Query 024447
Match_columns 267
No_of_seqs 219 out of 544
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 08:23:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024447.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024447hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lbc_A Ubiquitin carboxyl-term 99.9 4.1E-23 1.4E-27 168.5 10.3 104 143-255 2-118 (126)
2 4ae4_A Ubiquitin-associated pr 99.9 2.6E-23 8.9E-28 168.7 9.0 103 144-252 8-112 (118)
3 1oqy_A HHR23A, UV excision rep 99.6 7E-16 2.4E-20 146.2 3.3 115 143-257 167-367 (368)
4 1wiv_A UBP14, ubiquitin-specif 99.5 4.7E-16 1.6E-20 116.0 -0.2 69 173-257 2-71 (73)
5 3ihp_A Ubiquitin carboxyl-term 99.5 9.6E-15 3.3E-19 151.0 8.6 111 140-258 648-763 (854)
6 1wiv_A UBP14, ubiquitin-specif 99.5 7.3E-15 2.5E-19 109.6 2.2 66 115-186 6-71 (73)
7 1wgn_A UBAP1, ubiquitin associ 99.4 5.4E-14 1.9E-18 100.9 4.1 42 144-185 19-60 (63)
8 2cpw_A CBL-interacting protein 99.4 9.5E-14 3.2E-18 101.0 3.3 49 138-187 14-63 (64)
9 1whc_A RSGI RUH-027, UBA/UBX 3 99.4 2.7E-13 9.2E-18 98.6 4.7 48 141-188 6-54 (64)
10 2crn_A Ubash3A protein; compac 99.4 2.9E-13 9.9E-18 98.5 4.5 49 141-189 6-55 (64)
11 2dag_A Ubiquitin carboxyl-term 99.4 6.6E-13 2.3E-17 99.2 5.4 49 141-189 6-55 (74)
12 2dak_A Ubiquitin carboxyl-term 99.4 4.8E-13 1.6E-17 96.8 4.4 47 142-188 7-53 (63)
13 2g3q_A Protein YBL047C; endocy 99.3 5.8E-13 2E-17 89.2 4.1 40 143-182 3-42 (43)
14 2dai_A Ubadc1, ubiquitin assoc 99.3 1E-12 3.4E-17 100.3 5.3 49 141-189 26-74 (83)
15 2lbc_A Ubiquitin carboxyl-term 99.3 1.3E-12 4.5E-17 106.2 4.4 81 98-186 28-121 (126)
16 2ekk_A UBA domain from E3 ubiq 99.3 1.9E-12 6.3E-17 88.4 4.2 42 141-183 6-47 (47)
17 1wji_A Tudor domain containing 99.3 3.9E-12 1.3E-16 92.2 5.3 45 142-186 7-51 (63)
18 1wgn_A UBAP1, ubiquitin associ 99.3 1.8E-12 6E-17 93.1 3.2 40 217-256 20-60 (63)
19 1vek_A UBP14, ubiquitin-specif 99.3 4.9E-12 1.7E-16 96.6 5.3 50 140-189 25-75 (84)
20 4ae4_A Ubiquitin-associated pr 99.2 6.1E-12 2.1E-16 101.8 6.0 89 85-182 17-114 (118)
21 1ify_A HHR23A, UV excision rep 99.2 4.7E-12 1.6E-16 87.3 3.5 39 144-182 8-46 (49)
22 1veg_A NEDD8 ultimate buster-1 99.2 9.1E-12 3.1E-16 94.9 5.3 47 140-186 25-71 (83)
23 1dv0_A DNA repair protein HHR2 99.2 1.6E-12 5.5E-17 89.0 1.0 43 144-186 4-46 (47)
24 2dkl_A Trinucleotide repeat co 99.1 1.5E-11 5E-16 94.2 2.9 45 143-187 20-64 (85)
25 1vg5_A RSGI RUH-014, rhomboid 99.1 5.1E-11 1.8E-15 88.8 5.2 43 142-184 27-69 (73)
26 2knz_A Ubiquilin-4; cytoplasm, 99.1 5.6E-11 1.9E-15 83.2 5.1 38 146-183 13-51 (53)
27 2jy5_A Ubiquilin-1; UBA, alter 99.1 4.4E-11 1.5E-15 83.4 4.5 40 144-183 12-52 (52)
28 1z96_A DNA-damage, UBA-domain 99.1 5.5E-11 1.9E-15 77.8 4.6 36 145-180 5-40 (40)
29 2ekk_A UBA domain from E3 ubiq 99.1 1.1E-10 3.7E-15 79.6 5.4 41 213-254 6-47 (47)
30 2g3q_A Protein YBL047C; endocy 99.1 7E-11 2.4E-15 78.9 4.2 38 215-252 3-40 (43)
31 1veg_A NEDD8 ultimate buster-1 99.1 8E-11 2.7E-15 89.7 4.8 49 213-261 26-76 (83)
32 2cpw_A CBL-interacting protein 99.1 7.9E-11 2.7E-15 85.5 4.0 45 214-258 17-63 (64)
33 1wji_A Tudor domain containing 99.0 2.1E-10 7.3E-15 83.1 5.2 43 214-256 7-50 (63)
34 2dak_A Ubiquitin carboxyl-term 99.0 8.8E-11 3E-15 84.8 3.0 42 214-255 7-49 (63)
35 2dah_A Ubiquilin-3; UBA domain 99.0 2.3E-10 7.7E-15 80.5 4.3 42 144-185 9-51 (54)
36 2bwb_A Ubiquitin-like protein 99.0 3.4E-10 1.2E-14 77.1 5.0 38 145-182 8-46 (46)
37 1vg5_A RSGI RUH-014, rhomboid 99.0 6.2E-10 2.1E-14 82.9 6.6 43 213-255 26-69 (73)
38 2jy5_A Ubiquilin-1; UBA, alter 99.0 8.6E-10 2.9E-14 76.9 6.6 39 216-254 12-52 (52)
39 1whc_A RSGI RUH-027, UBA/UBX 3 99.0 2.3E-10 8E-15 83.0 3.8 44 214-257 7-52 (64)
40 1ify_A HHR23A, UV excision rep 99.0 2.5E-10 8.7E-15 78.6 3.5 37 216-252 8-44 (49)
41 2dag_A Ubiquitin carboxyl-term 99.0 5.8E-10 2E-14 83.2 5.0 45 213-257 6-52 (74)
42 1wr1_B Ubiquitin-like protein 98.9 6.7E-10 2.3E-14 79.2 4.8 39 145-183 18-57 (58)
43 2dna_A Unnamed protein product 98.9 5.6E-10 1.9E-14 81.8 3.9 41 145-185 20-61 (67)
44 2crn_A Ubash3A protein; compac 98.9 4.9E-10 1.7E-14 81.4 3.5 44 213-256 6-51 (64)
45 1z96_A DNA-damage, UBA-domain 98.9 1.5E-09 5E-14 70.9 5.1 35 217-251 5-39 (40)
46 2knz_A Ubiquilin-4; cytoplasm, 98.9 1.4E-09 4.7E-14 76.1 5.2 37 218-254 13-51 (53)
47 2dkl_A Trinucleotide repeat co 98.9 6.5E-10 2.2E-14 85.1 3.8 47 212-258 17-64 (85)
48 2dai_A Ubadc1, ubiquitin assoc 98.9 9.8E-10 3.3E-14 83.7 4.3 43 214-256 27-70 (83)
49 1vej_A Riken cDNA 4931431F19; 98.9 1.2E-09 4.2E-14 81.5 4.4 42 144-185 29-71 (74)
50 1dv0_A DNA repair protein HHR2 98.9 1.1E-09 3.9E-14 74.8 3.1 42 216-257 4-46 (47)
51 2ooa_A E3 ubiquitin-protein li 98.8 2.6E-09 8.9E-14 74.1 4.5 35 217-251 12-46 (52)
52 1vek_A UBP14, ubiquitin-specif 98.8 3.3E-09 1.1E-13 80.9 5.3 46 212-257 25-72 (84)
53 2dah_A Ubiquilin-3; UBA domain 98.8 3.7E-09 1.3E-13 74.3 4.9 42 216-257 9-52 (54)
54 2bwb_A Ubiquitin-like protein 98.8 8.3E-09 2.8E-13 70.2 5.2 36 217-252 8-44 (46)
55 2ooa_A E3 ubiquitin-protein li 98.8 9.5E-09 3.2E-13 71.3 5.5 37 145-181 12-48 (52)
56 1wr1_B Ubiquitin-like protein 98.8 6.2E-09 2.1E-13 74.2 4.5 38 217-254 18-57 (58)
57 2d9s_A CBL E3 ubiquitin protei 98.7 1.5E-08 5.2E-13 70.6 5.6 37 215-251 8-44 (53)
58 1vej_A Riken cDNA 4931431F19; 98.7 1.2E-08 4.1E-13 76.1 5.2 41 216-256 29-71 (74)
59 2dna_A Unnamed protein product 98.7 1.1E-08 3.7E-13 75.0 4.1 40 217-256 20-61 (67)
60 2d9s_A CBL E3 ubiquitin protei 98.6 3.8E-08 1.3E-12 68.6 5.5 40 143-182 8-47 (53)
61 2juj_A E3 ubiquitin-protein li 98.6 1.5E-08 5.2E-13 70.9 3.4 36 216-251 7-42 (56)
62 2juj_A E3 ubiquitin-protein li 98.6 4.3E-08 1.5E-12 68.6 4.7 39 144-182 7-45 (56)
63 2oo9_A E3 ubiquitin-protein li 98.6 7.5E-08 2.6E-12 65.0 4.9 34 218-251 6-39 (46)
64 2cwb_A Chimera of immunoglobul 98.5 7.5E-08 2.6E-12 76.6 5.3 40 144-183 66-106 (108)
65 2cos_A Serine/threonine protei 98.5 9.9E-08 3.4E-12 66.6 4.6 40 142-181 7-47 (54)
66 2cos_A Serine/threonine protei 98.5 1.6E-07 5.6E-12 65.5 4.8 40 213-252 6-46 (54)
67 2oo9_A E3 ubiquitin-protein li 98.5 2.5E-07 8.4E-12 62.5 5.2 38 145-182 5-42 (46)
68 3ihp_A Ubiquitin carboxyl-term 98.4 5E-07 1.7E-11 93.6 8.1 82 98-187 677-763 (854)
69 2cwb_A Chimera of immunoglobul 98.4 3.4E-07 1.1E-11 72.9 5.0 40 216-255 66-107 (108)
70 4dbg_B Ring finger protein 31; 98.2 1.4E-06 4.9E-11 73.3 6.4 67 156-255 75-142 (162)
71 1oqy_A HHR23A, UV excision rep 98.2 3.1E-07 1.1E-11 87.0 1.0 42 144-185 325-366 (368)
72 1wj7_A Hypothetical protein (R 98.1 1.9E-06 6.6E-11 68.0 4.8 40 145-184 40-80 (104)
73 3k9o_A Ubiquitin-conjugating e 98.1 2.7E-06 9.1E-11 73.9 5.3 38 145-182 164-201 (201)
74 2cp8_A NEXT to BRCA1 gene 1 pr 98.1 1.9E-06 6.6E-11 60.4 3.5 39 216-254 9-49 (54)
75 2cp8_A NEXT to BRCA1 gene 1 pr 98.0 2.8E-06 9.5E-11 59.6 3.5 40 144-183 9-49 (54)
76 3k9o_A Ubiquitin-conjugating e 98.0 7.7E-06 2.6E-10 70.9 7.0 36 216-251 163-198 (201)
77 2qsf_X RAD23, UV excision repa 98.0 5E-06 1.7E-10 71.0 4.0 40 145-184 131-170 (171)
78 1wj7_A Hypothetical protein (R 97.7 3.1E-05 1.1E-09 61.0 4.8 38 217-254 40-79 (104)
79 2qsf_X RAD23, UV excision repa 97.4 0.00017 6E-09 61.5 5.5 39 216-254 130-169 (171)
80 3e46_A Ubiquitin-conjugating e 97.2 0.00029 9.8E-09 63.5 5.3 37 145-181 216-252 (253)
81 3e46_A Ubiquitin-conjugating e 97.2 0.00057 1.9E-08 61.5 7.0 36 217-252 216-252 (253)
82 4gco_A Protein STI-1; structur 97.1 0.0079 2.7E-07 46.3 11.8 98 4-137 13-110 (126)
83 2cp9_A EF-TS, EF-TSMT, elongat 97.0 0.00091 3.1E-08 48.3 5.3 41 142-182 7-48 (64)
84 3ro3_A PINS homolog, G-protein 96.9 0.024 8E-07 42.2 12.8 146 3-181 8-154 (164)
85 3rkv_A Putative peptidylprolyl 96.9 0.021 7E-07 44.7 12.8 110 3-137 10-126 (162)
86 3gw4_A Uncharacterized protein 96.9 0.052 1.8E-06 42.8 15.1 148 3-183 25-174 (203)
87 1hh8_A P67PHOX, NCF-2, neutrop 96.7 0.03 1E-06 45.0 12.8 97 4-139 6-102 (213)
88 4gcn_A Protein STI-1; structur 96.7 0.014 4.8E-07 44.7 10.2 116 4-152 8-123 (127)
89 3ro3_A PINS homolog, G-protein 96.7 0.037 1.2E-06 41.1 12.0 111 3-137 48-158 (164)
90 3nf1_A KLC 1, kinesin light ch 96.7 0.038 1.3E-06 46.2 13.3 152 4-183 69-222 (311)
91 3edt_B KLC 2, kinesin light ch 96.6 0.043 1.5E-06 45.0 13.0 152 4-183 43-196 (283)
92 3nf1_A KLC 1, kinesin light ch 96.6 0.039 1.3E-06 46.1 12.9 115 4-138 27-141 (311)
93 1q02_A Sequestosome 1; helical 96.5 0.0033 1.1E-07 43.4 4.3 36 218-253 12-49 (52)
94 2cp9_A EF-TS, EF-TSMT, elongat 96.5 0.0036 1.2E-07 45.2 4.8 40 213-252 6-46 (64)
95 4i17_A Hypothetical protein; T 96.4 0.14 4.9E-06 41.7 14.9 131 6-182 9-143 (228)
96 3upv_A Heat shock protein STI1 96.4 0.039 1.3E-06 41.0 10.4 98 4-137 4-101 (126)
97 3ro2_A PINS homolog, G-protein 96.3 0.048 1.6E-06 45.5 11.9 123 4-140 83-215 (338)
98 3q15_A PSP28, response regulat 96.3 0.065 2.2E-06 47.8 13.4 112 6-140 103-214 (378)
99 3ulq_A Response regulator aspa 96.3 0.087 3E-06 46.8 14.2 111 7-140 106-216 (383)
100 2xev_A YBGF; tetratricopeptide 96.3 0.047 1.6E-06 40.1 10.5 103 5-137 3-105 (129)
101 4a1s_A PINS, partner of inscut 96.3 0.1 3.5E-06 46.1 14.4 150 4-185 223-372 (411)
102 1q02_A Sequestosome 1; helical 96.3 0.0029 9.9E-08 43.7 3.1 35 146-180 12-48 (52)
103 1wgl_A TOLL-interacting protei 96.2 0.0067 2.3E-07 43.0 5.0 40 213-252 6-48 (59)
104 3ro2_A PINS homolog, G-protein 96.2 0.075 2.6E-06 44.3 12.4 147 4-182 183-329 (338)
105 1otr_A Protein CUE2; protein-p 96.2 0.0055 1.9E-07 41.9 4.1 40 145-184 5-46 (49)
106 3edt_B KLC 2, kinesin light ch 96.1 0.12 4.1E-06 42.2 13.1 113 4-136 85-197 (283)
107 1wgl_A TOLL-interacting protei 96.1 0.0065 2.2E-07 43.0 4.3 44 141-184 6-51 (59)
108 3sf4_A G-protein-signaling mod 96.1 0.11 3.9E-06 45.1 13.2 148 4-183 187-334 (406)
109 3sz7_A HSC70 cochaperone (SGT) 96.0 0.036 1.2E-06 43.4 8.9 98 4-137 11-108 (164)
110 3gw4_A Uncharacterized protein 96.0 0.091 3.1E-06 41.4 11.3 114 3-139 65-178 (203)
111 3ulq_A Response regulator aspa 95.8 0.31 1.1E-05 43.2 15.4 150 3-183 142-291 (383)
112 3q15_A PSP28, response regulat 95.8 0.42 1.4E-05 42.4 16.1 144 4-181 182-328 (378)
113 4dbg_B Ring finger protein 31; 95.8 0.018 6.1E-07 48.5 6.5 58 115-183 83-142 (162)
114 3sf4_A G-protein-signaling mod 95.8 0.28 9.4E-06 42.6 14.4 147 4-182 127-293 (406)
115 1ihg_A Cyclophilin 40; ppiase 95.8 0.068 2.3E-06 49.1 10.9 109 4-137 223-336 (370)
116 3uq3_A Heat shock protein STI1 95.6 0.33 1.1E-05 39.2 13.6 139 7-181 41-198 (258)
117 3uq3_A Heat shock protein STI1 95.6 0.45 1.6E-05 38.3 14.3 103 4-136 5-107 (258)
118 3q49_B STIP1 homology and U bo 95.6 0.11 3.8E-06 38.4 9.7 98 4-137 9-106 (137)
119 4a1s_A PINS, partner of inscut 95.5 0.21 7.2E-06 44.0 12.9 147 4-182 166-329 (411)
120 1elw_A TPR1-domain of HOP; HOP 95.4 0.37 1.3E-05 33.8 11.7 96 5-136 5-100 (118)
121 3n71_A Histone lysine methyltr 95.4 0.076 2.6E-06 51.4 10.2 124 5-152 310-438 (490)
122 1otr_A Protein CUE2; protein-p 95.3 0.017 5.8E-07 39.5 3.9 35 218-252 6-42 (49)
123 3vtx_A MAMA; tetratricopeptide 95.3 0.11 3.9E-06 40.7 9.5 60 5-78 6-65 (184)
124 1a17_A Serine/threonine protei 95.2 0.22 7.4E-06 37.7 10.4 98 4-137 13-110 (166)
125 1elr_A TPR2A-domain of HOP; HO 95.1 0.52 1.8E-05 33.6 11.8 104 4-136 4-107 (131)
126 2vyi_A SGTA protein; chaperone 95.1 0.39 1.3E-05 34.2 11.1 97 5-137 13-109 (131)
127 2lni_A Stress-induced-phosphop 95.0 0.25 8.6E-06 35.7 10.0 98 4-137 16-113 (133)
128 2yhc_A BAMD, UPF0169 lipoprote 95.0 0.27 9.3E-06 40.6 11.4 62 5-77 5-66 (225)
129 1hz4_A MALT regulatory protein 94.9 0.55 1.9E-05 41.1 13.7 114 5-140 54-167 (373)
130 3ieg_A DNAJ homolog subfamily 94.9 0.53 1.8E-05 39.7 13.2 95 6-136 5-99 (359)
131 3as5_A MAMA; tetratricopeptide 94.9 0.47 1.6E-05 35.9 11.6 127 4-181 8-135 (186)
132 2xcb_A PCRH, regulatory protei 94.8 0.4 1.4E-05 36.6 11.1 97 6-138 20-116 (142)
133 2dba_A Smooth muscle cell asso 94.8 0.32 1.1E-05 35.9 10.2 101 4-137 28-128 (148)
134 2fbn_A 70 kDa peptidylprolyl i 94.6 0.43 1.5E-05 38.2 11.3 108 4-136 38-150 (198)
135 1kt0_A FKBP51, 51 kDa FK506-bi 94.5 0.27 9.1E-06 46.1 11.2 108 4-136 268-379 (457)
136 2gw1_A Mitochondrial precursor 94.5 0.29 9.8E-06 44.1 10.9 96 4-136 6-101 (514)
137 3u4t_A TPR repeat-containing p 94.4 0.34 1.2E-05 39.9 10.5 58 6-77 5-62 (272)
138 3qky_A Outer membrane assembly 94.4 0.61 2.1E-05 38.9 12.2 105 5-139 16-128 (261)
139 1p5q_A FKBP52, FK506-binding p 94.3 0.63 2.2E-05 41.5 12.7 109 4-137 147-259 (336)
140 2ifu_A Gamma-SNAP; membrane fu 94.2 0.52 1.8E-05 41.0 11.7 109 6-139 78-186 (307)
141 2kck_A TPR repeat; tetratricop 94.2 0.63 2.2E-05 32.3 10.1 98 5-136 7-105 (112)
142 2ho1_A Type 4 fimbrial biogene 94.1 0.63 2.1E-05 37.9 11.4 97 4-136 37-133 (252)
143 3qww_A SET and MYND domain-con 94.1 0.16 5.6E-06 48.2 8.8 106 7-136 301-410 (433)
144 3as5_A MAMA; tetratricopeptide 94.0 0.68 2.3E-05 35.0 10.8 127 5-182 43-170 (186)
145 2vq2_A PILW, putative fimbrial 94.0 1.8 6E-05 33.9 13.9 96 5-136 9-105 (225)
146 2y4t_A DNAJ homolog subfamily 93.9 0.62 2.1E-05 41.4 11.8 96 5-136 27-122 (450)
147 3hym_B Cell division cycle pro 93.9 1.3 4.5E-05 36.9 13.3 133 7-181 128-261 (330)
148 2dhy_A CUE domain-containing p 93.8 0.064 2.2E-06 38.8 4.2 38 215-252 17-57 (67)
149 1tr8_A Conserved protein (MTH1 93.8 0.061 2.1E-06 42.0 4.2 39 141-179 62-101 (102)
150 3ieg_A DNAJ homolog subfamily 93.6 0.96 3.3E-05 38.1 11.9 105 5-135 38-147 (359)
151 1aip_C EF-TS, elongation facto 93.5 0.082 2.8E-06 45.9 5.0 38 146-183 5-43 (196)
152 2pwq_A Ubiquitin conjugating e 93.5 0.013 4.5E-07 51.3 0.0 37 145-181 178-214 (216)
153 4b4t_Q 26S proteasome regulato 93.5 0.2 6.7E-06 44.7 7.7 161 7-179 7-198 (434)
154 4eqf_A PEX5-related protein; a 93.4 1.4 4.8E-05 38.1 13.0 25 112-136 217-241 (365)
155 4eqf_A PEX5-related protein; a 93.4 0.85 2.9E-05 39.5 11.5 95 6-136 67-161 (365)
156 3urz_A Uncharacterized protein 93.3 0.41 1.4E-05 39.2 8.9 107 6-137 6-117 (208)
157 1xb2_B EF-TS, elongation facto 93.3 0.083 2.8E-06 48.4 4.9 38 146-183 6-44 (291)
158 2q7f_A YRRB protein; TPR, prot 93.2 1.3 4.5E-05 35.4 11.6 50 4-64 23-72 (243)
159 2fo7_A Synthetic consensus TPR 93.2 1.5 5.3E-05 30.8 13.8 125 6-181 3-128 (136)
160 2pwq_A Ubiquitin conjugating e 93.1 0.017 5.7E-07 50.7 0.0 35 217-251 178-212 (216)
161 2dhy_A CUE domain-containing p 93.1 0.14 4.9E-06 37.0 5.0 41 144-184 18-60 (67)
162 2q7f_A YRRB protein; TPR, prot 93.1 1.7 5.7E-05 34.7 12.1 60 5-78 58-117 (243)
163 2vgx_A Chaperone SYCD; alterna 93.1 1 3.5E-05 35.1 10.5 96 6-137 23-118 (148)
164 1qqe_A Vesicular transport pro 93.0 1.8 6E-05 37.3 12.9 108 8-139 41-149 (292)
165 2xpi_A Anaphase-promoting comp 92.9 1.5 5E-05 40.7 12.9 60 114-181 481-541 (597)
166 1tr8_A Conserved protein (MTH1 92.8 0.15 5.1E-06 39.8 5.1 38 214-251 63-101 (102)
167 1hz4_A MALT regulatory protein 92.7 4.6 0.00016 35.1 15.9 111 4-139 14-124 (373)
168 2l6j_A TPR repeat-containing p 92.7 0.24 8.2E-06 35.0 5.8 99 4-132 4-102 (111)
169 3u3w_A Transcriptional activat 92.6 3 0.0001 35.6 13.8 142 10-181 121-262 (293)
170 1fch_A Peroxisomal targeting s 92.6 2.4 8.2E-05 36.2 13.2 26 111-136 220-245 (368)
171 3gyz_A Chaperone protein IPGC; 92.5 1.1 3.8E-05 35.7 10.1 95 6-136 38-132 (151)
172 1xnf_A Lipoprotein NLPI; TPR, 92.4 3.3 0.00011 33.6 13.2 97 5-137 44-140 (275)
173 1hh8_A P67PHOX, NCF-2, neutrop 92.3 1.3 4.5E-05 35.1 10.4 112 5-137 38-150 (213)
174 3qwp_A SET and MYND domain-con 92.2 0.54 1.9E-05 44.3 9.2 104 9-136 292-399 (429)
175 1hxi_A PEX5, peroxisome target 92.2 0.9 3.1E-05 34.1 8.8 94 6-135 19-112 (121)
176 1na0_A Designed protein CTPR3; 92.0 2.2 7.6E-05 29.8 10.7 97 4-136 9-105 (125)
177 1tte_A Ubiquitin-conjugating e 91.9 0.12 4E-06 45.2 3.9 30 215-244 168-197 (215)
178 1v92_A NSFL1 cofactor P47; 3-h 91.5 0.24 8.1E-06 32.3 4.2 36 219-254 8-45 (46)
179 4g1t_A Interferon-induced prot 91.5 3.6 0.00012 36.8 13.5 76 7-87 54-129 (472)
180 2ho1_A Type 4 fimbrial biogene 91.5 4.6 0.00016 32.5 14.4 125 6-181 73-200 (252)
181 1tte_A Ubiquitin-conjugating e 91.5 0.12 4.2E-06 45.1 3.5 31 142-172 167-197 (215)
182 2qfc_A PLCR protein; TPR, HTH, 91.4 2.4 8.1E-05 36.2 11.7 111 4-137 155-266 (293)
183 2y4t_A DNAJ homolog subfamily 91.4 1.6 5.3E-05 38.7 10.8 95 6-136 145-239 (450)
184 2pl2_A Hypothetical conserved 91.3 5.1 0.00017 32.6 13.3 52 113-180 123-175 (217)
185 2pl2_A Hypothetical conserved 91.1 2.8 9.6E-05 34.2 11.4 59 6-78 7-65 (217)
186 4i17_A Hypothetical protein; T 91.0 2.3 8E-05 34.2 10.7 101 6-135 44-144 (228)
187 2c2l_A CHIP, carboxy terminus 90.8 1.8 6.2E-05 37.3 10.4 98 4-137 4-101 (281)
188 3hym_B Cell division cycle pro 90.5 2.2 7.5E-05 35.6 10.4 104 6-136 195-298 (330)
189 3qwp_A SET and MYND domain-con 90.4 1.2 4.2E-05 41.9 9.6 86 3-98 328-417 (429)
190 2vsy_A XCC0866; transferase, g 90.1 3.4 0.00012 38.9 12.4 97 5-137 24-120 (568)
191 1w3b_A UDP-N-acetylglucosamine 90.0 2.2 7.5E-05 37.3 10.4 49 6-65 69-117 (388)
192 2ifu_A Gamma-SNAP; membrane fu 90.0 2.8 9.5E-05 36.2 11.0 108 7-139 39-146 (307)
193 2if4_A ATFKBP42; FKBP-like, al 89.7 0.71 2.4E-05 41.3 7.0 108 4-136 179-292 (338)
194 3qky_A Outer membrane assembly 89.6 1.3 4.4E-05 36.9 8.1 121 5-140 53-180 (261)
195 3qww_A SET and MYND domain-con 89.4 1.6 5.4E-05 41.4 9.5 86 3-98 339-428 (433)
196 3u3w_A Transcriptional activat 89.4 3.2 0.00011 35.4 10.7 110 5-137 156-266 (293)
197 3vtx_A MAMA; tetratricopeptide 89.4 3.8 0.00013 31.6 10.4 28 6-33 41-68 (184)
198 1ouv_A Conserved hypothetical 89.4 8.2 0.00028 31.9 13.7 57 6-78 8-68 (273)
199 1qqe_A Vesicular transport pro 89.3 9.5 0.00033 32.5 14.0 147 4-182 77-225 (292)
200 4b4t_Q 26S proteasome regulato 89.3 7.1 0.00024 34.4 13.2 130 7-146 58-213 (434)
201 1ixs_A Holliday junction DNA h 88.9 0.8 2.8E-05 32.3 5.4 24 145-168 18-41 (62)
202 2dal_A Protein KIAA0794; FAS a 88.9 0.52 1.8E-05 33.2 4.3 39 218-256 17-57 (62)
203 2qfc_A PLCR protein; TPR, HTH, 88.8 7.6 0.00026 32.9 12.7 103 10-137 121-225 (293)
204 2xpi_A Anaphase-promoting comp 88.5 12 0.00041 34.4 14.7 55 113-181 521-575 (597)
205 4abn_A Tetratricopeptide repea 88.5 4.3 0.00015 37.8 11.7 16 122-137 235-250 (474)
206 3fp2_A TPR repeat-containing p 88.5 1.5 5E-05 39.9 8.2 93 4-132 25-117 (537)
207 4gyw_A UDP-N-acetylglucosamine 88.4 5.4 0.00019 40.1 13.1 95 6-136 11-105 (723)
208 4f3v_A ESX-1 secretion system 88.3 3.2 0.00011 37.4 10.3 42 113-158 213-254 (282)
209 2e2e_A Formate-dependent nitri 88.2 7.1 0.00024 30.0 11.2 97 6-136 46-143 (177)
210 2fo7_A Synthetic consensus TPR 88.1 5.1 0.00018 27.9 10.5 95 6-136 37-131 (136)
211 3u4t_A TPR repeat-containing p 88.0 7.2 0.00025 31.6 11.6 27 6-32 76-102 (272)
212 1w3b_A UDP-N-acetylglucosamine 88.0 6.7 0.00023 34.1 12.0 50 5-65 170-219 (388)
213 2dzl_A Protein FAM100B; UBA-li 87.8 0.83 2.8E-05 32.6 4.9 39 218-256 19-59 (66)
214 3fp2_A TPR repeat-containing p 87.7 2.4 8.1E-05 38.4 9.1 26 7-32 279-304 (537)
215 4abn_A Tetratricopeptide repea 87.6 1.6 5.5E-05 40.7 8.2 97 4-137 102-208 (474)
216 3cv0_A Peroxisome targeting si 87.1 5.7 0.00019 32.9 10.6 95 6-136 23-117 (327)
217 3n71_A Histone lysine methyltr 87.0 2.7 9.2E-05 40.4 9.5 85 3-97 350-438 (490)
218 4ga2_A E3 SUMO-protein ligase 86.9 6.4 0.00022 30.2 10.1 20 115-134 72-91 (150)
219 3cv0_A Peroxisome targeting si 85.9 7.6 0.00026 32.1 10.8 95 7-137 175-269 (327)
220 3ma5_A Tetratricopeptide repea 85.7 4.8 0.00017 28.7 8.3 63 5-81 8-70 (100)
221 1a17_A Serine/threonine protei 85.5 3 0.0001 31.1 7.4 102 6-141 49-150 (166)
222 1p3q_Q VPS9P, vacuolar protein 85.4 0.37 1.2E-05 33.5 1.8 35 218-252 14-51 (54)
223 2vq2_A PILW, putative fimbrial 85.1 12 0.0004 29.0 13.9 97 6-136 44-141 (225)
224 4ga2_A E3 SUMO-protein ligase 84.7 4 0.00014 31.5 7.9 17 48-64 30-46 (150)
225 4fp9_B Mterf domain-containing 84.4 2.4 8.2E-05 39.2 7.4 26 145-170 47-72 (335)
226 2hr2_A Hypothetical protein; a 83.7 17 0.00058 29.8 11.8 119 3-137 10-131 (159)
227 1v92_A NSFL1 cofactor P47; 3-h 83.1 1.5 5.1E-05 28.3 4.0 37 146-182 7-44 (46)
228 2gw1_A Mitochondrial precursor 82.4 15 0.00052 32.6 11.8 38 49-86 186-223 (514)
229 2kc7_A BFR218_protein; tetratr 82.3 7.8 0.00027 26.7 8.0 60 5-78 1-61 (99)
230 1fch_A Peroxisomal targeting s 81.7 2.5 8.7E-05 36.1 6.1 82 6-90 287-368 (368)
231 1elw_A TPR1-domain of HOP; HOP 80.9 7.7 0.00026 26.6 7.5 48 6-64 40-87 (118)
232 2xev_A YBGF; tetratricopeptide 80.8 7.4 0.00025 27.8 7.7 65 5-80 40-104 (129)
233 1ixs_A Holliday junction DNA h 80.6 1.6 5.5E-05 30.7 3.6 24 217-240 18-41 (62)
234 1xnf_A Lipoprotein NLPI; TPR, 80.4 7.6 0.00026 31.4 8.4 61 6-80 79-139 (275)
235 4gyw_A UDP-N-acetylglucosamine 80.2 5 0.00017 40.4 8.5 97 5-137 44-140 (723)
236 1na3_A Designed protein CTPR2; 79.8 11 0.00037 25.0 8.1 60 5-78 10-69 (91)
237 2dam_A ETEA protein; KIAA0887, 79.8 2.4 8.2E-05 30.2 4.4 37 218-254 20-59 (67)
238 1wao_1 Serine/threonine protei 79.2 3.4 0.00012 38.9 6.5 98 4-137 6-103 (477)
239 2di0_A Activating signal coint 78.8 3.2 0.00011 30.3 4.8 37 146-182 15-53 (71)
240 2yhc_A BAMD, UPF0169 lipoprote 78.6 25 0.00084 28.4 12.4 147 6-179 43-207 (225)
241 2dal_A Protein KIAA0794; FAS a 77.5 2.7 9.3E-05 29.3 4.1 38 146-183 17-55 (62)
242 3k9i_A BH0479 protein; putativ 76.2 16 0.00055 26.2 8.4 61 5-79 28-88 (117)
243 3mkr_A Coatomer subunit epsilo 75.5 34 0.0012 29.3 11.6 56 6-80 103-158 (291)
244 2qho_B E3 ubiquitin-protein li 75.2 6.2 0.00021 26.8 5.1 41 215-255 8-51 (53)
245 4g1t_A Interferon-induced prot 75.2 43 0.0015 29.5 13.3 139 6-181 249-397 (472)
246 2h6f_A Protein farnesyltransfe 73.2 54 0.0019 29.8 14.1 56 115-173 207-275 (382)
247 2v5f_A Prolyl 4-hydroxylase su 72.9 15 0.00051 26.6 7.4 68 4-78 5-72 (104)
248 1na0_A Designed protein CTPR3; 72.6 18 0.00063 24.7 7.6 59 6-78 45-103 (125)
249 3mkq_A Coatomer beta'-subunit; 72.4 8.7 0.0003 37.0 7.5 31 65-97 687-717 (814)
250 2kat_A Uncharacterized protein 72.3 23 0.00078 25.0 8.3 65 5-83 20-84 (115)
251 2kck_A TPR repeat; tetratricop 72.3 12 0.0004 25.4 6.4 60 6-77 42-102 (112)
252 2vyi_A SGTA protein; chaperone 72.2 20 0.00067 24.8 7.8 61 5-79 47-107 (131)
253 3urz_A Uncharacterized protein 72.0 7.3 0.00025 31.4 6.0 45 9-64 59-103 (208)
254 3avx_A Elongation factor TS, e 71.3 0.74 2.5E-05 49.7 -0.3 41 143-183 4-45 (1289)
255 3m66_A Mterf3, mterf domain-co 71.3 18 0.00061 31.4 8.7 158 82-251 11-190 (270)
256 1klx_A Cysteine rich protein B 71.1 11 0.00038 28.7 6.6 106 17-181 8-122 (138)
257 2h6f_A Protein farnesyltransfe 71.0 15 0.00051 33.6 8.5 96 6-136 99-194 (382)
258 1ouv_A Conserved hypothetical 70.8 42 0.0014 27.4 14.3 91 6-136 40-142 (273)
259 3mv2_B Coatomer subunit epsilo 70.6 37 0.0013 30.7 11.0 101 7-137 103-207 (310)
260 2dam_A ETEA protein; KIAA0887, 70.4 5.9 0.0002 28.1 4.4 38 146-183 20-59 (67)
261 2e2e_A Formate-dependent nitri 70.3 6 0.0002 30.4 4.9 122 10-181 16-140 (177)
262 3e21_A HFAF1, FAS-associated f 68.8 4.8 0.00016 26.7 3.3 33 145-177 6-40 (45)
263 3upv_A Heat shock protein STI1 68.6 24 0.00083 25.2 7.8 64 5-82 39-102 (126)
264 1zza_A Stannin, AG8_1; helix, 68.5 0.97 3.3E-05 33.4 -0.1 19 53-71 31-49 (90)
265 2qho_B E3 ubiquitin-protein li 68.3 13 0.00043 25.3 5.3 43 142-184 7-51 (53)
266 3sz7_A HSC70 cochaperone (SGT) 68.3 22 0.00074 27.0 7.8 60 5-78 46-105 (164)
267 2vsy_A XCC0866; transferase, g 67.7 44 0.0015 31.2 11.1 96 6-137 59-157 (568)
268 2lni_A Stress-induced-phosphop 66.8 21 0.00071 25.0 6.9 59 6-78 52-110 (133)
269 2di0_A Activating signal coint 66.0 11 0.00037 27.4 5.0 36 218-253 15-53 (71)
270 3k9i_A BH0479 protein; putativ 65.8 16 0.00054 26.2 6.2 88 17-137 3-90 (117)
271 2dba_A Smooth muscle cell asso 64.7 35 0.0012 24.4 8.0 61 4-78 65-125 (148)
272 1cuk_A RUVA protein; DNA repai 64.7 6.4 0.00022 33.8 4.3 24 145-168 161-184 (203)
273 2xcb_A PCRH, regulatory protei 64.5 29 0.001 25.7 7.7 62 6-81 54-115 (142)
274 3mkr_A Coatomer subunit epsilo 63.8 69 0.0024 27.3 17.1 97 7-137 133-229 (291)
275 3e7l_A Transcriptional regulat 63.4 3.7 0.00012 28.2 2.1 25 228-252 19-43 (63)
276 2dzl_A Protein FAM100B; UBA-li 63.2 6.9 0.00023 27.8 3.5 39 146-184 19-58 (66)
277 2ztd_A Holliday junction ATP-d 62.8 12 0.00039 32.5 5.6 24 145-168 165-188 (212)
278 2pzi_A Probable serine/threoni 62.4 13 0.00045 36.4 6.6 113 6-134 435-560 (681)
279 1p3q_Q VPS9P, vacuolar protein 62.3 2.7 9.2E-05 29.1 1.2 38 145-182 13-52 (54)
280 1elr_A TPR2A-domain of HOP; HO 62.2 36 0.0012 23.5 7.9 68 5-79 39-106 (131)
281 2vgx_A Chaperone SYCD; alterna 61.1 35 0.0012 26.0 7.7 60 6-79 57-116 (148)
282 3q49_B STIP1 homology and U bo 60.8 42 0.0014 23.9 7.8 63 5-81 44-106 (137)
283 4gco_A Protein STI-1; structur 59.1 43 0.0015 24.7 7.8 60 5-78 48-107 (126)
284 3gyz_A Chaperone protein IPGC; 57.3 38 0.0013 26.4 7.5 62 5-80 71-132 (151)
285 2xm6_A Protein corresponding t 56.4 92 0.0031 28.2 10.9 50 115-181 370-428 (490)
286 2l6j_A TPR repeat-containing p 55.8 25 0.00085 24.0 5.5 55 6-65 40-94 (111)
287 1umq_A Photosynthetic apparatu 55.6 5.7 0.00019 29.3 2.0 25 228-252 41-65 (81)
288 3rjv_A Putative SEL1 repeat pr 55.5 78 0.0027 25.3 11.1 59 6-78 20-79 (212)
289 1cuk_A RUVA protein; DNA repai 54.2 14 0.00049 31.5 4.7 24 217-240 161-184 (203)
290 1p5q_A FKBP52, FK506-binding p 53.0 1.1E+02 0.0039 26.5 10.6 80 48-137 146-225 (336)
291 3e21_A HFAF1, FAS-associated f 52.2 16 0.00054 24.1 3.6 33 218-250 7-41 (45)
292 4gcn_A Protein STI-1; structur 50.8 47 0.0016 24.4 6.7 66 5-77 43-108 (127)
293 2ztd_A Holliday junction ATP-d 49.9 20 0.00069 30.9 4.9 24 217-240 165-188 (212)
294 2lva_A Ubiquitin carboxyl-term 55.2 3.5 0.00012 33.2 0.0 36 219-254 21-58 (129)
295 2fbn_A 70 kDa peptidylprolyl i 49.0 70 0.0024 24.8 7.8 60 5-78 89-148 (198)
296 2xm6_A Protein corresponding t 48.9 1.5E+02 0.0052 26.7 12.4 59 7-78 42-105 (490)
297 3mva_O Transcription terminati 48.7 23 0.00077 32.1 5.3 19 220-238 127-145 (343)
298 2r5s_A Uncharacterized protein 46.8 93 0.0032 23.7 10.4 57 7-77 9-65 (176)
299 3mva_O Transcription terminati 46.4 1.1E+02 0.0037 27.4 9.6 15 225-239 249-263 (343)
300 2km4_A Regulator of TY1 transp 45.8 21 0.00072 28.4 4.1 34 154-187 1-37 (142)
301 3mkq_B Coatomer subunit alpha; 45.3 92 0.0031 26.0 8.2 50 13-68 14-66 (177)
302 1ihg_A Cyclophilin 40; ppiase 43.8 64 0.0022 28.9 7.6 62 5-80 274-335 (370)
303 2lva_A Ubiquitin carboxyl-term 49.6 4.9 0.00017 32.3 0.0 39 147-185 21-61 (129)
304 3bq3_A Defective in cullin ned 43.0 14 0.00049 33.0 3.0 39 218-256 17-57 (270)
305 1ntc_A Protein (nitrogen regul 42.4 8.3 0.00028 28.3 1.1 25 228-252 51-75 (91)
306 1g2h_A Transcriptional regulat 41.6 13 0.00045 25.2 2.0 24 228-252 21-44 (61)
307 1xi4_A Clathrin heavy chain; a 41.1 3.4E+02 0.012 30.3 13.6 131 6-169 1107-1248(1630)
308 2uwj_G Type III export protein 41.1 32 0.0011 27.0 4.3 46 11-75 46-91 (115)
309 1vdl_A Ubiquitin carboxyl-term 40.9 17 0.00058 26.8 2.5 37 147-183 27-65 (80)
310 1ufz_A Hypothetical protein BA 39.8 51 0.0017 24.6 5.0 36 148-183 41-76 (83)
311 1eto_A FIS, factor for inversi 39.7 14 0.00048 27.9 2.1 25 228-252 58-82 (98)
312 2wpv_A GET4, UPF0363 protein Y 38.7 2E+02 0.0069 25.9 10.1 113 11-132 40-158 (312)
313 1na3_A Designed protein CTPR2; 38.3 63 0.0022 21.0 5.2 28 6-33 45-72 (91)
314 2ooe_A Cleavage stimulation fa 37.1 2.4E+02 0.0083 25.6 12.8 95 8-137 325-420 (530)
315 2c2l_A CHIP, carboxy terminus 36.5 1.1E+02 0.0038 25.7 7.6 64 5-82 39-102 (281)
316 3dfg_A Xcrecx, regulatory prot 36.2 65 0.0022 26.0 5.8 22 218-239 137-158 (162)
317 4b4t_R RPN7, 26S proteasome re 35.9 1.4E+02 0.0047 27.6 8.7 105 3-134 130-234 (429)
318 3m66_A Mterf3, mterf domain-co 35.7 32 0.0011 29.7 4.0 37 146-182 43-86 (270)
319 1b89_A Protein (clathrin heavy 35.1 44 0.0015 32.0 5.2 129 8-172 36-177 (449)
320 3ma5_A Tetratricopeptide repea 34.5 78 0.0027 22.0 5.4 57 112-182 11-67 (100)
321 1vdl_A Ubiquitin carboxyl-term 33.0 34 0.0012 25.2 3.0 36 219-254 27-64 (80)
322 2w84_A Peroxisomal membrane pr 32.8 92 0.0032 22.4 5.3 30 215-244 34-63 (70)
323 1ixr_A Holliday junction DNA h 32.7 9.3 0.00032 32.5 0.0 24 145-168 147-170 (191)
324 2vkj_A TM1634; membrane protei 31.7 35 0.0012 26.1 3.1 25 6-30 55-79 (106)
325 1b89_A Protein (clathrin heavy 31.4 26 0.0009 33.6 2.9 47 6-64 63-109 (449)
326 1wao_1 Serine/threonine protei 31.4 1.3E+02 0.0045 27.8 7.8 61 5-79 41-101 (477)
327 3qou_A Protein YBBN; thioredox 31.3 2.3E+02 0.0079 23.7 10.4 59 6-78 119-177 (287)
328 2if4_A ATFKBP42; FKBP-like, al 31.1 74 0.0025 27.8 5.7 63 6-89 232-294 (338)
329 1xi4_A Clathrin heavy chain; a 30.8 81 0.0028 35.0 6.8 21 11-31 1056-1076(1630)
330 2pzi_A Probable serine/threoni 30.6 1.2E+02 0.0042 29.4 7.7 51 6-67 469-519 (681)
331 1oai_A Nuclear RNA export fact 30.5 21 0.00072 24.6 1.6 27 227-253 19-45 (59)
332 3bee_A Putative YFRE protein; 30.5 53 0.0018 23.6 3.9 28 113-140 48-75 (93)
333 3rkv_A Putative peptidylprolyl 29.7 1.7E+02 0.0058 21.6 7.9 60 5-78 64-123 (162)
334 3rjv_A Putative SEL1 repeat pr 29.7 66 0.0022 25.8 4.8 20 115-134 25-44 (212)
335 3k6g_A Telomeric repeat-bindin 29.0 64 0.0022 25.1 4.2 37 220-256 17-54 (111)
336 1kt0_A FKBP51, 51 kDa FK506-bi 28.8 3.3E+02 0.011 24.7 11.3 81 47-137 266-346 (457)
337 1hxi_A PEX5, peroxisome target 28.5 1.6E+02 0.0056 21.1 7.0 60 6-86 53-112 (121)
338 2kc7_A BFR218_protein; tetratr 27.5 49 0.0017 22.3 3.1 29 6-34 37-65 (99)
339 4b4t_O 26S proteasome regulato 27.2 65 0.0022 29.7 4.8 72 16-90 88-165 (393)
340 2hr2_A Hypothetical protein; a 27.1 1.4E+02 0.005 24.1 6.4 29 5-33 58-86 (159)
341 2wx3_A MRNA-decapping enzyme 1 26.4 49 0.0017 22.5 2.7 25 11-35 7-31 (51)
342 3ip4_B Aspartyl/glutamyl-tRNA( 26.0 4.5E+02 0.015 25.3 11.4 97 135-249 289-405 (483)
343 1nri_A Hypothetical protein HI 25.8 15 0.00051 32.8 0.1 24 226-249 282-305 (306)
344 4g3o_A E3 ubiquitin-protein li 25.8 1E+02 0.0036 21.3 4.4 33 219-252 20-55 (58)
345 3e4b_A ALGK; tetratricopeptide 25.5 3.7E+02 0.013 24.2 11.2 22 9-30 181-205 (452)
346 3h0l_B Aspartyl/glutamyl-tRNA( 25.3 4.6E+02 0.016 25.2 12.2 98 134-249 291-408 (478)
347 2kat_A Uncharacterized protein 25.1 1.7E+02 0.0059 20.1 7.2 65 47-136 17-81 (115)
348 3e3v_A Regulatory protein RECX 25.1 1.9E+02 0.0065 23.5 6.9 22 218-239 141-162 (177)
349 2oo2_A Hypothetical protein AF 24.4 63 0.0021 24.1 3.3 28 3-30 34-61 (86)
350 2pmr_A Uncharacterized protein 24.2 63 0.0022 24.1 3.3 28 3-30 38-65 (87)
351 1ixr_A Holliday junction DNA h 24.1 16 0.00055 30.9 0.0 24 217-240 147-170 (191)
352 4b4t_P 26S proteasome regulato 24.1 4.3E+02 0.015 24.4 11.2 100 11-134 144-244 (445)
353 3o10_A Sacsin; all-helical dom 23.8 1.2E+02 0.0041 23.9 5.2 22 156-181 114-135 (141)
354 2p58_C Putative type III secre 23.6 38 0.0013 26.6 2.0 46 11-75 47-92 (116)
355 3ff5_A PEX14P, peroxisomal bio 23.4 1.3E+02 0.0046 20.4 4.6 26 215-240 29-54 (54)
356 3bq3_A Defective in cullin ned 22.9 86 0.0029 27.9 4.5 39 146-184 17-56 (270)
357 3c1d_A Protein ORAA, regulator 22.9 1.3E+02 0.0045 24.0 5.3 22 218-239 135-156 (159)
358 3ph0_C ASCG; type III secretio 22.9 23 0.00077 24.9 0.5 15 11-25 47-61 (61)
359 2kna_A Baculoviral IAP repeat- 22.6 1.5E+02 0.0051 22.4 5.3 38 146-183 29-73 (104)
360 1m9i_A Annexin VI; calcium-bin 22.3 4.5E+02 0.015 26.2 10.1 157 74-252 284-462 (672)
361 3k1s_A PTS system, cellobiose- 22.0 52 0.0018 25.5 2.5 28 10-37 28-55 (109)
362 4fp9_B Mterf domain-containing 21.8 68 0.0023 29.3 3.7 25 218-242 48-72 (335)
363 3kfu_F Aspartyl/glutamyl-tRNA( 21.7 2.1E+02 0.0072 27.6 7.2 79 144-238 291-386 (466)
364 2e2a_A Protein (enzyme IIA); h 21.6 79 0.0027 24.2 3.5 27 11-37 27-53 (105)
365 2jp7_A MRNA export factor MEX6 21.4 78 0.0027 21.7 3.1 28 227-254 18-45 (57)
366 1wcr_A PTS system, N, N'-diace 21.1 83 0.0028 24.1 3.5 27 11-37 25-51 (103)
367 3l8r_A PTCA, putative PTS syst 21.0 56 0.0019 25.8 2.5 28 10-37 43-70 (120)
368 2pfx_A Uncharacterized peroxid 20.7 2E+02 0.0069 23.1 6.1 26 142-167 139-164 (191)
369 3ax2_A Mitochondrial import re 20.5 74 0.0025 22.9 2.9 28 9-39 22-49 (73)
370 3ku8_A GYRA14, DNA gyrase subu 20.5 50 0.0017 27.2 2.3 24 108-132 34-57 (156)
371 1q08_A Zn(II)-responsive regul 20.2 1.8E+02 0.0062 20.7 5.2 42 146-187 7-52 (99)
372 3t9o_A DGC, diguanylate cyclas 20.1 27 0.00091 27.6 0.5 42 7-54 83-129 (135)
No 1
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=99.89 E-value=4.1e-23 Score=168.50 Aligned_cols=104 Identities=20% Similarity=0.334 Sum_probs=83.9
Q ss_pred CChhhHhhHHhCCCCHHHHHHHHHHhCC-CHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHhhcCCCC--CC-------
Q 024447 143 VPDESLSLVMSMGFKEQDAKRALRICSQ-DVGSAIDFLVEEKAKRVKEREDNEQRRKEIMEQKRYGLTP--LK------- 212 (267)
Q Consensus 143 vd~~~l~~L~~MGF~~~~Ar~ALr~~~g-dve~A~~wL~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~--~~------- 212 (267)
+|++.|++|++|||++..|++||+.|+| |++.|++||++|+++++...+ . ....+..+. ..
T Consensus 2 ~d~~~l~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~~~~d~di~ep------l---~~~~~~s~~~~~~~~l~~~~ 72 (126)
T 2lbc_A 2 IDESSVMQLAEMGFPLEACRKAVYFTGNMGAEVAFNWIIVHMEEPDFAEP------L---TMPGYGGAASAGASVFGASG 72 (126)
T ss_dssp CCTHHHHHHHTTSSCCHHHHHHHHHHTSCCHHHHHHHHHHGGGCSSSSCT------T---CCSSCCSSSSSCCCCSTTSS
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHHhccccccccc------c---cccccccccccchhhhcccc
Confidence 6899999999999999999999999976 899999999999998754211 0 000111111 00
Q ss_pred -Cc-CCHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHh-ccCCC
Q 024447 213 -KA-VDIEKIKELVSIGFEKELVAEALRRNENDSQKALDD-LTNPE 255 (267)
Q Consensus 213 -~~-vd~e~v~~L~~MGF~~~~A~~ALr~t~ndve~Aldl-L~~pd 255 (267)
.+ ++++.|.+|++|||+++.|++||+.|+||+++|++| ++|++
T Consensus 73 ~~~~~~e~~v~~L~~MGF~~~~a~~AL~~~~~~~e~A~e~L~~~~~ 118 (126)
T 2lbc_A 73 LDNQPPEEIVAIITSMGFQRNQAIQALRATNNNLERALDWIFSHPE 118 (126)
T ss_dssp CCCCCCHHHHHHHHHHTSCHHHHHHHHHHHTSCHHHHHHHHHTCCS
T ss_pred cccCcCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 23 899999999999999999999999999999999995 56777
No 2
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=99.89 E-value=2.6e-23 Score=168.67 Aligned_cols=103 Identities=19% Similarity=0.282 Sum_probs=80.6
Q ss_pred ChhhHhhHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHhhhh--hhhhhhhhhHHHHHHHHHHhhcCCCCCCCcCCHHHHH
Q 024447 144 PDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKA--KRVKEREDNEQRRKEIMEQKRYGLTPLKKAVDIEKIK 221 (267)
Q Consensus 144 d~~~l~~L~~MGF~~~~Ar~ALr~~~gdve~A~~wL~~~~~--d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~vd~e~v~ 221 (267)
+.+.|++|++||||+..|++||+.||||+++|++||++|++ ++.... .+.+.+.+ .++.+....++++++|+
T Consensus 8 e~~~v~~l~~MGFp~~~~~kAl~~~g~~~e~amewL~~h~~L~d~~~d~-~~~e~~l~-----~~~~~~~~~~~~~~~v~ 81 (118)
T 4ae4_A 8 ERQCVETVVNMGYSYECVLRAMKAAGANIEQILDYLFAHGQLCEKGFDP-LLVEEALE-----MHQCSEEKMMEFLQLMS 81 (118)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHTTCCH-HHHHHHHH-----HCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHCcCHHHHHHHHHHhchhcccCCCh-hhhHHHHH-----hccCCccccccCHHHHH
Confidence 34789999999999999999999999999999999999973 221110 01122222 12222333567899999
Q ss_pred HHHhCCCCHHHHHHHHHHcCCCHHHHHHhcc
Q 024447 222 ELVSIGFEKELVAEALRRNENDSQKALDDLT 252 (267)
Q Consensus 222 ~L~~MGF~~~~A~~ALr~t~ndve~AldlL~ 252 (267)
+|++|||++++|++||+.|+||+++|+|||.
T Consensus 82 ~L~eMGF~~~~a~~AL~~~~nd~erAlewL~ 112 (118)
T 4ae4_A 82 KFKEMGFELKDIKEVLLLHNNDQDNALEDLM 112 (118)
T ss_dssp HHHHTTCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 9999999999999999999999999999875
No 3
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.56 E-value=7e-16 Score=146.19 Aligned_cols=115 Identities=20% Similarity=0.252 Sum_probs=81.9
Q ss_pred CChhhHhhHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHhhhhhhhh----------------------------------
Q 024447 143 VPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKAKRVK---------------------------------- 188 (267)
Q Consensus 143 vd~~~l~~L~~MGF~~~~Ar~ALr~~~gdve~A~~wL~~~~~d~~~---------------------------------- 188 (267)
.+++.|++|++|||++.+|++||++++||+++|++||++++.+...
T Consensus 167 ~~~~~i~~l~~MGf~~~~~~~AL~a~~nn~~~A~e~L~~gip~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~~pqf 246 (368)
T 1oqy_A 167 EYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIPGSPEPEHGSVQESQVSEQPATEAAGENPLEFLRDQPQF 246 (368)
T ss_dssp THHHHHHHHHTTTCCSHHHHHHHHHSCSSTTHHHHTTTTSSTTCSSCCCCCCCCCCSSCCCCSSCCSCCTTHHHHHSHHH
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCcccccccCCccccccccccCccccccchHHHHhcChHH
Confidence 3678999999999999999999999999999999999998765310
Q ss_pred --------------------hhhhhH----------HHHHH-HHHHhhc-CCC-------------C------CCCcCCH
Q 024447 189 --------------------EREDNE----------QRRKE-IMEQKRY-GLT-------------P------LKKAVDI 217 (267)
Q Consensus 189 --------------------~~~~~~----------e~~~~-~~~~~~~-~~~-------------~------~~~~vd~ 217 (267)
+.+.++ +.... +.++... +.. . .-...+.
T Consensus 247 ~~lR~~vq~nP~~l~~~lq~l~~~nP~l~~~I~~n~~~Fl~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~t~ee~ 326 (368)
T 1oqy_A 247 QNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEVGAIGEEAPQMNYIQVTPQEK 326 (368)
T ss_dssp HHHHHSTTTCTTHHHHHHTTTTTTCHHHHHHHHHHHHHHHHHHHSCCCCSCSSCCCSSSSCCCSCCCTTCSSCCCCTTTH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhhCHHHHHHHHHCHHHHHHHHcCcccccccccccccccccccccCCccccccCCCcCH
Confidence 000000 00000 0000000 000 0 0113488
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHh-ccCCCcc
Q 024447 218 EKIKELVSIGFEKELVAEALRRNENDSQKALDD-LTNPESN 257 (267)
Q Consensus 218 e~v~~L~~MGF~~~~A~~ALr~t~ndve~Aldl-L~~pd~~ 257 (267)
+.|++|++|||++.+|++||+.|+||+++|++| |+|+++.
T Consensus 327 eaI~rL~~mGF~~~~a~~al~a~~~n~e~A~~~L~~~~~d~ 367 (368)
T 1oqy_A 327 EAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNFDD 367 (368)
T ss_dssp HHHHHHHHHTCCSHHHHHHTSSSSSCSSHHHHHHHHHHCCC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHhhCcCcC
Confidence 999999999999999999999999999999995 5677753
No 4
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.54 E-value=4.7e-16 Score=116.05 Aligned_cols=69 Identities=20% Similarity=0.290 Sum_probs=56.5
Q ss_pred HHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHhhcCCCCCCCcCCHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHH-hc
Q 024447 173 GSAIDFLVEEKAKRVKEREDNEQRRKEIMEQKRYGLTPLKKAVDIEKIKELVSIGFEKELVAEALRRNENDSQKALD-DL 251 (267)
Q Consensus 173 e~A~~wL~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~vd~e~v~~L~~MGF~~~~A~~ALr~t~ndve~Ald-lL 251 (267)
+.|++||++|++|++...+ . +.....|++++|++|++|||++.+|++||+.|+||+++|++ +|
T Consensus 2 ~~am~wl~~h~dDpd~d~p------------l----~~~~~~~~~~~v~~L~~MGF~~~~a~~AL~~t~~nve~Ave~L~ 65 (73)
T 1wiv_A 2 SSGSSGLLSHMDDPDIDAP------------I----SHQTSDIDQSSVDTLLSFGFAEDVARKALKASGGDIEKATDWVF 65 (73)
T ss_dssp CCCCCCCSSCCSCSCSSCC------------S----CCSSCSSCHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred hHHHHHHHHcCCCCCccCC------------C----CCCCCCCCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4589999999999975421 1 11134589999999999999999999999999999999999 56
Q ss_pred cCCCcc
Q 024447 252 TNPESN 257 (267)
Q Consensus 252 ~~pd~~ 257 (267)
+||++.
