Query 024441
Match_columns 267
No_of_seqs 293 out of 1415
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 08:17:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024441.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024441hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gv2_A C-MYB, MYB proto-oncoge 100.0 8.9E-35 3E-39 228.5 8.8 105 11-116 1-105 (105)
2 3zqc_A MYB3; transcription-DNA 100.0 3.4E-34 1.2E-38 234.0 9.9 110 14-124 2-111 (131)
3 2k9n_A MYB24; R2R3 domain, DNA 100.0 2E-34 6.7E-39 227.8 8.0 104 14-118 1-104 (107)
4 1h8a_C AMV V-MYB, MYB transfor 100.0 5.5E-34 1.9E-38 231.7 8.5 108 7-115 20-127 (128)
5 3osg_A MYB21; transcription-DN 100.0 8.8E-34 3E-38 230.2 8.7 106 8-115 5-110 (126)
6 1h89_C C-MYB, MYB proto-oncoge 100.0 5.5E-33 1.9E-37 233.5 1.6 126 11-137 3-129 (159)
7 1h89_C C-MYB, MYB proto-oncoge 100.0 9.6E-32 3.3E-36 225.9 6.9 108 8-116 52-159 (159)
8 1h8a_C AMV V-MYB, MYB transfor 99.9 5E-24 1.7E-28 172.9 1.5 97 40-137 1-98 (128)
9 2dim_A Cell division cycle 5-l 99.8 1.4E-22 4.8E-27 148.3 1.8 67 8-75 3-69 (70)
10 1ign_A Protein (RAP1); RAP1,ye 99.8 5E-19 1.7E-23 156.2 5.8 106 9-115 3-200 (246)
11 2llk_A Cyclin-D-binding MYB-li 99.7 1.3E-18 4.5E-23 128.4 4.8 58 54-112 10-67 (73)
12 2dim_A Cell division cycle 5-l 99.7 4.1E-18 1.4E-22 124.4 5.8 65 62-126 4-69 (70)
13 2din_A Cell division cycle 5-l 99.7 1E-17 3.6E-22 120.9 6.9 60 60-120 2-61 (66)
14 2cu7_A KIAA1915 protein; nucle 99.7 1.5E-17 5E-22 122.2 7.1 65 61-126 3-67 (72)
15 2d9a_A B-MYB, MYB-related prot 99.7 3.7E-18 1.3E-22 121.0 3.3 57 9-66 3-59 (60)
16 1gvd_A MYB proto-oncogene prot 99.7 5E-18 1.7E-22 116.9 2.4 52 12-64 1-52 (52)
17 2juh_A Telomere binding protei 99.7 7.6E-18 2.6E-22 135.4 2.8 83 9-91 12-103 (121)
18 1guu_A C-MYB, MYB proto-oncoge 99.7 8.5E-18 2.9E-22 115.7 1.7 52 12-64 1-52 (52)
19 2d9a_A B-MYB, MYB-related prot 99.7 5.1E-17 1.7E-21 115.1 4.9 55 62-116 3-58 (60)
20 2roh_A RTBP1, telomere binding 99.6 6.8E-17 2.3E-21 130.0 4.5 80 9-88 26-114 (122)
21 1guu_A C-MYB, MYB proto-oncoge 99.6 1.8E-16 6.2E-21 109.0 5.8 50 65-114 1-51 (52)
22 1ity_A TRF1; helix-turn-helix, 99.6 4.3E-17 1.5E-21 118.7 2.7 63 9-71 5-68 (69)
23 1ity_A TRF1; helix-turn-helix, 99.6 3.3E-16 1.1E-20 114.0 6.9 61 60-120 3-66 (69)
24 1gvd_A MYB proto-oncogene prot 99.6 3.2E-16 1.1E-20 107.8 5.7 50 65-114 1-51 (52)
25 1x41_A Transcriptional adaptor 99.6 1.1E-16 3.7E-21 113.6 2.9 56 9-65 3-58 (60)
26 3sjm_A Telomeric repeat-bindin 99.6 1E-16 3.5E-21 115.4 1.6 56 11-66 8-64 (64)
27 1x41_A Transcriptional adaptor 99.6 7.9E-16 2.7E-20 109.1 5.5 53 62-114 3-56 (60)
28 1w0t_A Telomeric repeat bindin 99.6 1E-15 3.5E-20 105.8 5.9 49 66-114 1-52 (53)
29 2yum_A ZZZ3 protein, zinc fing 99.6 2.2E-15 7.4E-20 111.2 5.7 58 62-119 3-66 (75)
30 2din_A Cell division cycle 5-l 99.6 1.8E-16 6.1E-21 114.4 -0.4 58 8-68 3-60 (66)
31 2yum_A ZZZ3 protein, zinc fing 99.6 3.5E-16 1.2E-20 115.5 1.2 61 8-69 2-67 (75)
32 3sjm_A Telomeric repeat-bindin 99.6 3.4E-15 1.2E-19 107.3 5.9 52 65-116 9-63 (64)
33 2elk_A SPCC24B10.08C protein; 99.6 9.6E-16 3.3E-20 108.1 2.6 52 10-61 5-56 (58)
34 3osg_A MYB21; transcription-DN 99.5 1.3E-15 4.3E-20 123.2 2.5 75 62-136 6-80 (126)
35 2elk_A SPCC24B10.08C protein; 99.5 8E-15 2.7E-19 103.3 5.9 50 63-112 5-56 (58)
36 1w0t_A Telomeric repeat bindin 99.5 1.2E-15 4.2E-20 105.4 1.7 50 13-62 1-51 (53)
37 1gv2_A C-MYB, MYB proto-oncoge 99.5 1.1E-15 3.8E-20 119.4 1.6 74 64-137 1-75 (105)
38 2cu7_A KIAA1915 protein; nucle 99.5 2.4E-15 8.2E-20 110.3 1.0 58 8-67 3-60 (72)
39 2ltp_A Nuclear receptor corepr 99.2 1.7E-15 5.9E-20 115.7 0.0 56 60-115 9-64 (89)
40 2k9n_A MYB24; R2R3 domain, DNA 99.5 3.8E-15 1.3E-19 117.0 1.6 71 67-137 1-72 (107)
41 3zqc_A MYB3; transcription-DNA 99.5 7.5E-15 2.6E-19 119.3 2.3 71 67-137 2-73 (131)
42 2cqr_A RSGI RUH-043, DNAJ homo 99.4 1.1E-13 3.7E-18 102.0 5.6 51 63-113 14-68 (73)
43 2llk_A Cyclin-D-binding MYB-li 99.4 4.4E-14 1.5E-18 104.1 2.9 59 4-66 13-71 (73)
44 2yus_A SWI/SNF-related matrix- 99.4 1.4E-13 4.6E-18 103.0 3.1 52 7-60 11-62 (79)
45 2yus_A SWI/SNF-related matrix- 99.4 2.5E-13 8.7E-18 101.5 4.3 48 64-111 15-62 (79)
46 2aje_A Telomere repeat-binding 99.4 1.6E-13 5.4E-18 107.8 3.0 80 8-87 7-95 (105)
47 2ckx_A NGTRF1, telomere bindin 99.3 4.8E-13 1.7E-17 100.9 4.0 69 15-84 1-79 (83)
48 1x58_A Hypothetical protein 49 99.3 2.1E-12 7.1E-17 91.7 6.3 50 65-114 6-58 (62)
49 1ign_A Protein (RAP1); RAP1,ye 99.3 1E-12 3.5E-17 116.1 5.1 67 63-130 4-76 (246)
50 2ltp_A Nuclear receptor corepr 99.0 1.7E-13 5.7E-18 104.6 0.0 54 8-63 10-63 (89)
51 2cqr_A RSGI RUH-043, DNAJ homo 99.3 2.9E-13 9.8E-18 99.7 1.0 55 7-62 11-68 (73)
52 2ckx_A NGTRF1, telomere bindin 99.3 2.8E-12 9.4E-17 96.7 6.4 49 68-116 1-54 (83)
53 2juh_A Telomere binding protei 99.3 2.4E-12 8.2E-17 103.4 5.7 54 61-114 11-69 (121)
54 2aje_A Telomere repeat-binding 99.3 6.2E-12 2.1E-16 98.6 7.6 53 63-115 9-66 (105)
55 2cjj_A Radialis; plant develop 99.3 5.5E-12 1.9E-16 97.0 6.5 50 66-115 7-60 (93)
56 2roh_A RTBP1, telomere binding 99.2 5.3E-12 1.8E-16 101.5 4.8 54 62-115 26-84 (122)
57 3hm5_A DNA methyltransferase 1 99.0 4E-10 1.4E-14 86.4 6.3 67 50-120 17-88 (93)
58 2eqr_A N-COR1, N-COR, nuclear 99.0 4.1E-10 1.4E-14 79.8 5.7 47 66-112 11-57 (61)
59 2cjj_A Radialis; plant develop 99.0 5.6E-11 1.9E-15 91.3 0.6 48 13-61 7-57 (93)
60 2cqq_A RSGI RUH-037, DNAJ homo 99.0 5.8E-10 2E-14 81.8 5.3 56 64-120 5-64 (72)
61 2eqr_A N-COR1, N-COR, nuclear 98.7 3.4E-09 1.2E-13 75.1 2.3 52 8-61 6-57 (61)
62 2iw5_B Protein corest, REST co 98.7 1.1E-08 3.8E-13 89.6 6.0 49 66-114 132-180 (235)
63 1x58_A Hypothetical protein 49 98.7 2.8E-09 9.6E-14 75.6 1.0 48 13-62 7-57 (62)
64 2cqq_A RSGI RUH-037, DNAJ homo 98.6 5.1E-09 1.8E-13 76.7 1.2 51 10-62 4-57 (72)
65 1wgx_A KIAA1903 protein; MYB D 98.6 4E-08 1.4E-12 72.0 5.2 48 67-114 8-59 (73)
66 2xag_B REST corepressor 1; ami 98.5 6.7E-08 2.3E-12 93.3 4.7 47 68-114 381-427 (482)
67 1fex_A TRF2-interacting telome 98.5 1.1E-07 3.7E-12 67.0 4.5 47 67-113 2-58 (59)
68 1fex_A TRF2-interacting telome 98.4 3.8E-08 1.3E-12 69.3 0.9 48 14-62 2-58 (59)
69 1wgx_A KIAA1903 protein; MYB D 98.4 4.7E-08 1.6E-12 71.7 1.4 48 14-62 8-58 (73)
70 2iw5_B Protein corest, REST co 98.3 1.7E-07 5.9E-12 82.2 1.9 49 12-62 131-179 (235)
71 2yqk_A Arginine-glutamic acid 98.2 4.1E-06 1.4E-10 59.5 6.5 48 63-110 5-53 (63)
72 1ug2_A 2610100B20RIK gene prod 98.2 2.3E-06 7.9E-11 64.7 5.2 47 69-115 35-84 (95)
73 4eef_G F-HB80.4, designed hema 98.1 4.7E-07 1.6E-11 66.1 1.2 43 67-109 20-66 (74)
74 1ofc_X ISWI protein; nuclear p 98.1 2.6E-06 8.8E-11 78.1 5.6 102 15-117 111-278 (304)
75 2lr8_A CAsp8-associated protei 97.3 5.7E-07 1.9E-11 64.6 0.0 45 69-114 16-63 (70)
76 4eef_G F-HB80.4, designed hema 98.0 1.2E-06 4E-11 64.0 0.5 44 14-58 20-66 (74)
77 4iej_A DNA methyltransferase 1 97.9 4.2E-05 1.4E-09 58.3 7.3 60 56-119 23-87 (93)
78 2yqk_A Arginine-glutamic acid 97.8 7E-06 2.4E-10 58.3 2.4 50 8-59 3-53 (63)
79 2crg_A Metastasis associated p 97.7 8E-05 2.7E-09 53.9 6.0 43 67-109 8-51 (70)
80 4a69_C Nuclear receptor corepr 97.6 7.2E-05 2.5E-09 57.2 5.7 44 67-110 43-86 (94)
81 2xag_B REST corepressor 1; ami 97.5 3.4E-05 1.2E-09 74.5 2.5 46 13-60 379-424 (482)
82 3hm5_A DNA methyltransferase 1 97.1 0.00012 3.9E-09 56.0 1.4 48 13-61 29-80 (93)
83 2ebi_A DNA binding protein GT- 97.1 0.0004 1.4E-08 51.7 4.0 49 67-115 4-66 (86)
84 2crg_A Metastasis associated p 97.1 0.00015 5.1E-09 52.4 1.5 45 13-59 7-52 (70)
85 4a69_C Nuclear receptor corepr 97.0 0.00018 6E-09 55.0 1.5 44 14-59 43-86 (94)
86 4b4c_A Chromodomain-helicase-D 97.0 0.00094 3.2E-08 57.3 6.0 46 69-114 136-196 (211)
87 2y9y_A Imitation switch protei 96.9 0.0011 3.6E-08 62.3 6.1 104 15-118 124-295 (374)
88 2ebi_A DNA binding protein GT- 96.9 8.9E-05 3E-09 55.3 -1.1 49 13-61 3-63 (86)
89 2lr8_A CAsp8-associated protei 95.4 0.00055 1.9E-08 49.1 0.0 47 14-62 14-62 (70)
90 1ug2_A 2610100B20RIK gene prod 96.1 0.0023 7.7E-08 48.4 2.0 47 13-60 32-80 (95)
91 1irz_A ARR10-B; helix-turn-hel 94.5 0.12 4.1E-06 36.5 6.5 47 66-112 6-57 (64)
92 1ofc_X ISWI protein; nuclear p 93.6 0.12 4.2E-06 47.1 6.6 48 67-114 110-158 (304)
93 4b4c_A Chromodomain-helicase-D 93.6 0.06 2E-06 45.8 4.3 38 5-42 125-162 (211)
94 4iej_A DNA methyltransferase 1 93.5 0.024 8.4E-07 43.0 1.5 49 12-61 28-80 (93)
95 2xb0_X Chromo domain-containin 87.9 0.34 1.2E-05 43.4 3.5 26 69-94 170-196 (270)
96 2xb0_X Chromo domain-containin 87.9 0.26 8.9E-06 44.2 2.7 28 15-42 169-196 (270)
97 1irz_A ARR10-B; helix-turn-hel 78.0 2.4 8.3E-05 29.7 3.8 45 11-55 4-51 (64)
98 2lm1_A Lysine-specific demethy 59.9 14 0.00048 27.7 5.0 40 76-115 47-98 (107)
99 2jrz_A Histone demethylase jar 59.7 11 0.00039 28.9 4.5 40 76-115 43-94 (117)
100 2o8x_A Probable RNA polymerase 58.7 14 0.00048 24.4 4.5 43 70-114 16-58 (70)
101 2li6_A SWI/SNF chromatin-remod 58.6 6.1 0.00021 30.4 2.8 39 77-115 53-99 (116)
102 2eqy_A RBP2 like, jumonji, at 56.1 15 0.00052 28.4 4.7 40 76-115 45-96 (122)
103 1u78_A TC3 transposase, transp 56.0 53 0.0018 24.5 7.9 86 15-106 5-98 (141)
104 2y9y_A Imitation switch protei 55.3 21 0.00073 33.2 6.3 45 68-112 124-170 (374)
105 1ku3_A Sigma factor SIGA; heli 54.7 14 0.00047 25.2 3.9 44 70-115 11-58 (73)
106 2cxy_A BAF250B subunit, HBAF25 54.2 16 0.00055 28.3 4.6 40 76-115 54-105 (125)
107 1kkx_A Transcription regulator 53.5 9 0.00031 29.9 3.0 40 77-116 52-99 (123)
108 1c20_A DEAD ringer protein; DN 52.2 19 0.00064 28.1 4.7 40 76-115 55-107 (128)
109 2p7v_B Sigma-70, RNA polymeras 49.9 14 0.00047 24.9 3.2 30 85-115 24-53 (68)
110 2rq5_A Protein jumonji; develo 49.7 18 0.00062 28.2 4.2 77 13-115 6-97 (121)
111 2li6_A SWI/SNF chromatin-remod 48.0 4.1 0.00014 31.4 0.2 39 24-63 53-98 (116)
112 2rq5_A Protein jumonji; develo 47.6 5.4 0.00018 31.2 0.8 57 24-83 46-113 (121)
113 2kk0_A AT-rich interactive dom 47.2 20 0.00067 28.7 4.2 40 76-115 67-119 (145)
114 3i4p_A Transcriptional regulat 45.9 24 0.00081 28.0 4.5 45 73-118 3-48 (162)
115 3hug_A RNA polymerase sigma fa 45.3 28 0.00096 24.7 4.5 40 74-114 41-80 (92)
116 2jxj_A Histone demethylase jar 44.1 12 0.00039 27.6 2.2 39 76-114 39-89 (96)
117 3cz6_A DNA-binding protein RAP 43.4 20 0.00067 29.7 3.6 29 10-41 110-146 (168)
118 1ig6_A MRF-2, modulator recogn 43.3 7.1 0.00024 29.5 0.9 40 24-63 37-87 (107)
119 2jvw_A Uncharacterized protein 42.5 8.3 0.00028 28.5 1.1 45 22-79 18-69 (88)
120 1x3u_A Transcriptional regulat 40.1 52 0.0018 22.1 5.1 42 70-114 17-58 (79)
121 3c57_A Two component transcrip 37.1 48 0.0016 23.8 4.6 44 69-115 27-70 (95)
122 3e7l_A Transcriptional regulat 35.6 45 0.0015 22.2 4.0 33 72-105 18-50 (63)
123 3ulq_B Transcriptional regulat 35.6 63 0.0022 23.2 5.1 46 66-114 26-71 (90)
124 1ntc_A Protein (nitrogen regul 35.2 57 0.002 23.4 4.8 35 72-107 50-84 (91)
125 1tty_A Sigma-A, RNA polymerase 34.7 42 0.0014 23.6 3.9 43 71-115 20-66 (87)
126 1je8_A Nitrate/nitrite respons 34.5 52 0.0018 22.9 4.4 43 69-114 21-63 (82)
127 1or7_A Sigma-24, RNA polymeras 33.9 49 0.0017 26.0 4.6 30 85-115 155-184 (194)
128 1fse_A GERE; helix-turn-helix 33.5 59 0.002 21.4 4.4 44 68-114 10-53 (74)
129 2q1z_A RPOE, ECF SIGE; ECF sig 33.3 33 0.0011 26.9 3.5 30 85-115 150-179 (184)
130 3cz6_A DNA-binding protein RAP 33.2 34 0.0012 28.2 3.5 17 63-79 110-126 (168)
131 2jpc_A SSRB; DNA binding prote 31.9 71 0.0024 20.3 4.4 38 75-114 3-40 (61)
132 2yqf_A Ankyrin-1; death domain 31.2 62 0.0021 24.2 4.5 35 71-106 14-48 (111)
133 2e1c_A Putative HTH-type trans 30.3 65 0.0022 25.8 4.8 45 73-118 27-72 (171)
134 1xsv_A Hypothetical UPF0122 pr 29.8 70 0.0024 23.9 4.6 43 70-114 26-68 (113)
135 3i4p_A Transcriptional regulat 29.5 9.8 0.00034 30.4 -0.4 39 20-60 3-41 (162)
136 2dbb_A Putative HTH-type trans 28.8 81 0.0028 24.2 5.0 44 74-118 10-54 (151)
137 2of5_A Death domain-containing 28.3 54 0.0019 25.0 3.8 39 63-105 15-53 (114)
138 2o71_A Death domain-containing 27.7 57 0.002 24.9 3.8 35 66-104 18-52 (115)
139 2of5_H Leucine-rich repeat and 27.5 53 0.0018 25.0 3.6 30 76-106 14-43 (118)
140 2rnj_A Response regulator prot 27.2 63 0.0022 22.8 3.8 43 69-114 29-71 (91)
141 3mzy_A RNA polymerase sigma-H 26.6 60 0.002 24.4 3.8 29 85-114 123-151 (164)
142 2cyy_A Putative HTH-type trans 26.2 97 0.0033 23.8 5.1 44 74-118 8-52 (151)
143 1rp3_A RNA polymerase sigma fa 25.9 76 0.0026 25.6 4.6 30 84-114 201-230 (239)
144 1k78_A Paired box protein PAX5 24.7 1.7E+02 0.0058 22.1 6.2 100 12-115 28-146 (149)
145 1wxp_A THO complex subunit 1; 24.0 88 0.003 23.3 4.2 30 76-106 19-48 (110)
146 2k27_A Paired box protein PAX- 23.8 2.5E+02 0.0084 21.5 7.8 77 15-96 24-111 (159)
147 1p4w_A RCSB; solution structur 22.7 1.5E+02 0.005 21.6 5.2 45 67-114 32-76 (99)
148 1umq_A Photosynthetic apparatu 21.8 74 0.0025 22.8 3.2 35 71-106 39-73 (81)
149 1i1g_A Transcriptional regulat 21.8 1.3E+02 0.0044 22.5 4.9 43 75-118 6-49 (141)
150 1s7o_A Hypothetical UPF0122 pr 20.7 1.1E+02 0.0038 22.8 4.2 43 70-114 23-65 (113)
No 1
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=100.00 E-value=8.9e-35 Score=228.50 Aligned_cols=105 Identities=47% Similarity=0.925 Sum_probs=99.5
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCCCchhchhhcCccCCcccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCChh
Q 024441 11 GVKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLTEAEEQLVIDLHARLGNRWS 90 (267)
Q Consensus 11 ~ikkg~WT~eED~~L~~~v~~~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~p~~~~~~WT~eED~~Ll~lv~~~G~~W~ 90 (267)
.+++|+||+|||++|+++|.+||..+|..||+.|+ +|++.||++||.++|+|.+++++||+|||.+|+++|.+||++|.
