Query 024444
Match_columns 267
No_of_seqs 181 out of 1350
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 08:19:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024444.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024444hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cn5_A Aquaporin; membrane pro 100.0 7.5E-61 2.6E-65 426.6 16.2 264 1-266 24-287 (304)
2 3gd8_A Aquaporin-4; proton exc 100.0 5.8E-55 2E-59 374.6 21.9 221 38-267 2-222 (223)
3 3iyz_A Aquaporin-4; water tran 100.0 7.3E-55 2.5E-59 390.3 23.3 226 32-266 44-269 (340)
4 2zz9_A Aquaporin-4; water tran 100.0 1.1E-53 3.6E-58 379.8 21.5 228 30-266 3-230 (301)
5 3llq_A Aquaporin Z 2; aquapori 100.0 5.4E-54 1.8E-58 373.9 17.1 223 36-267 26-254 (256)
6 1j4n_A Aquaporin 1; membrane p 100.0 4.3E-53 1.5E-57 372.6 22.4 227 32-266 3-233 (271)
7 3d9s_A Aquaporin-5, AQP-5; aqu 100.0 5.8E-53 2E-57 370.4 21.6 223 31-266 3-226 (266)
8 2b6o_A Aquaporin-0, lens fiber 100.0 2.6E-52 8.9E-57 366.1 24.2 222 32-266 2-223 (263)
9 2w2e_A AQY1, aquaporin, aquapo 100.0 5.9E-53 2E-57 372.4 19.9 220 36-266 41-264 (279)
10 2o9g_A Aquaporin Z; integral m 100.0 8.4E-53 2.9E-57 363.7 18.4 220 39-267 4-231 (234)
11 1ldf_A Glycerol uptake facilit 100.0 2.5E-52 8.4E-57 369.9 17.0 224 37-266 5-255 (281)
12 2f2b_A Aquaporin AQPM; protein 100.0 3.1E-51 1.1E-55 356.7 18.9 225 38-267 3-245 (246)
13 3c02_A Aquaglyceroporin; membr 100.0 6.3E-52 2.1E-56 363.1 13.3 224 37-266 7-242 (258)
14 2f2b_A Aquaporin AQPM; protein 99.6 3E-15 1E-19 129.8 10.9 99 38-144 142-245 (246)
15 2w2e_A AQY1, aquaporin, aquapo 99.4 4.3E-12 1.5E-16 111.6 11.6 102 38-147 167-268 (279)
16 2o9g_A Aquaporin Z; integral m 99.3 2.8E-12 9.4E-17 110.3 9.8 99 38-145 133-232 (234)
17 3llq_A Aquaporin Z 2; aquapori 99.3 2.3E-12 7.8E-17 111.9 9.1 98 37-143 155-253 (256)
18 2b6o_A Aquaporin-0, lens fiber 99.3 4E-12 1.4E-16 111.0 10.6 100 38-145 126-225 (263)
19 3d9s_A Aquaporin-5, AQP-5; aqu 99.3 6.4E-12 2.2E-16 109.8 10.8 100 38-145 128-228 (266)
20 3gd8_A Aquaporin-4; proton exc 99.3 9.8E-12 3.3E-16 106.1 10.2 98 38-143 124-221 (223)
21 3iyz_A Aquaporin-4; water tran 99.3 9.2E-12 3.1E-16 111.5 9.8 99 38-144 172-270 (340)
22 2zz9_A Aquaporin-4; water tran 99.3 9.8E-12 3.3E-16 110.2 9.9 99 38-144 133-231 (301)
23 3cn5_A Aquaporin; membrane pro 99.3 6.3E-12 2.2E-16 111.6 7.3 105 38-145 183-289 (304)
24 1ldf_A Glycerol uptake facilit 99.2 2.6E-11 9E-16 106.9 10.3 103 38-146 144-258 (281)
25 1j4n_A Aquaporin 1; membrane p 99.2 2.1E-11 7.3E-16 106.9 9.0 98 40-145 138-235 (271)
26 3c02_A Aquaglyceroporin; membr 99.2 3.9E-11 1.3E-15 104.5 10.1 103 40-147 135-246 (258)
27 3kcu_A Probable formate transp 89.2 9.9 0.00034 32.8 13.6 109 76-188 68-186 (285)
28 3kly_A Putative formate transp 76.0 37 0.0013 29.1 12.7 108 76-188 67-185 (280)
29 3tds_E Formate/nitrite transpo 71.8 12 0.00042 31.9 7.5 110 74-186 62-179 (268)
30 3s2u_A UDP-N-acetylglucosamine 42.8 2.4 8.4E-05 37.5 -2.1 21 95-115 9-29 (365)
31 4fc4_A Nitrite transporter NIR 33.9 2.1E+02 0.0072 24.0 10.6 108 76-186 58-173 (261)
32 1pfi_A Major coat protein of P 27.5 16 0.00055 21.8 0.4 23 245-267 23-45 (46)
No 1
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A
Probab=100.00 E-value=7.5e-61 Score=426.56 Aligned_cols=264 Identities=77% Similarity=1.247 Sum_probs=206.1
Q ss_pred CccccccccccccCCCCCCCCCCCCCCccchhhcccHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCcchHHHH
Q 024444 1 MSKEVNEEGQTHRHHHGKDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIA 80 (267)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~EflgT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (267)
|+||+++ .+ ....+.|++++|++.+..+.+|+++++++|++++||+||++|+|++++++......+++....+.+.++
T Consensus 24 ~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~e~~~~~~~r~~lAEfiGT~lLv~~g~gsv~~~~~~~~~~~~~g~l~ia 101 (304)
T 3cn5_A 24 MSKEVSE-EA-QAHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIA 101 (304)
T ss_dssp ---------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSTTCSCHHHHHH
T ss_pred HHHHhhc-cc-cccccCCCccCCCcccccCccccccHHHHHHHHHHHHHHHHHHHHHhHHHeEeccccCCCCCCCceeeh
Confidence 5666633 22 122346899999999999999999999999999999999999999999877544332233456788899
Q ss_pred HHHHHHHHHHHHHHhccCCCccChHHHHHHHHhccCcchhHHHHHHHHhHHHHHHHHHHHHhhchhhhhcCCCcccccCC
Q 024444 81 WAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASG 160 (267)
Q Consensus 81 l~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~~~~~~~~ 160 (267)
+++|+++++.+|+++++||||+|||||+++++.|+++|++++.|+++|++|+++|+.+++.++++.++..+.+.+.+.++
T Consensus 102 la~Glav~~~v~~~g~iSGaHlNPAVTla~~l~g~~~~~~~~~YiiAQ~lGAi~Ga~lv~~~~~~~~~~~~~g~~~~~~~ 181 (304)
T 3cn5_A 102 WAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALG 181 (304)
T ss_dssp HHHHHHHHHHHHHHTTTTCCCCSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHTTTTCCCCCTT
T ss_pred hhhhhhhheeeeEeeccCCCccCcHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999998776665555556677
Q ss_pred CccchhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhCCCcCccchhhhHHHHHhcCCCCC
Q 024444 161 YNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKA 240 (267)
Q Consensus 161 ~~~~~~~~~E~~~T~~l~~~il~~~~~~~~~~~~~~~~l~~~~igl~v~~~~~~~~~~tG~~~NPAr~lg~~i~~~~~~~ 240 (267)
.+..++|+.|+++||+|+++|+.++|+|+..+.++.+.+.|+.||+++.+++++.+++||++||||||||||++++++.+
T Consensus 182 ~s~~~~f~~E~i~TfiLv~~Il~~~d~~~~~~~~~~~~lapl~IGl~V~~~~l~~g~~TG~amNPAR~~GPal~~~~~~~ 261 (304)
T 3cn5_A 182 YNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKV 261 (304)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTEEEEEESTTSCCEEECHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHCCHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHhheecCccCCCCcccccchHHHHHHHHHHHHHhccCCCccccChHHHHHHHHHHccCCC
Confidence 88999999999999999999999888765543222244899999999999999999999999999999999999654457
Q ss_pred CCcceEEeechhHHHHHHHHHHHHhh
Q 024444 241 WDDHVRKKLCISEFCVCLLCFYDILN 266 (267)
Q Consensus 241 ~~~~wVy~v~P~~Ga~~a~~ly~~~~ 266 (267)
|+++||||++|++|+++|+++|+++.
T Consensus 262 w~~~WvywvgPiiGa~laa~~y~~l~ 287 (304)
T 3cn5_A 262 WDDQWIFWVGPFIGAAVAAAYHQYVL 287 (304)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHTTS
T ss_pred cCceEEEeehHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999874
No 2
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens}
Probab=100.00 E-value=5.8e-55 Score=374.57 Aligned_cols=221 Identities=37% Similarity=0.561 Sum_probs=193.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHHHhccCCCccChHHHHHHHHhccCc
Q 024444 38 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVS 117 (267)
Q Consensus 38 ~~~~~~~~EflgT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g~~~ 117 (267)
+++|++++||+||++|++++++++.+.. .+++....+.+.+++++|+++++.+++++++||||+|||||+++++.|+++
T Consensus 2 ~~~r~~~aEfiGT~~lv~~g~g~~~~~~-~~~~~~~~~~~~ia~~~Gl~v~~~v~~~g~iSGaHlNPAVTla~~~~g~~~ 80 (223)
T 3gd8_A 2 AFWKAVTAEFLAMLIFVLLSLGSTINWG-GTEKPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKIS 80 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCTT-TTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCCCCCCcchHHHHHHHHHHHHHHHheecccccceEcHHHHHHHHHcCCCC
Confidence 5789999999999999999999887542 222234456889999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHhHHHHHHHHHHHHhhchhhhhcCCCcccccCCCccchhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 024444 118 LIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVP 197 (267)
Q Consensus 118 ~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~T~~l~~~il~~~~~~~~~~~~~~~ 197 (267)
|++.+.|+++|++|+++|+.+++.+++++... ..+.+.+.++.+..++++.|+++||+|+++++.+.|+|++.. +
T Consensus 81 ~~~~~~Yi~AQ~lGA~~ga~lv~~~~~~~~~~-~lg~~~~~~~~s~~~~~~~E~i~Tf~Lv~~i~~~~~~~~~~~----~ 155 (223)
T 3gd8_A 81 IAKSVFYIAAQCLGAIIGAGILYLVTPPSVVG-GLGVTMVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDV----T 155 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHT-TTTCCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHTCTTCSCC----C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccc-ceeeccCCCccCHHHHHHHHHHHHHHHHHHHHHHhccccCCc----c
Confidence 99999999999999999999999999865432 234455667788899999999999999999999988876532 3
Q ss_pred CchhHHHHHHHHHHHHHhhCCCcCccchhhhHHHHHhcCCCCCCCcceEEeechhHHHHHHHHHHHHhhC
Q 024444 198 VLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHVRKKLCISEFCVCLLCFYDILNK 267 (267)
Q Consensus 198 ~l~~~~igl~v~~~~~~~~~~tG~~~NPAr~lg~~i~~~~~~~~~~~wVy~v~P~~Ga~~a~~ly~~~~~ 267 (267)
.+.|+.||+++...+..+++.||++||||||||||++.+ +|+++||||++|++|+++++++||++.+
T Consensus 156 ~~~pl~iGl~v~~~~~~g~~~TG~a~NPAR~~GP~l~~~---~w~~~Wvy~vgP~~Ga~la~~~y~~~~~ 222 (223)
T 3gd8_A 156 GSIALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMG---NWENHWIYWVGPIIGAVLAGGLYEYVFC 222 (223)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHT---CCTTTTHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCccHHHHHHHHHHHHhccCCccccccHHHHHHHHHHhc---CCCcEEeehhHHHHHHHHHHHHHHHHcC
Confidence 478999999998888888889999999999999999975 7999999999999999999999998764
No 3
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=100.00 E-value=7.3e-55 Score=390.28 Aligned_cols=226 Identities=38% Similarity=0.554 Sum_probs=196.3
Q ss_pred hhcccHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHHHhccCCCccChHHHHHHH
Q 024444 32 AELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLF 111 (267)
Q Consensus 32 ~~~~~~~~~~~~~~EflgT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v~~~i~~~~~iSGah~NPavTla~~ 111 (267)
++....+++|++++||+|||+|+|++++++.+.. ..++....+++.+++++|+++++.+|+++++||||+|||||++++
T Consensus 44 ~~~~~~~l~r~~lAEflGT~lLV~~G~Gs~a~~~-~~~~~~~~g~l~Iala~GlaV~~~v~~~g~ISGAHlNPAVTlal~ 122 (340)
T 3iyz_A 44 KGVWTQAFWKAVTAEFLAMLIFVLLSVGSTINWG-GSENPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMV 122 (340)
T ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCCCCCCcchHHHHHHHHHHHHHheeEeeccCcCeeChHHHHHHH
Confidence 4555678999999999999999999999887542 112223456788999999999999999999999999999999999
Q ss_pred HhccCcchhHHHHHHHHhHHHHHHHHHHHHhhchhhhhcCCCcccccCCCccchhHHHHHHHHHHHHHHHHHhcCCCCCC
Q 024444 112 LARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSA 191 (267)
Q Consensus 112 l~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~T~~l~~~il~~~~~~~~~ 191 (267)
+.|+++|.+++.|+++|++||++|+++++.++++.... ..+.+.+.++.+..++|+.|+++||+|+++|+.+.|+++..
