Query 024446
Match_columns 267
No_of_seqs 234 out of 1312
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 04:40:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024446.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024446hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0667 Tas Predicted oxidored 100.0 4E-43 8.6E-48 320.9 19.1 178 81-265 3-190 (316)
2 KOG1575 Voltage-gated shaker-l 100.0 1.1E-41 2.3E-46 308.9 18.3 184 78-267 11-202 (336)
3 COG0656 ARA1 Aldo/keto reducta 100.0 6E-42 1.3E-46 304.9 15.3 162 88-263 11-174 (280)
4 TIGR01293 Kv_beta voltage-depe 100.0 1E-39 2.3E-44 298.6 17.5 174 81-262 1-186 (317)
5 PRK09912 L-glyceraldehyde 3-ph 100.0 1E-38 2.2E-43 295.4 19.8 177 81-265 15-206 (346)
6 PLN02587 L-galactose dehydroge 100.0 1.3E-38 2.9E-43 290.8 18.7 176 81-261 1-186 (314)
7 cd06660 Aldo_ket_red Aldo-keto 100.0 3.2E-38 6.9E-43 283.3 19.4 175 81-263 1-181 (285)
8 PRK14863 bifunctional regulato 100.0 2.7E-38 5.9E-43 286.3 16.2 165 88-264 2-174 (292)
9 KOG1577 Aldo/keto reductase fa 100.0 2.9E-38 6.2E-43 282.0 15.2 167 86-263 10-192 (300)
10 PRK10625 tas putative aldo-ket 100.0 9.6E-38 2.1E-42 288.8 18.3 174 81-263 3-216 (346)
11 PRK11172 dkgB 2,5-diketo-D-glu 100.0 8.8E-37 1.9E-41 273.0 18.2 157 90-261 2-161 (267)
12 PRK10376 putative oxidoreducta 100.0 2.5E-36 5.5E-41 273.1 19.8 172 80-262 8-195 (290)
13 PRK11565 dkgA 2,5-diketo-D-glu 100.0 6.5E-36 1.4E-40 268.6 16.5 163 82-262 7-170 (275)
14 PF00248 Aldo_ket_red: Aldo/ke 100.0 2.6E-35 5.6E-40 264.1 14.6 164 93-263 1-170 (283)
15 COG4989 Predicted oxidoreducta 100.0 2.4E-34 5.1E-39 248.4 11.1 178 81-266 3-193 (298)
16 KOG1576 Predicted oxidoreducta 100.0 6.3E-32 1.4E-36 235.1 14.1 173 81-260 24-210 (342)
17 COG1453 Predicted oxidoreducta 100.0 9.9E-32 2.1E-36 243.2 14.0 175 80-263 2-183 (391)
18 KOG3023 Glutamate-cysteine lig 97.2 0.00056 1.2E-08 59.8 4.7 48 209-256 155-203 (285)
19 PRK13796 GTPase YqeH; Provisio 81.5 34 0.00073 32.1 12.5 138 92-241 34-179 (365)
20 TIGR01228 hutU urocanate hydra 81.3 4.6 0.0001 39.3 6.6 120 116-254 108-257 (545)
21 PRK05414 urocanate hydratase; 81.1 4.9 0.00011 39.2 6.7 120 116-254 117-266 (556)
22 PF01175 Urocanase: Urocanase; 73.1 8.8 0.00019 37.5 6.0 122 115-255 106-257 (546)
23 PRK00164 moaA molybdenum cofac 72.6 76 0.0017 28.9 15.6 138 107-261 48-201 (331)
24 PF05690 ThiG: Thiazole biosyn 71.7 17 0.00036 32.2 6.9 74 171-245 71-144 (247)
25 PRK13361 molybdenum cofactor b 70.9 85 0.0018 28.7 16.1 136 107-260 44-196 (329)
26 COG1748 LYS9 Saccharopine dehy 69.8 29 0.00062 33.0 8.6 80 112-205 80-159 (389)
27 cd03174 DRE_TIM_metallolyase D 69.5 37 0.0008 29.6 8.9 82 172-257 15-97 (265)
28 PF03102 NeuB: NeuB family; I 69.4 34 0.00074 30.3 8.5 115 108-238 53-185 (241)
29 COG2987 HutU Urocanate hydrata 69.3 12 0.00027 36.0 6.0 57 187-251 205-261 (561)
30 cd04728 ThiG Thiazole synthase 68.6 87 0.0019 27.9 15.0 75 170-245 70-144 (248)
31 TIGR02666 moaA molybdenum cofa 64.3 1.1E+02 0.0025 27.8 16.3 138 107-261 42-196 (334)
32 cd04740 DHOD_1B_like Dihydroor 63.8 1.1E+02 0.0024 27.4 14.0 131 109-253 100-259 (296)
33 COG2022 ThiG Uncharacterized e 63.6 39 0.00084 30.0 7.5 75 170-245 77-151 (262)
34 cd06543 GH18_PF-ChiA-like PF-C 63.5 1.2E+02 0.0026 27.6 11.1 85 172-257 86-181 (294)
35 PRK13958 N-(5'-phosphoribosyl) 62.4 32 0.00068 29.6 6.8 67 185-255 16-83 (207)
36 PRK02399 hypothetical protein; 60.8 32 0.00069 32.9 7.0 76 181-263 200-294 (406)
37 COG3623 SgaU Putative L-xylulo 60.2 17 0.00037 32.2 4.7 64 84-147 63-136 (287)
38 PRK06256 biotin synthase; Vali 59.7 1.4E+02 0.003 27.2 11.3 118 108-243 91-223 (336)
39 PRK00208 thiG thiazole synthas 58.7 1.4E+02 0.0029 26.7 14.8 75 170-245 70-144 (250)
40 TIGR03822 AblA_like_2 lysine-2 56.7 1.6E+02 0.0035 27.0 13.2 123 108-243 119-252 (321)
41 PLN02363 phosphoribosylanthran 55.7 47 0.001 29.6 7.0 74 174-255 56-130 (256)
42 cd07948 DRE_TIM_HCS Saccharomy 55.1 1.5E+02 0.0033 26.3 12.0 24 109-132 20-43 (262)
43 PF07021 MetW: Methionine bios 53.0 1.5E+02 0.0032 25.4 9.5 126 115-262 5-142 (193)
44 PF00682 HMGL-like: HMGL-like 52.0 1.5E+02 0.0033 25.3 11.2 120 108-242 11-143 (237)
45 PRK05692 hydroxymethylglutaryl 51.3 82 0.0018 28.5 7.9 72 173-247 23-94 (287)
46 PRK01222 N-(5'-phosphoribosyl) 51.3 54 0.0012 28.2 6.5 66 186-255 19-85 (210)
47 PF14387 DUF4418: Domain of un 48.3 12 0.00026 29.7 1.8 25 3-27 31-56 (124)
48 PF13407 Peripla_BP_4: Peripla 47.8 97 0.0021 26.3 7.6 69 176-251 14-86 (257)
49 PRK07259 dihydroorotate dehydr 47.8 2.1E+02 0.0045 25.7 12.5 131 109-253 102-262 (301)
50 PRK09058 coproporphyrinogen II 45.8 2.8E+02 0.0061 26.6 11.8 62 172-235 226-304 (449)
51 TIGR03597 GTPase_YqeH ribosome 45.2 2.6E+02 0.0056 26.0 11.3 137 92-240 28-172 (360)
52 TIGR00126 deoC deoxyribose-pho 45.0 1.7E+02 0.0037 25.3 8.5 135 107-256 14-156 (211)
53 PRK05283 deoxyribose-phosphate 44.7 1.7E+02 0.0037 26.2 8.7 78 108-195 143-227 (257)
54 TIGR00126 deoC deoxyribose-pho 43.7 1.9E+02 0.0042 24.9 8.7 73 108-193 129-205 (211)
55 PRK08609 hypothetical protein; 43.4 3.5E+02 0.0076 27.0 11.7 107 113-232 351-467 (570)
56 COG4464 CapC Capsular polysacc 40.9 2E+02 0.0044 25.3 8.2 42 106-147 15-61 (254)
57 CHL00162 thiG thiamin biosynth 40.5 1.5E+02 0.0032 26.7 7.4 75 170-245 78-158 (267)
58 COG0135 TrpF Phosphoribosylant 40.0 95 0.0021 26.9 6.2 64 186-255 18-83 (208)
59 TIGR02811 formate_TAT formate 39.4 27 0.00059 24.5 2.2 11 20-30 13-23 (66)
60 PRK00730 rnpA ribonuclease P; 38.7 2.1E+02 0.0046 23.1 7.6 62 157-222 47-110 (138)
61 TIGR02090 LEU1_arch isopropylm 38.4 3E+02 0.0064 25.7 9.8 25 108-132 19-43 (363)
62 COG2089 SpsE Sialic acid synth 37.5 3.5E+02 0.0076 25.3 11.5 116 107-242 86-223 (347)
63 cd07948 DRE_TIM_HCS Saccharomy 37.0 3E+02 0.0065 24.4 9.9 70 172-249 18-88 (262)
64 PRK15108 biotin synthase; Prov 37.0 3E+02 0.0065 25.5 9.5 71 173-247 76-148 (345)
65 PF06792 UPF0261: Uncharacteri 36.9 1.3E+02 0.0029 28.7 7.1 76 181-263 199-293 (403)
66 PF06174 DUF987: Protein of un 35.9 13 0.00029 25.7 0.2 9 5-13 35-43 (66)
67 PRK11840 bifunctional sulfur c 34.8 3.8E+02 0.0082 24.9 10.5 75 170-245 144-218 (326)
68 PF07745 Glyco_hydro_53: Glyco 34.6 74 0.0016 29.6 4.9 113 120-253 12-131 (332)
69 PRK00507 deoxyribose-phosphate 34.3 3E+02 0.0064 23.9 8.5 120 107-243 18-143 (221)
70 PRK09613 thiH thiamine biosynt 34.1 4.6E+02 0.0099 25.6 10.5 82 172-256 114-202 (469)
71 cd00452 KDPG_aldolase KDPG and 33.5 2.8E+02 0.0061 23.0 13.2 110 109-253 14-123 (190)
72 COG3172 NadR Predicted ATPase/ 33.3 1.7E+02 0.0036 24.8 6.3 90 122-223 78-185 (187)
73 PRK06740 histidinol-phosphatas 33.1 3.9E+02 0.0085 24.6 10.1 52 180-232 156-223 (331)
74 PRK08392 hypothetical protein; 32.7 3.1E+02 0.0067 23.3 10.5 104 112-230 15-123 (215)
75 PRK05628 coproporphyrinogen II 32.5 4.1E+02 0.0089 24.6 11.5 28 172-200 171-198 (375)
76 PF00697 PRAI: N-(5'phosphorib 32.4 1.9E+02 0.0042 24.3 6.9 66 185-256 14-80 (197)
77 PRK04390 rnpA ribonuclease P; 32.1 2.4E+02 0.0053 21.9 8.0 64 157-222 45-110 (120)
78 cd07939 DRE_TIM_NifV Streptomy 32.0 3.5E+02 0.0076 23.7 10.3 68 172-247 16-84 (259)
79 COG0635 HemN Coproporphyrinoge 31.7 3.5E+02 0.0076 25.8 9.2 61 173-235 201-276 (416)
80 PF05049 IIGP: Interferon-indu 31.6 1.6E+02 0.0035 27.9 6.7 80 131-217 123-214 (376)
81 PRK03031 rnpA ribonuclease P; 31.6 2.5E+02 0.0054 21.8 7.7 64 157-222 48-114 (122)
82 PF08734 GYD: GYD domain; Int 31.2 2.2E+02 0.0047 21.0 7.4 67 176-242 19-90 (91)
83 PRK07535 methyltetrahydrofolat 31.1 3.8E+02 0.0082 23.8 9.4 108 115-234 80-200 (261)
84 TIGR00221 nagA N-acetylglucosa 30.1 4.7E+02 0.01 24.6 14.7 134 108-249 74-216 (380)
85 cd07937 DRE_TIM_PC_TC_5S Pyruv 29.5 4.1E+02 0.0088 23.6 14.3 122 108-242 18-155 (275)
86 PRK08195 4-hyroxy-2-oxovalerat 29.0 4.7E+02 0.01 24.2 14.4 24 108-131 22-45 (337)
87 PRK07945 hypothetical protein; 29.0 4.6E+02 0.01 24.1 10.7 107 111-230 111-227 (335)
88 COG1751 Uncharacterized conser 29.0 1.7E+02 0.0037 24.3 5.5 74 109-192 12-85 (186)
89 PF00072 Response_reg: Respons 28.6 2.2E+02 0.0048 20.3 6.6 55 187-245 37-93 (112)
90 PRK10508 hypothetical protein; 28.5 99 0.0021 28.6 4.8 22 173-194 286-307 (333)
91 TIGR03569 NeuB_NnaB N-acetylne 28.0 4.9E+02 0.011 24.1 12.5 130 108-257 73-226 (329)
92 cd00959 DeoC 2-deoxyribose-5-p 28.0 3.7E+02 0.008 22.6 8.1 69 108-191 128-202 (203)
93 PRK10200 putative racemase; Pr 27.6 4E+02 0.0086 23.1 8.2 69 173-242 14-93 (230)
94 COG1820 NagA N-acetylglucosami 27.4 2.7E+02 0.0059 26.4 7.4 37 212-248 175-211 (380)
95 PRK13803 bifunctional phosphor 27.4 2.2E+02 0.0048 28.7 7.3 67 187-255 20-87 (610)
96 cd03770 SR_TndX_transposase Se 27.2 1.1E+02 0.0024 24.1 4.3 44 179-222 54-97 (140)
97 PF01118 Semialdhyde_dh: Semia 27.1 98 0.0021 23.7 3.9 27 109-135 75-101 (121)
98 PRK10128 2-keto-3-deoxy-L-rham 26.9 2.5E+02 0.0055 25.2 6.9 67 190-258 166-243 (267)
99 COG0825 AccA Acetyl-CoA carbox 26.9 66 0.0014 29.4 3.1 37 110-146 136-178 (317)
100 TIGR02026 BchE magnesium-proto 26.3 5.8E+02 0.013 24.8 9.9 160 99-264 213-381 (497)
101 PRK13015 3-dehydroquinate dehy 26.3 3.6E+02 0.0079 22.0 7.3 81 172-261 25-107 (146)
102 PRK06294 coproporphyrinogen II 26.1 5.4E+02 0.012 23.9 10.7 63 172-236 166-244 (370)
103 PRK14461 ribosomal RNA large s 25.8 4.7E+02 0.01 24.8 8.7 65 197-261 232-320 (371)
104 PLN02746 hydroxymethylglutaryl 25.7 3.9E+02 0.0085 25.0 8.2 65 179-247 70-136 (347)
105 PRK09427 bifunctional indole-3 25.7 2.4E+02 0.0053 27.4 7.0 64 186-256 273-338 (454)
106 PRK07114 keto-hydroxyglutarate 25.6 4.4E+02 0.0096 22.9 8.0 36 109-144 25-60 (222)
107 TIGR02668 moaA_archaeal probab 25.5 4.8E+02 0.01 23.2 15.5 135 107-259 39-189 (302)
108 cd00466 DHQase_II Dehydroquina 25.4 3.3E+02 0.0072 22.1 6.6 81 172-261 23-105 (140)
109 PRK15408 autoinducer 2-binding 25.2 5.3E+02 0.011 23.5 10.0 84 159-252 25-112 (336)
110 PRK05718 keto-hydroxyglutarate 24.6 4.4E+02 0.0096 22.7 7.8 41 108-148 24-64 (212)
111 TIGR02660 nifV_homocitr homoci 24.5 5.2E+02 0.011 24.0 8.9 69 172-248 19-88 (365)
112 PRK05588 histidinol-phosphatas 24.4 4.7E+02 0.01 22.7 10.5 102 112-229 17-143 (255)
113 PRK00507 deoxyribose-phosphate 24.3 4.7E+02 0.01 22.7 7.9 27 108-134 133-159 (221)
114 cd00338 Ser_Recombinase Serine 24.1 1.5E+02 0.0032 22.7 4.5 52 179-231 51-102 (137)
115 PRK09413 IS2 repressor TnpA; R 24.0 1.1E+02 0.0024 23.7 3.6 44 108-151 13-56 (121)
116 COG0502 BioB Biotin synthase a 23.8 2.2E+02 0.0047 26.6 6.0 135 108-262 84-235 (335)
117 TIGR03278 methan_mark_10 putat 23.5 6E+02 0.013 24.2 9.1 83 172-258 53-139 (404)
118 PRK01313 rnpA ribonuclease P; 23.2 3.8E+02 0.0083 21.2 7.6 62 157-221 48-113 (129)
119 cd07943 DRE_TIM_HOA 4-hydroxy- 22.4 5.3E+02 0.012 22.6 14.3 24 108-131 19-42 (263)
120 TIGR03586 PseI pseudaminic aci 22.4 6.3E+02 0.014 23.4 12.0 128 108-257 74-225 (327)
121 COG0820 Predicted Fe-S-cluster 22.3 4E+02 0.0087 25.0 7.4 65 197-262 216-299 (349)
122 cd02810 DHOD_DHPD_FMN Dihydroo 22.2 5.5E+02 0.012 22.6 13.1 130 109-253 109-271 (289)
123 cd00405 PRAI Phosphoribosylant 21.9 1.8E+02 0.0038 24.5 4.8 43 194-241 74-116 (203)
124 PRK04820 rnpA ribonuclease P; 21.8 4.4E+02 0.0095 21.4 7.7 63 158-222 50-114 (145)
125 PRK05571 ribose-5-phosphate is 21.7 4.5E+02 0.0097 21.4 7.8 69 173-243 9-78 (148)
126 PRK12613 galactose-6-phosphate 21.6 4.4E+02 0.0095 21.3 7.4 65 173-243 9-74 (141)
127 cd00423 Pterin_binding Pterin 21.6 4.4E+02 0.0095 23.1 7.4 17 228-244 79-95 (258)
128 COG3830 ACT domain-containing 21.4 3.6E+02 0.0077 20.2 6.0 57 115-192 19-75 (90)
129 TIGR00035 asp_race aspartate r 21.2 5.3E+02 0.011 22.1 8.4 65 173-238 14-89 (229)
130 KOG0922 DEAH-box RNA helicase 21.1 97 0.0021 31.5 3.3 39 184-226 413-451 (674)
131 PRK05395 3-dehydroquinate dehy 20.8 4.2E+02 0.0091 21.7 6.4 83 172-263 25-109 (146)
132 KOG0544 FKBP-type peptidyl-pro 20.8 32 0.0007 26.1 -0.0 7 4-10 23-29 (108)
133 PRK09140 2-dehydro-3-deoxy-6-p 20.7 5.3E+02 0.012 21.9 12.4 107 108-246 19-125 (206)
134 cd02801 DUS_like_FMN Dihydrour 20.6 5.2E+02 0.011 21.7 11.4 132 109-253 65-212 (231)
135 PLN02951 Molybderin biosynthes 20.5 7.1E+02 0.015 23.3 15.3 136 108-261 90-242 (373)
136 TIGR01290 nifB nitrogenase cof 20.5 6.7E+02 0.015 24.2 8.9 84 172-259 59-145 (442)
137 COG2179 Predicted hydrolase of 20.4 3.8E+02 0.0082 22.6 6.2 57 185-244 22-82 (175)
138 TIGR01088 aroQ 3-dehydroquinat 20.2 4.8E+02 0.01 21.2 6.7 81 172-261 23-105 (141)
No 1
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=4e-43 Score=320.91 Aligned_cols=178 Identities=25% Similarity=0.347 Sum_probs=160.2
Q ss_pred eeecCCcccccCcceeccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEEcCCCCC--CcHHHHHHHHhhhhccCCCccee
Q 024446 81 TVSNGNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYG--PAEDLYGIFINRVRRERPPEFLD 158 (267)
Q Consensus 81 ~~~lG~tg~~Vs~LGlGt~~~g~~~~~~~~~~~~~~l~~A~d~Gin~fDTA~~YG--~sE~~lG~al~~~~~~r~~~~~~ 158 (267)
++++|++|++||+||||||.+|+.+...+++++.++|++|+|+||||||||++|| .||++||++|++.++ |+
T Consensus 3 ~r~lG~~gl~vs~lglG~~~~g~~~~~~~~~~a~~il~~A~d~Gin~~DTA~~Yg~g~sE~ilG~~l~~~~~-Rd----- 76 (316)
T COG0667 3 YRRLGRSGLKVSPLGLGTMTLGGDTDDEEEAEAIEILDAALDAGINFFDTADVYGDGRSEEILGEALKERGR-RD----- 76 (316)
T ss_pred ceecCCCCceecceeeeccccCCCCCchhhhHHHHHHHHHHHcCCCEEECccccCCCchHHHHHHHHhccCC-CC-----
Confidence 7889999999999999999998765566677888999999999999999999998 599999999998653 33
Q ss_pred eEEeecccCCCC--------CCCCHHHHHHHHHHHHHHcCCCceeEEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEEe
Q 024446 159 KVRGLTKWVPPP--------VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVAL 230 (267)
Q Consensus 159 ~v~i~tK~~~~~--------~~~~~~~i~~~l~~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~aL~~l~~~G~Ir~iGv 230 (267)
+++|+||+.... .+.++++|+++++.||+|||||||||||+||||+..+ .++++++|.+|+++||||+||+
T Consensus 77 ~vvIaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~~p-~~e~~~aL~~l~~~G~ir~iG~ 155 (316)
T COG0667 77 KVVIATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPETP-IEETLEALDELVREGKIRYIGV 155 (316)
T ss_pred eEEEEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCCC-HHHHHHHHHHHHHcCCeeEEEe
Confidence 888999974321 4579999999999999999999999999999999887 8899999999999999999999
Q ss_pred cCCCHHHHHHHHHcCCCEEEEeeeCCccCCCCccC
Q 024446 231 TNFDTERLRIILENGIPVVSNQVQLRIGKFIPFLN 265 (267)
Q Consensus 231 Sn~~~~~l~~~~~~g~~~~~~Q~~ysl~~r~~e~~ 265 (267)
||++.+++.++.+...+++++|.+||+++|+.|.+
T Consensus 156 S~~~~~~i~~a~~~~~~~~~~Q~~ynl~~R~~e~~ 190 (316)
T COG0667 156 SNYSAEQIAEALAVAAPIDSLQPEYNLLERDAEKE 190 (316)
T ss_pred cCCCHHHHHHHHHhcCCceeecccCccccccchhH
Confidence 99999999999876457999999999999988765
No 2
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=1.1e-41 Score=308.87 Aligned_cols=184 Identities=29% Similarity=0.392 Sum_probs=164.2
Q ss_pred ceeeeecCCcccccCcceeccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEEcCCCCC--CcHHHHHHHHhhhhccCCCc
Q 024446 78 QSITVSNGNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYG--PAEDLYGIFINRVRRERPPE 155 (267)
Q Consensus 78 ~~~~~~lG~tg~~Vs~LGlGt~~~g~~~~~~~~~~~~~~l~~A~d~Gin~fDTA~~YG--~sE~~lG~al~~~~~~r~~~ 155 (267)
...++++|++|++||++|||||.+...++..+++++.+++++|+|+|+||||||++|| .+|.++|++|++++..|+
T Consensus 11 ~~~~~~lg~~gl~Vs~lglG~m~~~~~~~~~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~~~~E~llg~~i~~~~~~R~-- 88 (336)
T KOG1575|consen 11 GMLRRKLGNSGLKVSPLGLGCMGWTTFGGQIDKEEAFELLDHAYEAGINFFDTAEVYGNGQSEELLGEFIKSRGWRRD-- 88 (336)
T ss_pred cceeeeccCCCceecceeecceeeeccccCCCHHHHHHHHHHHHHcCCCEEehhhhcCCcccHHHHHHHHHhcCCcCC--
Confidence 3459999999999999999997554333347999999999999999999999999998 599999999999776665
Q ss_pred ceeeEEeecccCCC-----CCCCCHHHHHHHHHHHHHHcCCCceeEEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEEe
Q 024446 156 FLDKVRGLTKWVPP-----PVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVAL 230 (267)
Q Consensus 156 ~~~~v~i~tK~~~~-----~~~~~~~~i~~~l~~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~aL~~l~~~G~Ir~iGv 230 (267)
+++|+||+... +...+...+...++.|+++||+|||||||+||||+..| .++++++|.+++++|||++||+
T Consensus 89 ---~vviaTK~~~~~~~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~~p-iee~m~aL~~lve~Gki~yiGl 164 (336)
T KOG1575|consen 89 ---KVVIATKFGFDYGGETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPMVP-IEETMRALTDLVEQGKIRYWGL 164 (336)
T ss_pred ---cEEEEEEEeccCCCcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCCCC-HHHHHHHHHHHHhcCceEEEEe
Confidence 78888886432 35678899999999999999999999999999999999 9999999999999999999999
Q ss_pred cCCCHHHHHHHHHcC-CCEEEEeeeCCccCCCCccCCC
Q 024446 231 TNFDTERLRIILENG-IPVVSNQVQLRIGKFIPFLNPL 267 (267)
Q Consensus 231 Sn~~~~~l~~~~~~g-~~~~~~Q~~ysl~~r~~e~~~l 267 (267)
|+++++++++++... +||.++|++||+++|++|++++
T Consensus 165 Se~sa~~I~~a~~~~~~p~~s~Q~eysl~~Rd~ee~~i 202 (336)
T KOG1575|consen 165 SEWSAEEIREAHAVAPIPIVAVQVEYSLLSRDKEERGI 202 (336)
T ss_pred ccCCHHHHHHHHHhcCCCceEeeeechhhhcchhhhhH
Confidence 999999999998863 6799999999999999998753
No 3
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=6e-42 Score=304.95 Aligned_cols=162 Identities=23% Similarity=0.310 Sum_probs=143.9
Q ss_pred ccccCcceeccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEEcCCCCCCcHHHHHHHHhhhhccCCCcceeeEEeecccC
Q 024446 88 SLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWV 167 (267)
Q Consensus 88 g~~Vs~LGlGt~~~g~~~~~~~~~~~~~~l~~A~d~Gin~fDTA~~YG~sE~~lG~al~~~~~~r~~~~~~~v~i~tK~~ 167 (267)
|.+||.||||||++++. +...+++.+|++.|+|+||||..|| +|+.+|+++++.+..| .++|++||+|
T Consensus 11 g~~iP~iGlGt~~~~~~------~~~~~av~~Al~~Gyr~IDTA~~Yg-nE~~VG~aI~~s~v~R-----eelFittKvw 78 (280)
T COG0656 11 GVEIPAIGLGTWQIGDD------EWAVRAVRAALELGYRLIDTAEIYG-NEEEVGEAIKESGVPR-----EELFITTKVW 78 (280)
T ss_pred CCcccCcceEeeecCCc------hhHHHHHHHHHHhCcceEecHhHhc-CHHHHHHHHHhcCCCH-----HHeEEEeecC
Confidence 36799999999999752 2388999999999999999999999 5888999999854333 3999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCceeEEEEecCCCC-CCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHc-C
Q 024446 168 PPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS-NPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-G 245 (267)
Q Consensus 168 ~~~~~~~~~~i~~~l~~SL~rLg~d~iDl~~lH~pd~~-~~~~~~~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~-g 245 (267)
+. +.+++.+.+++++||++||+||||||+||||.+. ...+.++|++||+++++||||+||||||+.++++++++. +
T Consensus 79 ~~--~~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~~~~~~~etw~alE~l~~~G~ir~IGVSNF~~~~L~~l~~~~~ 156 (280)
T COG0656 79 PS--DLGYDETLKALEASLKRLGLDYVDLYLIHWPVPNKYVVIEETWKALEELVDEGLIRAIGVSNFGVEHLEELLSLAK 156 (280)
T ss_pred Cc--cCCcchHHHHHHHHHHHhCCCceeEEEECCCCCccCccHHHHHHHHHHHHhcCCccEEEeeCCCHHHHHHHHHhcC
Confidence 76 6688999999999999999999999999999763 112679999999999999999999999999999999875 5
Q ss_pred CCEEEEeeeCCccCCCCc
Q 024446 246 IPVVSNQVQLRIGKFIPF 263 (267)
Q Consensus 246 ~~~~~~Q~~ysl~~r~~e 263 (267)
++|++||++|||+.+++|
T Consensus 157 ~~p~~NQIe~hp~~~q~e 174 (280)
T COG0656 157 VKPAVNQIEYHPYLRQPE 174 (280)
T ss_pred CCCceEEEEeccCCCcHH
Confidence 789999999999999887
No 4
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=1e-39 Score=298.55 Aligned_cols=174 Identities=18% Similarity=0.225 Sum_probs=149.5
Q ss_pred eeecCCcccccCcceeccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEEcCCCCC--CcHHHHHHHHhhhhccCCCccee
Q 024446 81 TVSNGNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYG--PAEDLYGIFINRVRRERPPEFLD 158 (267)
Q Consensus 81 ~~~lG~tg~~Vs~LGlGt~~~g~~~~~~~~~~~~~~l~~A~d~Gin~fDTA~~YG--~sE~~lG~al~~~~~~r~~~~~~ 158 (267)
++++|++|++||+||||||.+++ +..+++++.++++.|++.|||+||||++|| .||++||++|++.+..|+
T Consensus 1 ~r~lg~tg~~vs~lglGt~~~~g--~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~~~~R~----- 73 (317)
T TIGR01293 1 YRNLGKSGLRVSCLGLGTWVTFG--GQISDEMAEQLLTLAYENGINLFDTAEVYAAGKAEVVLGNILKKKGWRRS----- 73 (317)
T ss_pred CcccCCCCCeecceeecCCccCC--CCCCHHHHHHHHHHHHHcCCCeEECccccCCCccHHHHHHHHHhcCCCcc-----
Confidence 46799999999999999997432 146788999999999999999999999997 599999999985322233
Q ss_pred eEEeecccCCC-----CCCCCHHHHHHHHHHHHHHcCCCceeEEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEEecCC
Q 024446 159 KVRGLTKWVPP-----PVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNF 233 (267)
Q Consensus 159 ~v~i~tK~~~~-----~~~~~~~~i~~~l~~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~aL~~l~~~G~Ir~iGvSn~ 233 (267)
+++++||+... ..+.+++.+++++++||++||+||||+|++|||++..+ .+++|++|++|+++||||+||||||
T Consensus 74 ~~~iaTK~~~~~~~~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~~~-~~e~~~aL~~l~~~G~ir~iGvSn~ 152 (317)
T TIGR01293 74 SYVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPNTP-MEETVRAMTYVINQGMAMYWGTSRW 152 (317)
T ss_pred cEEEEeeeccCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCCCC-HHHHHHHHHHHHHcCCeeEEEecCC
Confidence 78999996321 13468999999999999999999999999999998766 8899999999999999999999999
Q ss_pred CHHHHHHHHH----cC-CCEEEEeeeCCccCCCC
Q 024446 234 DTERLRIILE----NG-IPVVSNQVQLRIGKFIP 262 (267)
Q Consensus 234 ~~~~l~~~~~----~g-~~~~~~Q~~ysl~~r~~ 262 (267)
+.++++++.. .+ ++|+++|++||+++|+.
T Consensus 153 ~~~~l~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~ 186 (317)
T TIGR01293 153 SSMEIMEAYSVARQFNLIPPICEQAEYHMFQREK 186 (317)
T ss_pred CHHHHHHHHHHHHHcCCCCcceeccccChHhcch
Confidence 9999887653 23 57899999999999985
No 5
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=1e-38 Score=295.39 Aligned_cols=177 Identities=23% Similarity=0.302 Sum_probs=149.7
Q ss_pred eeecCCcccccCcceeccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEEcCCCCCC----cHHHHHHHHhhhh-ccCCCc
Q 024446 81 TVSNGNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYGP----AEDLYGIFINRVR-RERPPE 155 (267)
Q Consensus 81 ~~~lG~tg~~Vs~LGlGt~~~g~~~~~~~~~~~~~~l~~A~d~Gin~fDTA~~YG~----sE~~lG~al~~~~-~~r~~~ 155 (267)
++++|+||++||+||||||+..+. ..+.+++.+++++|++.|||+||||+.||+ +|++||++|++.. ..|+
T Consensus 15 ~r~lg~tg~~vs~lglG~~~~~g~--~~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~sE~~lG~~l~~~~~~~Rd-- 90 (346)
T PRK09912 15 YRYCGKSGLRLPALSLGLWHNFGH--VNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAAYRD-- 90 (346)
T ss_pred eeecCCCCcccccccccCccccCC--CCCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCcHHHHHHHHHhcccCCCC--
Confidence 899999999999999999973221 235678899999999999999999999984 8999999997531 1233
Q ss_pred ceeeEEeecccC----CC--CCCCCHHHHHHHHHHHHHHcCCCceeEEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEE
Q 024446 156 FLDKVRGLTKWV----PP--PVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVA 229 (267)
Q Consensus 156 ~~~~v~i~tK~~----~~--~~~~~~~~i~~~l~~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~aL~~l~~~G~Ir~iG 229 (267)
+++|+||++ +. +...+++++++++++||+|||+||||+|++|||++..+ ++++|++|++|+++||||+||
T Consensus 91 ---~~~I~TK~g~~~~~~~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~-~~e~~~al~~l~~~GkIr~iG 166 (346)
T PRK09912 91 ---ELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTP-MEETASALAHAVQSGKALYVG 166 (346)
T ss_pred ---eEEEEEEecccCCCCcCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCC-HHHHHHHHHHHHHcCCeeEEE
Confidence 788999963 21 12467999999999999999999999999999988766 889999999999999999999
Q ss_pred ecCCCHHHHHHHHH----cCCCEEEEeeeCCccCCCCccC
Q 024446 230 LTNFDTERLRIILE----NGIPVVSNQVQLRIGKFIPFLN 265 (267)
Q Consensus 230 vSn~~~~~l~~~~~----~g~~~~~~Q~~ysl~~r~~e~~ 265 (267)
||||++++++++.+ .++++.++|++||+++|..+.+
T Consensus 167 vSn~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~ 206 (346)
T PRK09912 167 ISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKS 206 (346)
T ss_pred ecCCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchh
Confidence 99999999876554 2568899999999999976643
No 6
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=1.3e-38 Score=290.83 Aligned_cols=176 Identities=20% Similarity=0.301 Sum_probs=150.5
Q ss_pred eeecCCcccccCcceeccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEEcCCCCCC--cHHHHHHHHhhhhccCCCccee
Q 024446 81 TVSNGNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYGP--AEDLYGIFINRVRRERPPEFLD 158 (267)
Q Consensus 81 ~~~lG~tg~~Vs~LGlGt~~~g~~~~~~~~~~~~~~l~~A~d~Gin~fDTA~~YG~--sE~~lG~al~~~~~~r~~~~~~ 158 (267)
||+||+||++||.||||||++|+.|+..+++++.+++++|++.|||+||||+.||. +|+++|++|++.+.+|.
