Query 024450
Match_columns 267
No_of_seqs 155 out of 1546
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 08:25:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024450.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024450hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3a2e_A Ginkbilobin-2; domain 2 99.9 4.3E-28 1.5E-32 188.5 9.8 104 30-134 2-108 (108)
2 2e79_A Ginkbilobin-2; DUF26 fo 99.9 5.1E-28 1.7E-32 188.0 9.5 104 30-134 2-108 (108)
3 3a2e_A Ginkbilobin-2; domain 2 99.9 7.7E-26 2.6E-30 175.7 9.2 101 140-240 3-108 (108)
4 2e79_A Ginkbilobin-2; DUF26 fo 99.9 3.8E-25 1.3E-29 171.8 9.3 102 139-240 2-108 (108)
5 1vf5_H Protein PET N; photosyn 48.4 16 0.00054 20.7 2.6 23 1-23 1-23 (29)
6 1q90_N Cytochrome B6F complex 27.2 18 0.00063 20.7 0.6 23 1-23 3-25 (31)
7 1gff_3 Bacteriophage G4 capsid 13.4 78 0.0027 17.0 1.1 12 113-124 10-21 (26)
8 1zld_A PTR TOXA, PTR necrosis 9.7 95 0.0033 22.2 0.9 9 259-267 109-117 (118)
9 2xk0_A Polycomb protein PCL; t 8.5 1.1E+02 0.0037 20.9 0.8 12 122-133 41-52 (69)
10 3hkw_A NS5B RNA-dependent RNA 8.3 1.2E+03 0.041 22.2 8.1 77 52-132 250-330 (581)
No 1
>3a2e_A Ginkbilobin-2; domain 26 unknown function (DUF26), C-X8-C-X2-C motif, antifungal protein, embryo-abundant protein (EAP), plant protein; 2.38A {Ginkgo biloba}
Probab=99.95 E-value=4.3e-28 Score=188.48 Aligned_cols=104 Identities=24% Similarity=0.577 Sum_probs=92.5
Q ss_pred cccccccccCCCcccCCCChHHHHHHHHHHHhHhcCCcC--Ccceeecc-CCCCcEEEEEecCCCCChhchHHHHHHHHH
Q 024450 30 ITNLVYRGCAEQKFPNPSEVYTQNLNTLLSSLVSRSSQE--TFNTTTSG-DEQTSITGLYQCRGDLTTPECYTCVSKIPD 106 (267)
Q Consensus 30 ~~~~~~~~C~~~~~~~~~s~f~~nl~~ll~~L~~~a~~~--~f~~~~~g-~~~~~vygl~~Cr~D~s~~~C~~Cl~~a~~ 106 (267)
.++++++.|++ ++++++++|++||+.||++|+++++.. +|++...| .++++||||+|||+|+++++|+.||+.|+.
T Consensus 2 ~t~~v~~~Cn~-~~~t~~s~f~~nl~~ll~~L~~~a~~s~~~~~t~~~~~~~~~~vygl~qC~~Dls~~~C~~Cl~~a~~ 80 (108)
T 3a2e_A 2 NTAFVSSACNT-QKIPSGSPFNRNLRAMLADLRQNTAFSGYDYKTSRAGSGGAPTAYGRATCKQSISQSDCTACLSNLVN 80 (108)
T ss_dssp CCCEEEEEECS-SBCCTTCTHHHHHHHHHHHHHHHGGGTTSEEEEEECCSTTCCCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CcceeeeecCC-CccCCCChHHHHHHHHHHHHHhhCccccCCceEeeccCCCCceEEEEEEEcCCCCHHHHHHHHHHHHH
Confidence 35678899975 578899999999999999999887643 45666555 456999999999999999999999999999
Q ss_pred HHhhhCccCceEEEEcCcceeeeecccc
Q 024450 107 LAYKLCSKAVAARVQLSGCYLKYEVIGF 134 (267)
Q Consensus 107 ~~~~~C~~~~~a~i~~d~C~lRYs~~~f 134 (267)
++.+.||++++|+||++.|+||||+++|
T Consensus 81 ~~~~~C~~~~g~~i~~~~C~lRY~~~~F 108 (108)
T 3a2e_A 81 RIFSICNNAIGARVQLVDCFIQYEQRSF 108 (108)
T ss_dssp THHHHTTSBSSEEEEETTEEEEEESSCC
T ss_pred HHHHHCCCCceEEEECCCEEEEEeCCcC
Confidence 9999999999999999999999999987
No 2
>2e79_A Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lectin, plant protein, sugar binding protein; 2.38A {Ginkgo biloba} PDB: 3a2e_A
Probab=99.95 E-value=5.1e-28 Score=188.04 Aligned_cols=104 Identities=24% Similarity=0.566 Sum_probs=95.0
Q ss_pred cccccccccCCCcccCCCChHHHHHHHHHHHhHhcCCc--CCcceeeccCCC-CcEEEEEecCCCCChhchHHHHHHHHH
Q 024450 30 ITNLVYRGCAEQKFPNPSEVYTQNLNTLLSSLVSRSSQ--ETFNTTTSGDEQ-TSITGLYQCRGDLTTPECYTCVSKIPD 106 (267)
Q Consensus 30 ~~~~~~~~C~~~~~~~~~s~f~~nl~~ll~~L~~~a~~--~~f~~~~~g~~~-~~vygl~~Cr~D~s~~~C~~Cl~~a~~ 106 (267)
.++++++.|++ ++++++++|++||+.||+.|+.+++. .+|+++++|.+| ++||||+||++|+++++|+.||+.|+.
