BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024448
(267 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8CGF5|TMM56_MOUSE Transmembrane protein 56 OS=Mus musculus GN=Tmem56 PE=2 SV=1
Length = 276
Score = 89.4 bits (220), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 114/220 (51%), Gaps = 10/220 (4%)
Query: 53 SYSSFSNIQRVEWSNRAISTVHAIFITAMSLYFVFWSDLFLDNQLASLITFRSAFPSTFT 112
Y+S S +++EW++R +ST H++ + LY F+ + + + L T+ +
Sbjct: 50 GYNSLSIDKKIEWNSRVVSTCHSLLVGIFGLYLFFFDEATITDPLWGDPTYVN-----IN 104
Query: 113 LGVSVGYFLADLGMIIWFYPALGGMEYVIHHLLSIAATACAMLTREAQFYTYMVLISETT 172
+ + GY ++DL +I++ + +G ++IHH + A + T + L++E +
Sbjct: 105 IATASGYLISDLLIILFNWKVIGDKFFIIHHCAGLTAYYFVLTTGALAYIANFRLLAELS 164
Query: 173 TPGINLRWYLDKAGMKR-SRAYLINGILMFLAWLVVRILFF--MYIFYHIYLHVDQVKQC 229
+P +N RW+ + + S+A +INGILM + + +VRI+ MY F + + +
Sbjct: 165 SPFVNQRWFFEALKYPKFSKANVINGILMTVVFFIVRIISIPPMYFFLYSVYGTEPYIRF 224
Query: 230 RTCVQILVFSVPVVLFIMNAVWFSKIVKGLVK--TLAKQQ 267
+Q + V+L +MN +W KI KG +K +L +Q+
Sbjct: 225 GFVIQSVWIVTCVILDVMNIMWMIKITKGCIKVISLIRQE 264
>sp|Q6PGS5|TM56B_XENLA Transmembrane protein 56-B OS=Xenopus laevis GN=tmem56-b PE=2 SV=1
Length = 262
Score = 85.1 bits (209), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 104/218 (47%), Gaps = 8/218 (3%)
Query: 53 SYSSFSNIQRVEWSNRAISTVHAIFITAMSLYFVFWSDLFLDNQLASLITFRSAFPSTFT 112
+ S Q++EW++R +S+ HA+ + LY L D+ + + + F
Sbjct: 37 GFHKLSARQKIEWNSRTVSSFHALVVGCFCLYI-----LVYDDAVNADPVWGDPFMVKLN 91
Query: 113 LGVSVGYFLADLGMIIWFYPALGGMEYVIHHLLSIAATACAMLTREAQFYTYMVLISETT 172
+ V+ GY ++DL +II+++ +G +V HHL ++ A + ++ LI+E +
Sbjct: 92 VAVTSGYLISDLLLIIYYWKEIGDKYFVTHHLAALYACYYVLGEGMLPYFGNFRLIAEFS 151
Query: 173 TPGINLRWYLDKAGM-KRSRAYLINGILMFLAWLVVRILFFMYIFYHIY--LHVDQVKQC 229
TP +N RW+ + G K S ++NG+LM +++ +VRI + ++ + +
Sbjct: 152 TPFVNQRWFFEVLGYSKYSLPNMVNGVLMTISFFIVRIAVIPIYYGRVFSTFGTEAFHRL 211
Query: 230 RTCVQILVFSVPVVLFIMNAVWFSKIVKGLVKTLAKQQ 267
Q V L IMN +W KI KG K L +
Sbjct: 212 GLGAQCAWIISSVSLDIMNVMWMIKIAKGCYKVLYHRD 249
>sp|Q96MV1|TMM56_HUMAN Transmembrane protein 56 OS=Homo sapiens GN=TMEM56 PE=1 SV=1
Length = 263
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 109/216 (50%), Gaps = 10/216 (4%)
Query: 53 SYSSFSNIQRVEWSNRAISTVHAIFITAMSLY-FVFWSDLFLDNQLASLITFRSAFPSTF 111
