Query 024451
Match_columns 267
No_of_seqs 170 out of 1793
Neff 10.9
Searched_HMMs 46136
Date Fri Mar 29 04:42:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024451.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024451hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0286 G-protein beta subunit 100.0 2.2E-47 4.8E-52 284.6 26.7 243 1-259 101-343 (343)
2 KOG0272 U4/U6 small nuclear ri 100.0 9.7E-45 2.1E-49 282.3 18.1 240 2-264 180-421 (459)
3 KOG0263 Transcription initiati 100.0 2.3E-43 5E-48 293.3 23.1 244 2-262 383-650 (707)
4 KOG0271 Notchless-like WD40 re 100.0 1.4E-42 3E-47 267.6 22.5 237 1-259 161-479 (480)
5 KOG0271 Notchless-like WD40 re 100.0 2.2E-42 4.8E-47 266.5 22.8 243 1-261 119-439 (480)
6 KOG0272 U4/U6 small nuclear ri 100.0 1.6E-42 3.4E-47 270.0 17.7 234 2-259 222-458 (459)
7 KOG0279 G protein beta subunit 100.0 3.3E-38 7.1E-43 234.2 26.5 240 2-261 68-313 (315)
8 KOG0279 G protein beta subunit 100.0 2.3E-38 4.9E-43 235.1 25.3 234 9-262 28-263 (315)
9 KOG0273 Beta-transducin family 100.0 1.8E-36 3.8E-41 239.3 25.0 233 2-260 240-481 (524)
10 KOG0315 G-protein beta subunit 100.0 2.8E-35 6E-40 215.6 24.6 243 2-262 45-289 (311)
11 KOG0286 G-protein beta subunit 100.0 1.1E-34 2.4E-39 216.8 27.0 242 1-260 59-302 (343)
12 KOG0265 U5 snRNP-specific prot 100.0 3.9E-35 8.4E-40 219.9 24.2 240 1-257 51-334 (338)
13 KOG0284 Polyadenylation factor 100.0 5.9E-37 1.3E-41 238.1 14.5 236 2-261 101-337 (464)
14 KOG0284 Polyadenylation factor 100.0 1.3E-36 2.9E-41 236.2 15.2 234 2-259 143-378 (464)
15 KOG0319 WD40-repeat-containing 100.0 3.1E-35 6.7E-40 243.3 22.9 244 2-259 370-617 (775)
16 KOG0266 WD40 repeat-containing 100.0 1.2E-34 2.6E-39 244.5 26.7 241 2-261 208-454 (456)
17 KOG0266 WD40 repeat-containing 100.0 4.9E-34 1.1E-38 240.7 30.1 241 2-262 164-410 (456)
18 KOG0277 Peroxisomal targeting 100.0 2.4E-35 5.3E-40 216.4 18.9 240 2-260 65-308 (311)
19 KOG0282 mRNA splicing factor [ 100.0 7.4E-36 1.6E-40 236.4 17.2 239 3-259 220-503 (503)
20 KOG0283 WD40 repeat-containing 100.0 3.5E-34 7.5E-39 240.5 25.1 251 2-264 272-579 (712)
21 KOG0263 Transcription initiati 100.0 7E-35 1.5E-39 242.9 20.5 197 1-217 455-651 (707)
22 KOG0295 WD40 repeat-containing 100.0 3.6E-34 7.9E-39 219.7 19.8 238 3-264 114-367 (406)
23 KOG0293 WD40 repeat-containing 100.0 4.1E-34 8.8E-39 222.9 19.6 247 3-265 230-517 (519)
24 KOG0310 Conserved WD40 repeat- 100.0 2.1E-33 4.6E-38 222.7 23.8 234 2-258 73-306 (487)