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~ 79 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA 79 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhc-CCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence 47899999999999999999999889999999997 99999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCCHHHHHHHHHHHHHHHH
Q 024441 91 KIAARLPGRTDNEIKNHWNTHIKKKL 116 (267)
Q Consensus 91 ~IA~~lpgRT~~q~knRw~~~l~~~~ 116 (267)
.||+.|||||++||++||+.++++++
T Consensus 80 ~Ia~~l~gRt~~~~k~rw~~~~~~~~ 105 (105)
T 1gv2_A 80 EIAKLLPGRTDNAIKNHWNSTMRRKV 105 (105)
T ss_dssp HHHTTCTTCCHHHHHHHHHHHTC---
T ss_pred HHHHHcCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999988763
No 2
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=100.00 E-value=3.4e-34 Score=234.00 Aligned_cols=110 Identities=35% Similarity=0.658 Sum_probs=105.1
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCchhchhhcCccCCcccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCChhhhh
Q 024441 14 KGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLTEAEEQLVIDLHARLGNRWSKIA 93 (267)
Q Consensus 14 kg~WT~eED~~L~~~v~~~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~p~~~~~~WT~eED~~Ll~lv~~~G~~W~~IA 93 (267)
||+||+|||++|+++|..||..+|..||+.|+ +|++.||++||.++|+|.+++++||+|||++|+++|.+||++|..||
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia 80 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA 80 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCT-TSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHC-CCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 79999999999999999999999999999997 99999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHhhCCCCCC
Q 024441 94 ARLPGRTDNEIKNHWNTHIKKKLLKMGIDPV 124 (267)
Q Consensus 94 ~~lpgRT~~q~knRw~~~l~~~~~k~~~~~~ 124 (267)
++|||||++||++||+.++++++....++..
T Consensus 81 ~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~~ 111 (131)
T 3zqc_A 81 KLIPGRTDNAIKNRWNSSISKRISTNSNHKE 111 (131)
T ss_dssp TTSTTCCHHHHHHHHHHTTGGGCCCCTTSCC
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhhcCCCccc
Confidence 9999999999999999999999877665444
No 3
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=100.00 E-value=2e-34 Score=227.75 Aligned_cols=104 Identities=32% Similarity=0.588 Sum_probs=100.3
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCchhchhhcCccCCcccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCChhhhh
Q 024441 14 KGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLTEAEEQLVIDLHARLGNRWSKIA 93 (267)
Q Consensus 14 kg~WT~eED~~L~~~v~~~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~p~~~~~~WT~eED~~Ll~lv~~~G~~W~~IA 93 (267)
||+||+|||++|+++|.+||..+|..||+.|+ +|++.||++||.++|+|.+++++||+|||.+|+++|.+||++|..||
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia 79 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS 79 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTT-TSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcC-CCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence 68999999999999999999889999999998 99999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHhh
Q 024441 94 ARLPGRTDNEIKNHWNTHIKKKLLK 118 (267)
Q Consensus 94 ~~lpgRT~~q~knRw~~~l~~~~~k 118 (267)
+.|||||++||++||+.++++..++
T Consensus 80 ~~l~gRt~~~~k~rw~~l~r~~~~~ 104 (107)
T 2k9n_A 80 KFLKNRSDNNIRNRWMMIARHRAKH 104 (107)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred HHCCCCCHHHHHHHHHHHHhhHHHh
Confidence 9999999999999999999887554
No 4
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=100.00 E-value=5.5e-34 Score=231.70 Aligned_cols=108 Identities=44% Similarity=0.876 Sum_probs=102.8
Q ss_pred ccCCCCccCCCCHHHHHHHHHHHHHhCCCCCchhchhhcCccCCcccccccccccCCCCCCCCCCHHHHHHHHHHHHHhC
Q 024441 7 CDKLGVKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLTEAEEQLVIDLHARLG 86 (267)
Q Consensus 7 ~~k~~ikkg~WT~eED~~L~~~v~~~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~p~~~~~~WT~eED~~Ll~lv~~~G 86 (267)
..+|++++|+||+|||++|+++|.+||..+|..||+.|+ +|++.||++||.++|+|.+++++||+|||++|+++|.+||
T Consensus 20 ~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~G 98 (128)
T 1h8a_C 20 VLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLG 98 (128)
T ss_dssp --CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSS-SCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHHC
T ss_pred hhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhc-CCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHC
Confidence 368999999999999999999999999889999999998 9999999999999999999999999999999999999999
Q ss_pred CChhhhhccCCCCCHHHHHHHHHHHHHHH
Q 024441 87 NRWSKIAARLPGRTDNEIKNHWNTHIKKK 115 (267)
Q Consensus 87 ~~W~~IA~~lpgRT~~q~knRw~~~l~~~ 115 (267)
++|..||+.|||||+++|++||+.+++++
T Consensus 99 ~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~ 127 (128)
T 1h8a_C 99 NRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127 (128)
T ss_dssp SCHHHHGGGSTTCCHHHHHHHHHTTTTC-
T ss_pred cCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999999998875
No 5
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=100.00 E-value=8.8e-34 Score=230.23 Aligned_cols=106 Identities=34% Similarity=0.601 Sum_probs=101.4
Q ss_pred cCCCCccCCCCHHHHHHHHHHHHHhCCCCCchhchhhcCccCCcccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 024441 8 DKLGVKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLTEAEEQLVIDLHARLGN 87 (267)
Q Consensus 8 ~k~~ikkg~WT~eED~~L~~~v~~~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~p~~~~~~WT~eED~~Ll~lv~~~G~ 87 (267)
.+++.+||+||+|||++|+++|.+||. +|..||+.|+ +|++.||++||.++|+|.+++++||+|||++|+++|.+||+
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~ 82 (126)
T 3osg_A 5 NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGR 82 (126)
T ss_dssp C-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCT-TCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCc
Confidence 467899999999999999999999997 8999999998 89999999999999999999999999999999999999999
Q ss_pred ChhhhhccCCCCCHHHHHHHHHHHHHHH
Q 024441 88 RWSKIAARLPGRTDNEIKNHWNTHIKKK 115 (267)
Q Consensus 88 ~W~~IA~~lpgRT~~q~knRw~~~l~~~ 115 (267)
+|..||+.|||||++||++||+.++++.
T Consensus 83 ~W~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 83 QWAIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999888775
No 6
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.97 E-value=5.5e-33 Score=233.46 Aligned_cols=126 Identities=30% Similarity=0.569 Sum_probs=80.8
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCCCchhchhhcCccCCcccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCC-Ch
Q 024441 11 GVKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLTEAEEQLVIDLHARLGN-RW 89 (267)
Q Consensus 11 ~ikkg~WT~eED~~L~~~v~~~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~p~~~~~~WT~eED~~Ll~lv~~~G~-~W 89 (267)
++++++||+|||++|+++|.+||..+|..||+.|+ +|++.||++||.++|+|.+++++||+|||++|+++|.+||. +|
T Consensus 3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W 81 (159)
T 1h89_C 3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRW 81 (159)
T ss_dssp -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccH
Confidence 36899999999999999999999989999999998 99999999999999999999999999999999999999995 69
Q ss_pred hhhhccCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCcCcccccccC
Q 024441 90 SKIAARLPGRTDNEIKNHWNTHIKKKLLKMGIDPVTHEPLHKETKAED 137 (267)
Q Consensus 90 ~~IA~~lpgRT~~q~knRw~~~l~~~~~k~~~~~~~~~~l~~~~~~~~ 137 (267)
..||..|||||+.||++||+++|.+.+.+.+|++.++..|.......+
T Consensus 82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g 129 (159)
T 1h89_C 82 SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLG 129 (159)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999998887665443
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.97 E-value=9.6e-32 Score=225.87 Aligned_cols=108 Identities=45% Similarity=0.882 Sum_probs=103.2
Q ss_pred cCCCCccCCCCHHHHHHHHHHHHHhCCCCCchhchhhcCccCCcccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 024441 8 DKLGVKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLTEAEEQLVIDLHARLGN 87 (267)
Q Consensus 8 ~k~~ikkg~WT~eED~~L~~~v~~~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~p~~~~~~WT~eED~~Ll~lv~~~G~ 87 (267)
.+|.+++|+||+|||++|+++|.+||..+|..||+.|+ +|++.||+.||.++|+|.+++++||+|||.+|++++.+||+
T Consensus 52 l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~ 130 (159)
T 1h89_C 52 LNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGN 130 (159)
T ss_dssp TCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTST-TCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred cCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcC-CCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCC
Confidence 67999999999999999999999999888999999997 99999999999999999999999999999999999999999
Q ss_pred ChhhhhccCCCCCHHHHHHHHHHHHHHHH
Q 024441 88 RWSKIAARLPGRTDNEIKNHWNTHIKKKL 116 (267)
Q Consensus 88 ~W~~IA~~lpgRT~~q~knRw~~~l~~~~ 116 (267)
+|..||++|||||+++|++||+.++++++
T Consensus 131 ~W~~Ia~~l~gRt~~~~knr~~~~~r~~~ 159 (159)
T 1h89_C 131 RWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159 (159)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHTTTCC--
T ss_pred CHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999999988753
No 8
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.88 E-value=5e-24 Score=172.88 Aligned_cols=97 Identities=27% Similarity=0.538 Sum_probs=70.9
Q ss_pred hchhhcCccCCcccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCC-ChhhhhccCCCCCHHHHHHHHHHHHHHHHhh
Q 024441 40 VPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLTEAEEQLVIDLHARLGN-RWSKIAARLPGRTDNEIKNHWNTHIKKKLLK 118 (267)
Q Consensus 40 IA~~~~~~Rt~~QCr~Rw~~~L~p~~~~~~WT~eED~~Ll~lv~~~G~-~W~~IA~~lpgRT~~q~knRw~~~l~~~~~k 118 (267)
||+.|+ +|++.||+.||.++|+|.+++++||+|||++|+++|.+||. +|..||..|||||+.||++||..+|.+.+.+
T Consensus 1 Ia~~~~-~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~ 79 (128)
T 1h8a_C 1 MEAVIK-NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKK 79 (128)
T ss_dssp ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCC
T ss_pred CccccC-CCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccccc
Confidence 788887 99999999999999999999999999999999999999995 6999999999999999999999999999999
Q ss_pred CCCCCCCCCcCcccccccC
Q 024441 119 MGIDPVTHEPLHKETKAED 137 (267)
Q Consensus 119 ~~~~~~~~~~l~~~~~~~~ 137 (267)
++|++++++.|.......+
T Consensus 80 ~~WT~eEd~~L~~~~~~~G 98 (128)
T 1h8a_C 80 TSWTEEEDRIIYQAHKRLG 98 (128)
T ss_dssp SCCCHHHHHHHHHHHHHHC
T ss_pred ccCCHHHHHHHHHHHHHHC
Confidence 9999999988887665443
No 9
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1.4e-22 Score=148.25 Aligned_cols=67 Identities=25% Similarity=0.558 Sum_probs=64.5
Q ss_pred cCCCCccCCCCHHHHHHHHHHHHHhCCCCCchhchhhcCccCCcccccccccccCCCCCCCCCCHHHH
Q 024441 8 DKLGVKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLTEAEE 75 (267)
Q Consensus 8 ~k~~ikkg~WT~eED~~L~~~v~~~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~p~~~~~~WT~eED 75 (267)
..|.+++|+||+|||++|+++|.+||..+|..||+.|+ +|+++||++||.++|+|.+++++||+|||
T Consensus 3 s~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 3 SGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp SCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHST-TCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhc-CCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 46789999999999999999999999889999999998 99999999999999999999999999997
No 10
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.75 E-value=5e-19 Score=156.24 Aligned_cols=106 Identities=16% Similarity=0.265 Sum_probs=92.0
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCC-----CchhchhhcCccCCcccccccccccCCCCC-----------------
Q 024441 9 KLGVKKGPWTAEEDKKLINFILTNGQCC-----WRAVPKLAGLRRCGKSCRLRWTNYLRPDLK----------------- 66 (267)
Q Consensus 9 k~~ikkg~WT~eED~~L~~~v~~~g~~~-----W~~IA~~~~~~Rt~~QCr~Rw~~~L~p~~~----------------- 66 (267)
.+.++|++||+|||++|+++|.++|... |..||+.|+ +||+.|||.||.++|.+.+.
T Consensus 3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~Lp-GRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~G 81 (246)
T 1ign_A 3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG 81 (246)
T ss_dssp -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcC-CCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCC
Confidence 4578899999999999999999998643 999999998 99999999999999999986
Q ss_pred ------------CCCCCHHHHHHHHHHHHH-h--------------------------------CC--------------
Q 024441 67 ------------RGLLTEAEEQLVIDLHAR-L--------------------------------GN-------------- 87 (267)
Q Consensus 67 ------------~~~WT~eED~~Ll~lv~~-~--------------------------------G~-------------- 87 (267)
+..||.+||-.|+..+.+ | |.
T Consensus 82 n~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 161 (246)
T 1ign_A 82 NLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYR 161 (246)
T ss_dssp CBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------C
T ss_pred CceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhc
Confidence 789999999999998876 1 11
Q ss_pred -----------ChhhhhccCCCCCHHHHHHHHHHHHHHH
Q 024441 88 -----------RWSKIAARLPGRTDNEIKNHWNTHIKKK 115 (267)
Q Consensus 88 -----------~W~~IA~~lpgRT~~q~knRw~~~l~~~ 115 (267)
.|..||+.+|+||.+++|+||...|+..
T Consensus 162 ~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 162 TQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred cccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 5999999999999999999999988875
No 11
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.73 E-value=1.3e-18 Score=128.38 Aligned_cols=58 Identities=22% Similarity=0.318 Sum_probs=47.2
Q ss_pred ccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCChhhhhccCCCCCHHHHHHHHHHHH
Q 024441 54 RLRWTNYLRPDLKRGLLTEAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHI 112 (267)
Q Consensus 54 r~Rw~~~L~p~~~~~~WT~eED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~knRw~~~l 112 (267)
.-||.++|+|.+++++||+|||++|+++|++||++|+.||+.| |||++|||+||+.+.
T Consensus 10 ~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~ 67 (73)
T 2llk_A 10 GRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMK 67 (73)
T ss_dssp ---------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCS
T ss_pred CcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHH
Confidence 4589999999999999999999999999999999999999999 999999999998643
No 12
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=4.1e-18 Score=124.41 Aligned_cols=65 Identities=20% Similarity=0.394 Sum_probs=61.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CChhhhhccCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCC
Q 024441 62 RPDLKRGLLTEAEEQLVIDLHARLG-NRWSKIAARLPGRTDNEIKNHWNTHIKKKLLKMGIDPVTH 126 (267)
Q Consensus 62 ~p~~~~~~WT~eED~~Ll~lv~~~G-~~W~~IA~~lpgRT~~q~knRw~~~l~~~~~k~~~~~~~~ 126 (267)
.|.+++++||+|||++|+++|.+|| ++|..||..|+|||+.||++||+++|++.+++++|++.++
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 4678999999999999999999999 7999999999999999999999999999999999998875
No 13
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=1e-17 Score=120.90 Aligned_cols=60 Identities=20% Similarity=0.303 Sum_probs=57.4
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhCCChhhhhccCCCCCHHHHHHHHHHHHHHHHhhCC
Q 024441 60 YLRPDLKRGLLTEAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKLLKMG 120 (267)
Q Consensus 60 ~L~p~~~~~~WT~eED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~knRw~~~l~~~~~k~~ 120 (267)
+|+|.+++++||+|||++|+++|++||.+|.+||+ ++|||++|||+||+.+|++.+++..