++S S +++EW++R +ST H++ + LY F+F D + + +
Sbjct: 37 GFNSLSFKKKIEWNSRVVSTCHSLVVGIFGLYIFLF------DEATKADPLWGGPSLANV 90
Query: 112 TLGVSVGYFLADLGMIIWFYPALGGMEYVIHHLLSIAATACAMLTREAQFYTYMVLISET 171
+ ++ GY ++DL +II ++ +G +++HH S+ A + + L++E
Sbjct: 91 NIAIASGYLISDLSIIILYWKVIGDKFFIMHHCASLYAYYLVLKNGVLAYIGNFRLLAEL 150
Query: 172 TTPGINLRWYLDKAGMKR-SRAYLINGILMFLAWLVVRILFFM--YIFYHIYLHVDQVKQ 228
++P +N RW+ + + S+A +INGILM + + +VRI + Y F + + +
Sbjct: 151 SSPFVNQRWFFEALKYPKFSKAIVINGILMTVVFFIVRIASMLPHYGFMYSVYGTEPYIR 210
Query: 229 CRTCVQILVFSVPVVLFIMNAVWFSKIVKGLVKTLA 264
+Q+ VVL +MN +W KI KG +K ++
Sbjct: 211 LGVLIQLSWVISCVVLDVMNVMWMIKISKGCIKVIS 246
>sp|Q6GLX2|TM56A_XENLA Transmembrane protein 56-A OS=Xenopus laevis GN=tmem56-a PE=2 SV=1
Length = 258
Score = 79.0 bits (193), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 112/255 (43%), Gaps = 15/255 (5%)
Query: 19 LADPLVPYTSIVGSIFACKMVYDLAQLISAVHFKSYSS----FSNIQRVEWSNRAISTVH 74
+ D L+ Y + GS ++++ IS F YSS S ++ EW +R +ST H
Sbjct: 1 MDDVLISYCVVTGSFLGFQLLF---SAISPRLFTKYSSTYRQLSFGKQCEWDSRFVSTNH 57
Query: 75 AIFITAMSLYFVFWSDLFLDNQLASLITFRSAFPSTFTLGVSVGYFLADLGMIIWFYPAL 134
A+ + + LY L D+ + + + F + ++ GY + DL ++ F+ +
Sbjct: 58 ALIVGSACLYI-----LAYDDAVNADPIWGDPFWVKMNVAITCGYLVQDLLLLARFWKVM 112
Query: 135 GGMEYVIHHLLSIAATACAMLTREAQFYTYMVLISETTTPGINLRWYLDKAGMKRSR-AY 193
V HHL + + ++ LISE +TP +N RW+ D G RS
Sbjct: 113 RDPYMVCHHLAVFYSYGYVLNRGVLPYFANFRLISELSTPFVNQRWFFDVIGKPRSSWPV 172
Query: 194 LINGILMFLAWLVVRILFFMYIFYHIYLHVDQVKQCRTCV--QILVFSVPVVLFIMNAVW 251
L+NG+ M L + +VRI + ++ R + Q+ VVL I+N W
Sbjct: 173 LLNGLAMALVFFIVRIAVIPSYYSQVFATFGTEGYIRLGIGPQVAWIVSCVVLDILNVFW 232
Query: 252 FSKIVKGLVKTLAKQ 266
KI +G K + +
Sbjct: 233 MYKIARGFYKVVKAK 247
>sp|Q6P4N1|TMM56_XENTR Transmembrane protein 56 OS=Xenopus tropicalis GN=tmem56 PE=2 SV=1
Length = 259
Score = 77.8 bits (190), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 109/251 (43%), Gaps = 15/251 (5%)
Query: 23 LVPYTSIVGSIFACKMVYDLAQLISAVHFKSYSS----FSNIQRVEWSNRAISTVHAIFI 78
+ Y + GS ++++ +IS F YSS S ++ EW +R +ST HA+ +
Sbjct: 6 FISYCVVTGSFLGFQLLF---SIISPRTFTKYSSTYRQLSFGKQCEWDSRCVSTTHALVV 62
Query: 79 TAMSLYFVFWSDLFLDNQLASLITFRSAFPSTFTLGVSVGYFLADLGMIIWFYPALGGME 138
+ LY L D + + + F + ++ GY + DL ++ F+ +
Sbjct: 63 GSGCLYI-----LAYDEAVNADPIWGDPFWVKMNVAITCGYLVHDLLLLARFWKVMRDPY 117