25 KOG0645 WD40 repeat protein [G 100.0 5E-33 1.1E-37 206.0 24.2 239 2-260 66-310 (312)
26 KOG0291 WD40-repeat-containing 100.0 6E-33 1.3E-37 230.5 27.2 240 2-261 355-612 (893)
27 KOG0281 Beta-TrCP (transducin 100.0 4E-35 8.7E-40 224.3 13.3 221 8-261 206-428 (499)
28 PLN00181 protein SPA1-RELATED; 100.0 1.8E-32 4E-37 246.5 32.4 240 2-260 537-792 (793)
29 KOG0295 WD40 repeat-containing 100.0 2.2E-33 4.7E-38 215.5 22.0 236 1-259 154-404 (406)
30 PLN00181 protein SPA1-RELATED; 100.0 2.6E-32 5.7E-37 245.5 32.9 242 2-261 488-738 (793)
31 KOG0285 Pleiotropic regulator 100.0 2.4E-33 5.2E-38 215.1 20.5 233 2-260 156-388 (460)
32 KOG0318 WD40 repeat stress pro 100.0 3.7E-32 8.1E-37 217.6 28.1 248 2-261 195-560 (603)
33 KOG0316 Conserved WD40 repeat- 100.0 8.3E-33 1.8E-37 201.2 21.8 233 2-261 22-257 (307)
34 PTZ00421 coronin; Provisional 100.0 3.2E-31 6.9E-36 223.4 31.6 251 5-262 28-291 (493)
35 KOG0315 G-protein beta subunit 100.0 4.9E-32 1.1E-36 198.6 22.8 232 10-263 11-247 (311)
36 KOG0275 Conserved WD40 repeat- 100.0 4.9E-34 1.1E-38 216.8 12.0 247 2-259 218-507 (508)
37 KOG0643 Translation initiation 100.0 1.4E-31 3.1E-36 198.0 24.4 241 3-261 16-317 (327)
38 KOG0313 Microtubule binding pr 100.0 2.5E-32 5.5E-37 210.6 20.5 236 9-262 115-377 (423)
39 KOG0296 Angio-associated migra 100.0 6.5E-31 1.4E-35 202.0 27.7 240 1-260 68-397 (399)
40 PTZ00420 coronin; Provisional 100.0 1.3E-30 2.7E-35 221.1 31.4 237 14-261 49-293 (568)
41 KOG0276 Vesicle coat complex C 100.0 8.4E-32 1.8E-36 219.6 22.3 233 2-257 60-295 (794)
42 cd00200 WD40 WD40 domain, foun 100.0 2.6E-30 5.7E-35 205.3 30.3 237 2-262 14-250 (289)
43 cd00200 WD40 WD40 domain, foun 100.0 2.3E-30 5E-35 205.6 29.5 234 2-259 56-289 (289)
44 KOG0278 Serine/threonine kinas 100.0 5.1E-33 1.1E-37 204.0 12.8 241 2-260 19-296 (334)
45 KOG0276 Vesicle coat complex C 100.0 2E-31 4.3E-36 217.5 22.8 239 2-263 18-259 (794)
46 KOG0640 mRNA cleavage stimulat 100.0 6.4E-32 1.4E-36 203.9 18.4 250 2-259 117-424 (430)
47 KOG0291 WD40-repeat-containing 100.0 8.4E-31 1.8E-35 217.8 26.6 239 2-263 270-510 (893)
48 KOG0273 Beta-transducin family 100.0 7.4E-31 1.6E-35 207.6 24.5 235 1-261 280-523 (524)
49 KOG0645 WD40 repeat protein [G 100.0 4.2E-30 9E-35 190.5 26.9 238 2-260 19-260 (312)
50 KOG0292 Vesicle coat complex C 100.0 1.9E-31 4.1E-36 225.1 21.9 246 3-265 15-284 (1202)
