Query 024440
Match_columns 267
No_of_seqs 140 out of 937
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 08:15:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024440.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024440hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bbo_H Ribosomal protein L5; l 100.0 3.8E-82 1.3E-86 564.4 15.0 214 47-260 2-215 (220)
2 1iq4_A 50S ribosomal protein L 100.0 1.2E-72 4E-77 490.6 20.3 179 61-239 1-179 (179)
3 1mji_A 50S ribosomal protein L 100.0 2.2E-72 7.4E-77 490.0 20.8 180 60-239 3-182 (182)
4 3r8s_F 50S ribosomal protein L 100.0 1.2E-71 4E-76 483.6 20.2 177 62-238 1-177 (177)
5 3j21_E 50S ribosomal protein L 100.0 4.7E-51 1.6E-55 356.6 15.2 145 70-223 4-148 (186)
6 2zkr_d 60S ribosomal protein L 100.0 3E-51 1E-55 355.8 10.2 153 81-260 7-159 (178)
7 4a17_D L21, RPL11, 60S ribosom 100.0 2.6E-49 9E-54 341.8 13.8 133 82-224 5-137 (172)
8 3iz5_E 60S ribosomal protein L 100.0 5E-49 1.7E-53 342.1 15.5 131 81-221 6-136 (180)
9 1vq8_D 50S ribosomal protein L 100.0 1.2E-48 4.1E-53 339.1 12.4 130 81-221 9-138 (177)
10 2jvf_A De novo protein M7; tet 26.2 54 0.0019 24.6 3.2 22 211-232 47-68 (96)
No 1
>3bbo_H Ribosomal protein L5; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.2
Probab=100.00 E-value=3.8e-82 Score=564.38 Aligned_cols=214 Identities=76% Similarity=1.218 Sum_probs=174.5
Q ss_pred cceeEEeeCCchhhhhhHHHHHHhhhhHHHHhhcCCCCccCCceeeeEEEEecCchhhhChhhHHHHHHHHHHHhCCCcE
Q 024440 47 AGGIVLVEKSEAEKTGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPV 126 (267)
Q Consensus 47 ~~~~~~~~~~~~~~~~rLk~~Y~~~I~~dL~~k~~y~N~m~vPkL~KIvLn~gvg~a~~d~k~L~~a~~~Le~ITGQkPv 126 (267)
+|++|||+++|+++|+||+++|+++|+|+|+++|+|+|+|++|+|+||+||+|+|++.+|++.|+.|+.+|++||||+|+
T Consensus 2 ~~~~~~~~~~~~~~m~rLk~~Y~~~v~~~L~~k~~y~N~m~vPki~KIvin~gvgea~~d~k~L~~A~~~L~~ITGQkPv 81 (220)
T 3bbo_H 2 AGTAVFVDKAEAETINRLKTNYIEKMVPLLKEEFSYSNILEVPKVVKIVVNCGIGDASQNAKGLDAAINELALITGQRPV 81 (220)
T ss_dssp ----------------CHHHHHTTTHHHHHHHSSCCCCSSSSCCEEEEECCCCCCCSSCCHHHHHHHHHHHHHHTCSCCC
T ss_pred CcceEEecccchhhHHHHHHHHHHHHHHHHHHHhcCCCcccCceEEEEEEEcccchhhhchHHHHHHHHHHHHHhCCCcE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeecccCCCCccCCceeeeEEEEchhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcceeeccccccccCcccccCC
Q 024440 127 KTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDAL 206 (267)
Q Consensus 127 ~tkAKksIa~FKiRkG~piG~KVTLRG~~My~FLdKLi~~vLPRirdF~Gi~~~sfD~~GN~sfGIkd~~~FPEIeyD~~ 206 (267)
+|+||++|++||||+||||||+|||||++||+|||||+++||||+|||+|++.++||++|||+|||+||++||||+||++