T Consensus 2 ~t~~~~~~C~~-~~~~~~s~f~~nl~~ll~~L~~~a~~~~~~f~~~~~g~~~~~~vYgl~qC~~Dls~~~C~~Cl~~a~~ 80 (108)
T 2e79_A 2 NTAFVSSACNT-QKIPSGSPFNRNLRAMLADLRQNTAFSGYDYKTSRAGSGGAPTAYGRATCKQSISQSDCTACLSNLVN 80 (108)
T ss_dssp CCCEEEEEECS-SBCCTTCTHHHHHHHHHHHHHHHGGGTTSEEEEEECCCTTCCCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CceeeeeeCCC-CeeCCcchHHHHHHHHHHHHHHHhhcCCcccEEEecCCCCCCcEEEEEecCCCCChHHHHHHHHHHHH
Confidence 35678899998 67889999999999999999988754 368888888766 899999999999999999999999999
Q ss_pred HHhhhCccCceEEEEcCcceeeeecccc
Q 024450 107 LAYKLCSKAVAARVQLSGCYLKYEVIGF 134 (267)
Q Consensus 107 ~~~~~C~~~~~a~i~~d~C~lRYs~~~f 134 (267)
++.+.||++++|+||++.|+||||+++|
T Consensus 81 ~~~~~C~~~~g~~i~~~~C~lRy~~~~F 108 (108)
T 2e79_A 81 RIFSICNNAIGARVQLVDCFIQYEQRSF 108 (108)
T ss_dssp THHHHTTSBSSEEEEESSEEEEEESSCC
T ss_pred HHHHhCCCCceEEEECCCeEEEEeCCCC
Confidence 9999999999999999999999999987
No 3
>3a2e_A Ginkbilobin-2; domain 26 unknown function (DUF26), C-X8-C-X2-C motif, antifungal protein, embryo-abundant protein (EAP), plant protein; 2.38A {Ginkgo biloba}
Probab=99.93 E-value=7.7e-26 Score=175.71 Aligned_cols=101 Identities=19% Similarity=0.395 Sum_probs=90.1
Q ss_pred cccceeecCCCcccchHHHHHHHHHhhhhhhccccccCcccccc-----ccceEEEEEEecCCCCcCchHHHHHHHHHHH
Q 024450 140 TELLYKICGSTQVTGAAVFEQRRNTAFNMVTNGVKNSVELFYTG-----TYEHVYILGECEGDIASGNCGDCVKTATERA 214 (267)
Q Consensus 140 ~~~~~~~c~~~n~t~~~~F~~~~~~ll~~l~~~a~~~~~~fa~~-----~~~~vYglaQC~~DLs~~dC~~CL~~a~~~i 214 (267)
+...++.|+..++++++.|+++++.||..|..+++.++.+|+++ +.++||||+||++||++.+|+.||+.++.++
T Consensus 3 t~~v~~~Cn~~~~t~~s~f~~nl~~ll~~L~~~a~~s~~~~~t~~~~~~~~~~vygl~qC~~Dls~~~C~~Cl~~a~~~~ 82 (108)
T 3a2e_A 3 TAFVSSACNTQKIPSGSPFNRNLRAMLADLRQNTAFSGYDYKTSRAGSGGAPTAYGRATCKQSISQSDCTACLSNLVNRI 82 (108)
T ss_dssp CCEEEEEECSSBCCTTCTHHHHHHHHHHHHHHHGGGTTSEEEEEECCSTTCCCEEEEEEECTTSCHHHHHHHHHHHHTTH
T ss_pred cceeeeecCCCccCCCChHHHHHHHHHHHHHhhCccccCCceEeeccCCCCceEEEEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 34567789999999889999999999999988877555566543 3579999999999999999999999999999
Q ss_pred hhhCCCCccEEEEcCceEEEEcCCCC
Q 024450 215 KNECDDSISAQIYLNKCFISYSYYPN 240 (267)
Q Consensus 215 ~~~C~~~~gg~v~~~~C~lRYe~~~F 240 (267)
+++|++++||+|++++|++|||+++|
T Consensus 83 ~~~C~~~~g~~i~~~~C~lRY~~~~F 108 (108)
T 3a2e_A 83 FSICNNAIGARVQLVDCFIQYEQRSF 108 (108)
T ss_dssp HHHTTSBSSEEEEETTEEEEEESSCC
T ss_pred HHHCCCCceEEEECCCEEEEEeCCcC
Confidence 99999999999999999999999998
No 4
>2e79_A Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lectin, plant protein, sugar binding protein; 2.38A {Ginkgo biloba} PDB: 3a2e_A
Probab=99.92 E-value=3.8e-25 Score=171.80 Aligned_cols=102 Identities=19% Similarity=0.397 Sum_probs=90.7
