BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024447
(267 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P54729|NUB1_MOUSE NEDD8 ultimate buster 1 OS=Mus musculus GN=Nub1 PE=1 SV=2
Length = 614
Score = 104 bits (259), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 72/257 (28%), Positives = 128/257 (49%), Gaps = 22/257 (8%)
Query: 1 MMMGLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYF 60
+M+ + H ++ +KR Y AL L + F C ++L+ VDN +LQ+D+VWCYF
Sbjct: 233 LMLAMGYHEKGRAFLKRKEYGIALPCLLDADRYFCECK-ELLDTVDNYAVLQLDIVWCYF 291
Query: 61 MLRDISWLSEAGIRLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYH 120
L + L +A +L A++ + +G++ R+ ++ E L LR+ LL+G+ YH
Sbjct: 292 RLEQLECLDDAEKKLNLAQKCFKNCYGENHQRLVHIKGNCGKEKVLFLRLYLLQGIQNYH 351
Query: 121 SGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLV 180
SG ++AR L A+ F +L + + ++ +GF Q+A+ LR C +V A +
Sbjct: 352 SGNGEEAREYLNKARQLFKELYIDPSKVHNLLQLGFTAQEARLGLRACDGNVDHAATHI- 410
Query: 181 EEKAKRVKEREDNEQRRKEIMEQKRYGLTPLKKAVDIEKIKELVSIGFEKELVAEAL--- 237
RR+E+ + ++ K+ +E + L +G+ + +AL
Sbjct: 411 -------------SNRREELAQIRK--EEKEKRRRRLENVNTLRGMGYSTQAAKQALHQA 455
Query: 238 RRNENDSQKALDDLTNP 254
R N +D+ K L L+NP
Sbjct: 456 RGNLDDALKVL--LSNP 470
>sp|Q9Y5A7|NUB1_HUMAN NEDD8 ultimate buster 1 OS=Homo sapiens GN=NUB1 PE=1 SV=2
Length = 615
Score = 101 bits (252), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 94/175 (53%)
Query: 1 MMMGLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYF 60
+M+ + H ++ +KR Y AL L ++ F C ++L+ VDN +LQ+D+VWCYF
Sbjct: 233 LMLAMGYHEKGRAFLKRKEYGIALPCLLDADKYFCECCRELLDTVDNYAVLQLDIVWCYF 292
Query: 61 MLRDISWLSEAGIRLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYH 120
L + L +A +L A++ + +G++ R+ ++ E L LR+ LL+G+ YH
Sbjct: 293 RLEQLECLDDAEKKLNLAQKCFKNCYGENHQRLVHIKGNCGKEKVLFLRLYLLQGIRNYH 352
Query: 121 SGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRALRICSQDVGSA 175
SG +A L A+ F +L + + ++ +GF Q+A+ LR C +V A
Sbjct: 353 SGNDVEAYEYLNKARQLFKELYIDPSKVDNLLQLGFTAQEARLGLRACDGNVDHA 407
>sp|E1BMF7|UBP13_BOVIN Ubiquitin carboxyl-terminal hydrolase 13 OS=Bos taurus GN=USP13
PE=3 SV=2
Length = 863
Score = 36.2 bits (82), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 5/57 (8%)
Query: 142 QVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFL-----VEEKAKRVKEREDN 193
Q P+E+++++ SMGF A +ALR + ++ A+D++ EE + V E E+N
Sbjct: 727 QPPEETVAIITSMGFHRNQAIQALRATNSNLERALDWIFSHPEFEEDSDFVIEMENN 783
>sp|Q92995|UBP13_HUMAN Ubiquitin carboxyl-terminal hydrolase 13 OS=Homo sapiens GN=USP13
PE=1 SV=2
Length = 863
Score = 35.0 bits (79), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 5/57 (8%)
Query: 142 QVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFL-----VEEKAKRVKEREDN 193
Q P+E ++++ SMGF+ A +ALR + ++ A+D++ EE + V E E+N
Sbjct: 727 QPPEEIVAIITSMGFQRNQAIQALRATNNNLERALDWIFSHPEFEEDSDFVIEMENN 783
>sp|F6V6I0|UBP13_XENTR Ubiquitin carboxyl-terminal hydrolase 13 OS=Xenopus tropicalis
GN=usp13 PE=3 SV=2
Length = 846