T Consensus 82 ~tkAKksIa~FkiRkg~pIG~kVTLRG~~MyeFLdrll~iaLPRirdf~Gl~~~sFD~~GN~sfGi~e~~~FPEI~yD~~ 161 (220)
T 3bbo_H 82 KTKAKTSIAGFKVREGMTLGIAVTLRGNLMYSFLDRLINLALPRTRDFQGVNPNSFDGHGNYSVGFREQSVFPEIKPEIV 161 (220)
T ss_dssp CCBCCSCCCSSCCCTTCBCCCCCEECTHHHHHHHHHHHHSSTTTSSSCCCCCCSCCCSSSEEEEEECSCCCCSSCCTTSC
T ss_pred EeecccccccccccCCCeeEEEEEEccHHHHHHHHHHHHHhccccccccccCccccCCCceEEEeccccccCCCcccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeeEEEEeecCChHHHHHHHHhcCCccccCCCCchhHhHHhHhhccCCCc
Q 024440 207 GKPKGIDVCITTTAKTDKEGQRLLALMGMPFREGGGPANLIRKKKLKAHHFDSK 260 (267)
Q Consensus 207 ~~i~GmdItivTtakt~~ea~~LLs~~g~PF~~~~~~~~~~~~~~~~~~~~~~~ 260 (267)
++++||||+|+|+|+||+||++||++|||||.+..+++++.+|||+|+||||+|
T Consensus 162 ~~i~GmdItivTtA~td~ea~~LL~~~g~PF~~~~~~~~~~~~~~~~~~~~~~~ 215 (220)
T 3bbo_H 162 GKARGMDVCITTTAKTDKEAYKLLSLMGMPFREGSGPSTLVRKKKLKSHHFDAK 215 (220)
T ss_dssp SSCCCEEEEEEESCSSGGGTHHHHHTTTCCC-----------------------
T ss_pred CCcccceEEEEeccCCHHHHHHHHHHCCCCEecCCccccchhhcccccCCcchh
Confidence 999999999999999999999999999999999877778889999999999999
No 2
>1iq4_A 50S ribosomal protein L5; rRNA-binding, RNP motif, RNA binding PROT; 1.80A {Geobacillus stearothermophilus} SCOP: d.77.1.1
Probab=100.00 E-value=1.2e-72 Score=490.65 Aligned_cols=179 Identities=58% Similarity=1.023 Sum_probs=177.1
Q ss_pred hhhHHHHHHhhhhHHHHhhcCCCCccCCceeeeEEEEecCchhhhChhhHHHHHHHHHHHhCCCcEEEeeecccCCCCcc
Q 024440 61 TGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIR 140 (267)
Q Consensus 61 ~~rLk~~Y~~~I~~dL~~k~~y~N~m~vPkL~KIvLn~gvg~a~~d~k~L~~a~~~Le~ITGQkPv~tkAKksIa~FKiR 140 (267)
|+||++||+++|+|||+++|+|+|+|++|+|+||+||+|+|++.+|++.|+.|..+|++||||+|++|+||++|++||||
T Consensus 1 m~~l~~~Y~~~i~~~L~~k~~y~n~m~vP~i~KIvin~gvgea~~d~k~l~~a~~~L~~ItGQkpv~tkAkksia~FkiR 80 (179)
T 1iq4_A 1 MNRLKEKYLNEVVPALMSKFNYKSIMQVPKIEKIVINMGVGDAVQNPKALDSAVEELTLIAGQRPVVTRAKKSIAGFRLR 80 (179)
T ss_dssp CCHHHHHHHHTHHHHHHHHHCCSSGGGSCCEEEEEEEEECSCSSSCHHHHHHHHHHHHHHHSSCCEEEECCSCSCSSSCC
T ss_pred CchHHHHHHHHHHHHHHHHhCCCCcccCceeEEEEEEecCchhhcChHHHHHHHHHHHHHhCCCcEEeeccccccccccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeEEEEchhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcceeeccccccccCcccccCCCCCCCeeEEEEeec
Q 024440 141 EGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPKGIDVCITTTA 220 (267)
Q Consensus 141 kG~piG~KVTLRG~~My~FLdKLi~~vLPRirdF~Gi~~~sfD~~GN~sfGIkd~~~FPEIeyD~~~~i~GmdItivTta 220 (267)
+||||||||||||++||+|||||+++||||+|||+|++.++||++|||+|||+||++||||+||++++++||||+|||+|
T Consensus 81 ~g~pIG~kVTLRg~~my~FL~rll~v~lPrirdf~Gl~~~sfd~~GN~sfGi~e~~~FPEi~yD~~~~i~GmdI~ivtta 160 (179)
