12 Identities=42% Similarity=0.421 Sum_probs=11.4
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
||+.|+|||+.+
T Consensus 49 ~G~~G~GKT~la 60 (316)
T PHA02544 49 SPSPGTGKTTVA 60 (316)
T ss_pred eCcCCCCHHHHH
Confidence 799999999988
No 178
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=56.17 E-value=3.7 Score=33.03 Aligned_cols=12 Identities=42% Similarity=0.733 Sum_probs=11.0
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|++|||||..+
T Consensus 8 ~G~sGsGKsTl~ 19 (186)
T PRK10078 8 MGPSGSGKDSLL 19 (186)
T ss_pred ECCCCCCHHHHH
Confidence 599999999987
No 179
>PHA00729 NTP-binding motif containing protein
Probab=56.07 E-value=4 Score=34.22 Aligned_cols=13 Identities=38% Similarity=0.713 Sum_probs=11.7
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-+|.+|+||||..
T Consensus 22 ItG~pGvGKT~LA 34 (226)
T PHA00729 22 IFGKQGSGKTTYA 34 (226)
T ss_pred EECCCCCCHHHHH
Confidence 4799999999987
No 180
>CHL00181 cbbX CbbX; Provisional
Probab=56.00 E-value=4 Score=35.53 Aligned_cols=12 Identities=50% Similarity=0.648 Sum_probs=11.3
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
||++|+|||+..
T Consensus 65 ~G~pGtGKT~lA 76 (287)
T CHL00181 65 TGSPGTGKTTVA 76 (287)
T ss_pred ECCCCCCHHHHH
Confidence 799999999987
No 181
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=55.87 E-value=8.8 Score=32.91 Aligned_cols=45 Identities=27% Similarity=0.346 Sum_probs=27.7
Q ss_pred CcccCCccCcccccccc------------CCCC-CCCcChHHHHHHHHHHhcccCCCe
Q 024439 1 MAYGQTGTGKTYTLGRL------------GKDD-ASERGIMVRALEDIISSMSVTSDS 45 (267)
Q Consensus 1 ~ayG~tgSGKT~Tl~G~------------~~~~-~~~~Gli~r~~~~lf~~~~~~~~~ 45 (267)
+-||+.|+|||-..-.. |.+- ..--|==||.++++|....+....
T Consensus 193 llygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrlakenaps 250 (408)
T KOG0727|consen 193 LLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPS 250 (408)
T ss_pred EEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHHHhccCCc
Confidence 46999999999654110 0000 001244489999999987766543
No 182
>PRK08118 topology modulation protein; Reviewed
Probab=55.74 E-value=4.1 Score=32.28 Aligned_cols=13 Identities=31% Similarity=0.483 Sum_probs=10.5
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-.|+.|||||+..
T Consensus 6 I~G~~GsGKSTla 18 (167)
T PRK08118 6 LIGSGGSGKSTLA 18 (167)
T ss_pred EECCCCCCHHHHH
Confidence 3699999999654
No 183
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=55.70 E-value=3.8 Score=33.59 Aligned_cols=12 Identities=42% Similarity=0.567 Sum_probs=10.3
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|++|||||+.+
T Consensus 12 ~G~sGsGKSTl~ 23 (207)
T TIGR00235 12 GGGSGSGKTTVA 23 (207)
T ss_pred ECCCCCCHHHHH
Confidence 599999999765
No 184
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=55.51 E-value=4 Score=34.48 Aligned_cols=12 Identities=42% Similarity=0.587 Sum_probs=10.6
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||+-+
T Consensus 2 iGpaGSGKTT~~ 13 (238)
T PF03029_consen 2 IGPAGSGKTTFC 13 (238)
T ss_dssp EESTTSSHHHHH
T ss_pred CCCCCCCHHHHH
Confidence 599999999877
No 185
>PF04466 Terminase_3: Phage terminase large subunit; InterPro: IPR006701 Initiation of packaging of double-stranded viral DNA involves the specific interaction of the prohead with viral DNA in a process mediated by a phage-encoded terminase protein. The terminase enzymes are usually hetero-oligomers composed of a small and a large subunit. This region is found on the large subunit and possesses an endonuclease and ATPase activity that requires Mg2+ and a neutral or slightly basic reaction. This region is also found in bacterial sequences [, ].; GO: 0006323 DNA packaging; PDB: 2WBN_A 2WC9_A.
Probab=55.21 E-value=4 Score=37.17 Aligned_cols=14 Identities=29% Similarity=0.520 Sum_probs=0.0
Q ss_pred CcccCCccCccccc
Q 024439 1 MAYGQTGTGKTYTL 14 (267)
Q Consensus 1 ~ayG~tgSGKT~Tl 14 (267)
++||..|||||+++
T Consensus 6 v~~GGrGS~KS~~~ 19 (387)
T PF04466_consen 6 VLKGGRGSGKSSFI 19 (387)
T ss_dssp --------------
T ss_pred EEECCCCchHHHHH
Confidence 47999999999998
No 186
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=54.93 E-value=4 Score=38.13 Aligned_cols=13 Identities=38% Similarity=0.690 Sum_probs=11.8
Q ss_pred ccCCccCcccccc
Q 024439 3 YGQTGTGKTYTLG 15 (267)
Q Consensus 3 yG~tgSGKT~Tl~ 15 (267)
+|++|||||+.|-
T Consensus 38 ~G~SGsGKSTLLr 50 (504)
T TIGR03238 38 CGSSGDGKSEILA 50 (504)
T ss_pred ECCCCCCHHHHHh
Confidence 6999999999983
No 187
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=54.89 E-value=3.7 Score=37.65 Aligned_cols=14 Identities=57% Similarity=0.814 Sum_probs=12.2
Q ss_pred CcccCCccCccccc
Q 024439 1 MAYGQTGTGKTYTL 14 (267)
Q Consensus 1 ~ayG~tgSGKT~Tl 14 (267)
+.+|+||||||..|
T Consensus 46 ~i~g~tGsGKt~~i 59 (410)
T cd01127 46 MIIGTTGTGKTTQI 59 (410)
T ss_pred EEEcCCCCCHHHHH
Confidence 35899999999887
No 188
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=54.59 E-value=4.2 Score=33.88 Aligned_cols=12 Identities=58% Similarity=0.681 Sum_probs=9.9
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
+|+||||||..-
T Consensus 7 ~GpT~tGKt~~a 18 (233)
T PF01745_consen 7 VGPTGTGKTALA 18 (233)
T ss_dssp E-STTSSHHHHH
T ss_pred ECCCCCChhHHH
Confidence 799999999875
No 189
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=54.51 E-value=8.9 Score=33.86 Aligned_cols=43 Identities=23% Similarity=0.190 Sum_probs=29.7
Q ss_pred cccCCccCccccc------cccCC-------CCCCCcChHHHHHHHHHHhcccCCC
Q 024439 2 AYGQTGTGKTYTL------GRLGK-------DDASERGIMVRALEDIISSMSVTSD 44 (267)
Q Consensus 2 ayG~tgSGKT~Tl------~G~~~-------~~~~~~Gli~r~~~~lf~~~~~~~~ 44 (267)
-||+.|+|||+-. .|.++ -....-|=--|.+++.|....++..
T Consensus 171 l~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRemf~yA~~~~p 226 (388)
T KOG0651|consen 171 LYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESARLIRDMFRYAREVIP 226 (388)
T ss_pred EeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHHHHHHHHHhhhCc
Confidence 4999999999864 22211 1123346667999999999877655
No 190
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=54.46 E-value=4.6 Score=35.14 Aligned_cols=12 Identities=42% Similarity=0.916 Sum_probs=11.3
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
||.+|||||..+
T Consensus 30 FG~SGsGKTsli 41 (352)
T COG4148 30 FGPSGSGKTSLI 41 (352)
T ss_pred ecCCCCChhhHH
Confidence 899999999987
No 191
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=54.24 E-value=4.6 Score=36.78 Aligned_cols=13 Identities=54% Similarity=0.820 Sum_probs=11.6
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-||++|+|||+..
T Consensus 170 L~GppGtGKT~lA 182 (389)
T PRK03992 170 LYGPPGTGKTLLA 182 (389)
T ss_pred EECCCCCChHHHH
Confidence 4899999999986
No 192
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=54.22 E-value=5.8 Score=34.57 Aligned_cols=12 Identities=42% Similarity=0.739 Sum_probs=11.2
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|.+|||||..+
T Consensus 12 ~G~~GsGKtt~~ 23 (288)
T PRK05416 12 TGLSGAGKSVAL 23 (288)
T ss_pred ECCCCCcHHHHH
Confidence 699999999998
No 193
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=54.20 E-value=3.8 Score=41.58 Aligned_cols=13 Identities=54% Similarity=0.792 Sum_probs=12.0
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-+|+||||||+++
T Consensus 480 I~G~TGSGKS~l~ 492 (893)
T TIGR03744 480 ILGPTGAGKSATL 492 (893)
T ss_pred EECCCCCCHHHHH
Confidence 5799999999998
No 194
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=54.10 E-value=8.3 Score=39.02 Aligned_cols=13 Identities=54% Similarity=0.680 Sum_probs=12.3
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-||++|+|||.|+
T Consensus 786 IyG~PGTGKTATV 798 (1164)
T PTZ00112 786 ISGMPGTGKTATV 798 (1164)
T ss_pred EECCCCCCHHHHH
Confidence 5999999999999
No 195
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=53.66 E-value=4.4 Score=34.35 Aligned_cols=12 Identities=42% Similarity=0.803 Sum_probs=10.8
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
-|++|||||..+
T Consensus 19 IG~sGSGKT~li 30 (241)
T PF04665_consen 19 IGKSGSGKTTLI 30 (241)
T ss_pred ECCCCCCHHHHH
Confidence 499999999987
No 196
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=53.38 E-value=4.4 Score=38.12 Aligned_cols=13 Identities=46% Similarity=0.593 Sum_probs=11.9
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-||+.|+|||+..
T Consensus 93 L~GppGtGKT~la 105 (495)
T TIGR01241 93 LVGPPGTGKTLLA 105 (495)
T ss_pred EECCCCCCHHHHH
Confidence 4899999999997
No 197
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=53.16 E-value=4.5 Score=36.80 Aligned_cols=12 Identities=75% Similarity=0.960 Sum_probs=11.4
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|++|+|||+|+
T Consensus 212 vGptGvGKTTt~ 223 (407)
T PRK12726 212 IGQTGVGKTTTL 223 (407)
T ss_pred ECCCCCCHHHHH
Confidence 699999999999
No 198
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=53.09 E-value=16 Score=37.31 Aligned_cols=12 Identities=42% Similarity=0.717 Sum_probs=10.8
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
+|++|||||..|
T Consensus 31 ~G~nGsGKSSIl 42 (908)
T COG0419 31 VGPNGAGKSSIL 42 (908)
T ss_pred ECCCCCcHHHHH
Confidence 699999999876
No 199
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=53.03 E-value=4.5 Score=37.23 Aligned_cols=12 Identities=58% Similarity=0.733 Sum_probs=11.4
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|++|+|||+|+
T Consensus 197 vGpnG~GKTTtl 208 (420)
T PRK14721 197 IGPTGVGKTTTT 208 (420)
T ss_pred ECCCCCCHHHHH
Confidence 599999999999
No 200
>PRK00300 gmk guanylate kinase; Provisional
Probab=52.99 E-value=4.5 Score=32.85 Aligned_cols=12 Identities=33% Similarity=0.642 Sum_probs=10.5
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|++|||||..+
T Consensus 11 ~G~sGsGKstl~ 22 (205)
T PRK00300 11 SGPSGAGKSTLV 22 (205)
T ss_pred ECCCCCCHHHHH
Confidence 599999999766
No 201
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.43 E-value=75 Score=25.04 Aligned_cols=61 Identities=30% Similarity=0.346 Sum_probs=35.8
Q ss_pred eeeeEEEEECCCCccccccCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCC------CCCCCCc--hhhHhhHHhc-CCC
Q 024439 161 RKSKLLIVDLAGSERIDKSGSEGPLLEEAKFINLSLSSLGKCINALAENSP------HIPTRDS--KLTRLLRDSF-GGS 231 (267)
Q Consensus 161 ~~s~l~fvDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~~l~~~~~------~ipyr~S--kLT~lL~~~l-~g~ 231 (267)
+.-+|++.|.||-|+ +..|-+....+.. .+.-||| .||.+|.|.= -..
T Consensus 56 K~vKLQIWDTAGQEr-----------------------FRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs 112 (214)
T KOG0086|consen 56 KTVKLQIWDTAGQER-----------------------FRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLAS 112 (214)
T ss_pred cEEEEEEeecccHHH-----------------------HHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCC
Confidence 456899999999886 3333344333332 2445555 6788887763 233
Q ss_pred CeEEEEEEeCCCC
Q 024439 232 ARTSLIITVGPSA 244 (267)
Q Consensus 232 ~~~~~I~~vsp~~ 244 (267)
..+++|.|=+-.+
T Consensus 113 ~nIvviL~GnKkD 125 (214)
T KOG0086|consen 113 PNIVVILCGNKKD 125 (214)
T ss_pred CcEEEEEeCChhh
Confidence 5555565554443
No 202
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=52.32 E-value=4.6 Score=30.83 Aligned_cols=12 Identities=42% Similarity=0.686 Sum_probs=10.4
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|++|||||..+
T Consensus 5 ~GpsGsGKstl~ 16 (137)
T cd00071 5 SGPSGVGKSTLL 16 (137)
T ss_pred ECCCCCCHHHHH
Confidence 599999999765
No 203
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=52.23 E-value=4.6 Score=35.72 Aligned_cols=12 Identities=50% Similarity=0.745 Sum_probs=11.3
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|++|+|||+|+
T Consensus 120 vGpnGsGKTTt~ 131 (318)
T PRK10416 120 VGVNGVGKTTTI 131 (318)
T ss_pred ECCCCCcHHHHH
Confidence 599999999999
No 204
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=52.06 E-value=4.7 Score=35.19 Aligned_cols=12 Identities=50% Similarity=0.756 Sum_probs=11.1
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||++|
T Consensus 37 lG~NGAGKTTll 48 (293)
T COG1131 37 LGPNGAGKTTLL 48 (293)
T ss_pred ECCCCCCHHHHH
Confidence 489999999998
No 205
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=52.04 E-value=4.6 Score=36.95 Aligned_cols=12 Identities=67% Similarity=0.880 Sum_probs=11.4
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|++|+|||+|+
T Consensus 247 VGptGvGKTTTi 258 (436)
T PRK11889 247 IGPTGVGKTTTL 258 (436)
T ss_pred ECCCCCcHHHHH
Confidence 599999999999
No 206
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=52.04 E-value=4.8 Score=36.83 Aligned_cols=13 Identities=54% Similarity=0.815 Sum_probs=11.9
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-||+.|+|||+..
T Consensus 184 L~GppGTGKT~LA 196 (398)
T PTZ00454 184 LYGPPGTGKTMLA 196 (398)
T ss_pred EECCCCCCHHHHH
Confidence 4899999999987
No 207
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=51.98 E-value=4.8 Score=32.99 Aligned_cols=12 Identities=50% Similarity=0.792 Sum_probs=11.3
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
+|+.|||||..+
T Consensus 28 ~G~NGsGKTTLl 39 (204)
T cd03240 28 VGQNGAGKTTII 39 (204)
T ss_pred ECCCCCCHHHHH
Confidence 699999999998
No 208
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=51.87 E-value=6.8 Score=35.62 Aligned_cols=13 Identities=46% Similarity=0.756 Sum_probs=10.7
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
..|.+|||||.+|
T Consensus 20 i~G~~GsGKT~~i 32 (386)
T PF10412_consen 20 IIGATGSGKTQAI 32 (386)
T ss_dssp EEE-TTSSHHHHH
T ss_pred EECCCCCCHHHHH
Confidence 4799999999888
No 209
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=51.83 E-value=4.7 Score=37.31 Aligned_cols=13 Identities=54% Similarity=0.820 Sum_probs=11.8
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-||++|+|||++.
T Consensus 222 L~GPPGTGKT~LA 234 (438)
T PTZ00361 222 LYGPPGTGKTLLA 234 (438)
T ss_pred EECCCCCCHHHHH
Confidence 4899999999987
No 210
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=51.53 E-value=12 Score=31.66 Aligned_cols=26 Identities=19% Similarity=0.404 Sum_probs=19.1
Q ss_pred cccCCccCccccccccCCCCCCCcChHHHHHHHHHHhcccC
Q 024439 2 AYGQTGTGKTYTLGRLGKDDASERGIMVRALEDIISSMSVT 42 (267)
Q Consensus 2 ayG~tgSGKT~Tl~G~~~~~~~~~Gli~r~~~~lf~~~~~~ 42 (267)
..||.|||||+=+.| +.++|+++++.
