Query 024445
Match_columns 267
No_of_seqs 242 out of 1462
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 04:40:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024445.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024445hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0874 Sphingolipid hydroxyla 100.0 3E-55 6.4E-60 366.8 3.2 259 1-259 7-285 (287)
2 KOG0873 C-4 sterol methyl oxid 100.0 1.7E-50 3.7E-55 352.9 13.4 234 4-245 27-265 (283)
3 COG3000 ERG3 Sterol desaturase 100.0 7E-33 1.5E-37 247.7 22.0 163 91-257 90-254 (271)
4 PLN02869 fatty aldehyde decarb 100.0 3.2E-28 7E-33 232.1 18.5 147 90-242 119-278 (620)
5 KOG0872 Sterol C5 desaturase [ 99.9 8.1E-28 1.8E-32 207.8 11.9 147 91-246 123-269 (312)
6 PF04116 FA_hydroxylase: Fatty 99.9 1.7E-21 3.7E-26 151.3 8.7 113 101-214 2-114 (114)
7 PLN02434 fatty acid hydroxylas 99.3 1.9E-11 4.2E-16 106.5 12.2 137 95-241 82-231 (237)
8 PRK07424 bifunctional sterol d 98.6 1.7E-07 3.8E-12 88.5 9.3 139 100-241 12-177 (406)
9 KOG0539 Sphingolipid fatty aci 98.2 1.2E-05 2.6E-10 68.2 9.3 136 96-241 83-234 (240)
10 PLN02601 beta-carotene hydroxy 97.9 0.00017 3.7E-09 63.5 10.6 114 100-223 140-268 (303)
11 PF10520 Kua-UEV1_localn: Kua- 87.2 0.65 1.4E-05 39.1 3.3 53 184-238 102-157 (178)
12 cd03510 Rhizobitoxine-FADS-lik 80.9 19 0.00041 30.0 9.6 15 123-137 71-85 (175)
13 KOG3011 Ubiquitin-conjugating 77.8 6.2 0.00014 34.9 5.7 137 93-235 106-261 (293)
14 cd03505 Delta9-FADS-like The D 76.3 13 0.00028 31.3 7.2 17 121-137 53-69 (178)
15 COG3239 DesA Fatty acid desatu 53.6 73 0.0016 29.5 8.1 16 122-137 112-127 (343)
16 PLN02434 fatty acid hydroxylas 46.5 41 0.00088 29.7 4.9 46 95-141 165-213 (237)
17 PLN02220 delta-9 acyl-lipid de 39.5 71 0.0015 29.2 5.5 19 204-223 241-259 (299)
18 KOG1600 Fatty acid desaturase 38.9 60 0.0013 29.8 4.9 36 206-242 122-162 (321)
19 PF10520 Kua-UEV1_localn: Kua- 38.8 1.2E+02 0.0026 25.5 6.4 28 125-152 126-156 (178)
20 PF00487 FA_desaturase: Fatty 38.4 57 0.0012 27.2 4.6 14 204-217 216-229 (257)
21 PRK10062 hypothetical protein; 33.7 1.6E+02 0.0034 26.9 6.6 60 50-120 54-113 (303)
22 PF05661 DUF808: Protein of un 32.1 1.7E+02 0.0036 26.7 6.5 60 50-120 54-113 (295)
23 COG1398 OLE1 Fatty-acid desatu 30.9 1.6E+02 0.0035 26.6 6.2 16 202-217 232-247 (289)
24 PLN02601 beta-carotene hydroxy 28.2 4.6E+02 0.0099 23.8 10.2 37 99-136 212-261 (303)
25 cd03511 Rhizopine-oxygenase-li 26.9 4.2E+02 0.0091 23.4 8.4 15 123-137 93-107 (285)
26 cd03514 CrtR_beta-carotene-hyd 26.4 1.2E+02 0.0025 25.9 4.5 16 123-138 73-88 (207)
27 cd03508 Delta4-sphingolipid-FA 24.0 5.4E+02 0.012 23.2 8.7 14 124-137 96-109 (289)
28 PRK10835 hypothetical protein; 22.9 4.8E+02 0.01 24.3 8.3 65 57-127 298-364 (373)
No 1
>KOG0874 consensus Sphingolipid hydroxylase [Lipid transport and metabolism]
Probab=100.00 E-value=3e-55 Score=366.78 Aligned_cols=259 Identities=65% Similarity=1.156 Sum_probs=232.8
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHcchhhhhhhcCCCCCCcCcccccchhhHHHHHHHHHHHHHHHHHHHHHHhc
Q 024445 1 MAFTISDELLGTFVPILVYWLYSGLYVVLGSFDKLDNYRLHSRIDEDEKNLVSKGDVVKGVLLQQVFQAIVAILLFAVTG 80 (267)
Q Consensus 1 ~~~~~s~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~kykiq~~~~~~~~~~~~~~~~~~~vl~~~~~~~~~~~~l~~~~~ 80 (267)
|-+.+||+.++++.++++||+.|++|...+-.+.++||||+|++++..+|.+++-.+++.|+++|++|.+++++++...|
T Consensus 7 ml~~~sd~~l~lvaPvvvYWv~Sg~f~~yi~l~~~ekYRiHp~ee~a~rN~vskmaVvk~VllQq~~q~iVgiil~~feg 86 (287)
T KOG0874|consen 7 MLFEMSDEVLGLVAPVVVYWVYSGIFHVYITLHSLEKYRIHPKEEEAERNLVSKMAVVKGVLLQQIIQAIVGIILFHFEG 86 (287)
T ss_pred hccccchhHhhhhhHHHHHhhhcCCceEEEEechhhhhcCCChHHHHHhccchHHHHHHHHHHHHHHHHHHHhheEEeeC
Confidence 67889999999999999999999988877777789999999999999999999999999999999999999998887655
Q ss_pred CCCCc------------CCcCCC--------ChHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhhccCCCCCCcc
Q 024445 81 NGAGA------------EANQQS--------SPIAIARQFVIAMLVMDTWQYFMHRYMHHNKFLYRHIHSLHHRLVVPYA 140 (267)
Q Consensus 81 ~~~~~------------~~~~~p--------s~~~~~~~~~~~~l~~D~~~Y~~HR~~H~~~~Ly~~~H~~HH~~~~p~~ 140 (267)
..... .++..| +....+.|+..++++.|.|+|++||.||-+++||+++|+.||+...|++
T Consensus 87 ~~~~~~ea~qm~k~~a~~~r~ip~~a~~~~y~~~v~A~q~f~aflviDtWQYF~HRymH~NK~LYk~iHs~HHrL~VPYa 166 (287)
T KOG0874|consen 87 SDATADEAQQMWKLRADLPRIIPDAAIYYGYSFLVLARQFFAAFLVIDTWQYFLHRYMHMNKFLYKHIHSQHHRLIVPYA 166 (287)
T ss_pred CCCChHHHHHHHHhhccccccCCchhhhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhceeEecchh
Confidence 43211 112222 5667789999999999999999999999999999999999999999999
Q ss_pred hhhcccChHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHhhhcCcccCCcccchhcccCchHHhhhhccCCCCc
Q 024445 141 FGALYNHPIEGLLNDTIGGALSFLVSGMSPRVSIFFFSFATIKTVDDHCGLWLPGNLFHVFFKNNTAYHDIHHQLYGSKY 220 (267)
Q Consensus 141 ~~~~~~hp~E~ll~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~Hsg~~~p~~~~~~~~~~~~~~H~~HH~~~~~~~ 220 (267)
..|.|+||+|.++.+++++.+..++.|+++.+.++++.+.++.++.+||||++|.++++++|-+++++||+||+..+.++
T Consensus 167 yGALyNhP~EGllLDT~G~gla~l~sglspr~aiifFtfaTiKTVDDHCGy~lP~dpfqm~F~NNa~YHDiHHQ~yG~k~ 246 (287)
T KOG0874|consen 167 YGALYNHPVEGLLLDTIGGGLAFLLSGLSPRTAIIFFTFATIKTVDDHCGYWLPGDPFQMFFPNNAAYHDIHHQLYGTKY 246 (287)
T ss_pred hhhhhcCcchhhhhhhhchHHHHHHcCCCccceEEEEEeeeeeeeccccccccCCCceeEeccCCchhhhhhhhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999888899999999999988889
Q ss_pred ccCCCCchhhhhhcCCCCCCCCCCCCCCCcccccccccc
Q 024445 221 NFAQPFFVMWDRILGTYMPYSLEKRPDGGFEALATKDYN 259 (267)
Q Consensus 221 Nyg~~~~~~wD~lfGT~~~~~~~~~~~~g~~~~~~~~~~ 259 (267)
||++++|++||+++||+.++..++|-+++...|+.|..|
T Consensus 247 NFsQPFFtfWD~ilgTYmp~~~E~~~ekk~k~kn~K~~n 285 (287)
T KOG0874|consen 247 NFSQPFFTFWDRILGTYMPYSLEKRLEKKFKAKNFKAMN 285 (287)
T ss_pred ccCCcHHHHHHHHHhhcCCchhccccccccccccchhcc
Confidence 999999999999999999999988888776555555443
No 2
>KOG0873 consensus C-4 sterol methyl oxidase [Lipid transport and metabolism]
Probab=100.00 E-value=1.7e-50 Score=352.88 Aligned_cols=234 Identities=25% Similarity=0.335 Sum_probs=198.2
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHcc---hhhhhhhcCCCCCCcCcccccchhhHHHHHHHHHHHHHHHHHHHHH-Hh
Q 024445 4 TISDELLGTFVPILVYWLYSGLYVVLGS---FDKLDNYRLHSRIDEDEKNLVSKGDVVKGVLLQQVFQAIVAILLFA-VT 79 (267)
Q Consensus 4 ~~s~~~~~~~~~~~~y~~~~~~~~~~~~---~~~~~kykiq~~~~~~~~~~~~~~~~~~~vl~~~~~~~~~~~~l~~-~~ 79 (267)
++.-...++++..++||++|+++.++|. +++++||||||+++++.. ..++|++.|+.||++...+.+++.+ ..