T 1iq4_A 81 QGMPIGAKVTLRGERMYEFLDKLISVSLPRARDFRGVSKKSFDGRGNYTLGIKEQLIFPEIDYDKVNKVRGMDIVIVTTA 160 (179)
T ss_dssp TTCEEEEEEEECHHHHHHHHHHHHHTTGGGSTTCCCBCSSCBCSSSEEEEEESCGGGSTTCCGGGSSCCCCEEEEEEESC
T ss_pred CCCeeEEEEEEccHHHHHHHHHHHHHhcccccccccCCccccCCCceEEEecchhhcCccccccccCCccCceEEEEeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHhcCCcccc
Q 024440 221 KTDKEGQRLLALMGMPFRE 239 (267)
Q Consensus 221 kt~~ea~~LLs~~g~PF~~ 239 (267)
+||+||++||++|||||.+
T Consensus 161 ~td~ea~~LL~~~g~Pf~~ 179 (179)
T 1iq4_A 161 NTDEEARELLALLGMPFQK 179 (179)
T ss_dssp SSHHHHHHHHHHHTCCBCC
T ss_pred CCHHHHHHHHHHcCCccCC
Confidence 9999999999999999974
No 3
>1mji_A 50S ribosomal protein L5; ribosomal protein - 5S rRNA complex, ribosome; 2.50A {Thermus thermophilus} SCOP: d.77.1.1 PDB: 2hgj_G 2hgq_G 2hgu_G 2j01_G 2j03_G 2jl6_G 2jl8_G 2v47_G 2v49_G 2wdi_G 2wdj_G 2wdl_G 2wdn_G 2wh2_G 2wh4_G 2wrj_G 2wrl_G 2wro_G 2wrr_G 2x9s_G ...
Probab=100.00 E-value=2.2e-72 Score=490.03 Aligned_cols=180 Identities=51% Similarity=0.936 Sum_probs=177.8
Q ss_pred hhhhHHHHHHhhhhHHHHhhcCCCCccCCceeeeEEEEecCchhhhChhhHHHHHHHHHHHhCCCcEEEeeecccCCCCc
Q 024440 60 KTGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKI 139 (267)
Q Consensus 60 ~~~rLk~~Y~~~I~~dL~~k~~y~N~m~vPkL~KIvLn~gvg~a~~d~k~L~~a~~~Le~ITGQkPv~tkAKksIa~FKi 139 (267)
+|+||++||+++|+|||+++|+|+|+|++|+|+||+||+|+|++.+|++.|+.|..+|++||||+|++|+||++|++|||
T Consensus 3 ~~~~l~~~Y~~~i~~~L~~kf~y~n~m~vP~i~KIvin~gvgea~~d~k~l~~a~~~L~~ItGQkpv~tkAkksia~Fki 82 (182)
T 1mji_A 3 LDVALKRKYYEEVRPELIRRFGYQNVWEVPRLEKVVINQGLGEAKEDARILEKAAQELALITGQKPAVTRAKKSISNFKL 82 (182)
T ss_dssp CCCHHHHHHHHTHHHHHHHHSCCSSGGGSCCEEEEEEEEECTTTCCCHHHHHHHHHHHHHHHTSCCEEEECCSCCCCSSS
T ss_pred ccHHHHHHHHHHHHHHHHHHhCCCCcccCceeeEEEEEcCCchhhhChHHHHHHHHHHHHHhCCCcEEeecccccccccc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeeeEEEEchhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcceeeccccccccCcccccCCCCCCCeeEEEEee
Q 024440 140 REGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPKGIDVCITTT 219 (267)
Q Consensus 140 RkG~piG~KVTLRG~~My~FLdKLi~~vLPRirdF~Gi~~~sfD~~GN~sfGIkd~~~FPEIeyD~~~~i~GmdItivTt 219 (267)
|+|+||||||||||++||+|||||+++||||+|||+|++.++||++|||+|||+||++||||+||++++++||||+|||+
T Consensus 83 R~g~pIG~kVTLRg~~my~FL~rll~v~lPrirdf~Gl~~~sfd~~GN~sfGi~e~~~FPEi~yD~~~~i~GmdItivtt 162 (182)
T 1mji_A 83 RKGMPIGLRVTLRRDRMWIFLEKLLNVALPRIRDFRGLNPNSFDGRGNYNLGLREQLIFPEITYDMVDALRGMDIAVVTT 162 (182)
T ss_dssp SCCSEEEEEEEECHHHHHHHHHHHHHTTTTTCSSCCCBCTTCBCSSSEEEEEECSCEECSSCEECCTTTSCCEEEEEEES