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCC
Confidence 79999999999999999999999999999999999 8899999999999999999988754
No 14
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.71 E-value=1.5e-17 Score=122.22 Aligned_cols=65 Identities=26% Similarity=0.256 Sum_probs=59.1
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCCChhhhhccCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCC
Q 024441 61 LRPDLKRGLLTEAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKLLKMGIDPVTH 126 (267)
Q Consensus 61 L~p~~~~~~WT~eED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~knRw~~~l~~~~~k~~~~~~~~ 126 (267)
++|.+++++||+|||++|+++|.+||.+|..||++|||||++|||+||+.++++.++. ++++.+.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~-g~~~~~~ 67 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC-GLDKETP 67 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS-CTTCCCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc-CCCCCcc
Confidence 5789999999999999999999999999999999999999999999999999998766 6555443
No 15
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.70 E-value=3.7e-18 Score=120.96 Aligned_cols=57 Identities=26% Similarity=0.441 Sum_probs=54.3
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCCchhchhhcCccCCcccccccccccCCCCC
Q 024441 9 KLGVKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLK 66 (267)
Q Consensus 9 k~~ikkg~WT~eED~~L~~~v~~~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~p~~~ 66 (267)
.|.+++++||+|||++|+++|.+||..+|..||+.|+ +||+.||++||.++|+|.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCS-SSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcc-CCCHHHHHHHHHHHcCCccC
Confidence 5789999999999999999999999889999999998 99999999999999999875
No 16
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.69 E-value=5e-18 Score=116.95 Aligned_cols=52 Identities=44% Similarity=0.892 Sum_probs=49.6
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCCchhchhhcCccCCcccccccccccCCC
Q 024441 12 VKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYLRPD 64 (267)
Q Consensus 12 ikkg~WT~eED~~L~~~v~~~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~p~ 64 (267)
+++|+||+|||++|+++|.+||..+|..||+.|+ +||+.||++||.++|+|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 5899999999999999999999888999999997 999999999999999984
No 17
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.68 E-value=7.6e-18 Score=135.39 Aligned_cols=83 Identities=20% Similarity=0.288 Sum_probs=77.0
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCCchhchhhc---CccCCcccccccccccC-----CCCCCC-CCCHHHHHHHH
Q 024441 9 KLGVKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAG---LRRCGKSCRLRWTNYLR-----PDLKRG-LLTEAEEQLVI 79 (267)
Q Consensus 9 k~~ikkg~WT~eED~~L~~~v~~~g~~~W~~IA~~~~---~~Rt~~QCr~Rw~~~L~-----p~~~~~-~WT~eED~~Ll 79 (267)
++..++++||+|||+.|+++|.+||.++|..|++.++ .+||+.||++||+++|. |.++++ +|+++|+.+|+
T Consensus 12 ~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv~ 91 (121)
T 2juh_A 12 SQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVL 91 (121)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHHH
Confidence 5677899999999999999999999889999998752 38999999999999998 999999 89999999999
Q ss_pred HHHHHhCCChhh
Q 024441 80 DLHARLGNRWSK 91 (267)
Q Consensus 80 ~lv~~~G~~W~~ 91 (267)
+++..+|++|.+
T Consensus 92 ~~h~~~gn~~~~ 103 (121)
T 2juh_A 92 AAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHccchhc
Confidence 999999999987
No 18
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.67 E-value=8.5e-18 Score=115.72 Aligned_cols=52 Identities=33% Similarity=0.700 Sum_probs=48.2
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCCchhchhhcCccCCcccccccccccCCC
Q 024441 12 VKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYLRPD 64 (267)
Q Consensus 12 ikkg~WT~eED~~L~~~v~~~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~p~ 64 (267)
+++++||+|||++|+++|.+||..+|..||+.|+ +||+.||++||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 5799999999999999999999879999999998 999999999999999984
No 19
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.66 E-value=5.1e-17 Score=115.08 Aligned_cols=55 Identities=20% Similarity=0.379 Sum_probs=51.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CChhhhhccCCCCCHHHHHHHHHHHHHHHH
Q 024441 62 RPDLKRGLLTEAEEQLVIDLHARLG-NRWSKIAARLPGRTDNEIKNHWNTHIKKKL 116 (267)
Q Consensus 62 ~p~~~~~~WT~eED~~Ll~lv~~~G-~~W~~IA~~lpgRT~~q~knRw~~~l~~~~ 116 (267)
+|.+++++||+|||++|+++|.+|| ++|..||+.|+|||+.||++||+++|++.+
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i 58 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPS 58 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCcc
Confidence 5788999999999999999999999 699999999999999999999999988754
No 20
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.64 E-value=6.8e-17 Score=130.02 Aligned_cols=80 Identities=21% Similarity=0.248 Sum_probs=72.7
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCCchhchhhc---CccCCccccccccccc-----CCCCCCCCCCHHH-HHHHH
Q 024441 9 KLGVKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAG---LRRCGKSCRLRWTNYL-----RPDLKRGLLTEAE-EQLVI 79 (267)
Q Consensus 9 k~~ikkg~WT~eED~~L~~~v~~~g~~~W~~IA~~~~---~~Rt~~QCr~Rw~~~L-----~p~~~~~~WT~eE-D~~Ll 79 (267)
+...++++||+|||+.|+++|++||.++|..|++.+. .+||+.||++||++++ +|.++++.|+++| +.+|+
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~ 105 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVL 105 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHH
Confidence 4456899999999999999999999989999998641 3899999999999999 8999999999999 89999
Q ss_pred HHHHHhCCC
Q 024441 80 DLHARLGNR 88 (267)
Q Consensus 80 ~lv~~~G~~ 88 (267)
++++.+|++
T Consensus 106 ~~h~~~g~~ 114 (122)
T 2roh_A 106 AAQAYWSVD 114 (122)
T ss_dssp HHHHHHHSS
T ss_pred HHHHHHhhH
Confidence 999999975
No 21
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.64 E-value=1.8e-16 Score=109.01 Aligned_cols=50 Identities=28% Similarity=0.510 Sum_probs=46.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-ChhhhhccCCCCCHHHHHHHHHHHHHH
Q 024441 65 LKRGLLTEAEEQLVIDLHARLGN-RWSKIAARLPGRTDNEIKNHWNTHIKK 114 (267)
Q Consensus 65 ~~~~~WT~eED~~Ll~lv~~~G~-~W~~IA~~lpgRT~~q~knRw~~~l~~ 114 (267)
+++++||+|||++|+++|.+||. +|..||+.|||||+.||++||+++|++
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 46899999999999999999997 999999999999999999999999875
No 22
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.64 E-value=4.3e-17 Score=118.70 Aligned_cols=63 Identities=21% Similarity=0.269 Sum_probs=57.7
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCCchhchhhcC-ccCCcccccccccccCCCCCCCCCC
Q 024441 9 KLGVKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGL-RRCGKSCRLRWTNYLRPDLKRGLLT 71 (267)
Q Consensus 9 k~~ikkg~WT~eED~~L~~~v~~~g~~~W~~IA~~~~~-~Rt~~QCr~Rw~~~L~p~~~~~~WT 71 (267)
++..++++||+|||++|+++|.+||..+|..||+.|+. +||+.||++||.++|+|.+.++..+
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 56778999999999999999999998899999999865 8999999999999999999887653
No 23
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.63 E-value=3.3e-16 Score=113.96 Aligned_cols=61 Identities=26% Similarity=0.312 Sum_probs=55.9
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhC-CChhhhhccCC--CCCHHHHHHHHHHHHHHHHhhCC
Q 024441 60 YLRPDLKRGLLTEAEEQLVIDLHARLG-NRWSKIAARLP--GRTDNEIKNHWNTHIKKKLLKMG 120 (267)
Q Consensus 60 ~L~p~~~~~~WT~eED~~Ll~lv~~~G-~~W~~IA~~lp--gRT~~q~knRw~~~l~~~~~k~~ 120 (267)
..++..++++||+|||++|+++|.+|| ++|..||..|+ |||+.||++||+++|++.+.+..
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~ 66 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSD 66 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCC
Confidence 356778899999999999999999999 69999999999 99999999999999999877654
No 24
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.63 E-value=3.2e-16 Score=107.83 Aligned_cols=50 Identities=36% Similarity=0.706 Sum_probs=47.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-ChhhhhccCCCCCHHHHHHHHHHHHHH
Q 024441 65 LKRGLLTEAEEQLVIDLHARLGN-RWSKIAARLPGRTDNEIKNHWNTHIKK 114 (267)
Q Consensus 65 ~~~~~WT~eED~~Ll~lv~~~G~-~W~~IA~~lpgRT~~q~knRw~~~l~~ 114 (267)
+++++||+|||++|+++|.+||. +|..||+.|+|||+.|||+||.++|++
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 47899999999999999999996 699999999999999999999998875
No 25
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.62 E-value=1.1e-16 Score=113.59 Aligned_cols=56 Identities=18% Similarity=0.395 Sum_probs=52.2
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCCchhchhhcCccCCcccccccccccCCCC
Q 024441 9 KLGVKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDL 65 (267)
Q Consensus 9 k~~ikkg~WT~eED~~L~~~v~~~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~p~~ 65 (267)
.+.+++++||+|||++|+++|.+||..+|..||+.|+ +||+.||++||.++|.+..
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~r~~~~l~~~~ 58 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYFSGPS 58 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHHTTCSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhC-CCCHHHHHHHHHHHccCCC
Confidence 3688999999999999999999999889999999998 9999999999999998754
No 26
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.61 E-value=1e-16 Score=115.38 Aligned_cols=56 Identities=25% Similarity=0.368 Sum_probs=49.7
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCCCchhchhhc-CccCCcccccccccccCCCCC
Q 024441 11 GVKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAG-LRRCGKSCRLRWTNYLRPDLK 66 (267)
Q Consensus 11 ~ikkg~WT~eED~~L~~~v~~~g~~~W~~IA~~~~-~~Rt~~QCr~Rw~~~L~p~~~ 66 (267)
..+|++||+|||++|+++|.+||..+|..||+.++ .+||+.||++||+++++|.++
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 45899999999999999999999989999998754 379999999999999998764
No 27
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.60 E-value=7.9e-16 Score=109.11 Aligned_cols=53 Identities=17% Similarity=0.279 Sum_probs=49.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CChhhhhccCCCCCHHHHHHHHHHHHHH
Q 024441 62 RPDLKRGLLTEAEEQLVIDLHARLG-NRWSKIAARLPGRTDNEIKNHWNTHIKK 114 (267)
Q Consensus 62 ~p~~~~~~WT~eED~~Ll~lv~~~G-~~W~~IA~~lpgRT~~q~knRw~~~l~~ 114 (267)
.+.+.+++||+|||++|+++|++|| ++|.+||++|||||+.||++||+.+|.+
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence 4678899999999999999999999 7999999999999999999999987754
No 28
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.60 E-value=1e-15 Score=105.81 Aligned_cols=49 Identities=29% Similarity=0.380 Sum_probs=46.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhC-CChhhhhccCC--CCCHHHHHHHHHHHHHH
Q 024441 66 KRGLLTEAEEQLVIDLHARLG-NRWSKIAARLP--GRTDNEIKNHWNTHIKK 114 (267)
Q Consensus 66 ~~~~WT~eED~~Ll~lv~~~G-~~W~~IA~~lp--gRT~~q~knRw~~~l~~ 114 (267)
++++||+|||++|+++|.+|| ++|..||..|+ |||+.||++||.++++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 478999999999999999999 69999999999 99999999999998874
No 29
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=2.2e-15 Score=111.23 Aligned_cols=58 Identities=22% Similarity=0.235 Sum_probs=53.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC------CChhhhhccCCCCCHHHHHHHHHHHHHHHHhhC
Q 024441 62 RPDLKRGLLTEAEEQLVIDLHARLG------NRWSKIAARLPGRTDNEIKNHWNTHIKKKLLKM 119 (267)
Q Consensus 62 ~p~~~~~~WT~eED~~Ll~lv~~~G------~~W~~IA~~lpgRT~~q~knRw~~~l~~~~~k~ 119 (267)
+|.+++++||+|||++|+++|.+|| ++|.+||++|+|||+.||++||+.+|.+.++.+
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g 66 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAG 66 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcC
Confidence 5788999999999999999999999 689999999999999999999999998876554
No 30
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1.8e-16 Score=114.39 Aligned_cols=58 Identities=22% Similarity=0.373 Sum_probs=52.9
Q ss_pred cCCCCccCCCCHHHHHHHHHHHHHhCCCCCchhchhhcCccCCcccccccccccCCCCCCC
Q 024441 8 DKLGVKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRG 68 (267)
Q Consensus 8 ~k~~ikkg~WT~eED~~L~~~v~~~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~p~~~~~ 68 (267)
.+|.+++++||+|||++|+++|..||. +|..||+ ++ +||+.||+.||.++|+|.++++
T Consensus 3 L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~-gRt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 3 SGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-II-GRTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp CSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HH-SSCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-cc-CcCHHHHHHHHHHHhChHhcCC
Confidence 579999999999999999999999996 8999999 54 6999999999999999877654
No 31
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=3.5e-16 Score=115.48 Aligned_cols=61 Identities=23% Similarity=0.363 Sum_probs=56.0
Q ss_pred cCCCCccCCCCHHHHHHHHHHHHHhCC-----CCCchhchhhcCccCCcccccccccccCCCCCCCC
Q 024441 8 DKLGVKKGPWTAEEDKKLINFILTNGQ-----CCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGL 69 (267)
Q Consensus 8 ~k~~ikkg~WT~eED~~L~~~v~~~g~-----~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~p~~~~~~ 69 (267)
.+|.+++++||+|||++|+++|.+||. .+|..||+.|+ +||+.||+.||+++|.+.++.+.
T Consensus 2 s~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 2 SSGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCC
Confidence 478999999999999999999999996 78999999998 99999999999999988776654
No 32
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.56 E-value=3.4e-15 Score=107.35 Aligned_cols=52 Identities=27% Similarity=0.431 Sum_probs=47.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC-CChhhhhccCC--CCCHHHHHHHHHHHHHHHH
Q 024441 65 LKRGLLTEAEEQLVIDLHARLG-NRWSKIAARLP--GRTDNEIKNHWNTHIKKKL 116 (267)
Q Consensus 65 ~~~~~WT~eED~~Ll~lv~~~G-~~W~~IA~~lp--gRT~~q~knRw~~~l~~~~ 116 (267)
.++++||+|||++|+++|.+|| ++|..||+.+| |||+.|||+||++++++.+
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl 63 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence 4788999999999999999999 58999999865 9999999999999988753
No 33
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.55 E-value=9.6e-16 Score=108.05 Aligned_cols=52 Identities=23% Similarity=0.353 Sum_probs=48.1
Q ss_pred CCCccCCCCHHHHHHHHHHHHHhCCCCCchhchhhcCccCCccccccccccc
Q 024441 10 LGVKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYL 61 (267)
Q Consensus 10 ~~ikkg~WT~eED~~L~~~v~~~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L 61 (267)
..+.+++||+|||++|+++|.+||..+|..||+.|+.+||+.||++||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 4567999999999999999999998899999999976899999999999875
No 34
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.54 E-value=1.3e-15 Score=123.16 Aligned_cols=75 Identities=17% Similarity=0.327 Sum_probs=69.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCChhhhhccCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCcCccccccc
Q 024441 62 RPDLKRGLLTEAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKLLKMGIDPVTHEPLHKETKAE 136 (267)
Q Consensus 62 ~p~~~~~~WT~eED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~knRw~~~l~~~~~k~~~~~~~~~~l~~~~~~~ 136 (267)
.+..++++||+|||++|+++|.+||.+|..||..|||||+.||+.||.++|.+.+.+++|++++++.|.......
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~ 80 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEY 80 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999999999999999999999999999999999999888766544
No 35
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.54 E-value=8e-15 Score=103.30 Aligned_cols=50 Identities=28% Similarity=0.393 Sum_probs=46.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC-CChhhhhccCC-CCCHHHHHHHHHHHH
Q 024441 63 PDLKRGLLTEAEEQLVIDLHARLG-NRWSKIAARLP-GRTDNEIKNHWNTHI 112 (267)
Q Consensus 63 p~~~~~~WT~eED~~Ll~lv~~~G-~~W~~IA~~lp-gRT~~q~knRw~~~l 112 (267)
..+.+++||++||++|+++|++|| ++|..||++|+ |||+.||++||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 456688999999999999999999 89999999999 999999999998754
No 36
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.53 E-value=1.2e-15 Score=105.42 Aligned_cols=50 Identities=24% Similarity=0.398 Sum_probs=46.4
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCCchhchhhcC-ccCCcccccccccccC
Q 024441 13 KKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGL-RRCGKSCRLRWTNYLR 62 (267)
Q Consensus 13 kkg~WT~eED~~L~~~v~~~g~~~W~~IA~~~~~-~Rt~~QCr~Rw~~~L~ 62 (267)
++++||+|||++|+++|.+||..+|..||+.++. +||+.||++||.+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 5899999999999999999998899999999865 6999999999999874
No 37
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.53 E-value=1.1e-15 Score=119.38 Aligned_cols=74 Identities=28% Similarity=0.495 Sum_probs=67.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-ChhhhhccCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCcCcccccccC
Q 024441 64 DLKRGLLTEAEEQLVIDLHARLGN-RWSKIAARLPGRTDNEIKNHWNTHIKKKLLKMGIDPVTHEPLHKETKAED 137 (267)
Q Consensus 64 ~~~~~~WT~eED~~Ll~lv~~~G~-~W~~IA~~lpgRT~~q~knRw~~~l~~~~~k~~~~~~~~~~l~~~~~~~~ 137 (267)
++++++||+|||++|+++|.+||. +|..||..|||||+.||+.||..+|.+.+.+++|++++++.|.......+
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G 75 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLG 75 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhC
Confidence 367899999999999999999996 79999999999999999999999999999999999999998887655443
No 38
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.50 E-value=2.4e-15 Score=110.34 Aligned_cols=58 Identities=21% Similarity=0.289 Sum_probs=53.5
Q ss_pred cCCCCccCCCCHHHHHHHHHHHHHhCCCCCchhchhhcCccCCcccccccccccCCCCCC
Q 024441 8 DKLGVKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKR 67 (267)
Q Consensus 8 ~k~~ikkg~WT~eED~~L~~~v~~~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~p~~~~ 67 (267)
..|.+++++||+|||++|+++|..||. +|..||+.|+ +||+.||+.||.++|.+.++.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~-~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIG-SRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhc
Confidence 468999999999999999999999996 8999999998 999999999999998876655
No 39
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.25 E-value=1.7e-15 Score=115.69 Aligned_cols=56 Identities=25% Similarity=0.185 Sum_probs=53.2
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhCCChhhhhccCCCCCHHHHHHHHHHHHHHH
Q 024441 60 YLRPDLKRGLLTEAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKKK 115 (267)
Q Consensus 60 ~L~p~~~~~~WT~eED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~knRw~~~l~~~ 115 (267)
.++|.+++++||+|||++|+++|.+||++|..||..|||||++||++||+.++++.