51 KOG0285 Pleiotropic regulator 100.0 1.5E-31 3.2E-36 205.3 18.7 207 36-260 141-347 (460)
52 KOG0306 WD40-repeat-containing 100.0 8.8E-31 1.9E-35 217.6 22.5 243 1-262 416-665 (888)
53 KOG0292 Vesicle coat complex C 100.0 2.2E-30 4.8E-35 218.7 25.0 237 3-261 57-321 (1202)
54 KOG0319 WD40-repeat-containing 100.0 2E-30 4.3E-35 215.0 23.7 237 5-260 332-576 (775)
55 PTZ00421 coronin; Provisional 100.0 1.6E-29 3.6E-34 213.1 29.0 228 2-242 80-314 (493)
56 KOG0264 Nucleosome remodeling 100.0 1.2E-30 2.5E-35 205.6 20.3 251 7-261 134-404 (422)
57 KOG0318 WD40 repeat stress pro 100.0 2.8E-29 6.2E-34 201.2 26.8 244 3-261 65-350 (603)
58 KOG1407 WD40 repeat protein [F 100.0 9.4E-30 2E-34 187.8 22.1 236 2-259 25-309 (313)
59 KOG0288 WD40 repeat protein Ti 100.0 1.7E-30 3.6E-35 202.6 18.7 236 2-259 224-459 (459)
60 KOG0269 WD40 repeat-containing 100.0 4.9E-31 1.1E-35 219.6 16.6 236 7-258 98-337 (839)
61 KOG0281 Beta-TrCP (transducin 100.0 4.2E-31 9.1E-36 202.3 14.4 233 3-262 241-478 (499)
62 KOG0277 Peroxisomal targeting 100.0 7.9E-30 1.7E-34 187.6 20.4 242 1-261 12-265 (311)
63 KOG1332 Vesicle coat complex C 100.0 4.7E-30 1E-34 187.7 18.2 242 8-260 22-285 (299)
64 KOG0305 Anaphase promoting com 100.0 1.9E-29 4.2E-34 206.6 23.4 235 2-262 222-462 (484)
65 KOG0973 Histone transcription 100.0 6.7E-30 1.5E-34 219.9 21.1 257 2-266 18-316 (942)
66 KOG1446 Histone H3 (Lys4) meth 100.0 3.6E-28 7.7E-33 183.9 27.8 241 2-262 19-263 (311)
67 KOG0772 Uncharacterized conser 100.0 2.4E-29 5.1E-34 201.3 21.7 257 2-266 172-450 (641)
68 KOG0641 WD40 repeat protein [G 100.0 1.1E-27 2.4E-32 173.9 26.7 254 2-262 37-304 (350)
69 KOG0313 Microtubule binding pr 100.0 1.5E-28 3.2E-33 190.0 21.6 236 10-260 160-417 (423)
70 KOG0772 Uncharacterized conser 100.0 8.6E-29 1.9E-33 198.1 19.6 250 2-258 219-484 (641)
71 PTZ00420 coronin; Provisional 100.0 2.6E-27 5.5E-32 201.1 29.1 228 2-243 79-318 (568)
72 KOG0299 U3 snoRNP-associated p 100.0 5E-28 1.1E-32 191.1 21.6 246 1-261 146-410 (479)
73 KOG0265 U5 snRNP-specific prot 100.0 3.2E-28 7E-33 182.9 19.4 206 39-261 40-246 (338)
74 KOG0647 mRNA export protein (c 100.0 2.9E-27 6.2E-32 178.0 22.8 246 2-266 32-286 (347)
75 KOG0316 Conserved WD40 repeat- 100.0 1.3E-27 2.8E-32 174.2 20.3 203 38-259 9-211 (307)
76 KOG0274 Cdc4 and related F-box 100.0 3E-27 6.5E-32 199.9 24.7 224 9-263 218-443 (537)
77 KOG0289 mRNA splicing factor [ 100.0 4.7E-27 1E-31 184.6 23.7 231 6-259 228-460 (506)