T Consensus 66 ~~~~d~ 71 (73)
T 1wiv_A 66 NNSGPS 71 (73)
T ss_dssp HSCCSS
T ss_pred hCCCCC
Confidence 788764
No 5
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=99.53 E-value=9.6e-15 Score=151.04 Aligned_cols=111 Identities=14% Similarity=0.230 Sum_probs=83.9
Q ss_pred cCCCChhhHhhHHhCCCCHHHHHHHHHHhCC-CHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHhhcCCCCC---CCcC
Q 024447 140 QLQVPDESLSLVMSMGFKEQDAKRALRICSQ-DVGSAIDFLVEEKAKRVKEREDNEQRRKEIMEQKRYGLTPL---KKAV 215 (267)
Q Consensus 140 ~l~vd~~~l~~L~~MGF~~~~Ar~ALr~~~g-dve~A~~wL~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~---~~~v 215 (267)
.+.+|++.+++|++|||++..|++|+.+++| +++.|++||++|++|++...+-.... ..+.++. ...+
T Consensus 648 ~~~~d~~~l~~L~~mGf~~~~~~kal~~t~n~~~e~a~~wl~~hmdd~di~~p~~~~~--------~~~~~s~~~~~~~~ 719 (854)
T 3ihp_A 648 APMLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPLILPG--------SSGPGSTSAAADPP 719 (854)
T ss_dssp -----CHHHHHHHHHTCCHHHHHHHHHHTTSCCHHHHHHHHHHHTTSCGGGSCCCCC----------------------C
T ss_pred ccCcCHHHHHHHHhcCCCHHHHHHHHhhcCCCchHHHhHHHhhccCcccccccccccc--------cccccccccccCCC
Confidence 4567889999999999999999999999977 69999999999999987543211000 0001111 1357
Q ss_pred CHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHH-hccCCCcch
Q 024447 216 DIEKIKELVSIGFEKELVAEALRRNENDSQKALD-DLTNPESNS 258 (267)
Q Consensus 216 d~e~v~~L~~MGF~~~~A~~ALr~t~ndve~Ald-lL~~pd~~~ 258 (267)
+++.|.+|.+|||+.++|++||+.++||+++|++ +++||++..
T Consensus 720 ~~e~i~~l~~mGf~~~~a~~aL~~t~~~~eraidwlfs~~d~~~ 763 (854)
T 3ihp_A 720 PEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSHIDDLD 763 (854)
T ss_dssp CHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHhhcCcHHHHHHhhhcCccccc
Confidence 9999999999999999999999999999999999 567887654
No 6
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.48 E-value=7.3e-15 Score=109.57 Aligned_cols=66 Identities=20% Similarity=0.277 Sum_probs=57.4
Q ss_pred HhhhhccCCchhHhhhhHhhHhhhccCCCChhhHhhHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHhhhhhh
Q 024447 115 GVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKAKR 186 (267)
Q Consensus 115 g~v~~h~g~~d~A~~~l~~a~~~~~~l~vd~~~l~~L~~MGF~~~~Ar~ALr~~~gdve~A~~wL~~~~~d~ 186 (267)
.|+.-|+.+++...++.. ....+++++|++|++|||++.+|++||++|+||+++|++||++|++++
T Consensus 6 ~wl~~h~dDpd~d~pl~~------~~~~~~~~~v~~L~~MGF~~~~a~~AL~~t~~nve~Ave~L~~~~~d~ 71 (73)
T 1wiv_A 6 SGLLSHMDDPDIDAPISH------QTSDIDQSSVDTLLSFGFAEDVARKALKASGGDIEKATDWVFNNSGPS 71 (73)
T ss_dssp CCCSSCCSCSCSSCCSCC------SSCSSCHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHHSCCSS
T ss_pred HHHHHcCCCCCccCCCCC------CCCCCCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHhCCCCC
Confidence 789999999887766433 123579999999999999999999999999999999999999998764
No 7
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.44 E-value=5.4e-14 Score=100.89 Aligned_cols=42 Identities=17% Similarity=0.385 Sum_probs=39.2
Q ss_pred ChhhHhhHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHhhhhh
Q 024447 144 PDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKAK 185 (267)
Q Consensus 144 d~~~l~~L~~MGF~~~~Ar~ALr~~~gdve~A~~wL~~~~~d 185 (267)
.++.|++|++|||++++|++||++|+||||+|++|||+|++-
T Consensus 19 e~e~V~~LvsMGFs~~qA~kALKat~~NvErAaDWLFSH~D~ 60 (63)
T 1wgn_A 19 ERQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFAHSGP 60 (63)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCSCHHHHHHHHHHHSCC
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence 457899999999999999999999999999999999999853
No 8
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.40 E-value=9.5e-14 Score=101.03 Aligned_cols=49 Identities=24% Similarity=0.339 Sum_probs=44.2
Q ss_pred hccCCCChhhHhhHHhCCCCHHHHHHHHHHhCC-CHHHHHHHHHhhhhhhh
Q 024447 138 FFQLQVPDESLSLVMSMGFKEQDAKRALRICSQ-DVGSAIDFLVEEKAKRV 187 (267)
Q Consensus 138 ~~~l~vd~~~l~~L~~MGF~~~~Ar~ALr~~~g-dve~A~~wL~~~~~d~~ 187 (267)
+.++ ++++.|++|++|||++.+|++||++|+| |++.|++||++|+++++
T Consensus 14 ya~~-~~e~~i~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewL~~~~~d~d 63 (64)
T 2cpw_A 14 PGTI-KHGSALDVLLSMGFPRARAQKALASTGGRSVQTACDWLFSHSGPSS 63 (64)
T ss_dssp SCSS-SCCCHHHHHHHHTCCHHHHHHHHHHTTTSCHHHHHHHHHSCCSCCC
T ss_pred cccc-CCHHHHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCC
Confidence 3344 7889999999999999999999999998 99999999999998764
No 9
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.38 E-value=2.7e-13 Score=98.59 Aligned_cols=48 Identities=25% Similarity=0.395 Sum_probs=44.5
Q ss_pred CCCChhhHhhHHhCCCCHHHHHHHHHHh-CCCHHHHHHHHHhhhhhhhh
Q 024447 141 LQVPDESLSLVMSMGFKEQDAKRALRIC-SQDVGSAIDFLVEEKAKRVK 188 (267)
Q Consensus 141 l~vd~~~l~~L~~MGF~~~~Ar~ALr~~-~gdve~A~~wL~~~~~d~~~ 188 (267)
..++++.|++|++|||++.+|++||++| +||++.|++||++|+++++.
T Consensus 6 ~~~~~~~v~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewLl~~~~d~d~ 54 (64)
T 1whc_A 6 SGAELTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDV 54 (64)
T ss_dssp CCCCCCHHHHHHTTTCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTCSCT
T ss_pred CCCCHHHHHHHHHcCCCHHHHHHHHHHhcCCCHHHHHHHHHhCCCCccc
Confidence 4679999999999999999999999999 68999999999999988764
No 10
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.37 E-value=2.9e-13 Score=98.51 Aligned_cols=49 Identities=18% Similarity=0.250 Sum_probs=45.0
Q ss_pred CCCChhhHhhHHhCCCCHHHHHHHHHHhCC-CHHHHHHHHHhhhhhhhhh
Q 024447 141 LQVPDESLSLVMSMGFKEQDAKRALRICSQ-DVGSAIDFLVEEKAKRVKE 189 (267)
Q Consensus 141 l~vd~~~l~~L~~MGF~~~~Ar~ALr~~~g-dve~A~~wL~~~~~d~~~~ 189 (267)
-.++++.|++|++|||++..|++||++|+| |++.|++||++|++|++..
T Consensus 6 ~~~~e~~v~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~h~~d~d~d 55 (64)
T 2crn_A 6 SGSSPSLLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHDHCNDPSLD 55 (64)
T ss_dssp CCCSCSSHHHHHHTSCCHHHHHHHHHHHTSCCHHHHHHHHHHHSSSTTSC
T ss_pred CCCCHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCcccc
Confidence 456889999999999999999999999988 9999999999999988653
No 11
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=6.6e-13 Score=99.20 Aligned_cols=49 Identities=10% Similarity=0.232 Sum_probs=45.1
Q ss_pred CCCChhhHhhHHhCCCCHHHHHHHHHHhCC-CHHHHHHHHHhhhhhhhhh
Q 024447 141 LQVPDESLSLVMSMGFKEQDAKRALRICSQ-DVGSAIDFLVEEKAKRVKE 189 (267)
Q Consensus 141 l~vd~~~l~~L~~MGF~~~~Ar~ALr~~~g-dve~A~~wL~~~~~d~~~~ 189 (267)
..++++.|++|++|||++.+|++||++|+| |+++|++||++|+++++..
T Consensus 6 ~~~~e~~v~~L~~MGF~~~~a~~AL~~t~n~~ve~A~ewL~~~~~d~d~d 55 (74)
T 2dag_A 6 SGLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFA 55 (74)
T ss_dssp CSSCHHHHHHHHHHSCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTSTTSS
T ss_pred CCCCHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCcccc
Confidence 457999999999999999999999999997 8999999999999988643
No 12
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=4.8e-13 Score=96.79 Aligned_cols=47 Identities=23% Similarity=0.462 Sum_probs=44.1
Q ss_pred CCChhhHhhHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHhhhhhhhh
Q 024447 142 QVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKAKRVK 188 (267)
Q Consensus 142 ~vd~~~l~~L~~MGF~~~~Ar~ALr~~~gdve~A~~wL~~~~~d~~~ 188 (267)
.++++.|.+|++|||++.+|++||++|+||+++|++||++|+++++.
T Consensus 7 ~~~~~~v~~L~~MGF~~~~a~~AL~~t~~nve~A~e~L~~~~~d~d~ 53 (63)
T 2dak_A 7 GPPEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSHIDDLDA 53 (63)
T ss_dssp CCCHHHHHHHHHHTCCHHHHHHHHHHTTSCSHHHHHHHHHHHHSCCS
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCCccc
Confidence 46899999999999999999999999999999999999999988754
No 13
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=99.34 E-value=5.8e-13 Score=89.16 Aligned_cols=40 Identities=30% Similarity=0.556 Sum_probs=37.8
Q ss_pred CChhhHhhHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHhh
Q 024447 143 VPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEE 182 (267)
Q Consensus 143 vd~~~l~~L~~MGF~~~~Ar~ALr~~~gdve~A~~wL~~~ 182 (267)
+++++|++|++|||++.+|++||++|+||++.|++||++|
T Consensus 3 p~e~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~~~L~~~ 42 (43)
T 2g3q_A 3 PKSLAVEELSGMGFTEEEAHNALEKCNWDLEAATNFLLDS 42 (43)
T ss_dssp HHHHHHHHHHTTTSCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHhCcCHHHHHHHHHcC
Confidence 4678999999999999999999999999999999999986
No 14
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=1e-12 Score=100.31 Aligned_cols=49 Identities=27% Similarity=0.461 Sum_probs=45.2
Q ss_pred CCCChhhHhhHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHhhhhhhhhh
Q 024447 141 LQVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKAKRVKE 189 (267)
Q Consensus 141 l~vd~~~l~~L~~MGF~~~~Ar~ALr~~~gdve~A~~wL~~~~~d~~~~ 189 (267)
..++++.|++|++|||++.+|++||++|+||++.|++||++|+++++..
T Consensus 26 ~~~~e~~i~~L~~MGF~~~~a~~AL~~t~~nve~A~ewL~~~~~d~d~d 74 (83)
T 2dai_A 26 ERVDEAALRQLTEMGFPENRATKALQLNHMSVPQAMEWLIEHAEDPTID 74 (83)
T ss_dssp SSCCHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHHGGGCSTTC
T ss_pred CCCCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCCCCcccc
Confidence 3479999999999999999999999999999999999999999987643
No 15
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=99.29 E-value=1.3e-12 Score=106.16 Aligned_cols=81 Identities=22% Similarity=0.308 Sum_probs=60.5
Q ss_pred cCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHh-hHhhh---c--------cCCCChhhHhhHHhCCCCHHHHHHHH
Q 024447 98 AGRHPELALHLRMELLEGVAAYHSGQFDKARNALTS-AQAKF---F--------QLQVPDESLSLVMSMGFKEQDAKRAL 165 (267)
Q Consensus 98 g~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~-a~~~~---~--------~l~vd~~~l~~L~~MGF~~~~Ar~AL 165 (267)
|+.+.|.++ .|+..|+.+.+...+.... ..+.. . .+.++++.|.+|++|||++.+|++||
T Consensus 28 ~n~~~e~A~--------~wL~~~~~d~di~epl~~~~~~s~~~~~~~~l~~~~~~~~~~e~~v~~L~~MGF~~~~a~~AL 99 (126)
T 2lbc_A 28 GNMGAEVAF--------NWIIVHMEEPDFAEPLTMPGYGGAASAGASVFGASGLDNQPPEEIVAIITSMGFQRNQAIQAL 99 (126)
T ss_dssp TSCCHHHHH--------HHHHHGGGCSSSSCTTCCSSCCSSSSSCCCCSTTSSCCCCCCHHHHHHHHHHTSCHHHHHHHH
T ss_pred CCCCHHHHH--------HHHHHhcccccccccccccccccccccchhhhcccccccCcCHHHHHHHHHcCCCHHHHHHHH
Confidence 556677777 8888887665543322110 00000 1 34589999999999999999999999
Q ss_pred HHhCCCHHHHHHHHHhhhh-hh
Q 024447 166 RICSQDVGSAIDFLVEEKA-KR 186 (267)
Q Consensus 166 r~~~gdve~A~~wL~~~~~-d~ 186 (267)
++|+||+++|++||++|++ |+
T Consensus 100 ~~~~~~~e~A~e~L~~~~~~d~ 121 (126)
T 2lbc_A 100 RATNNNLERALDWIFSHPEFEE 121 (126)
T ss_dssp HHHTSCHHHHHHHHHTCCSSCC
T ss_pred HHcCCCHHHHHHHHHhCCCCcc
Confidence 9999999999999999998 54
No 16
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=1.9e-12 Score=88.39 Aligned_cols=42 Identities=29% Similarity=0.418 Sum_probs=39.2
Q ss_pred CCCChhhHhhHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHhhh
Q 024447 141 LQVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEK 183 (267)
Q Consensus 141 l~vd~~~l~~L~~MGF~~~~Ar~ALr~~~gdve~A~~wL~~~~ 183 (267)
..++++.|.+|++|||++.+|++||++|+ |+++|++||++|+
T Consensus 6 ~~~~~~~v~~L~~MGF~~~~a~~AL~~~~-n~e~A~~~L~~h~ 47 (47)
T 2ekk_A 6 SGVNQQQLQQLMDMGFTREHAMEALLNTS-TMEQATEYLLTHP 47 (47)
T ss_dssp CSSCHHHHHHHHHHHCCHHHHHHHHHHSC-SHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHHcCCCHHHHHHHHHHcC-CHHHHHHHHHcCC
Confidence 46799999999999999999999999995 9999999999985
No 17
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.27 E-value=3.9e-12 Score=92.22 Aligned_cols=45 Identities=20% Similarity=0.446 Sum_probs=41.8
Q ss_pred CCChhhHhhHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHhhhhhh
Q 024447 142 QVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKAKR 186 (267)
Q Consensus 142 ~vd~~~l~~L~~MGF~~~~Ar~ALr~~~gdve~A~~wL~~~~~d~ 186 (267)
.+++++|++|++|||++.+|++||++|+||+++|++||++|.++.
T Consensus 7 ~~~~~~I~~L~~MGF~~~~a~~AL~~~~~nve~A~e~L~~~~~~~ 51 (63)
T 1wji_A 7 GVDEKALKHITEMGFSKEASRQALMDNGNNLEAALNVLLTSNKQK 51 (63)
T ss_dssp SSCHHHHHHHHTTTCCHHHHHHHHHHTTSCHHHHHHHHHHHSSCC
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCCCCc
Confidence 368899999999999999999999999999999999999997654
No 18
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.27 E-value=1.8e-12 Score=93.08 Aligned_cols=40 Identities=18% Similarity=0.390 Sum_probs=36.8
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHH-hccCCCc
Q 024447 217 IEKIKELVSIGFEKELVAEALRRNENDSQKALD-DLTNPES 256 (267)
Q Consensus 217 ~e~v~~L~~MGF~~~~A~~ALr~t~ndve~Ald-lL~~pd~ 256 (267)
++.|.+|++|||++++|++|||+|+||+++|+| +|+|||-
T Consensus 20 ~e~V~~LvsMGFs~~qA~kALKat~~NvErAaDWLFSH~D~ 60 (63)
T 1wgn_A 20 RQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFAHSGP 60 (63)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCSCHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence 477999999999999999999999999999999 5678875
No 19
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.25 E-value=4.9e-12 Score=96.62 Aligned_cols=50 Identities=22% Similarity=0.307 Sum_probs=45.6
Q ss_pred cCCCChhhHhhHHhCCCCHHHHHHHHHHhC-CCHHHHHHHHHhhhhhhhhh
Q 024447 140 QLQVPDESLSLVMSMGFKEQDAKRALRICS-QDVGSAIDFLVEEKAKRVKE 189 (267)
Q Consensus 140 ~l~vd~~~l~~L~~MGF~~~~Ar~ALr~~~-gdve~A~~wL~~~~~d~~~~ 189 (267)
...++++.|++|++|||++.+|++||++++ +|++.|++||++|+++++..
T Consensus 25 ~~~~~e~~v~~L~~MGF~~~~a~~AL~~t~n~n~e~A~ewL~~h~~d~d~d 75 (84)
T 1vek_A 25 QPVANEEIVAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWLLSHMDDPDID 75 (84)
T ss_dssp CCCCCHHHHHHHHHHTCCHHHHHHHHHHTTTCCHHHHHHHHHHHTTCSTTT
T ss_pred CCCCCHHHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHhCCCccccc
Confidence 567899999999999999999999999996 69999999999999987643
No 20
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=99.25 E-value=6.1e-12 Score=101.77 Aligned_cols=89 Identities=20% Similarity=0.145 Sum_probs=61.7
Q ss_pred HhCCCHHHHH-HHH--cCCcchhhHHHHHHHHHHhhhhccC------CchhHhhhhHhhHhhhccCCCChhhHhhHHhCC
Q 024447 85 AHGKDSSRVR-LLQ--AGRHPELALHLRMELLEGVAAYHSG------QFDKARNALTSAQAKFFQLQVPDESLSLVMSMG 155 (267)
Q Consensus 85 ~yG~~~~rl~-~lk--g~~~~E~al~lRL~lLqg~v~~h~g------~~d~A~~~l~~a~~~~~~l~vd~~~l~~L~~MG 155 (267)
..|-+..|.. +|+ |+ ..|+++ .||.-|+. +.+...+.+...+....+-.++++.|++|++||
T Consensus 17 ~MGFp~~~~~kAl~~~g~-~~e~am--------ewL~~h~~L~d~~~d~~~~e~~l~~~~~~~~~~~~~~~~v~~L~eMG 87 (118)
T 4ae4_A 17 NMGYSYECVLRAMKAAGA-NIEQIL--------DYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKMMEFLQLMSKFKEMG 87 (118)
T ss_dssp HTTCCHHHHHHHHHHHCS-CHHHHH--------HHHHHHHHHHHTTCCHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHHHHCc-CHHHHH--------HHHHHhchhcccCCChhhhHHHHHhccCCccccccCHHHHHHHHHcC
Confidence 3566666654 444 77 899999 88888851 111222222211111111233678899999999
Q ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHhh
Q 024447 156 FKEQDAKRALRICSQDVGSAIDFLVEE 182 (267)
Q Consensus 156 F~~~~Ar~ALr~~~gdve~A~~wL~~~ 182 (267)
|++..|++||+.|+||+++|++||+..
T Consensus 88 F~~~~a~~AL~~~~nd~erAlewL~~~ 114 (118)
T 4ae4_A 88 FELKDIKEVLLLHNNDQDNALEDLMAR 114 (118)
T ss_dssp CCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 999999999999999999999999875
No 21
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.22 E-value=4.7e-12 Score=87.34 Aligned_cols=39 Identities=26% Similarity=0.457 Sum_probs=37.1
Q ss_pred ChhhHhhHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHhh
Q 024447 144 PDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEE 182 (267)
Q Consensus 144 d~~~l~~L~~MGF~~~~Ar~ALr~~~gdve~A~~wL~~~ 182 (267)
++++|++|++|||++.+|++||++|+||+++|++||+++
T Consensus 8 ~~~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~e~L~~g 46 (49)
T 1ify_A 8 YETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTG 46 (49)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHTTTSCSHHHHHHHHHC
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 567899999999999999999999999999999999986
No 22
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.22 E-value=9.1e-12 Score=94.93 Aligned_cols=47 Identities=28% Similarity=0.323 Sum_probs=43.2
Q ss_pred cCCCChhhHhhHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHhhhhhh
Q 024447 140 QLQVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKAKR 186 (267)
Q Consensus 140 ~l~vd~~~l~~L~~MGF~~~~Ar~ALr~~~gdve~A~~wL~~~~~d~ 186 (267)
...+++++|++|++|||++.+|++||++|+||+++|++||++|.++.
T Consensus 25 ~~~~~ee~I~~Lv~MGF~~~~A~~AL~~t~gdve~A~e~L~sh~~~i 71 (83)
T 1veg_A 25 QASPSQESINQLVYMGFDTVVAEAALRVFGGNVQLAAQTLAHHGGSL 71 (83)
T ss_dssp SCCCCHHHHHHHHHHSCCHHHHHHHHHHTTTCHHHHHHHHHHHTSSC
T ss_pred cCCCCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCCC
Confidence 34568999999999999999999999999999999999999998753
No 23
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=99.22 E-value=1.6e-12 Score=89.05 Aligned_cols=43 Identities=21% Similarity=0.385 Sum_probs=40.8
Q ss_pred ChhhHhhHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHhhhhhh
Q 024447 144 PDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKAKR 186 (267)
Q Consensus 144 d~~~l~~L~~MGF~~~~Ar~ALr~~~gdve~A~~wL~~~~~d~ 186 (267)
++++|++|++|||++..|++||.+|++|++.|++|||+|++|+
T Consensus 4 e~eaI~rL~~mGF~~~~a~~Al~a~~~n~e~A~~~Lf~~~~d~ 46 (47)
T 1dv0_A 4 EKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNFDD 46 (47)
T ss_dssp CHHHHTTTTTTTCCHHHHHHHHTTTTSCHHHHHHHTTSCCCCC
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCcCCC
Confidence 6789999999999999999999999999999999999999774
No 24
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.14 E-value=1.5e-11 Score=94.25 Aligned_cols=45 Identities=22% Similarity=0.353 Sum_probs=42.5
Q ss_pred CChhhHhhHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHhhhhhhh
Q 024447 143 VPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKAKRV 187 (267)
Q Consensus 143 vd~~~l~~L~~MGF~~~~Ar~ALr~~~gdve~A~~wL~~~~~d~~ 187 (267)
+|+++|.+|++|||++.+|++||+.+++|++.|++||++|+++++
T Consensus 20 ~n~~~I~qL~~MGF~~~~a~~AL~~~n~n~e~A~ewL~~h~~D~D 64 (85)
T 2dkl_A 20 IMSRLIKQLTDMGFPREPAEEALKSNNMNLDQAMSALLEKKVDVD 64 (85)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHTTSCCSS
T ss_pred cCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHHCcCCcc
Confidence 578999999999999999999999999999999999999998875
No 25
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.12 E-value=5.1e-11 Score=88.77 Aligned_cols=43 Identities=21% Similarity=0.465 Sum_probs=39.7
Q ss_pred CCChhhHhhHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHhhhh
Q 024447 142 QVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKA 184 (267)
Q Consensus 142 ~vd~~~l~~L~~MGF~~~~Ar~ALr~~~gdve~A~~wL~~~~~ 184 (267)
...+++|++|++|||++.+|++||+.|+||+++|++||+++.+
T Consensus 27 ~~~ee~I~~L~eMGF~r~~a~~AL~~~~~nve~Ave~Ll~~~~ 69 (73)
T 1vg5_A 27 AASEEQIQKLVAMGFDRTQVEVALAAADDDLTVAVEILMSQSG 69 (73)
T ss_dssp CCCHHHHHHHHTTTCCHHHHHHHHHHHTSCHHHHHHHHHTCSC
T ss_pred cccHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCCC
Confidence 3467999999999999999999999999999999999999864
No 26
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=99.12 E-value=5.6e-11 Score=83.18 Aligned_cols=38 Identities=29% Similarity=0.439 Sum_probs=36.2
Q ss_pred hhHhhHHhCCC-CHHHHHHHHHHhCCCHHHHHHHHHhhh
Q 024447 146 ESLSLVMSMGF-KEQDAKRALRICSQDVGSAIDFLVEEK 183 (267)
Q Consensus 146 ~~l~~L~~MGF-~~~~Ar~ALr~~~gdve~A~~wL~~~~ 183 (267)
++|.+|++||| ++..|++||++|+||+++|++||++|.
T Consensus 13 ~~l~~L~~MGF~~~~~~~~AL~~t~gnve~Ave~L~~~~ 51 (53)
T 2knz_A 13 QQLEQLNSMGFINREANLQALIATGGDINAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 57999999999 999999999999999999999999885
No 27
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=99.12 E-value=4.4e-11 Score=83.42 Aligned_cols=40 Identities=25% Similarity=0.379 Sum_probs=37.3
Q ss_pred ChhhHhhHHhCCC-CHHHHHHHHHHhCCCHHHHHHHHHhhh
Q 024447 144 PDESLSLVMSMGF-KEQDAKRALRICSQDVGSAIDFLVEEK 183 (267)
Q Consensus 144 d~~~l~~L~~MGF-~~~~Ar~ALr~~~gdve~A~~wL~~~~ 183 (267)
.+++|.+|++||| ++..+++||++|+||+++|++||++|+
T Consensus 12 ~~~~l~~L~~MGF~~~~~~~~AL~~t~gn~e~A~e~L~~~~ 52 (52)
T 2jy5_A 12 FQQQLEQLSAMGFLNREANLQALIATGGDINAAIERLLGSS 52 (52)
T ss_dssp THHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhCc
Confidence 4578999999999 999999999999999999999999874
No 28
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=99.12 E-value=5.5e-11 Score=77.75 Aligned_cols=36 Identities=31% Similarity=0.548 Sum_probs=34.2
Q ss_pred hhhHhhHHhCCCCHHHHHHHHHHhCCCHHHHHHHHH
Q 024447 145 DESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLV 180 (267)
Q Consensus 145 ~~~l~~L~~MGF~~~~Ar~ALr~~~gdve~A~~wL~ 180 (267)
++.|++|++|||++.+|++||+.|+||++.|++||+
T Consensus 5 ~~~i~~L~~mGf~~~~a~~AL~~~~~n~e~A~~~L~ 40 (40)
T 1z96_A 5 NSKIAQLVSMGFDPLEAAQALDAANGDLDVAASFLL 40 (40)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHC
Confidence 578999999999999999999999999999999984
No 29
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=1.1e-10 Score=79.57 Aligned_cols=41 Identities=29% Similarity=0.545 Sum_probs=36.8
Q ss_pred CcCCHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHh-ccCC
Q 024447 213 KAVDIEKIKELVSIGFEKELVAEALRRNENDSQKALDD-LTNP 254 (267)
Q Consensus 213 ~~vd~e~v~~L~~MGF~~~~A~~ALr~t~ndve~Aldl-L~~p 254 (267)
..++++.|.+|++|||+++.|++||+.| ||+++|++| |.||
T Consensus 6 ~~~~~~~v~~L~~MGF~~~~a~~AL~~~-~n~e~A~~~L~~h~ 47 (47)
T 2ekk_A 6 SGVNQQQLQQLMDMGFTREHAMEALLNT-STMEQATEYLLTHP 47 (47)
T ss_dssp CSSCHHHHHHHHHHHCCHHHHHHHHHHS-CSHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHHcCCCHHHHHHHHHHc-CCHHHHHHHHHcCC
Confidence 4589999999999999999999999999 599999995 5565
No 30
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=99.09 E-value=7e-11 Score=78.94 Aligned_cols=38 Identities=26% Similarity=0.296 Sum_probs=34.9
Q ss_pred CCHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHhcc
Q 024447 215 VDIEKIKELVSIGFEKELVAEALRRNENDSQKALDDLT 252 (267)
Q Consensus 215 vd~e~v~~L~~MGF~~~~A~~ALr~t~ndve~AldlL~ 252 (267)
|+++.|++|++|||+++.|++||+.++||+++|++||.
T Consensus 3 p~e~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~~~L~ 40 (43)
T 2g3q_A 3 PKSLAVEELSGMGFTEEEAHNALEKCNWDLEAATNFLL 40 (43)
T ss_dssp HHHHHHHHHHTTTSCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHhCcCHHHHHHHHH
Confidence 45688999999999999999999999999999999654
No 31
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.08 E-value=8e-11 Score=89.73 Aligned_cols=49 Identities=24% Similarity=0.257 Sum_probs=42.2
Q ss_pred CcCCHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHH-hccCCC-cchhhh
Q 024447 213 KAVDIEKIKELVSIGFEKELVAEALRRNENDSQKALD-DLTNPE-SNSAIQ 261 (267)
Q Consensus 213 ~~vd~e~v~~L~~MGF~~~~A~~ALr~t~ndve~Ald-lL~~pd-~~~~l~ 261 (267)
..|+++.|++|++|||++.+|+.||+.|+||+++|++ +|+|++ ..+.+|
T Consensus 26 ~~~~ee~I~~Lv~MGF~~~~A~~AL~~t~gdve~A~e~L~sh~~~ip~~~~ 76 (83)
T 1veg_A 26 ASPSQESINQLVYMGFDTVVAEAALRVFGGNVQLAAQTLAHHGGSLPPDLQ 76 (83)
T ss_dssp CCCCHHHHHHHHHHSCCHHHHHHHHHHTTTCHHHHHHHHHHHTSSCCTTSS
T ss_pred CCCCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCCCchhhh
Confidence 4578999999999999999999999999999999999 556776 444554
No 32
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.06 E-value=7.9e-11 Score=85.53 Aligned_cols=45 Identities=22% Similarity=0.277 Sum_probs=40.2
Q ss_pred cCCHHHHHHHHhCCCCHHHHHHHHHHcCC-CHHHHHH-hccCCCcch
Q 024447 214 AVDIEKIKELVSIGFEKELVAEALRRNEN-DSQKALD-DLTNPESNS 258 (267)
Q Consensus 214 ~vd~e~v~~L~~MGF~~~~A~~ALr~t~n-dve~Ald-lL~~pd~~~ 258 (267)
.++++.|.+|++|||++..|++||+.|+| |+++|++ +|.|+++.+
T Consensus 17 ~~~e~~i~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewL~~~~~d~d 63 (64)
T 2cpw_A 17 IKHGSALDVLLSMGFPRARAQKALASTGGRSVQTACDWLFSHSGPSS 63 (64)
T ss_dssp SSCCCHHHHHHHHTCCHHHHHHHHHHTTTSCHHHHHHHHHSCCSCCC
T ss_pred cCCHHHHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCC
Confidence 37888999999999999999999999999 9999999 567887643
No 33
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.04 E-value=2.1e-10 Score=83.06 Aligned_cols=43 Identities=35% Similarity=0.499 Sum_probs=38.4
Q ss_pred cCCHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHhc-cCCCc
Q 024447 214 AVDIEKIKELVSIGFEKELVAEALRRNENDSQKALDDL-TNPES 256 (267)
Q Consensus 214 ~vd~e~v~~L~~MGF~~~~A~~ALr~t~ndve~AldlL-~~pd~ 256 (267)
.++++.|++|++|||++++|+.||+.|+||+++|++|| .|++.
T Consensus 7 ~~~~~~I~~L~~MGF~~~~a~~AL~~~~~nve~A~e~L~~~~~~ 50 (63)
T 1wji_A 7 GVDEKALKHITEMGFSKEASRQALMDNGNNLEAALNVLLTSNKQ 50 (63)
T ss_dssp SSCHHHHHHHHTTTCCHHHHHHHHHHTTSCHHHHHHHHHHHSSC
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCCCC
Confidence 47999999999999999999999999999999999954 55543
No 34
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=8.8e-11 Score=84.83 Aligned_cols=42 Identities=24% Similarity=0.435 Sum_probs=38.1
Q ss_pred cCCHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHhc-cCCC
Q 024447 214 AVDIEKIKELVSIGFEKELVAEALRRNENDSQKALDDL-TNPE 255 (267)
Q Consensus 214 ~vd~e~v~~L~~MGF~~~~A~~ALr~t~ndve~AldlL-~~pd 255 (267)
.++++.|.+|++|||+++.|++||+.|+||+++|++|| .|++
T Consensus 7 ~~~~~~v~~L~~MGF~~~~a~~AL~~t~~nve~A~e~L~~~~~ 49 (63)
T 2dak_A 7 GPPEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSHID 49 (63)
T ss_dssp CCCHHHHHHHHHHTCCHHHHHHHHHHTTSCSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 47999999999999999999999999999999999954 5544
No 35
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.01 E-value=2.3e-10 Score=80.53 Aligned_cols=42 Identities=26% Similarity=0.323 Sum_probs=37.0
Q ss_pred ChhhHhhHHhCCCCHHH-HHHHHHHhCCCHHHHHHHHHhhhhh
Q 024447 144 PDESLSLVMSMGFKEQD-AKRALRICSQDVGSAIDFLVEEKAK 185 (267)
Q Consensus 144 d~~~l~~L~~MGF~~~~-Ar~ALr~~~gdve~A~~wL~~~~~d 185 (267)
.++.|++|++|||+..+ +++||+.|+|||++|++||+++++.
T Consensus 9 ~~~~l~~L~~MGF~d~~~n~~AL~~~~Gdv~~Ave~L~~~~~~ 51 (54)
T 2dah_A 9 FQVQLEQLRSMGFLNREANLQALIATGGDVDAAVEKLRQSSGP 51 (54)
T ss_dssp SHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 36789999999996655 6999999999999999999999753
No 36
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=99.01 E-value=3.4e-10 Score=77.08 Aligned_cols=38 Identities=29% Similarity=0.342 Sum_probs=34.3
Q ss_pred hhhHhhHHhCCCC-HHHHHHHHHHhCCCHHHHHHHHHhh
Q 024447 145 DESLSLVMSMGFK-EQDAKRALRICSQDVGSAIDFLVEE 182 (267)
Q Consensus 145 ~~~l~~L~~MGF~-~~~Ar~ALr~~~gdve~A~~wL~~~ 182 (267)
++.|++|++|||+ +..+++||++++||+++|++||+++
T Consensus 8 ~~~i~~L~~MGF~d~~~~~~AL~~~~gnv~~Ave~L~~~ 46 (46)
T 2bwb_A 8 EHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNG 46 (46)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence 5789999999996 6667999999999999999999874
No 37
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.00 E-value=6.2e-10 Score=82.93 Aligned_cols=43 Identities=30% Similarity=0.465 Sum_probs=37.9
Q ss_pred CcCCHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHhc-cCCC
Q 024447 213 KAVDIEKIKELVSIGFEKELVAEALRRNENDSQKALDDL-TNPE 255 (267)
Q Consensus 213 ~~vd~e~v~~L~~MGF~~~~A~~ALr~t~ndve~AldlL-~~pd 255 (267)
..+..+.|++|++|||++++|+.||+.++||+++|+++| .|++
T Consensus 26 ~~~~ee~I~~L~eMGF~r~~a~~AL~~~~~nve~Ave~Ll~~~~ 69 (73)
T 1vg5_A 26 VAASEEQIQKLVAMGFDRTQVEVALAAADDDLTVAVEILMSQSG 69 (73)
T ss_dssp SCCCHHHHHHHHTTTCCHHHHHHHHHHHTSCHHHHHHHHHTCSC
T ss_pred CcccHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCCC
Confidence 446789999999999999999999999999999999965 4543
No 38
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=98.99 E-value=8.6e-10 Score=76.85 Aligned_cols=39 Identities=23% Similarity=0.390 Sum_probs=35.4
Q ss_pred CHHHHHHHHhCCC-CHHHHHHHHHHcCCCHHHHHHh-ccCC
Q 024447 216 DIEKIKELVSIGF-EKELVAEALRRNENDSQKALDD-LTNP 254 (267)
Q Consensus 216 d~e~v~~L~~MGF-~~~~A~~ALr~t~ndve~Aldl-L~~p 254 (267)
..+.|.+|++||| +++.+++||+.|+||+++|+++ |+||
T Consensus 12 ~~~~l~~L~~MGF~~~~~~~~AL~~t~gn~e~A~e~L~~~~ 52 (52)
T 2jy5_A 12 FQQQLEQLSAMGFLNREANLQALIATGGDINAAIERLLGSS 52 (52)
T ss_dssp THHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhCc
Confidence 4678999999999 9999999999999999999995 5565
No 39
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.99 E-value=2.3e-10 Score=83.00 Aligned_cols=44 Identities=16% Similarity=0.376 Sum_probs=38.7
Q ss_pred cCCHHHHHHHHhCCCCHHHHHHHHHHc-CCCHHHHHHh-ccCCCcc
Q 024447 214 AVDIEKIKELVSIGFEKELVAEALRRN-ENDSQKALDD-LTNPESN 257 (267)
Q Consensus 214 ~vd~e~v~~L~~MGF~~~~A~~ALr~t-~ndve~Aldl-L~~pd~~ 257 (267)
.++++.|.+|++|||++..|++||+.| +||+++|++| |.|+++.
T Consensus 7 ~~~~~~v~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewLl~~~~d~ 52 (64)
T 1whc_A 7 GAELTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDP 52 (64)
T ss_dssp CCCCCHHHHHHTTTCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTCS
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHhcCCCHHHHHHHHHhCCCCc
Confidence 478889999999999999999999999 6999999995 5566653
No 40
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.98 E-value=2.5e-10 Score=78.60 Aligned_cols=37 Identities=32% Similarity=0.517 Sum_probs=34.2
Q ss_pred CHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHhcc
Q 024447 216 DIEKIKELVSIGFEKELVAEALRRNENDSQKALDDLT 252 (267)
Q Consensus 216 d~e~v~~L~~MGF~~~~A~~ALr~t~ndve~AldlL~ 252 (267)
+.+.|++|++|||++++|+.||+.|+||+++|+++|.
T Consensus 8 ~~~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~e~L~ 44 (49)
T 1ify_A 8 YETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLL 44 (49)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHTTTSCSHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 5678999999999999999999999999999999654
No 41
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.96 E-value=5.8e-10 Score=83.17 Aligned_cols=45 Identities=20% Similarity=0.332 Sum_probs=39.2
Q ss_pred CcCCHHHHHHHHhCCCCHHHHHHHHHHcCC-CHHHHHHh-ccCCCcc
Q 024447 213 KAVDIEKIKELVSIGFEKELVAEALRRNEN-DSQKALDD-LTNPESN 257 (267)
Q Consensus 213 ~~vd~e~v~~L~~MGF~~~~A~~ALr~t~n-dve~Aldl-L~~pd~~ 257 (267)
..++++.|.+|++|||++..|++||+.|+| |+++|++| |.|+++.
T Consensus 6 ~~~~e~~v~~L~~MGF~~~~a~~AL~~t~n~~ve~A~ewL~~~~~d~ 52 (74)
T 2dag_A 6 SGLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDP 52 (74)
T ss_dssp CSSCHHHHHHHHHHSCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTST
T ss_pred CCCCHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCc
Confidence 347999999999999999999999999997 89999995 5566543
No 42
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=98.95 E-value=6.7e-10 Score=79.23 Aligned_cols=39 Identities=28% Similarity=0.337 Sum_probs=35.4
Q ss_pred hhhHhhHHhCCCC-HHHHHHHHHHhCCCHHHHHHHHHhhh
Q 024447 145 DESLSLVMSMGFK-EQDAKRALRICSQDVGSAIDFLVEEK 183 (267)
Q Consensus 145 ~~~l~~L~~MGF~-~~~Ar~ALr~~~gdve~A~~wL~~~~ 183 (267)
++.|++|++|||+ +..+++||++++||+++|++||++++
T Consensus 18 ~~qi~~L~~MGF~d~~~~~~AL~~~~gnve~Ave~L~~~~ 57 (58)
T 1wr1_B 18 EHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNGD 57 (58)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 4689999999995 66779999999999999999999875
No 43
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.93 E-value=5.6e-10 Score=81.80 Aligned_cols=41 Identities=24% Similarity=0.284 Sum_probs=36.6
Q ss_pred hhhHhhHHhCCCCHHHH-HHHHHHhCCCHHHHHHHHHhhhhh
Q 024447 145 DESLSLVMSMGFKEQDA-KRALRICSQDVGSAIDFLVEEKAK 185 (267)
Q Consensus 145 ~~~l~~L~~MGF~~~~A-r~ALr~~~gdve~A~~wL~~~~~d 185 (267)
++.|.+|.+|||+..++ ++||++|+|||++|++||+++.++
T Consensus 20 ~~ql~qL~~MGF~d~~an~~AL~at~Gnve~Ave~L~~~~~~ 61 (67)
T 2dna_A 20 SKEMECLQAMGFVNYNANLQALIATDGDTNAAIYKLKSSQGF 61 (67)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHHCCSS
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 35899999999976666 999999999999999999999765
No 44
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.92 E-value=4.9e-10 Score=81.40 Aligned_cols=44 Identities=16% Similarity=0.205 Sum_probs=38.1
Q ss_pred CcCCHHHHHHHHhCCCCHHHHHHHHHHcCC-CHHHHHHh-ccCCCc
Q 024447 213 KAVDIEKIKELVSIGFEKELVAEALRRNEN-DSQKALDD-LTNPES 256 (267)
Q Consensus 213 ~~vd~e~v~~L~~MGF~~~~A~~ALr~t~n-dve~Aldl-L~~pd~ 256 (267)
..++++.|++|++|||++..|++||+.|+| |++.|++| |.|.++
T Consensus 6 ~~~~e~~v~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~h~~d 51 (64)
T 2crn_A 6 SGSSPSLLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHDHCND 51 (64)
T ss_dssp CCCSCSSHHHHHHTSCCHHHHHHHHHHHTSCCHHHHHHHHHHHSSS
T ss_pred CCCCHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCC
Confidence 346788999999999999999999999998 99999995 456543
No 45
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=98.91 E-value=1.5e-09 Score=70.87 Aligned_cols=35 Identities=37% Similarity=0.399 Sum_probs=33.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHhc
Q 024447 217 IEKIKELVSIGFEKELVAEALRRNENDSQKALDDL 251 (267)
Q Consensus 217 ~e~v~~L~~MGF~~~~A~~ALr~t~ndve~AldlL 251 (267)
.+.|.+|++|||+++.|+.||+.|+||+++|+++|
T Consensus 5 ~~~i~~L~~mGf~~~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 5 NSKIAQLVSMGFDPLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 46799999999999999999999999999999976
No 46
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=98.91 E-value=1.4e-09 Score=76.08 Aligned_cols=37 Identities=27% Similarity=0.462 Sum_probs=33.7
Q ss_pred HHHHHHHhCCC-CHHHHHHHHHHcCCCHHHHHHh-ccCC
Q 024447 218 EKIKELVSIGF-EKELVAEALRRNENDSQKALDD-LTNP 254 (267)
Q Consensus 218 e~v~~L~~MGF-~~~~A~~ALr~t~ndve~Aldl-L~~p 254 (267)
+.|.+|++||| +++.|+.||+.|+||+++|+++ |.|+
T Consensus 13 ~~l~~L~~MGF~~~~~~~~AL~~t~gnve~Ave~L~~~~ 51 (53)
T 2knz_A 13 QQLEQLNSMGFINREANLQALIATGGDINAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 56999999999 9999999999999999999995 5565
No 47
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.91 E-value=6.5e-10 Score=85.05 Aligned_cols=47 Identities=26% Similarity=0.362 Sum_probs=41.8
Q ss_pred CCcCCHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHh-ccCCCcch
Q 024447 212 KKAVDIEKIKELVSIGFEKELVAEALRRNENDSQKALDD-LTNPESNS 258 (267)
Q Consensus 212 ~~~vd~e~v~~L~~MGF~~~~A~~ALr~t~ndve~Aldl-L~~pd~~~ 258 (267)
..|++++.|++|++|||++..|++||+.++||+++|++| |.|+++.+
T Consensus 17 ~~~~n~~~I~qL~~MGF~~~~a~~AL~~~n~n~e~A~ewL~~h~~D~D 64 (85)
T 2dkl_A 17 EAWIMSRLIKQLTDMGFPREPAEEALKSNNMNLDQAMSALLEKKVDVD 64 (85)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHTTSCCSS
T ss_pred ccccCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHHCcCCcc
Confidence 357889999999999999999999999999999999995 56877655
No 48
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=9.8e-10 Score=83.70 Aligned_cols=43 Identities=23% Similarity=0.410 Sum_probs=38.7
Q ss_pred cCCHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHh-ccCCCc
Q 024447 214 AVDIEKIKELVSIGFEKELVAEALRRNENDSQKALDD-LTNPES 256 (267)
Q Consensus 214 ~vd~e~v~~L~~MGF~~~~A~~ALr~t~ndve~Aldl-L~~pd~ 256 (267)
.++++.|.+|++|||++..|++||+.|+||+++|++| |.|+++
T Consensus 27 ~~~e~~i~~L~~MGF~~~~a~~AL~~t~~nve~A~ewL~~~~~d 70 (83)
T 2dai_A 27 RVDEAALRQLTEMGFPENRATKALQLNHMSVPQAMEWLIEHAED 70 (83)
T ss_dssp SCCHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHHGGGC
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCCCC
Confidence 4799999999999999999999999999999999995 456554
No 49
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.88 E-value=1.2e-09 Score=81.51 Aligned_cols=42 Identities=21% Similarity=0.364 Sum_probs=37.5
Q ss_pred ChhhHhhHHhCCC-CHHHHHHHHHHhCCCHHHHHHHHHhhhhh
Q 024447 144 PDESLSLVMSMGF-KEQDAKRALRICSQDVGSAIDFLVEEKAK 185 (267)
Q Consensus 144 d~~~l~~L~~MGF-~~~~Ar~ALr~~~gdve~A~~wL~~~~~d 185 (267)
-++.|++|++||| ++..+++||++++||+++|++||+++++.
T Consensus 29 ye~qi~qL~eMGF~dr~~~~~AL~~t~Gnve~Ave~L~~~~~~ 71 (74)
T 1vej_A 29 YQQELEELKALGFANRDANLQALVATDGDIHAAIEMLLGASGP 71 (74)
T ss_dssp SHHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHhCCCC
Confidence 4578999999999 57888999999999999999999998643
No 50
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=98.85 E-value=1.1e-09 Score=74.76 Aligned_cols=42 Identities=26% Similarity=0.351 Sum_probs=37.8
Q ss_pred CHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHH-hccCCCcc
Q 024447 216 DIEKIKELVSIGFEKELVAEALRRNENDSQKALD-DLTNPESN 257 (267)
Q Consensus 216 d~e~v~~L~~MGF~~~~A~~ALr~t~ndve~Ald-lL~~pd~~ 257 (267)
+.++|++|++|||++.+|++||..|++|++.|++ +|+|+++.
T Consensus 4 e~eaI~rL~~mGF~~~~a~~Al~a~~~n~e~A~~~Lf~~~~d~ 46 (47)
T 1dv0_A 4 EKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNFDD 46 (47)
T ss_dssp CHHHHTTTTTTTCCHHHHHHHHTTTTSCHHHHHHHTTSCCCCC
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCcCCC
Confidence 5678999999999999999999999999999999 56688753
No 51
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=98.84 E-value=2.6e-09 Score=74.12 Aligned_cols=35 Identities=31% Similarity=0.304 Sum_probs=33.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHhc
Q 024447 217 IEKIKELVSIGFEKELVAEALRRNENDSQKALDDL 251 (267)
Q Consensus 217 ~e~v~~L~~MGF~~~~A~~ALr~t~ndve~AldlL 251 (267)
.+.|.+||+|||+++.|++||+.++||++.|+.+|
T Consensus 12 ~~~Ia~Lm~mGFsr~~ai~AL~~a~nnve~AaniL 46 (52)
T 2ooa_A 12 DAKIAKLMGEGYAFEEVKRALEIAQNNVEVARSIL 46 (52)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 38899999999999999999999999999999965
No 52
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=98.83 E-value=3.3e-09 Score=80.90 Aligned_cols=46 Identities=20% Similarity=0.295 Sum_probs=39.6
Q ss_pred CCcCCHHHHHHHHhCCCCHHHHHHHHHHcC-CCHHHHHHh-ccCCCcc
Q 024447 212 KKAVDIEKIKELVSIGFEKELVAEALRRNE-NDSQKALDD-LTNPESN 257 (267)
Q Consensus 212 ~~~vd~e~v~~L~~MGF~~~~A~~ALr~t~-ndve~Aldl-L~~pd~~ 257 (267)
...++++.|.+|++|||++..|++||+.|+ +|+++|++| |.|+++.
T Consensus 25 ~~~~~e~~v~~L~~MGF~~~~a~~AL~~t~n~n~e~A~ewL~~h~~d~ 72 (84)
T 1vek_A 25 QPVANEEIVAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWLLSHMDDP 72 (84)
T ss_dssp CCCCCHHHHHHHHHHTCCHHHHHHHHHHTTTCCHHHHHHHHHHHTTCS
T ss_pred CCCCCHHHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHhCCCcc
Confidence 345799999999999999999999999997 599999995 5566543
No 53
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.82 E-value=3.7e-09 Score=74.29 Aligned_cols=42 Identities=19% Similarity=0.199 Sum_probs=35.6
Q ss_pred CHHHHHHHHhCCCCHH-HHHHHHHHcCCCHHHHHH-hccCCCcc
Q 024447 216 DIEKIKELVSIGFEKE-LVAEALRRNENDSQKALD-DLTNPESN 257 (267)
Q Consensus 216 d~e~v~~L~~MGF~~~-~A~~ALr~t~ndve~Ald-lL~~pd~~ 257 (267)
..+.|.+|++|||+.+ .+++||+.|+|||++|++ +|.+|+..
T Consensus 9 ~~~~l~~L~~MGF~d~~~n~~AL~~~~Gdv~~Ave~L~~~~~~~ 52 (54)
T 2dah_A 9 FQVQLEQLRSMGFLNREANLQALIATGGDVDAAVEKLRQSSGPS 52 (54)
T ss_dssp SHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhCCCcC
Confidence 3678999999999665 569999999999999999 55677753
No 54
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=98.77 E-value=8.3e-09 Score=70.19 Aligned_cols=36 Identities=33% Similarity=0.443 Sum_probs=31.7
Q ss_pred HHHHHHHHhCCCC-HHHHHHHHHHcCCCHHHHHHhcc
Q 024447 217 IEKIKELVSIGFE-KELVAEALRRNENDSQKALDDLT 252 (267)
Q Consensus 217 ~e~v~~L~~MGF~-~~~A~~ALr~t~ndve~AldlL~ 252 (267)
.+.|.+|++|||+ +..++.||+.++||+++|+++|.
T Consensus 8 ~~~i~~L~~MGF~d~~~~~~AL~~~~gnv~~Ave~L~ 44 (46)
T 2bwb_A 8 EHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLL 44 (46)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3679999999995 66789999999999999999654
No 55
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=98.77 E-value=9.5e-09 Score=71.30 Aligned_cols=37 Identities=32% Similarity=0.487 Sum_probs=35.0
Q ss_pred hhhHhhHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHh
Q 024447 145 DESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVE 181 (267)
Q Consensus 145 ~~~l~~L~~MGF~~~~Ar~ALr~~~gdve~A~~wL~~ 181 (267)
++.|.+||+|||++++|.+||+.++||++.|.+.|.+
T Consensus 12 ~~~Ia~Lm~mGFsr~~ai~AL~~a~nnve~AaniLle 48 (52)
T 2ooa_A 12 DAKIAKLMGEGYAFEEVKRALEIAQNNVEVARSILRE 48 (52)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3899999999999999999999999999999999865
No 56
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=98.76 E-value=6.2e-09 Score=74.20 Aligned_cols=38 Identities=32% Similarity=0.433 Sum_probs=33.1
Q ss_pred HHHHHHHHhCCCC-HHHHHHHHHHcCCCHHHHHHh-ccCC
Q 024447 217 IEKIKELVSIGFE-KELVAEALRRNENDSQKALDD-LTNP 254 (267)
Q Consensus 217 ~e~v~~L~~MGF~-~~~A~~ALr~t~ndve~Aldl-L~~p 254 (267)
.+.|++|++|||+ ++.+++||+.++||+++|+++ |++|
T Consensus 18 ~~qi~~L~~MGF~d~~~~~~AL~~~~gnve~Ave~L~~~~ 57 (58)
T 1wr1_B 18 EHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNGD 57 (58)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 3579999999995 778899999999999999994 5565
No 57
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.73 E-value=1.5e-08 Score=70.59 Aligned_cols=37 Identities=24% Similarity=0.241 Sum_probs=34.0
Q ss_pred CCHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHhc
Q 024447 215 VDIEKIKELVSIGFEKELVAEALRRNENDSQKALDDL 251 (267)
Q Consensus 215 vd~e~v~~L~~MGF~~~~A~~ALr~t~ndve~AldlL 251 (267)
+....|.+||+|||+++.|++||..++||++.|+.+|
T Consensus 8 ~~e~~I~~L~~lGF~r~~ai~AL~~a~nnve~Aa~iL 44 (53)
T 2d9s_A 8 QLSSEIERLMSQGYSYQDIQKALVIAHNNIEMAKNIL 44 (53)
T ss_dssp CSHHHHHHHHHHTCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHhcCCHHHHHHHH
Confidence 3457799999999999999999999999999999965
No 58
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.72 E-value=1.2e-08 Score=76.12 Aligned_cols=41 Identities=22% Similarity=0.380 Sum_probs=35.5
Q ss_pred CHHHHHHHHhCCC-CHHHHHHHHHHcCCCHHHHHH-hccCCCc
Q 024447 216 DIEKIKELVSIGF-EKELVAEALRRNENDSQKALD-DLTNPES 256 (267)
Q Consensus 216 d~e~v~~L~~MGF-~~~~A~~ALr~t~ndve~Ald-lL~~pd~ 256 (267)
-.+.|.+|++||| +++.+++||+.++||+++|++ +|.+|+.
T Consensus 29 ye~qi~qL~eMGF~dr~~~~~AL~~t~Gnve~Ave~L~~~~~~ 71 (74)
T 1vej_A 29 YQQELEELKALGFANRDANLQALVATDGDIHAAIEMLLGASGP 71 (74)
T ss_dssp SHHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHhCCCC
Confidence 4578999999999 578889999999999999999 5567654
No 59
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.69 E-value=1.1e-08 Score=74.97 Aligned_cols=40 Identities=18% Similarity=0.195 Sum_probs=33.9
Q ss_pred HHHHHHHHhCCCCHHHH-HHHHHHcCCCHHHHHH-hccCCCc
Q 024447 217 IEKIKELVSIGFEKELV-AEALRRNENDSQKALD-DLTNPES 256 (267)
Q Consensus 217 ~e~v~~L~~MGF~~~~A-~~ALr~t~ndve~Ald-lL~~pd~ 256 (267)
...|.+|++|||..+++ ++||+.|+|||++|++ +|+|++.
T Consensus 20 ~~ql~qL~~MGF~d~~an~~AL~at~Gnve~Ave~L~~~~~~ 61 (67)
T 2dna_A 20 SKEMECLQAMGFVNYNANLQALIATDGDTNAAIYKLKSSQGF 61 (67)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHHCCSS
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 35799999999976655 9999999999999999 5567765
No 60
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.64 E-value=3.8e-08 Score=68.60 Aligned_cols=40 Identities=28% Similarity=0.358 Sum_probs=36.4
Q ss_pred CChhhHhhHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHhh
Q 024447 143 VPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEE 182 (267)
Q Consensus 143 vd~~~l~~L~~MGF~~~~Ar~ALr~~~gdve~A~~wL~~~ 182 (267)
..+..|.+||+|||++++|.+||..++||++.|.+.|.+.
T Consensus 8 ~~e~~I~~L~~lGF~r~~ai~AL~~a~nnve~Aa~iL~ef 47 (53)
T 2d9s_A 8 QLSSEIERLMSQGYSYQDIQKALVIAHNNIEMAKNILREF 47 (53)
T ss_dssp CSHHHHHHHHHHTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 3557799999999999999999999999999999998764
No 61
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=98.64 E-value=1.5e-08 Score=70.85 Aligned_cols=36 Identities=25% Similarity=0.278 Sum_probs=33.6
Q ss_pred CHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHhc
Q 024447 216 DIEKIKELVSIGFEKELVAEALRRNENDSQKALDDL 251 (267)
Q Consensus 216 d~e~v~~L~~MGF~~~~A~~ALr~t~ndve~AldlL 251 (267)
.++.|.+||+|||+++.|++||..++|||+.|.++|
T Consensus 7 ~e~~Ia~L~smGfsr~da~~AL~ia~Ndv~~AtNiL 42 (56)
T 2juj_A 7 LSSEIENLMSQGYSYQDIQKALVIAQNNIEMAKNIL 42 (56)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHTTTCSHHHHHHH
T ss_pred ChHHHHHHHHcCCCHHHHHHHHHHhcccHHHHHHHH
Confidence 457899999999999999999999999999999965
No 62
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=98.60 E-value=4.3e-08 Score=68.57 Aligned_cols=39 Identities=28% Similarity=0.376 Sum_probs=35.9
Q ss_pred ChhhHhhHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHhh
Q 024447 144 PDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEE 182 (267)
Q Consensus 144 d~~~l~~L~~MGF~~~~Ar~ALr~~~gdve~A~~wL~~~ 182 (267)
.++.|.+||+|||+++.+++||..++|||+.|.+.|.+-
T Consensus 7 ~e~~Ia~L~smGfsr~da~~AL~ia~Ndv~~AtNiLlEf 45 (56)
T 2juj_A 7 LSSEIENLMSQGYSYQDIQKALVIAQNNIEMAKNILREF 45 (56)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHTTTCSHHHHHHHHHS
T ss_pred ChHHHHHHHHcCCCHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 357899999999999999999999999999999998664
No 63
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=98.56 E-value=7.5e-08 Score=64.98 Aligned_cols=34 Identities=26% Similarity=0.350 Sum_probs=32.3
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHhc
Q 024447 218 EKIKELVSIGFEKELVAEALRRNENDSQKALDDL 251 (267)
Q Consensus 218 e~v~~L~~MGF~~~~A~~ALr~t~ndve~AldlL 251 (267)
..|.+|++|||+++.|++||-.++|||+.|.++|
T Consensus 6 ~~I~~L~s~Gf~~~~~~rAL~ia~Nnie~A~nIL 39 (46)
T 2oo9_A 6 SEIENLMSQGYSYQDIQKALVIAQNNIEMAKNIL 39 (46)
T ss_dssp HHHHHHHHTTBCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhhccHHHHHHHH
Confidence 5699999999999999999999999999999965
No 64
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=98.54 E-value=7.5e-08 Score=76.65 Aligned_cols=40 Identities=20% Similarity=0.344 Sum_probs=36.6
Q ss_pred ChhhHhhHHhCCCC-HHHHHHHHHHhCCCHHHHHHHHHhhh
Q 024447 144 PDESLSLVMSMGFK-EQDAKRALRICSQDVGSAIDFLVEEK 183 (267)
Q Consensus 144 d~~~l~~L~~MGF~-~~~Ar~ALr~~~gdve~A~~wL~~~~ 183 (267)
.++.|++|.+|||+ +..+++||+.++||+++|++||++++
T Consensus 66 ~~~qL~qL~eMGF~d~~~ni~AL~~t~Gdve~AVe~L~~~~ 106 (108)
T 2cwb_A 66 WQPQLQQLRDMGIQDDELSLRALQATGGDIQAALELIFAGG 106 (108)
T ss_dssp THHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHTS
T ss_pred hHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhcC
Confidence 46899999999995 58999999999999999999999875
No 65
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.51 E-value=9.9e-08 Score=66.61 Aligned_cols=40 Identities=20% Similarity=0.388 Sum_probs=36.7
Q ss_pred CCChhhHhhHHhCCCCHHHHHHHHHHhCC-CHHHHHHHHHh
Q 024447 142 QVPDESLSLVMSMGFKEQDAKRALRICSQ-DVGSAIDFLVE 181 (267)
Q Consensus 142 ~vd~~~l~~L~~MGF~~~~Ar~ALr~~~g-dve~A~~wL~~ 181 (267)
.++...+++|++|||+++.|.+||+.||| .++.|++||..