T Consensus 123 l~G~~~~~~~~~YiiAQ~lGA~~GA~lv~~~~~~~~~~-~lg~~~~~~~~s~~~~f~~E~i~Tf~Lv~~Ila~~d~~~~~ 201 (340)
T 3iyz_A 123 CTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVG-GLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTD 201 (340)
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcchhhcC-ceeeccCCCccCHHHHHHHHHHHHHHHHHHHHHhhcCccCC
Confidence 99999999999999999999999999999998764321 22344556778899999999999999999999998887653
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhhCCCcCccchhhhHHHHHhcCCCCCCCcceEEeechhHHHHHHHHHHHHhh
Q 024444 192 RDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHVRKKLCISEFCVCLLCFYDILN 266 (267)
Q Consensus 192 ~~~~~~~l~~~~igl~v~~~~~~~~~~tG~~~NPAr~lg~~i~~~~~~~~~~~wVy~v~P~~Ga~~a~~ly~~~~ 266 (267)
. ..+.|+.||+++.++.+.++++||++||||||||||++.+ +|+++||||+||++|+++|+++|+++.
T Consensus 202 ~----~~~~pl~IGl~v~i~~~~g~~~TG~amNPARdlGPal~~~---~w~~~WVywvgPiiGailaallY~~l~ 269 (340)
T 3iyz_A 202 V----TGSVALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMG---NWENHWIYWVGPIIGAVLAGALYEYVF 269 (340)
T ss_pred c----ccchhhHHHHHHHHHHHhccCCccccccHHHHHHHHHHcc---CCCcEeehhHHHHHHHHHHHHHHHHHh
Confidence 2 3468999999998888888899999999999999999965 699999999999999999999999874
No 4
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A
Probab=100.00 E-value=1.1e-53 Score=379.75 Aligned_cols=228 Identities=37% Similarity=0.548 Sum_probs=195.3
Q ss_pred chhhcccHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHHHhccCCCccChHHHHH
Q 024444 30 DMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFG 109 (267)
Q Consensus 30 ~~~~~~~~~~~~~~~~EflgT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v~~~i~~~~~iSGah~NPavTla 109 (267)
+.++..+.+++|++++||+|||+|+|++++++...... ++....+.+.+++++|+++++.+|+++++||||+|||||++
T Consensus 3 ~~~~~~~~~~~r~~lAEflGT~lLv~~g~Gs~~~~~~~-~~~~~~~~l~iala~Glav~~~v~~~g~iSGaHlNPAVTla 81 (301)
T 2zz9_A 3 AFKGVWTQAFWKAVTAEFLAMLIFVLLSVGSTINWGGS-ENPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVA 81 (301)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHTTSCCTTCC--CCCCCCHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHHHHHhccccC-CCCCCcchHHHHHHHHHHHHHhhheeccCCcceeChHHHHH
Confidence 34566678899999999999999999999987654322 12234567889999999999999999999999999999999
Q ss_pred HHHhccCcchhHHHHHHHHhHHHHHHHHHHHHhhchhhhhcCCCcccccCCCccchhHHHHHHHHHHHHHHHHHhcCCCC
Q 024444 110 LFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKR 189 (267)
Q Consensus 110 ~~l~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~T~~l~~~il~~~~~~~ 189 (267)
+++.|+++|++++.|+++|++|+++|+.+++.++++.... ..+.+.+.++.+..++|+.|+++||+|+++++.+.|+++
T Consensus 82 ~~~~g~~~~~~~~~YiiAQ~lGAi~Ga~lv~~~~~~~~~~-~~g~~~~~~~~s~~~~f~~E~i~Tf~Lv~~Il~~~d~~~ 160 (301)
T 2zz9_A 82 MVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVG-GLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDDKR 160 (301)
T ss_dssp HHHTSSSCTTTTHHHHHHHHHHHHHHHHHHHTTSCSCGGG-TSSCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHSCSSS
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-ceeeecCCcccchHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999999999999865322 234455567788899999999999999999999888766
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHhhCCCcCccchhhhHHHHHhcCCCCCCCcceEEeechhHHHHHHHHHHHHhh
Q 024444 190 SARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHVRKKLCISEFCVCLLCFYDILN 266 (267)
Q Consensus 190 ~~~~~~~~~l~~~~igl~v~~~~~~~~~~tG~~~NPAr~lg~~i~~~~~~~~~~~wVy~v~P~~Ga~~a~~ly~~~~ 266 (267)
... +.+.|+.||+++.+....++++||++||||||||||++.+ +|+++||||++|++|+++|+++|+++.
T Consensus 161 ~~~----~~~~pl~IGl~v~i~~~~g~~~TG~a~NPAR~~GPal~~~---~w~~~WVy~vgPiiGailaa~ly~~l~ 230 (301)
T 2zz9_A 161 TDV----TGSVALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMG---NWENHWIYWVGPIIGAVLAGALYEYVF 230 (301)
T ss_dssp SCC----SSCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC---CCTTTTHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCc----cchHhHHHHHHHHHHHHHhcCCcccccCcHHHHHHHHHhC---CCcceeeeeeHHHHHHHHHHHHHHHHh
Confidence 432 3578999999998888888899999999999999999975 699999999999999999999999874
No 5
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=100.00 E-value=5.4e-54 Score=373.93 Aligned_cols=223 Identities=30% Similarity=0.432 Sum_probs=188.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHHHhccCCCccChHHHHHHHHhcc
Q 024444 36 LWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARK 115 (267)
Q Consensus 36 ~~~~~~~~~~EflgT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g~ 115 (267)
+.+++|++++||+||++|++++++++......+ ..+.+++.+++++|+++++.+|+++++||||+|||||+++++.|+
T Consensus 26 ~~~l~r~~laEflGT~lLv~~G~G~~~~~~~~~--~~~~~~l~iala~Glav~~~i~~~g~iSGaHlNPAVTla~~~~g~ 103 (256)
T 3llq_A 26 SYVMGRKLLAEFFGTFWLVFGGCGSAVFAAAFP--ELGIGFTGVALAFGLTVLTMAYAVGGISGGHFNPAVSVGLTVAGR 103 (256)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHTTCT--TTCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--CCCccHHHHHHHHHHHHHHHHheeeccccceEchHHHHHHHHhcC
Confidence 456789999999999999999999865333221 234568889999999999999999999999999999999999999
Q ss_pred CcchhHHHHHHHHhHHHHHHHHHHHHhhchh--hhhcCC---Cc-ccccCCCccchhHHHHHHHHHHHHHHHHHhcCCCC
Q 024444 116 VSLIRAVAYMVAQCLGAICGVGLVKAFMKHE--YNSLGG---GA-NTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKR 189 (267)
Q Consensus 116 ~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~--~~~~~~---~~-~~~~~~~~~~~~~~~E~~~T~~l~~~il~~~~~~~ 189 (267)
++|++++.|+++|++|+++|+.+++.++++. ++..+. +. ++.+...+..++|+.|+++||+|+++++.+.|+|+
T Consensus 104 ~~~~~~~~YiiAQ~lGA~~ga~lv~~~~~~~~~~~~~~~~~~~~~~t~p~~~s~~~~f~~E~i~Tf~Lv~~il~~~d~~~ 183 (256)
T 3llq_A 104 FPASSLVPYVIAQVAGAIVAAAALYVIATGKAGIDLGGFASNGYGEHSPGGYSLVSALLIEIILTAFFLIVILGSTHGRV 183 (256)
T ss_dssp SCGGGHHHHHHHHHHHHHHHHHHHHHHHTTBTTCCCTTTTCCCCGGGSTTCCCHHHHHHHHHHHHHHHHHHHHHHHSTTS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccccccccCCcccCHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999998632 221111 11 12223567889999999999999999999988764
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHhhCCCcCccchhhhHHHHHhcCCCCCCCcceEEeechhHHHHHHHHHHHHhhC
Q 024444 190 SARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHVRKKLCISEFCVCLLCFYDILNK 267 (267)
Q Consensus 190 ~~~~~~~~~l~~~~igl~v~~~~~~~~~~tG~~~NPAr~lg~~i~~~~~~~~~~~wVy~v~P~~Ga~~a~~ly~~~~~ 267 (267)
. +.+.|+.||+++.++.++.+++||++||||||||||++.+ +.+|+++||||++|++|+++|+++||++++
T Consensus 184 ~------~~~~pl~IGl~v~~i~~~~g~~TG~a~NPAR~lGPal~~g-~~~~~~~WVy~vgPi~Ga~la~~~y~~l~~ 254 (256)
T 3llq_A 184 P------AGFAPIAIGLALTLIHLISIPVTNTSVNPARSTGQALFVG-GWALQQLWLFWLAPIVGGAAGAVIWKLFGE 254 (256)
T ss_dssp C------TTCHHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHC-HHHHHHTTHHHHHHHHHHHHHHHHHHHHTS
T ss_pred C------ccchhHHHHHHHHHHHHHhccccccccChHHHHHHHHHcC-CCcccceeeeeeHHHHHHHHHHHHHHHhcc
Confidence 3 3588999999999999999999999999999999999975 245779999999999999999999999853
No 6
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A
Probab=100.00 E-value=4.3e-53 Score=372.61 Aligned_cols=227 Identities=37% Similarity=0.588 Sum_probs=193.7
Q ss_pred hhcccHHHHHHHHHHHHHHHHHHHHHHHHhhccccC----CCCCCCcchHHHHHHHHHHHHHHHHHHhccCCCccChHHH
Q 024444 32 AELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQ----SDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVT 107 (267)
Q Consensus 32 ~~~~~~~~~~~~~~EflgT~~lv~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~g~~v~~~i~~~~~iSGah~NPavT 107 (267)