T ss_pred cCCCeeEEEEEEccHHHHHHHHHHHHHhccccccccccCccccCCCceEEEecchhhcCCcccccccCCccCceEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHhcCCcccc
Q 024440 220 AKTDKEGQRLLALMGMPFRE 239 (267)
Q Consensus 220 akt~~ea~~LLs~~g~PF~~ 239 (267)
|+||+||++||++|||||.+
T Consensus 163 a~td~ea~~LL~~~g~Pf~~ 182 (182)
T 1mji_A 163 AETDEEARALLELLGFPFRK 182 (182)
T ss_dssp CSSHHHHHHHHHHHTCCBCC
T ss_pred cCCHHHHHHHHHHcCCccCC
Confidence 99999999999999999974
No 4
>3r8s_F 50S ribosomal protein L5; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_F* 3oat_F* 3ofc_F* 3ofz_F* 3ofr_F 3r8t_F 3i1n_F 1vs8_F 1vs6_F 1vt2_F 3i1p_F 3i1r_F 3i1t_F 3i20_F 3i22_F 3iyx_F 3iyy_F 3izt_G* 3izu_G* 3kcr_F ...
Probab=100.00 E-value=1.2e-71 Score=483.57 Aligned_cols=177 Identities=51% Similarity=0.920 Sum_probs=175.1
Q ss_pred hhHHHHHHhhhhHHHHhhcCCCCccCCceeeeEEEEecCchhhhChhhHHHHHHHHHHHhCCCcEEEeeecccCCCCccC
Q 024440 62 GRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIRE 141 (267)
Q Consensus 62 ~rLk~~Y~~~I~~dL~~k~~y~N~m~vPkL~KIvLn~gvg~a~~d~k~L~~a~~~Le~ITGQkPv~tkAKksIa~FKiRk 141 (267)
+||++||+++|+|+|+++|+|+|+|++|+|+||+||+|+|++.+|++.|+.|..+|++||||+|++|+||++|++||||+
T Consensus 1 ~~l~~~Y~~~v~~~L~~~~~y~N~m~vP~i~KIvln~gvgea~~d~k~l~~a~~~L~~ItGQkpv~tkAkksi~~FkiR~ 80 (177)
T 3r8s_F 1 AKLHDYYKDEVVKKLMTEFNYNSVMQVPRVEKITLNMGVGEAIADKKLLDNAAADLAAISGQKPLITKARKSVAGFKIRQ 80 (177)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCSSTTSSCCEEEEEEBCCCCCTTSCHHHHHHHHHHHHHHSSSCCEEEECSSCBGGGTBCT
T ss_pred CchHHHHHHHHHHHHHHhhCCCCccccceeeEEEEEecCchhhhCHHHHHHHHHHHHHhhCCCceEeecccccccCCCCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeeEEEEchhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcceeeccccccccCcccccCCCCCCCeeEEEEeecC
Q 024440 142 GEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPKGIDVCITTTAK 221 (267)
Q Consensus 142 G~piG~KVTLRG~~My~FLdKLi~~vLPRirdF~Gi~~~sfD~~GN~sfGIkd~~~FPEIeyD~~~~i~GmdItivTtak 221 (267)
||||||||||||++||+|||||+++||||+|||+|++.++||++|||+|||+|+++||||+||++++++||||+|||||+
T Consensus 81 g~piG~kVTLRg~~m~~FL~kli~~vlPrirdf~Gl~~~sfd~~GN~~fGi~e~~~FPEi~yD~~~~i~GmdI~ivtta~ 160 (177)
T 3r8s_F 81 GYPIGCKVTLRGERMWEFFERLITIAVPRIRDFRGLSAKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRGLDITITTTAK 160 (177)
T ss_dssp TCEEEEEEEECSHHHHHHHHHHHHTTTTTSTTCCCCCTTCBCSSSCEECCCSCGGGSSSSCSSSCCSCCCCBCEEEESCS
T ss_pred CCEeeEEEEEccHHHHHHHHHHHHHhccccccccccCccccCCCceEeeeccccccCCCccccccCCccceeEEEEeCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHhcCCccc
Q 024440 222 TDKEGQRLLALMGMPFR 238 (267)
Q Consensus 222 t~~ea~~LLs~~g~PF~ 238 (267)
||+||++||++|||||.
