Query 024443
Match_columns 267
No_of_seqs 184 out of 412
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 08:19:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024443.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024443hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rls_A YAF9, protein AF-9 homo 100.0 3.2E-54 1.1E-58 373.7 17.1 151 44-194 1-168 (175)
2 3qrl_A Transcription initiatio 100.0 3.4E-37 1.2E-41 258.9 14.5 127 47-189 8-139 (140)
3 2gjd_A Ubiquitin-conjugating e 38.1 77 0.0026 25.6 6.5 34 69-102 36-69 (157)
4 3rcz_B SUMO-conjugating enzyme 37.7 78 0.0027 26.0 6.5 33 70-102 43-75 (163)
5 2grr_A Ubiquitin-conjugating e 33.2 1E+02 0.0036 24.9 6.5 35 68-102 38-72 (161)
6 3h8k_A Ubiquitin-conjugating e 28.2 1.1E+02 0.0038 24.7 5.9 34 69-102 31-64 (164)
7 2onu_A Ubiquitin-conjugating e 27.7 1.3E+02 0.0043 24.3 6.1 34 69-102 26-59 (152)
8 1i7k_A Ubiquitin-conjugating e 27.2 76 0.0026 26.6 4.8 43 69-111 57-101 (179)
9 1zdn_A Ubiquitin-conjugating e 26.2 1.3E+02 0.0044 24.3 5.9 34 69-102 40-73 (158)
10 2aak_A UBC1, ubiquitin conjuga 25.5 1.5E+02 0.005 23.7 6.1 34 69-102 31-64 (152)
11 3rz3_A Ubiquitin-conjugating e 23.6 1.5E+02 0.0051 24.6 5.9 36 68-103 34-69 (183)
12 2fo3_A Ubiquitin-conjugating e 23.4 1.7E+02 0.0057 22.6 5.9 34 69-102 33-66 (125)
13 2h2y_A Ubiquitin-conjugating e 23.0 1.7E+02 0.0057 23.1 5.9 34 69-102 47-80 (136)
14 3bl4_A Uncharacterized protein 22.6 86 0.0029 24.9 4.0 30 231-260 32-61 (124)
15 1jat_A Ubiquitin-conjugating e 21.8 1.9E+02 0.0064 23.2 6.0 34 69-102 32-65 (155)
16 1ayz_A UBC2, ubiquitin-conjuga 21.1 1.9E+02 0.0066 23.7 6.1 34 69-102 31-64 (169)
17 4gpr_A Ubiquitin-conjugating e 20.9 1.8E+02 0.0061 23.2 5.7 34 69-102 31-64 (151)
18 2a7l_A Hypothetical ubiquitin- 20.6 2.6E+02 0.0089 22.1 6.6 35 68-102 50-84 (136)
19 1fxt_A Ubiquitin-conjugating e 20.3 2.3E+02 0.0078 22.5 6.2 33 70-102 30-62 (149)
20 2e2c_A Ubiquitin conjugating e 20.1 2E+02 0.0067 23.1 5.8 34 69-102 36-69 (156)
No 1
>3rls_A YAF9, protein AF-9 homolog; yeats domain, histone, transcription; 1.70A {Saccharomyces cerevisiae} PDB: 3fk3_A
Probab=100.00 E-value=3.2e-54 Score=373.67 Aligned_cols=151 Identities=43% Similarity=0.833 Sum_probs=135.2
Q ss_pred eeeeEEEEeEEEccceEEcCC----CCCCCCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCCCCcceecCCCcEEEeee
Q 024443 44 LKDVEISIPIVYGNVAFWLGK----KASEYQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFNNPTRAVESPPFELSESG 119 (267)
Q Consensus 44 ~k~v~I~~pIv~Gn~A~~l~k----k~~e~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~nP~Rvv~~PPFeVtE~G 119 (267)
|||++|++||||||+|++|++ ++++++||+|+|||||++++|+++||+||+|+|||||+||+|+|++|||+|+|+|
T Consensus 1 vk~v~i~kpIv~Gn~a~~l~~~~~~~~~~~~TH~WtVyVr~~~~edis~~v~KV~F~LHpSF~np~Rvv~~PPFevtE~G 80 (175)
T 3rls_A 1 IKTLSVSRPIIYGNTAKKMGSVKPPNAPAEHTHLWTIFVRGPQNEDISYFIKKVVFKLHDTYPNPVRSIEAPPFELTETG 80 (175)
T ss_dssp CCCCCEEEEEEEEEEEEECCSCCCTTCCTTCCEEEEEEEECGGGCCCTTTEEEEEEECCTTSSSCEEEECSSSEEEEEEE
T ss_pred CCceEEEeCEEEcceeEECCccccCCCCCCCcEEEEEEEECCCCCChhheEEEEEEEcCCCCCCCcEEEeCCCCEEEEeE
Confidence 689999999999999999986 3667899999999999999999999999999999999999999999999999999
Q ss_pred EEeEEEEEEEEEeecCCCCCEEEEEEeecCCCCCCC-------C------CCCCCCeEEEeeeEEEecCCCHHHHHHHHc
Q 024443 120 WGEFEIAITLYFHADVCDKPLNLYHHLKLYPEDESG-------S------MSTKKPVVVESYDEIVFPEPSDSFLARVQN 186 (267)
Q Consensus 120 WGEF~I~I~I~F~~d~~ekpi~i~H~L~L~~~~~~~-------~------~~~~~pVv~E~ydeIvF~nPse~f~~~L~~ 186 (267)
||||+|.|+|||++++++|+++|.|+|+|++++.+. . ..+++||++|+||||||+||+|.||++|++
T Consensus 81 WGeF~i~I~i~F~~~~~ek~i~i~H~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~se~ydEivF~ePte~f~~~L~~ 160 (175)