Query: 139 YVIHHLLSIAATACAMLTREAQFYTYMVLISETTTPGINLRWYLDKAGMKRSR-AYLING 197
V HHL + + ++ LISE +TP +N RW+ D G RS L+NG
Sbjct: 118 MVCHHLAVFYSYGYVLNRGVLPYFANFRLISELSTPFVNQRWFFDVIGKPRSSWPVLLNG 177
Query: 198 ILMFLAWLVVRILFFMYIFYHIYLHVDQVKQCRTCV--QILVFSVPVVLFIMNAVWFSKI 255
+ M L + +VRI + ++ R + Q+ VVL I+N W KI
Sbjct: 178 LAMALVFFIVRIAVIPSYYSQVFATFGTEGYIRLGIGPQVAWIVSCVVLDILNVFWMYKI 237
Query: 256 VKGLVKTLAKQ 266
+G K + +
Sbjct: 238 ARGFYKVVKAK 248
>sp|Q5XIY2|TM56B_DANRE Transmembrane protein 56-B OS=Danio rerio GN=tmem56b PE=2 SV=1
Length = 264
Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 109/230 (47%), Gaps = 12/230 (5%)
Query: 42 LAQLISAVHFKSYSSFSNIQRVEWSNRAISTVHAIFITAMSLYFVFWSDLFLDNQLASLI 101
++ ++S+ + Y + +W++R +STVHA+ + LY +++ D ++ +
Sbjct: 23 VSPVLSSNFTQGYGKLPPNKLNDWNSRLVSTVHALIVGLFCLYILWYDDAVNEDPVW--- 79
Query: 102 TFRSAFPSTFTLGVSV--GYFLADLGMIIWFYPALGGMEYVIHHLLSIAATACAMLTREA 159
P+ L V++ GY DL ++ + +G + +V HHL ++ A +
Sbjct: 80 ----GDPNLVKLNVAITCGYLFYDLLLLACNWSTMGDVFFVCHHLAALYAYGYVLTRGVL 135
Query: 160 QFYTYMVLISETTTPGINLRWYLDKAGMKRSRAYLI-NGILMFLAWLVVRILFFMYIFYH 218
++ LISE +TP +N RW+ + R+ ++ NGI M + + +VRI +
Sbjct: 136 PYFANFRLISELSTPFVNQRWFFEALAYPRTHQLVVANGIAMAVVFFLVRIAVMPPYWAK 195
Query: 219 IY--LHVDQVKQCRTCVQILVFSVPVVLFIMNAVWFSKIVKGLVKTLAKQ 266
++ ++ ++ +Q+ V L I+N +W KI +G K + +
Sbjct: 196 VFGIIYSPTFEKLGLAIQVAWIISCVCLDILNIIWMYKIARGCYKVITGK 245
>sp|Q550S9|TM56B_DICDI Transmembrane protein 56 homolog B OS=Dictyostelium discoideum
GN=tmem56b PE=3 SV=1
Length = 257
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 91/174 (52%), Gaps = 14/174 (8%)
Query: 42 LAQLISAVHFKSYSSFSNIQRVEWSNRAISTVHAIFITAMSLYFVFWSDLFLDNQLASLI 101
L ++I + K+ F +R+EW NR ISTV+AI +A+S+Y +++++ ++ N L S
Sbjct: 26 LPKIIEIIFKKNNIGFYERKRIEWPNRIISTVNAIVTSALSIYCLYYNE-WIVNSLRS-- 82
Query: 102 TFRSAFPSTFTLGVSVGYFLADLGMIIWFYPALGGMEYVIHH---LLSIAATACAMLTRE 158
++ S F YF+ D + ++ L ++HH LLS L
Sbjct: 83 ---TSEMSYFIFKFITYYFIYDFIISSYYSKYLFTWGNLLHHTIALLSFTFLGGKGLAHH 139
Query: 159 AQF-YTYMVLISETTTPGINLRWYLDKAGMKRSRAYLINGILMFLAWLVVRILF 211
YT+ +E TTP INLR++L +K Y+ING+L+F+ +++ R+ +
Sbjct: 140 LLLSYTF----TEITTPLINLRFFLLDLNLKNHPLYVINGLLIFVGFVLFRVFY 189
>sp|Q550T0|TM56A_DICDI Transmembrane protein 56 homolog A OS=Dictyostelium discoideum