T Consensus 7 VIGPPgSGKsTYc~g---------------~~~fls~~gr~ 32 (290)
T KOG1533|consen 7 VIGPPGSGKSTYCNG---------------MSQFLSAIGRP 32 (290)
T ss_pred EEcCCCCCccchhhh---------------HHHHHHHhCCc
Confidence 358999999987744 45667777665
No 211
>PRK06217 hypothetical protein; Validated
Probab=51.45 E-value=5.2 Score=32.02 Aligned_cols=12 Identities=33% Similarity=0.437 Sum_probs=10.6
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|.+|||||+.-
T Consensus 7 ~G~~GsGKSTla 18 (183)
T PRK06217 7 TGASGSGTTTLG 18 (183)
T ss_pred ECCCCCCHHHHH
Confidence 699999999876
No 212
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=51.22 E-value=4.9 Score=34.96 Aligned_cols=13 Identities=46% Similarity=0.537 Sum_probs=11.8
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
=||+.|+|||+++
T Consensus 43 l~G~~G~GKt~~~ 55 (319)
T PRK00440 43 FAGPPGTGKTTAA 55 (319)
T ss_pred EECCCCCCHHHHH
Confidence 3899999999988
No 213
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=50.98 E-value=5 Score=32.70 Aligned_cols=12 Identities=33% Similarity=0.722 Sum_probs=11.1
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
+|++|||||..+
T Consensus 28 ~G~nGsGKStll 39 (197)
T cd03278 28 VGPNGSGKSNII 39 (197)
T ss_pred ECCCCCCHHHHH
Confidence 699999999988
No 214
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=50.84 E-value=10 Score=31.56 Aligned_cols=30 Identities=27% Similarity=0.344 Sum_probs=22.4
Q ss_pred cCCccCccccc------cccCCCCCCCcChHHHHHHHHH
Q 024439 4 GQTGTGKTYTL------GRLGKDDASERGIMVRALEDII 36 (267)
Q Consensus 4 G~tgSGKT~Tl------~G~~~~~~~~~Gli~r~~~~lf 36 (267)
||+|||||..- +|+ ..-+-|.+.|++...-
T Consensus 11 GPagsGKsTvak~lA~~Lg~---~yldTGamYRa~a~~~ 46 (222)
T COG0283 11 GPAGSGKSTVAKILAEKLGF---HYLDTGAMYRAVALAA 46 (222)
T ss_pred CCCccChHHHHHHHHHHhCC---CeecccHHHHHHHHHH
Confidence 99999999986 332 1234699999987765
No 215
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=50.74 E-value=5.1 Score=31.75 Aligned_cols=12 Identities=33% Similarity=0.625 Sum_probs=10.9
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|++|||||..+
T Consensus 7 ~G~~GsGKsTl~ 18 (180)
T TIGR03263 7 SGPSGVGKSTLV 18 (180)
T ss_pred ECCCCCCHHHHH
Confidence 699999999976
No 216
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=50.73 E-value=9.3 Score=33.20 Aligned_cols=14 Identities=36% Similarity=0.866 Sum_probs=11.9
Q ss_pred CcccCCccCccccc
Q 024439 1 MAYGQTGTGKTYTL 14 (267)
Q Consensus 1 ~ayG~tgSGKT~Tl 14 (267)
+-|||+|+||-+.+
T Consensus 38 l~yGPSGaGKKTri 51 (351)
T KOG2035|consen 38 LVYGPSGAGKKTRI 51 (351)
T ss_pred EEECCCCCCchhhH
Confidence 36999999998776
No 217
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=50.47 E-value=5.1 Score=35.17 Aligned_cols=12 Identities=58% Similarity=0.736 Sum_probs=10.9
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
-|++|||||..+
T Consensus 150 ~G~tGsGKTTll 161 (308)
T TIGR02788 150 SGGTGSGKTTFL 161 (308)
T ss_pred ECCCCCCHHHHH
Confidence 499999999987
No 218
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=50.07 E-value=5.4 Score=32.83 Aligned_cols=12 Identities=50% Similarity=0.789 Sum_probs=11.1
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||..|
T Consensus 34 ~G~NGsGKSTll 45 (213)
T cd03279 34 CGPTGAGKSTIL 45 (213)
T ss_pred ECCCCCCHHHHH
Confidence 599999999998
No 219
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=49.96 E-value=5.3 Score=31.29 Aligned_cols=12 Identities=33% Similarity=0.534 Sum_probs=10.9
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|++|||||+.+
T Consensus 5 ~G~~gsGKTtl~ 16 (155)
T TIGR00176 5 VGPKNSGKTTLI 16 (155)
T ss_pred ECCCCCCHHHHH
Confidence 499999999988
No 220
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=49.46 E-value=5.7 Score=34.88 Aligned_cols=46 Identities=22% Similarity=0.372 Sum_probs=28.0
Q ss_pred CcccCCccCccccc-----------cccCCCC--CCCcChHHHHHHHHHHhcccCCCeE
Q 024439 1 MAYGQTGTGKTYTL-----------GRLGKDD--ASERGIMVRALEDIISSMSVTSDSV 46 (267)
Q Consensus 1 ~ayG~tgSGKT~Tl-----------~G~~~~~--~~~~Gli~r~~~~lf~~~~~~~~~v 46 (267)
+-||+.|+||||.- |.....+ ..=-|=--+.+..||+...++..++
T Consensus 170 LLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESEkLVknLFemARe~kPSI 228 (439)
T KOG0739|consen 170 LLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKNLFEMARENKPSI 228 (439)
T ss_pred EEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHHHHHHHHHHHHHhcCCcE
Confidence 35999999999965 1110000 0001444678899998877766543
No 221
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=49.32 E-value=7.9 Score=32.91 Aligned_cols=13 Identities=38% Similarity=0.721 Sum_probs=11.4
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-||..|+|||..+
T Consensus 90 LwGaRGtGKSSLV 102 (287)
T COG2607 90 LWGARGTGKSSLV 102 (287)
T ss_pred EecCCCCChHHHH
Confidence 4899999999877
No 222
>PRK00131 aroK shikimate kinase; Reviewed
Probab=49.16 E-value=6.1 Score=30.85 Aligned_cols=13 Identities=31% Similarity=0.337 Sum_probs=11.4
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-+|+.|||||+.-
T Consensus 9 l~G~~GsGKstla 21 (175)
T PRK00131 9 LIGFMGAGKSTIG 21 (175)
T ss_pred EEcCCCCCHHHHH
Confidence 4799999999985
No 223
>COG1485 Predicted ATPase [General function prediction only]
Probab=49.09 E-value=8.6 Score=34.39 Aligned_cols=75 Identities=17% Similarity=0.234 Sum_probs=45.3
Q ss_pred ccCCccCccccccccCCCCCC---CcChHHHHHHHHHHhcccCCCeEEEEEEEEecCceeecCCCCCCCcCcccCCCCCC
Q 024439 3 YGQTGTGKTYTLGRLGKDDAS---ERGIMVRALEDIISSMSVTSDSVEVSYLQLYMESIQDLLAPEKVNIPINEDPKTGE 79 (267)
Q Consensus 3 yG~tgSGKT~Tl~G~~~~~~~---~~Gli~r~~~~lf~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~i~~~~~~g~ 79 (267)
||+-|.|||+.|-..-..-+. .+.=..+++.++++.+.... +++ |.|.+-. +...++
T Consensus 71 ~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~-----------g~~--dpl~~iA-------~~~~~~ 130 (367)
T COG1485 71 WGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQ-----------GQT--DPLPPIA-------DELAAE 130 (367)
T ss_pred ECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHc-----------CCC--CccHHHH-------HHHHhc
Confidence 899999999999432111111 22334478888887765532 222 4443311 112344
Q ss_pred ccCCCCeEEEeCCHHHHH
Q 024439 80 VSLPGATVVKLRDLDHLL 97 (267)
Q Consensus 80 ~~i~~l~~~~v~s~~e~~ 97 (267)
..+.-.-|.+|+++.|++
T Consensus 131 ~~vLCfDEF~VtDI~DAM 148 (367)
T COG1485 131 TRVLCFDEFEVTDIADAM 148 (367)
T ss_pred CCEEEeeeeeecChHHHH
Confidence 667777888999999976
No 224
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=49.08 E-value=5.7 Score=31.55 Aligned_cols=13 Identities=31% Similarity=0.442 Sum_probs=11.4
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-.|+.|||||+..
T Consensus 8 i~G~~GsGKsTl~ 20 (188)
T TIGR01360 8 IVGGPGSGKGTQC 20 (188)
T ss_pred EECCCCCCHHHHH
Confidence 3699999999986
No 225
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=48.99 E-value=5.8 Score=39.31 Aligned_cols=12 Identities=58% Similarity=0.722 Sum_probs=11.4
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|++|+|||+|+
T Consensus 191 VGpnGvGKTTTi 202 (767)
T PRK14723 191 VGPTGVGKTTTT 202 (767)
T ss_pred ECCCCCcHHHHH
Confidence 699999999998
No 226
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=48.69 E-value=6.7 Score=33.87 Aligned_cols=42 Identities=21% Similarity=0.344 Sum_probs=24.6
Q ss_pred CcccCCccCccccccccCCCC-------------CCCcChHHHHHHHHHHhcccC
Q 024439 1 MAYGQTGTGKTYTLGRLGKDD-------------ASERGIMVRALEDIISSMSVT 42 (267)
Q Consensus 1 ~ayG~tgSGKT~Tl~G~~~~~-------------~~~~Gli~r~~~~lf~~~~~~ 42 (267)
+.||+.|+|||-.--...... ..--|==-|.+++||+-...+
T Consensus 215 llygppgtgktl~aravanrtdacfirvigselvqkyvgegarmvrelf~martk 269 (435)
T KOG0729|consen 215 LLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTK 269 (435)
T ss_pred EEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHHHHHHHHHHhccc
Confidence 579999999997641100000 001133357899999876544
No 227
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=48.65 E-value=5.7 Score=31.90 Aligned_cols=12 Identities=42% Similarity=0.728 Sum_probs=10.7
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||..+
T Consensus 24 ~G~nGsGKSTLl 35 (190)
T TIGR01166 24 LGANGAGKSTLL 35 (190)
T ss_pred ECCCCCCHHHHH
Confidence 489999999887
No 228
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=48.61 E-value=5.5 Score=29.87 Aligned_cols=12 Identities=42% Similarity=0.722 Sum_probs=10.9
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||..+
T Consensus 17 ~G~nGsGKStLl 28 (137)
T PF00005_consen 17 VGPNGSGKSTLL 28 (137)
T ss_dssp EESTTSSHHHHH
T ss_pred EccCCCccccce
Confidence 599999999987
No 229
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=48.59 E-value=5.7 Score=33.51 Aligned_cols=13 Identities=38% Similarity=0.647 Sum_probs=11.6
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-+|++|||||+.+
T Consensus 35 i~G~nGsGKSTL~ 47 (235)
T COG1122 35 LIGPNGSGKSTLL 47 (235)
T ss_pred EECCCCCCHHHHH
Confidence 3799999999987
No 230
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=48.56 E-value=12 Score=29.53 Aligned_cols=52 Identities=17% Similarity=0.174 Sum_probs=31.0
Q ss_pred ccCCccCccccccccCCCCCCCcChHHHHHHHHHHhcccCCCeEEEEEEEEecCceeecCCCCCCCcCcccCC
Q 024439 3 YGQTGTGKTYTLGRLGKDDASERGIMVRALEDIISSMSVTSDSVEVSYLQLYMESIQDLLAPEKVNIPINEDP 75 (267)
Q Consensus 3 yG~tgSGKT~Tl~G~~~~~~~~~Gli~r~~~~lf~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~i~~~~ 75 (267)
.|.++||||..+ -++++.|- .++ +.++.+----.. .|+-.+.+...+.+...
T Consensus 8 vG~k~SGKTTLi--------------e~lv~~L~----~~G--~rVa~iKH~hh~-~~~D~~GkDs~r~~~aG 59 (161)
T COG1763 8 VGYKNSGKTTLI--------------EKLVRKLK----ARG--YRVATVKHAHHD-FDLDKPGKDTYRHRKAG 59 (161)
T ss_pred EecCCCChhhHH--------------HHHHHHHH----hCC--cEEEEEEecCCC-CCCCCCCCccchhhccc
Confidence 489999999988 33444443 223 355666554444 66766666655555543
No 231
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=48.52 E-value=6 Score=36.43 Aligned_cols=38 Identities=24% Similarity=0.336 Sum_probs=21.4
Q ss_pred ccCCccCccccccccCCCCCCCcChHHHHHHHHHHhccc
Q 024439 3 YGQTGTGKTYTLGRLGKDDASERGIMVRALEDIISSMSV 41 (267)
Q Consensus 3 yG~tgSGKT~Tl~G~~~~~~~~~Gli~r~~~~lf~~~~~ 41 (267)
.|++|+||||...+.+....-..| -+-.+..||..+..
T Consensus 215 lGp~GTGKThla~~l~~~~a~~sG-~f~T~a~Lf~~L~~ 252 (449)
T TIGR02688 215 LGPKGTGKSYIYNNLSPYVILISG-GTITVAKLFYNIST 252 (449)
T ss_pred ECCCCCCHHHHHHHHhHHHHHHcC-CcCcHHHHHHHHHH
Confidence 699999999988432221111223 22345566666544
No 232
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=48.25 E-value=6.7 Score=36.46 Aligned_cols=14 Identities=43% Similarity=0.788 Sum_probs=12.4
Q ss_pred CcccCCccCccccc
Q 024439 1 MAYGQTGTGKTYTL 14 (267)
Q Consensus 1 ~ayG~tgSGKT~Tl 14 (267)
+.+|++|||||.++
T Consensus 48 lvig~tgSGKt~~~ 61 (469)
T PF02534_consen 48 LVIGPTGSGKTTSF 61 (469)
T ss_pred EEEeCCCCCcccee
Confidence 46899999999987
No 233
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=48.25 E-value=5.4 Score=39.83 Aligned_cols=13 Identities=31% Similarity=0.777 Sum_probs=11.9
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
..|++|||||+++
T Consensus 435 I~G~tGsGKS~~~ 447 (797)
T TIGR02746 435 VVGGSGAGKSFFM 447 (797)
T ss_pred EEcCCCCCHHHHH
Confidence 4799999999999
No 234
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=48.09 E-value=5.9 Score=35.57 Aligned_cols=12 Identities=50% Similarity=0.753 Sum_probs=11.2
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|++|||||+.|
T Consensus 36 ~GpsGsGKSTLL 47 (353)
T TIGR03265 36 LGPSGCGKTTLL 47 (353)
T ss_pred ECCCCCCHHHHH
Confidence 699999999998
No 235
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=48.08 E-value=5.8 Score=34.23 Aligned_cols=12 Identities=50% Similarity=0.745 Sum_probs=11.1
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|++|+|||.|+
T Consensus 78 ~G~~G~GKTTt~ 89 (272)
T TIGR00064 78 VGVNGVGKTTTI 89 (272)
T ss_pred ECCCCCcHHHHH
Confidence 499999999999
No 236
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=47.98 E-value=6.7 Score=31.55 Aligned_cols=12 Identities=33% Similarity=0.573 Sum_probs=10.4
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|++|||||+--
T Consensus 6 lG~pGaGK~T~A 17 (178)
T COG0563 6 LGPPGAGKSTLA 17 (178)
T ss_pred ECCCCCCHHHHH
Confidence 699999999864
No 237
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=47.93 E-value=6.1 Score=33.43 Aligned_cols=12 Identities=42% Similarity=0.695 Sum_probs=11.1
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||..+
T Consensus 31 vG~NGsGKStll 42 (251)
T cd03273 31 TGLNGSGKSNIL 42 (251)
T ss_pred ECCCCCCHHHHH
Confidence 599999999997
No 238
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=47.90 E-value=13 Score=37.88 Aligned_cols=10 Identities=70% Similarity=1.112 Sum_probs=8.9
Q ss_pred CCccCccccc
Q 024439 5 QTGTGKTYTL 14 (267)
Q Consensus 5 ~tgSGKT~Tl 14 (267)
+||||||||+
T Consensus 67 ~TGtGKT~~~ 76 (986)
T PRK15483 67 ETGTGKTYVY 76 (986)
T ss_pred CCCCCHHHHH
Confidence 6999999966
No 239
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=47.85 E-value=6.4 Score=31.54 Aligned_cols=12 Identities=42% Similarity=0.578 Sum_probs=10.8
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
-|.+|||||+..
T Consensus 5 ~G~sgsGKttla 16 (179)
T cd02028 5 AGPSGSGKTTFA 16 (179)
T ss_pred ECCCCCCHHHHH
Confidence 489999999988
No 240
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=47.69 E-value=6 Score=32.19 Aligned_cols=12 Identities=42% Similarity=0.606 Sum_probs=10.8
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||..+
T Consensus 32 ~G~nGsGKSTLl 43 (205)
T cd03226 32 TGKNGAGKTTLA 43 (205)
T ss_pred ECCCCCCHHHHH
Confidence 599999999887
No 241
>PRK14531 adenylate kinase; Provisional
Probab=47.57 E-value=6 Score=31.69 Aligned_cols=13 Identities=31% Similarity=0.437 Sum_probs=11.4
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-+|+.|||||+..
T Consensus 7 i~G~pGsGKsT~~ 19 (183)
T PRK14531 7 FLGPPGAGKGTQA 19 (183)
T ss_pred EECCCCCCHHHHH
Confidence 4799999999885
No 242
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=47.56 E-value=6.1 Score=32.27 Aligned_cols=12 Identities=42% Similarity=0.722 Sum_probs=10.8
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||+.+
T Consensus 33 ~G~nGsGKSTLl 44 (211)
T cd03225 33 VGPNGSGKSTLL 44 (211)
T ss_pred ECCCCCCHHHHH
Confidence 499999999987
No 243
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=47.48 E-value=7 Score=31.85 Aligned_cols=12 Identities=50% Similarity=0.866 Sum_probs=11.0
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
||++|||||.-.
T Consensus 18 ~G~~GsGKT~l~ 29 (209)
T TIGR02237 18 YGPPGSGKTNIC 29 (209)
T ss_pred ECCCCCCHHHHH
Confidence 899999999876
No 244
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=47.47 E-value=6.1 Score=29.50 Aligned_cols=12 Identities=42% Similarity=0.800 Sum_probs=11.0
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||..+
T Consensus 2 ~G~~gsGKstl~ 13 (163)
T cd00880 2 FGRTNAGKSSLL 13 (163)
T ss_pred cCCCCCCHHHHH
Confidence 599999999998
No 245
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=47.24 E-value=6.2 Score=32.26 Aligned_cols=12 Identities=42% Similarity=0.722 Sum_probs=10.9
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||..+
T Consensus 31 ~G~nGsGKSTLl 42 (211)
T cd03264 31 LGPNGAGKTTLM 42 (211)
T ss_pred ECCCCCCHHHHH
Confidence 599999999987
No 246
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=47.00 E-value=6.3 Score=32.48 Aligned_cols=12 Identities=42% Similarity=0.695 Sum_probs=10.9
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||+.+
T Consensus 36 ~G~nGsGKSTLl 47 (220)
T cd03293 36 VGPSGCGKSTLL 47 (220)
T ss_pred ECCCCCCHHHHH
Confidence 499999999987
No 247
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=46.99 E-value=6.1 Score=31.62 Aligned_cols=13 Identities=38% Similarity=0.501 Sum_probs=11.6
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-+|++|+|||+.+
T Consensus 37 i~g~~g~GKT~~~ 49 (193)
T PF13481_consen 37 IAGPPGSGKTTLA 49 (193)
T ss_dssp EEECSTSSHHHHH
T ss_pred EEeCCCCCHHHHH
Confidence 3799999999988
No 248
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=46.81 E-value=6.5 Score=37.16 Aligned_cols=13 Identities=46% Similarity=0.762 Sum_probs=11.5
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-||+.|+|||+..