T 3rls_A 81 WGEFDINIKVYFVEEANEKVLNFYHRLRLHPYANPVPNSDNGNEQNTTDHNSKDAEVSSVYFDEIVFNEPNEEFFKILMS 160 (175)
T ss_dssp SSCCEEEEEEEECGGGCCCCEEEEEECCCCC-----------------------CCEEEEEEEEEEESSCCHHHHHHHHH
T ss_pred EeeEEEEEEEEEeCCCCCccEEEEEEEEecCCCCccccccccccccccccccCCCceEEEEeccEEEeCCCHHHHHHHHh
Confidence 999999999999988899999999999999986431 1 124789999999999999999999999999
Q ss_pred CCCccCCC
Q 024443 187 HPAVTLPR 194 (267)
Q Consensus 187 ~p~~~~~~ 194 (267)
+|+.++|.
T Consensus 161 ~p~~~lp~ 168 (175)
T 3rls_A 161 RPGNLLPS 168 (175)
T ss_dssp STTCCSCS
T ss_pred CCCccCCC
Confidence 99987664
No 2
>3qrl_A Transcription initiation factor TFIID subunit 14; yeats domain, IG fold, nucleus, nuclear protein; HET: PGE; 1.70A {Saccharomyces cerevisiae} PDB: 2l7e_A
Probab=100.00 E-value=3.4e-37 Score=258.92 Aligned_cols=127 Identities=20% Similarity=0.486 Sum_probs=109.0
Q ss_pred eEEEEeEEEccceEEcCCCC--CCCCeeeEE--EEEeCCCCCCcc-cceeeeEEEeCCCCCCCcceecCCCcEEEeeeEE
Q 024443 47 VEISIPIVYGNVAFWLGKKA--SEYQSHKWT--VYVRGATNEDLG-VVIKRAVFQLHSSFNNPTRAVESPPFELSESGWG 121 (267)
Q Consensus 47 v~I~~pIv~Gn~A~~l~kk~--~e~~tH~Wt--VyVr~~~~edls-~~IkKV~F~LHpSF~nP~Rvv~~PPFeVtE~GWG 121 (267)
|...+.|+.+.. .+++.. .+.++|+|+ |||||.++++++ +||+||+|+|||||+||+|+|++|||+|+|+|||
T Consensus 8 vkrtvr~~T~Q~--~~~~~~~~eg~~~h~WtieV~vr~~~g~ei~~~~i~kV~f~LH~sF~np~r~v~~pPF~v~e~GWG 85 (140)
T 3qrl_A 8 VKRTIRIKTQQH--ILPEVPPVENFPVRQWSIEIVLLDDEGKEIPATIFDKVIYHLHPTFANPNRTFTDPPFRIEEQGWG 85 (140)
T ss_dssp EEEEEEEEEEEE--ECTTSCCBTTBCCEEEEEEEEEECTTSCEECCTTEEEEEEECCTTSSSCEEEECSTTCCEEEEESS
T ss_pred eEEEEEEEEeee--eCCCCCCCCCCcccEeeEEEEEeCCCCCcCchheEEEEEEEeCCCCCCCeEEEcCCCcEEEEEEee
Confidence 444555555555 565543 345779999 899999999885 8999999999999999999999999999999999
Q ss_pred eEEEEEEEEEeecCCCCCEEEEEEeecCCCCCCCCCCCCCCeEEEeeeEEEecCCCHHHHHHHHcCCC
Q 024443 122 EFEIAITLYFHADVCDKPLNLYHHLKLYPEDESGSMSTKKPVVVESYDEIVFPEPSDSFLARVQNHPA 189 (267)
Q Consensus 122 EF~I~I~I~F~~d~~ekpi~i~H~L~L~~~~~~~~~~~~~pVv~E~ydeIvF~nPse~f~~~L~~~p~ 189 (267)
||+|.|+|||++++ ++++|.|+|+|+++. ++.+++|+|+||+++|+++|+++++
T Consensus 86 eF~i~I~i~f~~~~--~~~~i~H~L~f~~~~------------y~~~h~i~f~np~~~l~~~L~~~Gp 139 (140)
T 3qrl_A 86 GFPLDISVFLLEKA--GERKIPHDLNFLQES------------YEVEHVIQIPLNKPLLTEELAKSGS 139 (140)
T ss_dssp CCCEEEEEEEGGGT--EEEEEEECCCSSSSE------------EEEEEEEEEESCSHHHHHHHTTTSC
T ss_pred eEEEEEEEEEecCC--CcEEEEEEEEeCCCC------------CcceEEEEECCCCHHHHHHHHHhCC
Confidence 99999999998754 468999999999764 6778999999999999999999775
No 3
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=38.13 E-value=77 Score=25.65 Aligned_cols=34 Identities=9% Similarity=0.222 Sum_probs=25.0
Q ss_pred CCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCC
Q 024443 69 YQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFN 102 (267)
Q Consensus 69 ~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~ 102 (267)
.....|.+.+.|+.+.....=+=++.+.+.+.|+
T Consensus 36 ~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP 69 (157)
T 2gjd_A 36 MDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYP 69 (157)
T ss_dssp EEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTT
T ss_pred CcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCC
Confidence 4789999999998765544445557777778876
No 4
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=37.75 E-value=78 Score=25.98 Aligned_cols=33 Identities=9% Similarity=0.231 Sum_probs=26.1
Q ss_pred CeeeEEEEEeCCCCCCcccceeeeEEEeCCCCC
Q 024443 70 QSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFN 102 (267)
Q Consensus 70 ~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~ 102 (267)
....|.+-+.|+.+.....=+=++.+.+-+.|+
T Consensus 43 nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP 75 (163)
T 3rcz_B 43 DLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYP 75 (163)