T Consensus 7 ~vn~qmlq~L~eMGFd~erae~Alk~Tg~~Gle~AmewL~k 47 (54)
T 2cos_A 7 GVNRQMLQELVNAGCDQEMAGRALKQTGSRSIEAALEYISK 47 (54)
T ss_dssp SCCHHHHHHHHHHHCCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCCHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 56888999999999999999999999998 69999999943
No 66
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.47 E-value=1.6e-07 Score=65.50 Aligned_cols=40 Identities=25% Similarity=0.490 Sum_probs=37.4
Q ss_pred CcCCHHHHHHHHhCCCCHHHHHHHHHHcCC-CHHHHHHhcc
Q 024447 213 KAVDIEKIKELVSIGFEKELVAEALRRNEN-DSQKALDDLT 252 (267)
Q Consensus 213 ~~vd~e~v~~L~~MGF~~~~A~~ALr~t~n-dve~AldlL~ 252 (267)
..|+.+.+++|++|||+++.|..||++|+| .++.|++||.
T Consensus 6 ~~vn~qmlq~L~eMGFd~erae~Alk~Tg~~Gle~AmewL~ 46 (54)
T 2cos_A 6 SGVNRQMLQELVNAGCDQEMAGRALKQTGSRSIEAALEYIS 46 (54)
T ss_dssp CSCCHHHHHHHHHHHCCHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred chhHHHHHHHHHHcCCCHHHHHHHHHHhCcccHHHHHHHHH
Confidence 468999999999999999999999999999 8999999875
No 67
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=98.45 E-value=2.5e-07 Score=62.48 Aligned_cols=38 Identities=29% Similarity=0.406 Sum_probs=34.9
Q ss_pred hhhHhhHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHhh
Q 024447 145 DESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEE 182 (267)
Q Consensus 145 ~~~l~~L~~MGF~~~~Ar~ALr~~~gdve~A~~wL~~~ 182 (267)
++.|.+||+|||+.+.+++||-.++|||+.|.+.|.+.
T Consensus 5 e~~I~~L~s~Gf~~~~~~rAL~ia~Nnie~A~nIL~ef 42 (46)
T 2oo9_A 5 SSEIENLMSQGYSYQDIQKALVIAQNNIEMAKNILREF 42 (46)
T ss_dssp HHHHHHHHHTTBCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhccHHHHHHHHHHh
Confidence 46799999999999999999999999999999988653
No 68
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=98.38 E-value=5e-07 Score=93.58 Aligned_cols=82 Identities=20% Similarity=0.274 Sum_probs=65.5
Q ss_pred cCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhh-----HhhhccCCCChhhHhhHHhCCCCHHHHHHHHHHhCCCH
Q 024447 98 AGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSA-----QAKFFQLQVPDESLSLVMSMGFKEQDAKRALRICSQDV 172 (267)
Q Consensus 98 g~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a-----~~~~~~l~vd~~~l~~L~~MGF~~~~Ar~ALr~~~gdv 172 (267)
|+.+.|.++ .|+.-|+.+.|...+..... ......-.++++.|++|.+|||+..+|++||+.++||+
T Consensus 677 ~n~~~e~a~--------~wl~~hmdd~di~~p~~~~~~~~~~s~~~~~~~~~~e~i~~l~~mGf~~~~a~~aL~~t~~~~ 748 (854)
T 3ihp_A 677 GNSGAEAAM--------NWVMSHMDDPDFANPLILPGSSGPGSTSAAADPPPEDCVTTIVSMGFSRDQALKALRATNNSL 748 (854)
T ss_dssp TSCCHHHHH--------HHHHHHTTSCGGGSCCCCC--------------CCHHHHHHHHTTTCCHHHHHHHHHHTTTCH
T ss_pred CCCchHHHh--------HHHhhccCcccccccccccccccccccccccCCCCHHHHHHHHHcCCCHHHHHHHHHhhcCcH
Confidence 889999999 99999998887766643211 00011135799999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhh
Q 024447 173 GSAIDFLVEEKAKRV 187 (267)
Q Consensus 173 e~A~~wL~~~~~d~~ 187 (267)
++|++||++|+++..
T Consensus 749 eraidwlfs~~d~~~ 763 (854)
T 3ihp_A 749 ERAVDWIFSHIDDLD 763 (854)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHhhhcCccccc
Confidence 999999999998864
No 69
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=98.37 E-value=3.4e-07 Score=72.88 Aligned_cols=40 Identities=25% Similarity=0.341 Sum_probs=34.7
Q ss_pred CHHHHHHHHhCCC-CHHHHHHHHHHcCCCHHHHHH-hccCCC
Q 024447 216 DIEKIKELVSIGF-EKELVAEALRRNENDSQKALD-DLTNPE 255 (267)
Q Consensus 216 d~e~v~~L~~MGF-~~~~A~~ALr~t~ndve~Ald-lL~~pd 255 (267)
..+.|.+|.+||| +++.++.||+.++||+++|++ ||++|.
T Consensus 66 ~~~qL~qL~eMGF~d~~~ni~AL~~t~Gdve~AVe~L~~~~~ 107 (108)
T 2cwb_A 66 WQPQLQQLRDMGIQDDELSLRALQATGGDIQAALELIFAGGA 107 (108)
T ss_dssp THHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhcCC
Confidence 4688999999999 567999999999999999999 555653
No 70
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=98.24 E-value=1.4e-06 Score=73.30 Aligned_cols=67 Identities=30% Similarity=0.377 Sum_probs=57.5
Q ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHhhcCCCCCCCcCCHHHHHHHHhCC-CCHHHHH
Q 024447 156 FKEQDAKRALRICSQDVGSAIDFLVEEKAKRVKEREDNEQRRKEIMEQKRYGLTPLKKAVDIEKIKELVSIG-FEKELVA 234 (267)
Q Consensus 156 F~~~~Ar~ALr~~~gdve~A~~wL~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~vd~e~v~~L~~MG-F~~~~A~ 234 (267)
+|..+||.||+..+||+++|+.-+...+ + .++..|++.| |+++++.
T Consensus 75 ~s~~EAr~Aw~~~~Gd~~~Av~~ci~~R-------------~--------------------~K~~eL~s~G~~~~~~~~ 121 (162)
T 4dbg_B 75 FSCQEARRAWLDRHGNLDEAVEECVRTR-------------R--------------------RKVQELQSLGFGPEEGSL 121 (162)
T ss_dssp CCHHHHHHHHHHTTTCHHHHHHHHHHHH-------------H--------------------HHHHHHHHTTCCGGGTHH
T ss_pred ccHHHHHHHHHHccCChHHHHHHHHHHH-------------H--------------------HHHHHHHhcCCchHHHHH
Confidence 8899999999999999999999775432 1 3488999999 6677999
Q ss_pred HHHHHcCCCHHHHHHhccCCC
Q 024447 235 EALRRNENDSQKALDDLTNPE 255 (267)
Q Consensus 235 ~ALr~t~ndve~AldlL~~pd 255 (267)
+||+.++|||+.|+-.|+.|.
T Consensus 122 ~aL~~~~Gdv~~Al~eLqr~l 142 (162)
T 4dbg_B 122 QALFQHGGDVSRALTELQRQR 142 (162)
T ss_dssp HHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCcHHHHHHHHHHHH
Confidence 999999999999998887653
No 71
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=98.18 E-value=3.1e-07 Score=86.97 Aligned_cols=42 Identities=21% Similarity=0.396 Sum_probs=40.4
Q ss_pred ChhhHhhHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHhhhhh
Q 024447 144 PDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKAK 185 (267)
Q Consensus 144 d~~~l~~L~~MGF~~~~Ar~ALr~~~gdve~A~~wL~~~~~d 185 (267)
++++|.+|++|||++..|++||++|++|++.|++|||+|++|
T Consensus 325 e~eaI~rL~~mGF~~~~a~~al~a~~~n~e~A~~~L~~~~~d 366 (368)
T 1oqy_A 325 EKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNFD 366 (368)
T ss_dssp THHHHHHHHHHTCCSHHHHHHTSSSSSCSSHHHHHHHHHHCC
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHhhCcCc
Confidence 779999999999999999999999999999999999999876
No 72
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.15 E-value=1.9e-06 Score=67.96 Aligned_cols=40 Identities=28% Similarity=0.510 Sum_probs=37.7
Q ss_pred hhhHhhHHhC-CCCHHHHHHHHHHhCCCHHHHHHHHHhhhh
Q 024447 145 DESLSLVMSM-GFKEQDAKRALRICSQDVGSAIDFLVEEKA 184 (267)
Q Consensus 145 ~~~l~~L~~M-GF~~~~Ar~ALr~~~gdve~A~~wL~~~~~ 184 (267)
++.|..|++| ||++.+|+.||..|+||+++|+++|++...
T Consensus 40 eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Lleg~~ 80 (104)
T 1wj7_A 40 EEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNP 80 (104)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHTCSS
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 4789999999 999999999999999999999999998874
No 73
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=98.10 E-value=2.7e-06 Score=73.89 Aligned_cols=38 Identities=26% Similarity=0.368 Sum_probs=36.4
Q ss_pred hhhHhhHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHhh
Q 024447 145 DESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEE 182 (267)
Q Consensus 145 ~~~l~~L~~MGF~~~~Ar~ALr~~~gdve~A~~wL~~~ 182 (267)
+++|++|++|||++.+|+.||..+++|+++|+++|+++
T Consensus 164 eekV~~l~~MGf~~~~a~~AL~~~~wd~~~A~e~L~~~ 201 (201)
T 3k9o_A 164 TKKIENLCAMGFDRNAVIVALSSKSWDVETATELLLSN 201 (201)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 58999999999999999999999999999999999874
No 74
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.10 E-value=1.9e-06 Score=60.40 Aligned_cols=39 Identities=15% Similarity=0.314 Sum_probs=34.1
Q ss_pred CHHHHHHHHhCCC-CHHHHHHHHHHcCCCHHHHHH-hccCC
Q 024447 216 DIEKIKELVSIGF-EKELVAEALRRNENDSQKALD-DLTNP 254 (267)
Q Consensus 216 d~e~v~~L~~MGF-~~~~A~~ALr~t~ndve~Ald-lL~~p 254 (267)
+...+.+|.+||| +++.-++||++++||+++|++ +|+.+
T Consensus 9 ~a~~L~~L~eMGF~D~~~N~~aL~~~~gnv~~aI~~Ll~~~ 49 (54)
T 2cp8_A 9 TAALMAHLFEMGFCDRQLNLRLLKKHNYNILQVVTELLQLS 49 (54)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHTTTTTCHHHHHHHHHHHS
T ss_pred hHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhcc
Confidence 4467999999999 899999999999999999999 55544
No 75
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.04 E-value=2.8e-06 Score=59.60 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=36.5
Q ss_pred ChhhHhhHHhCCC-CHHHHHHHHHHhCCCHHHHHHHHHhhh
Q 024447 144 PDESLSLVMSMGF-KEQDAKRALRICSQDVGSAIDFLVEEK 183 (267)
Q Consensus 144 d~~~l~~L~~MGF-~~~~Ar~ALr~~~gdve~A~~wL~~~~ 183 (267)
++..+.+|.+||| +.+.-++||+.++||+++||+.|++..
T Consensus 9 ~a~~L~~L~eMGF~D~~~N~~aL~~~~gnv~~aI~~Ll~~~ 49 (54)
T 2cp8_A 9 TAALMAHLFEMGFCDRQLNLRLLKKHNYNILQVVTELLQLS 49 (54)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHTTTTTCHHHHHHHHHHHS
T ss_pred hHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhcc
Confidence 4568999999999 999999999999999999999998764
No 76
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=98.04 E-value=7.7e-06 Score=70.94 Aligned_cols=36 Identities=31% Similarity=0.434 Sum_probs=33.6
Q ss_pred CHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHhc
Q 024447 216 DIEKIKELVSIGFEKELVAEALRRNENDSQKALDDL 251 (267)
Q Consensus 216 d~e~v~~L~~MGF~~~~A~~ALr~t~ndve~AldlL 251 (267)
-.++|++|++|||++++|+.||+.+++|+++|++.|
T Consensus 163 ~eekV~~l~~MGf~~~~a~~AL~~~~wd~~~A~e~L 198 (201)
T 3k9o_A 163 YTKKIENLCAMGFDRNAVIVALSSKSWDVETATELL 198 (201)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 368999999999999999999999999999999944
No 77
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=97.95 E-value=5e-06 Score=71.05 Aligned_cols=40 Identities=20% Similarity=0.424 Sum_probs=36.6
Q ss_pred hhhHhhHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHhhhh
Q 024447 145 DESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKA 184 (267)
Q Consensus 145 ~~~l~~L~~MGF~~~~Ar~ALr~~~gdve~A~~wL~~~~~ 184 (267)
.++|.+|++|||++..|..|+.+|++|++.|++||++++.
T Consensus 131 ~eaI~rL~~mGF~r~~viqA~~ac~knee~Aan~L~~~~~ 170 (171)
T 2qsf_X 131 DQAISRLCELGFERDLVIQVYFACDKNEEAAANILFSDHA 170 (171)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHTTC--
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhccC
Confidence 3899999999999999999999999999999999998764
No 78
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=97.72 E-value=3.1e-05 Score=61.03 Aligned_cols=38 Identities=29% Similarity=0.412 Sum_probs=34.2
Q ss_pred HHHHHHHHhC-CCCHHHHHHHHHHcCCCHHHHHH-hccCC
Q 024447 217 IEKIKELVSI-GFEKELVAEALRRNENDSQKALD-DLTNP 254 (267)
Q Consensus 217 ~e~v~~L~~M-GF~~~~A~~ALr~t~ndve~Ald-lL~~p 254 (267)
.+.|..|++| ||+++.|+.||..++||+++|+. ||..+
T Consensus 40 eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Lleg~ 79 (104)
T 1wj7_A 40 EEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGN 79 (104)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHTCS
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 3679999999 99999999999999999999999 55543
No 79
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=97.40 E-value=0.00017 Score=61.47 Aligned_cols=39 Identities=23% Similarity=0.433 Sum_probs=34.5
Q ss_pred CHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHh-ccCC
Q 024447 216 DIEKIKELVSIGFEKELVAEALRRNENDSQKALDD-LTNP 254 (267)
Q Consensus 216 d~e~v~~L~~MGF~~~~A~~ALr~t~ndve~Aldl-L~~p 254 (267)
+.++|++|++|||++..|++||..|++|++.|+.+ |+++
T Consensus 130 e~eaI~rL~~mGF~r~~viqA~~ac~knee~Aan~L~~~~ 169 (171)
T 2qsf_X 130 DDQAISRLCELGFERDLVIQVYFACDKNEEAAANILFSDH 169 (171)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHTTC-
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhcc
Confidence 44789999999999999999999999999999994 5554
No 80
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=97.24 E-value=0.00029 Score=63.46 Aligned_cols=37 Identities=24% Similarity=0.325 Sum_probs=35.5
Q ss_pred hhhHhhHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHh
Q 024447 145 DESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVE 181 (267)
Q Consensus 145 ~~~l~~L~~MGF~~~~Ar~ALr~~~gdve~A~~wL~~ 181 (267)
+++|.+|++|||++..|+.||..+++|++.|++.|++
T Consensus 216 ~~~v~~l~~mgf~~~~~~~al~~~nWd~~~A~e~L~~ 252 (253)
T 3e46_A 216 TKKIENLCAAGFDRNAVIVALSSKSWDVETATELLLS 252 (253)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 5899999999999999999999999999999999986
No 81
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=97.22 E-value=0.00057 Score=61.53 Aligned_cols=36 Identities=31% Similarity=0.444 Sum_probs=33.5
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHH-hcc
Q 024447 217 IEKIKELVSIGFEKELVAEALRRNENDSQKALD-DLT 252 (267)
Q Consensus 217 ~e~v~~L~~MGF~~~~A~~ALr~t~ndve~Ald-lL~ 252 (267)
.++|++|++|||+++.|+.||..+++|+++|++ +|.
T Consensus 216 ~~~v~~l~~mgf~~~~~~~al~~~nWd~~~A~e~L~~ 252 (253)
T 3e46_A 216 TKKIENLCAAGFDRNAVIVALSSKSWDVETATELLLS 252 (253)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 578999999999999999999999999999999 554
No 82
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.11 E-value=0.0079 Score=46.34 Aligned_cols=98 Identities=11% Similarity=0.068 Sum_probs=68.2
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 024447 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIE 83 (267)
Q Consensus 4 ~~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~ 83 (267)
+-.+.++|..++++|+|++|+..+-.|=+ .-.+.+..-..+.+||+.+++ ..+|. ..|.
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~-----------~~p~~~~~~~~~~~~~~~~~~---~~~A~-------~~~~ 71 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVK-----------RDPENAILYSNRAACLTKLME---FQRAL-------DDCD 71 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------HCTTCHHHHHHHHHHHHHTTC---HHHHH-------HHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------hCCCCHHHHHHHhhHHHhhcc---HHHHH-------HHHH
Confidence 45678999999999999999999877633 333556677889999999876 34444 4444
Q ss_pred HHhCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHhh
Q 024447 84 RAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAK 137 (267)
Q Consensus 84 r~yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~~ 137 (267)
++- +-....-.+.+. .|.+.+..|+.++|...+.++-..
T Consensus 72 ~al----------~~~p~~~~a~~~-----lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 72 TCI----------RLDSKFIKGYIR-----KAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHH----------HHCTTCHHHHHH-----HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHH----------HhhhhhhHHHHH-----HHHHHHHCCCHHHHHHHHHHHHHH
Confidence 332 111112223333 489999999999999998876543
No 83
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=97.04 E-value=0.00091 Score=48.32 Aligned_cols=41 Identities=27% Similarity=0.354 Sum_probs=35.9
Q ss_pred CCChhhHhhHHhC-CCCHHHHHHHHHHhCCCHHHHHHHHHhh
Q 024447 142 QVPDESLSLVMSM-GFKEQDAKRALRICSQDVGSAIDFLVEE 182 (267)
Q Consensus 142 ~vd~~~l~~L~~M-GF~~~~Ar~ALr~~~gdve~A~~wL~~~ 182 (267)
.|..+.|..|.+. |.+..+|+.||..|+||++.|++||...
T Consensus 7 ~it~~~Vk~LRe~TGag~~dcKkAL~e~~GDi~~Ai~~Lr~k 48 (64)
T 2cp9_A 7 GSSKELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLHKE 48 (64)
T ss_dssp CCCCHHHHHHHHHHCCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4566888888886 9999999999999999999999999543
No 84
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=96.94 E-value=0.024 Score=42.21 Aligned_cols=146 Identities=12% Similarity=-0.019 Sum_probs=95.9
Q ss_pred hhhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 024447 3 MGLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGI 82 (267)
Q Consensus 3 ~~~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f 82 (267)
.+..+...|......++|++|+.++..|=+.+..-+.. ...+.....+.++|+.+++ .+.|...+.+|-+.+
T Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~a~~~~ 79 (164)
T 3ro3_A 8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK-----AAERIAYSNLGNAYIFLGE---FETASEYYKKTLLLA 79 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-----HHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCc-----hHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHH
Confidence 45678889999999999999999999998877653221 2335667789999998764 678888888877776
Q ss_pred HHHhCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHhhhccCCCChhhHhhHHhCCCCHHHHH
Q 024447 83 ERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAK 162 (267)
Q Consensus 83 ~r~yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~~~~~l~vd~~~l~~L~~MGF~~~~Ar 162 (267)
.+.- .. ....+.+..-|.+.+..|+.++|...+..+-....+..........+..
T Consensus 80 ~~~~-~~---------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~--------- 134 (164)
T 3ro3_A 80 RQLK-DR---------------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWS--------- 134 (164)
T ss_dssp HHTT-CH---------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH---------
T ss_pred HHhC-Cc---------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHH---------
Confidence 5531 11 1123344455888999999999999988775544333211111111111
Q ss_pred HHH-HHhCCCHHHHHHHHHh
Q 024447 163 RAL-RICSQDVGSAIDFLVE 181 (267)
Q Consensus 163 ~AL-r~~~gdve~A~~wL~~ 181 (267)
.|. ....|+.+.|..++..
T Consensus 135 la~~~~~~g~~~~A~~~~~~ 154 (164)
T 3ro3_A 135 LGNAYTALGNHDQAMHFAEK 154 (164)
T ss_dssp HHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHH
Confidence 121 2234788888887744
No 85
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=96.92 E-value=0.021 Score=44.74 Aligned_cols=110 Identities=21% Similarity=0.257 Sum_probs=75.4
Q ss_pred hhhhhhHhHHHHHHhhchHHHHHHHHhhhhhhcc-------CChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHH
Q 024447 3 MGLMLHANAKSLIKRHMYKDALEVLTMGEEAFSL-------CDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRL 75 (267)
Q Consensus 3 ~~~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~-------c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL 75 (267)
.+..+.++|..++++++|++|+..+..|=+.+.. .++..-..-.+.+.+...+..||+.+++. ..|.
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~---~~A~--- 83 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDL---HEAE--- 83 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCH---HHHH---
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcH---HHHH---
Confidence 3567899999999999999999999888776533 23333333456677788899999999863 3343
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHhh
Q 024447 76 RKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAK 137 (267)
Q Consensus 76 ~~ae~~f~r~yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~~ 137 (267)
..|.++.-.++ ..-.+++.+ |.+.+..|+.++|...+..+-..
T Consensus 84 ----~~~~~al~~~p----------~~~~a~~~~-----g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 84 ----ETSSEVLKREE----------TNEKALFRR-----AKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp ----HHHHHHHHHST----------TCHHHHHHH-----HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHhcCC----------cchHHHHHH-----HHHHHHHhcHHHHHHHHHHHHhc
Confidence 33333331121 122344444 99999999999999988766543
No 86
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=96.88 E-value=0.052 Score=42.84 Aligned_cols=148 Identities=9% Similarity=-0.027 Sum_probs=99.3
Q ss_pred hhhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 024447 3 MGLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGI 82 (267)
Q Consensus 3 ~~~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f 82 (267)
.+..+...|...+..++|++|+.++..|=+.+...+.. ...+.....+.|+|..+++ .++|...+.+|-+.+
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~ 96 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDH-----TAEHRALHQVGMVERMAGN---WDAARRCFLEERELL 96 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCH-----HHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCc-----HHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHH
Confidence 35667888999999999999999999998888766432 2345667788999998765 678888888888887
Q ss_pred HHHhCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHhhhccCCCChhhH-hhHHhCCCCHHHH
Q 024447 83 ERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESL-SLVMSMGFKEQDA 161 (267)
Q Consensus 83 ~r~yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~~~~~l~vd~~~l-~~L~~MGF~~~~A 161 (267)
+ ..|.++... ...+..-|.+.+..|+.++|...+..+-....+.. ++... ..+..
T Consensus 97 ~-~~~~~~~~~--------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~-------- 152 (203)
T 3gw4_A 97 A-SLPEDPLAA--------------SANAYEVATVALHFGDLAGARQEYEKSLVYAQQAD-DQVAIACAFRG-------- 152 (203)
T ss_dssp H-HSCCCHHHH--------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHH--------
T ss_pred H-HcCccHHHH--------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc-chHHHHHHHHH--------
Confidence 7 555443221 12233448888899999999999887654332221 11111 11111
Q ss_pred HHH-HHHhCCCHHHHHHHHHhhh
Q 024447 162 KRA-LRICSQDVGSAIDFLVEEK 183 (267)
Q Consensus 162 r~A-Lr~~~gdve~A~~wL~~~~ 183 (267)
.| +....|+.+.|..++..-.
T Consensus 153 -la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 153 -LGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp -HHHHHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHHHHCcCHHHHHHHHHHHH
Confidence 22 2334678899988875543
No 87
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=96.73 E-value=0.03 Score=44.96 Aligned_cols=97 Identities=19% Similarity=0.300 Sum_probs=67.5
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 024447 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIE 83 (267)
Q Consensus 4 ~~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~ 83 (267)
++.++.+|..++++++|++|+..+..|- |..+-....+.+||+.+++ .++|...+.+|-+.
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~--------------~~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~-- 66 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ--------------DPHSRICFNIGCMYTILKN---MTEAEKAFTRSINR-- 66 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS--------------SCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc--------------CCChHHHHHHHHHHHHcCC---HHHHHHHHHHHHHh--
Confidence 4567899999999999999999998771 2235567788999998876 34555444444332
Q ss_pred HHhCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHhhhc
Q 024447 84 RAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFF 139 (267)
Q Consensus 84 r~yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~~~~ 139 (267)
++ ..-.+ +..-|.+.+..|+.++|...+..+-...+
T Consensus 67 -----~~----------~~~~~-----~~~lg~~~~~~~~~~~A~~~~~~al~~~~ 102 (213)
T 1hh8_A 67 -----DK----------HLAVA-----YFQRGMLYYQTEKYDLAIKDLKEALIQLR 102 (213)
T ss_dssp -----CT----------TCHHH-----HHHHHHHHHHTTCHHHHHHHHHHHHHTTT
T ss_pred -----Cc----------cchHH-----HHHHHHHHHHcccHHHHHHHHHHHHHhCC
Confidence 11 11122 23348888899999999999987755433
No 88
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=96.72 E-value=0.014 Score=44.74 Aligned_cols=116 Identities=15% Similarity=0.049 Sum_probs=79.3
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 024447 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIE 83 (267)
Q Consensus 4 ~~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~ 83 (267)
|+.+.+.|..+.++|+|++|+.++-.|=+. +| +.+..-..+..||+.+++ .++|..-+.+|-+...
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~----~p-------~~~~~~~nlg~~~~~~~~---~~~A~~~~~~al~~~~ 73 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIEL----DP-------SNITFYNNKAAVYFEEKK---FAECVQFCEKAVEVGR 73 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CT-------TCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CC-------CCHHHHHhHHHHHHHhhh---HHHHHHHHHHHHHhCc
Confidence 677889999999999999999999877443 12 345666788999999875 5666666666655443
Q ss_pred HHhCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHhhhccCCCChhhHhhHH
Q 024447 84 RAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVM 152 (267)
Q Consensus 84 r~yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~~~~~l~vd~~~l~~L~ 152 (267)
... .....+ -+.+.-.|.+....|+.++|.+.+.++-. ..+|++.+..|.
T Consensus 74 ~~~-~~~~~~--------------a~~~~~lg~~~~~~~~~~~A~~~~~kal~----~~~~~~~~~~l~ 123 (127)
T 4gcn_A 74 ETR-ADYKLI--------------AKAMSRAGNAFQKQNDLSLAVQWFHRSLS----EFRDPELVKKVK 123 (127)
T ss_dssp HTT-CCHHHH--------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSCCHHHHHHHH
T ss_pred ccc-hhhHHH--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh----hCcCHHHHHHHH
Confidence 332 232222 12333357888899999999998886543 234666665554
No 89
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=96.67 E-value=0.037 Score=41.13 Aligned_cols=111 Identities=13% Similarity=-0.075 Sum_probs=81.6
Q ss_pred hhhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 024447 3 MGLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGI 82 (267)
Q Consensus 3 ~~~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f 82 (267)
++..++..|...+..++|++|+.++..|=+.+...+.. ...+.....+.|||+.+++ .++|...+.++-+.+
T Consensus 48 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~~~ 119 (164)
T 3ro3_A 48 ERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR-----AVEAQSCYSLGNTYTLLQD---YEKAIDYHLKHLAIA 119 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-----HHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc-----HHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHH
Confidence 34677889999999999999999999998887766432 2345667788999998765 678888888887776
Q ss_pred HHHhCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHhh
Q 024447 83 ERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAK 137 (267)
Q Consensus 83 ~r~yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~~ 137 (267)
.+.- .. ....+.+..-+.+.+..|+.++|...+..+-..
T Consensus 120 ~~~~-~~---------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 120 QELK-DR---------------IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHTT-CH---------------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHcc-ch---------------HhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5532 11 111233444578888999999999998876543
No 90
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=96.67 E-value=0.038 Score=46.23 Aligned_cols=152 Identities=14% Similarity=0.008 Sum_probs=101.9
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 024447 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIE 83 (267)
Q Consensus 4 ~~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~ 83 (267)
+..+...|......++|++|+.++..|=+.+.... -..-.+.+.....+.+||+.++ ..++|...+.++-+.++
T Consensus 69 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~a~~~~~ 142 (311)
T 3nf1_A 69 ATMLNILALVYRDQNKYKDAANLLNDALAIREKTL---GKDHPAVAATLNNLAVLYGKRG---KYKEAEPLCKRALEIRE 142 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHHHHcC---cHHHHHHHHHHHHHHHH
Confidence 34567789999999999999999988876654320 0112345666778899998765 57889999999999998
Q ss_pred HHhCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHhhhccC--CCChhhHhhHHhCCCCHHHH
Q 024447 84 RAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQL--QVPDESLSLVMSMGFKEQDA 161 (267)
Q Consensus 84 r~yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~~~~~l--~vd~~~l~~L~~MGF~~~~A 161 (267)
+.+|.+.... ...+..-|.+.+..|+.++|...+..+-....+. .-++.....+..+|
T Consensus 143 ~~~~~~~~~~--------------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la------ 202 (311)
T 3nf1_A 143 KVLGKDHPDV--------------AKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLA------ 202 (311)
T ss_dssp HHHCTTCHHH--------------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHH------
T ss_pred HhcCCCChHH--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH------
Confidence 8887654332 2233445788889999999999998776544333 11333333333222
Q ss_pred HHHHHHhCCCHHHHHHHHHhhh
Q 024447 162 KRALRICSQDVGSAIDFLVEEK 183 (267)
Q Consensus 162 r~ALr~~~gdve~A~~wL~~~~ 183 (267)
-+....|+.+.|+.++..-.
T Consensus 203 --~~~~~~g~~~~A~~~~~~al 222 (311)
T 3nf1_A 203 --SCYLKQGKFKQAETLYKEIL 222 (311)
T ss_dssp --HHHHHHTCHHHHHHHHHHHH
T ss_pred --HHHHHcCCHHHHHHHHHHHH
Confidence 11233578899998875544
No 91
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=96.60 E-value=0.043 Score=44.98 Aligned_cols=152 Identities=13% Similarity=-0.033 Sum_probs=101.6
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 024447 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIE 83 (267)
Q Consensus 4 ~~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~ 83 (267)
+..++..|......++|++|+.++..|=+.+..... ..-.+.+.....+.+||..+++ .+.|...+.+|-+.++
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~ 116 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLG---KDHPAVAATLNNLAVLYGKRGK---YKEAEPLCKRALEIRE 116 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC---TTCHHHHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcC---CcchHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHH
Confidence 456778899999999999999999988766543200 1112345567778899987764 6899999999999999
Q ss_pred HHhCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHhhhccCCC--ChhhHhhHHhCCCCHHHH
Q 024447 84 RAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQV--PDESLSLVMSMGFKEQDA 161 (267)
Q Consensus 84 r~yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~~~~~l~v--d~~~l~~L~~MGF~~~~A 161 (267)
+.+|.+.... ...+..-|.+.+..|+.++|...+.++-........ ++.....+..+|.
T Consensus 117 ~~~~~~~~~~--------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~----- 177 (283)
T 3edt_B 117 KVLGKFHPDV--------------AKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLAS----- 177 (283)
T ss_dssp HHHCTTCHHH--------------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH-----
T ss_pred HHcCCCChHH--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-----
Confidence 8887653221 223444588888999999999999877554333211 3333333333221
Q ss_pred HHHHHHhCCCHHHHHHHHHhhh
Q 024447 162 KRALRICSQDVGSAIDFLVEEK 183 (267)
Q Consensus 162 r~ALr~~~gdve~A~~wL~~~~ 183 (267)
+....|+.+.|+.++..-.
T Consensus 178 ---~~~~~g~~~~A~~~~~~~l 196 (283)
T 3edt_B 178 ---CYLKQGKYQDAETLYKEIL 196 (283)
T ss_dssp ---HHHHHTCHHHHHHHHHHHH
T ss_pred ---HHHHcCCHHHHHHHHHHHH
Confidence 1223578899998875543
No 92
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=96.59 E-value=0.039 Score=46.14 Aligned_cols=115 Identities=16% Similarity=0.010 Sum_probs=83.7
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 024447 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIE 83 (267)
Q Consensus 4 ~~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~ 83 (267)
+..+...|..++..++|++|+.++-.|-+.+..... ..-.+.+....-+.+||+.++ ..++|...+.++-+.++
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~---~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~ 100 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSG---HDHPDVATMLNILALVYRDQN---KYKDAANLLNDALAIRE 100 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC---SSSHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHH
Confidence 345778899999999999999999988776543210 011234556677889998876 57889999999999888
Q ss_pred HHhCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHhhh
Q 024447 84 RAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKF 138 (267)
Q Consensus 84 r~yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~~~ 138 (267)
+.+|.+.... ...+..-|.+.+..|+.++|...+.++-...
T Consensus 101 ~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 141 (311)
T 3nf1_A 101 KTLGKDHPAV--------------AATLNNLAVLYGKRGKYKEAEPLCKRALEIR 141 (311)
T ss_dssp HHHCTTCHHH--------------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHhCCCChHH--------------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 8887654332 2233344778889999999999988775543
No 93
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=96.47 E-value=0.0033 Score=43.43 Aligned_cols=36 Identities=28% Similarity=0.438 Sum_probs=31.9
Q ss_pred HHHHHHHhCCCCHHHH--HHHHHHcCCCHHHHHHhccC
Q 024447 218 EKIKELVSIGFEKELV--AEALRRNENDSQKALDDLTN 253 (267)
Q Consensus 218 e~v~~L~~MGF~~~~A--~~ALr~t~ndve~AldlL~~ 253 (267)
++|.++++|||+.+-. .+.|...+||+.+|+|.++.
T Consensus 12 ~al~qMl~MGF~negGWLt~LL~~k~gDI~~aLD~lq~ 49 (52)
T 1q02_A 12 ESLSQMLSMGFSDEGGWLTRLLQTKNYDIGAALDTIQY 49 (52)
T ss_dssp HHHHHHHTTTCCCTTSHHHHHHHHTTTCHHHHHHHHTT
T ss_pred HHHHHHHHcCCCccccHHHHHHHHccCCHHHHHHHhhh
Confidence 6799999999999854 58999999999999998764
No 94
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=96.47 E-value=0.0036 Score=45.16 Aligned_cols=40 Identities=20% Similarity=0.091 Sum_probs=35.9
Q ss_pred CcCCHHHHHHHHhC-CCCHHHHHHHHHHcCCCHHHHHHhcc
Q 024447 213 KAVDIEKIKELVSI-GFEKELVAEALRRNENDSQKALDDLT 252 (267)
Q Consensus 213 ~~vd~e~v~~L~~M-GF~~~~A~~ALr~t~ndve~AldlL~ 252 (267)
..++.+.|..|.+. |..-..|++||..++||++.|+++|.
T Consensus 6 ~~it~~~Vk~LRe~TGag~~dcKkAL~e~~GDi~~Ai~~Lr 46 (64)
T 2cp9_A 6 SGSSKELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLH 46 (64)
T ss_dssp SCCCCHHHHHHHHHHCCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 34677889999886 99999999999999999999999884
No 95
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=96.38 E-value=0.14 Score=41.68 Aligned_cols=131 Identities=10% Similarity=-0.018 Sum_probs=82.0
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Q 024447 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERA 85 (267)
Q Consensus 6 ~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~r~ 85 (267)
.++.+|..+++.++|++|+..+-.|=+.... .|..+. .-+.+||+.+++ ...|...|.++
T Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~---------~~~~~~-~~~~~~~~~~~~----------~~~A~~~~~~a 68 (228)
T 4i17_A 9 QLKNEGNDALNAKNYAVAFEKYSEYLKLTNN---------QDSVTA-YNCGVCADNIKK----------YKEAADYFDIA 68 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT---------CCHHHH-HHHHHHHHHTTC----------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhccCC---------CCcHHH-HHHHHHHHHhhc----------HHHHHHHHHHH
Confidence 5788999999999999999999888665431 222233 338999999875 34445555555
Q ss_pred hCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHhhhccCCCChhhH----hhHHhCCCCHHHH
Q 024447 86 HGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESL----SLVMSMGFKEQDA 161 (267)
Q Consensus 86 yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~~~~~l~vd~~~l----~~L~~MGF~~~~A 161 (267)
...++. ....+..-|.+.+..|+.++|...+..+-...+. ++... .....+|.
T Consensus 69 l~~~p~---------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~g~----- 125 (228)
T 4i17_A 69 IKKNYN---------------LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPG---NATIEKLYAIYYLKEGQ----- 125 (228)
T ss_dssp HHTTCS---------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHHHH-----
T ss_pred HHhCcc---------------hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHHHhH-----
Confidence 423322 1223344588899999999999998876554222 22221 12222221
Q ss_pred HHHHHHhCCCHHHHHHHHHhh
Q 024447 162 KRALRICSQDVGSAIDFLVEE 182 (267)
Q Consensus 162 r~ALr~~~gdve~A~~wL~~~ 182 (267)
+....|+.+.|+.++..-
T Consensus 126 ---~~~~~~~~~~A~~~~~~a 143 (228)
T 4i17_A 126 ---KFQQAGNIEKAEENYKHA 143 (228)
T ss_dssp ---HHHHTTCHHHHHHHHHHH
T ss_pred ---HHHHhccHHHHHHHHHHH
Confidence 123467888888877443
No 96
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=96.36 E-value=0.039 Score=41.00 Aligned_cols=98 Identities=15% Similarity=0.075 Sum_probs=67.7
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 024447 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIE 83 (267)
Q Consensus 4 ~~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~ 83 (267)
+-.+.++|..++++++|++|+.++-.|=+.. -+.+....-+.+||+.+++ .++|.. .|+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----------p~~~~~~~~~a~~~~~~~~---~~~A~~-------~~~ 62 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-----------PEDARGYSNRAAALAKLMS---FPEAIA-------DCN 62 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------TTCHHHHHHHHHHHHHTTC---HHHHHH-------HHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----------CCChHHHHHHHHHHHHhcC---HHHHHH-------HHH
Confidence 4568899999999999999999998775442 2345677788999998875 344444 444
Q ss_pred HHhCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHhh
Q 024447 84 RAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAK 137 (267)
Q Consensus 84 r~yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~~ 137 (267)
++.-.++ ..-.+. ..-|.+.+..|+.++|...+.++-..
T Consensus 63 ~al~~~p----------~~~~~~-----~~lg~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 63 KAIEKDP----------NFVRAY-----IRKATAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHHCT----------TCHHHH-----HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCC----------CcHHHH-----HHHHHHHHHHhCHHHHHHHHHHHHHh
Confidence 4331121 111223 33488899999999999988876544
No 97
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=96.34 E-value=0.048 Score=45.55 Aligned_cols=123 Identities=14% Similarity=-0.016 Sum_probs=80.2
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCC----------CCHHHHHH
Q 024447 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDI----------SWLSEAGI 73 (267)
Q Consensus 4 ~~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~----------~~l~dA~~ 73 (267)
+..++..|......++|++|+.++..|-+.+...+.. ...+.....+.++|..+.+. ...++|..
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 157 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK-----VGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRN 157 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-----HHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCc-----hHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHH
Confidence 3456777888899999999999998888777654432 23456677889999998872 22445555
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHhhhcc
Q 024447 74 RLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQ 140 (267)
Q Consensus 74 rL~~ae~~f~r~yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~~~~~ 140 (267)
.+..|...|+++.- -...+ + ........+...|.+.+..|+.++|...+..+-...+.
T Consensus 158 ~~~~A~~~~~~a~~----~~~~~-~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 215 (338)
T 3ro2_A 158 ALQAAVDLYEENLS----LVTAL-G----DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 215 (338)
T ss_dssp HHHHHHHHHHHHHH----HHHHH-T----CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHhc-C----CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 56666666665540 00000 1 11223344555688888999999999998877554443
No 98
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=96.33 E-value=0.065 Score=47.78 Aligned_cols=112 Identities=11% Similarity=0.073 Sum_probs=80.6
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Q 024447 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERA 85 (267)
Q Consensus 6 ~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~r~ 85 (267)
.++-+|.....+++|++|+.++..|-+.+..-+.. ...|.....+.++|+.++ ..+.|...+.+|-+.|.+.
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----~~~a~~~~~lg~~y~~~~---~~~~A~~~~~~al~~~~~~ 174 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDD-----IEKAEFHFKVAEAYYHMK---QTHVSMYHILQALDIYQNH 174 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCH-----HHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCCh-----HHHHHHHHHHHHHHHHcC---CcHHHHHHHHHHHHHHHhC
Confidence 45678999999999999999999998887665433 345667778899999877 4688999999998888765
Q ss_pred hCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHhhhcc
Q 024447 86 HGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQ 140 (267)
Q Consensus 86 yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~~~~~ 140 (267)
.+.++ + ....+..-|.+.+..|+.++|.+.+.++-....+
T Consensus 175 ~~~~~-~--------------~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~ 214 (378)
T 3q15_A 175 PLYSI-R--------------TIQSLFVIAGNYDDFKHYDKALPHLEAALELAMD 214 (378)
T ss_dssp TTCHH-H--------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCchh-h--------------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 43121 1 1122233477777888888888888766554433
No 99
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=96.32 E-value=0.087 Score=46.85 Aligned_cols=111 Identities=13% Similarity=0.098 Sum_probs=79.1
Q ss_pred hhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHh
Q 024447 7 LHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERAH 86 (267)
Q Consensus 7 l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~r~y 86 (267)
++-+|...+.+++|++|+.++..|-+.+...+... ..|.....+.|||+.+++ .+.|...+.+|-+.+.+.-
T Consensus 106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----~~a~~~~~lg~~~~~~~~---~~~A~~~~~~al~~~~~~~ 177 (383)
T 3ulq_A 106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRI-----EKAEFFFKMSESYYYMKQ---TYFSMDYARQAYEIYKEHE 177 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHH-----HHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHH-----HHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHhCc
Confidence 34589999999999999999999998876654332 356677889999999764 6889999999988887652
Q ss_pred CCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHhhhcc
Q 024447 87 GKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQ 140 (267)
Q Consensus 87 G~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~~~~~ 140 (267)
....+. .+.+..-|.+.+..|+.++|...+.++-...++
T Consensus 178 -~~~~~~--------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 216 (383)
T 3ulq_A 178 -AYNIRL--------------LQCHSLFATNFLDLKQYEDAISHFQKAYSMAEA 216 (383)
T ss_dssp -TTHHHH--------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -cchHHH--------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 212221 122333466777778888888877766544443
No 100
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=96.32 E-value=0.047 Score=40.12 Aligned_cols=103 Identities=16% Similarity=0.109 Sum_probs=66.2
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q 024447 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIER 84 (267)
Q Consensus 5 ~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~r 84 (267)
-.++.+|..+++.++|++|+..+-.+-+.+.... ..+-...-+.+||+.+++ .++|. ..|++
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~--------~~~~~~~~lg~~~~~~~~---~~~A~-------~~~~~ 64 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGV--------YTPNALYWLGESYYATRN---FQLAE-------AQFRD 64 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSST--------THHHHHHHHHHHHHHTTC---HHHHH-------HHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCc--------ccHHHHHHHHHHHHHhcc---HHHHH-------HHHHH
Confidence 4578899999999999999999988766554321 011345668999998876 34444 44443
Q ss_pred HhCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHhh
Q 024447 85 AHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAK 137 (267)
Q Consensus 85 ~yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~~ 137 (267)
..-.++ .+.....+++ .-|.+.+..|+.++|...+..+-..
T Consensus 65 ~~~~~p-------~~~~~~~~~~-----~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 65 LVSRYP-------THDKAAGGLL-----KLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHCT-------TSTTHHHHHH-----HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCC-------CCcccHHHHH-----HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 331111 0000122333 3388888999999999988866554
No 101
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=96.30 E-value=0.1 Score=46.09 Aligned_cols=150 Identities=9% Similarity=-0.022 Sum_probs=96.9
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 024447 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIE 83 (267)
Q Consensus 4 ~~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~ 83 (267)
+..++..|...++.++|++|+.++-.|-+.+...... ...+.....+.+||+.+++ .++|...+.++-+.+.
T Consensus 223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~ 294 (411)
T 4a1s_A 223 GRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDR-----AAERRANSNLGNSHIFLGQ---FEDAAEHYKRTLALAV 294 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-----HHHHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCc-----HHHHHHHHHHHHHHHHCcC---HHHHHHHHHHHHHHHH
Confidence 4567888999999999999999999988776653221 2234566778888887764 6788888887777665
Q ss_pred HHhCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHhhhccCCCChhhHhhHHhCCCCHHHHHH
Q 024447 84 RAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKR 163 (267)
Q Consensus 84 r~yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~~~~~l~vd~~~l~~L~~MGF~~~~Ar~ 163 (267)
+. |... .....+..-|.+.+..|+.++|..++..+-....+..-.......+..+|
T Consensus 295 ~~-~~~~---------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la-------- 350 (411)
T 4a1s_A 295 EL-GERE---------------VEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLG-------- 350 (411)
T ss_dssp HT-TCHH---------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH--------
T ss_pred Hc-CCHH---------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHH--------
Confidence 53 2211 11233444578888999999999999877554433321111111221111
Q ss_pred HHHHhCCCHHHHHHHHHhhhhh
Q 024447 164 ALRICSQDVGSAIDFLVEEKAK 185 (267)
Q Consensus 164 ALr~~~gdve~A~~wL~~~~~d 185 (267)
-+....|+.+.|+.++..-..-
T Consensus 351 ~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 351 NAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHH
Confidence 1233468999999987655443
No 102
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=96.26 E-value=0.0029 Score=43.72 Aligned_cols=35 Identities=40% Similarity=0.627 Sum_probs=30.9
Q ss_pred hhHhhHHhCCCCHHHHH--HHHHHhCCCHHHHHHHHH
Q 024447 146 ESLSLVMSMGFKEQDAK--RALRICSQDVGSAIDFLV 180 (267)
Q Consensus 146 ~~l~~L~~MGF~~~~Ar--~ALr~~~gdve~A~~wL~ 180 (267)
+.|+++++|||+-+..- +.|...+|||.+|++-|.
T Consensus 12 ~al~qMl~MGF~negGWLt~LL~~k~gDI~~aLD~lq 48 (52)
T 1q02_A 12 ESLSQMLSMGFSDEGGWLTRLLQTKNYDIGAALDTIQ 48 (52)
T ss_dssp HHHHHHHTTTCCCTTSHHHHHHHHTTTCHHHHHHHHT
T ss_pred HHHHHHHHcCCCccccHHHHHHHHccCCHHHHHHHhh
Confidence 67999999999998885 778889999999999764
No 103
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=96.24 E-value=0.0067 Score=42.96 Aligned_cols=40 Identities=15% Similarity=0.357 Sum_probs=35.5
Q ss_pred CcCCHHHHHHHHhC--CCCHHHHHHHHHHcCCCHHHHHH-hcc
Q 024447 213 KAVDIEKIKELVSI--GFEKELVAEALRRNENDSQKALD-DLT 252 (267)
Q Consensus 213 ~~vd~e~v~~L~~M--GF~~~~A~~ALr~t~ndve~Ald-lL~ 252 (267)
..+..+.|.+|.+| ++++..++.+|+.++||++.|++ +|.
T Consensus 6 ~~~~ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~ 48 (59)
T 1wgl_A 6 SGCSEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQ 48 (59)
T ss_dssp SSSCHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 34688999999999 67899999999999999999999 544
No 104
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=96.21 E-value=0.075 Score=44.33 Aligned_cols=147 Identities=12% Similarity=-0.007 Sum_probs=93.8
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 024447 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIE 83 (267)
Q Consensus 4 ~~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~ 83 (267)
+..++..|...+..++|++|+.++-.|=+.+...+. ....+.....++++|+.+++ .++|...+.++-+.+.
T Consensus 183 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~ 254 (338)
T 3ro2_A 183 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD-----KAAERRAYSNLGNAYIFLGE---FETASEYYKKTLLLAR 254 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC-----hHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHH
Confidence 456778899999999999999999888776654322 22345567788999998875 5677777777766655
Q ss_pred HHhCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHhhhccCCCChhhHhhHHhCCCCHHHHHH
Q 024447 84 RAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKR 163 (267)
Q Consensus 84 r~yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~~~~~l~vd~~~l~~L~~MGF~~~~Ar~ 163 (267)
+.- .. .........-|.+.+..|+.++|...+..+-...++..-.......+..+| .
T Consensus 255 ~~~-~~---------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la------~- 311 (338)
T 3ro2_A 255 QLK-DR---------------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLG------N- 311 (338)
T ss_dssp HTT-CH---------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH------H-
T ss_pred hhc-ch---------------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH------H-
Confidence 431 11 112233444578888999999999998877554443322111111222211 1
Q ss_pred HHHHhCCCHHHHHHHHHhh
Q 024447 164 ALRICSQDVGSAIDFLVEE 182 (267)
Q Consensus 164 ALr~~~gdve~A~~wL~~~ 182 (267)
+....|+.+.|..++..-
T Consensus 312 -~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 312 -AYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp -HHHHHTCHHHHHHHHHHH
T ss_pred -HHHHcCChHHHHHHHHHH
Confidence 123357899999887443
No 105
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=96.16 E-value=0.0055 Score=41.91 Aligned_cols=40 Identities=23% Similarity=0.377 Sum_probs=35.5
Q ss_pred hhhHhhHHhC--CCCHHHHHHHHHHhCCCHHHHHHHHHhhhh
Q 024447 145 DESLSLVMSM--GFKEQDAKRALRICSQDVGSAIDFLVEEKA 184 (267)
Q Consensus 145 ~~~l~~L~~M--GF~~~~Ar~ALr~~~gdve~A~~wL~~~~~ 184 (267)
++.+..|.+| .-+...++.+|+.++||+++|++-|++..+
T Consensus 5 e~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~~~ 46 (49)
T 1otr_A 5 ESKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLKEND 46 (49)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhccc
Confidence 4678899999 678999999999999999999999988743
No 106
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=96.13 E-value=0.12 Score=42.23 Aligned_cols=113 Identities=16% Similarity=0.045 Sum_probs=81.3
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 024447 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIE 83 (267)
Q Consensus 4 ~~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~ 83 (267)
+..+...|...+..++|++|+.++..|=+.+..... ..--+.+.....+.+||+.++ ..+.|...+.++-+.++
T Consensus 85 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~ 158 (283)
T 3edt_B 85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG---KFHPDVAKQLNNLALLCQNQG---KAEEVEYYYRRALEIYA 158 (283)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcC---CCChHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHH
Confidence 456778899999999999999999988776532200 001234556677889998776 46889999999999888
Q ss_pred HHhCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHh
Q 024447 84 RAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQA 136 (267)
Q Consensus 84 r~yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~ 136 (267)
+.+|.+.... ...+..-|.+.+..|+.++|...+..+-.
T Consensus 159 ~~~~~~~~~~--------------~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 159 TRLGPDDPNV--------------AKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHSCTTCHHH--------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhcCCCCHHH--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8877653322 22233447788899999999998876644
No 107
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=96.09 E-value=0.0065 Score=43.02 Aligned_cols=44 Identities=16% Similarity=0.234 Sum_probs=38.6
Q ss_pred CCCChhhHhhHHhC--CCCHHHHHHHHHHhCCCHHHHHHHHHhhhh
Q 024447 141 LQVPDESLSLVMSM--GFKEQDAKRALRICSQDVGSAIDFLVEEKA 184 (267)
Q Consensus 141 l~vd~~~l~~L~~M--GF~~~~Ar~ALr~~~gdve~A~~wL~~~~~ 184 (267)
..+.++.+.+|.+| +++....+.+|++++||+|.|++-|++...
T Consensus 6 ~~~~ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~ 51 (59)
T 1wgl_A 6 SGCSEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGE 51 (59)
T ss_dssp SSSCHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSC
T ss_pred CCCCHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcCcC
Confidence 45688999999999 567899999999999999999999987643
No 108
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=96.05 E-value=0.11 Score=45.10 Aligned_cols=148 Identities=12% Similarity=-0.005 Sum_probs=95.7
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 024447 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIE 83 (267)
Q Consensus 4 ~~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~ 83 (267)
+..+...|...+..++|++|+.++-.|-+.+...+.. ...+.....+.+||+.+++ .+.|...+.++-+.+.
T Consensus 187 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~ 258 (406)
T 3sf4_A 187 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK-----AAERRAYSNLGNAYIFLGE---FETASEYYKKTLLLAR 258 (406)
T ss_dssp HHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCH-----HHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCc-----HHHHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHH
Confidence 4467788999999999999999999998887765432 2345567788999988765 5777777777776665
Q ss_pred HHhCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHhhhccCCCChhhHhhHHhCCCCHHHHHH
Q 024447 84 RAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKR 163 (267)
Q Consensus 84 r~yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~~~~~l~vd~~~l~~L~~MGF~~~~Ar~ 163 (267)
+.- .. ......+..-|.+.+..|+.++|...+..+-....+..-.+.....+..+|
T Consensus 259 ~~~-~~---------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la-------- 314 (406)
T 3sf4_A 259 QLK-DR---------------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLG-------- 314 (406)
T ss_dssp HTT-CH---------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------
T ss_pred hCc-Cc---------------hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH--------
Confidence 531 11 112233344578888999999999999877554444322222122222111
Q ss_pred HHHHhCCCHHHHHHHHHhhh
Q 024447 164 ALRICSQDVGSAIDFLVEEK 183 (267)
Q Consensus 164 ALr~~~gdve~A~~wL~~~~ 183 (267)
-+....|+.+.|+.++..-.
T Consensus 315 ~~~~~~g~~~~A~~~~~~al 334 (406)
T 3sf4_A 315 NAYTALGNHDQAMHFAEKHL 334 (406)
T ss_dssp HHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 01223578888888765543
No 109
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=96.01 E-value=0.036 Score=43.41 Aligned_cols=98 Identities=16% Similarity=0.171 Sum_probs=68.2
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 024447 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIE 83 (267)
Q Consensus 4 ~~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~ 83 (267)
+-.++..|..++++++|++|+.++-.|=+.. -+.+.....+.+||+.+++ ..+|. ..|+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----------p~~~~~~~~l~~~~~~~g~---~~~A~-------~~~~ 69 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-----------PANPIYLSNRAAAYSASGQ---HEKAA-------EDAE 69 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----------TTCHHHHHHHHHHHHHTTC---HHHHH-------HHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------CcCHHHHHHHHHHHHHccC---HHHHH-------HHHH
Confidence 4568899999999999999999998875543 2346677888999999875 34444 4444
Q ss_pred HHhCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHhh
Q 024447 84 RAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAK 137 (267)
Q Consensus 84 r~yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~~ 137 (267)
+..-.++. . ...+..-|.+.+..|+.++|...+..+-..
T Consensus 70 ~al~~~p~----------~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 70 LATVVDPK----------Y-----SKAWSRLGLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHCTT----------C-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCC----------C-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 44322221 1 222334488899999999999988866443
No 110
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=95.98 E-value=0.091 Score=41.40 Aligned_cols=114 Identities=12% Similarity=-0.043 Sum_probs=80.4
Q ss_pred hhhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 024447 3 MGLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGI 82 (267)
Q Consensus 3 ~~~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f 82 (267)
.+..++..|...+..++|++|+.++..|=+.+..-+.. ....+.....+.++|+.+++ .++|...+.++-+.+
T Consensus 65 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~ 137 (203)
T 3gw4_A 65 EHRALHQVGMVERMAGNWDAARRCFLEERELLASLPED----PLAASANAYEVATVALHFGD---LAGARQEYEKSLVYA 137 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC----HHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCcc----HHHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHH
Confidence 35677888999999999999999999998887654421 12346677888999999876 567877777776664
Q ss_pred HHHhCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHhhhc
Q 024447 83 ERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFF 139 (267)
Q Consensus 83 ~r~yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~~~~ 139 (267)
++. |... .....+..-|.+.+..|+.++|...+..+-+...
T Consensus 138 ~~~-~~~~---------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 138 QQA-DDQV---------------AIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA 178 (203)
T ss_dssp HHT-TCHH---------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred Hhc-cchH---------------HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 432 1111 1122234458888899999999998886654433
No 111
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=95.85 E-value=0.31 Score=43.20 Aligned_cols=150 Identities=10% Similarity=-0.010 Sum_probs=100.8
Q ss_pred hhhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 024447 3 MGLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGI 82 (267)
Q Consensus 3 ~~~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f 82 (267)
.+..++..|......++|++|+..+..|=+.|..-+.. -.+.+.....+.+||..+++ .+.|...+.+|-+.+
T Consensus 142 ~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~ 214 (383)
T 3ulq_A 142 KAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY----NIRLLQCHSLFATNFLDLKQ---YEDAISHFQKAYSMA 214 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT----HHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc----hHHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHH
Confidence 35677888999999999999999999999888776431 12345566777888888764 678888888888777
Q ss_pred HHHhCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHhhhccCCCChhhHhhHHhCCCCHHHHH
Q 024447 83 ERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAK 162 (267)
Q Consensus 83 ~r~yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~~~~~l~vd~~~l~~L~~MGF~~~~Ar 162 (267)
.+. |..+. ..+.+.--|++.+..|+.++|...+.++-....+....+.....+..+|.
T Consensus 215 ~~~-~~~~~---------------~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~------ 272 (383)
T 3ulq_A 215 EAE-KQPQL---------------MGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQ------ 272 (383)
T ss_dssp HHT-TCHHH---------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHH------
T ss_pred HHc-CChHH---------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH------
Confidence 654 22111 11222334888999999999999998776543333221333334444331
Q ss_pred HHHHHhCCCHHHHHHHHHhhh
Q 024447 163 RALRICSQDVGSAIDFLVEEK 183 (267)
Q Consensus 163 ~ALr~~~gdve~A~~wL~~~~ 183 (267)
+....|+.+.|..++..-.