Score = 35.0 bits (79), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 142 QVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLV-----EEKAKRVKEREDNEQR 196
Q P+E ++L+ SMGF A +ALR + ++ A+D++ EE A V D E
Sbjct: 708 QPPEEIVALICSMGFPRNHALQALRATNNNLERALDWMFSHPESEEGADNVSGCVDTENN 767
Query: 197 RKEIM 201
I+
Sbjct: 768 PNGII 772
>sp|A4QCG9|SERC_CORGB Phosphoserine aminotransferase OS=Corynebacterium glutamicum
(strain R) GN=serC PE=3 SV=1
Length = 376
Score = 34.3 bits (77), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 161 AKRALRICSQDVGSAIDFLVEEKAKRVKEREDNEQRRKEIMEQKRYGLTPLKKAVDIEKI 220
AKR+L + + D +ID V K R D E RK Q R G+ P + D+EK+
Sbjct: 302 AKRSLVVGTIDFDDSIDAAVIAKILRANGILDTEPYRKLGRNQLRIGMFPAIDSTDVEKL 361
Query: 221 KELVSI----GFEKE 231
+ GF K+
Sbjct: 362 TGAIDFILDGGFAKK 376
>sp|Q6P158|DHX57_HUMAN Putative ATP-dependent RNA helicase DHX57 OS=Homo sapiens GN=DHX57
PE=1 SV=2
Length = 1386
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 16/122 (13%)
Query: 155 GFKEQDAKRALRICSQDVGSAIDFLV-----EEKAKRVKERED-NEQRRKEIMEQKR--- 205
GF + + LR+C DVG++++ L+ E +R+K E N+ E MEQ++
Sbjct: 193 GFNTERCQAVLRMCDGDVGASLEHLLTQCFSETFGERMKISEAVNQISLDECMEQRQEEA 252
Query: 206 YGLTPLKKAVDIEKIKELV-SIGFEKELVAEALRRNENDSQKALDDLTNPESNSAIQVTN 264
+ L + IE+I+ V +IG E E + R++ K + N + NS +++
Sbjct: 253 FALKSICGEKFIERIQNRVWTIGLELEYLTSRFRKS-----KPKESTKNVQENS-LEICK 306
Query: 265 FF 266
F+
Sbjct: 307 FY 308
>sp|Q9LXE5|DRM1_ARATH DNA (cytosine-5)-methyltransferase DRM1 OS=Arabidopsis thaliana
GN=DRM1 PE=4 SV=2
Length = 624
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 8/91 (8%)
Query: 145 DESLSLVMSMGFKEQDAKRALRICSQDVG--SAIDFLVEEKAKRVKEREDNEQRRKEIME 202
D L ++ MG+ +DA A+ C +D +DF+ + R + E +KE+M
Sbjct: 192 DRILQALIKMGYLREDAAIAIERCGEDASMEEVVDFICAAQMARQFDEIYAEPDKKELMN 251
Query: 203 QKR----YGLTPLKKAVD--IEKIKELVSIG 227
+ Y TP K D I KE++ G
Sbjct: 252 NNKKRRTYTETPRKPNTDQLISLPKEMIGFG 282
>sp|Q5BKP2|UBP13_MOUSE Ubiquitin carboxyl-terminal hydrolase 13 OS=Mus musculus GN=Usp13
PE=2 SV=1
Length = 858
Score = 33.5 bits (75), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 5/57 (8%)
Query: 142 QVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFL-----VEEKAKRVKEREDN 193
Q P+E ++++ SMGF+ A +AL+ + ++ A+D++ EE + V E E+N
Sbjct: 722 QPPEEIVAIITSMGFQRNQAVQALQATNHNLERALDWIFSHPEFEEDSDFVIEMENN 778
>sp|Q8R1K1|UBAC2_MOUSE Ubiquitin-associated domain-containing protein 2 OS=Mus musculus
GN=Ubac2 PE=2 SV=1
Length = 345
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 141 LQVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEE 182
L+V +E ++ +M MGF DA ALR + D+ A +FL++
Sbjct: 304 LEVSEEQVARLMEMGFSRGDALEALRASNNDLNVATNFLLQH 345
>sp|Q4R910|UBAC2_MACFA Ubiquitin-associated domain-containing protein 2 OS=Macaca
fascicularis GN=UBAC2 PE=2 SV=1
Length = 345
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 141 LQVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEE 182
L+V +E ++ +M MGF DA ALR + D+ A +FL++