T ss_dssp EEEEEEEEEECCTTSTTTTCEEEEEEECCTTTT
T ss_pred CccEEEEEEECCCCCCcCCCEEEEEEECCCCCC
Confidence 789999999998776655556667778888886
No 5
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=33.24 E-value=1e+02 Score=24.93 Aligned_cols=35 Identities=6% Similarity=0.159 Sum_probs=25.1
Q ss_pred CCCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCC
Q 024443 68 EYQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFN 102 (267)
Q Consensus 68 e~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~ 102 (267)
+.....|.+.+.|+.+.....=+=++...+.+.|+
T Consensus 38 ~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP 72 (161)
T 2grr_A 38 TMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYP 72 (161)
T ss_dssp CEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTT
T ss_pred CCCccEEEEEEECCCCCCccCCEEEEEEEcCcccC
Confidence 35789999999998765543334466777778876
No 6
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=28.20 E-value=1.1e+02 Score=24.68 Aligned_cols=34 Identities=9% Similarity=0.254 Sum_probs=26.4
Q ss_pred CCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCC
Q 024443 69 YQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFN 102 (267)
Q Consensus 69 ~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~ 102 (267)
+....|.+-+.|+.+.....=+=++.+.+.+.|+
T Consensus 31 ~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP 64 (164)
T 3h8k_A 31 ENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYP 64 (164)
T ss_dssp TCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTT
T ss_pred CCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCC
Confidence 3678999999998776655556667888888886
No 7
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=27.70 E-value=1.3e+02 Score=24.31 Aligned_cols=34 Identities=12% Similarity=0.163 Sum_probs=24.7
Q ss_pred CCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCC
Q 024443 69 YQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFN 102 (267)
Q Consensus 69 ~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~ 102 (267)
+....|.+-+.|+.+.....=+=++.+.+.+.|+
T Consensus 26 ~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP 59 (152)
T 2onu_A 26 GSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYP 59 (152)
T ss_dssp TEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTT
T ss_pred CccceEEEEEECCCCCcccceEEEEEEcCcccCC
Confidence 5789999999998765554445566666777776
No 8
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=27.24 E-value=76 Score=26.58 Aligned_cols=43 Identities=19% Similarity=0.295 Sum_probs=28.8
Q ss_pred CCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCC--CCcceecCC
Q 024443 69 YQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFN--NPTRAVESP 111 (267)
Q Consensus 69 ~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~--nP~Rvv~~P 111 (267)
+....|.+.+.|+.+.....=+=++.+.+.+.|+ .|...+.++
T Consensus 57 ~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~ 101 (179)
T 1i7k_A 57 DNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTP 101 (179)
T ss_dssp TEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred CcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecC
Confidence 4789999999998765554445566777778876 344444443
No 9
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=26.22 E-value=1.3e+02 Score=24.33 Aligned_cols=34 Identities=15% Similarity=0.124 Sum_probs=24.2
Q ss_pred CCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCC
Q 024443 69 YQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFN 102 (267)
Q Consensus 69 ~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~ 102 (267)
+....|.+.+.|+.+.....=+=++.+.+.+.|+
