Query 024450
Match_columns 267
No_of_seqs 155 out of 1546
Neff 7.3
Searched_HMMs 13730
Date Mon Mar 25 08:26:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024450.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024450hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xrda1 f.3.1.1 (A:1-52) Light 7.2 1.4E+02 0.01 17.6 2.4 14 9-22 18-31 (52)
2 d1q42a_ d.17.4.2 (A:) mRNA tra 6.6 1.8E+02 0.013 21.5 3.3 43 221-263 93-139 (174)
3 d1g25a_ g.44.1.1 (A:) TFIIH Ma 5.2 1.1E+02 0.0079 18.3 1.1 20 95-114 29-48 (65)
4 d2cupa3 g.39.1.3 (A:8-34) Four 4.8 1.2E+02 0.009 15.1 0.9 8 119-126 20-27 (27)
5 d1l8na2 d.92.2.2 (A:4-142) alp 4.6 86 0.0062 21.9 0.3 11 122-132 2-12 (139)
6 d1ha9a_ g.3.2.1 (A:) Trypsin i 4.6 90 0.0066 16.4 0.3 7 85-91 12-18 (34)
7 d1weoa_ g.44.1.1 (A:) Cellulos 3.9 74 0.0054 21.0 -0.6 27 201-237 44-70 (93)
8 d1cl4a_ g.40.1.1 (A:) Nucleoca 3.8 40 0.0029 18.1 -1.7 22 109-130 2-23 (32)
9 d1rmda2 g.44.1.1 (A:1-86) V(D) 3.5 2E+02 0.015 18.3 1.4 20 95-114 44-63 (86)
10 d1of5b_ d.17.4.2 (B:) mRNA tra 3.4 2.2E+02 0.016 20.8 1.7 43 220-262 76-128 (165)
No 1
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=7.23 E-value=1.4e+02 Score=17.55 Aligned_cols=14 Identities=21% Similarity=0.479 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHhh
Q 024450 9 SLSLILFTTLVIFV 22 (267)
Q Consensus 9 ~~~~~~~~~~~~~~ 22 (267)
+.+|+++.++++|.
T Consensus 18 ~~fL~~LAl~IHfi 31 (52)
T d1xrda1 18 ATFLFVLALLIHFI 31 (52)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45556666666653
No 2
>d1q42a_ d.17.4.2 (A:) mRNA transport regulator MTR2 {Yeast (Candida albicans) [TaxId: 5476]}
Probab=6.64 E-value=1.8e+02 Score=21.45 Aligned_cols=43 Identities=9% Similarity=0.018 Sum_probs=20.4
Q ss_pred CccEEEEcCceEEEEcCC---CCCCCCCCCCC-CCCCCCCCceeeeE
Q 024450 221 SISAQIYLNKCFISYSYY---PNGVPNPNSSL-SSGAQGSIHRRQWQ 263 (267)
Q Consensus 221 ~~gg~v~~~~C~lRYe~~---~F~~~~~~~~~-~~~~~~~~~~~~~~ 263 (267)
..|..|...+|-+||+-. +.+....-+.. .+.....++|.+|-
T Consensus 93 Gtgt~i~nv~~KVRFDEsGrdk~Gq~a~l~~~~~~~~~~~~~Rp~Wg 139 (174)
T d1q42a_ 93 GTGTFVVHFSAKVRFDQSGRNRLGESADLFQENNSIVSKTNQRPIWG 139 (174)
T ss_dssp TTTEEEEEEEEEEEEBCSSCCTTSCCC---------------CCCBC
T ss_pred CCceEEEEeeeEEEecCcCCCcCCCcceeecCCCCCCCCCCCCcccc
Confidence 367899999999999632 23444322222 22233455688873
No 3
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.20 E-value=1.1e+02 Score=18.26 Aligned_cols=20 Identities=20% Similarity=0.370 Sum_probs=16.1
Q ss_pred hchHHHHHHHHHHHhhhCcc
Q 024450 95 PECYTCVSKIPDLAYKLCSK 114 (267)
Q Consensus 95 ~~C~~Cl~~a~~~~~~~C~~ 114 (267)
.-|..|+......-...||.
T Consensus 29 ~fc~~Ci~~~~~~~~~~CP~ 48 (65)
T d1g25a_ 29 TLCESCVDLLFVRGAGNCPE 48 (65)
T ss_dssp CEEHHHHHHHHHTTSSSCTT
T ss_pred HhhHHHHHHHhCcCcCCCCC
Confidence 47899999988766667985
No 4
>d2cupa3 g.39.1.3 (A:8-34) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.80 E-value=1.2e+02 Score=15.13 Aligned_cols=8 Identities=25% Similarity=0.675 Sum_probs=4.8
Q ss_pred EEEcCcce
Q 024450 119 RVQLSGCY 126 (267)
Q Consensus 119 ~i~~d~C~ 126 (267)
+.|-|.||
T Consensus 20 r~wh~~cf 27 (27)
T d2cupa3 20 RFWHDTCF 27 (27)
T ss_dssp EEEETTTC
T ss_pred cccccccC
Confidence 45666664
No 5
>d1l8na2 d.92.2.2 (A:4-142) alpha-D-glucuronidase, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=4.64 E-value=86 Score=21.93 Aligned_cols=11 Identities=36% Similarity=0.854 Sum_probs=9.1
Q ss_pred cCcceeeeecc
Q 024450 122 LSGCYLKYEVI 132 (267)
Q Consensus 122 ~d~C~lRYs~~ 132 (267)
||.|.|||.-.
