RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 024440
(267 letters)
>d1mjia_ d.77.1.1 (A:) Ribosomal protein L5 {Thermus thermophilus
[TaxId: 274]}
Length = 180
Score = 221 bits (564), Expect = 8e-74
Identities = 91/177 (51%), Positives = 135/177 (76%)
Query: 63 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITG 122
LK Y E++ P L F Y N+ +VP++EK+V+N G+G+A ++A+ LE A +LALITG
Sbjct: 4 ALKRKYYEEVRPELIRRFGYQNVWEVPRLEKVVINQGLGEAKEDARILEKAAQELALITG 63
Query: 123 QRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSF 182
Q+P TRA+ SI+ FK+R+G P+G+ VTLR + M+ FL++L+N+ LPR RDF+G+NPNSF
Sbjct: 64 QKPAVTRAKKSISNFKLRKGMPIGLRVTLRRDRMWIFLEKLLNVALPRIRDFRGLNPNSF 123
Query: 183 DGHGNYSIGVKEQSVFPEIRYDALGKPKGIDVCITTTAKTDKEGQRLLALMGMPFRE 239
DG GNY++G++EQ +FPEI YD + +G+D+ + TTA+TD+E + LL L+G PFR+
Sbjct: 124 DGRGNYNLGLREQLIFPEITYDMVDALRGMDIAVVTTAETDEEARALLELLGFPFRK 180
>d1iq4a_ d.77.1.1 (A:) Ribosomal protein L5 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 179
Score = 219 bits (560), Expect = 3e-73
Identities = 104/177 (58%), Positives = 138/177 (77%)
Query: 63 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITG 122
RLK YL ++VP L +F+Y +I QVPKIEKIV+N G+GDA QN K L++A+ +L LI G
Sbjct: 3 RLKEKYLNEVVPALMSKFNYKSIMQVPKIEKIVINMGVGDAVQNPKALDSAVEELTLIAG 62
Query: 123 QRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSF 182
QRPV TRA+ SIA F++R+G P+G VTLRG MY FLD+LI++ LPR RDF+GV+ SF
Sbjct: 63 QRPVVTRAKKSIAGFRLRQGMPIGAKVTLRGERMYEFLDKLISVSLPRARDFRGVSKKSF 122
Query: 183 DGHGNYSIGVKEQSVFPEIRYDALGKPKGIDVCITTTAKTDKEGQRLLALMGMPFRE 239
DG GNY++G+KEQ +FPEI YD + K +G+D+ I TTA TD+E + LLAL+GMPF++
Sbjct: 123 DGRGNYTLGIKEQLIFPEIDYDKVNKVRGMDIVIVTTANTDEEARELLALLGMPFQK 179
>d2zjrd1 d.77.1.1 (D:3-179) Ribosomal protein L5 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 177
Score = 215 bits (548), Expect = 2e-71
Identities = 96/177 (54%), Positives = 140/177 (79%)
Query: 63 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITG 122
+LKT Y +++ P L ++F Y+++ VP+IEKIVVN G+G + +++K ++ A +LALIT
Sbjct: 1 QLKTKYNDQVRPALMQQFGYSSVMAVPRIEKIVVNEGLGSSKEDSKAIDKAAKELALITL 60
Query: 123 QRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSF 182
Q+P+ T+A+ SI+ FK+R+G P+GI VTLRG MY FL++LIN+GLPR RDF+G+NPN+F
Sbjct: 61 QKPIITKAKKSISNFKLRQGMPVGIKVTLRGERMYVFLEKLINIGLPRIRDFRGINPNAF 120
Query: 183 DGHGNYSIGVKEQSVFPEIRYDALGKPKGIDVCITTTAKTDKEGQRLLALMGMPFRE 239
DG GNY++G+KEQ +FPEI YD + K +G+D+ I TTAKTD+E + LL MG+PFR+
Sbjct: 121 DGRGNYNLGIKEQLIFPEITYDMVDKTRGMDITIVTTAKTDEEARALLQSMGLPFRK 177
>d2gycd1 d.77.1.1 (D:2-178) Ribosomal protein L5 {Escherichia coli
[TaxId: 562]}
Length = 177
Score = 207 bits (529), Expect = 1e-68
Identities = 90/177 (50%), Positives = 130/177 (73%)