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 56789999999999999999999999999999999999999999999999988875
No 40
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.49 E-value=3.8e-15 Score=117.05 Aligned_cols=71 Identities=21% Similarity=0.317 Sum_probs=65.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-ChhhhhccCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCcCcccccccC
Q 024441 67 RGLLTEAEEQLVIDLHARLGN-RWSKIAARLPGRTDNEIKNHWNTHIKKKLLKMGIDPVTHEPLHKETKAED 137 (267)
Q Consensus 67 ~~~WT~eED~~Ll~lv~~~G~-~W~~IA~~lpgRT~~q~knRw~~~l~~~~~k~~~~~~~~~~l~~~~~~~~ 137 (267)
+++||+|||++|+++|.+||. +|..||..|||||+.||+.||.++|.+.+.+++|++.++..|.......+
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G 72 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYG 72 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhC
Confidence 579999999999999999995 89999999999999999999999999999999999999988877655443
No 41
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.48 E-value=7.5e-15 Score=119.27 Aligned_cols=71 Identities=24% Similarity=0.520 Sum_probs=65.9
Q ss_pred CCCCCHHHHHHHHHHHHHhC-CChhhhhccCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCcCcccccccC
Q 024441 67 RGLLTEAEEQLVIDLHARLG-NRWSKIAARLPGRTDNEIKNHWNTHIKKKLLKMGIDPVTHEPLHKETKAED 137 (267)
Q Consensus 67 ~~~WT~eED~~Ll~lv~~~G-~~W~~IA~~lpgRT~~q~knRw~~~l~~~~~k~~~~~~~~~~l~~~~~~~~ 137 (267)
+|+||+|||++|+++|.+|| ++|..||..|||||+.||+.||.++|.+.+.+++|++.+++.|.......+
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G 73 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLG 73 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHC
Confidence 68999999999999999999 789999999999999999999999999999999999999998887665443
No 42
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.43 E-value=1.1e-13 Score=101.99 Aligned_cols=51 Identities=14% Similarity=0.264 Sum_probs=47.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC----CChhhhhccCCCCCHHHHHHHHHHHHH
Q 024441 63 PDLKRGLLTEAEEQLVIDLHARLG----NRWSKIAARLPGRTDNEIKNHWNTHIK 113 (267)
Q Consensus 63 p~~~~~~WT~eED~~Ll~lv~~~G----~~W~~IA~~lpgRT~~q~knRw~~~l~ 113 (267)
+...+++||.+||.+|++++++|| ++|.+||++|||||++||++||+.+++
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 456788999999999999999999 689999999999999999999988765
No 43
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.42 E-value=4.4e-14 Score=104.07 Aligned_cols=59 Identities=19% Similarity=0.243 Sum_probs=47.4
Q ss_pred CccccCCCCccCCCCHHHHHHHHHHHHHhCCCCCchhchhhcCccCCcccccccccccCCCCC
Q 024441 4 QPCCDKLGVKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLK 66 (267)
Q Consensus 4 ~~~~~k~~ikkg~WT~eED~~L~~~v~~~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~p~~~ 66 (267)
......|.+++|+||+|||++|+++|.+||.. |..||+.+ +||+.||+.||.. |....+
T Consensus 13 ~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~k-W~~IA~~l--gRt~~q~knRw~~-L~~~~~ 71 (73)
T 2llk_A 13 NLYFQGDRNHVGKYTPEEIEKLKELRIKHGND-WATIGAAL--GRSASSVKDRCRL-MKDTCN 71 (73)
T ss_dssp ------CCCCCCSSCHHHHHHHHHHHHHHSSC-HHHHHHHH--TSCHHHHHHHHHH-CSCCCS
T ss_pred eeeecCCCCCCCCCCHHHHHHHHHHHHHHCCC-HHHHHHHh--CCCHHHHHHHHHH-HHHHcc
Confidence 34457899999999999999999999999965 99999998 6999999999984 544443
No 44
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.38 E-value=1.4e-13 Score=102.98 Aligned_cols=52 Identities=21% Similarity=0.326 Sum_probs=48.4
Q ss_pred ccCCCCccCCCCHHHHHHHHHHHHHhCCCCCchhchhhcCccCCcccccccccc
Q 024441 7 CDKLGVKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNY 60 (267)
Q Consensus 7 ~~k~~ikkg~WT~eED~~L~~~v~~~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~ 60 (267)
+.++...+++||+|||++|+++|.+|| .+|.+||++|+ +||+.||+.||.++
T Consensus 11 ~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~-~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 11 KSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG-SRTQDECILHFLRL 62 (79)
T ss_dssp CCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHS-SCCHHHHHHHHTTS
T ss_pred CccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHh
Confidence 356677899999999999999999999 88999999998 89999999999998
No 45
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.38 E-value=2.5e-13 Score=101.47 Aligned_cols=48 Identities=21% Similarity=0.298 Sum_probs=44.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCChhhhhccCCCCCHHHHHHHHHHH
Q 024441 64 DLKRGLLTEAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTH 111 (267)
Q Consensus 64 ~~~~~~WT~eED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~knRw~~~ 111 (267)
...+++||+|||++|+++|++||++|.+||++|++||+.||++||..+
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 456789999999999999999999999999999999999999999654
No 46
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.37 E-value=1.6e-13 Score=107.77 Aligned_cols=80 Identities=21% Similarity=0.284 Sum_probs=68.3
Q ss_pred cCCCCccCCCCHHHHHHHHHHHHHhCCCCCchhchhhc---CccCCccccccccccc-----CCCCCCCCCCHHHHHH-H
Q 024441 8 DKLGVKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAG---LRRCGKSCRLRWTNYL-----RPDLKRGLLTEAEEQL-V 78 (267)
Q Consensus 8 ~k~~ikkg~WT~eED~~L~~~v~~~g~~~W~~IA~~~~---~~Rt~~QCr~Rw~~~L-----~p~~~~~~WT~eED~~-L 78 (267)
.++..++++||+|||+.|+++|.+||.++|..|++.++ .+||..+|++||++++ +|.++++.-+++|-.. +
T Consensus 7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv 86 (105)
T 2aje_A 7 DPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRV 86 (105)
T ss_dssp --CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHH
Confidence 45678999999999999999999999989999998652 3899999999999998 7999999888887755 7
Q ss_pred HHHHHHhCC
Q 024441 79 IDLHARLGN 87 (267)
Q Consensus 79 l~lv~~~G~ 87 (267)
+++...+|+
T Consensus 87 ~~~~~~~~~ 95 (105)
T 2aje_A 87 LNAHGYWTQ 95 (105)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877663
No 47
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.34 E-value=4.8e-13 Score=100.85 Aligned_cols=69 Identities=23% Similarity=0.390 Sum_probs=59.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCchhchh----hcCccCCccccccccccc-----CCCCCCC-CCCHHHHHHHHHHHHH
Q 024441 15 GPWTAEEDKKLINFILTNGQCCWRAVPKL----AGLRRCGKSCRLRWTNYL-----RPDLKRG-LLTEAEEQLVIDLHAR 84 (267)
Q Consensus 15 g~WT~eED~~L~~~v~~~g~~~W~~IA~~----~~~~Rt~~QCr~Rw~~~L-----~p~~~~~-~WT~eED~~Ll~lv~~ 84 (267)
.+||+|||+.|+++|++||.++|..|++. ++ +||+.||++||+++| +|.++++ +..++....++.+.+.
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~-~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCT-TSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccC-CCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 48999999999999999999899999985 55 899999999999987 6776665 4777777888888764
No 48
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.32 E-value=2.1e-12 Score=91.75 Aligned_cols=50 Identities=20% Similarity=0.329 Sum_probs=46.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCChhhhh---ccCCCCCHHHHHHHHHHHHHH
Q 024441 65 LKRGLLTEAEEQLVIDLHARLGNRWSKIA---ARLPGRTDNEIKNHWNTHIKK 114 (267)
Q Consensus 65 ~~~~~WT~eED~~Ll~lv~~~G~~W~~IA---~~lpgRT~~q~knRw~~~l~~ 114 (267)
.++.+||+|||+.|+++|++||.+|..|+ .++++||...+|+||+++++.
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 36789999999999999999999999999 578999999999999988765
No 49
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.31 E-value=1e-12 Score=116.06 Aligned_cols=67 Identities=19% Similarity=0.406 Sum_probs=54.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCC------hhhhhccCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCcCc
Q 024441 63 PDLKRGLLTEAEEQLVIDLHARLGNR------WSKIAARLPGRTDNEIKNHWNTHIKKKLLKMGIDPVTHEPLH 130 (267)
Q Consensus 63 p~~~~~~WT~eED~~Ll~lv~~~G~~------W~~IA~~lpgRT~~q~knRw~~~l~~~~~k~~~~~~~~~~l~ 130 (267)
+.+++++||+|||++|+++|+++|++ |..||+.|||||++|||+||+.+|++++... |...++..+.
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~v-y~~ded~~Li 76 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYV-YEVDKFGKLV 76 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCE-ECBCTTSCBC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccc-cccCcchhhh
Confidence 35678899999999999999999975 9999999999999999999999999987633 5555554443
No 50
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.99 E-value=1.7e-13 Score=104.61 Aligned_cols=54 Identities=22% Similarity=0.450 Sum_probs=50.3
Q ss_pred cCCCCccCCCCHHHHHHHHHHHHHhCCCCCchhchhhcCccCCcccccccccccCC
Q 024441 8 DKLGVKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYLRP 63 (267)
Q Consensus 8 ~k~~ikkg~WT~eED~~L~~~v~~~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~p 63 (267)
.-|.+++|+||+|||++|+++|..||. +|..||+.|+ +||+.||+.||.++|..
T Consensus 10 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~-gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 10 GRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVG-SKTVSQCKNFYFNYKKR 63 (89)
Confidence 568899999999999999999999996 7999999998 99999999999998863
No 51
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.31 E-value=2.9e-13 Score=99.74 Aligned_cols=55 Identities=16% Similarity=0.401 Sum_probs=49.8
Q ss_pred ccCCCCccCCCCHHHHHHHHHHHHHhC---CCCCchhchhhcCccCCcccccccccccC
Q 024441 7 CDKLGVKKGPWTAEEDKKLINFILTNG---QCCWRAVPKLAGLRRCGKSCRLRWTNYLR 62 (267)
Q Consensus 7 ~~k~~ikkg~WT~eED~~L~~~v~~~g---~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~ 62 (267)
-.++.+.+++||++||++|+++|..|| ...|.+||++|+ +||..||+.||.+++.
T Consensus 11 ~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 11 KERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLVS 68 (73)
T ss_dssp CCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHHS
T ss_pred ccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 367788999999999999999999999 357999999998 9999999999998764
No 52
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.31 E-value=2.8e-12 Score=96.70 Aligned_cols=49 Identities=24% Similarity=0.492 Sum_probs=45.1
Q ss_pred CCCCHHHHHHHHHHHHHhCC-Chhhhhcc----CCCCCHHHHHHHHHHHHHHHH
Q 024441 68 GLLTEAEEQLVIDLHARLGN-RWSKIAAR----LPGRTDNEIKNHWNTHIKKKL 116 (267)
Q Consensus 68 ~~WT~eED~~Ll~lv~~~G~-~W~~IA~~----lpgRT~~q~knRw~~~l~~~~ 116 (267)
.+||+|||++|+++|++||. +|+.|++. |+|||+.+||+||+++++...
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~ 54 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 54 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence 47999999999999999996 99999995 899999999999999998653
No 53
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.29 E-value=2.4e-12 Score=103.36 Aligned_cols=54 Identities=26% Similarity=0.485 Sum_probs=49.9
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCC-Chhhhhcc----CCCCCHHHHHHHHHHHHHH
Q 024441 61 LRPDLKRGLLTEAEEQLVIDLHARLGN-RWSKIAAR----LPGRTDNEIKNHWNTHIKK 114 (267)
Q Consensus 61 L~p~~~~~~WT~eED~~Ll~lv~~~G~-~W~~IA~~----lpgRT~~q~knRw~~~l~~ 114 (267)
+.+..++++||.|||+.|+++|++||. +|+.|++. |+|||+.+||+||+++++.
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~ 69 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT 69 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 566788999999999999999999996 99999998 4999999999999999984
No 54
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.29 E-value=6.2e-12 Score=98.65 Aligned_cols=53 Identities=23% Similarity=0.423 Sum_probs=48.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC-ChhhhhccC----CCCCHHHHHHHHHHHHHHH
Q 024441 63 PDLKRGLLTEAEEQLVIDLHARLGN-RWSKIAARL----PGRTDNEIKNHWNTHIKKK 115 (267)
Q Consensus 63 p~~~~~~WT~eED~~Ll~lv~~~G~-~W~~IA~~l----pgRT~~q~knRw~~~l~~~ 115 (267)
+..++++||.|||++|+++|++||. +|+.|++.+ +|||+.+||+||+++++..
T Consensus 9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~ 66 (105)
T 2aje_A 9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA 66 (105)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 4568899999999999999999995 999999965 8999999999999999754
No 55
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.27 E-value=5.5e-12 Score=96.97 Aligned_cols=50 Identities=22% Similarity=0.401 Sum_probs=45.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhC----CChhhhhccCCCCCHHHHHHHHHHHHHHH
Q 024441 66 KRGLLTEAEEQLVIDLHARLG----NRWSKIAARLPGRTDNEIKNHWNTHIKKK 115 (267)
Q Consensus 66 ~~~~WT~eED~~Ll~lv~~~G----~~W~~IA~~lpgRT~~q~knRw~~~l~~~ 115 (267)
.+++||.|||++|++++++|| ++|.+||+.|||||++||++||+.++...
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI 60 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 467899999999999999996 67999999999999999999999988775
No 56
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.23 E-value=5.3e-12 Score=101.48 Aligned_cols=54 Identities=28% Similarity=0.497 Sum_probs=47.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCC-Chhhhhcc----CCCCCHHHHHHHHHHHHHHH
Q 024441 62 RPDLKRGLLTEAEEQLVIDLHARLGN-RWSKIAAR----LPGRTDNEIKNHWNTHIKKK 115 (267)
Q Consensus 62 ~p~~~~~~WT~eED~~Ll~lv~~~G~-~W~~IA~~----lpgRT~~q~knRw~~~l~~~ 115 (267)
....++++||.|||+.|+++|++||. +|+.|++. |++||+.+||+||+++++..
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~ 84 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA 84 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 34557889999999999999999995 99999996 48999999999999999643
No 57
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=99.01 E-value=4e-10 Score=86.37 Aligned_cols=67 Identities=21% Similarity=0.235 Sum_probs=60.2
Q ss_pred CcccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCChhhhhccC-----CCCCHHHHHHHHHHHHHHHHhhCC
Q 024441 50 GKSCRLRWTNYLRPDLKRGLLTEAEEQLVIDLHARLGNRWSKIAARL-----PGRTDNEIKNHWNTHIKKKLLKMG 120 (267)
Q Consensus 50 ~~QCr~Rw~~~L~p~~~~~~WT~eED~~Ll~lv~~~G~~W~~IA~~l-----pgRT~~q~knRw~~~l~~~~~k~~ 120 (267)
..=+.++|.++|.+ .+||.||+..|++|+++||.+|..|+..+ ++||..++|+||..+.++.+...+
T Consensus 17 ~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r~ 88 (93)
T 3hm5_A 17 PVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA 88 (93)
T ss_dssp CCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 35678899999976 79999999999999999999999999999 589999999999999998877653
No 58
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=4.1e-10 Score=79.83 Aligned_cols=47 Identities=13% Similarity=0.096 Sum_probs=43.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCChhhhhccCCCCCHHHHHHHHHHHH
Q 024441 66 KRGLLTEAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHI 112 (267)
Q Consensus 66 ~~~~WT~eED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~knRw~~~l 112 (267)
...+||++|++++++++.+||.+|..||..||+||..||+.+|+...
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTK 57 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence 45689999999999999999999999999999999999999997643
No 59
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.99 E-value=5.6e-11 Score=91.34 Aligned_cols=48 Identities=17% Similarity=0.352 Sum_probs=43.4
Q ss_pred ccCCCCHHHHHHHHHHHHHhC---CCCCchhchhhcCccCCccccccccccc
Q 024441 13 KKGPWTAEEDKKLINFILTNG---QCCWRAVPKLAGLRRCGKSCRLRWTNYL 61 (267)
Q Consensus 13 kkg~WT~eED~~L~~~v~~~g---~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L 61 (267)
.+++||+|||++|.+++..|+ ...|.+||+.|+ +||..||+.||.+++
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILV 57 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 478999999999999999997 457999999998 999999999998764
No 60
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.97 E-value=5.8e-10 Score=81.78 Aligned_cols=56 Identities=20% Similarity=0.243 Sum_probs=47.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC----CChhhhhccCCCCCHHHHHHHHHHHHHHHHhhCC
Q 024441 64 DLKRGLLTEAEEQLVIDLHARLG----NRWSKIAARLPGRTDNEIKNHWNTHIKKKLLKMG 120 (267)
Q Consensus 64 ~~~~~~WT~eED~~Ll~lv~~~G----~~W~~IA~~lpgRT~~q~knRw~~~l~~~~~k~~ 120 (267)
..+.+.||.||+++|.+++++|+ .+|.+||+++ |||..+|++||+.+........+
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d~~~~~G 64 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSVTCSPG 64 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSCCCCSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHhcCccCC
Confidence 34567899999999999999997 5699999998 99999999999888766433333
No 61
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.73 E-value=3.4e-09 Score=75.06 Aligned_cols=52 Identities=12% Similarity=0.119 Sum_probs=45.4
Q ss_pred cCCCCccCCCCHHHHHHHHHHHHHhCCCCCchhchhhcCccCCccccccccccc
Q 024441 8 DKLGVKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYL 61 (267)
Q Consensus 8 ~k~~ikkg~WT~eED~~L~~~v~~~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L 61 (267)
++..-..++||++|++++.+++..|| .+|..||+.++ +||..||+.+|....
T Consensus 6 ~~~r~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~-~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 6 SGDRQFMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLE-RKSVPDCVLYYYLTK 57 (61)
T ss_dssp CCCCSCCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCT-TSCHHHHHHHHHHHT
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHhc
Confidence 34445679999999999999999999 58999999998 999999999987543
No 62
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.72 E-value=1.1e-08 Score=89.63 Aligned_cols=49 Identities=14% Similarity=0.246 Sum_probs=45.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCChhhhhccCCCCCHHHHHHHHHHHHHH
Q 024441 66 KRGLLTEAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKK 114 (267)
Q Consensus 66 ~~~~WT~eED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~knRw~~~l~~ 114 (267)
...+||.||..++++++.+||++|..||+.+++||..|||++|+...++
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999999999999999987765
No 63
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.69 E-value=2.8e-09 Score=75.62 Aligned_cols=48 Identities=17% Similarity=0.256 Sum_probs=43.0
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCCchhch---hhcCccCCcccccccccccC
Q 024441 13 KKGPWTAEEDKKLINFILTNGQCCWRAVPK---LAGLRRCGKSCRLRWTNYLR 62 (267)
Q Consensus 13 kkg~WT~eED~~L~~~v~~~g~~~W~~IA~---~~~~~Rt~~QCr~Rw~~~L~ 62 (267)
++.+||+|||+.|++.|++||. +|..|+. .+. +||.....+||++...