+|.++++++|++++||+||++|+|++++++...... .+.....+.+.+++++|+++++.+|+++++||||+|||||
T Consensus 3 ~e~~~~~~~r~~~aEflGT~llv~~g~g~~~~~~~~~~~~~~~g~~~~~~~ial~~Gl~v~~~i~~~g~iSGaHlNPAVT 82 (271)
T 1j4n_A 3 SEFKKKLFWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVT 82 (271)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCCSSCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCcccchHHHHHHHHHHHHHHHHHHhcCCcceEcHHHH
Confidence 355667899999999999999999999987654321 1111223577899999999999999999999999999999
Q ss_pred HHHHHhccCcchhHHHHHHHHhHHHHHHHHHHHHhhchhhhhcCCCcccccCCCccchhHHHHHHHHHHHHHHHHHhcCC
Q 024444 108 FGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDP 187 (267)
Q Consensus 108 la~~l~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~T~~l~~~il~~~~~ 187 (267)
+++++.|+++|++++.|+++|++|+++|+.+++.++++... ...+.+.+.++.+..++++.|+++|++|+++++.+.|+
T Consensus 83 la~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~E~i~T~~Lv~~i~~~~d~ 161 (271)
T 1j4n_A 83 LGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPD-NSLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTDR 161 (271)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTT-CCTTCCCCCTTCCTTGGGHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc-cccccccCCCccchHHHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999864321 12233445567788999999999999999999999887
Q ss_pred CCCCCCCCCCCchhHHHHHHHHHHHHHhhCCCcCccchhhhHHHHHhcCCCCCCCcceEEeechhHHHHHHHHHHHHhh
Q 024444 188 KRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHVRKKLCISEFCVCLLCFYDILN 266 (267)
Q Consensus 188 ~~~~~~~~~~~l~~~~igl~v~~~~~~~~~~tG~~~NPAr~lg~~i~~~~~~~~~~~wVy~v~P~~Ga~~a~~ly~~~~ 266 (267)
|+... +.+.|+.||+++......++++||++||||||||||++.+ +|+++||||++|++|+++++++|+++.
T Consensus 162 ~~~~~----~~~~pl~IGl~v~~~~~~~~~~TG~a~NPAR~~Gpal~~~---~~~~~wv~~vgP~~Ga~la~~~y~~~~ 233 (271)
T 1j4n_A 162 RRRDL----GGSGPLAIGFSVALGHLLAIDYTGCGINPARSFGSSVITH---NFQDHWIFWVGPFIGAALAVLIYDFIL 233 (271)
T ss_dssp SCCCC----CSCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHTT---CCTTTTHHHHHHHHHHHHHHHHHHTTT
T ss_pred cCCCc----cccHHHHHHHHHHHHHHhccCCCccccChHHHHHHHHHhC---CCcceeHHHHHHHHHHHHHHHHHHHHh
Confidence 66432 3589999999999888888899999999999999999964 799999999999999999999999874
No 7
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.8e-53 Score=370.41 Aligned_cols=223 Identities=34% Similarity=0.475 Sum_probs=196.2
Q ss_pred hhhcccHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHHHhccCCCccChHHHHHH
Q 024444 31 MAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGL 110 (267)
Q Consensus 31 ~~~~~~~~~~~~~~~EflgT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v~~~i~~~~~iSGah~NPavTla~ 110 (267)
.+|+++++++|++++||+||++|+|++++++..... ...+.+.+++++|+++++.+|+++++||||+|||||+++
T Consensus 3 ~~e~~~~~~~r~~laEfiGT~~lv~~g~g~~~~~~~-----~~~~~l~ial~~Glav~~~i~~~g~iSGaHlNPAVTla~ 77 (266)
T 3d9s_A 3 KKEVCSVAFLKAVFAEFLATLIFVFFGLGSALKWPS-----ALPTILQIALAFGLAIGTLAQALGPVSGGHINPAITLAL 77 (266)
T ss_dssp HHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHSCCSS-----SCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_pred hhhhhChHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-----CCccHHHHHHHHHHHHHHHHHHHcccCcceECHHHHHHH
Confidence 457778899999999999999999999998753211 224577899999999999999999999999999999999
Q ss_pred HHhccCcchhHHHHHHHHhHHHHHHHHHHHHhhchhhhhcCCCcccccCCCccchhHHHHHHHHHHHHHHHHHhcCCCCC
Q 024444 111 FLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRS 190 (267)
Q Consensus 111 ~l~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~T~~l~~~il~~~~~~~~ 190 (267)
++.|+++|++++.|+++|++|+++|+.+++.++++... ...+.+.+.++.+..++|+.|+++||+|+++++.+.|+++.
T Consensus 78 ~~~g~~~~~~~~~Yi~AQ~lGA~~ga~l~~~~~~~~~~-~~~g~~~~~~~~s~~~~~~~E~i~Tf~Lv~~il~~~d~~~~ 156 (266)
T 3d9s_A 78 LVGNQISLLRAFFYVAAQLVGAIAGAGILYGVAPLNAR-GNLAVNALNNNTTQGQAMVVELILTFQLALCIFASTDSRRT 156 (266)
T ss_dssp HHTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH-TTTTCCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccc-CceeeccCCccccHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 99999999999999999999999999999999986432 22344445567788999999999999999999999887665
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHhhCCCcCccchhhhHHHHHhcCCCCCCCc-ceEEeechhHHHHHHHHHHHHhh
Q 024444 191 ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDD-HVRKKLCISEFCVCLLCFYDILN 266 (267)
Q Consensus 191 ~~~~~~~~l~~~~igl~v~~~~~~~~~~tG~~~NPAr~lg~~i~~~~~~~~~~-~wVy~v~P~~Ga~~a~~ly~~~~ 266 (267)
.. +.+.|+.||+++.++++.++++||++||||||||||++.+ +|++ +||||++|++|+++|+++|+++.
T Consensus 157 ~~----~~~~pl~IGl~v~~~~~~~g~~TG~a~NPAR~~GPal~~~---~~~~~~Wvy~vgP~~Ga~la~~~y~~l~ 226 (266)
T 3d9s_A 157 SP----VGSPALSIGLSVTLGHLVGIYFTGCSMNPARSFGPAVVMN---RFSPAHWVFWVGPIVGAVLAAILYFYLL 226 (266)
T ss_dssp SC----CCCHHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHT---CCCTTHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred Cc----cchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHcC---CcccCEeeeehHHHHHHHHHHHHHHHHh
Confidence 32 3479999999999999999999999999999999999975 7888 99999999999999999999874
No 8
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A*
Probab=100.00 E-value=2.6e-52 Score=366.14 Aligned_cols=222 Identities=33% Similarity=0.495 Sum_probs=193.6
Q ss_pred hhcccHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHHHhccCCCccChHHHHHHH
Q 024444 32 AELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLF 111 (267)
Q Consensus 32 ~~~~~~~~~~~~~~EflgT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v~~~i~~~~~iSGah~NPavTla~~ 111 (267)
+|.+.++++|++++||+|||+|++++++++...+ ....+.+.+++++|+++++.+++++++||||+|||||++++
T Consensus 2 ~e~~~~~~~~~~laEfiGT~~Lv~~g~g~~~~~~-----~~~~~~l~i~l~~Gl~v~~~i~~~g~iSGahlNPAVTla~~ 76 (263)
T 2b6o_A 2 WELRSASFWRAIFAEFFATLFYVFFGLGASLRWA-----PGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFL 76 (263)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC-----SSSCHHHHHHHHHHHHHHHHHHHGGGTTCCCCSHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CCCcchHHHHHHHHHHHHHHHHHhhccCcCeeChHHHHHHH
Confidence 3556678999999999999999999999875321 12345778999999999999999999999999999999999
Q ss_pred HhccCcchhHHHHHHHHhHHHHHHHHHHHHhhchhhhhcCCCcccccCCCccchhHHHHHHHHHHHHHHHHHhcCCCCCC
Q 024444 112 LARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSA 191 (267)
Q Consensus 112 l~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~T~~l~~~il~~~~~~~~~ 191 (267)
+.|+++|.++++|+++|++|+++|+.+++.++++.... ..+.+.+.++.+..++|+.|+++||+|+++++.+.|+++..
T Consensus 77 ~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~E~i~Tf~Lv~~il~~~d~~~~~ 155 (263)
T 2b6o_A 77 VGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRG-NLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNG 155 (263)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTCS-SCSCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTSCS
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHccccccc-ccccccCCccccHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 99999999999999999999999999999999865322 23344556778889999999999999999999998876643
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhhCCCcCccchhhhHHHHHhcCCCCCCCcceEEeechhHHHHHHHHHHHHhh
Q 024444 192 RDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHVRKKLCISEFCVCLLCFYDILN 266 (267)
Q Consensus 192 ~~~~~~~l~~~~igl~v~~~~~~~~~~tG~~~NPAr~lg~~i~~~~~~~~~~~wVy~v~P~~Ga~~a~~ly~~~~ 266 (267)
. +.+.|+.||+++.++++.++++||++||||||||||++.+ +|+|+||||++|++|+++++++|+++.
