BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024451
(267 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 449 bits (1156), Expect = e-127, Method: Compositional matrix adjust.
Identities = 207/269 (76%), Positives = 241/269 (89%), Gaps = 2/269 (0%)
Query: 1 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 60
M CAF+P GQSVACGGLDS CSIFNL+S D+DGN+PVSR+L+GHKGY S CQYVPD++T
Sbjct: 112 MECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQET 171
Query: 61 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 120
LIT SGDQTCVLWD+TTG R S+FG EF SGHTADVLS+SI+ N+ MF+SGSCD+T R
Sbjct: 172 RLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVR 231
Query: 121 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQ- 179
LWD R+ SRAVRT+HGHEGD+N+VKFFPDG RFGTGSDDGTCRLFD+RTGHQLQVY ++
Sbjct: 232 LWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREP 291
Query: 180 -HGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLG 238
+NE+P VTS+AFSISGRLLFAGYSNGDCYVWDTLLA++VLNLG+LQNSHEGRI+CLG
Sbjct: 292 DRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLG 351
Query: 239 LSADGSALCTGSWDTNLKIWAFGGYRRVL 267
LS+DGSALCTGSWD NLKIWAF G+R+++
Sbjct: 352 LSSDGSALCTGSWDKNLKIWAFSGHRKIV 380
Score = 31.2 bits (69), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 60/141 (42%), Gaps = 13/141 (9%)
Query: 132 RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSI 191
RT GH G V ++ + P+ N + S DG +++ T + + P V
Sbjct: 60 RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAI-----KLHCPWVMEC 114
Query: 192 AFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNS-----HEGRI-TCLGLSADGSA 245
AF+ +G+ + G + C +++ L+ G++ S H+G +C + +
Sbjct: 115 AFAPNGQSVACGGLDSACSIFN--LSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETR 172
Query: 246 LCTGSWDTNLKIWAFGGYRRV 266
L TGS D +W +R+
Sbjct: 173 LITGSGDQTCVLWDVTTGQRI 193
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 246 bits (628), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 129/258 (50%), Positives = 182/258 (70%), Gaps = 19/258 (7%)
Query: 1 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 60
MTCA++P+G VACGGLD++CSI+NL + ++GN+ VSR L+GH GY+SCC+++ +D
Sbjct: 112 MTCAYAPSGNYVACGGLDNICSIYNLKT---REGNVRVSRELAGHTGYLSCCRFL--DDN 166
Query: 61 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 120
++TSSGD TC LWDI TG +T+ +GHT DV+S+S++ ++R+FVSG+CD++A+
Sbjct: 167 QIVTSSGDTTCALWDIETGQQTTT-----FTGHTGDVMSLSLA-PDTRLFVSGACDASAK 220
Query: 121 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH 180
LWD R +TF GHE D+N + FFP+GN F TGSDD TCRLFD+R +L Y
Sbjct: 221 LWDVR-EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH-- 277
Query: 181 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS 240
+N I +TS++FS SGRLL AGY + +C VWD L A + + H+ R++CLG++
Sbjct: 278 -DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA----DRAGVLAGHDNRVSCLGVT 332
Query: 241 ADGSALCTGSWDTNLKIW 258
DG A+ TGSWD+ LKIW
Sbjct: 333 DDGMAVATGSWDSFLKIW 350
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 73/169 (43%), Gaps = 12/169 (7%)
Query: 92 GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN 151
GH A + ++ G++SR+ VS S D +WD+ ++ V V T + P GN
Sbjct: 64 GHLAKIYAMHW-GTDSRLLVSASQDGKLIIWDSYTTNK-VHAIPLRSSWVMTCAYAPSGN 121
Query: 152 RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGD--C 209
G D C +++++T + V + +++ F +++ S+GD C
Sbjct: 122 YVACGGLDNICSIYNLKT-REGNVRVSRELAGHTGYLSCCRFLDDNQIV---TSSGDTTC 177
Query: 210 YVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 258
+WD + + H G + L L+ D +G+ D + K+W
Sbjct: 178 ALWDIETGQQT----TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 222
Score = 31.2 bits (69), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 27/134 (20%), Positives = 54/134 (40%), Gaps = 6/134 (4%)
Query: 125 RVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENE 184
R+ R RT GH + + + D + S DG ++D T +++ +
Sbjct: 53 RIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRS---- 108
Query: 185 IPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS 244
V + A++ SG + G + C +++ + + + H G ++C D +
Sbjct: 109 -SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDN 166
Query: 245 ALCTGSWDTNLKIW 258
+ T S DT +W
Sbjct: 167 QIVTSSGDTTCALW 180
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 246 bits (627), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 129/258 (50%), Positives = 182/258 (70%), Gaps = 19/258 (7%)
Query: 1 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 60
MTCA++P+G VACGGLD++CSI+NL + ++GN+ VSR L+GH GY+SCC+++ +D
Sbjct: 101 MTCAYAPSGNYVACGGLDNICSIYNLKT---REGNVRVSRELAGHTGYLSCCRFL--DDN 155
Query: 61 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 120
++TSSGD TC LWDI TG +T+ +GHT DV+S+S++ ++R+FVSG+CD++A+
Sbjct: 156 QIVTSSGDTTCALWDIETGQQTTT-----FTGHTGDVMSLSLA-PDTRLFVSGACDASAK 209
Query: 121 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH 180
LWD R +TF GHE D+N + FFP+GN F TGSDD TCRLFD+R +L Y
Sbjct: 210 LWDVR-EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH-- 266
Query: 181 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS 240
+N I +TS++FS SGRLL AGY + +C VWD L A + + H+ R++CLG++
Sbjct: 267 -DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA----DRAGVLAGHDNRVSCLGVT 321
Query: 241 ADGSALCTGSWDTNLKIW 258
DG A+ TGSWD+ LKIW
Sbjct: 322 DDGMAVATGSWDSFLKIW 339
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 73/169 (43%), Gaps = 12/169 (7%)
Query: 92 GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN 151
GH A + ++ G++SR+ VS S D +WD+ ++ V V T + P GN
Sbjct: 53 GHLAKIYAMHW-GTDSRLLVSASQDGKLIIWDSYTTNK-VHAIPLRSSWVMTCAYAPSGN 110
Query: 152 RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGD--C 209
G D C +++++T + V + +++ F +++ S+GD C
Sbjct: 111 YVACGGLDNICSIYNLKT-REGNVRVSRELAGHTGYLSCCRFLDDNQIV---TSSGDTTC 166
Query: 210 YVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 258
+WD + + H G + L L+ D +G+ D + K+W
Sbjct: 167 ALWDIETGQQT----TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 211
Score = 31.2 bits (69), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 27/134 (20%), Positives = 54/134 (40%), Gaps = 6/134 (4%)
Query: 125 RVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENE 184
R+ R RT GH + + + D + S DG ++D T +++ +
Sbjct: 42 RIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRS---- 97
Query: 185 IPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS 244
V + A++ SG + G + C +++ + + + H G ++C D +
Sbjct: 98 -SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDN 155
Query: 245 ALCTGSWDTNLKIW 258
+ T S DT +W
Sbjct: 156 QIVTSSGDTTCALW 169
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 246 bits (627), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 129/258 (50%), Positives = 182/258 (70%), Gaps = 19/258 (7%)
Query: 1 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 60
MTCA++P+G VACGGLD++CSI+NL + ++GN+ VSR L+GH GY+SCC+++ +D
Sbjct: 101 MTCAYAPSGNYVACGGLDNICSIYNLKT---REGNVRVSRELAGHTGYLSCCRFL--DDN 155
Query: 61 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 120
++TSSGD TC LWDI TG +T+ +GHT DV+S+S++ ++R+FVSG+CD++A+
Sbjct: 156 QIVTSSGDTTCALWDIETGQQTTT-----FTGHTGDVMSLSLA-PDTRLFVSGACDASAK 209
Query: 121 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH 180
LWD R +TF GHE D+N + FFP+GN F TGSDD TCRLFD+R +L Y
Sbjct: 210 LWDVR-EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH-- 266
Query: 181 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS 240
+N I +TS++FS SGRLL AGY + +C VWD L A + + H+ R++CLG++
Sbjct: 267 -DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA----DRAGVLAGHDNRVSCLGVT 321
Query: 241 ADGSALCTGSWDTNLKIW 258
DG A+ TGSWD+ LKIW
Sbjct: 322 DDGMAVATGSWDSFLKIW 339
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 73/169 (43%), Gaps = 12/169 (7%)
Query: 92 GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN 151
GH A + ++ G++SR+ +S S D +WD+ ++ V V T + P GN
Sbjct: 53 GHLAKIYAMHW-GTDSRLLLSASQDGKLIIWDSYTTNK-VHAIPLRSSWVMTCAYAPSGN 110
Query: 152 RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGD--C 209
G D C +++++T + V + +++ F +++ S+GD C
Sbjct: 111 YVACGGLDNICSIYNLKT-REGNVRVSRELAGHTGYLSCCRFLDDNQIV---TSSGDTTC 166
Query: 210 YVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 258
+WD + + H G + L L+ D +G+ D + K+W
Sbjct: 167 ALWDIETGQQT----TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 211
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 27/134 (20%), Positives = 54/134 (40%), Gaps = 6/134 (4%)
Query: 125 RVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENE 184
R+ R RT GH + + + D + S DG ++D T +++ +
Sbjct: 42 RIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRS---- 97
Query: 185 IPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS 244
V + A++ SG + G + C +++ + + + H G ++C D +
Sbjct: 98 -SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDN 155
Query: 245 ALCTGSWDTNLKIW 258
+ T S DT +W
Sbjct: 156 QIVTSSGDTTCALW 169
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 246 bits (627), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 129/258 (50%), Positives = 182/258 (70%), Gaps = 19/258 (7%)
Query: 1 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 60
MTCA++P+G VACGGLD++CSI+NL + ++GN+ VSR L+GH GY+SCC+++ +D
Sbjct: 101 MTCAYAPSGNYVACGGLDNICSIYNLKT---REGNVRVSRELAGHTGYLSCCRFL--DDN 155
Query: 61 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 120
++TSSGD TC LWDI TG +T+ +GHT DV+S+S++ ++R+FVSG+CD++A+
Sbjct: 156 QIVTSSGDTTCALWDIETGQQTTT-----FTGHTGDVMSLSLA-PDTRLFVSGACDASAK 209
Query: 121 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH 180
LWD R +TF GHE D+N + FFP+GN F TGSDD TCRLFD+R +L Y
Sbjct: 210 LWDVR-EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH-- 266
Query: 181 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS 240
+N I +TS++FS SGRLL AGY + +C VWD L A + + H+ R++CLG++
Sbjct: 267 -DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA----DRAGVLAGHDNRVSCLGVT 321
Query: 241 ADGSALCTGSWDTNLKIW 258
DG A+ TGSWD+ LKIW
Sbjct: 322 DDGMAVATGSWDSFLKIW 339
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 73/169 (43%), Gaps = 12/169 (7%)
Query: 92 GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN 151
GH A + ++ G++SR+ +S S D +WD+ ++ V V T + P GN
Sbjct: 53 GHLAKIYAMHW-GTDSRLLLSASQDGKLIIWDSYTTNK-VHAIPLRSSWVMTCAYAPSGN 110
Query: 152 RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGD--C 209
G D C +++++T + V + +++ F +++ S+GD C
Sbjct: 111 YVACGGLDNICSIYNLKT-REGNVRVSRELAGHTGYLSCCRFLDDNQIV---TSSGDTTC 166
Query: 210 YVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 258
+WD + + H G + L L+ D +G+ D + K+W
Sbjct: 167 ALWDIETGQQT----TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 211
Score = 31.2 bits (69), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 27/134 (20%), Positives = 54/134 (40%), Gaps = 6/134 (4%)
Query: 125 RVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENE 184
R+ R RT GH + + + D + S DG ++D T +++ +
Sbjct: 42 RIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRS---- 97
Query: 185 IPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS 244
V + A++ SG + G + C +++ + + + H G ++C D +
Sbjct: 98 -SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDN 155
Query: 245 ALCTGSWDTNLKIW 258
+ T S DT +W
Sbjct: 156 QIVTSSGDTTCALW 169
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 246 bits (627), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 129/258 (50%), Positives = 182/258 (70%), Gaps = 19/258 (7%)
Query: 1 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 60
MTCA++P+G VACGGLD++CSI+NL + ++GN+ VSR L+GH GY+SCC+++ +D
Sbjct: 101 MTCAYAPSGNYVACGGLDNICSIYNLKT---REGNVRVSRELAGHTGYLSCCRFL--DDN 155
Query: 61 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 120
++TSSGD TC LWDI TG +T+ +GHT DV+S+S++ ++R+FVSG+CD++A+
Sbjct: 156 QIVTSSGDTTCALWDIETGQQTTT-----FTGHTGDVMSLSLA-PDTRLFVSGACDASAK 209
Query: 121 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH 180
LWD R +TF GHE D+N + FFP+GN F TGSDD TCRLFD+R +L Y
Sbjct: 210 LWDVR-EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH-- 266
Query: 181 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS 240
+N I +TS++FS SGRLL AGY + +C VWD L A + + H+ R++CLG++
Sbjct: 267 -DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA----DRAGVLAGHDNRVSCLGVT 321
Query: 241 ADGSALCTGSWDTNLKIW 258
DG A+ TGSWD+ LKIW
Sbjct: 322 DDGMAVATGSWDSFLKIW 339
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 73/169 (43%), Gaps = 12/169 (7%)
Query: 92 GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN 151
GH A + ++ G++SR+ VS S D +WD+ ++ V V T + P GN
Sbjct: 53 GHLAKIYAMHW-GTDSRLLVSASQDGKLIIWDSYTTNK-VHAIPLRSSWVMTCAYAPSGN 110
Query: 152 RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGD--C 209
G D C +++++T + V + +++ F +++ S+GD C
Sbjct: 111 YVACGGLDNICSIYNLKT-REGNVRVSRELAGHTGYLSCCRFLDDNQIV---TSSGDTTC 166
Query: 210 YVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 258
+WD + + H G + L L+ D +G+ D + K+W
Sbjct: 167 ALWDIETGQQT----TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 211
Score = 31.2 bits (69), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 27/134 (20%), Positives = 54/134 (40%), Gaps = 6/134 (4%)
Query: 125 RVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENE 184
R+ R RT GH + + + D + S DG ++D T +++ +
Sbjct: 42 RIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRS---- 97
Query: 185 IPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS 244
V + A++ SG + G + C +++ + + + H G ++C D +
Sbjct: 98 -SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDN 155
Query: 245 ALCTGSWDTNLKIW 258
+ T S DT +W
Sbjct: 156 QIVTSSGDTTCALW 169
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 204 bits (520), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 108/261 (41%), Positives = 163/261 (62%), Gaps = 18/261 (6%)
Query: 1 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRM-LSGHKGYVSCCQYVPDED 59
M CA++P+G ++ACGGLD+ CS++ L DK+ N+ + ++ H Y+S C + + D
Sbjct: 110 MACAYAPSGCAIACGGLDNKCSVYPLT--FDKNENMAAKKKSVAMHTNYLSACSFT-NSD 166
Query: 60 THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS-RMFVSGSCDST 118
++T+SGD TC LWD+ +G F GH ADVL + ++ S + FVSG CD
Sbjct: 167 MQILTASGDGTCALWDVESGQLLQSF-----HGHGADVLCLDLAPSETGNTFVSGGCDKK 221
Query: 119 ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQ 178
A +WD R + + V+ F HE DVN+V+++P G+ F +GSDD TCRL+D+R ++ +Y +
Sbjct: 222 AMVWDMR-SGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSK 280
Query: 179 QHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLG 238
E+ I +S+ FS+SGRLLFAGY++ VWD L V S+ HE R++ L
Sbjct: 281 ---ESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRV----SILFGHENRVSTLR 333
Query: 239 LSADGSALCTGSWDTNLKIWA 259
+S DG+A C+GSWD L++WA
Sbjct: 334 VSPDGTAFCSGSWDHTLRVWA 354
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 84.7 bits (208), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 112/235 (47%), Gaps = 22/235 (9%)
Query: 29 PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE 88
PT N + L+GH VS ++ P+ + L +SS D+ +W + G+
Sbjct: 12 PTPVKPNYALKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIW--------GAYDGK 62
Query: 89 FQ---SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVK 145
F+ SGH + V+ S S+S + VS S D T ++WD + + ++T GH V
Sbjct: 63 FEKTISGHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCN 120
Query: 146 FFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS 205
F P N +GS D + R++D++TG L+ H + V+++ F+ G L+ +
Sbjct: 121 FNPQSNLIVSGSFDESVRIWDVKTGKCLKT-LPAHSD----PVSAVHFNRDGSLIVSSSY 175
Query: 206 NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF 260
+G C +WDT + L +L + ++ + S +G + + D LK+W +
Sbjct: 176 DGLCRIWDTASGQC---LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 227
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 83/187 (44%), Gaps = 15/187 (8%)
Query: 40 RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG--LRTSVFGGEFQSGHTADV 97
+ L GH YV CC + P + +++ S D++ +WD+ TG L+T H+ V
Sbjct: 107 KTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVRIWDVKTGKCLKT-------LPAHSDPV 158
Query: 98 LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS 157
+V + S + VS S D R+WDT V+ VKF P+G +
Sbjct: 159 SAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 217
Query: 158 DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS-GRLLFAGYSNGDCYVWDTLL 216
D T +L+D G L+ Y E + FS++ G+ + +G + Y+W+
Sbjct: 218 LDNTLKLWDYSKGKCLKTYTGHKNEK---YCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 274
Query: 217 AKVVLNL 223
++V L
Sbjct: 275 KEIVQKL 281
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 84.7 bits (208), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 73/262 (27%), Positives = 115/262 (43%), Gaps = 33/262 (12%)
Query: 3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHL 62
AFSP GQ++A D ++N N G L + L+GH V + PD T +
Sbjct: 145 VAFSPDGQTIASASDDKTVKLWNRN------GQLL--QTLTGHSSSVWGVAFSPDGQT-I 195
Query: 63 ITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLW 122
++S D+T LW+ L ++ +GH++ V V+ S + + S S D T +LW
Sbjct: 196 ASASDDKTVKLWNRNGQLLQTL------TGHSSSVRGVAFS-PDGQTIASASDDKTVKLW 248
Query: 123 DTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE 182
+ + ++T GH VN V F PDG + SDD T +L++ R G LQ
Sbjct: 249 NRN--GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSS 305
Query: 183 NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ--NSHEGRITCLGLS 240
V +AFS G+ + + + +W+ N LQ H + + S
Sbjct: 306 -----VWGVAFSPDGQTIASASDDKTVKLWNR-------NGQHLQTLTGHSSSVWGVAFS 353
Query: 241 ADGSALCTGSWDTNLKIWAFGG 262
DG + + S D +K+W G
Sbjct: 354 PDGQTIASASDDKTVKLWNRNG 375
Score = 84.0 bits (206), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 70/259 (27%), Positives = 113/259 (43%), Gaps = 35/259 (13%)
Query: 3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHL 62
AFSP GQ++A D ++N N G L + L+GH V + PD T +
Sbjct: 350 VAFSPDGQTIASASDDKTVKLWNRN------GQLL--QTLTGHSSSVRGVAFSPDGQT-I 400
Query: 63 ITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLW 122
++S D+T LW+ L ++ +GH++ V V+ S + + S S D T +LW
Sbjct: 401 ASASDDKTVKLWNRNGQLLQTL------TGHSSSVWGVAFS-PDDQTIASASDDKTVKLW 453
Query: 123 DTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE 182
+ + ++T GH V V F PDG + SDD T +L++ R G LQ
Sbjct: 454 NRN--GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSS 510
Query: 183 NEIPHVTSIAFSISGRLLFAGYSNGDCYVWD---TLLAKVVLNLGSLQNSHEGRITCLGL 239
V +AFS G+ + + + +W+ LL + H + +
Sbjct: 511 -----VRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT--------GHSSSVWGVAF 557
Query: 240 SADGSALCTGSWDTNLKIW 258
S DG + + S D +K+W
Sbjct: 558 SPDGQTIASASSDKTVKLW 576
Score = 81.3 bits (199), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 71/263 (26%), Positives = 114/263 (43%), Gaps = 35/263 (13%)
Query: 3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHL 62
AFSP GQ++A D ++N N G L + L+GH V + PD T +
Sbjct: 22 VAFSPDGQTIASASDDKTVKLWNRN------GQLL--QTLTGHSSSVWGVAFSPDGQT-I 72
Query: 63 ITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLW 122
++S D+T LW+ L ++ +GH++ V V+ S + + S S D T +LW
Sbjct: 73 ASASDDKTVKLWNRNGQLLQTL------TGHSSSVRGVAFS-PDGQTIASASDDKTVKLW 125
Query: 123 DTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE 182
+ + ++T GH V V F PDG + SDD T +L++ R G LQ
Sbjct: 126 NRN--GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSS 182
Query: 183 NEIPHVTSIAFSISGRLLFAGYSNGDCYVWD---TLLAKVVLNLGSLQNSHEGRITCLGL 239
V +AFS G+ + + + +W+ LL + H + +
Sbjct: 183 -----VWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT--------GHSSSVRGVAF 229
Query: 240 SADGSALCTGSWDTNLKIWAFGG 262
S DG + + S D +K+W G
Sbjct: 230 SPDGQTIASASDDKTVKLWNRNG 252
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 98/211 (46%), Gaps = 24/211 (11%)
Query: 3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHL 62
AFSP GQ++A D ++N N G L + L+GH V + PD+ T +
Sbjct: 391 VAFSPDGQTIASASDDKTVKLWNRN------GQLL--QTLTGHSSSVWGVAFSPDDQT-I 441
Query: 63 ITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLW 122
++S D+T LW+ L ++ +GH++ V V+ S + + S S D T +LW
Sbjct: 442 ASASDDKTVKLWNRNGQLLQTL------TGHSSSVRGVAFS-PDGQTIASASDDKTVKLW 494
Query: 123 DTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE 182
+ + ++T GH V V F PDG + SDD T +L++ R G LQ
Sbjct: 495 NRN--GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSS 551
Query: 183 NEIPHVTSIAFSISGRLLFAGYSNGDCYVWD 213
V +AFS G+ + + S+ +W+
Sbjct: 552 -----VWGVAFSPDGQTIASASSDKTVKLWN 577
Score = 77.4 bits (189), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 111/263 (42%), Gaps = 35/263 (13%)
Query: 3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHL 62
AFSP GQ++A D ++N N + L+GH V + PD T +
Sbjct: 309 VAFSPDGQTIASASDDKTVKLWNRNGQH--------LQTLTGHSSSVWGVAFSPDGQT-I 359
Query: 63 ITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLW 122
++S D+T LW+ L ++ +GH++ V V+ S + + S S D T +LW
Sbjct: 360 ASASDDKTVKLWNRNGQLLQTL------TGHSSSVRGVAFS-PDGQTIASASDDKTVKLW 412
Query: 123 DTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE 182
+ + ++T GH V V F PD + SDD T +L++ R G LQ
Sbjct: 413 NRN--GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN-RNGQLLQTLTGHSSS 469
Query: 183 NEIPHVTSIAFSISGRLLFAGYSNGDCYVWD---TLLAKVVLNLGSLQNSHEGRITCLGL 239
V +AFS G+ + + + +W+ LL + H + +
Sbjct: 470 -----VRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT--------GHSSSVRGVAF 516
Query: 240 SADGSALCTGSWDTNLKIWAFGG 262
S DG + + S D +K+W G
Sbjct: 517 SPDGQTIASASDDKTVKLWNRNG 539
Score = 77.4 bits (189), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 111/265 (41%), Gaps = 39/265 (14%)
Query: 3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHL 62
AF P GQ++A D ++N N G L + L+GH V + PD T +
Sbjct: 268 VAFRPDGQTIASASDDKTVKLWNRN------GQLL--QTLTGHSSSVWGVAFSPDGQT-I 318
Query: 63 ITSSGDQTCVLWDITTGLRTSVFGGEFQS--GHTADVLSVSISGSNSRMFVSGSCDSTAR 120
++S D+T LW+ G Q+ GH++ V V+ S + + S S D T +
Sbjct: 319 ASASDDKTVKLWNRN--------GQHLQTLTGHSSSVWGVAFS-PDGQTIASASDDKTVK 369
Query: 121 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH 180
LW+ + ++T GH V V F PDG + SDD T +L++ R G LQ
Sbjct: 370 LWNRN--GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHS 426
Query: 181 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD---TLLAKVVLNLGSLQNSHEGRITCL 237
V +AFS + + + + +W+ LL + H + +
Sbjct: 427 SS-----VWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLT--------GHSSSVRGV 473
Query: 238 GLSADGSALCTGSWDTNLKIWAFGG 262
S DG + + S D +K+W G
Sbjct: 474 AFSPDGQTIASASDDKTVKLWNRNG 498
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 95/224 (42%), Gaps = 27/224 (12%)
Query: 42 LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS 101
L H V + PD T + ++S D+T LW+ L ++ +GH++ V V+
Sbjct: 12 LEAHSSSVRGVAFSPDGQT-IASASDDKTVKLWNRNGQLLQTL------TGHSSSVWGVA 64
Query: 102 ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT 161
S + + S S D T +LW+ + ++T GH V V F PDG + SDD T
Sbjct: 65 FS-PDGQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT 121
Query: 162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD---TLLAK 218
+L++ R G LQ V +AFS G+ + + + +W+ LL
Sbjct: 122 VKLWN-RNGQLLQTLTGHSSS-----VWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT 175
Query: 219 VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 262
+ H + + S DG + + S D +K+W G
Sbjct: 176 LT--------GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG 211
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 84.7 bits (208), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 112/235 (47%), Gaps = 22/235 (9%)
Query: 29 PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE 88
PT N + L+GH VS ++ P+ + L +SS D+ +W + G+
