BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024444
(267 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|C Chain C, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|D Chain D, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
Length = 303
Score = 429 bits (1104), Expect = e-121, Method: Compositional matrix adjust.
Identities = 206/244 (84%), Positives = 224/244 (91%), Gaps = 2/244 (0%)
Query: 1 MSKEVNEEGQTHRHHHGKDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVAT 60
MSKEV+EE Q H+H GKDYVDPPPAP D+ ELKLWSF+RA IAEF+ATLLFLY++VAT
Sbjct: 1 MSKEVSEEAQAHQH--GKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVAT 58
Query: 61 VIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIR 120
VIGH K++ CG VGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSL+R
Sbjct: 59 VIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLR 118
Query: 121 AVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYT 180
A+ YM+AQCLGAICGVGLVKAFMK YN GGGAN+VA GYNKG+ALGAEIIGTFVLVYT
Sbjct: 119 ALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYT 178
Query: 181 VFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKA 240
VFSATDPKRSARDSHVP+LAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVI+N++K
Sbjct: 179 VFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKV 238
Query: 241 WDDH 244
WDD
Sbjct: 239 WDDQ 242
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
pdb|1Z98|M Chain M, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
Length = 281
Score = 429 bits (1102), Expect = e-120, Method: Compositional matrix adjust.
Identities = 206/244 (84%), Positives = 224/244 (91%), Gaps = 2/244 (0%)
Query: 1 MSKEVNEEGQTHRHHHGKDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVAT 60
MSKEV+EE Q H+H GKDYVDPPPAP D+ ELKLWSF+RA IAEF+ATLLFLY++VAT
Sbjct: 1 MSKEVSEEAQAHQH--GKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVAT 58
Query: 61 VIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIR 120
VIGH K++ CG VGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSL+R
Sbjct: 59 VIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLR 118
Query: 121 AVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYT 180
A+ YM+AQCLGAICGVGLVKAFMK YN GGGAN+VA GYNKG+ALGAEIIGTFVLVYT
Sbjct: 119 ALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYT 178
Query: 181 VFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKA 240
VFSATDPKRSARDSHVP+LAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVI+N++K
Sbjct: 179 VFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKV 238
Query: 241 WDDH 244
WDD
Sbjct: 239 WDDQ 242
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
pdb|3CN6|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
Length = 304
Score = 428 bits (1101), Expect = e-120, Method: Compositional matrix adjust.
Identities = 206/244 (84%), Positives = 224/244 (91%), Gaps = 2/244 (0%)
Query: 1 MSKEVNEEGQTHRHHHGKDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVAT 60
MSKEV+EE Q H+H GKDYVDPPPAP D+ ELKLWSF+RA IAEF+ATLLFLY++VAT
Sbjct: 24 MSKEVSEEAQAHQH--GKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVAT 81
Query: 61 VIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIR 120
VIGH K++ CG VGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSL+R
Sbjct: 82 VIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLR 141
Query: 121 AVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYT 180
A+ YM+AQCLGAICGVGLVKAFMK YN GGGAN+VA GYNKG+ALGAEIIGTFVLVYT
Sbjct: 142 ALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYT 201
Query: 181 VFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKA 240
VFSATDPKRSARDSHVP+LAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVI+N++K
Sbjct: 202 VFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKV 261
Query: 241 WDDH 244
WDD
Sbjct: 262 WDDQ 265
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e
Mutant
Length = 300
Score = 427 bits (1097), Expect = e-120, Method: Compositional matrix adjust.
Identities = 205/244 (84%), Positives = 223/244 (91%), Gaps = 2/244 (0%)
Query: 1 MSKEVNEEGQTHRHHHGKDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVAT 60
MSKEV+EE Q H+H GKDYVDPPPAP D+ ELKLWSF+RA IAEF+ATLLFLY++VAT
Sbjct: 20 MSKEVSEEAQAHQH--GKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVAT 77
Query: 61 VIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIR 120
VIGH K++ CG VGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV L+R
Sbjct: 78 VIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVELLR 137
Query: 121 AVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYT 180
A+ YM+AQCLGAICGVGLVKAFMK YN GGGAN+VA GYNKG+ALGAEIIGTFVLVYT
Sbjct: 138 ALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYT 197
Query: 181 VFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKA 240
VFSATDPKRSARDSHVP+LAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVI+N++K
Sbjct: 198 VFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKV 257
Query: 241 WDDH 244
WDD
Sbjct: 258 WDDQ 261
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e,
S274e Mutant
Length = 304
Score = 427 bits (1097), Expect = e-120, Method: Compositional matrix adjust.
