BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024450
         (267 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3A2E|A Chain A, Crystal Structure Of Ginkbilobin-2, The Novel Antifungal
           Protein From Ginkgo Biloba Seeds
 pdb|3A2E|B Chain B, Crystal Structure Of Ginkbilobin-2, The Novel Antifungal
           Protein From Ginkgo Biloba Seeds
 pdb|3A2E|C Chain C, Crystal Structure Of Ginkbilobin-2, The Novel Antifungal
           Protein From Ginkgo Biloba Seeds
 pdb|3A2E|D Chain D, Crystal Structure Of Ginkbilobin-2, The Novel Antifungal
           Protein From Ginkgo Biloba Seeds
          Length = 108

 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 55/108 (50%), Gaps = 6/108 (5%)

Query: 31  TNLVYRGCAEQKFPNPSEVYTQNLNTLLSSLVSRSSQETFNTTTS----GDEQTSITGLY 86
           T  V   C  QK P+ S  + +NL  +L+ L   ++   ++  TS    G   T+  G  
Sbjct: 3   TAFVSSACNTQKIPSGSP-FNRNLRAMLADLRQNTAFSGYDYKTSRAGSGGAPTAY-GRA 60

Query: 87  QCRGDLTTPECYTCVSKIPDLAYKLCSKAVAARVQLSGCYLKYEVIGF 134
            C+  ++  +C  C+S + +  + +C+ A+ ARVQL  C+++YE   F
Sbjct: 61  TCKQSISQSDCTACLSNLVNRIFSICNNAIGARVQLVDCFIQYEQRSF 108



 Score = 35.0 bits (79), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 4/81 (4%)

Query: 155 AAVFEQRRNTAFNMVTNGVKNSVELFYTGTYEHVYILGECEGDIASGNCGDCVKTATERA 214
           A + + R+NTAF+    G         +G     Y    C+  I+  +C  C+     R 
Sbjct: 27  AMLADLRQNTAFS----GYDYKTSRAGSGGAPTAYGRATCKQSISQSDCTACLSNLVNRI 82

Query: 215 KNECDDSISAQIYLNKCFISY 235
            + C+++I A++ L  CFI Y
Sbjct: 83  FSICNNAIGARVQLVDCFIQY 103


>pdb|2W4A|M Chain M, Isometrically Contracting Insect Asynchronous Flight
           Muscle
 pdb|2W4G|M Chain M, Isometrically Contracting Insect Asynchronous Flight
           Muscle Quick Frozen After A Quick Stretch Step
 pdb|2W4H|M Chain M, Isometrically Contracting Insect Asynchronous Flight
           Muscle Quick Frozen After A Quick Release Step
          Length = 840

 Score = 32.0 bits (71), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 22/120 (18%)

Query: 43  FPNPSEVYTQNLNTLLSSLVSRSSQETF-------NTTTSGDEQTSITGLYQCRGDLTTP 95
           F   S ++ +NLN L+++L  RS+   F        T T G  +  +  L+Q R      
Sbjct: 643 FQTVSALFRENLNKLMANL--RSTHPHFVRCIIPNETKTPGAMEHELV-LHQLR------ 693

Query: 96  ECYTCVSKIPDLAYKLCSKAVAARVQLSGCYLKYEVIGFSQVPETELLYKICGSTQVTGA 155
            C   +  I     ++C K   +RV  +    +Y V+  S +PE + +     S ++ G+
Sbjct: 694 -CNGVLEGI-----RICRKGFPSRVLYADFKQRYRVLNASAIPEGQFMDSKKASEKLLGS 747


>pdb|2MYS|A Chain A, Myosin Subfragment-1, Alpha Carbon Coordinates Only For
           The Two Light Chains
          Length = 843

 Score = 32.0 bits (71), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 22/121 (18%)

Query: 43  FPNPSEVYTQNLNTLLSSLVSRSSQETF-------NTTTSGDEQTSITGLYQCRGDLTTP 95
           F   S ++ +NLN L+++L  RS+   F        T T G  +  +  L+Q R      
Sbjct: 646 FQTVSALFRENLNXLMANL--RSTHPHFVRCIIPNETXTPGAMEHELV-LHQLR------ 696

Query: 96  ECYTCVSKIPDLAYKLCSKAVAARVQLSGCYLKYEVIGFSQVPETELLYKICGSTQVTGA 155
            C   +  I     ++C K   +RV  +    +Y V+  S +PE + +     S ++ G 
Sbjct: 697 -CNGVLEGI-----RICRKGFPSRVLYADFKQRYRVLNASAIPEGQFMDSKKASEKLLGG 750

Query: 156 A 156
            
Sbjct: 751 G 751


>pdb|1M8Q|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1M8Q|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1M8Q|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1M8Q|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1MVW|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1MVW|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1MVW|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1MVW|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1MVW|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1MVW|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O18|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O18|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O18|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O18|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O18|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O18|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O19|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O19|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O19|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O19|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O19|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O19|S Chain S, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O1A|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O1A|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O1A|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O1A|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O1A|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O1A|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O1B|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O1B|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O1B|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O1B|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O1C|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O1C|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O1C|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O1C|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O1C|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O1D|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O1D|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O1D|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O1D|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O1D|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O1D|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O1E|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O1E|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O1E|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O1E|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O1E|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O1E|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O1F|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O1F|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O1F|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O1F|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O1G|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O1G|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O1G|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O1G|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O1G|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
 pdb|1O1G|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
           Tomograms Of Insect Flight Muscle
          Length = 840

 Score = 32.0 bits (71), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 22/121 (18%)