Sbjct: 12 PTPVKPNYALKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIW--------GAYDGK 62
Query: 89 FQ---SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVK 145
F+ SGH + V+ S S+S + VS S D T ++WD + + ++T GH V
Sbjct: 63 FEKTISGHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCN 120
Query: 146 FFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS 205
F P N +GS D + R++D++TG L+ H + V+++ F+ G L+ +
Sbjct: 121 FNPQSNLIVSGSFDESVRIWDVKTGKCLKT-LPAHSD----PVSAVHFNRDGSLIVSSSY 175
Query: 206 NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF 260
+G C +WDT + L +L + ++ + S +G + + D LK+W +
Sbjct: 176 DGLCRIWDTASGQC---LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 227
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 83/187 (44%), Gaps = 15/187 (8%)
Query: 40 RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG--LRTSVFGGEFQSGHTADV 97
+ L GH YV CC + P + +++ S D++ +WD+ TG L+T H+ V
Sbjct: 107 KTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVRIWDVKTGKCLKT-------LPAHSDPV 158
Query: 98 LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS 157
+V + S + VS S D R+WDT V+ VKF P+G +
Sbjct: 159 SAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 217
Query: 158 DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS-GRLLFAGYSNGDCYVWDTLL 216
D T +L+D G L+ Y E + FS++ G+ + +G + Y+W+
Sbjct: 218 LDNTLKLWDYSKGKCLKTYTGHKNEK---YCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 274
Query: 217 AKVVLNL 223
++V L
Sbjct: 275 KEIVQKL 281
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 84.7 bits (208), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 112/235 (47%), Gaps = 22/235 (9%)
Query: 29 PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE 88
PT N + L+GH VS ++ P+ + L +SS D+ +W + G+
Sbjct: 23 PTPVKPNYALKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIW--------GAYDGK 73
Query: 89 FQ---SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVK 145
F+ SGH + V+ S S+S + VS S D T ++WD + + ++T GH V
Sbjct: 74 FEKTISGHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCN 131
Query: 146 FFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS 205
F P N +GS D + R++D++TG L+ H + V+++ F+ G L+ +
Sbjct: 132 FNPQSNLIVSGSFDESVRIWDVKTGKCLKT-LPAHSD----PVSAVHFNRDGSLIVSSSY 186
Query: 206 NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF 260
+G C +WDT + L +L + ++ + S +G + + D LK+W +
Sbjct: 187 DGLCRIWDTASGQC---LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 238
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 83/187 (44%), Gaps = 15/187 (8%)
Query: 40 RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG--LRTSVFGGEFQSGHTADV 97
+ L GH YV CC + P + +++ S D++ +WD+ TG L+T H+ V
Sbjct: 118 KTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVRIWDVKTGKCLKT-------LPAHSDPV 169
Query: 98 LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS 157
+V + S + VS S D R+WDT V+ VKF P+G +
Sbjct: 170 SAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 228
Query: 158 DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS-GRLLFAGYSNGDCYVWDTLL 216
D T +L+D G L+ Y E + FS++ G+ + +G + Y+W+
Sbjct: 229 LDNTLKLWDYSKGKCLKTYTGHKNEK---YCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 285
Query: 217 AKVVLNL 223
++V L
Sbjct: 286 KEIVQKL 292
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 84.7 bits (208), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 112/235 (47%), Gaps = 22/235 (9%)
Query: 29 PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE 88
PT N + L+GH VS ++ P+ + L +SS D+ +W + G+
Sbjct: 11 PTPVKPNYALKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIW--------GAYDGK 61
Query: 89 FQ---SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVK 145
F+ SGH + V+ S S+S + VS S D T ++WD + + ++T GH V
Sbjct: 62 FEKTISGHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCN 119
Query: 146 FFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS 205
F P N +GS D + R++D++TG L+ H + V+++ F+ G L+ +
Sbjct: 120 FNPQSNLIVSGSFDESVRIWDVKTGKCLKT-LPAHSD----PVSAVHFNRDGSLIVSSSY 174
Query: 206 NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF 260
+G C +WDT + L +L + ++ + S +G + + D LK+W +
Sbjct: 175 DGLCRIWDTASGQC---LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 226
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 83/187 (44%), Gaps = 15/187 (8%)
Query: 40 RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG--LRTSVFGGEFQSGHTADV 97
+ L GH YV CC + P + +++ S D++ +WD+ TG L+T H+ V
Sbjct: 106 KTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVRIWDVKTGKCLKT-------LPAHSDPV 157
Query: 98 LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS 157
+V + S + VS S D R+WDT V+ VKF P+G +
Sbjct: 158 SAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 216
Query: 158 DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS-GRLLFAGYSNGDCYVWDTLL 216
D T +L+D G L+ Y E + FS++ G+ + +G + Y+W+
Sbjct: 217 LDNTLKLWDYSKGKCLKTYTGHKNEK---YCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 273
Query: 217 AKVVLNL 223
++V L
Sbjct: 274 KEIVQKL 280
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 84.7 bits (208), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 112/235 (47%), Gaps = 22/235 (9%)
Query: 29 PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE 88
PT N + L+GH VS ++ P+ + L +SS D+ +W + G+
Sbjct: 30 PTPVKPNYALKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIW--------GAYDGK 80
Query: 89 FQ---SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVK 145
F+ SGH + V+ S S+S + VS S D T ++WD + + ++T GH V
Sbjct: 81 FEKTISGHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCN 138
Query: 146 FFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS 205
F P N +GS D + R++D++TG L+ H + V+++ F+ G L+ +
Sbjct: 139 FNPQSNLIVSGSFDESVRIWDVKTGKCLKT-LPAHSD----PVSAVHFNRDGSLIVSSSY 193
Query: 206 NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF 260
+G C +WDT + L +L + ++ + S +G + + D LK+W +
Sbjct: 194 DGLCRIWDTASGQC---LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 245
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 83/187 (44%), Gaps = 15/187 (8%)
Query: 40 RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG--LRTSVFGGEFQSGHTADV 97
+ L GH YV CC + P + +++ S D++ +WD+ TG L+T H+ V
Sbjct: 125 KTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVRIWDVKTGKCLKT-------LPAHSDPV 176
Query: 98 LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS 157
+V + S + VS S D R+WDT V+ VKF P+G +
Sbjct: 177 SAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 235
Query: 158 DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS-GRLLFAGYSNGDCYVWDTLL 216
D T +L+D G L+ Y E + FS++ G+ + +G + Y+W+
Sbjct: 236 LDNTLKLWDYSKGKCLKTYTGHKNEK---YCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 292
Query: 217 AKVVLNL 223
++V L
Sbjct: 293 KEIVQKL 299
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 84.7 bits (208), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 112/235 (47%), Gaps = 22/235 (9%)
Query: 29 PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE 88
PT N + L+GH VS ++ P+ + L +SS D+ +W + G+
Sbjct: 28 PTPVKPNYALKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIW--------GAYDGK 78
Query: 89 FQ---SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVK 145
F+ SGH + V+ S S+S + VS S D T ++WD + + ++T GH V
Sbjct: 79 FEKTISGHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCN 136
Query: 146 FFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS 205
F P N +GS D + R++D++TG L+ H + V+++ F+ G L+ +
Sbjct: 137 FNPQSNLIVSGSFDESVRIWDVKTGKCLKT-LPAHSD----PVSAVHFNRDGSLIVSSSY 191
Query: 206 NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF 260
+G C +WDT + L +L + ++ + S +G + + D LK+W +
Sbjct: 192 DGLCRIWDTASGQC---LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 243
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 83/187 (44%), Gaps = 15/187 (8%)
Query: 40 RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG--LRTSVFGGEFQSGHTADV 97
+ L GH YV CC + P + +++ S D++ +WD+ TG L+T H+ V
Sbjct: 123 KTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVRIWDVKTGKCLKT-------LPAHSDPV 174
Query: 98 LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS 157
+V + S + VS S D R+WDT V+ VKF P+G +
Sbjct: 175 SAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 233
Query: 158 DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS-GRLLFAGYSNGDCYVWDTLL 216
D T +L+D G L+ Y E + FS++ G+ + +G + Y+W+
Sbjct: 234 LDNTLKLWDYSKGKCLKTYTGHKNEK---YCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 290
Query: 217 AKVVLNL 223
++V L
Sbjct: 291 KEIVQKL 297
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 84.7 bits (208), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 112/235 (47%), Gaps = 22/235 (9%)
Query: 29 PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE 88
PT N + L+GH VS ++ P+ + L +SS D+ +W + G+
Sbjct: 2 PTPVKPNYALKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIW--------GAYDGK 52
Query: 89 FQ---SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVK 145
F+ SGH + V+ S S+S + VS S D T ++WD + + ++T GH V
Sbjct: 53 FEKTISGHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCN 110
Query: 146 FFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS 205
F P N +GS D + R++D++TG L+ H + V+++ F+ G L+ +
Sbjct: 111 FNPQSNLIVSGSFDESVRIWDVKTGKCLKT-LPAHSD----PVSAVHFNRDGSLIVSSSY 165
Query: 206 NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF 260
+G C +WDT + L +L + ++ + S +G + + D LK+W +
Sbjct: 166 DGLCRIWDTASGQC---LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 217
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 83/187 (44%), Gaps = 15/187 (8%)
Query: 40 RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG--LRTSVFGGEFQSGHTADV 97
+ L GH YV CC + P + +++ S D++ +WD+ TG L+T H+ V
Sbjct: 97 KTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVRIWDVKTGKCLKT-------LPAHSDPV 148
Query: 98 LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS 157
+V + S + VS S D R+WDT V+ VKF P+G +
Sbjct: 149 SAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 207
Query: 158 DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS-GRLLFAGYSNGDCYVWDTLL 216
D T +L+D G L+ Y E + FS++ G+ + +G + Y+W+
Sbjct: 208 LDNTLKLWDYSKGKCLKTYTGHKNEK---YCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 264
Query: 217 AKVVLNL 223
++V L
Sbjct: 265 KEIVQKL 271
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 84.3 bits (207), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 112/235 (47%), Gaps = 22/235 (9%)
Query: 29 PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE 88
PT N + L+GH VS ++ P+ + L +SS D+ +W + G+
Sbjct: 7 PTPVKPNYALKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIW--------GAYDGK 57
Query: 89 FQ---SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVK 145
F+ SGH + V+ S S+S + VS S D T ++WD + + ++T GH V
Sbjct: 58 FEKTISGHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCN 115
Query: 146 FFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS 205
F P N +GS D + R++D++TG L+ H + V+++ F+ G L+ +
Sbjct: 116 FNPQSNLIVSGSFDESVRIWDVKTGKCLKT-LPAHSD----PVSAVHFNRDGSLIVSSSY 170
Query: 206 NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF 260
+G C +WDT + L +L + ++ + S +G + + D LK+W +
Sbjct: 171 DGLCRIWDTASGQC---LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 222
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 83/187 (44%), Gaps = 15/187 (8%)
Query: 40 RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG--LRTSVFGGEFQSGHTADV 97
+ L GH YV CC + P + +++ S D++ +WD+ TG L+T H+ V
Sbjct: 102 KTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVRIWDVKTGKCLKT-------LPAHSDPV 153
Query: 98 LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS 157
+V + S + VS S D R+WDT V+ VKF P+G +
Sbjct: 154 SAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 212
Query: 158 DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS-GRLLFAGYSNGDCYVWDTLL 216
D T +L+D G L+ Y E + FS++ G+ + +G + Y+W+
Sbjct: 213 LDNTLKLWDYSKGKCLKTYTGHKNEK---YCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 269
Query: 217 AKVVLNL 223
++V L
Sbjct: 270 KEIVQKL 276
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 84.3 bits (207), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 112/235 (47%), Gaps = 22/235 (9%)
Query: 29 PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE 88
PT N + L+GH VS ++ P+ + L +SS D+ +W + G+
Sbjct: 12 PTPVKPNYALKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIW--------GAYDGK 62
Query: 89 FQ---SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVK 145
F+ SGH + V+ S S+S + VS S D T ++WD + + ++T GH V
Sbjct: 63 FEKTISGHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCN 120
Query: 146 FFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS 205
F P N +GS D + R++D++TG L+ H + V+++ F+ G L+ +
Sbjct: 121 FNPQSNLIVSGSFDESVRIWDVKTGKCLKT-LPAHSD----PVSAVHFNRDGSLIVSSSY 175
Query: 206 NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF 260
+G C +WDT + L +L + ++ + S +G + + D LK+W +
Sbjct: 176 DGLCRIWDTASGQC---LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 227
Score = 67.4 bits (163), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 83/187 (44%), Gaps = 15/187 (8%)
Query: 40 RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG--LRTSVFGGEFQSGHTADV 97
+ L GH YV CC + P + +++ S D++ +WD+ TG L+T H+ V
Sbjct: 107 KTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVRIWDVKTGKCLKT-------LPAHSDPV 158
Query: 98 LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS 157
+V + S + VS S D R+WDT V+ VKF P+G +
Sbjct: 159 SAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 217
Query: 158 DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS-GRLLFAGYSNGDCYVWDTLL 216
D T +L+D G L+ Y E + FS++ G+ + +G + Y+W+
Sbjct: 218 LDNTLKLWDYSKGKCLKTYTGHKNEK---YCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 274
Query: 217 AKVVLNL 223
++V L
Sbjct: 275 KEIVQKL 281
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 84.3 bits (207), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 112/235 (47%), Gaps = 22/235 (9%)
Query: 29 PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE 88
PT N + L+GH VS ++ P+ + L +SS D+ +W + G+
Sbjct: 6 PTPVKPNYALKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIW--------GAYDGK 56
Query: 89 FQ---SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVK 145
F+ SGH + V+ S S+S + VS S D T ++WD + + ++T GH V
Sbjct: 57 FEKTISGHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCN 114
Query: 146 FFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS 205
F P N +GS D + R++D++TG L+ H + V+++ F+ G L+ +
Sbjct: 115 FNPQSNLIVSGSFDESVRIWDVKTGKCLKT-LPAHSD----PVSAVHFNRDGSLIVSSSY 169
Query: 206 NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF 260
+G C +WDT + L +L + ++ + S +G + + D LK+W +
Sbjct: 170 DGLCRIWDTASGQC---LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 221
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 83/187 (44%), Gaps = 15/187 (8%)
Query: 40 RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG--LRTSVFGGEFQSGHTADV 97
+ L GH YV CC + P + +++ S D++ +WD+ TG L+T H+ V
Sbjct: 101 KTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVRIWDVKTGKCLKT-------LPAHSDPV 152
Query: 98 LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS 157
+V + S + VS S D R+WDT V+ VKF P+G +
Sbjct: 153 SAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 211
Query: 158 DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS-GRLLFAGYSNGDCYVWDTLL 216
D T +L+D G L+ Y E + FS++ G+ + +G + Y+W+
Sbjct: 212 LDNTLKLWDYSKGKCLKTYTGHKNEK---YCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 268
Query: 217 AKVVLNL 223
++V L
Sbjct: 269 KEIVQKL 275
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 84.3 bits (207), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 112/235 (47%), Gaps = 22/235 (9%)
Query: 29 PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE 88
PT N + L+GH VS ++ P+ + L +SS D+ +W + G+
Sbjct: 6 PTPVKPNYALKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIW--------GAYDGK 56
Query: 89 FQ---SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVK 145
F+ SGH + V+ S S+S + VS S D T ++WD + + ++T GH V
Sbjct: 57 FEKTISGHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCN 114
Query: 146 FFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS 205
F P N +GS D + R++D++TG L+ H + V+++ F+ G L+ +
Sbjct: 115 FNPQSNLIVSGSFDESVRIWDVKTGKCLKT-LPAHSD----PVSAVHFNRDGSLIVSSSY 169
Query: 206 NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF 260
+G C +WDT + L +L + ++ + S +G + + D LK+W +
Sbjct: 170 DGLCRIWDTASGQC---LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 221
Score = 67.4 bits (163), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 83/187 (44%), Gaps = 15/187 (8%)
Query: 40 RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG--LRTSVFGGEFQSGHTADV 97
+ L GH YV CC + P + +++ S D++ +WD+ TG L+T H+ V
Sbjct: 101 KTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVRIWDVKTGKCLKT-------LPAHSDPV 152
Query: 98 LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS 157
+V + S + VS S D R+WDT V+ VKF P+G +
Sbjct: 153 SAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 211
Query: 158 DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS-GRLLFAGYSNGDCYVWDTLL 216
D T +L+D G L+ Y E + FS++ G+ + +G + Y+W+
Sbjct: 212 LDNTLKLWDYSKGKCLKTYTGHKNEK---YCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 268
Query: 217 AKVVLNL 223
++V L
Sbjct: 269 KEIVQKL 275
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 84.0 bits (206), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 113/235 (48%), Gaps = 22/235 (9%)
Query: 29 PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE 88
PT N + L+GH VS ++ P+ + L +SS D+ +W + G+
Sbjct: 9 PTPVKPNYALMFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIW--------GAYDGK 59
Query: 89 FQ---SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVK 145
F+ SGH + V+ S S+S + VS S D T ++WD + + ++T GH V
Sbjct: 60 FEKTISGHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCN 117
Query: 146 FFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS 205
F P N +GS D + R++D++TG L+ H + V+++ F+ G L+ +
Sbjct: 118 FNPQSNLIVSGSFDESVRIWDVKTGMCLKT-LPAHSD----PVSAVHFNRDGSLIVSSSY 172
Query: 206 NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF 260
+G C +WDT + L +L + ++ + S +G + + D +LK+W +
Sbjct: 173 DGLCRIWDTASGQC---LKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDY 224
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 80/185 (43%), Gaps = 11/185 (5%)
Query: 40 RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLS 99
+ L GH YV CC + P + +++ S D++ +WD+ TG+ H+ V +
Sbjct: 104 KTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVRIWDVKTGMCLKTL-----PAHSDPVSA 157
Query: 100 VSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD 159
V + S + VS S D R+WDT V+ VKF P+G + D
Sbjct: 158 VHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 216
Query: 160 GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS-GRLLFAGYSNGDCYVWDTLLAK 218
+L+D G L+ Y E + FS++ G+ + +G + Y+W+ +
Sbjct: 217 NDLKLWDYSKGKCLKTYTGHKNEK---YCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKE 273
Query: 219 VVLNL 223
+V L
Sbjct: 274 IVQKL 278
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 112/235 (47%), Gaps = 22/235 (9%)
Query: 29 PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE 88
PT N + L+GH VS ++ P+ + L +SS D+ +W + G+
Sbjct: 9 PTPVKPNYALMFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIW--------GAYDGK 59
Query: 89 FQ---SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVK 145
F+ SGH + V+ S S+S + VS S D T ++WD + + ++T GH V
Sbjct: 60 FEKTISGHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCN 117
Query: 146 FFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS 205
F P N +GS D + R++D++TG L+ H + V+++ F+ G L+ +
Sbjct: 118 FNPQSNLIVSGSFDESVRIWDVKTGMCLKT-LPAHSD----PVSAVHFNRDGSLIVSSSY 172
Query: 206 NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF 260
+G C +WDT + L +L + ++ + S +G + + D LK+W +
Sbjct: 173 DGLCRIWDTASGQC---LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 224
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 81/185 (43%), Gaps = 11/185 (5%)
Query: 40 RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLS 99
+ L GH YV CC + P + +++ S D++ +WD+ TG+ H+ V +
Sbjct: 104 KTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVRIWDVKTGMCLKTL-----PAHSDPVSA 157
Query: 100 VSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD 159
V + S + VS S D R+WDT V+ VKF P+G + D
Sbjct: 158 VHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 216
Query: 160 GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS-GRLLFAGYSNGDCYVWDTLLAK 218
T +L+D G L+ Y E + FS++ G+ + +G + Y+W+ +
Sbjct: 217 NTLKLWDYSKGKCLKTYTGHKNEK---YCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKE 273
Query: 219 VVLNL 223
+V L
Sbjct: 274 IVQKL 278
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 81.6 bits (200), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 110/229 (48%), Gaps = 22/229 (9%)
Query: 35 NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ---S 91
N + L+GH VS ++ P+ + L +SS D+ +W + G+F+ S
Sbjct: 11 NYALKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIW--------GAYDGKFEKTIS 61
Query: 92 GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN 151
GH + V+ S S+S + VS S D T ++WD + + ++T GH V F P N
Sbjct: 62 GHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSN 119
Query: 152 RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYV 211
+GS D + R++D++TG L+ H + V+++ F+ G L+ + +G C +
Sbjct: 120 LIVSGSFDESVRIWDVKTGKCLKT-LPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRI 174
Query: 212 WDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF 260
WDT + L +L + ++ + S +G + + D LK+W +
Sbjct: 175 WDTASGQC---LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 220
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 83/187 (44%), Gaps = 15/187 (8%)
Query: 40 RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG--LRTSVFGGEFQSGHTADV 97
+ L GH YV CC + P + +++ S D++ +WD+ TG L+T H+ V
Sbjct: 100 KTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVRIWDVKTGKCLKT-------LPAHSDPV 151
Query: 98 LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS 157
+V + S + VS S D R+WDT V+ VKF P+G +
Sbjct: 152 SAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 210
Query: 158 DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS-GRLLFAGYSNGDCYVWDTLL 216
D T +L+D G L+ Y E + FS++ G+ + +G + Y+W+
Sbjct: 211 LDNTLKLWDYSKGKCLKTYTGHKNEK---YCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 267
Query: 217 AKVVLNL 223
++V L
Sbjct: 268 KEIVQKL 274
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 81.6 bits (200), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 110/229 (48%), Gaps = 22/229 (9%)
Query: 35 NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ---S 91
N + L+GH VS ++ P+ + L +SS D+ +W + G+F+ S
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIW--------GAYDGKFEKTIS 65
Query: 92 GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN 151
GH + V+ S S+S + VS S D T ++WD + + ++T GH V F P N
Sbjct: 66 GHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 152 RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYV 211
+GS D + R++D++TG L+ H + V+++ F+ G L+ + +G C +
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKT-LPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRI 178
Query: 212 WDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF 260
WDT + L +L + ++ + S +G + + D LK+W +