Identities = 205/244 (84%), Positives = 223/244 (91%), Gaps = 2/244 (0%)
Query: 1 MSKEVNEEGQTHRHHHGKDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVAT 60
MSKEV+EE Q H+H GKDYVDPPPAP D+ ELKLWSF+RA IAEF+ATLLFLY++VAT
Sbjct: 24 MSKEVSEEAQAHQH--GKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVAT 81
Query: 61 VIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIR 120
VIGH K++ CG VGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV L+R
Sbjct: 82 VIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVELLR 141
Query: 121 AVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYT 180
A+ YM+AQCLGAICGVGLVKAFMK YN GGGAN+VA GYNKG+ALGAEIIGTFVLVYT
Sbjct: 142 ALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYT 201
Query: 181 VFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKA 240
VFSATDPKRSARDSHVP+LAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVI+N++K
Sbjct: 202 VFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKV 261
Query: 241 WDDH 244
WDD
Sbjct: 262 WDDQ 265
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel
Length = 271
Score = 146 bits (368), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 92/218 (42%), Positives = 130/218 (59%), Gaps = 14/218 (6%)
Query: 32 AELKLWSFYRALIAEFVATLLFLYVSVATVIGHK---KQSDACGGV-GLLGIAWAFGGMI 87
+E K F+RA++AEF+A +LF+++S+ + +G K + G V + ++ AFG I
Sbjct: 3 SEFKKKLFWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSI 62
Query: 88 FVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKH-E 146
L ISG H+NPAVT GL L+ ++S++RA+ Y++AQC+GAI ++
Sbjct: 63 ATLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLP 122
Query: 147 YNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGF 206
NSL G N +A G N G LG EIIGT LV V + TD +R RD + PL IGF
Sbjct: 123 DNSL--GLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRR--RD--LGGSGPLAIGF 176
Query: 207 AVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDH 244
+V + HL I TG GINPARSFG++VI +N + DH
Sbjct: 177 SVALGHLLAIDYTGCGINPARSFGSSVITHN---FQDH 211
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron
Crystallography
pdb|1IH5|A Chain A, Crystal Structure Of Aquaporin-1
pdb|1H6I|A Chain A, A Refined Structure Of Human Aquaporin 1
Length = 269
Score = 145 bits (366), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 92/212 (43%), Positives = 125/212 (58%), Gaps = 15/212 (7%)
Query: 32 AELKLWSFYRALIAEFVATLLFLYVSVATVIGHK-----KQSDACGGVGLLGIAWAFGGM 86
+E K F+RA++AEF+AT LF+++S+ + +G K Q+ V ++ AFG
Sbjct: 3 SEFKKKLFWRAVVAEFLATTLFVFISIGSALGFKYPVGNNQTAVQDNVK---VSLAFGLS 59
Query: 87 IFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKH- 145
I L ISG H+NPAVT GL L+ ++S+ RA+ Y++AQC+GAI ++
Sbjct: 60 IATLAQSVGHISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGITSSL 119
Query: 146 EYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIG 205
NSL G N +A G N G LG EIIGT LV V + TD +R RD + APL IG
Sbjct: 120 TGNSL--GRNDLADGVNSGQGLGIEIIGTLQLVLCVLATTDRRR--RD--LGGSAPLAIG 173
Query: 206 FAVFMVHLATIPITGTGINPARSFGAAVIYNN 237
+V + HL I TG GINPARSFG+AVI +N
Sbjct: 174 LSVALGHLLAIDYTGCGINPARSFGSAVITHN 205
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution
From Electron Micrograph
Length = 340
Score = 133 bits (335), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 89/224 (39%), Positives = 129/224 (57%), Gaps = 13/224 (5%)
Query: 24 PPAPLIDMAELKLWS--FYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAW 81
P + I +A +W+ F++A+ AEF+A L+F+ +SV + I + V ++ I+
Sbjct: 34 PSSRSIMVAFKGVWTQAFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLP-VDMVLISL 92
Query: 82 AFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKA 141
FG I +V C ISGGHINPAVT + RK+S+ ++V Y+ AQCLGAI G G++
Sbjct: 93 CFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGIL-- 150