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~-~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQK-GRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCT-TCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCcc-CcccchHHHHHHHHHh
Confidence 7899999999999999999996 8999994 444 8999999999998654
No 64
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.65 E-value=5.1e-09 Score=76.70 Aligned_cols=51 Identities=14% Similarity=0.179 Sum_probs=44.1
Q ss_pred CCCccCCCCHHHHHHHHHHHHHhC---CCCCchhchhhcCccCCcccccccccccC
Q 024441 10 LGVKKGPWTAEEDKKLINFILTNG---QCCWRAVPKLAGLRRCGKSCRLRWTNYLR 62 (267)
Q Consensus 10 ~~ikkg~WT~eED~~L~~~v~~~g---~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~ 62 (267)
.+.+++.||.|||++|.+|+.+|+ ...|.+||+.+| ||..||+.||..+..
T Consensus 4 ~~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lg--Rt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 4 GSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG--RSVTDVTTKAKQLKD 57 (72)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT--SCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhC--CCHHHHHHHHHHHHH
Confidence 345788999999999999999997 356999999985 999999999986543
No 65
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.61 E-value=4e-08 Score=72.04 Aligned_cols=48 Identities=23% Similarity=0.251 Sum_probs=42.6
Q ss_pred CCCCCHHHHHHHHHHHHHhC----CChhhhhccCCCCCHHHHHHHHHHHHHH
Q 024441 67 RGLLTEAEEQLVIDLHARLG----NRWSKIAARLPGRTDNEIKNHWNTHIKK 114 (267)
Q Consensus 67 ~~~WT~eED~~Ll~lv~~~G----~~W~~IA~~lpgRT~~q~knRw~~~l~~ 114 (267)
...||.+|+++|..++..|+ .+|.+||..+||||..+|+.||..+++.
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG 59 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 45799999999999999998 3699999999999999999999876443
No 66
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.49 E-value=6.7e-08 Score=93.32 Aligned_cols=47 Identities=15% Similarity=0.274 Sum_probs=42.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCChhhhhccCCCCCHHHHHHHHHHHHHH
Q 024441 68 GLLTEAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKK 114 (267)
Q Consensus 68 ~~WT~eED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~knRw~~~l~~ 114 (267)
..||.+|-.++++++.+||.+|..||+.+..||..|||++|....++
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kkr 427 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 427 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999754443
No 67
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.49 E-value=1.1e-07 Score=66.99 Aligned_cols=47 Identities=19% Similarity=0.428 Sum_probs=42.0
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCC-hhhhhc-cCCCCCHHHHHHHHHHHHH
Q 024441 67 RGLLTEAEEQLVIDLHARL--------GNR-WSKIAA-RLPGRTDNEIKNHWNTHIK 113 (267)
Q Consensus 67 ~~~WT~eED~~Ll~lv~~~--------G~~-W~~IA~-~lpgRT~~q~knRw~~~l~ 113 (267)
+.+||+|||.+|++.|.++ |++ |..+++ .+|++|-.++|+||...|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 443 999999 7999999999999987664
No 68
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.43 E-value=3.8e-08 Score=69.31 Aligned_cols=48 Identities=23% Similarity=0.452 Sum_probs=43.0
Q ss_pred cCCCCHHHHHHHHHHHHHh--------CCCCCchhch-hhcCccCCcccccccccccC
Q 024441 14 KGPWTAEEDKKLINFILTN--------GQCCWRAVPK-LAGLRRCGKSCRLRWTNYLR 62 (267)
Q Consensus 14 kg~WT~eED~~L~~~v~~~--------g~~~W~~IA~-~~~~~Rt~~QCr~Rw~~~L~ 62 (267)
|.+||+|||+.|++.|.+| |..-|+.+|+ .++ ++|..+||+||.++|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~-~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCC-CCCHHHHHHHHHHHcc
Confidence 5789999999999999999 5556999999 676 9999999999999874
No 69
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.43 E-value=4.7e-08 Score=71.67 Aligned_cols=48 Identities=21% Similarity=0.406 Sum_probs=43.2
Q ss_pred cCCCCHHHHHHHHHHHHHhCC---CCCchhchhhcCccCCcccccccccccC
Q 024441 14 KGPWTAEEDKKLINFILTNGQ---CCWRAVPKLAGLRRCGKSCRLRWTNYLR 62 (267)
Q Consensus 14 kg~WT~eED~~L~~~v~~~g~---~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~ 62 (267)
...||.+|+++|.+++..|+. ..|..||..|| +||..+|+.||..++.
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPR 58 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHh
Confidence 468999999999999999975 46999999998 8999999999997754
No 70
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.29 E-value=1.7e-07 Score=82.16 Aligned_cols=49 Identities=22% Similarity=0.346 Sum_probs=44.8
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCCchhchhhcCccCCcccccccccccC
Q 024441 12 VKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYLR 62 (267)
Q Consensus 12 ikkg~WT~eED~~L~~~v~~~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~ 62 (267)
...++||+||++++++++.+|| .+|..||+.++ +||..||+.+|.++..
T Consensus 131 k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~Vg-TKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIG-NKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 3578999999999999999999 67999999999 9999999999988763
No 71
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.17 E-value=4.1e-06 Score=59.47 Aligned_cols=48 Identities=17% Similarity=0.204 Sum_probs=44.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCChhhhhc-cCCCCCHHHHHHHHHH
Q 024441 63 PDLKRGLLTEAEEQLVIDLHARLGNRWSKIAA-RLPGRTDNEIKNHWNT 110 (267)
Q Consensus 63 p~~~~~~WT~eED~~Ll~lv~~~G~~W~~IA~-~lpgRT~~q~knRw~~ 110 (267)
|.+....||+||-.+..+++.+||.+|..|++ .|++||..+|...|+.
T Consensus 5 p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 5 SSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYY 53 (63)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred CCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhc
Confidence 56778899999999999999999999999999 5899999999988864
No 72
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.15 E-value=2.3e-06 Score=64.74 Aligned_cols=47 Identities=17% Similarity=0.349 Sum_probs=43.6
Q ss_pred CCCHHHHHHHHHHHHHhCC---ChhhhhccCCCCCHHHHHHHHHHHHHHH
Q 024441 69 LLTEAEEQLVIDLHARLGN---RWSKIAARLPGRTDNEIKNHWNTHIKKK 115 (267)
Q Consensus 69 ~WT~eED~~Ll~lv~~~G~---~W~~IA~~lpgRT~~q~knRw~~~l~~~ 115 (267)
.||.|||..||...++-|. .|..||+.|.+|+.+||++||+.+++-.
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf 84 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLF 84 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 5999999999999999996 7999999999999999999999888754
No 73
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.15 E-value=4.7e-07 Score=66.13 Aligned_cols=43 Identities=26% Similarity=0.347 Sum_probs=38.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCC----ChhhhhccCCCCCHHHHHHHHH
Q 024441 67 RGLLTEAEEQLVIDLHARLGN----RWSKIAARLPGRTDNEIKNHWN 109 (267)
Q Consensus 67 ~~~WT~eED~~Ll~lv~~~G~----~W~~IA~~lpgRT~~q~knRw~ 109 (267)
...||.+|+++|..+++.|+. +|.+||+.+||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 457999999999999999984 7999999999999999999984
No 74
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=98.11 E-value=2.6e-06 Score=78.06 Aligned_cols=102 Identities=21% Similarity=0.203 Sum_probs=80.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCchhchhhcCccCCccccc-------ccccc---------------------------
Q 024441 15 GPWTAEEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRL-------RWTNY--------------------------- 60 (267)
Q Consensus 15 g~WT~eED~~L~~~v~~~g~~~W~~IA~~~~~~Rt~~QCr~-------Rw~~~--------------------------- 60 (267)
+.||..+...++.++.+||..+|..||..|+ ++|...++. ||..+
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~-~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l 189 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVE-GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL 189 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSST-TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999999997 787765532 22110
Q ss_pred ---------------c-CCCCCCCCCCHHHHHHHHHHHHHhCC----Chhhhhc------------cCCCCCHHHHHHHH
Q 024441 61 ---------------L-RPDLKRGLLTEAEEQLVIDLHARLGN----RWSKIAA------------RLPGRTDNEIKNHW 108 (267)
Q Consensus 61 ---------------L-~p~~~~~~WT~eED~~Ll~lv~~~G~----~W~~IA~------------~lpgRT~~q~knRw 108 (267)
+ -+..+...||.+||..||-++.+||- .|..|.. ++..||+.+|..|.
T Consensus 190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc 269 (304)
T 1ofc_X 190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC 269 (304)
T ss_dssp HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence 0 02234457999999999999999994 5999962 34679999999999
Q ss_pred HHHHHHHHh
Q 024441 109 NTHIKKKLL 117 (267)
Q Consensus 109 ~~~l~~~~~ 117 (267)
..+++-..+
T Consensus 270 ~tLi~~iek 278 (304)
T 1ofc_X 270 NTLITLIER 278 (304)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999876433
No 75
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=97.31 E-value=5.7e-07 Score=64.56 Aligned_cols=45 Identities=18% Similarity=0.401 Sum_probs=41.6
Q ss_pred CCCHHHHHHHHHHHHHhCC---ChhhhhccCCCCCHHHHHHHHHHHHHH
Q 024441 69 LLTEAEEQLVIDLHARLGN---RWSKIAARLPGRTDNEIKNHWNTHIKK 114 (267)
Q Consensus 69 ~WT~eED~~Ll~lv~~~G~---~W~~IA~~lpgRT~~q~knRw~~~l~~ 114 (267)
.||.|||..|+..+++-|. .|..||+.| +|+++||++||..+++-
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~L 63 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKL 63 (70)
Confidence 4999999999999999996 799999999 99999999999987753
No 76
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.98 E-value=1.2e-06 Score=64.02 Aligned_cols=44 Identities=14% Similarity=0.302 Sum_probs=38.8
Q ss_pred cCCCCHHHHHHHHHHHHHhCCC---CCchhchhhcCccCCcccccccc
Q 024441 14 KGPWTAEEDKKLINFILTNGQC---CWRAVPKLAGLRRCGKSCRLRWT 58 (267)
Q Consensus 14 kg~WT~eED~~L~~~v~~~g~~---~W~~IA~~~~~~Rt~~QCr~Rw~ 58 (267)
...||.+|+++|.+++..|+.. .|.+||+.|| +||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHH
Confidence 5689999999999999999743 7999999998 899999999985
No 77
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.86 E-value=4.2e-05 Score=58.32 Aligned_cols=60 Identities=23% Similarity=0.295 Sum_probs=51.2
Q ss_pred ccccccCCCCCCCCCCHHHHHHHHHHHHHhCCChhhhhccCC-----CCCHHHHHHHHHHHHHHHHhhC
Q 024441 56 RWTNYLRPDLKRGLLTEAEEQLVIDLHARLGNRWSKIAARLP-----GRTDNEIKNHWNTHIKKKLLKM 119 (267)
Q Consensus 56 Rw~~~L~p~~~~~~WT~eED~~Ll~lv~~~G~~W~~IA~~lp-----gRT~~q~knRw~~~l~~~~~k~ 119 (267)
.|..+|. ...||.||-..|++++++|+-+|..|+..+. .||-.++|.||..+.++.++..
T Consensus 23 EY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r 87 (93)
T 4iej_A 23 EYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp HHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 4555664 3689999999999999999999999998873 7999999999999988876653
No 78
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.83 E-value=7e-06 Score=58.27 Aligned_cols=50 Identities=14% Similarity=0.096 Sum_probs=44.5
Q ss_pred cCCCCccCCCCHHHHHHHHHHHHHhCCCCCchhch-hhcCccCCccccccccc
Q 024441 8 DKLGVKKGPWTAEEDKKLINFILTNGQCCWRAVPK-LAGLRRCGKSCRLRWTN 59 (267)
Q Consensus 8 ~k~~ikkg~WT~eED~~L~~~v~~~g~~~W~~IA~-~~~~~Rt~~QCr~Rw~~ 59 (267)
..|.++...||+||-++..+++.+|| .+|..|++ .++ +|+..||..-|..
T Consensus 3 ~~p~~~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~-~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 3 SGSSGIEKCWTEDEVKRFVKGLRQYG-KNFFRIRKELLP-NKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCCSCCHHHHHHHHHHHHHTC-SCHHHHHHHSCT-TSCHHHHHHHHHH
T ss_pred CCCCcCCCCcCHHHHHHHHHHHHHhC-ccHHHHHHHHcC-CCcHHHHHHHHhc
Confidence 46888999999999999999999999 57999998 577 9999999887754
No 79
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.67 E-value=8e-05 Score=53.86 Aligned_cols=43 Identities=16% Similarity=0.199 Sum_probs=40.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCCChhhhhc-cCCCCCHHHHHHHHH
Q 024441 67 RGLLTEAEEQLVIDLHARLGNRWSKIAA-RLPGRTDNEIKNHWN 109 (267)
Q Consensus 67 ~~~WT~eED~~Ll~lv~~~G~~W~~IA~-~lpgRT~~q~knRw~ 109 (267)
...||++|-.+..+++.+||.+|..|++ .||+||..+|...|.
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY 51 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYY 51 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHH
Confidence 4589999999999999999999999999 589999999999886
No 80
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.64 E-value=7.2e-05 Score=57.17 Aligned_cols=44 Identities=16% Similarity=0.117 Sum_probs=41.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCChhhhhccCCCCCHHHHHHHHHH
Q 024441 67 RGLLTEAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNT 110 (267)
Q Consensus 67 ~~~WT~eED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~knRw~~ 110 (267)
...||++|-.+..+++..||.+|..||..||+||..+|-..|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhc
Confidence 35799999999999999999999999999999999999998864
No 81
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.49 E-value=3.4e-05 Score=74.52 Aligned_cols=46 Identities=22% Similarity=0.363 Sum_probs=42.6
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCCchhchhhcCccCCcccccccccc
Q 024441 13 KKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNY 60 (267)
Q Consensus 13 kkg~WT~eED~~L~~~v~~~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~ 60 (267)
...+||.+|-+++++++.+|| .+|..||+.++ +||..||+..|.++
T Consensus 379 ~~~~WT~eE~~~f~~al~~yG-kdw~~IA~~Vg-TKT~~Qvk~fy~~~ 424 (482)
T 2xag_B 379 CNARWTTEEQLLAVQAIRKYG-RDFQAISDVIG-NKSVVQVKNFFVNY 424 (482)
T ss_dssp CCSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHS-SCCHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 468999999999999999999 58999999999 99999999988764
No 82
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.14 E-value=0.00012 Score=55.98 Aligned_cols=48 Identities=13% Similarity=0.202 Sum_probs=41.4
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCCchhchhhc----CccCCccccccccccc
Q 024441 13 KKGPWTAEEDKKLINFILTNGQCCWRAVPKLAG----LRRCGKSCRLRWTNYL 61 (267)
Q Consensus 13 kkg~WT~eED~~L~~~v~~~g~~~W~~IA~~~~----~~Rt~~QCr~Rw~~~L 61 (267)
+..+||.||+..|.+++++|+ ..|..|+..+. .+||..+.+.||..+.
T Consensus 29 ~~~~WTkEETd~Lf~L~~~fd-lRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~ 80 (93)
T 3hm5_A 29 HDDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp CBTTBCHHHHHHHHHHHHHTT-TCHHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhC-CCeeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence 448999999999999999999 56999998873 2699999999998654
No 83
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.10 E-value=0.0004 Score=51.66 Aligned_cols=49 Identities=14% Similarity=0.376 Sum_probs=40.6
Q ss_pred CCCCCHHHHHHHHHHHHHhC----------CChhhhhccC----CCCCHHHHHHHHHHHHHHH
Q 024441 67 RGLLTEAEEQLVIDLHARLG----------NRWSKIAARL----PGRTDNEIKNHWNTHIKKK 115 (267)
Q Consensus 67 ~~~WT~eED~~Ll~lv~~~G----------~~W~~IA~~l----pgRT~~q~knRw~~~l~~~ 115 (267)
...||.+|-.+||+++..+. ..|..||..| -.||+.||+.+|.++.+..
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Y 66 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEF 66 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 45799999999999987632 1499999987 3799999999999877764
No 84
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.10 E-value=0.00015 Score=52.42 Aligned_cols=45 Identities=11% Similarity=0.059 Sum_probs=39.9
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCCchhch-hhcCccCCccccccccc
Q 024441 13 KKGPWTAEEDKKLINFILTNGQCCWRAVPK-LAGLRRCGKSCRLRWTN 59 (267)
Q Consensus 13 kkg~WT~eED~~L~~~v~~~g~~~W~~IA~-~~~~~Rt~~QCr~Rw~~ 59 (267)
....||++|-++..+++.+|| .+|..|++ .++ +|+..||..-|..
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~-~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYG-KDFNDIRQDFLP-WKSLTSIIEYYYM 52 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTC-SCHHHHHHTTCS-SSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhC-ccHHHHHHHHcC-CCCHHHHHHHHHh
Confidence 467899999999999999999 57999999 587 9999999887753
No 85
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.03 E-value=0.00018 Score=55.00 Aligned_cols=44 Identities=11% Similarity=0.264 Sum_probs=39.7
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCchhchhhcCccCCccccccccc
Q 024441 14 KGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTN 59 (267)
Q Consensus 14 kg~WT~eED~~L~~~v~~~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~ 59 (267)
...||++|.++..+++..|| .+|..||+.++ +||..||...|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~-~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLE-RKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCT-TCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcC-CCCHHHHHHHHhc
Confidence 46899999999999999999 57999999998 9999999987753
No 86
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=97.00 E-value=0.00094 Score=57.27 Aligned_cols=46 Identities=13% Similarity=0.159 Sum_probs=36.6
Q ss_pred CCCHHHHHHHHHHHHHhC-CChhhhhc--cC------------CCCCHHHHHHHHHHHHHH
Q 024441 69 LLTEAEEQLVIDLHARLG-NRWSKIAA--RL------------PGRTDNEIKNHWNTHIKK 114 (267)
Q Consensus 69 ~WT~eED~~Ll~lv~~~G-~~W~~IA~--~l------------pgRT~~q~knRw~~~l~~ 114 (267)
.||.+||..|+..+.+|| ++|..|.. .| ..+++..+..|-..+|+-
T Consensus 136 ~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~ 196 (211)
T 4b4c_A 136 DWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKL 196 (211)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHHH
Confidence 599999999999999999 89999954 21 124577899998766663
No 87
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=96.94 E-value=0.0011 Score=62.26 Aligned_cols=104 Identities=16% Similarity=0.238 Sum_probs=77.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCchhchhhcCccCCccccc-------ccccc---------------------------
Q 024441 15 GPWTAEEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRL-------RWTNY--------------------------- 60 (267)
Q Consensus 15 g~WT~eED~~L~~~v~~~g~~~W~~IA~~~~~~Rt~~QCr~-------Rw~~~--------------------------- 60 (267)
+.||.-+=..++.+..+||..+-..||..|+++++...++. ||..+
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L 203 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEAL 203 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999889999988854566644431 11110
Q ss_pred -------------c--C--CC-CCCCCCCHHHHHHHHHHHHHhC----CChhhhhcc------------CCCCCHHHHHH
Q 024441 61 -------------L--R--PD-LKRGLLTEAEEQLVIDLHARLG----NRWSKIAAR------------LPGRTDNEIKN 106 (267)
Q Consensus 61 -------------L--~--p~-~~~~~WT~eED~~Ll~lv~~~G----~~W~~IA~~------------lpgRT~~q~kn 106 (267)
| . +. .+...||.+||..||-++.+|| +.|..|-.. +..||+..|..