78 KOG0289 mRNA splicing factor [ 100.0 5.5E-27 1.2E-31 184.2 24.1 237 3-260 267-505 (506)
79 KOG0274 Cdc4 and related F-box 100.0 2.7E-27 5.8E-32 200.2 22.8 229 3-263 255-484 (537)
80 KOG0308 Conserved WD40 repeat- 100.0 9.6E-28 2.1E-32 196.8 18.7 240 7-262 35-286 (735)
81 KOG0641 WD40 repeat protein [G 100.0 5.1E-26 1.1E-30 165.3 25.1 246 1-262 93-350 (350)
82 KOG1036 Mitotic spindle checkp 100.0 9E-27 2E-31 175.7 21.9 241 2-266 18-267 (323)
83 KOG0299 U3 snoRNP-associated p 100.0 4.7E-27 1E-31 185.7 21.3 235 1-254 206-449 (479)
84 KOG0310 Conserved WD40 repeat- 100.0 7.7E-27 1.7E-31 185.6 21.8 240 2-265 31-272 (487)
85 KOG0268 Sof1-like rRNA process 100.0 6.3E-28 1.4E-32 185.6 14.7 231 2-262 71-303 (433)
86 KOG0300 WD40 repeat-containing 100.0 5.5E-27 1.2E-31 178.0 19.2 246 2-261 195-476 (481)
87 KOG0294 WD40 repeat-containing 100.0 2.6E-26 5.6E-31 173.8 22.5 239 11-263 3-283 (362)
88 KOG0288 WD40 repeat protein Ti 100.0 1.2E-27 2.7E-32 186.7 14.0 238 3-262 181-418 (459)
89 KOG0282 mRNA splicing factor [ 100.0 7.2E-28 1.6E-32 191.3 12.4 212 38-262 206-463 (503)
90 KOG0643 Translation initiation 100.0 1.3E-25 2.7E-30 166.6 22.4 208 41-265 5-224 (327)
91 KOG0264 Nucleosome remodeling 100.0 1.3E-26 2.8E-31 182.9 18.2 209 2-215 182-404 (422)
92 KOG0283 WD40 repeat-containing 99.9 3.9E-26 8.5E-31 192.3 20.5 208 41-260 261-531 (712)
93 KOG0640 mRNA cleavage stimulat 99.9 1.6E-26 3.5E-31 174.9 16.2 217 40-264 106-338 (430)
94 KOG1408 WD40 repeat protein [F 99.9 4.7E-26 1E-30 189.0 20.2 241 2-260 464-712 (1080)
95 KOG0267 Microtubule severing p 99.9 1.3E-27 2.8E-32 198.1 10.6 224 6-253 37-260 (825)
96 KOG0278 Serine/threonine kinas 99.9 2.5E-26 5.5E-31 169.0 15.7 196 2-218 105-300 (334)
97 KOG4283 Transcription-coupled 99.9 3.4E-25 7.3E-30 166.6 21.7 248 7-260 54-364 (397)
98 KOG0973 Histone transcription 99.9 2.4E-25 5.3E-30 192.1 23.6 244 2-261 74-355 (942)
99 KOG1446 Histone H3 (Lys4) meth 99.9 2.8E-24 6.1E-29 162.9 26.4 235 4-261 63-303 (311)
100 KOG0306 WD40-repeat-containing 99.9 3.1E-25 6.8E-30 184.8 22.3 232 2-260 378-621 (888)
101 KOG1274 WD40 repeat protein [G 99.9 1.1E-24 2.4E-29 185.1 26.0 243 2-262 18-263 (933)
102 KOG1407 WD40 repeat protein [F 99.9 1.3E-25 2.8E-30 166.0 17.8 208 40-263 14-221 (313)
103 KOG0308 Conserved WD40 repeat- 99.9 2.9E-25 6.3E-30 182.3 19.6 241 4-260 80-326 (735)