T Consensus 27 ~l~~~~~~~~~~~~~y~l~~lpf~~iD~t~~~~~~~rYKIQp~k~~s~~---~~~kc~k~vl~n~~~v~~p~~~~~y~~~ 103 (283)
T KOG0873|consen 27 LLLCVGGPFIVHELVYWLFCLPFIFIDVTNRPPFLRRYKIQPKKNPSLS---KQLKCLKVVLLNHFLVVLPLTLVSYPFV 103 (283)
T ss_pred EEEeechhHHHHHHHHHHhcchheEeecccCcchhhhhccCCCCCCCHH---HHHHHHHHHHHHHHHHHhhHHHHhHHHH
Confidence 4444556688999999999999999987 889999999999887544 3689999999999987666554443 22
Q ss_pred cCCCCcCCcCCCChHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhhccCCCCCCcchhhcccChHHHHHHHHHHH
Q 024445 80 GNGAGAEANQQSSPIAIARQFVIAMLVMDTWQYFMHRYMHHNKFLYRHIHSLHHRLVVPYAFGALYNHPIEGLLNDTIGG 159 (267)
Q Consensus 80 ~~~~~~~~~~~ps~~~~~~~~~~~~l~~D~~~Y~~HR~~H~~~~Ly~~~H~~HH~~~~p~~~~~~~~hp~E~ll~~~~~~ 159 (267)
...+.....++|++.+++.|+++|++++|+++||.||++|+ +++||.+||+||++++|.+.+|.|+||+|.++.++.+.
T Consensus 104 ~~~~~~~~~plPt~~~~l~~l~i~~liEd~~fY~~HRL~H~-~~~Yk~iHKvHHe~taPf~~sa~YaHp~E~~~lg~~~~ 182 (283)
T KOG0873|consen 104 EWFGLPSGAPLPSWKEMLAQLVVFFLIEDIGFYWSHRLFHH-KWLYKYIHKVHHEYTAPFGLSAEYAHPLEHLFLGLGTV 182 (283)
T ss_pred HHhCCCcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hHHHHHHHhhhhcccCchhHhhhhcCHHHHHHcCChhh
Confidence 22333334468999999999999999999999999999996 99999999999999999999999999999999987655
Q ss_pred HHHHHhhCCcHHHHHHHHHHHHHHHHhhhcCcccCCcccch-hcccCchHHhhhhccCCCCcccCCCCchhhhhhcCCCC
Q 024445 160 ALSFLVSGMSPRVSIFFFSFATIKTVDDHCGLWLPGNLFHV-FFKNNTAYHDIHHQLYGSKYNFAQPFFVMWDRILGTYM 238 (267)
Q Consensus 160 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~Hsg~~~p~~~~~~-~~~~~~~~H~~HH~~~~~~~Nyg~~~~~~wD~lfGT~~ 238 (267)
..|. +++.|+.+.++|++++++.+++.||||++|++..+. ++.+++++||+||..+ ++||+. .|+.|||++||+.
T Consensus 183 ~~p~-~~~~H~~t~wiw~~l~i~~t~~~HsGY~fPwsl~~~~pfy~ga~~HD~HH~~f--~~n~~~-~f~~~D~i~GTd~ 258 (283)
T KOG0873|consen 183 MGPA-LLCGHVITLWIWIALRILETVESHSGYDFPWSLSKLIPFYGGAEHHDYHHLVF--IGNFAS-VFGYLDRIHGTDS 258 (283)
T ss_pred hhhH-HhhhHHHHHHHHHHHHHHHHhhccCCCCCCccccccCcccCCCcccchhhhhc--cccccc-hhHHHHHHhccCc
Confidence 5454 445599999999999999999999999999987653 4678999999999988 679986 6999999999999
Q ss_pred CCCCCCC
Q 024445 239 PYSLEKR 245 (267)
Q Consensus 239 ~~~~~~~ 245 (267)
.+++.++
T Consensus 259 ~~~~~k~ 265 (283)
T KOG0873|consen 259 TYRALKE 265 (283)
T ss_pred cHhhhhh
Confidence 8876433
No 3
>COG3000 ERG3 Sterol desaturase [Lipid metabolism]
Probab=100.00 E-value=7e-33 Score=247.69 Aligned_cols=163 Identities=31% Similarity=0.487 Sum_probs=137.1
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhhccCCCCCCcchhhcccChHHHHHHHHHHHHHHHHhhCCcH
Q 024445 91 SSPIAIARQFVIAMLVMDTWQYFMHRYMHHNKFLYRHIHSLHHRLVVPYAFGALYNHPIEGLLNDTIGGALSFLVSGMSP 170 (267)
Q Consensus 91 ps~~~~~~~~~~~~l~~D~~~Y~~HR~~H~~~~Ly~~~H~~HH~~~~p~~~~~~~~hp~E~ll~~~~~~~l~~~l~~~~~ 170 (267)
+.....++++++++++.|+++||.||+.|+++++|+ +|++||+..+|+++++.+.||+|.++..+. ..+++.++|.++
T Consensus 90 ~~~~~~~l~~~~~~~~~D~~~Y~~HR~~H~~~~~w~-~H~~HH~~~~~~~~t~~~~hp~e~ll~~~~-~~~~~~l~~~~~ 167 (271)
T COG3000 90 PGPLPFALQLLLAFLFLDLGYYWAHRLLHRVPLLWA-FHKVHHSSEVPDPLTALRFHPLEILLLAFL-GLLPLLLLGLSP 167 (271)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-HHHhhcCcccCCchhhhhcChHHHHHHHHH-HHHHHHHhcCCH
Confidence 345667899999999999999999999999887775 999999999999999999999999988765 456667789999
Q ss_pred HHHHHHHHHHHHHHHhhhcCcccCCcccchh--cccCchHHhhhhccCCCCcccCCCCchhhhhhcCCCCCCCCCCCCCC
Q 024445 171 RVSIFFFSFATIKTVDDHCGLWLPGNLFHVF--FKNNTAYHDIHHQLYGSKYNFAQPFFVMWDRILGTYMPYSLEKRPDG 248 (267)
Q Consensus 171 ~~~~~~~~~~~~~~~~~Hsg~~~p~~~~~~~--~~~~~~~H~~HH~~~~~~~Nyg~~~~~~wD~lfGT~~~~~~~~~~~~ 248 (267)
.++.++.++..+.++++|||++.| .+.++. +.++|++|++||++++.++|||. ++++|||+|||+.++++++..+.
