Query 024448
Match_columns 267
No_of_seqs 178 out of 837
Neff 8.0
Searched_HMMs 13730
Date Mon Mar 25 08:25:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024448.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024448hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74d2 f.23.12.1 (D:12-45) IS 7.2 1.7E+02 0.012 14.8 3.0 16 245-260 6-21 (34)
2 d2iuba2 f.17.3.1 (A:286-349) M 5.9 2.2E+02 0.016 16.4 2.9 21 232-252 40-60 (64)
3 d2au5a1 a.244.1.1 (A:1-132) Hy 4.7 4.6E+02 0.034 17.1 5.2 55 21-80 9-69 (132)
4 d1i11a_ a.21.1.1 (A:) Sox-5 {M 4.5 1.1E+02 0.0077 18.1 0.6 22 46-67 33-54 (70)
5 d1td6a_ a.234.1.1 (A:) Hypothe 3.8 6E+02 0.044 19.0 4.8 41 18-61 66-106 (286)
6 d1jb0m_ f.23.19.1 (M:) Subunit 3.8 2.9E+02 0.021 13.5 3.1 26 187-212 3-28 (31)
7 d1hsma_ a.21.1.1 (A:) High mob 3.8 88 0.0064 19.0 -0.3 22 47-68 34-55 (79)
8 d2lefa_ a.21.1.1 (A:) Lymphoid 3.7 88 0.0064 19.4 -0.4 23 46-68 33-55 (86)
9 d1ckta_ a.21.1.1 (A:) High mob 3.7 1.2E+02 0.0085 17.8 0.3 23 46-68 34-56 (71)
10 d3b45a1 f.51.1.1 (A:91-270) Gl 3.2 6.8E+02 0.049 16.7 5.9 23 243-265 59-81 (180)
No 1
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=7.17 E-value=1.7e+02 Score=14.78 Aligned_cols=16 Identities=19% Similarity=0.216 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 024448 245 FIMNAVWFSKIVKGLV 260 (267)
Q Consensus 245 ~~LN~~Wf~~i~k~~~ 260 (267)
+.||+.||..+...+.
T Consensus 6 qfmnlltfgt~tg~al 21 (34)
T d2e74d2 6 QFMNLLAFGTVTGVAL 21 (34)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHH
Confidence 4567777766654443
No 2
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=5.85 E-value=2.2e+02 Score=16.36 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=8.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 024448 232 CVQILVFSVPVVLFIMNAVWF 252 (267)
Q Consensus 232 ~~~~~~~~~~~~l~~LN~~Wf 252 (267)
.+++...+.++++.+.-..||
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~f 60 (64)
T d2iuba2 40 WGYPVVLAVMGVIAVIMVVYF 60 (64)
T ss_dssp --CHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 3
>d2au5a1 a.244.1.1 (A:1-132) Hypothetical protein EF2947 {Enterococcus faecalis [TaxId: 1351]}
Probab=4.69 E-value=4.6e+02 Score=17.08 Aligned_cols=55 Identities=18% Similarity=0.419 Sum_probs=41.3
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHHHhHhhhhccccCCCcc------cccceeehhhHHHHHHHHHH
Q 024448 21 DPLVPYTSIVGSIFACKMVYDLAQLISAVHFKSYSSFSNI------QRVEWSNRAISTVHAIFITA 80 (267)
Q Consensus 21 ~~~~~~~~v~~~~~~~~~v~~ls~~ls~~~~k~y~~l~~~------~~~~w~~r~vS~vHa~v~~~ 80 (267)
.|+..|+.+.-+|+.-.+.+..++.- .-|+..+|. +.-+|-...+...++++++.
T Consensus 9 ~PNF~Y~~~~~~FL~N~LAFs~G~~T-----~D~S~F~P~VL~~ME~~P~WL~Es~~~~Q~~iV~S 69 (132)
T d2au5a1 9 EPNFEYEEITRSFLSNMLAFTRGHFT-----GDISHFSPIVLAEMEKDPNWLEEAAGGMQGVIVQS 69 (132)
T ss_dssp -CCGGGHHHHHHHHHHHHHHHHHHHH-----CCCTTCCHHHHHHHHHCTTHHHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHhcccc-----cccccCCHHHHHHHhhCchHHHHHHHHhHHHHHHH
Confidence 68888988888998888777666553 567777653 55689999999999987654
No 4
>d1i11a_ a.21.1.1 (A:) Sox-5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.48 E-value=1.1e+02 Score=18.15 Aligned_cols=22 Identities=14% Similarity=0.338 Sum_probs=15.4
Q ss_pred hHhhhhccccCCCcccccceee
Q 024448 46 ISAVHFKSYSSFSNIQRVEWSN 67 (267)
Q Consensus 46 ls~~~~k~y~~l~~~~~~~w~~ 67 (267)
+|+.+.+.++.|++.+|..|..
