Query 024448
Match_columns 267
No_of_seqs 178 out of 837
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 04:41:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024448.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024448hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4561 Uncharacterized conser 100.0 5.5E-47 1.2E-51 328.2 3.6 258 3-266 6-270 (281)
2 smart00724 TLC TRAM, LAG1 and 100.0 2.8E-35 6.2E-40 249.9 19.0 200 60-263 1-204 (205)
3 PF03798 TRAM_LAG1_CLN8: TLC d 100.0 8.9E-35 1.9E-39 244.4 19.1 193 64-257 1-198 (198)
4 KOG4474 Uncharacterized conser 100.0 3.1E-28 6.7E-33 207.0 13.0 197 56-260 37-234 (253)
5 KOG1607 Protein transporter of 99.5 3.2E-12 7E-17 113.3 18.1 209 54-265 78-291 (318)
6 COG5058 LAG1 Protein transport 99.3 1.4E-11 2.9E-16 108.1 11.4 204 58-265 150-369 (395)
7 PF14018 DUF4234: Domain of un 82.0 15 0.00032 25.6 8.3 54 211-264 14-73 (75)
8 KOG1608 Protein transporter of 65.0 1.1E+02 0.0023 27.7 17.4 175 29-219 87-272 (374)
9 PRK10582 cytochrome o ubiquino 42.9 80 0.0017 24.0 5.4 61 21-87 38-100 (109)
10 TIGR02847 CyoD cytochrome o ub 42.8 1E+02 0.0022 22.9 5.8 59 23-87 29-89 (96)
11 TIGR02901 QoxD cytochrome aa3 34.9 1.4E+02 0.0031 22.0 5.6 60 22-87 30-91 (94)
12 COG3311 AlpA Predicted transcr 31.2 36 0.00078 23.7 1.8 28 168-195 6-33 (70)
13 PF02674 Colicin_V: Colicin V 20.5 4E+02 0.0086 20.4 6.8 32 56-87 86-117 (146)
14 PF06423 GWT1: GWT1; InterPro 20.1 4.3E+02 0.0093 20.6 7.9 43 30-72 6-48 (136)
No 1
>KOG4561 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=5.5e-47 Score=328.22 Aligned_cols=258 Identities=33% Similarity=0.587 Sum_probs=221.3
Q ss_pred hhhHHHHHHHHhhhhccCCCCccHHHHHHHHHHHHHHHHHH---HHhHhhhhccccCCCccccccee-ehhhHHHHHHHH
Q 024448 3 VKSYQSQAESLLKEYILADPLVPYTSIVGSIFACKMVYDLA---QLISAVHFKSYSSFSNIQRVEWS-NRAISTVHAIFI 78 (267)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v~~ls---~~ls~~~~k~y~~l~~~~~~~w~-~r~vS~vHa~v~ 78 (267)
.+++..+.+.++.....+.+.++.+....++++|+.+|+++ +..|+...++|.++++++|++|| +|++|++|++++
T Consensus 6 ~~~~~~~~s~~v~~~~~~~~~~~l~~~~~~~l~~~v~y~~~~~~~~~s~s~~~~~~~l~~k~~i~wn~~~~Vs~~hslv~ 85 (281)
T KOG4561|consen 6 LPARIGLTSELVKLSLGAIFFVLLTAHCHGILFYFVVYQLCNVIHNISVSLSHTYRSLDKKLKIEWNCVRVVSTVHSLVS 85 (281)
T ss_pred CCCcccccchhhhhccchHHHHHHHHHHHHHHHHhhhhhhhceehheeehhhhhHhhhcCcEEEEEecCceeeeehHhhh
Confidence 45666778889999999999999999999999999999999 88888888999999999999999 999999999998
Q ss_pred HHHHHHHHhhccccc-ccccccccccCCCchhhhHHHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhhccc
Q 024448 79 TAMSLYFVFWSDLFL-DNQLASLITFRSAFPSTFTLGVSVGYFLADLGMIIWFYPALGGMEYVIHHLLSIAATACAMLTR 157 (267)
Q Consensus 79 ~~~a~~~l~~~~l~~-~~~~~d~i~~~~s~~~~~~~~~s~GYFl~Dl~~~~~~~~~~~~~~~l~HH~~~l~~~~~~~~~~ 157 (267)
+ ++|+++.++.|. |++..+...++.+...... .|||++|+..+.++++..+|.+|++||+++++........|
T Consensus 86 ~--s~y~lf~~~~f~yD~~~~~~~~~~~~~~~~~g----~gy~i~dl~~i~~~~~~~~~~~fviHh~~s~~~v~~~~~~~ 159 (281)
T KOG4561|consen 86 S--SLYFLFGTPYFHYDKATGYSVVWSKHRDTSVG----IGYFIPDLTWIIVRYFVLGGIEFVIHHIASLVFVGCLLRRG 159 (281)
T ss_pred c--ccceeecCcccchhhhhccceeecceeecccc----ceEecccceeEEEEeeeecCeeEEeeHHHHhhhheeeEecC
Confidence 7 889888776665 5554443323333222222 55999999877777888999999999999844444445678
Q ss_pred chhhHHHHHHHHhccchhhhHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhccccccchhHH
Q 024448 158 EAQFYTYMVLISETTTPGINLRWYLDKAGMKRSRAYLINGILMFLAWLVVRILFFMYIFYHIYL--HVDQVKQCRTCVQI 235 (267)
Q Consensus 158 ~~~~~~~~~ll~ElStPFLnlrw~L~~~g~~~s~~y~~n~~~~~~~Ff~~Ri~~~~~~~~~~~~--~~~~~~~~~~~~~~ 235 (267)
.+++++..++++|+||||+|+||+++++|+|+|++|.+||++++++|+++||+..|++.++.+. +..+.++.++..+.