104 KOG2096 WD40 repeat protein [G 99.9 2.4E-24 5.1E-29 163.7 21.6 247 2-259 91-400 (420)
105 KOG0301 Phospholipase A2-activ 99.9 1.1E-24 2.4E-29 180.0 21.5 222 4-261 65-288 (745)
106 KOG0321 WD40 repeat-containing 99.9 1.1E-24 2.3E-29 178.7 20.7 254 2-262 54-348 (720)
107 KOG0639 Transducin-like enhanc 99.9 2E-25 4.4E-30 178.6 16.0 237 4-260 426-662 (705)
108 KOG0300 WD40 repeat-containing 99.9 3.1E-25 6.8E-30 168.6 16.0 237 9-264 160-431 (481)
109 KOG2445 Nuclear pore complex c 99.9 7E-24 1.5E-28 160.3 22.9 251 2-260 18-317 (361)
110 KOG0269 WD40 repeat-containing 99.9 1.9E-25 4E-30 186.6 15.9 247 3-261 45-296 (839)
111 KOG2055 WD40 repeat protein [G 99.9 1.8E-23 3.9E-28 165.7 24.9 245 2-261 218-512 (514)
112 KOG0646 WD40 repeat protein [G 99.9 3.3E-24 7.1E-29 170.0 20.5 228 17-264 59-310 (476)
113 KOG0302 Ribosome Assembly prot 99.9 2.4E-24 5.3E-29 166.7 19.1 244 8-258 164-436 (440)
114 KOG0301 Phospholipase A2-activ 99.9 2.7E-24 5.9E-29 177.8 20.1 225 8-261 24-249 (745)
115 KOG0639 Transducin-like enhanc 99.9 8.9E-25 1.9E-29 175.0 16.7 234 2-260 470-703 (705)
116 KOG0296 Angio-associated migra 99.9 1.7E-23 3.7E-28 161.3 22.9 206 39-260 57-262 (399)
117 KOG0647 mRNA export protein (c 99.9 1E-23 2.2E-28 159.0 21.0 227 1-248 76-310 (347)
118 KOG1036 Mitotic spindle checkp 99.9 1.6E-23 3.4E-28 158.3 22.2 228 1-251 58-294 (323)
119 KOG4283 Transcription-coupled 99.9 4.1E-24 8.8E-29 160.8 18.8 213 41-260 38-275 (397)
120 KOG1273 WD40 repeat protein [G 99.9 1.5E-23 3.2E-28 159.1 21.6 248 2-267 28-288 (405)
121 KOG0305 Anaphase promoting com 99.9 1.1E-23 2.3E-28 173.0 21.5 235 4-265 184-423 (484)
122 KOG0270 WD40 repeat-containing 99.9 1.2E-23 2.6E-28 165.8 20.4 242 8-262 191-450 (463)
123 KOG0267 Microtubule severing p 99.9 1.4E-25 2.9E-30 186.2 9.6 228 7-264 2-229 (825)
124 KOG1034 Transcriptional repres 99.9 4.4E-24 9.4E-29 162.7 16.8 246 2-259 94-381 (385)
125 KOG0275 Conserved WD40 repeat- 99.9 7.4E-25 1.6E-29 167.0 12.1 209 44-260 211-466 (508)
126 KOG4378 Nuclear protein COP1 [ 99.9 7E-24 1.5E-28 169.6 17.6 221 2-243 84-305 (673)
127 KOG0302 Ribosome Assembly prot 99.9 5.6E-24 1.2E-28 164.7 16.5 214 42-260 147-377 (440)
128 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.2E-21 2.6E-26 157.7 30.0 242 2-265 35-283 (300)
129 KOG2106 Uncharacterized conser 99.9 2.2E-22 4.7E-27 161.3 24.1 237 1-261 250-521 (626)
130 KOG0307 Vesicle coat complex C 99.9 4.5E-24 9.7E-29 185.2 13.9 250 2-264 69-330 (1049)