T Consensus 156 ~----~~~~pl~IGl~v~~~~~~~g~~TG~a~NPAR~~GPal~~~---~~~~~Wvy~vgP~~Ga~la~~~y~~l~ 223 (263)
T 2b6o_A 156 R----LGSVALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTR---NFTNHWVYWVGPVIGAGLGSLLYDFLL 223 (263)
T ss_dssp S----CCCHHHHHHHHHHHHHHHHTTTSTTCCCHHHHHHHHHHHT---CCTTCTHHHHHHHHHHHHHHHHHHTTT
T ss_pred C----cccHHHHHHHHHHHHHHhccCCCcccccHHHHHHHHHHcC---CccceeHHHHHHHHHHHHHHHHHHHHh
Confidence 2 3588999999999999999999999999999999999975 799999999999999999999999873
No 9
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A*
Probab=100.00 E-value=5.9e-53 Score=372.45 Aligned_cols=220 Identities=30% Similarity=0.413 Sum_probs=188.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhh--cccc--CCCCCCCcchHHHHHHHHHHHHHHHHHHhccCCCccChHHHHHHH
Q 024444 36 LWSFYRALIAEFVATLLFLYVSVATVI--GHKK--QSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLF 111 (267)
Q Consensus 36 ~~~~~~~~~~EflgT~~lv~~~~~~~~--~~~~--~~~~~~~~~~~~~~l~~g~~v~~~i~~~~~iSGah~NPavTla~~ 111 (267)
.++.+|++++||+||++|+|++++++. .... .+++....+.+.+++++|+++++.+|+++++||||+|||||++++
T Consensus 41 ~~~~~r~~laEfiGT~~Lv~~g~g~~~~~~~~~~~~~~~~~~~~~l~iala~Glav~~~v~~~g~iSGaHlNPAVTla~~ 120 (279)
T 2w2e_A 41 VRNHFIAMSGEFVGTFLFLWSAFVIAQIANQAPETPDGGSNPAQLIMISFGFGFGVMVGVFITYRVSGGNLNPAVTLALV 120 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCGGGCCCHHHHHHHHHHHHHHHHHHHHHHTTTTCCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCccHHHHHHHHHHHHHHHHHHHhhcCccccChHHHHHHH
Confidence 346789999999999999999988632 2211 111122345778999999999999999999999999999999999
Q ss_pred HhccCcchhHHHHHHHHhHHHHHHHHHHHHhhchhhhhcCCCcccccCCCccchhHHHHHHHHHHHHHHHHHhcCCCCCC
Q 024444 112 LARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSA 191 (267)
Q Consensus 112 l~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~T~~l~~~il~~~~~~~~~ 191 (267)
+.|+++|++++.|+++|++|+++|+.+++.++++... ..+.+.++.+..++|+.|+++||+|+++++.+.++++..
T Consensus 121 ~~g~~~~~~~~~YiiAQ~lGA~~ga~lv~~~~~~~~~----~~t~~~~~~s~~~~~~~E~i~Tf~Lv~~Il~~~~~~~~~ 196 (279)
T 2w2e_A 121 LARAIPPFRGILMAFTQIVAGMAAAGAASAMTPGEIA----FANALGGGASRTRGLFLEAFGTAILCLTVLMLAVEKHRA 196 (279)
T ss_dssp HTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCC----CSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHTTSCSTT
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHccccce----eeccCCccccHHHHHHHHHHHHHHHHHHHHHHccCCCCC
Confidence 9999999999999999999999999999999976531 233455567889999999999999999999987765532
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhhCCCcCccchhhhHHHHHhcCCCCCCCcceEEeechhHHHHHHHHHHHHhh
Q 024444 192 RDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHVRKKLCISEFCVCLLCFYDILN 266 (267)
Q Consensus 192 ~~~~~~~l~~~~igl~v~~~~~~~~~~tG~~~NPAr~lg~~i~~~~~~~~~~~wVy~v~P~~Ga~~a~~ly~~~~ 266 (267)
+.+.|+.||+++.+++++.+++||++||||||||||++.+ ..|+|+||||++|++|+++|+++|+++.
T Consensus 197 -----~~~~pl~IGl~v~~~~l~~g~~TG~s~NPAR~~GPal~~~--~~~~~~WVy~vgPiiGa~la~~ly~~l~ 264 (279)
T 2w2e_A 197 -----TWFAPFVIGIALLIAHLICIYYTGAGLNPARSFGPAVAAR--SFPNYHWIYWLGPILGAFLAYSIWQMWK 264 (279)
T ss_dssp -----GGGHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHHHT--CCCTTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----cCcHHHHHHHHHHHHHHhcccccccccChHHHHHHHHHhc--cchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3589999999999999999999999999999999999975 2457899999999999999999999874
No 10
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A*
Probab=100.00 E-value=8.4e-53 Score=363.74 Aligned_cols=220 Identities=28% Similarity=0.417 Sum_probs=187.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHHHhccCCCccChHHHHHHHHhccCcc
Q 024444 39 FYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSL 118 (267)
Q Consensus 39 ~~~~~~~EflgT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g~~~~ 118 (267)
++|++++||+||++|+|++++++...+..+ +.+.+.+.+++++|+++++.+|+++++||||+|||||+++++.|+++|
T Consensus 4 l~r~~~aEf~GT~~lv~~g~g~~~~~~~~~--~~~~~~l~ia~~~Gl~v~~~i~~~g~iSGaHlNPAVTla~~~~g~~~~ 81 (234)
T 2o9g_A 4 MFRKLAAESFGTFWLVFGGSGSAVLAAGFP--ELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPA 81 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTCT--TTCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHTTSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccCCC--CCCcChHHHHHHHHHHHHHHHHHhhccCcceeCHHHHHHHHHhCCCCH
Confidence 579999999999999999998875433221 234567889999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHhhchh--hhhc-----CCCc-ccccCCCccchhHHHHHHHHHHHHHHHHHhcCCCCC
Q 024444 119 IRAVAYMVAQCLGAICGVGLVKAFMKHE--YNSL-----GGGA-NTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRS 190 (267)
Q Consensus 119 ~~~~~yi~aQ~lGa~~ga~~~~~~~~~~--~~~~-----~~~~-~~~~~~~~~~~~~~~E~~~T~~l~~~il~~~~~~~~ 190 (267)
++.+.|+++|++|+++|+.+++.++++. ++.. ..+. .+.+.+.+..++|+.|+++|++|+++++.+.|+|+.
T Consensus 82 ~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~t~p~~~~~~~~~~~E~i~T~~Lv~~i~~~~d~~~~ 161 (234)
T 2o9g_A 82 KEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAP 161 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHCTTCCCCGGGSTTCCCHHHHHHHHHHHHHHHHHHHHHHTSTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccceeeecCCCccchHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 9999999999999999999999998743 2210 1111 112235688899999999999999999999885432
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHhhCCCcCccchhhhHHHHHhcCCCCCCCcceEEeechhHHHHHHHHHHHHhhC
Q 024444 191 ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHVRKKLCISEFCVCLLCFYDILNK 267 (267)
Q Consensus 191 ~~~~~~~~l~~~~igl~v~~~~~~~~~~tG~~~NPAr~lg~~i~~~~~~~~~~~wVy~v~P~~Ga~~a~~ly~~~~~ 267 (267)
+.+.|+.||+++.+++++.+++||++||||||||||++.+ +.+|+|+||||++|++|+++++++||++.+
T Consensus 162 ------~~~~pl~IGl~v~~~~~~~g~~TG~s~NPAR~lGPal~~g-~~~~~~~Wv~~vgP~~Ga~la~~~y~~~~~ 231 (234)
T 2o9g_A 162 ------AGFAPIAIGLACTLIHLISIPVTNTSVNPARSTAVAIFQG-GWALEQLWFFWVVPIVGGIIGGLIYRTLLE 231 (234)
T ss_dssp ------TTCHHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHC-SHHHHSHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred ------cchHHHHHHHHHHHHHHHccCCCccccChHHHHHHHHHhC-CCCCceeeeeehHHhHHHHHHHHHHHHHcC
Confidence 3589999999999999999999999999999999999985 345779999999999999999999998753
No 11
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A*
Probab=100.00 E-value=2.5e-52 Score=369.91 Aligned_cols=224 Identities=27% Similarity=0.352 Sum_probs=189.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHHHhccCCCccChHHHHHHHHhccC
Q 024444 37 WSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV 116 (267)
Q Consensus 37 ~~~~~~~~~EflgT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g~~ 116 (267)
++++|++++||+||++|+|++++++......+ .+.+.+.+++++|+++++.+|+++++||||+|||||+++++.|++
T Consensus 5 ~~~~~~~laEflGT~~Lv~~G~g~~~~~~l~~---~~~g~~~ia~~~Glav~~~i~~~g~iSGaHlNPAVTla~~~~g~~ 81 (281)
T 1ldf_A 5 STLKGQCIAEFLGTGLLIFFGVGCVAALKVAG---ASFGQWEISVIFGLGVAMAIYLTAGVSGAHLNPAVTIALWLFACF 81 (281)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC---CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC---CCCchHHHHHHHHHHHHHHhheecccCcCeeChHHHHHHHHcCCC
Confidence 35789999999999999999998876543332 123455689999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHhHHHHHHHHHHHHhhchhhhhcC-----------------CCcccccCCCccchhHHHHHHHHHHHHH
Q 024444 117 SLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLG-----------------GGANTVASGYNKGSALGAEIIGTFVLVY 179 (267)
Q Consensus 117 ~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~E~~~T~~l~~ 179 (267)
+|++++.|+++|++|+++|+.+++.++++.++..+ ...+.+.++.+..++|+.|+++||+|++
T Consensus 82 ~~~~~~~Yi~AQ~lGA~~ga~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~f~t~p~~~~s~~~~~~~E~i~Tf~Lv~ 161 (281)
T 1ldf_A 82 DKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMG 161 (281)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTSGGGHHHHTTTSCCCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccceeeccCCccccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999986543211 1123344567889999999999999999
Q ss_pred HHHHhcCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhCCCcCccchhhhHHHHHhcC----C------CCCCCcceEEee
Q 024444 180 TVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYN----N------DKAWDDHVRKKL 249 (267)
Q Consensus 180 ~il~~~~~~~~~~~~~~~~l~~~~igl~v~~~~~~~~~~tG~~~NPAr~lg~~i~~~----~------~~~~~~~wVy~v 249 (267)
+++.+.|+|+.... +.+.|+.||+++.+++++.+++||++||||||||||++.. + ..+|.|+||||+
T Consensus 162 ~il~~~d~~~~~~~---~~~~pl~IGl~v~~~~~~~g~~TG~a~NPAR~~GPal~~~~~g~g~~~~~~~~~~~~~WVy~v 238 (281)
T 1ldf_A 162 LILALTDDGNGVPR---GPLAPLLIGLLIAVIGASMGPLTGTAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPLF 238 (281)
T ss_dssp HHHHHHCTTSSSCC---GGGHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHTTTTTHHHHTTCSSCTTHHHHH
T ss_pred HHHHHhccCCCCcc---cchHHHHHHHHHHHHHHhcccccccccCcHhhHHHHHHHHhcccccccccccCCCceeeHHhH
Confidence 99999887765321 3589999999999999999999999999999999999861 1 123338999999
Q ss_pred chhHHHHHHHHHHHHhh
Q 024444 250 CISEFCVCLLCFYDILN 266 (267)
Q Consensus 250 ~P~~Ga~~a~~ly~~~~ 266 (267)
+|++|+++++++||++.