T Consensus 1 ~r~lg~t~~~vs~lglG~~~~g~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~~~~R~----- 75 (314)
T PLN02587 1 LRELGSTGLKVSSVGFGASPLGSVFGPVSEEDAIASVREAFRLGINFFDTSPYYGGTLSEKVLGKALKALGIPRE----- 75 (314)
T ss_pred CCcCCCCCCcccCcccccccccCCCCCCCHHHHHHHHHHHHHcCCCEEECcCccCCCchHHHHHHHHHhCCCCcc-----
Confidence 57899999999999999999987787788999999999999999999999999976 99999999987533333
Q ss_pred eEEeecccCCC--CCCCCHHHHHHHHHHHHHHcCCCceeEEEEecCCCCCC--CHHHHHHHHHHHHHcCCccEEEecCCC
Q 024446 159 KVRGLTKWVPP--PVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNP--GYLDALNHLTDLKEEGKIKTVALTNFD 234 (267)
Q Consensus 159 ~v~i~tK~~~~--~~~~~~~~i~~~l~~SL~rLg~d~iDl~~lH~pd~~~~--~~~~~~~aL~~l~~~G~Ir~iGvSn~~ 234 (267)
+++|+||+++. ..+++++.+++++++||++||+||||+|++|||+...+ ..+++|++|++|+++||||+||+|||+
T Consensus 76 ~v~I~TK~~~~~~~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~ 155 (314)
T PLN02587 76 KYVVSTKCGRYGEGFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSLDQIVNETIPALQKLKESGKVRFIGITGLP 155 (314)
T ss_pred eEEEEeccccCCCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcchhhhHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 89999998642 23578999999999999999999999999999975321 256899999999999999999999999
Q ss_pred HHHHHHHHHc---C-CCEEEEeeeCCccCCC
Q 024446 235 TERLRIILEN---G-IPVVSNQVQLRIGKFI 261 (267)
Q Consensus 235 ~~~l~~~~~~---g-~~~~~~Q~~ysl~~r~ 261 (267)
+++++.+.+. + +.+..+|+.||+.++.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 186 (314)
T PLN02587 156 LAIFTYVLDRVPPGTVDVILSYCHYSLNDSS 186 (314)
T ss_pred HHHHHHHHHhhhcCCCCeEEeccccCcchhh
Confidence 9988776652 2 3455678999998764
No 7
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=3.2e-38 Score=283.26 Aligned_cols=175 Identities=30% Similarity=0.511 Sum_probs=156.6
Q ss_pred eeecCCcccccCcceeccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEEcCCCCCC--cHHHHHHHHhhhhccCCCccee
Q 024446 81 TVSNGNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYGP--AEDLYGIFINRVRRERPPEFLD 158 (267)
Q Consensus 81 ~~~lG~tg~~Vs~LGlGt~~~g~~~~~~~~~~~~~~l~~A~d~Gin~fDTA~~YG~--sE~~lG~al~~~~~~r~~~~~~ 158 (267)
++++|+||++||+||||||.++..| .+.+++.++++.|++.|||+||||+.||+ +|+.+|++|++.+ .|+
T Consensus 1 ~r~lg~tg~~vs~lg~G~~~~~~~~--~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~~~-~R~----- 72 (285)
T cd06660 1 YRTLGKTGLKVSRLGLGTWQLGGGY--VDEEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEALKERG-PRE----- 72 (285)
T ss_pred CcccCCCCceecCcceeccccCCCC--CCHHHHHHHHHHHHHcCCCeEECccccCCCCCHHHHHHHHhccC-CcC-----
Confidence 4679999999999999999987655 67889999999999999999999999987 9999999998765 233
Q ss_pred eEEeecccCCCC---CCCCHHHHHHHHHHHHHHcCCCceeEEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCH
Q 024446 159 KVRGLTKWVPPP---VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDT 235 (267)
Q Consensus 159 ~v~i~tK~~~~~---~~~~~~~i~~~l~~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~aL~~l~~~G~Ir~iGvSn~~~ 235 (267)
+++++||+++.. .+.+++.+++++++||++||+||||+|++|||+.......++|++|++++++|+||+||||||++
T Consensus 73 ~~~i~tK~~~~~~~~~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~ 152 (285)
T cd06660 73 EVFIATKVGPRPGDGRDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDTPDIEETLRALEELVKEGKIRAIGVSNFSA 152 (285)
T ss_pred cEEEEeeecCCCCCCCCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCCCHHHHHHHHHHHHHcCCccEEEeeCCCH
Confidence 889999987543 23789999999999999999999999999999876555789999999999999999999999999
Q ss_pred HHHHHHHHc-CCCEEEEeeeCCccCCCCc
Q 024446 236 ERLRIILEN-GIPVVSNQVQLRIGKFIPF 263 (267)
Q Consensus 236 ~~l~~~~~~-g~~~~~~Q~~ysl~~r~~e 263 (267)
+.+.++.+. ..+|+++|++||++++..+
T Consensus 153 ~~l~~~~~~~~~~~~~~q~~~n~~~~~~~ 181 (285)
T cd06660 153 EQLEEALAAAGVPPAVNQVEYNLLDRQAE 181 (285)
T ss_pred HHHHHHHHhhCCCceEEecccCcccCchH
Confidence 999998876 3689999999999999876
No 8
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=2.7e-38 Score=286.29 Aligned_cols=165 Identities=20% Similarity=0.147 Sum_probs=142.2
Q ss_pred ccccCcceeccccCCCC-------CCCCCHHHHHHHHHHHHHcCCCEEEcCCCCCCcHHHHHHHHhhhhccCCCcceeeE
Q 024446 88 SLEICRVLNGMWQTSGG-------WGRIDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKV 160 (267)
Q Consensus 88 g~~Vs~LGlGt~~~g~~-------~~~~~~~~~~~~l~~A~d~Gin~fDTA~~YG~sE~~lG~al~~~~~~r~~~~~~~v 160 (267)
+++||+||||||++|+. |+.++++++.++++.|++.||||||||+.||.||.++|++|++. .+ .++
T Consensus 2 ~~~vs~iglGt~~~g~~~~~~~~~~~~~~~~ea~~~l~~A~~~Gin~~DTA~~YG~SE~~lG~al~~~--~~-----~~~ 74 (292)
T PRK14863 2 SSPVSKLGLAAAQFGLDPGSSSAPRGRTPEAEARDILNIAARAGLSVLDASGLFGRAETVLGQLIPRP--VP-----FRV 74 (292)
T ss_pred CCcceeeeeeeeccCCCcccccCCCCCCCHHHHHHHHHHHHHcCCCEEecchhhhhHHHHHhhhhccC--Cc-----eEe
Confidence 47899999999999853 57789999999999999999999999999999999999999631 11 156
Q ss_pred EeecccCCCCCCCCHHHHHHHHHHHHHHcCCCceeEEEEecCCCC-CCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHH
Q 024446 161 RGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS-NPGYLDALNHLTDLKEEGKIKTVALTNFDTERLR 239 (267)
Q Consensus 161 ~i~tK~~~~~~~~~~~~i~~~l~~SL~rLg~d~iDl~~lH~pd~~-~~~~~~~~~aL~~l~~~G~Ir~iGvSn~~~~~l~ 239 (267)
+++||.. ..+++.+++++++||+|||+||||+|++|||++. .+..+++|++|++|+++||||+||||||+++++.
T Consensus 75 ~i~tk~~----~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~~~ 150 (292)
T PRK14863 75 TLSTVRA----DRGPDFVEAEARASLRRMGVERADAILVHSPTELFGPHGAALWERLQALKDQGLFAKIGVSAHASDDPV 150 (292)
T ss_pred ecccccc----cccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhcCcchHHHHHHHHHHHHcCCcceEeeeccCHHHHH
Confidence 7778742 3578999999999999999999999999999753 2323678999999999999999999999999988
Q ss_pred HHHHcCCCEEEEeeeCCccCCCCcc
Q 024446 240 IILENGIPVVSNQVQLRIGKFIPFL 264 (267)
Q Consensus 240 ~~~~~g~~~~~~Q~~ysl~~r~~e~ 264 (267)
++.+. .+|+++|++||+++|++|.
T Consensus 151 ~~~~~-~~~~~~Q~~~n~l~~~~~~ 174 (292)
T PRK14863 151 GVARR-FKPDILQAPASLLDQRLLA 174 (292)
T ss_pred HHHhc-CCCCEEEecCCcccccccc
Confidence 87654 5899999999999998753
No 9
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=2.9e-38 Score=281.95 Aligned_cols=167 Identities=20% Similarity=0.301 Sum_probs=145.8
Q ss_pred CcccccCcceeccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEEcCCCCCCcHHHHHHHHhhhhccCCCcceeeEEeecc
Q 024446 86 NDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTK 165 (267)
Q Consensus 86 ~tg~~Vs~LGlGt~~~g~~~~~~~~~~~~~~l~~A~d~Gin~fDTA~~YG~sE~~lG~al~~~~~~r~~~~~~~v~i~tK 165 (267)
++|.+||.||||||+. ++++..++++.|++.|++|||||..||+ |+-+|++|++...+.. ..|.++|++||
T Consensus 10 n~G~~mP~iGlGTw~~-------~~~~~~~aV~~Al~~GYRHIDtA~~Y~N-E~evG~aik~~i~~~~-v~RediFiTSK 80 (300)
T KOG1577|consen 10 NNGFKMPIIGLGTWQS-------PPGQVAEAVKAAIKAGYRHIDTAHVYGN-EKEVGEAIKELLAEGG-VKREDIFITSK 80 (300)
T ss_pred cCCCccceeeeEeccc-------ChhhHHHHHHHHHHhCcceeechhhhCC-hHHHHHHHHHHhhhCC-cchhhheeeec
Confidence 4458999999999984 3578999999999999999999999998 4458999997654443 55679999999
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHcCCCceeEEEEecCCCC---------------CCCHHHHHHHHHHHHHcCCccEEEe
Q 024446 166 WVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS---------------NPGYLDALNHLTDLKEEGKIKTVAL 230 (267)
Q Consensus 166 ~~~~~~~~~~~~i~~~l~~SL~rLg~d~iDl~~lH~pd~~---------------~~~~~~~~~aL~~l~~~G~Ir~iGv 230 (267)
.|+. ...++.++.++++||++||+||+|||++|||-.. ..++.++|++||+++++|++|+|||
T Consensus 81 lw~~--~~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~~~~~~~~~~~~~~~~~~~~tW~amE~~~~~Gl~rsIGV 158 (300)
T KOG1577|consen 81 LWPT--DHAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKDSFPKDENGKVNYDDVDRIETWKAMEKLVDEGLVRSIGV 158 (300)
T ss_pred cCcc--ccChhhHHHHHHHHHHHhChhhhheeeEecccccCCCCCcccccccccccchHHHHHHHHHHHHHcCCceEeee
Confidence 9976 5689999999999999999999999999998543 1237789999999999999999999
Q ss_pred cCCCHHHHHHHHHc-CCCEEEEeeeCCccCCCCc
Q 024446 231 TNFDTERLRIILEN-GIPVVSNQVQLRIGKFIPF 263 (267)
Q Consensus 231 Sn~~~~~l~~~~~~-g~~~~~~Q~~ysl~~r~~e 263 (267)
|||+..++++++.. .++|.+||+|+||+-++.+
T Consensus 159 SNF~~~~le~ll~~~ki~P~vnQvE~HP~~~Q~~ 192 (300)
T KOG1577|consen 159 SNFNIKQLEELLNLAKIKPAVNQVECHPYLQQKK 192 (300)
T ss_pred ecCCHHHHHHHHhcCCCCCccceeeccCCcChHH
Confidence 99999999999986 5899999999999877653
No 10
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=9.6e-38 Score=288.79 Aligned_cols=174 Identities=20% Similarity=0.248 Sum_probs=147.7
Q ss_pred eeecCCcccccCcceeccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEEcCCCCC---------CcHHHHHHHHhhhhcc
Q 024446 81 TVSNGNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYG---------PAEDLYGIFINRVRRE 151 (267)
Q Consensus 81 ~~~lG~tg~~Vs~LGlGt~~~g~~~~~~~~~~~~~~l~~A~d~Gin~fDTA~~YG---------~sE~~lG~al~~~~~~ 151 (267)
++++|+||++||+||||||++|. ..+++++.++++.|++.||||||||+.|| .+|+++|++|+..+ .
T Consensus 3 ~r~lg~t~~~vs~iglGt~~~g~---~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG~aL~~~~-~ 78 (346)
T PRK10625 3 YHRIPHSSLEVSTLGLGTMTFGE---QNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYIGNWLAKRG-S 78 (346)
T ss_pred ceecCCCCCccccEeEeccccCC---CCCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCchHHHHHHHHhhcC-C
Confidence 68899999999999999999874 34678999999999999999999999995 49999999997532 2
Q ss_pred CCCcceeeEEeecccCCCC----------CCCCHHHHHHHHHHHHHHcCCCceeEEEEecCCCC----------------
Q 024446 152 RPPEFLDKVRGLTKWVPPP----------VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS---------------- 205 (267)
Q Consensus 152 r~~~~~~~v~i~tK~~~~~----------~~~~~~~i~~~l~~SL~rLg~d~iDl~~lH~pd~~---------------- 205 (267)
|+ +++|+||++... ...+++.+++++++||++||+||||||++|||++.
T Consensus 79 R~-----~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~ 153 (346)
T PRK10625 79 RE-----KLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAP 153 (346)
T ss_pred cc-----eEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCcccccccccccccccccC
Confidence 33 889999974211 14689999999999999999999999999999752
Q ss_pred CCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHH----cCC-CEEEEeeeCCccCCCCc
Q 024446 206 NPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILE----NGI-PVVSNQVQLRIGKFIPF 263 (267)
Q Consensus 206 ~~~~~~~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~----~g~-~~~~~Q~~ysl~~r~~e 263 (267)
...++++|++|++|+++||||+||||||+.+++.++.. .++ .+.++|++||+++|+.+
T Consensus 154 ~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~ 216 (346)
T PRK10625 154 AVSLLETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFE 216 (346)
T ss_pred CCCHHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccch
Confidence 11278999999999999999999999999999877653 233 48899999999998765
No 11
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=8.8e-37 Score=273.02 Aligned_cols=157 Identities=17% Similarity=0.230 Sum_probs=136.5
Q ss_pred ccCcceeccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEEcCCCCCCcHHHHHHHHhhhhccCCCcceeeEEeecccCCC
Q 024446 90 EICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPP 169 (267)
Q Consensus 90 ~Vs~LGlGt~~~g~~~~~~~~~~~~~~l~~A~d~Gin~fDTA~~YG~sE~~lG~al~~~~~~r~~~~~~~v~i~tK~~~~ 169 (267)
+||.||||||++++ +++.++++.|++.||||||||+.|| +|+.+|++|++.+..|+ +++|+||+++.
T Consensus 2 ~vs~lglGt~~~~~-------~~~~~~i~~A~~~Gi~~~DTA~~Yg-~E~~lG~al~~~~~~R~-----~v~i~TK~~~~ 68 (267)
T PRK11172 2 SIPAFGLGTFRLKD-------QVVIDSVKTALELGYRAIDTAQIYD-NEAAVGQAIAESGVPRD-----ELFITTKIWID 68 (267)
T ss_pred CCCCEeeEccccCh-------HHHHHHHHHHHHcCCCEEEccchhC-CHHHHHHHHHHcCCChh-----HeEEEEEeCCC
Confidence 69999999998753 6799999999999999999999999 59999999986432233 89999998643
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCceeEEEEecCCCCC-CCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHc-CC-
Q 024446 170 PVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSN-PGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GI- 246 (267)
Q Consensus 170 ~~~~~~~~i~~~l~~SL~rLg~d~iDl~~lH~pd~~~-~~~~~~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~-g~- 246 (267)
..+++.+++++++||+|||+||||+|++|||++.. ....++|++|++++++||||+||||||+.++++++.+. +.
T Consensus 69 --~~~~~~~~~~~~~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~ 146 (267)
T PRK11172 69 --NLAKDKLIPSLKESLQKLRTDYVDLTLIHWPSPNDEVSVEEFMQALLEAKKQGLTREIGISNFTIALMKQAIAAVGAE 146 (267)
T ss_pred --CCCHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEccCCHHHHHHHHHhcCCC
Confidence 56899999999999999999999999999997641 13688999999999999999999999999999998874 33
Q ss_pred CEEEEeeeCCccCCC
Q 024446 247 PVVSNQVQLRIGKFI 261 (267)
Q Consensus 247 ~~~~~Q~~ysl~~r~ 261 (267)
+|+++|++||+++++
T Consensus 147 ~~~~~Q~~~~~~~~~ 161 (267)
T PRK11172 147 NIATNQIELSPYLQN 161 (267)
T ss_pred CCeEEeeecCCCCCc
Confidence 689999999999875
No 12
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=2.5e-36 Score=273.06 Aligned_cols=172 Identities=19% Similarity=0.271 Sum_probs=144.7
Q ss_pred eeeecCCcccccCcceeccccCCC--CCCC-CCHHHHHHHHHHHHHcCCCEEEcCCCCCC--cHHHHHHHHhhhhccCCC
Q 024446 80 ITVSNGNDSLEICRVLNGMWQTSG--GWGR-IDRDDAVDAMLRYADAGLTTFDMADHYGP--AEDLYGIFINRVRRERPP 154 (267)
Q Consensus 80 ~~~~lG~tg~~Vs~LGlGt~~~g~--~~~~-~~~~~~~~~l~~A~d~Gin~fDTA~~YG~--sE~~lG~al~~~~~~r~~ 154 (267)
-++.++ |++||+||||||++|+ .|+. .+++++.++++.|++.||||||||+.||+ +|+++|++++.. | +
T Consensus 8 ~~~~l~--g~~vs~iglG~~~lg~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~~~sE~~lg~~l~~~-R--~- 81 (290)
T PRK10376 8 GTFTLG--GRSVNRLGYGAMQLAGPGVFGPPKDRDAAIAVLREAVALGVNHIDTSDFYGPHVTNQLIREALHPY-P--D- 81 (290)
T ss_pred CceecC--CeeecccceeccccCCCCcCCCCCCHHHHHHHHHHHHHcCCCeEEChhhcCCCcHHHHHHHHHhcC-C--C-
Confidence 345565 7999999999999975 3664 47888999999999999999999999986 789999999632 2 2
Q ss_pred cceeeEEeecccCC-------CCCCCCHHHHHHHHHHHHHHcCCCceeEEEEecCCC----CCCCHHHHHHHHHHHHHcC
Q 024446 155 EFLDKVRGLTKWVP-------PPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDY----SNPGYLDALNHLTDLKEEG 223 (267)
Q Consensus 155 ~~~~~v~i~tK~~~-------~~~~~~~~~i~~~l~~SL~rLg~d~iDl~~lH~pd~----~~~~~~~~~~aL~~l~~~G 223 (267)
+++++||+.. .....+++.+++++++||+|||+||||+|++||++. .....+++|++|++|+++|
T Consensus 82 ----~~~i~TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~p~~~~~~~~~~~l~~l~~~G 157 (290)
T PRK10376 82 ----DLTIVTKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHGPAEGSIEEPLTVLAELQRQG 157 (290)
T ss_pred ----eEEEEeeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCCCCCCHHHHHHHHHHHHHCC
Confidence 7889999742 123578999999999999999999999999998521 1123788999999999999
Q ss_pred CccEEEecCCCHHHHHHHHHcCCCEEEEeeeCCccCCCC
Q 024446 224 KIKTVALTNFDTERLRIILENGIPVVSNQVQLRIGKFIP 262 (267)
Q Consensus 224 ~Ir~iGvSn~~~~~l~~~~~~g~~~~~~Q~~ysl~~r~~ 262 (267)
|||+||||||++++++++.+. .+++++|++||+++|..
T Consensus 158 kir~iGvSn~~~~~l~~~~~~-~~~~~~q~~~~~~~~~~ 195 (290)
T PRK10376 158 LVRHIGLSNVTPTQVAEARKI-AEIVCVQNHYNLAHRAD 195 (290)
T ss_pred ceeEEEecCCCHHHHHHHHhh-CCeEEEecccCCCcCCh
Confidence 999999999999999998876 47899999999999863
No 13
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=6.5e-36 Score=268.60 Aligned_cols=163 Identities=22% Similarity=0.359 Sum_probs=141.6
Q ss_pred eecCCcccccCcceeccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEEcCCCCCCcHHHHHHHHhhhhccCCCcceeeEE
Q 024446 82 VSNGNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVR 161 (267)
Q Consensus 82 ~~lG~tg~~Vs~LGlGt~~~g~~~~~~~~~~~~~~l~~A~d~Gin~fDTA~~YG~sE~~lG~al~~~~~~r~~~~~~~v~ 161 (267)
+.+ ++|++||.||||||+++ ++++.+++++|++.||||||||+.|| +|+.+|++|++.+.+|+ +++
T Consensus 7 ~~l-~~g~~v~~lglG~~~~~-------~~~~~~~l~~A~~~Gi~~~DTA~~Yg-~E~~lG~al~~~~~~R~-----~~~ 72 (275)
T PRK11565 7 IKL-QDGNVMPQLGLGVWQAS-------NEEVITAIHKALEVGYRSIDTAAIYK-NEEGVGKALKEASVARE-----ELF 72 (275)
T ss_pred EEc-CCCCccCCcceECccCC-------HHHHHHHHHHHHHhCCCEEEchhhhC-CHHHHHHHHHHcCCCHH-----HEE
Confidence 335 57899999999999863 47899999999999999999999999 58889999986432333 789
Q ss_pred eecccCCCCCCCCHHHHHHHHHHHHHHcCCCceeEEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHH
Q 024446 162 GLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRII 241 (267)
Q Consensus 162 i~tK~~~~~~~~~~~~i~~~l~~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~ 241 (267)
++||+++ .+++.+++++++||++||+||||+|++|||++..+.+.++|++|++|+++|+||+||||||++++++++
T Consensus 73 i~tK~~~----~~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~ 148 (275)
T PRK11565 73 ITTKLWN----DDHKRPREALEESLKKLQLDYVDLYLMHWPVPAIDHYVEAWKGMIELQKEGLIKSIGVCNFQIHHLQRL 148 (275)
T ss_pred EEEEecC----cchHHHHHHHHHHHHHhCCCceEEEEecCCCCCcCcHHHHHHHHHHHHHcCCeeEEeeccCCHHHHHHH
Confidence 9999763 367899999999999999999999999999875544789999999999999999999999999999998
Q ss_pred HHc-CCCEEEEeeeCCccCCCC
Q 024446 242 LEN-GIPVVSNQVQLRIGKFIP 262 (267)
Q Consensus 242 ~~~-g~~~~~~Q~~ysl~~r~~ 262 (267)
.+. +++|.++|++||+++++.
T Consensus 149 ~~~~~v~~~~~Q~~~~~~~~~~ 170 (275)
T PRK11565 149 IDETGVTPVINQIELHPLMQQR 170 (275)
T ss_pred HHhCCCCceeeeeecCCccchH
Confidence 753 577999999999998753
No 14
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=2.6e-35 Score=264.14 Aligned_cols=164 Identities=29% Similarity=0.449 Sum_probs=137.4
Q ss_pred cceeccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEEcCCCC--CCcHHHHHHHHhhhhccCCCcceeeEEeeccc---C
Q 024446 93 RVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHY--GPAEDLYGIFINRVRRERPPEFLDKVRGLTKW---V 167 (267)
Q Consensus 93 ~LGlGt~~~g~~~~~~~~~~~~~~l~~A~d~Gin~fDTA~~Y--G~sE~~lG~al~~~~~~r~~~~~~~v~i~tK~---~ 167 (267)
+||||||++++. ..+++++.++++.|++.|||+||||+.| |.+|+++|++|++.+..|+ +++|+||+ .
T Consensus 1 ~l~lG~~~~~~~--~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~sE~~lg~~l~~~~~~r~-----~~~i~tK~~~~~ 73 (283)
T PF00248_consen 1 PLGLGTWRLGGE--RVSEEEAEAILRRALEAGINFFDTADSYGNGRSERILGRALRKSRVPRD-----DIFISTKVYGDG 73 (283)
T ss_dssp SBEEECTTBTTT--TSTHHHHHHHHHHHHHTT--EEEECGGGGGGTHHHHHHHHHHHTSSTGG-----GSEEEEEEESSS
T ss_pred CEEEEccccCCC--CCCHHHHHHHHHHHHHcCCCeeccccccccccccccccccccccccccc-----cccccccccccc
Confidence 589999999754 6899999999999999999999999999 7799999999998332332 78889988 1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCceeEEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHc-CC
Q 024446 168 PPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GI 246 (267)
Q Consensus 168 ~~~~~~~~~~i~~~l~~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~-g~ 246 (267)
......+++.+++++++||++||+||||+|++|||+...+...++|++|++|+++|+||+||||||++++++++.+. .+
T Consensus 74 ~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~ 153 (283)
T PF00248_consen 74 KPEPDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSEDALEEVWEALEELKKEGKIRHIGVSNFSPEQLEAALKIGSI 153 (283)
T ss_dssp STGGGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSSHHHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHTCTSS
T ss_pred cccccccccccccccccccccccccchhccccccccccccccchhhhhhhhccccccccccccccccccccccccccccc
Confidence 22347899999999999999999999999999999987665889999999999999999999999999999998554 46
Q ss_pred CEEEEeeeCCccCCCCc
Q 024446 247 PVVSNQVQLRIGKFIPF 263 (267)
Q Consensus 247 ~~~~~Q~~ysl~~r~~e 263 (267)
+|+++|++||++++..+
T Consensus 154 ~~~~~q~~~n~~~~~~~ 170 (283)
T PF00248_consen 154 PPDVVQINYNLLNRREE 170 (283)
T ss_dssp -ESEEEEE-BTTBHBGG
T ss_pred ccccccccccccccccc
Confidence 89999999999955543
No 15
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=2.4e-34 Score=248.41 Aligned_cols=178 Identities=22% Similarity=0.369 Sum_probs=157.3
Q ss_pred eeecCCcccccCcceeccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEEcCCCCCC--cHHHHHHHHhhhhccCCCccee
Q 024446 81 TVSNGNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYGP--AEDLYGIFINRVRRERPPEFLD 158 (267)
Q Consensus 81 ~~~lG~tg~~Vs~LGlGt~~~g~~~~~~~~~~~~~~l~~A~d~Gin~fDTA~~YG~--sE~~lG~al~~~~~~r~~~~~~ 158 (267)
+..+|+.|+++|++.+|+|++. .|+ .+.++....|+.++|.|||+||-|++||. +|.++|++|+-.+ .+|.
T Consensus 3 rI~l~~~~~e~Sriv~G~wRl~-d~~-~~~~e~~~~Ie~~le~Gitt~DhADIYGgy~cE~~fg~aL~l~p-----~lRe 75 (298)
T COG4989 3 RITLAPDGLEFSRIVLGYWRLN-DWN-MSARELLSFIETALELGITTFDHADIYGGYQCEALFGEALKLAP-----GLRE 75 (298)
T ss_pred eEEecCCCccHHHHHHHHHhhh-hcc-CCHHHHHHHHHHHHHcCcccchhhhhcCCccHHHHHHHHHhcCh-----hhhh
Confidence 5668889999999999999995 454 45588899999999999999999999985 8999999998655 4455
Q ss_pred eEEeecccCC----------CCCCCCHHHHHHHHHHHHHHcCCCceeEEEEecCCCCCCCHHHHHHHHHHHHHcCCccEE
Q 024446 159 KVRGLTKWVP----------PPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTV 228 (267)
Q Consensus 159 ~v~i~tK~~~----------~~~~~~~~~i~~~l~~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~aL~~l~~~G~Ir~i 228 (267)
++.+.||.+- ..++++.++|.+++|+||+||++||+|+++||+||+-.+ .+++.+++..|++.||||++
T Consensus 76 kieivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpLmd-~eeVAeAf~~L~~sGKVr~f 154 (298)
T COG4989 76 KIEIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPLMD-AEEVAEAFTHLHKSGKVRHF 154 (298)
T ss_pred heEeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCcccCC-HHHHHHHHHHHHhcCCeeee
Confidence 8889999742 245889999999999999999999999999999999876 89999999999999999999
Q ss_pred EecCCCHHHHHHHHHc-CCCEEEEeeeCCccCCCCccCC
Q 024446 229 ALTNFDTERLRIILEN-GIPVVSNQVQLRIGKFIPFLNP 266 (267)
Q Consensus 229 GvSn~~~~~l~~~~~~-g~~~~~~Q~~ysl~~r~~e~~~ 266 (267)
|||||++.|++.+.+. ..++.+||++.|+++.....+|
T Consensus 155 GVSNf~p~Q~~LL~s~l~~~LvtNQlelS~~~~~~~~DG 193 (298)
T COG4989 155 GVSNFNPAQFELLQSRLPFTLVTNQLELSPLHTPMLLDG 193 (298)
T ss_pred ecCCCCHHHHHHHHHhccchhhhcceeeccccccccccc
Confidence 9999999999888765 3468999999999999887776
No 16
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=99.98 E-value=6.3e-32 Score=235.11 Aligned_cols=173 Identities=22% Similarity=0.295 Sum_probs=151.1
Q ss_pred eeecCCcccccCcceeccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEEcCCCCCC--cHHHHHHHHhhhhccCCCccee
Q 024446 81 TVSNGNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYGP--AEDLYGIFINRVRRERPPEFLD 158 (267)
Q Consensus 81 ~~~lG~tg~~Vs~LGlGt~~~g~~~~~~~~~~~~~~l~~A~d~Gin~fDTA~~YG~--sE~~lG~al~~~~~~r~~~~~~ 158 (267)
+|.+|+||++||+||||...++..|++.++++....+..|+.+|||+|||++.||. +|..+|.++++.||+
T Consensus 24 yR~lg~tgl~VSk~~fGga~L~~~fgd~~~e~~i~tv~eA~k~GINyiDTsp~Ygqs~se~~lg~al~~vPR~------- 96 (342)
T KOG1576|consen 24 YRQLGSTGLRVSKLGFGGAALGQLFGDEDEEEGILTVIEAFKSGINYIDTSPYYGQSRSEEGLGLALKDVPRE------- 96 (342)
T ss_pred HhhcCCCcceeeeeeecchhhhhhcCCcchhhhHHHHHHHHHccccceecCcccCcchhHHHHHHHHhhCChh-------
Confidence 89999999999999999999998888888888888888899999999999999986 899999999998877
Q ss_pred eEEeecccCCC------CCCCCHHHHHHHHHHHHHHcCCCceeEEEEecCCCC---CCCHHHHHHHHHHHHHcCCccEEE
Q 024446 159 KVRGLTKWVPP------PVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS---NPGYLDALNHLTDLKEEGKIKTVA 229 (267)
Q Consensus 159 ~v~i~tK~~~~------~~~~~~~~i~~~l~~SL~rLg~d~iDl~~lH~pd~~---~~~~~~~~~aL~~l~~~G~Ir~iG 229 (267)
..+|+||++.- -.+++++.+++++++||+||++||+|++|+|+.+.. ...+.|++.+|++++++||||+||
T Consensus 97 aYyIaTKvgRy~ld~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~ld~vl~Etlp~Le~lk~~Gk~RfiG 176 (342)
T KOG1576|consen 97 AYYIATKVGRYELDYANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPNLDIVLNETLPALEELKQEGKIRFIG 176 (342)
T ss_pred heeeeeeeeecccCccccccchHHHHHHHHHHHHHHhCCceeEEEEeecccccccccHHHHHHHHHHHHHHhcCceeEee
Confidence 88999998531 258999999999999999999999999999997654 223678999999999999999999
Q ss_pred ecCCCHHHHHHHHHcCC-CEEEEe--eeCCccCC
Q 024446 230 LTNFDTERLRIILENGI-PVVSNQ--VQLRIGKF 260 (267)
Q Consensus 230 vSn~~~~~l~~~~~~g~-~~~~~Q--~~ysl~~r 260 (267)
|+.|..+.+.++.+.+. .++++- ..|++.|.