T Consensus 160 ~g~y~~~~~L~~ElSTPFvnlrw~L~~~~~k~Sl~~~vNG~lm~~~F~v~RIll~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (281)
T KOG4561|consen 160 VGQYYAGTFLMAELSTPFVNLRWFLDKAGQKKSLFYKVNGLLLLVVFFVARILLWPYMGWHYYWRYQGLVLNQVPPFLPL 239 (281)
T ss_pred ccceeeeeeheeecCCceeeHHHHHHHcCcccchHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhchhHhH
Confidence 8999999999999999999999999999999999999999999999999999988999988873 33556778888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 024448 236 LVFSVPVVLFIMNAVWFSKIVKGLVKTLAKQ 266 (267)
Q Consensus 236 ~~~~~~~~l~~LN~~Wf~~i~k~~~k~l~k~ 266 (267)
.+++++++++++|+|||.||+|+++|.++|+
T Consensus 240 ~~l~~~~~L~v~Nl~Wf~km~~ga~K~~~~~ 270 (281)
T KOG4561|consen 240 FLLGLNALLLVLNLYWFSKMVRGALKVLKKA 270 (281)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999999999999999775
No 2
>smart00724 TLC TRAM, LAG1 and CLN8 homology domains. Protein domain with at least 5 transmembrane alpha-helices. Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis, TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. The family may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains.
Probab=100.00 E-value=2.8e-35 Score=249.87 Aligned_cols=200 Identities=24% Similarity=0.366 Sum_probs=170.3
Q ss_pred ccccceeehhhHHHHHHHHHHHHHHHHhhcccccccccccccccCCCchhhhHHHHHHHHHHHHHHHHHHhccccC--Cc
Q 024448 60 IQRVEWSNRAISTVHAIFITAMSLYFVFWSDLFLDNQLASLITFRSAFPSTFTLGVSVGYFLADLGMIIWFYPALG--GM 137 (267)
Q Consensus 60 ~~~~~w~~r~vS~vHa~v~~~~a~~~l~~~~l~~~~~~~d~i~~~~s~~~~~~~~~s~GYFl~Dl~~~~~~~~~~~--~~ 137 (267)
+|+.||++|++|.+||++++..+++.... ++|+..++|. .+.++..+...++++|||++|++++..+++..+ ++
T Consensus 1 ~k~~e~~~~~vs~~hs~~~~~~~~~~~~~---~~~~~~~~p~-~~~~~~~~~~~~~~~gYfi~d~~~~~~~~~~~~~d~~ 76 (205)
T smart00724 1 SKFNESSNRLVSYLHSVIAGLYALYSEPW---LSDPKSLYPI-QGMSPLAKFYYLFSLGYFIHDLVALLLFQDLKRKDFK 76 (205)
T ss_pred CchHHHHHHHHHHHHHHHHHHhhhccCCc---ccCCcccCCC-CCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHH
Confidence 47899999999999999999888776542 1222223554 678899999999999999999999986554433 79
Q ss_pred hHHHHHHHHHHHHHhhhcccchhhHHHHHHHHhccchhhhHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024448 138 EYVIHHLLSIAATACAMLTREAQFYTYMVLISETTTPGINLRWYLDKAGMKRSRAYLINGILMFLAWLVVRILFFMYIFY 217 (267)
Q Consensus 138 ~~l~HH~~~l~~~~~~~~~~~~~~~~~~~ll~ElStPFLnlrw~L~~~g~~~s~~y~~n~~~~~~~Ff~~Ri~~~~~~~~ 217 (267)
+|++||+++++++..+...+..+.+...++++|+||||+|+||++++.|.++++.+..|+.+++++|+++|++.+|+..+
T Consensus 77 ~~~~HHv~~~~~~~~~~~~~~~~~~~~~~~l~E~s~~fl~~~~~l~~~~~~~~~~~~~~~~~f~~~f~~~R~~~~p~~~~ 156 (205)
T smart00724 77 EMLVHHIATLLLISLSYVLNFTRLGLLLLLLHELSDPFLHLRKLLNYAGRKKSLLYDVNFVLFAVVFFVFRLILFPFLIL 156 (205)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888888888888899999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhccc--cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024448 218 HIYLHVDQVK--QCRTCVQILVFSVPVVLFIMNAVWFSKIVKGLVKTL 263 (267)
Q Consensus 218 ~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~LN~~Wf~~i~k~~~k~l 263 (267)
..+.+.++.. ..++.....+.+++.++++||++||++|+|+++|.+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ln~~Wf~~i~~~~~~~~ 204 (205)
T smart00724 157 TVTVHYAQAESGLFPPLLYLLFLLLLLCLQLLNIYWFFLILRMARKLL 204 (205)