Sbjct: 179 WDTASGQC---LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 224
Score = 67.4 bits (163), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 83/187 (44%), Gaps = 15/187 (8%)
Query: 40 RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG--LRTSVFGGEFQSGHTADV 97
+ L GH YV CC + P + +++ S D++ +WD+ TG L+T H+ V
Sbjct: 104 KTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVRIWDVKTGKCLKT-------LPAHSDPV 155
Query: 98 LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS 157
+V + S + VS S D R+WDT V+ VKF P+G +
Sbjct: 156 SAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 214
Query: 158 DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS-GRLLFAGYSNGDCYVWDTLL 216
D T +L+D G L+ Y E + FS++ G+ + +G + Y+W+
Sbjct: 215 LDNTLKLWDYSKGKCLKTYTGHKNEK---YCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 271
Query: 217 AKVVLNL 223
++V L
Sbjct: 272 KEIVQKL 278
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 81.6 bits (200), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 110/229 (48%), Gaps = 22/229 (9%)
Query: 35 NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ---S 91
N + L+GH VS ++ P+ + L +SS D+ +W + G+F+ S
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIW--------GAYDGKFEKTIS 65
Query: 92 GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN 151
GH + V+ S S+S + VS S D T ++WD + + ++T GH V F P N
Sbjct: 66 GHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 152 RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYV 211
+GS D + R++D++TG L+ H + V+++ F+ G L+ + +G C +
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKT-LPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRI 178
Query: 212 WDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF 260
WDT + L +L + ++ + S +G + + D LK+W +
Sbjct: 179 WDTASGQC---LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 224
Score = 67.4 bits (163), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 83/187 (44%), Gaps = 15/187 (8%)
Query: 40 RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG--LRTSVFGGEFQSGHTADV 97
+ L GH YV CC + P + +++ S D++ +WD+ TG L+T H+ V
Sbjct: 104 KTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVRIWDVKTGKCLKT-------LPAHSDPV 155
Query: 98 LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS 157
+V + S + VS S D R+WDT V+ VKF P+G +
Sbjct: 156 SAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 214
Query: 158 DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS-GRLLFAGYSNGDCYVWDTLL 216
D T +L+D G L+ Y E + FS++ G+ + +G + Y+W+
Sbjct: 215 LDNTLKLWDYSKGKCLKTYTGHKNEK---YCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 271
Query: 217 AKVVLNL 223
++V L
Sbjct: 272 KEIVQKL 278
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 80.9 bits (198), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 109/229 (47%), Gaps = 22/229 (9%)
Query: 35 NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ---S 91
N + L+GH VS ++ P+ + L SS D+ +W + G+F+ S
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGE-WLAASSADKLIKIW--------GAYDGKFEKTIS 65
Query: 92 GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN 151
GH + V+ S S+S + VS S D T ++WD + + ++T GH V F P N
Sbjct: 66 GHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVS-SGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 152 RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYV 211
+GS D + R++D++TG L+ H + V+++ F+ G L+ + +G C +
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKT-LPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRI 178
Query: 212 WDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF 260
WDT + L +L + ++ + S +G + + D LK+W +
Sbjct: 179 WDTASGQC---LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 224
Score = 67.4 bits (163), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 83/187 (44%), Gaps = 15/187 (8%)
Query: 40 RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG--LRTSVFGGEFQSGHTADV 97
+ L GH YV CC + P + +++ S D++ +WD+ TG L+T H+ V
Sbjct: 104 KTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVRIWDVKTGKCLKT-------LPAHSDPV 155
Query: 98 LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS 157
+V + S + VS S D R+WDT V+ VKF P+G +
Sbjct: 156 SAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 214
Query: 158 DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS-GRLLFAGYSNGDCYVWDTLL 216
D T +L+D G L+ Y E + FS++ G+ + +G + Y+W+
Sbjct: 215 LDNTLKLWDYSKGKCLKTYTGHKNEK---YCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 271
Query: 217 AKVVLNL 223
++V L
Sbjct: 272 KEIVQKL 278
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 93/215 (43%), Gaps = 18/215 (8%)
Query: 1 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 60
++ AFSP + + GG D+ ++N+ G + H +VSC ++ P D
Sbjct: 113 LSVAFSPDNRQIVSGGRDNALRVWNVK------GECMHTLSRGAHTDWVSCVRFSPSLDA 166
Query: 61 HLITSSG-DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTA 119
+I S G D +WD+ TG + GHT V SV++S S + S D A
Sbjct: 167 PVIVSGGWDNLVKVWDLATGRLVTDL-----KGHTNYVTSVTVSPDGS-LCASSDKDGVA 220
Query: 120 RLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQ 179
RLWD G +N + F P+ ++ G R+FD+ + +
Sbjct: 221 RLWDLTKGEALSEMAAG--APINQICFSPNRYWMCAATEKGI-RIFDLENKDIIVELAPE 277
Query: 180 H--GENEIPHVTSIAFSISGRLLFAGYSNGDCYVW 212
H + +P SIA+S G L++GY++ VW
Sbjct: 278 HQGSKKIVPECVSIAWSADGSTLYSGYTDNVIRVW 312
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 103/226 (45%), Gaps = 18/226 (7%)
Query: 41 MLSGHKGYVS--CCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSV----FGGEFQSGHT 94
L+GH+G+V+ C P+ T ++++S D+T + W +S GH+
Sbjct: 8 QLTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHS 67
Query: 95 ADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFG 154
A V V++S +N VS S D + RLW+ + + F GH DV +V F PD +
Sbjct: 68 AFVSDVALS-NNGNFAVSASWDHSLRLWNLQ-NGQCQYKFLGHTKDVLSVAFSPDNRQIV 125
Query: 155 TGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS--GRLLFAGYSNGDCYVW 212
+G D R+++++ + H + V+ + FS S ++ +G + VW
Sbjct: 126 SGGRDNALRVWNVKGECMHTLSRGAHTD----WVSCVRFSPSLDAPVIVSGGWDNLVKVW 181
Query: 213 DTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 258
D ++V +L H +T + +S DGS + D ++W
Sbjct: 182 DLATGRLVTDL----KGHTNYVTSVTVSPDGSLCASSDKDGVARLW 223
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 99/266 (37%), Gaps = 61/266 (22%)
Query: 40 RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLS 99
R L GH +VS + + +++S D + LW++ G F GHT DVLS
Sbjct: 61 RRLEGHSAFVSDVA-LSNNGNFAVSASWDHSLRLWNLQNGQCQYKF-----LGHTKDVLS 114
Query: 100 VSISGSNSRMFVSGSCDSTARLWDTR---------------------------------- 125
V+ S N R VSG D+ R+W+ +
Sbjct: 115 VAFSPDN-RQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGG 173
Query: 126 ----------VASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQV 175
R V GH V +V PDG+ + DG RL+D+ G L
Sbjct: 174 WDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSE 233
Query: 176 YYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSL-QNSHEGRI 234
N+ I FS + + A G ++D +++ L Q S +
Sbjct: 234 MAAGAPINQ------ICFSPNRYWMCAATEKG-IRIFDLENKDIIVELAPEHQGSKKIVP 286
Query: 235 TCLGL--SADGSALCTGSWDTNLKIW 258
C+ + SADGS L +G D +++W
Sbjct: 287 ECVSIAWSADGSTLYSGYTDNVIRVW 312
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 74.3 bits (181), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 69/278 (24%), Positives = 118/278 (42%), Gaps = 43/278 (15%)
Query: 5 FSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLIT 64
FSP G+ +A G D + I+++ N + +L GH+ + Y P D L++
Sbjct: 131 FSPDGKFLATGAEDRLIRIWDIE-------NRKIVMILQGHEQDIYSLDYFPSGD-KLVS 182
Query: 65 SSGDQTCVLWDITTG---LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARL 121
SGD+T +WD+ TG L S+ G V +V++S + + +GS D R+
Sbjct: 183 GSGDRTVRIWDLRTGQCSLTLSIEDG---------VTTVAVSPGDGKYIAAGSLDRAVRV 233
Query: 122 WDTRVASRAVR------TFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQL-- 173
WD+ R + GH+ V +V F DG +GS D + +L++++ +
Sbjct: 234 WDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSD 293
Query: 174 ---------QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLG 224
+V Y H + V S+A + + + +G + WD +L L
Sbjct: 294 SKTPNSGTCEVTYIGHKD----FVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ 349
Query: 225 SLQNSHEGRITCLG--LSADGSALCTGSWDTNLKIWAF 260
+NS G L + + TGS D +IW +
Sbjct: 350 GHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 387
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 76/269 (28%), Positives = 112/269 (41%), Gaps = 65/269 (24%)
Query: 40 RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLS 99
R L GH +VS + + ++ S D T LWD+TTG T F GHT DVLS
Sbjct: 80 RALRGHSHFVSDV-VISSDGQFALSGSWDGTLRLWDLTTGTTTRRF-----VGHTKDVLS 133
Query: 100 VSISGSNSRMFVSGSCDSTARLWDT----------------------------------- 124
V+ S S++R VSGS D T +LW+T
Sbjct: 134 VAFS-SDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCG 192
Query: 125 --------RVASRAVRTFH-GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQV 175
+A+ ++T H GH G +NTV PDG+ +G DG L+D+ G L
Sbjct: 193 WDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL-- 250
Query: 176 YYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLN------LGSLQNS 229
Y G + I ++ FS R + +WD L K++++ + + +
Sbjct: 251 -YTLDGGDII---NALCFS-PNRYWLCAATGPSIKIWD-LEGKIIVDELKQEVISTSSKA 304
Query: 230 HEGRITCLGLSADGSALCTGSWDTNLKIW 258
+ T L SADG L G D +++W
Sbjct: 305 EPPQCTSLAWSADGQTLFAGYTDNLVRVW 333
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 97/219 (44%), Gaps = 12/219 (5%)
Query: 42 LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS 101
L GH G+V+ P ++++S D+T ++W +T GH+ V V
Sbjct: 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 93
Query: 102 ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT 161
IS S+ + +SGS D T RLWD + R F GH DV +V F D + +GS D T
Sbjct: 94 IS-SDGQFALSGSWDGTLRLWDLTTGT-TTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKT 151
Query: 162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI--SGRLLFAGYSNGDCYVWDTLLAKV 219
+L++ + V + H E V+ + FS S ++ + + VW+ K+
Sbjct: 152 IKLWNTLGVCKYTVQDESHSE----WVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKL 207
Query: 220 VLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 258
N H G + + +S DGS +G D +W
Sbjct: 208 KTN----HIGHTGYLNTVTVSPDGSLCASGGKDGQAMLW 242
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 76/269 (28%), Positives = 112/269 (41%), Gaps = 65/269 (24%)
Query: 40 RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLS 99
R L GH +VS + + ++ S D T LWD+TTG T F GHT DVLS
Sbjct: 57 RALRGHSHFVSDV-VISSDGQFALSGSWDGTLRLWDLTTGTTTRRF-----VGHTKDVLS 110
Query: 100 VSISGSNSRMFVSGSCDSTARLWDT----------------------------------- 124
V+ S S++R VSGS D T +LW+T
Sbjct: 111 VAFS-SDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCG 169
Query: 125 --------RVASRAVRTFH-GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQV 175
+A+ ++T H GH G +NTV PDG+ +G DG L+D+ G L
Sbjct: 170 WDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL-- 227
Query: 176 YYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLN------LGSLQNS 229
Y G + I ++ FS R + +WD L K++++ + + +
Sbjct: 228 -YTLDGGDII---NALCFS-PNRYWLCAATGPSIKIWD-LEGKIIVDELKQEVISTSSKA 281
Query: 230 HEGRITCLGLSADGSALCTGSWDTNLKIW 258
+ T L SADG L G D +++W
Sbjct: 282 EPPQCTSLAWSADGQTLFAGYTDNLVRVW 310
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 97/219 (44%), Gaps = 12/219 (5%)
Query: 42 LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS 101
L GH G+V+ P ++++S D+T ++W +T GH+ V V
Sbjct: 11 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 70
Query: 102 ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT 161
IS S+ + +SGS D T RLWD + R F GH DV +V F D + +GS D T
Sbjct: 71 IS-SDGQFALSGSWDGTLRLWDLTTGT-TTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKT 128
Query: 162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI--SGRLLFAGYSNGDCYVWDTLLAKV 219
+L++ + V + H E V+ + FS S ++ + + VW+ K+
Sbjct: 129 IKLWNTLGVCKYTVQDESHSE----WVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKL 184
Query: 220 VLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 258
N H G + + +S DGS +G D +W
Sbjct: 185 KTN----HIGHTGYLNTVTVSPDGSLCASGGKDGQAMLW 219
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 104/231 (45%), Gaps = 34/231 (14%)
Query: 32 KDGNLPVSRMLSGHKGYV-SCCQYVPDEDTHLITSSGDQTCVLWDITTG--LRTSVFGGE 88
+ G L ++L GH +V +C Q+ + +++ S D T +W TG LRT V
Sbjct: 104 RRGELKSPKVLKGHDDHVITCLQFCGNR---IVSGSDDNTLKVWSAVTGKCLRTLV---- 156
Query: 89 FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP 148
GHT V S S + +SGS D T ++W+ + T +GH V +
Sbjct: 157 ---GHTGGVWS---SQMRDNIIISGSTDRTLKVWNAETGE-CIHTLYGHTSTVRCMHLHE 209
Query: 149 DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSI-AFSISGRLLFAGYSNG 207
R +GS D T R++DI TG L V + HV ++ GR + +G +
Sbjct: 210 --KRVVSGSRDATLRVWDIETGQCLHVL--------MGHVAAVRCVQYDGRRVVSGAYDF 259
Query: 208 DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 258
VWD + L +LQ H R+ L DG + +GS DT++++W
Sbjct: 260 MVKVWD---PETETCLHTLQ-GHTNRV--YSLQFDGIHVVSGSLDTSIRVW 304
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/226 (23%), Positives = 98/226 (43%), Gaps = 25/226 (11%)
Query: 41 MLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSV 100
+L GH V C QY + +++ + D +WD T GHT V S+
Sbjct: 234 VLMGHVAAVRCVQY---DGRRVVSGAYDFMVKVWDPETETCLHTL-----QGHTNRVYSL 285
Query: 101 SISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG 160
G + VSGS D++ R+WD + + T GH+ + ++ N +G+ D
Sbjct: 286 QFDGIH---VVSGSLDTSIRVWDVETGN-CIHTLTGHQSLTSGMEL--KDNILVSGNADS 339
Query: 161 TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIA-FSISGRLLFAGYSNGDCYVWDTLLAKV 219
T +++DI+TG LQ G N+ H +++ + + +G +WD +
Sbjct: 340 TVKIWDIKTGQCLQTL---QGPNK--HQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEF 394
Query: 220 VLNLGSLQNSHEGRITCLGLSADGSALCT-----GSWDTNLKIWAF 260
+ NL +L++ G + +++ +C G+ +T L + F
Sbjct: 395 IRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDF 440
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 78/165 (47%), Gaps = 24/165 (14%)
Query: 9 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD 68
G+ V G D + +++ + T L GH V Q+ + H+++ S D
Sbjct: 249 GRRVVSGAYDFMVKVWDPETET-------CLHTLQGHTNRVYSLQF---DGIHVVSGSLD 298
Query: 69 QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS 128
+ +WD+ TG +GH + + + + + VSG+ DST ++WD +
Sbjct: 299 TSIRVWDVETGNCIHTL-----TGHQSLTSGMELKDN---ILVSGNADSTVKIWDIKTG- 349
Query: 129 RAVRTFHG---HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG 170
+ ++T G H+ V ++F + N T SDDGT +L+D++TG
Sbjct: 350 QCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTG 392
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 80/159 (50%), Gaps = 19/159 (11%)
Query: 9 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD 68
G V C D +++++ SPTD + + R+L GH+ V+ + +D +++++SGD
Sbjct: 224 GMMVTCSK-DRSIAVWDMASPTD----ITLRRVLVGHRAAVNVVDF---DDKYIVSASGD 275
Query: 69 QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS 128
+T +W+ +T EF ++ R+ VSGS D+T RLWD +
Sbjct: 276 RTIKVWNTSTC--------EFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGA 327
Query: 129 RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDI 167
+R GHE V ++F D R +G+ DG +++D+
Sbjct: 328 -CLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDL 363
Score = 63.9 bits (154), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 78/295 (26%), Positives = 119/295 (40%), Gaps = 70/295 (23%)
Query: 10 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 69
Q + G D+ I++ N+ L R+L+GH G V C QY ++ +IT S D
Sbjct: 144 QKIVSGLRDNTIKIWDKNT-------LECKRILTGHTGSVLCLQY---DERVIITGSSDS 193
Query: 70 TCVLWDITTG---------------LR-----------------------TSVFGGEFQS 91
T +WD+ TG LR T +
Sbjct: 194 TVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLV 253
Query: 92 GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN 151
GH A +V++ + + VS S D T ++W+T VRT +GH+ + +++
Sbjct: 254 GHRA---AVNVVDFDDKYIVSASGDRTIKVWNTSTCE-FVRTLNGHKRGIACLQY--RDR 307
Query: 152 RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYV 211
+GS D T RL+DI G L+V G E+ V I F + + +G +G V
Sbjct: 308 LVVSGSSDNTIRLWDIECGACLRVL---EGHEEL--VRCIRF--DNKRIVSGAYDGKIKV 360
Query: 212 WDTLLA------KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF 260
WD + A L L +L H GR+ L D + + S D + IW F
Sbjct: 361 WDLVAALDPRAPAGTLCLRTLV-EHSGRV--FRLQFDEFQIVSSSHDDTILIWDF 412
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/253 (21%), Positives = 93/253 (36%), Gaps = 70/253 (27%)
Query: 49 VSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSR 108
V C QY +D +++ D T +WD + ++ +GHT VL + + R
Sbjct: 136 VYCLQY---DDQKIVSGLRDNTIKIWD-----KNTLECKRILTGHTGSVLCLQY---DER 184
Query: 109 MFVSGSCDSTARLWDTRVAS----------------------------RAV--------- 131
+ ++GS DST R+WD R++
Sbjct: 185 VIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPT 244
Query: 132 -----RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIP 186
R GH VN V F D + S D T ++++ T ++ +G
Sbjct: 245 DITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTL---NG----- 294
Query: 187 HVTSIA-FSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSA 245
H IA RL+ +G S+ +WD + L HE + C+ D
Sbjct: 295 HKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVL----EGHEELVRCIRF--DNKR 348
Query: 246 LCTGSWDTNLKIW 258
+ +G++D +K+W
Sbjct: 349 IVSGAYDGKIKVW 361
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 75/174 (43%), Gaps = 25/174 (14%)
Query: 5 FSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLIT 64
FS GQ +A G D +F + G + + H+ V CC + D D+++ T
Sbjct: 623 FSQDGQRIASCGADKTLQVFKAET-----GEKLLD--IKAHEDEVLCCAFSSD-DSYIAT 674
Query: 65 SSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS------GSNSRMFVSGSCDST 118
S D+ +WD TG + HT D S ++ SN + +GS D
Sbjct: 675 CSADKKVKIWDSATG----------KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFF 724
Query: 119 ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ 172
+LWD T GH VN +F PD + S DGT RL+D+R+ ++
Sbjct: 725 LKLWDLN-QKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANE 777
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 92/217 (42%), Gaps = 32/217 (14%)
Query: 3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLS---GHKGYVSCCQYVPDED 59
C SP + VA G D I L P +R+ S GHK V Q+ D
Sbjct: 967 CCLSPHLEYVAFGDEDGAIKIIEL----------PNNRVFSSGVGHKKAVRHIQFTADGK 1016
Query: 60 THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTA 119
T LI+SS D +W+ TG F H V + +SR+ +S S D T
Sbjct: 1017 T-LISSSEDSVIQVWNWQTGDYV------FLQAHQETVKDFRLL-QDSRL-LSWSFDGTV 1067
Query: 120 RLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRL--FDIRTGHQLQVYY 177
++W+ + R R F H+G V + D +F + S D T ++ FD+ L +
Sbjct: 1068 KVWNV-ITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDL-----LSPLH 1121
Query: 178 QQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT 214
+ G N V AFS+ G LL G NG+ +W+
Sbjct: 1122 ELKGHNGC--VRCSAFSLDGILLATGDDNGEIRIWNV 1156
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 79/170 (46%), Gaps = 17/170 (10%)
Query: 5 FSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLIT 64
F+ G+++ DSV ++N + G+ L H+ V + + +D+ L++
Sbjct: 1011 FTADGKTLISSSEDSVIQVWNWQT-----GDYV---FLQAHQETVKDFRLL--QDSRLLS 1060
Query: 65 SSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDT 124
S D T +W++ TG F + H VLS +IS S++ F S S D TA++W
Sbjct: 1061 WSFDGTVKVWNVITGRIERDF-----TCHQGTVLSCAIS-SDATKFSSTSADKTAKIWSF 1114
Query: 125 RVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQ 174
+ S + GH G V F DG TG D+G R++++ G L
Sbjct: 1115 DLLS-PLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLH 1163
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 74/294 (25%), Positives = 116/294 (39%), Gaps = 61/294 (20%)
Query: 3 CAFSPTGQSVACGGLDSVC-SIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTH 61
C FSP +A L C ++N+ D L V+ GH +V + PD +
Sbjct: 846 CDFSPYDH-LAVIALSQYCVELWNI------DSRLKVADC-RGHLSWVHGVMFSPDGSSF 897
Query: 62 LITSSGDQTCVLWDITTGLRTS--VFGGE----FQSGHTADVLSVS-------ISGSNSR 108
L T+S DQT +W+ + S V E FQ T VL+V I+G +
Sbjct: 898 L-TASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETM-VLAVDNIRGLQLIAGKTGQ 955
Query: 109 M------FVSGSCDS----------------TARLWDTRVASRAVRTFHGHEGDVNTVKF 146
+ VS C S L + RV S V GH+ V ++F
Sbjct: 956 IDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGV----GHKKAVRHIQF 1011
Query: 147 FPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN 206
DG + S+D ++++ +TG V+ Q H E V RLL + +
Sbjct: 1012 TADGKTLISSSEDSVIQVWNWQTGDY--VFLQAHQET----VKDFRLLQDSRLLSWSF-D 1064
Query: 207 GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF 260
G VW+ + ++ + H+G + +S+D + + S D KIW+F
Sbjct: 1065 GTVKVWNVITGRIERDF----TCHQGTVLSCAISSDATKFSSTSADKTAKIWSF 1114
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 67/298 (22%), Positives = 117/298 (39%), Gaps = 58/298 (19%)
Query: 3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKG-------YVSCCQYV 55
C FSP + +A D ++++ S ++ ++ V R + V CC +
Sbjct: 749 CRFSPDDELLASCSADGTLRLWDVRSANER-KSINVKRFFLSSEDPPEDVEVIVKCCSWS 807
Query: 56 PDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC 115
D D I + +L+DI TS E +GH + + S + ++ S
Sbjct: 808 ADGDK--IIVAAKNKVLLFDI----HTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALS- 860
Query: 116 DSTARLW--DTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT---- 169
LW D+R+ R GH V+ V F PDG+ F T SDD T R+++ +
Sbjct: 861 QYCVELWNIDSRLKVADCR---GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKN 917
Query: 170 -----GHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVL--- 221
++ V +Q ENE + +I G L AG + Y+ + ++ L
Sbjct: 918 SAIVLKQEIDVVFQ---ENET--MVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPH 972
Query: 222 -------------NLGSLQNS--------HEGRITCLGLSADGSALCTGSWDTNLKIW 258
+ L N+ H+ + + +ADG L + S D+ +++W
Sbjct: 973 LEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVW 1030
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 103/275 (37%), Gaps = 43/275 (15%)
Query: 1 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 60
+ CAFS +A D I++ S T K + H V+CC + ++
Sbjct: 661 LCCAFSSDDSYIATCSADKKVKIWD--SATGK-----LVHTYDEHSEQVNCCHFT-NKSN 712
Query: 61 HLITSSG--DQTCVLWDITTG-LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS 117
HL+ ++G D LWD+ R ++FG HT V S + + S S D
Sbjct: 713 HLLLATGSNDFFLKLWDLNQKECRNTMFG------HTNSVNHCRFS-PDDELLASCSADG 765
Query: 118 TARLWDTRVASR-----AVRTFHGHEGDVNTVKFF-------PDGNRFGTGSDDGTCRLF 165
T RLWD R A+ R F E V+ DG++ + + LF
Sbjct: 766 TLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVL-LF 824
Query: 166 DIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVW--DTLLAKVVLNL 223
DI T L + H + FS L S +W D+ L KV
Sbjct: 825 DIHTSGLLAEIHTGHHST----IQYCDFSPYDHLAVIALSQYCVELWNIDSRL-KVADCR 879
Query: 224 GSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 258
G L H + S DGS+ T S D +++W
Sbjct: 880 GHLSWVHG-----VMFSPDGSSFLTASDDQTIRVW 909
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 67/167 (40%), Gaps = 13/167 (7%)
Query: 92 GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN 151
GH V + + ++ + +S S DS ++W+ + H+ V + D +
Sbjct: 1001 GHKKAVRHIQFT-ADGKTLISSSEDSVIQVWNWQTGDYVF--LQAHQETVKDFRLLQD-S 1056
Query: 152 RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYV 211
R + S DGT +++++ TG + + G V S A S + ++ +
Sbjct: 1057 RLLSWSFDGTVKVWNVITGRIERDFTCHQGT-----VLSCAISSDATKFSSTSADKTAKI 1111
Query: 212 WDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 258
W L + L H G + C S DG L TG + ++IW
Sbjct: 1112 WSFDLLSPLHEL----KGHNGCVRCSAFSLDGILLATGDDNGEIRIW 1154
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 55/148 (37%), Gaps = 16/148 (10%)