T Consensus 177 itgypldvl~~~ae~~~G~~dvvlsY~ry~l~d~ 210 (342)
T KOG1576|consen 177 ITGYPLDVLTECAERGKGRLDVVLSYCRYTLNDN 210 (342)
T ss_pred ecccchHHHHHHHhcCCCceeeehhhhhhccccH
Confidence 99999999999988642 355555 67776553
No 17
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=99.97 E-value=9.9e-32 Score=243.23 Aligned_cols=175 Identities=18% Similarity=0.162 Sum_probs=150.3
Q ss_pred eeeecCCcccccCcceeccccCCCCC-CCCCHHHHHHHHHHHHHcCCCEEEcCCCC--CCcHHHHHHHHhhhhccCCCcc
Q 024446 80 ITVSNGNDSLEICRVLNGMWQTSGGW-GRIDRDDAVDAMLRYADAGLTTFDMADHY--GPAEDLYGIFINRVRRERPPEF 156 (267)
Q Consensus 80 ~~~~lG~tg~~Vs~LGlGt~~~g~~~-~~~~~~~~~~~l~~A~d~Gin~fDTA~~Y--G~sE~~lG~al~~~~~~r~~~~ 156 (267)
.||++|+||.++|.||||+|++.-.| +.++++.+.++|++|++.|||+||||+.| |.||..+|++|++..|+
T Consensus 2 lyr~~~k~g~~~s~lgfG~MRlp~~~~~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~~Re----- 76 (391)
T COG1453 2 LYRKFPKTGDELSILGFGCMRLPLKEQGSIDEENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDGYRE----- 76 (391)
T ss_pred chhhcCCCCcccceeccceeecccccCCCccHHHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhhcccc-----
Confidence 48999999999999999999998766 45889999999999999999999999999 99999999999875544
Q ss_pred eeeEEeecccCCCCCCCCHHHHHHHHHHHHHHcCCCceeEEEEecCCCCCCC-H--HHHHHHHHHHHHcCCccEEEecCC
Q 024446 157 LDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPG-Y--LDALNHLTDLKEEGKIKTVALTNF 233 (267)
Q Consensus 157 ~~~v~i~tK~~~~~~~~~~~~i~~~l~~SL~rLg~d~iDl~~lH~pd~~~~~-~--~~~~~aL~~l~~~G~Ir~iGvSn~ 233 (267)
+++++||...+ .--+++.+++-++++|++||+||+|+|+||..+.+.-+ . ...++.+++++++|+||++|+|.|
T Consensus 77 --kv~LaTKlp~~-~~~~~edm~r~fneqLekl~~Dy~D~yliH~l~~e~~~k~~~~g~~df~~kak~eGkIr~~GFSfH 153 (391)
T COG1453 77 --KVKLATKLPSW-PVKDREDMERIFNEQLEKLGTDYIDYYLIHGLNTETWEKIERLGVFDFLEKAKAEGKIRNAGFSFH 153 (391)
T ss_pred --eEEEEeecCCc-cccCHHHHHHHHHHHHHHhCCchhhhhhhccccHHHHHHHHccChHHHHHHHHhcCcEEEeeecCC
Confidence 89999998543 24588999999999999999999999999998652111 1 127899999999999999999999
Q ss_pred CHH-HHHHHHHcCCCEEEEeeeCCccCCCCc
Q 024446 234 DTE-RLRIILENGIPVVSNQVQLRIGKFIPF 263 (267)
Q Consensus 234 ~~~-~l~~~~~~g~~~~~~Q~~ysl~~r~~e 263 (267)
+.. .+.+++.. .+++++|++||.+|....
T Consensus 154 gs~e~~~~iv~a-~~~dfvqlq~ny~d~~n~ 183 (391)
T COG1453 154 GSTEVFKEIVDA-YPWDFVQLQYNYIDQKNQ 183 (391)
T ss_pred CCHHHHHHHHhc-CCcceEEeeeeeeccchh
Confidence 854 56677765 589999999999998644
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=97.16 E-value=0.00056 Score=59.80 Aligned_cols=48 Identities=31% Similarity=0.450 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHc-CCCEEEEeeeCC
Q 024446 209 YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GIPVVSNQVQLR 256 (267)
Q Consensus 209 ~~~~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~-g~~~~~~Q~~ys 256 (267)
..+.|+.||+++.+|+|..||||.|+..++++++.. .+.|.++|+...
T Consensus 155 lkplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~ 203 (285)
T KOG3023|consen 155 LKPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQVVPESNQVNLG 203 (285)
T ss_pred HHHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhccccccceeecc
Confidence 456999999999999999999999999999999985 578999999765
No 19
>PRK13796 GTPase YqeH; Provisional
Probab=81.51 E-value=34 Score=32.05 Aligned_cols=138 Identities=14% Similarity=0.137 Sum_probs=87.1
Q ss_pred CcceeccccCCCCCC-----CCCHHHHHHHHHHHHHcC---CCEEEcCCCCCCcHHHHHHHHhhhhccCCCcceeeEEee
Q 024446 92 CRVLNGMWQTSGGWG-----RIDRDDAVDAMLRYADAG---LTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGL 163 (267)
Q Consensus 92 s~LGlGt~~~g~~~~-----~~~~~~~~~~l~~A~d~G---in~fDTA~~YG~sE~~lG~al~~~~~~r~~~~~~~v~i~ 163 (267)
..+|-=|.++-. |+ ..++++..++++..-+.- +-.+|..+.-+.-...+.+... +.. -+.+.
T Consensus 34 ~~~C~RC~~l~h-y~~~~~~~~~~~~~~~~l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~~----~kp-----viLVi 103 (365)
T PRK13796 34 EVYCQRCFRLKH-YNEIQDVSLTDDDFLKLLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFVG----NNP-----VLLVG 103 (365)
T ss_pred CeEchhhhhhhc-cCcccCCCCCHHHHHHHHHhhcccCcEEEEEEECccCCCchhHHHHHHhC----CCC-----EEEEE
Confidence 345655655532 22 256677777777776555 5667876655542222333321 222 46788
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHHcCCCceeEEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHH
Q 024446 164 TKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRII 241 (267)
Q Consensus 164 tK~~~~~~~~~~~~i~~~l~~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~ 241 (267)
+|..-.+.....+.+.+.++...+.+|....|++.+..-.. ..+++.++.+.+..+.+.+--+|.+|.....+.-.
T Consensus 104 NK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~g--~gI~eL~~~I~~~~~~~~v~vvG~~NvGKSTLiN~ 179 (365)
T PRK13796 104 NKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLISAQKG--HGIDELLEAIEKYREGRDVYVVGVTNVGKSTLINR 179 (365)
T ss_pred EchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEEECCCC--CCHHHHHHHHHHhcCCCeEEEEcCCCCcHHHHHHH
Confidence 99754333345566777777777788876567777765432 23788888888887888899999999998876443
No 20
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=81.29 E-value=4.6 Score=39.26 Aligned_cols=120 Identities=18% Similarity=0.148 Sum_probs=79.1
Q ss_pred HHHHHHHcCCCEEE--cC--CCC--------CCcHHHHHHHHhhhhccCCCcceeeEEeecccCCCCC------------
Q 024446 116 AMLRYADAGLTTFD--MA--DHY--------GPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPV------------ 171 (267)
Q Consensus 116 ~l~~A~d~Gin~fD--TA--~~Y--------G~sE~~lG~al~~~~~~r~~~~~~~v~i~tK~~~~~~------------ 171 (267)
-++..-+.|+..+= || +.| |.-|.+..-+-+..+. .+..+++++.-.+.-..
T Consensus 108 ~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~f~~----~L~G~~~lTaGLGGMgGAQPlA~~mag~v 183 (545)
T TIGR01228 108 HFHELEAKGLMMYGQMTAGSWIYIGTQGILQGTYETFAELARQHFGG----SLKGKWVLTAGLGGMGGAQPLAVTMNGGV 183 (545)
T ss_pred HHHHHHHcccccccCccccceEEEcCcceeecHHHHHHHHHHHhcCC----CCceeEEEEeCCCccccccHHHHHHcCce
Confidence 34455566766553 33 444 3357764443333321 34557777776543211
Q ss_pred ----CCCHHHHHHHHHHHHHHcCCCceeEEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCC
Q 024446 172 ----KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIP 247 (267)
Q Consensus 172 ----~~~~~~i~~~l~~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~g~~ 247 (267)
..++.. .-+|+.+.|+|.+ .++++++++..++.+++|+..+||+-..-.+.+.++.+.++.
T Consensus 184 ~i~vEvd~~r-------i~kR~~~gyld~~--------~~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~r~i~ 248 (545)
T TIGR01228 184 SIAVEVDESR-------IDKRLETKYCDEQ--------TDSLDEALARAEEAKAEGKPISIGLLGNAAEVLPELLKRGVV 248 (545)
T ss_pred EEEEEECHHH-------HHHHHhcCcceeE--------cCCHHHHHHHHHHHHHcCCceEEEeeccHHHHHHHHHHcCCC
Confidence 133333 3468888999886 234899999999999999999999999999999999998876
Q ss_pred EEE--Eeee
Q 024446 248 VVS--NQVQ 254 (267)
Q Consensus 248 ~~~--~Q~~ 254 (267)
|++ -|..
T Consensus 249 pDlvtDQTS 257 (545)
T TIGR01228 249 PDVVTDQTS 257 (545)
T ss_pred CCCcCCCCc
Confidence 654 4543
No 21
>PRK05414 urocanate hydratase; Provisional
Probab=81.08 E-value=4.9 Score=39.24 Aligned_cols=120 Identities=17% Similarity=0.133 Sum_probs=79.8
Q ss_pred HHHHHHHcCCCEEE--cC--CCC--------CCcHHHHHHHHhhhhccCCCcceeeEEeecccCCCCC------------
Q 024446 116 AMLRYADAGLTTFD--MA--DHY--------GPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPV------------ 171 (267)
Q Consensus 116 ~l~~A~d~Gin~fD--TA--~~Y--------G~sE~~lG~al~~~~~~r~~~~~~~v~i~tK~~~~~~------------ 171 (267)
-++..-+.|+..+= || +.| |.-|.++.-+-+... . .+..++++++-.+.-..
T Consensus 117 ~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~a~rk~f~-g---~L~G~~~lTaGLGGMgGAQPlA~~mag~v 192 (556)
T PRK05414 117 HFNELEAKGLTMYGQMTAGSWIYIGSQGIVQGTYETFAEAARQHFG-G---DLAGRLVLTAGLGGMGGAQPLAATMAGAV 192 (556)
T ss_pred HHHHHHHcccccccCccccceeEEcCceeeecHHHHHHHHHHHhcC-C---CCceeEEEEecCCccccccHHHHHhcCce
Confidence 34455566766553 33 444 345776444433332 1 45567777776543211
Q ss_pred ----CCCHHHHHHHHHHHHHHcCCCceeEEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCC
Q 024446 172 ----KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIP 247 (267)
Q Consensus 172 ----~~~~~~i~~~l~~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~g~~ 247 (267)
..++.. .-+|+.+.|+|.+ .++++++++..++.+++|+..+||+-..-.+.+.++++.++.
T Consensus 193 ~i~vEvd~~r-------i~kR~~~gyld~~--------~~~Ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~~i~ 257 (556)
T PRK05414 193 CLAVEVDESR-------IDKRLRTGYLDEK--------ADDLDEALALAEEAKAAGEPLSIGLLGNAADVLPELVRRGIR 257 (556)
T ss_pred EEEEEECHHH-------HHHHHhCCcceeE--------cCCHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHHHcCCC
Confidence 133333 3468888999987 234899999999999999999999999999999999998876
Q ss_pred EEE--Eeee
Q 024446 248 VVS--NQVQ 254 (267)
Q Consensus 248 ~~~--~Q~~ 254 (267)
|++ -|..
T Consensus 258 pDlvtDQTS 266 (556)
T PRK05414 258 PDLVTDQTS 266 (556)
T ss_pred CCccCcCcc
Confidence 654 4554
No 22
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=73.13 E-value=8.8 Score=37.53 Aligned_cols=122 Identities=17% Similarity=0.196 Sum_probs=68.2
Q ss_pred HHHHHHHHcCCCEEE--cC--CCC-CC-------cHHHHHHHHhhhhccCCCcceeeEEeecccCCCCC-----------
Q 024446 115 DAMLRYADAGLTTFD--MA--DHY-GP-------AEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPV----------- 171 (267)
Q Consensus 115 ~~l~~A~d~Gin~fD--TA--~~Y-G~-------sE~~lG~al~~~~~~r~~~~~~~v~i~tK~~~~~~----------- 171 (267)
+-+++..+.|++.+= || +.| |. .|.+..-+-+... . .+..++++++-.+.-..
T Consensus 106 e~f~~l~~~GltmYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~~g-~---~L~Gk~~lTaGLGGMgGAQplA~~m~g~ 181 (546)
T PF01175_consen 106 EHFERLEALGLTMYGQMTAGSWIYIGPQGIVQGTYETFLNAARKHFG-G---DLAGKLFLTAGLGGMGGAQPLAATMAGG 181 (546)
T ss_dssp HHHHHHHHTT---B-TTTTTTT---TTHHHHHHHHHHHHHHHHHHST-T---S-TT-EEEEE--STTCCHHHHHHHHTT-
T ss_pred HHHHHHHhccchhhccccccceEEEcccceeehhhHHHHHHHHHhcC-C---CCcceEEEEecccccccchHHHHHhcCc
Confidence 345566677877664 44 344 32 4665333322232 2 45567788876643211
Q ss_pred -----CCCHHHHHHHHHHHHHHcCCCceeEEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCC
Q 024446 172 -----KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGI 246 (267)
Q Consensus 172 -----~~~~~~i~~~l~~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~g~ 246 (267)
..+++.+ -+|+.+.|+|.+- ++++++++..++.+++|+..+||+-..-.+.++++.+.++
T Consensus 182 v~l~vEvd~~ri-------~kR~~~g~ld~~~--------~~ldea~~~~~ea~~~~~~~SIg~~GN~ad~~~~l~~~~i 246 (546)
T PF01175_consen 182 VGLIVEVDPSRI-------EKRLEQGYLDEVT--------DDLDEALARAKEARAKKEPLSIGLLGNAADLWEELVERGI 246 (546)
T ss_dssp EEEEEES-HHHH-------HHHHHTTSSSEEE--------SSHHHHHHHHHHHHHTT--EEEEEES-HHHHHHHHHHTT-
T ss_pred eEEEEEECHHHH-------HHHHhCCCeeEEc--------CCHHHHHHHHHHhhccCCeeEEEEeccHHHHHHHHHHcCC
Confidence 2334444 4577788999872 3489999999999999999999999988999999999886
Q ss_pred CEE--EEeeeC
Q 024446 247 PVV--SNQVQL 255 (267)
Q Consensus 247 ~~~--~~Q~~y 255 (267)
.|+ .-|...
T Consensus 247 ~pDl~tDQTS~ 257 (546)
T PF01175_consen 247 IPDLVTDQTSA 257 (546)
T ss_dssp --SEE---SST
T ss_pred CCCcccCCCcc
Confidence 555 456543
No 23
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=72.61 E-value=76 Score=28.89 Aligned_cols=138 Identities=9% Similarity=0.084 Sum_probs=77.6
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEcCCCCCC---cHHHHHHHHhhhhccCCCcceeeEEeecccCCCCCCCCHHHHHHHHH
Q 024446 107 RIDRDDAVDAMLRYADAGLTTFDMADHYGP---AEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESID 183 (267)
Q Consensus 107 ~~~~~~~~~~l~~A~d~Gin~fDTA~~YG~---sE~~lG~al~~~~~~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~l~ 183 (267)
..+.++..++++.+.+.|++.|.-.. |. ... +-+.++....... ...+.++|.-. .+.+ .-
T Consensus 48 ~ls~eei~~~i~~~~~~gi~~I~~tG--GEPll~~~-l~~li~~i~~~~~---~~~i~itTNG~---------ll~~-~~ 111 (331)
T PRK00164 48 LLSLEEIERLVRAFVALGVRKVRLTG--GEPLLRKD-LEDIIAALAALPG---IRDLALTTNGY---------LLAR-RA 111 (331)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEEC--CCCcCccC-HHHHHHHHHhcCC---CceEEEEcCch---------hHHH-HH
Confidence 46788999999999999998887542 32 111 2333333211100 11455565421 1112 22
Q ss_pred HHHHHcCCCceeEEEEecCCCC-------CCCHHHHHHHHHHHHHcCC----ccEEEecCCCHHHHHHHHHc--CCCEEE
Q 024446 184 VSRRRMDVPCLDMLQFHWWDYS-------NPGYLDALNHLTDLKEEGK----IKTVALTNFDTERLRIILEN--GIPVVS 250 (267)
Q Consensus 184 ~SL~rLg~d~iDl~~lH~pd~~-------~~~~~~~~~aL~~l~~~G~----Ir~iGvSn~~~~~l~~~~~~--g~~~~~ 250 (267)
..|...|++.|- +-+|.+++. ...+++++++++.+++.|. |..+.+-..+.+++.++.+. ..++.+
T Consensus 112 ~~L~~agl~~i~-ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~~~~gv~v 190 (331)
T PRK00164 112 AALKDAGLDRVN-VSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWAKDRGIQL 190 (331)
T ss_pred HHHHHcCCCEEE-EEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHHHhCCCeE
Confidence 345556766553 334544321 1237889999999999986 33555555666777665542 234556
Q ss_pred EeeeCCccCCC
Q 024446 251 NQVQLRIGKFI 261 (267)
Q Consensus 251 ~Q~~ysl~~r~ 261 (267)
.-++|.++...
T Consensus 191 ~~ie~~p~~~~ 201 (331)
T PRK00164 191 RFIELMPTGEG 201 (331)
T ss_pred EEEEeeECCCC
Confidence 66677776543
No 24
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=71.74 E-value=17 Score=32.21 Aligned_cols=74 Identities=12% Similarity=0.041 Sum_probs=48.8
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCceeEEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcC
Q 024446 171 VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENG 245 (267)
Q Consensus 171 ~~~~~~~i~~~l~~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~g 245 (267)
...+.+...+..+-..+-+++++|-|=.+.++....|+..+++++-+.|+++|-+-. --++-++-..+++.+.|
T Consensus 71 Gc~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~Vl-PY~~~D~v~akrL~d~G 144 (247)
T PF05690_consen 71 GCRTAEEAVRTARLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVL-PYCTDDPVLAKRLEDAG 144 (247)
T ss_dssp T-SSHHHHHHHHHHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EEE-EEE-S-HHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEEe-ecCCCCHHHHHHHHHCC
Confidence 467888888888999999999999998777776666778999999999999996432 23344444556666655
No 25
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=70.92 E-value=85 Score=28.73 Aligned_cols=136 Identities=11% Similarity=0.104 Sum_probs=78.1
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEcCCCCCCcHHH----HHHHHhhhhccCCCcceeeEEeecccCCCCCCCCHHHHHHHH
Q 024446 107 RIDRDDAVDAMLRYADAGLTTFDMADHYGPAEDL----YGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESI 182 (267)
Q Consensus 107 ~~~~~~~~~~l~~A~d~Gin~fDTA~~YG~sE~~----lG~al~~~~~~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~l 182 (267)
..+.++...+++.+.+.|+..|.-.. |. .+ +-+.++..... . . ...+.++|.- ..+. ..
T Consensus 44 ~ls~eei~~li~~~~~~Gv~~I~~tG--GE--Pllr~dl~~li~~i~~~-~-~-l~~i~itTNG---------~ll~-~~ 106 (329)
T PRK13361 44 VLSLEELAWLAQAFTELGVRKIRLTG--GE--PLVRRGCDQLVARLGKL-P-G-LEELSLTTNG---------SRLA-RF 106 (329)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEC--cC--CCccccHHHHHHHHHhC-C-C-CceEEEEeCh---------hHHH-HH
Confidence 46788999999999999998886542 32 22 12333322111 1 1 1134555541 1122 23
Q ss_pred HHHHHHcCCCceeEEEEecCCCC-------CCCHHHHHHHHHHHHHcCC----ccEEEecCCCHHHHHHHHHc--CCCEE
Q 024446 183 DVSRRRMDVPCLDMLQFHWWDYS-------NPGYLDALNHLTDLKEEGK----IKTVALTNFDTERLRIILEN--GIPVV 249 (267)
Q Consensus 183 ~~SL~rLg~d~iDl~~lH~pd~~-------~~~~~~~~~aL~~l~~~G~----Ir~iGvSn~~~~~l~~~~~~--g~~~~ 249 (267)
-+.|...|++++.+ -++.++++ ...++.+++.++.+++.|. |..+.+...+.+++.++.+. ..+++
T Consensus 107 ~~~L~~aGl~~v~I-SlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~in~v~~~g~N~~ei~~~~~~~~~~gi~ 185 (329)
T PRK13361 107 AAELADAGLKRLNI-SLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIKLNAVILRGQNDDEVLDLVEFCRERGLD 185 (329)
T ss_pred HHHHHHcCCCeEEE-EeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceEEEEEEECCCCHHHHHHHHHHHHhcCCe
Confidence 45567778887763 45554431 1237889999999999986 33445555777777665542 23344
Q ss_pred EEeeeCCccCC
Q 024446 250 SNQVQLRIGKF 260 (267)
Q Consensus 250 ~~Q~~ysl~~r 260 (267)
+.-++|-|+.+
T Consensus 186 ~~~ie~mP~g~ 196 (329)
T PRK13361 186 IAFIEEMPLGE 196 (329)
T ss_pred EEEEecccCCC
Confidence 44556666554
No 26
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=69.80 E-value=29 Score=33.04 Aligned_cols=80 Identities=8% Similarity=-0.045 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHcCCCEEEcCCCCCCcHHHHHHHHhhhhccCCCcceeeEEeecccCCCCCCCCHHHHHHHHHHHHHHcCC
Q 024446 112 DAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDV 191 (267)
Q Consensus 112 ~~~~~l~~A~d~Gin~fDTA~~YG~sE~~lG~al~~~~~~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~l~~SL~rLg~ 191 (267)
....++++|++.|++++|||.++-. ..-+.+..++.+ +......-+.| ..+--.....+++--+ .+
T Consensus 80 ~~~~i~ka~i~~gv~yvDts~~~~~-~~~~~~~a~~Ag--------it~v~~~G~dP---Gi~nv~a~~a~~~~~~--~i 145 (389)
T COG1748 80 VDLTILKACIKTGVDYVDTSYYEEP-PWKLDEEAKKAG--------ITAVLGCGFDP---GITNVLAAYAAKELFD--EI 145 (389)
T ss_pred hhHHHHHHHHHhCCCEEEcccCCch-hhhhhHHHHHcC--------eEEEcccCcCc---chHHHHHHHHHHHhhc--cc
Confidence 4458999999999999999976544 122232222211 01112222222 2222233333333222 58
Q ss_pred CceeEEEEecCCCC
Q 024446 192 PCLDMLQFHWWDYS 205 (267)
Q Consensus 192 d~iDl~~lH~pd~~ 205 (267)
+++|+|..+-|+..
T Consensus 146 ~si~iy~g~~g~~~ 159 (389)
T COG1748 146 ESIDIYVGGLGEHG 159 (389)
T ss_pred cEEEEEEecCCCCC
Confidence 99999999988765
No 27
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=69.51 E-value=37 Score=29.56 Aligned_cols=82 Identities=15% Similarity=0.061 Sum_probs=55.4
Q ss_pred CCCHHHHHHHHHHHHHHcCCCceeEEEEecCCCCCCCHHHHHHHHHHHHHcC-CccEEEecCCCHHHHHHHHHcCCCEEE
Q 024446 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG-KIKTVALTNFDTERLRIILENGIPVVS 250 (267)
Q Consensus 172 ~~~~~~i~~~l~~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~aL~~l~~~G-~Ir~iGvSn~~~~~l~~~~~~g~~~~~ 250 (267)
.++.+...+-++. |.++|+++|++-..-.+... +...+.++.++++++.+ .++...++....+.++.+.+.+ ++.
T Consensus 15 ~~s~e~~~~i~~~-L~~~GV~~IEvg~~~~~~~~-p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~g--~~~ 90 (265)
T cd03174 15 TFSTEDKLEIAEA-LDEAGVDSIEVGSGASPKAV-PQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEAG--VDE 90 (265)
T ss_pred CCCHHHHHHHHHH-HHHcCCCEEEeccCcCcccc-ccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhCC--cCE
Confidence 4556665555554 77899999999765543221 22355788888999988 6777788876678888888776 455
Q ss_pred EeeeCCc
Q 024446 251 NQVQLRI 257 (267)
Q Consensus 251 ~Q~~ysl 257 (267)
+++.++.
T Consensus 91 i~i~~~~ 97 (265)
T cd03174 91 VRIFDSA 97 (265)
T ss_pred EEEEEec
Confidence 5555443
No 28
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=69.42 E-value=34 Score=30.27 Aligned_cols=115 Identities=11% Similarity=0.061 Sum_probs=58.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEcCCCCCCcHHHHHHHHhhhhccCCCcceeeEEeecccCC-----------------CC
Q 024446 108 IDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVP-----------------PP 170 (267)
Q Consensus 108 ~~~~~~~~~l~~A~d~Gin~fDTA~~YG~sE~~lG~al~~~~~~r~~~~~~~v~i~tK~~~-----------------~~ 170 (267)
.+.++..++.+.+-+.||.||=|...- +-+ +++.+..-+ -++|++---. ..
T Consensus 53 l~~e~~~~L~~~~~~~gi~f~stpfd~----~s~-d~l~~~~~~-------~~KIaS~dl~n~~lL~~~A~tgkPvIlST 120 (241)
T PF03102_consen 53 LSEEQHKELFEYCKELGIDFFSTPFDE----ESV-DFLEELGVP-------AYKIASGDLTNLPLLEYIAKTGKPVILST 120 (241)
T ss_dssp S-HHHHHHHHHHHHHTT-EEEEEE-SH----HHH-HHHHHHT-S-------EEEE-GGGTT-HHHHHHHHTT-S-EEEE-
T ss_pred CCHHHHHHHHHHHHHcCCEEEECCCCH----HHH-HHHHHcCCC-------EEEeccccccCHHHHHHHHHhCCcEEEEC
Confidence 567899999999999999999876532 111 233332221 2333331100 00
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCceeEEEEecCCCCCCCH-HHHHHHHHHHHHcCCccEEEecCCCHHHH
Q 024446 171 VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGY-LDALNHLTDLKEEGKIKTVALTNFDTERL 238 (267)
Q Consensus 171 ~~~~~~~i~~~l~~SL~rLg~d~iDl~~lH~pd~~~~~~-~~~~~aL~~l~~~G~Ir~iGvSn~~~~~l 238 (267)
.-.+.+.|.++++...++-+ -|+.++|....-.... +--+..+..|++.=- --||.|.|+....
T Consensus 121 G~stl~EI~~Av~~~~~~~~---~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~-~~vG~SDHt~g~~ 185 (241)
T PF03102_consen 121 GMSTLEEIERAVEVLREAGN---EDLVLLHCVSSYPTPPEDVNLRVIPTLKERFG-VPVGYSDHTDGIE 185 (241)
T ss_dssp TT--HHHHHHHHHHHHHHCT-----EEEEEE-SSSS--GGG--TTHHHHHHHHST-SEEEEEE-SSSSH
T ss_pred CCCCHHHHHHHHHHHHhcCC---CCEEEEecCCCCCCChHHcChHHHHHHHHhcC-CCEEeCCCCCCcH
Confidence 13456778877777645444 5889999864321112 224555556654333 5789999987643
No 29
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=69.32 E-value=12 Score=36.01 Aligned_cols=57 Identities=21% Similarity=0.218 Sum_probs=49.1
Q ss_pred HHcCCCceeEEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCEEEE
Q 024446 187 RRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSN 251 (267)
Q Consensus 187 ~rLg~d~iDl~~lH~pd~~~~~~~~~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~g~~~~~~ 251 (267)
+||.+.|+|.. .++++|+++-.++..++|+-.+||+-..-.+.+.+++++++.|+++
T Consensus 205 ~Rl~t~y~d~~--------a~~ldeAl~~a~~~~~ag~p~SIgl~GNaaei~~~l~~r~~~pD~v 261 (561)
T COG2987 205 KRLRTGYLDEI--------AETLDEALALAEEATAAGEPISIGLLGNAAEILPELLRRGIRPDLV 261 (561)
T ss_pred HHHhcchhhhh--------cCCHHHHHHHHHHHHhcCCceEEEEeccHHHHHHHHHHcCCCCcee
Confidence 57888998875 2348899999999999999999999999999999999988777765
No 30
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=68.61 E-value=87 Score=27.91 Aligned_cols=75 Identities=12% Similarity=0.053 Sum_probs=62.2
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCceeEEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcC
Q 024446 170 PVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENG 245 (267)
Q Consensus 170 ~~~~~~~~i~~~l~~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~g 245 (267)
...++.+...+-.+-..+-+|+++|-|=.+.++....++..+++++.++|+++|.+ -+-+++-++...+++.+.|
T Consensus 70 aG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~-vlpyc~dd~~~ar~l~~~G 144 (248)
T cd04728 70 AGCRTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFT-VLPYCTDDPVLAKRLEDAG 144 (248)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCE-EEEEeCCCHHHHHHHHHcC
Confidence 44678888888888888999999999998888887778899999999999999974 4456777888877777765
No 31
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=64.32 E-value=1.1e+02 Score=27.77 Aligned_cols=138 Identities=9% Similarity=0.074 Sum_probs=75.5
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEcCCCCCC---cHHHHHHHHhhhhccCCCcceeeEEeecccCCCCCCCCHHHHHHHHH
Q 024446 107 RIDRDDAVDAMLRYADAGLTTFDMADHYGP---AEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESID 183 (267)
Q Consensus 107 ~~~~~~~~~~l~~A~d~Gin~fDTA~~YG~---sE~~lG~al~~~~~~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~l~ 183 (267)
..+.++..++++.+.+.|+..|.-+. |. ... +-+.++...... .+ ..+.++|.-. . +. ..-
T Consensus 42 ~ls~eei~~~i~~~~~~gv~~V~ltG--GEPll~~~-l~~li~~i~~~~--gi-~~v~itTNG~-----l----l~-~~~ 105 (334)
T TIGR02666 42 LLTFEEIERLVRAFVGLGVRKVRLTG--GEPLLRKD-LVELVARLAALP--GI-EDIALTTNGL-----L----LA-RHA 105 (334)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEC--ccccccCC-HHHHHHHHHhcC--CC-CeEEEEeCch-----h----HH-HHH
Confidence 36788999999999999998886542 32 111 122333221110 11 1455666421 1 11 123
Q ss_pred HHHHHcCCCceeEEEEecCCC--------CCCCHHHHHHHHHHHHHcCCc----cEEEecCCCHHHHHHHHHc--CCCEE
Q 024446 184 VSRRRMDVPCLDMLQFHWWDY--------SNPGYLDALNHLTDLKEEGKI----KTVALTNFDTERLRIILEN--GIPVV 249 (267)
Q Consensus 184 ~SL~rLg~d~iDl~~lH~pd~--------~~~~~~~~~~aL~~l~~~G~I----r~iGvSn~~~~~l~~~~~~--g~~~~ 249 (267)
+.|.+.|+++|-+ -++.+++ ....++++++.++.+++.|.- ..+-+.+.+.+++.++.+. ..++.
T Consensus 106 ~~L~~~gl~~v~I-Sld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~in~vv~~g~n~~ei~~l~~~~~~~gv~ 184 (334)
T TIGR02666 106 KDLKEAGLKRVNV-SLDSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPVKLNTVVMRGVNDDEIVDLAEFAKERGVT 184 (334)
T ss_pred HHHHHcCCCeEEE-ecccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHHHHHhcCCe
Confidence 4566777766542 3444332 122478899999999999863 2234455777777665541 22344
Q ss_pred EEeeeCCccCCC
Q 024446 250 SNQVQLRIGKFI 261 (267)
Q Consensus 250 ~~Q~~ysl~~r~ 261 (267)
+.=++|.++...
T Consensus 185 ~~~ie~mp~~~~ 196 (334)
T TIGR02666 185 LRFIELMPLGEG 196 (334)
T ss_pred EEEEeccCCCCC
Confidence 444456665443
No 32
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=63.76 E-value=1.1e+02 Score=27.37 Aligned_cols=131 Identities=16% Similarity=0.181 Sum_probs=79.7
Q ss_pred CHHHHHHHHHHHHHcCCCEEEcC----------CCCCCcHHHHHHHHhhhhccCCCcceeeEEeecccCCCCCCCCHHHH
Q 024446 109 DRDDAVDAMLRYADAGLTTFDMA----------DHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIV 178 (267)
Q Consensus 109 ~~~~~~~~l~~A~d~Gin~fDTA----------~~YG~sE~~lG~al~~~~~~r~~~~~~~v~i~tK~~~~~~~~~~~~i 178 (267)
+.++..++.+.+.+.|+..||.- ..|+...+.+-+.++..... . ++-+.-|..+. . +.+
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~-~-----~~Pv~vKl~~~---~--~~~ 168 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKA-T-----DVPVIVKLTPN---V--TDI 168 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhc-c-----CCCEEEEeCCC---c--hhH
Confidence 45778888888889999999862 23555566666767654322 0 33444555332 1 122
Q ss_pred HHHHHHHHHHcCCCceeEEE------EecCC--C---------C-CCCHHHHHHHHHHHHHcCCccEEEecC-CCHHHHH
Q 024446 179 RESIDVSRRRMDVPCLDMLQ------FHWWD--Y---------S-NPGYLDALNHLTDLKEEGKIKTVALTN-FDTERLR 239 (267)
Q Consensus 179 ~~~l~~SL~rLg~d~iDl~~------lH~pd--~---------~-~~~~~~~~~aL~~l~~~G~Ir~iGvSn-~~~~~l~ 239 (267)
. .+-+.++..|.|.|++.- +|... + . .....-.++.+.++++.=.+.-||+.. ++++.+.