Sbjct: 304 LEVSEEQVARLMEMGFSRGDALEALRASNNDLNVATNFLLQH 345
>sp|Q8NBM4|UBAC2_HUMAN Ubiquitin-associated domain-containing protein 2 OS=Homo sapiens
GN=UBAC2 PE=2 SV=1
Length = 344
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 141 LQVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEE 182
L+V +E ++ +M MGF DA ALR + D+ A +FL++
Sbjct: 303 LEVSEEQVARLMEMGFSRGDALEALRASNNDLNVATNFLLQH 344
>sp|F1QFS9|UBP13_DANRE Ubiquitin carboxyl-terminal hydrolase 13 OS=Danio rerio GN=usp13
PE=2 SV=1
Length = 860
Score = 33.1 bits (74), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Query: 142 QVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFL-----VEEKAKRVKEREDNE 194
Q P+ES+S++ SMGF +AL+ + ++ A+D++ E++++ + + D E
Sbjct: 710 QPPEESISILTSMGFPRHHTIQALKASNNNLERALDWIFTHPDCEDESEAMSDTADTE 767
>sp|Q6P5D3|DHX57_MOUSE Putative ATP-dependent RNA helicase DHX57 OS=Mus musculus GN=Dhx57
PE=2 SV=2
Length = 1388
Score = 32.7 bits (73), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 22/118 (18%)
Query: 155 GFKEQDAKRALRICSQDVGSAIDFL--------------VEEKAKRVKEREDNEQRRKEI 200
GF + + ALRIC D+G+A++ L + E A V E EQR++E
Sbjct: 193 GFHTEHCQLALRICDGDLGAALEHLLRQCFSETFGERMALSEAAVYVSLNECVEQRQEET 252
Query: 201 MEQKRYGLTPLKKAVDIEKIKELV-SIGFEKE-LVAEALRRNENDSQKALDDLTNPES 256
+ L + IE+I+ V +IG E + L + + + +S K + D T+PE+
Sbjct: 253 L-----ALKSICGEKFIERIQNRVWTIGLELDYLTNKFCKSKQKESSKNVRD-TSPET 304
>sp|Q5AY89|DDI1_EMENI DNA damage-inducible protein 1 OS=Emericella nidulans (strain FGSC
A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=ddi1
PE=3 SV=2
Length = 418
Score = 32.7 bits (73), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 144 PDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLV 180
P+ S++ + +GF ++A RAL + D+ AI FL+
Sbjct: 382 PEASIAKITELGFTREEATRALEAANGDLDGAIGFLI 418
>sp|Q2USD7|DDI1_ASPOR DNA damage-inducible protein 1 OS=Aspergillus oryzae (strain ATCC
42149 / RIB 40) GN=ddi1 PE=3 SV=2
Length = 402
Score = 32.3 bits (72), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 117 AAYHSGQFDKARNALTSAQAKFFQLQV---PDESLSLVMSMGFKEQDAKRALRICSQDVG 173
A H Q ++ T+ ++ Q P +S++ + +GF ++A RAL + D+
Sbjct: 336 AVTHQAQGPGGASSSTAPPSRPAPAQSSRWPQDSIAKITELGFTREEAMRALDAANGDLD 395
Query: 174 SAIDFLV 180
AI FL+
Sbjct: 396 GAIGFLI 402
>sp|A2AEY4|MA7D3_MOUSE MAP7 domain-containing protein 3 OS=Mus musculus GN=Map7d3 PE=2
SV=1
Length = 876
Score = 32.3 bits (72), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 33/51 (64%), Gaps = 4/51 (7%)
Query: 180 VEEKAKRVKEREDNEQRRKEIMEQKRYGLTPLKKAVDIEKIKELVSIGFEK 230
+EEK +++KE+++ +QRR+ E+KR K+A D EK K +VS E+
Sbjct: 101 LEEKHRKLKEQKEKDQRRQASAEEKRK----QKQAEDTEKFKAVVSRTLER 147
>sp|Q6IE24|UBP54_RAT Inactive ubiquitin carboxyl-terminal hydrolase 54 OS=Rattus
norvegicus GN=Usp54 PE=2 SV=2
Length = 1588
Score = 32.3 bits (72), Expect = 4.1, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 174 SAIDFLVEEKAKRVKEREDNEQRRKEIMEQKRYGLTPLKKAVDIEKIK-ELVSIGFEKEL 232