T Consensus 273 --~~~~~g~~~~A~~~~~~al 291 (383)
T 3ulq_A 273 --IHYKLGKIDKAHEYHSKGM 291 (383)
T ss_dssp --HHHHTTCHHHHHHHHHHHH
T ss_pred --HHHHCCCHHHHHHHHHHHH
Confidence 2233678999998875544
No 112
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=95.81 E-value=0.42 Score=42.44 Aligned_cols=144 Identities=14% Similarity=-0.025 Sum_probs=95.3
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 024447 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIE 83 (267)
Q Consensus 4 ~~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~ 83 (267)
+..+.--|....+.++|++|+..+..|=+.+...+... ..+.....+.|||+.+++ .+.|...+.+|-+.++
T Consensus 182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-----~~~~~~~~lg~~y~~~~~---~~~A~~~~~~al~~~~ 253 (378)
T 3q15_A 182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDR-----FIAISLLNIANSYDRSGD---DQMAVEHFQKAAKVSR 253 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHH
Confidence 45566788999999999999999999988776554332 456677789999999875 5778887877777766
Q ss_pred HHhCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHhhhccCCCChhhHhhHHhCCCCHHHHHH
Q 024447 84 RAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKR 163 (267)
Q Consensus 84 r~yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~~~~~l~vd~~~l~~L~~MGF~~~~Ar~ 163 (267)
..- . +.. ......-|.+.+..|+.++|...+.++-+...+.. ++.....+ ....
T Consensus 254 ~~~------------~--~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~--------~~l~ 307 (378)
T 3q15_A 254 EKV------------P--DLL---PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARS-HKFYKELF--------LFLQ 307 (378)
T ss_dssp HHC------------G--GGH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTC-CSCHHHHH--------HHHH
T ss_pred hhC------------C--hhH---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHH--------HHHH
Confidence 542 1 111 22233448888999999999999987766444331 22111111 1122
Q ss_pred HHHHhCCC---HHHHHHHHHh
Q 024447 164 ALRICSQD---VGSAIDFLVE 181 (267)
Q Consensus 164 ALr~~~gd---ve~A~~wL~~ 181 (267)
++....|+ ++.|+.++..
T Consensus 308 ~ly~~~~~~~~~~~al~~~~~ 328 (378)
T 3q15_A 308 AVYKETVDERKIHDLLSYFEK 328 (378)
T ss_dssp HHHSSSCCHHHHHHHHHHHHH
T ss_pred HHHhCCCcHHHHHHHHHHHHh
Confidence 33344556 7777777644
No 113
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=95.81 E-value=0.018 Score=48.47 Aligned_cols=58 Identities=21% Similarity=0.268 Sum_probs=46.8
Q ss_pred HhhhhccCCchhHhh-hhHhhHhhhccCCCChhhHhhHHhCC-CCHHHHHHHHHHhCCCHHHHHHHHHhhh
Q 024447 115 GVAAYHSGQFDKARN-ALTSAQAKFFQLQVPDESLSLVMSMG-FKEQDAKRALRICSQDVGSAIDFLVEEK 183 (267)
Q Consensus 115 g~v~~h~g~~d~A~~-~l~~a~~~~~~l~vd~~~l~~L~~MG-F~~~~Ar~ALr~~~gdve~A~~wL~~~~ 183 (267)
.|+. |.||.++|.. .+...+ .++..|++.| |+..++..||+..+|||+.|+--|....
T Consensus 83 Aw~~-~~Gd~~~Av~~ci~~R~----------~K~~eL~s~G~~~~~~~~~aL~~~~Gdv~~Al~eLqr~l 142 (162)
T 4dbg_B 83 AWLD-RHGNLDEAVEECVRTRR----------RKVQELQSLGFGPEEGSLQALFQHGGDVSRALTELQRQR 142 (162)
T ss_dssp HHHH-TTTCHHHHHHHHHHHHH----------HHHHHHHHTTCCGGGTHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHH-ccCChHHHHHHHHHHHH----------HHHHHHHhcCCchHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 5556 8899998887 444444 4588899999 8899999999999999999998775543
No 114
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=95.76 E-value=0.28 Score=42.59 Aligned_cols=147 Identities=14% Similarity=0.040 Sum_probs=95.2
Q ss_pred hhhhhHhHHHHHHhhc--------------------hHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhC
Q 024447 4 GLMLHANAKSLIKRHM--------------------YKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLR 63 (267)
Q Consensus 4 ~~~l~ek~r~~~~~~~--------------------y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~ 63 (267)
+..+...|......++ |++|+.++..|-+.+...+. -...+.....+.++|+.++
T Consensus 127 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~-----~~~~~~~~~~la~~~~~~g 201 (406)
T 3sf4_A 127 ARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGD-----RAAQGRAFGNLGNTHYLLG 201 (406)
T ss_dssp HHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccC-----cHHHHHHHHHHHHHHHHcc
Confidence 4467788889999999 99999988888776654432 2345667778899999887
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHhhhccCCC
Q 024447 64 DISWLSEAGIRLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQV 143 (267)
Q Consensus 64 ~~~~l~dA~~rL~~ae~~f~r~yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~~~~~l~v 143 (267)
+ .++|...+.+|-+.+.+. |... .....+..-|.+.+..|+.++|...+..+-...+....
T Consensus 202 ~---~~~A~~~~~~al~~~~~~-~~~~---------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 262 (406)
T 3sf4_A 202 N---FRDAVIAHEQRLLIAKEF-GDKA---------------AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD 262 (406)
T ss_dssp B---HHHHHHHHHHHHHHHHHT-TCHH---------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred C---HHHHHHHHHHHHHHHHhc-CCcH---------------HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcC
Confidence 5 677888888777766652 1211 11234445588888999999999999877654444322
Q ss_pred ChhhHhhHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHhh
Q 024447 144 PDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEE 182 (267)
Q Consensus 144 d~~~l~~L~~MGF~~~~Ar~ALr~~~gdve~A~~wL~~~ 182 (267)
.......+..+|. +....|+.+.|+.++..-
T Consensus 263 ~~~~~~~~~~la~--------~~~~~g~~~~A~~~~~~a 293 (406)
T 3sf4_A 263 RAVEAQSCYSLGN--------TYTLLQDYEKAIDYHLKH 293 (406)
T ss_dssp HHHHHHHHHHHHH--------HHHHTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHH--------HHHHhCcHHHHHHHHHHH
Confidence 2222222222221 223367888888876443
No 115
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=95.75 E-value=0.068 Score=49.07 Aligned_cols=109 Identities=17% Similarity=0.082 Sum_probs=76.4
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccC-----ChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHH
Q 024447 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLC-----DPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKA 78 (267)
Q Consensus 4 ~~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c-----~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~a 78 (267)
+-.+...|..++++++|++|+..+-.|=+.+..+ ..+..+.-.+.+.+...+.|||+.+++ ...|
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~----------~~~A 292 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSD----------WQGA 292 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTC----------HHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccC----------HHHH
Confidence 4457889999999999999999998887755442 112222334567778889999999886 3455
Q ss_pred HHHHHHHhCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHhh
Q 024447 79 REGIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAK 137 (267)
Q Consensus 79 e~~f~r~yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~~ 137 (267)
...|.+..-.++ ..-.+++.+ |.+.+..|+.++|...+..+-..
T Consensus 293 ~~~~~~al~~~p----------~~~~a~~~l-----g~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 293 VDSCLEALEIDP----------SNTKALYRR-----AQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HHHHHHHHTTCT----------TCHHHHHHH-----HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCc----------hhHHHHHHH-----HHHHHHccCHHHHHHHHHHHHHh
Confidence 666666654443 223344444 88889999999999888866543
No 116
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=95.63 E-value=0.33 Score=39.18 Aligned_cols=139 Identities=17% Similarity=0.044 Sum_probs=76.5
Q ss_pred hhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHH-----
Q 024447 7 LHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREG----- 81 (267)
Q Consensus 7 l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~----- 81 (267)
+...|...++.++|++|+.++..|=+......+ .....+.....++.||..+++ .++|..-+.++-+.
T Consensus 41 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~~~~~~~ 113 (258)
T 3uq3_A 41 LNNRAAAEYEKGEYETAISTLNDAVEQGREMRA----DYKVISKSFARIGNAYHKLGD---LKKTIEYYQKSLTEHRTAD 113 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCccccc----chHHHHHHHHHHHHHHHHccc---HHHHHHHHHHHHhcCchhH
Confidence 344555555555555555555554443322211 111226677788889988765 46677766666552
Q ss_pred --------------HHHHhCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHhhhccCCCChhh
Q 024447 82 --------------IERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDES 147 (267)
Q Consensus 82 --------------f~r~yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~~~~~l~vd~~~ 147 (267)
|++.... .++ ....+...|.+.+..|+.++|...+.++-... +..
T Consensus 114 ~~~~~~~~~~a~~~~~~~~~~------------~~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~------~~~ 172 (258)
T 3uq3_A 114 ILTKLRNAEKELKKAEAEAYV------------NPE---KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA------PED 172 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC------------CHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTC
T ss_pred HHHHHhHHHHHHHHHHHHHHc------------Ccc---hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC------ccc
Confidence 2221111 121 12344556888999999999999988765432 211
Q ss_pred HhhHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHh
Q 024447 148 LSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVE 181 (267)
Q Consensus 148 l~~L~~MGF~~~~Ar~ALr~~~gdve~A~~wL~~ 181 (267)
...+..+| -+....|+.+.|+.++..
T Consensus 173 ~~~~~~l~--------~~~~~~~~~~~A~~~~~~ 198 (258)
T 3uq3_A 173 ARGYSNRA--------AALAKLMSFPEAIADCNK 198 (258)
T ss_dssp HHHHHHHH--------HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHH--------HHHHHhCCHHHHHHHHHH
Confidence 12222211 112346788888887744
No 117
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=95.60 E-value=0.45 Score=38.32 Aligned_cols=103 Identities=13% Similarity=0.024 Sum_probs=71.5
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 024447 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIE 83 (267)
Q Consensus 4 ~~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~ 83 (267)
+-.+...|..+++.++|++|+.++-.|=+.. +.+....-+.+||+.+++ .+.|..-+.++-+...
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~------------~~~~~~~~~~~~~~~~~~---~~~A~~~~~~a~~~~~ 69 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH------------KDITYLNNRAAAEYEKGE---YETAISTLNDAVEQGR 69 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------------CCTHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh------------ccHHHHHHHHHHHHHccc---HHHHHHHHHHHHHhCc
Confidence 4568899999999999999999999887654 223455678999999875 4556555555544433
Q ss_pred HHhCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHh
Q 024447 84 RAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQA 136 (267)
Q Consensus 84 r~yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~ 136 (267)
... +........+..-|.+.+..|+.++|...+.++-.
T Consensus 70 ~~~---------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 107 (258)
T 3uq3_A 70 EMR---------------ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT 107 (258)
T ss_dssp HTT---------------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccc---------------cchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 221 11222344555568888899999999998877654
No 118
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=95.56 E-value=0.11 Score=38.43 Aligned_cols=98 Identities=16% Similarity=0.191 Sum_probs=68.1
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 024447 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIE 83 (267)
Q Consensus 4 ~~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~ 83 (267)
+..++..|..+++.++|++|+.++-.|=+... +.+.....+.+||+.+++. ++|...+.++-+.
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-----------~~~~~~~~l~~~~~~~~~~---~~A~~~~~~al~~-- 72 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNP-----------LVAVYYTNRALCYLKMQQP---EQALADCRRALEL-- 72 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------TCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-----------CcHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHh--
Confidence 45678999999999999999999988766532 2355677889999988764 4444444433321
Q ss_pred HHhCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHhh
Q 024447 84 RAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAK 137 (267)
Q Consensus 84 r~yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~~ 137 (267)
++. . ...+..-|.+.+..|+.++|...+..+-..
T Consensus 73 -----~p~---------~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 73 -----DGQ---------S------VKAHFFLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp -----CTT---------C------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----Cch---------h------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 111 1 122334588899999999999988876544
No 119
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=95.52 E-value=0.21 Score=44.02 Aligned_cols=147 Identities=14% Similarity=0.081 Sum_probs=92.9
Q ss_pred hhhhhHhHHHHHHhhc-----------------hHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCC
Q 024447 4 GLMLHANAKSLIKRHM-----------------YKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDIS 66 (267)
Q Consensus 4 ~~~l~ek~r~~~~~~~-----------------y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~ 66 (267)
+..+...|......++ |++|+.++-.|-+.+...+ .....+.....+.++|+.+++
T Consensus 166 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~-----~~~~~~~~~~~la~~~~~~g~-- 238 (411)
T 4a1s_A 166 GRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLG-----DRGAQGRACGNLGNTYYLLGD-- 238 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHT-----CHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHcCC--
Confidence 3456778888899999 7777777777655543322 223456677788999998765
Q ss_pred CHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHhhhccCCCChh
Q 024447 67 WLSEAGIRLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDE 146 (267)
Q Consensus 67 ~l~dA~~rL~~ae~~f~r~yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~~~~~l~vd~~ 146 (267)
.++|...+.++-+.+.+. |.... ..+.+..-|.+.+..|+.++|...+..+-....+......
T Consensus 239 -~~~A~~~~~~al~~~~~~-~~~~~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 301 (411)
T 4a1s_A 239 -FQAAIEHHQERLRIAREF-GDRAA---------------ERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREV 301 (411)
T ss_dssp -HHHHHHHHHHHHHHHHHH-TCHHH---------------HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred -hHHHHHHHHHHHHHHHhc-CCcHH---------------HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 677888888877776652 22211 1233444588888999999999999877655444322211
Q ss_pred hHhhHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHhh
Q 024447 147 SLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEE 182 (267)
Q Consensus 147 ~l~~L~~MGF~~~~Ar~ALr~~~gdve~A~~wL~~~ 182 (267)
....+..+| -+....|+.+.|..++..-
T Consensus 302 ~~~~~~~la--------~~~~~~g~~~~A~~~~~~a 329 (411)
T 4a1s_A 302 EAQSCYSLG--------NTYTLLHEFNTAIEYHNRH 329 (411)
T ss_dssp HHHHHHHHH--------HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHH--------HHHHHcCCHHHHHHHHHHH
Confidence 122222211 1233468899999887544
No 120
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=95.42 E-value=0.37 Score=33.77 Aligned_cols=96 Identities=13% Similarity=0.022 Sum_probs=65.0
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q 024447 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIER 84 (267)
Q Consensus 5 ~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~r 84 (267)
-.++..|..++..++|++|+.++..|=+.+. +.+.....+.+||+.+++ .++|...+.++-+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-----------~~~~~~~~~a~~~~~~~~---~~~A~~~~~~~~~~--- 67 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDP-----------HNHVLYSNRSAAYAKKGD---YQKAYEDGCKTVDL--- 67 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------TCHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-----------CcHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHh---
Confidence 4578899999999999999999988765432 224566778899998875 34454444443322
Q ss_pred HhCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHh
Q 024447 85 AHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQA 136 (267)
Q Consensus 85 ~yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~ 136 (267)
++ .. . ..+..-|.+.+..|+.++|...+..+-.
T Consensus 68 ----~~---------~~-~-----~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 68 ----KP---------DW-G-----KGYSRKAAALEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp ----CT---------TC-H-----HHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ----Cc---------cc-H-----HHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 11 11 1 1233347788899999999998876543
No 121
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=95.38 E-value=0.076 Score=51.35 Aligned_cols=124 Identities=11% Similarity=0.134 Sum_probs=92.1
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhh----hhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 024447 5 LMLHANAKSLIKRHMYKDALEVLTMG----EEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKARE 80 (267)
Q Consensus 5 ~~l~ek~r~~~~~~~y~~al~~ll~a----d~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~ 80 (267)
..+.+++..+..+|+|++|+.++..| .+.|..-.+.++.+.+|.|.+- .+....++|.....++-.
T Consensus 310 ~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y----------~~~g~~~eA~~~~~~aL~ 379 (490)
T 3n71_A 310 KDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVL----------SYLQAYEEASHYARRMVD 379 (490)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHH----------HHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----------HHhcCHHHHHHHHHHHHH
Confidence 34567888888999999999877655 5567788899999999988764 234678999999999999
Q ss_pred HHHHHhCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHhhhcc-CCCChhhHhhHH
Q 024447 81 GIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQ-LQVPDESLSLVM 152 (267)
Q Consensus 81 ~f~r~yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~~~~~-l~vd~~~l~~L~ 152 (267)
.+++.||.++--+.....+ | |.+.+++|+.++|..++.+|-+-... +-.|...+..+.
T Consensus 380 i~~~~lG~~Hp~~a~~l~n------L--------a~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~ 438 (490)
T 3n71_A 380 GYMKLYHHNNAQLGMAVMR------A--------GLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLE 438 (490)
T ss_dssp HHHHHSCTTCHHHHHHHHH------H--------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHH------H--------HHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 9999999998776444321 1 56677999999999999877543322 233444444443
No 122
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=95.34 E-value=0.017 Score=39.45 Aligned_cols=35 Identities=23% Similarity=0.272 Sum_probs=31.1
Q ss_pred HHHHHHHhC--CCCHHHHHHHHHHcCCCHHHHHHhcc
Q 024447 218 EKIKELVSI--GFEKELVAEALRRNENDSQKALDDLT 252 (267)
Q Consensus 218 e~v~~L~~M--GF~~~~A~~ALr~t~ndve~AldlL~ 252 (267)
+.+..|.+| .-+...++.+|+.++||+++|+++|-
T Consensus 6 ~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL 42 (49)
T 1otr_A 6 SKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLL 42 (49)
T ss_dssp HHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 568899999 78899999999999999999999543
No 123
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=95.32 E-value=0.11 Score=40.70 Aligned_cols=60 Identities=15% Similarity=0.087 Sum_probs=42.2
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHH
Q 024447 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKA 78 (267)
Q Consensus 5 ~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~a 78 (267)
-.+...|....++|+|++|+..+-.|=+. +| |.+-...-+.+||+.+++ .++|...+.++
T Consensus 6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~----~p-------~~~~~~~~la~~~~~~~~---~~~a~~~~~~~ 65 (184)
T 3vtx_A 6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKA----DP-------NNVETLLKLGKTYMDIGL---PNDAIESLKKF 65 (184)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CT-------TCHHHHHHHHHHHHHTTC---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CC-------CCHHHHHHHHHHHHHCCC---HHHHHHHHHHH
Confidence 35678899999999999999999877443 22 234445667889988775 44555555444
No 124
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=95.16 E-value=0.22 Score=37.69 Aligned_cols=98 Identities=14% Similarity=0.059 Sum_probs=67.2
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 024447 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIE 83 (267)
Q Consensus 4 ~~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~ 83 (267)
+..++..|..+++.++|++|+..+..|=+.... .+.....+.+||+.+++ .++|..-+.++-+.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-----------~~~~~~~~a~~~~~~~~---~~~A~~~~~~a~~~-- 76 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPS-----------NAIYYGNRSLAYLRTEC---YGYALGDATRAIEL-- 76 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-----------ChHHHHHHHHHHHHcCC---HHHHHHHHHHHHHh--
Confidence 456889999999999999999999887654322 24556678999998765 34444444443332
Q ss_pred HHhCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHhh
Q 024447 84 RAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAK 137 (267)
Q Consensus 84 r~yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~~ 137 (267)
++. .- ..+..-|.+.+..|+.++|...+.++-..
T Consensus 77 -----~~~----------~~-----~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 77 -----DKK----------YI-----KGYYRRAASNMALGKFRAALRDYETVVKV 110 (166)
T ss_dssp -----CTT----------CH-----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----Ccc----------cH-----HHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 111 11 12334588888999999999998876543
No 125
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=95.09 E-value=0.52 Score=33.63 Aligned_cols=104 Identities=14% Similarity=0.070 Sum_probs=71.4
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 024447 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIE 83 (267)
Q Consensus 4 ~~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~ 83 (267)
+-.++..|..+++.++|++|+.++..|=+... +.+.....+.+||+..++ .++|...+.++-....
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-----------~~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~~ 69 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDP-----------TNMTYITNQAAVYFEKGD---YNKCRELCEKAIEVGR 69 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------TCHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-----------ccHHHHHHHHHHHHHhcc---HHHHHHHHHHHHhhcc
Confidence 34678899999999999999999988765432 224566788999998875 4566666666655443
Q ss_pred HHhCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHh
Q 024447 84 RAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQA 136 (267)
Q Consensus 84 r~yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~ 136 (267)
.. +.+. ......+..-|.+.+..|+.++|...+..+-.
T Consensus 70 ~~-~~~~--------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 70 EN-REDY--------------RQIAKAYARIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HS-TTCH--------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cc-chhH--------------HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 22 1111 11123344558888899999999998876644
No 126
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=95.07 E-value=0.39 Score=34.18 Aligned_cols=97 Identities=13% Similarity=0.002 Sum_probs=66.0
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q 024447 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIER 84 (267)
Q Consensus 5 ~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~r 84 (267)
-.++..|...+..++|++|+.++..+=+... +.+.....+.+||+.+++ .++|..-+.++-+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-----------~~~~~~~~~a~~~~~~~~---~~~A~~~~~~~~~~--- 75 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNP-----------ANAVYFCNRAAAYSKLGN---YAGAVQDCERAICI--- 75 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------TCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-----------CCHHHHHHHHHHHHHhhc---hHHHHHHHHHHHhc---
Confidence 4678899999999999999999987765422 235567788999998775 34444444444321
Q ss_pred HhCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHhh
Q 024447 85 AHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAK 137 (267)
Q Consensus 85 ~yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~~ 137 (267)
++ . .- ..+..-|.+.+..|+.++|...+..+-..
T Consensus 76 ----~~---------~-~~-----~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 76 ----DP---------A-YS-----KAYGRMGLALSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp ----CT---------T-CH-----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----Cc---------c-CH-----HHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 11 1 11 12234478888999999999988866543
No 127
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=95.02 E-value=0.25 Score=35.71 Aligned_cols=98 Identities=14% Similarity=0.063 Sum_probs=65.9
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 024447 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIE 83 (267)
Q Consensus 4 ~~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~ 83 (267)
...+...|..+++.++|++|+.++..|=+.... .+-....+.+||+.+++ ..+|...+.++-+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-----------~~~~~~~la~~~~~~~~---~~~A~~~~~~a~~~-- 79 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-----------DAKLYSNRAACYTKLLE---FQLALKDCEECIQL-- 79 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-----------CHHHHHHHHHHHTTTTC---HHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----------cHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHh--
Confidence 346788999999999999999999888664322 24456678888877654 45555554444332
Q ss_pred HHhCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHhh
Q 024447 84 RAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAK 137 (267)
Q Consensus 84 r~yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~~ 137 (267)
++ .... .+..-|.+.+..|+.++|...+..+-..
T Consensus 80 -----~~----------~~~~-----~~~~la~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 80 -----EP----------TFIK-----GYTRKAAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp -----CT----------TCHH-----HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----CC----------CchH-----HHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 11 1111 2233478888999999999988866543
No 128
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=95.01 E-value=0.27 Score=40.61 Aligned_cols=62 Identities=16% Similarity=0.313 Sum_probs=45.3
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHH
Q 024447 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRK 77 (267)
Q Consensus 5 ~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ 77 (267)
-.++.+|..++++|+|++|+..|-.+-+.+.... ..+-..+.+.+||+.+++ .+.|...+.+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~--------~~~~a~~~lg~~~~~~~~---~~~A~~~~~~ 66 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGP--------YSQQVQLDLIYAYYKNAD---LPLAQAAIDR 66 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST--------THHHHHHHHHHHHHHTTC---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh--------HHHHHHHHHHHHHHhcCC---HHHHHHHHHH
Confidence 4578999999999999999999998887655422 123456778999999886 3444443333
No 129
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=94.94 E-value=0.55 Score=41.07 Aligned_cols=114 Identities=15% Similarity=0.050 Sum_probs=72.1
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q 024447 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIER 84 (267)
Q Consensus 5 ~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~r 84 (267)
..++-.|...+.+++|++|+.++..|=+.+...+... ..+.....+.++|+... .+++|...+.++-+.+.+
T Consensus 54 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----~~~~~~~~la~~~~~~G---~~~~A~~~~~~al~~~~~ 125 (373)
T 1hz4_A 54 VATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWH-----YALWSLIQQSEILFAQG---FLQTAWETQEKAFQLINE 125 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHH-----HHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHH
Confidence 3456667777888888888888887777666544321 12334456677777665 456777777777666655
Q ss_pred HhCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHhhhcc
Q 024447 85 AHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQ 140 (267)
Q Consensus 85 ~yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~~~~~ 140 (267)
..|.+. +. ....+..-|.+.+..|+.++|..++..+-+..++
T Consensus 126 ~~~~~~-----------~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 167 (373)
T 1hz4_A 126 QHLEQL-----------PM---HEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS 167 (373)
T ss_dssp TTCTTS-----------TH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred hccccC-----------cH---HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence 443211 11 1223344578888999999999998877554443
No 130
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=94.92 E-value=0.53 Score=39.73 Aligned_cols=95 Identities=14% Similarity=0.084 Sum_probs=64.1
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Q 024447 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERA 85 (267)
Q Consensus 6 ~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~r~ 85 (267)
.+...|+.+++.++|++|+.++-.+=+... +.+....-+.+||+.+++ .+.|..-+.++-+.
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-----------~~~~~~~~~a~~~~~~~~---~~~A~~~~~~~~~~---- 66 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGDP-----------DNYIAYYRRATVFLAMGK---SKAALPDLTKVIAL---- 66 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------TCHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-----------ccHHHHHHHHHHHHHccC---HHHHHHHHHHHHHh----
Confidence 467889999999999999999987755321 234566788999999876 34444444433322
Q ss_pred hCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHh
Q 024447 86 HGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQA 136 (267)
Q Consensus 86 yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~ 136 (267)
++ .... .+..-|.+.+..|+.++|...+..+-.
T Consensus 67 ---~~----------~~~~-----~~~~l~~~~~~~~~~~~A~~~~~~~~~ 99 (359)
T 3ieg_A 67 ---KM----------DFTA-----ARLQRGHLLLKQGKLDEAEDDFKKVLK 99 (359)
T ss_dssp ---CT----------TCHH-----HHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred ---CC----------Ccch-----HHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence 11 1112 233447888899999999998876643
No 131
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=94.88 E-value=0.47 Score=35.88 Aligned_cols=127 Identities=13% Similarity=0.045 Sum_probs=79.9
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 024447 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIE 83 (267)
Q Consensus 4 ~~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~ 83 (267)
+..++..|...++.++|++|+.++-.+-+.+.. .+.....+.++|+..++ .++|...+.++-+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~---~~~A~~~~~~~~~~-- 71 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAF-----------DVDVALHLGIAYVKTGA---VDRGTELLERSLAD-- 71 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC-----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH--
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-----------ChHHHHHHHHHHHHcCC---HHHHHHHHHHHHhc--
Confidence 456788999999999999999999887654332 24556778899988765 45555555544332
Q ss_pred HHhCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHhhhccCCCChhhHhhHHhCCCCHHHHHH
Q 024447 84 RAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKR 163 (267)
Q Consensus 84 r~yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~~~~~l~vd~~~l~~L~~MGF~~~~Ar~ 163 (267)
. .+ .. ..+...+.+.+..|+.++|...+.++-...+. +. ..+ ...
T Consensus 72 --~-~~-----------~~------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~---~~~---------~~~ 116 (186)
T 3as5_A 72 --A-PD-----------NV------KVATVLGLTYVQVQKYDLAVPLLIKVAEANPI---NF---NVR---------FRL 116 (186)
T ss_dssp --C-TT-----------CH------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CH---HHH---------HHH
T ss_pred --C-CC-----------CH------HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcH---hH---HHH---------HHH
Confidence 1 11 11 12233477788889999999988876543221 11 111 111
Q ss_pred H-HHHhCCCHHHHHHHHHh
Q 024447 164 A-LRICSQDVGSAIDFLVE 181 (267)
Q Consensus 164 A-Lr~~~gdve~A~~wL~~ 181 (267)
| +....|+.+.|+.++..
T Consensus 117 a~~~~~~~~~~~A~~~~~~ 135 (186)
T 3as5_A 117 GVALDNLGRFDEAIDSFKI 135 (186)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHHH
Confidence 2 12336788999887743
No 132
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=94.82 E-value=0.4 Score=36.55 Aligned_cols=97 Identities=15% Similarity=0.055 Sum_probs=64.8
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Q 024447 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERA 85 (267)
Q Consensus 6 ~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~r~ 85 (267)
.++..|..+++.++|++|+.++-.|=+. -.+.+-....+.+||+.+++ ...|...|++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~-----------~p~~~~~~~~lg~~~~~~g~----------~~~A~~~~~~a 78 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML-----------DHYDARYFLGLGACRQSLGL----------YEQALQSYSYG 78 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------CTTCHHHHHHHHHHHHHTTC----------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh-----------CCccHHHHHHHHHHHHHHhh----------HHHHHHHHHHH
Confidence 4678899999999999999998665432 22334455678999998775 34455555554
Q ss_pred hCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHhhh
Q 024447 86 HGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKF 138 (267)
Q Consensus 86 yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~~~ 138 (267)
.-.+ ...++ + +..-|.+.+..|+.++|...+..+-...
T Consensus 79 l~~~---------p~~~~-~-----~~~lg~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 79 ALMD---------INEPR-F-----PFHAAECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHC---------TTCTH-H-----HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcC---------CCCcH-H-----HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3111 11222 2 2234888899999999999988765543
No 133
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.77 E-value=0.32 Score=35.92 Aligned_cols=101 Identities=20% Similarity=0.153 Sum_probs=67.3
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 024447 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIE 83 (267)
Q Consensus 4 ~~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~ 83 (267)
+..+...|..+++.++|++|+.++..+=+.... . +..+.....+..||+.+++ .++|..-+.++-+.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~---~-----~~~~~~~~~~a~~~~~~~~---~~~A~~~~~~~~~~-- 94 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDAT---P-----QDQAVLHRNRAACHLKLED---YDKAETEASKAIEK-- 94 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCC---H-----HHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc---c-----hHHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHhh--
Confidence 346788999999999999999999877543221 0 1146777889999998875 44554444443322
Q ss_pred HHhCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHhh
Q 024447 84 RAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAK 137 (267)
Q Consensus 84 r~yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~~ 137 (267)
+ + .. ...+...|.+.+..|+.++|...+.++-..
T Consensus 95 --~---~----------~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 95 --D---G----------GD-----VKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp --T---S----------CC-----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred --C---c----------cC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 1 1 11 122334588888999999999988866543
No 134
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=94.61 E-value=0.43 Score=38.23 Aligned_cols=108 Identities=17% Similarity=0.162 Sum_probs=68.2
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccc-----hhhhhhhHHHHHHHhCCCCCHHHHHHHHHHH
Q 024447 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDN-----GPLLQIDMVWCYFMLRDISWLSEAGIRLRKA 78 (267)
Q Consensus 4 ~~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn-----~a~l~ldivwcy~~l~~~~~l~dA~~rL~~a 78 (267)
+-.+..+|..++++++|++|+.++..|=+.+..........++. .+.+...+..||+.+++ ..+|...+.+|
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~a 114 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKD---YPKAIDHASKV 114 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcC---HHHHHHHHHHH
Confidence 44678999999999999999999988876554432100000000 12455677888888765 45555555444
Q ss_pred HHHHHHHhCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHh
Q 024447 79 REGIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQA 136 (267)
Q Consensus 79 e~~f~r~yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~ 136 (267)
-+. ++ ..-.++ ..-|.+.+..|+.++|...+..+-.
T Consensus 115 l~~-------~p----------~~~~~~-----~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 115 LKI-------DK----------NNVKAL-----YKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp HHH-------ST----------TCHHHH-----HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHh-------Cc----------ccHHHH-----HHHHHHHHHcccHHHHHHHHHHHHH
Confidence 432 11 111223 3348888899999999998876644
No 135
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=94.53 E-value=0.27 Score=46.07 Aligned_cols=108 Identities=18% Similarity=0.172 Sum_probs=72.1
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCC---h-hhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHH
Q 024447 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCD---P-KVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAR 79 (267)
Q Consensus 4 ~~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~---~-~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae 79 (267)
+-.++.+|..++++++|++|+..+-.|=+...... . .-.+.-...+.+...+.+||+.+++ ...|..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~---~~~A~~------ 338 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLRE---YTKAVE------ 338 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTC---HHHHHH------
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcC---HHHHHH------
Confidence 34678999999999999999999988866554432 1 1111122336677789999999875 344444
Q ss_pred HHHHHHhCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHh
Q 024447 80 EGIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQA 136 (267)
Q Consensus 80 ~~f~r~yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~ 136 (267)
.|.++.-.++ ....+++-| |.+.+..|+.++|...+.++-.
T Consensus 339 -~~~~al~~~p----------~~~~a~~~~-----g~a~~~~g~~~~A~~~~~~al~ 379 (457)
T 1kt0_A 339 -CCDKALGLDS----------ANEKGLYRR-----GEAQLLMNEFESAKGDFEKVLE 379 (457)
T ss_dssp -HHHHHHHHST----------TCHHHHHHH-----HHHHHHTTCHHHHHHHHHHHHT
T ss_pred -HHHHHHhcCC----------ccHHHHHHH-----HHHHHHccCHHHHHHHHHHHHH
Confidence 4444331121 223445444 8889999999999999887654
No 136
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=94.47 E-value=0.29 Score=44.09 Aligned_cols=96 Identities=22% Similarity=0.261 Sum_probs=66.5
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 024447 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIE 83 (267)
Q Consensus 4 ~~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~ 83 (267)
+-.+..+|..+++.|+|++|+.++-.|=+.. | | +..-..+..||+.+++ .++|..-+.++-+.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~----p-------~-~~~~~~la~~~~~~g~---~~~A~~~~~~al~~-- 68 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK----E-------D-PVFYSNLSACYVSVGD---LKKVVEMSTKALEL-- 68 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC----C-------C-HHHHHHHHHHHHHHTC---HHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC----c-------c-HHHHHhHHHHHHHHhh---HHHHHHHHHHHhcc--
Confidence 4568899999999999999999998886653 1 1 4566778899999876 44555544444321
Q ss_pred HHhCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHh
Q 024447 84 RAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQA 136 (267)
Q Consensus 84 r~yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~ 136 (267)
+| ..-.++ ...|.+.+..|+.++|...+.++-.
T Consensus 69 -----~p----------~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~ 101 (514)
T 2gw1_A 69 -----KP----------DYSKVL-----LRRASANEGLGKFADAMFDLSVLSL 101 (514)
T ss_dssp -----CS----------CCHHHH-----HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----Ch----------HHHHHH-----HHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 11 111223 3348888899999999988876543
No 137
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=94.44 E-value=0.34 Score=39.86 Aligned_cols=58 Identities=22% Similarity=0.268 Sum_probs=40.2
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHH
Q 024447 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRK 77 (267)
Q Consensus 6 ~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ 77 (267)
.+..+|..+++.++|++|+.++-.+=+.... .+-...-+.+||+.+++ .++|...+.+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-----------~~~~~~~l~~~~~~~~~---~~~A~~~~~~ 62 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-----------SPYIYNRRAVCYYELAK---YDLAQKDIET 62 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-----------CSTTHHHHHHHHHHTTC---HHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-----------cHHHHHHHHHHHHHHhh---HHHHHHHHHH
Confidence 4678999999999999999999888554332 22244557788988775 3444444333
No 138
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=94.40 E-value=0.61 Score=38.87 Aligned_cols=105 Identities=12% Similarity=0.029 Sum_probs=69.5
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q 024447 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIER 84 (267)
Q Consensus 5 ~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~r 84 (267)
-.++.+|..++++++|++|+.++-.+=+.+..- ...+-..+.+.+||+.+++ .++|...+.++-+.+-
T Consensus 16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~--------~~~~~a~~~lg~~~~~~~~---~~~A~~~~~~~l~~~p- 83 (261)
T 3qky_A 16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTH--------EWAADAQFYLARAYYQNKE---YLLAASEYERFIQIYQ- 83 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCS--------TTHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC--------cchHHHHHHHHHHHHHhCc---HHHHHHHHHHHHHHCC-
Confidence 457899999999999999999998876665321 1225566788999999875 4455544444332210
Q ss_pred HhCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhc--------cCCchhHhhhhHhhHhhhc
Q 024447 85 AHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYH--------SGQFDKARNALTSAQAKFF 139 (267)
Q Consensus 85 ~yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h--------~g~~d~A~~~l~~a~~~~~ 139 (267)
++.....+++.. |.+.+. .|+.++|...+.++-...+
T Consensus 84 -------------~~~~~~~a~~~l-----g~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 128 (261)
T 3qky_A 84 -------------IDPRVPQAEYER-----AMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYP 128 (261)
T ss_dssp -------------TCTTHHHHHHHH-----HHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCT
T ss_pred -------------CCchhHHHHHHH-----HHHHHHhcccccccchhHHHHHHHHHHHHHHCc
Confidence 111222334333 777777 8999999998887655544
No 139
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=94.28 E-value=0.63 Score=41.47 Aligned_cols=109 Identities=20% Similarity=0.165 Sum_probs=73.0
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCCh----hhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHH
Q 024447 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDP----KVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAR 79 (267)
Q Consensus 4 ~~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~----~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae 79 (267)
+..++..|..++++++|++|+..+-.|=+....... .-.+.-...+.....+.+||+.+++ ..+|...+.+|-
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~---~~~A~~~~~~al 223 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQA---FSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHH
Confidence 456788999999999999999999888776554421 1111122235677889999999875 344444444443
Q ss_pred HHHHHHhCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHhh
Q 024447 80 EGIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAK 137 (267)
Q Consensus 80 ~~f~r~yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~~ 137 (267)
+. ++ ..-.+++.+ |.+.+..|+.++|...+.++-..
T Consensus 224 ~~-------~p----------~~~~a~~~l-----g~~~~~~g~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 224 EL-------DS----------NNEKGLSRR-----GEAHLAVNDFELARADFQKVLQL 259 (336)
T ss_dssp HH-------CT----------TCHHHHHHH-----HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred Hh-------CC----------CcHHHHHHH-----HHHHHHCCCHHHHHHHHHHHHHH
Confidence 22 22 122344333 88899999999999999877554
No 140
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=94.21 E-value=0.52 Score=40.98 Aligned_cols=109 Identities=11% Similarity=-0.006 Sum_probs=63.5
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Q 024447 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERA 85 (267)
Q Consensus 6 ~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~r~ 85 (267)
.+..-|..+.+.++|++|+.++..|=+.|...+. .+..+.....|.++|.. ...+.|..-+.+|-+.+...
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~-----~~~~a~~~~~lg~~~~~----g~~~~A~~~~~~Al~~~~~~ 148 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGT-----PDTAAMALDRAGKLMEP----LDLSKAVHLYQQAAAVFENE 148 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTC-----HHHHHHHHHHHHHHHTT----TCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHhC
Confidence 4555666666677777777777776665544332 12334445566777743 56677777777776665542
Q ss_pred hCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHhhhc
Q 024447 86 HGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFF 139 (267)
Q Consensus 86 yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~~~~ 139 (267)
|... .....+.--|.+.+..|+.++|...+..+-...+
T Consensus 149 -~~~~---------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 186 (307)
T 2ifu_A 149 -ERLR---------------QAAELIGKASRLLVRQQKFDEAAASLQKEKSMYK 186 (307)
T ss_dssp -TCHH---------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred -CChh---------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 1110 0011122236677788999999988876654433
No 141
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=94.16 E-value=0.63 Score=32.26 Aligned_cols=98 Identities=9% Similarity=-0.079 Sum_probs=63.8
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q 024447 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIER 84 (267)
Q Consensus 5 ~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~r 84 (267)
-.++..|..+++.++|++|+.++-.|=+... +.+....-+..||+.+++ .++| ...|++
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-----------~~~~~~~~~a~~~~~~~~---~~~A-------~~~~~~ 65 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-----------EESKYWLMKGKALYNLER---YEEA-------VDCYNY 65 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-----------CCHHHHHHHHHHHHHTTC---HHHH-------HHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-----------CCHHHHHHHHHHHHHccC---HHHH-------HHHHHH
Confidence 4577889999999999999999987755432 223345677888888875 3444 444444
Q ss_pred HhCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhcc-CCchhHhhhhHhhHh
Q 024447 85 AHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHS-GQFDKARNALTSAQA 136 (267)
Q Consensus 85 ~yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~-g~~d~A~~~l~~a~~ 136 (267)
+.-.++. .....+ ...-+.+.+.. |+.++|...+..+-.
T Consensus 66 a~~~~~~--------~~~~~~-----~~~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 66 VINVIED--------EYNKDV-----WAAKADALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHHTSCC--------TTCHHH-----HHHHHHHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHhCcc--------cchHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 4322211 001122 23347888899 999999998876544
No 142
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=94.12 E-value=0.63 Score=37.86 Aligned_cols=97 Identities=18% Similarity=0.065 Sum_probs=64.4
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 024447 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIE 83 (267)
Q Consensus 4 ~~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~ 83 (267)
+-.++..|+.++..++|++|+.++..|=+.. .+.+.....+.+||+..++ .++|..-+.++-+.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-----------~~~~~~~~~la~~~~~~~~---~~~A~~~~~~a~~~-- 100 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-----------PSSADAHAALAVVFQTEME---PKLADEEYRKALAS-- 100 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-----------TTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-----------CChHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHH--
Confidence 3467889999999999999999998775542 2234556778899988764 45555555444332
Q ss_pred HHhCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHh
Q 024447 84 RAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQA 136 (267)
Q Consensus 84 r~yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~ 136 (267)
++ .. ...+..-+.+.+..|+.++|...+.++-.
T Consensus 101 -----~~---------~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 133 (252)
T 2ho1_A 101 -----DS---------RN------ARVLNNYGGFLYEQKRYEEAYQRLLEASQ 133 (252)
T ss_dssp -----CT---------TC------HHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred -----Cc---------Cc------HHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 11 01 11223346777788999999988876543
No 143
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=94.12 E-value=0.16 Score=48.21 Aligned_cols=106 Identities=13% Similarity=-0.007 Sum_probs=82.2
Q ss_pred hhHhHHHHHHhhchHHHHHHHHhh----hhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 024447 7 LHANAKSLIKRHMYKDALEVLTMG----EEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGI 82 (267)
Q Consensus 7 l~ek~r~~~~~~~y~~al~~ll~a----d~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f 82 (267)
..|+++..-+.++|++|+.++..| .+.|..=.+.++.+.+|.|.+-. +....++|.....++-..+
T Consensus 301 ~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~----------~~g~~~eA~~~~~~aL~i~ 370 (433)
T 3qww_A 301 VIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCL----------YMQDWEGALKYGQKIIKPY 370 (433)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHH----------HTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHH----------hhcCHHHHHHHHHHHHHHH
Confidence 345566555667899999987665 45677888999999999887642 3467899999999999999
Q ss_pred HHHhCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHh
Q 024447 83 ERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQA 136 (267)
Q Consensus 83 ~r~yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~ 136 (267)
++.||.++--+..... -| |.+.+++|+.++|..++.+|-+
T Consensus 371 ~~~lG~~Hp~~a~~l~------nL--------a~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 371 SKHYPVYSLNVASMWL------KL--------GRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHSCSSCHHHHHHHH------HH--------HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCCChHHHHHHH------HH--------HHHHHhccCHHHHHHHHHHHHH
Confidence 9999998877644322 12 6667899999999999987754
No 144
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=94.05 E-value=0.68 Score=34.97 Aligned_cols=127 Identities=14% Similarity=0.054 Sum_probs=78.3
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q 024447 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIER 84 (267)
Q Consensus 5 ~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~r 84 (267)
..+...|...++.++|++|+.++-.+-+... +.+....-+.++|+..++ .++|..-+.++-+.
T Consensus 43 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-----------~~~~~~~~~a~~~~~~~~---~~~A~~~~~~~~~~--- 105 (186)
T 3as5_A 43 DVALHLGIAYVKTGAVDRGTELLERSLADAP-----------DNVKVATVLGLTYVQVQK---YDLAVPLLIKVAEA--- 105 (186)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------TCHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----------CCHHHHHHHHHHHHHhcC---HHHHHHHHHHHHhc---
Confidence 3466789999999999999999987765521 223445667888888765 34444444443322
Q ss_pred HhCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHhhhccCCCChhhHhhHHhCCCCHHHHHHH
Q 024447 85 AHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRA 164 (267)
Q Consensus 85 ~yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~~~~~l~vd~~~l~~L~~MGF~~~~Ar~A 164 (267)
++. . .......|.+.+..|+.++|...+..+-... +.....+ ...|
T Consensus 106 ----~~~---------~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~---------~~la 151 (186)
T 3as5_A 106 ----NPI---------N------FNVRFRLGVALDNLGRFDEAIDSFKIALGLR------PNEGKVH---------RAIA 151 (186)
T ss_dssp ----CTT---------C------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHH---------HHHH
T ss_pred ----CcH---------h------HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC------ccchHHH---------HHHH
Confidence 110 1 1233445788889999999999988765432 1111111 1122
Q ss_pred -HHHhCCCHHHHHHHHHhh
Q 024447 165 -LRICSQDVGSAIDFLVEE 182 (267)
Q Consensus 165 -Lr~~~gdve~A~~wL~~~ 182 (267)
+....|+.+.|+.++..-
T Consensus 152 ~~~~~~~~~~~A~~~~~~~ 170 (186)
T 3as5_A 152 FSYEQMGRHEEALPHFKKA 170 (186)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 233468999999987443
No 145
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=93.97 E-value=1.8 Score=33.93 Aligned_cols=96 Identities=15% Similarity=0.032 Sum_probs=62.9
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q 024447 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIER 84 (267)
Q Consensus 5 ~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~r 84 (267)
..+...|..+++.++|++|+.++-.+-+... +.+.....+.+||+.+++ .++|..-+.++-+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~~~-- 72 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSDP-----------KNELAWLVRAEIYQYLKV---NDKAQESFRQALSIK-- 72 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------TCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-----------cchHHHHHHHHHHHHcCC---hHHHHHHHHHHHHhC--
Confidence 4567889999999999999999988766543 224455678899988765 455655555543321
Q ss_pred HhCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhcc-CCchhHhhhhHhhHh
Q 024447 85 AHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHS-GQFDKARNALTSAQA 136 (267)
Q Consensus 85 ~yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~-g~~d~A~~~l~~a~~ 136 (267)
.+ ..+ .+..-+.+.+.. |+.++|...+..+-.
T Consensus 73 ---~~-----------~~~------~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (225)
T 2vq2_A 73 ---PD-----------SAE------INNNYGWFLCGRLNRPAESMAYFDKALA 105 (225)
T ss_dssp ---TT-----------CHH------HHHHHHHHHHTTTCCHHHHHHHHHHHHT
T ss_pred ---CC-----------ChH------HHHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence 11 111 122236667788 888888888776544
No 146
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=93.93 E-value=0.62 Score=41.38 Aligned_cols=96 Identities=14% Similarity=0.090 Sum_probs=64.7
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q 024447 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIER 84 (267)
Q Consensus 5 ~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~r 84 (267)
-.+...|..+++.++|++|+.++-.+=+. .-+.+.....+.+||+.+++ .++|..-+.++-+.
T Consensus 27 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-----------~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~--- 89 (450)
T 2y4t_A 27 EKHLELGKKLLAAGQLADALSQFHAAVDG-----------DPDNYIAYYRRATVFLAMGK---SKAALPDLTKVIQL--- 89 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------CTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----------CCccHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhc---
Confidence 35678899999999999999999877543 22336667778999998875 45555544444322
Q ss_pred HhCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHh
Q 024447 85 AHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQA 136 (267)
Q Consensus 85 ~yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~ 136 (267)
++ .. ...+..-|.+.+..|+.++|...+..+-.
T Consensus 90 ----~p---------~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 122 (450)
T 2y4t_A 90 ----KM---------DF------TAARLQRGHLLLKQGKLDEAEDDFKKVLK 122 (450)
T ss_dssp ----CT---------TC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ----CC---------Cc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 11 11 11223347777788999999998876643
No 147
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=93.89 E-value=1.3 Score=36.94 Aligned_cols=133 Identities=13% Similarity=0.063 Sum_probs=70.0
Q ss_pred hhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHh
Q 024447 7 LHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERAH 86 (267)
Q Consensus 7 l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~r~y 86 (267)
+...|..+++.++|++|+.++-.|-+.+... +....-+.++|+.+++ ...|...|+++.
T Consensus 128 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-----------~~~~~~l~~~~~~~~~----------~~~A~~~~~~al 186 (330)
T 3hym_B 128 WIAYGHSFAVESEHDQAMAAYFTAAQLMKGC-----------HLPMLYIGLEYGLTNN----------SKLAERFFSQAL 186 (330)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTC-----------SHHHHHHHHHHHHTTC----------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhcccc-----------HHHHHHHHHHHHHHhh----------HHHHHHHHHHHH
Confidence 4556667777777777777776665544331 1122226777776654 234444555544
Q ss_pred CCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHhhhccCCCChhhHhhHHhCCCCHHHHHHHH-
Q 024447 87 GKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRAL- 165 (267)
Q Consensus 87 G~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~~~~~l~vd~~~l~~L~~MGF~~~~Ar~AL- 165 (267)
..++.- ......-|.+.+..|+.++|...+..+-...+...-... .-.++......|.
T Consensus 187 ~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------~~~~~~~~~~la~~ 245 (330)
T 3hym_B 187 SIAPED---------------PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVT------VDKWEPLLNNLGHV 245 (330)
T ss_dssp TTCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCT------TTTCCHHHHHHHHH
T ss_pred HhCCCC---------------hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccccc------ccHHHHHHHHHHHH
Confidence 333221 122334477788889999999888876554332211000 0111222222232
Q ss_pred HHhCCCHHHHHHHHHh
Q 024447 166 RICSQDVGSAIDFLVE 181 (267)
Q Consensus 166 r~~~gdve~A~~wL~~ 181 (267)
....|+.+.|+.++..
T Consensus 246 ~~~~g~~~~A~~~~~~ 261 (330)
T 3hym_B 246 CRKLKKYAEALDYHRQ 261 (330)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHH
Confidence 2336788888887643
No 148
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.84 E-value=0.064 Score=38.84 Aligned_cols=38 Identities=13% Similarity=0.267 Sum_probs=33.2
Q ss_pred CCHHHHHHHHhC--CCCHHHHHHHHHHcCCCHHHHHH-hcc
Q 024447 215 VDIEKIKELVSI--GFEKELVAEALRRNENDSQKALD-DLT 252 (267)
Q Consensus 215 vd~e~v~~L~~M--GF~~~~A~~ALr~t~ndve~Ald-lL~ 252 (267)
.-++.+.+|.+| -++++.++..|+.++||++.|++ +|.
T Consensus 17 ~~~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~ 57 (67)
T 2dhy_A 17 EFNQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQ 57 (67)
T ss_dssp CSHHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 456889999999 45789999999999999999999 553
No 149
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=93.79 E-value=0.061 Score=42.02 Aligned_cols=39 Identities=36% Similarity=0.599 Sum_probs=34.2
Q ss_pred CCCChhhHhhHHh-CCCCHHHHHHHHHHhCCCHHHHHHHH
Q 024447 141 LQVPDESLSLVMS-MGFKEQDAKRALRICSQDVGSAIDFL 179 (267)
Q Consensus 141 l~vd~~~l~~L~~-MGF~~~~Ar~ALr~~~gdve~A~~wL 179 (267)
..++++.|..+|+ .|-|+..|++||+.|+||+-.|+-+|
T Consensus 62 ~~i~~edi~lv~~q~~vs~~~A~~aL~~~~gDiv~Ai~~L 101 (102)
T 1tr8_A 62 MEIPEDDIELVMNQTGASREDATRALQETGGDLAEAIMRL 101 (102)
T ss_dssp CCCCHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHC
T ss_pred CCCCHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 5688899997765 79999999999999999999888765
No 150
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=93.57 E-value=0.96 Score=38.12 Aligned_cols=105 Identities=10% Similarity=0.024 Sum_probs=62.8
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q 024447 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIER 84 (267)
Q Consensus 5 ~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~r 84 (267)
..++..|..+++.++|++|+..+-.+=+.. .+.+....-+.+||+.+++ ...|...|++
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~ 96 (359)
T 3ieg_A 38 IAYYRRATVFLAMGKSKAALPDLTKVIALK-----------MDFTAARLQRGHLLLKQGK----------LDEAEDDFKK 96 (359)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----------TTCHHHHHHHHHHHHHHTC----------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----------CCcchHHHHHHHHHHHcCC----------hHHHHHHHHH
Confidence 356788999999999999999997775542 2334556778999998875 3455566666
Q ss_pred HhCCCH---HHHHHHH--cCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhH
Q 024447 85 AHGKDS---SRVRLLQ--AGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQ 135 (267)
Q Consensus 85 ~yG~~~---~rl~~lk--g~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~ 135 (267)
..-.++ .-..... |.. ...+-....+.+.+..|+.++|...+..+-
T Consensus 97 ~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 147 (359)
T 3ieg_A 97 VLKSNPSEQEEKEAESQLVKA-----DEMQRLRSQALDAFDGADYTAAITFLDKIL 147 (359)
T ss_dssp HHTSCCCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhcCCcccChHHHHHHHHHH-----HHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 654444 2221111 110 011222333555666666666666665543
No 151
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=93.54 E-value=0.082 Score=45.86 Aligned_cols=38 Identities=29% Similarity=0.277 Sum_probs=32.1
Q ss_pred hhHhhHHhC-CCCHHHHHHHHHHhCCCHHHHHHHHHhhh
Q 024447 146 ESLSLVMSM-GFKEQDAKRALRICSQDVGSAIDFLVEEK 183 (267)
Q Consensus 146 ~~l~~L~~M-GF~~~~Ar~ALr~~~gdve~A~~wL~~~~ 183 (267)
..|..|-++ |.+.-+|++||..|+||++.|++||-..-
T Consensus 5 ~~VKeLRe~TGagmmdCKkAL~e~~GD~ekAie~LR~kG 43 (196)
T 1aip_C 5 ELIKKLREATGAGMMDVKRALEDAGWDEEKAVQLLRERG 43 (196)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHcC
Confidence 346666665 89999999999999999999999997643
No 152
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=93.51 E-value=0.013 Score=51.32 Aligned_cols=37 Identities=30% Similarity=0.399 Sum_probs=0.0
Q ss_pred hhhHhhHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHh
Q 024447 145 DESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVE 181 (267)
Q Consensus 145 ~~~l~~L~~MGF~~~~Ar~ALr~~~gdve~A~~wL~~ 181 (267)
+++|..+++|||++..++.||..++.|++.|++.|++
T Consensus 178 ~~~v~~~~~mgf~~~~~~~al~~~~~~~~~~~~~l~~ 214 (216)
T 2pwq_A 178 EVIIKKITEMGFSEDQAKNALIKANWNETLALNTLLE 214 (216)
T ss_dssp -------------------------------------
T ss_pred hhHHHHHHHcCCCHHHHHHHHHHcCCchHHHHHHHhc
Confidence 5899999999999999999999999999999998865
No 153
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.46 E-value=0.2 Score=44.65 Aligned_cols=161 Identities=11% Similarity=0.090 Sum_probs=89.7
Q ss_pred hhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhh-hhccc-----hhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 024447 7 LHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVL-EFVDN-----GPLLQIDMVWCYFMLRDISWLSEAGIRLRKARE 80 (267)
Q Consensus 7 l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l-~~vDn-----~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~ 80 (267)
.-|.|+.+++.|+|++|+..+..+-+.......... ..+.. +.---.-|+-.|+..++. ++|..-+.++..
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~---~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAK---DKLREFIPHSTE 83 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCH---HHHHHHHHHTHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCH---HHHHHHHHHHHH
Confidence 458899999999999999999999887765544211 11111 111124568888888775 455555555544
Q ss_pred HHHHHhCCCH-HH-HHHHHcC-----Ccchh------------------hHHHHHHHHHHhhhhccCCchhHhhhhHhhH
Q 024447 81 GIERAHGKDS-SR-VRLLQAG-----RHPEL------------------ALHLRMELLEGVAAYHSGQFDKARNALTSAQ 135 (267)
Q Consensus 81 ~f~r~yG~~~-~r-l~~lkg~-----~~~E~------------------al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~ 135 (267)
.+.. .+... .+ +..+.|. ...+. .+..|++.--+-+.+..|+.++|...+..+.
T Consensus 84 ~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 162 (434)
T 4b4t_Q 84 YMMQ-FAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLL 162 (434)
T ss_dssp HHHT-SCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHH-ccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHH
Confidence 4332 11110 00 1111110 00011 1224555556788888999999999988776
Q ss_pred hhhccCCCChhhHhhHHhCCCCHHHHHHHHHHhCCCHHHHHHHH
Q 024447 136 AKFFQLQVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFL 179 (267)
Q Consensus 136 ~~~~~l~vd~~~l~~L~~MGF~~~~Ar~ALr~~~gdve~A~~wL 179 (267)
.......-.+..+..+...| -+...-||.++|..++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~A~~~~ 198 (434)
T 4b4t_Q 163 REFKKLDDKPSLVDVHLLES--------KVYHKLRNLAKSKASL 198 (434)
T ss_dssp HHHTTSSCSTHHHHHHHHHH--------HHHHHTTCHHHHHHHH
T ss_pred HHHHhcccchhHHHHHHHHH--------HHHHHhCcHHHHHHHH
Confidence 66555443444444333322 1223356666666655
No 154
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=93.43 E-value=1.4 Score=38.10 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=17.3
Q ss_pred HHHHhhhhccCCchhHhhhhHhhHh
Q 024447 112 LLEGVAAYHSGQFDKARNALTSAQA 136 (267)
Q Consensus 112 lLqg~v~~h~g~~d~A~~~l~~a~~ 136 (267)
..-|.+.+..|+.++|...+..+-.
T Consensus 217 ~~l~~~~~~~g~~~~A~~~~~~al~ 241 (365)
T 4eqf_A 217 TGLGVLFHLSGEFNRAIDAFNAALT 241 (365)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3346777777888888887776544
No 155
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=93.40 E-value=0.85 Score=39.52 Aligned_cols=95 Identities=9% Similarity=-0.109 Sum_probs=64.9
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Q 024447 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERA 85 (267)
Q Consensus 6 ~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~r~ 85 (267)
.++.+|..+++.++|++|+.++-.|=+... +.+.....+.+||+.+++ .+.|..-+.++-+.
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-----------~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~---- 128 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQDP-----------GDAEAWQFLGITQAENEN---EQAAIVALQRCLEL---- 128 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHCT-----------TCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-----------CCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhc----
Confidence 478899999999999999999988866532 234456778999998876 44444444444322
Q ss_pred hCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHh
Q 024447 86 HGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQA 136 (267)
Q Consensus 86 yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~ 136 (267)
++ ....+ +..-|.+.+..|+.++|...+.++-.