T ss_pred HHHhhhhhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8876654322 134556677778889999999999999999999976
No 3
>PF03798 TRAM_LAG1_CLN8: TLC domain; InterPro: IPR006634 TLC is a protein domain with at least 5 transmembrane alpha-helices. Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis [], TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. Proteins containing this domain may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains [].; GO: 0016021 integral to membrane
Probab=100.00 E-value=8.9e-35 Score=244.36 Aligned_cols=193 Identities=30% Similarity=0.566 Sum_probs=159.8
Q ss_pred ceeehhhHHHHHHHHHHHHHHHHhhcccccccccccccccCCCchhhhHHHHHHHHHHHHHHHHHHhccccCC-chHHHH
Q 024448 64 EWSNRAISTVHAIFITAMSLYFVFWSDLFLDNQLASLITFRSAFPSTFTLGVSVGYFLADLGMIIWFYPALGG-MEYVIH 142 (267)
Q Consensus 64 ~w~~r~vS~vHa~v~~~~a~~~l~~~~l~~~~~~~d~i~~~~s~~~~~~~~~s~GYFl~Dl~~~~~~~~~~~~-~~~l~H 142 (267)
||++|++|++|+++++.+|++++..++.+.++.++++. .++++..+...++++|||++|++++....+..+| .+|++|
T Consensus 1 ~~~~~~~s~~h~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~gYf~~Dl~~~~~~~~~~~d~~~~~~H 79 (198)
T PF03798_consen 1 KWNNRVVSFVHAIVSSIWGLYILLNDPELWSDWPDDPW-YYSSWLVKFYYAFSLGYFLYDLIVMLLYYRKRGDFWEMLLH 79 (198)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHhcCcHHhhhcccCcc-CCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHH
Confidence 79999999999999999999999876311122222322 3445677779999999999999999976654444 899999
Q ss_pred HHHHHHHHHhhhcccchhhHHHHHHHHhccchhhhHHHHHHHc-CC-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024448 143 HLLSIAATACAMLTREAQFYTYMVLISETTTPGINLRWYLDKA-GM-KRSRAYLINGILMFLAWLVVRILFFMYIFYHIY 220 (267)
Q Consensus 143 H~~~l~~~~~~~~~~~~~~~~~~~ll~ElStPFLnlrw~L~~~-g~-~~s~~y~~n~~~~~~~Ff~~Ri~~~~~~~~~~~ 220 (267)
|++++.++..++..+.+++++..++++|+||||+|+||++++. |. ++++.+.+|+++++++|+++|++..|+..++.+
T Consensus 80 H~~~l~~~~~~~~~~~~~~~~~~~ll~E~st~fl~~r~~l~~~~~~~~~~~~~~~~~~~f~~~f~~~Ri~~~~~~~~~~~ 159 (198)
T PF03798_consen 80 HVVTLVLFYFSYFYNFGRFGIVVFLLHEISTPFLNLRWFLKYLGGYSKKSSLYRFNGVLFAVTFFVFRIVLFPYLIYWVY 159 (198)
T ss_pred HHHHHHHHHHhhHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988888899999999999999999999999999999 77 688999999999999999999999999888776
Q ss_pred hhhhc--cccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024448 221 LHVDQ--VKQCRTCVQILVFSVPVVLFIMNAVWFSKIVK 257 (267)
Q Consensus 221 ~~~~~--~~~~~~~~~~~~~~~~~~l~~LN~~Wf~~i~k 257 (267)
.+..+ .++.++.......++..++++||++||+||+|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ln~~W~~~i~r 198 (198)
T PF03798_consen 160 WDVWPLPLWKVPWPVPWIFLVLLLVLFVLNIYWFYLILR 198 (198)
T ss_pred HHhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 65432 12223455667778888899999999999987
No 4
>KOG4474 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.95 E-value=3.1e-28 Score=206.99 Aligned_cols=197 Identities=19% Similarity=0.269 Sum_probs=164.6
Q ss_pred CCCcccccceeehhhHHHHHHHHHHHHHHHHhhcccccccccccccccCCCchhhhHHHHHHHHHHHHHHHHHHhccccC
Q 024448 56 SFSNIQRVEWSNRAISTVHAIFITAMSLYFVFWSDLFLDNQLASLITFRSAFPSTFTLGVSVGYFLADLGMIIWFYPALG 135 (267)
Q Consensus 56 ~l~~~~~~~w~~r~vS~vHa~v~~~~a~~~l~~~~l~~~~~~~d~i~~~~s~~~~~~~~~s~GYFl~Dl~~~~~~~~~~~ 135 (267)
.+++.+|.+|.|+.||++||++++.++.+++..+ + +.-.||+ ...++.+..+.++|+|||++|+++|..+.....