T Consensus 40 ~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP 73 (158)
T 1zdn_A 40 EDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFP 73 (158)
T ss_dssp SCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTT
T ss_pred CChhheeEEEECCCCCCccCcEEEEEEEcCCCCC
Confidence 4688999999998765543334456666777776
No 10
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=25.50 E-value=1.5e+02 Score=23.70 Aligned_cols=34 Identities=9% Similarity=0.167 Sum_probs=24.9
Q ss_pred CCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCC
Q 024443 69 YQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFN 102 (267)
Q Consensus 69 ~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~ 102 (267)
+....|.+.+.|+.+.....=+=++.+.+.+.|+
T Consensus 31 ~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP 64 (152)
T 2aak_A 31 NNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYP 64 (152)
T ss_dssp TEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTT
T ss_pred CCccEEEEEEeCCCCCCccCCEEEEEEECCCCCC
Confidence 4688999999998765544445566777778876
No 11
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=23.64 E-value=1.5e+02 Score=24.62 Aligned_cols=36 Identities=17% Similarity=0.166 Sum_probs=26.8
Q ss_pred CCCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCCC
Q 024443 68 EYQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFNN 103 (267)
Q Consensus 68 e~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~n 103 (267)
++....|.+.+.|+.+.....=+=++.+.+-+.|+.
T Consensus 34 ~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~ 69 (183)
T 3rz3_A 34 EGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPY 69 (183)
T ss_dssp TCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTS
T ss_pred ccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCC
Confidence 457889999999987765544455677778888863
No 12
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=23.43 E-value=1.7e+02 Score=22.65 Aligned_cols=34 Identities=12% Similarity=0.153 Sum_probs=23.9
Q ss_pred CCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCC
Q 024443 69 YQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFN 102 (267)
Q Consensus 69 ~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~ 102 (267)
+....|.+-+.|+.+.....=+=++.+.+-+.|+
T Consensus 33 ~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP 66 (125)
T 2fo3_A 33 NNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYP 66 (125)
T ss_dssp TCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTT
T ss_pred chhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCC
Confidence 4688999999998765544334456666677775
No 13
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=23.02 E-value=1.7e+02 Score=23.10 Aligned_cols=34 Identities=12% Similarity=0.160 Sum_probs=24.2
Q ss_pred CCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCC
Q 024443 69 YQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFN 102 (267)
Q Consensus 69 ~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~ 102 (267)
+....|.+.+.|+.+.....=+=++.+.+.+.|+
T Consensus 47 ~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP 80 (136)
T 2h2y_A 47 SNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYP 80 (136)
T ss_dssp TCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTT
T ss_pred ccccccEEEEECCCCCceeCCEEEEEEEeCCCCC
Confidence 4688999999998765544444556666777776
No 14
>3bl4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 2.20A {Arthrobacter SP}
Probab=22.64 E-value=86 Score=24.90 Aligned_cols=30 Identities=17% Similarity=0.031 Sum_probs=25.0
Q ss_pred ChHHHHHHHHHHHHHHHhcCCeeEEEeccc
Q 024443 231 SEADELLQLAAARQQEHSNSPFFFLVDQFE 260 (267)
Q Consensus 231 ~E~~El~~L~~ar~~V~~~~~~~~~~~~~~ 260 (267)
-+.++..++.+++.+++...+|++|+|.-.