S +D L EE A+R +E+E ++R KE+ K + P + +D+++++ + S GFE+ L
Sbjct: 681 SELDELQEEVARRAQEQELRKKREKELEAAKGFNPHP-SRYMDLDELQNQGRSDGFERSL 739
>sp|Q5ZJQ8|UBAC2_CHICK Ubiquitin-associated domain-containing protein 2 OS=Gallus gallus
GN=UBAC2 PE=2 SV=1
Length = 344
Score = 32.0 bits (71), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 142 QVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEE 182
+V +E ++ +M MGF DA ALR + D+ A +FL++
Sbjct: 304 EVSEEQVARLMEMGFSRGDALEALRASNNDLNVATNFLLQH 344
>sp|Q0CJ13|DDI1_ASPTN DNA damage-inducible protein 1 OS=Aspergillus terreus (strain NIH
2624 / FGSC A1156) GN=ddi1 PE=3 SV=1
Length = 413
Score = 31.6 bits (70), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 144 PDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLV 180
P +S++ + +GF ++A RAL + D+ AI FL+
Sbjct: 377 PQDSIAKITELGFTREEAMRALDAANGDLDGAIGFLI 413
>sp|A1DCU5|DDI1_NEOFI DNA damage-inducible protein 1 OS=Neosartorya fischeri (strain ATCC
1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=ddi1 PE=3
SV=1
Length = 405
Score = 31.6 bits (70), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 144 PDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLV 180
P +S++ + +GF ++A RAL + D+ AI FL+
Sbjct: 369 PQDSIAKITELGFTREEAVRALDAANGDLDGAIGFLI 405
>sp|Q4WGS4|DDI1_ASPFU DNA damage-inducible protein 1 OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=ddi1 PE=3
SV=1
Length = 405
Score = 31.6 bits (70), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 144 PDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLV 180
P +S++ + +GF ++A RAL + D+ AI FL+
Sbjct: 369 PQDSIAKITELGFTREEAVRALDAANGDLDGAIGFLI 405
>sp|Q70EL1|UBP54_HUMAN Inactive ubiquitin carboxyl-terminal hydrolase 54 OS=Homo sapiens
GN=USP54 PE=1 SV=4
Length = 1684
Score = 31.6 bits (70), Expect = 6.4, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 174 SAIDFLVEEKAKRVKEREDNEQRRKEIMEQKRYGLTPLKKAVDIEKIK-ELVSIGFEKEL 232
S +D L EE A+R +E+E +R KE+ K + P + +D+++++ + S GFE+ L
Sbjct: 739 SELDELQEEVARRAQEQELRRKREKELEAAKGFNPHP-SRFMDLDELQNQGRSDGFERSL 797
>sp|Q5L6U2|KCY_CHLAB Cytidylate kinase OS=Chlamydophila abortus (strain S26/3) GN=cmk
PE=3 SV=1
Length = 216
Score = 30.8 bits (68), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 217 IEKIKELVSIGFEKELV-AEALRRNENDSQKALDDLTNPE 255
+ ++K+L KE V A+ ++R+E DSQ++LD L PE
Sbjct: 149 LRRLKDLPHNSLSKEAVYAQLIKRDETDSQRSLDPLVIPE 188
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,283,092
Number of Sequences: 539616
Number of extensions: 3512770
Number of successful extensions: 16615
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 126
Number of HSP's that attempted gapping in prelim test: 16339
Number of HSP's gapped (non-prelim): 363
length of query: 267
length of database: 191,569,459
effective HSP length: 115
effective length of query: 152
effective length of database: 129,513,619
effective search space: 19686070088
effective search space used: 19686070088
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)