T Consensus 37 ~~s~~~~~r~~n~~VSl~HS~Isg~~a~~~l~~~---~-~~~~~~~-~~~s~~~~~l~~fS~gYfiyD~vDm~~~~~s~~ 111 (253)
T KOG4474|consen 37 WFSVYQKKRFSNLTVSLLHSTISGLWALLSLLYD---P-EMVDDPI-TYHSLSAYQLLLFSAGYFIYDLVDMLMNEQSEL 111 (253)
T ss_pred eeccccchhhhhhHHHHHHHHHHHHHHHHHHHhC---c-ccccCHH-HHHhhhhHHHHHHHHHHHHHHHHHHHhcchhhh
Confidence 5677779999999999999999999999988754 2 3334555 345778889999999999999999997544445
Q ss_pred CchHHHHHHHHHHHHHhhhcccchhhHHHHHHHHhccchhhhHHHHHHHcCCCCC-hHHHHHHHHHHHHHHHHHHHHHHH
Q 024448 136 GMEYVIHHLLSIAATACAMLTREAQFYTYMVLISETTTPGINLRWYLDKAGMKRS-RAYLINGILMFLAWLVVRILFFMY 214 (267)
Q Consensus 136 ~~~~l~HH~~~l~~~~~~~~~~~~~~~~~~~ll~ElStPFLnlrw~L~~~g~~~s-~~y~~n~~~~~~~Ff~~Ri~~~~~ 214 (267)
.+|+++||++++.++..+++++.+..++.+.+++|+||||+|+|.+++.+|.+++ +.++++..++..+|+.+|++...|
T Consensus 112 s~e~LvHH~v~i~aF~~~lf~~~~~~~~~~~llmEv~SiFLH~R~il~l~g~s~~~~~~rv~v~lN~i~f~~fR~~~~~~ 191 (253)
T KOG4474|consen 112 SWEYLVHHVVCIIAFVLGLFYSKFLGYVVAALLMEVSSIFLHLRSILKLAGLSTTLPSFRVVVYLNLITFFFFRLIPQIY 191 (253)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHhcccee
Confidence 6899999999999999999999888899999999999999999999999998764 469999999999999999999888
Q ss_pred HHHHHhhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024448 215 IFYHIYLHVDQVKQCRTCVQILVFSVPVVLFIMNAVWFSKIVKGLV 260 (267)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LN~~Wf~~i~k~~~ 260 (267)
+.+....+. +..+.....+..++...+.+.|.+.+.++++.-.
T Consensus 192 l~~~~i~~~---~~~~~~~~~~~~gg~~~l~~~n~~l~~rll~sdg 234 (253)
T KOG4474|consen 192 LTYFLIANA---PFLHWYLKLFALGGLLCLAVINTVLTLRLLASDG 234 (253)
T ss_pred EEEEEeeeC---CCcceehhHHHhhhHHHHHHHHHHHHHHHHHhcc
Confidence 777655543 3333444455667888999999999999998763
No 5
>KOG1607 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=3.2e-12 Score=113.31 Aligned_cols=209 Identities=10% Similarity=0.146 Sum_probs=145.7
Q ss_pred ccCCCcccccceeehhhHHHHHHHHHHHHHHHHhhcccccccc---cccccccCCCchhhhHHHHHHHHHHHHHHHHHHh
Q 024448 54 YSSFSNIQRVEWSNRAISTVHAIFITAMSLYFVFWSDLFLDNQ---LASLITFRSAFPSTFTLGVSVGYFLADLGMIIWF 130 (267)
Q Consensus 54 y~~l~~~~~~~w~~r~vS~vHa~v~~~~a~~~l~~~~l~~~~~---~~d~i~~~~s~~~~~~~~~s~GYFl~Dl~~~~~~ 130 (267)
++.-+++.+.+.....=..+-=.++.+.|+|++..++-|.|.- .+-|. ....+.-.....+-+||...-+..+...
T Consensus 78 ~~~~~~~~~~k~~Es~Wk~~yy~~s~~~glyV~~~~~wf~~~k~~w~~yP~-~~~~~~~k~~Y~~e~gfY~~~l~al~~d 156 (318)
T KOG1607|consen 78 LNVTADRRKKKFCESAWKFLYYLVSWIFGLYVMYHEPWFYDTKSFWEGYPD-QTLPPSFKAYYLLEAGFYIQLLFALFLD 156 (318)
T ss_pred cCCcCchhhhhhHHHHHHHHHHHHHHHHhhhheecchhhcCHHHHHhcCCC-CCCCHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 3433444444455544455555566777888776532222111 11111 2234445566778889988888888765
Q ss_pred ccccCCchHHHHHHHHHHHHHhhhcccchhhHHHHHHHHhccchhhhHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHH
Q 024448 131 YPALGGMEYVIHHLLSIAATACAMLTREAQFYTYMVLISETTTPGINLRWYLDKAGMKRSRAYLINGILMFLAWLVVRIL 210 (267)
Q Consensus 131 ~~~~~~~~~l~HH~~~l~~~~~~~~~~~~~~~~~~~ll~ElStPFLnlrw~L~~~g~~~s~~y~~n~~~~~~~Ff~~Ri~ 210 (267)
..+.+-.+|++||++++..+..+...+....+.....+++.|.+++.+.++++..+.+ .+-...-++++..|+..|+.