T Consensus 168 ~~~~~~~~~~~~~~~~~H~~~~~~-~~~~~~~~v~~~p~~H~lHH~~~~~~~Nyg~-~~~~WDrlFGT~~~~~~~~~~~~ 245 (271)
T COG3000 168 VAVALLFIFLLFWAVLIHSNLDLP-LPLGWLRYVFNTPRHHRLHHSKDPYDKNYGV-TLTFWDRLFGTYHPPDEREPDKI 245 (271)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccc-CCcccceeeecCchHHHHhccCCCCCCcchh-hhHHHHHHcccCCCCcccCcccc
Confidence 999999999999999999999976 433332 46899999999999854689995 79999999999998877655555
Q ss_pred Ccccccccc
Q 024445 249 GFEALATKD 257 (267)
Q Consensus 249 g~~~~~~~~ 257 (267)
|...++.++
T Consensus 246 ~~~~~~~~~ 254 (271)
T COG3000 246 GVKAKIALD 254 (271)
T ss_pred ccccccccc
Confidence 555444444
No 4
>PLN02869 fatty aldehyde decarbonylase
Probab=99.96 E-value=3.2e-28 Score=232.13 Aligned_cols=147 Identities=25% Similarity=0.438 Sum_probs=111.9
Q ss_pred CCChH--HHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhhccCCCCCCcchhhcccChH-HHHHHHHHHHHHHHHh-
Q 024445 90 QSSPI--AIARQFVIAMLVMDTWQYFMHRYMHHNKFLYRHIHSLHHRLVVPYAFGALYNHPI-EGLLNDTIGGALSFLV- 165 (267)
Q Consensus 90 ~ps~~--~~~~~~~~~~l~~D~~~Y~~HR~~H~~~~Ly~~~H~~HH~~~~p~~~~~~~~hp~-E~ll~~~~~~~l~~~l- 165 (267)
.|.|. ..+..+++.+...|+++||+||++|+ +++|+++|++||++.+|.++++. .||+ |.+...+ ...+|+++
T Consensus 119 ~P~W~~~g~l~~~Llhv~~~Df~fYW~HRllH~-~~LYwr~HkvHHss~~~~P~Ts~-~HP~~E~L~y~l-l~~IPLlll 195 (620)
T PLN02869 119 MPLWRTDGVLITILLHMGPVEFLYYWLHRALHH-HYLYSRYHSHHHSSIVTEPITSV-IHPFAEHIAYFL-LFAIPLLTT 195 (620)
T ss_pred CcccccchHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHhhccCCCCCCchhhh-cCcHHHHHHHHH-HHHHHHHHH
Confidence 45443 45667788888899999999999999 67888899999999999999876 7886 5444332 22334432
Q ss_pred --hC-CcHHHHHHHHHHHHHHHHhhhcCcc-cCCcccch-----hcccCchHHhhhhccCCCCcccCCCCchhhhhhcCC
Q 024445 166 --SG-MSPRVSIFFFSFATIKTVDDHCGLW-LPGNLFHV-----FFKNNTAYHDIHHQLYGSKYNFAQPFFVMWDRILGT 236 (267)
Q Consensus 166 --~~-~~~~~~~~~~~~~~~~~~~~Hsg~~-~p~~~~~~-----~~~~~~~~H~~HH~~~~~~~Nyg~~~~~~wD~lfGT 236 (267)
.| .+..+.++++.+..+.++++|||++ +|+.+.+. .+++||++|++||++. ++|||. +|++|||+|||
T Consensus 196 i~~g~~hi~t~~~yli~~~f~~~~gHSN~El~P~~~~~~~ppLkyll~TPsfHdlHHs~f--d~NYGl-fF~~WDrLFGT 272 (620)
T PLN02869 196 IFTGTASIAAFFGYISYIDFMNNMGHCNFELIPKWLFSIFPPLKYLMYTPSYHSLHHTQF--RTNYSL-FMPIYDYIYGT 272 (620)
T ss_pred hhcccchHHHHHHHHHHHHHHhcccccCccccccchhccCCcchheecCchHHhHHhccC--CcCccc-chHHHHhccCC
Confidence 22 4566777788888888999999997 56543221 2468999999999986 789996 89999999999
Q ss_pred CCCCCC
Q 024445 237 YMPYSL 242 (267)
Q Consensus 237 ~~~~~~ 242 (267)
+.+..+
T Consensus 273 ~d~~s~ 278 (620)
T PLN02869 273 MDKSSD 278 (620)
T ss_pred CCCCch
Confidence 976543
No 5
>KOG0872 consensus Sterol C5 desaturase [Lipid transport and metabolism]
Probab=99.95 E-value=8.1e-28 Score=207.76 Aligned_cols=147 Identities=26% Similarity=0.465 Sum_probs=128.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhhccCCCCCCcchhhcccChHHHHHHHHHHHHHHHHhhCCcH
Q 024445 91 SSPIAIARQFVIAMLVMDTWQYFMHRYMHHNKFLYRHIHSLHHRLVVPYAFGALYNHPIEGLLNDTIGGALSFLVSGMSP 170 (267)
Q Consensus 91 ps~~~~~~~~~~~~l~~D~~~Y~~HR~~H~~~~Ly~~~H~~HH~~~~p~~~~~~~~hp~E~ll~~~~~~~l~~~l~~~~~ 170 (267)
-+|...+..++.++++.|+..||.||.+|+ +.+|++.|+.||.+...+++++.++||++.++++ ++..+-++++++|+
T Consensus 123 ~gw~~~~~~i~~flfF~Df~iYw~HR~lH~-~~vy~~LH~~HH~~~~~tpfAslafhpidg~lqa-ip~~I~~Fi~Plh~ 200 (312)
T KOG0872|consen 123 YGWFLLFVSIFLFLFFTDFGIYWAHRELHH-RGVYKRLHKPHHIWNICTPFASLAFHPIDGFLQA-IPYHIYPFIFPLHK 200 (312)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHhhhcchhhhhhccCchhhhhcCcchhHhhh-chhHheeeeecchH
Confidence 367777888888899999999999999999 5789999999999999999999999999999885 56666667889999
Q ss_pred HHHHHHHHHHHHHHHhhhcCcccCCcccchhcccCchHHhhhhccCCCCcccCCCCchhhhhhcCCCCCCCCCCCC
Q 024445 171 RVSIFFFSFATIKTVDDHCGLWLPGNLFHVFFKNNTAYHDIHHQLYGSKYNFAQPFFVMWDRILGTYMPYSLEKRP 246 (267)
Q Consensus 171 ~~~~~~~~~~~~~~~~~Hsg~~~p~~~~~~~~~~~~~~H~~HH~~~~~~~Nyg~~~~~~wD~lfGT~~~~~~~~~~ 246 (267)
.+++..+.+..++++..|.|......+ .++||.+|..||... ++|||+ ++++|||+|||.+.++.+..+
T Consensus 201 ~t~L~l~~f~~iwt~~IHd~~~~~l~~----~ingaahHtvHH~~f--~~NYG~-~tilwDrmfgSfr~p~~~~~d 269 (312)
T KOG0872|consen 201 VTYLSLFTFVNIWTISIHDGIYGSLNP----PINGAAHHTVHHTYF--DYNYGQ-YTILWDRMFGSFRAPDHEDFD 269 (312)
T ss_pred HHHHHHHHHHHhHheeeeccccccccC----ccccccccceeeeeE--ecCCCc-EEEeHHhccCcccCccccccc
Confidence 999999999999999999998554222 468999999999986 889997 899999999999988775333
No 6
>PF04116 FA_hydroxylase: Fatty acid hydroxylase superfamily; InterPro: IPR006694 This superfamily includes fatty acid and carotene hydroxylases and sterol desaturases. Beta-carotene hydroxylase is involved in zeaxanthin synthesis by hydroxylating beta-carotene, but the enzyme may be involved in other pathways []. This family includes C-5 sterol desaturase and C-4 sterol methyl oxidase. Members of this family are involved in cholesterol biosynthesis and biosynthesis a plant cuticular wax. These enzymes contain two copies of a HXHH motif. Members of this family are integral membrane proteins.; GO: 0005506 iron ion binding, 0016491 oxidoreductase activity, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process
Probab=99.85 E-value=1.7e-21 Score=151.32 Aligned_cols=113 Identities=27% Similarity=0.422 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHHHhhCCChhhhhHHhhccCCCCCCcchhhcccChHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHH
Q 024445 101 VIAMLVMDTWQYFMHRYMHHNKFLYRHIHSLHHRLVVPYAFGALYNHPIEGLLNDTIGGALSFLVSGMSPRVSIFFFSFA 180 (267)
Q Consensus 101 ~~~~l~~D~~~Y~~HR~~H~~~~Ly~~~H~~HH~~~~p~~~~~~~~hp~E~ll~~~~~~~l~~~l~~~~~~~~~~~~~~~ 180 (267)
++++++.|+++||+||++|+.|++|+ +|+.||+.++|+++++.+.+|+|.++...++..++.++.+.++.+..++.++.