Q ss_pred ccccceeecCCCcccchHHHHHHHHHhhhhhhccccccCccccccc-----cceEEEEEEecCCCCcCchHHHHHHHHHH
Q 024450 139 ETELLYKICGSTQVTGAAVFEQRRNTAFNMVTNGVKNSVELFYTGT-----YEHVYILGECEGDIASGNCGDCVKTATER 213 (267)
Q Consensus 139 ~~~~~~~~c~~~n~t~~~~F~~~~~~ll~~l~~~a~~~~~~fa~~~-----~~~vYglaQC~~DLs~~dC~~CL~~a~~~ 213 (267)
++.+.++.|++.++++++.|+++++.+|..|...++.++.+|++++ .++||||+||+|||++.+|+.||+.++.+
T Consensus 2 ~t~~~~~~C~~~~~~~~s~f~~nl~~ll~~L~~~a~~~~~~f~~~~~g~~~~~~vYgl~qC~~Dls~~~C~~Cl~~a~~~ 81 (108)
T 2e79_A 2 NTAFVSSACNTQKIPSGSPFNRNLRAMLADLRQNTAFSGYDYKTSRAGSGGAPTAYGRATCKQSISQSDCTACLSNLVNR 81 (108)
T ss_dssp CCCEEEEEECSSBCCTTCTHHHHHHHHHHHHHHHGGGTTSEEEEEECCCTTCCCEEEEEEECTTSCHHHHHHHHHHHHTT
T ss_pred CceeeeeeCCCCeeCCcchHHHHHHHHHHHHHHHhhcCCcccEEEecCCCCCCcEEEEEecCCCCChHHHHHHHHHHHHH
Confidence 4567788999988988899999999999999887764444676541 36899999999999999999999999999
Q ss_pred HhhhCCCCccEEEEcCceEEEEcCCCC
Q 024450 214 AKNECDDSISAQIYLNKCFISYSYYPN 240 (267)
Q Consensus 214 i~~~C~~~~gg~v~~~~C~lRYe~~~F 240 (267)
++++|++++||+|++++|++|||+++|
T Consensus 82 ~~~~C~~~~g~~i~~~~C~lRy~~~~F 108 (108)
T 2e79_A 82 IFSICNNAIGARVQLVDCFIQYEQRSF 108 (108)
T ss_dssp HHHHTTSBSSEEEEESSEEEEEESSCC
T ss_pred HHHhCCCCceEEEECCCeEEEEeCCCC
Confidence 999999999999999999999999998
No 5
>1vf5_H Protein PET N; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.27.1 PDB: 2d2c_H* 2e74_H* 2e75_H* 2e76_H* 2zt9_H*
Probab=48.44 E-value=16 Score=20.68 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=15.9
Q ss_pred CCCCchhHHHHHHHHHHHHHhhc
Q 024450 1 MDFHTKPSSLSLILFTTLVIFVH 23 (267)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~ 23 (267)
|++.+..-+-+.++|++++++++
T Consensus 1 mdivsl~WaalmvvftfSlslVV 23 (29)
T 1vf5_H 1 MEIDVLGWVALLVVFTWSIAMVV 23 (29)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHhheeeeEEE
Confidence 67777777777788888887653
No 6
>1q90_N Cytochrome B6F complex subunit PETN; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.27.1
Probab=27.22 E-value=18 Score=20.71 Aligned_cols=23 Identities=9% Similarity=0.041 Sum_probs=13.6
Q ss_pred CCCCchhHHHHHHHHHHHHHhhc
Q 024450 1 MDFHTKPSSLSLILFTTLVIFVH 23 (267)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~ 23 (267)
|++.+..-+-+.++|++++++++
T Consensus 3 mdivsl~WaalmvvfTfSlslVV 25 (31)
T 1q90_N 3 PAIVQIGWAATCVMFSFSLSLVV 25 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeeeHHHHHHHHHhheeeEEEE
Confidence 34444455556677777776643
No 7
>1gff_3 Bacteriophage G4 capsid proteins GPF, GPG, GPJ; coat protein, icosahedral virus; 3.00A {Enterobacteria phage G4}
Probab=13.38 E-value=78 Score=16.95 Aligned_cols=12 Identities=33% Similarity=0.426 Sum_probs=9.1