T Consensus 157 ~~rkDf~~m~vHHvvTl~Li~lSy~~~f~R~G~lil~lhD~SD~~Le~~K~~nY~~~~--~~~~~~F~~F~~~wi~~RL~ 234 (318)
T KOG1607|consen 157 EKRKDFWEMVVHHVVTLILISLSYVFNFTRVGTLILALHDASDVFLELGKMLNYLQFE--AIADFVFVLFAFSWIYTRLI 234 (318)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhhhhcccceeeeeecchHHHHHHHHHHchhhHH--HHHHHHHHHHHHHHHHHHHH
Confidence 5544457999999999998888877777777788888999999999999998776655 56667788899999999988
Q ss_pred HHHHHHHHHhh--hhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024448 211 FFMYIFYHIYL--HVDQVKQCRTCVQILVFSVPVVLFIMNAVWFSKIVKGLVKTLAK 265 (267)
Q Consensus 211 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~LN~~Wf~~i~k~~~k~l~k 265 (267)
..|....+.-. +..+-...++..+++.+++...+++||+||++.|+|.+.|.+++
T Consensus 235 ~~p~wil~st~~~~~~~~~~~~~~~~~~~~~lL~~Lqll~i~W~~lI~rm~~r~~~~ 291 (318)
T KOG1607|consen 235 YYPFWILRSTSREDFSLRQYQPKPSYYFFNCLLLALQLLHIYWFYLILRMAYRVIKR 291 (318)
T ss_pred HHHHHHHHHhHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 87766543322 22221212345677788888999999999999999999999983
No 6
>COG5058 LAG1 Protein transporter of the TRAM (translocating chain-associating membrane) superfamily, longevity assurance factor [Intracellular trafficking and secretion]
Probab=99.33 E-value=1.4e-11 Score=108.07 Aligned_cols=204 Identities=13% Similarity=0.146 Sum_probs=139.3
Q ss_pred CcccccceeehhhHHHHHHHHHHHHHHHHhhccccc---cccccc-ccccCCCchhhhHHHHHHHHHHHHHHHHH--Hhc
Q 024448 58 SNIQRVEWSNRAISTVHAIFITAMSLYFVFWSDLFL---DNQLAS-LITFRSAFPSTFTLGVSVGYFLADLGMII--WFY 131 (267)
Q Consensus 58 ~~~~~~~w~~r~vS~vHa~v~~~~a~~~l~~~~l~~---~~~~~d-~i~~~~s~~~~~~~~~s~GYFl~Dl~~~~--~~~ 131 (267)
++++..++....-+..--.+.++.|+|++..++++. ++..++ |+ +++++.-.....+-.||-+....... ...
T Consensus 150 s~kkikRf~eq~y~~fyy~v~g~~Glyvmrss~~w~fntk~l~etyp~-~~~p~lfk~fYliqaafw~qQa~ilvLqlEk 228 (395)
T COG5058 150 SEKKIKRFCEQMYAIFYYGVSGPFGLYVMRSSPLWFFNTKALYETYPV-FYNPFLFKAFYLIQAAFWAQQACILVLQLEK 228 (395)
T ss_pred CHHHHHHHHHHHHHHHHhhccccceEEEEecCcchhhhhHHHHHhCcc-ccCcHHHHHHHHHHHHHHHHHHhhheeeecc
Confidence 444447788888888888888999999988776543 111122 33 55667777777888999988844433 345
Q ss_pred cccCCchHHHHHHHHHHHHHhhhcccchhhHHHHHHHHhccchhhhHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHH
Q 024448 132 PALGGMEYVIHHLLSIAATACAMLTREAQFYTYMVLISETTTPGINLRWYLDKAGMKRSRAYLINGILMFLAWLVVRILF 211 (267)
Q Consensus 132 ~~~~~~~~l~HH~~~l~~~~~~~~~~~~~~~~~~~ll~ElStPFLnlrw~L~~~g~~~s~~y~~n~~~~~~~Ff~~Ri~~ 211 (267)
|+.+-.+|+.||+++++.+..+...++..-.......+++|+|||.+.+.++..|- .+......+|+..|+-.|-..