T Consensus 204 ~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~r 283 (374)
T 2y9y_A 204 RRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELAR 283 (374)
T ss_dssp HHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHH
T ss_pred HHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHH
Confidence 0 0 11 1345699999999999999999 459999433 35699999999
Q ss_pred HHHHHHHHHHhh
Q 024441 107 HWNTHIKKKLLK 118 (267)
Q Consensus 107 Rw~~~l~~~~~k 118 (267)
|...+++-..+.
T Consensus 284 Rc~tLi~~IeKE 295 (374)
T 2y9y_A 284 RGNTLLQCLEKE 295 (374)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH
Confidence 999999765443
No 88
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.91 E-value=8.9e-05 Score=55.30 Aligned_cols=49 Identities=24% Similarity=0.569 Sum_probs=39.2
Q ss_pred ccCCCCHHHHHHHHHHHHHhCC---------CCCchhchhh---cCccCCccccccccccc
Q 024441 13 KKGPWTAEEDKKLINFILTNGQ---------CCWRAVPKLA---GLRRCGKSCRLRWTNYL 61 (267)
Q Consensus 13 kkg~WT~eED~~L~~~v~~~g~---------~~W~~IA~~~---~~~Rt~~QCr~Rw~~~L 61 (267)
+...||.+|-..|+.+...... .-|..||..| |-.||+.||+.+|.+..
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 5678999999999999876321 1599999765 45799999999998753
No 89
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=95.38 E-value=0.00055 Score=49.08 Aligned_cols=47 Identities=11% Similarity=0.194 Sum_probs=40.6
Q ss_pred cCCCCHHHHHHHHHHHHHhCC--CCCchhchhhcCccCCcccccccccccC
Q 024441 14 KGPWTAEEDKKLINFILTNGQ--CCWRAVPKLAGLRRCGKSCRLRWTNYLR 62 (267)
Q Consensus 14 kg~WT~eED~~L~~~v~~~g~--~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~ 62 (267)
--.||.|||..|+...++.|. .-|..||+.++ |++.|+.+||+..+.
T Consensus 14 vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~Ln--ks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 14 IILWTRNDDRVILLECQKRGPSSKTFAYLAAKLD--KNPNQVSERFQQLMK 62 (70)
Confidence 346999999999999999886 36999998885 999999999987653
No 90
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.08 E-value=0.0023 Score=48.42 Aligned_cols=47 Identities=17% Similarity=0.357 Sum_probs=40.8
Q ss_pred ccCCCCHHHHHHHHHHHHHhCC--CCCchhchhhcCccCCcccccccccc
Q 024441 13 KKGPWTAEEDKKLINFILTNGQ--CCWRAVPKLAGLRRCGKSCRLRWTNY 60 (267)
Q Consensus 13 kkg~WT~eED~~L~~~v~~~g~--~~W~~IA~~~~~~Rt~~QCr~Rw~~~ 60 (267)
+--.||.|||..|+.+.++.|. ..|..||+.++ +|++.|..+|++..
T Consensus 32 ~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~-Nks~nqV~~RFq~L 80 (95)
T 1ug2_A 32 KVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFREL 80 (95)
T ss_dssp CCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHHH
T ss_pred EEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHc-cCCHHHHHHHHHHH
Confidence 3446999999999999999875 36999999998 89999999999753
No 91
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=94.46 E-value=0.12 Score=36.52 Aligned_cols=47 Identities=19% Similarity=0.146 Sum_probs=39.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCC---hhhhhccC--CCCCHHHHHHHHHHHH
Q 024441 66 KRGLLTEAEEQLVIDLHARLGNR---WSKIAARL--PGRTDNEIKNHWNTHI 112 (267)
Q Consensus 66 ~~~~WT~eED~~Ll~lv~~~G~~---W~~IA~~l--pgRT~~q~knRw~~~l 112 (267)
.+-.||+|.-+..+++|..+|.. +..|.+.| +|.|..+|+.|.+.+.
T Consensus 6 ~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR 57 (64)
T 1irz_A 6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR 57 (64)
T ss_dssp SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 45579999999999999999954 78998876 7999999999976543
No 92
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=93.60 E-value=0.12 Score=47.06 Aligned_cols=48 Identities=17% Similarity=0.214 Sum_probs=41.9
Q ss_pred CCCCCHHHHHHHHHHHHHhC-CChhhhhccCCCCCHHHHHHHHHHHHHH
Q 024441 67 RGLLTEAEEQLVIDLHARLG-NRWSKIAARLPGRTDNEIKNHWNTHIKK 114 (267)
Q Consensus 67 ~~~WT~eED~~Ll~lv~~~G-~~W~~IA~~lpgRT~~q~knRw~~~l~~ 114 (267)
-+.||..+....+.++.+|| ..|..||..|+|+|...|+..+.....+
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~r 158 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWER 158 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 34699999999999999999 5799999999999999998776655544
No 93
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=93.59 E-value=0.06 Score=45.83 Aligned_cols=38 Identities=26% Similarity=0.476 Sum_probs=31.6
Q ss_pred ccccCCCCccCCCCHHHHHHHHHHHHHhCCCCCchhch
Q 024441 5 PCCDKLGVKKGPWTAEEDKKLINFILTNGQCCWRAVPK 42 (267)
Q Consensus 5 ~~~~k~~ikkg~WT~eED~~L~~~v~~~g~~~W~~IA~ 42 (267)
|++.++.-....||++||..|+..|.+||-.+|..|-.
T Consensus 125 ~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~ 162 (211)
T 4b4c_A 125 PCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKM 162 (211)
T ss_dssp CSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHh
Confidence 44455555566799999999999999999999999965
No 94
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=93.53 E-value=0.024 Score=43.00 Aligned_cols=49 Identities=12% Similarity=0.210 Sum_probs=39.7
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCCchhchhhc----CccCCccccccccccc
Q 024441 12 VKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAG----LRRCGKSCRLRWTNYL 61 (267)
Q Consensus 12 ikkg~WT~eED~~L~~~v~~~g~~~W~~IA~~~~----~~Rt~~QCr~Rw~~~L 61 (267)
++...||.||...|..++.+|. ..|-.|+.... ..|+.-+..+||..+.
T Consensus 28 L~~~~WT~eETd~LfdLc~~fd-lRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~ 80 (93)
T 4iej_A 28 LHDDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTT-TCHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHHcC-CCeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence 3457899999999999999999 56999997653 2588888888887653
No 95
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=87.90 E-value=0.34 Score=43.39 Aligned_cols=26 Identities=19% Similarity=0.358 Sum_probs=24.2
Q ss_pred CCCHHHHHHHHHHHHHhC-CChhhhhc
Q 024441 69 LLTEAEEQLVIDLHARLG-NRWSKIAA 94 (267)
Q Consensus 69 ~WT~eED~~Ll~lv~~~G-~~W~~IA~ 94 (267)
.|+.+||..||..|.+|| ++|.+|..
T Consensus 170 ~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 170 NWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 499999999999999999 89999964
No 96
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=87.88 E-value=0.26 Score=44.19 Aligned_cols=28 Identities=32% Similarity=0.646 Sum_probs=26.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCchhch
Q 024441 15 GPWTAEEDKKLINFILTNGQCCWRAVPK 42 (267)
Q Consensus 15 g~WT~eED~~L~~~v~~~g~~~W~~IA~ 42 (267)
..|+.+||..|+..|.+||.++|..|..
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 4599999999999999999999999974
No 97
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=77.97 E-value=2.4 Score=29.73 Aligned_cols=45 Identities=13% Similarity=0.131 Sum_probs=32.7
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCC--CCchhchhhcC-ccCCccccc
Q 024441 11 GVKKGPWTAEEDKKLINFILTNGQC--CWRAVPKLAGL-RRCGKSCRL 55 (267)
Q Consensus 11 ~ikkg~WT~eED~~L~~~v~~~g~~--~W~~IA~~~~~-~Rt~~QCr~ 55 (267)
...+-.||+|..++.+.||...|.. -++.|.+.|+. +.|..++.-
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkS 51 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVAS 51 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHH
Confidence 3467899999999999999999933 26788887762 345444443
No 98
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=59.91 E-value=14 Score=27.73 Aligned_cols=40 Identities=18% Similarity=0.385 Sum_probs=29.5
Q ss_pred HHHHHHHHHhCC--------ChhhhhccCCC-CC---HHHHHHHHHHHHHHH
Q 024441 76 QLVIDLHARLGN--------RWSKIAARLPG-RT---DNEIKNHWNTHIKKK 115 (267)
Q Consensus 76 ~~Ll~lv~~~G~--------~W~~IA~~lpg-RT---~~q~knRw~~~l~~~ 115 (267)
-.|..+|.+.|+ .|..||..|.- .+ ..++|..|..+|-+-
T Consensus 47 ~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~y 98 (107)
T 2lm1_A 47 YTLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHPF 98 (107)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 456677777773 69999999822 22 578899999888764
No 99
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=59.74 E-value=11 Score=28.93 Aligned_cols=40 Identities=18% Similarity=0.368 Sum_probs=30.1
Q ss_pred HHHHHHHHHhCC--------ChhhhhccCCCC----CHHHHHHHHHHHHHHH
Q 024441 76 QLVIDLHARLGN--------RWSKIAARLPGR----TDNEIKNHWNTHIKKK 115 (267)
Q Consensus 76 ~~Ll~lv~~~G~--------~W~~IA~~lpgR----T~~q~knRw~~~l~~~ 115 (267)
-.|..+|.+.|+ .|..||..|.-- ...++|..|..+|.+.
T Consensus 43 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~y 94 (117)
T 2jrz_A 43 YSLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPY 94 (117)
T ss_dssp HHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 457778888874 699999998221 1678999999888874
No 100
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=58.71 E-value=14 Score=24.41 Aligned_cols=43 Identities=21% Similarity=0.213 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHHHHHhCCChhhhhccCCCCCHHHHHHHHHHHHHH
Q 024441 70 LTEAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKK 114 (267)
Q Consensus 70 WT~eED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~knRw~~~l~~ 114 (267)
+++ .+..++.++-..|-.+.+||..+ |-+...|+.+....+++
T Consensus 16 L~~-~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~~ 58 (70)
T 2o8x_A 16 LTT-DQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDA 58 (70)
T ss_dssp SCH-HHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred CCH-HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 454 44455556667788999999999 88999999887665554
No 101
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=58.64 E-value=6.1 Score=30.43 Aligned_cols=39 Identities=18% Similarity=0.310 Sum_probs=30.2
Q ss_pred HHHHHHHHhCC--------ChhhhhccCCCCCHHHHHHHHHHHHHHH
Q 024441 77 LVIDLHARLGN--------RWSKIAARLPGRTDNEIKNHWNTHIKKK 115 (267)
Q Consensus 77 ~Ll~lv~~~G~--------~W~~IA~~lpgRT~~q~knRw~~~l~~~ 115 (267)
.|..+|.+.|+ .|..||..|.--.+..+|..|..+|-+.
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~y 99 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPY 99 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSHH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 47777777774 6999999883333789999999888764
No 102
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=56.13 E-value=15 Score=28.45 Aligned_cols=40 Identities=23% Similarity=0.407 Sum_probs=29.8
Q ss_pred HHHHHHHHHhCC--------ChhhhhccCCC--CC--HHHHHHHHHHHHHHH
Q 024441 76 QLVIDLHARLGN--------RWSKIAARLPG--RT--DNEIKNHWNTHIKKK 115 (267)
Q Consensus 76 ~~Ll~lv~~~G~--------~W~~IA~~lpg--RT--~~q~knRw~~~l~~~ 115 (267)
-+|..+|.+.|+ .|..|+..|.- -+ +.++|.+|..+|-+.
T Consensus 45 y~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~y 96 (122)
T 2eqy_A 45 FQLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNPY 96 (122)
T ss_dssp HHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 457777888774 69999998822 12 468899999988874
No 103
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=56.00 E-value=53 Score=24.48 Aligned_cols=86 Identities=19% Similarity=0.173 Sum_probs=50.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCchhchhhcCccCCccccc---cccccc--CCCCCCCCCCHHHHHHHHHHHHHhC-CC
Q 024441 15 GPWTAEEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRL---RWTNYL--RPDLKRGLLTEAEEQLVIDLHARLG-NR 88 (267)
Q Consensus 15 g~WT~eED~~L~~~v~~~g~~~W~~IA~~~~~~Rt~~QCr~---Rw~~~L--~p~~~~~~WT~eED~~Ll~lv~~~G-~~ 88 (267)
...|.++-..++.++. -| ..-.+||+.+| .+...++. +|..+- ...-.....+++++..|+.+ ...+ -.
T Consensus 5 ~~~s~~~r~~i~~~~~-~G-~s~~~ia~~lg--is~~Tv~r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~-~~~~~~s 79 (141)
T 1u78_A 5 SALSDTERAQLDVMKL-LN-VSLHEMSRKIS--RSRHCIRVYLKDPVSYGTSKRAPRRKALSVRDERNVIRA-ASNSCKT 79 (141)
T ss_dssp CCCCHHHHHHHHHHHH-TT-CCHHHHHHHHT--CCHHHHHHHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHH-HHHCCCC
T ss_pred ccCCHHHHHHHHHHHH-cC-CCHHHHHHHHC--cCHHHHHHHHHcccccCCcCCCCCCCcCCHHHHHHHHHH-HhCCCCC
Confidence 3567888777777763 45 45689999888 43333322 222211 11112235888888888877 3333 34
Q ss_pred hhhhhccCCC--CCHHHHHH
Q 024441 89 WSKIAARLPG--RTDNEIKN 106 (267)
Q Consensus 89 W~~IA~~lpg--RT~~q~kn 106 (267)
-.+|+..+ | -+...|..
T Consensus 80 ~~~i~~~l-g~~~s~~tV~r 98 (141)
T 1u78_A 80 ARDIRNEL-QLSASKRTILN 98 (141)
T ss_dssp HHHHHHHT-TCCSCHHHHHH
T ss_pred HHHHHHHH-CCCccHHHHHH
Confidence 56788887 4 56666654
No 104
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=55.26 E-value=21 Score=33.18 Aligned_cols=45 Identities=22% Similarity=0.253 Sum_probs=37.3
Q ss_pred CCCCHHHHHHHHHHHHHhC-CChhhhhccCC-CCCHHHHHHHHHHHH
Q 024441 68 GLLTEAEEQLVIDLHARLG-NRWSKIAARLP-GRTDNEIKNHWNTHI 112 (267)
Q Consensus 68 ~~WT~eED~~Ll~lv~~~G-~~W~~IA~~lp-gRT~~q~knRw~~~l 112 (267)
+.||.-+=..++.++.+|| ..-..||..|. |+|...|+.......
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw 170 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFW 170 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHH
Confidence 4699999999999999999 56999999996 999999995443333
No 105
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=54.72 E-value=14 Score=25.20 Aligned_cols=44 Identities=23% Similarity=0.359 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHHHHH----hCCChhhhhccCCCCCHHHHHHHHHHHHHHH
Q 024441 70 LTEAEEQLVIDLHAR----LGNRWSKIAARLPGRTDNEIKNHWNTHIKKK 115 (267)
Q Consensus 70 WT~eED~~Ll~lv~~----~G~~W~~IA~~lpgRT~~q~knRw~~~l~~~ 115 (267)
.++.|- .++.+.-- .|..+.+||..+ |-+...|+.+....+++-
T Consensus 11 L~~~er-~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~kL 58 (73)
T 1ku3_A 11 LSEREA-MVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRKL 58 (73)
T ss_dssp SCHHHH-HHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred CCHHHH-HHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 444444 44445443 467899999999 999999999877666554
No 106
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=54.18 E-value=16 Score=28.33 Aligned_cols=40 Identities=13% Similarity=0.232 Sum_probs=30.0
Q ss_pred HHHHHHHHHhCC--------ChhhhhccCCC-C---CHHHHHHHHHHHHHHH
Q 024441 76 QLVIDLHARLGN--------RWSKIAARLPG-R---TDNEIKNHWNTHIKKK 115 (267)
Q Consensus 76 ~~Ll~lv~~~G~--------~W~~IA~~lpg-R---T~~q~knRw~~~l~~~ 115 (267)
-.|..+|.+.|+ .|.+||..|.- . ...++|..|..+|.+.
T Consensus 54 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~y 105 (125)
T 2cxy_A 54 FRLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFAF 105 (125)
T ss_dssp HHHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 457777777774 69999998822 2 2578899999988874
No 107
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=53.47 E-value=9 Score=29.94 Aligned_cols=40 Identities=18% Similarity=0.279 Sum_probs=30.4
Q ss_pred HHHHHHHHhCC--------ChhhhhccCCCCCHHHHHHHHHHHHHHHH
Q 024441 77 LVIDLHARLGN--------RWSKIAARLPGRTDNEIKNHWNTHIKKKL 116 (267)
Q Consensus 77 ~Ll~lv~~~G~--------~W~~IA~~lpgRT~~q~knRw~~~l~~~~ 116 (267)
.|..+|.+.|+ .|..||..|.--.+..+|..|..+|-+.-
T Consensus 52 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE 99 (123)
T 1kkx_A 52 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPYE 99 (123)
T ss_dssp HHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHHH
Confidence 46666777663 49999998833338999999999998853
No 108
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=52.23 E-value=19 Score=28.06 Aligned_cols=40 Identities=15% Similarity=0.279 Sum_probs=30.9
Q ss_pred HHHHHHHHHhCC--------ChhhhhccC--CCC---CHHHHHHHHHHHHHHH
Q 024441 76 QLVIDLHARLGN--------RWSKIAARL--PGR---TDNEIKNHWNTHIKKK 115 (267)
Q Consensus 76 ~~Ll~lv~~~G~--------~W~~IA~~l--pgR---T~~q~knRw~~~l~~~ 115 (267)
-.|..+|.+.|+ .|..||..| |.. ...++|..|..+|.+.