131 KOG1332 Vesicle coat complex C 99.9 1.1E-23 2.3E-28 154.6 12.7 214 39-261 4-241 (299)
132 KOG0321 WD40 repeat-containing 99.9 4.1E-23 9E-28 169.5 17.4 250 1-260 104-390 (720)
133 KOG1063 RNA polymerase II elon 99.9 1.4E-22 2.9E-27 167.8 20.3 248 2-263 321-650 (764)
134 KOG0293 WD40 repeat-containing 99.9 1.5E-22 3.2E-27 158.6 18.9 209 39-261 217-425 (519)
135 KOG4328 WD40 protein [Function 99.9 1.4E-22 3E-27 160.5 18.9 251 2-259 191-493 (498)
136 KOG1408 WD40 repeat protein [F 99.9 2.1E-22 4.6E-27 167.5 20.4 242 11-260 394-670 (1080)
137 KOG2106 Uncharacterized conser 99.9 3.4E-21 7.3E-26 154.5 25.4 235 2-263 205-479 (626)
138 KOG0294 WD40 repeat-containing 99.9 6.4E-22 1.4E-26 150.1 20.0 194 5-217 49-283 (362)
139 KOG0642 Cell-cycle nuclear pro 99.9 6.2E-23 1.4E-27 166.3 15.0 248 3-260 300-560 (577)
140 KOG0303 Actin-binding protein 99.9 2.2E-22 4.7E-27 156.9 17.3 216 39-262 74-295 (472)
141 KOG2048 WD40 repeat protein [G 99.9 6.1E-21 1.3E-25 157.7 25.9 241 2-261 30-275 (691)
142 KOG2919 Guanine nucleotide-bin 99.9 1.5E-21 3.3E-26 148.7 20.7 248 2-262 54-328 (406)
143 KOG2445 Nuclear pore complex c 99.9 2.7E-21 5.8E-26 146.4 21.1 219 42-264 9-259 (361)
144 KOG2096 WD40 repeat protein [G 99.9 1.1E-21 2.3E-26 149.3 18.7 211 40-261 80-308 (420)
145 KOG0270 WD40 repeat-containing 99.9 5.2E-22 1.1E-26 156.7 17.6 197 9-220 256-454 (463)
146 KOG0268 Sof1-like rRNA process 99.9 3.9E-23 8.4E-28 159.4 10.6 160 45-215 186-345 (433)
147 KOG0646 WD40 repeat protein [G 99.9 3.8E-21 8.2E-26 152.7 20.9 224 2-244 86-332 (476)
148 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 6.9E-20 1.5E-24 147.4 28.6 232 9-262 1-238 (300)
149 KOG1009 Chromatin assembly com 99.9 1.6E-21 3.4E-26 152.5 18.0 254 2-261 18-372 (434)
150 KOG1539 WD repeat protein [Gen 99.9 1.1E-20 2.3E-25 159.6 22.2 247 2-260 249-605 (910)
151 KOG1188 WD40 repeat protein [G 99.9 4.7E-21 1E-25 146.9 15.9 237 10-259 41-344 (376)
152 KOG0649 WD40 repeat protein [G 99.9 1.1E-19 2.4E-24 133.7 21.7 245 2-263 15-276 (325)
153 KOG1539 WD repeat protein [Gen 99.9 3.8E-20 8.2E-25 156.3 21.9 227 16-259 419-646 (910)
154 KOG1274 WD40 repeat protein [G 99.9 8.8E-20 1.9E-24 155.6 24.2 227 5-257 62-296 (933)
155 KOG4378 Nuclear protein COP1 [ 99.9 6.7E-21 1.4E-25 152.7 15.9 241 3-265 40-284 (673)
156 KOG1007 WD repeat protein TSSC 99.9 5.1E-20 1.1E-24 138.5 19.4 234 20-260 94-360 (370)