T Consensus 32 i~~e~A~~~~~~~~~l~~~~~~~vL~D~r~ 61 (124)
T 3bl4_A 32 ITAADAERAMLRVNQLCGDDRHPMLVDMAT 61 (124)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred cCHHHHHHHHHHHHHHhCCCceEEEEEccc
Confidence 355667889999999999999999999743
No 15
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=21.78 E-value=1.9e+02 Score=23.19 Aligned_cols=34 Identities=12% Similarity=0.093 Sum_probs=24.6
Q ss_pred CCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCC
Q 024443 69 YQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFN 102 (267)
Q Consensus 69 ~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~ 102 (267)
+....|.+.+.|+.+.....=+=++.+.+.+.|+
T Consensus 32 ~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP 65 (155)
T 1jat_A 32 DNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYP 65 (155)
T ss_dssp TEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTT
T ss_pred CchhEEEEEEECCCCCCccCcEEEEEEEcCCCCC
Confidence 4788999999998765544445566666777776
No 16
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=21.11 E-value=1.9e+02 Score=23.70 Aligned_cols=34 Identities=9% Similarity=0.229 Sum_probs=24.0
Q ss_pred CCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCC
Q 024443 69 YQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFN 102 (267)
Q Consensus 69 ~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~ 102 (267)
+....|.+.+.|+.+.....=+=++.+.+-+.|+
T Consensus 31 ~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP 64 (169)
T 1ayz_A 31 DNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYP 64 (169)
T ss_dssp TEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTT
T ss_pred CccccceEEEECCCCCCcCCCEEEEEEECcccCC
Confidence 4688999999998765544334456666777776
No 17
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=20.87 E-value=1.8e+02 Score=23.19 Aligned_cols=34 Identities=9% Similarity=0.136 Sum_probs=25.8
Q ss_pred CCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCC
Q 024443 69 YQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFN 102 (267)
Q Consensus 69 ~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~ 102 (267)
+....|.+-+.|+.+.....=+=++.+.+-+.|+
T Consensus 31 ~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP 64 (151)
T 4gpr_A 31 DDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYP 64 (151)
T ss_dssp SCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTT
T ss_pred CCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCC
Confidence 4688999999998776655555567777778876
No 18
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=20.56 E-value=2.6e+02 Score=22.12 Aligned_cols=35 Identities=17% Similarity=0.275 Sum_probs=24.8
Q ss_pred CCCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCC
Q 024443 68 EYQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFN 102 (267)
Q Consensus 68 e~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~ 102 (267)
++....|.+.+.|+.+.....=+=++.+.+-+.|+
T Consensus 50 ~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP 84 (136)
T 2a7l_A 50 QNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYP 84 (136)
T ss_dssp CCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTT
T ss_pred ccccceeEEEEECCCCCccccEEEEEEEECCCCCC
Confidence 45789999999998765544334456666677776
No 19
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Probab=20.27 E-value=2.3e+02 Score=22.46 Aligned_cols=33 Identities=6% Similarity=-0.066 Sum_probs=23.7
Q ss_pred CeeeEEEEEeCCCCCCcccceeeeEEEeCCCCC
Q 024443 70 QSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFN 102 (267)
Q Consensus 70 ~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~ 102 (267)
....|.+.+.|+.+.....=+=++.+.+.+.|+
T Consensus 30 ~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP 62 (149)
T 1fxt_A 30 DIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYP 62 (149)
T ss_dssp CSSEEEEEEECCSSSTTCSSEEEEEEECCTTTT
T ss_pred CceEEEEEEECCCCCCcCCcEEEEEEECCCCCC
Confidence 688999999998765544334456667777776
No 20
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=20.13 E-value=2e+02 Score=23.09 Aligned_cols=34 Identities=12% Similarity=0.274 Sum_probs=24.5
Q ss_pred CCeeeEEEEEeCCCCCCcccceeeeEEEeCCCCC
Q 024443 69 YQSHKWTVYVRGATNEDLGVVIKRAVFQLHSSFN 102 (267)
Q Consensus 69 ~~tH~WtVyVr~~~~edls~~IkKV~F~LHpSF~ 102 (267)
+....|.+.+.|+.+.....=+=++.+.+.+.|+
T Consensus 36 ~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP 69 (156)
T 2e2c_A 36 DNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYP 69 (156)
T ss_dssp SCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTT
T ss_pred CCccEEEEEEECCCCCCcCCcEEEEEEECCCCCC
Confidence 4678999999998765544334466777778876
Done!