T Consensus 161 td~ea~~LL~~~g~Pf~ 177 (177)
T 3r8s_F 161 SDEEGRALLAAFDFPFR 177 (177)
T ss_dssp SHHHHHHHHHHTCCCCC
T ss_pred CHHHHHHHHHHcCCCcC
Confidence 99999999999999995
No 5
>3j21_E 50S ribosomal protein L5P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=4.7e-51 Score=356.58 Aligned_cols=145 Identities=33% Similarity=0.514 Sum_probs=138.2
Q ss_pred hhhhHHHHhhcCCCCccCCceeeeEEEEecCchhhhChhhHHHHHHHHHHHhCCCcEEEeeecccCCCCccCCceeeeEE
Q 024440 70 EKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAV 149 (267)
Q Consensus 70 ~~I~~dL~~k~~y~N~m~vPkL~KIvLn~gvg~a~~d~k~L~~a~~~Le~ITGQkPv~tkAKksIa~FKiRkG~piG~KV 149 (267)
+.-++|++++.+++|+|++|+|+||+||+|+|++.+. |..|..+|++||||+|++|+||++|++||||+||||||+|
T Consensus 4 ~~~~~~~iL~~~~~N~m~vPkI~KIvlN~gvgea~~~---L~~a~~~Le~ITGQkPv~tkAKksia~FkiRkg~pIG~kV 80 (186)
T 3j21_E 4 EIPNKEQILADWEAHPMRRPRIEKVTINIGVGESGER---LTKAEIMLQQLTGQKPIRRKAKKTNRDFGIRRGEPIAVKV 80 (186)
T ss_dssp HHHHHHHHHHHHHHCTTSSCEEEEEEEEECSCCCTTS---CCSHHHHHHHHHSSCCEEECCCSCCSSSCCSTTCCCEEEE
T ss_pred ccccHHHHHhhccCCchhccEeeEEEEEcCcchHHHH---HHHHHHHHHHhhCCCcEEEEccccccccCcCCCCceeeEE
Confidence 4457899999999999999999999999999999864 8999999999999999999999999999999999999999
Q ss_pred EEchhhHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcceeeccccccccCcccccCCCCCCCeeEEEEeecCCh
Q 024440 150 TLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPKGIDVCITTTAKTD 223 (267)
Q Consensus 150 TLRG~~My~FLdKLi~~vLPRirdF~Gi~~~sfD~~GN~sfGIkd~~~FPEIeyD~~~~i~GmdItivTtakt~ 223 (267)
||||++||+||+||++++ || |++.++||++|||+|||+||++||||+||++++++||||+|+|.++-.
T Consensus 81 TLRG~~myeFL~rll~v~-----d~-gl~~~sFD~~GN~sfGi~E~i~FPeI~yD~~~~i~GmdI~ivt~rpG~ 148 (186)
T 3j21_E 81 TLRGPKAYELLKRLLAAV-----DN-RLKASSFDEHGNVCFGIEEHINIPGVEYDPEIGIFGMDVCVTLERPGF 148 (186)
T ss_dssp EECSHHHHHHHHHHHHHS-----CS-SBCSSSBCTTSCEEECCCSCCCCTTTSSCSSCCCCCCEEEEEEECSTT
T ss_pred EEcChhHHHHHHHHHHHh-----cc-CCCccccCCCceEEEcCcceeecccccccccccccceeEEEEecCCcc
Confidence 999999999999999997 77 899999999999999999999999999999999999999999998743
No 6
>2zkr_d 60S ribosomal protein L11; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=3e-51 Score=355.83 Aligned_cols=153 Identities=27% Similarity=0.457 Sum_probs=141.0
Q ss_pred CCCCccCCceeeeEEEEecCchhhhChhhHHHHHHHHHHHhCCCcEEEeeecccCCCCccCCceeeeEEEEchhhHHHHH
Q 024440 81 SYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFL 160 (267)
Q Consensus 81 ~y~N~m~vPkL~KIvLn~gvg~a~~d~k~L~~a~~~Le~ITGQkPv~tkAKksIa~FKiRkG~piG~KVTLRG~~My~FL 160 (267)
..+|+|++|+|+||+||+|+|++. +.|+.|..+|++||||+|++|+||+||++||||+||||||+|||||++||+||
T Consensus 7 ~~~n~m~vPki~KIvln~gvgea~---~~L~~a~~~L~~ITGQkPv~tkAKksia~FkiR~g~pIG~kVTLRG~~myeFL 83 (178)
T 2zkr_d 7 EKENPMRELRIRKLCLNICVGESG---DRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEIL 83 (178)
