Query 024450
Match_columns 267
No_of_seqs 155 out of 1546
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 04:42:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024450.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024450hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01657 Stress-antifung: Salt 99.9 4.6E-26 9.9E-31 177.4 7.7 100 35-134 1-106 (106)
2 PF01657 Stress-antifung: Salt 99.9 1.7E-23 3.7E-28 162.8 7.0 97 144-240 1-106 (106)
3 PF07172 GRP: Glycine rich pro 71.1 3 6.5E-05 31.7 1.9 17 5-21 3-19 (95)
4 PF06366 FlhE: Flagellar prote 61.3 7.7 0.00017 30.1 2.5 21 246-266 18-38 (106)
5 PRK14747 cytochrome b6-f compl 34.6 20 0.00044 21.0 0.8 22 1-22 1-22 (29)
6 PF03742 PetN: PetN ; InterPr 31.4 25 0.00055 20.7 0.9 23 1-23 1-23 (29)
7 CHL00009 petN cytochrome b6/f 30.1 20 0.00043 21.1 0.2 22 1-22 1-22 (29)
8 PHA00008 J DNA packaging prote 17.5 78 0.0017 17.9 1.0 11 113-123 10-20 (26)
9 COG5314 Conjugal transfer/entr 17.3 2.7E+02 0.0058 24.8 4.8 51 4-63 5-55 (252)
10 PF06906 DUF1272: Protein of u 16.9 87 0.0019 21.5 1.4 22 96-117 28-49 (57)
No 1
>PF01657 Stress-antifung: Salt stress response/antifungal; InterPro: IPR002902 This domain is found in plants and has no known function. The structure of this domain is known and it is thought to be involved in antifungal responses in plants []. Two copies of this domain are also found together in cysteine-rich protein kinases and cysteine-rich repeat secretory proteins. The domain contains four conserved cysteines.; PDB: 3A2E_D.
Probab=99.93 E-value=4.6e-26 Score=177.36 Aligned_cols=100 Identities=33% Similarity=0.638 Sum_probs=77.1
Q ss_pred ccccC-C-Cccc-CCCChHHHHHHHHHHHhHhcCCc---CCcceeeccCCCCcEEEEEecCCCCChhchHHHHHHHHHHH
Q 024450 35 YRGCA-E-QKFP-NPSEVYTQNLNTLLSSLVSRSSQ---ETFNTTTSGDEQTSITGLYQCRGDLTTPECYTCVSKIPDLA 108 (267)
Q Consensus 35 ~~~C~-~-~~~~-~~~s~f~~nl~~ll~~L~~~a~~---~~f~~~~~g~~~~~vygl~~Cr~D~s~~~C~~Cl~~a~~~~ 108 (267)
|+.|+ + .+++ +++++|++||+.||+.|..+++. .+|+++..|.++++||||+||++|+++.+|..||+.|+.++
T Consensus 1 ~~~Cs~~~~~~~~~~~~~f~~~l~~ll~~l~~~a~~~~~~~f~~~~~~~~~~~vYgl~qC~~Dls~~dC~~Cl~~a~~~~ 80 (106)
T PF01657_consen 1 WHFCSSNTNNNYTTDNSTFEQNLNSLLSSLVSNAASSSSKGFATGSAGSGPDTVYGLAQCRGDLSPSDCRACLADAVANI 80 (106)
T ss_dssp ---E---SSB----TT-THHHHHHHHHHHHHHHGGGTT-TEEEEEE--ST---EEEEEEE-TTS-HHHHHHHHHHHHCCH
T ss_pred CCcCCCCCCCCcCCCCchHHHHHHHHHHHHHHHHhhccccCcEEeecCCCCCeEEEEEEcCCCCChhhhHHHHHHHHHHH
Confidence 67898 3 3455 57888999999999999998664 48999988999999999999999999999999999999999
Q ss_pred hhhCccCceEEEEcCcceeeeecccc
Q 024450 109 YKLCSKAVAARVQLSGCYLKYEVIGF 134 (267)
Q Consensus 109 ~~~C~~~~~a~i~~d~C~lRYs~~~f 134 (267)
...|+.+++++||++.|+||||+++|
T Consensus 81 ~~~C~~~~g~~v~~~~C~lRY~~~~F 106 (106)
T PF01657_consen 81 SSCCPGSRGGRVWYDSCFLRYENYPF 106 (106)
T ss_dssp HHHTTSBSSEEEEESSEEEEEESS--
T ss_pred HHhCCCCceEEEECCCEEEEEECCCC
Confidence 99999999999999999999999987
No 2
>PF01657 Stress-antifung: Salt stress response/antifungal; InterPro: IPR002902 This domain is found in plants and has no known function. The structure of this domain is known and it is thought to be involved in antifungal responses in plants []. Two copies of this domain are also found together in cysteine-rich protein kinases and cysteine-rich repeat secretory proteins. The domain contains four conserved cysteines.; PDB: 3A2E_D.