Query: 142 FMKHEYNSLGG-GANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLA 200
++ + +GG G TV G L E+I TF LV+T+F++ D KR+ V
Sbjct: 151 YLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVTGSV---- 206
Query: 201 PLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDH 244
L IGF+V + HL I TG +NPARSFG AVI N W++H
Sbjct: 207 ALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGN---WENH 247
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4
(Aqp4m23) At 3.2 A Resolution By Electron
Crystallography
Length = 301
Score = 133 bits (334), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 85/208 (40%), Positives = 122/208 (58%), Gaps = 11/208 (5%)
Query: 38 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGI 97
+F++A+ AEF+A L+F+ +SV + I + V ++ I+ FG I +V C I
Sbjct: 11 AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLP-VDMVLISLCFGLSIATMVQCFGHI 69
Query: 98 SGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGG-GANT 156
SGGHINPAVT + RK+S+ ++V Y+ AQCLGAI G G++ ++ + +GG G T
Sbjct: 70 SGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGIL--YLVTPPSVVGGLGVTT 127
Query: 157 VASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATI 216
V G L E+I TF LV+T+F++ D KR+ V L IGF+V + HL I
Sbjct: 128 VHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSV----ALAIGFSVAIGHLFAI 183
Query: 217 PITGTGINPARSFGAAVIYNNDKAWDDH 244
TG +NPARSFG AVI N W++H
Sbjct: 184 NYTGASMNPARSFGPAVIMGN---WENH 208
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution
By Electron Crystallography
Length = 301
Score = 132 bits (333), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 85/208 (40%), Positives = 122/208 (58%), Gaps = 11/208 (5%)
Query: 38 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGI 97
+F++A+ AEF+A L+F+ +SV + I + V ++ I+ FG I +V C I
Sbjct: 11 AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLP-VDMVLISLCFGLSIATMVQCFGHI 69
Query: 98 SGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGG-GANT 156
SGGHINPAVT + RK+S+ ++V Y+ AQCLGAI G G++ ++ + +GG G T
Sbjct: 70 SGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGIL--YLVTPPSVVGGLGVTT 127
Query: 157 VASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATI 216
V G L E+I TF LV+T+F++ D KR+ V L IGF+V + HL I
Sbjct: 128 VHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVTGSV----ALAIGFSVAIGHLFAI 183
Query: 217 PITGTGINPARSFGAAVIYNNDKAWDDH 244
TG +NPARSFG AVI N W++H
Sbjct: 184 NYTGASMNPARSFGPAVIMGN---WENH 208
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its
Mechanism Of Conductance
Length = 223
Score = 126 bits (316), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 82/208 (39%), Positives = 120/208 (57%), Gaps = 11/208 (5%)
Query: 38 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGI 97
+F++A+ AEF+A L+F+ +S+ + I V ++ I+ FG I +V C I
Sbjct: 2 AFWKAVTAEFLAMLIFVLLSLGSTINWGGTEKPLP-VDMVLISLCFGLSIATMVQCFGHI 60
Query: 98 SGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGG-GANT 156
SGGHINPAVT + RK+S+ ++V Y+ AQCLGAI G G++ ++ + +GG G
Sbjct: 61 SGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGIL--YLVTPPSVVGGLGVTM 118
Query: 157 VASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATI 216
V G L E+I TF LV+T+F++ D KR+ + L IGF+V + HL I
Sbjct: 119 VHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSI----ALAIGFSVAIGHLFAI 174
Query: 217 PITGTGINPARSFGAAVIYNNDKAWDDH 244
TG +NPARSFG AVI N W++H
Sbjct: 175 NYTGASMNPARSFGPAVIMGN---WENH 199
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom
Resolution
pdb|2B6P|A Chain A, X-Ray Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) In
An Open Pore State
pdb|2C32|A Chain A, Co-Axial Association Of Recombinant Eye Lens Aquaporin-0
Observed In Loosely Packed 3d-Crystals