T Consensus 221 LyGPPGTGKT~LA 233 (512)
T TIGR03689 221 LYGPPGCGKTLIA 233 (512)
T ss_pred EECCCCCcHHHHH
Confidence 4999999999876
No 249
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=46.79 E-value=6.3 Score=31.52 Aligned_cols=13 Identities=31% Similarity=0.488 Sum_probs=11.2
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-+|+.|||||+..
T Consensus 4 i~G~pGsGKst~a 16 (194)
T cd01428 4 LLGPPGSGKGTQA 16 (194)
T ss_pred EECCCCCCHHHHH
Confidence 5799999999775
No 250
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=46.78 E-value=6.4 Score=33.98 Aligned_cols=13 Identities=46% Similarity=0.682 Sum_probs=11.6
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-.|++|+|||-.+
T Consensus 38 l~G~~GtGKT~li 50 (272)
T PF12775_consen 38 LVGPSGTGKTSLI 50 (272)
T ss_dssp EESSTTSSHHHHH
T ss_pred EECCCCCchhHHH
Confidence 3699999999988
No 251
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=46.75 E-value=6.4 Score=32.31 Aligned_cols=12 Identities=42% Similarity=0.739 Sum_probs=10.8
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||+.+
T Consensus 35 ~G~nGsGKSTLl 46 (216)
T TIGR00960 35 VGHSGAGKSTFL 46 (216)
T ss_pred ECCCCCCHHHHH
Confidence 499999999887
No 252
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=46.73 E-value=6.4 Score=32.23 Aligned_cols=12 Identities=50% Similarity=0.731 Sum_probs=10.8
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||+.+
T Consensus 34 ~G~nGsGKSTLl 45 (214)
T TIGR02673 34 TGPSGAGKTTLL 45 (214)
T ss_pred ECCCCCCHHHHH
Confidence 499999999987
No 253
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=46.71 E-value=6.9 Score=32.84 Aligned_cols=13 Identities=46% Similarity=0.646 Sum_probs=11.0
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
=|||.|.|||..-
T Consensus 55 f~GPPG~GKTTLA 67 (233)
T PF05496_consen 55 FYGPPGLGKTTLA 67 (233)
T ss_dssp EESSTTSSHHHHH
T ss_pred EECCCccchhHHH
Confidence 4999999998764
No 254
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=46.69 E-value=6.4 Score=31.50 Aligned_cols=12 Identities=33% Similarity=0.578 Sum_probs=11.1
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|++|||||+.+
T Consensus 9 ~G~sGsGKSTl~ 20 (176)
T PRK09825 9 MGVSGSGKSLIG 20 (176)
T ss_pred ECCCCCCHHHHH
Confidence 699999999987
No 255
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=46.67 E-value=6.4 Score=32.82 Aligned_cols=12 Identities=33% Similarity=0.512 Sum_probs=10.7
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
-|++|||||+.+
T Consensus 39 ~G~~GsGKTTl~ 50 (229)
T PRK09270 39 AGPPGAGKSTLA 50 (229)
T ss_pred ECCCCCCHHHHH
Confidence 389999999987
No 256
>PRK06762 hypothetical protein; Provisional
Probab=46.66 E-value=6.9 Score=30.56 Aligned_cols=12 Identities=42% Similarity=0.659 Sum_probs=10.4
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|..|||||+.-
T Consensus 8 ~G~~GsGKST~A 19 (166)
T PRK06762 8 RGNSGSGKTTIA 19 (166)
T ss_pred ECCCCCCHHHHH
Confidence 699999998865
No 257
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=46.58 E-value=6.8 Score=31.66 Aligned_cols=12 Identities=42% Similarity=0.750 Sum_probs=10.8
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|++|||||..|
T Consensus 42 VG~SGSGKSTLl 53 (228)
T COG4181 42 VGPSGSGKSTLL 53 (228)
T ss_pred EcCCCCcHHhHH
Confidence 499999999987
No 258
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=46.55 E-value=7.4 Score=35.85 Aligned_cols=14 Identities=43% Similarity=0.833 Sum_probs=12.2
Q ss_pred CcccCCccCccccc
Q 024439 1 MAYGQTGTGKTYTL 14 (267)
Q Consensus 1 ~ayG~tgSGKT~Tl 14 (267)
+-|||.|+|||.-+
T Consensus 239 LLYGPPGTGKSS~I 252 (457)
T KOG0743|consen 239 LLYGPPGTGKSSFI 252 (457)
T ss_pred eeeCCCCCCHHHHH
Confidence 35999999999877
No 259
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=46.54 E-value=6.7 Score=32.82 Aligned_cols=12 Identities=33% Similarity=0.703 Sum_probs=11.2
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||..|
T Consensus 29 ~GpNGsGKStll 40 (243)
T cd03272 29 VGRNGSGKSNFF 40 (243)
T ss_pred ECCCCCCHHHHH
Confidence 599999999998
No 260
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=46.43 E-value=6 Score=39.68 Aligned_cols=13 Identities=46% Similarity=0.718 Sum_probs=12.0
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-+|++|||||+.+
T Consensus 446 I~G~tGsGKS~l~ 458 (811)
T PRK13873 446 VVGPTGAGKSVLL 458 (811)
T ss_pred EECCCCCCHHHHH
Confidence 4799999999999
No 261
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=46.42 E-value=6.8 Score=30.53 Aligned_cols=12 Identities=42% Similarity=0.609 Sum_probs=10.8
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
+|+.|||||+..
T Consensus 6 ~G~~GSGKstia 17 (171)
T TIGR02173 6 SGPPGSGKTTVA 17 (171)
T ss_pred ECCCCCCHHHHH
Confidence 699999999876
No 262
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=46.35 E-value=6.5 Score=32.28 Aligned_cols=12 Identities=42% Similarity=0.750 Sum_probs=10.7
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||+.+
T Consensus 36 ~G~nGsGKSTLl 47 (218)
T cd03255 36 VGPSGSGKSTLL 47 (218)
T ss_pred EcCCCCCHHHHH
Confidence 599999999887
No 263
>CHL00195 ycf46 Ycf46; Provisional
Probab=46.16 E-value=6.9 Score=36.83 Aligned_cols=13 Identities=46% Similarity=0.618 Sum_probs=11.7
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-||+.|+|||++.
T Consensus 264 L~GPpGTGKTllA 276 (489)
T CHL00195 264 LVGIQGTGKSLTA 276 (489)
T ss_pred EECCCCCcHHHHH
Confidence 4899999999886
No 264
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=45.74 E-value=7.3 Score=31.63 Aligned_cols=11 Identities=45% Similarity=0.528 Sum_probs=10.2
Q ss_pred cCCccCccccc
Q 024439 4 GQTGTGKTYTL 14 (267)
Q Consensus 4 G~tgSGKT~Tl 14 (267)
|.+|||||+..
T Consensus 6 G~sgsGKTtla 16 (187)
T cd02024 6 GVTNSGKTTLA 16 (187)
T ss_pred CCCCCCHHHHH
Confidence 89999999987
No 265
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=45.71 E-value=6.2 Score=31.69 Aligned_cols=12 Identities=50% Similarity=0.769 Sum_probs=10.8
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||..+
T Consensus 31 ~G~nGsGKSTLl 42 (177)
T cd03222 31 VGPNGTGKTTAV 42 (177)
T ss_pred ECCCCChHHHHH
Confidence 599999999987
No 266
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=45.67 E-value=6.8 Score=32.27 Aligned_cols=12 Identities=33% Similarity=0.454 Sum_probs=10.9
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||..+
T Consensus 19 ~G~NGsGKSTLl 30 (213)
T PRK15177 19 LAAPGSGKTTLT 30 (213)
T ss_pred ECCCCCCHHHHH
Confidence 499999999987
No 267
>PRK06696 uridine kinase; Validated
Probab=45.65 E-value=7.4 Score=32.29 Aligned_cols=12 Identities=42% Similarity=0.374 Sum_probs=10.6
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
-|.+|||||+..
T Consensus 28 ~G~sgsGKSTlA 39 (223)
T PRK06696 28 DGITASGKTTFA 39 (223)
T ss_pred ECCCCCCHHHHH
Confidence 489999999977
No 268
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=45.57 E-value=7.6 Score=33.44 Aligned_cols=34 Identities=24% Similarity=0.341 Sum_probs=20.0
Q ss_pred CCeEEEeCCHHHHH--HHHHHHhhccccccCCCcCC
Q 024439 84 GATVVKLRDLDHLL--QLLQVGEVNRHAANTKLNTE 117 (267)
Q Consensus 84 ~l~~~~v~s~~e~~--~~l~~~~~~R~~~~~~~~~~ 117 (267)
.++.+..++--|++ .+++.|..-|.+..-..|..
T Consensus 310 ~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~ 345 (424)
T KOG0652|consen 310 RVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEE 345 (424)
T ss_pred ceEEEeecccccccCHHHhhcccccccccCCCCChH
Confidence 34445555555554 57777777777665554443
No 269
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=45.54 E-value=6.8 Score=32.56 Aligned_cols=12 Identities=33% Similarity=0.750 Sum_probs=10.8
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||+.+
T Consensus 37 ~G~nGsGKSTLl 48 (233)
T cd03258 37 IGRSGAGKSTLI 48 (233)
T ss_pred ECCCCCCHHHHH
Confidence 599999999887
No 270
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=45.51 E-value=7.3 Score=26.64 Aligned_cols=12 Identities=42% Similarity=0.545 Sum_probs=10.6
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
+|..|+|||++.
T Consensus 5 ~g~~G~Gktt~~ 16 (99)
T cd01983 5 TGKGGVGKTTLA 16 (99)
T ss_pred ECCCCCCHHHHH
Confidence 578899999998
No 271
>PRK07667 uridine kinase; Provisional
Probab=45.49 E-value=7.4 Score=31.54 Aligned_cols=12 Identities=33% Similarity=0.396 Sum_probs=10.7
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|.+|||||+..
T Consensus 23 ~G~~gsGKStla 34 (193)
T PRK07667 23 DGLSRSGKTTFV 34 (193)
T ss_pred ECCCCCCHHHHH
Confidence 399999999987
No 272
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=45.45 E-value=7.8 Score=30.72 Aligned_cols=13 Identities=46% Similarity=0.480 Sum_probs=11.3
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-+|++|+|||...
T Consensus 4 i~G~~G~GKT~l~ 16 (187)
T cd01124 4 LSGGPGTGKTTFA 16 (187)
T ss_pred EEcCCCCCHHHHH
Confidence 4899999999866
No 273
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=45.43 E-value=21 Score=29.38 Aligned_cols=15 Identities=20% Similarity=0.322 Sum_probs=11.5
Q ss_pred CCHHHHHHHHHHHhh
Q 024439 91 RDLDHLLQLLQVGEV 105 (267)
Q Consensus 91 ~s~~e~~~~l~~~~~ 105 (267)
+-++|+..+|+.|..
T Consensus 104 kR~qDVeeLL~aGId 118 (211)
T PF02702_consen 104 KRYQDVEELLDAGID 118 (211)
T ss_dssp BHHHHHHHHHHTT-E
T ss_pred ccHHhHHHHHHCCCe
Confidence 567999999998873
No 274
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=45.26 E-value=6.9 Score=31.75 Aligned_cols=12 Identities=42% Similarity=0.814 Sum_probs=10.8
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||+.+
T Consensus 30 ~G~nGsGKSTLl 41 (206)
T TIGR03608 30 IGESGSGKSTLL 41 (206)
T ss_pred ECCCCCCHHHHH
Confidence 499999999887
No 275
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=45.11 E-value=20 Score=34.87 Aligned_cols=12 Identities=58% Similarity=0.767 Sum_probs=11.0
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
-|..|+|||+|+
T Consensus 173 tGgpGTGKTt~v 184 (615)
T PRK10875 173 SGGPGTGKTTTV 184 (615)
T ss_pred EeCCCCCHHHHH
Confidence 489999999998
No 276
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=44.99 E-value=7 Score=32.18 Aligned_cols=12 Identities=50% Similarity=0.828 Sum_probs=10.9
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||+.+
T Consensus 32 ~G~nGsGKSTLl 43 (220)
T cd03265 32 LGPNGAGKTTTI 43 (220)
T ss_pred ECCCCCCHHHHH
Confidence 599999999887
No 277
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=44.85 E-value=8 Score=33.91 Aligned_cols=12 Identities=42% Similarity=0.772 Sum_probs=10.5
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+||||||-.-
T Consensus 10 ~GpTasGKS~LA 21 (300)
T PRK14729 10 FGPTAVGKSNIL 21 (300)
T ss_pred ECCCccCHHHHH
Confidence 599999999865
No 278
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=44.80 E-value=7.1 Score=32.09 Aligned_cols=12 Identities=58% Similarity=0.900 Sum_probs=10.8
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||+.+
T Consensus 34 ~G~nGsGKSTLl 45 (220)
T cd03263 34 LGHNGAGKTTTL 45 (220)
T ss_pred ECCCCCCHHHHH
Confidence 599999999887
No 279
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=44.70 E-value=7.1 Score=33.12 Aligned_cols=12 Identities=42% Similarity=0.758 Sum_probs=11.0
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|++|||||..|
T Consensus 40 iGgSGsGKStlL 51 (263)
T COG1127 40 LGGSGSGKSTLL 51 (263)
T ss_pred ECCCCcCHHHHH
Confidence 599999999987
No 280
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=44.66 E-value=18 Score=31.52 Aligned_cols=50 Identities=12% Similarity=0.193 Sum_probs=28.3
Q ss_pred CcccCCccCccccc---ccc----CCCCCCCcChHHHHHHHHHHhcccCCCeEEEEEEEE
Q 024439 1 MAYGQTGTGKTYTL---GRL----GKDDASERGIMVRALEDIISSMSVTSDSVEVSYLQL 53 (267)
Q Consensus 1 ~ayG~tgSGKT~Tl---~G~----~~~~~~~~Gli~r~~~~lf~~~~~~~~~v~~S~~EI 53 (267)
+|.|.||-|||..| |.. ...+...+++=.++... .+.+.+-++.+..++-
T Consensus 46 lCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~Ty---elqEsnvrlKLtiv~t 102 (406)
T KOG3859|consen 46 LCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTY---ELQESNVRLKLTIVDT 102 (406)
T ss_pred EEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchh---hhhhcCeeEEEEEEee
Confidence 57899999999987 222 22233345554444322 2233344666666654
No 281
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=44.64 E-value=7.2 Score=32.54 Aligned_cols=12 Identities=42% Similarity=0.736 Sum_probs=10.8
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|++|||||..+
T Consensus 33 ~G~nGsGKSTLl 44 (241)
T cd03256 33 IGPSGAGKSTLL 44 (241)
T ss_pred ECCCCCCHHHHH
Confidence 499999999886
No 282
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=44.62 E-value=7.2 Score=32.49 Aligned_cols=12 Identities=42% Similarity=0.761 Sum_probs=10.8
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||+.+
T Consensus 32 ~G~nGsGKSTLl 43 (235)
T cd03261 32 IGPSGSGKSTLL 43 (235)
T ss_pred ECCCCCCHHHHH
Confidence 599999999887
No 283
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=44.54 E-value=7.2 Score=29.09 Aligned_cols=13 Identities=31% Similarity=0.468 Sum_probs=11.5
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-+|.+|||||..+
T Consensus 6 ~~G~~~~GKstl~ 18 (161)
T TIGR00231 6 IVGDPNVGKSTLL 18 (161)
T ss_pred EECCCCCCHHHHH
Confidence 3799999999988
No 284
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=44.53 E-value=7.2 Score=34.03 Aligned_cols=12 Identities=50% Similarity=0.828 Sum_probs=11.0
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||+.+
T Consensus 25 ~G~NGaGKSTLl 36 (302)
T TIGR01188 25 LGPNGAGKTTTI 36 (302)
T ss_pred ECCCCCCHHHHH
Confidence 599999999997
No 285
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=44.45 E-value=7.2 Score=35.36 Aligned_cols=12 Identities=50% Similarity=0.789 Sum_probs=11.1
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|++|||||+.|
T Consensus 46 lGpsGsGKSTLL 57 (375)
T PRK09452 46 LGPSGCGKTTVL 57 (375)
T ss_pred ECCCCCcHHHHH
Confidence 699999999987
No 286
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=44.42 E-value=7.3 Score=31.88 Aligned_cols=12 Identities=50% Similarity=0.753 Sum_probs=10.5
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||..+
T Consensus 32 ~G~nGsGKSTLl 43 (213)
T cd03259 32 LGPSGCGKTTLL 43 (213)
T ss_pred ECCCCCCHHHHH
Confidence 499999999876
No 287
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=44.40 E-value=7 Score=35.49 Aligned_cols=14 Identities=36% Similarity=0.703 Sum_probs=12.5
Q ss_pred CcccCCccCccccc
Q 024439 1 MAYGQTGTGKTYTL 14 (267)
Q Consensus 1 ~ayG~tgSGKT~Tl 14 (267)
+++|..|||||+++
T Consensus 5 i~~GgrgSGKS~~~ 18 (396)
T TIGR01547 5 IAKGGRRSGKTFAI 18 (396)
T ss_pred EEeCCCCcccHHHH
Confidence 36899999999997
No 288
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=44.18 E-value=18 Score=31.76 Aligned_cols=61 Identities=18% Similarity=0.206 Sum_probs=34.2
Q ss_pred CcccCCccCccccccccCCCC-------------CCCcChHHHHHHHHHHhcccCCCe-EEEEEEEEecCceeec
Q 024439 1 MAYGQTGTGKTYTLGRLGKDD-------------ASERGIMVRALEDIISSMSVTSDS-VEVSYLQLYMESIQDL 61 (267)
Q Consensus 1 ~ayG~tgSGKT~Tl~G~~~~~-------------~~~~Gli~r~~~~lf~~~~~~~~~-v~~S~~EIy~e~v~DL 61 (267)
+-||..|+|||-.--...... ..-.|==|+.+++||+-..++..+ |.+-=++-..-+=||-
T Consensus 223 IlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds 297 (440)
T KOG0726|consen 223 ILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDS 297 (440)
T ss_pred EEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccC
Confidence 359999999996541100000 011234489999999988776554 3333333344444444
No 289
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=44.17 E-value=7.4 Score=31.81 Aligned_cols=12 Identities=42% Similarity=0.725 Sum_probs=10.7
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|++|||||+-+
T Consensus 33 ~G~nGsGKSTLl 44 (214)
T cd03292 33 VGPSGAGKSTLL 44 (214)
T ss_pred ECCCCCCHHHHH
Confidence 599999999876
No 290
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=44.16 E-value=7.5 Score=36.00 Aligned_cols=13 Identities=46% Similarity=0.578 Sum_probs=11.8
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-+|.+|+|||+|+
T Consensus 100 lvG~~GsGKTTta 112 (437)
T PRK00771 100 LVGLQGSGKTTTA 112 (437)
T ss_pred EECCCCCcHHHHH
Confidence 3799999999998
No 291
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=44.11 E-value=9.5 Score=37.30 Aligned_cols=57 Identities=21% Similarity=0.332 Sum_probs=30.7
Q ss_pred cccCCccCccccccccCCC--C-----CCCcChHHHHHHHHHHhcccCCCeEEEEEEEEecCce
Q 024439 2 AYGQTGTGKTYTLGRLGKD--D-----ASERGIMVRALEDIISSMSVTSDSVEVSYLQLYMESI 58 (267)
Q Consensus 2 ayG~tgSGKT~Tl~G~~~~--~-----~~~~Gli~r~~~~lf~~~~~~~~~v~~S~~EIy~e~v 58 (267)
-+|.+||||||+|-..-.. . ..+.-+..+..++|-....+..-...+||+..|+-+.