T Consensus 169 ~-~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~~da~ 247 (296)
T cd04740 169 V-EIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASGEDAL 247 (296)
T ss_pred H-HHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCCCHHHHH
Confidence 2 233456788988887641 11100 0 0 000122567777887766788999988 4789999
Q ss_pred HHHHcCCCEEEEee
Q 024446 240 IILENGIPVVSNQV 253 (267)
Q Consensus 240 ~~~~~g~~~~~~Q~ 253 (267)
++++.| .+.+|+
T Consensus 248 ~~l~~G--Ad~V~i 259 (296)
T cd04740 248 EFLMAG--ASAVQV 259 (296)
T ss_pred HHHHcC--CCEEEE
Confidence 988876 477776
No 33
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=63.58 E-value=39 Score=29.96 Aligned_cols=75 Identities=16% Similarity=0.089 Sum_probs=56.2
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCceeEEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcC
Q 024446 170 PVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENG 245 (267)
Q Consensus 170 ~~~~~~~~i~~~l~~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~g 245 (267)
....+.+......+-..+-+++|+|-|=.+-+++.-.|+..+++++-|.|+++|-+-.- -++-++-..+++.+.|
T Consensus 77 aGc~taeEAv~tArlARE~~~t~wiKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~VlP-Y~~dD~v~arrLee~G 151 (262)
T COG2022 77 AGCRTAEEAVRTARLAREALGTNWIKLEVIGDEKTLLPDPIETLKAAEQLVKEGFVVLP-YTTDDPVLARRLEEAG 151 (262)
T ss_pred cccCCHHHHHHHHHHHHHHccCCeEEEEEecCCcccCCChHHHHHHHHHHHhCCCEEee-ccCCCHHHHHHHHhcC
Confidence 34678888888888899999999999998888888788889999999999999964322 2223333344555544
No 34
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=63.45 E-value=1.2e+02 Score=27.61 Aligned_cols=85 Identities=12% Similarity=0.039 Sum_probs=53.3
Q ss_pred CCCHHHHHHHHHHHHHHcCCCceeEEEEecCCCC-CCCHHHHHHHHHHHHHc--CCccEE-------EecCCCHHHHHHH
Q 024446 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS-NPGYLDALNHLTDLKEE--GKIKTV-------ALTNFDTERLRII 241 (267)
Q Consensus 172 ~~~~~~i~~~l~~SL~rLg~d~iDl~~lH~pd~~-~~~~~~~~~aL~~l~~~--G~Ir~i-------GvSn~~~~~l~~~ 241 (267)
..+++.+.+++...+++.|.|.||+=.=+ +... ........++|.+|+++ ++.-.+ |+.......++.+
T Consensus 86 ~~~~~~~~~a~~~~i~~y~~dgiDfDiE~-~~~~d~~~~~~~~~al~~Lq~~~p~l~vs~Tlp~~p~gl~~~g~~~l~~a 164 (294)
T cd06543 86 CTSADQLAAAYQKVIDAYGLTHLDFDIEG-GALTDTAAIDRRAQALALLQKEYPDLKISFTLPVLPTGLTPDGLNVLEAA 164 (294)
T ss_pred cccHHHHHHHHHHHHHHhCCCeEEEeccC-CccccchhHHHHHHHHHHHHHHCCCcEEEEecCCCCCCCChhHHHHHHHH
Confidence 45889999999999999999999995333 2221 11245667778888876 332222 2222333456666
Q ss_pred HHcCCCEEEEee-eCCc
Q 024446 242 LENGIPVVSNQV-QLRI 257 (267)
Q Consensus 242 ~~~g~~~~~~Q~-~ysl 257 (267)
.+.|+.++++.+ .|.+
T Consensus 165 ~~~Gv~~d~VNiMtmDy 181 (294)
T cd06543 165 AANGVDLDTVNIMTMDY 181 (294)
T ss_pred HHcCCCcceeeeeeecC
Confidence 667877776554 3444
No 35
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=62.39 E-value=32 Score=29.59 Aligned_cols=67 Identities=13% Similarity=0.243 Sum_probs=42.4
Q ss_pred HHHHcCCCceeEEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEEec-CCCHHHHHHHHHcCCCEEEEeeeC
Q 024446 185 SRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRIILENGIPVVSNQVQL 255 (267)
Q Consensus 185 SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~aL~~l~~~G~Ir~iGvS-n~~~~~l~~~~~~g~~~~~~Q~~y 255 (267)
....+|.||+-+.+... .+..-+. +....+.+.. .+.++.+||. |-+++.+.++.+. .+++++|+.-
T Consensus 16 ~~~~~GaD~iGfIf~~~-SpR~V~~-~~a~~i~~~~-~~~~~~VgVf~~~~~~~i~~~~~~-~~~d~vQLHG 83 (207)
T PRK13958 16 AASQLPIDAIGFIHYEK-SKRHQTI-TQIKKLASAV-PNHIDKVCVVVNPDLTTIEHILSN-TSINTIQLHG 83 (207)
T ss_pred HHHHcCCCEEEEecCCC-CcccCCH-HHHHHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHh-CCCCEEEECC
Confidence 34569999999974331 1111112 3333333332 3568899996 7888999888765 4689999864
No 36
>PRK02399 hypothetical protein; Provisional
Probab=60.77 E-value=32 Score=32.85 Aligned_cols=76 Identities=20% Similarity=0.311 Sum_probs=53.0
Q ss_pred HHHHHHHHcCCCceeEEEEecCCCCCCCHHHHHHHHHHHHHcCCccEE--------------EecCCCHHHHHHHHHcCC
Q 024446 181 SIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTV--------------ALTNFDTERLRIILENGI 246 (267)
Q Consensus 181 ~l~~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~aL~~l~~~G~Ir~i--------------GvSn~~~~~l~~~~~~g~ 246 (267)
++++..++|.-...|.+.+|.-.. -=++||+|.++|.+..+ ||-+..++++..+.+.|+
T Consensus 200 ~v~~~~~~Le~~GyEvlVFHATG~-------GGraME~Li~~G~~~gVlDlTttEv~d~l~GGv~sagp~Rl~Aa~~~gI 272 (406)
T PRK02399 200 CVQAAREELEARGYEVLVFHATGT-------GGRAMEKLIDSGLIAGVLDLTTTEVCDELFGGVLAAGPDRLEAAARTGI 272 (406)
T ss_pred HHHHHHHHHHhCCCeEEEEcCCCC-------chHHHHHHHHcCCceEEEEcchHHHHHHHhCcCccCCccHHHHHHHcCC
Confidence 444444445444469999997643 22578999999998876 788888999999988887
Q ss_pred CE-----EEEeeeCCccCCCCc
Q 024446 247 PV-----VSNQVQLRIGKFIPF 263 (267)
Q Consensus 247 ~~-----~~~Q~~ysl~~r~~e 263 (267)
|- .+..+.|-+.+.-||
T Consensus 273 P~Vvs~GalDmVnFg~~~tvPe 294 (406)
T PRK02399 273 PQVVSPGALDMVNFGAPDTVPE 294 (406)
T ss_pred CEEecCCceeeeecCCcccccH
Confidence 63 345666666655444
No 37
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=60.20 E-value=17 Score=32.22 Aligned_cols=64 Identities=19% Similarity=0.220 Sum_probs=40.8
Q ss_pred cCCcccccCcceeccccCCC--CCCCCCHHHHHHHHHHHH----HcCCCEEEcCC--CC-C-CcHHHHHHHHhh
Q 024446 84 NGNDSLEICRVLNGMWQTSG--GWGRIDRDDAVDAMLRYA----DAGLTTFDMAD--HY-G-PAEDLYGIFINR 147 (267)
Q Consensus 84 lG~tg~~Vs~LGlGt~~~g~--~~~~~~~~~~~~~l~~A~----d~Gin~fDTA~--~Y-G-~sE~~lG~al~~ 147 (267)
+-.+|+.+|.+||.+.+-.. .-++...+++.++++.|+ +.||+.|--|. +| . ..+....+++++
T Consensus 63 i~etgv~ipSmClSaHRRfPfGS~D~~~r~~aleiM~KaI~LA~dLGIRtIQLAGYDVYYE~~d~eT~~rFi~g 136 (287)
T COG3623 63 IQETGVRIPSMCLSAHRRFPFGSKDEATRQQALEIMEKAIQLAQDLGIRTIQLAGYDVYYEEADEETRQRFIEG 136 (287)
T ss_pred HHHhCCCccchhhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHhCceeEeeccceeeeccCCHHHHHHHHHH
Confidence 34678999999999866432 222344566666666665 89999999884 33 2 134444666554
No 38
>PRK06256 biotin synthase; Validated
Probab=59.67 E-value=1.4e+02 Score=27.23 Aligned_cols=118 Identities=14% Similarity=0.096 Sum_probs=62.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEE-EcCCCCCCcH---HHHHHHHhhhhccCCCcceeeEEeecccCCCCCCCCHHHHHHHHH
Q 024446 108 IDRDDAVDAMLRYADAGLTTF-DMADHYGPAE---DLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESID 183 (267)
Q Consensus 108 ~~~~~~~~~l~~A~d~Gin~f-DTA~~YG~sE---~~lG~al~~~~~~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~l~ 183 (267)
.+.++..+.++.+.+.|++-| -.+..++... ..+-+.++..... . .+.+.+-.. ..+++.+
T Consensus 91 ~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~~~~~~~~~e~i~~i~~~-~-----~i~~~~~~g----~l~~e~l----- 155 (336)
T PRK06256 91 LDIEELIEAAKEAIEEGAGTFCIVASGRGPSGKEVDQVVEAVKAIKEE-T-----DLEICACLG----LLTEEQA----- 155 (336)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEecCCCCCchHHHHHHHHHHHHHhc-C-----CCcEEecCC----cCCHHHH-----
Confidence 577899999999999998533 2233333322 1334555543221 1 111111111 2344433
Q ss_pred HHHHHcCCCceeEEEEec-------CCCCCCCHHHHHHHHHHHHHcCCccE----EEecCCCHHHHHHHHH
Q 024446 184 VSRRRMDVPCLDMLQFHW-------WDYSNPGYLDALNHLTDLKEEGKIKT----VALTNFDTERLRIILE 243 (267)
Q Consensus 184 ~SL~rLg~d~iDl~~lH~-------pd~~~~~~~~~~~aL~~l~~~G~Ir~----iGvSn~~~~~l~~~~~ 243 (267)
+.|++.|++.+-+- +.. .... ..+++.+++++.+++.|.--. +|+ +.+.+++.+.+.
T Consensus 156 ~~LkeaG~~~v~~~-lEts~~~~~~i~~~-~t~~~~i~~i~~a~~~Gi~v~~~~I~Gl-gEt~ed~~~~~~ 223 (336)
T PRK06256 156 ERLKEAGVDRYNHN-LETSRSYFPNVVTT-HTYEDRIDTCEMVKAAGIEPCSGGIIGM-GESLEDRVEHAF 223 (336)
T ss_pred HHHHHhCCCEEecC-CccCHHHHhhcCCC-CCHHHHHHHHHHHHHcCCeeccCeEEeC-CCCHHHHHHHHH
Confidence 34777787755331 111 1111 237788999999999996322 344 566666655443
No 39
>PRK00208 thiG thiazole synthase; Reviewed
Probab=58.73 E-value=1.4e+02 Score=26.74 Aligned_cols=75 Identities=13% Similarity=0.073 Sum_probs=62.4
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCceeEEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcC
Q 024446 170 PVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENG 245 (267)
Q Consensus 170 ~~~~~~~~i~~~l~~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~g 245 (267)
....+.+...+-.+-..+-+++++|-|=.+.++....++..+++++.++|+++|.+ -+-+++-++...+++.+.|
T Consensus 70 aG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~-vlpyc~~d~~~ak~l~~~G 144 (250)
T PRK00208 70 AGCRTAEEAVRTARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFV-VLPYCTDDPVLAKRLEEAG 144 (250)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCE-EEEEeCCCHHHHHHHHHcC
Confidence 44678888888888888999999999998888887788899999999999999974 4456777888877777665
No 40
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=56.70 E-value=1.6e+02 Score=26.97 Aligned_cols=123 Identities=15% Similarity=0.101 Sum_probs=67.2
Q ss_pred CCHHHHHHHHHHHHHc-CCCEEEcCCCCCC----cHHHHHHHHhhhhccCCCcceeeEEeecccCCCCCCCCHHHHHHHH
Q 024446 108 IDRDDAVDAMLRYADA-GLTTFDMADHYGP----AEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESI 182 (267)
Q Consensus 108 ~~~~~~~~~l~~A~d~-Gin~fDTA~~YG~----sE~~lG~al~~~~~~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~l 182 (267)
.+.++..++++...+. ||+-+--+. |+ +..-+.+.++....- ..+..+.+.|+... ..+..+.+.+
T Consensus 119 l~~~e~~~~i~~i~~~~~I~~VilSG--GDPl~~~~~~L~~ll~~l~~i---~~v~~iri~Tr~~v----~~p~rit~el 189 (321)
T TIGR03822 119 LSPAELDAAFAYIADHPEIWEVILTG--GDPLVLSPRRLGDIMARLAAI---DHVKIVRFHTRVPV----ADPARVTPAL 189 (321)
T ss_pred CCHHHHHHHHHHHHhCCCccEEEEeC--CCcccCCHHHHHHHHHHHHhC---CCccEEEEeCCCcc----cChhhcCHHH
Confidence 4567777888776644 887553221 32 222344555443211 11224566776421 1223333344
Q ss_pred HHHHHHcCCCceeEEEEecCCCCCCCHHHHHHHHHHHHHcCCccEE------EecCCCHHHHHHHHH
Q 024446 183 DVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTV------ALTNFDTERLRIILE 243 (267)
Q Consensus 183 ~~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~aL~~l~~~G~Ir~i------GvSn~~~~~l~~~~~ 243 (267)
-+.|++.|.. ..+.+|...+..- .++++++++.|++.|..-.+ |+ |.+.+.+.++.+
T Consensus 190 l~~L~~~g~~--v~i~l~~~h~~el-~~~~~~ai~~L~~~Gi~v~~q~vLl~gv-Nd~~~~l~~l~~ 252 (321)
T TIGR03822 190 IAALKTSGKT--VYVALHANHAREL-TAEARAACARLIDAGIPMVSQSVLLRGV-NDDPETLAALMR 252 (321)
T ss_pred HHHHHHcCCc--EEEEecCCChhhc-CHHHHHHHHHHHHcCCEEEEEeeEeCCC-CCCHHHHHHHHH
Confidence 4566667742 3567787544332 47899999999999962211 43 577777665543
No 41
>PLN02363 phosphoribosylanthranilate isomerase
Probab=55.68 E-value=47 Score=29.62 Aligned_cols=74 Identities=12% Similarity=0.132 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHHHHHcCCCceeEEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEEec-CCCHHHHHHHHHcCCCEEEEe
Q 024446 174 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRIILENGIPVVSNQ 252 (267)
Q Consensus 174 ~~~~i~~~l~~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~aL~~l~~~G~Ir~iGvS-n~~~~~l~~~~~~g~~~~~~Q 252 (267)
+++.++.+ .++|.|++-+.+ .+.....--.+..+.+.+......++.+||- |-+++.+.++.+. .+++++|
T Consensus 56 ~~eda~~a-----~~~GaD~iGfIf--~~~SpR~Vs~e~a~~I~~~l~~~~~~~VgVfv~~~~~~I~~~~~~-~~ld~VQ 127 (256)
T PLN02363 56 SARDAAMA-----VEAGADFIGMIL--WPKSKRSISLSVAKEISQVAREGGAKPVGVFVDDDANTILRAADS-SDLELVQ 127 (256)
T ss_pred cHHHHHHH-----HHcCCCEEEEec--CCCCCCcCCHHHHHHHHHhccccCccEEEEEeCCCHHHHHHHHHh-cCCCEEE
Confidence 44555443 358999999964 3322111012344444444433247789996 7888888887765 4689999
Q ss_pred eeC
Q 024446 253 VQL 255 (267)
Q Consensus 253 ~~y 255 (267)
+.-
T Consensus 128 LHG 130 (256)
T PLN02363 128 LHG 130 (256)
T ss_pred ECC
Confidence 863
No 42
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=55.13 E-value=1.5e+02 Score=26.31 Aligned_cols=24 Identities=13% Similarity=0.339 Sum_probs=20.7
Q ss_pred CHHHHHHHHHHHHHcCCCEEEcCC
Q 024446 109 DRDDAVDAMLRYADAGLTTFDMAD 132 (267)
Q Consensus 109 ~~~~~~~~l~~A~d~Gin~fDTA~ 132 (267)
+.++..++++.-.+.||..|+...
T Consensus 20 s~~~k~~i~~~L~~~Gv~~IEvG~ 43 (262)
T cd07948 20 DTEDKIEIAKALDAFGVDYIELTS 43 (262)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEC
Confidence 458889999999999999999853
No 43
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=53.02 E-value=1.5e+02 Score=25.44 Aligned_cols=126 Identities=15% Similarity=0.167 Sum_probs=77.7
Q ss_pred HHHHHHHHcCCCEEEcCCCCCCcHHHHHHHHhhhhccCCCcceeeEEeecccCCCCCCCCHHHHHHHHH-----------
Q 024446 115 DAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESID----------- 183 (267)
Q Consensus 115 ~~l~~A~d~Gin~fDTA~~YG~sE~~lG~al~~~~~~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~l~----------- 183 (267)
++|..-++-|-+..|-..-.|. +-+.|++ ++. +... ....+++.+.++++
T Consensus 5 ~~I~~~I~pgsrVLDLGCGdG~----LL~~L~~---~k~------v~g~------GvEid~~~v~~cv~rGv~Viq~Dld 65 (193)
T PF07021_consen 5 QIIAEWIEPGSRVLDLGCGDGE----LLAYLKD---EKQ------VDGY------GVEIDPDNVAACVARGVSVIQGDLD 65 (193)
T ss_pred HHHHHHcCCCCEEEecCCCchH----HHHHHHH---hcC------CeEE------EEecCHHHHHHHHHcCCCEEECCHH
Confidence 4666778889999998654332 2344433 211 1111 11345566666644
Q ss_pred HHHHHcCCCceeEEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHH-cCCCEEEEeeeCCccCCCC
Q 024446 184 VSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILE-NGIPVVSNQVQLRIGKFIP 262 (267)
Q Consensus 184 ~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~-~g~~~~~~Q~~ysl~~r~~ 262 (267)
+-|....-+..|.+.+..-- .......+.|+++.+-|+--=|++.||..+..+.-+- .|.-|..-+++|+.+|...
T Consensus 66 ~gL~~f~d~sFD~VIlsqtL---Q~~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPN 142 (193)
T PF07021_consen 66 EGLADFPDQSFDYVILSQTL---QAVRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPN 142 (193)
T ss_pred HhHhhCCCCCccEEehHhHH---HhHhHHHHHHHHHHHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCC
Confidence 44444555555555554321 1123345557888888998889999999998876544 5766888999999888754
No 44
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=51.97 E-value=1.5e+02 Score=25.34 Aligned_cols=120 Identities=8% Similarity=0.094 Sum_probs=67.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEcC-CCCCC-cHHHHHHHHhhhhccCCCcceeeEEeecccCCCCCCCCHHHHHHHHHHH
Q 024446 108 IDRDDAVDAMLRYADAGLTTFDMA-DHYGP-AEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVS 185 (267)
Q Consensus 108 ~~~~~~~~~l~~A~d~Gin~fDTA-~~YG~-sE~~lG~al~~~~~~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~l~~S 185 (267)
++.++..++++.-.+.||..|+.. +..+. ..+.+.+..+..+.. .+.... ....+.++..++..
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~v~~~~~~~~~~-------~~~~~~-------~~~~~~i~~~~~~~ 76 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFASEDDFEQVRRLREALPNA-------RLQALC-------RANEEDIERAVEAA 76 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTSSHHHHHHHHHHHHHHHSS-------EEEEEE-------ESCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcccccCHHHHHHhhhhhhhhccc-------ccceee-------eehHHHHHHHHHhh
Confidence 577899999999999999999998 33332 222334333322211 221111 12456666666543
Q ss_pred HHHcCCCceeEEEEecCC-----CCC---CCHHHHHHHHHHHHHcCCccEEEecC---CCHHHHHHHH
Q 024446 186 RRRMDVPCLDMLQFHWWD-----YSN---PGYLDALNHLTDLKEEGKIKTVALTN---FDTERLRIIL 242 (267)
Q Consensus 186 L~rLg~d~iDl~~lH~pd-----~~~---~~~~~~~~aL~~l~~~G~Ir~iGvSn---~~~~~l~~~~ 242 (267)
...|.|.+.++.-=++- ... ...+...+.++.+++.|....++.-. ++++.+.++.
T Consensus 77 -~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~ 143 (237)
T PF00682_consen 77 -KEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELA 143 (237)
T ss_dssp -HHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHH
T ss_pred -HhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHH
Confidence 56788887776422210 000 00334556667777888888888744 5566655544
No 45
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=51.34 E-value=82 Score=28.49 Aligned_cols=72 Identities=14% Similarity=0.159 Sum_probs=45.5
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeEEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCC
Q 024446 173 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIP 247 (267)
Q Consensus 173 ~~~~~i~~~l~~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~g~~ 247 (267)
++.+... .+-+.|.++|+++|++-.++.|..- |...+.++.+..+.+...++...+. -+...++.+.+.|++
T Consensus 23 ~s~e~k~-~ia~~L~~~Gv~~IEvgsf~~p~~~-p~~~d~~e~~~~l~~~~~~~~~~l~-~~~~~ie~A~~~g~~ 94 (287)
T PRK05692 23 IPTADKI-ALIDRLSAAGLSYIEVASFVSPKWV-PQMADAAEVMAGIQRRPGVTYAALT-PNLKGLEAALAAGAD 94 (287)
T ss_pred cCHHHHH-HHHHHHHHcCCCEEEeCCCcCcccc-cccccHHHHHHhhhccCCCeEEEEe-cCHHHHHHHHHcCCC
Confidence 4444433 4556689999999999755555321 1123345666666555556666665 478888888887654
No 46
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=51.29 E-value=54 Score=28.19 Aligned_cols=66 Identities=14% Similarity=0.112 Sum_probs=40.8
Q ss_pred HHHcCCCceeEEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEEec-CCCHHHHHHHHHcCCCEEEEeeeC
Q 024446 186 RRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRIILENGIPVVSNQVQL 255 (267)
Q Consensus 186 L~rLg~d~iDl~~lH~pd~~~~~~~~~~~aL~~l~~~G~Ir~iGvS-n~~~~~l~~~~~~g~~~~~~Q~~y 255 (267)
..++|.|++-+.+ ++.....--.+..+.+.+.. .+.++.+||. |-+++.+.++.+. ..++++|+.-
T Consensus 19 ~~~~Gad~iGfI~--~~~S~R~V~~~~a~~i~~~~-~~~i~~VgVf~~~~~~~i~~~~~~-~~~d~vQLHg 85 (210)
T PRK01222 19 AAELGADAIGFVF--YPKSPRYVSPEQAAELAAAL-PPFVKVVGVFVNASDEEIDEIVET-VPLDLLQLHG 85 (210)
T ss_pred HHHcCCCEEEEcc--CCCCCCcCCHHHHHHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHh-cCCCEEEECC
Confidence 3468999999963 33221110123333333322 3568999998 6788888888765 4689999854
No 47
>PF14387 DUF4418: Domain of unknown function (DUF4418)
Probab=48.30 E-value=12 Score=29.66 Aligned_cols=25 Identities=28% Similarity=0.598 Sum_probs=16.0
Q ss_pred ccccccccchhhhhhHh-hHHhHHHH
Q 024446 3 AMHCHFTGRNFISKSLS-TFLPLLSI 27 (267)
Q Consensus 3 ~~~~~~~~~~~~~~~~~-~~~~~~~~ 27 (267)
.|.|||||+-.+-=++- .++.++.+
T Consensus 31 ~M~Ch~tg~a~~~ig~vi~~~~li~~ 56 (124)
T PF14387_consen 31 HMKCHWTGQAVTGIGAVIAVLSLIML 56 (124)
T ss_pred eeeehhHHHHHHHHHHHHHHHHHHHH
Confidence 68999999987554444 33444443
No 48
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=47.78 E-value=97 Score=26.30 Aligned_cols=69 Identities=16% Similarity=0.320 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHcCCCceeEEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCH----HHHHHHHHcCCCEEEE
Q 024446 176 SIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDT----ERLRIILENGIPVVSN 251 (267)
Q Consensus 176 ~~i~~~l~~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~aL~~l~~~G~Ir~iGvSn~~~----~~l~~~~~~g~~~~~~ 251 (267)
..+.+.+++.++.+|.+ ++++ .+...+ ..+..+.++++.++| +..|=++..++ +.++++.+.|+|+..+
T Consensus 14 ~~~~~g~~~~a~~~g~~-~~~~----~~~~~d-~~~q~~~i~~~i~~~-~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~ 86 (257)
T PF13407_consen 14 QQVIKGAKAAAKELGYE-VEIV----FDAQND-PEEQIEQIEQAISQG-VDGIIVSPVDPDSLAPFLEKAKAAGIPVVTV 86 (257)
T ss_dssp HHHHHHHHHHHHHHTCE-EEEE----EESTTT-HHHHHHHHHHHHHTT-ESEEEEESSSTTTTHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHHcCCE-EEEe----CCCCCC-HHHHHHHHHHHHHhc-CCEEEecCCCHHHHHHHHHHHhhcCceEEEE
Confidence 56888899999999975 3333 222222 577888899999888 88888886554 5677777778866553
No 49
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=47.78 E-value=2.1e+02 Score=25.68 Aligned_cols=131 Identities=15% Similarity=0.195 Sum_probs=77.8
Q ss_pred CHHHHHHHHHHHHHcC-CCEEEc-------C---CCCCCcHHHHHHHHhhhhccCCCcceeeEEeecccCCCCCCCCHHH
Q 024446 109 DRDDAVDAMLRYADAG-LTTFDM-------A---DHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSI 177 (267)
Q Consensus 109 ~~~~~~~~l~~A~d~G-in~fDT-------A---~~YG~sE~~lG~al~~~~~~r~~~~~~~v~i~tK~~~~~~~~~~~~ 177 (267)
+.++..++.+.+.+.| +..||- + ..|+...+++-+.++..... + ++-+.-|..+. .+.
T Consensus 102 ~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~----~--~~pv~vKl~~~-----~~~ 170 (301)
T PRK07259 102 TEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEV----V--KVPVIVKLTPN-----VTD 170 (301)
T ss_pred CHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHh----c--CCCEEEEcCCC-----chh
Confidence 5678888888888998 999976 1 12344556666666654322 1 33455565432 122
Q ss_pred HHHHHHHHHHHcCCCceeEEE-EecC--CCC--------------CCC-HHHHHHHHHHHHHcCCccEEEecC-CCHHHH
Q 024446 178 VRESIDVSRRRMDVPCLDMLQ-FHWW--DYS--------------NPG-YLDALNHLTDLKEEGKIKTVALTN-FDTERL 238 (267)
Q Consensus 178 i~~~l~~SL~rLg~d~iDl~~-lH~p--d~~--------------~~~-~~~~~~aL~~l~~~G~Ir~iGvSn-~~~~~l 238 (267)
+. .+-+.++..|.|.|++.= ++.. +.. .+. ..-.++.+.++++.=.+--||+.. .+++++
T Consensus 171 ~~-~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI~~~~da 249 (301)
T PRK07259 171 IV-EIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGISSAEDA 249 (301)
T ss_pred HH-HHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECCCCCHHHH
Confidence 22 233457788988887631 0110 000 000 012466667777765788999988 478899
Q ss_pred HHHHHcCCCEEEEee
Q 024446 239 RIILENGIPVVSNQV 253 (267)
Q Consensus 239 ~~~~~~g~~~~~~Q~ 253 (267)
.+++..| .+.+|+
T Consensus 250 ~~~l~aG--Ad~V~i 262 (301)
T PRK07259 250 IEFIMAG--ASAVQV 262 (301)
T ss_pred HHHHHcC--CCceeE
Confidence 9988776 467775
No 50
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=45.77 E-value=2.8e+02 Score=26.63 Aligned_cols=62 Identities=11% Similarity=0.197 Sum_probs=40.2
Q ss_pred CCCHHHHHHHHHHHHHHcCCCceeEEEEec-CCC-----------CCC-CHHH---HH-HHHHHHHHcCCccEEEecCCC
Q 024446 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHW-WDY-----------SNP-GYLD---AL-NHLTDLKEEGKIKTVALTNFD 234 (267)
Q Consensus 172 ~~~~~~i~~~l~~SL~rLg~d~iDl~~lH~-pd~-----------~~~-~~~~---~~-~aL~~l~~~G~Ir~iGvSn~~ 234 (267)
..+.+.+++.++..+ +++.++|++|.+.- |.. ..+ +.++ .+ .+.+.|.+.|. +.+++|||.
T Consensus 226 gqT~e~~~~~l~~~~-~l~~~~is~y~L~~~pgT~l~~~~~~g~l~~~~~~~~~~~my~~~~~~L~~~Gy-~~yeis~fa 303 (449)
T PRK09058 226 GQTPEIWQQDLAIVR-DLGLDGVDLYALNLLPGTPLAKAVEKGKLPPPATPAERADMYAYGVEFLAKAGW-RQLSNSHWA 303 (449)
T ss_pred CCCHHHHHHHHHHHH-hcCCCEEEEeccccCCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHCCC-eEEeeeeee
Confidence 457788888877765 48999999998773 221 011 1222 22 23456777887 568999987
Q ss_pred H
Q 024446 235 T 235 (267)
Q Consensus 235 ~ 235 (267)
.
T Consensus 304 r 304 (449)
T PRK09058 304 R 304 (449)
T ss_pred c
Confidence 5
No 51
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=45.21 E-value=2.6e+02 Score=26.02 Aligned_cols=137 Identities=14% Similarity=0.162 Sum_probs=82.6
Q ss_pred CcceeccccCCCCCC-----CCCHHHHHHHHHHHHH---cCCCEEEcCCCCCCcHHHHHHHHhhhhccCCCcceeeEEee
Q 024446 92 CRVLNGMWQTSGGWG-----RIDRDDAVDAMLRYAD---AGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGL 163 (267)
Q Consensus 92 s~LGlGt~~~g~~~~-----~~~~~~~~~~l~~A~d---~Gin~fDTA~~YG~sE~~lG~al~~~~~~r~~~~~~~v~i~ 163 (267)
..+|-=|.++- .|+ ..++++..+++....+ .=+-.+|..+..+.-...+-+.+. +.. -+.+.
T Consensus 28 ~~~C~RC~~l~-hy~~~~~~~~~~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~~----~~p-----iilV~ 97 (360)
T TIGR03597 28 EVYCQRCFRLK-HYNEIQDVELNDDDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFVG----GNP-----VLLVG 97 (360)
T ss_pred Ceeecchhhhh-ccCccccCCCCHHHHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHhC----CCC-----EEEEE
Confidence 45666666653 222 2456667676665542 224566865555431111222221 211 46788
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHHcCCCceeEEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHH
Q 024446 164 TKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRI 240 (267)
Q Consensus 164 tK~~~~~~~~~~~~i~~~l~~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~ 240 (267)
+|..-.+...+.+.+.+.+++.++..|....|++.+-.-. ...+++.++.+.++++.+.+--+|.+|.....+-.
T Consensus 98 NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~~vSAk~--g~gv~eL~~~l~~~~~~~~v~~vG~~nvGKStliN 172 (360)
T TIGR03597 98 NKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIILVSAKK--GNGIDELLDKIKKARNKKDVYVVGVTNVGKSSLIN 172 (360)
T ss_pred EchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEEEecCCC--CCCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHH
Confidence 9975433344566777777777788887545666654432 22378888888888777789999999999876544
No 52
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=44.96 E-value=1.7e+02 Score=25.28 Aligned_cols=135 Identities=12% Similarity=0.008 Sum_probs=73.8
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEcCCCCCCcHHHHHHHHhhhhccCCCcceeeEEeecccCCCCCCCCHHHHHHHHHHHH
Q 024446 107 RIDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSR 186 (267)
Q Consensus 107 ~~~~~~~~~~l~~A~d~Gin~fDTA~~YG~sE~~lG~al~~~~~~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~l~~SL 186 (267)
..++++..++++.|.+.|+.-+-..+.|= ....+.|+. . .+.+.|-...+....+.+.-...+++.+
T Consensus 14 ~~t~~~i~~lc~~A~~~~~~avcv~p~~v---~~a~~~l~~---~-------~v~v~tVigFP~G~~~~~~K~~E~~~Av 80 (211)
T TIGR00126 14 DTTEEDIITLCAQAKTYKFAAVCVNPSYV---PLAKELLKG---T-------EVRICTVVGFPLGASTTDVKLYETKEAI 80 (211)
T ss_pred CCCHHHHHHHHHHHHhhCCcEEEeCHHHH---HHHHHHcCC---C-------CCeEEEEeCCCCCCCcHHHHHHHHHHHH
Confidence 35789999999999999887666544332 223333421 1 3445554432222334444444445444
Q ss_pred HHcCCCceeEEEEecCCCCCCCHHHHHHHHHHHHHc--CCc-cEE-EecCCCHHHHHHHHHc--CCCEEEEeee--CC
Q 024446 187 RRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE--GKI-KTV-ALTNFDTERLRIILEN--GIPVVSNQVQ--LR 256 (267)
Q Consensus 187 ~rLg~d~iDl~~lH~pd~~~~~~~~~~~aL~~l~~~--G~I-r~i-GvSn~~~~~l~~~~~~--g~~~~~~Q~~--ys 256 (267)
++|.|-||+++--..-.. .++....+.+.+.++. |+. +-| =.+-.+.+++.++.+. ....++++.. |.