Query: 118 TARLWDTRVASRAVRTF-----HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ 172
T RL+ + + ++ H V F DG R + D T ++F TG +
Sbjct: 590 TGRLYLEWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEK 649
Query: 173 LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEG 232
L E V AFS + ++ +WD+ K+V + H
Sbjct: 650 LLDIKAHEDE-----VLCCAFSSDDSYIATCSADKKVKIWDSATGKLV----HTYDEHSE 700
Query: 233 RITCLGLSADGS--ALCTGSWDTNLKIW 258
++ C + + L TGS D LK+W
Sbjct: 701 QVNCCHFTNKSNHLLLATGSNDFFLKLW 728
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 75/174 (43%), Gaps = 25/174 (14%)
Query: 5 FSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLIT 64
FS GQ +A G D +F + G + + H+ V CC + D D+++ T
Sbjct: 630 FSQDGQRIASCGADKTLQVFKAET-----GEKLLD--IKAHEDEVLCCAFSSD-DSYIAT 681
Query: 65 SSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS------GSNSRMFVSGSCDST 118
S D+ +WD TG + HT D S ++ SN + +GS D
Sbjct: 682 CSADKKVKIWDSATG----------KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFF 731
Query: 119 ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ 172
+LWD T GH VN +F PD + S DGT RL+D+R+ ++
Sbjct: 732 LKLWDLN-QKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANE 784
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 92/217 (42%), Gaps = 32/217 (14%)
Query: 3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLS---GHKGYVSCCQYVPDED 59
C SP + VA G D I L P +R+ S GHK V Q+ D
Sbjct: 974 CCLSPHLEYVAFGDEDGAIKIIEL----------PNNRVFSSGVGHKKAVRHIQFTADGK 1023
Query: 60 THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTA 119
T LI+SS D +W+ TG F H V + +SR+ +S S D T
Sbjct: 1024 T-LISSSEDSVIQVWNWQTGDYV------FLQAHQETVKDFRLL-QDSRL-LSWSFDGTV 1074
Query: 120 RLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRL--FDIRTGHQLQVYY 177
++W+ + R R F H+G V + D +F + S D T ++ FD+ L +
Sbjct: 1075 KVWNV-ITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDL-----LSPLH 1128
Query: 178 QQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT 214
+ G N V AFS+ G LL G NG+ +W+
Sbjct: 1129 ELKGHNGC--VRCSAFSLDGILLATGDDNGEIRIWNV 1163
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 79/170 (46%), Gaps = 17/170 (10%)
Query: 5 FSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLIT 64
F+ G+++ DSV ++N + G+ L H+ V + + +D+ L++
Sbjct: 1018 FTADGKTLISSSEDSVIQVWNWQT-----GDYV---FLQAHQETVKDFRLL--QDSRLLS 1067
Query: 65 SSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDT 124
S D T +W++ TG F + H VLS +IS S++ F S S D TA++W
Sbjct: 1068 WSFDGTVKVWNVITGRIERDF-----TCHQGTVLSCAIS-SDATKFSSTSADKTAKIWSF 1121
Query: 125 RVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQ 174
+ S + GH G V F DG TG D+G R++++ G L
Sbjct: 1122 DLLS-PLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLH 1170
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 74/294 (25%), Positives = 116/294 (39%), Gaps = 61/294 (20%)
Query: 3 CAFSPTGQSVACGGLDSVC-SIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTH 61
C FSP +A L C ++N+ D L V+ GH +V + PD +
Sbjct: 853 CDFSPYDH-LAVIALSQYCVELWNI------DSRLKVADC-RGHLSWVHGVMFSPDGSSF 904
Query: 62 LITSSGDQTCVLWDITTGLRTS--VFGGE----FQSGHTADVLSVS-------ISGSNSR 108
L T+S DQT +W+ + S V E FQ T VL+V I+G +
Sbjct: 905 L-TASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETM-VLAVDNIRGLQLIAGKTGQ 962
Query: 109 M------FVSGSCDS----------------TARLWDTRVASRAVRTFHGHEGDVNTVKF 146
+ VS C S L + RV S V GH+ V ++F
Sbjct: 963 IDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGV----GHKKAVRHIQF 1018
Query: 147 FPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN 206
DG + S+D ++++ +TG V+ Q H E V RLL + +
Sbjct: 1019 TADGKTLISSSEDSVIQVWNWQTGDY--VFLQAHQET----VKDFRLLQDSRLLSWSF-D 1071
Query: 207 GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF 260
G VW+ + ++ + H+G + +S+D + + S D KIW+F
Sbjct: 1072 GTVKVWNVITGRIERDF----TCHQGTVLSCAISSDATKFSSTSADKTAKIWSF 1121
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 67/298 (22%), Positives = 117/298 (39%), Gaps = 58/298 (19%)
Query: 3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKG-------YVSCCQYV 55
C FSP + +A D ++++ S ++ ++ V R + V CC +
Sbjct: 756 CRFSPDDELLASCSADGTLRLWDVRSANER-KSINVKRFFLSSEDPPEDVEVIVKCCSWS 814
Query: 56 PDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC 115
D D I + +L+DI TS E +GH + + S + ++ S
Sbjct: 815 ADGDK--IIVAAKNKVLLFDI----HTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALS- 867
Query: 116 DSTARLW--DTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT---- 169
LW D+R+ R GH V+ V F PDG+ F T SDD T R+++ +
Sbjct: 868 QYCVELWNIDSRLKVADCR---GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKN 924
Query: 170 -----GHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVL--- 221
++ V +Q ENE + +I G L AG + Y+ + ++ L
Sbjct: 925 SAIVLKQEIDVVFQ---ENET--MVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPH 979
Query: 222 -------------NLGSLQNS--------HEGRITCLGLSADGSALCTGSWDTNLKIW 258
+ L N+ H+ + + +ADG L + S D+ +++W
Sbjct: 980 LEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVW 1037
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 103/275 (37%), Gaps = 43/275 (15%)
Query: 1 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 60
+ CAFS +A D I++ S T K + H V+CC + ++
Sbjct: 668 LCCAFSSDDSYIATCSADKKVKIWD--SATGK-----LVHTYDEHSEQVNCCHFT-NKSN 719
Query: 61 HLITSSG--DQTCVLWDITTG-LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS 117
HL+ ++G D LWD+ R ++FG HT V S + + S S D
Sbjct: 720 HLLLATGSNDFFLKLWDLNQKECRNTMFG------HTNSVNHCRFS-PDDELLASCSADG 772
Query: 118 TARLWDTRVASR-----AVRTFHGHEGDVNTVKFF-------PDGNRFGTGSDDGTCRLF 165
T RLWD R A+ R F E V+ DG++ + + LF
Sbjct: 773 TLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVL-LF 831
Query: 166 DIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVW--DTLLAKVVLNL 223
DI T L + H + FS L S +W D+ L KV
Sbjct: 832 DIHTSGLLAEIHTGHHST----IQYCDFSPYDHLAVIALSQYCVELWNIDSRL-KVADCR 886
Query: 224 GSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 258
G L H + S DGS+ T S D +++W
Sbjct: 887 GHLSWVHG-----VMFSPDGSSFLTASDDQTIRVW 916
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 67/167 (40%), Gaps = 13/167 (7%)
Query: 92 GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN 151
GH V + + ++ + +S S DS ++W+ + H+ V + D +
Sbjct: 1008 GHKKAVRHIQFT-ADGKTLISSSEDSVIQVWNWQTGDYVF--LQAHQETVKDFRLLQD-S 1063
Query: 152 RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYV 211
R + S DGT +++++ TG + + G V S A S + ++ +
Sbjct: 1064 RLLSWSFDGTVKVWNVITGRIERDFTCHQGT-----VLSCAISSDATKFSSTSADKTAKI 1118
Query: 212 WDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 258
W L + L H G + C S DG L TG + ++IW
Sbjct: 1119 WSFDLLSPLHEL----KGHNGCVRCSAFSLDGILLATGDDNGEIRIW 1161
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 55/148 (37%), Gaps = 16/148 (10%)
Query: 118 TARLWDTRVASRAVRTF-----HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ 172
T RL+ + + ++ H V F DG R + D T ++F TG +
Sbjct: 597 TGRLYLEWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEK 656
Query: 173 LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEG 232
L E V AFS + ++ +WD+ K+V + H
Sbjct: 657 LLDIKAHEDE-----VLCCAFSSDDSYIATCSADKKVKIWDSATGKLV----HTYDEHSE 707
Query: 233 RITCLGLSADGS--ALCTGSWDTNLKIW 258
++ C + + L TGS D LK+W
Sbjct: 708 QVNCCHFTNKSNHLLLATGSNDFFLKLW 735
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 77/151 (50%), Gaps = 14/151 (9%)
Query: 29 PTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE 88
P + P LSGH+ V+ + P ++++S D T +WD TG +
Sbjct: 91 PKEWIPRPPEKYALSGHRSPVTRVIFHPVFSV-MVSASEDATIKVWDYETG--------D 141
Query: 89 FQ---SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVK 145
F+ GHT V +S S ++ S S D T +LWD + +RT HGH+ +V++V
Sbjct: 142 FERTLKGHTDSVQDISFDHSG-KLLASCSADMTIKLWDFQ-GFECIRTMHGHDHNVSSVS 199
Query: 146 FFPDGNRFGTGSDDGTCRLFDIRTGHQLQVY 176
P+G+ + S D T ++++++TG+ ++ +
Sbjct: 200 IMPNGDHIVSASRDKTIKMWEVQTGYCVKTF 230
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 95/240 (39%), Gaps = 39/240 (16%)
Query: 40 RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLS 99
R + GH VS +P+ D H++++S D+T +W++ TG F +GH V
Sbjct: 186 RTMHGHDHNVSSVSIMPNGD-HIVSASRDKTIKMWEVQTGYCVKTF-----TGHREWVRM 239
Query: 100 VSISGSNSRMFVSGSCDSTARLWDTRVASRAVRT-FHGHEGDVNTVKFFPD--------- 149
V + + S S D T R+W VA++ + H V + + P+
Sbjct: 240 VR-PNQDGTLIASCSNDQTVRVW--VVATKECKAELREHRHVVECISWAPESSYSSISEA 296
Query: 150 -----------GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR 198
G +GS D T +++D+ TG L V + F G+
Sbjct: 297 TGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN-----WVRGVLFHSGGK 351
Query: 199 LLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 258
+ + + VWD + + L N+HE +T L + TGS D +K+W
Sbjct: 352 FILSCADDKTLRVWDYKNKRCMKTL----NAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 63/148 (42%), Gaps = 30/148 (20%)
Query: 42 LSGHKGYVSCCQYVPDED-------------------THLITSSGDQTCVLWDITTG--L 80
L H+ V C + P+ L++ S D+T +WD++TG L
Sbjct: 272 LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL 331
Query: 81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGD 140
T V GH V V + S + +S + D T R+WD + R ++T + HE
Sbjct: 332 MTLV-------GHDNWVRGV-LFHSGGKFILSCADDKTLRVWDYK-NKRCMKTLNAHEHF 382
Query: 141 VNTVKFFPDGNRFGTGSDDGTCRLFDIR 168
V ++ F TGS D T ++++ R
Sbjct: 383 VTSLDFHKTAPYVVTGSVDQTVKVWECR 410
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 102/232 (43%), Gaps = 21/232 (9%)
Query: 41 MLSGHKGYVSCC-----QYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQS--GH 93
+L GH +V+ Q ++ LI+ S D+T ++W + + FG ++ GH
Sbjct: 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGH 75
Query: 94 TADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRF 153
V +++S N +S S D T RLWD R + R F GH+ +V +V F PD +
Sbjct: 76 NHFVSDLALSQENC-FAISSSWDKTLRLWDLRTGTTYKR-FVGHQSEVYSVAFSPDNRQI 133
Query: 154 GTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHV--TSIAFSISGRLLFAGYS-----N 206
+ + +L++I + +++ + + V + I S + FA Y +
Sbjct: 134 LSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWD 193
Query: 207 GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 258
G VW+T + +HE + L +S +G + TG D L IW
Sbjct: 194 GRLKVWNT-----NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIW 240
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 94/234 (40%), Gaps = 53/234 (22%)
Query: 2 TCAFSPTGQSVACGGLDSVCSIFNL-----NSPTDKDGNLPVSRMLSGHKGYVSCCQYVP 56
+ AFSP + + G + ++N+ S +K+ H +VSC +Y P
Sbjct: 123 SVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKEN----------HSDWVSCVRYSP 172
Query: 57 DEDTHLITSSGDQT--------CVLWDITTGLRTSVFGGEFQ-----SGHTADVLSVSIS 103
I S ++ V WD R V+ FQ H ++V +SIS
Sbjct: 173 ------IMKSANKVQPFAPYFASVGWD----GRLKVWNTNFQIRYTFKAHESNVNHLSIS 222
Query: 104 GSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCR 163
N + +G D +WD + R F +N + F P G+D G +
Sbjct: 223 -PNGKYIATGGKDKKLLIWDILNLTYPQREFDAG-STINQIAFNPKLQWVAVGTDQG-VK 279
Query: 164 LFDIRTGHQLQV----------YYQQHGENEIPHVTSIAFSISGRLLFAGYSNG 207
+F++ T + V Q G+N P TS+A++ G+ LFAG+++G
Sbjct: 280 IFNLMTQSKAPVCTIEAEPITKAEGQKGKN--PQCTSLAWNALGKKLFAGFTDG 331
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 71/174 (40%), Gaps = 14/174 (8%)
Query: 40 RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLS 99
+ GH+ V + PD + ++++ ++ LW+I + S E S + V
Sbjct: 112 KRFVGHQSEVYSVAFSPD-NRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRY 170
Query: 100 VSISGSNSRM------FVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRF 153
I S +++ F S D ++W+T R TF HE +VN + P+G
Sbjct: 171 SPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIR--YTFKAHESNVNHLSISPNGKYI 228
Query: 154 GTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG 207
TG D ++DI L + Y Q + + IAF+ + + G G
Sbjct: 229 ATGGKDKKLLIWDI-----LNLTYPQREFDAGSTINQIAFNPKLQWVAVGTDQG 277
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 108/285 (37%), Gaps = 75/285 (26%)
Query: 40 RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLS 99
R L+GH +V D L + S D LWD+ G+ T F GHT DVLS
Sbjct: 424 RRLTGHSHFVEDVVLSSDGQFAL-SGSWDGELRLWDLAAGVSTRRF-----VGHTKDVLS 477
Query: 100 VSISGSNSRMFVSGSCDSTARLWDT----------------------RVASRAVR----- 132
V+ S N R VS S D T +LW+T R + ++
Sbjct: 478 VAFSLDN-RQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVS 536
Query: 133 -------------------TFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQL 173
T GH G V+TV PDG+ +G DG L+D+ G +L
Sbjct: 537 ASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKL 596
Query: 174 QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGR 233
Y N + H ++ FS + L A +G +WD +V +L + +
Sbjct: 597 ---YSLEA-NSVIH--ALCFSPNRYWLCAATEHG-IKIWDLESKSIVEDLKVDLKAEAEK 649
Query: 234 I---------------TCLGLSADGSALCTGSWDTNLKIWAFGGY 263
T L SADGS L +G D +++W G Y
Sbjct: 650 ADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGRY 694
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 76/174 (43%), Gaps = 14/174 (8%)
Query: 92 GHTADVLSVSISGSNSRMFVSGSCDSTARLW----DTRVASRAVRTFHGHEGDVNTVKFF 147
HT V +++ N+ + VS S D + LW D + A R GH V V
Sbjct: 380 AHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLS 439
Query: 148 PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG 207
DG +GS DG RL+D+ G + + + V S+AFS+ R + + +
Sbjct: 440 SDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKD-----VLSVAFSLDNRQIVSASRDR 494
Query: 208 DCYVWDTL-LAKVVLNLGSLQNSHEGRITCLGLSAD--GSALCTGSWDTNLKIW 258
+W+TL K ++ G H ++C+ S + + + SWD +K+W
Sbjct: 495 TIKLWNTLGECKYTISEGG--EGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVW 546
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 68/277 (24%), Positives = 103/277 (37%), Gaps = 63/277 (22%)
Query: 31 DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ 90
D+ +PV R GH V C D + +++S D+T LWD+ TG F
Sbjct: 45 DQKFGVPV-RSFKGHSHIVQDCTLTAD-GAYALSASWDKTLRLWDVATGETYQRF----- 97
Query: 91 SGHTADVLSVSISGSNSRMFVSGSCDSTARLW---------------------------- 122
GH +DV+SV I S M +SGS D T ++W
Sbjct: 98 VGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA 156
Query: 123 ------------DTRVASRAVRTFH------GHEGDVNTVKFFPDGNRFGTGSDDGTCRL 164
D V + + F GH ++NT+ PDG + DG L
Sbjct: 157 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIML 216
Query: 165 FDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG-DCYVWDT--LLAKVVL 221
+++ + Y ++E V S+AFS + L A + G + D L+ +
Sbjct: 217 WNLAAKKAM---YTLSAQDE---VFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRP 270
Query: 222 NLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 258
+ E L SADG L G D +++W
Sbjct: 271 EFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 307
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 93/235 (39%), Gaps = 30/235 (12%)
Query: 42 LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQS--GHTADVLS 99
L GH G+V+ + L+++S D+T + W +T + FG +S GH+ V
Sbjct: 7 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK--FGVPVRSFKGHSHIVQD 64
Query: 100 VSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD 159
+++ + +S S D T RLWD R F GH+ DV +V + +GS D
Sbjct: 65 CTLTADGAYA-LSASWDKTLRLWDVATGETYQR-FVGHKSDVMSVDIDKKASMIISGSRD 122
Query: 160 GTCRLFDIR-------TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVW 212
T +++ I+ GH V + NE S+ +G
Sbjct: 123 KTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN-------------- 168
Query: 213 DTLLAKVVLNLGSLQNS---HEGRITCLGLSADGSALCTGSWDTNLKIWAFGGYR 264
D ++ LN ++ H I L S DG+ + + D + +W +
Sbjct: 169 DKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK 223
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 68/277 (24%), Positives = 103/277 (37%), Gaps = 63/277 (22%)
Query: 31 DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ 90
D+ +PV R GH V C D + +++S D+T LWD+ TG F
Sbjct: 51 DQKFGVPV-RSFKGHSHIVQDCTLTAD-GAYALSASWDKTLRLWDVATGETYQRF----- 103
Query: 91 SGHTADVLSVSISGSNSRMFVSGSCDSTARLW---------------------------- 122
GH +DV+SV I S M +SGS D T ++W
Sbjct: 104 VGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 123 ------------DTRVASRAVRTFH------GHEGDVNTVKFFPDGNRFGTGSDDGTCRL 164
D V + + F GH ++NT+ PDG + DG L
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIML 222
Query: 165 FDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG-DCYVWDT--LLAKVVL 221
+++ + Y ++E V S+AFS + L A + G + D L+ +
Sbjct: 223 WNLAAKKAM---YTLSAQDE---VFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRP 276
Query: 222 NLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 258
+ E L SADG L G D +++W
Sbjct: 277 EFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 92/235 (39%), Gaps = 30/235 (12%)
Query: 42 LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQS--GHTADVLS 99
L GH G+V+ + L+++S D+T + W +T + FG +S GH+ V
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK--FGVPVRSFKGHSHIVQD 70
Query: 100 VSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD 159
+++ + S S D T RLWD R F GH+ DV +V + +GS D
Sbjct: 71 CTLTADGAYAL-SASWDKTLRLWDVATGETYQR-FVGHKSDVMSVDIDKKASMIISGSRD 128
Query: 160 GTCRLFDIR-------TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVW 212
T +++ I+ GH V + NE S+ +G
Sbjct: 129 KTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN-------------- 174
Query: 213 DTLLAKVVLNLGSLQNS---HEGRITCLGLSADGSALCTGSWDTNLKIWAFGGYR 264
D ++ LN ++ H I L S DG+ + + D + +W +
Sbjct: 175 DKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK 229
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 68/277 (24%), Positives = 103/277 (37%), Gaps = 63/277 (22%)
Query: 31 DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ 90
D+ +PV R GH V C D + +++S D+T LWD+ TG F
Sbjct: 51 DQKFGVPV-RSFKGHSHIVQDCTLTAD-GAYALSASWDKTLRLWDVATGETYQRF----- 103
Query: 91 SGHTADVLSVSISGSNSRMFVSGSCDSTARLW---------------------------- 122
GH +DV+SV I S M +SGS D T ++W
Sbjct: 104 VGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 123 ------------DTRVASRAVRTFH------GHEGDVNTVKFFPDGNRFGTGSDDGTCRL 164
D V + + F GH ++NT+ PDG + DG L
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIML 222
Query: 165 FDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG-DCYVWDT--LLAKVVL 221
+++ + Y ++E V S+AFS + L A + G + D L+ +
Sbjct: 223 WNLAAKKAM---YTLSAQDE---VFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRP 276
Query: 222 NLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 258
+ E L SADG L G D +++W
Sbjct: 277 EFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 92/235 (39%), Gaps = 30/235 (12%)
Query: 42 LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQS--GHTADVLS 99
L GH G+V+ + L+++S D+T + W +T + FG +S GH+ V
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK--FGVPVRSFKGHSHIVQD 70
Query: 100 VSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD 159
+++ + S S D T RLWD R F GH+ DV +V + +GS D
Sbjct: 71 CTLTADGAYAL-SASWDKTLRLWDVATGETYQR-FVGHKSDVMSVDIDKKASMIISGSRD 128
Query: 160 GTCRLFDIR-------TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVW 212
T +++ I+ GH V + NE S+ +G
Sbjct: 129 KTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN-------------- 174
Query: 213 DTLLAKVVLNLGSLQNS---HEGRITCLGLSADGSALCTGSWDTNLKIWAFGGYR 264
D ++ LN ++ H I L S DG+ + + D + +W +
Sbjct: 175 DKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK 229
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 68/277 (24%), Positives = 103/277 (37%), Gaps = 63/277 (22%)
Query: 31 DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ 90
D+ +PV R GH V C D + +++S D+T LWD+ TG F
Sbjct: 51 DQKFGVPV-RSFKGHSHIVQDCTLTAD-GAYALSASWDKTLRLWDVATGETYQRF----- 103
Query: 91 SGHTADVLSVSISGSNSRMFVSGSCDSTARLW---------------------------- 122
GH +DV+SV I S M +SGS D T ++W
Sbjct: 104 VGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 123 ------------DTRVASRAVRTFH------GHEGDVNTVKFFPDGNRFGTGSDDGTCRL 164
D V + + F GH ++NT+ PDG + DG L
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIML 222
Query: 165 FDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG-DCYVWDT--LLAKVVL 221
+++ + Y ++E V S+AFS + L A + G + D L+ +
Sbjct: 223 WNLAAKKAM---YTLSAQDE---VFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRP 276
Query: 222 NLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 258
+ E L SADG L G D +++W
Sbjct: 277 EFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 93/235 (39%), Gaps = 30/235 (12%)
Query: 42 LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQS--GHTADVLS 99
L GH G+V+ + L+++S D+T + W +T + FG +S GH+ V
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK--FGVPVRSFKGHSHIVQD 70
Query: 100 VSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD 159
+++ + +S S D T RLWD R F GH+ DV +V + +GS D
Sbjct: 71 CTLTADGAYA-LSASWDKTLRLWDVATGETYQR-FVGHKSDVMSVDIDKKASMIISGSRD 128
Query: 160 GTCRLFDIR-------TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVW 212
T +++ I+ GH V + NE S+ +G
Sbjct: 129 KTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN-------------- 174
Query: 213 DTLLAKVVLNLGSLQNS---HEGRITCLGLSADGSALCTGSWDTNLKIWAFGGYR 264
D ++ LN ++ H I L S DG+ + + D + +W +
Sbjct: 175 DKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK 229
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 68/277 (24%), Positives = 103/277 (37%), Gaps = 63/277 (22%)
Query: 31 DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ 90
D+ +PV R GH V C D + +++S D+T LWD+ TG F
Sbjct: 51 DQKFGVPV-RSFKGHSHIVQDCTLTAD-GAYALSASWDKTLRLWDVATGETYQRF----- 103
Query: 91 SGHTADVLSVSISGSNSRMFVSGSCDSTARLW---------------------------- 122
GH +DV+SV I S M +SGS D T ++W
Sbjct: 104 VGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 123 ------------DTRVASRAVRTFH------GHEGDVNTVKFFPDGNRFGTGSDDGTCRL 164
D V + + F GH ++NT+ PDG + DG L
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIML 222
Query: 165 FDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG-DCYVWDT--LLAKVVL 221
+++ + Y ++E V S+AFS + L A + G + D L+ +
Sbjct: 223 WNLAAKKAM---YTLSAQDE---VFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRP 276
Query: 222 NLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 258
+ E L SADG L G D +++W
Sbjct: 277 EFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 92/235 (39%), Gaps = 30/235 (12%)
Query: 42 LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQS--GHTADVLS 99
L GH G+V+ + L+++S D+T + W +T + FG +S GH+ V
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK--FGVPVRSFKGHSHIVQD 70
Query: 100 VSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD 159
+++ + S S D T RLWD R F GH+ DV +V + +GS D
Sbjct: 71 CTLTADGAYAL-SASWDKTLRLWDVATGETYQR-FVGHKSDVMSVDIDKKASMIISGSRD 128
Query: 160 GTCRLFDIR-------TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVW 212
T +++ I+ GH V + NE S+ +G
Sbjct: 129 KTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN-------------- 174
Query: 213 DTLLAKVVLNLGSLQNS---HEGRITCLGLSADGSALCTGSWDTNLKIWAFGGYR 264
D ++ LN ++ H I L S DG+ + + D + +W +
Sbjct: 175 DKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK 229
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 58.2 bits (139), Expect = 4e-09, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 74/165 (44%), Gaps = 12/165 (7%)
Query: 42 LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS 101
L GH+ V + + +++ L++ S D T +W+I TG + F H VLS
Sbjct: 1046 LRGHQETVKDFRLL--KNSRLLSWSFDGTVKVWNIITGNKEKDF-----VCHQGTVLSCD 1098
Query: 102 ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT 161
IS ++ F S S D TA++W + + GH G V F D TG D+G
Sbjct: 1099 ISHDATK-FSSTSADKTAKIWSFDLL-LPLHELRGHNGCVRCSAFSVDSTLLATGDDNGE 1156
Query: 162 CRLFDIRTGHQLQVYYQQHGENEIPH---VTSIAFSISGRLLFAG 203
R++++ G L + E H VT + FS G++L +
Sbjct: 1157 IRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISA 1201
Score = 57.4 bits (137), Expect = 8e-09, Method: Composition-based stats.