GN=tmem56a PE=3 SV=1
Length = 258
Score = 61.6 bits (148), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 104/217 (47%), Gaps = 14/217 (6%)
Query: 53 SYSSFSNIQRVEWSNRAISTVHAIFITAMSLYFVFWSDLFLDNQLASLITFRSAFPSTFT 112
SYSS ++EW+N+ ++T+ +I ++S Y ++ ++ N++ S S F
Sbjct: 44 SYSS-----KIEWTNKIVATISSIVSFSLSCYCIYNKKSWVTNEMTSTCAL-----SDFI 93
Query: 113 LGVSVGYFLADLGMIIWFYPALGGMEYVIHHLLS--IAATACAMLTREAQFYTYMVLISE 170
L YFL D +I +Y L +IHHL+ ++ + ++ L+ E
Sbjct: 94 LKFISFYFLFDALHLIIYYKQLFDWPIIIHHLVVGILSYVYIGLYYKKVHLTLLYFLLFE 153
Query: 171 TTTPGINLRWYLDKAGMKRSRAYLINGILMFLAWLVVRILFFMYIFYHIYLHVDQVKQCR 230
T P I+++W+L ++ Y ING +M ++ +R ++ IY ++ +
Sbjct: 154 ITNPFIHMKWFLKDLKLENHILYSINGFMMAFFFIFIRDIYVPIKVVKIY--INGYTELN 211
Query: 231 TCVQILVFSVPVVLFIMNAVWFSKIVKGLVKTLAKQQ 267
+ ++F ++ I+N W ++KG++K L++ +
Sbjct: 212 SIANTIIFFCFPIITILNLFWTYLVIKGILKHLSRTK 248
>sp|Q1LXV8|TM136_DANRE Transmembrane protein 136 OS=Danio rerio GN=tmem136 PE=2 SV=1
Length = 242
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 7/147 (4%)
Query: 64 EWSNRAISTVHAIFITAMSLYFVFWSDLFLDNQLASLITFRSAFPSTFTLGVSVGYFLAD 123
EW+ R ++ H I I ++ Y F + + + + + TL +S+GYFL D
Sbjct: 32 EWNCRLVTLFHGILIICLTAYIGFIAGPWPFTHPGT----ENTYFQILTLVLSLGYFLFD 87
Query: 124 LGMIIWFYPALGGMEYVIHHLLSIAATACAMLTREAQFYTYMVLI-SETTTPGINLRWYL 182
+ ++F G + HH +SI A+ E+ T VL SE T P + RW+L
Sbjct: 88 MAWCVYFRTE--GPVMLAHHTMSIFGILLALGLGESGIETCAVLFGSEITNPLLQARWFL 145
Query: 183 DKAGMKRSRAYLINGILMFLAWLVVRI 209
+ G S A + +L L + VRI
Sbjct: 146 KRMGCYDSLAGDVVDLLFILLFASVRI 172
>sp|Q6ZRR5|TM136_HUMAN Transmembrane protein 136 OS=Homo sapiens GN=TMEM136 PE=2 SV=2
Length = 245
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 68/160 (42%), Gaps = 21/160 (13%)
Query: 36 CKMVYDLAQLISAVHFKSYSSFSNIQRVEWSNRAISTVHAIFITAMSLYFVFWSDLFLDN 95
C + L+ IS H + S+ EWS R ++ H + +S Y F +
Sbjct: 11 CSLCGWLSLYISFCHLNKHRSY------EWSCRLVTFTHGVLSIGLSAYIGFIDGPWPFT 64
Query: 96 QLASLITFRSAFPST----FTLGVSVGYFLADLGMIIWFYPALGGMEYVIHHLLSIAATA 151
S P+T L +++GYF+ DLG ++F G + HH LSI
Sbjct: 65 HPGS--------PNTPLQVHVLCLTLGYFIFDLGWCVYFQSE--GALMLAHHTLSILGII 114
Query: 152 CAMLTREAQFYTYMVLI-SETTTPGINLRWYLDKAGMKRS 190
A++ E+ VL SE T P + +RW+L + G S
Sbjct: 115 MALVLGESGTEVNAVLFGSELTNPLLQMRWFLRETGHYHS 154
