Query 024448
Match_columns 267
No_of_seqs 178 out of 837
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 08:25:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024448.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024448hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ksd_A Aerobic respiration con 10.1 4.9E+02 0.017 18.9 5.0 28 61-88 48-75 (115)
2 2k9p_A Pheromone alpha factor 10.1 2E+02 0.0068 19.5 2.7 28 180-211 40-67 (80)
3 3pbl_A D(3) dopamine receptor, 9.7 8.2E+02 0.028 20.9 8.0 55 209-263 412-466 (481)
4 4ev6_A Magnesium transport pro 8.9 6.1E+02 0.021 21.5 6.2 23 231-253 312-334 (339)
5 3eml_A Human adenosine A2A rec 7.6 1E+03 0.034 20.2 8.2 55 209-263 406-461 (488)
6 3uon_A Human M2 muscarinic ace 5.0 1.4E+03 0.047 19.2 7.2 62 199-264 392-453 (467)
7 2ls4_A High affinity copper up 6.8 1.5E+02 0.0053 15.6 0.0 12 112-123 10-21 (26)
8 2c9l_Y EB1, zebra, BZLF1 trans 4.4 3.6E+02 0.012 16.8 1.5 8 2-9 3-10 (63)
9 2au5_A Conserved domain protei 4.3 1.1E+03 0.037 17.0 5.2 55 21-80 12-72 (139)
10 2lx0_A Membrane fusion protein 4.2 5.6E+02 0.019 13.6 4.4 25 188-212 2-26 (32)
No 1
>2ksd_A Aerobic respiration control sensor protein ARCB; methods development, histidine kinase receptor, membrane domain, two-helical hairpin; NMR {Escherichia coli}
Probab=10.15 E-value=4.9e+02 Score=18.91 Aligned_cols=28 Identities=25% Similarity=0.313 Sum_probs=24.3
Q ss_pred cccceeehhhHHHHHHHHHHHHHHHHhh
Q 024448 61 QRVEWSNRAISTVHAIFITAMSLYFVFW 88 (267)
Q Consensus 61 ~~~~w~~r~vS~vHa~v~~~~a~~~l~~ 88 (267)
.+++|..-+-|.+.+.+++++++|.+..
T Consensus 48 G~v~~~Di~rsI~Fgli~aP~viYFls~ 75 (115)
T 2ksd_A 48 GQVESIDVIRSIFFGLLITPWAVYFLSV 75 (115)
T ss_dssp CCSSSSSCCSTTTHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688888889999999999999998763
No 2
>2k9p_A Pheromone alpha factor receptor; GPCR, micelle, structurral biology, fragment, G-protein COUP receptor, glycoprotein, membrane; NMR {Saccharomyces cerevisiae}
Probab=10.07 E-value=2e+02 Score=19.53 Aligned_cols=28 Identities=18% Similarity=0.624 Sum_probs=20.3
Q ss_pred HHHHHcCCCCChHHHHHHHHHHHHHHHHHHHH
Q 024448 180 WYLDKAGMKRSRAYLINGILMFLAWLVVRILF 211 (267)
Q Consensus 180 w~L~~~g~~~s~~y~~n~~~~~~~Ff~~Ri~~ 211 (267)
|++-+ .|+|+++.+|+..+++. +.|.+.
T Consensus 40 ~lltk--krrspiF~lN~~~L~l~--iirs~l 67 (80)
T 2k9p_A 40 WITSR--SRKTPIFIINQVSLFLI--ILHSAL 67 (80)
T ss_dssp HHHTC--CSCCCHHHHHHHHHHHH--HHHHHH
T ss_pred HHHhc--cccChhhHHHHHHHHHH--HHHHHH
Confidence 44444 67899999999998766 556554
No 3
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}
Probab=9.65 E-value=8.2e+02 Score=20.86 Aligned_cols=55 Identities=11% Similarity=0.087 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024448 209 ILFFMYIFYHIYLHVDQVKQCRTCVQILVFSVPVVLFIMNAVWFSKIVKGLVKTL 263 (267)
Q Consensus 209 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LN~~Wf~~i~k~~~k~l 263 (267)
+.+.||....++...................+..+-.++|.+=...+-+..+|.+
T Consensus 412 icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~L~~~ns~~NPiIY~~~~~~fR~~~ 466 (481)
T 3pbl_A 412 VCWLPFFLTHVLNTHCQTCHVSPELYSATTWLGYVNSALNPVIYTTFNIEFRKAF 466 (481)
T ss_dssp HHHHHHHHHHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHhhHHHHHHHHHhccccccCcHHHHHHHHHHHHHhhccchHHHHHcCHHHHHHH
Confidence 4466777665544332211122222222223333445566655444444444433
No 4
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=8.94 E-value=6.1e+02 Score=21.46 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=13.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHH
Q 024448 231 TCVQILVFSVPVVLFIMNAVWFS 253 (267)
Q Consensus 231 ~~~~~~~~~~~~~l~~LN~~Wf~ 253 (267)
+++++...+.+++..++-++||.
