BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024441
(267 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3,
Nmr, 32 Structures
Length = 110
Score = 107 bits (266), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 52/104 (50%), Positives = 71/104 (68%), Gaps = 3/104 (2%)
Query: 14 KGPWTAEEDKKLINFILTNGQCCWRAVPK-LAGLRRCGKSCRLRWTNYLRPDLKRGLLTE 72
KGPWT EED+K+I + G W + K L G R GK CR RW N+L P++K+ TE
Sbjct: 7 KGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKG--RLGKQCRERWHNHLNPEVKKSSWTE 64
Query: 73 AEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKL 116
E++++ + H LGNRW++IA LPGRTDN +KNHWN+ IK+K+
Sbjct: 65 EEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKV 108
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 63 PDLKRGLLTEAEEQLVIDLHARLGNR-WSKIAARLPGRTDNEIKNHWNTHI 112
PDL +G T+ E+Q VI+L + G + W+ IA L GR + + W+ H+
Sbjct: 3 PDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHL 53
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1
pdb|1H89|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex2
Length = 159
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/104 (49%), Positives = 71/104 (68%), Gaps = 3/104 (2%)
Query: 14 KGPWTAEEDKKLINFILTNGQCCWRAVPK-LAGLRRCGKSCRLRWTNYLRPDLKRGLLTE 72
KGPWT EED+++I + G W + K L G R GK CR RW N+L P++K+ TE
Sbjct: 58 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPEVKKTSWTE 115
Query: 73 AEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKL 116
E++++ H RLGNRW++IA LPGRTDN IKNHWN+ +++K+
Sbjct: 116 EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3
Length = 105
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/104 (49%), Positives = 71/104 (68%), Gaps = 3/104 (2%)
Query: 14 KGPWTAEEDKKLINFILTNGQCCWRAVPK-LAGLRRCGKSCRLRWTNYLRPDLKRGLLTE 72
KGPWT EED+++I + G W + K L G R GK CR RW N+L P++K+ TE
Sbjct: 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPEVKKTSWTE 61
Query: 73 AEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKL 116
E++++ H RLGNRW++IA LPGRTDN IKNHWN+ +++K+
Sbjct: 62 EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
Score = 34.7 bits (78), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 64 DLKRGLLTEAEEQLVIDLHARLG-NRWSKIAARLPGRTDNEIKNHWNTHI 112
+L +G T+ E+Q VI L + G RWS IA L GR + + W+ H+
Sbjct: 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 50
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
pdb|1MSF|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
Length = 105
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/104 (49%), Positives = 71/104 (68%), Gaps = 3/104 (2%)
Query: 14 KGPWTAEEDKKLINFILTNGQCCWRAVPK-LAGLRRCGKSCRLRWTNYLRPDLKRGLLTE 72
KGPWT EED+++I + G W + K L G R GK CR RW N+L P++K+ TE
Sbjct: 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPEVKKTSWTE 61
Query: 73 AEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKL 116
E++++ H RLGNRW++IA LPGRTDN IKNHWN+ +++K+
Sbjct: 62 EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
Score = 33.9 bits (76), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 65 LKRGLLTEAEEQLVIDLHARLG-NRWSKIAARLPGRTDNEIKNHWNTHI 112
L +G T+ E+Q VI L + G RWS IA L GR + + W+ H+
Sbjct: 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 50
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3
Length = 128
Score = 104 bits (260), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 50/104 (48%), Positives = 71/104 (68%), Gaps = 3/104 (2%)
Query: 14 KGPWTAEEDKKLINFILTNGQCCWRAVPK-LAGLRRCGKSCRLRWTNYLRPDLKRGLLTE 72
KGPWT EED+++I + G W + K L G R GK CR RW N+L P++K+ TE
Sbjct: 27 KGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG--RIGKQCRERWHNHLNPEVKKTSWTE 84
Query: 73 AEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKL 116
E++++ H RLGNRW++IA LPGRTDN +KNHWN+ +++K+
Sbjct: 85 EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 48 RCGKSCRLRWTNYLRPDLKRGLLTEAEEQLVIDLHARLG-NRWSKIAARLPGRTDNEIKN 106
R C+ RW L P+L +G T+ E+Q VI+ + G RWS IA L GR + +
Sbjct: 8 RTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRE 67
Query: 107 HWNTHI 112
W+ H+
Sbjct: 68 RWHNHL 73
>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|D Chain D, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|G Chain G, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|J Chain J, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
Length = 131
Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 72/138 (52%), Gaps = 18/138 (13%)
Query: 14 KGPWTAEEDKKLINFILTNGQCCWRAVPKLAGL--RRCGKSCRLRWTNYLRPDLKRGLLT 71
KGP+T ED + ++ NG W P++ R K CR RW N+L P + + T
Sbjct: 2 KGPFTEAEDDLIREYVKENGPQNW---PRITSFLPNRSPKQCRERWFNHLDPAVVKHAWT 58
Query: 72 EAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKLLKMGIDPVTHEPLHK 131
E++ + + +LG++WS IA +PGRTDN IKN WN+ I K+ ++ HK
Sbjct: 59 PEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKR--------ISTNSNHK 110
Query: 132 ETKAEDNLPPDSSNQQKA 149
E L PD S ++KA
Sbjct: 111 EI-----LLPDRSKKRKA 123
>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
pdb|1MBK|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
Length = 53
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 40/52 (76%)
Query: 65 LKRGLLTEAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKL 116
+K+ TE E++++ H RLGNRW++IA LPGRTDN IKNHWN+ +++K+
Sbjct: 1 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 52
>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized
Average Structure
pdb|1IDZ|A Chain A, Structure Of Myb Transforming Protein, Nmr, 20 Structures
Length = 54
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 41/53 (77%)
Query: 64 DLKRGLLTEAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKL 116