T Consensus 2 ~~~~l~~d~~~Y~~HRl~H~~~~l~~-~H~~HH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (114)
T PF04116_consen 2 LLGFLLWDFWEYWMHRLLHKIPFLWR-IHKVHHSPKNPTPLSAFRFHPLEALLLALLPLLLPLLLLPFHALAFLLGIALF 80 (114)
T ss_pred eeeHHHHHHHHHHHHHHHhcCchHHH-HHHHHhCCcccCchHHHHcChHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 56889999999999999997799995 99999999999999999999999999887766555566788899999999999
Q ss_pred HHHHHhhhcCcccCCcccchhcccCchHHhhhhc
Q 024445 181 TIKTVDDHCGLWLPGNLFHVFFKNNTAYHDIHHQ 214 (267)
Q Consensus 181 ~~~~~~~Hsg~~~p~~~~~~~~~~~~~~H~~HH~ 214 (267)
.+.+...|||+..+.......+..++++|+.||+
T Consensus 81 ~~~~~~~H~~~~~~~~~~~~~~~~~~~~H~~HH~ 114 (114)
T PF04116_consen 81 YLWYIFIHSGYHHRFPPRLRYLFVTPRHHDLHHS 114 (114)
T ss_pred HHHHHHhhcCccCCCCCcchhHhcCHHHHHhhCc
Confidence 9999999999933222222235688999999995
No 7
>PLN02434 fatty acid hydroxylase
Probab=99.32 E-value=1.9e-11 Score=106.47 Aligned_cols=137 Identities=20% Similarity=0.210 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh-hCCC-------hhhhhHHhhccCCCCCCcchhhcccChHHHHHHHHHHHHHHHHhh
Q 024445 95 AIARQFVIAMLVMDTWQYFMHRY-MHHN-------KFLYRHIHSLHHRLVVPYAFGALYNHPIEGLLNDTIGGALSFLVS 166 (267)
Q Consensus 95 ~~~~~~~~~~l~~D~~~Y~~HR~-~H~~-------~~Ly~~~H~~HH~~~~p~~~~~~~~hp~E~ll~~~~~~~l~~~l~ 166 (267)
..+.-++++++++.+.+|.+||. +|.. +..|+ .|..||+.. .........|.-.++.......+..+++
T Consensus 82 ~~~~~~~~G~~~wtl~EY~lHRflfH~~p~~~~~~~~hfl-lHg~HH~~P--~D~~rLv~PP~~~~~l~~~~~~l~~~~~ 158 (237)
T PLN02434 82 AVVLMVAFGVFIWTLLEYILHRFLFHIKTKSYWGNTAHYL-LHGCHHKHP--MDGLRLVFPPAATAILCVPFWNLIALFA 158 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHHHHH-HHHHhhcCC--CCCCCeecCcHHHHHHHHHHHHHHHHHc
Confidence 44566788999999999999997 5741 23344 788999774 3332344666654444322222222333
Q ss_pred CCcHHH-HHHHHHHH----HHHHHhhhcCcccCCcccchhcccCchHHhhhhccCCCCcccCCCCchhhhhhcCCCCCCC
Q 024445 167 GMSPRV-SIFFFSFA----TIKTVDDHCGLWLPGNLFHVFFKNNTAYHDIHHQLYGSKYNFAQPFFVMWDRILGTYMPYS 241 (267)
Q Consensus 167 ~~~~~~-~~~~~~~~----~~~~~~~Hsg~~~p~~~~~~~~~~~~~~H~~HH~~~~~~~Nyg~~~~~~wD~lfGT~~~~~ 241 (267)
+..... ...-..+. -......|.+ -|...+ ...--+.|..||.+++ +.|||. ...+||++|||..+.+
T Consensus 159 ~~~~a~~~~~G~l~gYl~Yd~~Hy~lH~~--~p~~~~---~r~lkr~H~~HHfk~~-~~~fGV-Ts~~wD~vFGT~~~~~ 231 (237)
T PLN02434 159 TPATAPALFGGGLLGYVMYDCTHYFLHHG--QPSTDV---LRNLKKYHLNHHFRDQ-DKGFGI-TSSLWDRVFGTLPPSK 231 (237)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhc--CcchHH---HHHHHHHHHHHcCCCC-CCCCCc-CchHHHHhcCCCCCcc
Confidence 322211 11111111 1222344543 232221 1122589999999875 789997 5899999999986443
No 8
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=98.61 E-value=1.7e-07 Score=88.49 Aligned_cols=139 Identities=22% Similarity=0.270 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHHHHhhCCChhhhhHHhhccCCCCCCcc---------hhhcccChHHHHHHHHHHHHHHHHhhCC--
Q 024445 100 FVIAMLVMDTWQYFMHRYMHHNKFLYRHIHSLHHRLVVPYA---------FGALYNHPIEGLLNDTIGGALSFLVSGM-- 168 (267)
Q Consensus 100 ~~~~~l~~D~~~Y~~HR~~H~~~~Ly~~~H~~HH~~~~p~~---------~~~~~~hp~E~ll~~~~~~~l~~~l~~~-- 168 (267)
.+...+..|+.+=.+|-+.|...+||| +|..||++..+.- -+..|.+|.|++++.+++..++.++...