T ss_dssp ---CTTTSCEEEEEEEEECCSSSC---SSSCTTHHHHHHHHSSCCEEECCCSCCSSSCCCSSSCCEEEEEECHHHHHHHH
T ss_pred ccCCcccccEEEEEEEECCchhHH---HHHHHHHHHHHHHhCCCeEEEecccccccccccCCCEEEEEEEEccHHHHHHH
Confidence 358999999999999999999985 45999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCCCCCCCCCCCCCcceeeccccccccCcccccCCCCCCCeeEEEEeecCChHHHHHHHHhcCCccccC
Q 024440 161 DRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPKGIDVCITTTAKTDKEGQRLLALMGMPFREG 240 (267)
Q Consensus 161 dKLi~~vLPRirdF~Gi~~~sfD~~GN~sfGIkd~~~FPEIeyD~~~~i~GmdItivTtakt~~ea~~LLs~~g~PF~~~ 240 (267)
|||++ +|||+ ++.++||++|||+|||+||++| ||+||++++++||||+|+ |+.+|+||.++
T Consensus 84 ~rll~-----vrdf~-l~~~sfd~~GN~sfGi~E~i~F-Ei~yD~~~~i~GmdItiv------------L~~~G~pf~~r 144 (178)
T 2zkr_d 84 EKGLK-----VREYE-LRKNNFSDTGNFGFGIQEHIDL-GIKYDPSIGIYGLDFYVV------------LGRPGFSIADK 144 (178)
T ss_dssp HHHHH-----HSCSC-BCTTTBCTTSCEEESSSSCSSS-SCCCSSSCCSSCEEEEEE------------EECTTTHHHHS
T ss_pred HHHHh-----hcccc-ccccCcCCCceEEEecchheee-eeeecccCCccCccEEEE------------EcCCCcEEeec
Confidence 99998 59999 9999999999999999999999 999999999999999999 89999999986
Q ss_pred CCCchhHhHHhHhhccCCCc
Q 024440 241 GGPANLIRKKKLKAHHFDSK 260 (267)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~ 260 (267)
. ++++++-++|.-+|
T Consensus 145 ~-----~~~~~i~~~hr~~k 159 (178)
T 2zkr_d 145 K-----RRTGCIGAKHRISK 159 (178)
T ss_dssp S-----SSCCCCCTTTSCCH
T ss_pred c-----cccccCCCCceECH
Confidence 4 56667777776654
No 7
>4a17_D L21, RPL11, 60S ribosomal protein L11; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_D 4a1c_D 4a1e_D
Probab=100.00 E-value=2.6e-49 Score=341.80 Aligned_cols=133 Identities=28% Similarity=0.525 Sum_probs=127.3
Q ss_pred CCCccCCceeeeEEEEecCchhhhChhhHHHHHHHHHHHhCCCcEEEeeecccCCCCccCCceeeeEEEEchhhHHHHHH
Q 024440 82 YTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLD 161 (267)
Q Consensus 82 y~N~m~vPkL~KIvLn~gvg~a~~d~k~L~~a~~~Le~ITGQkPv~tkAKksIa~FKiRkG~piG~KVTLRG~~My~FLd 161 (267)
-+|+|++|+|+|||||+|+|++.+ .|+.|..+|++||||+|++|+||++|++||||+||||||||||||++||+|||
T Consensus 5 ~~n~m~vPkI~KIvlN~gvgea~~---~L~~A~~~L~~ITGQkPv~tkAKksi~~FkiR~g~pIG~kVTLRG~~m~eFL~ 81 (172)
T 4a17_D 5 KENKMREVKIAKLVINCCVGESGD---KLTKAAKVLKDLSGQEPVFSRARYTIRSFGIKRNEKMAVHVTIRGDKARDILT 81 (172)
T ss_dssp CCCGGGCCEEEEEEEEEECCCSSH---HHHHHHHHHHHHHSSCCEEEEECSCBTTTTBCSSEEEEEEEEECHHHHHHHHH
T ss_pred cCCcccCcEEEEEEEEcCcHHHHH---HHHHHHHHHHHccCCccEEEEeccccccccccCCCEEEEEEEEccHHHHHHHH
Confidence 479999999999999999999974 49999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCCCCCCCCCCCCcceeeccccccccCcccccCCCCCCCeeEEEEeecCChH
Q 024440 162 RLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPKGIDVCITTTAKTDK 224 (267)
Q Consensus 162 KLi~~vLPRirdF~Gi~~~sfD~~GN~sfGIkd~~~FPEIeyD~~~~i~GmdItivTtakt~~ 224 (267)
||+ |+|||+ ++.++||++|||+|||+||++| ||+||++++++||||+|+|+++-..