Identities = 44/169 (26%), Positives = 70/169 (41%), Gaps = 15/169 (8%)
Query: 5 FSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLIT 64
FS GQ +A G D +F + G + + H+ V CC + D D + T
Sbjct: 629 FSEDGQRIASCGADKTLQVFKAET-----GEKLLE--IKAHEDEVLCCAFSTD-DRFIAT 680
Query: 65 SSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFV-SGSCDSTARLWD 123
S D+ +W+ TG + H+ V + S+ + + +GS D +LWD
Sbjct: 681 CSVDKKVKIWNSMTGELVHTY-----DEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWD 735
Query: 124 TRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ 172
T GH VN +F PD + S DGT +L+D + ++
Sbjct: 736 LN-QKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANE 783
Score = 56.2 bits (134), Expect = 2e-08, Method: Composition-based stats.
Identities = 69/253 (27%), Positives = 106/253 (41%), Gaps = 30/253 (11%)
Query: 3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHL 62
C SP Q +A G + I L + + SR HK V Q+ DE T L
Sbjct: 973 CCLSPHLQYIAFGDENGAIEILEL-----VNNRIFQSRF--QHKKTVWHIQFTADEKT-L 1024
Query: 63 ITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLW 122
I+SS D +W+ L +F GH V + NSR+ +S S D T ++W
Sbjct: 1025 ISSSDDAEIQVWNWQ--LDKCIF----LRGHQETVKDFRLL-KNSRL-LSWSFDGTVKVW 1076
Query: 123 DTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRL--FDIRTGHQLQVYYQQH 180
+ ++ + F H+G V + D +F + S D T ++ FD+ L ++
Sbjct: 1077 NIITGNKE-KDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDL-----LLPLHELR 1130
Query: 181 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQN----SHEGRITC 236
G N V AFS+ LL G NG+ +W+ +++ L +H G +T
Sbjct: 1131 GHNGC--VRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTD 1188
Query: 237 LGLSADGSALCTG 249
L S DG L +
Sbjct: 1189 LCFSPDGKMLISA 1201
Score = 49.7 bits (117), Expect = 2e-06, Method: Composition-based stats.
Identities = 50/176 (28%), Positives = 72/176 (40%), Gaps = 22/176 (12%)
Query: 3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDG--------NL--PVSRMLSGHKGYVSCC 52
C FSP + +A D +++ S ++ NL P M + V CC
Sbjct: 755 CRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDM----EVIVKCC 810
Query: 53 QYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVS 112
+ D I + L+DI TS GE +GH + + S N V+
Sbjct: 811 SW--SADGARIMVAAKNKIFLFDI----HTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVA 864
Query: 113 GSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR 168
S LW+T S+ V GH V+ V F PDG+ F T SDD T RL++ +
Sbjct: 865 LS-QYCVELWNTDSRSK-VADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETK 918
Score = 42.7 bits (99), Expect = 2e-04, Method: Composition-based stats.
Identities = 49/211 (23%), Positives = 91/211 (43%), Gaps = 21/211 (9%)
Query: 49 VSCCQYVPDEDTHL-ITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS 107
VSCC P HL + GD+ + +I + +F FQ H V + + ++
Sbjct: 970 VSCCCLSP----HLQYIAFGDENGAI-EILELVNNRIFQSRFQ--HKKTVWHIQFT-ADE 1021
Query: 108 RMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDI 167
+ +S S D+ ++W+ ++ GH+ V + + +R + S DGT ++++I
Sbjct: 1022 KTLISSSDDAEIQVWNWQLDKCIF--LRGHQETVKDFRLLKN-SRLLSWSFDGTVKVWNI 1078
Query: 168 RTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ 227
TG++ + + G V S S + ++ +W L +L L L+
Sbjct: 1079 ITGNKEKDFVCHQGT-----VLSCDISHDATKFSSTSADKTAKIWSFDL---LLPLHELR 1130
Query: 228 NSHEGRITCLGLSADGSALCTGSWDTNLKIW 258
H G + C S D + L TG + ++IW
Sbjct: 1131 -GHNGCVRCSAFSVDSTLLATGDDNGEIRIW 1160
Score = 37.7 bits (86), Expect = 0.006, Method: Composition-based stats.
Identities = 52/221 (23%), Positives = 84/221 (38%), Gaps = 32/221 (14%)
Query: 43 SGHKGYVSCCQYVPDEDTHLITSSGDQTCV-LWDITTGLRTSVFGGEFQSGHTADVLSVS 101
+GH + C + P HL + Q CV LW+ T R+ V GH + V V
Sbjct: 843 TGHHSTIQYCDFSPQ--NHLAVVALSQYCVELWN--TDSRSKVADCR---GHLSWVHGVM 895
Query: 102 ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT 161
S S F++ S D T RLW+T+ + E DV F + D
Sbjct: 896 FSPDGSS-FLTSSDDQTIRLWETKKVCKNSAVMLKQEVDV----VFQENEVMVLAVDH-- 948
Query: 162 CRLFDIRTGHQLQVYYQQHGENEI----PHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA 217
R + G Q+ Y + PH+ IAF G NG + + +
Sbjct: 949 IRRLQLINGRTGQIDYLTEAQVSCCCLSPHLQYIAF---------GDENGAIEILELVNN 999
Query: 218 KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 258
++ + + H+ + + +AD L + S D +++W
Sbjct: 1000 RIFQS----RFQHKKTVWHIQFTADEKTLISSSDDAEIQVW 1036
Score = 36.6 bits (83), Expect = 0.015, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 53/124 (42%), Gaps = 11/124 (8%)
Query: 137 HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS 196
H V F DG R + D T ++F TG +L + + H E+E V AFS
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKL-LEIKAH-EDE---VLCCAFSTD 674
Query: 197 GRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGL--SADGSALCTGSWDTN 254
R + + +W+++ ++V + H ++ C S+ L TGS D
Sbjct: 675 DRFIATCSVDKKVKIWNSMTGELV----HTYDEHSEQVNCCHFTNSSHHLLLATGSSDCF 730
Query: 255 LKIW 258
LK+W
Sbjct: 731 LKLW 734
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 57.0 bits (136), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 67/277 (24%), Positives = 102/277 (36%), Gaps = 63/277 (22%)
Query: 31 DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ 90
D+ +PV R GH V C D + +++S D+T LWD+ TG F
Sbjct: 51 DQKFGVPV-RSFKGHSHIVQDCTLTAD-GAYALSASWDKTLRLWDVATGETYQRF----- 103
Query: 91 SGHTADVLSVSISGSNSRMFVSGSCDSTARLW---------------------------- 122
GH +DV SV I S + +SGS D T ++W
Sbjct: 104 VGHKSDVXSVDIDKKASXI-ISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 123 ------------DTRVASRAVRTFH------GHEGDVNTVKFFPDGNRFGTGSDDGTCRL 164
D V + + F GH ++NT+ PDG + DG L
Sbjct: 163 DDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXL 222
Query: 165 FDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG-DCYVWDT--LLAKVVL 221
+++ + Y ++E V S+AFS + L A + G + D L+ +
Sbjct: 223 WNLAAK---KAXYTLSAQDE---VFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRP 276
Query: 222 NLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 258
+ E L SADG L G D +++W
Sbjct: 277 EFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 91/237 (38%), Gaps = 34/237 (14%)
Query: 42 LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQS--GHTADVLS 99
L GH G+V+ + L+++S D+T + W +T + FG +S GH+ V
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK--FGVPVRSFKGHSHIVQD 70
Query: 100 VSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD 159
+++ + S S D T RLWD R F GH+ DV +V + +GS D
Sbjct: 71 CTLTADGAYAL-SASWDKTLRLWDVATGETYQR-FVGHKSDVXSVDIDKKASXIISGSRD 128
Query: 160 GTCRLFDIR-------TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVW 212
T +++ I+ GH V + NE S+ +G ++ W
Sbjct: 129 KTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG-------NDKXVKAW 181
Query: 213 DTLLAKVVLNLGSLQNS-----HEGRITCLGLSADGSALCTGSWDTNLKIWAFGGYR 264
NL Q H I L S DG+ + + D + +W +
Sbjct: 182 ---------NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKK 229
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 79/178 (44%), Gaps = 12/178 (6%)
Query: 28 SPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS--VF 85
S D G L GH+ + P+ HL+++S D T LWDI+ + V
Sbjct: 159 SKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVD 218
Query: 86 GGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV--ASRAVRTFHGHEGDVNT 143
+GHTA V VS + +F S + D +WDTR S+ + H +VN
Sbjct: 219 AKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNC 278
Query: 144 VKFFPDGN-RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEI------PHVTSIAFS 194
+ F P TGS D T L+D+R +L+++ + ++EI PH +I S
Sbjct: 279 LSFNPYSEFILATGSADKTVALWDLRNL-KLKLHSFESHKDEIFQVQWSPHNETILAS 335
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 4/85 (4%)
Query: 39 SRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVL 98
S + H V+C + P + L T S D+T LWD+ L+ + E H ++
Sbjct: 266 SHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL-RNLKLKLHSFE---SHKDEIF 321
Query: 99 SVSISGSNSRMFVSGSCDSTARLWD 123
V S N + S D +WD
Sbjct: 322 QVQWSPHNETILASSGTDRRLNVWD 346
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 91/229 (39%), Gaps = 19/229 (8%)
Query: 44 GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQS-----GHTADVL 98
H+G V+ +Y+P + T + +++D T GE GH +
Sbjct: 122 NHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGY 181
Query: 99 SVSISGSNSRMFVSGSCDSTARLWDTRVASR------AVRTFHGHEGDVNTVKF-FPDGN 151
+S + + S +S S D T LWD + A F GH V V + +
Sbjct: 182 GLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHES 241
Query: 152 RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFA-GYSNGDCY 210
FG+ +DD ++D R+ + + + V ++F+ + A G ++
Sbjct: 242 LFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTA--EVNCLSFNPYSEFILATGSADKTVA 299
Query: 211 VWDTLLAKVVLNLGSLQNSHEGRITCLGLSA-DGSALCTGSWDTNLKIW 258
+WD L + L L S + SH+ I + S + + L + D L +W
Sbjct: 300 LWD--LRNLKLKLHSFE-SHKDEIFQVQWSPHNETILASSGTDRRLNVW 345
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 54/131 (41%), Gaps = 18/131 (13%)
Query: 3 CAFSPTGQSV-ACGGLDSVCSIFNLNSPTDKDGNLPVS-RMLSGHKGYVSCCQYVPDEDT 60
+F+P + + A G D ++++L NL + HK + Q+ P +T
Sbjct: 279 LSFNPYSEFILATGSADKTVALWDLR-------NLKLKLHSFESHKDEIFQVQWSPHNET 331
Query: 61 HLITSSGDQTCVLWDITT-GLRTSVFGGE--------FQSGHTADVLSVSISGSNSRMFV 111
L +S D+ +WD++ G S E GHTA + S + + +
Sbjct: 332 ILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVIC 391
Query: 112 SGSCDSTARLW 122
S S D+ ++W
Sbjct: 392 SVSEDNIMQVW 402
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 86/184 (46%), Gaps = 12/184 (6%)
Query: 42 LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI--TTGLRTSVFGGEFQSGHTADVLS 99
L GH+ + P+ + +L+++S D T LWDI T + +GHTA V
Sbjct: 179 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 238
Query: 100 VSISGSNSRMFVSGSCDSTARLWDTR--VASRAVRTFHGHEGDVNTVKFFPDGN-RFGTG 156
V+ + +F S + D +WDTR S+ T H +VN + F P TG
Sbjct: 239 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 298
Query: 157 SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTL 215
S D T L+D+R +L+++ + ++EI + +S + A ++ +VWD
Sbjct: 299 SADKTVALWDLRNL-KLKLHSFESHKDEI---FQVQWSPHNETILASSGTDRRLHVWD-- 352
Query: 216 LAKV 219
L+K+
Sbjct: 353 LSKI 356
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/131 (20%), Positives = 57/131 (43%), Gaps = 2/131 (1%)
Query: 18 DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT 77
D ++++N+ + + + +GH V + ++ + + DQ ++WD
Sbjct: 205 DHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWD-- 262
Query: 78 TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH 137
T + HTA+V +S + + + +GS D T LWD R + +F H
Sbjct: 263 TRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESH 322
Query: 138 EGDVNTVKFFP 148
+ ++ V++ P
Sbjct: 323 KDEIFQVQWSP 333
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 91/229 (39%), Gaps = 19/229 (8%)
Query: 44 GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQS-----GHTADVL 98
H+G V+ +Y+P + T + +++D T GE Q GH +
Sbjct: 128 NHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGY 187
Query: 99 SVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRT------FHGHEGDVNTVKF-FPDGN 151
+S + + + +S S D T LWD + R F GH V V + +
Sbjct: 188 GLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES 247
Query: 152 RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFA-GYSNGDCY 210
FG+ +DD ++D R + + + V ++F+ + A G ++
Sbjct: 248 LFGSVADDQKLMIWDTRNNNTSKPSHTVDA--HTAEVNCLSFNPYSEFILATGSADKTVA 305
Query: 211 VWDTLLAKVVLNLGSLQNSHEGRITCLGLSA-DGSALCTGSWDTNLKIW 258
+WD L + L L S + SH+ I + S + + L + D L +W
Sbjct: 306 LWD--LRNLKLKLHSFE-SHKDEIFQVQWSPHNETILASSGTDRRLHVW 351
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 18/130 (13%)
Query: 4 AFSPTGQSV-ACGGLDSVCSIFNLNSPTDKDGNLPVS-RMLSGHKGYVSCCQYVPDEDTH 61
+F+P + + A G D ++++L NL + HK + Q+ P +T
Sbjct: 286 SFNPYSEFILATGSADKTVALWDLR-------NLKLKLHSFESHKDEIFQVQWSPHNETI 338
Query: 62 LITSSGDQTCVLWDITT-GLRTSVFGGE--------FQSGHTADVLSVSISGSNSRMFVS 112
L +S D+ +WD++ G S E GHTA + S + + + S
Sbjct: 339 LASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICS 398
Query: 113 GSCDSTARLW 122
S D+ ++W
Sbjct: 399 VSEDNIMQVW 408
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 86/184 (46%), Gaps = 12/184 (6%)
Query: 42 LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI--TTGLRTSVFGGEFQSGHTADVLS 99
L GH+ + P+ + +L+++S D T LWDI T + +GHTA V
Sbjct: 181 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 240
Query: 100 VSISGSNSRMFVSGSCDSTARLWDTR--VASRAVRTFHGHEGDVNTVKFFPDGN-RFGTG 156
V+ + +F S + D +WDTR S+ T H +VN + F P TG
Sbjct: 241 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 300
Query: 157 SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTL 215
S D T L+D+R +L+++ + ++EI + +S + A ++ +VWD
Sbjct: 301 SADKTVALWDLRNL-KLKLHSFESHKDEI---FQVQWSPHNETILASSGTDRRLHVWD-- 354
Query: 216 LAKV 219
L+K+
Sbjct: 355 LSKI 358
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/131 (20%), Positives = 57/131 (43%), Gaps = 2/131 (1%)
Query: 18 DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT 77
D ++++N+ + + + +GH V + ++ + + DQ ++WD
Sbjct: 207 DHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWD-- 264
Query: 78 TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH 137
T + HTA+V +S + + + +GS D T LWD R + +F H
Sbjct: 265 TRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESH 324
Query: 138 EGDVNTVKFFP 148
+ ++ V++ P
Sbjct: 325 KDEIFQVQWSP 335
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 92/229 (40%), Gaps = 19/229 (8%)
Query: 44 GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQS-----GHTADVL 98
H+G V+ +Y+P + T + +++D T GE Q GH +
Sbjct: 130 NHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGY 189
Query: 99 SVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRT------FHGHEGDVNTVKF-FPDGN 151
+S + + + +S S D T LWD + R F GH V V + +
Sbjct: 190 GLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES 249
Query: 152 RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFA-GYSNGDCY 210
FG+ +DD ++D R + + + + V ++F+ + A G ++
Sbjct: 250 LFGSVADDQKLMIWDTRNNNTSKPSHTV--DAHTAEVNCLSFNPYSEFILATGSADKTVA 307
Query: 211 VWDTLLAKVVLNLGSLQNSHEGRITCLGLSA-DGSALCTGSWDTNLKIW 258
+WD L + L L S + SH+ I + S + + L + D L +W
Sbjct: 308 LWD--LRNLKLKLHSFE-SHKDEIFQVQWSPHNETILASSGTDRRLHVW 353
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 18/130 (13%)
Query: 4 AFSPTGQSV-ACGGLDSVCSIFNLNSPTDKDGNLPVS-RMLSGHKGYVSCCQYVPDEDTH 61
+F+P + + A G D ++++L NL + HK + Q+ P +T
Sbjct: 288 SFNPYSEFILATGSADKTVALWDLR-------NLKLKLHSFESHKDEIFQVQWSPHNETI 340
Query: 62 LITSSGDQTCVLWDITT-GLRTSVFGGE--------FQSGHTADVLSVSISGSNSRMFVS 112
L +S D+ +WD++ G S E GHTA + S + + + S
Sbjct: 341 LASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICS 400
Query: 113 GSCDSTARLW 122
S D+ ++W
Sbjct: 401 VSEDNIMQVW 410
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 86/184 (46%), Gaps = 12/184 (6%)
Query: 42 LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI--TTGLRTSVFGGEFQSGHTADVLS 99
L GH+ + P+ + +L+++S D T LWDI T + +GHTA V
Sbjct: 177 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 236
Query: 100 VSISGSNSRMFVSGSCDSTARLWDTR--VASRAVRTFHGHEGDVNTVKFFPDGN-RFGTG 156
V+ + +F S + D +WDTR S+ T H +VN + F P TG
Sbjct: 237 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 296
Query: 157 SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTL 215
S D T L+D+R +L+++ + ++EI + +S + A ++ +VWD
Sbjct: 297 SADKTVALWDLRNL-KLKLHSFESHKDEI---FQVQWSPHNETILASSGTDRRLHVWD-- 350
Query: 216 LAKV 219
L+K+
Sbjct: 351 LSKI 354
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/131 (20%), Positives = 57/131 (43%), Gaps = 2/131 (1%)
Query: 18 DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT 77
D ++++N+ + + + +GH V + ++ + + DQ ++WD
Sbjct: 203 DHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWD-- 260
Query: 78 TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH 137
T + HTA+V +S + + + +GS D T LWD R + +F H
Sbjct: 261 TRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESH 320
Query: 138 EGDVNTVKFFP 148
+ ++ V++ P
Sbjct: 321 KDEIFQVQWSP 331
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 91/229 (39%), Gaps = 19/229 (8%)
Query: 44 GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQS-----GHTADVL 98
H+G V+ +Y+P + T + +++D T GE Q GH +
Sbjct: 126 NHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGY 185
Query: 99 SVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRT------FHGHEGDVNTVKF-FPDGN 151
+S + + + +S S D T LWD + R F GH V V + +
Sbjct: 186 GLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES 245
Query: 152 RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFA-GYSNGDCY 210
FG+ +DD ++D R + + + V ++F+ + A G ++
Sbjct: 246 LFGSVADDQKLMIWDTRNNNTSKPSHTVDA--HTAEVNCLSFNPYSEFILATGSADKTVA 303
Query: 211 VWDTLLAKVVLNLGSLQNSHEGRITCLGLSA-DGSALCTGSWDTNLKIW 258
+WD L + L L S + SH+ I + S + + L + D L +W
Sbjct: 304 LWD--LRNLKLKLHSFE-SHKDEIFQVQWSPHNETILASSGTDRRLHVW 349
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 18/130 (13%)
Query: 4 AFSPTGQSV-ACGGLDSVCSIFNLNSPTDKDGNLPVS-RMLSGHKGYVSCCQYVPDEDTH 61
+F+P + + A G D ++++L NL + HK + Q+ P +T
Sbjct: 284 SFNPYSEFILATGSADKTVALWDLR-------NLKLKLHSFESHKDEIFQVQWSPHNETI 336
Query: 62 LITSSGDQTCVLWDITT-GLRTSVFGGE--------FQSGHTADVLSVSISGSNSRMFVS 112
L +S D+ +WD++ G S E GHTA + S + + + S
Sbjct: 337 LASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICS 396
Query: 113 GSCDSTARLW 122
S D+ ++W
Sbjct: 397 VSEDNIMQVW 406
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 68/145 (46%), Gaps = 12/145 (8%)
Query: 61 HLITSSGDQTCVLWDITTGLRTS--VFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST 118
HL+++S D T LWDI G + V +GH+A V V+ + +F S + D
Sbjct: 194 HLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQK 253
Query: 119 ARLWDTR--VASRAVRTFHGHEGDVNTVKFFPDGN-RFGTGSDDGTCRLFDIRTGHQLQV 175
+WDTR S+ H +VN + F P TGS D T L+D+R +L++
Sbjct: 254 LMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL-KLKL 312
Query: 176 YYQQHGENEI------PHVTSIAFS 194
+ + ++EI PH +I S
Sbjct: 313 HTFESHKDEIFQVHWSPHNETILAS 337
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 69/160 (43%), Gaps = 5/160 (3%)
Query: 8 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG 67
+G ++ +VC ++++N+ + + + +GH V + ++ + +
Sbjct: 192 SGHLLSASDDHTVC-LWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVAD 250
Query: 68 DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA 127
DQ ++WD T T+ HTA+V +S + + + +GS D T LWD R
Sbjct: 251 DQKLMIWD--TRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 308
Query: 128 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDI 167
+ TF H+ ++ V + P S GT R ++
Sbjct: 309 KLKLHTFESHKDEIFQVHWSPHNETILASS--GTDRRLNV 346
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 54/236 (22%), Positives = 96/236 (40%), Gaps = 33/236 (13%)
Query: 44 GHKGYVSCCQYVPDEDTHLITSSGDQTCVL-WDITTGLRTSVFGGEFQS-----GHTADV 97
H+G V+ +Y+P ++ H+I + + VL +D T GE GH +
Sbjct: 124 NHEGEVNRARYMP-QNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEG 182
Query: 98 LSVSISGSNSRMFVSGSCDSTARLWDTRVASR------AVRTFHGHEGDVNTVKF-FPDG 150
+S + + S +S S D T LWD + A F GH V V +
Sbjct: 183 YGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHE 242
Query: 151 NRFGTGSDDGTCRLFDIRTG------HQLQVYYQQHGENEIPHVTSIAFSISGRLLFA-G 203
+ FG+ +DD ++D R+ H + + + V ++F+ + A G
Sbjct: 243 SLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAE--------VNCLSFNPYSEFILATG 294
Query: 204 YSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA-DGSALCTGSWDTNLKIW 258
++ +WD L + L L + + SH+ I + S + + L + D L +W
Sbjct: 295 SADKTVALWD--LRNLKLKLHTFE-SHKDEIFQVHWSPHNETILASSGTDRRLNVW 347
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 53/130 (40%), Gaps = 18/130 (13%)
Query: 4 AFSPTGQSV-ACGGLDSVCSIFNLNSPTDKDGNLPVS-RMLSGHKGYVSCCQYVPDEDTH 61
+F+P + + A G D ++++L NL + HK + + P +T
Sbjct: 282 SFNPYSEFILATGSADKTVALWDLR-------NLKLKLHTFESHKDEIFQVHWSPHNETI 334
Query: 62 LITSSGDQTCVLWDITT-GLRTSVFGGE--------FQSGHTADVLSVSISGSNSRMFVS 112
L +S D+ +WD++ G S E GHTA + S + + + S
Sbjct: 335 LASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICS 394
Query: 113 GSCDSTARLW 122
S D+ ++W
Sbjct: 395 VSEDNIMQIW 404
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 61/139 (43%), Gaps = 17/139 (12%)
Query: 61 HLITSSGDQTCVLWDITTGLRTS--VFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST 118
HL+++S D T LWDI G + V +GH+A V V+ + +F S + D
Sbjct: 194 HLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQK 253
Query: 119 ARLWDTR--VASRAVRTFHGHEGDVNTVKFFPDGN-RFGTGSDDGTCRLFDIRT------ 169
+WDTR S+ H +VN + F P TGS D T L+D+R
Sbjct: 254 LXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 313
Query: 170 ---GHQ---LQVYYQQHGE 182
H+ QV++ H E
Sbjct: 314 TFESHKDEIFQVHWSPHNE 332
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 68/160 (42%), Gaps = 5/160 (3%)
Query: 8 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG 67
+G ++ +VC ++++N+ + + + +GH V + ++ + +
Sbjct: 192 SGHLLSASDDHTVC-LWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVAD 250