T Consensus 34 l~Gvtgs~kt~~~a~~~~~~~~p~Lvi~~n~~~A~ql~~el~~f~p~~~V~~f~sy~d~y~pe~ 97 (655)
T TIGR00631 34 LLGVTGSGKTFTMANVIAQVNRPTLVIAHNKTLAAQLYNEFKEFFPENAVEYFVSYYDYYQPEA 97 (655)
T ss_pred EECCCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeeecccCCccc
Confidence 3699999999998321000 0 0112222233333322333322457789999887764
No 292
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=44.03 E-value=7.5 Score=35.79 Aligned_cols=13 Identities=46% Similarity=0.726 Sum_probs=11.7
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
..|++|+|||+|+
T Consensus 228 lvGptGvGKTTta 240 (432)
T PRK12724 228 FVGPTGSGKTTSI 240 (432)
T ss_pred EECCCCCCHHHHH
Confidence 3599999999999
No 293
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=43.98 E-value=7.5 Score=32.35 Aligned_cols=12 Identities=42% Similarity=0.681 Sum_probs=10.9
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||+.+
T Consensus 32 ~G~nGsGKSTLl 43 (236)
T cd03219 32 IGPNGAGKTTLF 43 (236)
T ss_pred ECCCCCCHHHHH
Confidence 599999999887
No 294
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=43.96 E-value=7.5 Score=31.73 Aligned_cols=12 Identities=50% Similarity=0.828 Sum_probs=10.8
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||+.+
T Consensus 32 ~G~nGsGKSTLl 43 (210)
T cd03269 32 LGPNGAGKTTTI 43 (210)
T ss_pred ECCCCCCHHHHH
Confidence 499999999987
No 295
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=43.95 E-value=7.5 Score=32.03 Aligned_cols=13 Identities=38% Similarity=0.544 Sum_probs=11.3
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-.|.||||||.+.
T Consensus 5 llG~tGsGKSs~~ 17 (212)
T PF04548_consen 5 LLGKTGSGKSSLG 17 (212)
T ss_dssp EECSTTSSHHHHH
T ss_pred EECCCCCCHHHHH
Confidence 3699999999886
No 296
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=43.93 E-value=7.5 Score=32.10 Aligned_cols=12 Identities=33% Similarity=0.612 Sum_probs=11.0
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
-|..|||||+.+
T Consensus 4 ~G~pGsGKSt~i 15 (234)
T PF01443_consen 4 HGVPGSGKSTLI 15 (234)
T ss_pred EcCCCCCHHHHH
Confidence 589999999988
No 297
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=43.88 E-value=7.5 Score=32.37 Aligned_cols=12 Identities=42% Similarity=0.761 Sum_probs=10.8
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||+.+
T Consensus 41 ~G~nGsGKSTLl 52 (233)
T PRK11629 41 VGSSGSGKSTLL 52 (233)
T ss_pred ECCCCCCHHHHH
Confidence 499999999887
No 298
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=43.88 E-value=7.5 Score=31.81 Aligned_cols=12 Identities=42% Similarity=0.697 Sum_probs=10.8
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|++|||||..+
T Consensus 31 ~G~nGsGKSTLl 42 (213)
T cd03235 31 VGPNGAGKSTLL 42 (213)
T ss_pred ECCCCCCHHHHH
Confidence 599999999987
No 299
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=43.83 E-value=7.4 Score=29.74 Aligned_cols=13 Identities=38% Similarity=0.419 Sum_probs=11.4
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-+|+.|||||+..
T Consensus 4 l~G~~GsGKstla 16 (154)
T cd00464 4 LIGMMGAGKTTVG 16 (154)
T ss_pred EEcCCCCCHHHHH
Confidence 4799999999986
No 300
>PRK14974 cell division protein FtsY; Provisional
Probab=43.68 E-value=7.7 Score=34.60 Aligned_cols=12 Identities=58% Similarity=0.814 Sum_probs=11.3
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|++|+|||.|+
T Consensus 146 ~G~~GvGKTTti 157 (336)
T PRK14974 146 VGVNGTGKTTTI 157 (336)
T ss_pred EcCCCCCHHHHH
Confidence 599999999999
No 301
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=43.66 E-value=7.6 Score=30.89 Aligned_cols=12 Identities=42% Similarity=0.780 Sum_probs=10.6
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||..+
T Consensus 32 ~G~nGsGKSTLl 43 (178)
T cd03229 32 LGPSGSGKSTLL 43 (178)
T ss_pred ECCCCCCHHHHH
Confidence 489999999986
No 302
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=43.64 E-value=7.5 Score=34.94 Aligned_cols=12 Identities=42% Similarity=0.695 Sum_probs=11.1
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|++|||||..+
T Consensus 36 lG~sGsGKSTLL 47 (356)
T PRK11650 36 VGPSGCGKSTLL 47 (356)
T ss_pred ECCCCCcHHHHH
Confidence 599999999998
No 303
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=43.59 E-value=8 Score=29.76 Aligned_cols=12 Identities=33% Similarity=0.562 Sum_probs=10.8
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
+|+.||||+...
T Consensus 2 ~G~PgsGK~t~~ 13 (151)
T PF00406_consen 2 LGPPGSGKGTQA 13 (151)
T ss_dssp EESTTSSHHHHH
T ss_pred cCCCCCChHHHH
Confidence 699999999876
No 304
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=43.34 E-value=7.7 Score=31.66 Aligned_cols=12 Identities=42% Similarity=0.761 Sum_probs=10.6
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||..+
T Consensus 32 ~G~nGsGKSTLl 43 (213)
T cd03262 32 IGPSGSGKSTLL 43 (213)
T ss_pred ECCCCCCHHHHH
Confidence 599999999876
No 305
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=43.34 E-value=8.4 Score=32.08 Aligned_cols=11 Identities=45% Similarity=0.740 Sum_probs=8.6
Q ss_pred cCCccCccccc
Q 024439 4 GQTGTGKTYTL 14 (267)
Q Consensus 4 G~tgSGKT~Tl 14 (267)
|++|||||.-.
T Consensus 15 G~SgSGKTTva 25 (218)
T COG0572 15 GGSGSGKTTVA 25 (218)
T ss_pred CCCCCCHHHHH
Confidence 89999995543
No 306
>PRK04195 replication factor C large subunit; Provisional
Probab=43.32 E-value=7.7 Score=36.36 Aligned_cols=13 Identities=46% Similarity=0.708 Sum_probs=12.0
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-||+.|+|||+..
T Consensus 44 L~GppG~GKTtla 56 (482)
T PRK04195 44 LYGPPGVGKTSLA 56 (482)
T ss_pred EECCCCCCHHHHH
Confidence 4899999999987
No 307
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=43.19 E-value=7.8 Score=31.86 Aligned_cols=12 Identities=42% Similarity=0.767 Sum_probs=11.0
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||..+
T Consensus 36 ~G~nGsGKSTLl 47 (220)
T cd03245 36 IGRVGSGKSTLL 47 (220)
T ss_pred ECCCCCCHHHHH
Confidence 599999999988
No 308
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=43.05 E-value=7.8 Score=35.14 Aligned_cols=12 Identities=42% Similarity=0.725 Sum_probs=11.1
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|++|||||+.|
T Consensus 51 lGpsGsGKSTLL 62 (377)
T PRK11607 51 LGASGCGKSTLL 62 (377)
T ss_pred ECCCCCcHHHHH
Confidence 699999999997
No 309
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=43.04 E-value=7.8 Score=34.92 Aligned_cols=12 Identities=50% Similarity=0.780 Sum_probs=11.1
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|++|||||+.|
T Consensus 37 lGpsGsGKSTLL 48 (362)
T TIGR03258 37 IGKSGCGKTTLL 48 (362)
T ss_pred ECCCCCCHHHHH
Confidence 699999999987
No 310
>PRK14532 adenylate kinase; Provisional
Probab=42.88 E-value=7.9 Score=30.96 Aligned_cols=13 Identities=23% Similarity=0.440 Sum_probs=11.2
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-+|+.|||||+.-
T Consensus 5 ~~G~pGsGKsT~a 17 (188)
T PRK14532 5 LFGPPAAGKGTQA 17 (188)
T ss_pred EECCCCCCHHHHH
Confidence 4799999999875
No 311
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=42.86 E-value=7.3 Score=39.34 Aligned_cols=13 Identities=46% Similarity=0.861 Sum_probs=12.0
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
..|+||||||+.+
T Consensus 493 I~G~tGsGKS~l~ 505 (852)
T PRK13891 493 MFGPTGAGKSTHL 505 (852)
T ss_pred EECCCCCCHHHHH
Confidence 4799999999999
No 312
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=42.83 E-value=7.9 Score=28.03 Aligned_cols=13 Identities=38% Similarity=0.708 Sum_probs=11.4
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-.|+.|+|||..+
T Consensus 4 V~G~~g~GKTsLi 16 (119)
T PF08477_consen 4 VLGDSGVGKTSLI 16 (119)
T ss_dssp EECSTTSSHHHHH
T ss_pred EECcCCCCHHHHH
Confidence 3699999999988
No 313
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=42.71 E-value=7.4 Score=31.18 Aligned_cols=12 Identities=50% Similarity=0.537 Sum_probs=10.7
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
-|.+|||||..+
T Consensus 12 vG~sgsGKTTLi 23 (173)
T PRK10751 12 AAWSGTGKTTLL 23 (173)
T ss_pred ECCCCChHHHHH
Confidence 389999999988
No 314
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=42.62 E-value=8.1 Score=32.05 Aligned_cols=12 Identities=50% Similarity=0.805 Sum_probs=10.8
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||+.+
T Consensus 32 ~G~nGsGKSTLl 43 (232)
T cd03218 32 LGPNGAGKTTTF 43 (232)
T ss_pred ECCCCCCHHHHH
Confidence 599999999987
No 315
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=42.57 E-value=8.9 Score=28.93 Aligned_cols=12 Identities=33% Similarity=0.570 Sum_probs=10.6
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||..-
T Consensus 5 ~G~~GsGKst~a 16 (147)
T cd02020 5 DGPAGSGKSTVA 16 (147)
T ss_pred ECCCCCCHHHHH
Confidence 699999999975
No 316
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=42.57 E-value=8.1 Score=31.96 Aligned_cols=12 Identities=42% Similarity=0.706 Sum_probs=10.8
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|++|||||+.+
T Consensus 32 ~G~nGsGKSTLl 43 (227)
T cd03260 32 IGPSGCGKSTLL 43 (227)
T ss_pred ECCCCCCHHHHH
Confidence 499999999987
No 317
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=42.56 E-value=7.8 Score=28.17 Aligned_cols=12 Identities=25% Similarity=0.523 Sum_probs=10.1
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|.+|+|||.-+
T Consensus 5 iG~~~~GKSTli 16 (116)
T PF01926_consen 5 IGRPNVGKSTLI 16 (116)
T ss_dssp EESTTSSHHHHH
T ss_pred ECCCCCCHHHHH
Confidence 588899998877
No 318
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=42.56 E-value=8.1 Score=33.86 Aligned_cols=12 Identities=58% Similarity=0.861 Sum_probs=11.0
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||+++
T Consensus 39 lGpNGaGKSTLl 50 (306)
T PRK13537 39 LGPNGAGKTTTL 50 (306)
T ss_pred ECCCCCCHHHHH
Confidence 599999999997
No 319
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=42.50 E-value=8.1 Score=31.77 Aligned_cols=12 Identities=50% Similarity=0.803 Sum_probs=10.8
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||..+
T Consensus 32 ~G~nGsGKSTLl 43 (222)
T cd03224 32 LGRNGAGKTTLL 43 (222)
T ss_pred ECCCCCCHHHHH
Confidence 499999999887
No 320
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=42.47 E-value=8.1 Score=30.77 Aligned_cols=12 Identities=42% Similarity=0.728 Sum_probs=10.5
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|++|||||..+
T Consensus 31 ~G~nGsGKStLl 42 (180)
T cd03214 31 LGPNGAGKSTLL 42 (180)
T ss_pred ECCCCCCHHHHH
Confidence 499999999876
No 321
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=42.39 E-value=8.4 Score=33.89 Aligned_cols=12 Identities=33% Similarity=0.681 Sum_probs=10.7
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
-|.+|||||.|.
T Consensus 37 VGESGsGKS~~~ 48 (316)
T COG0444 37 VGESGSGKSVLA 48 (316)
T ss_pred EcCCCCCHHHHH
Confidence 389999999987
No 322
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=42.35 E-value=8.8 Score=39.84 Aligned_cols=12 Identities=33% Similarity=0.753 Sum_probs=10.9
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
-|++|||||+.+
T Consensus 1022 VG~SGsGKSTvI 1033 (1228)
T KOG0055|consen 1022 VGPSGSGKSTVI 1033 (1228)
T ss_pred ECCCCCCHHHHH
Confidence 399999999999
No 323
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=42.30 E-value=9 Score=31.47 Aligned_cols=12 Identities=42% Similarity=0.756 Sum_probs=11.1
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
+|+.|||||-.+
T Consensus 30 ~G~NGsGKS~il 41 (220)
T PF02463_consen 30 VGPNGSGKSNIL 41 (220)
T ss_dssp EESTTSSHHHHH
T ss_pred EcCCCCCHHHHH
Confidence 799999999887
No 324
>PRK03839 putative kinase; Provisional
Probab=42.30 E-value=8.8 Score=30.47 Aligned_cols=12 Identities=42% Similarity=0.548 Sum_probs=10.5
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|..|||||+.-
T Consensus 6 ~G~pGsGKsT~~ 17 (180)
T PRK03839 6 TGTPGVGKTTVS 17 (180)
T ss_pred ECCCCCCHHHHH
Confidence 699999999865
No 325
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=42.24 E-value=9.1 Score=32.44 Aligned_cols=12 Identities=33% Similarity=0.659 Sum_probs=10.5
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|++|||||+..
T Consensus 39 vGeSGsGKSTL~ 50 (252)
T COG1124 39 VGESGSGKSTLA 50 (252)
T ss_pred EcCCCCCHHHHH
Confidence 489999999875
No 326
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=42.24 E-value=8.3 Score=31.45 Aligned_cols=14 Identities=36% Similarity=0.610 Sum_probs=11.8
Q ss_pred ccCCccCccccccc
Q 024439 3 YGQTGTGKTYTLGR 16 (267)
Q Consensus 3 yG~tgSGKT~Tl~G 16 (267)
+|+.|+|||..|.+
T Consensus 27 ~G~NGsGKStll~a 40 (198)
T cd03276 27 VGNNGSGKSAILTA 40 (198)
T ss_pred ECCCCCcHHHHHHH
Confidence 79999999988733
No 327
>PRK10876 recB exonuclease V subunit beta; Provisional
Probab=42.00 E-value=8.7 Score=40.27 Aligned_cols=10 Identities=60% Similarity=1.085 Sum_probs=8.5
Q ss_pred CCccCccccc
Q 024439 5 QTGTGKTYTL 14 (267)
Q Consensus 5 ~tgSGKT~Tl 14 (267)
..||||||||
T Consensus 25 SAGTGKTyTI 34 (1181)
T PRK10876 25 SAGTGKTFTI 34 (1181)
T ss_pred CCCCcHHHHH
Confidence 4689999998
No 328
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=41.98 E-value=8.4 Score=32.21 Aligned_cols=12 Identities=50% Similarity=0.808 Sum_probs=10.8
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||..+
T Consensus 34 ~G~nGsGKSTLl 45 (239)
T cd03296 34 LGPSGSGKTTLL 45 (239)
T ss_pred ECCCCCCHHHHH
Confidence 599999999887
No 329
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=41.98 E-value=8.5 Score=38.10 Aligned_cols=13 Identities=46% Similarity=0.708 Sum_probs=11.8
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
=||+.|+|||++.