T Consensus 239 gPi~Ga~la~~~y~~l~ 255 (281)
T 1ldf_A 239 GPIVGAIVGAFAYRKLI 255 (281)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999999874
No 12
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A*
Probab=100.00 E-value=3.1e-51 Score=356.73 Aligned_cols=225 Identities=28% Similarity=0.365 Sum_probs=189.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccc-cCCC--------CC-----CCcchHHHHHHHHHHHHHHHHHHhccCCCccC
Q 024444 38 SFYRALIAEFVATLLFLYVSVATVIGHK-KQSD--------AC-----GGVGLLGIAWAFGGMIFVLVYCTAGISGGHIN 103 (267)
Q Consensus 38 ~~~~~~~~EflgT~~lv~~~~~~~~~~~-~~~~--------~~-----~~~~~~~~~l~~g~~v~~~i~~~~~iSGah~N 103 (267)
+++|++++||+||++|+|++++++.... ..++ .. ...+++.+++++|+++++.+|+++++||||+|
T Consensus 3 ~~~~~~~aEfiGT~~lv~~g~g~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~ia~~~Gl~v~~~v~~~g~iSGaH~N 82 (246)
T 2f2b_A 3 SLTKRCIAEFIGTFILVFFGAGSAAVTLMIASGGTSPNPFNIGIGLLGGLGDWVAIGLAFGFAIAASIYALGNISGCHIN 82 (246)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSTTCCSTTTTTTHHHHHHHHHHHHHHHHHHHHHHTTTTCCCCS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccccccccccccccchhHHHHHHHHHHHHHhheecccccceeC
Confidence 3679999999999999999998766532 1110 01 12235669999999999999999999999999
Q ss_pred hHHHHHHHHhccCcchhHHHHHHHHhHHHHHHHHHHHHhhchhhh-hcCCCcccccCCCccchhHHHHHHHHHHHHHHHH
Q 024444 104 PAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYN-SLGGGANTVASGYNKGSALGAEIIGTFVLVYTVF 182 (267)
Q Consensus 104 PavTla~~l~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~E~~~T~~l~~~il 182 (267)
||||+++++.|+++|++.+.|+++|++|+++|+.+++.+++++.. ....+.+.+.++.+..++++.|+++|++|+++++
T Consensus 83 PAVTla~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~~~~~~~~~~~t~p~~~~~~~~~~~~E~i~Tf~Lv~~i~ 162 (246)
T 2f2b_A 83 PAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGSFIFLQCAGIGAATVGGLGATAPFPGISYWQAMLAEVVGTFLLMITIM 162 (246)
T ss_dssp HHHHHHHHHTTSSCGGGHHHHHHHHHHHHHHHHHHHHHHHCTHHHHTTGGGCCCCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhcceeeeccCccccchHHHHHHHHHHHHHHHheee
Confidence 999999999999999999999999999999999999999986321 2222334455678889999999999999999999
Q ss_pred HhcCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhCCCcCccchhhhHHHHH--hc-CCCCCCCcceEEeechhHHHHHHH
Q 024444 183 SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAV--IY-NNDKAWDDHVRKKLCISEFCVCLL 259 (267)
Q Consensus 183 ~~~~~~~~~~~~~~~~l~~~~igl~v~~~~~~~~~~tG~~~NPAr~lg~~i--~~-~~~~~~~~~wVy~v~P~~Ga~~a~ 259 (267)
...++++.. +.+.|+.+|+++.+++++.+++||+++|||||||||+ .. +++.+|+|+||||++|++|+++++
T Consensus 163 ~~~~~~~~~-----~~~~pl~iGl~v~~~~~~~g~~TG~~iNPAr~lgp~l~~~~~g~~~~w~~~~vy~vap~~Ga~laa 237 (246)
T 2f2b_A 163 GIAVDERAP-----KGFAGIIIGLTVAGIITTLGNISGSSLNPARTFGPYLNDMIFAGTDLWNYYSIYVIGPIVGAVLAA 237 (246)
T ss_dssp HHTTSTTSC-----TTCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCGGGTTHHHHHHHHHHHHHH
T ss_pred EEecCCCCC-----CceeeHHHHHHHHHHHhcccccCCCccCHHHHHHHHHHHHHcCCCCCcceEEEeeeHHHHHHHHHH
Confidence 876655432 3478999999999999999999999999999999999 43 446789999999999999999999
Q ss_pred HHHHHhhC
Q 024444 260 CFYDILNK 267 (267)
Q Consensus 260 ~ly~~~~~ 267 (267)
++||++.+
T Consensus 238 ~~y~~l~~ 245 (246)
T 2f2b_A 238 LTYQYLTS 245 (246)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHcC
Confidence 99998854
No 13
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum}
Probab=100.00 E-value=6.3e-52 Score=363.14 Aligned_cols=224 Identities=20% Similarity=0.275 Sum_probs=187.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHHHhccCCCccChHHHHHHHHhccC
Q 024444 37 WSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKV 116 (267)
Q Consensus 37 ~~~~~~~~~EflgT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g~~ 116 (267)
++++|++++||+||++|+|++++++.+....+ ...+.+.+++++|+++++.+|+++++||||+|||||+++++.|++
T Consensus 7 ~~~~~~~~aEflGT~~lv~~G~g~~~~~~~~~---~~~~~l~ia~~~Glav~~~i~~~g~iSGaHlNPAVTla~~~~g~~ 83 (258)
T 3c02_A 7 KSYVREFIGEFLGTFVLMFLGEGATANFHTTG---LSGDWYKLCLGWGLAVFFGILVSAKLSGAHLNLAVSIGLSSINKF 83 (258)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---STTCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC---CCccHHHHHHHHHHHHHHHHheecccCcCeeChHHHHHHHHhCCC
Confidence 45789999999999999999998766433221 134677899999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHhHHHHHHHHHHHHhhchhhhhcCCC----cccccCCCccchhHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 024444 117 SLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGG----ANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSAR 192 (267)
Q Consensus 117 ~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~E~~~T~~l~~~il~~~~~~~~~~ 192 (267)
+|++++.|+++|++|+++|+.+++.++++.++..+.. ......+.+..++++.|+++||+|+++++.+.|+|++..
T Consensus 84 ~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~t~p~~~~~~~E~i~Tf~Lv~~i~~~~d~~~~~~ 163 (258)
T 3c02_A 84 DLKKIPVYFFAQLLGAFVGTSTVYGLYHGFISNSKIPQFAWETSRNPSISLTGAFFNELILTGILLLVILVVVDENICGK 163 (258)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHHTHHHHHTTCSCTTCSSCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHHCHHHHCS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhccccccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHhCcccCCc
Confidence 9999999999999999999999999998766543211 111223344456999999999999999999988765321
Q ss_pred CCCCCCch-hHHHHHHHHHHHHHhhCCCcCccchhhhHHHHHhcC---CCCCC----CcceEEeechhHHHHHHHHHHHH
Q 024444 193 DSHVPVLA-PLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYN---NDKAW----DDHVRKKLCISEFCVCLLCFYDI 264 (267)
Q Consensus 193 ~~~~~~l~-~~~igl~v~~~~~~~~~~tG~~~NPAr~lg~~i~~~---~~~~~----~~~wVy~v~P~~Ga~~a~~ly~~ 264 (267)
. +.+. |+.||+++.+++++.+++||++||||||||||++.+ ++..| +|+||||++|++|+++++++||+
T Consensus 164 ~---~~~~~pl~IGl~v~~~~~~~g~~TG~a~NPAR~~GPal~~~~~~g~~~~~~~~~y~Wv~~vgP~~Ga~la~~~y~~ 240 (258)
T 3c02_A 164 F---HILKLSSVVGLIILCIGITFGGNTGFALNPSRDLGSRFLSLIAYGKDTFTKDNFYFWVPLVAPCVGSVVFCQFYDK 240 (258)
T ss_dssp C---CHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred c---cccHHHHHHHHHHHHHHHhccCccCCCcChHHHHHHHHHHhccccccccccCCceeehHHHHHHHHHHHHHHHHHH
Confidence 1 3578 999999999999999999999999999999999972 22344 67999999999999999999998
Q ss_pred hh
Q 024444 265 LN 266 (267)
Q Consensus 265 ~~ 266 (267)
+.
T Consensus 241 ~~ 242 (258)
T 3c02_A 241 VI 242 (258)
T ss_dssp TH
T ss_pred Hh
Confidence 74
No 14
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A*
Probab=99.60 E-value=3e-15 Score=129.77 Aligned_cols=99 Identities=22% Similarity=0.318 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHHHhccCCCccChHHHHHHHH-----
Q 024444 38 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFL----- 112 (267)
Q Consensus 38 ~~~~~~~~EflgT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v~~~i~~~~~iSGah~NPavTla~~l----- 112 (267)
+.+|.++.|+++|++|++.+++.....+.. ....++.+|+.++...+..+++||+|+|||+|+++.+
T Consensus 142 ~~~~~~~~E~i~Tf~Lv~~i~~~~~~~~~~--------~~~~pl~iGl~v~~~~~~~g~~TG~~iNPAr~lgp~l~~~~~ 213 (246)
T 2f2b_A 142 SYWQAMLAEVVGTFLLMITIMGIAVDERAP--------KGFAGIIIGLTVAGIITTLGNISGSSLNPARTFGPYLNDMIF 213 (246)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTSTTSC--------TTCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHheeeEEecCCCCC--------CceeeHHHHHHHHHHHhcccccCCCccCHHHHHHHHHHHHHc
Confidence 457899999999999999988765432211 1136788999999999999999999999999999998
Q ss_pred hccCcchhHHHHHHHHhHHHHHHHHHHHHhhc
Q 024444 113 ARKVSLIRAVAYMVAQCLGAICGVGLVKAFMK 144 (267)
Q Consensus 113 ~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~ 144 (267)
.++..|.+.|+||++|++|+++|+++.+.+.+
T Consensus 214 g~~~~w~~~~vy~vap~~Ga~laa~~y~~l~~ 245 (246)
T 2f2b_A 214 AGTDLWNYYSIYVIGPIVGAVLAALTYQYLTS 245 (246)
T ss_dssp HCCCCGGGTTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCcceEEEeeeHHHHHHHHHHHHHHHHcC
Confidence 34567889999999999999999999887754
No 15
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A*
Probab=99.35 E-value=4.3e-12 Score=111.59 Aligned_cols=102 Identities=18% Similarity=0.210 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHHHhccCCCccChHHHHHHHHhccCc
Q 024444 38 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVS 117 (267)
Q Consensus 38 ~~~~~~~~EflgT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g~~~ 117 (267)
+..+.++.|+++||+|++..++.....+.. ....++.+|+.++...+..++.||+.+|||++++..+....-
T Consensus 167 s~~~~~~~E~i~Tf~Lv~~Il~~~~~~~~~--------~~~~pl~IGl~v~~~~l~~g~~TG~s~NPAR~~GPal~~~~~ 238 (279)
T 2w2e_A 167 SRTRGLFLEAFGTAILCLTVLMLAVEKHRA--------TWFAPFVIGIALLIAHLICIYYTGAGLNPARSFGPAVAARSF 238 (279)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTSCSTT--------GGGHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHHHTCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHccCCCCC--------cCcHHHHHHHHHHHHHHhcccccccccChHHHHHHHHHhccc
Confidence 456889999999999999888764322211 113577889999999999999999999999999999987644
Q ss_pred chhHHHHHHHHhHHHHHHHHHHHHhhchhh
Q 024444 118 LIRAVAYMVAQCLGAICGVGLVKAFMKHEY 147 (267)
Q Consensus 118 ~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~ 147 (267)
+...|+||++|++|+++|+++.+.+...++
T Consensus 239 ~~~~WVy~vgPiiGa~la~~ly~~l~~~~~ 268 (279)
T 2w2e_A 239 PNYHWIYWLGPILGAFLAYSIWQMWKWLNY 268 (279)
T ss_dssp CTTTTHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 567999999999999999999888775443
No 16
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A*
Probab=99.35 E-value=2.8e-12 Score=110.27 Aligned_cols=99 Identities=19% Similarity=0.218 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHHHhccCCCccChHHHHHHHHhc-cC
Q 024444 38 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLAR-KV 116 (267)
Q Consensus 38 ~~~~~~~~EflgT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g-~~ 116 (267)
+..+.++.|+++|++|++..++.... +.. .. ..++.+|+.+....+..++.||+.+|||+++++.+.. ..