T Consensus 55 ~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~y 107 (128)
T 1c20_A 55 YELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPY 107 (128)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 457778888874 699999988 332 2678999999988874
No 109
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=49.88 E-value=14 Score=24.85 Aligned_cols=30 Identities=10% Similarity=0.143 Sum_probs=25.0
Q ss_pred hCCChhhhhccCCCCCHHHHHHHHHHHHHHH
Q 024441 85 LGNRWSKIAARLPGRTDNEIKNHWNTHIKKK 115 (267)
Q Consensus 85 ~G~~W~~IA~~lpgRT~~q~knRw~~~l~~~ 115 (267)
.|..+.+||..+ |-+...|+.+....+++-
T Consensus 24 ~g~s~~eIA~~l-gis~~tV~~~~~ra~~kL 53 (68)
T 2p7v_B 24 TDYTLEEVGKQF-DVTRERIRQIEAKALRKL 53 (68)
T ss_dssp SCCCHHHHHHHH-TCCHHHHHHHHHHHHHGG
T ss_pred CCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 467899999999 999999999887666553
No 110
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=49.68 E-value=18 Score=28.19 Aligned_cols=77 Identities=16% Similarity=0.283 Sum_probs=48.9
Q ss_pred ccCCCCHHHH--HHHHHHHHHhCCCCCchhchhhcCccCCcccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCC---
Q 024441 13 KKGPWTAEED--KKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLTEAEEQLVIDLHARLGN--- 87 (267)
Q Consensus 13 kkg~WT~eED--~~L~~~v~~~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~p~~~~~~WT~eED~~Ll~lv~~~G~--- 87 (267)
=+.+|.+.+. +.|.++....|.. -..|+. ++ +|. || --.|..+|.+.|+
T Consensus 6 ~~~r~~~~~~Fl~~L~~F~~~rGtp-l~~~P~-i~-gk~-----------lD------------L~~Ly~~V~~~GG~~~ 59 (121)
T 2rq5_A 6 LGRRWGPNVQRLACIKKHLRSQGIT-MDELPL-IG-GCE-----------LD------------LACFFRLINEMGGMQQ 59 (121)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHTTCC-CSSCCE-ET-TEE-----------CC------------HHHHHHHHHHTTSHHH
T ss_pred hhHhcCCcHHHHHHHHHHHHHcCCC-CCCCCc-CC-CEe-----------cc------------HHHHHHHHHHcCcHHH
Confidence 3567887765 4566666777742 444432 22 232 11 1457778888874
Q ss_pred -----ChhhhhccC--CCC---CHHHHHHHHHHHHHHH
Q 024441 88 -----RWSKIAARL--PGR---TDNEIKNHWNTHIKKK 115 (267)
Q Consensus 88 -----~W~~IA~~l--pgR---T~~q~knRw~~~l~~~ 115 (267)
.|..||..| |.- ....+|.+|..+|-+.
T Consensus 60 Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~Y 97 (121)
T 2rq5_A 60 VTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSY 97 (121)
T ss_dssp HHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHH
T ss_pred hcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHH
Confidence 699999988 322 2578899999888774
No 111
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=48.02 E-value=4.1 Score=31.40 Aligned_cols=39 Identities=15% Similarity=0.170 Sum_probs=28.5
Q ss_pred HHHHHHHHhCC-------CCCchhchhhcCccCCcccccccccccCC
Q 024441 24 KLINFILTNGQ-------CCWRAVPKLAGLRRCGKSCRLRWTNYLRP 63 (267)
Q Consensus 24 ~L~~~v~~~g~-------~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~p 63 (267)
+|..+|.+.|. ..|..||..++... +...+..|.++|.|
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~-~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISD-YQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCC-TTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCCh-HHHHHHHHHHHHHH
Confidence 46677777652 36999999998444 67788888887754
No 112
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=47.55 E-value=5.4 Score=31.25 Aligned_cols=57 Identities=12% Similarity=0.182 Sum_probs=40.4
Q ss_pred HHHHHHHHhCC-------CCCchhchhhcCccCC----cccccccccccCCCCCCCCCCHHHHHHHHHHHH
Q 024441 24 KLINFILTNGQ-------CCWRAVPKLAGLRRCG----KSCRLRWTNYLRPDLKRGLLTEAEEQLVIDLHA 83 (267)
Q Consensus 24 ~L~~~v~~~g~-------~~W~~IA~~~~~~Rt~----~QCr~Rw~~~L~p~~~~~~WT~eED~~Ll~lv~ 83 (267)
+|..+|.+.|. ..|..||..++...+. ...+..|.++|.|- ...+++|-..|.+-|.
T Consensus 46 ~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~Y---E~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 46 CFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSY---DSLSPEEHRRLEKEVL 113 (121)
T ss_dssp HHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHH---HHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHH---HCcCHHHHhhHHHHHH
Confidence 57778888763 4699999999754432 35577888888652 2478888888876654
No 113
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=47.21 E-value=20 Score=28.68 Aligned_cols=40 Identities=15% Similarity=0.292 Sum_probs=30.4
Q ss_pred HHHHHHHHHhCC--------ChhhhhccC--CCC---CHHHHHHHHHHHHHHH
Q 024441 76 QLVIDLHARLGN--------RWSKIAARL--PGR---TDNEIKNHWNTHIKKK 115 (267)
Q Consensus 76 ~~Ll~lv~~~G~--------~W~~IA~~l--pgR---T~~q~knRw~~~l~~~ 115 (267)
-.|..+|.+.|+ .|..||..| |.. ...++|..|..+|.+.
T Consensus 67 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~y 119 (145)
T 2kk0_A 67 FMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPY 119 (145)
T ss_dssp HHHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHH
T ss_pred HHHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHH
Confidence 457777887774 699999988 332 2678999999888875
No 114
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=45.93 E-value=24 Score=28.03 Aligned_cols=45 Identities=4% Similarity=0.088 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhC-CChhhhhccCCCCCHHHHHHHHHHHHHHHHhh
Q 024441 73 AEEQLVIDLHARLG-NRWSKIAARLPGRTDNEIKNHWNTHIKKKLLK 118 (267)
Q Consensus 73 eED~~Ll~lv~~~G-~~W~~IA~~lpgRT~~q~knRw~~~l~~~~~k 118 (267)
+-|..|+.+.++.| -.+..||+.+ |-|...|+.|.+.+....+.+
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~i~ 48 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGVIR 48 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCee
Confidence 45778888888877 4799999999 999999999998887776654
No 115
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=45.28 E-value=28 Score=24.72 Aligned_cols=40 Identities=23% Similarity=0.297 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhCCChhhhhccCCCCCHHHHHHHHHHHHHH
Q 024441 74 EEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKK 114 (267)
Q Consensus 74 ED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~knRw~~~l~~ 114 (267)
.+..++.++-..|-.-..||..+ |-+...|+.+....+++
T Consensus 41 ~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 80 (92)
T 3hug_A 41 EHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVRA 80 (92)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 33445556556678899999999 99999999887765544
No 116
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=44.11 E-value=12 Score=27.62 Aligned_cols=39 Identities=26% Similarity=0.486 Sum_probs=27.5
Q ss_pred HHHHHHHHHhC--------CChhhhhccC--CC-C-CHHHHHHHHHHHHHH
Q 024441 76 QLVIDLHARLG--------NRWSKIAARL--PG-R-TDNEIKNHWNTHIKK 114 (267)
Q Consensus 76 ~~Ll~lv~~~G--------~~W~~IA~~l--pg-R-T~~q~knRw~~~l~~ 114 (267)
-.|..+|.+.| +.|.+||..| |. - ...++|..|..+|.+
T Consensus 39 ~~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~ 89 (96)
T 2jxj_A 39 YALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYP 89 (96)
T ss_dssp HHHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHH
Confidence 34667777776 3699999987 22 1 267889999877765
No 117
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=43.41 E-value=20 Score=29.68 Aligned_cols=29 Identities=21% Similarity=0.375 Sum_probs=21.7
Q ss_pred CCCccCCCCHHHHHHHH--------HHHHHhCCCCCchhc
Q 024441 10 LGVKKGPWTAEEDKKLI--------NFILTNGQCCWRAVP 41 (267)
Q Consensus 10 ~~ikkg~WT~eED~~L~--------~~v~~~g~~~W~~IA 41 (267)
|.-..|-||+++|+.|. +++++|| |..|.
T Consensus 110 P~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG---~erie 146 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLKSNDQEQIRKLVKKHG---TGRME 146 (168)
T ss_dssp CTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHC---HHHHH
T ss_pred CCCCCCCCChhhHHHHHcCCHHHHHHHHHHhC---HHHHH
Confidence 34568999999999885 6777787 45554
No 118
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=43.32 E-value=7.1 Score=29.51 Aligned_cols=40 Identities=13% Similarity=0.239 Sum_probs=27.6
Q ss_pred HHHHHHHHhCC-------CCCchhchhhcCcc----CCcccccccccccCC
Q 024441 24 KLINFILTNGQ-------CCWRAVPKLAGLRR----CGKSCRLRWTNYLRP 63 (267)
Q Consensus 24 ~L~~~v~~~g~-------~~W~~IA~~~~~~R----t~~QCr~Rw~~~L~p 63 (267)
+|..+|.+.|. ..|.+||..++... .+.+.+..|.++|.|
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 46677776652 36999999988433 235667778888765
No 119
>2jvw_A Uncharacterized protein; solution structure, alpha helical protein, structural GE unknown function, PSI-2, protein structure initiative; NMR {Vibrio fischeri}
Probab=42.49 E-value=8.3 Score=28.51 Aligned_cols=45 Identities=13% Similarity=0.336 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhCCCCCchhchhhcCccCCcccccccccccCCCC-------CCCCCCHHHHHHHH
Q 024441 22 DKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDL-------KRGLLTEAEEQLVI 79 (267)
Q Consensus 22 D~~L~~~v~~~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~L~p~~-------~~~~WT~eED~~Ll 79 (267)
+..|.++|..|| |...++.+. ..|.. -+|++ ++.+|..+..+.|.
T Consensus 18 E~ilt~Lv~~YG---W~~L~~~i~-----I~CF~-----~~PSikSSLKFLRKTpWAR~KVE~lY 69 (88)
T 2jvw_A 18 QKLLTELVEHYG---WEELSYMVN-----INCFK-----KDPSIKSSLKFLRKTDWARERVENIY 69 (88)
T ss_dssp HHHHHHHHHHTC---HHHHHHHTT-----SSSTT-----SSCCHHHHHHHHHHSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC---HHHHHhhcc-----cccCC-----CCCchHHHHHHHhcCHhHHHHHHHHH
Confidence 467889999999 999988776 55654 35654 55678887766554
No 120
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=40.12 E-value=52 Score=22.12 Aligned_cols=42 Identities=24% Similarity=0.230 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHHHHHhCCChhhhhccCCCCCHHHHHHHHHHHHHH
Q 024441 70 LTEAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKK 114 (267)
Q Consensus 70 WT~eED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~knRw~~~l~~ 114 (267)
+|+.|-+.| .++ ..|-.-.+||..+ |-+...|+.+....+++
T Consensus 17 L~~~e~~vl-~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~k 58 (79)
T 1x3u_A 17 LSERERQVL-SAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMAK 58 (79)
T ss_dssp HCHHHHHHH-HHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHH-HHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 456555444 444 5677899999999 88999999888766554
No 121
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=37.06 E-value=48 Score=23.82 Aligned_cols=44 Identities=27% Similarity=0.215 Sum_probs=33.5
Q ss_pred CCCHHHHHHHHHHHHHhCCChhhhhccCCCCCHHHHHHHHHHHHHHH
Q 024441 69 LLTEAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKKK 115 (267)
Q Consensus 69 ~WT~eED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~knRw~~~l~~~ 115 (267)
..|+.|-+.|. ++ ..|..-.+||..+ |-+...|+.+....+++-
T Consensus 27 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL 70 (95)
T 3c57_A 27 GLTDQERTLLG-LL-SEGLTNKQIADRM-FLAEKTVKNYVSRLLAKL 70 (95)
T ss_dssp CCCHHHHHHHH-HH-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 46777765554 44 6788889999999 899999999887665553
No 122
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=35.64 E-value=45 Score=22.17 Aligned_cols=33 Identities=12% Similarity=0.136 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHhCCChhhhhccCCCCCHHHHH
Q 024441 72 EAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIK 105 (267)
Q Consensus 72 ~eED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~k 105 (267)
.-|...|.++...++++..+.|+.+ |=+...+.
T Consensus 18 ~~E~~~i~~aL~~~~gn~~~aA~~L-Gisr~tL~ 50 (63)
T 3e7l_A 18 EFEKIFIEEKLREYDYDLKRTAEEI-GIDLSNLY 50 (63)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHH-TCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHH
Confidence 3477888899999999999999988 65655443
No 123
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=35.57 E-value=63 Score=23.16 Aligned_cols=46 Identities=20% Similarity=0.229 Sum_probs=34.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCChhhhhccCCCCCHHHHHHHHHHHHHH
Q 024441 66 KRGLLTEAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKK 114 (267)
Q Consensus 66 ~~~~WT~eED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~knRw~~~l~~ 114 (267)
.....|+.|-+.|.-+ . .|..-.+||..| |-+...|+.+...++++
T Consensus 26 ~~~~Lt~rE~~Vl~l~-~-~G~s~~eIA~~L-~iS~~TV~~~~~~i~~K 71 (90)
T 3ulq_B 26 EQDVLTPRECLILQEV-E-KGFTNQEIADAL-HLSKRSIEYSLTSIFNK 71 (90)
T ss_dssp ---CCCHHHHHHHHHH-H-TTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHH-H-cCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3445788887766544 4 788889999999 99999999988776665
No 124
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=35.16 E-value=57 Score=23.37 Aligned_cols=35 Identities=17% Similarity=0.138 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHhCCChhhhhccCCCCCHHHHHHH
Q 024441 72 EAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNH 107 (267)
Q Consensus 72 ~eED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~knR 107 (267)
.-|...|.+++..+|++-.+.|+.| |=+...++.|
T Consensus 50 ~~E~~~i~~aL~~~~gn~~~aA~~L-GIsr~tL~rk 84 (91)
T 1ntc_A 50 ELERTLLTTALRHTQGHKQEAARLL-GWGAATLTAK 84 (91)
T ss_dssp HHHHHHHHHHHHHTTTCTTHHHHHT-TCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHHH
Confidence 3477888899999999999999998 7777666544
No 125
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=34.66 E-value=42 Score=23.63 Aligned_cols=43 Identities=12% Similarity=0.160 Sum_probs=30.2
Q ss_pred CHHHHHHHHHHHHH----hCCChhhhhccCCCCCHHHHHHHHHHHHHHH
Q 024441 71 TEAEEQLVIDLHAR----LGNRWSKIAARLPGRTDNEIKNHWNTHIKKK 115 (267)
Q Consensus 71 T~eED~~Ll~lv~~----~G~~W~~IA~~lpgRT~~q~knRw~~~l~~~ 115 (267)
++.| ..++.+.-- .|-.+..||..+ |-|...|+.+....+++-
T Consensus 20 ~~~e-r~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~~ra~~kL 66 (87)
T 1tty_A 20 SPRE-AMVLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIEVKALRKL 66 (87)
T ss_dssp CHHH-HHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred CHHH-HHHHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 4444 344444443 467899999999 999999999877666553
No 126
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=34.47 E-value=52 Score=22.91 Aligned_cols=43 Identities=30% Similarity=0.271 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHHHHHhCCChhhhhccCCCCCHHHHHHHHHHHHHH
Q 024441 69 LLTEAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKK 114 (267)
Q Consensus 69 ~WT~eED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~knRw~~~l~~ 114 (267)
..|+.|-+.|.- + ..|..-.+||..+ |-+...|+.+....+++
T Consensus 21 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 21 QLTPRERDILKL-I-AQGLPNKMIARRL-DITESTVKVHVKHMLKK 63 (82)
T ss_dssp GSCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 467777655544 4 5678899999999 89999999887766554
No 127
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=33.90 E-value=49 Score=25.98 Aligned_cols=30 Identities=13% Similarity=0.082 Sum_probs=24.5
Q ss_pred hCCChhhhhccCCCCCHHHHHHHHHHHHHHH
Q 024441 85 LGNRWSKIAARLPGRTDNEIKNHWNTHIKKK 115 (267)
Q Consensus 85 ~G~~W~~IA~~lpgRT~~q~knRw~~~l~~~ 115 (267)
.|-...+||..+ |-+...|+++....+++-
T Consensus 155 ~g~s~~EIA~~l-gis~~tV~~~l~ra~~~L 184 (194)
T 1or7_A 155 DGLSYEEIAAIM-DCPVGTVRSRIFRAREAI 184 (194)
T ss_dssp TCCCHHHHHHHT-TSCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 367799999999 999999999887665543
No 128
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=33.52 E-value=59 Score=21.43 Aligned_cols=44 Identities=23% Similarity=0.261 Sum_probs=33.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCChhhhhccCCCCCHHHHHHHHHHHHHH
Q 024441 68 GLLTEAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKK 114 (267)
Q Consensus 68 ~~WT~eED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~knRw~~~l~~ 114 (267)
...|+.|-+.|.- + ..|..-.+||..+ |-+...|+.+....+++
T Consensus 10 ~~L~~~e~~il~~-~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 53 (74)
T 1fse_A 10 PLLTKREREVFEL-L-VQDKTTKEIASEL-FISEKTVRNHISNAMQK 53 (74)
T ss_dssp CCCCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3477777665554 4 5677899999999 88999999888765554
No 129
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=33.28 E-value=33 Score=26.86 Aligned_cols=30 Identities=17% Similarity=0.104 Sum_probs=24.5
Q ss_pred hCCChhhhhccCCCCCHHHHHHHHHHHHHHH
Q 024441 85 LGNRWSKIAARLPGRTDNEIKNHWNTHIKKK 115 (267)
Q Consensus 85 ~G~~W~~IA~~lpgRT~~q~knRw~~~l~~~ 115 (267)
.|-...+||..+ |-+...|+++....+++-
T Consensus 150 ~g~s~~eIA~~l-gis~~tV~~~l~ra~~~L 179 (184)
T 2q1z_A 150 GDLTHRELAAET-GLPLGTIKSRIRLALDRL 179 (184)
T ss_dssp SCCSSCCSTTTC-CCCCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 367789999999 899999999987766553
No 130
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=33.19 E-value=34 Score=28.24 Aligned_cols=17 Identities=18% Similarity=0.341 Sum_probs=14.6
Q ss_pred CCCCCCCCCHHHHHHHH
Q 024441 63 PDLKRGLLTEAEEQLVI 79 (267)
Q Consensus 63 p~~~~~~WT~eED~~Ll 79 (267)
|....|-||+++|+.|.
