Query 024445
Match_columns 267
No_of_seqs 242 out of 1462
Neff 7.6
Searched_HMMs 13730
Date Mon Mar 25 08:21:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024445.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024445hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v9sa1 c.61.1.1 (A:1-208) Ura 4.6 98 0.0071 23.3 0.6 7 231-237 202-208 (208)
2 d1q90g_ f.23.26.1 (G:) PetG su 4.6 2.1E+02 0.015 14.4 1.7 14 150-163 3-16 (30)
3 d1o5oa_ c.61.1.1 (A:) Uracil P 4.5 1E+02 0.0073 23.3 0.6 8 230-237 203-210 (210)
4 d1i5ea_ c.61.1.1 (A:) Uracil P 4.5 1E+02 0.0073 23.3 0.6 8 230-237 201-208 (208)
5 d1bd3a_ c.61.1.1 (A:) Uracil P 4.2 1E+02 0.0075 23.5 0.4 6 231-236 218-223 (224)
6 d1kf6d_ f.21.2.2 (D:) Fumarate 3.6 1.1E+02 0.0084 20.9 0.2 10 124-133 76-85 (119)
7 d1puza_ a.218.1.1 (A:) Hypothe 2.7 2.7E+02 0.02 17.2 1.4 15 227-241 55-69 (82)
8 d1ppjd2 f.23.11.1 (D:196-241) 2.4 5.7E+02 0.041 14.0 3.6 19 98-116 11-29 (46)
9 d2epra1 g.37.1.1 (A:350-384) P 2.2 4E+02 0.029 13.7 1.3 12 129-140 24-35 (35)
10 d1ijva_ g.9.1.1 (A:) Beta-defe 2.1 1E+02 0.0074 16.2 -1.2 25 217-243 9-33 (36)
No 1
>d1v9sa1 c.61.1.1 (A:1-208) Uracil PRTase, Upp {Thermus thermophilus [TaxId: 274]}
Probab=4.56 E-value=98 Score=23.26 Aligned_cols=7 Identities=71% Similarity=0.971 Sum_probs=6.3
Q ss_pred hhhcCCC
Q 024445 231 DRILGTY 237 (267)
Q Consensus 231 D~lfGT~ 237 (267)
||.|||.
T Consensus 202 DR~fgT~ 208 (208)
T d1v9sa1 202 DRIYGTK 208 (208)
T ss_dssp HHHHTCC
T ss_pred HhccCCC
Confidence 9999994
No 2
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.55 E-value=2.1e+02 Score=14.40 Aligned_cols=14 Identities=29% Similarity=0.337 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHH
Q 024445 150 EGLLNDTIGGALSF 163 (267)
Q Consensus 150 E~ll~~~~~~~l~~ 163 (267)
|.++.+.+.+.+|.
T Consensus 3 E~ll~GivlGlipi 16 (30)
T d1q90g_ 3 EPLLCGIVLGLVPV 16 (30)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred hHHHHhHHHhhHHH
Confidence 45555444334443
No 3
>d1o5oa_ c.61.1.1 (A:) Uracil PRTase, Upp {Thermotoga maritima [TaxId: 2336]}
Probab=4.50 E-value=1e+02 Score=23.25 Aligned_cols=8 Identities=38% Similarity=0.401 Sum_probs=6.6
Q ss_pred hhhhcCCC
Q 024445 230 WDRILGTY 237 (267)
Q Consensus 230 wD~lfGT~ 237 (267)
=||+|||.
T Consensus 203 GDR~fgTk 210 (210)
T d1o5oa_ 203 GDRLFRTK 210 (210)
T ss_dssp HHHHHTCC
T ss_pred HHhhcCCC
Confidence 39999994
No 4
>d1i5ea_ c.61.1.1 (A:) Uracil PRTase, Upp {Bacillus caldolyticus [TaxId: 1394]}
Probab=4.47 E-value=1e+02 Score=23.26 Aligned_cols=8 Identities=50% Similarity=0.717 Sum_probs=6.7
Q ss_pred hhhhcCCC
Q 024445 230 WDRILGTY 237 (267)
Q Consensus 230 wD~lfGT~ 237 (267)
=||+|||.