157 KOG4328 WD40 protein [Function 99.9 6.1E-21 1.3E-25 151.3 15.1 213 42-260 182-398 (498)
158 KOG1063 RNA polymerase II elon 99.9 1.7E-19 3.6E-24 149.8 23.4 254 2-264 59-394 (764)
159 KOG0303 Actin-binding protein 99.9 2.4E-19 5.2E-24 140.1 20.1 207 1-218 85-297 (472)
160 KOG1517 Guanine nucleotide bin 99.8 1.9E-19 4E-24 155.8 19.9 247 8-261 1122-1381(1387)
161 KOG1587 Cytoplasmic dynein int 99.8 5E-19 1.1E-23 149.4 21.9 252 1-261 246-516 (555)
162 KOG1538 Uncharacterized conser 99.8 2.7E-19 5.9E-24 148.4 19.4 232 2-260 17-292 (1081)
163 KOG2055 WD40 repeat protein [G 99.8 4.7E-19 1E-23 140.9 18.7 202 46-260 213-416 (514)
164 KOG0322 G-protein beta subunit 99.8 3E-19 6.6E-24 132.7 15.9 243 3-260 20-322 (323)
165 KOG4227 WD40 repeat protein [G 99.8 1.7E-18 3.8E-23 135.5 19.5 253 2-260 61-386 (609)
166 KOG0290 Conserved WD40 repeat- 99.8 6.3E-19 1.4E-23 132.8 16.1 244 10-264 60-321 (364)
167 KOG1273 WD40 repeat protein [G 99.8 2.3E-18 5E-23 131.1 19.3 199 49-261 26-226 (405)
168 KOG2919 Guanine nucleotide-bin 99.8 1.2E-18 2.6E-23 133.1 17.2 232 6-252 120-361 (406)
169 KOG2048 WD40 repeat protein [G 99.8 1.1E-17 2.5E-22 138.6 23.4 240 2-262 74-320 (691)
170 KOG1445 Tumor-specific antigen 99.8 7.8E-19 1.7E-23 144.9 15.8 246 5-260 587-843 (1012)
171 COG2319 FOG: WD40 repeat [Gene 99.8 1.6E-16 3.4E-21 132.8 30.2 240 2-263 70-316 (466)
172 KOG0650 WD40 repeat nucleolar 99.8 1.1E-17 2.4E-22 137.1 20.7 206 39-261 393-637 (733)
173 KOG0307 Vesicle coat complex C 99.8 8.4E-19 1.8E-23 152.9 14.6 203 2-217 121-329 (1049)
174 KOG1517 Guanine nucleotide bin 99.8 1.3E-17 2.8E-22 144.7 21.4 250 3-264 1070-1336(1387)
175 KOG1007 WD repeat protein TSSC 99.8 8.9E-18 1.9E-22 126.5 17.4 207 2-214 128-360 (370)
176 KOG1034 Transcriptional repres 99.8 5.4E-18 1.2E-22 129.7 16.2 217 41-263 33-281 (385)
177 COG2319 FOG: WD40 repeat [Gene 99.8 7.1E-16 1.5E-20 128.8 29.8 237 6-263 119-361 (466)
178 KOG0650 WD40 repeat nucleolar 99.8 8.6E-18 1.9E-22 137.7 16.9 239 2-259 405-678 (733)
179 KOG0290 Conserved WD40 repeat- 99.8 6.2E-17 1.3E-21 122.1 19.3 240 3-256 102-360 (364)
180 PRK11028 6-phosphogluconolacto 99.8 4.9E-16 1.1E-20 127.0 26.5 245 3-261 40-304 (330)
181 KOG0771 Prolactin regulatory e 99.8 1.1E-17 2.4E-22 131.8 15.6 201 50-262 148-355 (398)
182 KOG1524 WD40 repeat-containing 99.8 1.4E-17 3E-22 135.1 15.6 208 9-257 75-282 (737)