Query: 68 DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA 127
DQ +WD T T+ HTA+V +S + + + +GS D T LWD R
Sbjct: 251 DQKLXIWD--TRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 308
Query: 128 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDI 167
+ TF H+ ++ V + P S GT R ++
Sbjct: 309 KLKLHTFESHKDEIFQVHWSPHNETILASS--GTDRRLNV 346
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 53/130 (40%), Gaps = 18/130 (13%)
Query: 4 AFSPTGQSV-ACGGLDSVCSIFNLNSPTDKDGNLPVS-RMLSGHKGYVSCCQYVPDEDTH 61
+F+P + + A G D ++++L NL + HK + + P +T
Sbjct: 282 SFNPYSEFILATGSADKTVALWDLR-------NLKLKLHTFESHKDEIFQVHWSPHNETI 334
Query: 62 LITSSGDQTCVLWDITT-GLRTSVFGGE--------FQSGHTADVLSVSISGSNSRMFVS 112
L +S D+ +WD++ G S E GHTA + S + + + S
Sbjct: 335 LASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICS 394
Query: 113 GSCDSTARLW 122
S D+ ++W
Sbjct: 395 VSEDNIXQIW 404
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 73/168 (43%), Gaps = 11/168 (6%)
Query: 91 SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG 150
GH V+SV IS + + S S D+ RLWD + +++ D T+ F PD
Sbjct: 77 EGHQLGVVSVDISHT-LPIAASSSLDAHIRLWDLE-NGKQIKSIDAGPVDAWTLAFSPDS 134
Query: 151 NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCY 210
TG+ G +F + +G + + + + SIA+S G+ L +G +G
Sbjct: 135 QYLATGTHVGKVNIFGVESGKK-----EYSLDTRGKFILSIAYSPDGKYLASGAIDGIIN 189
Query: 211 VWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 258
++D K++ L H I L S D L T S D +KI+
Sbjct: 190 IFDIATGKLLHTL----EGHAMPIRSLTFSPDSQLLVTASDDGYIKIY 233
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 85/167 (50%), Gaps = 17/167 (10%)
Query: 1 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDT 60
++ A+SP G+ +A G +D + +IF++ + G L L GH + + PD
Sbjct: 168 LSIAYSPDGKYLASGAIDGIINIFDIAT-----GKL--LHTLEGHAMPIRSLTFSPDSQL 220
Query: 61 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 120
L+T+S D ++D+ + + G SGH + VL+V+ ++ FVS S D + +
Sbjct: 221 -LVTASDDGYIKIYDV----QHANLAGTL-SGHASWVLNVAFCPDDTH-FVSSSSDKSVK 273
Query: 121 LWDTRVASRA-VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFD 166
+WD V +R V TF H+ V VK+ +G++ + DD ++D
Sbjct: 274 VWD--VGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 79/183 (43%), Gaps = 23/183 (12%)
Query: 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTH 61
T AFSP Q +A G +IF + S + L ++ Y PD +
Sbjct: 127 TLAFSPDSQYLATGTHVGKVNIFGVESGKKE-------YSLDTRGKFILSIAYSPD-GKY 178
Query: 62 LITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARL 121
L + + D ++DI TG GH + S++ S +S++ V+ S D ++
Sbjct: 179 LASGAIDGIINIFDIATGKLLHTL-----EGHAMPIRSLTFS-PDSQLLVTASDDGYIKI 232
Query: 122 WDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT--------GHQL 173
+D + A+ A T GH V V F PD F + S D + +++D+ T HQ
Sbjct: 233 YDVQHANLA-GTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQD 291
Query: 174 QVY 176
QV+
Sbjct: 292 QVW 294
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 88/216 (40%), Gaps = 30/216 (13%)
Query: 10 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK-GYVSCCQYVPDEDTHLI----T 64
++V G LD + ++ +D L + L GH+ G VS + +H + +
Sbjct: 49 ETVVTGSLDDLVKVWKW-----RDERLDLQWSLEGHQLGVVSV------DISHTLPIAAS 97
Query: 65 SSGDQTCVLWDITTGLR-TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWD 123
SS D LWD+ G + S+ G D +++ S +S+ +G+ ++
Sbjct: 98 SSLDAHIRLWDLENGKQIKSIDAGP------VDAWTLAFS-PDSQYLATGTHVGKVNIFG 150
Query: 124 TRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGEN 183
+ + + + ++ + PDG +G+ DG +FDI TG L E
Sbjct: 151 VE-SGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTL-----EG 204
Query: 184 EIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV 219
+ S+ FS +LL +G ++D A +
Sbjct: 205 HAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANL 240
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 95/240 (39%), Gaps = 25/240 (10%)
Query: 3 CAFSPTGQSVAC---GGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDED 59
CA +P ++ C GG + L D N+P ++ GH V + P D
Sbjct: 40 CAVNPKFMALICEASGG--GAFLVLPLGKTGRVDKNVP---LVCGHTAPVLDIAWCPHND 94
Query: 60 THLITSSGDQTCVLWDITTG-----LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS 114
+ + S D T ++W+I G LR V E GHT V V+ + + +S
Sbjct: 95 NVIASGSEDCTVMVWEIPDGGLVLPLREPVITLE---GHTKRVGIVAWHPTAQNVLLSAG 151
Query: 115 CDSTARLWDTRVASRAVRTFHG--HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ 172
CD+ +WD + AV T H + +V + DG T D R+ + R G
Sbjct: 152 CDNVILVWDVGTGA-AVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKG-- 208
Query: 173 LQVYYQQHGENEIPHVTSIAFSISGRLLFAGY---SNGDCYVWDTLLAKVVLNLGSLQNS 229
V ++ +E F G++L G+ S +WDT + L+L L S
Sbjct: 209 -TVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTS 267
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 53/172 (30%), Gaps = 54/172 (31%)
Query: 92 GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTR------VASRAVRTFHGHEGDVNTVK 145
GHTA VL ++ N + SGS D T +W+ V T GH V V
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 146 FFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS 205
+ P LL AG
Sbjct: 139 WHPTAQNV---------------------------------------------LLSAGCD 153
Query: 206 NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKI 257
N VWD VL LG + H I + S DG+ +CT D +++
Sbjct: 154 NV-ILVWDVGTGAAVLTLGP--DVHPDTIYSVDWSRDGALICTSCRDKRVRV 202
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 84/191 (43%), Gaps = 16/191 (8%)
Query: 22 SIFNLNSPTDKDGNLPVSRM-LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL 80
+++++ P +K PVS++ Y+ C+ +PD T LI T +WD+
Sbjct: 75 KVWDISHPGNKS---PVSQLDCLNRDNYIRSCKLLPDGCT-LIVGGEASTLSIWDLAA-- 128
Query: 81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGD 140
T E S A +++IS +S++ S D +WD + VR F GH
Sbjct: 129 PTPRIKAELTSSAPA-CYALAIS-PDSKVCFSCCSDGNIAVWDLHNQT-LVRQFQGHTDG 185
Query: 141 VNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLL 200
+ + DG + TG D T R +D+R G QL QQH + + S+ + +G L
Sbjct: 186 ASCIDISNDGTKLWTGGLDNTVRSWDLREGRQL----QQH--DFTSQIFSLGYCPTGEWL 239
Query: 201 FAGYSNGDCYV 211
G + + V
Sbjct: 240 AVGMESSNVEV 250
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/257 (19%), Positives = 94/257 (36%), Gaps = 25/257 (9%)
Query: 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTH 61
+C P G ++ GG S SI++L +PT + + L+ PD
Sbjct: 102 SCKLLPDGCTLIVGGEASTLSIWDLAAPTPR-----IKAELTSSAPACYALAISPDSKV- 155
Query: 62 LITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARL 121
+ D +WD L +FQ GHT + IS ++++ +G D+T R
Sbjct: 156 CFSCCSDGNIAVWD----LHNQTLVRQFQ-GHTDGASCIDISNDGTKLW-TGGLDNTVRS 209
Query: 122 WDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG 181
WD R + + H + ++ + P G G + + + + Q++ +
Sbjct: 210 WDLREGRQLQQ--HDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESC 267
Query: 182 ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA 241
V S+ F+ G+ + + W T + Q+ + +S
Sbjct: 268 ------VLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI-----FQSKESSSVLSCDISV 316
Query: 242 DGSALCTGSWDTNLKIW 258
D + TGS D ++
Sbjct: 317 DDKYIVTGSGDKKATVY 333
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/178 (20%), Positives = 67/178 (37%), Gaps = 13/178 (7%)
Query: 93 HTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH----GHEGDVNTVKFFP 148
H V +V+IS ++ G ++WD + + + K P
Sbjct: 50 HGEVVCAVTISNPTRHVYTGGK--GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP 107
Query: 149 DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGD 208
DG G + T ++D+ + + P ++A S ++ F+ S+G+
Sbjct: 108 DGCTLIVGGEASTLSIWDLAAP---TPRIKAELTSSAPACYALAISPDSKVCFSCCSDGN 164
Query: 209 CYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGYRRV 266
VWD +V H +C+ +S DG+ L TG D ++ W R++
Sbjct: 165 IAVWDLHNQTLVRQF----QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQL 218
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 66/163 (40%), Gaps = 10/163 (6%)
Query: 4 AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLI 63
A+SP G +A D+ I+ N + L GH+ V + P + L
Sbjct: 68 AWSPCGNYLASASFDATTCIWKKNQ-----DDFECVTTLEGHENEVKSVAWAPSGNL-LA 121
Query: 64 TSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWD 123
T S D++ +W++ + HT DV V + + + S S D T +L+
Sbjct: 122 TCSRDKSVWVWEVDEEDEYECVS--VLNSHTQDVKHV-VWHPSQELLASASYDDTVKLYR 178
Query: 124 TRVASRAV-RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLF 165
T GHE V ++ F P G R + SDD T R++
Sbjct: 179 EEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 67/171 (39%), Gaps = 6/171 (3%)
Query: 89 FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS-RAVRTFHGHEGDVNTVKFF 147
GH V V+ S + + S S D+T +W V T GHE +V +V +
Sbjct: 56 LSEGHQRTVRKVAWSPCGNYL-ASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWA 114
Query: 148 PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG 207
P GN T S D + ++++ + + + + V + + S LL + +
Sbjct: 115 PSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQ--DVKHVVWHPSQELLASASYDD 172
Query: 208 DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 258
++ V +L+ HE + L G L + S D ++IW
Sbjct: 173 TVKLYREEEDDWVC-CATLEG-HESTVWSLAFDPSGQRLASCSDDRTVRIW 221
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 89/217 (41%), Gaps = 21/217 (9%)
Query: 12 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTC 71
+ G D +FN N+ G V H Y+ P + ++++ S D T
Sbjct: 70 IIVGSDDFRIRVFNYNT-----GEKVVD--FEAHPDYIRSIAVHPTK-PYVLSGSDDLTV 121
Query: 72 VLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV 131
LW+ F+ GH V+ V+ + + F SG D T ++W ++
Sbjct: 122 KLWNWENNW---ALEQTFE-GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF 177
Query: 132 RTFHGHEGDVNTVKFF--PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVT 189
G E VN V ++ PD T SDD T +++D +T + E + +V+
Sbjct: 178 TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL-----EGHMSNVS 232
Query: 190 SIAFSISGRLLFAGYSNGDCYVWDTLLAKV--VLNLG 224
F + ++ +G +G +W++ KV LN+G
Sbjct: 233 FAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 71/166 (42%), Gaps = 12/166 (7%)
Query: 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTH 61
+ A PT V G D ++N + N + + GH+ +V C + P + +
Sbjct: 102 SIAVHPTKPYVLSGSDDLTVKLWNW------ENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 62 LITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMF-VSGSCDSTAR 120
+ D+T +W + G T F +G V V + + ++ S D T +
Sbjct: 156 FASGCLDRTVKVWSL--GQSTPNFT--LTTGQERGVNYVDYYPLPDKPYMITASDDLTIK 211
Query: 121 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFD 166
+WD + S V T GH +V+ F P +GS+DGT ++++
Sbjct: 212 IWDYQTKS-CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 63/147 (42%), Gaps = 16/147 (10%)
Query: 119 ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQ 178
LW+ VR+ E V KF N GSDD R+F+ TG ++ V ++
Sbjct: 37 VELWNYETQVE-VRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKV-VDFE 94
Query: 179 QHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGR---IT 235
H + ++ SIA + + +G + +W+ N +L+ + EG +
Sbjct: 95 AHPD----YIRSIAVHPTKPYVLSGSDDLTVKLWNW------ENNWALEQTFEGHEHFVM 144
Query: 236 CLGLSA-DGSALCTGSWDTNLKIWAFG 261
C+ + D S +G D +K+W+ G
Sbjct: 145 CVAFNPKDPSTFASGCLDRTVKVWSLG 171
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 89/217 (41%), Gaps = 21/217 (9%)
Query: 12 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTC 71
+ G D +FN N+ G V H Y+ P + ++++ S D T
Sbjct: 70 IIVGSDDFRIRVFNYNT-----GEKVVD--FEAHPDYIRSIAVHPTK-PYVLSGSDDLTV 121
Query: 72 VLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV 131
LW+ F+ GH V+ V+ + + F SG D T ++W ++
Sbjct: 122 KLWNWENNW---ALEQTFE-GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF 177
Query: 132 RTFHGHEGDVNTVKFF--PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVT 189
G E VN V ++ PD T SDD T +++D +T + E + +V+
Sbjct: 178 TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL-----EGHMSNVS 232
Query: 190 SIAFSISGRLLFAGYSNGDCYVWDTLLAKV--VLNLG 224
F + ++ +G +G +W++ KV LN+G
Sbjct: 233 FAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 71/166 (42%), Gaps = 12/166 (7%)
Query: 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTH 61
+ A PT V G D ++N + N + + GH+ +V C + P + +
Sbjct: 102 SIAVHPTKPYVLSGSDDLTVKLWNW------ENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 62 LITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMF-VSGSCDSTAR 120
+ D+T +W + G T F +G V V + + ++ S D T +
Sbjct: 156 FASGCLDRTVKVWSL--GQSTPNFT--LTTGQERGVNYVDYYPLPDKPYMITASDDLTIK 211
Query: 121 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFD 166
+WD + S V T GH +V+ F P +GS+DGT ++++
Sbjct: 212 IWDYQTKS-CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 63/147 (42%), Gaps = 16/147 (10%)
Query: 119 ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQ 178
LW+ VR+ E V KF N GSDD R+F+ TG ++ V ++
Sbjct: 37 VELWNYETQVE-VRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKV-VDFE 94
Query: 179 QHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGR---IT 235
H + ++ SIA + + +G + +W+ N +L+ + EG +
Sbjct: 95 AHPD----YIRSIAVHPTKPYVLSGSDDLTVKLWNW------ENNWALEQTFEGHEHFVM 144
Query: 236 CLGLSA-DGSALCTGSWDTNLKIWAFG 261
C+ + D S +G D +K+W+ G
Sbjct: 145 CVAFNPKDPSTFASGCLDRTVKVWSLG 171
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 88/217 (40%), Gaps = 21/217 (9%)
Query: 12 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTC 71
+ G D +FN N+ G V H Y+ P + ++++ S D T
Sbjct: 70 IIVGSDDFRIRVFNYNT-----GEKVVD--FEAHPDYIRSIAVHPTK-PYVLSGSDDLTV 121
Query: 72 VLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV 131
LW+ + GH V+ V+ + + F SG D T ++W ++
Sbjct: 122 KLWNWENNWALE----QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF 177
Query: 132 RTFHGHEGDVNTVKFF--PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVT 189
G E VN V ++ PD T SDD T +++D +T + E + +V+
Sbjct: 178 TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL-----EGHMSNVS 232
Query: 190 SIAFSISGRLLFAGYSNGDCYVWDTLLAKV--VLNLG 224
F + ++ +G +G +W++ KV LN+G
Sbjct: 233 FAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 72/169 (42%), Gaps = 12/169 (7%)
Query: 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTH 61
+ A PT V G D ++N + N + + GH+ +V C + P + +
Sbjct: 102 SIAVHPTKPYVLSGSDDLTVKLWNW------ENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 62 LITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMF-VSGSCDSTAR 120
+ D+T +W + G T F +G V V + + ++ S D T +
Sbjct: 156 FASGCLDRTVKVWSL--GQSTPNF--TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIK 211
Query: 121 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT 169
+WD + S V T GH +V+ F P +GS+DGT ++++ T
Sbjct: 212 IWDYQTKS-CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 63/147 (42%), Gaps = 16/147 (10%)
Query: 119 ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQ 178
LW+ VR+ E V KF N GSDD R+F+ TG ++ V ++
Sbjct: 37 VELWNYETQVE-VRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKV-VDFE 94
Query: 179 QHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGR---IT 235
H + ++ SIA + + +G + +W+ N +L+ + EG +
Sbjct: 95 AHPD----YIRSIAVHPTKPYVLSGSDDLTVKLWNW------ENNWALEQTFEGHEHFVM 144
Query: 236 CLGLSA-DGSALCTGSWDTNLKIWAFG 261
C+ + D S +G D +K+W+ G
Sbjct: 145 CVAFNPKDPSTFASGCLDRTVKVWSLG 171
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 81/217 (37%), Gaps = 37/217 (17%)
Query: 42 LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS 101
LSGH G V +Y L++ S D+T +WDI G T VF G + D+
Sbjct: 158 LSGHDGGVWALKYA--HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDI---- 211
Query: 102 ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT 161
+ N + V+GS D+T +W ++ + HG E D V P+ N + G G
Sbjct: 212 VEYKNIKYIVTGSRDNTLHVW--KLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH 269
Query: 162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVL 221
+GH G ++ +G + VWD K +
Sbjct: 270 MASVRTVSGH-------------------------GNIVVSGSYDNTLIVWDVAQMKCLY 304
Query: 222 NLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 258
L + H RI + + S DT ++IW
Sbjct: 305 IL----SGHTDRIYSTIYDHERKRCISASMDTTIRIW 337
Score = 35.0 bits (79), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 11/122 (9%)
Query: 46 KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS 105
+G+++ + V +++ S D T ++WD+ + SGHT + S +I
Sbjct: 267 RGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYIL-----SGHTDRIYS-TIYDH 320
Query: 106 NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRF-GTGSDDGTCRL 164
+ +S S D+T R+WD + T GH V ++ ++F + + DG+ R
Sbjct: 321 ERKRCISASMDTTIRIWDLE-NGELMYTLQGHTALVGLLRL---SDKFLVSAAADGSIRG 376
Query: 165 FD 166
+D
Sbjct: 377 WD 378
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 92/257 (35%), Gaps = 60/257 (23%)
Query: 48 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS 107
Y+S ++ E +L + LWD+ R + H+A V S+S NS
Sbjct: 160 YISSVAWI-KEGNYLAVGTSSAEVQLWDVQQQKRLRNM-----TSHSARVGSLSW---NS 210
Query: 108 RMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDI 167
+ SGS D RVA V T GH +V +++ PDG +G +D ++
Sbjct: 211 YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS 270
Query: 168 RTGH----QLQVYYQQHGENEI-------------------------------------- 185
G LQ + Q G +
Sbjct: 271 APGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA 330
Query: 186 -PHVTSIAFSISGRLLFA--GYSNGDCYVWD-TLLAKVVLNLGSLQNSHEGRITCLGLSA 241
V SI +S + L + G++ +W +AKV G H R+ L +S
Sbjct: 331 HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG-----HTSRVLSLTMSP 385
Query: 242 DGSALCTGSWDTNLKIW 258
DG+ + + + D L++W
Sbjct: 386 DGATVASAAADETLRLW 402
Score = 31.2 bits (69), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 9/80 (11%)
Query: 159 DGTCRLFDIRTGHQLQVY-YQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA 217
D + L+ +G LQ+ +Q GE +++S+A+ G L G S+ + +WD
Sbjct: 135 DNSVYLWSASSGDILQLLQMEQPGE----YISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ 190
Query: 218 KVVLNLGSLQNSHEGRITCL 237
K + N+ SH R+ L
Sbjct: 191 KRLRNM----TSHSARVGSL 206
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 92/257 (35%), Gaps = 60/257 (23%)
Query: 48 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS 107
Y+S ++ E +L + LWD+ R + H+A V S+S NS
Sbjct: 149 YISSVAWI-KEGNYLAVGTSSAEVQLWDVQQQKRLRNM-----TSHSARVGSLSW---NS 199
Query: 108 RMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDI 167
+ SGS D RVA V T GH +V +++ PDG +G +D ++
Sbjct: 200 YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS 259
Query: 168 RTGH----QLQVYYQQHGENEI-------------------------------------- 185
G LQ + Q G +
Sbjct: 260 APGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA 319
Query: 186 -PHVTSIAFSISGRLLFA--GYSNGDCYVWD-TLLAKVVLNLGSLQNSHEGRITCLGLSA 241
V SI +S + L + G++ +W +AKV G H R+ L +S
Sbjct: 320 HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG-----HTSRVLSLTMSP 374
Query: 242 DGSALCTGSWDTNLKIW 258
DG+ + + + D L++W
Sbjct: 375 DGATVASAAADETLRLW 391
Score = 30.8 bits (68), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 9/80 (11%)
Query: 159 DGTCRLFDIRTGHQLQVY-YQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA 217
D + L+ +G LQ+ +Q GE +++S+A+ G L G S+ + +WD
Sbjct: 124 DNSVYLWSASSGDILQLLQMEQPGE----YISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ 179
Query: 218 KVVLNLGSLQNSHEGRITCL 237
K + N+ SH R+ L
Sbjct: 180 KRLRNM----TSHSARVGSL 195
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 48.5 bits (114), Expect = 4e-06, Method: Composition-based stats.
Identities = 43/187 (22%), Positives = 78/187 (41%), Gaps = 14/187 (7%)
Query: 42 LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS 101
H Y+ P + ++++ S D T LW+ + GH V+ V+
Sbjct: 93 FEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWALE----QTFEGHEHFVMCVA 147
Query: 102 ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFF--PDGNRFGTGSDD 159
+ + F SG D T ++W ++ G E VN V ++ PD T SDD
Sbjct: 148 FNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD 207
Query: 160 GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV 219
T +++D +T + E + +V+ F + ++ +G +G +W++ KV
Sbjct: 208 LTIKIWDYQTKSCVATL-----EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262
Query: 220 --VLNLG 224
LN+G
Sbjct: 263 EKTLNVG 269
Score = 47.4 bits (111), Expect = 9e-06, Method: Composition-based stats.
Identities = 41/169 (24%), Positives = 72/169 (42%), Gaps = 12/169 (7%)
Query: 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTH 61
+ A PT V G D ++N + N + + GH+ +V C + P + +
Sbjct: 102 SIAVHPTKPYVLSGSDDLTVKLWNW------ENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 62 LITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMF-VSGSCDSTAR 120
+ D+T +W + G T F +G V V + + ++ S D T +
Sbjct: 156 FASGCLDRTVKVWSL--GQSTPNF--TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIK 211
Query: 121 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT 169
+WD + S V T GH +V+ F P +GS+DGT ++++ T
Sbjct: 212 IWDYQTKS-CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259
Score = 39.3 bits (90), Expect = 0.002, Method: Composition-based stats.