T Consensus 81 -~~GAdEiDvv~n~g~l~~-g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~~ei~~a~~ia~eaGADfvKTsTGf~ 156 (211)
T TIGR00126 81 -KYGADEVDMVINIGALKD-GNEEVVYDDIRAVVEACAGVLLKVIIETGLLTDEEIRKACEICIDAGADFVKTSTGFG 156 (211)
T ss_pred -HcCCCEEEeecchHhhhC-CcHHHHHHHHHHHHHHcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEeCCCCC
Confidence 579999999865432111 2356677777777764 542 222 1122444566555432 1235666665 54
No 53
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=44.73 E-value=1.7e+02 Score=26.16 Aligned_cols=78 Identities=10% Similarity=-0.002 Sum_probs=49.9
Q ss_pred CCHH-HHHHHHHHHHHcCCCEEEcCCCCCC---c-H--HHHHHHHhhhhccCCCcceeeEEeecccCCCCCCCCHHHHHH
Q 024446 108 IDRD-DAVDAMLRYADAGLTTFDMADHYGP---A-E--DLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRE 180 (267)
Q Consensus 108 ~~~~-~~~~~l~~A~d~Gin~fDTA~~YG~---s-E--~~lG~al~~~~~~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~ 180 (267)
.+++ +...+.+.+++.|..|+=|+.-|+. + | +++-+.+++.... . ...++.+.. -.+.+...+
T Consensus 143 L~~ee~i~~a~~~a~~aGADFVKTSTGf~~~gAt~edv~lm~~~i~~~~~~-~---~vgIKAsGG------Irt~~~A~~ 212 (257)
T PRK05283 143 LKDEALIRKASEIAIKAGADFIKTSTGKVPVNATLEAARIMLEVIRDMGVA-K---TVGFKPAGG------VRTAEDAAQ 212 (257)
T ss_pred cCCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHHHhcccC-C---CeeEEccCC------CCCHHHHHH
Confidence 3445 4888999999999999999998853 2 2 2222333221000 0 113333222 347788889
Q ss_pred HHHHHHHHcCCCcee
Q 024446 181 SIDVSRRRMDVPCLD 195 (267)
Q Consensus 181 ~l~~SL~rLg~d~iD 195 (267)
-++.--+.||.+|++
T Consensus 213 ~i~ag~~~lg~~~~~ 227 (257)
T PRK05283 213 YLALADEILGADWAD 227 (257)
T ss_pred HHHHHHHHhChhhcC
Confidence 999999999998766
No 54
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=43.72 E-value=1.9e+02 Score=24.93 Aligned_cols=73 Identities=15% Similarity=0.164 Sum_probs=47.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEcCCCCCC---c-HHHHHHHHhhhhccCCCcceeeEEeecccCCCCCCCCHHHHHHHHH
Q 024446 108 IDRDDAVDAMLRYADAGLTTFDMADHYGP---A-EDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESID 183 (267)
Q Consensus 108 ~~~~~~~~~l~~A~d~Gin~fDTA~~YG~---s-E~~lG~al~~~~~~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~l~ 183 (267)
.++++...+.+.+.+.|..|+=|+.-|+. + |. -+.+++.-.++ ..++.+.. -.+.+...+-++
T Consensus 129 L~~~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~d--v~~m~~~v~~~-----v~IKaaGG------irt~~~a~~~i~ 195 (211)
T TIGR00126 129 LTDEEIRKACEICIDAGADFVKTSTGFGAGGATVED--VRLMRNTVGDT-----IGVKASGG------VRTAEDAIAMIE 195 (211)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHH--HHHHHHHhccC-----CeEEEeCC------CCCHHHHHHHHH
Confidence 46678889999999999999999977752 1 21 12233322221 13443332 126788888888
Q ss_pred HHHHHcCCCc
Q 024446 184 VSRRRMDVPC 193 (267)
Q Consensus 184 ~SL~rLg~d~ 193 (267)
.--.|+|++.
T Consensus 196 aGa~riGts~ 205 (211)
T TIGR00126 196 AGASRIGASA 205 (211)
T ss_pred HhhHHhCcch
Confidence 8888998864
No 55
>PRK08609 hypothetical protein; Provisional
Probab=43.41 E-value=3.5e+02 Score=27.03 Aligned_cols=107 Identities=10% Similarity=0.030 Sum_probs=56.0
Q ss_pred HHHHHHHHHHcCCCEEEcCCCC-------CCcHHHHHHHH---hhhhccCCCcceeeEEeecccCCCCCCCCHHHHHHHH
Q 024446 113 AVDAMLRYADAGLTTFDMADHY-------GPAEDLYGIFI---NRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESI 182 (267)
Q Consensus 113 ~~~~l~~A~d~Gin~fDTA~~Y-------G~sE~~lG~al---~~~~~~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~l 182 (267)
..++++.|.+.|++.|=.++++ |.+..-+-..+ +...+.-. . ..+....-+.. .++...+-.
T Consensus 351 leemv~~A~~~Gl~~i~iTdH~~~~~~~~~~~~~~l~~~~~ei~~l~~~~~-~--i~Il~GiEv~i-----~~~g~~d~~ 422 (570)
T PRK08609 351 IEEMVEACIAKGYEYMAITDHSQYLKVANGLTEERLLEQAEEIKALNEKYP-E--IDILSGIEMDI-----LPDGSLDYD 422 (570)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCccccCCCCHHHHHHHHHHHHHHHHhcC-C--CeEEEEEEEee-----cCCcchhhc
Confidence 5569999999999999888885 22222122222 22221111 1 12332222211 111112222
Q ss_pred HHHHHHcCCCceeEEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEEecC
Q 024446 183 DVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN 232 (267)
Q Consensus 183 ~~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~aL~~l~~~G~Ir~iGvSn 232 (267)
+..|+. .||+ +.-+|++.. .+ .++.++.+.++.+.|.+.-||=-.
T Consensus 423 ~~~L~~--~D~v-I~SvH~~~~-~~-~~~~~~~l~~a~~~~~~dILaHpd 467 (570)
T PRK08609 423 DEVLAE--LDYV-IAAIHSSFS-QS-EEEIMKRLENACRNPYVRLIAHPT 467 (570)
T ss_pred HHHHHh--hCEE-EEEeecCCC-CC-HHHHHHHHHHHhcCCCceEEECCC
Confidence 334443 5666 777786532 22 466778888888888877776544
No 56
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=40.94 E-value=2e+02 Score=25.34 Aligned_cols=42 Identities=12% Similarity=0.111 Sum_probs=30.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEcCCCC-----CCcHHHHHHHHhh
Q 024446 106 GRIDRDDAVDAMLRYADAGLTTFDMADHY-----GPAEDLYGIFINR 147 (267)
Q Consensus 106 ~~~~~~~~~~~l~~A~d~Gin~fDTA~~Y-----G~sE~~lG~al~~ 147 (267)
|+-+.++..++++.|.+.|++-+=..++| .++...+.+.+.+
T Consensus 15 Gp~s~eesl~ml~~A~~qGvt~iVaTsHh~~g~y~n~~~~v~~~~~~ 61 (254)
T COG4464 15 GPKSLEESLAMLREAVRQGVTKIVATSHHLHGRYENPIEKVKEKANQ 61 (254)
T ss_pred CCCcHHHHHHHHHHHHHcCceEEeecccccCCccCChHHHHHHHHHH
Confidence 45678999999999999999977666555 2455555555544
No 57
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=40.46 E-value=1.5e+02 Score=26.74 Aligned_cols=75 Identities=15% Similarity=0.019 Sum_probs=52.1
Q ss_pred CCCCCHHHHHHHHHHHHHHc------CCCceeEEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHH
Q 024446 170 PVKMTSSIVRESIDVSRRRM------DVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILE 243 (267)
Q Consensus 170 ~~~~~~~~i~~~l~~SL~rL------g~d~iDl~~lH~pd~~~~~~~~~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~ 243 (267)
...++.+...+..+-..+-. ++++|-|=.+.++....|+..+++++-+.|+++|-+-. --++-++-..+++.+
T Consensus 78 aGc~tA~EAv~~A~laRe~~~~~~~~~~~wIKLEVi~D~~~LlPD~~etl~Aae~Lv~eGF~Vl-PY~~~D~v~a~rLed 156 (267)
T CHL00162 78 AGCQTAEEAIRMAFLGRELAKQLGQEDNNFVKLEVISDPKYLLPDPIGTLKAAEFLVKKGFTVL-PYINADPMLAKHLED 156 (267)
T ss_pred cCCCCHHHHHHHHHHHHHHhccccccCCCeEEEEEeCCCcccCCChHHHHHHHHHHHHCCCEEe-ecCCCCHHHHHHHHH
Confidence 34567776666666666655 78888888777777777788999999999999996432 233344444556665
Q ss_pred cC
Q 024446 244 NG 245 (267)
Q Consensus 244 ~g 245 (267)
.|
T Consensus 157 ~G 158 (267)
T CHL00162 157 IG 158 (267)
T ss_pred cC
Confidence 54
No 58
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=40.03 E-value=95 Score=26.86 Aligned_cols=64 Identities=11% Similarity=0.075 Sum_probs=40.7
Q ss_pred HHHcCCCceeEEEEecCCCCCCCHHHHHHHHHHHHHcCC-ccEEEec-CCCHHHHHHHHHcCCCEEEEeeeC
Q 024446 186 RRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK-IKTVALT-NFDTERLRIILENGIPVVSNQVQL 255 (267)
Q Consensus 186 L~rLg~d~iDl~~lH~pd~~~~~~~~~~~aL~~l~~~G~-Ir~iGvS-n~~~~~l~~~~~~g~~~~~~Q~~y 255 (267)
...+|.||+-+.+.-. .+..- ..+...++.+.-. ++.+||. |.+.+.+.++.+. .+++.+|+.-
T Consensus 18 a~~~gad~iG~If~~~-SpR~V----s~~~a~~i~~~v~~~~~VgVf~n~~~~~i~~i~~~-~~ld~VQlHG 83 (208)
T COG0135 18 AAKAGADYIGFIFVPK-SPRYV----SPEQAREIASAVPKVKVVGVFVNESIEEILEIAEE-LGLDAVQLHG 83 (208)
T ss_pred HHHcCCCEEEEEEcCC-CCCcC----CHHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHh-cCCCEEEECC
Confidence 3468999988764331 22212 2233344444444 8899998 5777888888765 4789999853
No 59
>TIGR02811 formate_TAT formate dehydrogenase region TAT target. Members of this uncharacterized protein family are all small, extending 70 or fewer residues from their respective likely start codons. All have the twin-arginine-dependent tranport (TAT) signal sequence at the N-terminus and a conserved 20-residue C-terminal region that includes the motif Y-[HRK]-X-[TS]-X-H-[IV]-X-X-[YF]-Y. The TAT signal sequence suggests a bound cofactor. All members are encoded near genes for subunits of formate dehydrogenase, and may themselves be a subunit or accessory protein.
Probab=39.40 E-value=27 Score=24.50 Aligned_cols=11 Identities=18% Similarity=0.172 Sum_probs=8.4
Q ss_pred hHHhHHHHHHH
Q 024446 20 TFLPLLSIVQT 30 (267)
Q Consensus 20 ~~~~~~~~~~~ 30 (267)
.||+.|++.+.
T Consensus 13 ~Flk~lg~~aa 23 (66)
T TIGR02811 13 DLLKGLGVGAA 23 (66)
T ss_pred HHHHHHHHHHH
Confidence 89999887443
No 60
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=38.72 E-value=2.1e+02 Score=23.11 Aligned_cols=62 Identities=11% Similarity=0.116 Sum_probs=43.6
Q ss_pred eeeEEeecccCCCCCCCCHHHHHHHHHHHHHHc--CCCceeEEEEecCCCCCCCHHHHHHHHHHHHHc
Q 024446 157 LDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRM--DVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 222 (267)
Q Consensus 157 ~~~v~i~tK~~~~~~~~~~~~i~~~l~~SL~rL--g~d~iDl~~lH~pd~~~~~~~~~~~aL~~l~~~ 222 (267)
+..+.++-|++. ...+..+++.+.++.+.. .....|++++...... .++.+..+.|.++.++
T Consensus 47 RlG~sVSKKvg~---AV~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~~-~~f~~L~~~l~~~~~~ 110 (138)
T PRK00730 47 KVGITVSKKFGK---AHQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNSQ-PDFLKLLQDFLQQIPE 110 (138)
T ss_pred eEEEEEeccccc---chhHHHHHHHHHHHHHHhhcccCCceEEEEeccccC-CCHHHHHHHHHHHHHH
Confidence 445666667532 456788888888888766 3457899999998766 5577777777766544
No 61
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=38.43 E-value=3e+02 Score=25.70 Aligned_cols=25 Identities=8% Similarity=0.238 Sum_probs=20.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEcCC
Q 024446 108 IDRDDAVDAMLRYADAGLTTFDMAD 132 (267)
Q Consensus 108 ~~~~~~~~~l~~A~d~Gin~fDTA~ 132 (267)
++.++..++++.-.+.||..|+...
T Consensus 19 ~s~~~k~~ia~~L~~~Gv~~IEvG~ 43 (363)
T TIGR02090 19 LTVEQKVEIARKLDELGVDVIEAGF 43 (363)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 3558888999999999999999753
No 62
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=37.47 E-value=3.5e+02 Score=25.29 Aligned_cols=116 Identities=13% Similarity=0.070 Sum_probs=67.9
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEcCCCCCCcHHHHHHHHhhhhcc---------------------CCCcceeeEEeecc
Q 024446 107 RIDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRE---------------------RPPEFLDKVRGLTK 165 (267)
Q Consensus 107 ~~~~~~~~~~l~~A~d~Gin~fDTA~~YG~sE~~lG~al~~~~~~---------------------r~~~~~~~v~i~tK 165 (267)
..+.+.-.++.+.|-+.|+-+|-|-..+...+. |.+..-+ .+ .+-++|-
T Consensus 86 ~~p~e~~~~Lke~a~~~Gi~~~SSPfd~~svd~-----l~~~~~~ayKIaS~E~~~~plik~iA~~~k-----PiIlSTG 155 (347)
T COG2089 86 ETPLEWHAQLKEYARKRGIIFFSSPFDLTAVDL-----LESLNPPAYKIASGEINDLPLIKYIAKKGK-----PIILSTG 155 (347)
T ss_pred cCCHHHHHHHHHHHHHcCeEEEecCCCHHHHHH-----HHhcCCCeEEecCccccChHHHHHHHhcCC-----CEEEEcc
Confidence 356677788999999999999977655443221 1211111 00 1223333
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHcCCCceeEEEEecCCCCCCCHHH-HHHHHHHHHHcCCccEEEecCCCHHHHHHHH
Q 024446 166 WVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLD-ALNHLTDLKEEGKIKTVALTNFDTERLRIIL 242 (267)
Q Consensus 166 ~~~~~~~~~~~~i~~~l~~SL~rLg~d~iDl~~lH~pd~~~~~~~~-~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~ 242 (267)
. .+-+.+.++++..+++=.- |+.++|....-...+++ -+.+|-.|++.= ---||+|.|+...+..+.
T Consensus 156 m------a~~~ei~~av~~~r~~g~~---~i~LLhC~s~YPap~ed~NL~~i~~l~~~F-n~~vGlSDHT~g~~a~l~ 223 (347)
T COG2089 156 M------ATIEEIEEAVAILRENGNP---DIALLHCTSAYPAPFEDVNLKAIPKLAEAF-NAIVGLSDHTLGILAPLA 223 (347)
T ss_pred c------ccHHHHHHHHHHHHhcCCC---CeEEEEecCCCCCCHHHhhHHHHHHHHHHh-CCccccccCccchhHHHH
Confidence 2 3557788888776665443 99999985432211333 344444444443 457999999988554433
No 63
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=37.04 E-value=3e+02 Score=24.43 Aligned_cols=70 Identities=14% Similarity=0.114 Sum_probs=44.4
Q ss_pred CCCHHHHHHHHHHHHHHcCCCceeEEEEecCCCCCCCHHHHHHHHHHHHHcCC-ccEEEecCCCHHHHHHHHHcCCCEE
Q 024446 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK-IKTVALTNFDTERLRIILENGIPVV 249 (267)
Q Consensus 172 ~~~~~~i~~~l~~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~aL~~l~~~G~-Ir~iGvSn~~~~~l~~~~~~g~~~~ 249 (267)
.++.+...+-++ .|.++|++.|.+-. |... .+.++..+.+.+.++ .+-.+....+.+.++.+.+.|++..
T Consensus 18 ~~s~~~k~~i~~-~L~~~Gv~~IEvG~---P~~~----~~~~~~~~~l~~~~~~~~v~~~~r~~~~di~~a~~~g~~~i 88 (262)
T cd07948 18 FFDTEDKIEIAK-ALDAFGVDYIELTS---PAAS----PQSRADCEAIAKLGLKAKILTHIRCHMDDARIAVETGVDGV 88 (262)
T ss_pred CCCHHHHHHHHH-HHHHcCCCEEEEEC---CCCC----HHHHHHHHHHHhCCCCCcEEEEecCCHHHHHHHHHcCcCEE
Confidence 355555555444 49999999988873 5332 234445555554444 4456667788889999988876543
No 64
>PRK15108 biotin synthase; Provisional
Probab=36.98 E-value=3e+02 Score=25.52 Aligned_cols=71 Identities=13% Similarity=0.134 Sum_probs=44.4
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeEEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEEecC--CCHHHHHHHHHcCCC
Q 024446 173 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN--FDTERLRIILENGIP 247 (267)
Q Consensus 173 ~~~~~i~~~l~~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~aL~~l~~~G~Ir~iGvSn--~~~~~l~~~~~~g~~ 247 (267)
.+++.|.+.++. ...+|+..+ .....+.++....++...+.+..+++.|. .+-+|+ -+.+.++++.+.|+.
T Consensus 76 ls~eEI~~~a~~-~~~~G~~~i-~i~~~g~~p~~~~~e~i~~~i~~ik~~~i--~v~~s~G~ls~e~l~~LkeAGld 148 (345)
T PRK15108 76 MEVEQVLESARK-AKAAGSTRF-CMGAAWKNPHERDMPYLEQMVQGVKAMGL--ETCMTLGTLSESQAQRLANAGLD 148 (345)
T ss_pred CCHHHHHHHHHH-HHHcCCCEE-EEEecCCCCCcchHHHHHHHHHHHHhCCC--EEEEeCCcCCHHHHHHHHHcCCC
Confidence 577888877765 556888887 33333323322225666677777777664 344555 667888888877653
No 65
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=36.92 E-value=1.3e+02 Score=28.69 Aligned_cols=76 Identities=24% Similarity=0.348 Sum_probs=51.7
Q ss_pred HHHHHHHHcCCCceeEEEEecCCCCCCCHHHHHHHHHHHHHcCCccEE--------------EecCCCHHHHHHHHHcCC
Q 024446 181 SIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTV--------------ALTNFDTERLRIILENGI 246 (267)
Q Consensus 181 ~l~~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~aL~~l~~~G~Ir~i--------------GvSn~~~~~l~~~~~~g~ 246 (267)
++++..++|.-.-.+.+.+|.-.. -=++||+|.++|.+..+ |+....+++++.+.+.|+
T Consensus 199 ~V~~~~~~Le~~G~Ev~VFHAtG~-------GG~aME~Li~~G~~~~VlDlTttEl~d~l~GGv~sagp~Rl~AA~~~GI 271 (403)
T PF06792_consen 199 CVDAIRERLEEEGYEVLVFHATGT-------GGRAMERLIREGQFDGVLDLTTTELADELFGGVLSAGPDRLEAAARAGI 271 (403)
T ss_pred HHHHHHHHHHhcCCeEEEEcCCCC-------chHHHHHHHHcCCcEEEEECcHHHHHHHHhCCCCCCCchHHHHHHHcCC
Confidence 344444444444468999997642 23578999999998876 888888999999998887
Q ss_pred CEEE-----EeeeCCccCCCCc
Q 024446 247 PVVS-----NQVQLRIGKFIPF 263 (267)
Q Consensus 247 ~~~~-----~Q~~ysl~~r~~e 263 (267)
|-.+ ..+.|-+.+.-||
T Consensus 272 P~Vvs~GalDmVnFg~~~tvPe 293 (403)
T PF06792_consen 272 PQVVSPGALDMVNFGPPDTVPE 293 (403)
T ss_pred CEEEecCccceeccCCcccCCH
Confidence 6443 4455555444443
No 66
>PF06174 DUF987: Protein of unknown function (DUF987); InterPro: IPR009329 This is a family of bacterial proteins that are related to the hypothetical protein YeeT.
Probab=35.92 E-value=13 Score=25.66 Aligned_cols=9 Identities=56% Similarity=1.357 Sum_probs=8.0
Q ss_pred ccccccchh
Q 024446 5 HCHFTGRNF 13 (267)
Q Consensus 5 ~~~~~~~~~ 13 (267)
-||||||.+
T Consensus 35 ~~hYtg~~V 43 (66)
T PF06174_consen 35 VCHYTGRDV 43 (66)
T ss_pred cccccCccc
Confidence 499999987
No 67
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=34.79 E-value=3.8e+02 Score=24.92 Aligned_cols=75 Identities=12% Similarity=0.037 Sum_probs=60.0
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCceeEEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcC
Q 024446 170 PVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENG 245 (267)
Q Consensus 170 ~~~~~~~~i~~~l~~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~g 245 (267)
...++.+...+..+-..+-.++++|-|=.+.......++..+++++.++|+++|..-. =+++-++...+++.+.|
T Consensus 144 ag~~ta~eAv~~a~lare~~~~~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~-~yc~~d~~~a~~l~~~g 218 (326)
T PRK11840 144 AGCYTAEEAVRTLRLAREAGGWDLVKLEVLGDAKTLYPDMVETLKATEILVKEGFQVM-VYCSDDPIAAKRLEDAG 218 (326)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHhcC
Confidence 4467888888888888888899999988777766666778999999999999998543 46667777777777665
No 68
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=34.61 E-value=74 Score=29.59 Aligned_cols=113 Identities=16% Similarity=0.151 Sum_probs=51.7
Q ss_pred HHHcCCCEEEcCCCCCCcHHHHHHHHhhhhccCCCcceeeEEeecccCCCC-CCCCHHHHHHHHHHHHHHcCCCceeEEE
Q 024446 120 YADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPP-VKMTSSIVRESIDVSRRRMDVPCLDMLQ 198 (267)
Q Consensus 120 A~d~Gin~fDTA~~YG~sE~~lG~al~~~~~~r~~~~~~~v~i~tK~~~~~-~~~~~~~i~~~l~~SL~rLg~d~iDl~~ 198 (267)
.-+.|+.|.|.. |. .-..++=......+-+|..+++ .|.. ...+.+.+.+-.++ -+.+|.+-+ +=
T Consensus 12 ~E~~G~~f~~~~---G~----~~d~~~ilk~~G~N~vRlRvwv----~P~~~g~~~~~~~~~~akr-ak~~Gm~vl--ld 77 (332)
T PF07745_consen 12 MEAAGVKFYDEN---GQ----EKDLFQILKDHGVNAVRLRVWV----NPYDGGYNDLEDVIALAKR-AKAAGMKVL--LD 77 (332)
T ss_dssp HHHTT---B-TT---SS----B--HHHHHHHTT--EEEEEE-S----S-TTTTTTSHHHHHHHHHH-HHHTT-EEE--EE
T ss_pred HHHcCCeEECCC---CC----CCCHHHHHHhcCCCeEEEEecc----CCcccccCCHHHHHHHHHH-HHHCCCeEE--Ee
Confidence 346688877743 32 2466654444433222332221 1222 34566776665554 356675432 34
Q ss_pred EecC----CCCCCCHHHHHHH--HHHHHHcCCccEEEecCCCHHHHHHHHHcCCCEEEEee
Q 024446 199 FHWW----DYSNPGYLDALNH--LTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQV 253 (267)
Q Consensus 199 lH~p----d~~~~~~~~~~~a--L~~l~~~G~Ir~iGvSn~~~~~l~~~~~~g~~~~~~Q~ 253 (267)
+|.- ||.....-..|+. +.+|.++ |.+|+.+.|.++.+.|+.|+.+|+
T Consensus 78 fHYSD~WaDPg~Q~~P~aW~~~~~~~l~~~-------v~~yT~~vl~~l~~~G~~pd~VQV 131 (332)
T PF07745_consen 78 FHYSDFWADPGKQNKPAAWANLSFDQLAKA-------VYDYTKDVLQALKAAGVTPDMVQV 131 (332)
T ss_dssp E-SSSS--BTTB-B--TTCTSSSHHHHHHH-------HHHHHHHHHHHHHHTT--ESEEEE
T ss_pred ecccCCCCCCCCCCCCccCCCCCHHHHHHH-------HHHHHHHHHHHHHHCCCCccEEEe
Confidence 5643 3322212234433 2444444 677888888888888999999998
No 69
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=34.29 E-value=3e+02 Score=23.90 Aligned_cols=120 Identities=13% Similarity=0.063 Sum_probs=66.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEcCCCCCCcHHHHHHHHhhhhccCCCcceeeEEeecccCCCCCCCCHHHHHHHHHHHH
Q 024446 107 RIDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSR 186 (267)
Q Consensus 107 ~~~~~~~~~~l~~A~d~Gin~fDTA~~YG~sE~~lG~al~~~~~~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~l~~SL 186 (267)
..++++..++++.|.+.|+.-+-..+.|- .+..+.|++ . .+.+.|-...+......+.-....++.+
T Consensus 18 ~~t~~~i~~~~~~A~~~~~~avcv~p~~v---~~a~~~l~~---~-------~v~v~tVigFP~G~~~~~~K~~e~~~Ai 84 (221)
T PRK00507 18 EATEEDIDKLCDEAKEYGFASVCVNPSYV---KLAAELLKG---S-------DVKVCTVIGFPLGANTTAVKAFEAKDAI 84 (221)
T ss_pred CCCHHHHHHHHHHHHHhCCeEEEECHHHH---HHHHHHhCC---C-------CCeEEEEecccCCCChHHHHHHHHHHHH
Confidence 35789999999999998887776655432 122333321 1 3444444322111222222223333333
Q ss_pred HHcCCCceeEEEEecCCCCCCCHHHHHHHHHHHHHc--CCccEEEe---cC-CCHHHHHHHHH
Q 024446 187 RRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE--GKIKTVAL---TN-FDTERLRIILE 243 (267)
Q Consensus 187 ~rLg~d~iDl~~lH~pd~~~~~~~~~~~aL~~l~~~--G~Ir~iGv---Sn-~~~~~l~~~~~ 243 (267)
..|.+-+|++ +........+++.+.+.+.++++. |+ .+=| +. .+.+++.++.+
T Consensus 85 -~~GA~EiD~V-in~~~~~~g~~~~v~~ei~~v~~~~~~~--~lKvIlEt~~L~~e~i~~a~~ 143 (221)
T PRK00507 85 -ANGADEIDMV-INIGALKSGDWDAVEADIRAVVEAAGGA--VLKVIIETCLLTDEEKVKACE 143 (221)
T ss_pred -HcCCceEeee-ccHHHhcCCCHHHHHHHHHHHHHhcCCc--eEEEEeecCcCCHHHHHHHHH
Confidence 4789999965 454333444577788888888874 43 3333 33 45666665544
No 70
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=34.07 E-value=4.6e+02 Score=25.63 Aligned_cols=82 Identities=21% Similarity=0.209 Sum_probs=55.6
Q ss_pred CCCHHHHHHHHHHHHHHcCCCceeEEEEecCCCCCCCHHHHHHHHHHHHH----cCCccEEEec--CCCHHHHHHHHHcC
Q 024446 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKE----EGKIKTVALT--NFDTERLRIILENG 245 (267)
Q Consensus 172 ~~~~~~i~~~l~~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~aL~~l~~----~G~Ir~iGvS--n~~~~~l~~~~~~g 245 (267)
..+++.|.+.++. ++..|...+-|+ -.-++...+++...+.+..+++ .|.++.|+|+ ..+.++++++.+.|
T Consensus 114 ~Ls~EEI~~ea~~-~~~~G~~~i~Lv--sGe~p~~~~~eyi~e~i~~I~~~~~~~g~i~~v~inig~lt~eey~~LkeaG 190 (469)
T PRK09613 114 KLTQEEIREEVKA-LEDMGHKRLALV--AGEDPPNCDIEYILESIKTIYSTKHGNGEIRRVNVNIAPTTVENYKKLKEAG 190 (469)
T ss_pred ECCHHHHHHHHHH-HHHCCCCEEEEE--eCCCCCCCCHHHHHHHHHHHHHhccccCcceeeEEEeecCCHHHHHHHHHcC
Confidence 4678999998875 577998877664 2222222236666677777775 5778777775 46788899999888
Q ss_pred CC-EEEEeeeCC
Q 024446 246 IP-VVSNQVQLR 256 (267)
Q Consensus 246 ~~-~~~~Q~~ys 256 (267)
+. ..++|=-||
T Consensus 191 v~~~~l~qETY~ 202 (469)
T PRK09613 191 IGTYQLFQETYH 202 (469)
T ss_pred CCEEEeccccCC
Confidence 63 566666555
No 71
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=33.48 E-value=2.8e+02 Score=23.03 Aligned_cols=110 Identities=10% Similarity=0.038 Sum_probs=64.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEEcCCCCCCcHHHHHHHHhhhhccCCCcceeeEEeecccCCCCCCCCHHHHHHHHHHHHHH
Q 024446 109 DRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRR 188 (267)
Q Consensus 109 ~~~~~~~~l~~A~d~Gin~fDTA~~YG~sE~~lG~al~~~~~~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~l~~SL~r 188 (267)
+.++..+.++.+++.|++.|.....-.+....+.+.-+.++ ++.+.--. -.+++.+...+ .
T Consensus 14 ~~~~~~~~~~~l~~~G~~~vev~~~~~~~~~~i~~l~~~~~---------~~~iGag~-----v~~~~~~~~a~-----~ 74 (190)
T cd00452 14 DAEDALALAEALIEGGIRAIEITLRTPGALEAIRALRKEFP---------EALIGAGT-----VLTPEQADAAI-----A 74 (190)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHCC---------CCEEEEEe-----CCCHHHHHHHH-----H
Confidence 57889999999999999999877654544444444333221 12211100 12345554433 3
Q ss_pred cCCCceeEEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCEEEEee
Q 024446 189 MDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQV 253 (267)
Q Consensus 189 Lg~d~iDl~~lH~pd~~~~~~~~~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~g~~~~~~Q~ 253 (267)
+|.|++ |.|... .+.. +..++.|.-.-+|++ +.+++.++.+.| .+++++
T Consensus 75 ~Ga~~i-----~~p~~~----~~~~---~~~~~~~~~~i~gv~--t~~e~~~A~~~G--ad~i~~ 123 (190)
T cd00452 75 AGAQFI-----VSPGLD----PEVV---KAANRAGIPLLPGVA--TPTEIMQALELG--ADIVKL 123 (190)
T ss_pred cCCCEE-----EcCCCC----HHHH---HHHHHcCCcEECCcC--CHHHHHHHHHCC--CCEEEE
Confidence 777655 666432 2233 344445666678888 667788887765 355554
No 72
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=33.35 E-value=1.7e+02 Score=24.76 Aligned_cols=90 Identities=18% Similarity=0.263 Sum_probs=54.2
Q ss_pred HcCCCEEEcCCC--------C-CCcHHHHHHHHhhhhccCCCcceeeEEeec----ccCCC-----CCCCCHHHHHHHHH
Q 024446 122 DAGLTTFDMADH--------Y-GPAEDLYGIFINRVRRERPPEFLDKVRGLT----KWVPP-----PVKMTSSIVRESID 183 (267)
Q Consensus 122 d~Gin~fDTA~~--------Y-G~sE~~lG~al~~~~~~r~~~~~~~v~i~t----K~~~~-----~~~~~~~~i~~~l~ 183 (267)
..+|-|+||-.. | |..+.++-..|++.+- ++.+.. .|... ++.-++..+..-++
T Consensus 78 a~~v~fiDTD~itT~~~~~~y~gr~~P~~~~~i~~~r~--------DL~lLl~p~t~wvaDG~R~~~~~~~R~~F~~~l~ 149 (187)
T COG3172 78 ANKVAFIDTDFLTTQAFCKKYEGREHPFLQALIAEYRF--------DLTLLLEPNTPWVADGLRSLGSSVQRQEFQNLLE 149 (187)
T ss_pred CCceEEEeccHHHHHHHHHHHcccCCchHHHHHhhccc--------ceEEEcCCCCceeCCCccccccHhHHHHHHHHHH
Confidence 459999999543 3 4345555555654322 333333 22211 22346677888899
Q ss_pred HHHHHcCCCceeEEEEecCCCCCCCHHHHHHHHHHHHHcC
Q 024446 184 VSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG 223 (267)
Q Consensus 184 ~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~aL~~l~~~G 223 (267)
+.|++-+..|+-+ ..++...- +..++++.+++..++
T Consensus 150 ~~L~~~~~~~v~i---~~~~y~eR-~~~~~~aV~ell~~~ 185 (187)
T COG3172 150 QMLEENNIPFVVI---EGEDYLER-YLQAVEAVEELLGEK 185 (187)
T ss_pred HHHHHhCCcEEEE---cCCCHHHH-HHHHHHHHHHHHhcc
Confidence 9999988777544 44443322 566888888888776
No 73
>PRK06740 histidinol-phosphatase; Validated
Probab=33.08 E-value=3.9e+02 Score=24.59 Aligned_cols=52 Identities=12% Similarity=0.125 Sum_probs=33.8
Q ss_pred HHHHHHHHHcCCCceeEEEEecCCC---CCCC-------------HHHHHHHHHHHHHcCCccEEEecC
Q 024446 180 ESIDVSRRRMDVPCLDMLQFHWWDY---SNPG-------------YLDALNHLTDLKEEGKIKTVALTN 232 (267)
Q Consensus 180 ~~l~~SL~rLg~d~iDl~~lH~pd~---~~~~-------------~~~~~~aL~~l~~~G~Ir~iGvSn 232 (267)
..+++.|+....||+ +.-+|+.+. ..++ +++-++.+.++.+.|++..||=-.
