Query 024445
Match_columns 267
No_of_seqs 242 out of 1462
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 08:21:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024445.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024445hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jwa_A Receptor tyrosine-prote 8.9 3.7E+02 0.013 16.3 4.3 25 13-42 18-42 (44)
2 2vgp_C Inner centromere protei 8.6 1.3E+02 0.0046 18.2 1.2 12 230-241 24-35 (43)
3 2l9u_A Receptor tyrosine-prote 7.0 4.2E+02 0.014 15.3 4.0 21 100-120 17-37 (40)
4 2l2t_A Receptor tyrosine-prote 6.3 5.1E+02 0.017 15.6 4.1 8 35-42 34-41 (44)
5 2kt5_B ICP27; chaperone, mRNA 6.2 4.7E+02 0.016 15.3 2.7 23 227-250 4-26 (40)
6 2ks1_B Epidermal growth factor 5.6 5.6E+02 0.019 15.4 3.9 15 11-25 16-30 (44)
7 1q90_G Cytochrome B6F complex 5.4 2.8E+02 0.0095 16.2 1.3 15 150-164 3-17 (37)
8 3t76_A VANU, transcriptional r 5.3 1.8E+02 0.0062 19.9 0.6 17 206-224 3-19 (88)
9 1vf5_G Protein PET G; photosyn 4.2 2.8E+02 0.0094 16.2 0.7 15 149-163 2-16 (37)
10 2jyl_A Capsid protein P24 (Ca) 3.8 1.7E+02 0.0056 21.3 -0.6 32 206-239 3-34 (105)
No 1
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=8.88 E-value=3.7e+02 Score=16.29 Aligned_cols=25 Identities=16% Similarity=0.243 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHcchhhhhhhcCCC
Q 024445 13 FVPILVYWLYSGLYVVLGSFDKLDNYRLHS 42 (267)
Q Consensus 13 ~~~~~~y~~~~~~~~~~~~~~~~~kykiq~ 42 (267)
++.++...+..+.+.++ ++|.|+|.
T Consensus 18 vVGvll~vi~~l~~~~~-----~RRR~~~~ 42 (44)
T 2jwa_A 18 VVGILLVVVLGVVFGIL-----IKRRQQKI 42 (44)
T ss_dssp HHHHHHHHHHHHHHHHH-----HHHHCSCC
T ss_pred HHHHHHHHHHHHHHHhh-----eehhhhhc
Confidence 33444444444443333 45666663
No 2
>2vgp_C Inner centromere protein A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD6; 1.7A {Xenopus laevis} PDB: 2bfy_C* 2bfx_C* 2vrx_C* 2vgo_C* 3ztx_C*
Probab=8.60 E-value=1.3e+02 Score=18.20 Aligned_cols=12 Identities=33% Similarity=0.337 Sum_probs=9.2
Q ss_pred hhhhcCCCCCCC
Q 024445 230 WDRILGTYMPYS 241 (267)
Q Consensus 230 wD~lfGT~~~~~ 241 (267)
-|++||+-.+++
T Consensus 24 ~d~iFG~I~pp~ 35 (43)
T 2vgp_C 24 VDRMYGTIDSPK 35 (43)
T ss_dssp HHHHTTTSCCCC
T ss_pred HHHHcCCCCCcC
Confidence 499999976554
No 3
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=6.96 E-value=4.2e+02 Score=15.26 Aligned_cols=21 Identities=38% Similarity=0.589 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHhhCC
Q 024445 100 FVIAMLVMDTWQYFMHRYMHH 120 (267)
Q Consensus 100 ~~~~~l~~D~~~Y~~HR~~H~ 120 (267)
.++++++...+.||--|-.|+
T Consensus 17 ~vif~~lg~tflywrgrrhhh 37 (40)
T 2l9u_A 17 VVIFMMLGGTFLYWRGRRHHH 37 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhCceeEEEccccccc
Confidence 345556666777887665443
No 4
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=6.29 E-value=5.1e+02 Score=15.62 Aligned_cols=8 Identities=0% Similarity=0.127 Sum_probs=4.2
Q ss_pred hhhhcCCC
Q 024445 35 LDNYRLHS 42 (267)
Q Consensus 35 ~~kykiq~ 42 (267)
+++.|+|.
T Consensus 34 ~RRRr~~~ 41 (44)
T 2l2t_A 34 VRRKSIKK 41 (44)
T ss_dssp HHTTCSSC
T ss_pred hhhhhhhh
Confidence 34556554
No 5
>2kt5_B ICP27; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Human herpesvirus 1}
Probab=6.16 E-value=4.7e+02 Score=15.30 Aligned_cols=23 Identities=26% Similarity=0.508 Sum_probs=15.4
Q ss_pred chhhhhhcCCCCCCCCCCCCCCCc
Q 024445 227 FVMWDRILGTYMPYSLEKRPDGGF 250 (267)
Q Consensus 227 ~~~wD~lfGT~~~~~~~~~~~~g~ 250 (267)
.++|-|| |+.+.-...++++++.