T Consensus 129 ---~p----------~~~~~-----~~~l~~~~~~~g~~~~A~~~~~~al~ 161 (365)
T 4eqf_A 129 ---QP----------NNLKA-----LMALAVSYTNTSHQQDACEALKNWIK 161 (365)
T ss_dssp ---CT----------TCHHH-----HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---CC----------CCHHH-----HHHHHHHHHccccHHHHHHHHHHHHH
Confidence 11 11112 22337778899999999998887644
No 156
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=93.31 E-value=0.41 Score=39.18 Aligned_cols=107 Identities=11% Similarity=-0.056 Sum_probs=61.5
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhh-----hhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 024447 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVL-----EFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKARE 80 (267)
Q Consensus 6 ~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l-----~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~ 80 (267)
.+..+|..+++.++|++|+.++-.|=+.......-.. ....-.+-+...+..||+.+++ .+ .|..
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~---~~-------~A~~ 75 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRN---YD-------KAYL 75 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTC---HH-------HHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCC---HH-------HHHH
Confidence 3678999999999999999999877443221100000 0001112223347788877654 33 4444
Q ss_pred HHHHHhCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHhh
Q 024447 81 GIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAK 137 (267)
Q Consensus 81 ~f~r~yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~~ 137 (267)
.|++..-.+|. .-.++ ..-|.+.+..|+.++|...+.++-+.
T Consensus 76 ~~~~al~~~p~----------~~~~~-----~~lg~~~~~~g~~~~A~~~~~~al~~ 117 (208)
T 3urz_A 76 FYKELLQKAPN----------NVDCL-----EACAEMQVCRGQEKDALRMYEKILQL 117 (208)
T ss_dssp HHHHHHHHCTT----------CHHHH-----HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCC----------CHHHH-----HHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 44443322221 11222 23388888899999999988866543
No 157
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=93.30 E-value=0.083 Score=48.36 Aligned_cols=38 Identities=26% Similarity=0.406 Sum_probs=32.7
Q ss_pred hhHhhHHhC-CCCHHHHHHHHHHhCCCHHHHHHHHHhhh
Q 024447 146 ESLSLVMSM-GFKEQDAKRALRICSQDVGSAIDFLVEEK 183 (267)
Q Consensus 146 ~~l~~L~~M-GF~~~~Ar~ALr~~~gdve~A~~wL~~~~ 183 (267)
..|..|-++ |.+.-.|++||..++||+++|++||....
T Consensus 6 ~~VKeLRe~TGagmmdCKKAL~e~~GD~ekAie~LR~~a 44 (291)
T 1xb2_B 6 ELLMKLRRKTGYSFINCKKALETCGGDLKQAESWLHKQA 44 (291)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 456677766 89999999999999999999999997643
No 158
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=93.20 E-value=1.3 Score=35.38 Aligned_cols=50 Identities=12% Similarity=0.017 Sum_probs=15.8
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCC
Q 024447 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRD 64 (267)
Q Consensus 4 ~~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~ 64 (267)
+..+..+|..+++.++|++|+.++-.+=+... +.+....-+.+||+.+++
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-----------~~~~~~~~la~~~~~~~~ 72 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK-----------EDAIPYINFANLLSSVNE 72 (243)
T ss_dssp -------------------CCTTHHHHHTTCT-----------TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-----------ccHHHHHHHHHHHHHcCC
Confidence 45566777777777777777777766644211 113344456666666554
No 159
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=93.17 E-value=1.5 Score=30.81 Aligned_cols=125 Identities=18% Similarity=0.099 Sum_probs=75.2
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Q 024447 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERA 85 (267)
Q Consensus 6 ~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~r~ 85 (267)
+++..|...++.++|++|+.++..+-+... +.+.....++.+|+..++ .++|..-+.++-+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----------~~~~~~~~~a~~~~~~~~---~~~A~~~~~~~~~~---- 64 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-----------RSAEAWYNLGNAYYKQGD---YDEAIEYYQKALEL---- 64 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-----------TCHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-----------cchhHHHHHHHHHHHhcC---HHHHHHHHHHHHHH----
Confidence 567789999999999999999988755421 112334457888887764 45555554444321
Q ss_pred hCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHhhhccCCCChhhHhhHHhCCCCHHHHHHH-
Q 024447 86 HGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRA- 164 (267)
Q Consensus 86 yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~~~~~l~vd~~~l~~L~~MGF~~~~Ar~A- 164 (267)
+.+ .+ ..+..-+.+.+..|+.++|...+..+-...+. +.. .+. ..|
T Consensus 65 -~~~-----------~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~---~~~---------~la~ 111 (136)
T 2fo7_A 65 -DPR-----------SA------EAWYNLGNAYYKQGDYDEAIEYYQKALELDPR---SAE---AWY---------NLGN 111 (136)
T ss_dssp -CTT-----------CH------HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT---CHH---HHH---------HHHH
T ss_pred -CCC-----------ch------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---ChH---HHH---------HHHH
Confidence 111 11 12233477778899999999988766443211 111 111 112
Q ss_pred HHHhCCCHHHHHHHHHh
Q 024447 165 LRICSQDVGSAIDFLVE 181 (267)
Q Consensus 165 Lr~~~gdve~A~~wL~~ 181 (267)
+....|+.+.|..++..
T Consensus 112 ~~~~~~~~~~A~~~~~~ 128 (136)
T 2fo7_A 112 AYYKQGDYDEAIEYYQK 128 (136)
T ss_dssp HHHTTTCHHHHHHHHHH
T ss_pred HHHHHccHHHHHHHHHH
Confidence 23346889999988743
No 160
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=93.12 E-value=0.017 Score=50.70 Aligned_cols=35 Identities=26% Similarity=0.387 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHhc
Q 024447 217 IEKIKELVSIGFEKELVAEALRRNENDSQKALDDL 251 (267)
Q Consensus 217 ~e~v~~L~~MGF~~~~A~~ALr~t~ndve~AldlL 251 (267)
.+.|+.+++|||+++.++.||...+.|+++|++.|
T Consensus 178 ~~~v~~~~~mgf~~~~~~~al~~~~~~~~~~~~~l 212 (216)
T 2pwq_A 178 EVIIKKITEMGFSEDQAKNALIKANWNETLALNTL 212 (216)
T ss_dssp -----------------------------------
T ss_pred hhHHHHHHHcCCCHHHHHHHHHHcCCchHHHHHHH
Confidence 57899999999999999999999999999999943
No 161
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.11 E-value=0.14 Score=36.98 Aligned_cols=41 Identities=20% Similarity=0.194 Sum_probs=34.8
Q ss_pred ChhhHhhHHhC--CCCHHHHHHHHHHhCCCHHHHHHHHHhhhh
Q 024447 144 PDESLSLVMSM--GFKEQDAKRALRICSQDVGSAIDFLVEEKA 184 (267)
Q Consensus 144 d~~~l~~L~~M--GF~~~~Ar~ALr~~~gdve~A~~wL~~~~~ 184 (267)
-++.+.+|.+| .++....+.+|++++||++.|++-|++...
T Consensus 18 ~~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~ms~ 60 (67)
T 2dhy_A 18 FNQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQMNL 60 (67)
T ss_dssp SHHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhcCC
Confidence 45789999999 346888999999999999999999987653
No 162
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=93.11 E-value=1.7 Score=34.75 Aligned_cols=60 Identities=18% Similarity=0.007 Sum_probs=40.1
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHH
Q 024447 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKA 78 (267)
Q Consensus 5 ~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~a 78 (267)
..+...|...++.++|++|+.++-.+=+... +.+.....+.+||+.+++ ...|..-+.++
T Consensus 58 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-----------~~~~~~~~la~~~~~~~~---~~~A~~~~~~~ 117 (243)
T 2q7f_A 58 IPYINFANLLSSVNELERALAFYDKALELDS-----------SAATAYYGAGNVYVVKEM---YKEAKDMFEKA 117 (243)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------TCHHHHHHHHHHHHHTTC---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----------cchHHHHHHHHHHHHhcc---HHHHHHHHHHH
Confidence 3456778888889999999988877655422 234556677888887664 44555544444
No 163
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=93.06 E-value=1 Score=35.05 Aligned_cols=96 Identities=16% Similarity=0.064 Sum_probs=62.6
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Q 024447 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERA 85 (267)
Q Consensus 6 ~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~r~ 85 (267)
.++..|..+++.++|++|+.++-.|=+. --+.+....-+.+||+.+++ .++| ...|++.
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~-----------~p~~~~~~~~lg~~~~~~g~---~~~A-------~~~~~~a 81 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVL-----------DHYDSRFFLGLGACRQAMGQ---YDLA-------IHSYSYG 81 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------CTTCHHHHHHHHHHHHHTTC---HHHH-------HHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc-----------CcccHHHHHHHHHHHHHHhh---HHHH-------HHHHHHH
Confidence 4678999999999999999998766432 12233444567888888765 3444 4444443
Q ss_pred hCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHhh
Q 024447 86 HGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAK 137 (267)
Q Consensus 86 yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~~ 137 (267)
.-.++ ..+ .+. .--|.+.+..|+.++|...+.++-..
T Consensus 82 l~l~p---------~~~-~~~-----~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 82 AVMDI---------XEP-RFP-----FHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHST---------TCT-HHH-----HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhcCC---------CCc-hHH-----HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 31111 111 122 22388899999999999998876554
No 164
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.03 E-value=1.8 Score=37.26 Aligned_cols=108 Identities=12% Similarity=0.005 Sum_probs=68.7
Q ss_pred hHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhC
Q 024447 8 HANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERAHG 87 (267)
Q Consensus 8 ~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~r~yG 87 (267)
..-|..+...++|++|+..+..|=+.+...+. ..+.+..-..+.+||..+++ .+.|...+.+|-+.+.+. |
T Consensus 41 ~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~~a~~~~~lg~~~~~~g~---~~~A~~~~~~Al~l~~~~-g 111 (292)
T 1qqe_A 41 VQAATIYRLRKELNLAGDSFLKAADYQKKAGN-----EDEAGNTYVEAYKCFKSGGN---SVNAVDSLENAIQIFTHR-G 111 (292)
T ss_dssp HHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHT-T
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC-----HHHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHHc-C
Confidence 34466677788888888888888666554432 12345566788999988764 677888888777766432 1
Q ss_pred CCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhcc-CCchhHhhhhHhhHhhhc
Q 024447 88 KDSSRVRLLQAGRHPELALHLRMELLEGVAAYHS-GQFDKARNALTSAQAKFF 139 (267)
Q Consensus 88 ~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~-g~~d~A~~~l~~a~~~~~ 139 (267)
........ +.--|.+.... |+.++|..++.++-...+
T Consensus 112 -----------~~~~~a~~----~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~ 149 (292)
T 1qqe_A 112 -----------QFRRGANF----KFELGEILENDLHDYAKAIDCYELAGEWYA 149 (292)
T ss_dssp -----------CHHHHHHH----HHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred -----------CHHHHHHH----HHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence 11111111 11225666676 999999999987755433
No 165
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=92.87 E-value=1.5 Score=40.65 Aligned_cols=60 Identities=20% Similarity=0.174 Sum_probs=32.4
Q ss_pred HHhhhhccCCchhHhhhhHhhHhhhccCCCChhh-HhhHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHh
Q 024447 114 EGVAAYHSGQFDKARNALTSAQAKFFQLQVPDES-LSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVE 181 (267)
Q Consensus 114 qg~v~~h~g~~d~A~~~l~~a~~~~~~l~vd~~~-l~~L~~MGF~~~~Ar~ALr~~~gdve~A~~wL~~ 181 (267)
-+.+.+..|+.++|...+.++-+..++...++.. ...+..+| -+....|+++.|+.++..
T Consensus 481 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~--------~~~~~~g~~~~A~~~~~~ 541 (597)
T 2xpi_A 481 LGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLG--------HAYRKLKMYDAAIDALNQ 541 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHH--------HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHH--------HHHHHhcCHHHHHHHHHH
Confidence 3566667777777777777665544433333332 22222222 112236788888876633
No 166
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=92.80 E-value=0.15 Score=39.75 Aligned_cols=38 Identities=21% Similarity=0.307 Sum_probs=32.7
Q ss_pred cCCHHHHHHHHh-CCCCHHHHHHHHHHcCCCHHHHHHhc
Q 024447 214 AVDIEKIKELVS-IGFEKELVAEALRRNENDSQKALDDL 251 (267)
Q Consensus 214 ~vd~e~v~~L~~-MGF~~~~A~~ALr~t~ndve~AldlL 251 (267)
.++++.|+.+++ .|-++..|++||+.++||+-.|+-.|
T Consensus 63 ~i~~edi~lv~~q~~vs~~~A~~aL~~~~gDiv~Ai~~L 101 (102)
T 1tr8_A 63 EIPEDDIELVMNQTGASREDATRALQETGGDLAEAIMRL 101 (102)
T ss_dssp CCCHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHC
T ss_pred CCCHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 367788888765 69999999999999999999998654
No 167
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=92.71 E-value=4.6 Score=35.05 Aligned_cols=111 Identities=8% Similarity=-0.069 Sum_probs=74.9
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 024447 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIE 83 (267)
Q Consensus 4 ~~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~ 83 (267)
+-.+.-+|..++.+++|++|+.++-.|=+.+..-++ .-++.....+.++|+...+ .++|...+.++.....
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~------~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~ 84 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWF------YSRIVATSVLGEVLHCKGE---LTRSLALMQQTEQMAR 84 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCH------HHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCch------hHHHHHHHHHHHHHHhcCc---HHHHHHHHHHHHHHHH
Confidence 344566788999999999999998887665432111 1234456677888988764 6788888888887766
Q ss_pred HHhCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHhhhc
Q 024447 84 RAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFF 139 (267)
Q Consensus 84 r~yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~~~~ 139 (267)
+. |..... .......|.+.+..|+.++|..++..+-+...
T Consensus 85 ~~-~~~~~~---------------~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~ 124 (373)
T 1hz4_A 85 QH-DVWHYA---------------LWSLIQQSEILFAQGFLQTAWETQEKAFQLIN 124 (373)
T ss_dssp HT-TCHHHH---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hc-CcHHHH---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 52 222111 12223347888899999999998887655433
No 168
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=92.70 E-value=0.24 Score=35.04 Aligned_cols=99 Identities=13% Similarity=0.109 Sum_probs=62.9
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 024447 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIE 83 (267)
Q Consensus 4 ~~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~ 83 (267)
+-.++..|..+++.++|++|+..+..|=+... +.+.....+..||+.+++ ...|...|+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-----------~~~~~~~~lg~~~~~~g~----------~~~A~~~~~ 62 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQP-----------QNPVGYSNKAMALIKLGE----------YTQAIQMCQ 62 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-----------TCHHHHHHHHHHHHHTTC----------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----------CCHHHHHHHHHHHHHhcC----------HHHHHHHHH
Confidence 34678899999999999999999987755422 234556788999998875 345555565
Q ss_pred HHhCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhH
Q 024447 84 RAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALT 132 (267)
Q Consensus 84 r~yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~ 132 (267)
++.-.++.- .....+...+...|.+....|+.+.|...+.
T Consensus 63 ~al~~~p~~---------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 63 QGLRYTSTA---------EHVAIRSKLQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHTSCSST---------TSHHHHHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHhCCCc---------cHHHHHHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence 555333321 1222233444445666666666666665544
No 169
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=92.64 E-value=3 Score=35.56 Aligned_cols=142 Identities=11% Similarity=0.026 Sum_probs=80.1
Q ss_pred hHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhCCC
Q 024447 10 NAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERAHGKD 89 (267)
Q Consensus 10 k~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~r~yG~~ 89 (267)
-|-..+.+++|++|+..+-.|=+.+..-+.. -..+.....|..||+.+++ .+.|...+.+|-+.++..-+ +
T Consensus 121 l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~-----~~~~~~~~~lg~~y~~~g~---~~~A~~~~~~al~~~~~~~~-~ 191 (293)
T 3u3w_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDV-----YQNLYIENAIANIYAENGY---LKKGIDLFEQILKQLEALHD-N 191 (293)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHTCCCCSCT-----THHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHSSC-C
T ss_pred HHHHHHcccCHHHHHHHHHHHHHHhcccccH-----HHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHhccc-c
Confidence 3444555567777777776666543322211 1123345678888888775 57788888887776655322 2
Q ss_pred HHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHhhhccCCCChhhHhhHHhCCCCHHHHHHHHHHhC
Q 024447 90 SSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRALRICS 169 (267)
Q Consensus 90 ~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~~~~~l~vd~~~l~~L~~MGF~~~~Ar~ALr~~~ 169 (267)
. ....+.+.--|++.+..|+.++|...+.++-+...+..........+..+|. +....+
T Consensus 192 ~--------------~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~-------~~~~~g 250 (293)
T 3u3w_A 192 E--------------EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGE-------CLRKLE 250 (293)
T ss_dssp H--------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHH-------HHHHTT
T ss_pred h--------------hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH-------HHHHhC
Confidence 2 2333344455888999999999999988775543333211111222222221 223333
Q ss_pred CCHHHHHHHHHh
Q 024447 170 QDVGSAIDFLVE 181 (267)
Q Consensus 170 gdve~A~~wL~~ 181 (267)
.+.+.|+.++..
T Consensus 251 ~~~~~A~~~~~~ 262 (293)
T 3u3w_A 251 YEEAEIEDAYKK 262 (293)
T ss_dssp CCHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 356777777643
No 170
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=92.62 E-value=2.4 Score=36.24 Aligned_cols=26 Identities=35% Similarity=0.390 Sum_probs=19.2
Q ss_pred HHHHHhhhhccCCchhHhhhhHhhHh
Q 024447 111 ELLEGVAAYHSGQFDKARNALTSAQA 136 (267)
Q Consensus 111 ~lLqg~v~~h~g~~d~A~~~l~~a~~ 136 (267)
+..-|.+.+..|+.++|...+..+-.
T Consensus 220 ~~~l~~~~~~~g~~~~A~~~~~~al~ 245 (368)
T 1fch_A 220 QCGLGVLFNLSGEYDKAVDCFTAALS 245 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33457778888999999888876644
No 171
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=92.47 E-value=1.1 Score=35.69 Aligned_cols=95 Identities=8% Similarity=-0.048 Sum_probs=66.1
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Q 024447 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERA 85 (267)
Q Consensus 6 ~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~r~ 85 (267)
.++..|..+++.|+|++|+.++-.|=+.. | +.+-.-..+..||+.+++ ...|..+|++.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~----P-------~~~~~~~~lg~~~~~~g~----------~~~Ai~~~~~a 96 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD----F-------YNVDYIMGLAAIYQIKEQ----------FQQAADLYAVA 96 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC----T-------TCHHHHHHHHHHHHHTTC----------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC----C-------CCHHHHHHHHHHHHHHcc----------HHHHHHHHHHH
Confidence 57889999999999999999998764432 2 344455667888888765 45566666665
Q ss_pred hCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHh
Q 024447 86 HGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQA 136 (267)
Q Consensus 86 yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~ 136 (267)
.-.+| ..++ +.+- -|.+.+..|+.++|...+.++-.
T Consensus 97 l~l~P---------~~~~-~~~~-----lg~~~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 97 FALGK---------NDYT-PVFH-----TGQCQLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHHSS---------SCCH-HHHH-----HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhhCC---------CCcH-HHHH-----HHHHHHHcCCHHHHHHHHHHHHH
Confidence 52222 1222 2322 38889999999999999887654
No 172
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=92.37 E-value=3.3 Score=33.64 Aligned_cols=97 Identities=13% Similarity=-0.013 Sum_probs=64.8
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q 024447 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIER 84 (267)
Q Consensus 5 ~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~r 84 (267)
-.++..|+..++.++|++|+.++-.|=+.+. +.+.....+.+||+.+++ .++|..-+.++-+.
T Consensus 44 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-----------~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~--- 106 (275)
T 1xnf_A 44 QLLYERGVLYDSLGLRALARNDFSQALAIRP-----------DMPEVFNYLGIYLTQAGN---FDAAYEAFDSVLEL--- 106 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-----------CCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-----------CcHHHHHHHHHHHHHccC---HHHHHHHHHHHHhc---
Confidence 4567789999999999999999887766532 234455678888888764 44555544444332
Q ss_pred HhCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHhh
Q 024447 85 AHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAK 137 (267)
Q Consensus 85 ~yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~~ 137 (267)
++ .. ...+...|.+.+..|+.++|...+.++-..
T Consensus 107 ----~~---------~~------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 140 (275)
T 1xnf_A 107 ----DP---------TY------NYAHLNRGIALYYGGRDKLAQDDLLAFYQD 140 (275)
T ss_dssp ----CT---------TC------THHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----Cc---------cc------cHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 11 11 122334478888999999999988876543
No 173
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=92.27 E-value=1.3 Score=35.05 Aligned_cols=112 Identities=10% Similarity=-0.072 Sum_probs=68.3
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q 024447 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIER 84 (267)
Q Consensus 5 ~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~r 84 (267)
-.++..|...++.++|++|+..+-.|=+.. .+.+.....+.+||+.+++ .++|..-+.++-+....
T Consensus 38 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----------~~~~~~~~~lg~~~~~~~~---~~~A~~~~~~al~~~~~ 103 (213)
T 1hh8_A 38 RICFNIGCMYTILKNMTEAEKAFTRSINRD-----------KHLAVAYFQRGMLYYQTEK---YDLAIKDLKEALIQLRG 103 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------TTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------ccchHHHHHHHHHHHHccc---HHHHHHHHHHHHHhCCC
Confidence 356778999999999999999998876543 2345566788999998765 45555554444332111
Q ss_pred HhCCCHHHHHHHHcC-CcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHhh
Q 024447 85 AHGKDSSRVRLLQAG-RHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAK 137 (267)
Q Consensus 85 ~yG~~~~rl~~lkg~-~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~~ 137 (267)
.-+.. ....|. ..+. ....+...|.+.+..|+.++|...+..+-..
T Consensus 104 ~~~~~----~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 104 NQLID----YKILGLQFKLF---ACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp CSEEE----CGGGTBCCEEE---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccHHH----HHHhccccCcc---chHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 00000 000000 1111 1123344588899999999999998866543
No 174
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=92.21 E-value=0.54 Score=44.33 Aligned_cols=104 Identities=16% Similarity=0.078 Sum_probs=80.0
Q ss_pred HhHHHHHHhhchHHHHHHHHhh----hhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q 024447 9 ANAKSLIKRHMYKDALEVLTMG----EEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIER 84 (267)
Q Consensus 9 ek~r~~~~~~~y~~al~~ll~a----d~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~r 84 (267)
..-..+-++++|++|+.+.-.+ .+.|..-.+.++.+.+|.|.+.. . .....+|.....++-..+++
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~-------~---~g~~~eA~~~~~~~L~i~~~ 361 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACI-------N---LGLLEEALFYGTRTMEPYRI 361 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHH-------H---HTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHH-------h---hccHHHHHHHHHHHHHhHHH
Confidence 3344566789999999988766 45678889999999999887643 2 35789999999999999999
Q ss_pred HhCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHh
Q 024447 85 AHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQA 136 (267)
Q Consensus 85 ~yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~ 136 (267)
.||.++--+....- . -|.+..++|+.++|..++.+|-+
T Consensus 362 ~lg~~Hp~~a~~l~----------n----La~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 362 FFPGSHPVRGVQVM----------K----VGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HSCSSCHHHHHHHH----------H----HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HcCCCChHHHHHHH----------H----HHHHHHhcCCHHHHHHHHHHHHH
Confidence 99988766533221 1 15567789999999999887754
No 175
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=92.20 E-value=0.9 Score=34.08 Aligned_cols=94 Identities=10% Similarity=-0.131 Sum_probs=63.0
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Q 024447 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERA 85 (267)
Q Consensus 6 ~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~r~ 85 (267)
.++++|..+++.++|++|+..+-.|=+.... .+-....+..||..+++ ...|...|++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-----------~~~a~~~lg~~~~~~g~----------~~~A~~~~~~a 77 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPE-----------REEAWRSLGLTQAENEK----------DGLAIIALNHA 77 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-----------CHHHHHHHHHHHHHTTC----------HHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-----------CHHHHHHHHHHHHHcCC----------HHHHHHHHHHH
Confidence 4678999999999999999998776543322 24445667888888765 44555666655
Q ss_pred hCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhH
Q 024447 86 HGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQ 135 (267)
Q Consensus 86 yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~ 135 (267)
.-.++. .++ +.+ .-|.+.+..|+.++|...+..+-
T Consensus 78 l~l~P~---------~~~-~~~-----~la~~~~~~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 78 RMLDPK---------DIA-VHA-----ALAVSHTNEHNANAALASLRAWL 112 (121)
T ss_dssp HHHCTT---------CHH-HHH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCC---------CHH-HHH-----HHHHHHHHcCCHHHHHHHHHHHH
Confidence 533332 111 222 23777778899999998887653
No 176
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=91.99 E-value=2.2 Score=29.76 Aligned_cols=97 Identities=21% Similarity=0.144 Sum_probs=63.7
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 024447 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIE 83 (267)
Q Consensus 4 ~~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~ 83 (267)
+-.++..|..+++.++|++|+.++..+-+... +.+.....++.||+..++ ..+|..-+.++-+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-----------~~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~-- 72 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-----------NNAEAWYNLGNAYYKQGD---YDEAIEYYQKALEL-- 72 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------TCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-----------CcHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHh--
Confidence 34678889999999999999999988866532 223455677888887654 45555554444321
Q ss_pred HHhCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHh
Q 024447 84 RAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQA 136 (267)
Q Consensus 84 r~yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~ 136 (267)
. .+ .+ .....-+.+.+..|+.++|...+..+-.
T Consensus 73 --~-~~-----------~~------~~~~~la~~~~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 73 --D-PN-----------NA------EAWYNLGNAYYKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp --C-TT-----------CH------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --C-Cc-----------cH------HHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 1 11 11 1122337777889999999988876544
No 177
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=91.94 E-value=0.12 Score=45.23 Aligned_cols=30 Identities=43% Similarity=0.586 Sum_probs=27.5
Q ss_pred CCHHHHHHHHhCCCCHHHHHHHHHHcCCCH
Q 024447 215 VDIEKIKELVSIGFEKELVAEALRRNENDS 244 (267)
Q Consensus 215 vd~e~v~~L~~MGF~~~~A~~ALr~t~ndv 244 (267)
.+.+.|+.+++|||+++.|+.||...+.|-
T Consensus 168 ~~~~~v~~~~~mg~~~~~~~~al~~~~~~~ 197 (215)
T 1tte_A 168 IDHDLIDEFESQGFEKDKIVEVLRRLGVKS 197 (215)
T ss_dssp CSHHHHHHHHHHTCCHHHHHHHHHHSCCSS
T ss_pred ccHHHHHHHHHcCCCHHHHHHHHHHcCCCc
Confidence 468899999999999999999999998875
No 178
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=91.54 E-value=0.24 Score=32.29 Aligned_cols=36 Identities=25% Similarity=0.242 Sum_probs=28.9
Q ss_pred HHHHHHhC-CCCHHHHHHHHHHcCCCHHHHHH-hccCC
Q 024447 219 KIKELVSI-GFEKELVAEALRRNENDSQKALD-DLTNP 254 (267)
Q Consensus 219 ~v~~L~~M-GF~~~~A~~ALr~t~ndve~Ald-lL~~p 254 (267)
.|.+.++. |-++..|+.-|..+++|++.|++ ++.+|
T Consensus 8 ~i~~F~~iTg~~~~~A~~~L~~~~wdle~Ai~~ff~~~ 45 (46)
T 1v92_A 8 ALREFVAVTGAEEDRARFFLESAGWDLQIALASFYEDG 45 (46)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHHHHHTC
T ss_pred HHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHHHHcCC
Confidence 35555543 78999999999999999999999 55555
No 179
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=91.53 E-value=3.6 Score=36.75 Aligned_cols=76 Identities=18% Similarity=0.162 Sum_probs=53.8
Q ss_pred hhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHh
Q 024447 7 LHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERAH 86 (267)
Q Consensus 7 l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~r~y 86 (267)
+.--|.....+|+|++|+..+-.|-+.+..-... +.--++++.--.+.|+|+.+.+ .++|...+.++.+..++..
T Consensus 54 yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~--~~~~~~~~~~~nla~~y~~~g~---~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 54 CNLLAYLKHLKGQNEAALECLRKAEELIQQEHAD--QAEIRSLVTWGNYAWVYYHMGR---LSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGG--GCTTTTHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCcc--ccchHHHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHhHhcc
Confidence 3345777788899999999999998776543221 1111334445578999998764 7889999999888877654
Q ss_pred C
Q 024447 87 G 87 (267)
Q Consensus 87 G 87 (267)
|
T Consensus 129 ~ 129 (472)
T 4g1t_A 129 S 129 (472)
T ss_dssp C
T ss_pred c
Confidence 3
No 180
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=91.52 E-value=4.6 Score=32.51 Aligned_cols=125 Identities=11% Similarity=-0.077 Sum_probs=78.3
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Q 024447 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERA 85 (267)
Q Consensus 6 ~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~r~ 85 (267)
.+...|....+.++|++|+.++-.|-+... +.+.....+++||+..++ ...|...|++.
T Consensus 73 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-----------~~~~~~~~la~~~~~~g~----------~~~A~~~~~~~ 131 (252)
T 2ho1_A 73 AHAALAVVFQTEMEPKLADEEYRKALASDS-----------RNARVLNNYGGFLYEQKR----------YEEAYQRLLEA 131 (252)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------TCHHHHHHHHHHHHHTTC----------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-----------CcHHHHHHHHHHHHHHhH----------HHHHHHHHHHH
Confidence 456678999999999999999988866532 234556778999988765 34455555555
Q ss_pred hC--CCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHhhhccCCCChhhHhhHHhCCCCHHHHHH
Q 024447 86 HG--KDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKR 163 (267)
Q Consensus 86 yG--~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~~~~~l~vd~~~l~~L~~MGF~~~~Ar~ 163 (267)
.. .++. . ...+..-+.+.+..|+.++|...+..+-...+. +... + ...
T Consensus 132 ~~~~~~~~------------~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~---~---------~~l 181 (252)
T 2ho1_A 132 SQDTLYPE------------R---SRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN---QPSV---A---------LEM 181 (252)
T ss_dssp TTCTTCTT------------H---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC---CHHH---H---------HHH
T ss_pred HhCccCcc------------c---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc---cHHH---H---------HHH
Confidence 42 2221 1 112233477788899999999998866543211 1111 1 112
Q ss_pred H-HHHhCCCHHHHHHHHHh
Q 024447 164 A-LRICSQDVGSAIDFLVE 181 (267)
Q Consensus 164 A-Lr~~~gdve~A~~wL~~ 181 (267)
| +....|+.+.|+.++..
T Consensus 182 a~~~~~~g~~~~A~~~~~~ 200 (252)
T 2ho1_A 182 ADLLYKEREYVPARQYYDL 200 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHH
Confidence 2 12336788888887744
No 181
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=91.46 E-value=0.12 Score=45.10 Aligned_cols=31 Identities=16% Similarity=0.225 Sum_probs=27.7
Q ss_pred CCChhhHhhHHhCCCCHHHHHHHHHHhCCCH
Q 024447 142 QVPDESLSLVMSMGFKEQDAKRALRICSQDV 172 (267)
Q Consensus 142 ~vd~~~l~~L~~MGF~~~~Ar~ALr~~~gdv 172 (267)
-.+.++|..+++|||++..|+.||..+|+|-
T Consensus 167 g~~~~~v~~~~~mg~~~~~~~~al~~~~~~~ 197 (215)
T 1tte_A 167 GIDHDLIDEFESQGFEKDKIVEVLRRLGVKS 197 (215)
T ss_dssp CCSHHHHHHHHHHTCCHHHHHHHHHHSCCSS
T ss_pred cccHHHHHHHHHcCCCHHHHHHHHHHcCCCc
Confidence 3578899999999999999999999998763
No 182
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=91.45 E-value=2.4 Score=36.18 Aligned_cols=111 Identities=11% Similarity=0.002 Sum_probs=75.5
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 024447 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIE 83 (267)
Q Consensus 4 ~~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~ 83 (267)
+..++..|....+.++|++|+.++..|=+.+...+..- ...+.....+.|||+.+++ .++|...+++|-+...
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~----~~~~~~~~nlg~~y~~~~~---y~~Al~~~~kal~~~~ 227 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNE----EFDVKVRYNHAKALYLDSR---YEESLYQVNKAIEISC 227 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH----HHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccc----cchHHHHHhHHHHHHHHhh---HHHHHHHHHHHHHHHH
Confidence 44677889999999999999999999987665443210 0012456688999998765 5677777777766552
Q ss_pred HHhCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhH-hhhhHhhHhh
Q 024447 84 RAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKA-RNALTSAQAK 137 (267)
Q Consensus 84 r~yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A-~~~l~~a~~~ 137 (267)
. . +... ....++...|.+.+..|+.++| ..++.+|-.-
T Consensus 228 ~-~------------~~~~---~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 228 R-I------------NSMA---LIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp H-T------------TBCS---SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred h-c------------CcHH---HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 2 1 1111 1233455678899999999999 7778766543
No 183
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=91.44 E-value=1.6 Score=38.74 Aligned_cols=95 Identities=14% Similarity=0.051 Sum_probs=63.9
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Q 024447 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERA 85 (267)
Q Consensus 6 ~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~r~ 85 (267)
.+..+|..+++.++|++|+.++-.+-+... +.+....-++.||..+++. ++|..-+.++-+..
T Consensus 145 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~--- 207 (450)
T 2y4t_A 145 RLRSQALNAFGSGDYTAAIAFLDKILEVCV-----------WDAELRELRAECFIKEGEP---RKAISDLKAASKLK--- 207 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-----------TCHHHHHHHHHHHHHTTCG---GGGHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----------CChHHHHHHHHHHHHCCCH---HHHHHHHHHHHHhC---
Confidence 467789999999999999999988765432 2445567789999998875 34444444333221
Q ss_pred hCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHh
Q 024447 86 HGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQA 136 (267)
Q Consensus 86 yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~ 136 (267)
...+ ..+..-+.+.+..|+.++|...+..+-.
T Consensus 208 -------------~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 239 (450)
T 2y4t_A 208 -------------NDNT------EAFYKISTLYYQLGDHELSLSEVRECLK 239 (450)
T ss_dssp -------------CSCH------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------------CCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1111 1223347778888999999998886643
No 184
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=91.33 E-value=5.1 Score=32.63 Aligned_cols=52 Identities=25% Similarity=0.143 Sum_probs=31.7
Q ss_pred HHHhhhhccCCchhHhhhhHhhHhhhccCCCChhhHhhHHhCCCCHHHHHHH-HHHhCCCHHHHHHHHH
Q 024447 113 LEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRA-LRICSQDVGSAIDFLV 180 (267)
Q Consensus 113 Lqg~v~~h~g~~d~A~~~l~~a~~~~~~l~vd~~~l~~L~~MGF~~~~Ar~A-Lr~~~gdve~A~~wL~ 180 (267)
.-|.+.+..|+.++|...+.++-+.. -+++... ..| +....|+.+.|+.++.
T Consensus 123 ~lg~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~------------~la~~~~~~g~~~~A~~~~~ 175 (217)
T 2pl2_A 123 QRGLVYALLGERDKAEASLKQALALE----DTPEIRS------------ALAELYLSMGRLDEALAQYA 175 (217)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC----CCHHHHH------------HHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhcc----cchHHHH------------HHHHHHHHcCCHHHHHHHHH
Confidence 34888888999999988887664431 1222221 222 1233578888888763
No 185
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=91.09 E-value=2.8 Score=34.25 Aligned_cols=59 Identities=14% Similarity=0.015 Sum_probs=40.2
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHH
Q 024447 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKA 78 (267)
Q Consensus 6 ~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~a 78 (267)
.++..|..+++.++|++|+..+-.|=+. +| +.+-...-+.+||+.+++ .++|..-+.++
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p-------~~~~a~~~lg~~~~~~g~---~~~A~~~~~~a 65 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERALKE----NP-------QDPEALYWLARTQLKLGL---VNPALENGKTL 65 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTT----SS-------SCHHHHHHHHHHHHHTTC---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh----CC-------CCHHHHHHHHHHHHHcCC---HHHHHHHHHHH
Confidence 5678999999999999999998766432 22 334445667788888765 34444444433
No 186
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=91.02 E-value=2.3 Score=34.25 Aligned_cols=101 Identities=16% Similarity=0.087 Sum_probs=65.6
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Q 024447 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERA 85 (267)
Q Consensus 6 ~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~r~ 85 (267)
.++..|...++.++|++|+..+-.|=+.. .+.+-...-+.+||+.+++ ..+|..-+.++-+..
T Consensus 44 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~-----------p~~~~~~~~l~~~~~~~~~---~~~A~~~~~~al~~~--- 106 (228)
T 4i17_A 44 TAYNCGVCADNIKKYKEAADYFDIAIKKN-----------YNLANAYIGKSAAYRDMKN---NQEYIATLTEGIKAV--- 106 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT-----------CSHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHS---
T ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHhC-----------cchHHHHHHHHHHHHHccc---HHHHHHHHHHHHHHC---
Confidence 34558999999999999999988775432 2345566778999998875 344444444443221
Q ss_pred hCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhH
Q 024447 86 HGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQ 135 (267)
Q Consensus 86 yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~ 135 (267)
..++ .+ .......+...|.+.+..|+.++|...+.++-
T Consensus 107 -p~~~-~~----------~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 144 (228)
T 4i17_A 107 -PGNA-TI----------EKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT 144 (228)
T ss_dssp -TTCH-HH----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred -CCcH-HH----------HHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH
Confidence 1111 11 11122345556888999999999999888654
No 187
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=90.85 E-value=1.8 Score=37.27 Aligned_cols=98 Identities=16% Similarity=0.167 Sum_probs=68.9
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 024447 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIE 83 (267)
Q Consensus 4 ~~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~ 83 (267)
+-.+...|..+++.++|++|+.++-.|=+... +.+.+...+.-||+.+++ ...|...|+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-----------~~~~~~~~la~~~~~~~~----------~~~A~~~~~ 62 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNP-----------LVAVYYTNRALCYLKMQQ----------PEQALADCR 62 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-----------CCHHHHHHHHHHHHHTTC----------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHHHHHhcC----------HHHHHHHHH
Confidence 45678999999999999999999987755422 245566778889998775 344555555
Q ss_pred HHhCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHhh
Q 024447 84 RAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAK 137 (267)
Q Consensus 84 r~yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~~ 137 (267)
+..-.++. .-.++ ..-|.+.+..|+.++|...+..+-..
T Consensus 63 ~al~~~p~----------~~~~~-----~~lg~~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 63 RALELDGQ----------SVKAH-----FFLGQCQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHTTSCTT----------CHHHH-----HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCC----------CHHHH-----HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55533331 11233 33488899999999999988876544
No 188
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=90.52 E-value=2.2 Score=35.56 Aligned_cols=104 Identities=17% Similarity=0.068 Sum_probs=68.5
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Q 024447 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERA 85 (267)
Q Consensus 6 ~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~r~ 85 (267)
.++..|...++.++|++|+.++-.|-+.+...+... ..++++....-+.+||..+++ .++|...+.++-+.
T Consensus 195 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~---- 265 (330)
T 3hym_B 195 VMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEV--TVDKWEPLLNNLGHVCRKLKK---YAEALDYHRQALVL---- 265 (330)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSC--TTTTCCHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccc--cccHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHhh----
Confidence 456778888899999999998888877665443321 224556677788999998775 45555555444432
Q ss_pred hCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHh
Q 024447 86 HGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQA 136 (267)
Q Consensus 86 yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~ 136 (267)
++ ..++ .+..-|.+.+..|+.++|...+..+-+
T Consensus 266 ---~~---------~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 266 ---IP---------QNAS------TYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp ---ST---------TCSH------HHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred ---Cc---------cchH------HHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 11 1111 122347888899999999998885543
No 189
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=90.41 E-value=1.2 Score=41.86 Aligned_cols=86 Identities=22% Similarity=0.107 Sum_probs=70.1
Q ss_pred hhhhhhHhHHHHHHhhchHHHHHHHHhhhh----hhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHH
Q 024447 3 MGLMLHANAKSLIKRHMYKDALEVLTMGEE----AFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKA 78 (267)
Q Consensus 3 ~~~~l~ek~r~~~~~~~y~~al~~ll~ad~----~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~a 78 (267)
++-++.--|.+...+|+|++|+.+...|=+ .+..=.|.+..+..|.|.+..+ ....++|..-+.+|
T Consensus 328 ~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~----------~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 328 QLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLH----------QGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHH----------TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHh----------cCCHHHHHHHHHHH
Confidence 345677778899999999999999887754 4556667888888888776554 45689999999999
Q ss_pred HHHHHHHhCCCHHHHHHHHc
Q 024447 79 REGIERAHGKDSSRVRLLQA 98 (267)
Q Consensus 79 e~~f~r~yG~~~~rl~~lkg 98 (267)
-+.+++.||.++-.+..+..
T Consensus 398 l~i~~~~lG~~Hp~~~~~~~ 417 (429)
T 3qwp_A 398 FDIMRVTHGREHSLIEDLIL 417 (429)
T ss_dssp HHHHHHHTCTTSHHHHHHHH
T ss_pred HHHHHHhcCCCChHHHHHHH
Confidence 99999999999988877763
No 190
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=90.09 E-value=3.4 Score=38.90 Aligned_cols=97 Identities=16% Similarity=0.087 Sum_probs=66.1
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q 024447 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIER 84 (267)
Q Consensus 5 ~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~r 84 (267)
-.++..|..+++.++|++|+..+-.|=+... +.+-....+.+||+.+++ .++|...+.+|-+.
T Consensus 24 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----------~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~--- 86 (568)
T 2vsy_A 24 VAWLMLADAELGMGDTTAGEMAVQRGLALHP-----------GHPEAVARLGRVRWTQQR---HAEAAVLLQQASDA--- 86 (568)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-----------TCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----------CCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhc---
Confidence 3567889999999999999999988765422 234456778899998865 45555555544432
Q ss_pred HhCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHhh
Q 024447 85 AHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAK 137 (267)
Q Consensus 85 ~yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~~ 137 (267)
++. ... .+..-|.+.+..|+.++|...+.++-+.
T Consensus 87 ----~p~----------~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~ 120 (568)
T 2vsy_A 87 ----APE----------HPG-----IALWLGHALEDAGQAEAAAAAYTRAHQL 120 (568)
T ss_dssp ----CTT----------CHH-----HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----CCC----------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 111 111 2233477888999999999998876554
No 191
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=90.04 E-value=2.2 Score=37.29 Aligned_cols=49 Identities=12% Similarity=0.048 Sum_probs=27.2
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCC
Q 024447 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDI 65 (267)
Q Consensus 6 ~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~ 65 (267)
.++..|....+.++|++|+.++-.|=+. +| +.+-...-+.++|+..++.
T Consensus 69 ~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p-------~~~~~~~~l~~~~~~~g~~ 117 (388)
T 1w3b_A 69 AYSNLGNVYKERGQLQEAIEHYRHALRL----KP-------DFIDGYINLAAALVAAGDM 117 (388)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH----CT-------TCHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHc----Cc-------chHHHHHHHHHHHHHcCCH
Confidence 3556666777777777777766655332 12 1122233456666666654
No 192
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=90.04 E-value=2.8 Score=36.24 Aligned_cols=108 Identities=16% Similarity=0.012 Sum_probs=67.0
Q ss_pred hhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHh
Q 024447 7 LHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERAH 86 (267)
Q Consensus 7 l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~r~y 86 (267)
+..-|..+...++|++|+..+..|=+.+...+. ....+..-..+..||..+++ .++|...+.+|-+.+.+.
T Consensus 39 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~~a~~~~~lg~~~~~~g~---~~~A~~~~~~Al~l~~~~- 109 (307)
T 2ifu_A 39 YAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRS-----LFHAAKAFEQAGMMLKDLQR---MPEAVQYIEKASVMYVEN- 109 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHHHHTTC---GGGGHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHHHHc-
Confidence 334467777888888888888888776654432 22345556677888887765 466777777777766431
Q ss_pred CCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHhhhc
Q 024447 87 GKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFF 139 (267)
Q Consensus 87 G~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~~~~ 139 (267)
| ++. .....+.. -|.+... |+.++|..++.++-+..+
T Consensus 110 g-~~~----------~~a~~~~~----lg~~~~~-g~~~~A~~~~~~Al~~~~ 146 (307)
T 2ifu_A 110 G-TPD----------TAAMALDR----AGKLMEP-LDLSKAVHLYQQAAAVFE 146 (307)
T ss_dssp T-CHH----------HHHHHHHH----HHHHHTT-TCHHHHHHHHHHHHHHHH
T ss_pred C-CHH----------HHHHHHHH----HHHHHHc-CCHHHHHHHHHHHHHHHH
Confidence 1 111 11111111 2555555 999999999887755443
No 193
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=89.71 E-value=0.71 Score=41.28 Aligned_cols=108 Identities=20% Similarity=0.162 Sum_probs=66.1
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCC-----hhhhhhccc-hhhhhhhHHHHHHHhCCCCCHHHHHHHHHH
Q 024447 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCD-----PKVLEFVDN-GPLLQIDMVWCYFMLRDISWLSEAGIRLRK 77 (267)
Q Consensus 4 ~~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~-----~~~l~~vDn-~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ 77 (267)
+-.++.+|..++++++|++|+..+..|=+...... .+.-+...- ..-+.+.+..||+.+++. .+|...+.+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~---~~A~~~~~~ 255 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRY---DEAIGHCNI 255 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCC---HHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCH---HHHHHHHHH
Confidence 45678899999999999999999887654332110 000000000 001456778899888764 455444444
Q ss_pred HHHHHHHHhCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHh
Q 024447 78 AREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQA 136 (267)
Q Consensus 78 ae~~f~r~yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~ 136 (267)
|-+. ......+++-+ |.+.+..|+.++|...+..+-.
T Consensus 256 al~~-----------------~p~~~~a~~~l-----g~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 256 VLTE-----------------EEKNPKALFRR-----GKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp HHHH-----------------CTTCHHHHHHH-----HHHHHTTTCHHHHHHHHHHTTC
T ss_pred HHHh-----------------CCCCHHHHHHH-----HHHHHHcCCHHHHHHHHHHHHH
Confidence 4321 11223344444 8888999999999998886543
No 194
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=89.63 E-value=1.3 Score=36.87 Aligned_cols=121 Identities=11% Similarity=0.035 Sum_probs=71.9
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhC-----CCCCHHHHHHHHHHHH
Q 024447 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLR-----DISWLSEAGIRLRKAR 79 (267)
Q Consensus 5 ~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~-----~~~~l~dA~~rL~~ae 79 (267)
-.++..|...++.++|++|+..+-.+=+.+..- .+++-...-+..||+.+. +....++|..-+.++-
T Consensus 53 ~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~--------~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l 124 (261)
T 3qky_A 53 DAQFYLARAYYQNKEYLLAASEYERFIQIYQID--------PRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFI 124 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------TTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCC--------chhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHH
Confidence 456788999999999999999998776655322 133444566788898843 3455566666555554
Q ss_pred HHHHHHhCC--CHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHhhhcc
Q 024447 80 EGIERAHGK--DSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQ 140 (267)
Q Consensus 80 ~~f~r~yG~--~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~~~~~ 140 (267)
+.+-.+--. -..++..+.+.. .. -+..-|.+.+..|+.++|...+..+-...+.
T Consensus 125 ~~~p~~~~~~~a~~~~~~~~~~~--~~-----~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 180 (261)
T 3qky_A 125 DRYPNHELVDDATQKIRELRAKL--AR-----KQYEAARLYERRELYEAAAVTYEAVFDAYPD 180 (261)
T ss_dssp HHCTTCTTHHHHHHHHHHHHHHH--HH-----HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHCcCchhHHHHHHHHHHHHHHH--HH-----HHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 432111000 001111111110 00 1234488899999999999999877555443
No 195
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=89.45 E-value=1.6 Score=41.38 Aligned_cols=86 Identities=17% Similarity=0.099 Sum_probs=70.6
Q ss_pred hhhhhhHhHHHHHHhhchHHHHHHHHhh----hhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHH
Q 024447 3 MGLMLHANAKSLIKRHMYKDALEVLTMG----EEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKA 78 (267)
Q Consensus 3 ~~~~l~ek~r~~~~~~~y~~al~~ll~a----d~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~a 78 (267)
++-++.--|.....+|+|++|+.+...| .+.+..=.|.+..+..|.|.+.. . ....++|..-+.+|
T Consensus 339 ~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~-------~---qg~~~eA~~~~~~A 408 (433)
T 3qww_A 339 MLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYM-------G---LENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHH-------H---TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH-------h---ccCHHHHHHHHHHH
Confidence 3456677788899999999999998776 45667778889888888887743 3 34679999999999
Q ss_pred HHHHHHHhCCCHHHHHHHHc
Q 024447 79 REGIERAHGKDSSRVRLLQA 98 (267)
Q Consensus 79 e~~f~r~yG~~~~rl~~lkg 98 (267)
-+.+++.||.++-.+..++.
T Consensus 409 l~i~~~~lG~~Hp~~~~l~~ 428 (433)
T 3qww_A 409 IAIMEVAHGKDHPYISEIKQ 428 (433)
T ss_dssp HHHHHHHTCTTCHHHHHHHH
T ss_pred HHHHHHHcCCCChHHHHHHH
Confidence 99999999999988877664
No 196
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=89.42 E-value=3.2 Score=35.36 Aligned_cols=110 Identities=11% Similarity=0.001 Sum_probs=78.1
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q 024447 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIER 84 (267)
Q Consensus 5 ~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~r 84 (267)
..+.--|....+.++|++|+.++-.|=+.+..-.. .-.+++.+...|.|||+.+++ .++|...+.+|-+....
T Consensus 156 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~nlg~~y~~~~~---y~~A~~~~~~al~~~~~ 228 (293)
T 3u3w_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHD----NEEFDVKVRYNHAKALYLDSR---YEESLYQVNKAIEISCR 228 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC----CHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc----chhHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHH
Confidence 35777899999999999999999999877654311 223556677889999999875 57787777777665543
Q ss_pred HhCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCc-hhHhhhhHhhHhh
Q 024447 85 AHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQF-DKARNALTSAQAK 137 (267)
Q Consensus 85 ~yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~-d~A~~~l~~a~~~ 137 (267)
.. ... ....++..-|.+.+..|+. ++|...+.+|-.-
T Consensus 229 ~~------------~~~----~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 229 IN------------SMA----LIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp TT------------BCT----THHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred cC------------cHH----HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 21 111 1133455568899999964 9999988877543
No 197
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=89.37 E-value=3.8 Score=31.63 Aligned_cols=28 Identities=21% Similarity=0.097 Sum_probs=21.4
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhh
Q 024447 6 MLHANAKSLIKRHMYKDALEVLTMGEEA 33 (267)
Q Consensus 6 ~l~ek~r~~~~~~~y~~al~~ll~ad~~ 33 (267)
.++..|...++.++|++|+..+..+-+.
T Consensus 41 ~~~~la~~~~~~~~~~~a~~~~~~~~~~ 68 (184)
T 3vtx_A 41 TLLKLGKTYMDIGLPNDAIESLKKFVVL 68 (184)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 4567788888888888888888766543
No 198
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=89.36 E-value=8.2 Score=31.86 Aligned_cols=57 Identities=14% Similarity=0.063 Sum_probs=39.4
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHH----hCCCCCHHHHHHHHHHH
Q 024447 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFM----LRDISWLSEAGIRLRKA 78 (267)
Q Consensus 6 ~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~----l~~~~~l~dA~~rL~~a 78 (267)
.++..|...++.++|++|+.++..|=+ -+.+.....+..+|+. .++ .+.|..-+.+|
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a~~-------------~~~~~a~~~lg~~~~~g~~~~~~---~~~A~~~~~~a 68 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKACD-------------LKENSGCFNLGVLYYQGQGVEKN---LKKAASFYAKA 68 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHTSSSCCC---HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH-------------CCCHHHHHHHHHHHHcCCCcCCC---HHHHHHHHHHH
Confidence 567889999999999999999988865 1223345667888887 443 44454444444
No 199
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=89.28 E-value=9.5 Score=32.51 Aligned_cols=147 Identities=12% Similarity=0.011 Sum_probs=87.9
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 024447 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIE 83 (267)
Q Consensus 4 ~~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~ 83 (267)
+..++..|....+.++|++|+.++-.|=+.+...+. ....+.....|.++|... +...+.|...+.+|-+.+.
T Consensus 77 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~-----~~~~a~~~~~lg~~~~~~--lg~~~~A~~~~~~Al~~~~ 149 (292)
T 1qqe_A 77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ-----FRRGANFKFELGEILEND--LHDYAKAIDCYELAGEWYA 149 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHHHHT--TCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHHh--hcCHHHHHHHHHHHHHHHH
Confidence 557888999999999999999999999887654322 112244455677788762 2446777777777776655
Q ss_pred HHhCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHhhhccCCCCh-hhHhhHHhCCCCHHHHH
Q 024447 84 RAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPD-ESLSLVMSMGFKEQDAK 162 (267)
Q Consensus 84 r~yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~~~~~l~vd~-~~l~~L~~MGF~~~~Ar 162 (267)
..- . .. ..... +.--|.+.+..|+.++|...+..+-...+...... ..-..+. .
T Consensus 150 ~~~-~-~~----------~~~~~----~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~---------~ 204 (292)
T 1qqe_A 150 QDQ-S-VA----------LSNKC----FIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL---------K 204 (292)
T ss_dssp HTT-C-HH----------HHHHH----HHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH---------H
T ss_pred hCC-C-hH----------HHHHH----HHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHH---------H
Confidence 321 1 00 00111 12227778899999999999887655332211000 0000111 1
Q ss_pred HH-HHHhCCCHHHHHHHHHhh
Q 024447 163 RA-LRICSQDVGSAIDFLVEE 182 (267)
Q Consensus 163 ~A-Lr~~~gdve~A~~wL~~~ 182 (267)
.+ +....|+.+.|+.++..-
T Consensus 205 lg~~~~~~g~~~~A~~~~~~a 225 (292)
T 1qqe_A 205 KGLCQLAATDAVAAARTLQEG 225 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHGG
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 22 233467889998877443
No 200
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.26 E-value=7.1 Score=34.37 Aligned_cols=130 Identities=12% Similarity=0.021 Sum_probs=72.5
Q ss_pred hhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHh
Q 024447 7 LHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERAH 86 (267)
Q Consensus 7 l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~r~y 86 (267)
+..-|+...+.|+|++|+.++..+=+.++..+..-.. ++++--|..+| ......+.|..-..+|-.......
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~ 129 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTV-----KVLKTLIEKFE---QVPDSLDDQIFVCEKSIEFAKREK 129 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHH-----HHHHHHHHHHC---SCCSCHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHH-----HHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHHhC
Confidence 5677899999999999999999998888877643111 01111111111 112223333333333322222211
Q ss_pred CCCH--------------------------HHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHhhhcc
Q 024447 87 GKDS--------------------------SRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQ 140 (267)
Q Consensus 87 G~~~--------------------------~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~~~~~ 140 (267)
... +++..+.. ...+....+..+++++-+.+..|+.+.|...+.++......
T Consensus 130 -~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 207 (434)
T 4b4t_Q 130 -RVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFK-KLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANS 207 (434)
T ss_dssp -CCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT-TSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -ccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHH-hcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhc
Confidence 000 00111111 11123344668889999999999999999999988776666
Q ss_pred CCCChh
Q 024447 141 LQVPDE 146 (267)
Q Consensus 141 l~vd~~ 146 (267)
+..++.
T Consensus 208 ~~~~~~ 213 (434)
T 4b4t_Q 208 IYCPTQ 213 (434)
T ss_dssp SCCCHH
T ss_pred CCCchH
Confidence 554443
No 201
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=88.93 E-value=0.8 Score=32.28 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=21.6
Q ss_pred hhhHhhHHhCCCCHHHHHHHHHHh
Q 024447 145 DESLSLVMSMGFKEQDAKRALRIC 168 (267)
Q Consensus 145 ~~~l~~L~~MGF~~~~Ar~ALr~~ 168 (267)
++.++.|+.+||++.+|.+|+...
T Consensus 18 ~ea~~AL~aLGY~~~ea~kav~~v 41 (62)
T 1ixs_A 18 EEAVMALAALGFKEAQARAVVLDL 41 (62)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHH
Confidence 478999999999999999999764
No 202
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.90 E-value=0.52 Score=33.17 Aligned_cols=39 Identities=21% Similarity=0.228 Sum_probs=32.0
Q ss_pred HHHHHHHhC-CCCHHHHHHHHHHcCCCHHHHHH-hccCCCc
Q 024447 218 EKIKELVSI-GFEKELVAEALRRNENDSQKALD-DLTNPES 256 (267)
Q Consensus 218 e~v~~L~~M-GF~~~~A~~ALr~t~ndve~Ald-lL~~pd~ 256 (267)
+.|.+.+++ |-++..|+.-|..+++|++.|++ ++.+|+.
T Consensus 17 e~i~qF~~iTg~~~~~A~~~Le~~~WnLe~Av~~ff~~~~~ 57 (62)
T 2dal_A 17 GLIQQFTTITGASESVGKHMLEACNNNLEMAVTMFLDGGGS 57 (62)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHTTTSCHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHcCCCC
Confidence 456776664 88999999999999999999999 5566643
No 203
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=88.80 E-value=7.6 Score=32.92 Aligned_cols=103 Identities=12% Similarity=0.071 Sum_probs=62.5
Q ss_pred hHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccch--hhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhC
Q 024447 10 NAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNG--PLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERAHG 87 (267)
Q Consensus 10 k~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~--a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~r~yG 87 (267)
.|......++|++|+..+..|=+..... .|.+ +.....|.++|+.+++ .+.|...+.+|-+.++...+
T Consensus 121 ~~~~~~~~~~~~~A~~~~~~al~~~~~~-------~~~~~~~~~~~~lg~~y~~~~~---~~~A~~~~~kal~~~~~~~~ 190 (293)
T 2qfc_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTG-------IDVYQNLYIENAIANIYAENGY---LKKGIDLFEQILKQLEALHD 190 (293)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHTTCCCS-------SCTTHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcC-------CchHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHhcCc
Confidence 4444455555666655555444332221 1222 4455678899988654 57788888888777665432
Q ss_pred CCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHhh
Q 024447 88 KDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAK 137 (267)
Q Consensus 88 ~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~~ 137 (267)
+.. + ....+.--|++.+..|+.++|...+.++-..
T Consensus 191 -~~~-~-------------~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~ 225 (293)
T 2qfc_A 191 -NEE-F-------------DVKVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp -CHH-H-------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -ccc-c-------------hHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 211 1 1133344588999999999999999876543
No 204
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=88.53 E-value=12 Score=34.36 Aligned_cols=55 Identities=20% Similarity=0.099 Sum_probs=33.8
Q ss_pred HHHhhhhccCCchhHhhhhHhhHhhhccCCCChhhHhhHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHh
Q 024447 113 LEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVE 181 (267)
Q Consensus 113 Lqg~v~~h~g~~d~A~~~l~~a~~~~~~l~vd~~~l~~L~~MGF~~~~Ar~ALr~~~gdve~A~~wL~~ 181 (267)
.-+.+.+..|+.++|...+.++-+..+. ++.....|. -+....|+.+.|..++..