++K+ TE E++++ H RLGNRW++IA LPGRTDN IKNHWN+ +++K+
Sbjct: 2 EVKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 54
>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of
Myb1 Protein From Protozoan Parasite Trichomonas
Vaginalis
pdb|2KDZ|A Chain A, Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein
From Protozoan Parasite Trichomonas Vaginalis In Complex
With Mre-1MRE-2r Dna
Length = 107
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 14 KGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLTEA 73
K +T EED KL ++ G W + +L + R + CR RW NY+ P L+ +
Sbjct: 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLM-ITRNPRQCRERWNNYINPALRTDPWSPE 59
Query: 74 EEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHW 108
E+ L+ +A G +W+KI+ L R+DN I+N W
Sbjct: 60 EDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRW 94
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSF|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSG|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
pdb|3OSG|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
Length = 126
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Query: 11 GVKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLL 70
KK +T EED+ L + +G W+ + R + CR RW NYL P +
Sbjct: 8 AAKKQKFTPEEDEMLKRAVAQHG-SDWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPW 65
Query: 71 TEAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNT 110
T E+ L++ G +W+ IA PGRTD IKN W T
Sbjct: 66 TAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVT 105
>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant
Length = 52
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 14 KGPWTAEEDKKLINFILTNGQCCWRAVPK-LAGLRRCGKSCRLRWTNYLRPD 64
KGPWT EED++LI + G W + K L G R GK CR RW N+L P+
Sbjct: 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPE 52
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 65 LKRGLLTEAEEQLVIDLHARLG-NRWSKIAARLPGRTDNEIKNHWNTHI 112
L +G T+ E+Q +I L + G RWS IA L GR + + W+ H+
Sbjct: 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
pdb|1MBH|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
Length = 53
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 14 KGPWTAEEDKKLINFILTNGQCCWRAVPK-LAGLRRCGKSCRLRWTNYLRPD 64
KGPWT EED+++I + G W + K L G R GK CR RW N+L P+
Sbjct: 3 KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPE 52
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 65 LKRGLLTEAEEQLVIDLHARLG-NRWSKIAARLPGRTDNEIKNHWNTHI 112
L +G T+ E+Q VI+L + G RWS IA L GR + + W+ H+
Sbjct: 1 LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2
Length = 52
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 14 KGPWTAEEDKKLINFILTNGQCCWRAVPK-LAGLRRCGKSCRLRWTNYLRPD 64
KGPWT EED+++I + G W + K L G R GK CR RW N+L P+
Sbjct: 3 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPE 52
Score = 34.7 bits (78), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 65 LKRGLLTEAEEQLVIDLHARLG-NRWSKIAARLPGRTDNEIKNHWNTHI 112
L +G T+ E+Q VI L + G RWS IA L GR + + W+ H+
Sbjct: 1 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
pdb|1MBF|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
Length = 53
Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 14 KGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYLRPD 64
K WT EED+KL + NG W+ + R C+ RW L P+
Sbjct: 3 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52
>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1
Length = 52
Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 14 KGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYLRPD 64
K WT EED+KL + NG W+ + R C+ RW L P+
Sbjct: 3 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52
>pdb|2CU7|A Chain A, Solution Structure Of The Sant Domain Of Human Kiaa1915
Protein
Length = 72
Score = 30.8 bits (68), Expect = 0.89, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 71 TEAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKLLKMGIDPVT 125
T E++L A+ G RW+KI+ + RT ++K++ + K K +K G+D T
Sbjct: 13 TIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNK-VKCGLDKET 66
>pdb|2DIM|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of
Human Cell Division Cycle 5-Like Protein
Length = 70
Score = 30.4 bits (67), Expect = 1.1, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 17 WTAEEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKR 67
W ED+ L ++ G+ W + L R+ K C+ RW +L P +K+
Sbjct: 12 WRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKK 61
>pdb|4EEF|G Chain G, Crystal Structure Of The Designed Inhibitor Protein
F-Hb80.4 In Complex With The 1918 Influenza Virus
Hemagglutinin.
pdb|4EEF|H Chain H, Crystal Structure Of The Designed Inhibitor Protein
F-Hb80.4 In Complex With The 1918 Influenza Virus
Hemagglutinin.
pdb|4EEF|I Chain I, Crystal Structure Of The Designed Inhibitor Protein
F-Hb80.4 In Complex With The 1918 Influenza Virus
Hemagglutinin
Length = 74
Score = 28.5 bits (62), Expect = 3.8, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 87 NRWSKIAARLPGRTDNEIKNHW 108
+RW K+A + GRT E+K H+
Sbjct: 44 DRWKKVAQYVKGRTPEEVKKHY 65
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.452
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,353,831
Number of Sequences: 62578
Number of extensions: 334504
Number of successful extensions: 792
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 739
Number of HSP's gapped (non-prelim): 38
length of query: 267
length of database: 14,973,337
effective HSP length: 97
effective length of query: 170
effective length of database: 8,903,271
effective search space: 1513556070
effective search space used: 1513556070
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)