T Consensus 82 kll-----rirdf~-l~~~sFD~~GN~sfGi~e~i~F-ei~yD~~~~i~GmdI~ivt~rpG~r 137 (172)
T 4a17_D 82 RGL-----KVKEME-LRKKNFSNTGNFGFGIQEHIDL-GMKYDPSTGIFGMDFYVVLERPGTR 137 (172)
T ss_dssp HHH-----HHTTTE-ECGGGBCTTSCEEEEECCGGGG-TCCCCGGGCCCCEEEEEEEECGGGH
T ss_pred HHH-----hhhhcc-CCCcCcCCCceEEEcccccccc-ccccccccCccceeEEEEEcCCccc
Confidence 999 889999 9999999999999999999999 9999999999999999999976433
No 8
>3iz5_E 60S ribosomal protein L11 (L5P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_E 3izc_E 3izs_E 3o58_K 3o5h_K 3u5e_J 3u5i_J 4b6a_J 1s1i_J 2noq_H 3j0q_k 3jyw_J
Probab=100.00 E-value=5e-49 Score=342.07 Aligned_cols=131 Identities=24% Similarity=0.465 Sum_probs=126.3
Q ss_pred CCCCccCCceeeeEEEEecCchhhhChhhHHHHHHHHHHHhCCCcEEEeeecccCCCCccCCceeeeEEEEchhhHHHHH
Q 024440 81 SYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFL 160 (267)
Q Consensus 81 ~y~N~m~vPkL~KIvLn~gvg~a~~d~k~L~~a~~~Le~ITGQkPv~tkAKksIa~FKiRkG~piG~KVTLRG~~My~FL 160 (267)
..+|+|++|+|+|||||+|+|++.+ .|+.|..+|++||||+|++|+||++|++||||+||||||||||||++||+||
T Consensus 6 ~~~n~m~vPkI~KIvlN~gvGea~~---~L~~A~~~L~~ITGQkPv~tkAKksia~FkiR~g~pIG~kVTLRG~~m~eFL 82 (180)
T 3iz5_E 6 KQLNPMRDIKVQKLVLNISVGESGD---RLTRASKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACYVTIRGEKAMQLL 82 (180)
T ss_dssp TTCCTTSSCEEEEEEEEEECCTTTS---CSSTHHHHHHHHHSSCCEEECCCSCCSSSCCCSSSCCEEEEEECHHHHHHHH
T ss_pred ccCCCccCcEEEEEEEEcCCchhHH---HHHHHHHHHHHhcCCceEEEEcccccccccccCCCEEEEEEEEccHHHHHHH
Confidence 3579999999999999999999954 3999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCCCCCCCCCCCCCcceeeccccccccCcccccCCCCCCCeeEEEEeecC
Q 024440 161 DRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPKGIDVCITTTAK 221 (267)
Q Consensus 161 dKLi~~vLPRirdF~Gi~~~sfD~~GN~sfGIkd~~~FPEIeyD~~~~i~GmdItivTtak 221 (267)
|||+ |+|||+ ++.++||++|||+|||+||++| ||+||++++++||||+|+|.++
T Consensus 83 ~kli-----rirdf~-l~~~sFD~~GN~sfGI~E~i~F-ei~yD~~~~i~GmdI~ivt~Rp 136 (180)
T 3iz5_E 83 ESGL-----KVKEYE-LLRRNFSDTGCFGFGIQEHIDL-GMKYDPSTGIYGMDFFVVLERA 136 (180)
T ss_dssp HHHH-----HSSCSC-CCSTTBCTTSCEEEECCTTSSS-CCSSSCSCCCCCCEEEEEEECG
T ss_pred HHHH-----hhhhcc-cCccccCCCceeeeccchheee-ecccccccCccceeEEEEEcCC
Confidence 9999 899999 9999999999999999999999 9999999999999999999876
No 9
>1vq8_D 50S ribosomal protein L5P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.77.1.1 PDB: 1vq4_D* 1vq5_D* 1vq6_D* 1vq7_D* 1s72_D* 1vq9_D* 1vqk_D* 1vql_D* 1vqm_D* 1vqn_D* 1vqo_D* 1vqp_D* 1yhq_D* 1yi2_D* 1yij_D* 1yit_D* 1yj9_D* 1yjn_D* 1yjw_D* 2otj_D* ...