T Consensus 521 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~-----------~~~~~~g~~~~A~~~~~~ 575 (597)
T 2xpi_A 521 NLGHAYRKLKMYDAAIDALNQGLLLSTN---DANVHTAIA-----------LVYLHKKIPGLAITHLHE 575 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSSC---CHHHHHHHH-----------HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCC---ChHHHHHHH-----------HHHHHhCCHHHHHHHHHH
Confidence 3467777889999999998876543211 222222221 123447889999987743
No 205
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=88.47 E-value=4.3 Score=37.81 Aligned_cols=16 Identities=19% Similarity=0.063 Sum_probs=12.0
Q ss_pred CCchhHhhhhHhhHhh
Q 024447 122 GQFDKARNALTSAQAK 137 (267)
Q Consensus 122 g~~d~A~~~l~~a~~~ 137 (267)
|+.++|...+.++-..
T Consensus 235 g~~~~A~~~~~~al~~ 250 (474)
T 4abn_A 235 KISQQALSAYAQAEKV 250 (474)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHh
Confidence 7788888888876554
No 206
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=88.46 E-value=1.5 Score=39.86 Aligned_cols=93 Identities=19% Similarity=0.237 Sum_probs=62.2
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 024447 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIE 83 (267)
Q Consensus 4 ~~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~ 83 (267)
+..+..+|..+++.++|++|+.++-.|=+... +.+.....+.+||+.+++ .++| .+.|+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-----------~~~~~~~~la~~~~~~g~---~~~A-------~~~~~ 83 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-----------NEPVFYSNISACYISTGD---LEKV-------IEFTT 83 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-----------TCHHHHHHHHHHHHHHTC---HHHH-------HHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-----------CCcHHHHHHHHHHHHcCC---HHHH-------HHHHH
Confidence 45688999999999999999999987765432 335677888999999875 3444 44444
Q ss_pred HHhCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhH
Q 024447 84 RAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALT 132 (267)
Q Consensus 84 r~yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~ 132 (267)
+....++. .-.+ +...|.+.+..|+.++|...+.
T Consensus 84 ~al~~~p~----------~~~~-----~~~la~~~~~~g~~~~A~~~~~ 117 (537)
T 3fp2_A 84 KALEIKPD----------HSKA-----LLRRASANESLGNFTDAMFDLS 117 (537)
T ss_dssp HHHHHCTT----------CHHH-----HHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHhcCCc----------hHHH-----HHHHHHHHHHcCCHHHHHHHHH
Confidence 43311111 1112 2334777888899999988764
No 207
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=88.42 E-value=5.4 Score=40.10 Aligned_cols=95 Identities=15% Similarity=0.028 Sum_probs=58.6
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Q 024447 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERA 85 (267)
Q Consensus 6 ~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~r~ 85 (267)
.++..|..+.++|+|++|+.++-.|=+. +| +++.....+.-+|..+++ .++|...+.+|-+
T Consensus 11 al~nLG~~~~~~G~~~eAi~~~~kAl~l----~P-------~~~~a~~nLg~~l~~~g~---~~eA~~~~~~Al~----- 71 (723)
T 4gyw_A 11 SLNNLANIKREQGNIEEAVRLYRKALEV----FP-------EFAAAHSNLASVLQQQGK---LQEALMHYKEAIR----- 71 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH----CS-------CCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh----CC-------CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHH-----
Confidence 5778899999999999999998877433 22 344444555666776653 4455444444322
Q ss_pred hCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHh
Q 024447 86 HGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQA 136 (267)
Q Consensus 86 yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~ 136 (267)
.++. . -.++ .--|.+....|+.++|...+.++-+
T Consensus 72 --l~P~---------~-~~a~-----~nLg~~l~~~g~~~~A~~~~~kAl~ 105 (723)
T 4gyw_A 72 --ISPT---------F-ADAY-----SNMGNTLKEMQDVQGALQCYTRAIQ 105 (723)
T ss_dssp --HCTT---------C-HHHH-----HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --hCCC---------C-HHHH-----HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1111 1 1122 2237777788888888887776543
No 208
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=88.28 E-value=3.2 Score=37.35 Aligned_cols=42 Identities=12% Similarity=0.020 Sum_probs=29.8
Q ss_pred HHHhhhhccCCchhHhhhhHhhHhhhccCCCChhhHhhHHhCCCCH
Q 024447 113 LEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKE 158 (267)
Q Consensus 113 Lqg~v~~h~g~~d~A~~~l~~a~~~~~~l~vd~~~l~~L~~MGF~~ 158 (267)
-+|++..+.|+.++|...+.++.+..+ +++.-..|.++.|..
T Consensus 213 ~~glaL~~lGr~deA~~~l~~a~a~~P----~~~~~~aL~~~~~~~ 254 (282)
T 4f3v_A 213 YLAMARRSQGNESAAVALLEWLQTTHP----EPKVAAALKDPSYRL 254 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSC----CHHHHHHHHCTTCCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCC----cHHHHHHHhCCCCCC
Confidence 358999999999999999987766433 244444666666643
No 209
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=88.25 E-value=7.1 Score=30.00 Aligned_cols=97 Identities=12% Similarity=0.086 Sum_probs=51.7
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHH-HHHhCCCCCHHHHHHHHHHHHHHHHH
Q 024447 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWC-YFMLRDISWLSEAGIRLRKAREGIER 84 (267)
Q Consensus 6 ~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwc-y~~l~~~~~l~dA~~rL~~ae~~f~r 84 (267)
.+...|...+..++|++|+..+-.|=+... +.+.....+..| |+..++.. .++|...+.++-+.
T Consensus 46 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-----------~~~~~~~~la~~l~~~~~~~~-~~~A~~~~~~al~~--- 110 (177)
T 2e2e_A 46 QWALLGEYYLWQNDYSNSLLAYRQALQLRG-----------ENAELYAALATVLYYQASQHM-TAQTRAMIDKALAL--- 110 (177)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-----------SCHHHHHHHHHHHHHHTTTCC-CHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----------CCHHHHHHHHHHHHHhcCCcc-hHHHHHHHHHHHHh---
Confidence 455667777777888888777766644332 123445566666 66665531 13333333332221
Q ss_pred HhCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHh
Q 024447 85 AHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQA 136 (267)
Q Consensus 85 ~yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~ 136 (267)
++ .. ..+ +..-|.+.+..|+.++|...+..+-.
T Consensus 111 ----~p---------~~-~~~-----~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 111 ----DS---------NE-ITA-----LMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp ----CT---------TC-HHH-----HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----CC---------Cc-HHH-----HHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 11 11 111 22236667777777777777665543
No 210
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=88.09 E-value=5.1 Score=27.94 Aligned_cols=95 Identities=20% Similarity=0.117 Sum_probs=59.4
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Q 024447 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERA 85 (267)
Q Consensus 6 ~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~r~ 85 (267)
.++..|....+.++|++|+.++-.+-+... +.+.....+..||+..++ .++|...+.++-+.
T Consensus 37 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~---- 98 (136)
T 2fo7_A 37 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-----------RSAEAWYNLGNAYYKQGD---YDEAIEYYQKALEL---- 98 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-----------TCHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-----------CchHHHHHHHHHHHHhcC---HHHHHHHHHHHHHh----
Confidence 345678888999999999999887765432 123344567888877654 45555555444321
Q ss_pred hCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHh
Q 024447 86 HGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQA 136 (267)
Q Consensus 86 yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~ 136 (267)
. .+ . .. ....-+.+.+..|+.++|...+..+-.
T Consensus 99 ~-~~-----------~-~~-----~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 99 D-PR-----------S-AE-----AWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp C-TT-----------C-HH-----HHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred C-CC-----------C-hH-----HHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 1 11 1 11 122236677789999999988876543
No 211
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=87.99 E-value=7.2 Score=31.65 Aligned_cols=27 Identities=15% Similarity=0.089 Sum_probs=15.9
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhh
Q 024447 6 MLHANAKSLIKRHMYKDALEVLTMGEE 32 (267)
Q Consensus 6 ~l~ek~r~~~~~~~y~~al~~ll~ad~ 32 (267)
.+...|...++.++|++|+..+-.|-+
T Consensus 76 ~~~~lg~~~~~~~~~~~A~~~~~~a~~ 102 (272)
T 3u4t_A 76 DFEYYGKILMKKGQDSLAIQQYQAAVD 102 (272)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 345556666666666666666655544
No 212
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=87.96 E-value=6.7 Score=34.10 Aligned_cols=50 Identities=10% Similarity=-0.131 Sum_probs=33.0
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCC
Q 024447 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDI 65 (267)
Q Consensus 5 ~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~ 65 (267)
..+...|....+.++|++|+.++-.|=+. +|. ++-....+.++|...++.
T Consensus 170 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~p~-------~~~~~~~lg~~~~~~~~~ 219 (388)
T 1w3b_A 170 VAWSNLGCVFNAQGEIWLAIHHFEKAVTL----DPN-------FLDAYINLGNVLKEARIF 219 (388)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHH----CTT-------CHHHHHHHHHHHHTTTCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCC-------cHHHHHHHHHHHHHcCCH
Confidence 45667888899999999999988777543 222 222334556677666554
No 213
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.82 E-value=0.83 Score=32.64 Aligned_cols=39 Identities=15% Similarity=0.158 Sum_probs=31.3
Q ss_pred HHHHHHHhC-CCCHHHHHHHHHHcCCCHHHHHH-hccCCCc
Q 024447 218 EKIKELVSI-GFEKELVAEALRRNENDSQKALD-DLTNPES 256 (267)
Q Consensus 218 e~v~~L~~M-GF~~~~A~~ALr~t~ndve~Ald-lL~~pd~ 256 (267)
+.|.+.++. |-++..|+.-|..+++|++.|++ ++.+|..
T Consensus 19 ~~i~qF~~iTg~~~~~A~~~Le~~~WdLe~Al~~ff~~~~~ 59 (66)
T 2dzl_A 19 VMINQFVLAAGCAADQAKQLLQAAHWQFETALSTFFQETNI 59 (66)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHTCSCC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHcCCCC
Confidence 446666655 88999999999999999999999 5556543
No 214
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=87.71 E-value=2.4 Score=38.44 Aligned_cols=26 Identities=8% Similarity=0.055 Sum_probs=14.6
Q ss_pred hhHhHHHHHHhhchHHHHHHHHhhhh
Q 024447 7 LHANAKSLIKRHMYKDALEVLTMGEE 32 (267)
Q Consensus 7 l~ek~r~~~~~~~y~~al~~ll~ad~ 32 (267)
++..|..+++.++|++|+.++-.+=+
T Consensus 279 ~~~l~~~~~~~~~~~~A~~~~~~~~~ 304 (537)
T 3fp2_A 279 YIFLALTLADKENSQEFFKFFQKAVD 304 (537)
T ss_dssp HHHHHHHTCCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhc
Confidence 34455555666666666666555543
No 215
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=87.58 E-value=1.6 Score=40.73 Aligned_cols=97 Identities=11% Similarity=-0.058 Sum_probs=66.7
Q ss_pred hhhhhHhHHHHHHhhch-HHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 024447 4 GLMLHANAKSLIKRHMY-KDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGI 82 (267)
Q Consensus 4 ~~~l~ek~r~~~~~~~y-~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f 82 (267)
+..++.+|+.++..++| ++|+.++-.|=+.. .+.+-...-+.+||+.+++ ...|.+.|
T Consensus 102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-----------p~~~~a~~~lg~~~~~~g~----------~~~A~~~~ 160 (474)
T 4abn_A 102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-----------PELVEAWNQLGEVYWKKGD----------VTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-----------TTCHHHHHHHHHHHHHHTC----------HHHHHHHH
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-----------CCCHHHHHHHHHHHHHcCC----------HHHHHHHH
Confidence 34678899999999999 99999998775542 2334455678889988765 45677777
Q ss_pred HHHhCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhcc---------CCchhHhhhhHhhHhh
Q 024447 83 ERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHS---------GQFDKARNALTSAQAK 137 (267)
Q Consensus 83 ~r~yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~---------g~~d~A~~~l~~a~~~ 137 (267)
+++.-.++. . . .+..-|.+.+.. |+.++|...+.++-+.
T Consensus 161 ~~al~~~p~----------~-~-----~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 208 (474)
T 4abn_A 161 SGALTHCKN----------K-V-----SLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM 208 (474)
T ss_dssp HHHHTTCCC----------H-H-----HHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhCCC----------H-H-----HHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh
Confidence 776644321 1 1 122236667777 8888888888766543
No 216
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=87.07 E-value=5.7 Score=32.91 Aligned_cols=95 Identities=14% Similarity=-0.053 Sum_probs=62.7
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Q 024447 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERA 85 (267)
Q Consensus 6 ~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~r~ 85 (267)
.+..+|..+++.++|++|+.++-.+-+.... .+....-+.+||+.+++ .++|..-+.++-+.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~~---- 84 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPE-----------REEAWRSLGLTQAENEK---DGLAIIALNHARML---- 84 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-----------CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhc----
Confidence 4678999999999999999999887664321 23334457888888765 34555555544332
Q ss_pred hCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHh
Q 024447 86 HGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQA 136 (267)
Q Consensus 86 yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~ 136 (267)
++ .. ...+..-+.+.+..|+.++|...+.++-.
T Consensus 85 ---~~---------~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 117 (327)
T 3cv0_A 85 ---DP---------KD------IAVHAALAVSHTNEHNANAALASLRAWLL 117 (327)
T ss_dssp ---CT---------TC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---Cc---------CC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11 11 11223347777889999999998876644
No 217
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=87.05 E-value=2.7 Score=40.41 Aligned_cols=85 Identities=13% Similarity=0.031 Sum_probs=70.6
Q ss_pred hhhhhhHhHHHHHHhhchHHHHHHHHhhh----hhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHH
Q 024447 3 MGLMLHANAKSLIKRHMYKDALEVLTMGE----EAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKA 78 (267)
Q Consensus 3 ~~~~l~ek~r~~~~~~~y~~al~~ll~ad----~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~a 78 (267)
++-+++.-|.....+|+|++|+.+...|= +.|..=.|.+..+.-|.|.+.. . ....++|..-+.+|
T Consensus 350 ~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~-------~---~G~~~eA~~~~~~A 419 (490)
T 3n71_A 350 VLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNW-------H---AGHIEVGHGMICKA 419 (490)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHH-------H---TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH-------H---CCCHHHHHHHHHHH
Confidence 45667778889999999999999887664 4566777888888888887643 3 45689999999999
Q ss_pred HHHHHHHhCCCHHHHHHHH
Q 024447 79 REGIERAHGKDSSRVRLLQ 97 (267)
Q Consensus 79 e~~f~r~yG~~~~rl~~lk 97 (267)
-..+++.+|.++--+..++
T Consensus 420 l~i~~~~lG~~Hp~~~~~~ 438 (490)
T 3n71_A 420 YAILLVTHGPSHPITKDLE 438 (490)
T ss_dssp HHHHHHHTCTTSHHHHHHH
T ss_pred HHHHHHHhCCCChHHHHHH
Confidence 9999999999998887766
No 218
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=86.85 E-value=6.4 Score=30.23 Aligned_cols=20 Identities=20% Similarity=0.147 Sum_probs=11.4
Q ss_pred HhhhhccCCchhHhhhhHhh
Q 024447 115 GVAAYHSGQFDKARNALTSA 134 (267)
Q Consensus 115 g~v~~h~g~~d~A~~~l~~a 134 (267)
|.+.+..|+.++|...+.++
T Consensus 72 g~~~~~~~~~~~A~~~~~~a 91 (150)
T 4ga2_A 72 GLLYELEENTDKAVECYRRS 91 (150)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCchHHHHHHHHHH
Confidence 55555556666666555544
No 219
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=85.90 E-value=7.6 Score=32.12 Aligned_cols=95 Identities=16% Similarity=-0.054 Sum_probs=46.8
Q ss_pred hhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHh
Q 024447 7 LHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERAH 86 (267)
Q Consensus 7 l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~r~y 86 (267)
+...|....+.++|++|+.++-.+-+... +.+.....+.+||+..++ .++|...+.++-+..
T Consensus 175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~~~---- 236 (327)
T 3cv0_A 175 HASLGVLYNLSNNYDSAAANLRRAVELRP-----------DDAQLWNKLGATLANGNR---PQEALDAYNRALDIN---- 236 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------TCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCC-----------CcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcC----
Confidence 44456666666666666666665544321 122334456666666443 334443333332210
Q ss_pred CCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHhh
Q 024447 87 GKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAK 137 (267)
Q Consensus 87 G~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~~ 137 (267)
.+ .. ..+..-+.+.+..|+.++|...+..+-..
T Consensus 237 -~~-----------~~------~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 269 (327)
T 3cv0_A 237 -PG-----------YV------RVMYNMAVSYSNMSQYDLAAKQLVRAIYM 269 (327)
T ss_dssp -TT-----------CH------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CC-----------CH------HHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 00 00 11222366666777777777777655443
No 220
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=85.72 E-value=4.8 Score=28.66 Aligned_cols=63 Identities=16% Similarity=-0.067 Sum_probs=46.4
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 024447 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREG 81 (267)
Q Consensus 5 ~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~ 81 (267)
..++..|..+++.++|++|+..+-.|=+... +++....-+.+||..+++ .++|..-+.+|-+.
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----------~~~~a~~~lg~~~~~~g~---~~~A~~~~~~al~l 70 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETDP-----------DYVGTYYHLGKLYERLDR---TDDAIDTYAQGIEV 70 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-----------TCTHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----------CcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhh
Confidence 4567889999999999999999987755432 334455668899998875 56676666666554
No 221
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=85.49 E-value=3 Score=31.06 Aligned_cols=102 Identities=12% Similarity=-0.023 Sum_probs=61.7
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Q 024447 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERA 85 (267)
Q Consensus 6 ~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~r~ 85 (267)
.++..|...++.++|++|+..+-.|=+... +.+.....+.+||+.+++ .++|...+.++-+.
T Consensus 49 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-----------~~~~~~~~~a~~~~~~~~---~~~A~~~~~~a~~~---- 110 (166)
T 1a17_A 49 YYGNRSLAYLRTECYGYALGDATRAIELDK-----------KYIKGYYRRAASNMALGK---FRAALRDYETVVKV---- 110 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------TCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-----------ccHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHh----
Confidence 456789999999999999999988776532 224455678889988765 45555544444322
Q ss_pred hCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHhhhccC
Q 024447 86 HGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQL 141 (267)
Q Consensus 86 yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~~~~~l 141 (267)
. .+. ++.. ..+-.+......|+.++|...++........+
T Consensus 111 ~-p~~-----------~~~~----~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 150 (166)
T 1a17_A 111 K-PHD-----------KDAK----MKYQECNKIVKQKAFERAIAGDEHKRSVVDSL 150 (166)
T ss_dssp S-TTC-----------HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred C-CCC-----------HHHH----HHHHHHHHHHHHHHHHHHHHcccchHHHhccc
Confidence 1 111 1111 11112223345677888888877665554443
No 222
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=85.40 E-value=0.37 Score=33.49 Aligned_cols=35 Identities=11% Similarity=0.259 Sum_probs=28.3
Q ss_pred HHHHHHHhC--CCCHHHHHHHHHHcCCCHHHHHH-hcc
Q 024447 218 EKIKELVSI--GFEKELVAEALRRNENDSQKALD-DLT 252 (267)
Q Consensus 218 e~v~~L~~M--GF~~~~A~~ALr~t~ndve~Ald-lL~ 252 (267)
+.+++|.+| .++++..+..|+.++|+++.|+| +|+
T Consensus 14 ~~~~~L~~MFP~lD~evI~~Vl~a~~G~~~~~IdaLLq 51 (54)
T 1p3q_Q 14 DTLNTLQNMFPDMDPSLIEDVCIAAASRIGPCVDALLS 51 (54)
T ss_dssp HHHHHHHHHSTTSCHHHHHHHHHHSCC--CGGGC----
T ss_pred HHHHHHHHHcccCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 669999999 89999999999999999999999 554
No 223
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=85.06 E-value=12 Score=29.03 Aligned_cols=97 Identities=15% Similarity=0.092 Sum_probs=54.9
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHH
Q 024447 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFML-RDISWLSEAGIRLRKAREGIER 84 (267)
Q Consensus 6 ~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l-~~~~~l~dA~~rL~~ae~~f~r 84 (267)
.+...|...++.++|++|+.++-.|=+... +.+.....+++||+.+ ++ .++|..-+.++-+
T Consensus 44 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-----------~~~~~~~~l~~~~~~~~~~---~~~A~~~~~~~~~---- 105 (225)
T 2vq2_A 44 AWLVRAEIYQYLKVNDKAQESFRQALSIKP-----------DSAEINNNYGWFLCGRLNR---PAESMAYFDKALA---- 105 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------TCHHHHHHHHHHHHTTTCC---HHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCC-----------CChHHHHHHHHHHHHhcCc---HHHHHHHHHHHHc----
Confidence 456678888888999999988877654322 2234456678888776 54 4444444444332
Q ss_pred HhCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHh
Q 024447 85 AHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQA 136 (267)
Q Consensus 85 ~yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~ 136 (267)
.+.++ .. ...+..-|.+.+..|+.++|...+..+-.
T Consensus 106 -~~~~~------------~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 141 (225)
T 2vq2_A 106 -DPTYP------------TP---YIANLNKGICSAKQGQFGLAEAYLKRSLA 141 (225)
T ss_dssp -STTCS------------CH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -CcCCc------------ch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11111 10 11122235556666777777766665433
No 224
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=84.74 E-value=4 Score=31.47 Aligned_cols=17 Identities=6% Similarity=0.179 Sum_probs=8.6
Q ss_pred hhhhhhhHHHHHHHhCC
Q 024447 48 GPLLQIDMVWCYFMLRD 64 (267)
Q Consensus 48 ~a~l~ldivwcy~~l~~ 64 (267)
.++..+-+.-||+.+++
T Consensus 30 ~~~~~~~la~~y~~~~~ 46 (150)
T 4ga2_A 30 KSIKGFYFAKLYYEAKE 46 (150)
T ss_dssp HHTTHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHcCC
Confidence 34444455555555543
No 225
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=84.37 E-value=2.4 Score=39.19 Aligned_cols=26 Identities=19% Similarity=0.410 Sum_probs=22.1
Q ss_pred hhhHhhHHhCCCCHHHHHHHHHHhCC
Q 024447 145 DESLSLVMSMGFKEQDAKRALRICSQ 170 (267)
Q Consensus 145 ~~~l~~L~~MGF~~~~Ar~ALr~~~g 170 (267)
+..|..|.+|||+..+..+++...-+
T Consensus 47 e~~l~~L~d~Gfs~~~i~~il~~~P~ 72 (335)
T 4fp9_B 47 ERVMSSLLDMGFSNAHINELLSVRRG 72 (335)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHCSS
T ss_pred HHHHHHHHHCCCCHHHHHHHHHhCcc
Confidence 35788899999999999999988755
No 226
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=83.73 E-value=17 Score=29.85 Aligned_cols=119 Identities=16% Similarity=0.072 Sum_probs=75.3
Q ss_pred hhhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhcc---chhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHH
Q 024447 3 MGLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVD---NGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAR 79 (267)
Q Consensus 3 ~~~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vD---n~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae 79 (267)
++-.+..+|-.+++.++|++|+...-.|=+.=..+.+. +..| +.+..-....-| +..+....+|-.-..+|-
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~--~a~~~~~~~a~a~~n~g~a---l~~Lgr~~eAl~~~~kAL 84 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPE--EAFDHAGFDAFCHAGLAEA---LAGLRSFDEALHSADKAL 84 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTT--SCCCHHHHHHHHHHHHHHH---HHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcch--hhhhhccchHHHHHHHHHH---HHHCCCHHHHHHHHHHHH
Confidence 45567899999999999999999987776554443321 1111 112223333333 444556788888877777
Q ss_pred HHHHHHhCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHhh
Q 024447 80 EGIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAK 137 (267)
Q Consensus 80 ~~f~r~yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~~ 137 (267)
+.|.+.-=.++..-.+.- .+++-| |+.....|+.++|...+.++-+.
T Consensus 85 ~l~n~~~e~~pd~~~A~~------~~~~~r-----G~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 85 HYFNRRGELNQDEGKLWI------SAVYSR-----ALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHCCTTSTHHHHHH------HHHHHH-----HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhhhccccCCCchHHHHH------HHHHhH-----HHHHHHCCCHHHHHHHHHHHHhc
Confidence 766665544443221110 112555 99999999999999999877544
No 227
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=83.08 E-value=1.5 Score=28.32 Aligned_cols=37 Identities=22% Similarity=0.273 Sum_probs=29.6
Q ss_pred hhHhhHHh-CCCCHHHHHHHHHHhCCCHHHHHHHHHhh
Q 024447 146 ESLSLVMS-MGFKEQDAKRALRICSQDVGSAIDFLVEE 182 (267)
Q Consensus 146 ~~l~~L~~-MGF~~~~Ar~ALr~~~gdve~A~~wL~~~ 182 (267)
+.|.+.++ -|-++..|+.-|..+++|++.|++-.++.
T Consensus 7 ~~i~~F~~iTg~~~~~A~~~L~~~~wdle~Ai~~ff~~ 44 (46)
T 1v92_A 7 DALREFVAVTGAEEDRARFFLESAGWDLQIALASFYED 44 (46)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHHHHHT
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 34555444 37899999999999999999999977664
No 228
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=82.41 E-value=15 Score=32.57 Aligned_cols=38 Identities=13% Similarity=-0.046 Sum_probs=26.6
Q ss_pred hhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHh
Q 024447 49 PLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERAH 86 (267)
Q Consensus 49 a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~r~y 86 (267)
+-..+...+|++........+.|..-+.++-+.+....
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 223 (514)
T 2gw1_A 186 ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQL 223 (514)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhh
Confidence 44446667777776677888888888888877654433
No 229
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=82.27 E-value=7.8 Score=26.66 Aligned_cols=60 Identities=22% Similarity=0.078 Sum_probs=41.4
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhh-hhhhHHHHHHHhCCCCCHHHHHHHHHHH
Q 024447 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPL-LQIDMVWCYFMLRDISWLSEAGIRLRKA 78 (267)
Q Consensus 5 ~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~-l~ldivwcy~~l~~~~~l~dA~~rL~~a 78 (267)
|...++|..+++.++|++|+..+-.|=+.... .+. ....+..||+.+++ .++|..-+.++
T Consensus 1 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-----------~~~~~~~~lg~~~~~~~~---~~~A~~~~~~a 61 (99)
T 2kc7_A 1 MDQLKTIKELINQGDIENALQALEEFLQTEPV-----------GKDEAYYLMGNAYRKLGD---WQKALNNYQSA 61 (99)
T ss_dssp CCTHHHHHHHHHHTCHHHHHHHHHHHHHHCSS-----------THHHHHHHHHHHHHHHTC---HHHHHHHHHHH
T ss_pred CcHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-----------cHHHHHHHHHHHHHHcCC---HHHHHHHHHHH
Confidence 34678999999999999999999877654322 233 55667888888765 34444444333
No 230
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=81.74 E-value=2.5 Score=36.10 Aligned_cols=82 Identities=11% Similarity=-0.096 Sum_probs=54.6
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Q 024447 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERA 85 (267)
Q Consensus 6 ~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~r~ 85 (267)
.+...|...++.++|++|+.++-.|=+.........-+.-...+..-.-+.+||..+++. ++|..-..++-+.|.+.
T Consensus 287 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~l~~~~~~ 363 (368)
T 1fch_A 287 SRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQS---DAYGAADARDLSTLLTM 363 (368)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCG---GGHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCCh---HhHHHhHHHHHHHHHHh
Confidence 456678888888888888888877766554432221111222355566778899988765 56777777888999999
Q ss_pred hCCCH
Q 024447 86 HGKDS 90 (267)
Q Consensus 86 yG~~~ 90 (267)
+|.++
T Consensus 364 ~~~~~ 368 (368)
T 1fch_A 364 FGLPQ 368 (368)
T ss_dssp TTCCC
T ss_pred cCCCC
Confidence 98763
No 231
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=80.94 E-value=7.7 Score=26.58 Aligned_cols=48 Identities=10% Similarity=-0.061 Sum_probs=36.1
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCC
Q 024447 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRD 64 (267)
Q Consensus 6 ~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~ 64 (267)
.+...|...++.++|++|+..+-.+-+... +.+-....+.+||..+++
T Consensus 40 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----------~~~~~~~~~a~~~~~~~~ 87 (118)
T 1elw_A 40 LYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-----------DWGKGYSRKAAALEFLNR 87 (118)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-----------TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhCc-----------ccHHHHHHHHHHHHHHhh
Confidence 456789999999999999999988766532 123445678888988765
No 232
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=80.81 E-value=7.4 Score=27.80 Aligned_cols=65 Identities=11% Similarity=-0.045 Sum_probs=46.2
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 024447 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKARE 80 (267)
Q Consensus 5 ~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~ 80 (267)
-.++..|...++.++|++|+..+-.+=+.+.... ..+-...-+.+||+.+++ .++|...+.++-+
T Consensus 40 ~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~--------~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~ 104 (129)
T 2xev_A 40 NALYWLGESYYATRNFQLAEAQFRDLVSRYPTHD--------KAAGGLLKLGLSQYGEGK---NTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTST--------THHHHHHHHHHHHHHTTC---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCc--------ccHHHHHHHHHHHHHcCC---HHHHHHHHHHHHH
Confidence 3567789999999999999999988766553221 124456778999998765 5666666655544
No 233
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=80.59 E-value=1.6 Score=30.69 Aligned_cols=24 Identities=17% Similarity=0.286 Sum_probs=21.6
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHc
Q 024447 217 IEKIKELVSIGFEKELVAEALRRN 240 (267)
Q Consensus 217 ~e~v~~L~~MGF~~~~A~~ALr~t 240 (267)
.+.+..|+.+||++..|.+|++..
T Consensus 18 ~ea~~AL~aLGY~~~ea~kav~~v 41 (62)
T 1ixs_A 18 EEAVMALAALGFKEAQARAVVLDL 41 (62)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHH
Confidence 478999999999999999999864
No 234
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=80.37 E-value=7.6 Score=31.40 Aligned_cols=61 Identities=10% Similarity=-0.084 Sum_probs=44.3
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 024447 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKARE 80 (267)
Q Consensus 6 ~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~ 80 (267)
.+...|...++.++|++|+.++-.|=+... +.+.....+.+||+.+++ .++|..-+.++-+
T Consensus 79 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~-----------~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~ 139 (275)
T 1xnf_A 79 VFNYLGIYLTQAGNFDAAYEAFDSVLELDP-----------TYNYAHLNRGIALYYGGR---DKLAQDDLLAFYQ 139 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------TCTHHHHHHHHHHHHTTC---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCc-----------cccHHHHHHHHHHHHhcc---HHHHHHHHHHHHH
Confidence 456778899999999999999988866533 234556778899998765 4566666665543
No 235
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=80.19 E-value=5 Score=40.36 Aligned_cols=97 Identities=15% Similarity=0.001 Sum_probs=63.2
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q 024447 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIER 84 (267)
Q Consensus 5 ~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~r 84 (267)
-.++..|..+.+.|+|++|+..+-.|=+. +| +++-....+..||..+++ . ..|.+.|++
T Consensus 44 ~a~~nLg~~l~~~g~~~eA~~~~~~Al~l----~P-------~~~~a~~nLg~~l~~~g~---~-------~~A~~~~~k 102 (723)
T 4gyw_A 44 AAHSNLASVLQQQGKLQEALMHYKEAIRI----SP-------TFADAYSNMGNTLKEMQD---V-------QGALQCYTR 102 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CT-------TCHHHHHHHHHHHHHTTC---H-------HHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CC-------CCHHHHHHHHHHHHHcCC---H-------HHHHHHHHH
Confidence 35667899999999999999998776432 22 344455566778887764 3 445555554
Q ss_pred HhCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHhh
Q 024447 85 AHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAK 137 (267)
Q Consensus 85 ~yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~~ 137 (267)
+--.++. .. .+. .--|.+.+..|+.++|...+.++-+.
T Consensus 103 Al~l~P~---------~~-~a~-----~~Lg~~~~~~g~~~eAi~~~~~Al~l 140 (723)
T 4gyw_A 103 AIQINPA---------FA-DAH-----SNLASIHKDSGNIPEAIASYRTALKL 140 (723)
T ss_dssp HHHHCTT---------CH-HHH-----HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCCC---------CH-HHH-----HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4322221 11 122 23388888999999999998876543
No 236
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=79.78 E-value=11 Score=25.01 Aligned_cols=60 Identities=20% Similarity=0.110 Sum_probs=42.1
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHH
Q 024447 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKA 78 (267)
Q Consensus 5 ~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~a 78 (267)
-.++..|..+++.++|++|+.++-.|=+... +.+.....+.+||+.+++ .++|..-+.++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-----------~~~~~~~~l~~~~~~~~~---~~~A~~~~~~a 69 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP-----------NNAEAWYNLGNAYYKQGD---YDEAIEYYQKA 69 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------TCHHHHHHHHHHHHHTTC---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-----------CCHHHHHHHHHHHHHHhh---HHHHHHHHHHH
Confidence 4567889999999999999999987765422 123445678889988765 44555444444
No 237
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.77 E-value=2.4 Score=30.22 Aligned_cols=37 Identities=16% Similarity=0.291 Sum_probs=29.6
Q ss_pred HHHHHHHhC-C-CCHHHHHHHHHHcCCCHHHHHH-hccCC
Q 024447 218 EKIKELVSI-G-FEKELVAEALRRNENDSQKALD-DLTNP 254 (267)
Q Consensus 218 e~v~~L~~M-G-F~~~~A~~ALr~t~ndve~Ald-lL~~p 254 (267)
+.|.+.+++ | -+...|+.-|..+++|++.|++ ++.++
T Consensus 20 e~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff~~~ 59 (67)
T 2dam_A 20 EKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLNEQ 59 (67)
T ss_dssp HHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHHHSS
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 456666664 7 6888999999999999999999 45443
No 238
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=79.15 E-value=3.4 Score=38.88 Aligned_cols=98 Identities=14% Similarity=0.088 Sum_probs=62.2
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 024447 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIE 83 (267)
Q Consensus 4 ~~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~ 83 (267)
+-.++..|..++++++|++|+..+..|=+.. -+.+.....+..||+.+++ .++|. ..|+
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~-----------p~~~~~~~~lg~~~~~~g~---~~~A~-------~~~~ 64 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIELN-----------PSNAIYYGNRSLAYLRTEC---YGYAL-------GDAT 64 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHC-----------TTCHHHHHHHHHHHHHTTC---HHHHH-------HHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----------CccHHHHHHHHHHHHHhcC---HHHHH-------HHHH
Confidence 3456777888899999999999988775542 1235566678888988775 34444 4444
Q ss_pred HHhCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHhh
Q 024447 84 RAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAK 137 (267)
Q Consensus 84 r~yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~~ 137 (267)
++.-.++. .-.++ ..-|.+.+..|+.++|...+.++-+.
T Consensus 65 ~al~l~p~----------~~~~~-----~~lg~~~~~~g~~~eA~~~~~~al~~ 103 (477)
T 1wao_1 65 RAIELDKK----------YIKGY-----YRRAASNMALGKFRAALRDYETVVKV 103 (477)
T ss_dssp HHHHSCTT----------CHHHH-----HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCC----------CHHHH-----HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 43322221 11122 22377778888888888888766443
No 239
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=78.79 E-value=3.2 Score=30.26 Aligned_cols=37 Identities=22% Similarity=0.196 Sum_probs=30.9
Q ss_pred hhHhhHHhC--CCCHHHHHHHHHHhCCCHHHHHHHHHhh
Q 024447 146 ESLSLVMSM--GFKEQDAKRALRICSQDVGSAIDFLVEE 182 (267)
Q Consensus 146 ~~l~~L~~M--GF~~~~Ar~ALr~~~gdve~A~~wL~~~ 182 (267)
..|+++.++ -+...-.++.|.++++|+|.+++.|++.
T Consensus 15 s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE~ 53 (71)
T 2di0_A 15 SLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILEE 53 (71)
T ss_dssp HHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHTT
T ss_pred HHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence 445566655 5788899999999999999999999986
No 240
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=78.64 E-value=25 Score=28.43 Aligned_cols=147 Identities=8% Similarity=-0.084 Sum_probs=77.8
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhC-----CCCCHHHH---HHHHHH
Q 024447 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLR-----DISWLSEA---GIRLRK 77 (267)
Q Consensus 6 ~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~-----~~~~l~dA---~~rL~~ 77 (267)
.+...|.+..+.++|++|+..+-.+=+.+..-.. + -+|. .-+.+||+.+. ....+..+ .....+
T Consensus 43 a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~-----~-~~a~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (225)
T 2yhc_A 43 VQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN-----I-DYVM--YMRGLTNMALDDSALQGFFGVDRSDRDPQQARA 114 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT-----H-HHHH--HHHHHHHHHHHC--------------CCHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc-----H-HHHH--HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHH
Confidence 5677899999999999999998877666543211 0 0122 33455665432 11111111 234555
Q ss_pred HHHHHHHHhCCCHH---------HHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHhhhccCCCChhhH
Q 024447 78 AREGIERAHGKDSS---------RVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESL 148 (267)
Q Consensus 78 ae~~f~r~yG~~~~---------rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~~~~~l~vd~~~l 148 (267)
|...|++.--..|. |+..+.+. .-+.++..|.+.+..|+.++|...+..+-...+. ++..-
T Consensus 115 A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~ 184 (225)
T 2yhc_A 115 AFSDFSKLVRGYPNSQYTTDATKRLVFLKDR-------LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPD---TQATR 184 (225)
T ss_dssp HHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT---SHHHH
T ss_pred HHHHHHHHHHHCcCChhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcC---CCccH
Confidence 55666555433222 11111110 1122345578888999999999988876554433 11111
Q ss_pred hhHHhCCCCHHHHHHHH-HHhCCCHHHHHHHH
Q 024447 149 SLVMSMGFKEQDAKRAL-RICSQDVGSAIDFL 179 (267)
Q Consensus 149 ~~L~~MGF~~~~Ar~AL-r~~~gdve~A~~wL 179 (267)
..+ ..+|. ..--|+.+.|+.++
T Consensus 185 ~a~---------~~l~~~~~~~g~~~~A~~~~ 207 (225)
T 2yhc_A 185 DAL---------PLMENAYRQMQMNAQAEKVA 207 (225)
T ss_dssp HHH---------HHHHHHHHHTTCHHHHHHHH
T ss_pred HHH---------HHHHHHHHHcCCcHHHHHHH
Confidence 111 22222 22357888888876
No 241
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.53 E-value=2.7 Score=29.34 Aligned_cols=38 Identities=16% Similarity=0.335 Sum_probs=31.4
Q ss_pred hhHhhHHh-CCCCHHHHHHHHHHhCCCHHHHHHHHHhhh
Q 024447 146 ESLSLVMS-MGFKEQDAKRALRICSQDVGSAIDFLVEEK 183 (267)
Q Consensus 146 ~~l~~L~~-MGF~~~~Ar~ALr~~~gdve~A~~wL~~~~ 183 (267)
+.|.+.++ .|-++..|+.-|..+++|++.|++-.+++.
T Consensus 17 e~i~qF~~iTg~~~~~A~~~Le~~~WnLe~Av~~ff~~~ 55 (62)
T 2dal_A 17 GLIQQFTTITGASESVGKHMLEACNNNLEMAVTMFLDGG 55 (62)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHTTTSCHHHHHHHHHHSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHcCC
Confidence 45666555 488899999999999999999999877764
No 242
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=76.24 E-value=16 Score=26.22 Aligned_cols=61 Identities=16% Similarity=0.092 Sum_probs=44.7
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHH
Q 024447 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAR 79 (267)
Q Consensus 5 ~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae 79 (267)
..+...|...++.++|++|+.++-.|=+.+.. .+-...-+.+||+.+++ ..+|...+.++-
T Consensus 28 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-----------~~~~~~~l~~~~~~~g~---~~~A~~~~~~al 88 (117)
T 3k9i_A 28 ECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-----------HQALRVFYAMVLYNLGR---YEQGVELLLKII 88 (117)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------CHHHHHHHHHHHHHHTC---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----------chHHHHHHHHHHHHcCC---HHHHHHHHHHHH
Confidence 45677899999999999999999887665432 24455668999998875 456666555553
No 243
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=75.50 E-value=34 Score=29.34 Aligned_cols=56 Identities=21% Similarity=0.099 Sum_probs=36.5
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 024447 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKARE 80 (267)
Q Consensus 6 ~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~ 80 (267)
.++-.|..+++.|+|++|+.++-. + + .+-..+-++-+|..+. ..++|..-+.++.+
T Consensus 103 ~~~~la~~~~~~g~~~~Al~~l~~---------~------~-~~~~~~~l~~~~~~~g---~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 103 FLLMAASIYFYDQNPDAALRTLHQ---------G------D-SLECMAMTVQILLKLD---RLDLARKELKKMQD 158 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTT---------C------C-SHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHhC---------C------C-CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHh
Confidence 456788888999999999988765 1 2 2223444566676654 45666666666544
No 244
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=75.25 E-value=6.2 Score=26.81 Aligned_cols=41 Identities=22% Similarity=0.304 Sum_probs=31.7
Q ss_pred CCHHHHHHH--HhCCCCHHHHHHHHHHcCCCHHHHHH-hccCCC
Q 024447 215 VDIEKIKEL--VSIGFEKELVAEALRRNENDSQKALD-DLTNPE 255 (267)
Q Consensus 215 vd~e~v~~L--~~MGF~~~~A~~ALr~t~ndve~Ald-lL~~pd 255 (267)
|+.+.|.+- +=-|=+++..++-|++|+=||+.|+. +|+..|
T Consensus 8 vPe~li~q~q~VLqgksR~vIirELqrTnLdVN~AvNNlLsRDd 51 (53)
T 2qho_B 8 IPEELISQAQVVLQGKSRSVIIRELQRTNLDVNLAVNNLLSRDD 51 (53)
T ss_dssp SCHHHHHHHHHHSTTCCHHHHHHHHHHTTTCHHHHHHHHHC---
T ss_pred CcHHHHHHHHHHhcCCcHHHHHHHHHHhCccHHHHHHHHhcccc
Confidence 455666554 44599999999999999999999999 787654
No 245
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=75.21 E-value=43 Score=29.54 Aligned_cols=139 Identities=14% Similarity=0.124 Sum_probs=77.0
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHh---------CCCCCHHHHHHHHH
Q 024447 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFML---------RDISWLSEAGIRLR 76 (267)
Q Consensus 6 ~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l---------~~~~~l~dA~~rL~ 76 (267)
.+...|....+.++|++|+..+-.|=+.. -|.+.....+..||... ........+.....
T Consensus 249 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----------p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (472)
T 4g1t_A 249 VLRSAAKFYRRKDEPDKAIELLKKALEYI-----------PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIG 317 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----------TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHH
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHhC-----------CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHH
Confidence 34567888999999999999988775432 23344445566677532 22333444455556
Q ss_pred HHHHHHHHHhCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHhhhccCCCChhhHhhH-HhCC
Q 024447 77 KAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLV-MSMG 155 (267)
Q Consensus 77 ~ae~~f~r~yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~~~~~l~vd~~~l~~L-~~MG 155 (267)
.|...|++....++. .-.+. ..-|.+.+..|+.++|...+.++=+ +.+++.....+ ..+|
T Consensus 318 ~A~~~~~~a~~~~~~----------~~~~~-----~~lg~~~~~~~~~~~A~~~~~kaL~----~~~~~~~~~~~~~~~~ 378 (472)
T 4g1t_A 318 HAVAHLKKADEANDN----------LFRVC-----SILASLHALADQYEEAEYYFQKEFS----KELTPVAKQLLHLRYG 378 (472)
T ss_dssp HHHHHHHHHHHHCTT----------TCCCH-----HHHHHHHHHTTCHHHHHHHHHHHHH----SCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCc----------hhhhh-----hhHHHHHHHhccHHHHHHHHHHHHh----cCCCChHHHHHHHHHH
Confidence 666666655422211 11112 1237788899999999998886533 22233222111 1111
Q ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHh
Q 024447 156 FKEQDAKRALRICSQDVGSAIDFLVE 181 (267)
Q Consensus 156 F~~~~Ar~ALr~~~gdve~A~~wL~~ 181 (267)
. .+....|+.+.|+.+...
T Consensus 379 ------~-~~~~~~~~~~~Ai~~y~k 397 (472)
T 4g1t_A 379 ------N-FQLYQMKCEDKAIHHFIE 397 (472)
T ss_dssp ------H-HHHHTSSCHHHHHHHHHH
T ss_pred ------H-HHHHHCCCHHHHHHHHHH
Confidence 1 122346788888887643
No 246
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=73.24 E-value=54 Score=29.75 Aligned_cols=56 Identities=4% Similarity=0.065 Sum_probs=33.5
Q ss_pred HhhhhccCCchhHhhhhHhhHhhhccCCCChhhH----hhHHh-CCC-CHH-------HHHHHHHHhCCCHH
Q 024447 115 GVAAYHSGQFDKARNALTSAQAKFFQLQVPDESL----SLVMS-MGF-KEQ-------DAKRALRICSQDVG 173 (267)
Q Consensus 115 g~v~~h~g~~d~A~~~l~~a~~~~~~l~vd~~~l----~~L~~-MGF-~~~-------~Ar~ALr~~~gdve 173 (267)
|++.+..|+.++|...+.++-...+. +.... ..+.. .|+ .+. ..++|+...-++.+
T Consensus 207 g~~~~~~g~~~eAl~~~~~al~l~P~---~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~ 275 (382)
T 2h6f_A 207 QWVIQEFKLWDNELQYVDQLLKEDVR---NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNES 275 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHcCChHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHH
Confidence 88888899999999888766443221 22221 13455 677 332 25677776655544
No 247
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=72.87 E-value=15 Score=26.64 Aligned_cols=68 Identities=12% Similarity=0.030 Sum_probs=46.6
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHH
Q 024447 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKA 78 (267)
Q Consensus 4 ~~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~a 78 (267)
+.-.++-|+.++++++|..|...+-+|=+.+..-++ ..+++-.++ .-++.||+.+++ ++.|..-+.++
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~---~~~~~~~i~-~~L~~~~~~~g~---~~~A~~~~~~a 72 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEI---STIDKVSVL-DYLSYAVYQQGD---LDKALLLTKKL 72 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC---CSSCHHHHH-HHHHHHHHHTTC---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCC---CcccHHHHH-HHHHHHHHHccC---HHHHHHHHHHH
Confidence 445678999999999999999999999776643321 123333333 567899999887 34555544444
No 248
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=72.63 E-value=18 Score=24.72 Aligned_cols=59 Identities=20% Similarity=0.128 Sum_probs=40.6
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHH
Q 024447 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKA 78 (267)
Q Consensus 6 ~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~a 78 (267)
.++..|...++.++|++|+.++-.+-+... +.+.....+.++|+.+++ .++|..-+.++
T Consensus 45 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-----------~~~~~~~~la~~~~~~~~---~~~A~~~~~~~ 103 (125)
T 1na0_A 45 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-----------NNAEAWYNLGNAYYKQGD---YDEAIEYYQKA 103 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------TCHHHHHHHHHHHHHTTC---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHHHHHhcC---HHHHHHHHHHH
Confidence 456788999999999999999988765422 123345678889988764 44555444443
No 249
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=72.38 E-value=8.7 Score=37.01 Aligned_cols=31 Identities=26% Similarity=0.249 Sum_probs=21.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Q 024447 65 ISWLSEAGIRLRKAREGIERAHGKDSSRVRLLQ 97 (267)
Q Consensus 65 ~~~l~dA~~rL~~ae~~f~r~yG~~~~rl~~lk 97 (267)
+..+-....++..|++||.++- |..++..|.
T Consensus 687 la~~al~~~~~~~A~~~y~~~~--d~~~l~~l~ 717 (814)
T 3mkq_A 687 LGDASLQRFNFKLAIEAFTNAH--DLESLFLLH 717 (814)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHT--CHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHcc--ChhhhHHHH
Confidence 3344444556788999999874 777776665
No 250
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=72.33 E-value=23 Score=25.04 Aligned_cols=65 Identities=11% Similarity=-0.051 Sum_probs=46.1
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 024447 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIE 83 (267)
Q Consensus 5 ~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~ 83 (267)
..++..|..+++.++|++|+..+-.|=+... +++-....+..||..+++ .++|..-+.++-+...
T Consensus 20 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----------~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~ 84 (115)
T 2kat_A 20 LLRFTLGKTYAEHEQFDAALPHLRAALDFDP-----------TYSVAWKWLGKTLQGQGD---RAGARQAWESGLAAAQ 84 (115)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------TCHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-----------CcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhcc
Confidence 3567789999999999999999887754422 334445677889988765 5667766666655443
No 251
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=72.33 E-value=12 Score=25.40 Aligned_cols=60 Identities=12% Similarity=0.036 Sum_probs=40.6
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHh-CCCCCHHHHHHHHHH
Q 024447 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFML-RDISWLSEAGIRLRK 77 (267)
Q Consensus 6 ~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l-~~~~~l~dA~~rL~~ 77 (267)
.+...|..+++.++|++|+.++-.|=+.... +..+-....+..||+.+ ++. .+|.+-+.+
T Consensus 42 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~---------~~~~~~~~~l~~~~~~~~~~~---~~A~~~~~~ 102 (112)
T 2kck_A 42 YWLMKGKALYNLERYEEAVDCYNYVINVIED---------EYNKDVWAAKADALRYIEGKE---VEAEIAEAR 102 (112)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC---------TTCHHHHHHHHHHHTTCSSCS---HHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCcc---------cchHHHHHHHHHHHHHHhCCH---HHHHHHHHH
Confidence 4567899999999999999999877654321 12344566778888877 654 444444433
No 252
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=72.25 E-value=20 Score=24.82 Aligned_cols=61 Identities=16% Similarity=-0.057 Sum_probs=42.4
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHH
Q 024447 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAR 79 (267)
Q Consensus 5 ~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae 79 (267)
..++..|...++.++|++|+.++..+=+... +.+....-+.+||+.+++ .++|..-+.++-
T Consensus 47 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~---~~~A~~~~~~~~ 107 (131)
T 2vyi_A 47 VYFCNRAAAYSKLGNYAGAVQDCERAICIDP-----------AYSKAYGRMGLALSSLNK---HVEAVAYYKKAL 107 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------TCHHHHHHHHHHHHHTTC---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-----------cCHHHHHHHHHHHHHhCC---HHHHHHHHHHHH
Confidence 3467789999999999999999988866432 223455678889988765 345544444443
No 253
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=72.00 E-value=7.3 Score=31.44 Aligned_cols=45 Identities=11% Similarity=-0.156 Sum_probs=33.6
Q ss_pred HhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCC
Q 024447 9 ANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRD 64 (267)
Q Consensus 9 ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~ 64 (267)
..|....+.++|++|+..+-.|=+... +.+-....+..||+.+++
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~p-----------~~~~~~~~lg~~~~~~g~ 103 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKAP-----------NNVDCLEACAEMQVCRGQ 103 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-----------TCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCC-----------CCHHHHHHHHHHHHHcCC
Confidence 389999999999999999977654322 334445667888888765
No 254
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=71.33 E-value=0.74 Score=49.69 Aligned_cols=41 Identities=20% Similarity=0.212 Sum_probs=34.5
Q ss_pred CChhhHhhHHhC-CCCHHHHHHHHHHhCCCHHHHHHHHHhhh
Q 024447 143 VPDESLSLVMSM-GFKEQDAKRALRICSQDVGSAIDFLVEEK 183 (267)
Q Consensus 143 vd~~~l~~L~~M-GF~~~~Ar~ALr~~~gdve~A~~wL~~~~ 183 (267)
|....|..|-++ |-+.-+||+||..++||+|+|++||-..-
T Consensus 4 ita~~VKeLRe~TGagmmdCKKAL~e~~GD~ekAie~LRkkG 45 (1289)
T 3avx_A 4 ITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSG 45 (1289)
T ss_dssp SCCSCTHHHHTTTCCCTTTTTTTTTTTTTCHHHHHHHHHTTH
T ss_pred cCHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 345567788876 89999999999999999999999996543
No 255
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=71.26 E-value=18 Score=31.38 Aligned_cols=158 Identities=15% Similarity=0.172 Sum_probs=82.2
Q ss_pred HHHHhCCCHHHHHHHHc------CCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHhhhcc-CCCChhhHhhHHhC
Q 024447 82 IERAHGKDSSRVRLLQA------GRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQ-LQVPDESLSLVMSM 154 (267)
Q Consensus 82 f~r~yG~~~~rl~~lkg------~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~~~~~-l~vd~~~l~~L~~M 154 (267)
|..+.|.+...+....+ ....|..+--++..|++ +++.. ++-...+.....-+.. +.--...++-|.++
T Consensus 11 ~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~-lG~~~---~~i~~il~~~P~lL~~~~e~l~p~v~~L~~~ 86 (270)
T 3m66_A 11 KLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKD-VGIED---NQLGAFLTKNHAIFSEDLENLKTRVAYLHSK 86 (270)
T ss_dssp HHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHH-HTCCG---GGHHHHHHHCTTGGGSCHHHHHHHHHHHHHT
T ss_pred HHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHH-cCCCH---HHHHHHHHhCChhhhCCHHHHHHHHHHHHHc
Confidence 45577888887754433 24556677777777776 34332 2222233322211111 00012567788999
Q ss_pred CCCHHHHHHHHHHhCC----C---HHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHhhcCCCCCCCcCCHHHHHH-HHhC
Q 024447 155 GFKEQDAKRALRICSQ----D---VGSAIDFLVEEKAKRVKEREDNEQRRKEIMEQKRYGLTPLKKAVDIEKIKE-LVSI 226 (267)
Q Consensus 155 GF~~~~Ar~ALr~~~g----d---ve~A~~wL~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~~~~~vd~e~v~~-L~~M 226 (267)
|++.....+.+..+-. + +...++|+.+.-.-.. ++.. +.-.+.+.-++.+.+ .+ ...+.. +.+|
T Consensus 87 Gls~~~i~~~l~~~P~lL~~s~~~l~~~v~~L~~~lG~~~----~~i~-~ll~~~P~il~~s~e--~~-~~~v~~l~~~~ 158 (270)
T 3m66_A 87 NFSKADVAQMVRKAPFLLNFSVERLDNRLGFFQKELELSV----KKTR-DLVVRLPRLLTGSLE--PV-KENMKVYRLEL 158 (270)
T ss_dssp TCCHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHCCCH----HHHH-HHHHHSGGGGTSCSH--HH-HHHHHHHHHTS
T ss_pred CCCHHHHHHHHHhCCHHHcCCHHHHHHHHHHHHHHhCCCH----HHHH-HHHHhCCcceeechH--HH-HHHHHHHHHHc
Confidence 9999999998877642 3 5556666643211110 0110 110011111121111 01 234554 4799
Q ss_pred CCCHHHHHHHHHHc-------CCCHHHHHHhc
Q 024447 227 GFEKELVAEALRRN-------ENDSQKALDDL 251 (267)
Q Consensus 227 GF~~~~A~~ALr~t-------~ndve~AldlL 251 (267)
||+.+++..+++.+ ..++..-++.|
T Consensus 159 G~s~~ei~~~v~~~P~il~~s~~~l~~k~~fL 190 (270)
T 3m66_A 159 GFKHNEIQHMITRIPKMLTANKMKLTETFDFV 190 (270)
T ss_dssp CCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhCChhheecHHHHHHHHHHH
Confidence 99999999988875 23455555544
No 256
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=71.12 E-value=11 Score=28.73 Aligned_cols=106 Identities=9% Similarity=-0.034 Sum_probs=63.2
Q ss_pred hhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Q 024447 17 RHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERAHGKDSSRVRLL 96 (267)
Q Consensus 17 ~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~r~yG~~~~rl~~l 96 (267)
+++|++|+.++..|=+.= |-.|. +.++|..-+++. . |.+.|+++.-
T Consensus 8 ~~d~~~A~~~~~~aa~~g-----------~~~a~----lg~~y~~g~~~~---~-------A~~~~~~Aa~--------- 53 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-----------EMFGC----LSLVSNSQINKQ---K-------LFQYLSKACE--------- 53 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-----------CTTHH----HHHHTCTTSCHH---H-------HHHHHHHHHH---------
T ss_pred ccCHHHHHHHHHHHHcCC-----------CHhhh----HHHHHHcCCCHH---H-------HHHHHHHHHc---------
Confidence 478999999998884431 12222 788887765543 2 6666666641
Q ss_pred HcCCcchhhHHHHHHHHHHhhhhc----cCCchhHhhhhHhhHhhhccCCCChhhHhhHHhCCCCHHHHHHHHH-Hh---
Q 024447 97 QAGRHPELALHLRMELLEGVAAYH----SGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRALR-IC--- 168 (267)
Q Consensus 97 kg~~~~E~al~lRL~lLqg~v~~h----~g~~d~A~~~l~~a~~~~~~l~vd~~~l~~L~~MGF~~~~Ar~ALr-~~--- 168 (267)
.|....--.| |++.++ .+|.++|...+.++- +.|++......|.. ..
T Consensus 54 ~g~~~a~~~L--------g~~y~~G~g~~~d~~~A~~~~~~Aa-----------------~~g~~~a~~~Lg~~y~~G~g 108 (138)
T 1klx_A 54 LNSGNGCRFL--------GDFYENGKYVKKDLRKAAQYYSKAC-----------------GLNDQDGCLILGYKQYAGKG 108 (138)
T ss_dssp TTCHHHHHHH--------HHHHHHCSSSCCCHHHHHHHHHHHH-----------------HTTCHHHHHHHHHHHHHTSS
T ss_pred CCCHHHHHHH--------HHHHHcCCCCCccHHHHHHHHHHHH-----------------cCCCHHHHHHHHHHHHCCCC
Confidence 1222111222 444444 678888888877552 34555555555543 33
Q ss_pred -CCCHHHHHHHHHh
Q 024447 169 -SQDVGSAIDFLVE 181 (267)
Q Consensus 169 -~gdve~A~~wL~~ 181 (267)
.+|.++|+.|+..
T Consensus 109 ~~~d~~~A~~~~~~ 122 (138)
T 1klx_A 109 VVKNEKQAVKTFEK 122 (138)
T ss_dssp SCCCHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHH
Confidence 4689999999844
No 257
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=71.04 E-value=15 Score=33.57 Aligned_cols=96 Identities=9% Similarity=-0.052 Sum_probs=61.5
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Q 024447 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERA 85 (267)
Q Consensus 6 ~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~r~ 85 (267)
.++-.|..+.+.++|++|+.++-.| |+.--+++..-.-..+||..++. .+..|...|.+.