Identities = 34/135 (25%), Positives = 60/135 (44%), Gaps = 15/135 (11%)
Query: 131 VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTS 190
VR+ E V KF N GSDD R+F+ TG ++ V ++ H + ++ S
Sbjct: 48 VRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKV-VDFEAHPD----YIRS 102
Query: 191 IAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGR---ITCLGLS-ADGSAL 246
IA + + +G + +W+ N +L+ + EG + C+ + D S
Sbjct: 103 IAVHPTKPYVLSGSDDLTVKLWNW------ENNWALEQTFEGHEHFVMCVAFNPKDPSTF 156
Query: 247 CTGSWDTNLKIWAFG 261
+G D +K+W+ G
Sbjct: 157 ASGCLDRTVKVWSLG 171
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 81/217 (37%), Gaps = 37/217 (17%)
Query: 42 LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS 101
LSGH G V +Y L++ S D+T +WDI G T VF G + D+
Sbjct: 158 LSGHDGGVWALKYA--HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDI---- 211
Query: 102 ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT 161
+ N + V+GS D+T +W ++ + HG E D V P+ N + G G
Sbjct: 212 VEYKNIKYIVTGSRDNTLHVW--KLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH 269
Query: 162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVL 221
+GH G ++ +G + VWD K +
Sbjct: 270 XASVRTVSGH-------------------------GNIVVSGSYDNTLIVWDVAQXKCLY 304
Query: 222 NLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 258
L + H RI + + S DT ++IW
Sbjct: 305 IL----SGHTDRIYSTIYDHERKRCISASXDTTIRIW 337
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 54/122 (44%), Gaps = 11/122 (9%)
Query: 46 KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS 105
+G+ + + V +++ S D T ++WD+ + SGHT + S +I
Sbjct: 267 RGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYIL-----SGHTDRIYS-TIYDH 320
Query: 106 NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRF-GTGSDDGTCRL 164
+ +S S D+T R+WD T GH V ++ ++F + + DG+ R
Sbjct: 321 ERKRCISASXDTTIRIWDLE-NGELXYTLQGHTALVGLLRL---SDKFLVSAAADGSIRG 376
Query: 165 FD 166
+D
Sbjct: 377 WD 378
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 83/207 (40%), Gaps = 20/207 (9%)
Query: 33 DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG-----LRTSVFGG 87
D N+P ++ GH V + P D + + S D T ++W+I G LR V
Sbjct: 71 DKNVP---LVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITL 127
Query: 88 EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG--HEGDVNTVK 145
E GHT V V+ + + +S D+ +WD + AV T H + +V
Sbjct: 128 E---GHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGA-AVLTLGPDVHPDTIYSVD 183
Query: 146 FFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY- 204
+ DG T D R+ + R G V ++ +E F G++L G+
Sbjct: 184 WSRDGALICTSCRDKRVRVIEPRKG---TVVAEKDRPHEGTRPVHAVFVSEGKILTTGFS 240
Query: 205 --SNGDCYVWDTLLAKVVLNLGSLQNS 229
S +WDT + L+L L S
Sbjct: 241 RMSERQVALWDTKHLEEPLSLQELDTS 267
Score = 34.3 bits (77), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 53/172 (30%), Gaps = 54/172 (31%)
Query: 92 GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTR------VASRAVRTFHGHEGDVNTVK 145
GHTA VL ++ N + SGS D T +W+ V T GH V V
Sbjct: 79 GHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 146 FFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS 205
+ P LL AG
Sbjct: 139 WHPTAQNV---------------------------------------------LLSAGXD 153
Query: 206 NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKI 257
N VWD VL LG + H I + S DG+ +CT D +++
Sbjct: 154 NV-ILVWDVGTGAAVLTLGP--DVHPDTIYSVDWSRDGALICTSCRDKRVRV 202
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 73/193 (37%), Gaps = 26/193 (13%)
Query: 1 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNL--PVSR---MLSGHKGYVSCCQYV 55
+ A+ P +V G + C++ P DG L P+ L GH V +
Sbjct: 85 LDIAWXPHNDNVIASGSED-CTVMVWEIP---DGGLVLPLREPVITLEGHTKRVGIVAWH 140
Query: 56 PDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC 115
P L+++ D ++WD+ TG G + H + SV S + + SC
Sbjct: 141 PTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDV---HPDTIYSVDWSRDGA--LICTSC 195
Query: 116 -DSTARLWDTRVASRAVRTFHGHEG--DVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ 172
D R+ + R + HEG V+ V F +G TG F + Q
Sbjct: 196 RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAV-FVSEGKILTTG--------FSRMSERQ 246
Query: 173 LQVYYQQHGENEI 185
+ ++ +H E +
Sbjct: 247 VALWDTKHLEEPL 259
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 92/257 (35%), Gaps = 60/257 (23%)
Query: 48 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNS 107
Y+S ++ E +L + LWD+ R + H+A V S+S NS
Sbjct: 69 YISSVAWI-KEGNYLAVGTSSAEVQLWDVQQQKRL-----RNMTSHSARVGSLSW---NS 119
Query: 108 RMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDI 167
+ SGS D RVA V T GH +V +++ PDG +G +D ++
Sbjct: 120 YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS 179
Query: 168 RTGH----QLQVYYQQHGENEI-------------------------------------- 185
G LQ + Q G +
Sbjct: 180 APGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA 239
Query: 186 -PHVTSIAFSISGRLLFA--GYSNGDCYVWD-TLLAKVVLNLGSLQNSHEGRITCLGLSA 241
V SI +S + L + G++ +W +AKV G H R+ L +S
Sbjct: 240 HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG-----HTSRVLSLTMSP 294
Query: 242 DGSALCTGSWDTNLKIW 258
DG+ + + + D L++W
Sbjct: 295 DGATVASAAADETLRLW 311
Score = 30.4 bits (67), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 9/80 (11%)
Query: 159 DGTCRLFDIRTGHQLQVY-YQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA 217
D + L+ +G LQ+ +Q GE +++S+A+ G L G S+ + +WD
Sbjct: 44 DNSVYLWSASSGDILQLLQMEQPGE----YISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ 99
Query: 218 KVVLNLGSLQNSHEGRITCL 237
K + N+ SH R+ L
Sbjct: 100 KRLRNM----TSHSARVGSL 115
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 13/135 (9%)
Query: 42 LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS 101
L GH+G V + +D +I+ S D+T +W + Q+ H A V
Sbjct: 100 LIGHQGNVCSLSF---QDGVVISGSWDKTAKVW------KEGSLVYNLQA-HNASVWDAK 149
Query: 102 ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT 161
+ + F++ S D T +LW + ++TF G DV D F + S+DG
Sbjct: 150 VVSFSENKFLTASADKTIKLWQN---DKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGL 206
Query: 162 CRLFDIRTGHQLQVY 176
+L D TG L+ Y
Sbjct: 207 IKLVDXHTGDVLRTY 221
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 71/174 (40%), Gaps = 19/174 (10%)
Query: 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTH 61
C+ S V G D ++ K+G+L + L H V + V +
Sbjct: 107 VCSLSFQDGVVISGSWDKTAKVW-------KEGSLVYN--LQAHNASVWDAKVVSFSENK 157
Query: 62 LITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARL 121
+T+S D+T LW ++T F H V +++ + F+S S D +L
Sbjct: 158 FLTASADKTIKLWQNDKVIKT------FSGIHNDVVRHLAVV--DDGHFISCSNDGLIKL 209
Query: 122 WDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQV 175
D +RT+ GHE V +K P+G+ G +D T R++ G QV
Sbjct: 210 VDXHTGD-VLRTYEGHESFVYCIKLLPNGDIVSCG-EDRTVRIWSKENGSLKQV 261
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/274 (21%), Positives = 99/274 (36%), Gaps = 54/274 (19%)
Query: 45 HKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE---------------- 88
H+ V Q+ P + +SS D+T +WD T VF E
Sbjct: 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHC 157
Query: 89 -----------------------FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTR 125
GH ++L+VS S + + S DS +LWD R
Sbjct: 158 LVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVR 217
Query: 126 VASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTC------RLFDIRTGHQLQVYYQQ 179
AS + T H G + + N G +G C L + T ++++++
Sbjct: 218 RASGCLITLDQHNGKKS--QAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSS 275
Query: 180 HGENEIPHVTSIAFSISGRLLFA---GYSNGDCYV-WDTLLAKVVLNLG---SLQNSHEG 232
+GEN + + + + L F G S+ +V + + +A + G ++ H
Sbjct: 276 NGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYK 335
Query: 233 RITCLGLSADGSALCTGSWDTNLKIWAFGGYRRV 266
+ C ++ L +GS D N+ W Y V
Sbjct: 336 TVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPV 369
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/270 (22%), Positives = 102/270 (37%), Gaps = 48/270 (17%)
Query: 18 DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT 77
+S + L D+D V R+ H G ++ P E ++++ D VL+D+
Sbjct: 22 ESTRRVLGLELNKDRD----VERI---HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLE 74
Query: 78 TGLRTSVF--------GGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR 129
R S + G + H V +V ++ MF S S D T ++WDT
Sbjct: 75 NSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQT 134
Query: 130 AVRTFHGHEGDVNTVKFFPDGNR---FGTGSDDGTCRLFDIRTG---HQLQVYYQQHGEN 183
A E V + P + G+ +L D+++G H LQ + Q+
Sbjct: 135 A--DVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQE---- 188
Query: 184 EIPHVTSIAFSISGR---LLFAGYSNGDCYVWDTLLA------------KVVLNLGSLQN 228
+A S S R +L ++ +WD A K + S
Sbjct: 189 ------ILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANT 242
Query: 229 SHEGRITCLGLSADGSALCTGSWDTNLKIW 258
+H G++ L ++DG L T D +++W
Sbjct: 243 AHNGKVNGLCFTSDGLHLLTVGTDNRMRLW 272
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 91/220 (41%), Gaps = 13/220 (5%)
Query: 45 HKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE--FQSGHTADVLSVSI 102
H +V +Y PD + ++ GD T VL++ G +T VF + H+ V ++
Sbjct: 189 HTKFVHSVRYNPD-GSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTW 247
Query: 103 SGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTC 162
S +++ S S D T ++W+ G + + + S +G
Sbjct: 248 SPDGTKI-ASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFI 306
Query: 163 RLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLN 222
+ G QV Y G N+ +T+++ S G+ LF+ + G WD ++
Sbjct: 307 NFVNPELGSIDQVRY---GHNKA--ITALSSSADGKTLFSADAEGHINSWDISTG---IS 358
Query: 223 LGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 262
+ H IT + ++ G L T SWD +LK+ GG
Sbjct: 359 NRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKVVPAGG 397
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 59/127 (46%), Gaps = 9/127 (7%)
Query: 136 GHEGDVNTVKFFPDGN-RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFS 194
G +N+V F P R +GSDD T +F+ + + + +H + V S+ ++
Sbjct: 145 GQARAMNSVDFKPSRPFRIISGSDDNTVAIFE-GPPFKFKSTFGEHTK----FVHSVRYN 199
Query: 195 ISGRLLFAGYSNGDCYVWDTL--LAKVVLNLGSLQN-SHEGRITCLGLSADGSALCTGSW 251
G L + +G +++ + V SL+N +H G + L S DG+ + + S
Sbjct: 200 PDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASA 259
Query: 252 DTNLKIW 258
D +KIW
Sbjct: 260 DKTIKIW 266
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 5/132 (3%)
Query: 91 SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG 150
+G + SV S +SGS D+T +++ + TF H V++V++ PDG
Sbjct: 144 TGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGP-PFKFKSTFGEHTKFVHSVRYNPDG 202
Query: 151 NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH---VTSIAFSISGRLLFAGYSNG 207
+ F + DGT L++ G + V+ +N + H V + +S G + + ++
Sbjct: 203 SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKN-VAHSGSVFGLTWSPDGTKIASASADK 261
Query: 208 DCYVWDTLLAKV 219
+W+ KV
Sbjct: 262 TIKIWNVATLKV 273
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/74 (21%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHL 62
++SP +A G LD+ ++N+N P+D P+ ++ G S + +T +
Sbjct: 542 VSWSPDNVRLATGSLDNSVIVWNMNKPSDH----PI--IIKGAHAMSSVNSVIWLNETTI 595
Query: 63 ITSSGDQTCVLWDI 76
+++ D W++
Sbjct: 596 VSAGQDSNIKFWNV 609
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 11/77 (14%)
Query: 187 HVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNS-----HEGRITCLGLSA 241
+TS+AFS +G L A + ++ V N L ++ H ++ C+ S
Sbjct: 493 EITSVAFSNNGAFLVATDQS------RKVIPYSVANNFELAHTNSWTFHTAKVACVSWSP 546
Query: 242 DGSALCTGSWDTNLKIW 258
D L TGS D ++ +W
Sbjct: 547 DNVRLATGSLDNSVIVW 563
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 94/226 (41%), Gaps = 25/226 (11%)
Query: 42 LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS 101
L+GH+ ++ +Y + D L + S D + +W G R GHT + S+
Sbjct: 28 LTGHERPLTQVKYNKEGDL-LFSCSKDSSASVWYSLNGERLGTL-----DGHTGTIWSID 81
Query: 102 ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRF-----GTG 156
+ ++ V+GS D + +LWD + V T+ V V+F P GN F
Sbjct: 82 VD-CFTKYCVTGSADYSIKLWDVS-NGQCVATWKS-PVPVKRVEFSPCGNYFLAILDNVM 138
Query: 157 SDDGTCRLFDIR---TGHQLQVYYQQHGENEIPH-----VTSIAFSISGRLLFAGYSNGD 208
+ G+ +++I H+L ++ I H T +S G+ + AG+ +G
Sbjct: 139 KNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGK 198
Query: 209 CYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTN 254
+D ++ L HE I+ + S D + T S DTN
Sbjct: 199 ISKYDVSNNYEYVDSIDL---HEKSISDMQFSPDLTYFITSSRDTN 241
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 72/176 (40%), Gaps = 29/176 (16%)
Query: 3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHL 62
+S G+ + G D S +++++ N + H+ +S Q+ PD T+
Sbjct: 181 AGWSTKGKYIIAGHKDGKISKYDVSN------NYEYVDSIDLHEKSISDMQFSPDL-TYF 233
Query: 63 ITSSGDQTCVLWDITT-----------GLRTSVFG--GEFQS-GHTADVLSVSISGSNSR 108
ITSS D L D++T L T+V EF G + V+ + +N
Sbjct: 234 ITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEG 293
Query: 109 MFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRL 164
F AR + ++ + GH G +NTV P G + +G +DG RL
Sbjct: 294 KF-------EARFYH-KIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRL 341
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 44/108 (40%), Gaps = 5/108 (4%)
Query: 96 DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGT 155
D +V+ + + ++G D +D V + HE ++ ++F PD F T
Sbjct: 176 DAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFIT 235
Query: 156 GSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG 203
S D L D+ T L+ Y E + P T++ + ++ G
Sbjct: 236 SSRDTNSFLVDVSTLQVLKKY-----ETDCPLNTAVITPLKEFIILGG 278
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 188 VTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALC 247
+T + ++ G LLF+ + VW +L + LG+L + H G I + +
Sbjct: 35 LTQVKYNKEGDLLFSCSKDSSASVWYSLNGE---RLGTL-DGHTGTIWSIDVDCFTKYCV 90
Query: 248 TGSWDTNLKIW 258
TGS D ++K+W
Sbjct: 91 TGSADYSIKLW 101
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 95/224 (42%), Gaps = 22/224 (9%)
Query: 40 RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLS 99
R ++GH+ V C + + H++ SSG ++ + + G GH+++V
Sbjct: 170 RTMAGHQARVGCLSW----NRHVL-SSGSRSGAIHHHDVRIANHQIGT--LQGHSSEVCG 222
Query: 100 VSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTG-- 156
++ S+ SG D+ ++WD R +S T H V V + P N TG
Sbjct: 223 LAWR-SDGLQLASGGNDNVVQIWDAR-SSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGG 280
Query: 157 SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFA--GYSNGDCYVWDT 214
+ D ++ TG ++ + VTS+ +S + + + G+ + + +W
Sbjct: 281 TMDKQIHFWNAATGARVNTV------DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSY 334
Query: 215 LLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 258
+ + + +H+ R+ LS DG L T + D NLK W
Sbjct: 335 SSSGLTKQVDI--PAHDTRVLYSALSPDGRILSTAASDENLKFW 376
Score = 27.3 bits (59), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 12/119 (10%)
Query: 141 VNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIA-FSISGRL 199
V +VK+ DG+ G +G ++D+ + +L+ H + S + +
Sbjct: 137 VASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAG--------HQARVGCLSWNRHV 188
Query: 200 LFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 258
L +G +G + D +A +G+LQ H + L +DG L +G D ++IW
Sbjct: 189 LSSGSRSGAIHHHDVRIAN--HQIGTLQ-GHSSEVCGLAWRSDGLQLASGGNDNVVQIW 244
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 77/190 (40%), Gaps = 30/190 (15%)
Query: 90 QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH--------GHEGDV 141
++ H + SV+ S + +GS DST +W A RTF GHE +V
Sbjct: 54 ETAHKKAIRSVAWRPHTS-LLAAGSFDSTVSIWAKE--ESADRTFEMDLLAIIEGHENEV 110
Query: 142 NTVKFFPDGNRFGTGSDDGTCRLFDI-RTGHQLQVY--YQQHGENEIPHVTSIAFSISGR 198
V + DG T S D + +++ +G + + Q+H ++ V + + S
Sbjct: 111 KGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQD----VKHVIWHPSEA 166
Query: 199 LLFAGYSNGDCYVW----DTLLAKVVLNLGSLQNSHEGRITCLGLSADGSA--LCTGSWD 252
LL + + +W D VLN HEG + LC+GS D
Sbjct: 167 LLASSSYDDTVRIWKDYDDDWECVAVLN------GHEGTVWSSDFDKTEGVFRLCSGSDD 220
Query: 253 TNLKIWAFGG 262
+ +++W + G
Sbjct: 221 STVRVWKYMG 230
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 5/102 (4%)
Query: 44 GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS 103
GH ++ ++ P + L++ S D LW+I T ++FGG GH +VLS
Sbjct: 108 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG--VEGHRDEVLSADYD 165
Query: 104 GSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVK 145
++ G D + +LW R+ S+ + D N K
Sbjct: 166 LLGEKIMSCG-MDHSLKLW--RINSKRMMNAIKESYDYNPNK 204
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 126 VASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQVY 176
+ + ++ + GH +N +KF P D N + S D RL++I+T + ++
Sbjct: 98 ITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIF 149
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 5/102 (4%)
Query: 44 GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS 103
GH ++ ++ P + L++ S D LW+I T ++FGG GH +VLS
Sbjct: 112 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG--VEGHRDEVLSADYD 169
Query: 104 GSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVK 145
++ G D + +LW R+ S+ + D N K
Sbjct: 170 LLGEKIMSCG-MDHSLKLW--RINSKRMMNAIKESYDYNPNK 208
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 126 VASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQVY 176
+ + ++ + GH +N +KF P D N + S D RL++I+T + ++
Sbjct: 102 ITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIF 153
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 5/102 (4%)
Query: 44 GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS 103
GH ++ ++ P + L++ S D LW+I T ++FGG GH +VLS
Sbjct: 149 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG--VEGHRDEVLSADYD 206
Query: 104 GSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVK 145
++ G D + +LW R+ S+ + D N K
Sbjct: 207 LLGEKIMSCG-MDHSLKLW--RINSKRMMNAIKESYDYNPNK 245
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 126 VASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQVY 176
+ + ++ + GH +N +KF P D N + S D RL++I+T + ++
Sbjct: 139 ITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIF 190
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 5/102 (4%)
Query: 44 GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS 103
GH ++ ++ P + L++ S D LW+I T ++FGG GH +VLS
Sbjct: 112 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG--VEGHRDEVLSADYD 169
Query: 104 GSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVK 145
++ G D + +LW R+ S+ + D N K
Sbjct: 170 LLGEKIMSCG-MDHSLKLW--RINSKRMMNAIKESYDYNPNK 208
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 126 VASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQVY 176
+ + ++ + GH +N +KF P D N + S D RL++I+T + ++
Sbjct: 102 ITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIF 153
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 5/102 (4%)
Query: 44 GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS 103
GH ++ ++ P + L++ S D LW+I T ++FGG GH +VLS
Sbjct: 113 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG--VEGHRDEVLSADYD 170
Query: 104 GSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVK 145
++ G D + +LW R+ S+ + D N K
Sbjct: 171 LLGEKIMSCG-MDHSLKLW--RINSKRMMNAIKESYDYNPNK 209
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 126 VASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQVY 176
+ + ++ + GH +N +KF P D N + S D RL++I+T + ++
Sbjct: 103 ITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIF 154
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 8/110 (7%)
Query: 88 EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFF 147
E H +++ + S + +S S D ++W + S RT GH V +
Sbjct: 130 EIDQAHVSEITKLKFFPSGEAL-ISSSQDMQLKIWSVKDGSNP-RTLIGHRATVTDIAII 187
Query: 148 PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH--VTSIAFSI 195
G + S DGT RL++ TG + + ++ E PH V SIA +
Sbjct: 188 DRGRNVLSASLDGTIRLWECGTGTTIHTFNRK----ENPHDGVNSIALFV 233
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Query: 198 RLLFAGYSNGDCYVWDTLLAKVVLNLG-SLQNSHEGRITCLGLSADGSALCTGSWDTNLK 256
R G + GD V D+ NL + +H IT L G AL + S D LK
Sbjct: 107 RRFILGTTEGDIKVLDS-----NFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLK 161
Query: 257 IWA 259
IW+
Sbjct: 162 IWS 164
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Query: 57 DEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS-ISGSNSRMFVSGSC 115
D+ + + T+S D+T +WD+++ + + H A V ++ I N ++GS
Sbjct: 96 DDGSKVFTASCDKTAKMWDLSSNQAIQI------AQHDAPVKTIHWIKAPNYSCVMTGSW 149
Query: 116 DSTARLWDTR 125
D T + WDTR
Sbjct: 150 DKTLKFWDTR 159
Score = 31.2 bits (69), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 98 LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV-RTFHGHEGDVNTVKFFPDGNRFGTG 156
LS S ++GS + R W+ + + + + + H G V V + DG++ T
Sbjct: 45 LSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTA 104
Query: 157 SDDGTCRLFDIRTGHQLQV 175
S D T +++D+ + +Q+
Sbjct: 105 SCDKTAKMWDLSSNQAIQI 123
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 60/159 (37%), Gaps = 20/159 (12%)
Query: 105 SNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD---GNRFGTGSDDGT 161
S + MF S + D+ + D V S + + + F P GN GS
Sbjct: 13 SGTSMFGSATTDNHNPMKDIEVTSSP-------DDSIGCLSFSPPTLPGNFLIAGSWAND 65
Query: 162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVL 221
R ++++ Q QQ V + +S G +F + +WD L + +
Sbjct: 66 VRCWEVQDSGQTIPKAQQMHTGP---VLDVCWSDDGSKVFTASCDKTAKMWD-LSSNQAI 121
Query: 222 NLGSLQNSHEGRITCLGL--SADGSALCTGSWDTNLKIW 258
+ H+ + + + + S + TGSWD LK W
Sbjct: 122 QIAQ----HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFW 156
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 8/110 (7%)
Query: 88 EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFF 147
E H +++ + S + +S S D ++W + S RT GH V +
Sbjct: 133 EIDQAHVSEITKLKFFPSGEAL-ISSSQDMQLKIWSVKDGSNP-RTLIGHRATVTDIAII 190
Query: 148 PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH--VTSIAFSI 195
G + S DGT RL++ TG + + ++ E PH V SIA +
Sbjct: 191 DRGRNVLSASLDGTIRLWECGTGTTIHTFNRK----ENPHDGVNSIALFV 236
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Query: 198 RLLFAGYSNGDCYVWDTLLAKVVLNLG-SLQNSHEGRITCLGLSADGSALCTGSWDTNLK 256
R G + GD V D+ NL + +H IT L G AL + S D LK
Sbjct: 110 RRFILGTTEGDIKVLDS-----NFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLK 164
Query: 257 IWA 259
IW+
Sbjct: 165 IWS 167
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 52/126 (41%), Gaps = 13/126 (10%)
Query: 154 GTGSDDGTCRLFDIRTGHQLQVYYQQHGE-NEIPHVTSIAFSISGRLLFAGY---SNGDC 209
TG ++GT ++ ++ T L + QH N + S+ FS G LL + S G
Sbjct: 211 ATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCI 270
Query: 210 YVWDTLLAKVVLNLGSLQNS---------HEGRITCLGLSADGSALCTGSWDTNLKIWAF 260
+++T + + +L +S H + L + G LC+ WD L+ W