Length = 263
Score = 112 bits (280), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/207 (35%), Positives = 111/207 (53%), Gaps = 10/207 (4%)
Query: 31 MAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVL 90
M EL+ SF+RA+ AEF A+L +++ + + A G + +L +A AFG + L
Sbjct: 1 MWELRSASFWRAICAEFFASLFYVFFGLGASL-----RWAPGPLHVLQVALAFGLALATL 55
Query: 91 VYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSL 150
V ISG H+NPAVTF + ++SL+RA+ YMVAQ LGA+ G ++ +
Sbjct: 56 VQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVTPPAVRG- 114
Query: 151 GGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFM 210
NT+ G + G A EI T V +F+ D +R+ R V L +GF++ +
Sbjct: 115 NLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGFSLTL 170
Query: 211 VHLATIPITGTGINPARSFGAAVIYNN 237
HL + TG G+NPARSF A++ N
Sbjct: 171 GHLFGMYYTGAGMNPARSFAPAILTRN 197
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore
State
Length = 263
Score = 112 bits (280), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/207 (35%), Positives = 111/207 (53%), Gaps = 10/207 (4%)
Query: 31 MAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVL 90
M EL+ SF+RA+ AEF ATL +++ + + A G + +L +A AFG + L
Sbjct: 1 MWELRSASFWRAIFAEFFATLFYVFFGLGASL-----RWAPGPLHVLQVALAFGLALATL 55
Query: 91 VYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSL 150
V ISG H+NPAVTF + ++SL+RA+ Y+VAQ LGA+ G ++ +
Sbjct: 56 VQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRG- 114
Query: 151 GGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFM 210
NT+ G + G A EI T V +F+ D +R+ R V L +GF++ +
Sbjct: 115 NLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGFSLTL 170
Query: 211 VHLATIPITGTGINPARSFGAAVIYNN 237
HL + TG G+NPARSF A++ N
Sbjct: 171 GHLFGMYYTGAGMNPARSFAPAILTRN 197
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|B Chain B, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|C Chain C, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|D Chain D, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
Length = 266
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/202 (38%), Positives = 115/202 (56%), Gaps = 14/202 (6%)
Query: 38 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGI 97
+F +A+ AEF+ATL+F++ + + + K A + L IA AFG I L +
Sbjct: 10 AFLKAVFAEFLATLIFVFFGLGSAL---KWPSALPTI--LQIALAFGLAIGTLAQALGPV 64
Query: 98 SGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTV 157
SGGHINPA+T L + ++SL+RA Y+ AQ +GAI G G++ + N+ G A
Sbjct: 65 SGGHINPAITLALLVGNQISLLRAFFYVAAQLVGAIAGAGIL--YGVAPLNARGNLAVNA 122
Query: 158 ASGY-NKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAP-LPIGFAVFMVHLAT 215
+ +G A+ E+I TF L +F++TD +R++ PV +P L IG +V + HL
Sbjct: 123 LNNNTTQGQAMVVELILTFQLALCIFASTDSRRTS-----PVGSPALSIGLSVTLGHLVG 177
Query: 216 IPITGTGINPARSFGAAVIYNN 237
I TG +NPARSFG AV+ N
Sbjct: 178 IYFTGCSMNPARSFGPAVVMNR 199
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A
Closed Water Pore
Length = 235
Score = 107 bits (267), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 107/200 (53%), Gaps = 10/200 (5%)
Query: 38 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGI 97
SF+RA+ AEF ATL +++ + + A G + +L +A AFG + LV I
Sbjct: 4 SFWRAIFAEFFATLFYVFFGLGASL-----RWAPGPLHVLQVALAFGLALATLVQAVGHI 58
Query: 98 SGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTV 157
SG H+NPAVTF + ++SL+RA+ Y+VAQ LGA+ G ++ + NT+
Sbjct: 59 SGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRG-NLALNTL 117
Query: 158 ASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIP 217
G + G A EI T V +F+ D +R+ R V L +GF++ + HL +
Sbjct: 118 HPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGFSLTLGHLFGMY 173
Query: 218 ITGTGINPARSFGAAVIYNN 237
TG G+NPARSF A++ N
Sbjct: 174 YTGAGMNPARSFAPAILTRN 193