>sp|Q3TYE7|TM136_MOUSE Transmembrane protein 136 OS=Mus musculus GN=Tmem136 PE=2 SV=1
Length = 245
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 62/145 (42%), Gaps = 15/145 (10%)
Query: 51 FKSYSSFSNIQRVEWSNRAISTVHAIFITAMSLYFVFWSDLFLDNQLASLITFRSAFPST 110
+ S+ + + EWS R ++ H + +S Y F + S P+T
Sbjct: 20 YTSFCCLNKHRSCEWSCRLVTFTHGVLSIGLSAYIGFIDGPWPFTHPGS--------PNT 71
Query: 111 ----FTLGVSVGYFLADLGMIIWFYPALGGMEYVIHHLLSIAATACAMLTREAQFYTYMV 166
L +++GYF+ DLG I+F G + HH LSI A+ E+ V
Sbjct: 72 PLQVHVLCLTLGYFIFDLGWCIYFQSE--GPLMLAHHTLSILGIIMALALGESGTEVNAV 129
Query: 167 LI-SETTTPGINLRWYLDKAGMKRS 190
L SE T P + +RW+L + G S
Sbjct: 130 LFGSEITNPLLQMRWFLRETGHYHS 154
>sp|O13752|YF22_SCHPO Uncharacterized TLC domain-containing protein C17A2.02c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC17A2.02c PE=4 SV=1
Length = 290
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/229 (20%), Positives = 100/229 (43%), Gaps = 13/229 (5%)
Query: 42 LAQLISAVHFKSYSSFSNIQRVEWSNRAISTVHAIFITAMSLYFVFWSDLFLDNQLASLI 101
L+ +IS Y+ S R+ W +S+V +I + + + + F D +
Sbjct: 56 LSPVISRHLSTHYAKLSKKTRLNWDAHVVSSVQSIVLICLGYTCLKEVNAFPDKLFGYSV 115
Query: 102 TFRSAFPSTFTLGVSVGYFLADLGMIIWFYPALGGMEYVIHHLLSIAATACAMLTREA-- 159
+ ++ GYF+ DL + + Y + G+ +VIH +IAA +
Sbjct: 116 VAGDIY------ALTAGYFVWDLYITV-RYVHITGIGFVIH---AIAALFVITFSYRPYL 165
Query: 160 QFYTYMVLISETTTPGINLRWYLDKAGMKRSRAYLINGILMFLAWLVVRILFFMYIFYHI 219
+Y L E +TP +N+ ++LDK S+ +ING ++ + ++ VRI + + Y
Sbjct: 166 MYYGPTYLSWELSTPFLNIHYFLDKTNRTGSKFQMINGFILIVTFICVRIAWGWFSAYST 225
Query: 220 YLHV-DQVKQCRTCVQILVFSVPVVLFIMNAVWFSKIVKGLVKTLAKQQ 267
+ + + + + + + + L +N W SK++ + + ++
Sbjct: 226 AIEILNHINVAPWALSLFYLAANMSLNCLNLFWVSKMIDAIRRRAHGEK 274
>sp|Q0VD42|TM136_BOVIN Transmembrane protein 136 OS=Bos taurus GN=TMEM136 PE=2 SV=1
Length = 245
Score = 47.8 bits (112), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 62/143 (43%), Gaps = 15/143 (10%)
Query: 53 SYSSFSNIQRVEWSNRAISTVHAIFITAMSLYFVFWSDLFLDNQLASLITFRSAFPST-- 110
S+ + + EW+ R ++ H I +S Y F + S P+T
Sbjct: 22 SFCRLNKHRSYEWNCRLVTFTHGILSIGLSAYIGFIDGPWPFTHPGS--------PNTPL 73
Query: 111 --FTLGVSVGYFLADLGMIIWFYPALGGMEYVIHHLLSIAATACAMLTREAQFYTYMVLI 168
L +++GYF+ DLG I+F G + HH LSI A++ E+ VL
Sbjct: 74 QVHVLCLTLGYFIFDLGWCIYFRSE--GPLMLAHHTLSILGIIVALVLGESGTEVNAVLF 131