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~a-----------l~l~P~~~~a~~~~g~~l~~~g~---------d~~eAl~~~~~a 158 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDA-----------IELNAANYTVWHFRRVLLKSLQK---------DLHEEMNYITAI 158 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHH-----------HHHCTTCHHHHHHHHHHHHHTTC---------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHH-----------HHhCccCHHHHHHHHHHHHHccc---------CHHHHHHHHHHH
Confidence 4566788899999999999988665 33333344444556777777652 144455555554
Q ss_pred hCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHh
Q 024447 86 HGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQA 136 (267)
Q Consensus 86 yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~ 136 (267)
-..+ ...-.+.+-| |++.+..|+.++|...+.++=+
T Consensus 159 l~l~----------P~~~~a~~~~-----g~~~~~~g~~~eAl~~~~kal~ 194 (382)
T 2h6f_A 159 IEEQ----------PKNYQVWHHR-----RVLVEWLRDPSQELEFIADILN 194 (382)
T ss_dssp HHHC----------TTCHHHHHHH-----HHHHHHHTCCTTHHHHHHHHHH
T ss_pred HHHC----------CCCHHHHHHH-----HHHHHHccCHHHHHHHHHHHHH
Confidence 3222 2223344455 7888888999999998887644
No 258
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=70.82 E-value=42 Score=27.41 Aligned_cols=91 Identities=14% Similarity=-0.056 Sum_probs=56.7
Q ss_pred hhhHhHHHHHH----hhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHH----hCCCCCHHHHHHHHHH
Q 024447 6 MLHANAKSLIK----RHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFM----LRDISWLSEAGIRLRK 77 (267)
Q Consensus 6 ~l~ek~r~~~~----~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~----l~~~~~l~dA~~rL~~ 77 (267)
.++..|....+ .++|++|+.++..|=+. +.+-....+.++|+. .++ .+.|..-+.+
T Consensus 40 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-------------~~~~a~~~lg~~~~~g~~~~~~---~~~A~~~~~~ 103 (273)
T 1ouv_A 40 GCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-------------NYSNGCHLLGNLYYSGQGVSQN---TNKALQYYSK 103 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------------TCHHHHHHHHHHHHHTSSSCCC---HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHhCCCCcccC---HHHHHHHHHH
Confidence 45667888888 99999999999888543 245556678888887 443 4444444444
Q ss_pred HHHHHHHHhCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhc----cCCchhHhhhhHhhHh
Q 024447 78 AREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYH----SGQFDKARNALTSAQA 136 (267)
Q Consensus 78 ae~~f~r~yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h----~g~~d~A~~~l~~a~~ 136 (267)
|-+ . | .+ .+++. -|.+.+. .|+.++|...+.++-+
T Consensus 104 a~~-------~---------~--~~-~a~~~-----lg~~~~~~~~~~~~~~~A~~~~~~a~~ 142 (273)
T 1ouv_A 104 ACD-------L---------K--YA-EGCAS-----LGGIYHDGKVVTRDFKKAVEYFTKACD 142 (273)
T ss_dssp HHH-------T---------T--CH-HHHHH-----HHHHHHHCSSSCCCHHHHHHHHHHHHH
T ss_pred HHH-------c---------C--Cc-cHHHH-----HHHHHHcCCCcccCHHHHHHHHHHHHh
Confidence 322 1 1 11 12211 2555555 7888888888776543
No 259
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=70.63 E-value=37 Score=30.71 Aligned_cols=101 Identities=12% Similarity=0.058 Sum_probs=63.5
Q ss_pred hhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhc--cchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q 024447 7 LHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFV--DNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIER 84 (267)
Q Consensus 7 l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~v--Dn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~r 84 (267)
+.-.|+.+...|+|++||.+|-.+ |+.- .+..-+.+=+|=||+.+.+ .+.|...|++..+.-..
T Consensus 103 ~~~la~i~~~~g~~eeAL~~l~~~-----------i~~~~~~~~lea~~l~vqi~L~~~r---~d~A~k~l~~~~~~~~d 168 (310)
T 3mv2_B 103 LYLLATAQAILGDLDKSLETCVEG-----------IDNDEAEGTTELLLLAIEVALLNNN---VSTASTIFDNYTNAIED 168 (310)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHH-----------HTSSCSTTHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH-----------hccCCCcCcHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcCcc
Confidence 346789999999999999998765 1111 1344445557788888554 55666655553221110
Q ss_pred HhCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccC--CchhHhhhhHhhHhh
Q 024447 85 AHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSG--QFDKARNALTSAQAK 137 (267)
Q Consensus 85 ~yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g--~~d~A~~~l~~a~~~ 137 (267)
.. ..+. -++++|.++||..+.| +..+|...+....+.
T Consensus 169 ~~--------------~~~d--~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~ 207 (310)
T 3mv2_B 169 TV--------------SGDN--EMILNLAESYIKFATNKETATSNFYYYEELSQT 207 (310)
T ss_dssp HH--------------HHHH--HHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT
T ss_pred cc--------------ccch--HHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh
Confidence 00 0112 2357899999999888 778888787755433
No 260
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=70.43 E-value=5.9 Score=28.13 Aligned_cols=38 Identities=16% Similarity=0.229 Sum_probs=31.0
Q ss_pred hhHhhHHhC-C-CCHHHHHHHHHHhCCCHHHHHHHHHhhh
Q 024447 146 ESLSLVMSM-G-FKEQDAKRALRICSQDVGSAIDFLVEEK 183 (267)
Q Consensus 146 ~~l~~L~~M-G-F~~~~Ar~ALr~~~gdve~A~~wL~~~~ 183 (267)
++|.+.++. | =++..|+.-|..+++|++.|++-.++..
T Consensus 20 e~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff~~~ 59 (67)
T 2dam_A 20 EKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLNEQ 59 (67)
T ss_dssp HHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHHHSS
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 456665553 6 6899999999999999999999887764
No 261
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=70.29 E-value=6 Score=30.44 Aligned_cols=122 Identities=14% Similarity=0.126 Sum_probs=62.9
Q ss_pred hHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhCCC
Q 024447 10 NAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERAHGKD 89 (267)
Q Consensus 10 k~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~r~yG~~ 89 (267)
.+..++..++|++|+..+-.|=+... +.+-....+.+||+..++ ..+ |...|++..-
T Consensus 16 ~~~~~~~~~~~~~A~~~~~~al~~~p-----------~~~~~~~~lg~~~~~~~~---~~~-------A~~~~~~al~-- 72 (177)
T 2e2e_A 16 PLHQFASQQNPEAQLQALQDKIRANP-----------QNSEQWALLGEYYLWQND---YSN-------SLLAYRQALQ-- 72 (177)
T ss_dssp TTCCCC-----CCCCHHHHHHHHHCC-----------SCHHHHHHHHHHHHHTTC---HHH-------HHHHHHHHHH--
T ss_pred hhhhhhhccCHHHHHHHHHHHHHhCC-----------CcHHHHHHHHHHHHHcCC---HHH-------HHHHHHHHHH--
Confidence 34456678888888887766544322 233456778899998775 344 4444444331
Q ss_pred HHHHHHHHcCCcchhhHHHHHHHHHHhh-hhccCCc--hhHhhhhHhhHhhhccCCCChhhHhhHHhCCCCHHHHHHHHH
Q 024447 90 SSRVRLLQAGRHPELALHLRMELLEGVA-AYHSGQF--DKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRALR 166 (267)
Q Consensus 90 ~~rl~~lkg~~~~E~al~lRL~lLqg~v-~~h~g~~--d~A~~~l~~a~~~~~~l~vd~~~l~~L~~MGF~~~~Ar~ALr 166 (267)
+.. ..++ .+..-|.+ .+..|+. ++|...+..+-.. ++.....+..+| -+.
T Consensus 73 ------~~p-~~~~------~~~~la~~l~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la--------~~~ 125 (177)
T 2e2e_A 73 ------LRG-ENAE------LYAALATVLYYQASQHMTAQTRAMIDKALAL------DSNEITALMLLA--------SDA 125 (177)
T ss_dssp ------HHC-SCHH------HHHHHHHHHHHHTTTCCCHHHHHHHHHHHHH------CTTCHHHHHHHH--------HHH
T ss_pred ------cCC-CCHH------HHHHHHHHHHHhcCCcchHHHHHHHHHHHHh------CCCcHHHHHHHH--------HHH
Confidence 111 1111 12223555 5578888 9999888766543 222222222111 123
Q ss_pred HhCCCHHHHHHHHHh
Q 024447 167 ICSQDVGSAIDFLVE 181 (267)
Q Consensus 167 ~~~gdve~A~~wL~~ 181 (267)
...|+.+.|+.++..
T Consensus 126 ~~~g~~~~A~~~~~~ 140 (177)
T 2e2e_A 126 FMQANYAQAIELWQK 140 (177)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHH
Confidence 336788888887744
No 262
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=68.78 E-value=4.8 Score=26.65 Aligned_cols=33 Identities=21% Similarity=0.237 Sum_probs=27.1
Q ss_pred hhhHhhHHhC-CCCH-HHHHHHHHHhCCCHHHHHH
Q 024447 145 DESLSLVMSM-GFKE-QDAKRALRICSQDVGSAID 177 (267)
Q Consensus 145 ~~~l~~L~~M-GF~~-~~Ar~ALr~~~gdve~A~~ 177 (267)
++.|++..++ |-+. .+|+.=|.++|+|++.|++
T Consensus 6 de~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~ 40 (45)
T 3e21_A 6 EMILADFQACTGIENIDEAITLLEQNNWDLVAAIN 40 (45)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHT
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHH
Confidence 4567777666 7785 9999999999999999986
No 263
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=68.61 E-value=24 Score=25.21 Aligned_cols=64 Identities=17% Similarity=0.010 Sum_probs=45.9
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 024447 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGI 82 (267)
Q Consensus 5 ~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f 82 (267)
..++..|...++.++|++|+..+-.|=+... +.+-...-+..||+.+++ .++|..-+.++-+..
T Consensus 39 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-----------~~~~~~~~lg~~~~~~~~---~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 39 RGYSNRAAALAKLMSFPEAIADCNKAIEKDP-----------NFVRAYIRKATAQIAVKE---YASALETLDAARTKD 102 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------TCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-----------CcHHHHHHHHHHHHHHhC---HHHHHHHHHHHHHhC
Confidence 3567789999999999999999877755422 334455678889998875 466666666665544
No 264
>1zza_A Stannin, AG8_1; helix, membrane protein; NMR {Homo sapiens}
Probab=68.52 E-value=0.97 Score=33.44 Aligned_cols=19 Identities=37% Similarity=0.698 Sum_probs=15.0
Q ss_pred hhHHHHHHHhCCCCCHHHH
Q 024447 53 IDMVWCYFMLRDISWLSEA 71 (267)
Q Consensus 53 ldivwcy~~l~~~~~l~dA 71 (267)
|=+.|||++|+-|.|-+|-
T Consensus 31 i~gcwcylrlqri~qsede 49 (90)
T 1zza_A 31 ILGCWCYLRLQRISQSEDE 49 (90)
T ss_dssp HHHHHTTTSSCSSCSSCCC
T ss_pred HHHHHHHHHHHHHhccccc
Confidence 3468999999999886553
No 265
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=68.34 E-value=13 Score=25.33 Aligned_cols=43 Identities=26% Similarity=0.320 Sum_probs=34.0
Q ss_pred CCChhhHh--hHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHhhhh
Q 024447 142 QVPDESLS--LVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEKA 184 (267)
Q Consensus 142 ~vd~~~l~--~L~~MGF~~~~Ar~ALr~~~gdve~A~~wL~~~~~ 184 (267)
.|+++.|+ +-+=-|=|++--.+-|+.||=||..|++-|+++-+
T Consensus 7 ~vPe~li~q~q~VLqgksR~vIirELqrTnLdVN~AvNNlLsRDd 51 (53)
T 2qho_B 7 VIPEELISQAQVVLQGKSRSVIIRELQRTNLDVNLAVNNLLSRDD 51 (53)
T ss_dssp GSCHHHHHHHHHHSTTCCHHHHHHHHHHTTTCHHHHHHHHHC---
T ss_pred cCcHHHHHHHHHHhcCCcHHHHHHHHHHhCccHHHHHHHHhcccc
Confidence 45677776 34556999999999999999999999999988754
No 266
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=68.30 E-value=22 Score=26.97 Aligned_cols=60 Identities=13% Similarity=0.002 Sum_probs=42.1
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHH
Q 024447 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKA 78 (267)
Q Consensus 5 ~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~a 78 (267)
..++..|..+++.++|++|+..+-.|=+.. .+++....-+..||+.+++ ..+|..-+.++
T Consensus 46 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----------p~~~~~~~~lg~~~~~~g~---~~~A~~~~~~a 105 (164)
T 3sz7_A 46 IYLSNRAAAYSASGQHEKAAEDAELATVVD-----------PKYSKAWSRLGLARFDMAD---YKGAKEAYEKG 105 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------TTCHHHHHHHHHHHHHTTC---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----------CCCHHHHHHHHHHHHHccC---HHHHHHHHHHH
Confidence 356788999999999999999988775543 2335556678889988875 34444444433
No 267
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=67.66 E-value=44 Score=31.16 Aligned_cols=96 Identities=9% Similarity=-0.047 Sum_probs=61.9
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Q 024447 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERA 85 (267)
Q Consensus 6 ~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~r~ 85 (267)
.++..|..+++.++|++|+.++-.|=+... +.+-....+.+||+.+++ .++|...+.+|-+.
T Consensus 59 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----------~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~---- 120 (568)
T 2vsy_A 59 AVARLGRVRWTQQRHAEAAVLLQQASDAAP-----------EHPGIALWLGHALEDAGQ---AEAAAAAYTRAHQL---- 120 (568)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------TCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-----------CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHh----
Confidence 466789999999999999999988765432 234455678899998876 45555554444332
Q ss_pred hCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhcc---CCchhHhhhhHhhHhh
Q 024447 86 HGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHS---GQFDKARNALTSAQAK 137 (267)
Q Consensus 86 yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~---g~~d~A~~~l~~a~~~ 137 (267)
++ .. ..++ ..-+.+.+.. |+.++|...+.++-+.
T Consensus 121 ---~p---------~~-~~~~-----~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 121 ---LP---------EE-PYIT-----AQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp ---CT---------TC-HHHH-----HHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred ---CC---------CC-HHHH-----HHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 11 11 1122 2225566677 8889998888766443
No 268
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=66.80 E-value=21 Score=25.04 Aligned_cols=59 Identities=14% Similarity=-0.083 Sum_probs=40.8
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHH
Q 024447 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKA 78 (267)
Q Consensus 6 ~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~a 78 (267)
.++..|...++.++|++|+.++-.|=+... +.+-...-+.+||+.+++ .++|..-+.++
T Consensus 52 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-----------~~~~~~~~la~~~~~~~~---~~~A~~~~~~~ 110 (133)
T 2lni_A 52 LYSNRAACYTKLLEFQLALKDCEECIQLEP-----------TFIKGYTRKAAALEAMKD---YTKAMDVYQKA 110 (133)
T ss_dssp HHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-----------TCHHHHHHHHHHHHHTTC---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCC-----------CchHHHHHHHHHHHHHhh---HHHHHHHHHHH
Confidence 466788999999999999999887766432 234455677889988765 34444444433
No 269
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=66.05 E-value=11 Score=27.42 Aligned_cols=36 Identities=11% Similarity=0.261 Sum_probs=30.4
Q ss_pred HHHHHHHhC--CCCHHHHHHHHHHcCCCHHHHHH-hccC
Q 024447 218 EKIKELVSI--GFEKELVAEALRRNENDSQKALD-DLTN 253 (267)
Q Consensus 218 e~v~~L~~M--GF~~~~A~~ALr~t~ndve~Ald-lL~~ 253 (267)
+.|.++.++ -+....+.+.|+..++|+++++. +|.+
T Consensus 15 s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE~ 53 (71)
T 2di0_A 15 SLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILEE 53 (71)
T ss_dssp HHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHTT
T ss_pred HHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence 557777777 68889999999999999999999 6653
No 270
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=65.82 E-value=16 Score=26.24 Aligned_cols=88 Identities=10% Similarity=0.048 Sum_probs=49.6
Q ss_pred hhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Q 024447 17 RHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERAHGKDSSRVRLL 96 (267)
Q Consensus 17 ~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~r~yG~~~~rl~~l 96 (267)
.++|++|+.++-.|=+.... =.+.+....-+.+||+.+++ .++|...+.++-+. +
T Consensus 3 ~g~~~~A~~~~~~al~~~~~--------~p~~~~~~~~lg~~~~~~~~---~~~A~~~~~~al~~-------~------- 57 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQ--------GKDLAECYLGLGSTFRTLGE---YRKAEAVLANGVKQ-------F------- 57 (117)
T ss_dssp ----CCCHHHHHHHHSSCCC--------HHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH-------C-------
T ss_pred CCcHHHHHHHHHHHHHcCCC--------CccHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHh-------C-------
Confidence 46777777777665432100 12445566778899998875 34555444443322 1
Q ss_pred HcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHhh
Q 024447 97 QAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAK 137 (267)
Q Consensus 97 kg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~~ 137 (267)
...+ .+ +..-|.+.+..|+.++|...+..+-..
T Consensus 58 --p~~~-~~-----~~~l~~~~~~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 58 --PNHQ-AL-----RVFYAMVLYNLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp --TTCH-HH-----HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred --CCch-HH-----HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1111 12 223488888999999999988866443
No 271
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.72 E-value=35 Score=24.36 Aligned_cols=61 Identities=15% Similarity=0.053 Sum_probs=42.5
Q ss_pred hhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHH
Q 024447 4 GLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKA 78 (267)
Q Consensus 4 ~~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~a 78 (267)
...+...|..+++.++|++|+..+..+=+... +.+-....+..||+.+++ .++|..-+.++
T Consensus 65 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----------~~~~~~~~~a~~~~~~~~---~~~A~~~~~~a 125 (148)
T 2dba_A 65 AVLHRNRAACHLKLEDYDKAETEASKAIEKDG-----------GDVKALYRRSQALEKLGR---LDQAVLDLQRC 125 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-----------CCHHHHHHHHHHHHHHTC---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc-----------cCHHHHHHHHHHHHHcCC---HHHHHHHHHHH
Confidence 34567789999999999999999987755421 224455678889988765 44454444444
No 272
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=64.71 E-value=6.4 Score=33.77 Aligned_cols=24 Identities=25% Similarity=0.533 Sum_probs=22.3
Q ss_pred hhhHhhHHhCCCCHHHHHHHHHHh
Q 024447 145 DESLSLVMSMGFKEQDAKRALRIC 168 (267)
Q Consensus 145 ~~~l~~L~~MGF~~~~Ar~ALr~~ 168 (267)
+++++.|+.+||++.+|.+|+...
T Consensus 161 ~ea~~AL~~LGy~~~ea~~av~~~ 184 (203)
T 1cuk_A 161 QEAVARLVALGYKPQEASRMVSKI 184 (203)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh
Confidence 579999999999999999999886
No 273
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=64.52 E-value=29 Score=25.72 Aligned_cols=62 Identities=21% Similarity=0.196 Sum_probs=44.1
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 024447 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREG 81 (267)
Q Consensus 6 ~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~ 81 (267)
.++..|...++.++|++|+..+-.|=+.. .+.+.....+..||+.+++ .++|..-+.++-+.
T Consensus 54 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----------p~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 54 YFLGLGACRQSLGLYEQALQSYSYGALMD-----------INEPRFPFHAAECHLQLGD---LDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------TTCTHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcC-----------CCCcHHHHHHHHHHHHcCC---HHHHHHHHHHHHHh
Confidence 45677999999999999999987764432 2334455778999998875 45666666555443
No 274
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=63.76 E-value=69 Score=27.31 Aligned_cols=97 Identities=18% Similarity=0.148 Sum_probs=63.1
Q ss_pred hhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHh
Q 024447 7 LHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERAH 86 (267)
Q Consensus 7 l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~r~y 86 (267)
++-.|..+++.|++++|...+-.+=+.- | +....++=..|+.+... . .+...|...|++..
T Consensus 133 ~~~l~~~~~~~g~~~~A~~~l~~~~~~~----p-------~~~~~~l~~a~~~l~~~-~-------~~~~eA~~~~~~~l 193 (291)
T 3mkr_A 133 MAMTVQILLKLDRLDLARKELKKMQDQD----E-------DATLTQLATAWVSLAAG-G-------EKLQDAYYIFQEMA 193 (291)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC----T-------TCHHHHHHHHHHHHHHC-T-------THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhC----c-------CcHHHHHHHHHHHHHhC-c-------hHHHHHHHHHHHHH
Confidence 4567889999999999999988775431 2 22345565678877653 2 45556666665543
Q ss_pred CCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHhh
Q 024447 87 GKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAK 137 (267)
Q Consensus 87 G~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~~ 137 (267)
..++ .. ..++.-.|++....|+.++|...+..+-..
T Consensus 194 ~~~p---------~~------~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 194 DKCS---------PT------LLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHSC---------CC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhCC---------Cc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1111 11 123344588888999999999999876543
No 275
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=63.37 E-value=3.7 Score=28.19 Aligned_cols=25 Identities=28% Similarity=0.557 Sum_probs=22.5
Q ss_pred CCHHHHHHHHHHcCCCHHHHHHhcc
Q 024447 228 FEKELVAEALRRNENDSQKALDDLT 252 (267)
Q Consensus 228 F~~~~A~~ALr~t~ndve~AldlL~ 252 (267)
|++.....||+.++||+.+|+..|-
T Consensus 19 ~E~~~i~~aL~~~~gn~~~aA~~LG 43 (63)
T 3e7l_A 19 FEKIFIEEKLREYDYDLKRTAEEIG 43 (63)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHC
Confidence 6788999999999999999999764
No 276
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.23 E-value=6.9 Score=27.75 Aligned_cols=39 Identities=15% Similarity=0.220 Sum_probs=31.0
Q ss_pred hhHhhHHh-CCCCHHHHHHHHHHhCCCHHHHHHHHHhhhh
Q 024447 146 ESLSLVMS-MGFKEQDAKRALRICSQDVGSAIDFLVEEKA 184 (267)
Q Consensus 146 ~~l~~L~~-MGF~~~~Ar~ALr~~~gdve~A~~wL~~~~~ 184 (267)
+.|.+.++ -|=++..|+.-|..+++|++.|++-.++.+.
T Consensus 19 ~~i~qF~~iTg~~~~~A~~~Le~~~WdLe~Al~~ff~~~~ 58 (66)
T 2dzl_A 19 VMINQFVLAAGCAADQAKQLLQAAHWQFETALSTFFQETN 58 (66)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHTCSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHcCCC
Confidence 44555444 3789999999999999999999998877643
No 277
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=62.77 E-value=12 Score=32.49 Aligned_cols=24 Identities=17% Similarity=0.365 Sum_probs=21.9
Q ss_pred hhhHhhHHhCCCCHHHHHHHHHHh
Q 024447 145 DESLSLVMSMGFKEQDAKRALRIC 168 (267)
Q Consensus 145 ~~~l~~L~~MGF~~~~Ar~ALr~~ 168 (267)
+++++.|+.+||++.+|.+|+...
T Consensus 165 ~ea~~AL~~LGy~~~ea~~av~~~ 188 (212)
T 2ztd_A 165 SPVVEALVGLGFAAKQAEEATDTV 188 (212)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHH
Confidence 589999999999999999999764
No 278
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=62.38 E-value=13 Score=36.37 Aligned_cols=113 Identities=11% Similarity=-0.054 Sum_probs=64.0
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHH---
Q 024447 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGI--- 82 (267)
Q Consensus 6 ~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f--- 82 (267)
.++.+|+.+++.++|++|+..+-.|=+.. -+.+-.......+|+.+++ .++|..-+++|-+.-
T Consensus 435 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-----------p~~~~a~~~lg~~~~~~g~---~~~A~~~~~~al~l~P~~ 500 (681)
T 2pzi_A 435 LPLMEVRALLDLGDVAKATRKLDDLAERV-----------GWRWRLVWYRAVAELLTGD---YDSATKHFTEVLDTFPGE 500 (681)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----------CCCHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccC-----------cchHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCC
Confidence 56788999999999999999987765432 2234444556667777654 445555555443321
Q ss_pred HHHhCCCHHHHHHHHcCCcchhhHHH----------HHHHHHHhhhhccCCchhHhhhhHhh
Q 024447 83 ERAHGKDSSRVRLLQAGRHPELALHL----------RMELLEGVAAYHSGQFDKARNALTSA 134 (267)
Q Consensus 83 ~r~yG~~~~rl~~lkg~~~~E~al~l----------RL~lLqg~v~~h~g~~d~A~~~l~~a 134 (267)
-..| .+.-.+..-+|.... ...|- ..+.--|.+.+..|+.++|...+.++
T Consensus 501 ~~~~-~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 560 (681)
T 2pzi_A 501 LAPK-LALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEV 560 (681)
T ss_dssp SHHH-HHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred hHHH-HHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 1111 111222222233322 22221 12333477777888888888877754
No 279
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=62.30 E-value=2.7 Score=29.05 Aligned_cols=38 Identities=13% Similarity=0.252 Sum_probs=27.3
Q ss_pred hhhHhhHHhC--CCCHHHHHHHHHHhCCCHHHHHHHHHhh
Q 024447 145 DESLSLVMSM--GFKEQDAKRALRICSQDVGSAIDFLVEE 182 (267)
Q Consensus 145 ~~~l~~L~~M--GF~~~~Ar~ALr~~~gdve~A~~wL~~~ 182 (267)
.+.+.+|.+| .++.+--+-.|++++|+++.|++-|++-
T Consensus 13 ~~~~~~L~~MFP~lD~evI~~Vl~a~~G~~~~~IdaLLqm 52 (54)
T 1p3q_Q 13 KDTLNTLQNMFPDMDPSLIEDVCIAAASRIGPCVDALLSL 52 (54)
T ss_dssp HHHHHHHHHHSTTSCHHHHHHHHHHSCC--CGGGC-----
T ss_pred HHHHHHHHHHcccCCHHHHHHHHHHcCCCHHHHHHHHHhh
Confidence 3678899999 6788889999999999999999988653
No 280
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=62.17 E-value=36 Score=23.47 Aligned_cols=68 Identities=12% Similarity=-0.018 Sum_probs=44.8
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHH
Q 024447 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAR 79 (267)
Q Consensus 5 ~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae 79 (267)
..++..|...++.++|++|+.++-.|=+......+... ..+....-+.+||+.+++ ...|...+.++-
T Consensus 39 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~----~~~~~~~~la~~~~~~~~---~~~A~~~~~~~~ 106 (131)
T 1elr_A 39 TYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYR----QIAKAYARIGNSYFKEEK---YKDAIHFYNKSL 106 (131)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHH----HHHHHHHHHHHHHHHTTC---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHH----HHHHHHHHHHHHHHHhcc---HHHHHHHHHHHH
Confidence 34677899999999999999999888766543321110 114455677888888765 455555554443
No 281
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=61.06 E-value=35 Score=25.96 Aligned_cols=60 Identities=17% Similarity=0.131 Sum_probs=42.2
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHH
Q 024447 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAR 79 (267)
Q Consensus 6 ~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae 79 (267)
.++..|....+.++|++|+..+-.|=+.. -+.+.....+..||+.+++ ..+|...+.++-
T Consensus 57 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~-----------p~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al 116 (148)
T 2vgx_A 57 FFLGLGACRQAMGQYDLAIHSYSYGAVMD-----------IXEPRFPFHAAECLLQXGE---LAEAESGLFLAQ 116 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----------TTCTHHHHHHHHHHHHTTC---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcC-----------CCCchHHHHHHHHHHHcCC---HHHHHHHHHHHH
Confidence 45678999999999999999987764332 2334455778999998775 455555555443
No 282
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=60.79 E-value=42 Score=23.88 Aligned_cols=63 Identities=16% Similarity=0.063 Sum_probs=44.0
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 024447 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREG 81 (267)
Q Consensus 5 ~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~ 81 (267)
..++..|..+++.++|++|+..+-.|=+... +.+....-+.+||+.+++ ..+|..-+.+|-+.
T Consensus 44 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-----------~~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 44 VYYTNRALCYLKMQQPEQALADCRRALELDG-----------QSVKAHFFLGQCQLEMES---YDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------TCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHH
Confidence 3567789999999999999998877755432 234456678899998875 34555555444443
No 283
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=59.10 E-value=43 Score=24.69 Aligned_cols=60 Identities=18% Similarity=0.114 Sum_probs=40.9
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHH
Q 024447 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKA 78 (267)
Q Consensus 5 ~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~a 78 (267)
..++-.|..+++.++|++|+..+-.|=+. =.+++-.-.-+..||+.+++ .++|..-+.+|
T Consensus 48 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----------~p~~~~a~~~lg~~~~~~~~---~~~A~~~~~~a 107 (126)
T 4gco_A 48 ILYSNRAACLTKLMEFQRALDDCDTCIRL-----------DSKFIKGYIRKAACLVAMRE---WSKAQRAYEDA 107 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------CTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHH
T ss_pred HHHHHHhhHHHhhccHHHHHHHHHHHHHh-----------hhhhhHHHHHHHHHHHHCCC---HHHHHHHHHHH
Confidence 35677899999999999999988766332 22344445667888988875 34454444443
No 284
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=57.35 E-value=38 Score=26.43 Aligned_cols=62 Identities=10% Similarity=-0.005 Sum_probs=45.2
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 024447 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKARE 80 (267)
Q Consensus 5 ~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~ 80 (267)
..++-.|..+.+.++|++|+..+-.|=+... +.+..-..+.-||+.+++ .++|..-+.+|-+
T Consensus 71 ~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P-----------~~~~~~~~lg~~~~~lg~---~~eA~~~~~~al~ 132 (151)
T 3gyz_A 71 DYIMGLAAIYQIKEQFQQAADLYAVAFALGK-----------NDYTPVFHTGQCQLRLKA---PLKAKECFELVIQ 132 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-----------SCCHHHHHHHHHHHHTTC---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHhhCC-----------CCcHHHHHHHHHHHHcCC---HHHHHHHHHHHHH
Confidence 3466789999999999999999987755432 345556678889998875 4566666665544
No 285
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=56.40 E-value=92 Score=28.20 Aligned_cols=50 Identities=14% Similarity=0.086 Sum_probs=28.7
Q ss_pred Hhhhhc----cCCchhHhhhhHhhHhhhccCCCChhhHhhHHhCCCCHHHHHHHHH-Hh----CCCHHHHHHHHHh
Q 024447 115 GVAAYH----SGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRALR-IC----SQDVGSAIDFLVE 181 (267)
Q Consensus 115 g~v~~h----~g~~d~A~~~l~~a~~~~~~l~vd~~~l~~L~~MGF~~~~Ar~ALr-~~----~gdve~A~~wL~~ 181 (267)
|++.+. .++.++|...+..+-+ .|.+......|.- .. .+|.+.|+.|+..
T Consensus 370 g~~y~~g~g~~~~~~~A~~~~~~A~~-----------------~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 428 (490)
T 2xm6_A 370 GNALLQGKGVKKDEQQAAIWMRKAAE-----------------QGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDT 428 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHH-----------------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHh-----------------CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 444444 5677777777665433 2333333333432 22 5789999999844
No 286
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=55.76 E-value=25 Score=24.03 Aligned_cols=55 Identities=18% Similarity=0.110 Sum_probs=37.8
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCC
Q 024447 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDI 65 (267)
Q Consensus 6 ~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~ 65 (267)
.++..|...++.++|++|+..+-.|=+......+. ..++-...-+.+||..+++.
T Consensus 40 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~-----~~~~~~~~~~~~~~~~~~~~ 94 (111)
T 2l6j_A 40 GYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHV-----AIRSKLQYRLELAQGAVGSV 94 (111)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSH-----HHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHH-----HHHHHHHHHHHHHHHHHHhH
Confidence 46778999999999999999998876654433111 11455556667777776643
No 287
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=55.62 E-value=5.7 Score=29.27 Aligned_cols=25 Identities=8% Similarity=0.096 Sum_probs=22.0
Q ss_pred CCHHHHHHHHHHcCCCHHHHHHhcc
Q 024447 228 FEKELVAEALRRNENDSQKALDDLT 252 (267)
Q Consensus 228 F~~~~A~~ALr~t~ndve~AldlL~ 252 (267)
|++....+||+.++||+.+|+..|-
T Consensus 41 ~Er~~I~~aL~~~~GN~s~AA~~LG 65 (81)
T 1umq_A 41 VRWEHIQRIYEMCDRNVSETARRLN 65 (81)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHhC
Confidence 5678889999999999999999764
No 288
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=55.46 E-value=78 Score=25.29 Aligned_cols=59 Identities=10% Similarity=-0.141 Sum_probs=39.7
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCC-CHHHHHHHHHHH
Q 024447 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDIS-WLSEAGIRLRKA 78 (267)
Q Consensus 6 ~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~-~l~dA~~rL~~a 78 (267)
.++.-|......++|++|+.++..|=+. +.+.-+..+..+|.. ..+. ..+.|..-+.+|
T Consensus 20 a~~~lg~~~~~~~~~~~A~~~~~~a~~~-------------g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 20 AQYYLADTWVSSGDYQKAEYWAQKAAAQ-------------GDGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHT-------------TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHc-------------CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 4566788888899999999999988431 345556677888876 4332 355555544444
No 289
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=54.19 E-value=14 Score=31.53 Aligned_cols=24 Identities=17% Similarity=0.408 Sum_probs=22.2
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHc
Q 024447 217 IEKIKELVSIGFEKELVAEALRRN 240 (267)
Q Consensus 217 ~e~v~~L~~MGF~~~~A~~ALr~t 240 (267)
.+.+..|+.+||++.+|.+|++..
T Consensus 161 ~ea~~AL~~LGy~~~ea~~av~~~ 184 (203)
T 1cuk_A 161 QEAVARLVALGYKPQEASRMVSKI 184 (203)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh
Confidence 478999999999999999999886
No 290
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=53.01 E-value=1.1e+02 Score=26.51 Aligned_cols=80 Identities=15% Similarity=0.081 Sum_probs=47.3
Q ss_pred hhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhH
Q 024447 48 GPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKA 127 (267)
Q Consensus 48 ~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~r~yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A 127 (267)
.+.....+.++|+..++ ...|...+.+|-+........+.++-..+ ..+....+.--|.+.+..|+.++|
T Consensus 146 ~a~~~~~~g~~~~~~g~---~~~A~~~y~~Al~~~p~~~~~~~~~~~~~-------~~~~~~~~~nla~~~~~~g~~~~A 215 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGK---YKQALLQYKKIVSWLEYESSFSNEEAQKA-------QALRLASHLNLAMCHLKLQAFSAA 215 (336)
T ss_dssp HHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHTTTCCCCCSHHHHHH-------HHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHhhccccCChHHHHHH-------HHHHHHHHHHHHHHHHHcCCHHHH
Confidence 44555667778887765 45565555555544433322221111111 122345556668899999999999
Q ss_pred hhhhHhhHhh
Q 024447 128 RNALTSAQAK 137 (267)
Q Consensus 128 ~~~l~~a~~~ 137 (267)
...+.++-..
T Consensus 216 ~~~~~~al~~ 225 (336)
T 1p5q_A 216 IESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9998877553
No 291
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=52.20 E-value=16 Score=24.08 Aligned_cols=33 Identities=18% Similarity=0.270 Sum_probs=28.1
Q ss_pred HHHHHHHhC-CCCH-HHHHHHHHHcCCCHHHHHHh
Q 024447 218 EKIKELVSI-GFEK-ELVAEALRRNENDSQKALDD 250 (267)
Q Consensus 218 e~v~~L~~M-GF~~-~~A~~ALr~t~ndve~Aldl 250 (267)
+.|.+..++ |-+. ..|+.=|..++.|++.|+..
T Consensus 7 e~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~~ 41 (45)
T 3e21_A 7 MILADFQACTGIENIDEAITLLEQNNWDLVAAING 41 (45)
T ss_dssp HHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHTT
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHHH
Confidence 557777777 8886 99999999999999999973
No 292
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=50.77 E-value=47 Score=24.38 Aligned_cols=66 Identities=9% Similarity=-0.050 Sum_probs=39.7
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHH
Q 024447 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRK 77 (267)
Q Consensus 5 ~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ 77 (267)
..+.-.|...++.++|++|+..+-.|=+...... ..--+++-...-+..||..+++ +..|.+.+.+
T Consensus 43 ~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~~a~~~~~lg~~~~~~~~---~~~A~~~~~k 108 (127)
T 4gcn_A 43 TFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETR----ADYKLIAKAMSRAGNAFQKQND---LSLAVQWFHR 108 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT----CCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccc----hhhHHHHHHHHHHHHHHHHcCC---HHHHHHHHHH
Confidence 3566789999999999999998887754432221 1112233344455666666554 4455444443
No 293
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=49.92 E-value=20 Score=30.93 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHc
Q 024447 217 IEKIKELVSIGFEKELVAEALRRN 240 (267)
Q Consensus 217 ~e~v~~L~~MGF~~~~A~~ALr~t 240 (267)
.+.+..|+.+||++..|.+|++..
T Consensus 165 ~ea~~AL~~LGy~~~ea~~av~~~ 188 (212)
T 2ztd_A 165 SPVVEALVGLGFAAKQAEEATDTV 188 (212)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHH
Confidence 578999999999999999999764
No 294
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=55.23 E-value=3.5 Score=33.21 Aligned_cols=36 Identities=28% Similarity=0.454 Sum_probs=29.8
Q ss_pred HHHHHHhC-CCC-HHHHHHHHHHcCCCHHHHHHhccCC
Q 024447 219 KIKELVSI-GFE-KELVAEALRRNENDSQKALDDLTNP 254 (267)
Q Consensus 219 ~v~~L~~M-GF~-~~~A~~ALr~t~ndve~AldlL~~p 254 (267)
.+++|.+. |.. ...-..||+.++||+..|+.+|+.-
T Consensus 21 lLNQLrEITGIqD~~~L~~ALkAsnGdl~qAV~~LT~~ 58 (129)
T 2lva_A 21 LLNQLREITGIQDPSFLHEALKASNGDITQAVSLLTDE 58 (129)
Confidence 57778777 776 5577899999999999999998753
No 295
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=49.02 E-value=70 Score=24.80 Aligned_cols=60 Identities=18% Similarity=-0.014 Sum_probs=41.7
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHH
Q 024447 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKA 78 (267)
Q Consensus 5 ~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~a 78 (267)
..+...|...++.++|++|+..+-.|=+.. + +.+-..+-+..||+.+++ .++|..-+.+|
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~----p-------~~~~~~~~lg~~~~~~~~---~~~A~~~~~~a 148 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID----K-------NNVKALYKLGVANMYFGF---LEEAKENLYKA 148 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----T-------TCHHHHHHHHHHHHHHTC---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----c-------ccHHHHHHHHHHHHHccc---HHHHHHHHHHH
Confidence 567788999999999999999988776542 2 223345667888888876 34444444443
No 296
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=48.93 E-value=1.5e+02 Score=26.70 Aligned_cols=59 Identities=12% Similarity=-0.009 Sum_probs=36.6
Q ss_pred hhHhHHHHHH----hhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCC-CCCHHHHHHHHHHH
Q 024447 7 LHANAKSLIK----RHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRD-ISWLSEAGIRLRKA 78 (267)
Q Consensus 7 l~ek~r~~~~----~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~-~~~l~dA~~rL~~a 78 (267)
...-|..... .++|+.|+..+..|=+. +.+--+..+.++|+.=.. ....+.|...+.++
T Consensus 42 ~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-------------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a 105 (490)
T 2xm6_A 42 QLELGYRYFQGNETTKDLTQAMDWFRRAAEQ-------------GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKA 105 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 3445666676 78999999988877331 345567778889987222 22344454444443
No 297
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=48.75 E-value=23 Score=32.05 Aligned_cols=19 Identities=32% Similarity=0.487 Sum_probs=9.9
Q ss_pred HHHHHhCCCCHHHHHHHHH
Q 024447 220 IKELVSIGFEKELVAEALR 238 (267)
Q Consensus 220 v~~L~~MGF~~~~A~~ALr 238 (267)
|.-|.++|++.+...+.+.
T Consensus 127 v~fL~~lGl~~~~i~~ll~ 145 (343)
T 3mva_O 127 IKFLYSVGLTRKCLCRLLT 145 (343)
T ss_dssp HHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHH
Confidence 4445555555555555544
No 298
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=46.83 E-value=93 Score=23.66 Aligned_cols=57 Identities=14% Similarity=0.165 Sum_probs=39.5
Q ss_pred hhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHH
Q 024447 7 LHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRK 77 (267)
Q Consensus 7 l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ 77 (267)
+.++|..+++.++|++|+..+-.|=+... +.+-....+..+|+..++ .++|..-+.+
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P-----------~~~~a~~~la~~~~~~g~---~~~A~~~~~~ 65 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQ-----------SRGDVKLAKADCLLETKQ---FELAQELLAT 65 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHH-----------TSHHHHHHHHHHHHHTTC---HHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCC-----------CcHHHHHHHHHHHHHCCC---HHHHHHHHHH
Confidence 56889999999999999998876644332 334556677888887654 4555544444
No 299
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=46.37 E-value=1.1e+02 Score=27.41 Aligned_cols=15 Identities=27% Similarity=0.317 Sum_probs=9.9
Q ss_pred hCCCCHHHHHHHHHH
Q 024447 225 SIGFEKELVAEALRR 239 (267)
Q Consensus 225 ~MGF~~~~A~~ALr~ 239 (267)
++||+++++..++++
T Consensus 249 ~lG~s~~ev~~~v~~ 263 (343)
T 3mva_O 249 SLGCTEEEVQKFVLS 263 (343)
T ss_dssp TTTCCHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHHh
Confidence 567777766666654
No 300
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=45.78 E-value=21 Score=28.44 Aligned_cols=34 Identities=18% Similarity=0.259 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHHHHhCCC---HHHHHHHHHhhhhhhh
Q 024447 154 MGFKEQDAKRALRICSQD---VGSAIDFLVEEKAKRV 187 (267)
Q Consensus 154 MGF~~~~Ar~ALr~~~gd---ve~A~~wL~~~~~d~~ 187 (267)
|+|+++.-..-|..-++. |..+..|++.|+....
T Consensus 1 m~fs~~~l~~kL~~L~~sq~sIq~~s~W~l~h~~~a~ 37 (142)
T 2km4_A 1 MAFSSEQFTTKLNTLEDSQESISSASKWLLLQYRDAP 37 (142)
T ss_dssp -CCCHHHHHHHHHTCCSCHHHHHHHHHHHHTCGGGHH
T ss_pred CCCCHHHHHHHHHhccccHHHHHHHHHHHHHhhhhHH
Confidence 899999999999887764 9999999999987543
No 301
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=45.33 E-value=92 Score=26.00 Aligned_cols=50 Identities=16% Similarity=0.054 Sum_probs=26.7
Q ss_pred HHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhh--HH-HHHHHhCCCCCH
Q 024447 13 SLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQID--MV-WCYFMLRDISWL 68 (267)
Q Consensus 13 ~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ld--iv-wcy~~l~~~~~l 68 (267)
-+|+-|+|+.|+.+.-+.| ++..-+.+=..|+-+-+ || =||.+++|++.|
T Consensus 14 LAL~lg~l~~A~e~a~~l~------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L 66 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKLN------DSITWERLIQEALAQGNASLAEMIYQTQHSFDKL 66 (177)
T ss_dssp HHHHTTCHHHHHHHHHHHC------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCCHHHHHHHHHHhC------CHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHH
Confidence 3678899999998865432 22333333344444422 22 255555555444
No 302
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=43.78 E-value=64 Score=28.91 Aligned_cols=62 Identities=18% Similarity=0.140 Sum_probs=43.5
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 024447 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKARE 80 (267)
Q Consensus 5 ~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~ 80 (267)
..+...|..+++.++|++|+..+-.|=+. ++ +.+-...-+.+||+.+++ ..+|...+.+|-+
T Consensus 274 ~~~~nla~~~~~~g~~~~A~~~~~~al~~----~p-------~~~~a~~~lg~~~~~~g~---~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 274 SCVLNIGACKLKMSDWQGAVDSCLEALEI----DP-------SNTKALYRRAQGWQGLKE---YDQALADLKKAQE 335 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTT----CT-------TCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHh----Cc-------hhHHHHHHHHHHHHHccC---HHHHHHHHHHHHH
Confidence 45677899999999999999998776542 22 234455678889998875 4556555555543
No 303
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=49.56 E-value=4.9 Score=32.33 Aligned_cols=39 Identities=23% Similarity=0.408 Sum_probs=31.0
Q ss_pred hHhhHHhC-CCC-HHHHHHHHHHhCCCHHHHHHHHHhhhhh
Q 024447 147 SLSLVMSM-GFK-EQDAKRALRICSQDVGSAIDFLVEEKAK 185 (267)
Q Consensus 147 ~l~~L~~M-GF~-~~~Ar~ALr~~~gdve~A~~wL~~~~~d 185 (267)
.|++|.+. |.+ ...-..||++++||+..||.+|.+.+..
T Consensus 21 lLNQLrEITGIqD~~~L~~ALkAsnGdl~qAV~~LT~~~~~ 61 (129)
T 2lva_A 21 LLNQLREITGIQDPSFLHEALKASNGDITQAVSLLTDERVK 61 (129)
Confidence 56666665 665 6667889999999999999999887544
No 304
>3bq3_A Defective in cullin neddylation protein 1; ubiquitin, ubiquitination,SCF,cullin, E3 E2, cell cycle, protein degradation, ligase; 1.90A {Saccharomyces cerevisiae} PDB: 2is9_A* 3o2p_A 3o6b_A 3tdi_B 2l4e_A 2l4f_A
Probab=43.00 E-value=14 Score=33.05 Aligned_cols=39 Identities=21% Similarity=0.256 Sum_probs=32.6
Q ss_pred HHHHHHHhC-CCCHHHHHHHHHHcCCCHHHHHH-hccCCCc
Q 024447 218 EKIKELVSI-GFEKELVAEALRRNENDSQKALD-DLTNPES 256 (267)
Q Consensus 218 e~v~~L~~M-GF~~~~A~~ALr~t~ndve~Ald-lL~~pd~ 256 (267)
+.|.+.+++ |-++..|+.-|..++.|++.|++ .+.+|+.
T Consensus 17 ~~i~qF~~iTg~~~~~A~~~L~~~~WdLe~Al~~ff~~~~~ 57 (270)
T 3bq3_A 17 EAIESFTSLTKCDPKVSRKYLQRNHWNINYALNDYYDKEIG 57 (270)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCccc
Confidence 457777666 89999999999999999999999 6666653
No 305
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=42.45 E-value=8.3 Score=28.33 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=22.3
Q ss_pred CCHHHHHHHHHHcCCCHHHHHHhcc
Q 024447 228 FEKELVAEALRRNENDSQKALDDLT 252 (267)
Q Consensus 228 F~~~~A~~ALr~t~ndve~AldlL~ 252 (267)
|++.....||+.++||+.+|+..|-
T Consensus 51 ~E~~~i~~aL~~~~gn~~~aA~~LG 75 (91)
T 1ntc_A 51 LERTLLTTALRHTQGHKQEAARLLG 75 (91)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHC
Confidence 6788899999999999999999764
No 306
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=41.60 E-value=13 Score=25.21 Aligned_cols=24 Identities=13% Similarity=0.188 Sum_probs=21.1
Q ss_pred CCHHHHHHHHHHcCCCHHHHHHhcc
Q 024447 228 FEKELVAEALRRNENDSQKALDDLT 252 (267)
Q Consensus 228 F~~~~A~~ALr~t~ndve~AldlL~ 252 (267)
|++.....||+.+ ||+.+|+..|-
T Consensus 21 ~Er~~I~~aL~~~-gn~~~aA~~LG 44 (61)
T 1g2h_A 21 YEAQVLKLFYAEY-PSTRKLAQRLG 44 (61)
T ss_dssp HHHHHHHHHHHHS-CSHHHHHHHTT
T ss_pred HHHHHHHHHHHHh-CCHHHHHHHhC
Confidence 6788899999999 99999999764
No 307
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=41.14 E-value=3.4e+02 Score=30.31 Aligned_cols=131 Identities=16% Similarity=0.142 Sum_probs=71.9
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH-
Q 024447 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIER- 84 (267)
Q Consensus 6 ~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~r- 84 (267)
..+..||+..+.++|++|......|| .-||| .+++.||..+. ..++|-+.|..|++.-+.
T Consensus 1107 vWsqLAKAql~~G~~kEAIdsYiKAd------------D~say----~eVa~~~~~lG---kyEEAIeyL~mArk~~~e~ 1167 (1630)
T 1xi4_A 1107 VWSQLAKAQLQKGMVKEAIDSYIKAD------------DPSSY----MEVVQAANTSG---NWEELVKYLQMARKKARES 1167 (1630)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcC------------ChHHH----HHHHHHHHHcC---CHHHHHHHHHHHHhhcccc
Confidence 35577888888888888888776652 12222 23566665543 557777777776643211
Q ss_pred --------HhC--CCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHhhhccCCCChhhHhhHHhC
Q 024447 85 --------AHG--KDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSM 154 (267)
Q Consensus 85 --------~yG--~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~~~~~l~vd~~~l~~L~~M 154 (267)
+|- ..++.+.....+...+ .++ + -|-..|..|+.++|...+.++.. -......+.-+
T Consensus 1168 ~Idt~LafaYAKl~rleele~fI~~~n~a-d~~-~----iGd~le~eg~YeeA~~~Y~kA~n-------y~rLA~tLvkL 1234 (1630)
T 1xi4_A 1168 YVETELIFALAKTNRLAELEEFINGPNNA-HIQ-Q----VGDRCYDEKMYDAAKLLYNNVSN-------FGRLASTLVHL 1234 (1630)
T ss_pred cccHHHHHHHHhhcCHHHHHHHHhCCCHH-HHH-H----HHHHHHhcCCHHHHHHHHHhhhH-------HHHHHHHHHHh
Confidence 110 1111122211222221 111 1 25557788889999888887642 12335567777
Q ss_pred CCCHHHHHHHHHHhC
Q 024447 155 GFKEQDAKRALRICS 169 (267)
Q Consensus 155 GF~~~~Ar~ALr~~~ 169 (267)
|- -+.|..+.+.++
T Consensus 1235 ge-~q~AIEaarKA~ 1248 (1630)
T 1xi4_A 1235 GE-YQAAVDGARKAN 1248 (1630)
T ss_pred CC-HHHHHHHHHHhC
Confidence 74 566666666554
No 308
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=41.14 E-value=32 Score=27.00 Aligned_cols=46 Identities=20% Similarity=0.204 Sum_probs=33.8
Q ss_pred HHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHH
Q 024447 11 AKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRL 75 (267)
Q Consensus 11 ~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL 75 (267)
--++|.||+|.+|+.++- ..|-|+| |-|--+|=--+...+.+..||
T Consensus 46 ~sSLmNrG~Yq~Al~l~~------~~c~pdl-------------epw~ALce~rlGl~s~le~rL 91 (115)
T 2uwj_G 46 ISSLANQGRYQEALAFAH------GNPWPAL-------------EPWFALCEWHLGLGAALDRRL 91 (115)
T ss_dssp HHHHHHTTCHHHHHGGGT------TCCCGGG-------------HHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHcchhHHHHHHhcC------CCCCchH-------------HHHHHHHHHhcccHHHHHHHH
Confidence 347899999999998764 4676655 457777766666777777776
No 309
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=40.90 E-value=17 Score=26.77 Aligned_cols=37 Identities=22% Similarity=0.332 Sum_probs=27.5
Q ss_pred hHhhHHhC-CC-CHHHHHHHHHHhCCCHHHHHHHHHhhh
Q 024447 147 SLSLVMSM-GF-KEQDAKRALRICSQDVGSAIDFLVEEK 183 (267)
Q Consensus 147 ~l~~L~~M-GF-~~~~Ar~ALr~~~gdve~A~~wL~~~~ 183 (267)
.|++|.+. |. +..--..||++.+||+..||-+|.+.+
T Consensus 27 lLnQLrEITGiqD~~~L~~ALkas~Gdl~~AV~~LT~~~ 65 (80)
T 1vdl_A 27 FLNQLREITGINDAQILQQALKDSNGNLELAVAFLTAKN 65 (80)
T ss_dssp HHHHHHHHSCCCCHHHHHHHHHHHTSCHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCcHHHHHHHHHhccCCHHHHHHHHhccc
Confidence 55666654 43 344456789999999999999998775
No 310
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=39.81 E-value=51 Score=24.56 Aligned_cols=36 Identities=17% Similarity=0.206 Sum_probs=29.0
Q ss_pred HhhHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHhhh
Q 024447 148 LSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEEK 183 (267)
Q Consensus 148 l~~L~~MGF~~~~Ar~ALr~~~gdve~A~~wL~~~~ 183 (267)
|...++=-.|+..-+.|.-.++=|+++|+++|++..
T Consensus 41 iR~VlGdsV~e~~Lv~ailk~dfD~ekALd~vL~~~ 76 (83)
T 1ufz_A 41 MREVLGDAVPDDILTEAILKHKFDVQKALSVVLEQD 76 (83)
T ss_dssp HHHHTTTTSCHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHcccCCHHHHHHHHHHhcCCHHHHHHHHHhcc
Confidence 333444458999999999999999999999998864
No 311
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=39.66 E-value=14 Score=27.90 Aligned_cols=25 Identities=12% Similarity=0.134 Sum_probs=22.2
Q ss_pred CCHHHHHHHHHHcCCCHHHHHHhcc
Q 024447 228 FEKELVAEALRRNENDSQKALDDLT 252 (267)
Q Consensus 228 F~~~~A~~ALr~t~ndve~AldlL~ 252 (267)
|++.....||+.++||+.+|+..|-
T Consensus 58 ~Er~~I~~aL~~~~gn~~~AA~~LG 82 (98)
T 1eto_A 58 VEQPLLDMVMQYTLGNQTRAALMMG 82 (98)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHhC
Confidence 5788899999999999999999764
No 312
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=38.68 E-value=2e+02 Score=25.88 Aligned_cols=113 Identities=12% Similarity=0.059 Sum_probs=68.6
Q ss_pred HHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhCCCH
Q 024447 11 AKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERAHGKDS 90 (267)
Q Consensus 11 ~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~r~yG~~~ 90 (267)
....+++++|++|+++|..+=..|...+- .-...| .|++-+|+ |-. ..+..-++...||. ++|...=...+
T Consensus 40 ~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q-~~sa~D-La~llvev---~~~-~~~~~~~~~~~rl~---~l~~~~p~~~~ 110 (312)
T 2wpv_A 40 ANRYVRSKSYEHAIELISQGALSFLKAKQ-GGSGTD-LIFYLLEV---YDL-AEVKVDDISVARLV---RLIAELDPSEP 110 (312)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHH-HHHHHHHH---HHH-TTCCCSHHHHHHHH---HHHTTCCTTCT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHCCC-cchHHH-HHHHHHHH---HHH-cCCCCCHHHHHHHH---HHHHHCCCCCc
Confidence 34567779999999999988877765532 222222 34444443 332 34555455555555 45544333455
Q ss_pred HHHHHHH------cCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhH
Q 024447 91 SRVRLLQ------AGRHPELALHLRMELLEGVAAYHSGQFDKARNALT 132 (267)
Q Consensus 91 ~rl~~lk------g~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~ 132 (267)
+|..-|+ ...+....=...||.+=|.+.+..|+..+|..|+-
T Consensus 111 ~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 111 NLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp THHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 6665554 11112123346788888999999999999999874
No 313
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=38.32 E-value=63 Score=20.96 Aligned_cols=28 Identities=18% Similarity=0.151 Sum_probs=23.6
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhh
Q 024447 6 MLHANAKSLIKRHMYKDALEVLTMGEEA 33 (267)
Q Consensus 6 ~l~ek~r~~~~~~~y~~al~~ll~ad~~ 33 (267)
.+...|...++.++|++|+..+-.|=+.
T Consensus 45 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 45 AWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4567899999999999999998887654
No 314
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=37.08 E-value=2.4e+02 Score=25.63 Aligned_cols=95 Identities=13% Similarity=0.119 Sum_probs=52.6
Q ss_pred hHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhC
Q 024447 8 HANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERAHG 87 (267)
Q Consensus 8 ~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~r~yG 87 (267)
...|....+.++|++|..++-.|=+. ++. |.+ .+|+.+.- +..-..++..|++.|.+...
T Consensus 325 ~~~~~~~~~~g~~~~A~~~~~~al~~----~p~------~~~-----~~~~~~~~-----~~~~~~~~~~A~~~~~~Al~ 384 (530)
T 2ooe_A 325 FAYADYEESRMKYEKVHSIYNRLLAI----EDI------DPT-----LVYIQYMK-----FARRAEGIKSGRMIFKKARE 384 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHS----SSS------CHH-----HHHHHHHH-----HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhCc----ccc------Cch-----HHHHHHHH-----HHHHhcCHHHHHHHHHHHHh
Confidence 44556666777888887776554321 221 222 36665431 11224567788888888875
Q ss_pred CCHHHHHHHHcCCcchhhHHHHHHHHHHhhhh-ccCCchhHhhhhHhhHhh
Q 024447 88 KDSSRVRLLQAGRHPELALHLRMELLEGVAAY-HSGQFDKARNALTSAQAK 137 (267)
Q Consensus 88 ~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~-h~g~~d~A~~~l~~a~~~ 137 (267)
..+. . ..+++-.+++.| +.|+.++|...++.+-..
T Consensus 385 ~~~~---------~------~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~ 420 (530)
T 2ooe_A 385 DART---------R------HHVYVTAALMEYYCSKDKSVAFKIFELGLKK 420 (530)
T ss_dssp CTTC---------C------THHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred ccCC---------c------hHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Confidence 4331 1 111222233433 478899999888876443
No 315
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=36.46 E-value=1.1e+02 Score=25.71 Aligned_cols=64 Identities=17% Similarity=0.095 Sum_probs=45.7
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 024447 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGI 82 (267)
Q Consensus 5 ~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f 82 (267)
..+...|..+++.++|++|+..+-.|=+. +| +++....-+.++|+.+++ .++|..-+.+|-+..
T Consensus 39 ~~~~~la~~~~~~~~~~~A~~~~~~al~~----~p-------~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~l~ 102 (281)
T 2c2l_A 39 VYYTNRALCYLKMQQPEQALADCRRALEL----DG-------QSVKAHFFLGQCQLEMES---YDEAIANLQRAYSLA 102 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTS----CT-------TCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh----CC-------CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhC
Confidence 34667899999999999999988776443 22 334455677899998874 667777666665544
No 316
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=36.17 E-value=65 Score=26.02 Aligned_cols=22 Identities=23% Similarity=0.237 Sum_probs=18.7
Q ss_pred HHHHHHHhCCCCHHHHHHHHHH
Q 024447 218 EKIKELVSIGFEKELVAEALRR 239 (267)
Q Consensus 218 e~v~~L~~MGF~~~~A~~ALr~ 239 (267)
..+..|+.=||+.+.+..+|+.