Probab=99.89 E-value=1.7e-23 Score=162.82 Aligned_cols=97 Identities=27% Similarity=0.624 Sum_probs=73.4
Q ss_pred eeecC---CCcc-cchHHHHHHHHHhhhhhhcccccc-Ccccccc----ccceEEEEEEecCCCCcCchHHHHHHHHHHH
Q 024450 144 YKICG---STQV-TGAAVFEQRRNTAFNMVTNGVKNS-VELFYTG----TYEHVYILGECEGDIASGNCGDCVKTATERA 214 (267)
Q Consensus 144 ~~~c~---~~n~-t~~~~F~~~~~~ll~~l~~~a~~~-~~~fa~~----~~~~vYglaQC~~DLs~~dC~~CL~~a~~~i 214 (267)
|+.|+ .+++ ++++.|+++++.+|..|...++.. +++|+++ ++++||||+||++||++.+|+.||+.++.++
T Consensus 1 ~~~Cs~~~~~~~~~~~~~f~~~l~~ll~~l~~~a~~~~~~~f~~~~~~~~~~~vYgl~qC~~Dls~~dC~~Cl~~a~~~~ 80 (106)
T PF01657_consen 1 WHFCSSNTNNNYTTDNSTFEQNLNSLLSSLVSNAASSSSKGFATGSAGSGPDTVYGLAQCRGDLSPSDCRACLADAVANI 80 (106)
T ss_dssp ---E---SSB----TT-THHHHHHHHHHHHHHHGGGTT-TEEEEEE--ST---EEEEEEE-TTS-HHHHHHHHHHHHCCH
T ss_pred CCcCCCCCCCCcCCCCchHHHHHHHHHHHHHHHHhhccccCcEEeecCCCCCeEEEEEEcCCCCChhhhHHHHHHHHHHH
Confidence 45677 3445 456679999999999998887633 3578876 4689999999999999999999999999999
Q ss_pred hhhCCCCccEEEEcCceEEEEcCCCC
Q 024450 215 KNECDDSISAQIYLNKCFISYSYYPN 240 (267)
Q Consensus 215 ~~~C~~~~gg~v~~~~C~lRYe~~~F 240 (267)
+++|++++||+|++++|+||||+|+|
T Consensus 81 ~~~C~~~~g~~v~~~~C~lRY~~~~F 106 (106)
T PF01657_consen 81 SSCCPGSRGGRVWYDSCFLRYENYPF 106 (106)
T ss_dssp HHHTTSBSSEEEEESSEEEEEESS--
T ss_pred HHhCCCCceEEEECCCEEEEEECCCC
Confidence 99999999999999999999999998
No 3
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=71.15 E-value=3 Score=31.72 Aligned_cols=17 Identities=24% Similarity=0.338 Sum_probs=9.0
Q ss_pred chhHHHHHHHHHHHHHh
Q 024450 5 TKPSSLSLILFTTLVIF 21 (267)
Q Consensus 5 ~~~~~~~~~~~~~~~~~ 21 (267)
+|+.+|+.++|+.+|++
T Consensus 3 SK~~llL~l~LA~lLli 19 (95)
T PF07172_consen 3 SKAFLLLGLLLAALLLI 19 (95)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 67755554555444443
No 4
>PF06366 FlhE: Flagellar protein FlhE; InterPro: IPR009420 This family consists of several Enterobacterial FlhE flagellar proteins. The exact function of this family is unknown [].; GO: 0019861 flagellum
Probab=61.25 E-value=7.7 Score=30.11 Aligned_cols=21 Identities=29% Similarity=0.526 Sum_probs=16.3
Q ss_pred CCCCCCCCCCCCceeeeEEec
Q 024450 246 NSSLSSGAQGSIHRRQWQWQL 266 (267)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~ 266 (267)
.+.+.+++.+.++++.|||+|
T Consensus 18 pp~~~p~~~~~it~V~WRy~l 38 (106)
T PF06366_consen 18 PPGPVPPASATITRVSWRYQL 38 (106)
T ss_pred CCCCCCCCCCEEEEEEEEEEE
Confidence 333455578999999999997
No 5
>PRK14747 cytochrome b6-f complex subunit PetN; Provisional
Probab=34.65 E-value=20 Score=21.02 Aligned_cols=22 Identities=36% Similarity=0.332 Sum_probs=15.8
Q ss_pred CCCCchhHHHHHHHHHHHHHhh
Q 024450 1 MDFHTKPSSLSLILFTTLVIFV 22 (267)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~ 22 (267)
|++.+..-+-..++|+++++++
T Consensus 1 mdivsl~Waalm~~FtfSlslV 22 (29)
T PRK14747 1 MDILTLGWVSVLVLFTWSIAMV 22 (29)
T ss_pred CceehhHHHHHHHHHhheeeEE
Confidence 6677776666777888777664
No 6
>PF03742 PetN: PetN ; InterPro: IPR005497 PetN is a small hydrophobic protein, crucial for cytochrome b6-f complex assembly and/or stability. It is found in bacteria and plants. Cytochrome b6-f complex is composed of 4 large subunits: cytochrome b6, subunit IV (17 kDa polypeptide, petD), cytochrome f and the Rieske protein, as well as 4 small subunits: petG, petL, petM and petN. The complex functions as a dimer. The cytochrome b6-f complex mediates electron transfer between photosystem II (PSII) and photosystem I (PSI) [].; GO: 0045158 electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity, 0017004 cytochrome complex assembly, 0009512 cytochrome b6f complex; PDB: 2ZT9_H 2D2C_H 2E76_H 1VF5_U 2E75_H 2E74_H.