T Consensus 57 L~GPpGtGKTTLA 69 (725)
T PRK13341 57 LYGPPGVGKTTLA 69 (725)
T ss_pred EECCCCCCHHHHH
Confidence 3899999999987
No 330
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=41.94 E-value=10 Score=35.25 Aligned_cols=33 Identities=30% Similarity=0.242 Sum_probs=20.2
Q ss_pred EeCCHHHHHHHHHHHhhccccccCCCcCCCCCc
Q 024439 89 KLRDLDHLLQLLQVGEVNRHAANTKLNTESSRS 121 (267)
Q Consensus 89 ~v~s~~e~~~~l~~~~~~R~~~~~~~~~~ssrs 121 (267)
.+-++.|+.++|+..-.++.........-|+-|
T Consensus 143 lLlDLkDLra~l~~v~e~~~e~~~~yG~is~aS 175 (502)
T PF05872_consen 143 LLLDLKDLRAMLQYVSENAKELSAEYGNISSAS 175 (502)
T ss_pred ccccHHHHHHHHHHHHhhHHHHHHHcCCccHHH
Confidence 345777888888777666655555544444443
No 331
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=41.90 E-value=8.4 Score=29.57 Aligned_cols=12 Identities=42% Similarity=0.744 Sum_probs=10.7
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
-|+.|||||+.+
T Consensus 32 ~G~nGsGKStLl 43 (144)
T cd03221 32 VGRNGAGKSTLL 43 (144)
T ss_pred ECCCCCCHHHHH
Confidence 489999999887
No 332
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=41.87 E-value=11 Score=31.22 Aligned_cols=12 Identities=50% Similarity=0.805 Sum_probs=11.0
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.||.|+|||+|+
T Consensus 36 LGPNGAGKTT~F 47 (243)
T COG1137 36 LGPNGAGKTTTF 47 (243)
T ss_pred ECCCCCCceeEE
Confidence 599999999997
No 333
>PRK13342 recombination factor protein RarA; Reviewed
Probab=41.85 E-value=8.4 Score=35.30 Aligned_cols=12 Identities=50% Similarity=0.767 Sum_probs=11.3
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
||+.|+|||+..
T Consensus 42 ~GppGtGKTtLA 53 (413)
T PRK13342 42 WGPPGTGKTTLA 53 (413)
T ss_pred ECCCCCCHHHHH
Confidence 899999999987
No 334
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=41.84 E-value=9.2 Score=31.71 Aligned_cols=12 Identities=42% Similarity=0.753 Sum_probs=11.2
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
+|++|||||.-+
T Consensus 25 ~G~~GsGKT~l~ 36 (235)
T cd01123 25 FGEFGSGKTQLC 36 (235)
T ss_pred ECCCCCCHHHHH
Confidence 799999999987
No 335
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=41.81 E-value=8.5 Score=29.16 Aligned_cols=12 Identities=33% Similarity=0.545 Sum_probs=10.9
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|.+|+|||..+
T Consensus 9 ~G~~g~GKttl~ 20 (168)
T cd04163 9 VGRPNVGKSTLL 20 (168)
T ss_pred ECCCCCCHHHHH
Confidence 599999999987
No 336
>PLN02796 D-glycerate 3-kinase
Probab=41.76 E-value=8.3 Score=34.49 Aligned_cols=11 Identities=36% Similarity=0.525 Sum_probs=10.4
Q ss_pred cCCccCccccc
Q 024439 4 GQTGTGKTYTL 14 (267)
Q Consensus 4 G~tgSGKT~Tl 14 (267)
|++|||||+.+
T Consensus 107 G~sGSGKSTLa 117 (347)
T PLN02796 107 APQGCGKTTLV 117 (347)
T ss_pred CCCCCcHHHHH
Confidence 89999999988
No 337
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=41.72 E-value=8.5 Score=31.44 Aligned_cols=12 Identities=50% Similarity=0.728 Sum_probs=10.8
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||+.+
T Consensus 34 ~G~nGsGKSTLl 45 (207)
T PRK13539 34 TGPNGSGKTTLL 45 (207)
T ss_pred ECCCCCCHHHHH
Confidence 499999999887
No 338
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=41.66 E-value=8.5 Score=31.65 Aligned_cols=12 Identities=42% Similarity=0.761 Sum_probs=10.9
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||+.+
T Consensus 37 ~G~nGsGKSTLl 48 (221)
T TIGR02211 37 VGSSGSGKSTLL 48 (221)
T ss_pred ECCCCCCHHHHH
Confidence 599999999987
No 339
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=41.63 E-value=9.2 Score=30.30 Aligned_cols=13 Identities=23% Similarity=0.337 Sum_probs=11.1
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
--|++|||||+..
T Consensus 7 l~G~~gsGKst~a 19 (175)
T cd00227 7 LNGGSSAGKSSIA 19 (175)
T ss_pred EECCCCCCHHHHH
Confidence 3599999999876
No 340
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=41.60 E-value=8.5 Score=31.32 Aligned_cols=12 Identities=50% Similarity=0.681 Sum_probs=10.7
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||+.+
T Consensus 33 ~G~nGsGKSTLl 44 (204)
T PRK13538 33 EGPNGAGKTSLL 44 (204)
T ss_pred ECCCCCCHHHHH
Confidence 499999999887
No 341
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=41.50 E-value=8.7 Score=32.94 Aligned_cols=12 Identities=42% Similarity=0.606 Sum_probs=11.3
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
+|++|||||..+
T Consensus 27 ~G~NGsGKS~ll 38 (270)
T cd03242 27 VGENAQGKTNLL 38 (270)
T ss_pred ECCCCCCHHHHH
Confidence 799999999987
No 342
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=41.49 E-value=9.3 Score=29.54 Aligned_cols=13 Identities=31% Similarity=0.491 Sum_probs=10.8
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-.|.+|||||+..
T Consensus 4 i~G~~GsGKSTla 16 (149)
T cd02027 4 LTGLSGSGKSTIA 16 (149)
T ss_pred EEcCCCCCHHHHH
Confidence 3699999998866
No 343
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=41.48 E-value=8.6 Score=33.57 Aligned_cols=12 Identities=33% Similarity=0.603 Sum_probs=10.9
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||+.|
T Consensus 36 ~G~NGaGKSTLl 47 (303)
T TIGR01288 36 LGPNGAGKSTIA 47 (303)
T ss_pred ECCCCCCHHHHH
Confidence 599999999987
No 344
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=41.41 E-value=8.6 Score=32.13 Aligned_cols=12 Identities=42% Similarity=0.736 Sum_probs=10.7
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||..+
T Consensus 34 ~G~nGsGKSTLl 45 (243)
T TIGR02315 34 IGPSGAGKSTLL 45 (243)
T ss_pred ECCCCCCHHHHH
Confidence 499999999887
No 345
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=41.40 E-value=10 Score=31.45 Aligned_cols=12 Identities=50% Similarity=0.808 Sum_probs=11.0
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|+|||+++
T Consensus 34 LG~NGAGKTT~L 45 (245)
T COG4555 34 LGENGAGKTTLL 45 (245)
T ss_pred EcCCCCCchhHH
Confidence 699999999997
No 346
>PRK04040 adenylate kinase; Provisional
Probab=41.36 E-value=9.3 Score=30.94 Aligned_cols=13 Identities=46% Similarity=0.626 Sum_probs=11.7
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-+|..|||||+.+
T Consensus 7 v~G~pG~GKtt~~ 19 (188)
T PRK04040 7 VTGVPGVGKTTVL 19 (188)
T ss_pred EEeCCCCCHHHHH
Confidence 4799999999988
No 347
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=41.33 E-value=8.6 Score=37.08 Aligned_cols=12 Identities=58% Similarity=0.767 Sum_probs=11.0
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|..|||||||+
T Consensus 166 tGgpGTGKTt~v 177 (586)
T TIGR01447 166 TGGPGTGKTTTV 177 (586)
T ss_pred EcCCCCCHHHHH
Confidence 599999999997
No 348
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=41.26 E-value=9.6 Score=36.19 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=27.5
Q ss_pred CcccCCccCcccccccc--CCCCCCCcChHHHHHHHHHHhccc
Q 024439 1 MAYGQTGTGKTYTLGRL--GKDDASERGIMVRALEDIISSMSV 41 (267)
Q Consensus 1 ~ayG~tgSGKT~Tl~G~--~~~~~~~~Gli~r~~~~lf~~~~~ 41 (267)
|..|||.|||||--.-. ....+--.|-+.....++|.....
T Consensus 195 ~H~GPTNSGKTy~ALqrl~~aksGvycGPLrLLA~EV~~r~na 237 (700)
T KOG0953|consen 195 MHVGPTNSGKTYRALQRLKSAKSGVYCGPLRLLAHEVYDRLNA 237 (700)
T ss_pred EEeCCCCCchhHHHHHHHhhhccceecchHHHHHHHHHHHhhh
Confidence 35699999999986110 112333457778888899987643
No 349
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=41.15 E-value=8.8 Score=32.02 Aligned_cols=12 Identities=33% Similarity=0.672 Sum_probs=10.8
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
-|++|||||+.+
T Consensus 33 ~G~nGsGKSTLl 44 (236)
T TIGR03864 33 LGPNGAGKSTLF 44 (236)
T ss_pred ECCCCCCHHHHH
Confidence 499999999987
No 350
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=41.14 E-value=8.7 Score=34.47 Aligned_cols=12 Identities=50% Similarity=0.789 Sum_probs=11.1
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|++|||||+.|
T Consensus 38 lGpsGsGKSTLL 49 (351)
T PRK11432 38 LGPSGCGKTTVL 49 (351)
T ss_pred ECCCCCcHHHHH
Confidence 599999999998
No 351
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=41.13 E-value=8.8 Score=32.37 Aligned_cols=12 Identities=42% Similarity=0.681 Sum_probs=10.8
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|++|||||+.+
T Consensus 38 ~G~nGsGKSTLl 49 (253)
T PRK14242 38 IGPSGCGKSTFL 49 (253)
T ss_pred ECCCCCCHHHHH
Confidence 499999999887
No 352
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=41.07 E-value=8.8 Score=31.35 Aligned_cols=12 Identities=58% Similarity=0.858 Sum_probs=10.8
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||..+
T Consensus 32 ~G~nGsGKSTLl 43 (213)
T cd03301 32 LGPSGCGKTTTL 43 (213)
T ss_pred ECCCCCCHHHHH
Confidence 499999999987
No 353
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=41.04 E-value=8.8 Score=31.44 Aligned_cols=12 Identities=42% Similarity=0.897 Sum_probs=10.7
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||..+
T Consensus 29 ~G~nGsGKSTLl 40 (214)
T cd03297 29 FGASGAGKSTLL 40 (214)
T ss_pred ECCCCCCHHHHH
Confidence 599999999876
No 354
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=40.88 E-value=8.9 Score=31.64 Aligned_cols=12 Identities=33% Similarity=0.659 Sum_probs=10.7
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||+.+
T Consensus 37 ~G~nGsGKSTLl 48 (228)
T cd03257 37 VGESGSGKSTLA 48 (228)
T ss_pred ECCCCCCHHHHH
Confidence 599999999887
No 355
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=40.83 E-value=9 Score=30.15 Aligned_cols=12 Identities=50% Similarity=0.617 Sum_probs=11.1
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|+|||.+.
T Consensus 6 ~G~~G~GKTt~~ 17 (173)
T cd03115 6 VGLQGVGKTTTA 17 (173)
T ss_pred ECCCCCCHHHHH
Confidence 599999999998
No 356
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=40.82 E-value=9.1 Score=31.26 Aligned_cols=12 Identities=42% Similarity=0.767 Sum_probs=0.0
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
+|+.|||||..+
T Consensus 5 iG~N~sGKS~il 16 (303)
T PF13304_consen 5 IGPNGSGKSNIL 16 (303)
T ss_dssp ------------
T ss_pred cccccccccccc
Confidence 799999999998
No 357
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=40.80 E-value=8.2 Score=38.41 Aligned_cols=13 Identities=54% Similarity=0.882 Sum_probs=11.8
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-.|++|||||+++
T Consensus 439 I~G~tGsGKS~~~ 451 (785)
T TIGR00929 439 IFGPTGSGKTTLL 451 (785)
T ss_pred EECCCCCCHHHHH
Confidence 4799999999998
No 358
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=40.75 E-value=9 Score=31.75 Aligned_cols=12 Identities=50% Similarity=0.786 Sum_probs=10.7
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||..+
T Consensus 32 ~G~nGsGKSTLl 43 (230)
T TIGR03410 32 LGRNGVGKTTLL 43 (230)
T ss_pred ECCCCCCHHHHH
Confidence 599999999887
No 359
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=40.60 E-value=9 Score=30.28 Aligned_cols=12 Identities=33% Similarity=0.617 Sum_probs=10.7
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||..+
T Consensus 34 ~G~nGsGKStLl 45 (173)
T cd03246 34 IGPSGSGKSTLA 45 (173)
T ss_pred ECCCCCCHHHHH
Confidence 599999999987
No 360
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=40.49 E-value=9.4 Score=30.17 Aligned_cols=12 Identities=42% Similarity=0.720 Sum_probs=10.8
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
+||+|+|||+.+
T Consensus 34 MGPSGcGKSTLl 45 (213)
T COG4136 34 MGPSGCGKSTLL 45 (213)
T ss_pred ECCCCccHHHHH
Confidence 699999999876
No 361
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=40.26 E-value=9.2 Score=29.98 Aligned_cols=12 Identities=33% Similarity=0.747 Sum_probs=10.9
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||..+
T Consensus 32 ~G~nGsGKSTLl 43 (163)
T cd03216 32 LGENGAGKSTLM 43 (163)
T ss_pred ECCCCCCHHHHH
Confidence 599999999987
No 362
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=40.19 E-value=9.3 Score=31.63 Aligned_cols=12 Identities=42% Similarity=0.814 Sum_probs=10.7
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||+.+
T Consensus 42 ~G~nGsGKSTLl 53 (228)
T PRK10584 42 IGESGSGKSTLL 53 (228)
T ss_pred ECCCCCCHHHHH
Confidence 489999999887
No 363
>PRK14527 adenylate kinase; Provisional
Probab=40.05 E-value=9.3 Score=30.77 Aligned_cols=13 Identities=31% Similarity=0.437 Sum_probs=11.1
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-+|+.|||||+..
T Consensus 11 i~G~pGsGKsT~a 23 (191)
T PRK14527 11 FLGPPGAGKGTQA 23 (191)
T ss_pred EECCCCCCHHHHH
Confidence 4799999999865
No 364
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD. The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM).
Probab=40.05 E-value=8.6 Score=36.90 Aligned_cols=14 Identities=36% Similarity=0.729 Sum_probs=11.8
Q ss_pred CcccCCccCccccc
Q 024439 1 MAYGQTGTGKTYTL 14 (267)
Q Consensus 1 ~ayG~tgSGKT~Tl 14 (267)
+.+|++|||||..+
T Consensus 180 li~G~tGsGKs~~i 193 (566)
T TIGR02759 180 LIHGTTGSGKSVAI 193 (566)
T ss_pred EEEcCCCCCHHHHH
Confidence 35899999999766
No 365
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=40.00 E-value=9.4 Score=34.28 Aligned_cols=12 Identities=50% Similarity=0.808 Sum_probs=11.0
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|++|||||+.+
T Consensus 34 lGpsGsGKSTLL 45 (353)
T PRK10851 34 LGPSGSGKTTLL 45 (353)
T ss_pred ECCCCCCHHHHH
Confidence 599999999987
No 366
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=39.98 E-value=9.2 Score=31.82 Aligned_cols=12 Identities=33% Similarity=0.548 Sum_probs=11.1
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|++|||||..+
T Consensus 27 ~G~sGsGKSTL~ 38 (226)
T cd03270 27 TGVSGSGKSSLA 38 (226)
T ss_pred EcCCCCCHHHHH
Confidence 599999999997
No 367
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=39.94 E-value=9.6 Score=32.15 Aligned_cols=12 Identities=33% Similarity=0.714 Sum_probs=11.1
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
+|+.|||||..+
T Consensus 28 ~G~NGsGKStll 39 (247)
T cd03275 28 IGPNGSGKSNLM 39 (247)
T ss_pred ECCCCCCHHHHH
Confidence 699999999987
No 368
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=39.75 E-value=9.5 Score=31.05 Aligned_cols=12 Identities=50% Similarity=0.828 Sum_probs=10.8
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||+.+
T Consensus 32 ~G~nGsGKSTLl 43 (208)
T cd03268 32 LGPNGAGKTTTM 43 (208)
T ss_pred ECCCCCCHHHHH
Confidence 499999999887
No 369
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=39.71 E-value=9.5 Score=30.14 Aligned_cols=12 Identities=42% Similarity=0.722 Sum_probs=10.7
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||.-+
T Consensus 32 ~G~nGsGKStLl 43 (173)
T cd03230 32 LGPNGAGKTTLI 43 (173)
T ss_pred ECCCCCCHHHHH
Confidence 599999999987
No 370
>PRK13721 conjugal transfer ATP-binding protein TraC; Provisional
Probab=39.70 E-value=8.8 Score=38.71 Aligned_cols=13 Identities=38% Similarity=0.634 Sum_probs=11.9
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-.|.+|||||+++
T Consensus 454 I~G~sGsGKS~l~ 466 (844)
T PRK13721 454 VCGTSGAGKTGLI 466 (844)
T ss_pred EEcCCCCCHHHHH
Confidence 4799999999998
No 371
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=39.68 E-value=9.7 Score=31.79 Aligned_cols=12 Identities=33% Similarity=0.578 Sum_probs=10.8
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||..+
T Consensus 32 ~G~nGsGKSTLl 43 (243)
T TIGR01978 32 MGPNGSGKSTLS 43 (243)
T ss_pred ECCCCCCHHHHH
Confidence 599999999887
No 372
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=39.66 E-value=9.5 Score=29.99 Aligned_cols=12 Identities=42% Similarity=0.700 Sum_probs=10.8
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||..+
T Consensus 33 ~G~nGsGKSTLl 44 (166)
T cd03223 33 TGPSGTGKSSLF 44 (166)
T ss_pred ECCCCCCHHHHH
Confidence 499999999987
No 373
>PRK13853 type IV secretion system protein VirB4; Provisional
Probab=39.62 E-value=8.8 Score=38.42 Aligned_cols=13 Identities=38% Similarity=0.728 Sum_probs=11.9
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-+|++|||||+.+
T Consensus 431 I~G~tGsGKS~l~ 443 (789)
T PRK13853 431 IFGPIGRGKTTLM 443 (789)
T ss_pred EECCCCCCHHHHH
Confidence 4799999999998
No 374
>PRK14530 adenylate kinase; Provisional
Probab=39.62 E-value=10 Score=31.17 Aligned_cols=13 Identities=31% Similarity=0.442 Sum_probs=11.1
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-.|++|||||+..