Query: 169 -SETTTPGINLRWYLDKAGMKRS 190
SE T P + +RW+L + G S
Sbjct: 132 GSEITNPLLQIRWFLRETGHYHS 154
>sp|P47153|TDA4_YEAST Topoisomerase I damage affected protein 4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TDA4 PE=1
SV=1
Length = 279
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 80/157 (50%), Gaps = 15/157 (9%)
Query: 118 GYFLADLGMIIWFYPALGGMEYVIHHLLSIAATACAMLTREAQFYTYMVLISETTTPGIN 177
GYF+ DL M + ++ L G+E+ H + S+ + L Q + LI E +TP +N
Sbjct: 121 GYFIWDLTMCVRYF-KLYGLEFTGHAIGSVYVMLLS-LRPFCQPWIGRFLIYEASTPFVN 178
Query: 178 LRWYLDKAGMKRSRA-----YLINGILMFLAWLVVRILF----FMYIFYHIYLHVDQVKQ 228
+ W++ + K + ++NG+L+ + VVRI + +F ++ D++ +
Sbjct: 179 INWFIMQCNAKSKNSIPLWFNVVNGLLLMTVFFVVRICWGSIASALLFRQMWKVRDELPK 238
Query: 229 CRTCVQILVFSVPVVLFIMNAVWFSKIVKGLVKTLAK 265
+ + S+ + + ++N +WF K+++ + K LAK
Sbjct: 239 FSA---VTMMSLNIFMNLLNVLWFKKMIR-IAKKLAK 271
>sp|Q55BP8|TM56C_DICDI Transmembrane protein 56 homolog B OS=Dictyostelium discoideum
GN=tmem56c PE=3 SV=1
Length = 272
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 66/144 (45%), Gaps = 18/144 (12%)
Query: 52 KSYSSFSNIQRVEWSNRAISTVHAIFITAMSLYFVF----WSDLFLDNQLASLITFRSAF 107
K+Y++ + +++EW R +S +HA + + + D+F + L+
Sbjct: 53 KAYTTLTEKKKLEWDQRVVSMIHAFLVLPFCIISAVESFKYGDIFYFQNDSLLM------ 106
Query: 108 PSTFTLGVSVGYFLADLGMIIWFYPALGGMEYVIHHLLSIAATACAMLTREAQFYTYMV- 166
L +S GYF+ DL +I + P L G +IH ++ +++ L + +V
Sbjct: 107 ----VLSISSGYFIWDL-IICYKDPKLVGTPMIIHAIMGLSSNIYVALPHGRPCFVPIVA 161
Query: 167 --LISETTTPGINLRWYLDKAGMK 188
LI+E +T +N++ ++ K
Sbjct: 162 ILLITEISTIPLNMKGFIQVVNSK 185
>sp|Q06107|YP114_YEAST Uncharacterized TLC domain-containing protein YPR114W
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=YPR114W PE=1 SV=1
Length = 315
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 94/222 (42%), Gaps = 41/222 (18%)
Query: 71 STVHAIFITAMSLYFVFWSDLFLDNQLASLITFRSAFPSTFTLG--------VSVGYFLA 122
S+VH I + S+ +++S FL + AS ++++ FT ++GYF+
Sbjct: 100 SSVHLISLL-QSIVVLYYSLKFLLDPKASAEPYQTSHSRVFTENRDTQVICIFAIGYFVW 158
Query: 123 DLGMIIWFYPALGGMEYVIHHLLSIAATACAMLTREAQFYTYMVLISETTTPGINLRWYL 182
D I+ +V+H ++S C L Q+Y + L+ E + P +N RW+
Sbjct: 159 D----IYISTMYSTFPFVVHGIIS-TVVFCIGLKPYIQYYAPVFLMFELSNPSLNFRWFG 213
Query: 183 DKAGMKRSR-------AYLINGILMF----LAWLVVRILFFMYIFYHIYLHVDQVKQCRT 231