Q ss_pred ccCceEEEEcCc
Q 024450 113 SKAVAARVQLSG 124 (267)
Q Consensus 113 ~~~~~a~i~~d~ 124 (267)
..+++|++||-+
T Consensus 10 ~r~kgarlwyvg 21 (26)
T 1gff_3 10 GKSKGARLWYVG 21 (26)
T ss_pred CCCCceEEEEec
Confidence 357899999853
No 8
>1zld_A PTR TOXA, PTR necrosis toxin; beta-sandwich, RGD-motif; 1.65A {Pyrenophora tritici-repentis} PDB: 1zle_A
Probab=9.73 E-value=95 Score=22.15 Aligned_cols=9 Identities=56% Similarity=1.140 Sum_probs=6.0
Q ss_pred eeeeEEecC
Q 024450 259 RRQWQWQLE 267 (267)
Q Consensus 259 ~~~~~~~~~ 267 (267)
++.||.|||
T Consensus 109 renwrmqle 117 (118)
T 1zld_A 109 RENWRMQLE 117 (118)
T ss_dssp CCCEEEEEC
T ss_pred hhhhhhccc
Confidence 456777776
No 9
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=8.48 E-value=1.1e+02 Score=20.87 Aligned_cols=12 Identities=0% Similarity=0.163 Sum_probs=9.6
Q ss_pred cCcceeeeeccc
Q 024450 122 LSGCYLKYEVIG 133 (267)
Q Consensus 122 ~d~C~lRYs~~~ 133 (267)
-..|++||++.+
T Consensus 41 ~~~ClV~FeD~S 52 (69)
T 2xk0_A 41 SDQYLIRFDDQS 52 (69)
T ss_dssp SSCEEEEETTCC
T ss_pred CceEEEEecCCc
Confidence 457999999864
No 10
>3hkw_A NS5B RNA-dependent RNA polymerase; HCV polymerase, 1,5-benzodiazepine, transferase; HET: IX6; 1.55A {Hepatitis c virus subtype 1A} SCOP: e.8.1.4 PDB: 3qgi_A* 3qgh_A* 2xi3_A* 2xi2_A* 3e51_A* 3bsa_A* 3bsc_A* 3br9_A* 3co9_A* 3cvk_A* 3cwj_A* 3d28_A* 3d5m_A* 3cde_A* 3gyn_A* 3h2l_A* 3igv_A* 2ax0_A* 2awz_A* 2ax1_A* ...
Probab=8.30 E-value=1.2e+03 Score=22.24 Aligned_cols=77 Identities=18% Similarity=0.163 Sum_probs=42.0
Q ss_pred HHHHHHHHHhHhcCCcCCcceeeccCCCCcEEEEEecC--CCCC--hhchHHHHHHHHHHHhhhCccCceEEEEcCccee
Q 024450 52 QNLNTLLSSLVSRSSQETFNTTTSGDEQTSITGLYQCR--GDLT--TPECYTCVSKIPDLAYKLCSKAVAARVQLSGCYL 127 (267)
Q Consensus 52 ~nl~~ll~~L~~~a~~~~f~~~~~g~~~~~vygl~~Cr--~D~s--~~~C~~Cl~~a~~~~~~~C~~~~~a~i~~d~C~l 127 (267)
..++.++..|..+. |..+......+..+|.=-|| ||++ -..|-.|.-.|.......=...-.--+..|.|.+
T Consensus 250 PEaRKLI~sLtERL----YvGGPm~nskG~~~gYRgCRaSGdltTSlGNtLtCyikA~AacraaGl~~~~mLvcGDD~VV 325 (581)
T 3hkw_A 250 PQARVAIKSLTERL----YVGGPLTNSKGENCGYRRCRASGVLTTSCGNTLTCYIKARAACRAAGLQDCTMLVCGDDLVV 325 (581)
T ss_dssp HHHHHHHHHHHHHT----TTCEEEECTTSCEEEEECSCCTTSTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEETTEEEE
T ss_pred HHHHHHHHHHHhcc----ccCCceEeCCCCeecccCCcCCCCCCcCcccHHHHHHHHHHHHHhcCCCCceEEEeCCCEEE
Confidence 55677787777663 22223333445577777887 5554 3345555544333222110012234457889999
Q ss_pred eeecc
Q 024450 128 KYEVI 132 (267)
Q Consensus 128 RYs~~ 132 (267)
-.|..
T Consensus 326 I~Es~ 330 (581)
T 3hkw_A 326 ICESA 330 (581)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 88765
Done!