T Consensus 8 i~G~pGsGKsT~~ 20 (215)
T PRK14530 8 LLGAPGAGKGTQS 20 (215)
T ss_pred EECCCCCCHHHHH
Confidence 3699999999876
No 375
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=39.61 E-value=9.5 Score=31.17 Aligned_cols=12 Identities=42% Similarity=0.664 Sum_probs=10.9
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||..+
T Consensus 7 ~G~~GsGKTTll 18 (199)
T TIGR00101 7 AGPVGSGKTALI 18 (199)
T ss_pred ECCCCCCHHHHH
Confidence 489999999988
No 376
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=39.48 E-value=9.9 Score=31.05 Aligned_cols=12 Identities=42% Similarity=0.756 Sum_probs=10.8
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|++|||||+-+
T Consensus 31 ~GpSGaGKSTLL 42 (231)
T COG3840 31 LGPSGAGKSTLL 42 (231)
T ss_pred ECCCCccHHHHH
Confidence 599999999887
No 377
>COG4240 Predicted kinase [General function prediction only]
Probab=39.45 E-value=11 Score=31.77 Aligned_cols=12 Identities=33% Similarity=0.518 Sum_probs=10.7
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||++-
T Consensus 56 sGpQGSGKStls 67 (300)
T COG4240 56 SGPQGSGKSTLS 67 (300)
T ss_pred ecCCCCchhhHH
Confidence 599999999886
No 378
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=39.43 E-value=9.7 Score=32.34 Aligned_cols=12 Identities=50% Similarity=0.753 Sum_probs=10.7
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|++|||||+.+
T Consensus 33 ~G~nGsGKSTLl 44 (255)
T PRK11248 33 LGPSGCGKTTLL 44 (255)
T ss_pred ECCCCCCHHHHH
Confidence 599999999877
No 379
>PRK05541 adenylylsulfate kinase; Provisional
Probab=39.42 E-value=10 Score=29.93 Aligned_cols=12 Identities=42% Similarity=0.567 Sum_probs=10.6
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|..|||||+..
T Consensus 13 ~G~~GsGKst~a 24 (176)
T PRK05541 13 TGLAGSGKTTIA 24 (176)
T ss_pred EcCCCCCHHHHH
Confidence 599999998877
No 380
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=39.37 E-value=9.7 Score=31.08 Aligned_cols=12 Identities=42% Similarity=0.750 Sum_probs=10.9
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||+.+
T Consensus 30 ~G~nGsGKSTLl 41 (211)
T cd03298 30 VGPSGSGKSTLL 41 (211)
T ss_pred ECCCCCCHHHHH
Confidence 599999999987
No 381
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=39.37 E-value=9.7 Score=32.94 Aligned_cols=12 Identities=50% Similarity=0.825 Sum_probs=11.0
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|++|||||..+
T Consensus 39 ~G~nGsGKSTLl 50 (286)
T PRK13646 39 VGQTGSGKSTLI 50 (286)
T ss_pred ECCCCCCHHHHH
Confidence 599999999997
No 382
>KOG2878 consensus Predicted kinase [General function prediction only]
Probab=39.26 E-value=13 Score=30.81 Aligned_cols=12 Identities=33% Similarity=0.534 Sum_probs=10.9
Q ss_pred cCCccCcccccc
Q 024439 4 GQTGTGKTYTLG 15 (267)
Q Consensus 4 G~tgSGKT~Tl~ 15 (267)
||.|||||++.+
T Consensus 38 gPQGsGKstl~~ 49 (282)
T KOG2878|consen 38 GPQGSGKSTLVF 49 (282)
T ss_pred CCCCCCceeehh
Confidence 899999999984
No 383
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=39.26 E-value=9.8 Score=31.23 Aligned_cols=12 Identities=42% Similarity=0.703 Sum_probs=10.8
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
-|++|+|||.-|
T Consensus 34 ~GpSGAGKSTll 45 (223)
T COG2884 34 TGPSGAGKSTLL 45 (223)
T ss_pred ECCCCCCHHHHH
Confidence 499999999887
No 384
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=39.21 E-value=9.8 Score=30.76 Aligned_cols=12 Identities=50% Similarity=0.670 Sum_probs=10.6
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||..+
T Consensus 32 ~G~nGsGKSTLl 43 (198)
T TIGR01189 32 TGPNGIGKTTLL 43 (198)
T ss_pred ECCCCCCHHHHH
Confidence 499999999877
No 385
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=39.21 E-value=9.9 Score=36.13 Aligned_cols=12 Identities=58% Similarity=0.852 Sum_probs=11.2
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|++|+|||+++
T Consensus 356 VGPtGvGKTTta 367 (559)
T PRK12727 356 VGPTGAGKTTTI 367 (559)
T ss_pred ECCCCCCHHHHH
Confidence 499999999999
No 386
>PRK14738 gmk guanylate kinase; Provisional
Probab=39.20 E-value=9.7 Score=31.22 Aligned_cols=12 Identities=42% Similarity=0.673 Sum_probs=10.9
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|++|+|||..+
T Consensus 19 ~GpsG~GK~tl~ 30 (206)
T PRK14738 19 SGPSGVGKDAVL 30 (206)
T ss_pred ECcCCCCHHHHH
Confidence 699999999987
No 387
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=39.13 E-value=10 Score=37.52 Aligned_cols=13 Identities=54% Similarity=0.820 Sum_probs=11.6
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-||++|+|||+.+
T Consensus 217 L~GppGtGKT~la 229 (733)
T TIGR01243 217 LYGPPGTGKTLLA 229 (733)
T ss_pred EECCCCCChHHHH
Confidence 4899999999886
No 388
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=39.08 E-value=11 Score=32.21 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=17.0
Q ss_pred CCCCeEEEeCCHHHHHHHHHHH
Q 024439 82 LPGATVVKLRDLDHLLQLLQVG 103 (267)
Q Consensus 82 i~~l~~~~v~s~~e~~~~l~~~ 103 (267)
+.++....+.+.++...+|...
T Consensus 104 l~~I~v~~~~~~~~l~~~L~~l 125 (256)
T PF08423_consen 104 LDNIFVIRVFDLEELLELLEQL 125 (256)
T ss_dssp HHTEEEEE-SSHHHHHHHHHHH
T ss_pred hhceeeeecCCHHHHHHHHHHH
Confidence 5677788899999999888754
No 389
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=39.07 E-value=9.9 Score=31.81 Aligned_cols=12 Identities=42% Similarity=0.756 Sum_probs=10.8
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||+.+
T Consensus 34 ~G~nGsGKSTLl 45 (242)
T PRK11124 34 LGPSGAGKSSLL 45 (242)
T ss_pred ECCCCCCHHHHH
Confidence 599999999887
No 390
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=39.04 E-value=11 Score=34.02 Aligned_cols=13 Identities=38% Similarity=0.825 Sum_probs=11.4
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
--|+.|+||||.+
T Consensus 27 v~G~~GtGKs~l~ 39 (364)
T PF05970_consen 27 VTGPAGTGKSFLI 39 (364)
T ss_pred EEcCCCCChhHHH
Confidence 3599999999997
No 391
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.04 E-value=9.9 Score=34.21 Aligned_cols=13 Identities=38% Similarity=0.475 Sum_probs=11.6
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
=||+.|+|||++.
T Consensus 43 ~~Gp~G~GKTtla 55 (363)
T PRK14961 43 LSGTRGVGKTTIA 55 (363)
T ss_pred EecCCCCCHHHHH
Confidence 3899999999986
No 392
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=38.97 E-value=9.9 Score=34.04 Aligned_cols=12 Identities=42% Similarity=0.938 Sum_probs=10.9
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|++|||||+.+
T Consensus 30 ~G~nGsGKSTLl 41 (352)
T PRK11144 30 FGRSGAGKTSLI 41 (352)
T ss_pred ECCCCCCHHHHH
Confidence 599999999987
No 393
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=38.85 E-value=10 Score=31.41 Aligned_cols=12 Identities=50% Similarity=0.747 Sum_probs=10.9
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
-|+.|||||+.+
T Consensus 35 ~G~nGsGKSTLl 46 (229)
T cd03254 35 VGPTGAGKTTLI 46 (229)
T ss_pred ECCCCCCHHHHH
Confidence 499999999988
No 394
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=38.71 E-value=10 Score=31.73 Aligned_cols=12 Identities=50% Similarity=0.805 Sum_probs=10.8
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||..+
T Consensus 35 ~G~nGsGKSTLl 46 (241)
T PRK10895 35 LGPNGAGKTTTF 46 (241)
T ss_pred ECCCCCCHHHHH
Confidence 599999999887
No 395
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=38.62 E-value=10 Score=31.89 Aligned_cols=12 Identities=42% Similarity=0.706 Sum_probs=10.9
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|++|||||..+
T Consensus 33 ~G~nGsGKSTLl 44 (247)
T TIGR00972 33 IGPSGCGKSTLL 44 (247)
T ss_pred ECCCCCCHHHHH
Confidence 599999999987
No 396
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=38.59 E-value=10 Score=31.10 Aligned_cols=13 Identities=31% Similarity=0.488 Sum_probs=11.1
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-+|+.|||||+.-
T Consensus 4 i~G~pGsGKsT~a 16 (210)
T TIGR01351 4 LLGPPGSGKGTQA 16 (210)
T ss_pred EECCCCCCHHHHH
Confidence 4799999999865
No 397
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=38.43 E-value=10 Score=32.81 Aligned_cols=12 Identities=42% Similarity=0.780 Sum_probs=10.9
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||+.+
T Consensus 43 ~G~nGsGKSTLl 54 (289)
T PRK13645 43 IGTTGSGKSTMI 54 (289)
T ss_pred ECCCCCCHHHHH
Confidence 499999999987
No 398
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=38.41 E-value=11 Score=36.99 Aligned_cols=11 Identities=45% Similarity=0.646 Sum_probs=9.9
Q ss_pred CCccCcccccc
Q 024439 5 QTGTGKTYTLG 15 (267)
Q Consensus 5 ~tgSGKT~Tl~ 15 (267)
+||||||+||.
T Consensus 271 ~TGsGKT~t~~ 281 (667)
T TIGR00348 271 TQGSGKTLTML 281 (667)
T ss_pred ecCCCccHHHH
Confidence 79999999993
No 399
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=38.30 E-value=10 Score=30.99 Aligned_cols=12 Identities=33% Similarity=0.570 Sum_probs=10.9
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
-|+.|||||..+
T Consensus 28 ~G~~gsGKTTli 39 (207)
T TIGR00073 28 MSSPGSGKTTLI 39 (207)
T ss_pred ECCCCCCHHHHH
Confidence 489999999998
No 400
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=38.27 E-value=10 Score=30.21 Aligned_cols=12 Identities=33% Similarity=0.426 Sum_probs=10.6
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||..+
T Consensus 32 ~G~nGsGKSTLl 43 (182)
T cd03215 32 AGLVGNGQTELA 43 (182)
T ss_pred ECCCCCCHHHHH
Confidence 599999999877
No 401
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=38.23 E-value=10 Score=32.68 Aligned_cols=12 Identities=33% Similarity=0.313 Sum_probs=11.1
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
+|++|||||..+
T Consensus 117 ~g~~g~GKttl~ 128 (270)
T TIGR02858 117 ISPPQCGKTTLL 128 (270)
T ss_pred EcCCCCCHHHHH
Confidence 699999999988
No 402
>PHA01747 putative ATP-dependent protease
Probab=38.22 E-value=12 Score=33.76 Aligned_cols=12 Identities=50% Similarity=0.692 Sum_probs=11.1
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.||.||||||+.
T Consensus 196 LgPRGTGKS~~f 207 (425)
T PHA01747 196 LSNRGTGKTTTF 207 (425)
T ss_pred ecCCCCChhhHH
Confidence 599999999998
No 403
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=38.20 E-value=10 Score=31.51 Aligned_cols=12 Identities=42% Similarity=0.744 Sum_probs=10.8
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||..+
T Consensus 17 ~G~nGsGKSTLl 28 (230)
T TIGR01184 17 IGHSGCGKSTLL 28 (230)
T ss_pred ECCCCCCHHHHH
Confidence 599999999987
No 404
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=38.16 E-value=10 Score=33.65 Aligned_cols=12 Identities=33% Similarity=0.733 Sum_probs=10.7
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|++|||||..+
T Consensus 39 vG~sGsGKSTL~ 50 (326)
T PRK11022 39 VGESGSGKSVSS 50 (326)
T ss_pred ECCCCChHHHHH
Confidence 489999999986
No 405
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=38.12 E-value=10 Score=31.54 Aligned_cols=12 Identities=33% Similarity=0.650 Sum_probs=10.7
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||..+
T Consensus 34 ~G~nGsGKSTLl 45 (237)
T cd03252 34 VGRSGSGKSTLT 45 (237)
T ss_pred ECCCCCCHHHHH
Confidence 499999999886
No 406
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=38.12 E-value=11 Score=34.79 Aligned_cols=12 Identities=50% Similarity=0.745 Sum_probs=10.4
Q ss_pred cccCCccCcccc
Q 024439 2 AYGQTGTGKTYT 13 (267)
Q Consensus 2 ayG~tgSGKT~T 13 (267)
-.||||||||+.
T Consensus 231 llGPtGsGKTll 242 (564)
T KOG0745|consen 231 LLGPTGSGKTLL 242 (564)
T ss_pred EECCCCCchhHH
Confidence 469999999985
No 407
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=38.11 E-value=10 Score=31.10 Aligned_cols=12 Identities=50% Similarity=0.733 Sum_probs=10.9
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||..|
T Consensus 33 ~G~nGsGKSTLl 44 (218)
T cd03290 33 VGQVGCGKSSLL 44 (218)
T ss_pred ECCCCCCHHHHH
Confidence 599999999988
No 408
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=38.09 E-value=11 Score=30.82 Aligned_cols=12 Identities=33% Similarity=0.407 Sum_probs=11.1
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|+|||..|
T Consensus 31 tGpNg~GKSTll 42 (199)
T cd03283 31 TGSNMSGKSTFL 42 (199)
T ss_pred ECCCCCChHHHH
Confidence 499999999998
No 409
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=38.08 E-value=12 Score=30.79 Aligned_cols=13 Identities=54% Similarity=0.836 Sum_probs=11.6
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-+|++|||||...
T Consensus 24 i~G~~GsGKT~l~ 36 (218)
T cd01394 24 VYGPPGTGKTNIA 36 (218)
T ss_pred EECCCCCCHHHHH
Confidence 4799999999987
No 410
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=38.00 E-value=10 Score=31.60 Aligned_cols=12 Identities=42% Similarity=0.761 Sum_probs=10.6
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||+.+
T Consensus 33 ~G~nGsGKSTLl 44 (240)
T PRK09493 33 IGPSGSGKSTLL 44 (240)
T ss_pred ECCCCCCHHHHH
Confidence 499999999886
No 411
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=37.98 E-value=11 Score=34.96 Aligned_cols=13 Identities=38% Similarity=0.677 Sum_probs=11.7
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-||+.|+|||+..