T Consensus 12 ~~~~~~~~~~~~d~~h~~~h~~~~l~~-~h~~hh~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 90 (406)
T PRK07424 12 ILGSILWVEIVRDSYHALAHQWNPLYR-LHNWHHRVFRPDLSVVSEEIYRKAHWYNDVPEALVMLLFGTLPVLLLQQWNV 90 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHH-HHHhHHhhcCCcCCcccHHHHhhhhhhcCCHHHHHHHHHhhHHHHHHhhhcc
Confidence 344556666666677888888889998 9999999876543 2477899999877766554444332211
Q ss_pred -c-------HHHHHHHHHHHHHH--HHhhh-cCc---ccCCcccch--hcccCchHHhhhhccCCCCcccCCCCchhhhh
Q 024445 169 -S-------PRVSIFFFSFATIK--TVDDH-CGL---WLPGNLFHV--FFKNNTAYHDIHHQLYGSKYNFAQPFFVMWDR 232 (267)
Q Consensus 169 -~-------~~~~~~~~~~~~~~--~~~~H-sg~---~~p~~~~~~--~~~~~~~~H~~HH~~~~~~~Nyg~~~~~~wD~ 232 (267)
+ ....+.|..-.++. .+... ++- +.|...... -++.++.+|..||..+. +.-|++ ++++-|+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~d~~h~~~~~~~~~~~~~v~~~~h~rh~~~~~-~~~~~~-~~~~~d~ 168 (406)
T PRK07424 91 PYGWLAWLGVLYTLTFLFGAIARGLGLPNADELTDLTHLPGPFETLPSQWFVNRPYHWRHHFDNQ-NAYYCG-TFTLVDK 168 (406)
T ss_pred cccchhhhhhHHHHHHHHHHHHHhcccccccccccccCCCCcccCCCccCeecCceeEEEEeccc-cceeee-eEEEeeh
Confidence 1 11111122111111 11122 211 234211110 13567899999998764 456775 6899999
Q ss_pred hcCCCCCCC
Q 024445 233 ILGTYMPYS 241 (267)
Q Consensus 233 lfGT~~~~~ 241 (267)
..||....+
T Consensus 169 ~~~ta~sl~ 177 (406)
T PRK07424 169 LMGTALSLK 177 (406)
T ss_pred hcCcccCCC
Confidence 999987543
No 9
>KOG0539 consensus Sphingolipid fatty acid hydroxylase [Lipid transport and metabolism]
Probab=98.18 E-value=1.2e-05 Score=68.23 Aligned_cols=136 Identities=24% Similarity=0.310 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCh------h----hhhHHhhccCCCCCCcchhhcccChHHHHHHHHHHHHHHHHh
Q 024445 96 IARQFVIAMLVMDTWQYFMHRYMHHNK------F----LYRHIHSLHHRLVVPYAFGALYNHPIEGLLNDTIGGALSFLV 165 (267)
Q Consensus 96 ~~~~~~~~~l~~D~~~Y~~HR~~H~~~------~----Ly~~~H~~HH~~~~p~~~~~~~~hp~E~ll~~~~~~~l~~~l 165 (267)
+..-++++++.+.+.+|..||+.-+.+ + -|- +|..||... .--.-..+.|.-..+.......+..++
T Consensus 83 ~~~~f~~Gvf~WTl~EY~lHRflFH~k~~~~s~~~~t~Hfl-~HGcHHk~P--~D~~RLVfPP~~~~il~~pfy~~~~~v 159 (240)
T KOG0539|consen 83 FSGLFVIGVFTWTLIEYTLHRFLFHIKPNPDSYWLITLHFL-IHGCHHKLP--MDGYRLVFPPTPFAILAAPFYLILSLV 159 (240)
T ss_pred hhHHHHHHHHHHHHHHHHHHheEEEecCCCCchHHHHHHHH-HhcccccCC--CCCceEecCCchHHHHHHHHHHHHHHh
Confidence 344578899999999999999853334 1 243 799999774 323345567766555433221222223
Q ss_pred hCCcHHHHHHHHH--HHH----HHHHhhhcCcccCCcccchhcccCchHHhhhhccCCCCcccCCCCchhhhhhcCCCCC
Q 024445 166 SGMSPRVSIFFFS--FAT----IKTVDDHCGLWLPGNLFHVFFKNNTAYHDIHHQLYGSKYNFAQPFFVMWDRILGTYMP 239 (267)
Q Consensus 166 ~~~~~~~~~~~~~--~~~----~~~~~~Hsg~~~p~~~~~~~~~~~~~~H~~HH~~~~~~~Nyg~~~~~~wD~lfGT~~~ 239 (267)
++ ++.....+.+ +.. .....-|-|- .|..+. +...-++|--||.+.. +.+||. ...+||++|||.-+
T Consensus 160 l~-~~~~~a~faG~l~GYV~YDmtHYyLHhg~-p~~~~~---~~~lK~yHl~HHfk~q-~~GfGI-tS~lWD~VFgTl~~ 232 (240)
T KOG0539|consen 160 LP-HPVAPAGFAGGLLGYVCYDMTHYYLHHGS-PPKRPY---LKHLKKYHLNHHFKHQ-DLGFGI-TSSLWDYVFGTLGP 232 (240)
T ss_pred cC-cchhhhhhccchhhhhhhhhhhhhhhcCC-CCCchH---HHHHHHHHhhhhhhcc-ccCccc-cHHHHHHHhccCCC
Confidence 22 2221111111 111 1111222221 112111 1223578888998764 678996 58999999999876
Q ss_pred CC
Q 024445 240 YS 241 (267)
Q Consensus 240 ~~ 241 (267)
.+
T Consensus 233 ~~ 234 (240)
T KOG0539|consen 233 LK 234 (240)
T ss_pred Cc
Confidence 54
No 10
>PLN02601 beta-carotene hydroxylase
Probab=97.85 E-value=0.00017 Score=63.51 Aligned_cols=114 Identities=24% Similarity=0.340 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHHh-hCCChhhhhHHhhccCCCCCCcchhhcccChHHHHHHHHHHHHHHHHhhCC-----cHHHH
Q 024445 100 FVIAMLVMDTWQYFMHRY-MHHNKFLYRHIHSLHHRLVVPYAFGALYNHPIEGLLNDTIGGALSFLVSGM-----SPRVS 173 (267)
Q Consensus 100 ~~~~~l~~D~~~Y~~HR~-~H~~~~Ly~~~H~~HH~~~~p~~~~~~~~hp~E~ll~~~~~~~l~~~l~~~-----~~~~~ 173 (267)
++..++..|++-.|.||. ||- ++|. .|+-||+...- ++ ..++ +=+++... +. +.++.+|. .+. .
T Consensus 140 ~lgtfvgMEf~Aw~aHKYvMHG--~LW~-lH~sHH~Pr~g-~F--E~ND-lFaVifAv-pA-IaL~~~G~~~~g~~p~-~ 209 (303)
T PLN02601 140 SVGAAVGMEFWARWAHRALWHD--SLWN-MHESHHKPREG-AF--ELND-VFAIVNAV-PA-IGLLYYGFFNKGLVPG-L 209 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--cchh-hhhhcCCCCCC-Cc--cccc-chhhhhHH-HH-HHHHHHhhccccccHH-H
Confidence 356777889999999996 785 7997 99999988642 22 2222 22222222 21 12223343 111 1
Q ss_pred HHH----HHHHHHHHHhhhcCc---ccCCcccc--hhcccCchHHhhhhccCCCCcccC
Q 024445 174 IFF----FSFATIKTVDDHCGL---WLPGNLFH--VFFKNNTAYHDIHHQLYGSKYNFA 223 (267)
Q Consensus 174 ~~~----~~~~~~~~~~~Hsg~---~~p~~~~~--~~~~~~~~~H~~HH~~~~~~~Nyg 223 (267)
+++ ++...+...+.|.|+ ++|+.+.. ..+-.-.+.|++||+...+..+||
T Consensus 210 ~fgiGlGITlYGiaYffVHDgLVHqRfp~~~~a~~~Y~rrl~~AHklHHa~Ke~Gv~FG 268 (303)
T PLN02601 210 CFGAGLGITVFGMAYMFVHDGLVHKRFPVGPIANVPYLRKVAAAHQLHHTDKFKGVPYG 268 (303)
T ss_pred HHHHHHhHHHHHHHHHHHhhhhhccccccCCCCCCHHHHHHHHHHHhhccCCcCCccce
Confidence 111 112223345688887 56654321 112233689999998333345777
No 11
>PF10520 Kua-UEV1_localn: Kua-ubiquitin conjugating enzyme hybrid localisation domain; InterPro: IPR019547 This entry represents part of the transcript of the fusion of two genes, the UEV1. UEV1 is an enzymatically inactive variant of the E2 ubiquitin-conjugating enzymes that regulate non-canonical elongation of ubiquitin chains, and Kua, an otherwise unknown gene. UEV1A is a nuclear protein, whereas both Kua and Kua-UEV localise to cytoplasmic structures, indicating that the addition of a Kua domain to UEV confers new biological properties. UEV1-Kua carries the B domain with its characteristic double histidine motif, and it is probably this domain which determines the cytoplasmic localisation. It is postulated that this hybrid transcript could preferentially direct the variant polyubiquitination of substrates closely associated with the cytoplasmic face of the endoplasmic reticulum, possibly, although not necessarily, in conjunction with membrane-bound ubiquitin-conjugating enzymes [].
