BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024445
         (267 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3H8T|A Chain A, Structure Of Porphyromonas Gingivalis Heme-Binding Protein
           Hmuy In Complex With Heme
 pdb|3H8T|B Chain B, Structure Of Porphyromonas Gingivalis Heme-Binding Protein
           Hmuy In Complex With Heme
          Length = 191

 Score = 31.2 bits (69), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 86  EANQQSSPIAIARQFVIAMLVMDTWQYF 113
           E NQ S+P A+ +   I     +TWQYF
Sbjct: 2   EPNQPSTPEAVTKTVTIDASKYETWQYF 29


>pdb|1WCS|A Chain A, A Mutant Of Trypanosoma Rangeli Sialidase Displaying
           Trans- Sialidase Activity
          Length = 641

 Score = 28.9 bits (63), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 14/35 (40%), Positives = 21/35 (60%)

Query: 25  LYVVLGSFDKLDNYRLHSRIDEDEKNLVSKGDVVK 59
           LY+++GSF+K  NY    R   D + L+  G+V K
Sbjct: 110 LYILVGSFNKTRNYWTQHRDGSDWEPLLVVGEVTK 144


>pdb|1M7X|A Chain A, The X-Ray Crystallographic Structure Of Branching Enzyme
 pdb|1M7X|B Chain B, The X-Ray Crystallographic Structure Of Branching Enzyme
 pdb|1M7X|C Chain C, The X-Ray Crystallographic Structure Of Branching Enzyme
 pdb|1M7X|D Chain D, The X-Ray Crystallographic Structure Of Branching Enzyme
          Length = 617

 Score = 27.7 bits (60), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 22/102 (21%), Positives = 37/102 (36%), Gaps = 7/102 (6%)

Query: 108 DTWQYFMHRYMHHNKFLYRHIHSLHHRLVVPYAFGALYNHPIEGLLNDTIGGALSFLVSG 167
           D W + + R +      YRH  ++H     PY F  L       +++D     L F+   
Sbjct: 482 DNWHHGVQRLVRDLNLTYRHHKAMHELDFDPYGFEWL-------VVDDKERSVLIFVRRD 534

Query: 168 MSPRVSIFFFSFATIKTVDDHCGLWLPGNLFHVFFKNNTAYH 209
                 I   +F  +   D   G+  PG    +   ++  YH
Sbjct: 535 KEGNEIIVASNFTPVPRHDYRFGINQPGKWREILNTDSMHYH 576


>pdb|4DFS|A Chain A, Structure Of The Catalytic Domain Of An
           Endo-1,3-Beta-Glucanase (Laminarinase) From Thermotoga
           Petrophila Rku-1
 pdb|4DFS|B Chain B, Structure Of The Catalytic Domain Of An
           Endo-1,3-Beta-Glucanase (Laminarinase) From Thermotoga
           Petrophila Rku-1
          Length = 267

 Score = 27.3 bits (59), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 7/63 (11%)

Query: 177 FSFATIKTVDDHCGLWLPGNLFHVFFKNNTAYHDIHHQLYGSKYNFAQPFFVMWDRILGT 236
           F   +I+  +D    ++ G L+HV  K+  A         G ++ F  PFF++ +  +G 
Sbjct: 186 FHIFSIEWDEDEVEWYVDGQLYHVLSKDELA-------ELGLEWVFDHPFFLILNVAVGG 238

Query: 237 YMP 239
           Y P
Sbjct: 239 YWP 241


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.142    0.444 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,775,935
Number of Sequences: 62578
Number of extensions: 369625
Number of successful extensions: 790
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 788
Number of HSP's gapped (non-prelim): 6
length of query: 267
length of database: 14,973,337
effective HSP length: 97
effective length of query: 170
effective length of database: 8,903,271
effective search space: 1513556070
effective search space used: 1513556070
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.9 bits)