T Consensus 201 GDR~fGT~ 208 (208)
T d1i5ea_ 201 GDRLFGTK 208 (208)
T ss_dssp HHHHHSCC
T ss_pred HHhccCCC
Confidence 39999994
No 5
>d1bd3a_ c.61.1.1 (A:) Uracil PRTase, Upp {Toxoplasma gondii [TaxId: 5811]}
Probab=4.17 E-value=1e+02 Score=23.47 Aligned_cols=6 Identities=67% Similarity=1.099 Sum_probs=5.8
Q ss_pred hhhcCC
Q 024445 231 DRILGT 236 (267)
Q Consensus 231 D~lfGT 236 (267)
||.|||
T Consensus 218 DR~fGT 223 (224)
T d1bd3a_ 218 DRYFGT 223 (224)
T ss_dssp HHHHTC
T ss_pred HhhcCC
Confidence 999999
No 6
>d1kf6d_ f.21.2.2 (D:) Fumarate reductase subunit FrdD {Escherichia coli [TaxId: 562]}
Probab=3.60 E-value=1.1e+02 Score=20.95 Aligned_cols=10 Identities=40% Similarity=0.929 Sum_probs=5.4
Q ss_pred hhhHHhhccC
Q 024445 124 LYRHIHSLHH 133 (267)
Q Consensus 124 Ly~~~H~~HH 133 (267)
+|.-.|++||
T Consensus 76 lWh~~HRihH 85 (119)
T d1kf6d_ 76 LWCGLHRMHH 85 (119)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4545555555
No 7
>d1puza_ a.218.1.1 (A:) Hypothetical protein NMA1147 {Neisseria meningitidis, mc58 [TaxId: 487]}
Probab=2.71 E-value=2.7e+02 Score=17.21 Aligned_cols=15 Identities=13% Similarity=-0.088 Sum_probs=10.9
Q ss_pred chhhhhhcCCCCCCC
Q 024445 227 FVMWDRILGTYMPYS 241 (267)
Q Consensus 227 ~~~wD~lfGT~~~~~ 241 (267)
-.+||++.|...++.
T Consensus 55 ~dL~~wl~g~~~~p~ 69 (82)
T d1puza_ 55 QELLALINGHSETDK 69 (82)
T ss_dssp HHHHHHHHTCSCCSC
T ss_pred HHHHHHHhCCCCCCc
Confidence 378899988876543
No 8
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.39 E-value=5.7e+02 Score=13.99 Aligned_cols=19 Identities=21% Similarity=0.322 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024445 98 RQFVIAMLVMDTWQYFMHR 116 (267)
Q Consensus 98 ~~~~~~~l~~D~~~Y~~HR 116 (267)
+.+++++.+.-...|++-|
T Consensus 11 ~Kv~~~l~~l~~l~yy~KR 29 (46)
T d1ppjd2 11 LKMLLMMGLLLPLVYAMKR 29 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555666655
No 9
>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.20 E-value=4e+02 Score=13.66 Aligned_cols=12 Identities=42% Similarity=0.672 Sum_probs=0.0
Q ss_pred hhccCCCCCCcc
Q 024445 129 HSLHHRLVVPYA 140 (267)
Q Consensus 129 H~~HH~~~~p~~ 140 (267)
|+.-|+-..|++
T Consensus 24 hklshs~ekpys 35 (35)
T d2epra1 24 HKLSHSGEKPYS 35 (35)
T ss_dssp HGGGSCSCCCCC
T ss_pred hhcccCCCCCCC
No 10
>d1ijva_ g.9.1.1 (A:) Beta-defensin, BD {Human (Homo sapiens), HBD1 [TaxId: 9606]}
Probab=2.12 E-value=1e+02 Score=16.23 Aligned_cols=25 Identities=16% Similarity=0.317 Sum_probs=0.0
Q ss_pred CCCcccCCCCchhhhhhcCCCCCCCCC
Q 024445 217 GSKYNFAQPFFVMWDRILGTYMPYSLE 243 (267)
Q Consensus 217 ~~~~Nyg~~~~~~wD~lfGT~~~~~~~ 243 (267)
.+..||+ + -++..|+=||.+..+.+
T Consensus 9 gg~c~~s-~-cpl~~ri~gtcy~gkak 33 (36)
T d1ijva_ 9 GGQCLYS-A-CPIFTKIQGTCYRGKAK 33 (36)
T ss_dssp TCEEESS-C-CCTTCCEEEEETTTTEE
T ss_pred Cceeccc-c-CcceEeeeeeEeccccc
Done!