T Consensus 156 ~~~~~~l~~~~~Dyv-IgSVH~i~g~~~~~~~~~~~~~~~~~~~~~~~Yf~~~~~~i~~~~fdvIgHpD 223 (331)
T PRK06740 156 QELQSLLALGDFDYV-IGSVHFLNGWGFDNPDTKEYFEEHDLYALYDTFFKTVECAIRSELFDIIAHLD 223 (331)
T ss_pred HHHHHHHhcCCCCEE-EEeeeEeCCcCCCCccHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCCEeeCcc
Confidence 345566777788888 888897531 1111 122456778888999988888553
No 74
>PRK08392 hypothetical protein; Provisional
Probab=32.66 E-value=3.1e+02 Score=23.27 Aligned_cols=104 Identities=13% Similarity=0.085 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHcCCCEEEcCCCCC-----CcHHHHHHHHhhhhccCCCcceeeEEeecccCCCCCCCCHHHHHHHHHHHH
Q 024446 112 DAVDAMLRYADAGLTTFDMADHYG-----PAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSR 186 (267)
Q Consensus 112 ~~~~~l~~A~d~Gin~fDTA~~YG-----~sE~~lG~al~~~~~~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~l~~SL 186 (267)
...+.++.|.+.|++.|=.+++.- +-+..+.+ +++.... . . ..+....-+... ++. .+..++.+
T Consensus 15 ~~~e~v~~A~~~Gl~~i~iTdH~~~~~~~~~~~y~~~-i~~l~~~-~-~--i~il~GiE~~~~-----~~~-~~~~~~~~ 83 (215)
T PRK08392 15 SVRDNIAEAERKGLRLVGISDHIHYFTPSKFNAYINE-IRQWGEE-S-E--IVVLAGIEANIT-----PNG-VDITDDFA 83 (215)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCCccchhhHHHHHHH-HHHHhhc-c-C--ceEEEeEEeeec-----CCc-chhHHHHH
Confidence 366899999999999997776642 11122221 1121111 1 1 123322222111 111 12333444
Q ss_pred HHcCCCceeEEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEEe
Q 024446 187 RRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVAL 230 (267)
Q Consensus 187 ~rLg~d~iDl~~lH~pd~~~~~~~~~~~aL~~l~~~G~Ir~iGv 230 (267)
+ ..||+ +.-+|.+.. .+..++-++.+.++.+.|.+.-+|=
T Consensus 84 ~--~~D~v-I~SvH~~~~-~~~~~~Y~~~~~~~~~~~~~dvlgH 123 (215)
T PRK08392 84 K--KLDYV-IASVHEWFG-RPEHHEYIELVKLALMDENVDIIGH 123 (215)
T ss_pred h--hCCEE-EEEeecCcC-CcHHHHHHHHHHHHHhcCCCCEEeC
Confidence 4 35776 777885422 2225667778888888898777765
No 75
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=32.52 E-value=4.1e+02 Score=24.64 Aligned_cols=28 Identities=14% Similarity=0.107 Sum_probs=19.4
Q ss_pred CCCHHHHHHHHHHHHHHcCCCceeEEEEe
Q 024446 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFH 200 (267)
Q Consensus 172 ~~~~~~i~~~l~~SL~rLg~d~iDl~~lH 200 (267)
..+.+.+++.++..+ +++.+++.+|.+.
T Consensus 171 gqt~~~~~~tl~~~~-~l~~~~i~~y~l~ 198 (375)
T PRK05628 171 GESDDDWRASLDAAL-EAGVDHVSAYALI 198 (375)
T ss_pred CCCHHHHHHHHHHHH-hcCCCEEEeeeee
Confidence 456777777776544 5888888887765
No 76
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=32.38 E-value=1.9e+02 Score=24.30 Aligned_cols=66 Identities=12% Similarity=0.059 Sum_probs=39.6
Q ss_pred HHHHcCCCceeEEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEEecC-CCHHHHHHHHHcCCCEEEEeeeCC
Q 024446 185 SRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN-FDTERLRIILENGIPVVSNQVQLR 256 (267)
Q Consensus 185 SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~aL~~l~~~G~Ir~iGvSn-~~~~~l~~~~~~g~~~~~~Q~~ys 256 (267)
.+..+|.||+-+. ++|..... -..+...++.+.-.-+.+||-- -+.+.+.+..+. .+++++|+.-+
T Consensus 14 ~~~~~g~d~~Gfi--~~~~S~R~---v~~~~a~~l~~~~~~~~VgVf~~~~~~~I~~~~~~-~~ld~vQLHG~ 80 (197)
T PF00697_consen 14 LAAELGADYLGFI--FYPKSPRY---VSPDQARELVSAVPPKIVGVFVNQSPEEILEIVEE-LGLDVVQLHGD 80 (197)
T ss_dssp HHHHHTSSEEEEE----TTCTTB-----HHHHHHHHCCSSSSEEEEESSS-HHHHHHHHHH-CTESEEEE-SG
T ss_pred HHHHcCCCEEeee--cCCCCCCc---cCHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHH-cCCCEEEECCC
Confidence 4567899998886 44542222 1333445665555555899874 566677777665 57999998543
No 77
>PRK04390 rnpA ribonuclease P; Reviewed
Probab=32.11 E-value=2.4e+02 Score=21.86 Aligned_cols=64 Identities=13% Similarity=0.031 Sum_probs=41.9
Q ss_pred eeeEEeecccCCCCCCCCHHHHHHHHHHHHHHcC--CCceeEEEEecCCCCCCCHHHHHHHHHHHHHc
Q 024446 157 LDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMD--VPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 222 (267)
Q Consensus 157 ~~~v~i~tK~~~~~~~~~~~~i~~~l~~SL~rLg--~d~iDl~~lH~pd~~~~~~~~~~~aL~~l~~~ 222 (267)
+..+.++-|.... ...+..+++.+.+..+... ++..|++++..+.....++.+..+.|.+|.+.
T Consensus 45 R~G~~VsKK~~~~--AV~RNRiKR~lRE~~R~~~~~l~~~DiVvi~r~~~~~~~~~~l~~~l~~ll~k 110 (120)
T PRK04390 45 RLGLVVGKKTAKR--AVERNYMKRVIREWFRLNQHRLPPVDFVVRVQRKFDRATAKQAVAELAQLMAK 110 (120)
T ss_pred eEEEEEecccCcc--hhhhhHHHHHHHHHHHhccccCCCceEEEEeCCCcccCCHHHHHHHHHHHHHH
Confidence 3456666664432 3467778888888876543 23579999999876655577777666666543
No 78
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=32.04 E-value=3.5e+02 Score=23.69 Aligned_cols=68 Identities=9% Similarity=0.057 Sum_probs=45.4
Q ss_pred CCCHHHHHHHHHHHHHHcCCCceeEEEEecCCCCCCCHHHHHHHHHHHHHcC-CccEEEecCCCHHHHHHHHHcCCC
Q 024446 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG-KIKTVALTNFDTERLRIILENGIP 247 (267)
Q Consensus 172 ~~~~~~i~~~l~~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~aL~~l~~~G-~Ir~iGvSn~~~~~l~~~~~~g~~ 247 (267)
.++.+...+ +-+.|.++|+++|++-+ |... +.-|+.++++.+.+ .++..+.+..+.+.++.+.+.|++
T Consensus 16 ~~~~~~k~~-i~~~L~~~Gv~~iE~g~---p~~~----~~~~e~~~~l~~~~~~~~~~~~~r~~~~~v~~a~~~g~~ 84 (259)
T cd07939 16 AFSREEKLA-IARALDEAGVDEIEVGI---PAMG----EEEREAIRAIVALGLPARLIVWCRAVKEDIEAALRCGVT 84 (259)
T ss_pred CCCHHHHHH-HHHHHHHcCCCEEEEec---CCCC----HHHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHhCCcC
Confidence 455555554 44559999999999962 3221 22355667776643 477888887888899888877654
No 79
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=31.75 E-value=3.5e+02 Score=25.84 Aligned_cols=61 Identities=15% Similarity=0.174 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeEEEEec-CCC----------CCCCHH---HHHHH-HHHHHHcCCccEEEecCCCH
Q 024446 173 MTSSIVRESIDVSRRRMDVPCLDMLQFHW-WDY----------SNPGYL---DALNH-LTDLKEEGKIKTVALTNFDT 235 (267)
Q Consensus 173 ~~~~~i~~~l~~SL~rLg~d~iDl~~lH~-pd~----------~~~~~~---~~~~a-L~~l~~~G~Ir~iGvSn~~~ 235 (267)
.+.+.+.+.+++.+ .|+.|+|.+|.+-. |.. ..|+.+ +.++. .+.|.+.|. +.+|+|||..
T Consensus 201 QT~~~~~~~l~~a~-~l~pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~~Gy-~~yeisnfa~ 276 (416)
T COG0635 201 QTLESLKEDLEQAL-ELGPDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEKAGY-RQYEISNFAK 276 (416)
T ss_pred CCHHHHHHHHHHHH-hCCCCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHHCCC-cEEeechhcC
Confidence 35566666666554 46788888887753 211 122222 34433 345667777 9999999987
No 80
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=31.65 E-value=1.6e+02 Score=27.90 Aligned_cols=80 Identities=14% Similarity=0.103 Sum_probs=45.0
Q ss_pred CCCCCCcHHHHHHHHhhhhccCCCcceeeEEeecccCC--------CCCCCCH----HHHHHHHHHHHHHcCCCceeEEE
Q 024446 131 ADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVP--------PPVKMTS----SIVRESIDVSRRRMDVPCLDMLQ 198 (267)
Q Consensus 131 A~~YG~sE~~lG~al~~~~~~r~~~~~~~v~i~tK~~~--------~~~~~~~----~~i~~~l~~SL~rLg~d~iDl~~ 198 (267)
+.-+...+..+.+.+++.+.+ -+|+.||... .+..+++ +.|++.+.+.|++-|+...-+|+
T Consensus 123 s~rf~~ndv~La~~i~~~gK~-------fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~gv~~P~VFL 195 (376)
T PF05049_consen 123 SERFTENDVQLAKEIQRMGKK-------FYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKAGVSEPQVFL 195 (376)
T ss_dssp SSS--HHHHHHHHHHHHTT-E-------EEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCTT-SS--EEE
T ss_pred CCCCchhhHHHHHHHHHcCCc-------EEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHcCCCcCceEE
Confidence 444455666778888765433 5678888642 1224444 46777788888999999999999
Q ss_pred EecCCCCCCCHHHHHHHHH
Q 024446 199 FHWWDYSNPGYLDALNHLT 217 (267)
Q Consensus 199 lH~pd~~~~~~~~~~~aL~ 217 (267)
+-+.+...-++....++|+
T Consensus 196 VS~~dl~~yDFp~L~~tL~ 214 (376)
T PF05049_consen 196 VSSFDLSKYDFPKLEETLE 214 (376)
T ss_dssp B-TTTTTSTTHHHHHHHHH
T ss_pred EeCCCcccCChHHHHHHHH
Confidence 9998776545544444444
No 81
>PRK03031 rnpA ribonuclease P; Reviewed
Probab=31.61 E-value=2.5e+02 Score=21.82 Aligned_cols=64 Identities=14% Similarity=0.070 Sum_probs=44.6
Q ss_pred eeeEEeecccCCCCCCCCHHHHHHHHHHHHHHcCC---CceeEEEEecCCCCCCCHHHHHHHHHHHHHc
Q 024446 157 LDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDV---PCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 222 (267)
Q Consensus 157 ~~~v~i~tK~~~~~~~~~~~~i~~~l~~SL~rLg~---d~iDl~~lH~pd~~~~~~~~~~~aL~~l~~~ 222 (267)
+..+.++-|.... ...+..+++.+.+..+.+.. ...|++++-.+.....++.+..+.|..|.+.
T Consensus 48 R~G~~VsKK~~~~--AV~RNriKR~lRe~~R~~~~~l~~g~diVvi~r~~~~~~~~~~l~~~l~~ll~k 114 (122)
T PRK03031 48 RFGISISQKVSKK--AVVRNRIKRQIRAALRQLLPRIAPGWDLVIIVKPTAAECNYEQFLQELEQLLIQ 114 (122)
T ss_pred EEEEEEecccccc--hhhhhHHHHHHHHHHHHhhhccCCCceEEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 4455566664422 45677888888888876632 3589999999877666688888888777654
No 82
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=31.19 E-value=2.2e+02 Score=20.99 Aligned_cols=67 Identities=12% Similarity=0.035 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHcCCCceeEEEEecCCC-----CCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHH
Q 024446 176 SIVRESIDVSRRRMDVPCLDMLQFHWWDY-----SNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIIL 242 (267)
Q Consensus 176 ~~i~~~l~~SL~rLg~d~iDl~~lH~pd~-----~~~~~~~~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~ 242 (267)
..-.+++++.++.+|..-.++|+.-.+-. +.|+.+......-.+...|.++.-=+--++++++.+++
T Consensus 19 ~~R~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i~~~G~v~~et~~a~~~~e~~~~~ 90 (91)
T PF08734_consen 19 PDRAEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAIRSSGNVRTETLRAFPWDEFDEIV 90 (91)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHHHcCCceEEEEEecCCHHHHHHHh
Confidence 44566788888999999888887755421 23456677778888999999988777778888887765
No 83
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=31.12 E-value=3.8e+02 Score=23.82 Aligned_cols=108 Identities=14% Similarity=0.035 Sum_probs=54.7
Q ss_pred HHHHHHHHc--CCCEEEcCCCCC-CcHHHHHHHHhhhhccCCCcceeeEEeecccCCCCCCCCHHHHHHHHHH---HHHH
Q 024446 115 DAMLRYADA--GLTTFDMADHYG-PAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDV---SRRR 188 (267)
Q Consensus 115 ~~l~~A~d~--Gin~fDTA~~YG-~sE~~lG~al~~~~~~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~l~~---SL~r 188 (267)
+++++|++. |...|-....-. ..+.+ -+.++++.- .+.+..- .......+.+...+.+++ .+.+
T Consensus 80 ~v~eaaL~~~~G~~iINsIs~~~~~~~~~-~~l~~~~g~--------~vv~m~~-~~~g~P~t~~~~~~~l~~~v~~a~~ 149 (261)
T PRK07535 80 AAIEAGLKVAKGPPLINSVSAEGEKLEVV-LPLVKKYNA--------PVVALTM-DDTGIPKDAEDRLAVAKELVEKADE 149 (261)
T ss_pred HHHHHHHHhCCCCCEEEeCCCCCccCHHH-HHHHHHhCC--------CEEEEec-CCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 466677776 877776554321 12333 345554322 1222111 000001133333333333 3446
Q ss_pred cCCCceeEEEEecCCCC-----CCCHHHHHHHHHHHHHc--CCccEEEecCCC
Q 024446 189 MDVPCLDMLQFHWWDYS-----NPGYLDALNHLTDLKEE--GKIKTVALTNFD 234 (267)
Q Consensus 189 Lg~d~iDl~~lH~pd~~-----~~~~~~~~~aL~~l~~~--G~Ir~iGvSn~~ 234 (267)
.|++.=|+++ +|... .....++++.++.+++. |.=-.+|+||-+
T Consensus 150 ~GI~~~~Iil--DPgi~~~~~~~~~~~~~l~~i~~l~~~~pg~p~l~G~Sn~S 200 (261)
T PRK07535 150 YGIPPEDIYI--DPLVLPLSAAQDAGPEVLETIRRIKELYPKVHTTCGLSNIS 200 (261)
T ss_pred cCCCHhHEEE--eCCCCcccCChHHHHHHHHHHHHHHHhCCCCCEEEEeCCCc
Confidence 6886434432 22111 11245678889999988 999999999954
No 84
>TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase.
Probab=30.06 E-value=4.7e+02 Score=24.57 Aligned_cols=134 Identities=13% Similarity=0.086 Sum_probs=69.9
Q ss_pred CCHHHHHHHHHHHHHcCCC-EEEcCCCCCCcHHHHHHHHhhhhc---cCCCcceeeEEeecccCCC--CCCCCHHHHHHH
Q 024446 108 IDRDDAVDAMLRYADAGLT-TFDMADHYGPAEDLYGIFINRVRR---ERPPEFLDKVRGLTKWVPP--PVKMTSSIVRES 181 (267)
Q Consensus 108 ~~~~~~~~~l~~A~d~Gin-~fDTA~~YG~sE~~lG~al~~~~~---~r~~~~~~~v~i~tK~~~~--~~~~~~~~i~~~ 181 (267)
.+.+....+.+.+...|++ +++|... ...+. +-++++.... +........+.+-.-+... .....++.+++-
T Consensus 74 ~~~e~~~~~~~~~~~~GvTt~l~t~~t-~~~~~-~~~~l~~~~~~~~~~~~a~~lG~HlEGPfi~~~~~Gah~~~~i~~p 151 (380)
T TIGR00221 74 ASFETLEIMSERLPKSGCTSFLPTLIT-QPDEN-IKQAVKNMREYLAKEKNAQALGLHLEGPFLSPEKKGAHPPEYIREP 151 (380)
T ss_pred CCHHHHHHHHHHHHhcCeeEEeeeccC-CCHHH-HHHHHHHHHHHHhccCCceeeeEeeecCcCChhhcCCCCHHHhhCc
Confidence 3567788888888899997 5666532 22233 3444543321 1000001111111111110 112344454432
Q ss_pred HHHHHHHcC---CCceeEEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCEE
Q 024446 182 IDVSRRRMD---VPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVV 249 (267)
Q Consensus 182 l~~SL~rLg---~d~iDl~~lH~pd~~~~~~~~~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~g~~~~ 249 (267)
=.+-+++|- -+.+-++-+ -|+.+ ...+.++.|+++|.+-++|=||-+.+++.++.+.|..-.
T Consensus 152 ~~~~~~~~~~~~~~~i~~vTl---APE~~---~~~~~i~~l~~~gi~vs~GHs~A~~~~~~~a~~~Ga~~~ 216 (380)
T TIGR00221 152 DVELFKKFLCEAGGVITKVTL---APEED---QHFELIRHLKDAGIIVSAGHTNATYELAKAAFKAGATHA 216 (380)
T ss_pred CHHHHHHHHHhcCCCEEEEEE---CCCCC---ChHHHHHHHHHCCeEEEeeCCCCCHHHHHHHHHcCCCee
Confidence 222222221 122333322 22323 355667899999999999999999999999998875433
No 85
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=29.46 E-value=4.1e+02 Score=23.65 Aligned_cols=122 Identities=8% Similarity=0.014 Sum_probs=60.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEcCCC------C---CC-cHHHHHHHHhhhhccCCCcceeeEEeecccCCCCCCCCHHH
Q 024446 108 IDRDDAVDAMLRYADAGLTTFDMADH------Y---GP-AEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSI 177 (267)
Q Consensus 108 ~~~~~~~~~l~~A~d~Gin~fDTA~~------Y---G~-sE~~lG~al~~~~~~r~~~~~~~v~i~tK~~~~~~~~~~~~ 177 (267)
.+.++..++.....+.|+..|+...- + +. .++.+.++-+..++. ........+..+ ....-|..
T Consensus 18 ~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~~~-----~l~~~~r~~~~~-~~~~~p~~ 91 (275)
T cd07937 18 MRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKAMPNT-----PLQMLLRGQNLV-GYRHYPDD 91 (275)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHhCCCC-----ceehhccccccc-CccCCCcH
Confidence 46678888888888999999998641 1 11 223333332221111 001111111111 11122333
Q ss_pred H-HHHHHHHHHHcCCCceeEEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEEe-----cCCCHHHHHHHH
Q 024446 178 V-RESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVAL-----TNFDTERLRIIL 242 (267)
Q Consensus 178 i-~~~l~~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~aL~~l~~~G~Ir~iGv-----Sn~~~~~l~~~~ 242 (267)
+ +..++.+ ...|+|.|-++. | ..+ ++...+.++.+++.|+.-.+.+ +.++++.+.++.
T Consensus 92 ~~~~di~~~-~~~g~~~iri~~---~--~~~-~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~ 155 (275)
T cd07937 92 VVELFVEKA-AKNGIDIFRIFD---A--LND-VRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLA 155 (275)
T ss_pred HHHHHHHHH-HHcCCCEEEEee---c--CCh-HHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHH
Confidence 3 3333333 344666555532 2 122 6667778888888887544444 346666655443
No 86
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=28.99 E-value=4.7e+02 Score=24.19 Aligned_cols=24 Identities=8% Similarity=0.147 Sum_probs=20.9
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEcC
Q 024446 108 IDRDDAVDAMLRYADAGLTTFDMA 131 (267)
Q Consensus 108 ~~~~~~~~~l~~A~d~Gin~fDTA 131 (267)
++.++..++++...+.||..|+..
T Consensus 22 f~~~~~~~i~~~L~~aGv~~IEvg 45 (337)
T PRK08195 22 YTLEQVRAIARALDAAGVPVIEVT 45 (337)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEee
Confidence 456889999999999999999983
No 87
>PRK07945 hypothetical protein; Provisional
Probab=28.96 E-value=4.6e+02 Score=24.14 Aligned_cols=107 Identities=7% Similarity=-0.090 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHcCCCEEEcCCCCC-------CcHHHHHHHHhh---hhccCCCcceeeEEeecccCCCCCCCCHHHHHH
Q 024446 111 DDAVDAMLRYADAGLTTFDMADHYG-------PAEDLYGIFINR---VRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRE 180 (267)
Q Consensus 111 ~~~~~~l~~A~d~Gin~fDTA~~YG-------~sE~~lG~al~~---~~~~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~ 180 (267)
....+.+++|++.|+..+=.+++.- -+..-+-+.++. .+..-. . +++...--+...+ +...+..
T Consensus 111 ~~~ee~v~~Ai~~Gl~~i~~TDH~p~~~~~~~~~~~~l~~y~~~i~~l~~ky~-~--I~Il~GiE~d~~~-~g~~~~~-- 184 (335)
T PRK07945 111 SPIEEMARTAAALGHEYCALTDHSPRLTVANGLSAERLRKQLDVVAELNEELA-P--FRILTGIEVDILD-DGSLDQE-- 184 (335)
T ss_pred CCHHHHHHHHHHCCCCEEEEeCCCCCccCCCCCCHHHHHHHHHHHHHHHHhcC-C--ceEEEEeEecccC-CCCcchh--
Confidence 3467899999999999987776631 111112222222 111101 1 1222222111110 1112222
Q ss_pred HHHHHHHHcCCCceeEEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEEe
Q 024446 181 SIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVAL 230 (267)
Q Consensus 181 ~l~~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~aL~~l~~~G~Ir~iGv 230 (267)
++.|+. .||+ +.-+|+.... +..+..+.+.++.+.+++.-+|=
T Consensus 185 --~~~l~~--~D~v-IgSvH~~~~~--~~~~~~~~l~~ai~~~~~dvlgH 227 (335)
T PRK07945 185 --PELLDR--LDVV-VASVHSKLRM--DAAAMTRRMLAAVANPHTDVLGH 227 (335)
T ss_pred --HHHHHh--CCEE-EEEeecCCCC--CHHHHHHHHHHHhcCCCCeEEec
Confidence 223333 5766 7778875322 24556677777788888877774
No 88
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=28.96 E-value=1.7e+02 Score=24.32 Aligned_cols=74 Identities=12% Similarity=0.017 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEEcCCCCCCcHHHHHHHHhhhhccCCCcceeeEEeecccCCCCCCCCHHHHHHHHHHHHHH
Q 024446 109 DRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRR 188 (267)
Q Consensus 109 ~~~~~~~~l~~A~d~Gin~fDTA~~YG~sE~~lG~al~~~~~~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~l~~SL~r 188 (267)
+++..+-++++|-+.||.+|=.|..||.+-...-+.+++ + .++.+.|.-. ....-+...+.+.++.-|+.
T Consensus 12 T~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg---~------lkvVvVthh~-Gf~e~g~~e~~~E~~~~L~e 81 (186)
T COG1751 12 TDETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEG---D------LKVVVVTHHA-GFEEKGTQEMDEEVRKELKE 81 (186)
T ss_pred hHHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhccc---C------ceEEEEEeec-ccccCCceecCHHHHHHHHH
Confidence 455667788899999999999999999754433444432 1 1333333211 11122334566677888888
Q ss_pred cCCC
Q 024446 189 MDVP 192 (267)
Q Consensus 189 Lg~d 192 (267)
.|.+
T Consensus 82 rGa~ 85 (186)
T COG1751 82 RGAK 85 (186)
T ss_pred cCce
Confidence 8864
No 89
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=28.61 E-value=2.2e+02 Score=20.31 Aligned_cols=55 Identities=15% Similarity=0.201 Sum_probs=36.4
Q ss_pred HHcCCCceeEEEEecCCCCCCCHHHHHHHHHHHHHcC-CccEEEecCCC-HHHHHHHHHcC
Q 024446 187 RRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG-KIKTVALTNFD-TERLRIILENG 245 (267)
Q Consensus 187 ~rLg~d~iDl~~lH~pd~~~~~~~~~~~aL~~l~~~G-~Ir~iGvSn~~-~~~l~~~~~~g 245 (267)
+.+.....|++++-...+... ..+.++++++.+ .++-|-+++.. .....++.+.|
T Consensus 37 ~~~~~~~~d~iiid~~~~~~~----~~~~~~~i~~~~~~~~ii~~t~~~~~~~~~~~~~~g 93 (112)
T PF00072_consen 37 ELLKKHPPDLIIIDLELPDGD----GLELLEQIRQINPSIPIIVVTDEDDSDEVQEALRAG 93 (112)
T ss_dssp HHHHHSTESEEEEESSSSSSB----HHHHHHHHHHHTTTSEEEEEESSTSHHHHHHHHHTT
T ss_pred HHhcccCceEEEEEeeecccc----ccccccccccccccccEEEecCCCCHHHHHHHHHCC
Confidence 334444599999987544433 445556677666 88899998754 45666777765
No 90
>PRK10508 hypothetical protein; Provisional
Probab=28.51 E-value=99 Score=28.57 Aligned_cols=22 Identities=14% Similarity=0.120 Sum_probs=19.7
Q ss_pred CCHHHHHHHHHHHHHHcCCCce
Q 024446 173 MTSSIVRESIDVSRRRMDVPCL 194 (267)
Q Consensus 173 ~~~~~i~~~l~~SL~rLg~d~i 194 (267)
.+|+.+.+.+++..+++|+|.+
T Consensus 286 Gtpe~V~~kl~~l~~~~g~del 307 (333)
T PRK10508 286 GDKAKVRHGLQSILRETQADEI 307 (333)
T ss_pred eCHHHHHHHHHHHHHHHCcCEE
Confidence 5889999999999999998877
No 91
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=27.98 E-value=4.9e+02 Score=24.10 Aligned_cols=130 Identities=15% Similarity=0.087 Sum_probs=71.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEcCCCCCCcHHHHHHHHhhhhcc---------------------CCCcceeeEEeeccc
Q 024446 108 IDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRE---------------------RPPEFLDKVRGLTKW 166 (267)
Q Consensus 108 ~~~~~~~~~l~~A~d~Gin~fDTA~~YG~sE~~lG~al~~~~~~---------------------r~~~~~~~v~i~tK~ 166 (267)
.+.++...+.+.+-+.|+.||=|...-. +- +.+.+..-+ .+ .+.++|-
T Consensus 73 l~~e~~~~L~~~~~~~Gi~~~stpfd~~-sv----d~l~~~~v~~~KIaS~~~~n~pLL~~~A~~gk-----PvilStG- 141 (329)
T TIGR03569 73 LSEEDHRELKEYCESKGIEFLSTPFDLE-SA----DFLEDLGVPRFKIPSGEITNAPLLKKIARFGK-----PVILSTG- 141 (329)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEeCCHH-HH----HHHHhcCCCEEEECcccccCHHHHHHHHhcCC-----cEEEECC-
Confidence 5678888999999999999997653211 11 222221111 11 2233332
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCCceeEEEEecCCC-CCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHH--H
Q 024446 167 VPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDY-SNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIIL--E 243 (267)
Q Consensus 167 ~~~~~~~~~~~i~~~l~~SL~rLg~d~iDl~~lH~pd~-~~~~~~~~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~--~ 243 (267)
-.+.+.+..+++...+. |.+.-|+.++|.... ..+...--+.++..|++.=. .-||.|.|+........ .
T Consensus 142 -----matl~Ei~~Av~~i~~~-G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~~f~-~pVG~SdHt~G~~~~~aAva 214 (329)
T TIGR03569 142 -----MATLEEIEAAVGVLRDA-GTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKEAFD-LPVGYSDHTLGIEAPIAAVA 214 (329)
T ss_pred -----CCCHHHHHHHHHHHHHc-CCCcCcEEEEEECCCCCCCcccCCHHHHHHHHHHhC-CCEEECCCCccHHHHHHHHH
Confidence 23678888888887643 432225889998542 11211123445555554332 47999999876543322 2
Q ss_pred cCCCEEEEeeeCCc
Q 024446 244 NGIPVVSNQVQLRI 257 (267)
Q Consensus 244 ~g~~~~~~Q~~ysl 257 (267)
.| -.+++-.+.+
T Consensus 215 lG--A~iIEkH~tl 226 (329)
T TIGR03569 215 LG--ATVIEKHFTL 226 (329)
T ss_pred cC--CCEEEeCCCh
Confidence 34 3366655554
No 92
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=27.96 E-value=3.7e+02 Score=22.64 Aligned_cols=69 Identities=16% Similarity=0.187 Sum_probs=42.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEcCCCCCC------cHHHHHHHHhhhhccCCCcceeeEEeecccCCCCCCCCHHHHHHH
Q 024446 108 IDRDDAVDAMLRYADAGLTTFDMADHYGP------AEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRES 181 (267)
Q Consensus 108 ~~~~~~~~~l~~A~d~Gin~fDTA~~YG~------sE~~lG~al~~~~~~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~ 181 (267)
.++++...+.+.|.+.|..|+=|+.-|.. .-+.+.+.++ .+ ..++++... .+.+.+.+-
T Consensus 128 l~~~~i~~a~ria~e~GaD~IKTsTG~~~~~at~~~v~~~~~~~~----~~-----v~ik~aGGi------kt~~~~l~~ 192 (203)
T cd00959 128 LTDEEIIKACEIAIEAGADFIKTSTGFGPGGATVEDVKLMKEAVG----GR-----VGVKAAGGI------RTLEDALAM 192 (203)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhC----CC-----ceEEEeCCC------CCHHHHHHH
Confidence 35678889999999999999999976652 1123333332 11 133433221 156667766
Q ss_pred HHHHHHHcCC
Q 024446 182 IDVSRRRMDV 191 (267)
Q Consensus 182 l~~SL~rLg~ 191 (267)
++.-..|+|+
T Consensus 193 ~~~g~~riG~ 202 (203)
T cd00959 193 IEAGATRIGT 202 (203)
T ss_pred HHhChhhccC
Confidence 6666666665
No 93
>PRK10200 putative racemase; Provisional
Probab=27.59 E-value=4e+02 Score=23.07 Aligned_cols=69 Identities=13% Similarity=0.023 Sum_probs=48.0
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeEEEEecCCCC----------CCC-HHHHHHHHHHHHHcCCccEEEecCCCHHHHHHH
Q 024446 173 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS----------NPG-YLDALNHLTDLKEEGKIKTVALTNFDTERLRII 241 (267)
Q Consensus 173 ~~~~~i~~~l~~SL~rLg~d~iDl~~lH~pd~~----------~~~-~~~~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~ 241 (267)
.+.+..++-++..-.+.+.|+.|.+.+|+++.. .++ .....+.++.|.+.| ++.|-+...++....+.
T Consensus 14 aT~~~~~~i~~~t~a~~d~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~L~~~g-~~~iviaCNTah~~~~~ 92 (230)
T PRK10200 14 STIPYYRLINEGIKQRLGGLHSAQLLLHSVDFHEIEECQRRGEWDKTGDILAEAALGLQRAG-AEGIVLCTNTMHKVADA 92 (230)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCeEEEeCCChHHHHHHHHCCCcchHHHHHHHHHHHHHHcC-CCEEEECCchHHHHHHH
Confidence 355677777777778888899999999987531 111 334556667777777 79999998776654443
Q ss_pred H
Q 024446 242 L 242 (267)
Q Consensus 242 ~ 242 (267)
+
T Consensus 93 l 93 (230)
T PRK10200 93 I 93 (230)
T ss_pred H
Confidence 3
No 94
>COG1820 NagA N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]
Probab=27.41 E-value=2.7e+02 Score=26.44 Aligned_cols=37 Identities=19% Similarity=0.264 Sum_probs=31.8
Q ss_pred HHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCE
Q 024446 212 ALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPV 248 (267)
Q Consensus 212 ~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~g~~~ 248 (267)
..+....|++.|.+-++|=||-+.++.+++.+.|...
T Consensus 175 ~~e~i~~l~~~giivs~GHS~Atye~~~~a~~~Ga~~ 211 (380)
T COG1820 175 TKELIRLLANAGIVVSIGHSNATYEQARAAFEAGATF 211 (380)
T ss_pred CHHHHHHHHhCCeEEEecCccccHHHHHHHHHhCccE
Confidence 5566688999999999999999999999999887543
No 95
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=27.41 E-value=2.2e+02 Score=28.67 Aligned_cols=67 Identities=9% Similarity=-0.061 Sum_probs=41.7
Q ss_pred HHcCCCceeEEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEEec-CCCHHHHHHHHHcCCCEEEEeeeC
Q 024446 187 RRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRIILENGIPVVSNQVQL 255 (267)
Q Consensus 187 ~rLg~d~iDl~~lH~pd~~~~~~~~~~~aL~~l~~~G~Ir~iGvS-n~~~~~l~~~~~~g~~~~~~Q~~y 255 (267)
..+|.|++-+.+... .+..-+.+.....+.+....-.++.|||- |-+++.+.++.+. ..++++|+.-
T Consensus 20 ~~~gaD~iGfIf~~~-SpR~V~~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~~-~~ld~vQLHG 87 (610)
T PRK13803 20 VDMLPDFIGFIFYEK-SPRFVGNKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSKK-NGIDFVQLHG 87 (610)
T ss_pred HHcCCCEEEEEecCC-CCCCCCHHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHHh-cCCCEEEECC
Confidence 458999999975442 11111133313333333333357889995 7888898888765 4689999864
No 96
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=27.19 E-value=1.1e+02 Score=24.13 Aligned_cols=44 Identities=11% Similarity=0.055 Sum_probs=27.3
Q ss_pred HHHHHHHHHHcCCCceeEEEEecCCCCCCCHHHHHHHHHHHHHc
Q 024446 179 RESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 222 (267)
Q Consensus 179 ~~~l~~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~aL~~l~~~ 222 (267)
+..+++.|+.+.-..+|.++++.+|.-.-+..+....++.|.+.