T Consensus 110 P~N~pGIWT~eDDe~L~ 126 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLK 126 (168)
T ss_dssp CTTCTTCCCHHHHHHHH
T ss_pred CCCCCCCCChhhHHHHH
Confidence 56778899999999887
No 131
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=31.91 E-value=71 Score=20.30 Aligned_cols=38 Identities=21% Similarity=0.277 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhCCChhhhhccCCCCCHHHHHHHHHHHHHH
Q 024441 75 EQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKK 114 (267)
Q Consensus 75 D~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~knRw~~~l~~ 114 (267)
+..++.+ -..|-.-.+||..+ |-+...|+.+....+++
T Consensus 3 e~~vl~l-~~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 40 (61)
T 2jpc_A 3 ERQVLKL-IDEGYTNHGISEKL-HISIKTVETHRMNMMRK 40 (61)
T ss_dssp HHHHHHH-HHTSCCSHHHHHHT-CSCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 3445555 35577789999999 89999999988766655
No 132
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=31.23 E-value=62 Score=24.22 Aligned_cols=35 Identities=26% Similarity=0.415 Sum_probs=27.8
Q ss_pred CHHHHHHHHHHHHHhCCChhhhhccCCCCCHHHHHH
Q 024441 71 TEAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKN 106 (267)
Q Consensus 71 T~eED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~kn 106 (267)
+..-+..|..+....|..|..+|+.| |=+..+|..
T Consensus 14 ~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I~~ 48 (111)
T 2yqf_A 14 TEQAEMKMAVISEHLGLSWAELAREL-QFSVEDINR 48 (111)
T ss_dssp SHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 66667778888889999999999999 766665543
No 133
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=30.30 E-value=65 Score=25.83 Aligned_cols=45 Identities=13% Similarity=0.206 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhC-CChhhhhccCCCCCHHHHHHHHHHHHHHHHhh
Q 024441 73 AEEQLVIDLHARLG-NRWSKIAARLPGRTDNEIKNHWNTHIKKKLLK 118 (267)
Q Consensus 73 eED~~Ll~lv~~~G-~~W~~IA~~lpgRT~~q~knRw~~~l~~~~~k 118 (267)
+-|..|+.+..+.| -.+..||+.+ |-+...|+.|.+.+....+.+
T Consensus 27 ~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~rl~~L~~~G~I~ 72 (171)
T 2e1c_A 27 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGVIK 72 (171)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCeE
Confidence 44567777777766 5799999999 899999999998777666543
No 134
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=29.76 E-value=70 Score=23.92 Aligned_cols=43 Identities=14% Similarity=0.111 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHHHHHhCCChhhhhccCCCCCHHHHHHHHHHHHHH
Q 024441 70 LTEAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKK 114 (267)
Q Consensus 70 WT~eED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~knRw~~~l~~ 114 (267)
.++.+ ..++.++-..|-....||..+ |-+...|+.+....+++
T Consensus 26 L~~~~-r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~ra~~k 68 (113)
T 1xsv_A 26 LTNKQ-RNYLELFYLEDYSLSEIADTF-NVSRQAVYDNIRRTGDL 68 (113)
T ss_dssp SCHHH-HHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHHHHHH
T ss_pred CCHHH-HHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 34433 445556556788899999999 89999999887655444
No 135
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=29.51 E-value=9.8 Score=30.37 Aligned_cols=39 Identities=15% Similarity=0.281 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhCCCCCchhchhhcCccCCcccccccccc
Q 024441 20 EEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNY 60 (267)
Q Consensus 20 eED~~L~~~v~~~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~ 60 (267)
+-|.+|+.++++.+...+.+||+.+| -+...|+.|..+.
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~lg--~s~~tv~~rl~~L 41 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKVG--LSTTPCWRRIQKM 41 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHHT--CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHC--cCHHHHHHHHHHH
Confidence 45888999999999889999999998 5556676655543
No 136
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=28.79 E-value=81 Score=24.17 Aligned_cols=44 Identities=11% Similarity=0.188 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhC-CChhhhhccCCCCCHHHHHHHHHHHHHHHHhh
Q 024441 74 EEQLVIDLHARLG-NRWSKIAARLPGRTDNEIKNHWNTHIKKKLLK 118 (267)
Q Consensus 74 ED~~Ll~lv~~~G-~~W~~IA~~lpgRT~~q~knRw~~~l~~~~~k 118 (267)
-|..|+.+.+..| -.+..||+.+ |-+...|+.|.+.+.+..+.+
T Consensus 10 ~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i~ 54 (151)
T 2dbb_A 10 VDMQLVKILSENSRLTYRELADIL-NTTRQRIARRIDKLKKLGIIR 54 (151)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCEE
Confidence 4556777777766 5799999999 889999999998887776543
No 137
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=28.32 E-value=54 Score=25.01 Aligned_cols=39 Identities=21% Similarity=0.426 Sum_probs=25.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCChhhhhccCCCCCHHHHH
Q 024441 63 PDLKRGLLTEAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIK 105 (267)
Q Consensus 63 p~~~~~~WT~eED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~k 105 (267)
+.+....=|.+ .|..++...|..|..+|+.| |=+..+|.
T Consensus 15 ~~~~~~~~t~~---~l~~Ia~~lG~~Wk~LAR~L-Glse~dId 53 (114)
T 2of5_A 15 SHILNSSPSDR---QINQLAQRLGPEWEPMVLSL-GLSQTDIY 53 (114)
T ss_dssp -CCTTSCCCHH---HHHHHHHTCCSTHHHHHHTT-TCCHHHHH
T ss_pred chhhcCCCCHH---HHHHHHHHHhhhHHHHHHHc-CCCHHHHH
Confidence 33444444555 45566788999999999998 66655553
No 138
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=27.71 E-value=57 Score=24.90 Aligned_cols=35 Identities=23% Similarity=0.460 Sum_probs=24.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCChhhhhccCCCCCHHHH
Q 024441 66 KRGLLTEAEEQLVIDLHARLGNRWSKIAARLPGRTDNEI 104 (267)
Q Consensus 66 ~~~~WT~eED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~ 104 (267)
....=|.+ .|..++...|..|..+|+.| |=+..+|
T Consensus 18 ~~~~~t~~---~l~~Ia~~LG~~Wk~LAR~L-Glse~dI 52 (115)
T 2o71_A 18 LNSSPSDR---QINQLAQRLGPEWEPMVLSL-GLSQTDI 52 (115)
T ss_dssp GGSCCCHH---HHHHHHHHCCTTHHHHHHHT-TCCHHHH
T ss_pred ccCCCCHH---HHHHHHHHHhhhHHHHHHHc-CCCHHHH
Confidence 33344554 45566788999999999998 6665555
No 139
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=27.46 E-value=53 Score=24.99 Aligned_cols=30 Identities=27% Similarity=0.567 Sum_probs=23.4
Q ss_pred HHHHHHHHHhCCChhhhhccCCCCCHHHHHH
Q 024441 76 QLVIDLHARLGNRWSKIAARLPGRTDNEIKN 106 (267)
Q Consensus 76 ~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~kn 106 (267)
..|..+....|..|..+|+.| |=+..+|..
T Consensus 14 ~~l~~ia~~lg~dWk~LAr~L-g~s~~~I~~ 43 (118)
T 2of5_H 14 SNLLSVAGRLGLDWPAVALHL-GVSYREVQR 43 (118)
T ss_dssp HHHHHHHHTCCTTHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHc-CCCHHHHHH
Confidence 457777788999999999999 666665533
No 140
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=27.19 E-value=63 Score=22.75 Aligned_cols=43 Identities=28% Similarity=0.318 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHHHHHHhCCChhhhhccCCCCCHHHHHHHHHHHHHH
Q 024441 69 LLTEAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKK 114 (267)
Q Consensus 69 ~WT~eED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~knRw~~~l~~ 114 (267)
..|+.|-+.|. ++ ..|..-.+||..+ |-+...|+.+....+++
T Consensus 29 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 71 (91)
T 2rnj_A 29 MLTEREMEILL-LI-AKGYSNQEIASAS-HITIKTVKTHVSNILSK 71 (91)
T ss_dssp GCCSHHHHHHH-HH-HTTCCTTHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 35666655554 44 5677889999999 99999999988766554
No 141
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=26.62 E-value=60 Score=24.42 Aligned_cols=29 Identities=28% Similarity=0.296 Sum_probs=23.5
Q ss_pred hCCChhhhhccCCCCCHHHHHHHHHHHHHH
Q 024441 85 LGNRWSKIAARLPGRTDNEIKNHWNTHIKK 114 (267)
Q Consensus 85 ~G~~W~~IA~~lpgRT~~q~knRw~~~l~~ 114 (267)
.|-....||..+ |-+...|+++....+++
T Consensus 123 ~g~s~~EIA~~l-gis~~tV~~~~~ra~~~ 151 (164)
T 3mzy_A 123 RGYSYREIATIL-SKNLKSIDNTIQRIRKK 151 (164)
T ss_dssp TTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 466799999999 89999999988765544
No 142
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=26.20 E-value=97 Score=23.79 Aligned_cols=44 Identities=14% Similarity=0.211 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhC-CChhhhhccCCCCCHHHHHHHHHHHHHHHHhh
Q 024441 74 EEQLVIDLHARLG-NRWSKIAARLPGRTDNEIKNHWNTHIKKKLLK 118 (267)
Q Consensus 74 ED~~Ll~lv~~~G-~~W~~IA~~lpgRT~~q~knRw~~~l~~~~~k 118 (267)
-|..|+.+....| -.+..||+.+ |-+...|+.|...+....+.+
T Consensus 8 ~~~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i~ 52 (151)
T 2cyy_A 8 IDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGVIK 52 (151)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHH-CSCHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCeE
Confidence 3556777777766 5799999999 899999999998887776543
No 143
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=25.85 E-value=76 Score=25.58 Aligned_cols=30 Identities=7% Similarity=-0.017 Sum_probs=24.1
Q ss_pred HhCCChhhhhccCCCCCHHHHHHHHHHHHHH
Q 024441 84 RLGNRWSKIAARLPGRTDNEIKNHWNTHIKK 114 (267)
Q Consensus 84 ~~G~~W~~IA~~lpgRT~~q~knRw~~~l~~ 114 (267)
..|-...+||..+ |-+...|+.+....+++
T Consensus 201 ~~g~s~~EIA~~l-gis~~~V~~~~~ra~~~ 230 (239)
T 1rp3_A 201 YEELPAKEVAKIL-ETSVSRVSQLKAKALER 230 (239)
T ss_dssp TSCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 3467899999999 99999999888665544
No 144
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=24.65 E-value=1.7e+02 Score=22.08 Aligned_cols=100 Identities=12% Similarity=0.118 Sum_probs=0.0
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCCchhchhhcCccCCcccccccccc-----cCCCCCCCC----CCHHHHHHHHHHH
Q 024441 12 VKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNY-----LRPDLKRGL----LTEAEEQLVIDLH 82 (267)
Q Consensus 12 ikkg~WT~eED~~L~~~v~~~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~-----L~p~~~~~~----WT~eED~~Ll~lv 82 (267)
+...+.|.++-..++.++ ..| ..-.+||+.++ .+...++.-...+ +.+....+. .+.+....|++++
T Consensus 28 ~~~~~~s~e~r~~iv~~~-~~G-~s~~~iA~~lg--is~~TV~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~ 103 (149)
T 1k78_A 28 VNGRPLPDVVRQRIVELA-HQG-VRPCDISRQLR--VSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYK 103 (149)
T ss_dssp CTTSCCCHHHHHHHHHHH-HTT-CCHHHHHHHHT--CCHHHHHHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHH-HcC-CCHHHHHHHHC--cCHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHHH
Q ss_pred HHhC-CChhhhhccC---------CCCCHHHHHHHHHHHHHHH
Q 024441 83 ARLG-NRWSKIAARL---------PGRTDNEIKNHWNTHIKKK 115 (267)
Q Consensus 83 ~~~G-~~W~~IA~~l---------pgRT~~q~knRw~~~l~~~ 115 (267)
.+.+ -.-..|+..+ ..-+...|+......+..+
T Consensus 104 ~~~~~~s~~~i~~~l~~~~~~~~g~~~S~sTV~r~L~~~~~~~ 146 (149)
T 1k78_A 104 RQNPTMFAWEIRDRLLAERVCDNDTVPSVSSINRIIRTKVQQP 146 (149)
T ss_dssp HHCTTCCHHHHHHHHHHTTSSCTTTSCCHHHHHHHHHCC----
T ss_pred HhCcchhHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHhcCC
No 145
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=24.03 E-value=88 Score=23.33 Aligned_cols=30 Identities=27% Similarity=0.537 Sum_probs=22.0
Q ss_pred HHHHHHHHHhCCChhhhhccCCCCCHHHHHH
Q 024441 76 QLVIDLHARLGNRWSKIAARLPGRTDNEIKN 106 (267)
Q Consensus 76 ~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~kn 106 (267)
..|-.+....|..|..+|+.| |=+..+|..
T Consensus 19 ~~~~~ia~~lg~~Wk~LAr~L-g~~~~~I~~ 48 (110)
T 1wxp_A 19 EQIEVFANKLGEQWKILAPYL-EMKDSEIRQ 48 (110)
T ss_dssp HHHHHHHHHHTTTHHHHTTTT-TCCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHh-CCCHHHHHH
Confidence 445566677799999999999 666665543
No 146
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=23.82 E-value=2.5e+02 Score=21.49 Aligned_cols=77 Identities=12% Similarity=0.076 Sum_probs=45.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCchhchhhcCccCCcccccccccc------cCCCCC----CCCCCHHHHHHHHHHHHH
Q 024441 15 GPWTAEEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNY------LRPDLK----RGLLTEAEEQLVIDLHAR 84 (267)
Q Consensus 15 g~WT~eED~~L~~~v~~~g~~~W~~IA~~~~~~Rt~~QCr~Rw~~~------L~p~~~----~~~WT~eED~~Ll~lv~~ 84 (267)
.+.|.++-..++.++. .| ..-.+||+.++ .+...+ .||.+. +.+... ....+.+..+.|++++.+
T Consensus 24 ~~~s~e~r~~ii~l~~-~G-~s~~~IA~~lg--is~~TV-~rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~ 98 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAH-QG-VRPCDISRQLR--VSHGCV-SKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQ 98 (159)
T ss_dssp CSSCHHHHHHHHHHHH-HT-CCHHHHHHHHT--CCSHHH-HHHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH-cC-CCHHHHHHHHC--cCHHHH-HHHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 4688888888888774 45 45789999887 433333 233322 222211 234787777888888776
Q ss_pred hC-CChhhhhccC
Q 024441 85 LG-NRWSKIAARL 96 (267)
Q Consensus 85 ~G-~~W~~IA~~l 96 (267)
.. -.-..|+..+
T Consensus 99 ~~~~s~~~i~~~l 111 (159)
T 2k27_A 99 NPTMFAWEIRDRL 111 (159)
T ss_dssp CSSSCHHHHHHHH
T ss_pred CccchHHHHHHHH
Confidence 43 2234455444
No 147
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=22.67 E-value=1.5e+02 Score=21.62 Aligned_cols=45 Identities=20% Similarity=0.197 Sum_probs=34.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCCChhhhhccCCCCCHHHHHHHHHHHHHH
Q 024441 67 RGLLTEAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKK 114 (267)
Q Consensus 67 ~~~WT~eED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~knRw~~~l~~ 114 (267)
....|+.|-+.|.- + ..|-.-.+||..| |-+...|+.+...++++
T Consensus 32 ~~~Lt~re~~Vl~l-~-~~G~s~~EIA~~L-~iS~~TV~~~l~ri~~K 76 (99)
T 1p4w_A 32 DKRLSPKESEVLRL-F-AEGFLVTEIAKKL-NRSIKTISSQKKSAMMK 76 (99)
T ss_dssp SSSCCHHHHHHHHH-H-HHTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 34578888776644 3 3687889999999 88999999988766655
No 148
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=21.85 E-value=74 Score=22.75 Aligned_cols=35 Identities=11% Similarity=0.088 Sum_probs=27.1
Q ss_pred CHHHHHHHHHHHHHhCCChhhhhccCCCCCHHHHHH
Q 024441 71 TEAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKN 106 (267)
Q Consensus 71 T~eED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~kn 106 (267)
..-|.+.|.+++.+++++..+.|+.| |=+...+..
T Consensus 39 ~~~Er~~I~~aL~~~~GN~s~AA~~L-GISR~TLyr 73 (81)
T 1umq_A 39 DRVRWEHIQRIYEMCDRNVSETARRL-NMHRRTLQR 73 (81)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHH-TSCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHh-CCCHHHHHH
Confidence 34567788899999999999999988 666665543
No 149
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=21.85 E-value=1.3e+02 Score=22.51 Aligned_cols=43 Identities=12% Similarity=0.425 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhC-CChhhhhccCCCCCHHHHHHHHHHHHHHHHhh
Q 024441 75 EQLVIDLHARLG-NRWSKIAARLPGRTDNEIKNHWNTHIKKKLLK 118 (267)
Q Consensus 75 D~~Ll~lv~~~G-~~W~~IA~~lpgRT~~q~knRw~~~l~~~~~k 118 (267)
|..|+.+....| -.+..||+.+ |-+...|+.+...+....+..
T Consensus 6 ~~~il~~L~~~~~~~~~ela~~l-g~s~~tv~~~l~~L~~~G~i~ 49 (141)
T 1i1g_A 6 DKIILEILEKDARTPFTEIAKKL-GISETAVRKRVKALEEKGIIE 49 (141)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCEe
Confidence 456667776666 4799999999 899999999998877766543
No 150
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=20.67 E-value=1.1e+02 Score=22.85 Aligned_cols=43 Identities=19% Similarity=0.184 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHHHHHhCCChhhhhccCCCCCHHHHHHHHHHHHHH
Q 024441 70 LTEAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKK 114 (267)
Q Consensus 70 WT~eED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~knRw~~~l~~ 114 (267)
+++.+ ..++.++-..|..-..||..+ |-|...|+.+....+++
T Consensus 23 L~~~~-r~vl~l~y~~g~s~~EIA~~l-giS~~tV~~~l~ra~~k 65 (113)
T 1s7o_A 23 LTDKQ-MNYIELYYADDYSLAEIADEF-GVSRQAVYDNIKRTEKI 65 (113)
T ss_dssp SCHHH-HHHHHHHHHTCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred CCHHH-HHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 45544 445556556788899999999 99999999887765543
Done!