T Consensus 33 isk~lg~~Wk~ls~~eK~~y~~ 54 (70)
T d1i11a_ 33 ISKILGSRWKAMTNLEKQPYYE 54 (70)
T ss_dssp HHHHHHHHHTTSCSGGGHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHH
Confidence 3444455689999998877755
No 5
>d1td6a_ a.234.1.1 (A:) Hypothetical protein MPN330 {Mycoplasma pneumoniae [TaxId: 2104]}
Probab=3.84 E-value=6e+02 Score=19.04 Aligned_cols=41 Identities=17% Similarity=0.255 Sum_probs=25.8
Q ss_pred ccCCCCccHHHHHHHHHHHHHHHHHHHHhHhhhhccccCCCccc
Q 024448 18 ILADPLVPYTSIVGSIFACKMVYDLAQLISAVHFKSYSSFSNIQ 61 (267)
Q Consensus 18 ~~~~~~~~~~~v~~~~~~~~~v~~ls~~ls~~~~k~y~~l~~~~ 61 (267)
-|+.|.+|.+.| |.+- .+...+++-++..-+..|.+|++++
T Consensus 66 ELdspYlP~~li--s~F~-~a~~~~~~~l~e~~n~~lesL~~~e 106 (286)
T d1td6a_ 66 ELAAPYLPKPLV--SFFQ-SLLQLVNHDLLEQQNAALASLPAAK 106 (286)
T ss_dssp HTTCTTSCHHHH--HHHH-HHHHHHHHHHHHHHCGGGGGCCHHH
T ss_pred HhcCCccchhHH--HHHH-HHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 378999998543 3322 2344567777776666677777654
No 6
>d1jb0m_ f.23.19.1 (M:) Subunit XII of photosystem I reaction centre, PsaM {Synechococcus elongatus [TaxId: 32046]}
Probab=3.83 E-value=2.9e+02 Score=13.53 Aligned_cols=26 Identities=19% Similarity=0.217 Sum_probs=17.4
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHH
Q 024448 187 MKRSRAYLINGILMFLAWLVVRILFF 212 (267)
Q Consensus 187 ~~~s~~y~~n~~~~~~~Ff~~Ri~~~ 212 (267)
.+++..+....++.+-.+..+|+..-
T Consensus 3 lsdtqv~valvial~pg~lafrlate 28 (31)
T d1jb0m_ 3 LTDTQVYVALVIALLPAVLAFRLSTE 28 (31)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777776543
No 7
>d1hsma_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Hamster (Cricetulus griseus) [TaxId: 10029]}
Probab=3.76 E-value=88 Score=18.95 Aligned_cols=22 Identities=0% Similarity=0.030 Sum_probs=15.5
Q ss_pred HhhhhccccCCCcccccceeeh
Q 024448 47 SAVHFKSYSSFSNIQRVEWSNR 68 (267)
Q Consensus 47 s~~~~k~y~~l~~~~~~~w~~r 68 (267)
++.+.+.|+.|++.+|..|..+
T Consensus 34 ~k~~~~~W~~ls~~eK~~y~~~ 55 (79)
T d1hsma_ 34 AKKLGEMWNNTAADDKQPYEKK 55 (79)
T ss_dssp HHHHHHHHHTSCSTTTHHHHHH
T ss_pred HHHHhhHHhcCCHHHHHHHHHH
Confidence 3344456789999988887664
No 8
>d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.68 E-value=88 Score=19.44 Aligned_cols=23 Identities=9% Similarity=0.225 Sum_probs=17.4
Q ss_pred hHhhhhccccCCCcccccceeeh
Q 024448 46 ISAVHFKSYSSFSNIQRVEWSNR 68 (267)
Q Consensus 46 ls~~~~k~y~~l~~~~~~~w~~r 68 (267)
+|..+.+.|+.|++++|..|...
T Consensus 33 Isk~lg~~Wk~ls~~eK~~y~~~ 55 (86)
T d2lefa_ 33 INQILGRRWHALSREEQAKYYEL 55 (86)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHH
Confidence 44555567899999999888764
No 9
>d1ckta_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=3.67 E-value=1.2e+02 Score=17.83 Aligned_cols=23 Identities=9% Similarity=0.172 Sum_probs=16.1
Q ss_pred hHhhhhccccCCCcccccceeeh
Q 024448 46 ISAVHFKSYSSFSNIQRVEWSNR 68 (267)
Q Consensus 46 ls~~~~k~y~~l~~~~~~~w~~r 68 (267)
+++.+.+.|++|++.+|..|..+
T Consensus 34 i~k~~~~~Wk~ls~~eK~~y~~~ 56 (71)
T d1ckta_ 34 FSKKCSERWKTMSAKEKGKFEDM 56 (71)
T ss_dssp HHHHHHHHHHTCCTTTSHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHH
Confidence 44445567789999988877653
No 10
>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]}
Probab=3.23 E-value=6.8e+02 Score=16.72 Aligned_cols=23 Identities=17% Similarity=0.411 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 024448 243 VLFIMNAVWFSKIVKGLVKTLAK 265 (267)
Q Consensus 243 ~l~~LN~~Wf~~i~k~~~k~l~k 265 (267)
.....|+...+.+-+.+-|...+
T Consensus 59 ~Hl~~N~~~l~~~G~~lE~~~G~ 81 (180)
T d3b45a1 59 MHILFNLLWWWYLGGAVEKRLGS 81 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 34455555555555555554433
Done!