Probab=87.16 E-value=0.65 Score=39.09 Aligned_cols=53 Identities=17% Similarity=0.012 Sum_probs=37.1
Q ss_pred HHhhhcCcccCCc--ccchh-cccCchHHhhhhccCCCCcccCCCCchhhhhhcCCCC
Q 024445 184 TVDDHCGLWLPGN--LFHVF-FKNNTAYHDIHHQLYGSKYNFAQPFFVMWDRILGTYM 238 (267)
Q Consensus 184 ~~~~Hsg~~~p~~--~~~~~-~~~~~~~H~~HH~~~~~~~Nyg~~~~~~wD~lfGT~~ 238 (267)
.-+.|.....|.. .++.. ++.+++.|..||..+. +.||+. ..++|+.+.-...
T Consensus 102 HkWsH~~~~~P~~V~~LQ~~gillsr~~H~~HH~aPh-~~~YCI-~tGw~N~~Ld~~~ 157 (178)
T PF10520_consen 102 HKWSHTYKSLPPWVRFLQDAGILLSRKHHRIHHVAPH-DTNYCI-TTGWLNPPLDKIR 157 (178)
T ss_pred HHHHcCCCCCCHHHHHHHHCCcccCchhhhccccCcc-cCCeEe-ecccchHHHHHhh
Confidence 4568886555521 22221 5678999999999864 679996 7899998876543
No 12
>cd03510 Rhizobitoxine-FADS-like This CD includes the dihydrorhizobitoxine fatty acid desaturase (RtxC) characterized in Bradyrhizobium japonicum USDA110, and other related proteins. Dihydrorhizobitoxine desaturase is reported to be involved in the final step of rhizobitoxine biosynthesis. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXX(X)HH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=80.93 E-value=19 Score=29.97 Aligned_cols=15 Identities=40% Similarity=0.510 Sum_probs=12.0
Q ss_pred hhhhHHhhccCCCCC
Q 024445 123 FLYRHIHSLHHRLVV 137 (267)
Q Consensus 123 ~Ly~~~H~~HH~~~~ 137 (267)
..||..|..||+..+
T Consensus 71 ~~~r~~H~~HH~~~~ 85 (175)
T cd03510 71 AAYRRSHLKHHRHLG 85 (175)
T ss_pred HHHHHHHHHHhCccC
Confidence 458889999999854
No 13
>KOG3011 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=77.80 E-value=6.2 Score=34.86 Aligned_cols=137 Identities=15% Similarity=0.079 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhCC-----ChhhhhHH--hhccCCCCCCcchhhcccChHHHHHHHHHHH---HHH
Q 024445 93 PIAIARQFVIAMLVMDTWQYFMHRYMHH-----NKFLYRHI--HSLHHRLVVPYAFGALYNHPIEGLLNDTIGG---ALS 162 (267)
Q Consensus 93 ~~~~~~~~~~~~l~~D~~~Y~~HR~~H~-----~~~Ly~~~--H~~HH~~~~p~~~~~~~~hp~E~ll~~~~~~---~l~ 162 (267)
|.+.++....+.+..|+..=.+|.+.=+ .|+.=+.+ =+-||.. |.+ -.+...+|.+....... .++
T Consensus 106 ~~~~~La~~aG~i~AD~~SGl~HWaaD~~Gsv~tP~vG~~f~rfreHH~d--P~t--ITr~~f~~~~~ll~~a~~f~v~~ 181 (293)
T KOG3011|consen 106 WLEPALAAYAGYITADLGSGVYHWAADNYGSVSTPWVGRQFERFQEHHKD--PWT--ITRRQFANNLHLLARAYTFIVLP 181 (293)
T ss_pred hHHHHHHHHHHHHHHhhhcceeEeeccccCccccchhHHHHHHHHhccCC--cce--eeHHHHhhhhHHHHHhheeEecC
Confidence 4556777888999999999999987543 13332222 4568876 322 23333344321111000 000
Q ss_pred H-HhhC---Cc--HHHHHHHHHHHHHHHHhhhcCcccCCc--ccch-hcccCchHHhhhhccCCCCcccCCCCchhhhhh
Q 024445 163 F-LVSG---MS--PRVSIFFFSFATIKTVDDHCGLWLPGN--LFHV-FFKNNTAYHDIHHQLYGSKYNFAQPFFVMWDRI 233 (267)
Q Consensus 163 ~-~l~~---~~--~~~~~~~~~~~~~~~~~~Hsg~~~p~~--~~~~-~~~~~~~~H~~HH~~~~~~~Nyg~~~~~~wD~l 233 (267)
. ++.. .| .....++.++..-..-+.|+=..+|-. .++. -++....+|..||..+. +.||+. ..++|.+.
T Consensus 182 ~d~~~q~~~~h~fV~~~~i~v~~tnQiHkWsHTy~gLP~wVv~LQd~hlilpRkhH~iHH~aPh-~~yyCI-~tGw~N~~ 259 (293)
T KOG3011|consen 182 LDLAFQDPVFHGFVFLFAICVLFTNQIHKWSHTYSGLPPWVVLLQDMHLILPRKHHRIHHVAPH-NTYYCI-VSGWWNWV 259 (293)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHhhcceecccccccccccCcc-ccceEE-eechhhch
Confidence 0 1111 11 112223334444445678854467732 1221 14556789999999875 779996 68999876
Q ss_pred cC
Q 024445 234 LG 235 (267)
Q Consensus 234 fG 235 (267)
.-
T Consensus 260 Le 261 (293)
T KOG3011|consen 260 LD 261 (293)
T ss_pred HH
Confidence 43
No 14
>cd03505 Delta9-FADS-like The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like CD includes the delta-9 and delta-11 acyl CoA desaturases found in various eukaryotes including vertebrates, insects, higher plants, and fungi. The delta-9 acyl-lipid desaturases are found in a wide range of bacteria. These enzymes play essential roles in fatty acid metabolism and the regulation of cell membrane fluidity. Acyl-CoA desaturases are the enzymes involved in the CoA-bound desaturation of fatty acids. Mammalian stearoyl-CoA delta-9 desaturase is a key enzyme in the biosynthesis of monounsaturated fatty acids, and in yeast, the delta-9 acyl-CoA desaturase (OLE1) reaction accounts for all de nova unsaturated fatty acid production in Saccharomyces cerevisiae. These non-heme, iron-containing, ER membrane-bound enzymes are part of a three-component enzyme system involving cytochrome b5, cytochrome b5 reductase, and the delta-9 fatty acid desaturase. This complex catalyzes the NADH- and oxygen-dependent i
Probab=76.30 E-value=13 Score=31.27 Aligned_cols=17 Identities=29% Similarity=0.427 Sum_probs=13.0
Q ss_pred ChhhhhHHhhccCCCCC
Q 024445 121 NKFLYRHIHSLHHRLVV 137 (267)
Q Consensus 121 ~~~Ly~~~H~~HH~~~~ 137 (267)
.+.-|.+.|+.||++..