K ++S+ + +++F +AW +I Y FY Q R
Sbjct: 214 IKFLPQKSKFCSLLLLLNNLTLMVVFFAARIAWGWFQIGKLCYDFY----------QVRN 263
Query: 232 CVQILVFSVPV------VLFIMNAVWFSKIVKGLVKTLAKQQ 267
LVF V VL I+N +WFS +V K L K +
Sbjct: 264 EPGFLVFDTIVILAGNFVLDILNVIWFSTMVSVAAKVLKKGE 305
>sp|A8WGS4|TLCD2_DANRE TLC domain-containing protein 2 OS=Danio rerio GN=tlcd2 PE=2 SV=1
Length = 246
Score = 39.7 bits (91), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 11/149 (7%)
Query: 64 EWSNRAISTVHAIFITAMSLYFVFWSDLF--LDNQLA-SLITFRSAFPSTFTLGVSVGYF 120
+W+N + S VH++ IT + WS L + Q+A LI S F + VS+GYF
Sbjct: 39 KWNNISTSFVHSL-ITGV------WSVLCFCMHPQMAEDLIETHSVFSHAL-VSVSIGYF 90
Query: 121 LADLGMIIWFYPALGGMEYVIHHLLSIAATACAMLTREAQFYTYMVLISETTTPGINLRW 180
+ D ++ + E + HH++ I ++LT + + L+ E + ++LR
Sbjct: 91 IYDFLDMVINQKIIHSWELLFHHVVVITCFGISVLTCRYVGFAVVALLVEINSVFLHLRQ 150
Query: 181 YLDKAGMKRSRAYLINGILMFLAWLVVRI 209
L A + +S Y +N ++ ++V RI
Sbjct: 151 VLRMANLAKSTFYRVNSMINLGTYVVFRI 179
>sp|Q7TNV1|FA57B_MOUSE Protein FAM57B OS=Mus musculus GN=Fam57b PE=2 SV=2
Length = 275
Score = 36.2 bits (82), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 35/60 (58%)
Query: 158 EAQFYTYMVLISETTTPGINLRWYLDKAGMKRSRAYLINGILMFLAWLVVRILFFMYIFY 217
+ F+ +L++E +TP + L L + + + + +NG LM L++L R+L F Y+++
Sbjct: 154 KGDFFLGCMLMAEVSTPFVCLGKILIQYKQQHTLLHKVNGALMLLSFLCCRVLLFPYLYW 213
>sp|Q71RH2|FA57B_HUMAN Protein FAM57B OS=Homo sapiens GN=FAM57B PE=2 SV=1
Length = 274
Score = 35.8 bits (81), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 35/60 (58%)
Query: 158 EAQFYTYMVLISETTTPGINLRWYLDKAGMKRSRAYLINGILMFLAWLVVRILFFMYIFY 217
+ F+ +L++E +TP + L L + + + + +NG LM L++L R+L F Y+++
Sbjct: 154 KGDFFLGCMLMAEVSTPFVCLGKILIQYKQQHTLLHKVNGALMLLSFLCCRVLLFPYLYW 213
>sp|Q9UBY8|CLN8_HUMAN Protein CLN8 OS=Homo sapiens GN=CLN8 PE=1 SV=3
Length = 286
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 55/125 (44%), Gaps = 4/125 (3%)
Query: 140 VIHHLLSIAATACAMLTREAQFYTYMV-LISETTTPGINLRWYLDKAGMKRSRAYLINGI 198
VIHHL + ++ +A Y M L+ E +TP + W L KAG S + +N
Sbjct: 136 VIHHLFAFLGFLGCLVNLQAGHYLAMTTLLLEMSTPFTCVSWMLLKAGWSESLFWKLNQW 195
Query: 199 LMFLAWLVVRILFFMYIFYHIYLHVDQVKQCRTCVQILVFSVPVVL--FIMNAVWFSKIV 256
LM R++ ++++ + H D + + +F V + L I+N W K
Sbjct: 196 LMIHM-FHCRMVLTYHMWWVCFWHWDGLVSSLYLPHLTLFLVGLALLTLIINPYWTHKKT 254