T Consensus 54 Rp~l~~ll~~~~~g~vd~vvv~~ldRl~R~~~d~~~~~~~l~~~ 97 (140)
T cd03770 54 RPGFNRMIEDIEAGKIDIVIVKDMSRLGRNYLKVGLYMEILFPK 97 (140)
T ss_pred CHHHHHHHHHHHcCCCCEEEEeccchhccCHHHHHHHHHHHHhh
Confidence 34455555555556778888887765443355666666777666
No 97
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=27.08 E-value=98 Score=23.69 Aligned_cols=27 Identities=11% Similarity=0.319 Sum_probs=23.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEEcCCCCC
Q 024446 109 DRDDAVDAMLRYADAGLTTFDMADHYG 135 (267)
Q Consensus 109 ~~~~~~~~l~~A~d~Gin~fDTA~~YG 135 (267)
+.+...+....+++.|++.||.+..|.
T Consensus 75 ~~~~~~~~~~~~~~~g~~ViD~s~~~R 101 (121)
T PF01118_consen 75 PHGASKELAPKLLKAGIKVIDLSGDFR 101 (121)
T ss_dssp CHHHHHHHHHHHHHTTSEEEESSSTTT
T ss_pred chhHHHHHHHHHhhCCcEEEeCCHHHh
Confidence 346788899999999999999999884
No 98
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=26.94 E-value=2.5e+02 Score=25.16 Aligned_cols=67 Identities=18% Similarity=0.196 Sum_probs=44.4
Q ss_pred CCCceeEEEEecCC----------CCCCCHHHHH-HHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCEEEEeeeCCcc
Q 024446 190 DVPCLDMLQFHWWD----------YSNPGYLDAL-NHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQLRIG 258 (267)
Q Consensus 190 g~d~iDl~~lH~pd----------~~~~~~~~~~-~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~g~~~~~~Q~~ysl~ 258 (267)
.++.||.+++---| ...+++.+.+ +..+.+++.|| .+|+...+++...++++.|+.+.+......++
T Consensus 166 ~~~gvd~i~~G~~Dls~slg~~~~~~~pev~~ai~~v~~a~~~~Gk--~~G~~~~~~~~a~~~~~~G~~~v~~g~D~~~l 243 (267)
T PRK10128 166 DVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGK--AAGFLAVDPDMAQKCLAWGANFVAVGVDTMLY 243 (267)
T ss_pred CCCCCCEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCC--eEEEcCCCHHHHHHHHHcCCcEEEEChHHHHH
Confidence 45788888876422 1222233333 23445788898 57887788999999998898887777665544
No 99
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=26.92 E-value=66 Score=29.44 Aligned_cols=37 Identities=24% Similarity=0.205 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHcC---CCEEEcCCCC-C--CcHHHHHHHHh
Q 024446 110 RDDAVDAMLRYADAG---LTTFDMADHY-G--PAEDLYGIFIN 146 (267)
Q Consensus 110 ~~~~~~~l~~A~d~G---in~fDTA~~Y-G--~sE~~lG~al~ 146 (267)
...+..+++.|-+.| |+||||+-.| | ..|+-.++++.
T Consensus 136 yRKAlRlm~~AekF~lPiitfIDT~GAypG~~AEErGQ~eAIA 178 (317)
T COG0825 136 YRKALRLMKLAEKFGLPIITFIDTPGAYPGIGAEERGQSEAIA 178 (317)
T ss_pred HHHHHHHHHHHHHhCCCEEEEecCCCCCCCcchhhcccHHHHH
Confidence 346888888898888 5899999999 2 23443444444
No 100
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=26.32 E-value=5.8e+02 Score=24.81 Aligned_cols=160 Identities=11% Similarity=0.068 Sum_probs=0.0
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHH-cCCCEEEcCCCCCC-cHHHHHHHHhhhhccCCCc-ceeeEEeecccCCCCCCCCH
Q 024446 99 WQTSGGWGRIDRDDAVDAMLRYAD-AGLTTFDMADHYGP-AEDLYGIFINRVRRERPPE-FLDKVRGLTKWVPPPVKMTS 175 (267)
Q Consensus 99 ~~~g~~~~~~~~~~~~~~l~~A~d-~Gin~fDTA~~YG~-sE~~lG~al~~~~~~r~~~-~~~~v~i~tK~~~~~~~~~~ 175 (267)
+.+++.|...+.+...+-|+...+ .|+++|.-++.--. ..+.+-+.++...+. . +.....+.+..... ..++
T Consensus 213 ~~~~~~~R~rs~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~~~~~~~l~~~l~~~---~~l~i~w~~~~r~~~i--~~d~ 287 (497)
T TIGR02026 213 WKFWRRYRHRDPKKFVDEIEWLVRTHGVGFFILADEEPTINRKKFQEFCEEIIAR---NPISVTWGINTRVTDI--VRDA 287 (497)
T ss_pred CCCCceeecCCHHHHHHHHHHHHHHcCCCEEEEEecccccCHHHHHHHHHHHHhc---CCCCeEEEEecccccc--cCCH
Q ss_pred HHHHHHHHHHHHH--cCCCceeEEEEecCCCCCCCHHHHHHHHHHHHHcCCccE----EEecCCCHHHHHHHHHcCCCEE
Q 024446 176 SIVRESIDVSRRR--MDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKT----VALTNFDTERLRIILENGIPVV 249 (267)
Q Consensus 176 ~~i~~~l~~SL~r--Lg~d~iDl~~lH~pd~~~~~~~~~~~aL~~l~~~G~Ir~----iGvSn~~~~~l~~~~~~g~~~~ 249 (267)
+.++.--+.-+.+ +|++..|=-.+....-... .++..++++.+++.|.... +|+-+-+.+.+++.++.-....
T Consensus 288 ell~~l~~aG~~~v~iGiES~~~~~L~~~~K~~t-~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~~~~~l~ 366 (497)
T TIGR02026 288 DILHLYRRAGLVHISLGTEAAAQATLDHFRKGTT-TSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYRQLLDWD 366 (497)
T ss_pred HHHHHHHHhCCcEEEEccccCCHHHHHHhcCCCC-HHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHHHHHHcC
Q ss_pred EEeeeCCccCCCCcc
Q 024446 250 SNQVQLRIGKFIPFL 264 (267)
Q Consensus 250 ~~Q~~ysl~~r~~e~ 264 (267)
..++.++++.+-|.+
T Consensus 367 ~~~~~~~~~tP~PGT 381 (497)
T TIGR02026 367 PDQANWLMYTPWPFT 381 (497)
T ss_pred CCceEEEEecCCCCc
No 101
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=26.26 E-value=3.6e+02 Score=22.02 Aligned_cols=81 Identities=9% Similarity=0.063 Sum_probs=53.5
Q ss_pred CCCHHHHHHHHHHHHHHcCCCceeEEEEecCCCCCCCHHHHHHHHHHHHH--cCCccEEEecCCCHHHHHHHHHcCCCEE
Q 024446 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKE--EGKIKTVALTNFDTERLRIILENGIPVV 249 (267)
Q Consensus 172 ~~~~~~i~~~l~~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~aL~~l~~--~G~Ir~iGvSn~~~~~l~~~~~~g~~~~ 249 (267)
..+-+.+.+.+++.-+.+|++ ++.+|-.. --+.++.+.+..+ +|.|-.=|--+|..-.++.+++. +..-
T Consensus 25 ~~tl~~i~~~~~~~a~~~g~~-~~~~QSN~-------EGelId~i~~a~~~~dgiIINpga~THtSiAl~DAl~~-~~~P 95 (146)
T PRK13015 25 HETLADVEALCRAAAEALGLE-VEFRQSNH-------EGELIDWIHEARGDVAGIVINPGAYTHTSVAIRDALAA-LELP 95 (146)
T ss_pred CCCHHHHHHHHHHHHHHcCCE-EEEEeeCc-------HHHHHHHHHHhhhcCCEEEEcchHHhhhHHHHHHHHHc-CCCC
Confidence 357788999999999999985 77776432 2457777777754 34444445555666677777765 3455
Q ss_pred EEeeeCCccCCC
Q 024446 250 SNQVQLRIGKFI 261 (267)
Q Consensus 250 ~~Q~~ysl~~r~ 261 (267)
++++..|=.+.+
T Consensus 96 ~VEVHiSNi~aR 107 (146)
T PRK13015 96 VIEVHISNVHAR 107 (146)
T ss_pred EEEEEcCCcccc
Confidence 666665554444
No 102
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=26.07 E-value=5.4e+02 Score=23.93 Aligned_cols=63 Identities=8% Similarity=-0.022 Sum_probs=39.7
Q ss_pred CCCHHHHHHHHHHHHHHcCCCceeEEEEec-CCC-----------CCCCHHH---HH-HHHHHHHHcCCccEEEecCCCH
Q 024446 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHW-WDY-----------SNPGYLD---AL-NHLTDLKEEGKIKTVALTNFDT 235 (267)
Q Consensus 172 ~~~~~~i~~~l~~SL~rLg~d~iDl~~lH~-pd~-----------~~~~~~~---~~-~aL~~l~~~G~Ir~iGvSn~~~ 235 (267)
..+.+.+++.++..+ .|+.++|.+|.+.- |.. ..++.++ .+ .+.+.|.+.|. ..+++|||..
T Consensus 166 gqt~~~~~~~l~~~~-~l~~~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy-~~yeis~fa~ 243 (370)
T PRK06294 166 TQSLSDFIVDLHQAI-TLPITHISLYNLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLTSQGF-TRYELASYAK 243 (370)
T ss_pred CCCHHHHHHHHHHHH-ccCCCeEEEeeeEecCCChHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHcCC-CeeeeeeeeC
Confidence 457888888887766 48899999988763 211 0111122 22 24456777887 5578999874
Q ss_pred H
Q 024446 236 E 236 (267)
Q Consensus 236 ~ 236 (267)
.
T Consensus 244 ~ 244 (370)
T PRK06294 244 P 244 (370)
T ss_pred C
Confidence 3
No 103
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=25.78 E-value=4.7e+02 Score=24.79 Aligned_cols=65 Identities=17% Similarity=0.073 Sum_probs=42.9
Q ss_pred EEEecCCCC----------CCCHHHHHHHHHHHHHcCC----ccEEEec--CCCHHHHHHHHH--cCC------CEEEEe
Q 024446 197 LQFHWWDYS----------NPGYLDALNHLTDLKEEGK----IKTVALT--NFDTERLRIILE--NGI------PVVSNQ 252 (267)
Q Consensus 197 ~~lH~pd~~----------~~~~~~~~~aL~~l~~~G~----Ir~iGvS--n~~~~~l~~~~~--~g~------~~~~~Q 252 (267)
+.||.|+.. .-.+++.++++.+..+... +-|+=+- |-++++.+++.+ .+. +..+|-
T Consensus 232 iSLHA~~~e~R~~lmPin~~ypl~eLl~a~~~y~~~t~rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VNL 311 (371)
T PRK14461 232 ISLHAPDDALRSELMPVNRRYPIADLMAATRDYIAKTRRRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVNL 311 (371)
T ss_pred EEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhhCCEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEEE
Confidence 778998642 1137888888888764433 3333333 556777766665 356 679999
Q ss_pred eeCCccCCC
Q 024446 253 VQLRIGKFI 261 (267)
Q Consensus 253 ~~ysl~~r~ 261 (267)
++||+.+-.
T Consensus 312 Ip~Np~~~~ 320 (371)
T PRK14461 312 IPWNPVPGT 320 (371)
T ss_pred ecCCCCCCC
Confidence 999997544
No 104
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=25.74 E-value=3.9e+02 Score=24.98 Aligned_cols=65 Identities=9% Similarity=0.088 Sum_probs=39.6
Q ss_pred HHHHHHHHHHcCCCceeEEEEecCCC--CCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCC
Q 024446 179 RESIDVSRRRMDVPCLDMLQFHWWDY--SNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIP 247 (267)
Q Consensus 179 ~~~l~~SL~rLg~d~iDl~~lH~pd~--~~~~~~~~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~g~~ 247 (267)
+-.+-+.|.++|+++|+.-..-.|.. ...+.++.++.+ ++...++..++. .+...++.+++.|.+
T Consensus 70 Ki~ia~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~~~i---~~~~~~~~~~l~-~n~~die~A~~~g~~ 136 (347)
T PLN02746 70 KVELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAV---RNLEGARFPVLT-PNLKGFEAAIAAGAK 136 (347)
T ss_pred HHHHHHHHHHcCCCEEEECCCcCcccccccccHHHHHHHH---HhccCCceeEEc-CCHHHHHHHHHcCcC
Confidence 44556669999999999864444421 111233444444 443345555664 588899999887654
No 105
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=25.69 E-value=2.4e+02 Score=27.37 Aligned_cols=64 Identities=9% Similarity=0.050 Sum_probs=40.0
Q ss_pred HHHcCCCceeEEEEecCCCCC-CCHHHHHHHHHHHHHcCCccEEEec-CCCHHHHHHHHHcCCCEEEEeeeCC
Q 024446 186 RRRMDVPCLDMLQFHWWDYSN-PGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRIILENGIPVVSNQVQLR 256 (267)
Q Consensus 186 L~rLg~d~iDl~~lH~pd~~~-~~~~~~~~aL~~l~~~G~Ir~iGvS-n~~~~~l~~~~~~g~~~~~~Q~~ys 256 (267)
...+|.|++-+.+ +|.... -+. +..+.+.+... ++.+||- |-+++.+.++.+. .+++++|+.-+
T Consensus 273 a~~~GaD~lGfIf--~~~SpR~V~~-~~a~~i~~~l~---v~~VgVfv~~~~~~i~~i~~~-~~lD~vQLHG~ 338 (454)
T PRK09427 273 AYDAGAVYGGLIF--VEKSPRYVSL-EQAQEIIAAAP---LRYVGVFRNADIEDIVDIAKQ-LSLAAVQLHGD 338 (454)
T ss_pred HHhCCCCEEeeEe--CCCCCCCCCH-HHHHHHHHhCC---CCEEEEEeCCCHHHHHHHHHH-cCCCEEEeCCC
Confidence 3567999988863 332111 112 23333333222 8899998 7888888887765 47899998653
No 106
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=25.60 E-value=4.4e+02 Score=22.91 Aligned_cols=36 Identities=17% Similarity=0.284 Sum_probs=28.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEEcCCCCCCcHHHHHHH
Q 024446 109 DRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIF 144 (267)
Q Consensus 109 ~~~~~~~~l~~A~d~Gin~fDTA~~YG~sE~~lG~a 144 (267)
+.+++.++.+..++.|++.+.-+..-.++.+.+.+.
T Consensus 25 ~~~~a~~~~~al~~gGi~~iEiT~~tp~a~~~i~~l 60 (222)
T PRK07114 25 DVEVAKKVIKACYDGGARVFEFTNRGDFAHEVFAEL 60 (222)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCcHHHHHHHH
Confidence 678999999999999999999876544555555443
No 107
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=25.49 E-value=4.8e+02 Score=23.17 Aligned_cols=135 Identities=10% Similarity=0.154 Sum_probs=74.8
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEcCCCCCC---cHHHHHHHHhhhhccCCCcceeeEEeecccCCCCCCCCHHHHHHHHH
Q 024446 107 RIDRDDAVDAMLRYADAGLTTFDMADHYGP---AEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESID 183 (267)
Q Consensus 107 ~~~~~~~~~~l~~A~d~Gin~fDTA~~YG~---sE~~lG~al~~~~~~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~l~ 183 (267)
..+.++...+++.+.+.|+..|.-.. |. ... +-+.++..... . ...+.++|.-. +....-
T Consensus 39 ~ls~eei~~~i~~~~~~gi~~I~~tG--GEPll~~~-l~~iv~~l~~~---g-~~~v~i~TNG~----------ll~~~~ 101 (302)
T TIGR02668 39 ELSPEEIERIVRVASEFGVRKVKITG--GEPLLRKD-LIEIIRRIKDY---G-IKDVSMTTNGI----------LLEKLA 101 (302)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEC--cccccccC-HHHHHHHHHhC---C-CceEEEEcCch----------HHHHHH
Confidence 36778888999998999998876532 32 111 12333322111 0 11455555310 112233
Q ss_pred HHHHHcCCCceeEEEEecCCCC-------CCCHHHHHHHHHHHHHcCC----ccEEEecCCCHHHHHHHHHc--CCCEEE
Q 024446 184 VSRRRMDVPCLDMLQFHWWDYS-------NPGYLDALNHLTDLKEEGK----IKTVALTNFDTERLRIILEN--GIPVVS 250 (267)
Q Consensus 184 ~SL~rLg~d~iDl~~lH~pd~~-------~~~~~~~~~aL~~l~~~G~----Ir~iGvSn~~~~~l~~~~~~--g~~~~~ 250 (267)
..|.+.|++.|.+ -++.+++. ...++++++.++.+++.|. +..+.+.+.+.+++.++++. ..++.+
T Consensus 102 ~~l~~~g~~~v~i-Sld~~~~~~~~~i~~~~~~~~vl~~i~~~~~~G~~~v~i~~v~~~g~n~~ei~~~~~~~~~~g~~~ 180 (302)
T TIGR02668 102 KKLKEAGLDRVNV-SLDTLDPEKYKKITGRGALDRVIEGIESAVDAGLTPVKLNMVVLKGINDNEIPDMVEFAAEGGAIL 180 (302)
T ss_pred HHHHHCCCCEEEE-EecCCCHHHhhhccCCCcHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHHHHHhcCCEE
Confidence 4566677766543 34444321 1247889999999999985 23455555777777765542 233445
Q ss_pred EeeeCCccC
Q 024446 251 NQVQLRIGK 259 (267)
Q Consensus 251 ~Q~~ysl~~ 259 (267)
.=++|.+..
T Consensus 181 ~~ie~~p~~ 189 (302)
T TIGR02668 181 QLIELMPPG 189 (302)
T ss_pred EEEEEeECC
Confidence 445565554
No 108
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=25.43 E-value=3.3e+02 Score=22.07 Aligned_cols=81 Identities=11% Similarity=0.120 Sum_probs=53.2
Q ss_pred CCCHHHHHHHHHHHHHHcCCCceeEEEEecCCCCCCCHHHHHHHHHHHHH--cCCccEEEecCCCHHHHHHHHHcCCCEE
Q 024446 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKE--EGKIKTVALTNFDTERLRIILENGIPVV 249 (267)
Q Consensus 172 ~~~~~~i~~~l~~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~aL~~l~~--~G~Ir~iGvSn~~~~~l~~~~~~g~~~~ 249 (267)
..+-+.+.+.+++.-+.+|++ ++.+|-.. -.+.++.+.+..+ +|.|-.=|--+|+.-.++.+++. +..-
T Consensus 23 ~~tl~~i~~~l~~~a~~~g~~-v~~~QSN~-------Egelid~I~~a~~~~dgiIINpga~THtSvAi~DAl~~-~~~P 93 (140)
T cd00466 23 TTTLADIEALLRELAAELGVE-VEFFQSNH-------EGELIDWIHEARDGADGIIINPGAYTHTSIALRDALAA-VSIP 93 (140)
T ss_pred cCCHHHHHHHHHHHHHHcCCE-EEEEeeCc-------HHHHHHHHHHhhccCcEEEEcchHHHHHHHHHHHHHHc-CCCC
Confidence 457789999999999999985 88887442 2457777777754 34444444445666677777764 4455
Q ss_pred EEeeeCCccCCC
Q 024446 250 SNQVQLRIGKFI 261 (267)
Q Consensus 250 ~~Q~~ysl~~r~ 261 (267)
++++..|=.+.+
T Consensus 94 ~VEVHiSNi~aR 105 (140)
T cd00466 94 VIEVHISNIHAR 105 (140)
T ss_pred EEEEecCCcccc
Confidence 666766555433
No 109
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=25.23 E-value=5.3e+02 Score=23.53 Aligned_cols=84 Identities=10% Similarity=0.153 Sum_probs=52.4
Q ss_pred eEEeecccCCCCCCCCHHHHHHHHHHHHHHcCCCceeEEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHH--
Q 024446 159 KVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTE-- 236 (267)
Q Consensus 159 ~v~i~tK~~~~~~~~~~~~i~~~l~~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~aL~~l~~~G~Ir~iGvSn~~~~-- 236 (267)
++.+..|....+ =...+.+.+++..+++|. ++.+ ..|... +.....+.++.+..+| +..|-++..++.
T Consensus 25 ~i~~v~k~~~~p---f~~~~~~Gi~~aa~~~G~---~v~~-~~~~~~--d~~~q~~~i~~li~~~-vdgIiv~~~d~~al 94 (336)
T PRK15408 25 RIAFIPKLVGVG---FFTSGGNGAKEAGKELGV---DVTY-DGPTEP--SVSGQVQLINNFVNQG-YNAIIVSAVSPDGL 94 (336)
T ss_pred EEEEEECCCCCH---HHHHHHHHHHHHHHHhCC---EEEE-ECCCCC--CHHHHHHHHHHHHHcC-CCEEEEecCCHHHH
Confidence 444555543221 135678888999999984 4443 334322 2456678888888876 888888877654
Q ss_pred --HHHHHHHcCCCEEEEe
Q 024446 237 --RLRIILENGIPVVSNQ 252 (267)
Q Consensus 237 --~l~~~~~~g~~~~~~Q 252 (267)
.+.++.+.|+|+.++-
T Consensus 95 ~~~l~~a~~~gIpVV~~d 112 (336)
T PRK15408 95 CPALKRAMQRGVKVLTWD 112 (336)
T ss_pred HHHHHHHHHCCCeEEEeC
Confidence 4555666677655543
No 110
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=24.61 E-value=4.4e+02 Score=22.68 Aligned_cols=41 Identities=17% Similarity=0.178 Sum_probs=30.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEcCCCCCCcHHHHHHHHhhh
Q 024446 108 IDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRV 148 (267)
Q Consensus 108 ~~~~~~~~~l~~A~d~Gin~fDTA~~YG~sE~~lG~al~~~ 148 (267)
.+.+++.++.+..++.|++.|.-....-+..+.|.+.-+++
T Consensus 24 ~~~~~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~ 64 (212)
T PRK05718 24 NKLEDAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEV 64 (212)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHC
Confidence 36789999999999999999998855444555555443333
No 111
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=24.47 E-value=5.2e+02 Score=24.02 Aligned_cols=69 Identities=10% Similarity=0.029 Sum_probs=46.3
Q ss_pred CCCHHHHHHHHHHHHHHcCCCceeEEEEecCCCCCCCHHHHHHHHHHHHHcCC-ccEEEecCCCHHHHHHHHHcCCCE
Q 024446 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK-IKTVALTNFDTERLRIILENGIPV 248 (267)
Q Consensus 172 ~~~~~~i~~~l~~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~aL~~l~~~G~-Ir~iGvSn~~~~~l~~~~~~g~~~ 248 (267)
.++.+...+ +-+.|.++|+++|++- +|... +.-++.+.++.+.+. .+..+++..+.+.++.+.+.|++.
T Consensus 19 ~~s~~~k~~-ia~~L~~~Gv~~IEvG---~p~~~----~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g~~~ 88 (365)
T TIGR02660 19 AFTAAEKLA-IARALDEAGVDELEVG---IPAMG----EEERAVIRAIVALGLPARLMAWCRARDADIEAAARCGVDA 88 (365)
T ss_pred CCCHHHHHH-HHHHHHHcCCCEEEEe---CCCCC----HHHHHHHHHHHHcCCCcEEEEEcCCCHHHHHHHHcCCcCE
Confidence 355555444 4455999999999985 44322 234566677776643 777888888888998888776543
No 112
>PRK05588 histidinol-phosphatase; Provisional
Probab=24.37 E-value=4.7e+02 Score=22.69 Aligned_cols=102 Identities=11% Similarity=0.121 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHcCCCEEEcCCCCC-----------CcHHHHHHHHhhhhccCCCcceeeEEeecccCCCCCCCCHHHHHH
Q 024446 112 DAVDAMLRYADAGLTTFDMADHYG-----------PAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRE 180 (267)
Q Consensus 112 ~~~~~l~~A~d~Gin~fDTA~~YG-----------~sE~~lG~al~~~~~~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~ 180 (267)
...+.+++|++.|++.+ .+++.- +-+..+ +.+++++. .++.+.--.. +.++ -..
T Consensus 17 ~~ee~v~~A~~~Gl~~~-~TdH~~~~~~~~~~~~~~~~~y~-~~i~~~~~-------~~I~~GiE~~-----~~~~-~~~ 81 (255)
T PRK05588 17 KIEEAIKKAKENNLGII-ITEHMDLNLPDKNKFCFDVDSYF-NKYSKYRN-------NKLLLGIELG-----MEKD-LIE 81 (255)
T ss_pred CHHHHHHHHHHcCCCEE-EeCCCCCCCCCccccccCHHHHH-HHHHHHhc-------CCcceEEEec-----ccCC-CHH
Confidence 46789999999999998 776631 011221 11222211 1222222221 1222 345
Q ss_pred HHHHHHHHcCCCceeEEEEecCCCCC---------CCHHH----HHHHHHHHHH-cCCccEEE
Q 024446 181 SIDVSRRRMDVPCLDMLQFHWWDYSN---------PGYLD----ALNHLTDLKE-EGKIKTVA 229 (267)
Q Consensus 181 ~l~~SL~rLg~d~iDl~~lH~pd~~~---------~~~~~----~~~aL~~l~~-~G~Ir~iG 229 (267)
.+++.|++...||+ +.-+|+.+... .+.++ -++.+.++.+ .|++.-+|
T Consensus 82 ~~~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~v~~~~~~dvlg 143 (255)
T PRK05588 82 ENKELINKYEFDYV-IGSIHLVDKLDLYLDEFYKDKSKEEAYHIYFENMLKCLEKYDFIDSLG 143 (255)
T ss_pred HHHHHHhhCCCCeE-EEeEEeeCCCcchHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 56778888888887 88899853111 11233 3356667676 46555444
No 113
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=24.25 E-value=4.7e+02 Score=22.66 Aligned_cols=27 Identities=15% Similarity=0.226 Sum_probs=21.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEcCCCC
Q 024446 108 IDRDDAVDAMLRYADAGLTTFDMADHY 134 (267)
Q Consensus 108 ~~~~~~~~~l~~A~d~Gin~fDTA~~Y 134 (267)
.++++..++.+.+.+.|..|+=|+.-|
T Consensus 133 L~~e~i~~a~~~~~~agadfIKTsTG~ 159 (221)
T PRK00507 133 LTDEEKVKACEIAKEAGADFVKTSTGF 159 (221)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCC
Confidence 456777788888888888888887776
No 114
>cd00338 Ser_Recombinase Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase. Serine recombinases demonstrate functional versatility and include resolvases, invertases, integrases, and transposases. Resolvases and invertases (i.e. Tn3, gamma-delta, Tn5044 resolvases, Gin and Hin invertases) in this family contain a C-terminal DNA binding domain and comprise a major phylogenic group. Also included are phage- and bacterial-encoded recombinases such as phiC31 integrase, SpoIVCA excisionase, and Tn4451 TnpX transposase. These integrases and transposases have larger C-terminal domains compared to resolvases/invertases and are referred to as large serine recombinases. Also belonging to this family are protei
Probab=24.08 E-value=1.5e+02 Score=22.65 Aligned_cols=52 Identities=17% Similarity=0.224 Sum_probs=33.2
Q ss_pred HHHHHHHHHHcCCCceeEEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEEec
Q 024446 179 RESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT 231 (267)
Q Consensus 179 ~~~l~~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~aL~~l~~~G~Ir~iGvS 231 (267)
+..+++.|+.+....+|.+++..++.-.-+..+....++.|.+.| |+-+-++
T Consensus 51 R~~~~~ll~~~~~~~~d~ivv~~~~Rl~R~~~~~~~~~~~l~~~g-i~l~~~~ 102 (137)
T cd00338 51 RPGLQRLLADVKAGKIDVVLVEKLDRLSRNLVDLLELLELLEAHG-VRVVTAD 102 (137)
T ss_pred CHHHHHHHHHHHcCCCCEEEEEecchhhCCHHHHHHHHHHHHHCC-CEEEEec
Confidence 445555666665567888888888764444556777777777765 4444443
No 115
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=24.03 E-value=1.1e+02 Score=23.71 Aligned_cols=44 Identities=11% Similarity=0.138 Sum_probs=38.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEcCCCCCCcHHHHHHHHhhhhcc
Q 024446 108 IDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRE 151 (267)
Q Consensus 108 ~~~~~~~~~l~~A~d~Gin~fDTA~~YG~sE~~lG~al~~~~~~ 151 (267)
.+.+.-.+++...++.|.+.-+.|.-||-++..|..|.+.+...
T Consensus 13 ys~EfK~~aV~~~~~~g~sv~evA~e~gIs~~tl~~W~r~y~~~ 56 (121)
T PRK09413 13 RTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEG 56 (121)
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHhhc
Confidence 46677788999999999999999999999999999999887543
No 116
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=23.80 E-value=2.2e+02 Score=26.59 Aligned_cols=135 Identities=21% Similarity=0.198 Sum_probs=76.2
Q ss_pred CCHHHHHHHHHHHHHcC-CCEEEcCCCCC--CcHHHHHHHHhhhhccCCCcceeeEEeecccCCCCCCCCHHHHHHHHHH
Q 024446 108 IDRDDAVDAMLRYADAG-LTTFDMADHYG--PAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDV 184 (267)
Q Consensus 108 ~~~~~~~~~l~~A~d~G-in~fDTA~~YG--~sE~~lG~al~~~~~~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~l~~ 184 (267)
.+.++..+.-+.|-+.| .+|...|..+| ..-..+-++++....+ .-.++.++. ...+.+..+
T Consensus 84 ~~~eeIle~Ak~ak~~Ga~r~c~~aagr~~~~~~~~i~~~v~~Vk~~----~~le~c~sl------G~l~~eq~~----- 148 (335)
T COG0502 84 MEVEEILEAAKKAKAAGATRFCMGAAGRGPGRDMEEVVEAIKAVKEE----LGLEVCASL------GMLTEEQAE----- 148 (335)
T ss_pred CCHHHHHHHHHHHHHcCCceEEEEEeccCCCccHHHHHHHHHHHHHh----cCcHHhhcc------CCCCHHHHH-----
Confidence 56778888888888999 88888888886 2112233444332111 001111111 123444443
Q ss_pred HHHHcCCCceeEEEEecCCCC---------CCCHHHHHHHHHHHHHcCCccE----EEecCCCHHHHHHHHHc-CCCEEE
Q 024446 185 SRRRMDVPCLDMLQFHWWDYS---------NPGYLDALNHLTDLKEEGKIKT----VALTNFDTERLRIILEN-GIPVVS 250 (267)
Q Consensus 185 SL~rLg~d~iDl~~lH~pd~~---------~~~~~~~~~aL~~l~~~G~Ir~----iGvSn~~~~~l~~~~~~-g~~~~~ 250 (267)
-|+..|+|+ +-|+.+.. ...+++-++.++.+++.|.=-. +|+-+-..+++..+..- ..+. .
T Consensus 149 ~L~~aGvd~----ynhNLeTs~~~y~~I~tt~t~edR~~tl~~vk~~Gi~vcsGgI~GlGEs~eDri~~l~~L~~l~~-p 223 (335)
T COG0502 149 KLADAGVDR----YNHNLETSPEFYENIITTRTYEDRLNTLENVREAGIEVCSGGIVGLGETVEDRAELLLELANLPT-P 223 (335)
T ss_pred HHHHcChhh----eecccccCHHHHcccCCCCCHHHHHHHHHHHHHcCCccccceEecCCCCHHHHHHHHHHHHhCCC-C
Confidence 466677775 34654331 1238899999999999998554 34444445555554432 2232 5
Q ss_pred EeeeCCccCCCC
Q 024446 251 NQVQLRIGKFIP 262 (267)
Q Consensus 251 ~Q~~ysl~~r~~ 262 (267)
..+++|.+++.+
T Consensus 224 dsVPIn~l~P~~ 235 (335)
T COG0502 224 DSVPINFLNPIP 235 (335)
T ss_pred CeeeeeeecCCC
Confidence 566777776654
No 117
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=23.52 E-value=6e+02 Score=24.25 Aligned_cols=83 Identities=13% Similarity=0.083 Sum_probs=48.5
Q ss_pred CCCHHHHHHHHHHHHHHcCCCceeEEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEEecC---C-CHHHHHHHHHcCCC
Q 024446 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN---F-DTERLRIILENGIP 247 (267)
Q Consensus 172 ~~~~~~i~~~l~~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~aL~~l~~~G~Ir~iGvSn---~-~~~~l~~~~~~g~~ 247 (267)
..+++.+.+.+++.+.....+ .+-+.+-...+... .....+.++.+++.|.--+|+.+| + +++.++++.+.++
T Consensus 53 ~~t~~evl~ev~~d~~~~~~~-~ggVtisGGGepl~-~~~l~eLl~~lk~~gi~taI~~TnG~~l~~~e~~~~L~~~gl- 129 (404)
T TIGR03278 53 FIPPQVVLGEVQTSLGFRTGR-DTKVTISGGGDVSC-YPELEELTKGLSDLGLPIHLGYTSGKGFDDPEIAEFLIDNGV- 129 (404)
T ss_pred cCCHHHHHHHHHHHHHHhcCC-CCEEEEECCccccc-CHHHHHHHHHHHhCCCCEEEeCCCCcccCCHHHHHHHHHcCC-
Confidence 356777888888777655322 33444444332222 456777778888888777777444 3 5666777776543
Q ss_pred EEEEeeeCCcc
Q 024446 248 VVSNQVQLRIG 258 (267)
Q Consensus 248 ~~~~Q~~ysl~ 258 (267)
+.+++..+-.