T Consensus 229 prkD~~elv~HHIVTllLI~lSY~fhftr~GlAI~itmDvSD~~Ls~sK~lnYl~~---~l~~~iF~iFv~~wIysRHyl 305 (395)
T COG5058 229 PRKDFKELVFHHIVTLLLIWLSYVFHFTRMGLAIYITMDVSDFFLSLSKTLNYLNS---VLATFIFGIFVFIWIYSRHYL 305 (395)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhccceEEEEEeccHHHHHHHHHHHHhhc---hhHHHHHHHHHHHHHHHHHHH
Confidence 65556899999999998877666555555455566799999999999999888755 555556677888999999544
Q ss_pred HHHHHHHHhhhh---hc----cc--ccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024448 212 FMYIFYHIYLHV---DQ----VK--QCR-TCVQILVFSVPVVLFIMNAVWFSKIVKGLVKTLAK 265 (267)
Q Consensus 212 ~~~~~~~~~~~~---~~----~~--~~~-~~~~~~~~~~~~~l~~LN~~Wf~~i~k~~~k~l~k 265 (267)
..-..+..+... +. ++ +.. .....+..++...++.+|+||+..|+|.+.|.+..
T Consensus 306 n~kIlw~vlt~~r~~g~~~L~va~~qykcwisl~i~~iLl~aLQlvniyWl~lIvRvayRv~~~ 369 (395)
T COG5058 306 NLKILWSVLTAFRTIGNFVLDVATQQYKCWISLPIVFILLQALQLVNIYWLFLIVRVAYRVIWE 369 (395)
T ss_pred HHHHHHHHHhchhhcCceeeEeechhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 432222222211 11 11 111 12233455667789999999999999999998854
No 7
>PF14018 DUF4234: Domain of unknown function (DUF4234)
Probab=81.97 E-value=15 Score=25.59 Aligned_cols=54 Identities=11% Similarity=0.166 Sum_probs=32.4
Q ss_pred HHHHHHHHHhhhhhccc-----c-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024448 211 FFMYIFYHIYLHVDQVK-----Q-CRTCVQILVFSVPVVLFIMNAVWFSKIVKGLVKTLA 264 (267)
Q Consensus 211 ~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~l~~LN~~Wf~~i~k~~~k~l~ 264 (267)
.+.|..++++...++++ . .++......+...+...+.+++|++|+-+.+-+.+.
T Consensus 14 ~GIY~l~W~y~~~~~~~~~~~~~~~~~~~~~~lll~ilt~gi~~i~w~~k~~~~i~~~~~ 73 (75)
T PF14018_consen 14 CGIYGLYWLYKIWKELNQLTGRIISPRSMTLWLLLSILTCGIYSIYWAYKLGNRINEEAR 73 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666665543221 1 122233334444566789999999999998877654
No 8
>KOG1608 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.01 E-value=1.1e+02 Score=27.68 Aligned_cols=175 Identities=11% Similarity=0.191 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHH-HHHHhHhhhhccccCCCcccccceeehhhHHHHHHHHHHHHHHHHhhcccccccc--cccccccCC
Q 024448 29 IVGSIFACKMVYD-LAQLISAVHFKSYSSFSNIQRVEWSNRAISTVHAIFITAMSLYFVFWSDLFLDNQ--LASLITFRS 105 (267)
Q Consensus 29 v~~~~~~~~~v~~-ls~~ls~~~~k~y~~l~~~~~~~w~~r~vS~vHa~v~~~~a~~~l~~~~l~~~~~--~~d~i~~~~ 105 (267)
.+..++..+++|+ +-..+|+++ .+++-+..++|.-.-=.+.-..++++|.+++...+-.+|+. .++ +++
T Consensus 87 ~l~~IIiHAviQEyvLDKIsKr~-----hlSK~k~~kFnESgql~~Fy~~S~vwg~~ili~E~yl~~p~~lW~~---yPh 158 (374)
T KOG1608|consen 87 MLVAIIIHAVIQEYVLDKISKRL-----HLSKVKHSKFNESGQLVAFYLFSCVWGFYILISEGYLSDPTSLWEG---YPH 158 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-----hhhHhhhhhhccCCeeeehhhHHhhhhheeeeecccccChHHHHhc---CCC
Confidence 3445666666675 666677765 34554555555432222333455667777766432111111 111 232
Q ss_pred Cch---hhhHHHHHHHHHHHHHHHHHHhccccCC----chHHHHHHHHHHHHHhhhcccchhhHHHHHHHHhccchhh-h
Q 024448 106 AFP---STFTLGVSVGYFLADLGMIIWFYPALGG----MEYVIHHLLSIAATACAMLTREAQFYTYMVLISETTTPGI-N 177 (267)
Q Consensus 106 s~~---~~~~~~~s~GYFl~Dl~~~~~~~~~~~~----~~~l~HH~~~l~~~~~~~~~~~~~~~~~~~ll~ElStPFL-n 177 (267)
.+. ..+....-++|.+.-+-..........+ ..+.+-|+.-+.+. +.+ +.-+ .+...+..|-.|-++ |
T Consensus 159 ~~msfq~Kffyi~QlaYwlHafPElYfQK~Kkeeiprqlvyi~l~l~hI~gA-Yll--nl~r-lgLvLl~LhYftellfH 234 (374)
T KOG1608|consen 159 RVMSFQMKFFYISQLAYWLHAFPELYFQKTKKEEIPRQLVYIILHLFHIAGA-YLL--NLNR-LGLVLLTLHYFTELLFH 234 (374)
T ss_pred chhhHHHHHHHHHHHHHHHHHChHHHHHHHhhhhccHHHHHHHHHHHHHHHH-HHH--hhHH-HHHHHHHHHHHHHHHHH
Confidence 222 2333455667766666555432211222 23444444333322 222 2212 233444444444443 5
Q ss_pred HHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024448 178 LRWYLDKAGMKRSRAYLINGILMFLAWLVVRILFFMYIFYHI 219 (267)
Q Consensus 178 lrw~L~~~g~~~s~~y~~n~~~~~~~Ff~~Ri~~~~~~~~~~ 219 (267)
+..+..-.|.+..+.+.++. ..|++.|+..........