T Consensus 199 l~GppGtGKT~lA 211 (459)
T PRK11331 199 LQGPPGVGKTFVA 211 (459)
T ss_pred EECCCCCCHHHHH
Confidence 4899999999887
No 412
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=37.96 E-value=11 Score=30.53 Aligned_cols=12 Identities=42% Similarity=0.639 Sum_probs=10.7
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
-|+.|||||..+
T Consensus 32 ~G~nGsGKSTLl 43 (195)
T PRK13541 32 KGANGCGKSSLL 43 (195)
T ss_pred ECCCCCCHHHHH
Confidence 489999999987
No 413
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=37.92 E-value=11 Score=31.70 Aligned_cols=12 Identities=33% Similarity=0.692 Sum_probs=10.7
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||+.+
T Consensus 35 ~G~nGsGKSTLl 46 (241)
T PRK14250 35 VGPSGAGKSTLI 46 (241)
T ss_pred ECCCCCCHHHHH
Confidence 499999999887
No 414
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=37.90 E-value=11 Score=30.97 Aligned_cols=12 Identities=58% Similarity=0.861 Sum_probs=10.7
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||+.+
T Consensus 37 ~G~nGsGKSTLl 48 (218)
T cd03266 37 LGPNGAGKTTTL 48 (218)
T ss_pred ECCCCCCHHHHH
Confidence 499999999887
No 415
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=37.88 E-value=11 Score=31.98 Aligned_cols=12 Identities=42% Similarity=0.664 Sum_probs=10.9
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||+.+
T Consensus 31 ~G~NGsGKSTLl 42 (246)
T cd03237 31 LGPNGIGKTTFI 42 (246)
T ss_pred ECCCCCCHHHHH
Confidence 599999999887
No 416
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=37.83 E-value=11 Score=31.65 Aligned_cols=12 Identities=50% Similarity=0.861 Sum_probs=10.7
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||..+
T Consensus 33 ~G~nGsGKSTLl 44 (242)
T cd03295 33 IGPSGSGKTTTM 44 (242)
T ss_pred ECCCCCCHHHHH
Confidence 599999999877
No 417
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=37.81 E-value=11 Score=33.42 Aligned_cols=12 Identities=50% Similarity=0.753 Sum_probs=10.9
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|++|||||+.+
T Consensus 2 ~G~nGsGKSTLl 13 (325)
T TIGR01187 2 LGPSGCGKTTLL 13 (325)
T ss_pred cCCCCCCHHHHH
Confidence 599999999987
No 418
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=37.77 E-value=13 Score=29.57 Aligned_cols=11 Identities=45% Similarity=0.679 Sum_probs=9.5
Q ss_pred cCCccCccccc
Q 024439 4 GQTGTGKTYTL 14 (267)
Q Consensus 4 G~tgSGKT~Tl 14 (267)
|+.|||||+.-
T Consensus 7 G~pGsG~TTva 17 (179)
T COG1102 7 GLPGSGKTTVA 17 (179)
T ss_pred cCCCCChhHHH
Confidence 89999999764
No 419
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=37.75 E-value=10 Score=34.20 Aligned_cols=12 Identities=42% Similarity=0.780 Sum_probs=10.9
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|++|||||+.+
T Consensus 25 ~G~sGsGKSTLL 36 (363)
T TIGR01186 25 MGLSGSGKSTTV 36 (363)
T ss_pred ECCCCChHHHHH
Confidence 599999999986
No 420
>PRK01184 hypothetical protein; Provisional
Probab=37.71 E-value=12 Score=29.87 Aligned_cols=12 Identities=33% Similarity=0.401 Sum_probs=10.3
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||+..
T Consensus 7 ~G~~GsGKsT~a 18 (184)
T PRK01184 7 VGMPGSGKGEFS 18 (184)
T ss_pred ECCCCCCHHHHH
Confidence 599999999953
No 421
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=37.71 E-value=11 Score=31.77 Aligned_cols=12 Identities=42% Similarity=0.681 Sum_probs=11.0
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||..+
T Consensus 35 ~G~nGsGKSTLl 46 (250)
T PRK14240 35 IGPSGCGKSTFL 46 (250)
T ss_pred ECCCCCCHHHHH
Confidence 599999999988
No 422
>PRK04296 thymidine kinase; Provisional
Probab=37.67 E-value=9.7 Score=30.78 Aligned_cols=13 Identities=38% Similarity=0.718 Sum_probs=11.3
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-+|+.|+|||..+
T Consensus 7 itG~~GsGKTT~~ 19 (190)
T PRK04296 7 IYGAMNSGKSTEL 19 (190)
T ss_pred EECCCCCHHHHHH
Confidence 3799999999777
No 423
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=37.62 E-value=11 Score=33.70 Aligned_cols=12 Identities=33% Similarity=0.603 Sum_probs=10.9
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|+|||++|
T Consensus 73 lGpNGaGKSTLl 84 (340)
T PRK13536 73 LGPNGAGKSTIA 84 (340)
T ss_pred ECCCCCCHHHHH
Confidence 499999999997
No 424
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=37.61 E-value=11 Score=32.07 Aligned_cols=12 Identities=42% Similarity=0.725 Sum_probs=10.9
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
-|++|+|||+.+
T Consensus 35 lGpSGcGKSTLL 46 (248)
T COG1116 35 LGPSGCGKSTLL 46 (248)
T ss_pred ECCCCCCHHHHH
Confidence 499999999987
No 425
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=37.59 E-value=12 Score=32.03 Aligned_cols=12 Identities=50% Similarity=0.617 Sum_probs=11.1
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
+|++|+|||...
T Consensus 27 ~G~~GtGKT~lA 38 (262)
T TIGR02640 27 RGPAGTGKTTLA 38 (262)
T ss_pred EcCCCCCHHHHH
Confidence 799999999987
No 426
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=37.51 E-value=11 Score=31.50 Aligned_cols=12 Identities=33% Similarity=0.681 Sum_probs=10.9
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||+.+
T Consensus 35 ~G~nGsGKSTLl 46 (238)
T cd03249 35 VGSSGCGKSTVV 46 (238)
T ss_pred EeCCCCCHHHHH
Confidence 499999999987
No 427
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=37.50 E-value=12 Score=34.50 Aligned_cols=13 Identities=46% Similarity=0.639 Sum_probs=11.3
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-+|++|+|||+..
T Consensus 113 l~Gp~GtGKT~lA 125 (412)
T PRK05342 113 LIGPTGSGKTLLA 125 (412)
T ss_pred EEcCCCCCHHHHH
Confidence 3799999999876
No 428
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=37.36 E-value=13 Score=35.19 Aligned_cols=14 Identities=43% Similarity=0.762 Sum_probs=11.8
Q ss_pred CcccCCccCccccc
Q 024439 1 MAYGQTGTGKTYTL 14 (267)
Q Consensus 1 ~ayG~tgSGKT~Tl 14 (267)
+-+|+||||||-..
T Consensus 1 LL~g~TGsGKT~v~ 14 (505)
T TIGR00595 1 LLFGVTGSGKTEVY 14 (505)
T ss_pred CccCCCCCCHHHHH
Confidence 35899999999875
No 429
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=37.35 E-value=11 Score=32.91 Aligned_cols=12 Identities=42% Similarity=0.800 Sum_probs=11.0
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|+|||+.|
T Consensus 34 ~G~NGaGKTTLl 45 (301)
T TIGR03522 34 LGPNGAGKSTTM 45 (301)
T ss_pred ECCCCCCHHHHH
Confidence 599999999998
No 430
>PRK13909 putative recombination protein RecB; Provisional
Probab=37.33 E-value=11 Score=38.30 Aligned_cols=10 Identities=50% Similarity=1.029 Sum_probs=8.0
Q ss_pred CCccCccccc
Q 024439 5 QTGTGKTYTL 14 (267)
Q Consensus 5 ~tgSGKT~Tl 14 (267)
+.||||||||
T Consensus 6 sAGsGKT~~L 15 (910)
T PRK13909 6 SAGSGKTFAL 15 (910)
T ss_pred CCCCchhHHH
Confidence 4688888887
No 431
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=37.30 E-value=11 Score=31.95 Aligned_cols=12 Identities=50% Similarity=0.830 Sum_probs=10.7
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||+.+
T Consensus 38 ~G~nGsGKSTLl 49 (258)
T PRK11701 38 VGESGSGKTTLL 49 (258)
T ss_pred ECCCCCCHHHHH
Confidence 499999999887
No 432
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=37.29 E-value=11 Score=34.08 Aligned_cols=12 Identities=42% Similarity=0.695 Sum_probs=11.0
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|++|||||+.|
T Consensus 35 ~G~nGsGKSTLL 46 (369)
T PRK11000 35 VGPSGCGKSTLL 46 (369)
T ss_pred ECCCCCcHHHHH
Confidence 599999999987
No 433
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=37.24 E-value=11 Score=32.01 Aligned_cols=12 Identities=50% Similarity=0.725 Sum_probs=11.1
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
+|+.|||||.-+
T Consensus 63 ~G~NGsGKTTLL 74 (257)
T COG1119 63 VGPNGAGKTTLL 74 (257)
T ss_pred ECCCCCCHHHHH
Confidence 799999999987
No 434
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=37.16 E-value=11 Score=30.69 Aligned_cols=12 Identities=33% Similarity=0.623 Sum_probs=10.9
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||+.+
T Consensus 39 ~G~nGsGKSTLl 50 (202)
T cd03233 39 LGRPGSGCSTLL 50 (202)
T ss_pred ECCCCCCHHHHH
Confidence 499999999987
No 435
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=37.14 E-value=11 Score=30.55 Aligned_cols=12 Identities=42% Similarity=0.708 Sum_probs=10.8
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|+|||+.+
T Consensus 37 ~G~nG~GKSTLl 48 (204)
T cd03250 37 VGPVGSGKSSLL 48 (204)
T ss_pred ECCCCCCHHHHH
Confidence 599999999977
No 436
>PTZ00424 helicase 45; Provisional
Probab=37.09 E-value=10 Score=34.32 Aligned_cols=13 Identities=54% Similarity=0.698 Sum_probs=10.7
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
..++||||||.+.
T Consensus 70 i~apTGsGKT~~~ 82 (401)
T PTZ00424 70 GQAQSGTGKTATF 82 (401)
T ss_pred EECCCCChHHHHH
Confidence 4589999999764
No 437
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=37.08 E-value=11 Score=29.70 Aligned_cols=12 Identities=42% Similarity=0.750 Sum_probs=10.6
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||..+
T Consensus 34 ~G~nGsGKstLl 45 (171)
T cd03228 34 VGPSGSGKSTLL 45 (171)
T ss_pred ECCCCCCHHHHH
Confidence 589999999876
No 438
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=37.08 E-value=11 Score=30.47 Aligned_cols=12 Identities=42% Similarity=0.844 Sum_probs=8.9
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|..|||||+.+
T Consensus 6 ~G~pGsGKS~~a 17 (193)
T PF05707_consen 6 TGKPGSGKSYYA 17 (193)
T ss_dssp E--TTSSHHHHH
T ss_pred EcCCCCcHhHHH
Confidence 699999999876
No 439
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=37.04 E-value=11 Score=32.21 Aligned_cols=12 Identities=33% Similarity=0.612 Sum_probs=10.8
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||+.+
T Consensus 33 ~G~nGsGKSTLl 44 (271)
T PRK13638 33 VGANGCGKSTLF 44 (271)
T ss_pred ECCCCCCHHHHH
Confidence 599999999887
No 440
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=37.03 E-value=13 Score=32.75 Aligned_cols=12 Identities=42% Similarity=0.454 Sum_probs=11.0
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
+|||+||||..-
T Consensus 9 ~GPTAsGKT~la 20 (308)
T COG0324 9 AGPTASGKTALA 20 (308)
T ss_pred ECCCCcCHHHHH
Confidence 799999999886
No 441
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=36.99 E-value=12 Score=32.18 Aligned_cols=12 Identities=33% Similarity=0.659 Sum_probs=11.0
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
-|.+|||||.-+
T Consensus 27 tGvSGsGKStL~ 38 (261)
T cd03271 27 TGVSGSGKSSLI 38 (261)
T ss_pred ECCCCCchHHHH
Confidence 499999999998
No 442
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=36.99 E-value=17 Score=28.85 Aligned_cols=12 Identities=50% Similarity=0.675 Sum_probs=9.9
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
-|+.|+|||+.+
T Consensus 5 TG~pG~GKTTll 16 (168)
T PF03266_consen 5 TGPPGVGKTTLL 16 (168)
T ss_dssp ES-TTSSHHHHH
T ss_pred ECcCCCCHHHHH
Confidence 389999999998
No 443
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=36.99 E-value=11 Score=31.63 Aligned_cols=12 Identities=50% Similarity=0.789 Sum_probs=10.8
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|++|||||..+
T Consensus 35 ~G~nGsGKSTLl 46 (250)
T PRK11264 35 IGPSGSGKTTLL 46 (250)
T ss_pred ECCCCCCHHHHH
Confidence 599999999877
No 444
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=36.95 E-value=12 Score=29.28 Aligned_cols=12 Identities=33% Similarity=0.504 Sum_probs=10.4
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|++|+|||.+.
T Consensus 20 ~G~sG~GKStla 31 (149)
T cd01918 20 TGPSGIGKSELA 31 (149)
T ss_pred EcCCCCCHHHHH
Confidence 599999999766
No 445
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=36.87 E-value=11 Score=31.16 Aligned_cols=12 Identities=42% Similarity=0.673 Sum_probs=10.6
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||..+
T Consensus 39 ~G~nGsGKSTLl 50 (225)
T PRK10247 39 TGPSGCGKSTLL 50 (225)
T ss_pred ECCCCCCHHHHH
Confidence 599999999877
No 446
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=36.83 E-value=11 Score=27.56 Aligned_cols=12 Identities=50% Similarity=0.767 Sum_probs=11.0
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|+|||..+
T Consensus 2 iG~~~~GKStl~ 13 (157)
T cd00882 2 VGDSGVGKTSLL 13 (157)
T ss_pred CCcCCCcHHHHH
Confidence 599999999987
No 447
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=36.82 E-value=11 Score=33.00 Aligned_cols=12 Identities=58% Similarity=0.839 Sum_probs=10.9
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|++|||||+.+
T Consensus 39 iG~nGsGKSTLl 50 (305)
T PRK13651 39 IGQTGSGKTTFI 50 (305)
T ss_pred ECCCCCcHHHHH
Confidence 599999999987
No 448
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=36.77 E-value=11 Score=30.48 Aligned_cols=12 Identities=50% Similarity=0.708 Sum_probs=10.8
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||..+
T Consensus 33 ~G~nGsGKSTLl 44 (200)
T PRK13540 33 KGSNGAGKTTLL 44 (200)
T ss_pred ECCCCCCHHHHH
Confidence 499999999987
No 449
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=36.73 E-value=11 Score=31.87 Aligned_cols=12 Identities=33% Similarity=0.667 Sum_probs=10.9
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||+.+
T Consensus 36 ~G~NGsGKSTLl 47 (251)
T PRK09544 36 LGPNGAGKSTLV 47 (251)
T ss_pred ECCCCCCHHHHH
Confidence 599999999987
No 450
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=36.73 E-value=12 Score=34.45 Aligned_cols=13 Identities=46% Similarity=0.639 Sum_probs=11.5
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-+|++|+|||+..
T Consensus 121 L~GP~GsGKT~lA 133 (413)
T TIGR00382 121 LIGPTGSGKTLLA 133 (413)
T ss_pred EECCCCcCHHHHH
Confidence 3799999999987
No 451
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=36.72 E-value=11 Score=32.40 Aligned_cols=12 Identities=42% Similarity=0.816 Sum_probs=11.0
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||..+
T Consensus 39 ~G~nGsGKSTLl 50 (279)
T PRK13650 39 IGHNGSGKSTTV 50 (279)
T ss_pred ECCCCCCHHHHH
Confidence 599999999997
No 452
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=36.71 E-value=11 Score=31.72 Aligned_cols=12 Identities=42% Similarity=0.706 Sum_probs=11.0
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||+.+
T Consensus 38 ~G~nGsGKSTLl 49 (253)
T PRK14261 38 IGPSGCGKSTLL 49 (253)
T ss_pred ECCCCCCHHHHH
Confidence 599999999987
No 453
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=36.71 E-value=13 Score=35.30 Aligned_cols=12 Identities=42% Similarity=0.717 Sum_probs=11.3
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.||+|+|||.|+
T Consensus 116 tGPsGcGKSTtv 127 (634)
T KOG1970|consen 116 TGPSGCGKSTTV 127 (634)
T ss_pred eCCCCCCchhHH
Confidence 599999999998
No 454
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=36.64 E-value=11 Score=31.67 Aligned_cols=12 Identities=42% Similarity=0.803 Sum_probs=10.9
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|++|||||+.+
T Consensus 35 ~G~nGsGKSTLl 46 (253)
T TIGR02323 35 VGESGSGKSTLL 46 (253)
T ss_pred ECCCCCCHHHHH
Confidence 599999999987
No 455
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=36.60 E-value=15 Score=33.05 Aligned_cols=12 Identities=58% Similarity=0.758 Sum_probs=10.6
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
-|+||||||.=|
T Consensus 279 TGpTGsGKTTFl 290 (514)
T KOG2373|consen 279 TGPTGSGKTTFL 290 (514)
T ss_pred ecCCCCCceeEe
Confidence 499999999877
No 456
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=36.45 E-value=12 Score=36.50 Aligned_cols=13 Identities=38% Similarity=0.667 Sum_probs=11.9
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-||++|+|||.++
T Consensus 115 L~GP~GsGKTTl~ 127 (637)
T TIGR00602 115 ITGPSGCGKSTTI 127 (637)
T ss_pred EECCCCCCHHHHH
Confidence 3899999999998
No 457
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=36.43 E-value=12 Score=31.60 Aligned_cols=12 Identities=42% Similarity=0.681 Sum_probs=10.6
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||+.+
T Consensus 36 ~G~nGsGKSTLl 47 (251)
T PRK14251 36 IGPSGCGKSTFL 47 (251)
T ss_pred ECCCCCCHHHHH
Confidence 599999999876
No 458
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=36.40 E-value=12 Score=32.12 Aligned_cols=12 Identities=42% Similarity=0.736 Sum_probs=10.7
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||..+
T Consensus 56 ~G~nGsGKSTLl 67 (269)
T cd03294 56 MGLSGSGKSTLL 67 (269)
T ss_pred ECCCCCCHHHHH
Confidence 489999999886
No 459
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=36.40 E-value=12 Score=32.07 Aligned_cols=12 Identities=33% Similarity=0.637 Sum_probs=10.9
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||..+
T Consensus 41 ~G~nGsGKSTLl 52 (269)
T PRK13648 41 VGHNGSGKSTIA 52 (269)
T ss_pred ECCCCCCHHHHH
Confidence 499999999987
No 460
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=36.34 E-value=12 Score=31.97 Aligned_cols=12 Identities=42% Similarity=0.742 Sum_probs=10.9
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||..+
T Consensus 44 ~G~NGsGKSTLl 55 (257)
T PRK11247 44 VGRSGCGKSTLL 55 (257)
T ss_pred ECCCCCCHHHHH
Confidence 599999999987
No 461
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=36.30 E-value=12 Score=32.01 Aligned_cols=12 Identities=42% Similarity=0.681 Sum_probs=10.8
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|++|||||..+
T Consensus 53 ~G~nGsGKSTLl 64 (268)
T PRK14248 53 IGPSGCGKSTFL 64 (268)
T ss_pred ECCCCCCHHHHH
Confidence 599999999987
No 462
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=36.27 E-value=12 Score=31.14 Aligned_cols=12 Identities=33% Similarity=0.689 Sum_probs=11.0
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||+.+
T Consensus 34 ~G~nGsGKSTLl 45 (234)
T cd03251 34 VGPSGSGKSTLV 45 (234)
T ss_pred ECCCCCCHHHHH
Confidence 599999999987
No 463
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=36.26 E-value=12 Score=29.78 Aligned_cols=13 Identities=23% Similarity=0.284 Sum_probs=10.7
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-.|++|||||.--
T Consensus 4 i~G~~~sGKS~~a 16 (169)
T cd00544 4 VTGGARSGKSRFA 16 (169)
T ss_pred EECCCCCCHHHHH
Confidence 4799999999755
No 464
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=36.17 E-value=12 Score=31.57 Aligned_cols=12 Identities=42% Similarity=0.681 Sum_probs=10.8
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
-|+.|||||..+
T Consensus 35 ~G~nGsGKSTLl 46 (250)
T PRK14245 35 IGPSGCGKSTFL 46 (250)
T ss_pred ECCCCCCHHHHH
Confidence 489999999987
No 465
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=36.14 E-value=12 Score=31.62 Aligned_cols=12 Identities=42% Similarity=0.697 Sum_probs=10.7
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||+.+
T Consensus 28 ~G~nGsGKSTLl 39 (248)
T PRK03695 28 VGPNGAGKSTLL 39 (248)
T ss_pred ECCCCCCHHHHH
Confidence 499999999887
No 466
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=36.10 E-value=14 Score=32.13 Aligned_cols=29 Identities=24% Similarity=0.225 Sum_probs=18.5
Q ss_pred ccCCccCccccc---cc---cCCCCCCCcChHHHH
Q 024439 3 YGQTGTGKTYTL---GR---LGKDDASERGIMVRA 31 (267)
Q Consensus 3 yG~tgSGKT~Tl---~G---~~~~~~~~~Gli~r~ 31 (267)
.|+.|+|||+|+ .| +..|.-.-.|.+|.-
T Consensus 56 lGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~ 90 (325)
T COG4586 56 LGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFR 90 (325)
T ss_pred EcCCCCcchhhHHHHhCccccCCCeEEecCcCcch
Confidence 489999999998 34 222333344666654
No 467
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=36.07 E-value=12 Score=31.83 Aligned_cols=12 Identities=42% Similarity=0.706 Sum_probs=10.6
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|++|||||..+
T Consensus 45 ~G~nGsGKSTLl 56 (260)
T PRK10744 45 IGPSGCGKSTLL 56 (260)
T ss_pred ECCCCCCHHHHH
Confidence 499999999886
No 468
>PRK10908 cell division protein FtsE; Provisional
Probab=36.05 E-value=12 Score=30.87 Aligned_cols=12 Identities=42% Similarity=0.742 Sum_probs=10.7
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|++|||||..+
T Consensus 34 ~G~nGsGKSTLl 45 (222)
T PRK10908 34 TGHSGAGKSTLL 45 (222)
T ss_pred ECCCCCCHHHHH
Confidence 499999999887
No 469
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=36.05 E-value=14 Score=32.89 Aligned_cols=33 Identities=12% Similarity=0.253 Sum_probs=21.8
Q ss_pred CCccCCCCeEEEeCCHHHHHHHHHHHhhcccccc
Q 024439 78 GEVSLPGATVVKLRDLDHLLQLLQVGEVNRHAAN 111 (267)
Q Consensus 78 g~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~ 111 (267)
|.+.|..+..+.=.++.+++-++..|+. ++...