T Consensus 312 ~~gy~~~l~~m~~~~~~~~~~fk 334 (339)
T 4ev6_A 312 PQGFWLVMALMVVIIMIFVYIFR 334 (339)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666555553
No 5
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Probab=7.56 E-value=1e+03 Score=20.24 Aligned_cols=55 Identities=5% Similarity=0.124 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhhhhhc-cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024448 209 ILFFMYIFYHIYLHVDQ-VKQCRTCVQILVFSVPVVLFIMNAVWFSKIVKGLVKTL 263 (267)
Q Consensus 209 i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~LN~~Wf~~i~k~~~k~l 263 (267)
+.+.||....++..... ....+.....+...+..+-.++|.+-...+-+..+|.+
T Consensus 406 icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~~ 461 (488)
T 3eml_A 406 LCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTF 461 (488)
T ss_dssp HHHHHHHHHHHHHHHCTTSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHhhhHHHHHHHHhccCccccccHHHHHHHHHHHHHHhhhchhhhhhcCHHHHHHH
Confidence 45667666655443321 11222222233333334445666665555544444443
No 6
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Probab=4.95 E-value=1.4e+03 Score=19.17 Aligned_cols=62 Identities=11% Similarity=0.108 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024448 199 LMFLAWLVVRILFFMYIFYHIYLHVDQVKQCRTCVQILVFSVPVVLFIMNAVWFSKIVKGLVKTLA 264 (267)
Q Consensus 199 ~~~~~Ff~~Ri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LN~~Wf~~i~k~~~k~l~ 264 (267)
+.+++|++| +.||....++..... ...+.....+...+..+-.++|.+=...+-+..+|.++
T Consensus 392 ~iv~~F~ic---w~P~~i~~~~~~~~~-~~~~~~~~~i~~~L~~~ns~~NPiIY~~~~~~fR~~~~ 453 (467)
T 3uon_A 392 AILLAFIIT---WAPYNVMVLINTFCA-PCIPNTVWTIGYWLCYINSTINPACYALCNATFKKTFK 453 (467)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHCS-TTSCHHHHHHHHHHHHHTTTHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHH---HhHHHHHHHHHHHHh-cccchHHHHHHHHHHHHhhhhhhHHHHHcCHHHHHHHH
Confidence 334455554 667666555443321 11122222223333344456676655555555555443
No 7
>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=6.84 E-value=1.5e+02 Score=15.59 Aligned_cols=12 Identities=42% Similarity=0.836 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHH
Q 024448 112 TLGVSVGYFLAD 123 (267)
Q Consensus 112 ~~~~s~GYFl~D 123 (267)
+++-.+|||+++
T Consensus 10 vlGa~~Gyf~F~ 21 (26)
T 2ls4_A 10 AAGAGTGYFLFS 21 (26)
Confidence 455677888764
No 8
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=4.44 E-value=3.6e+02 Score=16.80 Aligned_cols=8 Identities=38% Similarity=0.891 Sum_probs=3.9
Q ss_pred hhhhHHHH
Q 024448 2 EVKSYQSQ 9 (267)
Q Consensus 2 ~~~~~~~~ 9 (267)
++|+|+|.
T Consensus 3 e~kryknr 10 (63)
T 2c9l_Y 3 EIKRYKNR 10 (63)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 34555553
No 9
>2au5_A Conserved domain protein; structural genomics, PSI, protein STR initiative, midwest center for structural genomics, MCSG, U function; 2.10A {Enterococcus faecalis} SCOP: a.244.1.1
Probab=4.28 E-value=1.1e+03 Score=17.00 Aligned_cols=55 Identities=18% Similarity=0.419 Sum_probs=41.5
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHHHhHhhhhccccCCCcc------cccceeehhhHHHHHHHHHH
Q 024448 21 DPLVPYTSIVGSIFACKMVYDLAQLISAVHFKSYSSFSNI------QRVEWSNRAISTVHAIFITA 80 (267)
Q Consensus 21 ~~~~~~~~v~~~~~~~~~v~~ls~~ls~~~~k~y~~l~~~------~~~~w~~r~vS~vHa~v~~~ 80 (267)
.|+..|+.+.-+|+.-.+.+..++.- .-|+..+|. +.-+|-...+...++++++.
T Consensus 12 ~PNF~Y~~~~~~FL~N~LAFs~G~~T-----~D~S~F~P~VL~~ME~~P~WL~Es~~~~Q~~iV~S 72 (139)
T 2au5_A 12 EPNFEYEEITRSFLSNMLAFTRGHFT-----GDISHFSPIVLAEMEKDPNWLEEAAGGMQGVIVQS 72 (139)
T ss_dssp -CCGGGHHHHHHHHHHHHHHHHHHHH-----CCCTTCCHHHHHHHHHCTTHHHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHhcccc-----cccccCCHHHHHHHhhCchHHHHHHHHhHHHHHHH
Confidence 68888988888999888777666553 567777653 45689999999999987654
No 10
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=4.22 E-value=5.6e+02 Score=13.57 Aligned_cols=25 Identities=24% Similarity=0.472 Sum_probs=15.4
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHH
Q 024448 188 KRSRAYLINGILMFLAWLVVRILFF 212 (267)
Q Consensus 188 ~~s~~y~~n~~~~~~~Ff~~Ri~~~ 212 (267)
|.+..-.+.|+.-.++|+.+-...+
T Consensus 2 khtiweviaglvalltflafgfwlf 26 (32)
T 2lx0_A 2 KHTIWEVIAGLVALLTFLAFGFWLF 26 (32)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566777777778766554433
Done!