T Consensus 133 ~~~~~~~~E~i~T~~Lv~~i~~~~d~-~~~----~~----~~pl~IGl~v~~~~~~~g~~TG~s~NPAR~lGPal~~g~~ 203 (234)
T 2o9g_A 133 SMLSALVVELVLSAGFLLVIHGATDK-FAP----AG----FAPIAIGLACTLIHLISIPVTNTSVNPARSTAVAIFQGGW 203 (234)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTST-TSC----TT----CHHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHCSH
T ss_pred chHHHHHHHHHHHHHHHHHHHHhcCC-CCc----cc----hHHHHHHHHHHHHHHHccCCCccccChHHHHHHHHHhCCC
Confidence 46789999999999999988775431 111 11 3578889999999999999999999999999999874 44
Q ss_pred cchhHHHHHHHHhHHHHHHHHHHHHhhch
Q 024444 117 SLIRAVAYMVAQCLGAICGVGLVKAFMKH 145 (267)
Q Consensus 117 ~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~ 145 (267)
.|.+.|+||++|++|+++|+++.+.++.+
T Consensus 204 ~~~~~Wv~~vgP~~Ga~la~~~y~~~~~~ 232 (234)
T 2o9g_A 204 ALEQLWFFWVVPIVGGIIGGLIYRTLLEK 232 (234)
T ss_dssp HHHSHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred CCceeeeeehHHhHHHHHHHHHHHHHcCC
Confidence 57799999999999999999998887653
No 17
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=99.34 E-value=2.3e-12 Score=111.87 Aligned_cols=98 Identities=23% Similarity=0.313 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHHHhccCCCccChHHHHHHHHh-cc
Q 024444 37 WSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLA-RK 115 (267)
Q Consensus 37 ~~~~~~~~~EflgT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v~~~i~~~~~iSGah~NPavTla~~l~-g~ 115 (267)
.+..+.++.|+++||+|++..++..... .. .. ..++.+|+.+....+..++.||+.+|||+++++.+. |.
T Consensus 155 ~s~~~~f~~E~i~Tf~Lv~~il~~~d~~-~~----~~----~~pl~IGl~v~~i~~~~g~~TG~a~NPAR~lGPal~~g~ 225 (256)
T 3llq_A 155 YSLVSALLIEIILTAFFLIVILGSTHGR-VP----AG----FAPIAIGLALTLIHLISIPVTNTSVNPARSTGQALFVGG 225 (256)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHSTT-SC----TT----CHHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHCH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhcCCC-CC----cc----chhHHHHHHHHHHHHHhccccccccChHHHHHHHHHcCC
Confidence 3567899999999999999877654321 11 11 356788888888989999999999999999999986 44
Q ss_pred CcchhHHHHHHHHhHHHHHHHHHHHHhh
Q 024444 116 VSLIRAVAYMVAQCLGAICGVGLVKAFM 143 (267)
Q Consensus 116 ~~~~~~~~yi~aQ~lGa~~ga~~~~~~~ 143 (267)
..|...|+||++|++|+++|+++.+.+.
T Consensus 226 ~~~~~~WVy~vgPi~Ga~la~~~y~~l~ 253 (256)
T 3llq_A 226 WALQQLWLFWLAPIVGGAAGAVIWKLFG 253 (256)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcccceeeeeeHHHHHHHHHHHHHHHhc
Confidence 4577899999999999999999988764
No 18
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A*
Probab=99.34 E-value=4e-12 Score=111.01 Aligned_cols=100 Identities=24% Similarity=0.233 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHHHhccCCCccChHHHHHHHHhccCc
Q 024444 38 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVS 117 (267)
Q Consensus 38 ~~~~~~~~EflgT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g~~~ 117 (267)
+..+.++.|+++||+|++..++.....+... .. ..++.+|+.+.......++.||+.+|||+++++.+... .
T Consensus 126 s~~~~~~~E~i~Tf~Lv~~il~~~d~~~~~~---~~----~~pl~IGl~v~~~~~~~g~~TG~a~NPAR~~GPal~~~-~ 197 (263)
T 2b6o_A 126 SVGQATIVEIFLTLQFVLCIFATYDERRNGR---LG----SVALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTR-N 197 (263)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSCTTSCSS---CC----CHHHHHHHHHHHHHHHHTTTSTTCCCHHHHHHHHHHHT-C
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcccCCCC---cc----cHHHHHHHHHHHHHHhccCCCcccccHHHHHHHHHHcC-C
Confidence 3568999999999999999887632211110 11 25677888888888999999999999999999999876 7
Q ss_pred chhHHHHHHHHhHHHHHHHHHHHHhhch
Q 024444 118 LIRAVAYMVAQCLGAICGVGLVKAFMKH 145 (267)
Q Consensus 118 ~~~~~~yi~aQ~lGa~~ga~~~~~~~~~ 145 (267)
|...|+||++|++|+++|+++.+.+..+
T Consensus 198 ~~~~Wvy~vgP~~Ga~la~~~y~~l~~~ 225 (263)
T 2b6o_A 198 FTNHWVYWVGPVIGAGLGSLLYDFLLFP 225 (263)
T ss_dssp CTTCTHHHHHHHHHHHHHHHHHHTTTSC
T ss_pred ccceeHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999998887653
No 19
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens}
Probab=99.32 E-value=6.4e-12 Score=109.83 Aligned_cols=100 Identities=17% Similarity=0.190 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHHHhccCCCccChHHHHHHHHhccCc
Q 024444 38 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVS 117 (267)
Q Consensus 38 ~~~~~~~~EflgT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g~~~ 117 (267)
+..+.++.|+++||+|++..++.....+... .. ..++.+|+.+.+.....++.||+.+|||+++++.+... .
T Consensus 128 s~~~~~~~E~i~Tf~Lv~~il~~~d~~~~~~---~~----~~pl~IGl~v~~~~~~~g~~TG~a~NPAR~~GPal~~~-~ 199 (266)
T 3d9s_A 128 TQGQAMVVELILTFQLALCIFASTDSRRTSP---VG----SPALSIGLSVTLGHLVGIYFTGCSMNPARSFGPAVVMN-R 199 (266)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHCTTCCSC---CC----CHHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHT-C
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcccCCCc---cc----hHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHcC-C
Confidence 4568899999999999999887643222110 11 25677888888888888899999999999999999765 7
Q ss_pred chh-HHHHHHHHhHHHHHHHHHHHHhhch
Q 024444 118 LIR-AVAYMVAQCLGAICGVGLVKAFMKH 145 (267)
Q Consensus 118 ~~~-~~~yi~aQ~lGa~~ga~~~~~~~~~ 145 (267)
|.+ .|+||++|++|+++|+++.+.+..+
T Consensus 200 ~~~~~Wvy~vgP~~Ga~la~~~y~~l~~~ 228 (266)
T 3d9s_A 200 FSPAHWVFWVGPIVGAVLAAILYFYLLFP 228 (266)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred cccCEeeeehHHHHHHHHHHHHHHHHhCC
Confidence 888 9999999999999999998887654
No 20
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens}
Probab=99.30 E-value=9.8e-12 Score=106.07 Aligned_cols=98 Identities=21% Similarity=0.312 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHHHhccCCCccChHHHHHHHHhccCc
Q 024444 38 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVS 117 (267)
Q Consensus 38 ~~~~~~~~EflgT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g~~~ 117 (267)
+..+.++.|+++||+|++..+......+... .+ ..++.+|+.+.+.....++.||+.+|||+++++.+... .
T Consensus 124 s~~~~~~~E~i~Tf~Lv~~i~~~~~~~~~~~---~~----~~pl~iGl~v~~~~~~g~~~TG~a~NPAR~~GP~l~~~-~ 195 (223)
T 3gd8_A 124 TAGHGLLVELIITFQLVFTIFASCDSKRTDV---TG----SIALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMG-N 195 (223)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCTTCSCC---CS----CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHT-C
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhccccCCc---cC----CccHHHHHHHHHHHHhccCCccccccHHHHHHHHHHhc-C
Confidence 3568899999999999998877543222110 11 24577777776666667789999999999999999865 7
Q ss_pred chhHHHHHHHHhHHHHHHHHHHHHhh
Q 024444 118 LIRAVAYMVAQCLGAICGVGLVKAFM 143 (267)
Q Consensus 118 ~~~~~~yi~aQ~lGa~~ga~~~~~~~ 143 (267)
|.+.|+||+++++|+++++++.+.++
T Consensus 196 w~~~Wvy~vgP~~Ga~la~~~y~~~~ 221 (223)
T 3gd8_A 196 WENHWIYWVGPIIGAVLAGGLYEYVF 221 (223)
T ss_dssp CTTTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCcEEeehhHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999987765
No 21
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=99.29 E-value=9.2e-12 Score=111.54 Aligned_cols=99 Identities=19% Similarity=0.275 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHHHhccCCCccChHHHHHHHHhccCc
Q 024444 38 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVS 117 (267)
Q Consensus 38 ~~~~~~~~EflgT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g~~~ 117 (267)
+..+.++.|+++||+|++..++.....+... . + ..++.+|+.+.+.....++.||+.+|||+++++.+... .