Query: 43  FPNPSEVYTQNLNTLLSSLVSRSSQETF-------NTTTSGDEQTSITGLYQCRGDLTTP 95
           F   S ++ +NLN L+++L  RS+   F        T T G  +  +  L+Q R      
Sbjct: 643 FQTVSALFRENLNXLMANL--RSTHPHFVRCIIPNETXTPGAMEHELV-LHQLR------ 693

Query: 96  ECYTCVSKIPDLAYKLCSKAVAARVQLSGCYLKYEVIGFSQVPETELLYKICGSTQVTGA 155
            C   +  I     ++C K   +RV  +    +Y V+  S +PE + +     S ++ G 
Sbjct: 694 -CNGVLEGI-----RICRKGFPSRVLYADFKQRYRVLNASAIPEGQFMDSKKASEKLLGG 747

Query: 156 A 156
            
Sbjct: 748 G 748


>pdb|3BZ5|A Chain A, Functional Domain Of Inlj From Listeria Monocytogenes
           Includes A Cysteine Ladder
          Length = 457

 Score = 28.9 bits (63), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 8/81 (9%)

Query: 101 VSKIPDLAYKLCSKAVAARVQLS--------GCYLKYEVIGFSQVPETELLYKICGSTQV 152
           VS+ P L Y  C++     + +S         C+L  ++      P+T+L    C   ++
Sbjct: 123 VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKI 182

Query: 153 TGAAVFEQRRNTAFNMVTNGV 173
           T   V + +     N  TN +
Sbjct: 183 TELDVSQNKLLNRLNCDTNNI 203


>pdb|3LAY|A Chain A, Alpha-Helical Barrel Formed By The Decamer Of The Zinc
           Resistance- Associated Protein (Stm4172) From Salmonella
           Enterica Subsp. Enterica Serovar Typhimurium Str. Lt2
 pdb|3LAY|B Chain B, Alpha-Helical Barrel Formed By The Decamer Of The Zinc
           Resistance- Associated Protein (Stm4172) From Salmonella
           Enterica Subsp. Enterica Serovar Typhimurium Str. Lt2
 pdb|3LAY|C Chain C, Alpha-Helical Barrel Formed By The Decamer Of The Zinc
           Resistance- Associated Protein (Stm4172) From Salmonella
           Enterica Subsp. Enterica Serovar Typhimurium Str. Lt2
 pdb|3LAY|D Chain D, Alpha-Helical Barrel Formed By The Decamer Of The Zinc
           Resistance- Associated Protein (Stm4172) From Salmonella
           Enterica Subsp. Enterica Serovar Typhimurium Str. Lt2
 pdb|3LAY|E Chain E, Alpha-Helical Barrel Formed By The Decamer Of The Zinc
           Resistance- Associated Protein (Stm4172) From Salmonella
           Enterica Subsp. Enterica Serovar Typhimurium Str. Lt2
 pdb|3LAY|F Chain F, Alpha-Helical Barrel Formed By The Decamer Of The Zinc
           Resistance- Associated Protein (Stm4172) From Salmonella
           Enterica Subsp. Enterica Serovar Typhimurium Str. Lt2
 pdb|3LAY|G Chain G, Alpha-Helical Barrel Formed By The Decamer Of The Zinc
           Resistance- Associated Protein (Stm4172) From Salmonella
           Enterica Subsp. Enterica Serovar Typhimurium Str. Lt2
 pdb|3LAY|H Chain H, Alpha-Helical Barrel Formed By The Decamer Of The Zinc
           Resistance- Associated Protein (Stm4172) From Salmonella
           Enterica Subsp. Enterica Serovar Typhimurium Str. Lt2
 pdb|3LAY|I Chain I, Alpha-Helical Barrel Formed By The Decamer Of The Zinc
           Resistance- Associated Protein (Stm4172) From Salmonella
           Enterica Subsp. Enterica Serovar Typhimurium Str. Lt2
 pdb|3LAY|J Chain J, Alpha-Helical Barrel Formed By The Decamer Of The Zinc
           Resistance- Associated Protein (Stm4172) From Salmonella
           Enterica Subsp. Enterica Serovar Typhimurium Str. Lt2
          Length = 175

 Score = 28.1 bits (61), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 34/90 (37%), Gaps = 3/90 (3%)

Query: 84  GLYQCRGDLTTPECYTCVSKIPDLAYKLCSKAVAARVQLSGCYLKYEVIGFSQVPETELL 143
           G++Q  G   T E      KI D  Y   S   A R QL     +Y  +  +  P+T  +
Sbjct: 59  GMWQQGGSPLTTEQQATAQKIYDDYYTQTS---ALRQQLISKRYEYNALLTASSPDTAKI 115

Query: 144 YKICGSTQVTGAAVFEQRRNTAFNMVTNGV 173
             +    +  G  + EQR      M   G+
Sbjct: 116 NAVAKEMESLGQKLDEQRVKRDVAMAQAGI 145


>pdb|3IYG|Q Chain Q, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
           Cryo-Em Map
          Length = 512

 Score = 28.1 bits (61), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 15/54 (27%), Positives = 23/54 (42%)

Query: 4   HTKPSSLSLILFTTLVIFVHAKTDSDITNLVYRGCAEQKFPNPSEVYTQNLNTL 57
           H     LS +  T +V+F H K D  I+ +V RG  +    +        +NT 
Sbjct: 330 HCDSVYLSEVGDTQVVVFKHEKEDGAISTIVLRGSTDNLMDDIERAVDDGVNTF 383


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.131    0.392 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,727,305
Number of Sequences: 62578
Number of extensions: 291377
Number of successful extensions: 589
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 586
Number of HSP's gapped (non-prelim): 8
length of query: 267
length of database: 14,973,337
effective HSP length: 97
effective length of query: 170
effective length of database: 8,903,271
effective search space: 1513556070
effective search space used: 1513556070
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)