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp Mip) In E. Coli Polar Lipids
Length = 220
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 107/200 (53%), Gaps = 10/200 (5%)
Query: 38 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGI 97
SF+RA+ AEF ATL +++ + + A G + +L +A AFG + LV I
Sbjct: 2 SFWRAIFAEFFATLFYVFFGLGASL-----RWAPGPLHVLQVALAFGLALATLVQAVGHI 56
Query: 98 SGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTV 157
SG H+NPAVTF + ++SL+RA+ Y+VAQ LGA+ G ++ + NT+
Sbjct: 57 SGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRG-NLALNTL 115
Query: 158 ASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIP 217
G + G A EI T V +F+ D +R+ R V L +GF++ + HL +
Sbjct: 116 HPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGFSLTLGHLFGMY 171
Query: 218 ITGTGINPARSFGAAVIYNN 237
TG G+NPARSF A++ N
Sbjct: 172 YTGAGMNPARSFAPAILTRN 191
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 8.0
pdb|2W2E|A Chain A, 1.15 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 3.5
Length = 279
Score = 84.0 bits (206), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 79/240 (32%), Positives = 108/240 (45%), Gaps = 30/240 (12%)
Query: 12 HRHHHGKDYVDPPPAPLIDMA---ELKLWSF--------YRALIAEFVATLLFLYVS-VA 59
++ G+ + P AP I A W F + A+ EFV T LFL+ + V
Sbjct: 6 NQAADGQAEIKPEDAPYITNAYKPAYARWGFGSDSVRNHFIAMSGEFVGTFLFLWSAFVI 65
Query: 60 TVIGHKKQSDACGG---VGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV 116
I ++ GG L+ I++ FG + V V+ T +SGG++NPAVT L LAR +
Sbjct: 66 AQIANQAPETPDGGSNPAQLIMISFGFGFGVMVGVFITYRVSGGNLNPAVTLALVLARAI 125
Query: 117 SLIRAVAYMVAQCLGAICGVGLVKAFMKHEY---NSLGGGANTVASGYNKGSALGAEIIG 173
R + Q + + G A E N+LGGGA ++ L E G
Sbjct: 126 PPFRGILMAFTQIVAGMAAAGAASAMTPGEIAFANALGGGA-------SRTRGLFLEAFG 178
Query: 174 TFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAV 233
T +L TV K A AP IG A+ + HL I TG G+NPARSFG AV
Sbjct: 179 TAILCLTVLMLAVEKHRAT-----WFAPFVIGIALLIAHLICIYYTGAGLNPARSFGPAV 233
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|1RC2|A Chain A, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|2ABM|A Chain A, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|B Chain B, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|C Chain C, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|D Chain D, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|E Chain E, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|F Chain F, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|G Chain G, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|H Chain H, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
Length = 231
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 81/164 (49%), Gaps = 4/164 (2%)
Query: 73 GVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGA 132
G+G G+A AFG + + + ISGGH NPAVT GL+ + V Y++AQ +G
Sbjct: 33 GIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGG 92
Query: 133 ICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSA--TDPKRS 190
I L+ + + ++GY + S G ++ V V V SA
Sbjct: 93 IVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALV-VELVLSAGFLLVIHG 151
Query: 191 ARDSHVPV-LAPLPIGFAVFMVHLATIPITGTGINPARSFGAAV 233
A D P AP+ IG A+ ++HL +IP+T T +NPARS A+
Sbjct: 152 ATDKFAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAI 195
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9F|B Chain B, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9G|A Chain A, Crystal Structure Of Aqpz Mutant L170c Complexed With
Mercury
Length = 234
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 80/164 (48%), Gaps = 4/164 (2%)
Query: 73 GVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGA 132
G+G G+A AFG + + + ISGGH NPAVT GL+ + V Y++AQ +G