T Consensus 235 i~rlfyf~dek~~k~fslwa----~vF~l~Rl~tliiaVlt~ 272 (374)
T KOG1608|consen 235 IARLFYFSDEKYQKLFSLWA----AVFVLGRLGTLIIAVLTV 272 (374)
T ss_pred HHHHheecccchhHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 55555555666666666554 457778877654433333
No 9
>PRK10582 cytochrome o ubiquinol oxidase subunit IV; Provisional
Probab=42.88 E-value=80 Score=24.02 Aligned_cols=61 Identities=15% Similarity=0.257 Sum_probs=36.8
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHHHhHhhhhccccCCCcccccceee--hhhHHHHHHHHHHHHHHHHh
Q 024448 21 DPLVPYTSIVGSIFACKMVYDLAQLISAVHFKSYSSFSNIQRVEWSN--RAISTVHAIFITAMSLYFVF 87 (267)
Q Consensus 21 ~~~~~~~~v~~~~~~~~~v~~ls~~ls~~~~k~y~~l~~~~~~~w~~--r~vS~vHa~v~~~~a~~~l~ 87 (267)
...+|......-++.|+++|.+.+...- =.++.+++-+||. -+-+.+=..+...+++|++.
T Consensus 38 ~~~~~~~~~~~~i~~lA~vQi~VqL~~F------LHl~~~~~~~wn~~al~Ft~~i~~iiv~GSlWIM~ 100 (109)
T PRK10582 38 TGAASPAVILGTILAMAVVQILVHLVCF------LHMNTKSDEGWNMTAFVFTVLIIAILVVGSIWIMW 100 (109)
T ss_pred HccCChhHHHHHHHHHHHHHHHHHHHHH------hcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3455665556667777888887777633 3555544445554 44444445556667788775
No 10
>TIGR02847 CyoD cytochrome o ubiquinol oxidase subunit IV. Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant.
Probab=42.82 E-value=1e+02 Score=22.87 Aligned_cols=59 Identities=10% Similarity=0.174 Sum_probs=37.0
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHhHhhhhccccCCCccccccee--ehhhHHHHHHHHHHHHHHHHh
Q 024448 23 LVPYTSIVGSIFACKMVYDLAQLISAVHFKSYSSFSNIQRVEWS--NRAISTVHAIFITAMSLYFVF 87 (267)
Q Consensus 23 ~~~~~~v~~~~~~~~~v~~ls~~ls~~~~k~y~~l~~~~~~~w~--~r~vS~vHa~v~~~~a~~~l~ 87 (267)
.+|......-++.|+++|.+.+...-. .++++++-+|| +-+-+.+=..+...+++|++.
T Consensus 29 ~~~~~~~~~~i~~~A~iQi~vqL~~Fl------Hl~~~~~~~~n~~~l~Ft~~i~~iiv~GSiWIm~ 89 (96)
T TIGR02847 29 TLSKGLTLVIIIVLAVVQILVHLVFFL------HLNTSSEQRWNLISLLFTILIIFILIGGSIWIMH 89 (96)
T ss_pred cCCHhHHHHHHHHHHHHHHHHHHHHHh------hccCccccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356655566777888888887776333 44444444444 455555666666677888775
No 11
>TIGR02901 QoxD cytochrome aa3 quinol oxidase, subunit IV. This family (QoxD) encodes subunit IV of the aa3-type quinone oxidase, one of several bacterial terminal oxidases. This complex couples oxidation of reduced quinones with the reduction of molecular oxygen to water and the pumping of protons to form a proton gradient utilized for ATP production. aa3-type oxidases contain two heme a cofactors as well as copper atoms in the active site.
Probab=34.94 E-value=1.4e+02 Score=21.99 Aligned_cols=60 Identities=15% Similarity=0.061 Sum_probs=35.1
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHhHhhhhccccCCCcccccceeeh--hhHHHHHHHHHHHHHHHHh
Q 024448 22 PLVPYTSIVGSIFACKMVYDLAQLISAVHFKSYSSFSNIQRVEWSNR--AISTVHAIFITAMSLYFVF 87 (267)
Q Consensus 22 ~~~~~~~v~~~~~~~~~v~~ls~~ls~~~~k~y~~l~~~~~~~w~~r--~vS~vHa~v~~~~a~~~l~ 87 (267)
..+|......-++.++++|.+-+.. .+=.++++++-+||.- .-+.+=+.+...+++|++.