T Consensus 53 s~~~W~~~HR~HH~~sD 69 (178)
T cd03505 53 SPLWWVADHRLHHRYSD 69 (178)
T ss_pred CHHHHHHHHHHhhcccC
Confidence 35567779999998874
No 15
>COG3239 DesA Fatty acid desaturase [Lipid metabolism]
Probab=53.56 E-value=73 Score=29.53 Aligned_cols=16 Identities=25% Similarity=0.395 Sum_probs=12.9
Q ss_pred hhhhhHHhhccCCCCC
Q 024445 122 KFLYRHIHSLHHRLVV 137 (267)
Q Consensus 122 ~~Ly~~~H~~HH~~~~ 137 (267)
+..||..|..||..++
T Consensus 112 ~~~wR~~H~~HH~~t~ 127 (343)
T COG3239 112 PVFWRISHNQHHAHTN 127 (343)
T ss_pred hhhhhhhHHHhhcccC
Confidence 3468988999999874
No 16
>PLN02434 fatty acid hydroxylase
Probab=46.46 E-value=41 Score=29.67 Aligned_cols=46 Identities=22% Similarity=0.227 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCh---hhhhHHhhccCCCCCCcch
Q 024445 95 AIARQFVIAMLVMDTWQYFMHRYMHHNK---FLYRHIHSLHHRLVVPYAF 141 (267)
Q Consensus 95 ~~~~~~~~~~l~~D~~~Y~~HR~~H~~~---~Ly~~~H~~HH~~~~p~~~ 141 (267)
.+....+++.+++|...|..|...-..+ .+. +.|..||--..-..+
T Consensus 165 ~~~~G~l~gYl~Yd~~Hy~lH~~~p~~~~~r~lk-r~H~~HHfk~~~~~f 213 (237)
T PLN02434 165 ALFGGGLLGYVMYDCTHYFLHHGQPSTDVLRNLK-KYHLNHHFRDQDKGF 213 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHH-HHHHHHcCCCCCCCC
Confidence 4456678888999999999997533222 244 489999965544333
No 17
>PLN02220 delta-9 acyl-lipid desaturase
Probab=39.46 E-value=71 Score=29.15 Aligned_cols=19 Identities=16% Similarity=0.288 Sum_probs=13.7
Q ss_pred cCchHHhhhhccCCCCcccC
Q 024445 204 NNTAYHDIHHQLYGSKYNFA 223 (267)
Q Consensus 204 ~~~~~H~~HH~~~~~~~Nyg 223 (267)
.|-..|+.||..+. +.+.|
T Consensus 241 ~GEgwHNnHHafP~-sar~G 259 (299)
T PLN02220 241 MGESWHNNHHAFES-SARQG 259 (299)
T ss_pred ccccccccccCCcc-chhhC
Confidence 35569999999874 45555
No 18
>KOG1600 consensus Fatty acid desaturase [Lipid transport and metabolism]
Probab=38.89 E-value=60 Score=29.82 Aligned_cols=36 Identities=17% Similarity=0.207 Sum_probs=28.1
Q ss_pred chHHhhhhccCC-----CCcccCCCCchhhhhhcCCCCCCCC
Q 024445 206 TAYHDIHHQLYG-----SKYNFAQPFFVMWDRILGTYMPYSL 242 (267)
Q Consensus 206 ~~~H~~HH~~~~-----~~~Nyg~~~~~~wD~lfGT~~~~~~ 242 (267)
.+.|+.||+..+ .+.+=|. +|+-.=|++-|..+..+
T Consensus 122 vrdHR~HHk~tdTD~DPhn~~rGF-~FsHvgWl~~~k~p~~k 162 (321)
T KOG1600|consen 122 VRDHRVHHKFTDTDADPHNPRRGF-WFSHVGWLLDKKHPQVK 162 (321)
T ss_pred HhhhhhhccccccCCCCCCcccch-hhhhhhhHhccCChHHH
Confidence 589999998653 3567785 78999999999876544
No 19
>PF10520 Kua-UEV1_localn: Kua-ubiquitin conjugating enzyme hybrid localisation domain; InterPro: IPR019547 This entry represents part of the transcript of the fusion of two genes, the UEV1. UEV1 is an enzymatically inactive variant of the E2 ubiquitin-conjugating enzymes that regulate non-canonical elongation of ubiquitin chains, and Kua, an otherwise unknown gene. UEV1A is a nuclear protein, whereas both Kua and Kua-UEV localise to cytoplasmic structures, indicating that the addition of a Kua domain to UEV confers new biological properties. UEV1-Kua carries the B domain with its characteristic double histidine motif, and it is probably this domain which determines the cytoplasmic localisation. It is postulated that this hybrid transcript could preferentially direct the variant polyubiquitination of substrates closely associated with the cytoplasmic face of the endoplasmic reticulum, possibly, although not necessarily, in conjunction with membrane-bound ubiquitin-conjugating enzymes [].
Probab=38.82 E-value=1.2e+02 Score=25.53 Aligned_cols=28 Identities=25% Similarity=0.494 Sum_probs=16.6
Q ss_pred hhHHhhccCCCC--CCcch-hhcccChHHHH
Q 024445 125 YRHIHSLHHRLV--VPYAF-GALYNHPIEGL 152 (267)
Q Consensus 125 y~~~H~~HH~~~--~p~~~-~~~~~hp~E~l 152 (267)
=|+-|+.||..+ .-++. ++.-+-|+|.+
T Consensus 126 sr~~H~~HH~aPh~~~YCI~tGw~N~~Ld~~ 156 (178)
T PF10520_consen 126 SRKHHRIHHVAPHDTNYCITTGWLNPPLDKI 156 (178)
T ss_pred CchhhhccccCcccCCeEeecccchHHHHHh
Confidence 456799999884 33343 34445556643
No 20
>PF00487 FA_desaturase: Fatty acid desaturase This entry is only a subset of the Pfam family.; InterPro: IPR005804 Fatty acid desaturases are enzymes that catalyse the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: Bacterial fatty acid desaturases. Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 1. ; GO: 0006629 lipid metabolic process
Probab=38.36 E-value=57 Score=27.24 Aligned_cols=14 Identities=36% Similarity=0.534 Sum_probs=9.9
Q ss_pred cCchHHhhhhccCC
Q 024445 204 NNTAYHDIHHQLYG 217 (267)
Q Consensus 204 ~~~~~H~~HH~~~~ 217 (267)
.+-.+|..||..+.
T Consensus 216 ~~~~~H~~HHl~P~ 229 (257)
T PF00487_consen 216 GGLNYHIEHHLFPG 229 (257)
T ss_pred cCCCChHHhCCCCC
Confidence 44568888888763
No 21
>PRK10062 hypothetical protein; Provisional
Probab=33.66 E-value=1.6e+02 Score=26.90 Aligned_cols=60 Identities=20% Similarity=0.168 Sum_probs=41.9
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCcCCCChHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 024445 50 NLVSKGDVVKGVLLQQVFQAIVAILLFAVTGNGAGAEANQQSSPIAIARQFVIAMLVMDTWQYFMHRYMHH 120 (267)
Q Consensus 50 ~~~~~~~~~~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~ps~~~~~~~~~~~~l~~D~~~Y~~HR~~H~ 120 (267)
..+-.+++.++.+.|-++..+.+.++... .|.....++-+-..++++|=.+=.+|++.|+
T Consensus 54 ELPvvw~IAkGSl~NKlIlvP~ALllSaf-----------aPw~itpLLMlGG~yLcfEGaEKv~~~~~~~ 113 (303)
T PRK10062 54 ELPVVWGVAKGSLINKVILVPLALIISAF-----------IPWAITPLLMIGGAFLCFEGVEKVLHMLEAR 113 (303)
T ss_pred cchhhHHHHHhhHhhhHHHHHHHHHHHHH-----------HHHHHHHHHHHhHHHHHHhhHHHHHHHHccC
Confidence 33446789999999999666444444432 3444444566667889999999999998876
No 22
>PF05661 DUF808: Protein of unknown function (DUF808); InterPro: IPR008526 This family consists of several bacterial proteins of unknown function.