T Consensus 172 s~~~~f~~E~i~Tf~Lv~~Ila~~d~~~~~~---~--~--~~pl~IGl~v~i~~~~g~~~TG~amNPARdlGPal~~~-~ 243 (340)
T 3iyz_A 172 TAGHGLLVELIITFQLVFTIFASCDDKRTDV---T--G--SVALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMG-N 243 (340)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhcCccCCc---c--c--chhhHHHHHHHHHHHhccCCccccccHHHHHHHHHHcc-C
Confidence 4578999999999999998877543222110 0 1 24677888777777777789999999999999999865 6
Q ss_pred chhHHHHHHHHhHHHHHHHHHHHHhhc
Q 024444 118 LIRAVAYMVAQCLGAICGVGLVKAFMK 144 (267)
Q Consensus 118 ~~~~~~yi~aQ~lGa~~ga~~~~~~~~ 144 (267)
|...|+||+++++|+++|+++...++.
T Consensus 244 w~~~WVywvgPiiGailaallY~~l~~ 270 (340)
T 3iyz_A 244 WENHWIYWVGPIIGAVLAGALYEYVFC 270 (340)
T ss_pred CCcEeehhHHHHHHHHHHHHHHHHHhC
Confidence 899999999999999999999988774
No 22
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A
Probab=99.29 E-value=9.8e-12 Score=110.22 Aligned_cols=99 Identities=19% Similarity=0.275 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHHHhccCCCccChHHHHHHHHhccCc
Q 024444 38 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVS 117 (267)
Q Consensus 38 ~~~~~~~~EflgT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g~~~ 117 (267)
+..+.++.|+++||+|++..++.....+... .+ ..++.+|+.+.+.....++.||+.+|||+++++.+... .
T Consensus 133 s~~~~f~~E~i~Tf~Lv~~Il~~~d~~~~~~---~~----~~pl~IGl~v~i~~~~g~~~TG~a~NPAR~~GPal~~~-~ 204 (301)
T 2zz9_A 133 TAGHGLLVELIITFQLVFTIFASCDDKRTDV---TG----SVALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMG-N 204 (301)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSCSSSSCC---SS----CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC-C
T ss_pred chHHHHHHHHHHHHHHHHHHHHhcCCCCCCc---cc----hHhHHHHHHHHHHHHHhcCCcccccCcHHHHHHHHHhC-C
Confidence 4578999999999999999887543221110 11 24677888887777777789999999999999999865 7
Q ss_pred chhHHHHHHHHhHHHHHHHHHHHHhhc
Q 024444 118 LIRAVAYMVAQCLGAICGVGLVKAFMK 144 (267)
Q Consensus 118 ~~~~~~yi~aQ~lGa~~ga~~~~~~~~ 144 (267)
|...|+||++|++|+++|+++.+.++.
T Consensus 205 w~~~WVy~vgPiiGailaa~ly~~l~~ 231 (301)
T 2zz9_A 205 WENHWIYWVGPIIGAVLAGALYEYVFC 231 (301)
T ss_dssp CTTTTHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CcceeeeeeHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999888765
No 23
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A
Probab=99.26 E-value=6.3e-12 Score=111.63 Aligned_cols=105 Identities=19% Similarity=0.240 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHHHhccCCCccChHHHHHHHHh--cc
Q 024444 38 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLA--RK 115 (267)
Q Consensus 38 ~~~~~~~~EflgT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v~~~i~~~~~iSGah~NPavTla~~l~--g~ 115 (267)
+..+.++.|+++||+|++.++......+... ........++.+|+.++...+..++.||+.+|||++++..+. +.
T Consensus 183 s~~~~f~~E~i~TfiLv~~Il~~~d~~~~~~---~~~~~~lapl~IGl~V~~~~l~~g~~TG~amNPAR~~GPal~~~~~ 259 (304)
T 3cn5_A 183 NKGTALGAEIIGTFVLVYTVFSATDPKRSAR---DSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSN 259 (304)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTEEEEEEST---TSCCEEECHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHCCH
T ss_pred cHHHHHHHHHHHHHHHHHHHhheecCccCCC---CcccccchHHHHHHHHHHHHHhccCCCccccChHHHHHHHHHHccC
Confidence 4578999999999999998885432221111 000001246778888999999999999999999999999987 23
Q ss_pred CcchhHHHHHHHHhHHHHHHHHHHHHhhch
Q 024444 116 VSLIRAVAYMVAQCLGAICGVGLVKAFMKH 145 (267)
Q Consensus 116 ~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~ 145 (267)
..|.+.|+||++|++|+++|+++.+.++.+
T Consensus 260 ~~w~~~WvywvgPiiGa~laa~~y~~l~~~ 289 (304)
T 3cn5_A 260 KVWDDQWIFWVGPFIGAAVAAAYHQYVLRA 289 (304)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCcCceEEEeehHHHHHHHHHHHHHHHhCC
Confidence 479999999999999999999998887653
No 24
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A*
Probab=99.24 E-value=2.6e-11 Score=106.88 Aligned_cols=103 Identities=19% Similarity=0.221 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHHHhccCCCccChHHHHHHHHhc---
Q 024444 38 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLAR--- 114 (267)
Q Consensus 38 ~~~~~~~~EflgT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g--- 114 (267)
+..+.++.|+++||+|++..++.....+... ..-..++.+|+.++...+..++.||+.+|||+++++.+..
T Consensus 144 s~~~~~~~E~i~Tf~Lv~~il~~~d~~~~~~------~~~~~pl~IGl~v~~~~~~~g~~TG~a~NPAR~~GPal~~~~~ 217 (281)
T 1ldf_A 144 NFVQAFAVEMVITAILMGLILALTDDGNGVP------RGPLAPLLIGLLIAVIGASMGPLTGTAMNPARDFGPKVFAWLA 217 (281)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHCTTSSSC------CGGGHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhccCCCCc------ccchHHHHHHHHHHHHHHhcccccccccCcHhhHHHHHHHHhc
Confidence 4678999999999999999887643221110 0113678889999999999999999999999999998763
Q ss_pred ---cCcch------hHHHHHHHHhHHHHHHHHHHHHhhchh
Q 024444 115 ---KVSLI------RAVAYMVAQCLGAICGVGLVKAFMKHE 146 (267)
Q Consensus 115 ---~~~~~------~~~~yi~aQ~lGa~~ga~~~~~~~~~~ 146 (267)
...|. ..|+||++|++|+++|+++.+.+..++
T Consensus 218 g~g~~~~~~~~~~~~~WVy~vgPi~Ga~la~~~y~~l~~~~ 258 (281)
T 1ldf_A 218 GWGNVAFTGGRDIPYFLVPLFGPIVGAIVGAFAYRKLIGRH 258 (281)
T ss_dssp TTTTHHHHTTCSSCTTHHHHHHHHHHHHHHHHHHHHHTGGG
T ss_pred ccccccccccCCCceeeHHhHHHHHHHHHHHHHHHHHhCcc
Confidence 22333 689999999999999999998887643
No 25
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A
Probab=99.23 E-value=2.1e-11 Score=106.85 Aligned_cols=98 Identities=21% Similarity=0.247 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHHHhccCCCccChHHHHHHHHhccCcch
Q 024444 40 YRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLI 119 (267)
Q Consensus 40 ~~~~~~EflgT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g~~~~~ 119 (267)
.+.++.|+++|++|++..++.....+... .. ..++.+|+.+.+.....++.||+.+|||++++..+... .|.
T Consensus 138 ~~~~~~E~i~T~~Lv~~i~~~~d~~~~~~---~~----~~pl~IGl~v~~~~~~~~~~TG~a~NPAR~~Gpal~~~-~~~ 209 (271)
T 1j4n_A 138 GQGLGIEIIGTLQLVLCVLATTDRRRRDL---GG----SGPLAIGFSVALGHLLAIDYTGCGINPARSFGSSVITH-NFQ 209 (271)
T ss_dssp TGGGHHHHHHHHHHHHHHHHHTCSSCCCC---CS----CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHTT-CCT
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccCCCc---cc----cHHHHHHHHHHHHHHhccCCCccccChHHHHHHHHHhC-CCc
Confidence 46788999999999998876543211110 11 25677888887777777789999999999999998765 789
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHhhch
Q 024444 120 RAVAYMVAQCLGAICGVGLVKAFMKH 145 (267)
Q Consensus 120 ~~~~yi~aQ~lGa~~ga~~~~~~~~~ 145 (267)
..|+||++|++|+++|+++.+.+..+
T Consensus 210 ~~wv~~vgP~~Ga~la~~~y~~~~~~ 235 (271)
T 1j4n_A 210 DHWIFWVGPFIGAALAVLIYDFILAP 235 (271)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHTTTSC
T ss_pred ceeHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999998887653
No 26
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum}
Probab=99.22 E-value=3.9e-11 Score=104.50 Aligned_cols=103 Identities=17% Similarity=0.202 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCcchHHHHHHHHHHHHHHHHHHhccCCCccChHHHHHHHHhcc----
Q 024444 40 YRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARK---- 115 (267)
Q Consensus 40 ~~~~~~EflgT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g~---- 115 (267)
.+.++.|+++||+|++..++.....+... ...+..++.+|+.+....+..++.||+.+|||+++++.+...
T Consensus 135 ~~~~~~E~i~Tf~Lv~~i~~~~d~~~~~~-----~~~~~~pl~IGl~v~~~~~~~g~~TG~a~NPAR~~GPal~~~~~~g 209 (258)
T 3c02_A 135 TGAFFNELILTGILLLVILVVVDENICGK-----FHILKLSSVVGLIILCIGITFGGNTGFALNPSRDLGSRFLSLIAYG 209 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHHHCS-----CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcccCCc-----ccccHHHHHHHHHHHHHHHhccCccCCCcChHHHHHHHHHHhcccc
Confidence 45899999999999999887643221100 112222788999999999999999999999999999998642
Q ss_pred -Ccc----hhHHHHHHHHhHHHHHHHHHHHHhhchhh
Q 024444 116 -VSL----IRAVAYMVAQCLGAICGVGLVKAFMKHEY 147 (267)
Q Consensus 116 -~~~----~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~ 147 (267)
..| ...|+||++|++|+++|+++.+.+..++.