Probab=100.00 E-value=1.2e-48 Score=339.15 Aligned_cols=130 Identities=38% Similarity=0.635 Sum_probs=100.8
Q ss_pred CCCCccCCceeeeEEEEecCchhhhChhhHHHHHHHHHHHhCCCcEEEeeecccCCCCccCCceeeeEEEEchhhHHHHH
Q 024440 81 SYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFL 160 (267)
Q Consensus 81 ~y~N~m~vPkL~KIvLn~gvg~a~~d~k~L~~a~~~Le~ITGQkPv~tkAKksIa~FKiRkG~piG~KVTLRG~~My~FL 160 (267)
..+|+|++|+|+||+||+|+|++. +.|+.|..+|++||||+|++|+||++|++||||+||||||+|||||++||+||
T Consensus 9 ~~~N~m~vPki~KIvln~gvgea~---~~L~~a~~~L~~ITGQkPv~tkAKksia~FkiRkg~pIG~kVTLRG~~myeFL 85 (177)
T 1vq8_D 9 GDFHEMREPRIEKVVVHMGIGHGG---RDLANAEDILGEITGQMPVRTKAKRTVGEFDIREGDPIGAKVTLRDEMAEEFL 85 (177)
T ss_dssp --CCTTTSCEEEEEEEEEECCC--------CTTHHHHHHHTSSCCEEEECCSCBTTTBCCSSSEEEEEEEECTHHHHHHH
T ss_pred ccCCchhcCEEEEEEEEcCcchHH---HHHHHHHHHHHHHhCCCcEEEecccccccccccCCCeeEEEEEEccHHHHHHH
Confidence 358999999999999999999986 45999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCCCCCCCCCCCCCcceeeccccccccCcccccCCCCCCCeeEEEEeecC
Q 024440 161 DRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYDALGKPKGIDVCITTTAK 221 (267)
Q Consensus 161 dKLi~~vLPRirdF~Gi~~~sfD~~GN~sfGIkd~~~FPEIeyD~~~~i~GmdItivTtak 221 (267)
+||+ |+|| ++.++||++|||+|||+||++||||+||++++++||||+|+|+++
T Consensus 86 ~rll-----rvrd---l~~~sfd~~GN~sfGi~e~i~FPEI~yD~~~~i~GmdI~ivt~rp 138 (177)
T 1vq8_D 86 QTAL-----PLAE---LATSQFDDTGNFSFGVEEHTEFPSQEYDPSIGIYGLDVTVNLVRP 138 (177)
T ss_dssp HHHG-----GGSC---CCGGGBCSSSCEEEC--------------------CEEEEEEECG
T ss_pred HHHH-----Hhcc---CCccccCCCceEEEecceeecCccccccccCCcccceEEEEeCCC
Confidence 9999 7888 899999999999999999999999999999999999999999986
No 10
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=26.19 E-value=54 Score=24.65 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=18.3
Q ss_pred CeeEEEEeecCChHHHHHHHHh
Q 024440 211 GIDVCITTTAKTDKEGQRLLAL 232 (267)
Q Consensus 211 GmdItivTtakt~~ea~~LLs~ 232 (267)
.-||.|..+|.+|++|+.||..
T Consensus 47 arnvqitisaendeqakellel 68 (96)
T 2jvf_A 47 ARNVQITISAENDEQAKELLEL 68 (96)
T ss_dssp CSEEEEEEECSSHHHHHHHHHH
T ss_pred ccceEEEEEecChHHHHHHHHH
Confidence 3488899999999999888764
Done!