Sbjct: 36 GIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGG 95
Query: 133 ICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSA--TDPKRS 190
I L+ + + ++GY + S G ++ V V V SA
Sbjct: 96 IVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALV-VELVLSAGFLLVIHG 154
Query: 191 ARDSHVPV-LAPLPIGFAVFMVHLATIPITGTGINPARSFGAAV 233
A D P AP+ IG A ++HL +IP+T T +NPARS A+
Sbjct: 155 ATDKFAPAGFAPIAIGLACTLIHLISIPVTNTSVNPARSTAVAI 198
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w
pdb|3NK5|B Chain B, Crystal Structure Of Aqpz Mutant F43w
Length = 234
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 81/164 (49%), Gaps = 4/164 (2%)
Query: 73 GVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGA 132
G+G G+A A+G + + + ISGGH NPAVT GL+ + V Y++AQ +G
Sbjct: 36 GIGFAGVALAWGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGG 95
Query: 133 ICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSA--TDPKRS 190
I L+ + + ++GY + S G ++ V V V SA
Sbjct: 96 IVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALV-VELVLSAGFLLVIHG 154
Query: 191 ARDSHVPV-LAPLPIGFAVFMVHLATIPITGTGINPARSFGAAV 233
A D P AP+ IG A+ ++HL +IP+T T +NPARS A+
Sbjct: 155 ATDKFAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAI 198
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c.
pdb|2O9D|B Chain B, Crystal Structure Of Aqpz Mutant T183c
Length = 234
Score = 77.8 bits (190), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 80/164 (48%), Gaps = 4/164 (2%)
Query: 73 GVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGA 132
G+G G+A AFG + + + ISGGH NPAVT GL+ + V Y++AQ +G
Sbjct: 36 GIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGG 95
Query: 133 ICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSA--TDPKRS 190
I L+ + + ++GY + S G ++ V V V SA
Sbjct: 96 IVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALV-VELVLSAGFLLVIHG 154
Query: 191 ARDSHVPV-LAPLPIGFAVFMVHLATIPITGTGINPARSFGAAV 233
A D P AP+ IG A+ ++HL +IP+T +NPARS A+
Sbjct: 155 ATDKFAPAGFAPIAIGLALTLIHLISIPVTNCSVNPARSTAVAI 198
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With
Mercury
Length = 234
Score = 77.4 bits (189), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 80/164 (48%), Gaps = 4/164 (2%)
Query: 73 GVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGA 132
G+G G+A AFG + + + ISGGH NPAVT GL+ + V Y++AQ +G
Sbjct: 36 GIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGG 95
Query: 133 ICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSA--TDPKRS 190
I L+ + + ++GY + S G ++ V V V SA
Sbjct: 96 IVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALV-VELVLSAGFLLVIHG 154
Query: 191 ARDSHVPV-LAPLPIGFAVFMVHLATIPITGTGINPARSFGAAV 233
A D P AP+ IG A+ ++HL +IP+T +NPARS A+
Sbjct: 155 ATDKFAPAGFAPIAIGLALTLIHLISIPVTNCSVNPARSTAVAI 198
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
pdb|3LLQ|B Chain B, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
Length = 256
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 98/199 (49%), Gaps = 14/199 (7%)
Query: 41 RALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGG 100
R L+AEF T ++ + + + G+G G+A AFG + + Y GISGG
Sbjct: 31 RKLLAEFFGTFWLVFGGCGSAVFAAAFPEL--GIGFTGVALAFGLTVLTMAYAVGGISGG 88
Query: 101 HINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYN-SLGGGANT--- 156
H NPAV+ GL +A + V Y++AQ GAI + + LGG A+
Sbjct: 89 HFNPAVSVGLTVAGRFPASSLVPYVIAQVAGAIVAAAALYVIATGKAGIDLGGFASNGYG 148
Query: 157 --VASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLA 214
GY+ SAL EII T + + +T + A AP+ IG A+ ++HL
Sbjct: 149 EHSPGGYSLVSALLIEIILTAFFLIVILGSTHGRVPAG------FAPIAIGLALTLIHLI 202
Query: 215 TIPITGTGINPARSFGAAV 233
+IP+T T +NPARS G A+
Sbjct: 203 SIPVTNTSVNPARSTGQAL 221
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f