T Consensus 227 ~vIEiAPlAyMRGRTL~dAfVIlDEaQN-tT~~Q 259 (348)
T COG1702 227 GVIEIAPLAYMRGRTLNDAFVILDEAQN-TTVGQ 259 (348)
T ss_pred CcEEecchhhhhcCCCCCeEEEEecccc-cchhh
Confidence 4466666666666777777777777765 54443
No 470
>PRK02496 adk adenylate kinase; Provisional
Probab=36.03 E-value=13 Score=29.61 Aligned_cols=13 Identities=31% Similarity=0.437 Sum_probs=11.2
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-.|+.|||||+..
T Consensus 6 i~G~pGsGKst~a 18 (184)
T PRK02496 6 FLGPPGAGKGTQA 18 (184)
T ss_pred EECCCCCCHHHHH
Confidence 3799999999876
No 471
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=36.01 E-value=13 Score=30.59 Aligned_cols=23 Identities=17% Similarity=0.183 Sum_probs=16.2
Q ss_pred CCCCeEEEeCCHHHHHHHHHHHh
Q 024439 82 LPGATVVKLRDLDHLLQLLQVGE 104 (267)
Q Consensus 82 i~~l~~~~v~s~~e~~~~l~~~~ 104 (267)
+.++..+.+.+.+++...+..-.
T Consensus 85 ~~~i~~~~~~~~~~~~~~l~~~~ 107 (226)
T cd01393 85 LDNIYVARPYNGEQQLEIVEELE 107 (226)
T ss_pred hccEEEEeCCCHHHHHHHHHHHH
Confidence 45667777788888887776543
No 472
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=35.99 E-value=12 Score=31.29 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=17.5
Q ss_pred ccCCccCccccccccCCCCCCCcChHHHHHHHHHHhcc
Q 024439 3 YGQTGTGKTYTLGRLGKDDASERGIMVRALEDIISSMS 40 (267)
Q Consensus 3 yG~tgSGKT~Tl~G~~~~~~~~~Gli~r~~~~lf~~~~ 40 (267)
.||+|+|||+-| |+++.+...+.
T Consensus 39 IGPSGcGKST~L---------------R~lNRmndl~~ 61 (253)
T COG1117 39 IGPSGCGKSTLL---------------RCLNRMNDLIP 61 (253)
T ss_pred ECCCCcCHHHHH---------------HHHHhhcccCc
Confidence 599999999766 67777666654
No 473
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=35.98 E-value=12 Score=31.57 Aligned_cols=12 Identities=42% Similarity=0.720 Sum_probs=10.7
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|++|||||+.+
T Consensus 36 ~G~nGsGKSTLl 47 (253)
T PRK14267 36 MGPSGCGKSTLL 47 (253)
T ss_pred ECCCCCCHHHHH
Confidence 499999999887
No 474
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=35.92 E-value=12 Score=32.17 Aligned_cols=12 Identities=50% Similarity=0.816 Sum_probs=11.1
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|++|||||-.|
T Consensus 27 ~G~nGsGKS~il 38 (276)
T cd03241 27 TGETGAGKSILL 38 (276)
T ss_pred EcCCCCCHHHHH
Confidence 699999999988
No 475
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=35.83 E-value=14 Score=36.10 Aligned_cols=14 Identities=36% Similarity=0.596 Sum_probs=12.4
Q ss_pred CcccCCccCccccc
Q 024439 1 MAYGQTGTGKTYTL 14 (267)
Q Consensus 1 ~ayG~tgSGKT~Tl 14 (267)
+++|+||||||..+
T Consensus 179 lviapTgSGKgvg~ 192 (636)
T PRK13880 179 LTYAPTRSGKGVGL 192 (636)
T ss_pred EEEecCCCCCceEE
Confidence 47899999999976
No 476
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=35.83 E-value=12 Score=31.79 Aligned_cols=12 Identities=42% Similarity=0.728 Sum_probs=10.8
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||+.+
T Consensus 34 ~G~nGsGKSTLl 45 (258)
T PRK13548 34 LGPNGAGKSTLL 45 (258)
T ss_pred ECCCCCCHHHHH
Confidence 599999999887
No 477
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=35.81 E-value=12 Score=29.70 Aligned_cols=12 Identities=42% Similarity=0.828 Sum_probs=10.7
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||..+
T Consensus 34 ~G~nGsGKStLl 45 (178)
T cd03247 34 LGRSGSGKSTLL 45 (178)
T ss_pred ECCCCCCHHHHH
Confidence 599999999877
No 478
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=35.77 E-value=12 Score=32.46 Aligned_cols=12 Identities=58% Similarity=0.985 Sum_probs=11.4
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
||++++|||.++
T Consensus 199 ~G~Ss~GKTt~~ 210 (286)
T PF06048_consen 199 YGQSSSGKTTAL 210 (286)
T ss_pred EeCCCCCHHHHH
Confidence 899999999987
No 479
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=35.76 E-value=13 Score=31.28 Aligned_cols=13 Identities=31% Similarity=0.332 Sum_probs=10.9
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
=+|+.|||||.-.
T Consensus 4 LmG~~~SGKTSi~ 16 (232)
T PF04670_consen 4 LMGPRRSGKTSIR 16 (232)
T ss_dssp EEESTTSSHHHHH
T ss_pred EEcCCCCChhhHH
Confidence 3899999999754
No 480
>PLN02165 adenylate isopentenyltransferase
Probab=35.70 E-value=13 Score=33.05 Aligned_cols=12 Identities=42% Similarity=0.636 Sum_probs=10.9
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+||||||...
T Consensus 49 iGPTGSGKStLA 60 (334)
T PLN02165 49 MGATGSGKSRLS 60 (334)
T ss_pred ECCCCCcHHHHH
Confidence 599999999887
No 481
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=35.63 E-value=12 Score=31.68 Aligned_cols=12 Identities=42% Similarity=0.742 Sum_probs=10.9
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||..+
T Consensus 36 ~G~nGsGKSTLl 47 (258)
T PRK14241 36 IGPSGCGKSTVL 47 (258)
T ss_pred ECCCCCCHHHHH
Confidence 499999999988
No 482
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=35.57 E-value=12 Score=29.88 Aligned_cols=12 Identities=33% Similarity=0.695 Sum_probs=11.1
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
+|+.|||||-.|
T Consensus 28 ~G~NGsGKSnil 39 (178)
T cd03239 28 VGPNGSGKSNIV 39 (178)
T ss_pred ECCCCCCHHHHH
Confidence 699999999988
No 483
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=35.49 E-value=15 Score=31.42 Aligned_cols=12 Identities=50% Similarity=0.805 Sum_probs=10.9
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|+|||+|+
T Consensus 34 lG~NGAGKTTtf 45 (300)
T COG4152 34 LGPNGAGKTTTF 45 (300)
T ss_pred ecCCCCCccchH
Confidence 489999999997
No 484
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=35.47 E-value=14 Score=29.93 Aligned_cols=12 Identities=42% Similarity=0.714 Sum_probs=9.5
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|++|||||.-+
T Consensus 9 ~Gps~SGKTaLf 20 (181)
T PF09439_consen 9 VGPSGSGKTALF 20 (181)
T ss_dssp E-STTSSHHHHH
T ss_pred EcCCCCCHHHHH
Confidence 599999999776
No 485
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=35.46 E-value=12 Score=31.40 Aligned_cols=12 Identities=42% Similarity=0.681 Sum_probs=10.7
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|++|||||..+
T Consensus 34 ~G~nGsGKSTLl 45 (246)
T PRK14269 34 IGASGCGKSTFL 45 (246)
T ss_pred ECCCCCCHHHHH
Confidence 489999999887
No 486
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=35.40 E-value=22 Score=37.24 Aligned_cols=10 Identities=60% Similarity=1.042 Sum_probs=9.0
Q ss_pred CCccCccccc
Q 024439 5 QTGTGKTYTL 14 (267)
Q Consensus 5 ~tgSGKT~Tl 14 (267)
..||||||+|
T Consensus 24 SAGSGKT~vL 33 (1139)
T COG1074 24 SAGTGKTFVL 33 (1139)
T ss_pred cCCCCchhHH
Confidence 4799999999
No 487
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=35.39 E-value=12 Score=28.88 Aligned_cols=12 Identities=42% Similarity=0.722 Sum_probs=10.4
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||..+
T Consensus 31 ~G~nGsGKStll 42 (157)
T cd00267 31 VGPNGSGKSTLL 42 (157)
T ss_pred ECCCCCCHHHHH
Confidence 599999999776
No 488
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=35.38 E-value=12 Score=30.06 Aligned_cols=12 Identities=50% Similarity=0.830 Sum_probs=10.8
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||+.+
T Consensus 39 ~G~nGsGKSTLl 50 (192)
T cd03232 39 MGESGAGKTTLL 50 (192)
T ss_pred ECCCCCCHHHHH
Confidence 499999999987
No 489
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=35.32 E-value=13 Score=33.46 Aligned_cols=12 Identities=42% Similarity=0.847 Sum_probs=11.6
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
||+-|.|||+.|
T Consensus 68 ~G~vG~GKT~Lm 79 (362)
T PF03969_consen 68 WGPVGRGKTMLM 79 (362)
T ss_pred ECCCCCchhHHH
Confidence 899999999999
No 490
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=35.32 E-value=12 Score=32.39 Aligned_cols=13 Identities=31% Similarity=0.450 Sum_probs=11.1
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
..|+.|||||+.-
T Consensus 7 l~G~pGSGKSTla 19 (300)
T PHA02530 7 TVGVPGSGKSTWA 19 (300)
T ss_pred EEcCCCCCHHHHH
Confidence 4699999999875
No 491
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=35.31 E-value=12 Score=32.95 Aligned_cols=13 Identities=46% Similarity=0.562 Sum_probs=11.8
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-.|++|||||+.|
T Consensus 148 i~G~t~sGKTt~l 160 (312)
T COG0630 148 ICGGTASGKTTLL 160 (312)
T ss_pred EECCCCCCHHHHH
Confidence 3699999999999
No 492
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=35.30 E-value=12 Score=32.08 Aligned_cols=12 Identities=42% Similarity=0.814 Sum_probs=10.7
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||+.+
T Consensus 39 ~G~nGsGKSTLl 50 (280)
T PRK13649 39 IGHTGSGKSTIM 50 (280)
T ss_pred ECCCCCCHHHHH
Confidence 499999999886
No 493
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=35.25 E-value=12 Score=32.26 Aligned_cols=12 Identities=33% Similarity=0.523 Sum_probs=10.7
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
-|.+|||||+..
T Consensus 5 tG~SGSGKTTv~ 16 (277)
T cd02029 5 TGSSGAGTTTVK 16 (277)
T ss_pred ECCCCCCHHHHH
Confidence 489999999887
No 494
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=35.24 E-value=12 Score=33.34 Aligned_cols=12 Identities=33% Similarity=0.703 Sum_probs=10.9
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|++|||||+.+
T Consensus 37 iG~nGsGKSTLl 48 (343)
T PRK11153 37 IGASGAGKSTLI 48 (343)
T ss_pred ECCCCCcHHHHH
Confidence 499999999987
No 495
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=35.24 E-value=14 Score=30.58 Aligned_cols=13 Identities=46% Similarity=0.779 Sum_probs=11.5
Q ss_pred cccCCccCccccc
Q 024439 2 AYGQTGTGKTYTL 14 (267)
Q Consensus 2 ayG~tgSGKT~Tl 14 (267)
-+|++|||||...
T Consensus 28 i~G~~GsGKT~l~ 40 (225)
T PRK09361 28 IYGPPGSGKTNIC 40 (225)
T ss_pred EECCCCCCHHHHH
Confidence 3799999999887
No 496
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=35.22 E-value=12 Score=31.00 Aligned_cols=12 Identities=42% Similarity=0.808 Sum_probs=10.6
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||..+
T Consensus 18 ~G~nGsGKSTLl 29 (230)
T TIGR02770 18 VGESGSGKSLTC 29 (230)
T ss_pred ECCCCCCHHHHH
Confidence 599999999876
No 497
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=35.19 E-value=12 Score=31.80 Aligned_cols=12 Identities=33% Similarity=0.628 Sum_probs=10.7
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|++|||||+.+
T Consensus 43 ~G~nGsGKSTLl 54 (265)
T TIGR02769 43 LGRSGCGKSTLA 54 (265)
T ss_pred ECCCCCCHHHHH
Confidence 499999999887
No 498
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=35.19 E-value=12 Score=31.39 Aligned_cols=12 Identities=33% Similarity=0.578 Sum_probs=10.7
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
.|+.|||||+.+
T Consensus 39 ~G~nGsGKSTLl 50 (252)
T CHL00131 39 MGPNGSGKSTLS 50 (252)
T ss_pred ECCCCCCHHHHH
Confidence 499999999887
No 499
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=35.17 E-value=12 Score=31.00 Aligned_cols=34 Identities=24% Similarity=0.280 Sum_probs=21.5
Q ss_pred ccCCccCccccccccC---CCCCCCcChHHHHHHHHH
Q 024439 3 YGQTGTGKTYTLGRLG---KDDASERGIMVRALEDII 36 (267)
Q Consensus 3 yG~tgSGKT~Tl~G~~---~~~~~~~Gli~r~~~~lf 36 (267)
-|++|||||+..--.. .-.....|.+.|++....
T Consensus 8 ~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~~~~~ 44 (217)
T TIGR00017 8 DGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAIALAA 44 (217)
T ss_pred ECCCCCCHHHHHHHHHHHhCCceeeCchHHHHHHHHH
Confidence 3899999999872100 112235688888876544
No 500
>PHA02244 ATPase-like protein
Probab=35.17 E-value=14 Score=33.58 Aligned_cols=12 Identities=33% Similarity=0.515 Sum_probs=11.2
Q ss_pred ccCCccCccccc
Q 024439 3 YGQTGTGKTYTL 14 (267)
Q Consensus 3 yG~tgSGKT~Tl 14 (267)
+|++|+|||+..
T Consensus 125 ~GppGtGKTtLA 136 (383)
T PHA02244 125 KGGAGSGKNHIA 136 (383)
T ss_pred ECCCCCCHHHHH
Confidence 799999999988
Done!