T Consensus 137 K~~~~L~rrGF~~~~I~~~l~~ 158 (162)
T 3dfg_A 137 KAADLLARRGFDGNSIRLATRF 158 (162)
T ss_dssp HHHHHHHHTTCCHHHHHHHTTC
T ss_pred HHHHHHHHCCCCHHHHHHHHhc
Confidence 4567899999999999999764
No 317
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=35.94 E-value=1.4e+02 Score=27.57 Aligned_cols=105 Identities=13% Similarity=0.053 Sum_probs=68.8
Q ss_pred hhhhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 024447 3 MGLMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGI 82 (267)
Q Consensus 3 ~~~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f 82 (267)
+..+...+|+=..+.|+|+.|+.++-.+=+ .|.+ .+...=+.+-++=+|+..+|. .-|...+.+|...+
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~---~~~~-----~~~kid~~l~~irl~l~~~d~---~~~~~~~~ka~~~~ 198 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLS---KAIS-----TGAKIDVMLTIARLGFFYNDQ---LYVKEKLEAVNSMI 198 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHH---HHTC-----CCSHHHHHHHHHHHHHHHTCH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hcCC-----hHHHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHhh
Confidence 345778899999999999999999977643 3432 122212334444456666654 45666677766544
Q ss_pred HHHhCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhh
Q 024447 83 ERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSA 134 (267)
Q Consensus 83 ~r~yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a 134 (267)
.. |.++ ....||..-+|++..+.+++.+|..+|-.+
T Consensus 199 ~~--~~d~--------------~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 199 EK--GGDW--------------ERRNRYKTYYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp TT--CCCT--------------HHHHHHHHHHHHGGGGTSCHHHHHHHHHHH
T ss_pred hc--CCCH--------------HHHHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 32 2222 223477788899999999999999877544
No 318
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=35.71 E-value=32 Score=29.75 Aligned_cols=37 Identities=14% Similarity=0.307 Sum_probs=24.3
Q ss_pred hhHhhHHhCCCCHHHHHHHHHHhC----CCHH---HHHHHHHhh
Q 024447 146 ESLSLVMSMGFKEQDAKRALRICS----QDVG---SAIDFLVEE 182 (267)
Q Consensus 146 ~~l~~L~~MGF~~~~Ar~ALr~~~----gdve---~A~~wL~~~ 182 (267)
..+.-|.++||+..+-.+.+..+- -+++ ..++|+.+.
T Consensus 43 ~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~l~p~v~~L~~~ 86 (270)
T 3m66_A 43 QMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLENLKTRVAYLHSK 86 (270)
T ss_dssp HHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHHHHHHHHHHHHc
Confidence 467777888888888777776654 2433 555666554
No 319
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=35.11 E-value=44 Score=32.00 Aligned_cols=129 Identities=16% Similarity=0.140 Sum_probs=28.5
Q ss_pred hHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHH----
Q 024447 8 HANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIE---- 83 (267)
Q Consensus 8 ~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~---- 83 (267)
...|++.++++++++|...+..++ |+. --..|+.++. .....++|...|+.+++..+
T Consensus 36 s~La~A~l~~g~~~eAIdsfika~---------------D~~-~y~~V~~~ae---~~g~~EeAi~yl~~ark~~~~~~i 96 (449)
T 1b89_A 36 SQLAKAQLQKGMVKEAIDSYIKAD---------------DPS-SYMEVVQAAN---TSGNWEELVKYLQMARKKARESYV 96 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHcCC---------------CHH-HHHHHHHHHH---hCCCHHHHHHHHHHHHHhCccchh
Confidence 356788888888888887775432 222 1233444443 35566777777777765311
Q ss_pred H-----HhCC--CHHHHHHHH-c-CCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhHhhhccCCCChhhHhhHHhC
Q 024447 84 R-----AHGK--DSSRVRLLQ-A-GRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSM 154 (267)
Q Consensus 84 r-----~yG~--~~~rl~~lk-g-~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~~~~~~l~vd~~~l~~L~~M 154 (267)
. +|+. +..++..+- + +...-..+ |-..|+.|..++|..++.+++. -....+.|.-+
T Consensus 97 ~~~Li~~Y~Klg~l~e~e~f~~~pn~~a~~~I--------Gd~~~~~g~yeeA~~~Y~~a~n-------~~~LA~~L~~L 161 (449)
T 1b89_A 97 ETELIFALAKTNRLAELEEFINGPNNAHIQQV--------GDRCYDEKMYDAAKLLYNNVSN-------FGRLASTLVHL 161 (449)
T ss_dssp ------------CHHHHTTTTTCC------------------------CTTTHHHHHHHTTC-------HHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHcCCcHHHHHHH--------HHHHHHcCCHHHHHHHHHHhhh-------HHHHHHHHHHh
Confidence 1 3311 222222222 1 12222333 4558899999999999886631 22345577777
Q ss_pred CCCHHHHHHHHHHhCCCH
Q 024447 155 GFKEQDAKRALRICSQDV 172 (267)
Q Consensus 155 GF~~~~Ar~ALr~~~gdv 172 (267)
|- -++|..|-+.++ ++
T Consensus 162 g~-yq~AVea~~KA~-~~ 177 (449)
T 1b89_A 162 GE-YQAAVDGARKAN-ST 177 (449)
T ss_dssp TC-HHHHHHHHHHHT-CH
T ss_pred cc-HHHHHHHHHHcC-Cc
Confidence 73 344666666554 55
No 320
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=34.46 E-value=78 Score=21.97 Aligned_cols=57 Identities=11% Similarity=0.053 Sum_probs=36.1
Q ss_pred HHHHhhhhccCCchhHhhhhHhhHhhhccCCCChhhHhhHHhCCCCHHHHHHHHHHhCCCHHHHHHHHHhh
Q 024447 112 LLEGVAAYHSGQFDKARNALTSAQAKFFQLQVPDESLSLVMSMGFKEQDAKRALRICSQDVGSAIDFLVEE 182 (267)
Q Consensus 112 lLqg~v~~h~g~~d~A~~~l~~a~~~~~~l~vd~~~l~~L~~MGF~~~~Ar~ALr~~~gdve~A~~wL~~~ 182 (267)
..-|.+.+..|+.++|...+..+-.. ++........+| -+....|+.+.|+.++..-
T Consensus 11 ~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~a~~~lg--------~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 11 YALAQEHLKHDNASRALALFEELVET------DPDYVGTYYHLG--------KLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH------STTCTHHHHHHH--------HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh------CCCcHHHHHHHH--------HHHHHcCCHHHHHHHHHHH
Confidence 34588899999999999999876554 222222222222 1233467889998877543
No 321
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=32.95 E-value=34 Score=25.19 Aligned_cols=36 Identities=22% Similarity=0.362 Sum_probs=28.1
Q ss_pred HHHHHHhC-CCCHH-HHHHHHHHcCCCHHHHHHhccCC
Q 024447 219 KIKELVSI-GFEKE-LVAEALRRNENDSQKALDDLTNP 254 (267)
Q Consensus 219 ~v~~L~~M-GF~~~-~A~~ALr~t~ndve~AldlL~~p 254 (267)
.+++|.+. |...- .--.||+.++||+..|+-+|++-
T Consensus 27 lLnQLrEITGiqD~~~L~~ALkas~Gdl~~AV~~LT~~ 64 (80)
T 1vdl_A 27 FLNQLREITGINDAQILQQALKDSNGNLELAVAFLTAK 64 (80)
T ss_dssp HHHHHHHHSCCCCHHHHHHHHHHHTSCHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHhccCCHHHHHHHHhcc
Confidence 56777776 65444 56789999999999999988753
No 322
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=32.77 E-value=92 Score=22.40 Aligned_cols=30 Identities=13% Similarity=0.102 Sum_probs=25.3
Q ss_pred CCHHHHHHHHhCCCCHHHHHHHHHHcCCCH
Q 024447 215 VDIEKIKELVSIGFEKELVAEALRRNENDS 244 (267)
Q Consensus 215 vd~e~v~~L~~MGF~~~~A~~ALr~t~ndv 244 (267)
+-..++.-|.+=|.+.+...+||++.+.+.
T Consensus 34 p~~~K~~FL~sKGLt~eEI~~Al~ra~~~~ 63 (70)
T 2w84_A 34 PLATRRAFLKKKGLTDEEIDMAFQQSGTAA 63 (70)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHHHHTCCC
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHHccCCC
Confidence 344678999999999999999999987653
No 323
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=32.66 E-value=9.3 Score=32.45 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=0.0
Q ss_pred hhhHhhHHhCCCCHHHHHHHHHHh
Q 024447 145 DESLSLVMSMGFKEQDAKRALRIC 168 (267)
Q Consensus 145 ~~~l~~L~~MGF~~~~Ar~ALr~~ 168 (267)
++.++.|+.+||++.+|.+|+...
T Consensus 147 ~ea~~AL~~LGy~~~ea~~av~~~ 170 (191)
T 1ixr_A 147 EEAVMALAALGFKEAQARAVVLDL 170 (191)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHH
Confidence 578999999999999999998764
No 324
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=31.65 E-value=35 Score=26.12 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=21.0
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhh
Q 024447 6 MLHANAKSLIKRHMYKDALEVLTMG 30 (267)
Q Consensus 6 ~l~ek~r~~~~~~~y~~al~~ll~a 30 (267)
.+-.+||.+.+-++|.+|+.+|-++
T Consensus 55 ~~i~eak~~y~~~ny~ea~~l~~k~ 79 (106)
T 2vkj_A 55 SLIAEGKDLFETANYGEALVFFEKA 79 (106)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHH
Confidence 4567899999999999999988654
No 325
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=31.40 E-value=26 Score=33.57 Aligned_cols=47 Identities=4% Similarity=0.147 Sum_probs=0.4
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCC
Q 024447 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRD 64 (267)
Q Consensus 6 ~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~ 64 (267)
++.+.|+++...++|++|..+|.+|=+. ..+ +.+.-.+|-||-++.+
T Consensus 63 ~y~~V~~~ae~~g~~EeAi~yl~~ark~-----------~~~-~~i~~~Li~~Y~Klg~ 109 (449)
T 1b89_A 63 SYMEVVQAANTSGNWEELVKYLQMARKK-----------ARE-SYVETELIFALAKTNR 109 (449)
T ss_dssp ----------------------------------------------------------C
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHh-----------Ccc-chhHHHHHHHHHHhCC
Confidence 5778899999999999999988776542 223 4455668889988743
No 326
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=31.35 E-value=1.3e+02 Score=27.81 Aligned_cols=61 Identities=13% Similarity=-0.024 Sum_probs=42.6
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHH
Q 024447 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAR 79 (267)
Q Consensus 5 ~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae 79 (267)
..+...|...++.++|++|+..+..|=+. +| +++-...-+.++|+.+++ .++|..-+.+|-
T Consensus 41 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l----~p-------~~~~~~~~lg~~~~~~g~---~~eA~~~~~~al 101 (477)
T 1wao_1 41 IYYGNRSLAYLRTECYGYALGDATRAIEL----DK-------KYIKGYYRRAASNMALGK---FRAALRDYETVV 101 (477)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHS----CT-------TCHHHHHHHHHHHHHHTC---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh----CC-------CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHH
Confidence 35677899999999999999999887554 22 334445567888988764 455555555443
No 327
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=31.32 E-value=2.3e+02 Score=23.66 Aligned_cols=59 Identities=17% Similarity=0.118 Sum_probs=39.8
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHH
Q 024447 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKA 78 (267)
Q Consensus 6 ~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~a 78 (267)
.+++.|..+++.++|++|+.++-.|=+.... .+-..+.+.-+|...+ ..++|...+.++
T Consensus 119 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-----------~~~a~~~la~~~~~~g---~~~~A~~~l~~~ 177 (287)
T 3qou_A 119 LXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-----------NGEIGLLLAETLIALN---RSEDAEAVLXTI 177 (287)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-----------CHHHHHHHHHHHHHTT---CHHHHHHHHTTS
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-----------chhHHHHHHHHHHHCC---CHHHHHHHHHhC
Confidence 4678999999999999999988776443332 2334455666777665 455666555554
No 328
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=31.10 E-value=74 Score=27.84 Aligned_cols=63 Identities=17% Similarity=0.111 Sum_probs=42.2
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Q 024447 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERA 85 (267)
Q Consensus 6 ~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~r~ 85 (267)
.++..|..+++.++|++|+..+-.|=+.. .+++-...-+.+||+.+++ ...|...|++.
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-----------p~~~~a~~~lg~a~~~~g~----------~~~A~~~l~~a 290 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE-----------EKNPKALFRRGKAKAELGQ----------MDSARDDFRKA 290 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHC-----------TTCHHHHHHHHHHHHTTTC----------HHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------CCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHH
Confidence 56678999999999999999887664432 2334455678888888765 34555555555
Q ss_pred hCCC
Q 024447 86 HGKD 89 (267)
Q Consensus 86 yG~~ 89 (267)
.-.+
T Consensus 291 l~l~ 294 (338)
T 2if4_A 291 QKYA 294 (338)
T ss_dssp TC--
T ss_pred HHHC
Confidence 5333
No 329
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=30.81 E-value=81 Score=35.05 Aligned_cols=21 Identities=14% Similarity=0.354 Sum_probs=16.5
Q ss_pred HHHHHHhhchHHHHHHHHhhh
Q 024447 11 AKSLIKRHMYKDALEVLTMGE 31 (267)
Q Consensus 11 ~r~~~~~~~y~~al~~ll~ad 31 (267)
|..++..++|+||..++-.++
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~ 1076 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFD 1076 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcC
Confidence 777888888888888777664
No 330
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=30.55 E-value=1.2e+02 Score=29.40 Aligned_cols=51 Identities=8% Similarity=-0.036 Sum_probs=39.3
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCC
Q 024447 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISW 67 (267)
Q Consensus 6 ~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~ 67 (267)
.++..|..+++.++|++|+..+-.|=+. --+++-....+..||+.+++...
T Consensus 469 a~~~lg~~~~~~g~~~~A~~~~~~al~l-----------~P~~~~~~~~lg~~~~~~g~~~~ 519 (681)
T 2pzi_A 469 LVWYRAVAELLTGDYDSATKHFTEVLDT-----------FPGELAPKLALAATAELAGNTDE 519 (681)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------STTCSHHHHHHHHHHHHHTCCCT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------CCCChHHHHHHHHHHHHcCChHH
Confidence 5678899999999999999988765443 22345555678889999998876
No 331
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=30.48 E-value=21 Score=24.65 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=24.3
Q ss_pred CCCHHHHHHHHHHcCCCHHHHHHhccC
Q 024447 227 GFEKELVAEALRRNENDSQKALDDLTN 253 (267)
Q Consensus 227 GF~~~~A~~ALr~t~ndve~AldlL~~ 253 (267)
|-..+-+.+.|..++-|.++|+..|..
T Consensus 19 gmn~~~s~~cL~~~~Wd~~~A~~~F~~ 45 (59)
T 1oai_A 19 GMNLEWSQKCLQDNNWDYTRSAQAFTH 45 (59)
T ss_dssp CCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 778899999999999999999997654
No 332
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=30.46 E-value=53 Score=23.59 Aligned_cols=28 Identities=14% Similarity=-0.019 Sum_probs=21.3
Q ss_pred HHHhhhhccCCchhHhhhhHhhHhhhcc
Q 024447 113 LEGVAAYHSGQFDKARNALTSAQAKFFQ 140 (267)
Q Consensus 113 Lqg~v~~h~g~~d~A~~~l~~a~~~~~~ 140 (267)
+-|.++|.+|++++|.......-+..+.
T Consensus 48 ~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 48 LIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3399999999999999988866544333
No 333
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=29.74 E-value=1.7e+02 Score=21.63 Aligned_cols=60 Identities=10% Similarity=-0.006 Sum_probs=40.8
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHH
Q 024447 5 LMLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKA 78 (267)
Q Consensus 5 ~~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~a 78 (267)
..+.-.|...++.++|++|+..+-.|=+. + -+++-.-.-+..||+.+++ ..+|..-+.+|
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~----~-------p~~~~a~~~~g~~~~~~g~---~~~A~~~~~~a 123 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKR----E-------ETNEKALFRRAKARIAAWK---LDEAEEDLKLL 123 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH----S-------TTCHHHHHHHHHHHHHTTC---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhc----C-------CcchHHHHHHHHHHHHHhc---HHHHHHHHHHH
Confidence 35677899999999999999988766443 1 2334445567888888865 44555544444
No 334
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=29.69 E-value=66 Score=25.77 Aligned_cols=20 Identities=25% Similarity=0.190 Sum_probs=15.3
Q ss_pred HhhhhccCCchhHhhhhHhh
Q 024447 115 GVAAYHSGQFDKARNALTSA 134 (267)
Q Consensus 115 g~v~~h~g~~d~A~~~l~~a 134 (267)
|.+.+..|+.++|...+.++
T Consensus 25 g~~~~~~~~~~~A~~~~~~a 44 (212)
T 3rjv_A 25 ADTWVSSGDYQKAEYWAQKA 44 (212)
T ss_dssp HHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHH
Confidence 66666788888888887765
No 335
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=29.03 E-value=64 Score=25.07 Aligned_cols=37 Identities=16% Similarity=0.299 Sum_probs=28.6
Q ss_pred HHHHH-hCCCCHHHHHHHHHHcCCCHHHHHHhccCCCc
Q 024447 220 IKELV-SIGFEKELVAEALRRNENDSQKALDDLTNPES 256 (267)
Q Consensus 220 v~~L~-~MGF~~~~A~~ALr~t~ndve~AldlL~~pd~ 256 (267)
|.+|| +..-+-..+.+||-+|.||++.|..+|.+|..
T Consensus 17 i~~lMeef~~DL~sVTqAlLK~SGel~at~~fL~~~~r 54 (111)
T 3k6g_A 17 IRQLMEKFNLDLSTVTQAFLKNSGELEATSAFLASGQR 54 (111)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHSSC
T ss_pred HHHHHHHHhhhHHHHHHHHHHccccHHHHHHHHhCCCc
Confidence 44433 44566778899999999999999998887753
No 336
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=28.77 E-value=3.3e+02 Score=24.68 Aligned_cols=81 Identities=15% Similarity=0.064 Sum_probs=51.1
Q ss_pred chhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchh
Q 024447 47 NGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDK 126 (267)
Q Consensus 47 n~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~r~yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~ 126 (267)
+++-......++|+..++ ...|...+.+|-+........+.+.-. .-..+...++.-.|++.+..|+.++
T Consensus 266 ~~a~~~~~~G~~~~~~g~---~~~A~~~y~~Al~~~p~~~~~~~~~~~-------~~~~~~~~~~~nla~~~~~~g~~~~ 335 (457)
T 1kt0_A 266 EQAAIVKEKGTVYFKGGK---YMQAVIQYGKIVSWLEMEYGLSEKESK-------ASESFLLAAFLNLAMCYLKLREYTK 335 (457)
T ss_dssp HHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHTTCCSCCHHHHH-------HHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHhcccccCChHHHH-------HHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 344555667788887664 667777777776655443322222111 1123345666777999999999999
Q ss_pred HhhhhHhhHhh
Q 024447 127 ARNALTSAQAK 137 (267)
Q Consensus 127 A~~~l~~a~~~ 137 (267)
|...+.++-..
T Consensus 336 A~~~~~~al~~ 346 (457)
T 1kt0_A 336 AVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99998876543
No 337
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=28.51 E-value=1.6e+02 Score=21.09 Aligned_cols=60 Identities=10% Similarity=-0.026 Sum_probs=39.4
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Q 024447 6 MLHANAKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERA 85 (267)
Q Consensus 6 ~l~ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~r~ 85 (267)
.++..|..+++.++|++|+..+-.|=+. +|. ++-....+..||..+++ ...|...|++.
T Consensus 53 a~~~lg~~~~~~g~~~~A~~~~~~al~l----~P~-------~~~~~~~la~~~~~~g~----------~~~A~~~~~~a 111 (121)
T 1hxi_A 53 AWRSLGLTQAENEKDGLAIIALNHARML----DPK-------DIAVHAALAVSHTNEHN----------ANAALASLRAW 111 (121)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTT-------CHHHHHHHHHHHHHHHH----------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCC-------CHHHHHHHHHHHHHcCC----------HHHHHHHHHHH
Confidence 4677899999999999999998766443 222 23334566777776543 44555555554
Q ss_pred h
Q 024447 86 H 86 (267)
Q Consensus 86 y 86 (267)
.
T Consensus 112 l 112 (121)
T 1hxi_A 112 L 112 (121)
T ss_dssp H
T ss_pred H
Confidence 4
No 338
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=27.45 E-value=49 Score=22.33 Aligned_cols=29 Identities=14% Similarity=-0.030 Sum_probs=24.6
Q ss_pred hhhHhHHHHHHhhchHHHHHHHHhhhhhh
Q 024447 6 MLHANAKSLIKRHMYKDALEVLTMGEEAF 34 (267)
Q Consensus 6 ~l~ek~r~~~~~~~y~~al~~ll~ad~~f 34 (267)
.++..|...++.++|++|+..+..|=+..
T Consensus 37 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 37 AYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 56778999999999999999998876554
No 339
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.23 E-value=65 Score=29.67 Aligned_cols=72 Identities=17% Similarity=0.215 Sum_probs=50.9
Q ss_pred HhhchHHHHHHHHhhhhhhccCChh------hhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhCCC
Q 024447 16 KRHMYKDALEVLTMGEEAFSLCDPK------VLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERAHGKD 89 (267)
Q Consensus 16 ~~~~y~~al~~ll~ad~~f~~c~~~------~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~r~yG~~ 89 (267)
..+++++|+.+|...-..+..++++ .-...+=+-++.+-|+.+|+.+.| ++.|+..|.+|+..+...-|.+
T Consensus 88 ~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d---~~~a~~~l~~~~~~l~~~~~~~ 164 (393)
T 4b4t_O 88 DSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKND---LVKARDLLDDLEKTLDKKDSIP 164 (393)
T ss_dssp HTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSC---HHHHHHHHHHHHHHHHHSCCSS
T ss_pred hcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHhhhccCCcc
Confidence 4568899999997665555433332 222233355678899999999876 6799999999999887766555
Q ss_pred H
Q 024447 90 S 90 (267)
Q Consensus 90 ~ 90 (267)
+
T Consensus 165 ~ 165 (393)
T 4b4t_O 165 L 165 (393)
T ss_dssp S
T ss_pred H
Confidence 3
No 340
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=27.08 E-value=1.4e+02 Score=24.10 Aligned_cols=29 Identities=14% Similarity=0.084 Sum_probs=24.1
Q ss_pred hhhhHhHHHHHHhhchHHHHHHHHhhhhh
Q 024447 5 LMLHANAKSLIKRHMYKDALEVLTMGEEA 33 (267)
Q Consensus 5 ~~l~ek~r~~~~~~~y~~al~~ll~ad~~ 33 (267)
..++-+|.++.+-++|++|+...-.|=+.
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l 86 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHY 86 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 46788999999999999999987666443
No 341
>2wx3_A MRNA-decapping enzyme 1A; structural protein, trimerization module, P-BODY component, asymmetric assembly; 2.31A {Homo sapiens}
Probab=26.42 E-value=49 Score=22.45 Aligned_cols=25 Identities=16% Similarity=0.291 Sum_probs=21.7
Q ss_pred HHHHHHhhchHHHHHHHHhhhhhhc
Q 024447 11 AKSLIKRHMYKDALEVLTMGEEAFS 35 (267)
Q Consensus 11 ~r~~~~~~~y~~al~~ll~ad~~f~ 35 (267)
....+-|.|+.+||.+|+.-|..|-
T Consensus 7 ~~~~Ltk~Ql~qaLihLIqnD~~Fl 31 (51)
T 2wx3_A 7 LSIILSKSQLQDTLIHLIKNDSSFL 31 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred CcCccCHHHHHHHHHHHHHcCHHHH
Confidence 4457889999999999999998884
No 342
>3ip4_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB: 2df4_B 2dqn_B* 2g5h_B 2g5i_B* 2f2a_B
Probab=25.99 E-value=4.5e+02 Score=25.30 Aligned_cols=97 Identities=13% Similarity=0.292 Sum_probs=57.7
Q ss_pred HhhhccCCCChhhHhhHH-hCCCCHHHHHHH-----H-------HHhCCCHHHHHHHHHhhhhhhhhhhhhhHHHHHHHH
Q 024447 135 QAKFFQLQVPDESLSLVM-SMGFKEQDAKRA-----L-------RICSQDVGSAIDFLVEEKAKRVKEREDNEQRRKEIM 201 (267)
Q Consensus 135 ~~~~~~l~vd~~~l~~L~-~MGF~~~~Ar~A-----L-------r~~~gdve~A~~wL~~~~~d~~~~~~~~~e~~~~~~ 201 (267)
++.++++ +++....++ +.|.+...|+.= + -..+.+...|.+||+..--..-
T Consensus 289 ~~~lPEl--P~~k~~R~~~eygLs~~dA~~L~~~~~~a~~Fe~~v~~~~~~k~~anw~~~el~~~l-------------- 352 (483)
T 3ip4_B 289 RQTIPEL--PDERKAKYVNELGLPAYDAHVLTLTKEMSDFFESTIEHGADVKLTSNWLMGGVNEYL-------------- 352 (483)
T ss_dssp HTTCCCC--HHHHHHHHHHTSCCCHHHHHHHTSSHHHHHHHHHHHTTTCCHHHHHHHHHTHHHHHH--------------
T ss_pred HHhCCCC--HHHHHHHHHhhcCCCHHHHHHHHcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--------------
Confidence 3344443 567777776 589999988641 1 1124588999999966421110
Q ss_pred HHhhcCCCCCCCcCCHHHHHHHHhC---C-CCHHHHHHHHH---HcCCCHHHHHH
Q 024447 202 EQKRYGLTPLKKAVDIEKIKELVSI---G-FEKELVAEALR---RNENDSQKALD 249 (267)
Q Consensus 202 ~~~~~~~~~~~~~vd~e~v~~L~~M---G-F~~~~A~~ALr---~t~ndve~Ald 249 (267)
.+.+.+.....++++.+..|..| | .+...|++-|. .++++.+..++
T Consensus 353 --n~~~~~i~~~~i~p~~la~li~li~~g~Is~~~ak~vl~~~~~~~~~p~~iVe 405 (483)
T 3ip4_B 353 --NKNQVELLDTKLTPENLAGMIKLIEDGTMSSKIAKKVFPELAAKGGNAKQIME 405 (483)
T ss_dssp --HHTTCCGGGSSCCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred --hhCCCCHHhcCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCCHHHHHH
Confidence 01122222334677777777665 4 77777777654 34677777776
No 343
>1nri_A Hypothetical protein HI0754; structural genomics, haemophilus influ PSI, protein structure initiative, midwest center for struc genomics; 1.90A {Haemophilus influenzae} SCOP: c.80.1.3
Probab=25.78 E-value=15 Score=32.81 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHcCCCHHHHHH
Q 024447 226 IGFEKELVAEALRRNENDSQKALD 249 (267)
Q Consensus 226 MGF~~~~A~~ALr~t~ndve~Ald 249 (267)
-|.+.+.|++.|.+++|++-.|++
T Consensus 282 ~~~~~~~a~~~l~~~~~~~~~~~~ 305 (306)
T 1nri_A 282 STLSKSEAKVLLERHQGKLRNALS 305 (306)
T ss_dssp ------------------------
T ss_pred hCCCHHHHHHHHHHcCCcHHHHhh
Confidence 467788888888888888887763
No 344
>4g3o_A E3 ubiquitin-protein ligase AMFR; all-helical structure, BAG6; 1.60A {Homo sapiens}
Probab=25.77 E-value=1e+02 Score=21.31 Aligned_cols=33 Identities=15% Similarity=0.163 Sum_probs=26.2
Q ss_pred HHHHHHhC--CCCHHHHHHHHHHcCCCHHHHHH-hcc
Q 024447 219 KIKELVSI--GFEKELVAEALRRNENDSQKALD-DLT 252 (267)
Q Consensus 219 ~v~~L~~M--GF~~~~A~~ALr~t~ndve~Ald-lL~ 252 (267)
.++++.+| -++.+....-|.+| |+|+.-++ +|.
T Consensus 20 Mve~V~~mFPqv~~~~I~~DL~rT-gSVe~TienILe 55 (58)
T 4g3o_A 20 MAHQIQEMFPQVPYHLVLQDLQLT-RSVEITTDNILE 55 (58)
T ss_dssp HHHHHHHHCTTSCHHHHHHHHHHH-CCHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHh-CCHHHHHHHHHc
Confidence 35555566 58899999999999 89999988 654
No 345
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=25.50 E-value=3.7e+02 Score=24.19 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=12.5
Q ss_pred HhHHHHHHhh---chHHHHHHHHhh
Q 024447 9 ANAKSLIKRH---MYKDALEVLTMG 30 (267)
Q Consensus 9 ek~r~~~~~~---~y~~al~~ll~a 30 (267)
.-|....+.+ ++++|+..+..|
T Consensus 181 ~Lg~~~~~~g~~~~~~~A~~~~~~a 205 (452)
T 3e4b_A 181 ELATVYQKKQQPEQQAELLKQMEAG 205 (452)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcccHHHHHHHHHHH
Confidence 3344445555 666666666655
No 346
>3h0l_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_B 3h0r_B*
Probab=25.31 E-value=4.6e+02 Score=25.19 Aligned_cols=98 Identities=14% Similarity=0.302 Sum_probs=56.7
Q ss_pred hHhhhccCCCChhhHhhHH-hCCCCHHHHHHH-----H-------HHhCCCHHHHHHHHHhhhhhhhhhhhhhHHHHHHH
Q 024447 134 AQAKFFQLQVPDESLSLVM-SMGFKEQDAKRA-----L-------RICSQDVGSAIDFLVEEKAKRVKEREDNEQRRKEI 200 (267)
Q Consensus 134 a~~~~~~l~vd~~~l~~L~-~MGF~~~~Ar~A-----L-------r~~~gdve~A~~wL~~~~~d~~~~~~~~~e~~~~~ 200 (267)
.++.++++ +++....++ +.|.+...|+.= + -..+.+...|.+||+..--..-.
T Consensus 291 i~~~lPEl--P~~~~~R~~~~ygLs~~dA~~L~~~~~~a~~fe~~~~~~~~~k~~anw~~~el~~~ln------------ 356 (478)
T 3h0l_B 291 IKKNMPEL--PDQRFERLIKEYGLSEYEAGILVNHKEVGDFFEEAVRHFKEPKGIVNWLINDLLGLLR------------ 356 (478)
T ss_dssp HHHTCCCC--HHHHHHHHHHHTCCCHHHHHHHHHSHHHHHHHHHHHHHSCCHHHHHHHHHHTHHHHHH------------
T ss_pred HHHhCCCC--HHHHHHHHHhccCCCHHHHHHHHcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH------------
Confidence 34444444 567777776 689999888641 1 12356888999999764311100
Q ss_pred HHHhhcCCCCCCCcCCHHHHHHHHhC---C-CCHHHHHHHHH---HcCCCHHHHHH
Q 024447 201 MEQKRYGLTPLKKAVDIEKIKELVSI---G-FEKELVAEALR---RNENDSQKALD 249 (267)
Q Consensus 201 ~~~~~~~~~~~~~~vd~e~v~~L~~M---G-F~~~~A~~ALr---~t~ndve~Ald 249 (267)
+.+.+.....++++.+..|..| | .+...|++-|. .++++.+..++
T Consensus 357 ----~~~~~i~~~~i~p~~la~li~li~~g~Is~~~ak~vl~~~~~~~~~p~eIVe 408 (478)
T 3h0l_B 357 ----DKGISIEESPVKPEHLAELVKLIKEKVISTKIGKEVIKEMVETGKTPSQIVE 408 (478)
T ss_dssp ----HHTCCGGGCSSCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred ----hCCCCHhhcCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCCHHHHHH
Confidence 0022222234667777776654 4 66677766554 34667766666
No 347
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=25.12 E-value=1.7e+02 Score=20.14 Aligned_cols=65 Identities=25% Similarity=0.128 Sum_probs=39.4
Q ss_pred chhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchh
Q 024447 47 NGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDK 126 (267)
Q Consensus 47 n~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~r~yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~ 126 (267)
+.+.....+.++|+..++ .++|...+.++-+. ++ ...+ + +..-|.+.+..|+.++
T Consensus 17 ~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~-------~p---------~~~~-~-----~~~la~~~~~~g~~~~ 71 (115)
T 2kat_A 17 DNMLLRFTLGKTYAEHEQ---FDAALPHLRAALDF-------DP---------TYSV-A-----WKWLGKTLQGQGDRAG 71 (115)
T ss_dssp CCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH-------CT---------TCHH-H-----HHHHHHHHHHHTCHHH
T ss_pred CcHHHHHHHHHHHHHccC---HHHHHHHHHHHHHH-------CC---------CcHH-H-----HHHHHHHHHHcCCHHH
Confidence 345567788999988775 34454444444321 11 1111 1 2233778888999999
Q ss_pred HhhhhHhhHh
Q 024447 127 ARNALTSAQA 136 (267)
Q Consensus 127 A~~~l~~a~~ 136 (267)
|...+..+-.
T Consensus 72 A~~~~~~al~ 81 (115)
T 2kat_A 72 ARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998876644
No 348
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=25.11 E-value=1.9e+02 Score=23.53 Aligned_cols=22 Identities=14% Similarity=0.421 Sum_probs=18.8
Q ss_pred HHHHHHHhCCCCHHHHHHHHHH
Q 024447 218 EKIKELVSIGFEKELVAEALRR 239 (267)
Q Consensus 218 e~v~~L~~MGF~~~~A~~ALr~ 239 (267)
..+..|+.=||+.+.+..+|..
T Consensus 141 K~~~~L~rrGF~~~~I~~vl~~ 162 (177)
T 3e3v_A 141 KIKQSLLTKGFSYDIIDTIIQE 162 (177)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHH
Confidence 4566899999999999999875
No 349
>2oo2_A Hypothetical protein AF_1782; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: a.8.11.1
Probab=24.40 E-value=63 Score=24.08 Aligned_cols=28 Identities=7% Similarity=0.055 Sum_probs=24.2
Q ss_pred hhhhhhHhHHHHHHhhchHHHHHHHHhh
Q 024447 3 MGLMLHANAKSLIKRHMYKDALEVLTMG 30 (267)
Q Consensus 3 ~~~~l~ek~r~~~~~~~y~~al~~ll~a 30 (267)
||-.+.+-||-+++++++..||..+-=|
T Consensus 34 mA~~Y~~Da~~fl~kGD~v~Ala~isYa 61 (86)
T 2oo2_A 34 NIEAYISDSRYFLEKGDLVRAFECVVWA 61 (86)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6778889999999999999999887544
No 350
>2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.32A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.8.11.1
Probab=24.19 E-value=63 Score=24.07 Aligned_cols=28 Identities=7% Similarity=0.080 Sum_probs=23.2
Q ss_pred hhhhhhHhHHHHHHhhchHHHHHHHHhh
Q 024447 3 MGLMLHANAKSLIKRHMYKDALEVLTMG 30 (267)
Q Consensus 3 ~~~~l~ek~r~~~~~~~y~~al~~ll~a 30 (267)
||-.+.+-||-++++++|..||..+-=|
T Consensus 38 mA~~Y~~Da~~fl~kGD~v~Ala~isYa 65 (87)
T 2pmr_A 38 RALNYRDDSVYYLEKGDHITSFGCITYA 65 (87)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6777888899999999999999877544
No 351
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=24.12 E-value=16 Score=30.92 Aligned_cols=24 Identities=17% Similarity=0.286 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHc
Q 024447 217 IEKIKELVSIGFEKELVAEALRRN 240 (267)
Q Consensus 217 ~e~v~~L~~MGF~~~~A~~ALr~t 240 (267)
.+.+..|+.+||++.+|.+|++..
T Consensus 147 ~ea~~AL~~LGy~~~ea~~av~~~ 170 (191)
T 1ixr_A 147 EEAVMALAALGFKEAQARAVVLDL 170 (191)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHH
Confidence 468999999999999999998765
No 352
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.05 E-value=4.3e+02 Score=24.38 Aligned_cols=100 Identities=14% Similarity=0.095 Sum_probs=68.3
Q ss_pred HHHHHHhhchHHHHHHHHhhh-hhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhCCC
Q 024447 11 AKSLIKRHMYKDALEVLTMGE-EAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRLRKAREGIERAHGKD 89 (267)
Q Consensus 11 ~r~~~~~~~y~~al~~ll~ad-~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL~~ae~~f~r~yG~~ 89 (267)
++-....|+|.+|..+|.+-- |.|..-+.. +-|+ ..|-++-.|+..+|. +.|+.-+.++...+...+.
T Consensus 144 a~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~--~kve----~~l~q~rl~l~~~d~---~~a~~~~~ki~~~~~~~~~-- 212 (445)
T 4b4t_P 144 VEIKKEEGKIDEAADILCELQVETYGSMEMS--EKIQ----FILEQMELSILKGDY---SQATVLSRKILKKTFKNPK-- 212 (445)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHCSSSCHH--HHHH----HHHHHHHHHHHHTCH---HHHHHHHHHHHHHHHHSSC--
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHhcccHH--HHHH----HHHHHHHHHHHCCCH---HHHHHHHHHHHHhhcccCC--
Confidence 556678899999999987743 344443332 1222 346688889998875 5666667776655544441
Q ss_pred HHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhh
Q 024447 90 SSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSA 134 (267)
Q Consensus 90 ~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a 134 (267)
. ..+-++++.+.|.+.-|.+++-+|..++-.+
T Consensus 213 -----------~--~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 213 -----------Y--ESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp -----------C--HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred -----------c--HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 1 2366788999999999999999998866544
No 353
>3o10_A Sacsin; all-helical domain, homodimerization, chaperone; 1.90A {Homo sapiens}
Probab=23.80 E-value=1.2e+02 Score=23.88 Aligned_cols=22 Identities=23% Similarity=0.209 Sum_probs=16.3
Q ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHh
Q 024447 156 FKEQDAKRALRICSQDVGSAIDFLVE 181 (267)
Q Consensus 156 F~~~~Ar~ALr~~~gdve~A~~wL~~ 181 (267)
|++.+|.+|+.. .++.++|+.+
T Consensus 114 yt~~~Ae~al~~----A~~v~~~v~~ 135 (141)
T 3o10_A 114 FTSEVAMRVMEC----TACIIIKLEN 135 (141)
T ss_dssp CCHHHHHHHHHH----HHHHHHHHHH
T ss_pred hhHHHHHHHHHh----hhhhhhhHHh
Confidence 689999999986 4556667644
No 354
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=23.60 E-value=38 Score=26.58 Aligned_cols=46 Identities=26% Similarity=0.285 Sum_probs=31.0
Q ss_pred HHHHHHhhchHHHHHHHHhhhhhhccCChhhhhhccchhhhhhhHHHHHHHhCCCCCHHHHHHHH
Q 024447 11 AKSLIKRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGPLLQIDMVWCYFMLRDISWLSEAGIRL 75 (267)
Q Consensus 11 ~r~~~~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a~l~ldivwcy~~l~~~~~l~dA~~rL 75 (267)
--++|.||+|.+|+.++- ..|-|+| |-|--+|=--+...+.+..||
T Consensus 47 ~sSLmNrG~Yq~Al~l~~------~~c~pdl-------------epw~ALce~rlGl~s~le~rL 92 (116)
T 2p58_C 47 LSSLMNRGDYASALQQGN------KLAYPDL-------------EPWLALCEYRLGLGSALESRL 92 (116)
T ss_dssp HHHHHHTTCHHHHHHHHT------TSCCGGG-------------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHcchhHHHHHHhcC------CCCCchH-------------HHHHHHHHHhcccHHHHHHHH
Confidence 347899999999998875 4676655 356666544445555555555
No 355
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=23.37 E-value=1.3e+02 Score=20.41 Aligned_cols=26 Identities=15% Similarity=0.101 Sum_probs=22.0
Q ss_pred CCHHHHHHHHhCCCCHHHHHHHHHHc
Q 024447 215 VDIEKIKELVSIGFEKELVAEALRRN 240 (267)
Q Consensus 215 vd~e~v~~L~~MGF~~~~A~~ALr~t 240 (267)
+-..++.-|.+=|.+.+...+||+++
T Consensus 29 p~~~K~~FL~sKGLt~~EI~~Al~rs 54 (54)
T 3ff5_A 29 PLATRRAFLKKKGLTDEEIDLAFQQS 54 (54)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 34467899999999999999999864
No 356
>3bq3_A Defective in cullin neddylation protein 1; ubiquitin, ubiquitination,SCF,cullin, E3 E2, cell cycle, protein degradation, ligase; 1.90A {Saccharomyces cerevisiae} PDB: 2is9_A* 3o2p_A 3o6b_A 3tdi_B 2l4e_A 2l4f_A
Probab=22.95 E-value=86 Score=27.92 Aligned_cols=39 Identities=10% Similarity=0.168 Sum_probs=32.2
Q ss_pred hhHhhHHhC-CCCHHHHHHHHHHhCCCHHHHHHHHHhhhh
Q 024447 146 ESLSLVMSM-GFKEQDAKRALRICSQDVGSAIDFLVEEKA 184 (267)
Q Consensus 146 ~~l~~L~~M-GF~~~~Ar~ALr~~~gdve~A~~wL~~~~~ 184 (267)
+.|++.++. |-++..|+.-|..++.|++.|++-.++.++
T Consensus 17 ~~i~qF~~iTg~~~~~A~~~L~~~~WdLe~Al~~ff~~~~ 56 (270)
T 3bq3_A 17 EAIESFTSLTKCDPKVSRKYLQRNHWNINYALNDYYDKEI 56 (270)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCcc
Confidence 346665554 899999999999999999999998887764
No 357
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=22.94 E-value=1.3e+02 Score=23.99 Aligned_cols=22 Identities=18% Similarity=0.209 Sum_probs=17.3
Q ss_pred HHHHHHHhCCCCHHHHHHHHHH
Q 024447 218 EKIKELVSIGFEKELVAEALRR 239 (267)
Q Consensus 218 e~v~~L~~MGF~~~~A~~ALr~ 239 (267)
..+..|+.=||+.+.+..+|..
T Consensus 135 K~~~~L~rrGF~~~~i~~~l~~ 156 (159)
T 3c1d_A 135 KIQRFLLYRGYLMEDIQDIWRN 156 (159)
T ss_dssp HHHHHHHHTTCCHHHHTTCC--
T ss_pred HHHHHHHHCCCCHHHHHHHHHh
Confidence 5677899999999999887753
No 358
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=22.90 E-value=23 Score=24.85 Aligned_cols=15 Identities=33% Similarity=0.403 Sum_probs=5.5
Q ss_pred HHHHHHhhchHHHHH
Q 024447 11 AKSLIKRHMYKDALE 25 (267)
Q Consensus 11 ~r~~~~~~~y~~al~ 25 (267)
.-++|.||.|.+||.
T Consensus 47 ~~SLmNrG~Yq~Al~ 61 (61)
T 3ph0_C 47 LSSLMNQGDYQRALL 61 (61)
T ss_dssp HHHHHHC--------
T ss_pred HHHHHccchHhHhhC
Confidence 457999999999984
No 359
>2kna_A Baculoviral IAP repeat-containing protein 4; XIAP, UBA, apoptosis, ligase, metal-binding, phosphoprotein, inhibitor, thiol protease inhibitor; NMR {Homo sapiens}
Probab=22.64 E-value=1.5e+02 Score=22.44 Aligned_cols=38 Identities=18% Similarity=0.305 Sum_probs=26.8
Q ss_pred hhHhhHHhCCCCHHHHHHHHHH----hCCC---HHHHHHHHHhhh
Q 024447 146 ESLSLVMSMGFKEQDAKRALRI----CSQD---VGSAIDFLVEEK 183 (267)
Q Consensus 146 ~~l~~L~~MGF~~~~Ar~ALr~----~~gd---ve~A~~wL~~~~ 183 (267)
..+...++|||+....+.+... +|.+ ++.-+.=+++..
T Consensus 29 ~vV~~alemGf~~~~V~~~v~~ki~~sG~~y~Tve~Lv~~ll~~~ 73 (104)
T 2kna_A 29 PMVQEAIRMGFSFKDIKKIMEEKIQISGSNYKSLEVLVADLVNAQ 73 (104)
T ss_dssp THHHHHHHTTCCHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCccHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence 5677888999999999988754 4443 666555555443
No 360
>1m9i_A Annexin VI; calcium-binding, membrane-binding, phosphorylation, mutant T356D, lipid binding protein; 2.65A {Homo sapiens} SCOP: a.65.1.1 a.65.1.1 PDB: 1avc_A
Probab=22.25 E-value=4.5e+02 Score=26.19 Aligned_cols=157 Identities=13% Similarity=0.189 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHcCCcchhhHHHHHHHHHHhhhhccCCchhHhhhhHhhH-hh--------hccCCCC
Q 024447 74 RLRKAREGIERAHGKDSSRVRLLQAGRHPELALHLRMELLEGVAAYHSGQFDKARNALTSAQ-AK--------FFQLQVP 144 (267)
Q Consensus 74 rL~~ae~~f~r~yG~~~~rl~~lkg~~~~E~al~lRL~lLqg~v~~h~g~~d~A~~~l~~a~-~~--------~~~l~vd 144 (267)
-|....+.|++.||.++.. .|++.++-.-.=+| ++.+.|+.+.+-+.++... -. ...+.+.
T Consensus 284 Dl~~Ik~~y~~~yg~sL~~--~I~~dtsGdY~~~L--------laL~~~~~~~~g~~~~~~a~~~~~~~~~~~~~~~~~~ 353 (672)
T 1m9i_A 284 DMLDIREIFRTKYEKSLYS--MIKNDTSGEYKKTL--------LKLSGGDDDAAGQFFPEAAQVAYQMWELSAVARVELK 353 (672)
T ss_dssp THHHHHHHHHHHSSSCHHH--HHHTTCCHHHHHHH--------HHHHCSCTTSSCCCCHHHHHHHHHHHHHHHHCCCCCC
T ss_pred HHHHHHHHHHHHhCCcHHH--HHHHhcCCcHHHHH--------HHHhCCccccccccCCccccccccccccccccccCCC
Confidence 3567788999999999986 47876665533222 2444444332222222110 00 0111111
Q ss_pred hhhHhhHHhCCCCHHHHHHHHHHh-CC--CHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHH--hhcCCCCCC-----Cc
Q 024447 145 DESLSLVMSMGFKEQDAKRALRIC-SQ--DVGSAIDFLVEEKAKRVKEREDNEQRRKEIMEQ--KRYGLTPLK-----KA 214 (267)
Q Consensus 145 ~~~l~~L~~MGF~~~~Ar~ALr~~-~g--dve~A~~wL~~~~~d~~~~~~~~~e~~~~~~~~--~~~~~~~~~-----~~ 214 (267)
++.. -.-+|++..-..+|+.. .| .=+.++-.|+.++.... +..|+.. ..||..-.. ..
T Consensus 354 ~ti~---~~~~f~~~~Da~~L~kA~kG~GtDE~~iI~IL~~rs~~Q---------R~~I~~~Y~~~~gkdL~~~Lksels 421 (672)
T 1m9i_A 354 GDVR---PANDFNPDADAKALRKAMKGLGTDEDTIIDIITHRSNVQ---------RQQIRQTFKSHFGRDLMTDLKSEIS 421 (672)
T ss_dssp CSCC---CCTTCCHHHHHHHHHHHHSSSSCCHHHHHHHHHTSCHHH---------HHHHHHHHHHHHSSCHHHHHHHHCC
T ss_pred CCcC---CCCCCChHHHHHHHHHHhcCCCCCHHHHHHHHhcCCHHH---------HHHHHHHHHHHhCchHHHHHHHHcC
Confidence 1111 12379998888888644 44 33677777887764321 1111110 112221000 00
Q ss_pred CCHHHHHHHHhCC---CCHHHHHHHHHHcCCCHHHHHHhcc
Q 024447 215 VDIEKIKELVSIG---FEKELVAEALRRNENDSQKALDDLT 252 (267)
Q Consensus 215 vd~e~v~~L~~MG---F~~~~A~~ALr~t~ndve~AldlL~ 252 (267)
-+.+.+-...-++ |+...+.+|++-.+.|-+--+++|.
T Consensus 422 G~fe~~i~~l~~~p~~~DA~~l~~A~kg~gTde~~LiEIL~ 462 (672)
T 1m9i_A 422 GDLARLILGLMMPPAHYDAKQLKKAMEGAGTDEKALIEILA 462 (672)
T ss_dssp THHHHHHHHHHSCHHHHHHHHHHHHHSSSSCCHHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHhccCCCHHHHHHhhh
Confidence 1223333333333 6666788888887788888888765
No 361
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=21.99 E-value=52 Score=25.50 Aligned_cols=28 Identities=21% Similarity=0.209 Sum_probs=23.5
Q ss_pred hHHHHHHhhchHHHHHHHHhhhhhhccC
Q 024447 10 NAKSLIKRHMYKDALEVLTMGEEAFSLC 37 (267)
Q Consensus 10 k~r~~~~~~~y~~al~~ll~ad~~f~~c 37 (267)
.+=...|+++|++|-.+|-+|++.|..+
T Consensus 28 eAl~~Ak~gdfe~A~~~l~eA~~~l~~A 55 (109)
T 3k1s_A 28 EALQFAKQGKMAEADEAMVKAKEAINEA 55 (109)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 3445678999999999999999998754
No 362
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=21.76 E-value=68 Score=29.33 Aligned_cols=25 Identities=20% Similarity=0.416 Sum_probs=20.7
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHcCC
Q 024447 218 EKIKELVSIGFEKELVAEALRRNEN 242 (267)
Q Consensus 218 e~v~~L~~MGF~~~~A~~ALr~t~n 242 (267)
..|..|++|||+..++.++|...-+
T Consensus 48 ~~l~~L~d~Gfs~~~i~~il~~~P~ 72 (335)
T 4fp9_B 48 RVMSSLLDMGFSNAHINELLSVRRG 72 (335)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHCSS
T ss_pred HHHHHHHHCCCCHHHHHHHHHhCcc
Confidence 4577899999999999999887654
No 363
>3kfu_F Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Probab=21.69 E-value=2.1e+02 Score=27.59 Aligned_cols=79 Identities=22% Similarity=0.299 Sum_probs=50.6
Q ss_pred ChhhHhhHHhCCCCHHHHHH-----HH----H----HhCCCHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHhhcCCCC
Q 024447 144 PDESLSLVMSMGFKEQDAKR-----AL----R----ICSQDVGSAIDFLVEEKAKRVKEREDNEQRRKEIMEQKRYGLTP 210 (267)
Q Consensus 144 d~~~l~~L~~MGF~~~~Ar~-----AL----r----~~~gdve~A~~wL~~~~~d~~~~~~~~~e~~~~~~~~~~~~~~~ 210 (267)
++++...+++.|.+...|+. ++ . ..+.+...|.+||+..--..- . +.+.+.
T Consensus 291 P~~k~~R~~~ygLs~~dA~~L~~~~~lad~FE~~v~~~~~~pk~aanWl~~el~~~L-----------n-----~~~~~i 354 (466)
T 3kfu_F 291 PWEKEARYRALGIKEKDAEVLAYTPSLARFLDQALPLGLASPQALANWLLADVAGLL-----------H-----ERGLRL 354 (466)
T ss_dssp HHHHHHHHTTTTCCHHHHHHHHSCHHHHHHHHHHTTSSSSCHHHHHHHHHTHHHHHH-----------H-----HHTCCS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH-----------H-----HCCCCh
Confidence 56778888889999998864 22 1 124578999999976432110 0 012333
Q ss_pred CCCcCCHHHHHHHHhC---C-CCHHHHHHHHH
Q 024447 211 LKKAVDIEKIKELVSI---G-FEKELVAEALR 238 (267)
Q Consensus 211 ~~~~vd~e~v~~L~~M---G-F~~~~A~~ALr 238 (267)
....++++.+..|..| | .+...|++-|.
T Consensus 355 ~~~~i~p~~la~Li~li~~g~Is~k~AK~vl~ 386 (466)
T 3kfu_F 355 EETRLSPEGLARLVGLFERGEVTSRVAKSLLP 386 (466)
T ss_dssp TTSSCCHHHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred hhCCCCHHHHHHHHHHHHcCCccHHHHHHHHH
Confidence 3345778887777665 4 77888887775
No 364
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=21.61 E-value=79 Score=24.24 Aligned_cols=27 Identities=7% Similarity=0.016 Sum_probs=22.9
Q ss_pred HHHHHHhhchHHHHHHHHhhhhhhccC
Q 024447 11 AKSLIKRHMYKDALEVLTMGEEAFSLC 37 (267)
Q Consensus 11 ~r~~~~~~~y~~al~~ll~ad~~f~~c 37 (267)
+=...|+++|++|-.+|-+|++.|...
T Consensus 27 Al~~Ak~g~fe~A~~~l~eA~~~l~~A 53 (105)
T 2e2a_A 27 ALKAAENGDFAKADSLVVEAGSCIAEA 53 (105)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 445679999999999999999988753
No 365
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=21.45 E-value=78 Score=21.65 Aligned_cols=28 Identities=7% Similarity=0.095 Sum_probs=24.8
Q ss_pred CCCHHHHHHHHHHcCCCHHHHHHhccCC
Q 024447 227 GFEKELVAEALRRNENDSQKALDDLTNP 254 (267)
Q Consensus 227 GF~~~~A~~ALr~t~ndve~AldlL~~p 254 (267)
|-..+-+.+.|..++-|.++|+..|...
T Consensus 18 ~Mn~e~S~~cL~~n~Wd~~~A~~~F~~~ 45 (57)
T 2jp7_A 18 KLNAEYTFMLAEQSNWNYEVAIKGFQSS 45 (57)
T ss_dssp CSCHHHHHHHHHHTTTCSHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 7788999999999999999999977653
No 366
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=21.13 E-value=83 Score=24.06 Aligned_cols=27 Identities=15% Similarity=0.103 Sum_probs=22.9
Q ss_pred HHHHHHhhchHHHHHHHHhhhhhhccC
Q 024447 11 AKSLIKRHMYKDALEVLTMGEEAFSLC 37 (267)
Q Consensus 11 ~r~~~~~~~y~~al~~ll~ad~~f~~c 37 (267)
+=...|+++|++|-.+|-+|++.|...
T Consensus 25 Al~~Ak~g~fe~A~~~l~eA~~~l~~A 51 (103)
T 1wcr_A 25 ALKQAKQGDFAAAKAMMDQSRMALNEA 51 (103)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 445679999999999999999988743
No 367
>3l8r_A PTCA, putative PTS system, cellobiose-specific IIA component; helix; 2.50A {Streptococcus mutans} SCOP: a.7.2.0
Probab=20.96 E-value=56 Score=25.85 Aligned_cols=28 Identities=14% Similarity=0.109 Sum_probs=23.6
Q ss_pred hHHHHHHhhchHHHHHHHHhhhhhhccC
Q 024447 10 NAKSLIKRHMYKDALEVLTMGEEAFSLC 37 (267)
Q Consensus 10 k~r~~~~~~~y~~al~~ll~ad~~f~~c 37 (267)
.+=...|+++|++|-.+|-+|++.|..+
T Consensus 43 eAl~~Ak~gdfe~A~~~l~eA~e~l~~A 70 (120)
T 3l8r_A 43 EAFDAMREKNYILAEQKLQEANDELLKA 70 (120)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 3445679999999999999999998754
No 368
>2pfx_A Uncharacterized peroxidase-related protein; YP_614459.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE PG4; 1.70A {Silicibacter SP} SCOP: a.152.1.3
Probab=20.72 E-value=2e+02 Score=23.09 Aligned_cols=26 Identities=15% Similarity=0.365 Sum_probs=22.1
Q ss_pred CCChhhHhhHHhCCCCHHHHHHHHHH
Q 024447 142 QVPDESLSLVMSMGFKEQDAKRALRI 167 (267)
Q Consensus 142 ~vd~~~l~~L~~MGF~~~~Ar~ALr~ 167 (267)
.++++.++.|.+.||++.+.....-.
T Consensus 139 ~v~d~~~~~l~~~G~s~~ei~el~~~ 164 (191)
T 2pfx_A 139 EIEEADREVLRSHGFNDRDIWDIANV 164 (191)
T ss_dssp GCCHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHH
Confidence 47889999999999999988776654
No 369
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=20.54 E-value=74 Score=22.91 Aligned_cols=28 Identities=18% Similarity=0.372 Sum_probs=22.4
Q ss_pred HhHHHHHHhhchHHHHHHHHhhhhhhccCCh
Q 024447 9 ANAKSLIKRHMYKDALEVLTMGEEAFSLCDP 39 (267)
Q Consensus 9 ek~r~~~~~~~y~~al~~ll~ad~~f~~c~~ 39 (267)
+.|..++.++++++|..+|--|= +-|..
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl---~Vc~q 49 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAI---AVCGQ 49 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH---HTCSS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH---HHcCC
Confidence 57999999999999999987653 35554
No 370
>3ku8_A GYRA14, DNA gyrase subunit A; alpha+beta, SH3 domain, topoisomerase, toxin-isomerase compl; HET: DNA; 1.93A {Escherichia coli} PDB: 4ely_A* 1x75_A* 3kua_A* 4elz_A*
Probab=20.51 E-value=50 Score=27.22 Aligned_cols=24 Identities=21% Similarity=0.236 Sum_probs=15.5
Q ss_pred HHHHHHHHhhhhccCCchhHhhhhH
Q 024447 108 LRMELLEGVAAYHSGQFDKARNALT 132 (267)
Q Consensus 108 lRL~lLqg~v~~h~g~~d~A~~~l~ 132 (267)
=|+|+|+|.+--. .+.|+....+.
T Consensus 34 ~R~HILEGL~iAl-~nIDeVI~iIR 57 (156)
T 3ku8_A 34 DRAHILEALAVAL-ANIDPIIELIR 57 (156)
T ss_dssp HHHHHHHHHHHHH-HTHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HhHHHHHHHHH
Confidence 4788888876533 34666666664
No 371
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=20.21 E-value=1.8e+02 Score=20.72 Aligned_cols=42 Identities=12% Similarity=0.154 Sum_probs=30.8
Q ss_pred hhHhhHHhCCCCHHHHHHHHHHh-CC---CHHHHHHHHHhhhhhhh
Q 024447 146 ESLSLVMSMGFKEQDAKRALRIC-SQ---DVGSAIDFLVEEKAKRV 187 (267)
Q Consensus 146 ~~l~~L~~MGF~~~~Ar~ALr~~-~g---dve~A~~wL~~~~~d~~ 187 (267)
..|..|.++|||..+-+.-|... ++ +.+...+.|.++.+..+
T Consensus 7 ~~I~~lr~lGfsL~eIk~~l~~~~~~~~~~~~~~~~~L~~~~~~l~ 52 (99)
T 1q08_A 7 KFIRHARQLGFSLESIRELLSIRIDPEHHTCQESKGIVQERLQEVE 52 (99)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHCGGGCBHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHH
Confidence 35778999999999999988654 23 45666777777766654
No 372
>3t9o_A DGC, diguanylate cyclase YDEH; putative zinc sensor, CZB domain, metal protein; 2.20A {Escherichia coli}
Probab=20.11 E-value=27 Score=27.60 Aligned_cols=42 Identities=19% Similarity=0.309 Sum_probs=30.4
Q ss_pred hhHhHHHHH---HhhchHHHHHHHHhhhhhhccCChhhhhhccchh--hhhhh
Q 024447 7 LHANAKSLI---KRHMYKDALEVLTMGEEAFSLCDPKVLEFVDNGP--LLQID 54 (267)
Q Consensus 7 l~ek~r~~~---~~~~y~~al~~ll~ad~~f~~c~~~~l~~vDn~a--~l~ld 54 (267)
+|+.|+.++ +.++.++|. | +.|..+..++.+++|+|- ||+||
T Consensus 83 ~H~~a~~ii~~~~~g~~~~a~--~----~~~e~as~~~~~~ld~~k~~Ll~l~ 129 (135)
T 3t9o_A 83 MHNCGRELMLAIVENHWQDAH--F----DAFQEGLLSFTAALTDYKIYLLTLE 129 (135)
T ss_dssp HHHHHHHHHHHHHTTCCCHHH--H----HHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHcCChHHHH--H----HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 678887654 578888874 1 578888889999999996 55554
Done!