Query: 63 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITG 122
+L Y +++V L EF+Y ++ QVP++EKI +N G+G+A + K L+ A DLA I+G
Sbjct: 1 KLHDYYKDEVVKKLMTEFNYNSVMQVPRVEKITLNMGVGEAIADKKLLDNAAADLAAISG 60
Query: 123 QRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSF 182
Q+P+ T+AR S+A FKIR+G P+G VTLRG M+ F +RLI + +PR RDF+G++ SF
Sbjct: 61 QKPLITKARKSVAGFKIRQGYPIGCKVTLRGERMWEFFERLITIAVPRIRDFRGLSAKSF 120
Query: 183 DGHGNYSIGVKEQSVFPEIRYDALGKPKGIDVCITTTAKTDKEGQRLLALMGMPFRE 239
DG GNYS+GV+EQ +FPEI YD + + +G+D+ ITTTAK+D+EG+ LLA PFR+
Sbjct: 121 DGRGNYSMGVREQIIFPEIDYDKVDRVRGLDITITTTAKSDEEGRALLAAFDFPFRK 177
>d1vqod1 d.77.1.1 (D:10-174) Ribosomal protein L5 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 165
Score = 152 bits (385), Expect = 6e-47
Identities = 53/155 (34%), Positives = 79/155 (50%), Gaps = 11/155 (7%)
Query: 84 NIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGE 143
+ + P+IEK+VV+ GIG ++ L A + L ITGQ PV+T+A+ ++ F IREG+
Sbjct: 2 HEMREPRIEKVVVHMGIGHGGRD---LANAEDILGEITGQMPVRTKAKRTVGEFDIREGD 58
Query: 144 PLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRY 203
P+G VTLR M FL + L + FD GN+S GV+E + FP Y
Sbjct: 59 PIGAKVTLRDEMAEEFLQTALPLAEL--------ATSQFDDTGNFSFGVEEHTEFPSQEY 110
Query: 204 DALGKPKGIDVCITTTAKTDKEGQRLLALMGMPFR 238
D G+DV + + +R A +P +
Sbjct: 111 DPSIGIYGLDVTVNLVRPGYRVAKRDKASRSIPTK 145
>d2pi0a1 a.4.5.23 (A:5-110) Interferon regulatory factor 3, IRF-3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 106
Score = 26.6 bits (59), Expect = 1.5
Identities = 11/58 (18%), Positives = 16/58 (27%), Gaps = 9/58 (15%)
Query: 133 SIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSI 190
+ AT G T + N + L R + S D H + I
Sbjct: 54 AEATGAYVPGRDKPDLPTWKRNFRSA---------LNRKEGLRLAEDRSKDPHDPHKI 102
>d2co7b1 b.1.11.1 (B:8-135) Periplasmic chaperone SafB {Salmonella
typhimurium [TaxId: 90371]}
Length = 128
Score = 24.5 bits (53), Expect = 8.8
Identities = 9/39 (23%), Positives = 16/39 (41%)
Query: 55 KSEAEKTGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEK 93
+ EA + +L+ +P RE + I VP +
Sbjct: 60 RLEANQQSQLRIVRTGGDMPTDRETLQWVCIKAVPPENE 98
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.135 0.387
Gapped
Lambda K H
0.267 0.0572 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 975,299
Number of extensions: 45065
Number of successful extensions: 79
Number of sequences better than 10.0: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 7
Length of query: 267
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 183
Effective length of database: 1,254,276
Effective search space: 229532508
Effective search space used: 229532508
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.2 bits)