T Consensus 210 ~~~~~~~~~y~Wv~~vgP~~Ga~la~~~y~~~~~~~~ 246 (258)
T 3c02_A 210 KDTFTKDNFYFWVPLVAPCVGSVVFCQFYDKVICPLV 246 (258)
T ss_dssp THHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred ccccccCCceeehHHHHHHHHHHHHHHHHHHHhcccC
Confidence 245 34899999999999999999988876543
No 27
>3kcu_A Probable formate transporter 1; TCDB ID 2.A.44.1.1, channel, cell inner membrane, cell membrane, membrane, transmembrane; HET: MA5; 2.24A {Escherichia coli O157} PDB: 3kcv_A 3q7k_A
Probab=89.17 E-value=9.9 Score=32.83 Aligned_cols=109 Identities=14% Similarity=0.144 Sum_probs=61.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCccChHHHHHHHHhccCcchhHHHHHHHHhHHHHHHHHHHHHhhc--hhhhhcCCC
Q 024444 76 LLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMK--HEYNSLGGG 153 (267)
Q Consensus 76 ~~~~~l~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~--~~~~~~~~~ 153 (267)
.+..++.+++.+..+++.-+..--+ |--.++ ..+.||.+|++.+--|.-=.+|=++|++++-.+.. ..... ..+
T Consensus 68 ~ll~g~~F~vGL~lVvl~G~ELFTg--n~l~~~-a~~~~~is~~~~lr~W~~v~~gNliGal~~a~l~~~s~~~~~-~~~ 143 (285)
T 3kcu_A 68 KLVGGICFSLGLILCVVCGADLFTS--TVLIVV-AKASGRITWGQLAKNWLNVYFGNLVGALLFVLLMWLSGEYMT-ANG 143 (285)
T ss_dssp HHHHHHHHTHHHHHHHHHTCCCTTT--THHHHH-HHTTTCCCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHTGGGT-TTT
T ss_pred HHHHHHHHHHHHHHHHHhCcccccc--chHHHH-HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc-Cch
Confidence 3455666666666666665553222 322232 34578888887766655555555555555444321 11110 011
Q ss_pred --------cccccCCCccchhHHHHHHHHHHHHHHHHHhcCCC
Q 024444 154 --------ANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPK 188 (267)
Q Consensus 154 --------~~~~~~~~~~~~~~~~E~~~T~~l~~~il~~~~~~ 188 (267)
......+.+..+.|+-=.+|.++.++.++.....|
T Consensus 144 ~~~~~~~~ia~~K~~~~~~~~f~~GIlcN~lVclaVw~~~~ak 186 (285)
T 3kcu_A 144 QWGLNVLQTADHKVHHTFIEAVCLGILANLMVCLAVWMSYSGR 186 (285)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 00112345678899999999999999888755443
No 28
>3kly_A Putative formate transporter 1; membrane protein, channel, structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Vibrio cholerae} PDB: 3klz_A*
Probab=76.01 E-value=37 Score=29.09 Aligned_cols=108 Identities=14% Similarity=0.157 Sum_probs=64.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhcc-CCCccChHHHHHHHHhccCcchhHHHHHHHHhHHHHHHHHHHHHhhc--hhhhhcCC
Q 024444 76 LLGIAWAFGGMIFVLVYCTAGI-SGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMK--HEYNSLGG 152 (267)
Q Consensus 76 ~~~~~l~~g~~v~~~i~~~~~i-SGah~NPavTla~~l~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~--~~~~~~~~ 152 (267)
.+..++.+++.+..+++.-+.. +|-.+- ++ ..+.||.+|++.+--|.-=.+|=++|++++-.+.. .... ...
T Consensus 67 ~ll~g~~F~vGL~lVvl~g~ELFTgn~l~---~~-~~~~~~is~~~~lr~W~~v~~gNliGal~~a~l~~~s~~~~-~~~ 141 (280)
T 3kly_A 67 KLLGGLAFSLGLILVVITGGELFTSSVLI---LV-AKASGKISWKELVRNWTVVYFGNLCGSIILVFIMLATRQFM-EDG 141 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCTTTTCCC---CS-SSSSSSCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTGGG-TTT
T ss_pred HHHHHHHHHHHHHHHHHccccccccchHH---HH-HHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc-CCc
Confidence 3455666766666666665553 443332 22 24568889888877776666666666666554431 1111 011
Q ss_pred C--------cccccCCCccchhHHHHHHHHHHHHHHHHHhcCCC
Q 024444 153 G--------ANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPK 188 (267)
Q Consensus 153 ~--------~~~~~~~~~~~~~~~~E~~~T~~l~~~il~~~~~~ 188 (267)
+ ......+.+..+.|+-=.+|.++.++.++.....|
T Consensus 142 ~~~~~~~~~ia~~K~~~~~~~~f~~GIlcN~lVclaVw~~~~ak 185 (280)
T 3kly_A 142 GQLGLNAMAISQHKLHHTFLQAFALGLMCNILVCLAVWMTFSAR 185 (280)
T ss_dssp THHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 1 00112345678899999999999999888765433
No 29
>3tds_E Formate/nitrite transporter; membrane protein; HET: PG4 BOG; 1.98A {Clostridium difficile} PDB: 3tdo_A* 3tdr_A* 3te0_A* 3tdx_A* 3te2_A* 3te1_A* 3tdp_A*
Probab=71.77 E-value=12 Score=31.91 Aligned_cols=110 Identities=11% Similarity=0.134 Sum_probs=62.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHhccCCCccChHHHHHHHHhccCcchhHHHHHHHHhHHHHHHHHHHHHhhchhhhhcCCC
Q 024444 74 VGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGG 153 (267)
Q Consensus 74 ~~~~~~~l~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~ 153 (267)
...+..++.+++.+..+++.-+..--+ |-.......+.|+.+|++.+--|.-=.+|=++|++++..+.... ...+.+
T Consensus 62 ~~~ll~g~~F~~Gl~lVvl~g~eLfTg--n~l~~~~~~~~~~~s~~~~lr~W~~v~~gNliGa~~~a~l~~~s-g~~~~~ 138 (268)
T 3tds_E 62 MTKIVMGLSFAIALSLVIMTGTELFTG--NNMVMSAGMLNKGVSIKDTSKIWAYSWVGNLIGALVLGIIFVGT-GLVDKG 138 (268)
T ss_dssp THHHHHHHTCTHHHHHHHHHTCCCHHH--HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TTTSSS
T ss_pred HHHHHHHHHHHHHHHHHHHhCcccccc--chHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-ccCCCc
Confidence 344555666666555555543332111 33322234577889999887777766677777766655544210 000011
Q ss_pred c--------ccccCCCccchhHHHHHHHHHHHHHHHHHhcC
Q 024444 154 A--------NTVASGYNKGSALGAEIIGTFVLVYTVFSATD 186 (267)
Q Consensus 154 ~--------~~~~~~~~~~~~~~~E~~~T~~l~~~il~~~~ 186 (267)
. .....+.+..+.|+-=.+|.++.++.++....
T Consensus 139 ~~~~~~~~ia~~K~~~~~~~~f~~gIlcN~lVclaVw~~~~ 179 (268)
T 3tds_E 139 PVAEFFANTAASKASMPFTALFFRGILCNILVCVSVLCSFR 179 (268)
T ss_dssp HHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 0 00112446678899999999999998886543
No 30
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=42.81 E-value=2.4 Score=37.47 Aligned_cols=21 Identities=33% Similarity=0.558 Sum_probs=17.5
Q ss_pred hccCCCccChHHHHHHHHhcc
Q 024444 95 AGISGGHINPAVTFGLFLARK 115 (267)
Q Consensus 95 ~~iSGah~NPavTla~~l~g~ 115 (267)
++-||||++||++++-.+..+
T Consensus 9 ~GGTgGHi~palala~~L~~~ 29 (365)
T 3s2u_A 9 AGGTGGHVFPALACAREFQAR 29 (365)
T ss_dssp CCSSHHHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHHHhC
Confidence 445889999999999998754
No 31
>4fc4_A Nitrite transporter NIRC; alpha-helical inner membrane protein, ION channel, cytoplasm membrane, transport protein; HET: BOG; 2.40A {Salmonella enterica subsp}
Probab=33.92 E-value=2.1e+02 Score=24.00 Aligned_cols=108 Identities=11% Similarity=0.056 Sum_probs=58.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhcc-CCCccChHHHHHHHHhccCcchhHHHHHHHHhHHHHHHHHHHHHhhchh--hhhcCC
Q 024444 76 LLGIAWAFGGMIFVLVYCTAGI-SGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHE--YNSLGG 152 (267)
Q Consensus 76 ~~~~~l~~g~~v~~~i~~~~~i-SGah~NPavTla~~l~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~--~~~~~~ 152 (267)
.+..++.+++.+..+++.-+.. +| |-.......+.||.+|++.+--|.-=.+|=++|++++..+.... ......
T Consensus 58 ~ll~g~~F~vGl~lVvl~g~eLfTg---n~l~~~~~~~~~~~s~~~~lr~W~~v~~gNliGa~~~a~l~~~~g~~~~~~~ 134 (261)
T 4fc4_A 58 PLVMGATFGIALTLVIIAGSELFTG---HTMFLTLGVKAGTISHGQMWAILPQTWLGNLVGSVFVALLYSWGGGSLLPVD 134 (261)
T ss_dssp HHHHHHHTTHHHHHHHHTCCCCHHH---HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTSSCT
T ss_pred HHHHHHHHHHHHHHHHHcCCccccc---chHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCchH
Confidence 3445566555555554443222 11 43322234566889998888777666666666666554443211 000000
Q ss_pred Ccc-----cccCCCccchhHHHHHHHHHHHHHHHHHhcC
Q 024444 153 GAN-----TVASGYNKGSALGAEIIGTFVLVYTVFSATD 186 (267)
Q Consensus 153 ~~~-----~~~~~~~~~~~~~~E~~~T~~l~~~il~~~~ 186 (267)
... ....+.+..+.|+-=.+|.++.++.++....
T Consensus 135 ~~~~~~ia~~K~~~~~~~~f~~gIlcN~lVclaVw~~~~ 173 (261)
T 4fc4_A 135 TSIVHSVALAKTTAPATVLFFKGALCNWLVCLAIWMAIR 173 (261)
T ss_dssp TSHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 100 0012335678888899999999998876543
No 32
>1pfi_A Major coat protein of PF1 virus; complex(viral coat protein/DNA), helical virus; HET: DC; 3.00A {Pseudomonas phage PF1} SCOP: h.1.4.1 PDB: 1ifn_A 1ifm_A* 1pjf_A 1ql1_A 1ql2_A 1zn5_A 2ifm_A 2ifn_A 2klv_A 2ksj_A 2xkm_A 3ifm_A 4ifm_A
Probab=27.46 E-value=16 Score=21.84 Aligned_cols=23 Identities=13% Similarity=-0.022 Sum_probs=17.3
Q ss_pred eEEeechhHHHHHHHHHHHHhhC
Q 024444 245 VRKKLCISEFCVCLLCFYDILNK 267 (267)
Q Consensus 245 wVy~v~P~~Ga~~a~~ly~~~~~ 267 (267)
--|++|-+.--.++++.|+.++|
T Consensus 23 ~~~IVGaLvil~VAGLiysm~RK 45 (46)
T 1pfi_A 23 GGYIVGALVILAVAGLIYSMLRK 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 33677777777788899998875
Done!