T Consensus 4 ~~VWsrL-G~RR~~s~~E~~~Gkv 26 (40)
T 2kt5_B 4 GSVWSRL-GARRPSCSPERHGGKV 26 (40)
T ss_dssp CCCCCCC-SSCCCCCCCCCCCCCS
T ss_pred ccHHHHh-cccCcCCCcCCCCCce
Confidence 5678887 7777665666766543
No 6
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=5.61 E-value=5.6e+02 Score=15.38 Aligned_cols=15 Identities=13% Similarity=0.091 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHH
Q 024445 11 GTFVPILVYWLYSGL 25 (267)
Q Consensus 11 ~~~~~~~~y~~~~~~ 25 (267)
++++.++...+..+.
T Consensus 16 gVVgGv~~~~ii~~~ 30 (44)
T 2ks1_B 16 GMVGALLLLLVVALG 30 (44)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred ehhHHHHHHHHHHHH
Confidence 444445444444443
No 7
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=5.38 E-value=2.8e+02 Score=16.19 Aligned_cols=15 Identities=27% Similarity=0.286 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHH
Q 024445 150 EGLLNDTIGGALSFL 164 (267)
Q Consensus 150 E~ll~~~~~~~l~~~ 164 (267)
|.++.+.+.+.+|.-
T Consensus 3 E~lL~GIVlGlipvt 17 (37)
T 1q90_G 3 EPLLCGIVLGLVPVT 17 (37)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred chhhhhHHHhhHHHH
Confidence 555555444444443
No 8
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=5.29 E-value=1.8e+02 Score=19.92 Aligned_cols=17 Identities=24% Similarity=0.159 Sum_probs=3.2
Q ss_pred chHHhhhhccCCCCcccCC
Q 024445 206 TAYHDIHHQLYGSKYNFAQ 224 (267)
Q Consensus 206 ~~~H~~HH~~~~~~~Nyg~ 224 (267)
..+|.-||..++ .|++.
T Consensus 3 ~~~~~~~~~~~~--~~~~~ 19 (88)
T 3t76_A 3 SSHHHHHHSSGR--ENLYF 19 (88)
T ss_dssp -----------C--CCCSC
T ss_pred ccccccccCCCc--cchhh
Confidence 456777887764 36664
No 9
>1vf5_G Protein PET G; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.26.1 PDB: 2d2c_G* 2e74_G* 2e75_G* 2e76_G* 2zt9_G*
Probab=4.16 E-value=2.8e+02 Score=16.22 Aligned_cols=15 Identities=27% Similarity=0.332 Sum_probs=3.3
Q ss_pred HHHHHHHHHHHHHHH
Q 024445 149 IEGLLNDTIGGALSF 163 (267)
Q Consensus 149 ~E~ll~~~~~~~l~~ 163 (267)
+|.++.+.+...+|.
T Consensus 2 vEplL~GIVlGlipv 16 (37)
T 1vf5_G 2 VEPLLDGLVLGLVFA 16 (37)
T ss_dssp -------CHHHHHHH
T ss_pred CchhhhhHHHhhHHH
Confidence 355555444334443
No 10
>2jyl_A Capsid protein P24 (Ca); HIV-1, carboxy-terminal, dimerization domain, CTD, 3D- NMR, capsid protein (Ca), double mutant; NMR {Human immunodeficiency virus 1} PDB: 2k1c_A* 2l6e_A*
Probab=3.82 E-value=1.7e+02 Score=21.32 Aligned_cols=32 Identities=19% Similarity=0.048 Sum_probs=6.2
Q ss_pred chHHhhhhccCCCCcccCCCCchhhhhhcCCCCC
Q 024445 206 TAYHDIHHQLYGSKYNFAQPFFVMWDRILGTYMP 239 (267)
Q Consensus 206 ~~~H~~HH~~~~~~~Nyg~~~~~~wD~lfGT~~~ 239 (267)
..+|.-||+.+-...-|. + ..+||.-=|...+
T Consensus 3 ~~~~~~~~~~~~~~~~~s-p-~si~~IkQGpKEP 34 (105)
T 2jyl_A 3 SSHHHHHHSSGLVPRGSH-M-TSILDIRQGPKEP 34 (105)
T ss_dssp ---------------------CCGGGCCCCSSSC
T ss_pred cccccccccCcceeeeec-C-cchhhhhcCCCCc
Confidence 456666776543222333 2 3555554444433
Done!