pdb|3NKA|B Chain B, Crystal Structure Of Aqpz H174g,T183f
Length = 234
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 79/164 (48%), Gaps = 4/164 (2%)
Query: 73 GVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGA 132
G+G G+A AFG + + + ISGGH NPAVT GL+ + V Y++AQ +G
Sbjct: 36 GIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGG 95
Query: 133 ICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSA--TDPKRS 190
I L+ + + ++GY + S G ++ V V V SA
Sbjct: 96 IVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALV-VELVLSAGFLLVIHG 154
Query: 191 ARDSHVPV-LAPLPIGFAVFMVHLATIPITGTGINPARSFGAAV 233
A D P AP+ IG A+ ++ L +IP+T +NPARS A+
Sbjct: 155 ATDKFAPAGFAPIAIGLALTLIGLISIPVTNFSVNPARSTAVAI 198
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Mutation W48f, F200t
Length = 281
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 94/207 (45%), Gaps = 23/207 (11%)
Query: 44 IAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHIN 103
IAEF+ T L ++ V V K A G I+ FG + + +Y TAG+SG H+N
Sbjct: 12 IAEFLGTGLLIFFGVGCVAALKV---AGASFGQWEISVIFGLGVAMAIYLTAGVSGAHLN 68
Query: 104 PAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLV-----KAFMKHEYN---------- 148
PAVT L+L + + ++V+Q GA C LV F E
Sbjct: 69 PAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVES 128
Query: 149 -SLGGGANTVASGY-NKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGF 206
L G +T + + N A E++ T +L+ + + TD LAPL IG
Sbjct: 129 VDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGP---LAPLLIGL 185
Query: 207 AVFMVHLATIPITGTGINPARSFGAAV 233
+ ++ + P+TGT +NPAR FG V
Sbjct: 186 LIAVIGASMGPLTGTAMNPARDFGPKV 212
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f
pdb|3NKC|B Chain B, Crystal Structure Of Aqpz F43w,H174g,T183f
Length = 234
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 79/164 (48%), Gaps = 4/164 (2%)
Query: 73 GVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGA 132
G+G G+A A+G + + + ISGGH NPAVT GL+ + V Y++AQ +G
Sbjct: 36 GIGFAGVALAWGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGG 95
Query: 133 ICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSA--TDPKRS 190
I L+ + + ++GY + S G ++ V V V SA
Sbjct: 96 IVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALV-VELVLSAGFLLVIHG 154
Query: 191 ARDSHVPV-LAPLPIGFAVFMVHLATIPITGTGINPARSFGAAV 233
A D P AP+ IG A+ ++ L +IP+T +NPARS A+
Sbjct: 155 ATDKFAPAGFAPIAIGLALTLIGLISIPVTNFSVNPARSTAVAI 198
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) With Substrate Glycerol
pdb|1LDA|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(glpf) Without Substrate Glycerol
pdb|1LDI|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Without Substrate Glycerol
Length = 281
Score = 70.5 bits (171), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 94/207 (45%), Gaps = 23/207 (11%)
Query: 44 IAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHIN 103
IAEF+ T L ++ V V K + A G + + W G + + +Y TAG+SG H+N
Sbjct: 12 IAEFLGTGLLIFFGVGCV-AALKVAGASFGQWEISVIWGLG--VAMAIYLTAGVSGAHLN 68
Query: 104 PAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLV-----KAFMKHEYN---------- 148
PAVT L+L + + ++V+Q GA C LV F E
Sbjct: 69 PAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVES 128
Query: 149 -SLGGGANTVASGY-NKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGF 206
L G +T + + N A E++ T +L+ + + TD LAPL IG
Sbjct: 129 VDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGP---LAPLLIGL 185
Query: 207 AVFMVHLATIPITGTGINPARSFGAAV 233
+ ++ + P+TG +NPAR FG V
Sbjct: 186 LIAVIGASMGPLTGFAMNPARDFGPKV 212
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution
pdb|2F2B|A Chain A, Crystal Structure Of Integral Membrane Protein Aquaporin
Aqpm At 1.68a Resolution
Length = 246