Sbjct: 271 TLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV 330
Query: 261 GGYRRV 266
R+
Sbjct: 331 KTKERI 336
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 79/198 (39%), Gaps = 21/198 (10%)
Query: 60 THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTA 119
T ++ D + +WD++ + + H+++V V+ +F+S D
Sbjct: 152 TQAVSGGKDFSVKVWDLSQKAVLKSY-----NAHSSEVNCVAACPGKDTIFLSCGEDGRI 206
Query: 120 RLWDTRVASRAVRT-FHGHEGDVNTVKFFPDG-NRFGTGSDDGTCRLFDIRTGHQLQVYY 177
LWDTR A R F + +V + P+ + F G + G L +I+ Q
Sbjct: 207 LLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQT-S 265
Query: 178 QQHGENEIPHVTSIAFSISGRLLFAGYSNGDC--YVWDTLLAKVVLNLGSLQNSHEGRIT 235
H +N +T +A+S A S DC V D ++V +L SH +T
Sbjct: 266 AVHSQN----ITGLAYSYHSSPFLASISE-DCTVAVLDADFSEVFRDL-----SHRDFVT 315
Query: 236 CLGLSA-DGSALCTGSWD 252
+ S D S T WD
Sbjct: 316 GVAWSPLDHSKFTTVGWD 333
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 52/109 (47%), Gaps = 6/109 (5%)
Query: 62 LITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARL 121
++ +S LW+I + S+ +F D++ S+ VSG D + ++
Sbjct: 108 ILVASDSGAVELWEILE--KESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKV 165
Query: 122 WDTRVASRAV-RTFHGHEGDVNTVKFFPDGNR-FGTGSDDGTCRLFDIR 168
WD ++ +AV ++++ H +VN V P + F + +DG L+D R
Sbjct: 166 WD--LSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTR 212
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 188 VTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALC 247
VT +A+ +S + + +G +W+ L + +L + H+ + L + +DG+
Sbjct: 97 VTDVAW-VSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAV 155
Query: 248 TGSWDTNLKIW 258
+G D ++K+W
Sbjct: 156 SGGKDFSVKVW 166
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 52/127 (40%), Gaps = 13/127 (10%)
Query: 153 FGTGSDDGTCRLFDIRTGHQLQVYYQQHGE-NEIPHVTSIAFSISGRLLFAGY---SNGD 208
TG ++GT ++ ++ T L + QH N + S+ FS G LL + S G
Sbjct: 200 IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGC 259
Query: 209 CYVWDTLLAKVVLNLGSLQNS---------HEGRITCLGLSADGSALCTGSWDTNLKIWA 259
+++T + + +L +S H + L + G LC+ WD L+ W
Sbjct: 260 ITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD 319
Query: 260 FGGYRRV 266
R+
Sbjct: 320 VKTKERI 326
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 7/112 (6%)
Query: 60 THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTA 119
T ++ S D +WD+ + S + H A V V+ S +F+S S D+
Sbjct: 140 TQAVSGSKDICIKVWDLAQQVVLSSY-----RAHAAQVTCVAASPHKDSVFLSCSEDNRI 194
Query: 120 RLWDTRVASRAVRTFHGHEGDVNT-VKFFPDGNR-FGTGSDDGTCRLFDIRT 169
LWDTR A + G + T + + P + F G ++GT L D ++
Sbjct: 195 LLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS 246
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 13/123 (10%)
Query: 13 ACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG---DQ 69
A G + SI++L + + +L + SG K +S ++ P T + T++G D
Sbjct: 182 ASAGSSNFASIWDLKAKKEV-IHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDP 240
Query: 70 TCVLWDI---TTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV 126
+ ++WD+ T L+T GH +LS+ + + +S D+T LW+
Sbjct: 241 SILIWDLRNANTPLQT------LNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPES 294
Query: 127 ASR 129
A +
Sbjct: 295 AEQ 297
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 32 KDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG-DQTCVLWDITTGLRTSVF 85
++ N P+ + GH+ + + +D HL+ SSG D T +LW+ + + S F
Sbjct: 248 RNANTPLQTLNQGHQKGILSLDWC-HQDEHLLLSSGRDNTVLLWNPESAEQLSQF 301
>pdb|1K32|A Chain A, Crystal Structure Of The Tricorn Protease
pdb|1K32|B Chain B, Crystal Structure Of The Tricorn Protease
pdb|1K32|C Chain C, Crystal Structure Of The Tricorn Protease
pdb|1K32|D Chain D, Crystal Structure Of The Tricorn Protease
pdb|1K32|E Chain E, Crystal Structure Of The Tricorn Protease
pdb|1K32|F Chain F, Crystal Structure Of The Tricorn Protease
Length = 1045
Score = 34.7 bits (78), Expect = 0.054, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 20/99 (20%)
Query: 115 CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGT----GSDDGTCRLFDIRTG 170
CD LW+ + S + R + G +N +FFPDG + GS T L+
Sbjct: 32 CDD---LWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLY----- 83
Query: 171 HQLQVYYQQHGEN-EIPHVTSIAFSISGRLLFAGYSNGD 208
+Y +GEN EI +T + +GR +F + D
Sbjct: 84 -----FY--NGENGEIKRITYFSGKSTGRRMFTDVAGFD 115
>pdb|1N6D|A Chain A, Tricorn Protease In Complex With Tetrapeptide Chloromethyl
Ketone Derivative
pdb|1N6D|B Chain B, Tricorn Protease In Complex With Tetrapeptide Chloromethyl
Ketone Derivative
pdb|1N6D|C Chain C, Tricorn Protease In Complex With Tetrapeptide Chloromethyl
Ketone Derivative
pdb|1N6D|D Chain D, Tricorn Protease In Complex With Tetrapeptide Chloromethyl
Ketone Derivative
pdb|1N6D|E Chain E, Tricorn Protease In Complex With Tetrapeptide Chloromethyl
Ketone Derivative
pdb|1N6D|F Chain F, Tricorn Protease In Complex With Tetrapeptide Chloromethyl
Ketone Derivative
pdb|1N6E|A Chain A, Tricorn Protease In Complex With A Tridecapeptide
Chloromethyl Ketone Derivative
pdb|1N6E|C Chain C, Tricorn Protease In Complex With A Tridecapeptide
Chloromethyl Ketone Derivative
pdb|1N6E|E Chain E, Tricorn Protease In Complex With A Tridecapeptide
Chloromethyl Ketone Derivative
pdb|1N6E|G Chain G, Tricorn Protease In Complex With A Tridecapeptide
Chloromethyl Ketone Derivative
pdb|1N6E|I Chain I, Tricorn Protease In Complex With A Tridecapeptide
Chloromethyl Ketone Derivative
pdb|1N6E|K Chain K, Tricorn Protease In Complex With A Tridecapeptide
Chloromethyl Ketone Derivative
pdb|1N6F|A Chain A, Tricorn Protease In Complex With Z-Phe-Diketo-Arg-Glu-Phe
pdb|1N6F|B Chain B, Tricorn Protease In Complex With Z-Phe-Diketo-Arg-Glu-Phe
pdb|1N6F|C Chain C, Tricorn Protease In Complex With Z-Phe-Diketo-Arg-Glu-Phe
pdb|1N6F|D Chain D, Tricorn Protease In Complex With Z-Phe-Diketo-Arg-Glu-Phe
pdb|1N6F|E Chain E, Tricorn Protease In Complex With Z-Phe-Diketo-Arg-Glu-Phe
pdb|1N6F|F Chain F, Tricorn Protease In Complex With Z-Phe-Diketo-Arg-Glu-Phe
Length = 1071
Score = 34.7 bits (78), Expect = 0.061, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 20/99 (20%)
Query: 115 CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGT----GSDDGTCRLFDIRTG 170
CD LW+ + S + R + G +N +FFPDG + GS T L+
Sbjct: 58 CDD---LWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLY----- 109
Query: 171 HQLQVYYQQHGEN-EIPHVTSIAFSISGRLLFAGYSNGD 208
+Y +GEN EI +T + +GR +F + D
Sbjct: 110 -----FY--NGENGEIKRITYFSGKSTGRRMFTDVAGFD 141
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Query: 93 HTADVLSVSISGSNSRMFVSGSCDSTARLWDTR-VASRAVRTFH-GHEGDVNTVKFFPDG 150
H V V+++ + S D T ++WD R V +A + H VN F PDG
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 308
Query: 151 NRFGTGSDDGTCRLF 165
R T R++
Sbjct: 309 ARLLTTDQKSEIRVY 323
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Query: 93 HTADVLSVSISGSNSRMFVSGSCDSTARLWDTR-VASRAVRTFH-GHEGDVNTVKFFPDG 150
H V V+++ + S D T ++WD R V +A + H VN F PDG
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 308
Query: 151 NRFGTGSDDGTCRLF 165
R T R++
Sbjct: 309 ARLLTTDQKSEIRVY 323
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Query: 93 HTADVLSVSISGSNSRMFVSGSCDSTARLWDTR-VASRAVRTFH-GHEGDVNTVKFFPDG 150
H V V+++ + S D T ++WD R V +A + H VN F PDG
Sbjct: 250 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 309
Query: 151 NRFGTGSDDGTCRLF 165
R T R++
Sbjct: 310 ARLLTTDQKSEIRVY 324
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 76/186 (40%), Gaps = 19/186 (10%)
Query: 1 MTC-AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDED 59
+TC A+S G S+ G + ++N K G L +L+ H+ + ++ D
Sbjct: 111 VTCLAWSHDGNSIVTGVENGELRLWN------KTGALL--NVLNFHRAPIVSVKWNKD-G 161
Query: 60 THLITSSGDQTCVLWDITTGLRTSVFGGEFQSG-------HTAD-VLSVSISGSNSRMFV 111
TH+I+ + +LW++ +G F + G H+ D L V + + FV
Sbjct: 162 THIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFV 221
Query: 112 SGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH 171
++ + + GH G ++ ++F + SDDGT R++ G+
Sbjct: 222 IPGPKGAIFVYQITEKTPTGKLI-GHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGN 280
Query: 172 QLQVYY 177
+Y
Sbjct: 281 SQNCFY 286
Score = 27.3 bits (59), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 233 RITCLGLSADGSALCTGSWDTNLKIW 258
++TCL S DG+++ TG + L++W
Sbjct: 110 QVTCLAWSHDGNSIVTGVENGELRLW 135
>pdb|1WDS|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta- Amylase
Length = 495
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 24 FNLNSPTDKDGNLPVSRMLSGHKGYVS-CCQYVPDEDTHLITSSGDQTCVLWDITTGLRT 82
+NLN D+DG P++RMLS H ++ C + D + SG Q V ++ G R
Sbjct: 317 YNLN---DRDGYRPIARMLSRHHAILNFACLEMRDSEQPSDAKSGPQELVQQVLSGGWRE 373
Query: 83 SV 84
+
Sbjct: 374 DI 375
>pdb|1WDQ|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta-Amylase
Length = 495
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 24 FNLNSPTDKDGNLPVSRMLSGHKGYVS-CCQYVPDEDTHLITSSGDQTCVLWDITTGLRT 82
+NLN D+DG P++RMLS H ++ C + D + SG Q V ++ G R
Sbjct: 317 YNLN---DRDGYRPIARMLSRHHAILNFVCLEMRDSEQPSDAKSGPQELVQQVLSGGWRE 373
Query: 83 SV 84
+
Sbjct: 374 DI 375
>pdb|1Q6G|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (N340t)
With Increased Ph Optimum
Length = 495
Score = 31.6 bits (70), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 24 FNLNSPTDKDGNLPVSRMLSGHKGYVS-CCQYVPDEDTHLITSSGDQTCVLWDITTGLRT 82
+NLN D+DG P++RMLS H ++ C + D + SG Q V ++ G R
Sbjct: 317 YNLN---DRDGYRPIARMLSRHHAILTFTCLEMRDSEQPSDAKSGPQELVQQVLSGGWRE 373
Query: 83 SV 84
+
Sbjct: 374 DI 375
>pdb|2DQX|A Chain A, Mutant Beta-Amylase (W55r) From Soy Bean
Length = 495
Score = 31.6 bits (70), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 24 FNLNSPTDKDGNLPVSRMLSGHKGYVS-CCQYVPDEDTHLITSSGDQTCVLWDITTGLRT 82
+NLN D+DG P++RMLS H ++ C + D + SG Q V ++ G R
Sbjct: 317 YNLN---DRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQELVQQVLSGGWRE 373
Query: 83 SV 84
+
Sbjct: 374 DI 375
>pdb|1BTC|A Chain A, Three-Dimensional Structure Of Soybean Beta-Amylase
Determined At 3.0 Angstroms Resolution: Preliminary
Chain Tracing Of The Complex With Alpha-Cyclodextrin
Length = 491
Score = 31.6 bits (70), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 24 FNLNSPTDKDGNLPVSRMLSGHKGYVS-CCQYVPDEDTHLITSSGDQTCVLWDITTGLRT 82
+NLN D+DG P++RMLS H ++ C + D + SG Q V ++ G R
Sbjct: 313 YNLN---DRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQELVQQVLSGGWRE 369
Query: 83 SV 84
+
Sbjct: 370 DI 371
>pdb|1V3H|A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction
Of Soybean Beta-Amylase
Length = 495
Score = 31.6 bits (70), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 24 FNLNSPTDKDGNLPVSRMLSGHKGYVS-CCQYVPDEDTHLITSSGDQTCVLWDITTGLRT 82
+NLN D+DG P++RMLS H ++ C + D + SG Q V ++ G R
Sbjct: 317 YNLN---DRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQELVQQVLSGGWRE 373
Query: 83 SV 84
+
Sbjct: 374 DI 375
>pdb|1V3I|A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction
Of Soybean Beta-Amylase
Length = 495
Score = 31.6 bits (70), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 24 FNLNSPTDKDGNLPVSRMLSGHKGYVS-CCQYVPDEDTHLITSSGDQTCVLWDITTGLRT 82
+NLN D+DG P++RMLS H ++ C + D + SG Q V ++ G R
Sbjct: 317 YNLN---DRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQELVQQVLSGGWRE 373
Query: 83 SV 84
+
Sbjct: 374 DI 375
>pdb|1Q6C|A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With
Maltose
pdb|1WDP|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta-Amylase
pdb|1BFN|A Chain A, Beta-AmylaseBETA-Cyclodextrin Complex
Length = 495
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 24 FNLNSPTDKDGNLPVSRMLSGHKGYVS-CCQYVPDEDTHLITSSGDQTCVLWDITTGLRT 82
+NLN D+DG P++RMLS H ++ C + D + SG Q V ++ G R
Sbjct: 317 YNLN---DRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQELVQQVLSGGWRE 373
Query: 83 SV 84
+
Sbjct: 374 DI 375
>pdb|1WDR|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta-Amylase
Length = 495
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 24 FNLNSPTDKDGNLPVSRMLSGHKGYVS-CCQYVPDEDTHLITSSGDQTCVLWDITTGLRT 82
+NLN D+DG P++RMLS H ++ C + D + SG Q V ++ G R
Sbjct: 317 YNLN---DRDGYRPIARMLSRHHAILNFSCLEMRDSEQPSDAKSGPQELVQQVLSGGWRE 373
Query: 83 SV 84
+
Sbjct: 374 DI 375
>pdb|1BYA|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
pdb|1BYB|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
pdb|1BYC|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
pdb|1BYD|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
Length = 495
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 24 FNLNSPTDKDGNLPVSRMLSGHKGYVS-CCQYVPDEDTHLITSSGDQTCVLWDITTGLRT 82
+NLN D+DG P++RMLS H ++ C + D + SG Q V ++ G R
Sbjct: 317 YNLN---DRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQELVQQVLSGGWRE 373
Query: 83 SV 84
+
Sbjct: 374 DI 375
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 17/115 (14%)
Query: 110 FVSGSCDSTARLWDTRVASRAVRTFHGHEG----DVNTVKFFPDGNRFG-------TGSD 158
V+GS D T ++WD R V +G D TV F GN + G D
Sbjct: 132 IVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAF---GNAYNQEERVVCAGYD 188
Query: 159 DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD 213
+G +LFD+R + + ++ + +N + + IS L A G +V+D
Sbjct: 189 NGDIKLFDLRN---MALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFD 240
>pdb|1Q6E|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (E178y)
With Increased Ph Optimum At Ph 5.4
pdb|1Q6F|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (E178y)
With Increased Ph Optimum At Ph 7.1
Length = 495
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 24 FNLNSPTDKDGNLPVSRMLSGHKGYVS-CCQYVPDEDTHLITSSGDQTCVLWDITTGLRT 82
+NLN D+DG P++RMLS H ++ C + D + SG Q V ++ G R
Sbjct: 317 YNLN---DRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQELVQQVLSGGWRE 373
Query: 83 SV 84
+
Sbjct: 374 DI 375
>pdb|1Q6D|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (M51t)
With Increased Ph Optimum
Length = 495
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 24 FNLNSPTDKDGNLPVSRMLSGHKGYVS-CCQYVPDEDTHLITSSGDQTCVLWDITTGLRT 82
+NLN D+DG P++RMLS H ++ C + D + SG Q V ++ G R
Sbjct: 317 YNLN---DRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQELVQQVLSGGWRE 373
Query: 83 SV 84
+
Sbjct: 374 DI 375
>pdb|1UKO|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKO|B Chain B, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKO|C Chain C, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKO|D Chain D, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
Length = 495
Score = 31.2 bits (69), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 24 FNLNSPTDKDGNLPVSRMLSGHKGYVS-CCQYVPDEDTHLITSSGDQTCVLWDITTGLRT 82
+NLN D+DG P++RMLS H ++ C + D + SG Q V ++ G R
Sbjct: 317 YNLN---DRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQELVQQVLSGGWRE 373
Query: 83 SV 84
+
Sbjct: 374 YI 375
>pdb|1UKP|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKP|B Chain B, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKP|C Chain C, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKP|D Chain D, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
Length = 495
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 24 FNLNSPTDKDGNLPVSRMLSGHKGYVS-CCQYVPDEDTHLITSSGDQTCVLWDITTGLRT 82
+NLN D+DG P++RMLS H ++ C + D + SG Q V ++ G R
Sbjct: 317 YNLN---DRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQELVQQVLSGGWRE 373
Query: 83 SV 84
+
Sbjct: 374 YI 375
>pdb|3DW8|B Chain B, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
pdb|3DW8|E Chain E, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
Length = 447
Score = 30.8 bits (68), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 43/208 (20%), Positives = 73/208 (35%), Gaps = 57/208 (27%)
Query: 49 VSCCQYVPDEDT-HLITSSGDQTCVLWDIT------------------------TGLRTS 83
++ +++P ++ + S+ D+T LW I+ T LR
Sbjct: 96 INKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVP 155
Query: 84 VFGGE-----------FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVR 132
VF F + HT + S+SI S+ ++S D LW + R+
Sbjct: 156 VFRPMDLMVEASPRRIFANAHTYHINSISI-NSDYETYLSAD-DLRINLWHLEITDRSFN 213
Query: 133 TFHGHEGD-------VNTVKFFPDG-NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENE 184
+ + +F P+ N F S GT RL D+R + + E E
Sbjct: 214 IVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPE 273
Query: 185 IP-----------HVTSIAFSISGRLLF 201
P ++ + FS SGR +
Sbjct: 274 DPSNRSFFSEIISSISDVKFSHSGRYMM 301
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 30.4 bits (67), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 105 SNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCR 163
+ + +G D +WD R + V HE ++ V F P + T S+DG+
Sbjct: 247 NQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLW 306
Query: 164 LFDIRT 169
+D T
Sbjct: 307 HWDAST 312
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 30.4 bits (67), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 27/129 (20%), Positives = 49/129 (37%), Gaps = 21/129 (16%)
Query: 59 DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS-ISGSNSRMFVSGSCDS 117
D H+ D+ W+++ R H + ++++ S R+ S S D
Sbjct: 32 DQHIKVFKLDKDTSNWELSDSWR----------AHDSSIVAIDWASPEYGRIIASASYDK 81
Query: 118 TARLWDTRVASRAVR--------TFHGHEGDVNTVKFFPD--GNRFGTGSDDGTCRLFDI 167
T +LW+ T + +G + +VKF P G + +DG RL+D
Sbjct: 82 TVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDA 141
Query: 168 RTGHQLQVY 176
L+ +
Sbjct: 142 LEPSDLRSW 150
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 30.4 bits (67), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 27/129 (20%), Positives = 49/129 (37%), Gaps = 21/129 (16%)
Query: 59 DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS-ISGSNSRMFVSGSCDS 117
D H+ D+ W+++ R H + ++++ S R+ S S D
Sbjct: 30 DQHIKVFKLDKDTSNWELSDSWR----------AHDSSIVAIDWASPEYGRIIASASYDK 79
Query: 118 TARLWDTRVASRAVR--------TFHGHEGDVNTVKFFPD--GNRFGTGSDDGTCRLFDI 167
T +LW+ T + +G + +VKF P G + +DG RL+D
Sbjct: 80 TVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDA 139
Query: 168 RTGHQLQVY 176
L+ +
Sbjct: 140 LEPSDLRSW 148
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 30.4 bits (67), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 27/129 (20%), Positives = 49/129 (37%), Gaps = 21/129 (16%)
Query: 59 DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVS-ISGSNSRMFVSGSCDS 117
D H+ D+ W+++ R H + ++++ S R+ S S D
Sbjct: 32 DQHIKVFKLDKDTSNWELSDSWR----------AHDSSIVAIDWASPEYGRIIASASYDK 81
Query: 118 TARLWDTRVASRAVR--------TFHGHEGDVNTVKFFPD--GNRFGTGSDDGTCRLFDI 167
T +LW+ T + +G + +VKF P G + +DG RL+D
Sbjct: 82 TVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDA 141
Query: 168 RTGHQLQVY 176
L+ +
Sbjct: 142 LEPSDLRSW 150
>pdb|2VDU|B Chain B, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
pdb|2VDU|D Chain D, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
Length = 450
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 38 VSRMLSGHKGYVS--CCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVF 85
V + L GHK +VS CC +D L+++ GD WD TG S F
Sbjct: 233 VDKWLFGHKHFVSSICC----GKDYLLLSAGGDDKIFAWDWKTGKNLSTF 278
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 8/95 (8%)
Query: 137 HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS 196
HE ++ + G R T S D + ++FD+R G Q+ + + E + V + A +
Sbjct: 12 HEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQV-AWAHPMY 70
Query: 197 GRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHE 231
G +L + + +W G+ + SHE
Sbjct: 71 GNILASCSYDRKVIIWRE-------ENGTWEKSHE 98
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 15 GGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE--DTHLITSSGDQTCV 72
GG D++ I+ NS + L GH +V + P ++L + S D+TC+
Sbjct: 176 GGADNLVKIWKYNSDAQ---TYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCI 232
Query: 73 LW 74
+W
Sbjct: 233 IW 234
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 15 GGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE--DTHLITSSGDQTCV 72
GG D++ I+ NS + L GH +V + P ++L + S D+TC+
Sbjct: 178 GGADNLVKIWKYNSDAQ---TYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCI 234
Query: 73 LW 74
+W
Sbjct: 235 IW 236
>pdb|4EGE|A Chain A, Crystal Structure Of Dipeptidase Pepe From Mycobacterium
Ulcerans
Length = 378
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 157 SDDGTCRLFDIRTGHQLQVYYQQH----GENEIPHVTSIAFSISGRLLFAG 203
+D G F RTGH + + + NE+P V +AFSI + F G
Sbjct: 296 ADAGLAEYFVHRTGHGIGLCVHEEPYIVAGNELPLVAGMAFSIEPGIYFPG 346
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Query: 9 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE--DTHLITSS 66
+ GG D++ I+ NS + L GH +V + P ++L + S
Sbjct: 170 SRKFVTGGADNLVKIWKYNSDAQ---TYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS 226
Query: 67 GDQTCVLW 74
D+TC++W
Sbjct: 227 QDRTCIIW 234
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 15 GGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE--DTHLITSSGDQTCV 72
GG D++ I+ NS + L GH +V + P +++ + S D+TC+
Sbjct: 176 GGADNLVKIWKYNSDAQ---TYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCI 232
Query: 73 LW 74
+W
Sbjct: 233 IW 234
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 27.3 bits (59), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 86/221 (38%), Gaps = 42/221 (19%)
Query: 48 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL--------RTSVFGGEFQSGHTADVLS 99
+V ++ PD +IT D+ +D +G + V GG F
Sbjct: 208 FVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIF---------- 257
Query: 100 VSISGSNSRMFVSGSCDSTARLWDTRVASRAVR--TFHGHEGDVNTVKFFPDGN-RFGTG 156
++S +S+ F + D+T R+WD S+ V+ T + V GN R +
Sbjct: 258 -ALSWLDSQKFATVGADATIRVWDV-TTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISL 315
Query: 157 SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL 216
S DGT +++ GH +V G N+ +T++ + L +G +G W +
Sbjct: 316 SLDGTLNFYEL--GHD-EVLKTISGHNK--GITALTVN----PLISGSYDGRIMEWSS-- 364
Query: 217 AKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKI 257
S+ H I L ++ + SWD LK+
Sbjct: 365 -------SSMHQDHSNLIVSLD-NSKAQEYSSISWDDTLKV 397
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,834,488
Number of Sequences: 62578
Number of extensions: 369292
Number of successful extensions: 1749
Number of sequences better than 100.0: 120
Number of HSP's better than 100.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 854
Number of HSP's gapped (non-prelim): 364
length of query: 267
length of database: 14,973,337
effective HSP length: 97
effective length of query: 170
effective length of database: 8,903,271
effective search space: 1513556070
effective search space used: 1513556070
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)