T Consensus 30 ~~~~~~~~~~~i~~lA~iQi~VqL~------~FLHm~~~~~~~~n~~~l~ft~~i~~i~v~GSlWIm~ 91 (94)
T TIGR02901 30 SDLPLAMGLTIIIIFAFIQAGLQLI------MFMHAGESEDGKVQIYNIYYSAFIALVTVFGSLWVMV 91 (94)
T ss_pred ccCChhHHHHHHHHHHHHHHHHHHH------HheeecCCcccchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456655666677788888777776 3345655555456653 3333444455556677654
No 12
>COG3311 AlpA Predicted transcriptional regulator [Transcription]
Probab=31.18 E-value=36 Score=23.73 Aligned_cols=28 Identities=21% Similarity=0.192 Sum_probs=23.7
Q ss_pred HHhccchhhhHHHHHHHcCCCCChHHHH
Q 024448 168 ISETTTPGINLRWYLDKAGMKRSRAYLI 195 (267)
Q Consensus 168 l~ElStPFLnlrw~L~~~g~~~s~~y~~ 195 (267)
.++.+++++.++..+.++|++.+.+|+.
T Consensus 6 ~~~~~~r~lrl~ev~~~~GlSrstiYr~ 33 (70)
T COG3311 6 EMRHTDRLLRLPEVAQLTGLSRSTIYRL 33 (70)
T ss_pred cccccchhhhHHHHHHHHCccHHHHHHH
Confidence 4577899999999999999998877654
No 13
>PF02674 Colicin_V: Colicin V production protein; InterPro: IPR003825 Colicin V is a small extracellular protein toxin which kills sensitive cells by disrupting their membrane potential []. Colicin V is produced from large low-copy plasmids and requires four plasmid genes for synthesis export and immunity [ 3034857). The cvaC gene is the structural gene for colicin V and cvaA and cvaB are required for processing and export of the toxin through the inner and outer membranes cvi confers immunity to the host cell. There are several stages at which host factors could play a role in colicin V production and mutations that alter any of these functions should result in lowered levels of extracellular colicin V ]. Colicin V production protein is required in Escherichia coli for colicin V production from plasmid pColV-K30 []. This entry represent the CvpA protein, which is involved in colicin V production. It is coded for by the cvpA gene, which is found upstream of the purF gene in the purF operon []. ; GO: 0009403 toxin biosynthetic process, 0016020 membrane
Probab=20.51 E-value=4e+02 Score=20.40 Aligned_cols=32 Identities=9% Similarity=0.242 Sum_probs=20.5
Q ss_pred CCCcccccceeehhhHHHHHHHHHHHHHHHHh
Q 024448 56 SFSNIQRVEWSNRAISTVHAIFITAMSLYFVF 87 (267)
Q Consensus 56 ~l~~~~~~~w~~r~vS~vHa~v~~~~a~~~l~ 87 (267)
+..++++.++-||....+-+.+.+..-.+.+.
T Consensus 86 ~~~~~~~~~~~dr~lG~~~G~~~~~li~~~~~ 117 (146)
T PF02674_consen 86 RIVKKPFLGWLDRLLGALLGLAKGLLILSLLL 117 (146)
T ss_pred HHhhcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33355677788888887777766655554333
No 14
>PF06423 GWT1: GWT1; InterPro: IPR009447 Glycosylphosphatidylinositol (GPI) is a conserved post-translational modification to anchor cell surface proteins to plasma membrane in eukaryotes. GWT1 is involved in GPI anchor biosynthesis; it is required for inositol acylation in yeast [].; GO: 0016746 transferase activity, transferring acyl groups, 0006506 GPI anchor biosynthetic process, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=20.10 E-value=4.3e+02 Score=20.61 Aligned_cols=43 Identities=16% Similarity=0.164 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhccccCCCcccccceeehhhHH
Q 024448 30 VGSIFACKMVYDLAQLISAVHFKSYSSFSNIQRVEWSNRAIST 72 (267)
Q Consensus 30 ~~~~~~~~~v~~ls~~ls~~~~k~y~~l~~~~~~~w~~r~vS~ 72 (267)
+.|+..|..+|.++..+.+.+++.-+...++++.+|-......
T Consensus 6 i~S~~GY~aIyl~g~~~G~~i~~~~~~~~~~~~~~~~~~~~~l 48 (136)
T PF06423_consen 6 IFSLPGYLAIYLIGVSLGRYILPPSSSSNSSSRRQWIKLLIKL 48 (136)
T ss_pred hhhHHHHHHHHHHHHHHhhhhhCCCCCccccchhHHHHHHHHH
Confidence 4578888889988888877776444443334445555554443
Done!