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 80/161 (49%), Gaps = 9/161 (5%)
Query: 79 IAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGL 138
I AFG I +Y ISG HINPAVT GL+ +K V Y++AQ LGA G +
Sbjct: 58 IGLAFGFAIAASIYALGNISGCHINPAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGSFI 117
Query: 139 VKAFMKHEYNSLGG-GANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVP 197
++GG GA G + A+ AE++GTF+L+ T+ +R+ +
Sbjct: 118 FLQCAGIGAATVGGLGATAPFPGISYWQAMLAEVVGTFLLMITIMGIAVDERAPKG---- 173
Query: 198 VLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNND 238
A + IG V + I+G+ +NPAR+FG Y ND
Sbjct: 174 -FAGIIIGLTVAGIITTLGNISGSSLNPARTFGP---YLND 210
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|B Chain B, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|C Chain C, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|D Chain D, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|E Chain E, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|F Chain F, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|G Chain G, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|H Chain H, Archaeoglobus Fulgidus Aquaporin
Length = 246
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 74/153 (48%), Gaps = 6/153 (3%)
Query: 79 IAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGL 138
I AF I ++Y ISG HINPAVT L+ + V Y+VAQ +GA G L
Sbjct: 59 IGMAFALAIAAVIYSLGRISGAHINPAVTIALWSIGRFPGREVVPYIVAQFIGAALGSLL 118
Query: 139 VKAFMKHEYNSLGG-GANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVP 197
A + ++GG GA G G A+ E IGTF+L+ + +R+ P
Sbjct: 119 FLACVGPAAATVGGLGATAPFPGIGYGQAILTEAIGTFLLMLVIMGVAVDERAP-----P 173
Query: 198 VLAPLPIGFAVFMVHLATIPITGTGINPARSFG 230
A L IG V + ITG+ +NPAR+FG
Sbjct: 174 GFAGLVIGLTVGGIITTIGNITGSSLNPARTFG 206
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 8/95 (8%)
Query: 41 RALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGG 100
+A++ E + T L + V + + + G L I GG+I + I+G
Sbjct: 146 QAILTEAIGTFLLMLVIMGVAVDERAPPGFAG----LVIGLTVGGIITTI----GNITGS 197
Query: 101 HINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICG 135
+NPA TFG +L + I Y +G I G
Sbjct: 198 SLNPARTFGPYLGDSLMGINLWQYFPIYVIGPIVG 232
>pdb|3C02|A Chain A, X-Ray Structure Of The Aquaglyceroporin From Plasmodium
Falciparum
Length = 258
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 96/237 (40%), Gaps = 16/237 (6%)
Query: 38 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGI 97
S+ R I EF+ T + +++ + + G L + W G +F + +A +
Sbjct: 8 SYVREFIGEFLGTFVLMFLGEGAT-ANFHTTGLSGDWYKLCLGW--GLAVFFGILVSAKL 64
Query: 98 SGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGV----GLVKAFMKHEYNSLGGG 153
SG H+N AV+ GL K L + Y AQ LGA G GL F+ +
Sbjct: 65 SGAHLNLAVSIGLSSINKFDLKKIPVYFFAQLLGAFVGTSTVYGLYHGFISNSKIPQFAW 124
Query: 154 ANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHL 213
+ + A E+I T +L+ + D + H+ L+ + +G + + +
Sbjct: 125 ETSRNPSISLTGAFFNELILTGILLLVILVVVDENICGK-FHILKLSSV-VGLIILCIGI 182
Query: 214 ATIPITGTGINPARSFGAAVI----YNNDKAWDDHVRKKLCISEFCV--CLLC-FYD 263
TG +NP+R G+ + Y D D+ + + CV + C FYD
Sbjct: 183 TFGGNTGFALNPSRDLGSRFLSLIAYGKDTFTKDNFYFWVPLVAPCVGSVVFCQFYD 239
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.141 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,413,959
Number of Sequences: 62578
Number of extensions: 346020
Number of successful extensions: 2325
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2217
Number of HSP's gapped (non-prelim): 40
length of query: 267
length of database: 14,973,337
effective HSP length: 97
effective length of query: 170
effective length of database: 8,903,271
effective search space: 1513556070
effective search space used: 1513556070
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)