Query: 257 KGLVK 261
+ L+
Sbjct: 255 QQLLN 259
>sp|Q8TBR7|FA57A_HUMAN Protein FAM57A OS=Homo sapiens GN=FAM57A PE=1 SV=2
Length = 257
Score = 32.3 bits (72), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 13/116 (11%)
Query: 159 AQFYTYMVLISETTTPGINLRWYLDKAGMKRSRAYLINGILMFLAWLVVRILFFMYIFYH 218
F+ + +E +TP ++L L + + + Y +NGIL +L RIL F ++++
Sbjct: 143 GDFFVGCIFTAELSTPFVSLGRVLIQLKQQHTLLYKVNGILTLATFLSCRILLFPFMYWS 202
Query: 219 IYLHVDQVKQCRTCVQILVFSVPVVLFIMNAV-------WFSKIVKGLVKTLAKQQ 267
+Q + +Q+ FS+P + NA WF + + V+ Q
Sbjct: 203 Y-----GRQQGLSLLQV-PFSIPFYCNVANAFLVAPQIYWFCLLCRKAVRLFDTPQ 252
>sp|P43993|Y392_HAEIN Uncharacterized protein HI_0392 OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_0392 PE=3 SV=1
Length = 245
Score = 31.2 bits (69), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 64 EWSNRAISTVHAIFITAMSLYFVFWSDLFLDNQLASL---ITFRSAFPSTFTLGVSVGYF 120
++ R I ++ FIT M+L S +F+ N L I AF S F LG++ GYF
Sbjct: 29 QFYTRRIKRIYPAFITVMALVSFIASAIFIYNDFNKLRKTIELAIAFLSNFYLGLTQGYF 88
>sp|Q5ND56|FA57A_MOUSE Protein FAM57A OS=Mus musculus GN=Fam57a PE=2 SV=1
Length = 257
Score = 31.2 bits (69), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 57/128 (44%), Gaps = 16/128 (12%)
Query: 140 VIHH---LLSIAATACAMLTREAQFYTYMVLISETTTPGINLRWYLDKAGMKRSRAYLIN 196
V HH LL + + + F+ + +E +TP ++L + + + + Y +N
Sbjct: 121 VTHHTVILLFLVPISQKLRGDLGDFFVGCIFTAELSTPFVSLARIMIQLKQQHTLLYKVN 180
Query: 197 GILMFLAWLVVRILFFMYIFYHIYLHVDQVKQCRTCVQILVFSVPVVLFIMNAV------ 250
GIL +L RIL F ++++ +Q + + F++P+ + NAV
Sbjct: 181 GILTVTTFLFCRILLFPFMYW------SYGQQKGLSLLQVPFNIPLHCNMANAVLISPQL 234
Query: 251 -WFSKIVK 257
WFS + K
Sbjct: 235 YWFSLLCK 242
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.331 0.140 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,544,000
Number of Sequences: 539616
Number of extensions: 3113362
Number of successful extensions: 8858
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 8803
Number of HSP's gapped (non-prelim): 47
length of query: 267
length of database: 191,569,459
effective HSP length: 115
effective length of query: 152
effective length of database: 129,513,619
effective search space: 19686070088
effective search space used: 19686070088
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 60 (27.7 bits)