T Consensus 130 -d~v~iSvka~ 139 (404)
T TIGR03278 130 -REVSFTVFAT 139 (404)
T ss_pred -CEEEEecccC
Confidence 4444444433
No 118
>PRK01313 rnpA ribonuclease P; Reviewed
Probab=23.19 E-value=3.8e+02 Score=21.21 Aligned_cols=62 Identities=15% Similarity=0.029 Sum_probs=43.5
Q ss_pred eeeEEeecccCCCCCCCCHHHHHHHHHHHHHHcCC----CceeEEEEecCCCCCCCHHHHHHHHHHHHH
Q 024446 157 LDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDV----PCLDMLQFHWWDYSNPGYLDALNHLTDLKE 221 (267)
Q Consensus 157 ~~~v~i~tK~~~~~~~~~~~~i~~~l~~SL~rLg~----d~iDl~~lH~pd~~~~~~~~~~~aL~~l~~ 221 (267)
+..+.++-|++. ...+..+++.+.++++.+.. ...|++++-.+.....++.+..+.|+.+.+
T Consensus 48 RvG~~VSKKvG~---AV~RNRiKR~lRE~fR~~~~~~~~~g~DiVivar~~~~~~~~~~l~~~L~~~l~ 113 (129)
T PRK01313 48 RVGFTVTKKNGN---AVERNRIRRRLKEAVRLHAGFDMAPGTDYVIVARRDALNAPFSQLTEELSRRIE 113 (129)
T ss_pred EEEEEEecccCc---chHHHHHHHHHHHHHHHhchhccCCCceEEEEECcccccCCHHHHHHHHHHHHH
Confidence 345556666532 45678888888888876643 568999999987766667777777776554
No 119
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=22.35 E-value=5.3e+02 Score=22.57 Aligned_cols=24 Identities=8% Similarity=0.151 Sum_probs=21.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEcC
Q 024446 108 IDRDDAVDAMLRYADAGLTTFDMA 131 (267)
Q Consensus 108 ~~~~~~~~~l~~A~d~Gin~fDTA 131 (267)
++.++..++++.-.+.||..++..
T Consensus 19 ~~~~~k~~i~~~L~~~Gv~~iEvg 42 (263)
T cd07943 19 FTLEQVRAIARALDAAGVPLIEVG 42 (263)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEee
Confidence 456888999999999999999986
No 120
>TIGR03586 PseI pseudaminic acid synthase.
Probab=22.35 E-value=6.3e+02 Score=23.38 Aligned_cols=128 Identities=16% Similarity=0.127 Sum_probs=70.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEcCCCCCCcHHHHHHHHhhhhcc---------------------CCCcceeeEEeeccc
Q 024446 108 IDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRE---------------------RPPEFLDKVRGLTKW 166 (267)
Q Consensus 108 ~~~~~~~~~l~~A~d~Gin~fDTA~~YG~sE~~lG~al~~~~~~---------------------r~~~~~~~v~i~tK~ 166 (267)
.+.++-.++.+.+-+.|+.|+=|...-.. + +.+.++..+ .+ .+.++|-
T Consensus 74 l~~e~~~~L~~~~~~~Gi~~~stpfd~~s----v-d~l~~~~v~~~KI~S~~~~n~~LL~~va~~gk-----PvilstG- 142 (327)
T TIGR03586 74 TPWEWHKELFERAKELGLTIFSSPFDETA----V-DFLESLDVPAYKIASFEITDLPLIRYVAKTGK-----PIIMSTG- 142 (327)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEccCCHHH----H-HHHHHcCCCEEEECCccccCHHHHHHHHhcCC-----cEEEECC-
Confidence 45677778889999999999976543111 1 222222111 11 1222332
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCCceeEEEEecCCCC-CCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHH--HH
Q 024446 167 VPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS-NPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRII--LE 243 (267)
Q Consensus 167 ~~~~~~~~~~~i~~~l~~SL~rLg~d~iDl~~lH~pd~~-~~~~~~~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~--~~ 243 (267)
-.+.+.+..+++...+ -|. -|+.++|....- .+...--+.++..|++.=. .-||+|.|+......+ +.
T Consensus 143 -----~~t~~Ei~~Av~~i~~-~g~--~~i~LlhC~s~YP~~~~~~nL~~i~~lk~~f~-~pVG~SDHt~G~~~~~aAva 213 (327)
T TIGR03586 143 -----IATLEEIQEAVEACRE-AGC--KDLVLLKCTSSYPAPLEDANLRTIPDLAERFN-VPVGLSDHTLGILAPVAAVA 213 (327)
T ss_pred -----CCCHHHHHHHHHHHHH-CCC--CcEEEEecCCCCCCCcccCCHHHHHHHHHHhC-CCEEeeCCCCchHHHHHHHH
Confidence 2367888888887653 343 378999985321 1111124455555555433 4699999987653332 22
Q ss_pred cCCCEEEEeeeCCc
Q 024446 244 NGIPVVSNQVQLRI 257 (267)
Q Consensus 244 ~g~~~~~~Q~~ysl 257 (267)
.|- .+++..+.+
T Consensus 214 ~GA--~iIEkH~tl 225 (327)
T TIGR03586 214 LGA--CVIEKHFTL 225 (327)
T ss_pred cCC--CEEEeCCCh
Confidence 343 466666555
No 121
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=22.29 E-value=4e+02 Score=25.00 Aligned_cols=65 Identities=15% Similarity=0.124 Sum_probs=41.4
Q ss_pred EEEecCCCC----------CCCHHHHHHHHHHHHHcCCccEEEe-------cCCCHHHHHHHHH--cCCCEEEEeeeCCc
Q 024446 197 LQFHWWDYS----------NPGYLDALNHLTDLKEEGKIKTVAL-------TNFDTERLRIILE--NGIPVVSNQVQLRI 257 (267)
Q Consensus 197 ~~lH~pd~~----------~~~~~~~~~aL~~l~~~G~Ir~iGv-------Sn~~~~~l~~~~~--~g~~~~~~Q~~ysl 257 (267)
+.||.|+.. ...+++.+++.+...+... +.|=+ -|-+.++.+++.+ .+++..+|-++||+
T Consensus 216 iSLHa~nd~lR~~L~Pink~~~~e~l~~a~r~Y~~~t~-~rVt~EY~Ll~~VND~~e~A~~L~~ll~~~~~~VNLIP~Np 294 (349)
T COG0820 216 ISLHAPNDELRDQLMPINKKYPIEELLEAIRYYPEKSG-RRVTFEYVLLDGVNDSLEHAKELAKLLKGIPCKVNLIPYNP 294 (349)
T ss_pred EecCCCCHHHHhhhhccccCCCHHHHHHHHHhhhhccC-ceEEEEeeecccccCCHHHHHHHHHHhcCCCceEEEeecCC
Confidence 678987642 1126677777777665544 43332 2445666666665 36777999999999
Q ss_pred cCCCC
Q 024446 258 GKFIP 262 (267)
Q Consensus 258 ~~r~~ 262 (267)
..-..
T Consensus 295 ~~~~~ 299 (349)
T COG0820 295 VPGSD 299 (349)
T ss_pred CCCCC
Confidence 86554
No 122
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=22.17 E-value=5.5e+02 Score=22.63 Aligned_cols=130 Identities=17% Similarity=0.179 Sum_probs=76.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEEcC---CCCC------CcHHHHHHHHhhhhccCCCcceeeEEeecccCCCCCCCCHHHHH
Q 024446 109 DRDDAVDAMLRYADAGLTTFDMA---DHYG------PAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVR 179 (267)
Q Consensus 109 ~~~~~~~~l~~A~d~Gin~fDTA---~~YG------~sE~~lG~al~~~~~~r~~~~~~~v~i~tK~~~~~~~~~~~~i~ 179 (267)
+.++..+..+.+.+.|+..|+.- +... +..+.+.+.++..... + ++-+.-|..+ ..+.+.+.
T Consensus 109 ~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~----~--~~pv~vKl~~---~~~~~~~~ 179 (289)
T cd02810 109 SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAA----V--DIPLLVKLSP---YFDLEDIV 179 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHc----c--CCCEEEEeCC---CCCHHHHH
Confidence 55788888999999999999853 2221 1234556666654322 1 2234445433 23455555
Q ss_pred HHHHHHHHHcCCCceeEEEEecCC-------------CCC-----CC---HHHHHHHHHHHHHcC--CccEEEecCC-CH
Q 024446 180 ESIDVSRRRMDVPCLDMLQFHWWD-------------YSN-----PG---YLDALNHLTDLKEEG--KIKTVALTNF-DT 235 (267)
Q Consensus 180 ~~l~~SL~rLg~d~iDl~~lH~pd-------------~~~-----~~---~~~~~~aL~~l~~~G--~Ir~iGvSn~-~~ 235 (267)
+.++ .++..|.|.|.+ |.-. ... .. ..-.++.+.++++.= .+.-||+... ++
T Consensus 180 ~~a~-~l~~~Gad~i~~---~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~~ 255 (289)
T cd02810 180 ELAK-AAERAGADGLTA---INTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDSG 255 (289)
T ss_pred HHHH-HHHHcCCCEEEE---EcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCCH
Confidence 5444 466778766655 3210 000 00 112577778887764 7889998885 57
Q ss_pred HHHHHHHHcCCCEEEEee
Q 024446 236 ERLRIILENGIPVVSNQV 253 (267)
Q Consensus 236 ~~l~~~~~~g~~~~~~Q~ 253 (267)
+.+.+++..| .+.+|+
T Consensus 256 ~da~~~l~~G--Ad~V~v 271 (289)
T cd02810 256 EDVLEMLMAG--ASAVQV 271 (289)
T ss_pred HHHHHHHHcC--ccHheE
Confidence 8888888765 466665
No 123
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=21.91 E-value=1.8e+02 Score=24.45 Aligned_cols=43 Identities=16% Similarity=0.080 Sum_probs=26.2
Q ss_pred eeEEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHH
Q 024446 194 LDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRII 241 (267)
Q Consensus 194 iDl~~lH~pd~~~~~~~~~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~ 241 (267)
+|.+|||..++ . +..+.+.+......++.+|++++...++.+.
T Consensus 74 ~d~Vqlhg~e~----~-~~~~~l~~~~~~~~i~~i~~~~~~~~~~~~~ 116 (203)
T cd00405 74 LDVVQLHGDES----P-EYCAQLRARLGLPVIKAIRVKDEEDLEKAAA 116 (203)
T ss_pred CCEEEECCCCC----H-HHHHHHHhhcCCcEEEEEecCChhhHHHhhh
Confidence 68889997641 1 2333333333346899999998876554333
No 124
>PRK04820 rnpA ribonuclease P; Reviewed
Probab=21.80 E-value=4.4e+02 Score=21.37 Aligned_cols=63 Identities=6% Similarity=-0.060 Sum_probs=41.9
Q ss_pred eeEEeecccCCCCCCCCHHHHHHHHHHHHHHcC--CCceeEEEEecCCCCCCCHHHHHHHHHHHHHc
Q 024446 158 DKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMD--VPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 222 (267)
Q Consensus 158 ~~v~i~tK~~~~~~~~~~~~i~~~l~~SL~rLg--~d~iDl~~lH~pd~~~~~~~~~~~aL~~l~~~ 222 (267)
..+.++-|++.. ...+..+++.+.+..+.+. +...|++++-.+.....++.++.+.|..|.+.
T Consensus 50 lG~sVSKKvg~~--AV~RNRiKR~lRE~fR~~~~~l~~~DiVviar~~~~~~~~~~l~~~l~~LL~k 114 (145)
T PRK04820 50 LGLAVSRKVDTR--AVGRNRIKRVLREAMRQLLPELAPGDYVVVARSAAAKASNPQLRDAFLRLLRR 114 (145)
T ss_pred EEEEEeccccCc--chhHHHHHHHHHHHHHHhhhccCCCCEEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 355556665322 3466777777777776542 33459999988876666688888888877665
No 125
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=21.73 E-value=4.5e+02 Score=21.43 Aligned_cols=69 Identities=12% Similarity=0.090 Sum_probs=50.0
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeEEEEecCCCCCCCHHHHHHHHHHHHHcCCc-cEEEecCCCHHHHHHHHH
Q 024446 173 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKI-KTVALTNFDTERLRIILE 243 (267)
Q Consensus 173 ~~~~~i~~~l~~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~aL~~l~~~G~I-r~iGvSn~~~~~l~~~~~ 243 (267)
..--.+++.+.+-|+..|-+.+|+=. +..+.. .++.+....+.+.+.+|.. +.|-+|....-.-..+-+
T Consensus 9 haG~~lK~~l~~~L~~~g~eV~D~G~-~~~~~~-~dYpd~a~~va~~V~~g~~~~GIliCGtGiG~siaANK 78 (148)
T PRK05571 9 HAGFELKEEIIEHLEELGHEVIDLGP-DSYDAS-VDYPDYAKKVAEAVVAGEADRGILICGTGIGMSIAANK 78 (148)
T ss_pred CchHHHHHHHHHHHHHCCCEEEEcCC-CCCCCC-CCHHHHHHHHHHHHHcCCCCEEEEEcCCcHHHHHHHhc
Confidence 34467899999999999999999742 222212 3477888888999999987 788888877665545444
No 126
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=21.59 E-value=4.4e+02 Score=21.32 Aligned_cols=65 Identities=8% Similarity=0.080 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeEEEEecCCCCCCCHHHHHHHHHHHHHcCCc-cEEEecCCCHHHHHHHHH
Q 024446 173 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKI-KTVALTNFDTERLRIILE 243 (267)
Q Consensus 173 ~~~~~i~~~l~~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~aL~~l~~~G~I-r~iGvSn~~~~~l~~~~~ 243 (267)
..--.+++.+.+-|+..|-+.+|+= +++ .++.+....+.+.+.+|.. +.|-+|....-.-..+-+
T Consensus 9 haG~~lK~~l~~~L~~~g~eV~D~G----~~~--~dypd~a~~va~~V~~~e~~~GIliCGtGiG~siaANK 74 (141)
T PRK12613 9 AHGNALKELIKSFLQEEGYDIIDVT----DIN--SDFIDNTLAVAKAVNEAEGRLGIMVDAYGAGPFMVATK 74 (141)
T ss_pred cchHHHHHHHHHHHHHCCCEEEEcC----CCC--CChHHHHHHHHHHHHcCCCceEEEEcCCCHhHhhhhhc
Confidence 3456789999999999999999974 221 2477788888899999987 788888777655444433
No 127
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=21.56 E-value=4.4e+02 Score=23.14 Aligned_cols=17 Identities=18% Similarity=0.401 Sum_probs=7.8
Q ss_pred EEecCCCHHHHHHHHHc
Q 024446 228 VALTNFDTERLRIILEN 244 (267)
Q Consensus 228 iGvSn~~~~~l~~~~~~ 244 (267)
|-|-+++++.++.+++.
T Consensus 79 iSIDT~~~~v~~aaL~~ 95 (258)
T cd00423 79 ISVDTFNAEVAEAALKA 95 (258)
T ss_pred EEEeCCcHHHHHHHHHh
Confidence 34444444444444443
No 128
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=21.41 E-value=3.6e+02 Score=20.19 Aligned_cols=57 Identities=12% Similarity=0.230 Sum_probs=35.7
Q ss_pred HHHHHHHHcCCCEEEcCCCCCCcHHHHHHHHhhhhccCCCcceeeEEeecccCCCCCCCCHHHHHHHHHHHHHHcCCC
Q 024446 115 DAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDVP 192 (267)
Q Consensus 115 ~~l~~A~d~Gin~fDTA~~YG~sE~~lG~al~~~~~~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~l~~SL~rLg~d 192 (267)
.+...-.+.|+|..|.+ ..++-.++. .-...-.. +...+...+++.++.-.++||++
T Consensus 19 ~is~vLAe~~vNIldis------Qtvm~~~ft-------------m~~lV~~~--~~~~d~~~lr~~l~~~~~~lgv~ 75 (90)
T COG3830 19 AVSRVLAEHGVNILDIS------QTVMDGFFT-------------MIMLVDIS--KEVVDFAALRDELAAEGKKLGVD 75 (90)
T ss_pred HHHHHHHHcCCcEEEHH------HHHHhhhce-------------eeeEEcCC--hHhccHHHHHHHHHHHHHhcCcE
Confidence 34444459999999974 555443331 11111111 12457788999999999999976
No 129
>TIGR00035 asp_race aspartate racemase.
Probab=21.20 E-value=5.3e+02 Score=22.07 Aligned_cols=65 Identities=9% Similarity=0.100 Sum_probs=45.5
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeEEEEecCCCC----------CCC-HHHHHHHHHHHHHcCCccEEEecCCCHHHH
Q 024446 173 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS----------NPG-YLDALNHLTDLKEEGKIKTVALTNFDTERL 238 (267)
Q Consensus 173 ~~~~~i~~~l~~SL~rLg~d~iDl~~lH~pd~~----------~~~-~~~~~~aL~~l~~~G~Ir~iGvSn~~~~~l 238 (267)
.+.+..++-++..-.+.+.++++.+.+++|+.. .++ .....+.++.|.+.| +..|-+..++...+
T Consensus 14 at~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~~~~~~~~~~~~l~~~~~~L~~~g-~d~iviaCNTah~~ 89 (229)
T TIGR00035 14 ATAELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYILGRGEDRPRPILIDIAVKLENAG-ADFIIMPCNTAHKF 89 (229)
T ss_pred HHHHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHHhcCCcchHHHHHHHHHHHHHHcC-CCEEEECCccHHHH
Confidence 355677777777778889999999999998531 111 223555666666654 79999998887664
No 130
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=21.14 E-value=97 Score=31.48 Aligned_cols=39 Identities=18% Similarity=0.249 Sum_probs=30.6
Q ss_pred HHHHHcCCCceeEEEEecCCCCCCCHHHHHHHHHHHHHcCCcc
Q 024446 184 VSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK 226 (267)
Q Consensus 184 ~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~aL~~l~~~G~Ir 226 (267)
-.|+.||++ |++-+++.|+.. .+....+|++|+..|-+.
T Consensus 413 L~Lkalgi~--d~l~F~f~d~P~--~~~l~~AL~~L~~lgald 451 (674)
T KOG0922|consen 413 LQLKALGIN--DPLRFPFIDPPP--PEALEEALEELYSLGALD 451 (674)
T ss_pred HHHHhcCCC--CcccCCCCCCCC--hHHHHHHHHHHHhcCccc
Confidence 347889998 999999988654 466888899998777655
No 131
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=20.77 E-value=4.2e+02 Score=21.66 Aligned_cols=83 Identities=13% Similarity=0.143 Sum_probs=52.7
Q ss_pred CCCHHHHHHHHHHHHHHcCCCceeEEEEecCCCCCCCHHHHHHHHHHHHH--cCCccEEEecCCCHHHHHHHHHcCCCEE
Q 024446 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKE--EGKIKTVALTNFDTERLRIILENGIPVV 249 (267)
Q Consensus 172 ~~~~~~i~~~l~~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~aL~~l~~--~G~Ir~iGvSn~~~~~l~~~~~~g~~~~ 249 (267)
..+-+.+.+.+++--+.+|++ ++++|-.. --+.++.+.+..+ +|.|-.=|--+|+.-.++.+++. +++-
T Consensus 25 ~~tl~~i~~~~~~~a~~~g~~-v~~~QSN~-------EGelId~I~~a~~~~dgiiINpga~THtSiAl~DAl~~-~~~P 95 (146)
T PRK05395 25 STTLADIEALLEEEAAELGVE-LEFFQSNH-------EGELIDRIHEARDGADGIIINPGAYTHTSVALRDALAA-VSIP 95 (146)
T ss_pred CCCHHHHHHHHHHHHHHcCCE-EEEEeeCc-------HHHHHHHHHhcccCCcEEEECchHHHHHHHHHHHHHHc-CCCC
Confidence 357789999999999999985 78876432 2457777777753 33333333334556667777764 3445
Q ss_pred EEeeeCCccCCCCc
Q 024446 250 SNQVQLRIGKFIPF 263 (267)
Q Consensus 250 ~~Q~~ysl~~r~~e 263 (267)
++++..|=.+.+.+
T Consensus 96 ~VEVHiSNi~aRE~ 109 (146)
T PRK05395 96 VIEVHLSNIHAREE 109 (146)
T ss_pred EEEEecCCcccccc
Confidence 67776655544433
No 132
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=20.76 E-value=32 Score=26.13 Aligned_cols=7 Identities=43% Similarity=1.023 Sum_probs=5.5
Q ss_pred ccccccc
Q 024446 4 MHCHFTG 10 (267)
Q Consensus 4 ~~~~~~~ 10 (267)
.||||||
T Consensus 23 vt~hYtg 29 (108)
T KOG0544|consen 23 VTVHYTG 29 (108)
T ss_pred EEEEEEe
Confidence 5788886
No 133
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=20.70 E-value=5.3e+02 Score=21.94 Aligned_cols=107 Identities=10% Similarity=0.045 Sum_probs=63.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEcCCCCCCcHHHHHHHHhhhhccCCCcceeeEEeecccCCCCCCCCHHHHHHHHHHHHH
Q 024446 108 IDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRR 187 (267)
Q Consensus 108 ~~~~~~~~~l~~A~d~Gin~fDTA~~YG~sE~~lG~al~~~~~~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~l~~SL~ 187 (267)
.+.+++.++++.+++.|++.|.-...-.+..+.+.+..++++.+ ..+-..|- .+.+.+..++
T Consensus 19 ~~~~~~~~~~~a~~~gGi~~iEvt~~~~~~~~~i~~l~~~~~~~------~~iGaGTV-------~~~~~~~~a~----- 80 (206)
T PRK09140 19 ITPDEALAHVGALIEAGFRAIEIPLNSPDPFDSIAALVKALGDR------ALIGAGTV-------LSPEQVDRLA----- 80 (206)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHcCCC------cEEeEEec-------CCHHHHHHHH-----
Confidence 36789999999999999999987643333444455444333211 12222232 3455555444
Q ss_pred HcCCCceeEEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCC
Q 024446 188 RMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGI 246 (267)
Q Consensus 188 rLg~d~iDl~~lH~pd~~~~~~~~~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~g~ 246 (267)
..|.|+ +|.|..+ .+.. +.+++.|..-..| .+++.++.++.+.|.
T Consensus 81 ~aGA~f-----ivsp~~~----~~v~---~~~~~~~~~~~~G--~~t~~E~~~A~~~Ga 125 (206)
T PRK09140 81 DAGGRL-----IVTPNTD----PEVI---RRAVALGMVVMPG--VATPTEAFAALRAGA 125 (206)
T ss_pred HcCCCE-----EECCCCC----HHHH---HHHHHCCCcEEcc--cCCHHHHHHHHHcCC
Confidence 356553 5766432 2233 4555677744444 677888888877664
No 134
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=20.57 E-value=5.2e+02 Score=21.73 Aligned_cols=132 Identities=15% Similarity=0.070 Sum_probs=72.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEEcC----------CCCCC----cHHHHHHHHhhhhccCCCcceeeEEeecccCCCCCCCC
Q 024446 109 DRDDAVDAMLRYADAGLTTFDMA----------DHYGP----AEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMT 174 (267)
Q Consensus 109 ~~~~~~~~l~~A~d~Gin~fDTA----------~~YG~----sE~~lG~al~~~~~~r~~~~~~~v~i~tK~~~~~~~~~ 174 (267)
+.++..++.+.+.+.|+..||-- +.||. ..+++-+.++..... . .+...+++.. .+ ...
T Consensus 65 ~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~-~-~~~v~vk~r~--~~---~~~ 137 (231)
T cd02801 65 DPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREA-V-PIPVTVKIRL--GW---DDE 137 (231)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHh-c-CCCEEEEEee--cc---CCc
Confidence 46788888889999999999852 34652 334455556554321 1 1112222211 11 111
Q ss_pred HHHHHHHHHHHHHHcCCCceeEEEEecCCCCC-CCHHHHHHHHHHHHHcCCccEEEecCC-CHHHHHHHHHcCCCEEEEe
Q 024446 175 SSIVRESIDVSRRRMDVPCLDMLQFHWWDYSN-PGYLDALNHLTDLKEEGKIKTVALTNF-DTERLRIILENGIPVVSNQ 252 (267)
Q Consensus 175 ~~~i~~~l~~SL~rLg~d~iDl~~lH~pd~~~-~~~~~~~~aL~~l~~~G~Ir~iGvSn~-~~~~l~~~~~~g~~~~~~Q 252 (267)
+...+-+ +.|+..|+|+| .+|...... ......|+.+.++++.-.+.-++.-.. +.+++.++++.+ ..+.++
T Consensus 138 -~~~~~~~-~~l~~~Gvd~i---~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~-gad~V~ 211 (231)
T cd02801 138 -EETLELA-KALEDAGASAL---TVHGRTREQRYSGPADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQT-GVDGVM 211 (231)
T ss_pred -hHHHHHH-HHHHHhCCCEE---EECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhc-CCCEEE
Confidence 2333322 33556676554 556542110 101125667778888777877777764 688888888752 245555
Q ss_pred e
Q 024446 253 V 253 (267)
Q Consensus 253 ~ 253 (267)
+
T Consensus 212 i 212 (231)
T cd02801 212 I 212 (231)
T ss_pred E
Confidence 5
No 135
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=20.51 E-value=7.1e+02 Score=23.29 Aligned_cols=136 Identities=13% Similarity=0.139 Sum_probs=74.9
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEcCCCCCCcHHH----HHHHHhhhhccCCCcceeeEEeecccCCCCCCCCHHHHHHHHH
Q 024446 108 IDRDDAVDAMLRYADAGLTTFDMADHYGPAEDL----YGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESID 183 (267)
Q Consensus 108 ~~~~~~~~~l~~A~d~Gin~fDTA~~YG~sE~~----lG~al~~~~~~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~l~ 183 (267)
.+.++..++++.+.+.|++.|--+- | |.+ +-+.++... +.. .+ ..+.++|.-. . +.+.+
T Consensus 90 ls~eei~~~i~~~~~~Gv~~I~~tG--G--EPllr~dl~eli~~l~-~~~-gi-~~i~itTNG~------l---L~~~~- 152 (373)
T PLN02951 90 LSQDEIVRLAGLFVAAGVDKIRLTG--G--EPTLRKDIEDICLQLS-SLK-GL-KTLAMTTNGI------T---LSRKL- 152 (373)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEC--C--CCcchhhHHHHHHHHH-hcC-CC-ceEEEeeCcc------h---HHHHH-
Confidence 6778899999988899998876432 3 222 223333221 110 11 1344555311 1 11222
Q ss_pred HHHHHcCCCceeEEEEecCCCC-------CCCHHHHHHHHHHHHHcCCc----cEEEecCCCHHHHHHHHHc--CCCEEE
Q 024446 184 VSRRRMDVPCLDMLQFHWWDYS-------NPGYLDALNHLTDLKEEGKI----KTVALTNFDTERLRIILEN--GIPVVS 250 (267)
Q Consensus 184 ~SL~rLg~d~iDl~~lH~pd~~-------~~~~~~~~~aL~~l~~~G~I----r~iGvSn~~~~~l~~~~~~--g~~~~~ 250 (267)
..|...|++.|-+ -++..+++ ...++.+++.++.+++.|+. ..+-+-.++.+++.++.+. ..++.+
T Consensus 153 ~~L~~aGld~VnI-SLDsl~~e~~~~itr~~~~~~vl~~I~~a~~~G~~~vkin~vv~~g~N~~Ei~~li~~a~~~gi~v 231 (373)
T PLN02951 153 PRLKEAGLTSLNI-SLDTLVPAKFEFLTRRKGHDRVLESIDTAIELGYNPVKVNCVVMRGFNDDEICDFVELTRDKPINV 231 (373)
T ss_pred HHHHhCCCCeEEE-eeccCCHHHHHHHhcCCCHHHHHHHHHHHHHcCCCcEEEEEEecCCCCHHHHHHHHHHHHhCCCeE
Confidence 3455567665442 23433321 12367899999999999952 2334445777777776652 245666
Q ss_pred EeeeCCccCCC
Q 024446 251 NQVQLRIGKFI 261 (267)
Q Consensus 251 ~Q~~ysl~~r~ 261 (267)
.-++|.++...
T Consensus 232 r~ie~mP~~~~ 242 (373)
T PLN02951 232 RFIEFMPFDGN 242 (373)
T ss_pred EEEEcccCCCC
Confidence 66777776543
No 136
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=20.48 E-value=6.7e+02 Score=24.15 Aligned_cols=84 Identities=8% Similarity=-0.002 Sum_probs=52.8
Q ss_pred CCCHHHHHHHHHHHHHHcCCCceeEEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCC---HHHHHHHHHcCCCE
Q 024446 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFD---TERLRIILENGIPV 248 (267)
Q Consensus 172 ~~~~~~i~~~l~~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~aL~~l~~~G~Ir~iGvSn~~---~~~l~~~~~~g~~~ 248 (267)
..+++.+.+.+++..+.++ .++.+-|-.|.......+.+++.+..++++..=..+.+|+.. ++.++++.+.+ +
T Consensus 59 ~Ltpee~~~~i~~v~~~~~--~~~~V~iaG~GEPLl~~e~~~~~l~~~~~~~~~i~i~lsTNG~~l~e~i~~L~~~g--v 134 (442)
T TIGR01290 59 LLTPEQALRKARQVAAEIP--QLSVVGIAGPGDPLANIGKTFQTLELVARQLPDVKLCLSTNGLMLPEHVDRLVDLG--V 134 (442)
T ss_pred cCCHHHHHHHHHHHHHhcC--CCCEEEEecCCCcccCccccHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHHHHCC--C
Confidence 4788889888888877662 345555556443332235578888888887211256777644 67778877765 3
Q ss_pred EEEeeeCCccC
Q 024446 249 VSNQVQLRIGK 259 (267)
Q Consensus 249 ~~~Q~~ysl~~ 259 (267)
+.+.+.++-++
T Consensus 135 d~V~islka~d 145 (442)
T TIGR01290 135 GHVTITINAID 145 (442)
T ss_pred CeEEEeccCCC
Confidence 55666555444
No 137
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=20.36 E-value=3.8e+02 Score=22.58 Aligned_cols=57 Identities=25% Similarity=0.284 Sum_probs=38.5
Q ss_pred HHHHcCCCc----eeEEEEecCCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHc
Q 024446 185 SRRRMDVPC----LDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN 244 (267)
Q Consensus 185 SL~rLg~d~----iDl~~lH~pd~~~~~~~~~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~ 244 (267)
.|++.|+.- +|-=++-|-+++. -.+..+.++++++.| ++-+=+||.+..++..+.+.
T Consensus 22 ~L~~~Gikgvi~DlDNTLv~wd~~~~--tpe~~~W~~e~k~~g-i~v~vvSNn~e~RV~~~~~~ 82 (175)
T COG2179 22 ILKAHGIKGVILDLDNTLVPWDNPDA--TPELRAWLAELKEAG-IKVVVVSNNKESRVARAAEK 82 (175)
T ss_pred HHHHcCCcEEEEeccCceecccCCCC--CHHHHHHHHHHHhcC-CEEEEEeCCCHHHHHhhhhh
Confidence 455666432 3445555544433 356777899999998 56777999999998877653
No 138
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=20.23 E-value=4.8e+02 Score=21.20 Aligned_cols=81 Identities=16% Similarity=0.150 Sum_probs=52.5
Q ss_pred CCCHHHHHHHHHHHHHHcCCCceeEEEEecCCCCCCCHHHHHHHHHHHHH--cCCccEEEecCCCHHHHHHHHHcCCCEE
Q 024446 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKE--EGKIKTVALTNFDTERLRIILENGIPVV 249 (267)
Q Consensus 172 ~~~~~~i~~~l~~SL~rLg~d~iDl~~lH~pd~~~~~~~~~~~aL~~l~~--~G~Ir~iGvSn~~~~~l~~~~~~g~~~~ 249 (267)
..+-+.+.+.+++--+.+|++ ++.+|-.. -.+.++.+.+..+ +|.|-.=|--+|+.-.++.+++. +..-
T Consensus 23 ~~tl~di~~~~~~~a~~~g~~-v~~~QSN~-------EGelId~i~~a~~~~dgiIINpga~THtSiAl~DAl~~-~~~P 93 (141)
T TIGR01088 23 SQTLEEIVEIIETFAAQLNVE-LEFFQSNS-------EGQLIDKIHEAEGQYDGIIINPGALTHTSVALRDALAA-VSLP 93 (141)
T ss_pred CCCHHHHHHHHHHHHHHcCCE-EEEEeeCc-------HHHHHHHHHhccccCCEEEEcChHHhhhHHHHHHHHHc-CCCC
Confidence 357789999999999999975 77776432 2457777777754 34444444445666677777764 3445
Q ss_pred EEeeeCCccCCC
Q 024446 250 SNQVQLRIGKFI 261 (267)
Q Consensus 250 ~~Q~~ysl~~r~ 261 (267)
++++..|=.+.+
T Consensus 94 ~vEVHiSNi~aR 105 (141)
T TIGR01088 94 VVEVHLSNVHAR 105 (141)
T ss_pred EEEEEcCCcccc
Confidence 667766555444
Done!