T Consensus 2 y~~~WLrY~~~ 12 (139)
T d1l8na2 2 YEPCWLRYERK 12 (139)
T ss_dssp CCCTTCCCCCC
T ss_pred CcchhcCCCcc
Confidence 67899999864
No 6
>d1ha9a_ g.3.2.1 (A:) Trypsin inhibitor {Spiny bitter cucumber (Momordica cochinchinensis), MCOTI-II [TaxId: 3674]}
Probab=4.59 E-value=90 Score=16.41 Aligned_cols=7 Identities=57% Similarity=1.108 Sum_probs=5.4
Q ss_pred EEecCCC
Q 024450 85 LYQCRGD 91 (267)
Q Consensus 85 l~~Cr~D 91 (267)
|-+||.|
T Consensus 12 lkkcrrd 18 (34)
T d1ha9a_ 12 LKKCRRD 18 (34)
T ss_dssp CCBCSSG
T ss_pred HHHhccc
Confidence 5688888
No 7
>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=3.92 E-value=74 Score=21.02 Aligned_cols=27 Identities=19% Similarity=0.571 Sum_probs=22.9
Q ss_pred CchHHHHHHHHHHHhhhCCCCccEEEEcCceEEEEcC
Q 024450 201 GNCGDCVKTATERAKNECDDSISAQIYLNKCFISYSY 237 (267)
Q Consensus 201 ~dC~~CL~~a~~~i~~~C~~~~gg~v~~~~C~lRYe~ 237 (267)
.-|+.|...-..+-.+.|+ .|..||.-
T Consensus 44 PvCrpCyEYErkeG~q~Cp----------qCkt~Ykr 70 (93)
T d1weoa_ 44 PACRPCYEYERREGTQNCP----------QCKTRYKR 70 (93)
T ss_dssp CCCHHHHHHHHHTSCSSCT----------TTCCCCCC
T ss_pred ccchHHHHHHHhccCccCc----------ccCChhhh
Confidence 5799999999988889997 58888864
No 8
>d1cl4a_ g.40.1.1 (A:) Nucleocapsid protein from mason-pfizer monkey virus (MPMV) {Mason-pfizer monkey virus [TaxId: 11855]}
Probab=3.82 E-value=40 Score=18.05 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=17.4
Q ss_pred hhhCccCceEEEEcCcceeeee
Q 024450 109 YKLCSKAVAARVQLSGCYLKYE 130 (267)
Q Consensus 109 ~~~C~~~~~a~i~~d~C~lRYs 130 (267)
+..||.=+.++=|-..|.-++.
T Consensus 2 P~lCPrC~kG~HWa~~Crsk~~ 23 (32)
T d1cl4a_ 2 PGLCPRCKRGKHWANECKSKTD 23 (32)
T ss_dssp CCSCSSCSSCSSCSTTCCCTTS
T ss_pred CccCccccCcchHHHHhhhhhc
Confidence 4579988888999988876654
No 9
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.47 E-value=2e+02 Score=18.28 Aligned_cols=20 Identities=15% Similarity=0.408 Sum_probs=15.4
Q ss_pred hchHHHHHHHHHHHhhhCcc
Q 024450 95 PECYTCVSKIPDLAYKLCSK 114 (267)
Q Consensus 95 ~~C~~Cl~~a~~~~~~~C~~ 114 (267)
.-|+.|+....+.-...||.
T Consensus 44 ~FC~~Ci~~~~~~~~~~CP~ 63 (86)
T d1rmda2 44 LFCRICILRCLKVMGSYCPS 63 (86)
T ss_dssp EEEHHHHHHHHHHTCSBCTT
T ss_pred hhhHHHHHHHHhhCCCcCcc
Confidence 57999999987655556885
No 10
>d1of5b_ d.17.4.2 (B:) mRNA transport regulator MTR2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.41 E-value=2.2e+02 Score=20.81 Aligned_cols=43 Identities=14% Similarity=0.162 Sum_probs=0.0
Q ss_pred CCccEEEEcCceEEEE----------cCCCCCCCCCCCCCCCCCCCCCceeee
Q 024450 220 DSISAQIYLNKCFISY----------SYYPNGVPNPNSSLSSGAQGSIHRRQW 262 (267)
Q Consensus 220 ~~~gg~v~~~~C~lRY----------e~~~F~~~~~~~~~~~~~~~~~~~~~~ 262 (267)
...|..+...+|.+|| +..-+-.|....+..++..-.++|++|
T Consensus 76 pG~gT~vi~~sgkVrfDesgr~k~G~~~~~~~~~~~~~~~~~~~~~~~~rp~w 128 (165)
T d1of5b_ 76 PGSGTLICNVNCKVRFDESGRDKMGQDATVPIQPNNTGNRNRPNDMNKPRPLW 128 (165)
T ss_dssp TTTTEEEEEEEEEEECC-----------------------------------C
T ss_pred CCCcEEEEEEeeEEEECCCCCCCCCCccccccCCcccCCCCcccccccCCccc
Done!