Probab=32.06 E-value=1.7e+02 Score=26.66 Aligned_cols=60 Identities=23% Similarity=0.243 Sum_probs=41.8
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCcCCCChHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 024445 50 NLVSKGDVVKGVLLQQVFQAIVAILLFAVTGNGAGAEANQQSSPIAIARQFVIAMLVMDTWQYFMHRYMHH 120 (267)
Q Consensus 50 ~~~~~~~~~~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~ps~~~~~~~~~~~~l~~D~~~Y~~HR~~H~ 120 (267)
..+-.+++.++.+.|-++..+.+.++... .|-....++-+-..++++|=.+=.+|++.|+
T Consensus 54 ELPvvw~IakGSl~NKlIllP~ALllSaf-----------aPw~itplLmlGG~yLcfEGaEKv~~~~~~~ 113 (295)
T PF05661_consen 54 ELPVVWAIAKGSLRNKLILLPAALLLSAF-----------APWAITPLLMLGGAYLCFEGAEKVWHKFFHH 113 (295)
T ss_pred cchHHHHHHHhhhhhhHHHHHHHHHHHHH-----------HHHHHHHHHHHhHHHHHHhHHHHHHHHHcCC
Confidence 33446889999999998754444444432 3434444566667889999999999999887
No 23
>COG1398 OLE1 Fatty-acid desaturase [Lipid metabolism]
Probab=30.86 E-value=1.6e+02 Score=26.62 Aligned_cols=16 Identities=19% Similarity=0.387 Sum_probs=12.7
Q ss_pred cccCchHHhhhhccCC
Q 024445 202 FKNNTAYHDIHHQLYG 217 (267)
Q Consensus 202 ~~~~~~~H~~HH~~~~ 217 (267)
+..+-.-|+.||..+.
T Consensus 232 ~t~GEgwHNnHHafp~ 247 (289)
T COG1398 232 VTFGEGWHNNHHAFPN 247 (289)
T ss_pred eecccccccccccCcc
Confidence 3456789999999874
No 24
>PLN02601 beta-carotene hydroxylase
Probab=28.17 E-value=4.6e+02 Score=23.79 Aligned_cols=37 Identities=22% Similarity=0.279 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHhh-CCC------------hhhhhHHhhccCCCC
Q 024445 99 QFVIAMLVMDTWQYFMHRYM-HHN------------KFLYRHIHSLHHRLV 136 (267)
Q Consensus 99 ~~~~~~l~~D~~~Y~~HR~~-H~~------------~~Ly~~~H~~HH~~~ 136 (267)
-+-+++.++-+.+.+.|=.+ |.. +.+.+ -|++||+.+
T Consensus 212 giGlGITlYGiaYffVHDgLVHqRfp~~~~a~~~Y~rrl~~-AHklHHa~K 261 (303)
T PLN02601 212 GAGLGITVFGMAYMFVHDGLVHKRFPVGPIANVPYLRKVAA-AHQLHHTDK 261 (303)
T ss_pred HHHHhHHHHHHHHHHHhhhhhccccccCCCCCCHHHHHHHH-HHHhhccCC
Confidence 35567777777777888754 651 12333 799999844
No 25
>cd03511 Rhizopine-oxygenase-like This CD includes the putative hydrocarbon oxygenase, MocD, a bacterial rhizopine (3-O-methyl-scyllo-inosamine, 3-O-MSI) oxygenase, and other related proteins. It has been proposed that MocD, MocE (Rieske-like ferredoxin), and MocF (ferredoxin reductase) under the regulation of MocR, act in concert to form a ferredoxin oxygenase system that demethylates 3-O-MSI to form scyllo-inosamine. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA d
Probab=26.92 E-value=4.2e+02 Score=23.41 Aligned_cols=15 Identities=33% Similarity=0.552 Sum_probs=12.1
Q ss_pred hhhhHHhhccCCCCC
Q 024445 123 FLYRHIHSLHHRLVV 137 (267)
Q Consensus 123 ~Ly~~~H~~HH~~~~ 137 (267)
..||.-|..||..++
T Consensus 93 ~~~~~~H~~HH~~~~ 107 (285)
T cd03511 93 DFFRWSHARHHRYTQ 107 (285)
T ss_pred HHHHHHHHHHhcCcC
Confidence 358889999999873
No 26
>cd03514 CrtR_beta-carotene-hydroxylase Beta-carotene hydroxylase (CrtR), the carotenoid zeaxanthin biosynthetic enzyme catalyzes the addition of hydroxyl groups to the beta-ionone rings of beta-carotene to form zeaxanthin and is found in bacteria and red algae. Carotenoids are important natural pigments; zeaxanthin and lutein are the only dietary carotenoids that accumulate in the macular region of the retina and lens. It is proposed that these carotenoids protect ocular tissues against photooxidative damage. CrtR does not show overall amino acid sequence similarity to the beta-carotene hydroxylases similar to CrtZ, an astaxanthin biosynthetic beta-carotene hydroxylase. However, CrtR does show sequence similarity to the green alga, Haematococcus pluvialis, beta-carotene ketolase (CrtW), which converts beta-carotene to canthaxanthin. Sequences of the CrtR_beta-carotene-hydroxylase domain family, as well as, the CrtW_beta-carotene-ketolase domain family appear to be structurally related
Probab=26.35 E-value=1.2e+02 Score=25.90 Aligned_cols=16 Identities=25% Similarity=0.441 Sum_probs=13.0
Q ss_pred hhhhHHhhccCCCCCC
Q 024445 123 FLYRHIHSLHHRLVVP 138 (267)
Q Consensus 123 ~Ly~~~H~~HH~~~~p 138 (267)
..||.-|..||++++.
T Consensus 73 ~~w~~~H~~HH~~~~~ 88 (207)
T cd03514 73 PVFRRVHMQHHAHTND 88 (207)
T ss_pred HHHHHHHHHHhcCcCc
Confidence 4588899999998753
No 27
>cd03508 Delta4-sphingolipid-FADS-like The Delta4-sphingolipid Fatty Acid Desaturase (Delta4-sphingolipid-FADS)-like CD includes the integral-membrane enzymes, dihydroceramide Delta-4 desaturase, involved in the synthesis of sphingosine; and the human membrane fatty acid (lipid) desaturase (MLD), reported to modulate biosynthesis of the epidermal growth factor receptor; and other related proteins. These proteins are found in various eukaryotes including vertebrates, higher plants, and fungi. Studies show that MLD is localized to the endoplasmic reticulum. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for
Probab=24.01 E-value=5.4e+02 Score=23.21 Aligned_cols=14 Identities=29% Similarity=0.522 Sum_probs=11.8
Q ss_pred hhhHHhhccCCCCC
Q 024445 124 LYRHIHSLHHRLVV 137 (267)
Q Consensus 124 Ly~~~H~~HH~~~~ 137 (267)
.||+.|..||..++
T Consensus 96 ~~r~~H~~HH~~~n 109 (289)
T cd03508 96 SFKKYHLEHHRYLG 109 (289)
T ss_pred HHHHHHHHhccCCC
Confidence 37889999999975
No 28
>PRK10835 hypothetical protein; Provisional
Probab=22.88 E-value=4.8e+02 Score=24.31 Aligned_cols=65 Identities=15% Similarity=0.115 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCcCCCChHHHHHHHHHHHHHHHHHHHHHHHhhCCCh--hhhhH
Q 024445 57 VVKGVLLQQVFQAIVAILLFAVTGNGAGAEANQQSSPIAIARQFVIAMLVMDTWQYFMHRYMHHNK--FLYRH 127 (267)
Q Consensus 57 ~~~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~ps~~~~~~~~~~~~l~~D~~~Y~~HR~~H~~~--~Ly~~ 127 (267)
+=|..+.|.+.|+++...+++-.|- ..+.+........+.++.+-.=+...|..|. +..| ++||+
T Consensus 298 ~GrmaLTnYl~QSii~~~iFyg~gL-----~~~l~~~~~~~iai~v~~~q~~~S~~Wl~~f-~~GPlEwLwR~ 364 (373)
T PRK10835 298 VGRMALTNYLLQTLICTTLFYHFGL-----FMQFDRLQLLAFVPPVWAANILFSVIWLRYF-RQGPVEWLWRQ 364 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc-----ccCcCHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCcHHHHHHH
Confidence 3346888999999988777774333 1234444444555555555444444555554 4445 67874
Done!