Probab=31.44 E-value=25 Score=20.66 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=14.2
Q ss_pred CCCCchhHHHHHHHHHHHHHhhc
Q 024450 1 MDFHTKPSSLSLILFTTLVIFVH 23 (267)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~ 23 (267)
|++.+..-+-+.++|++++++++
T Consensus 1 mdiv~lgWaal~~~ftfSlalVV 23 (29)
T PF03742_consen 1 MDIVSLGWAALMVVFTFSLALVV 23 (29)
T ss_dssp -HHHCHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhhHHHHHHHHhccceeEE
Confidence 44555555666777787777653
No 7
>CHL00009 petN cytochrome b6/f complex subunit VIII
Probab=30.12 E-value=20 Score=21.12 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=16.2
Q ss_pred CCCCchhHHHHHHHHHHHHHhh
Q 024450 1 MDFHTKPSSLSLILFTTLVIFV 22 (267)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~ 22 (267)
|++.+..-+-+.++|+++|+++
T Consensus 1 mdiv~~gWaalmv~fTfSlslV 22 (29)
T CHL00009 1 MDIVSLAWAALMVVFTFSLSLV 22 (29)
T ss_pred CchhhhHHHHHHHHhheeeEEE
Confidence 6777777777778888777654
No 8
>PHA00008 J DNA packaging protein
Probab=17.50 E-value=78 Score=17.90 Aligned_cols=11 Identities=27% Similarity=0.253 Sum_probs=8.8
Q ss_pred ccCceEEEEcC
Q 024450 113 SKAVAARVQLS 123 (267)
Q Consensus 113 ~~~~~a~i~~d 123 (267)
..++||++||-
T Consensus 10 ~r~KGARLWYV 20 (26)
T PHA00008 10 SRRKGARLWYV 20 (26)
T ss_pred CccCceEEEEe
Confidence 35789999985
No 9
>COG5314 Conjugal transfer/entry exclusion protein [Intracellular trafficking and secretion]
Probab=17.27 E-value=2.7e+02 Score=24.85 Aligned_cols=51 Identities=24% Similarity=0.224 Sum_probs=29.0
Q ss_pred CchhHHHHHHHHHHHHHhhcccCCCccccccccccCCCcccCCCChHHHHHHHHHHHhHh
Q 024450 4 HTKPSSLSLILFTTLVIFVHAKTDSDITNLVYRGCAEQKFPNPSEVYTQNLNTLLSSLVS 63 (267)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~s~f~~nl~~ll~~L~~ 63 (267)
|.++++|.++..+.++.+|+.....+...+++ ..-|.|.+|+.....+|..
T Consensus 5 ~~~~r~ls~~~~liav~~~~~~~~qpa~a~~v---------fdpSN~~Qnilta~rsleq 55 (252)
T COG5314 5 PMRARALSMIAILIAVAFPSYAGVQPAQALIV---------FDPSNYAQNILTAVRSLEQ 55 (252)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhccCCccceee---------ecchHHHHHHHHHHHHHHH
Confidence 34555666654444555666544333323322 1445688998888888763
No 10
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=16.89 E-value=87 Score=21.46 Aligned_cols=22 Identities=18% Similarity=0.460 Sum_probs=15.1
Q ss_pred chHHHHHHHHHHHhhhCccCce
Q 024450 96 ECYTCVSKIPDLAYKLCSKAVA 117 (267)
Q Consensus 96 ~C~~Cl~~a~~~~~~~C~~~~~ 117 (267)
+|..|..-+...+...||+=-|
T Consensus 28 ECTFC~~C~e~~l~~~CPNCgG 49 (57)
T PF06906_consen 28 ECTFCADCAETMLNGVCPNCGG 49 (57)
T ss_pred eCcccHHHHHHHhcCcCcCCCC
Confidence 3666666666667788997544
Done!