183 KOG1310 WD40 repeat protein [G 99.8 3.4E-17 7.4E-22 133.2 17.3 222 38-264 42-306 (758)
184 KOG0771 Prolactin regulatory e 99.8 2.4E-17 5.3E-22 129.8 15.5 199 2-216 149-355 (398)
185 KOG1445 Tumor-specific antigen 99.8 1.1E-17 2.4E-22 138.2 12.8 207 1-215 631-844 (1012)
186 PRK01742 tolB translocation pr 99.7 1.4E-15 3E-20 128.4 22.4 214 18-260 183-400 (429)
187 KOG1188 WD40 repeat protein [G 99.7 3E-16 6.5E-21 120.8 16.4 193 60-262 41-243 (376)
188 PRK11028 6-phosphogluconolacto 99.7 9E-15 1.9E-19 119.6 26.0 237 11-260 4-257 (330)
189 KOG1963 WD40 repeat protein [G 99.7 5.4E-15 1.2E-19 126.3 24.3 242 4-260 23-374 (792)
190 KOG0644 Uncharacterized conser 99.7 1.7E-17 3.7E-22 140.7 8.9 228 1-260 194-425 (1113)
191 KOG2394 WD40 protein DMR-N9 [G 99.7 5.2E-16 1.1E-20 126.0 16.4 198 7-241 183-384 (636)
192 KOG1009 Chromatin assembly com 99.7 1.2E-16 2.5E-21 125.5 12.2 197 47-250 14-249 (434)
193 KOG2110 Uncharacterized conser 99.7 7.5E-14 1.6E-18 108.8 26.3 229 4-261 12-248 (391)
194 PRK01742 tolB translocation pr 99.7 2.1E-15 4.5E-20 127.3 19.1 212 2-242 208-426 (429)
195 PF08662 eIF2A: Eukaryotic tra 99.7 9.3E-15 2E-19 109.6 19.5 114 137-264 58-182 (194)
196 KOG2110 Uncharacterized conser 99.7 1.8E-13 3.8E-18 106.7 26.0 159 46-215 87-248 (391)
197 KOG0642 Cell-cycle nuclear pro 99.7 1.6E-15 3.5E-20 123.7 14.5 208 1-219 348-565 (577)
198 KOG1587 Cytoplasmic dynein int 99.7 1.1E-14 2.5E-19 123.3 20.0 233 18-262 221-473 (555)
199 KOG1310 WD40 repeat protein [G 99.7 2.1E-15 4.6E-20 122.9 14.9 213 2-220 55-308 (758)
200 KOG3881 Uncharacterized conser 99.7 3.9E-14 8.5E-19 111.0 20.8 232 10-262 70-321 (412)
201 KOG1334 WD40 repeat protein [G 99.7 2E-15 4.3E-20 121.3 13.9 253 2-262 147-467 (559)
202 KOG1524 WD40 repeat-containing 99.7 6.4E-15 1.4E-19 119.9 15.7 174 2-211 109-282 (737)
203 KOG0322 G-protein beta subunit 99.7 7E-15 1.5E-19 109.8 14.6 165 44-214 148-322 (323)
204 KOG1240 Protein kinase contain 99.7 4.7E-14 1E-18 124.6 22.0 255 3-262 1054-1335(1431)
205 KOG1523 Actin-related protein 99.6 3.5E-14 7.6E-19 108.7 17.8 213 46-263 10-238 (361)
206 KOG2111 Uncharacterized conser 99.6 4.9E-13 1.1E-17 102.4 23.5 236 2-262 10-257 (346)
207 KOG4227 WD40 repeat protein [G 99.6 2.3E-14 5E-19 112.7 16.4 212 39-262 49-275 (609)
208 KOG1523 Actin-related protein 99.6 2.1E-13 4.6E-18 104.5 20.8 241 2-258 15-275 (361)
209 KOG1963 WD40 repeat protein [G 99.6 2.9E-13 6.2E-18 115.9 23.7 249 2-262 210-539 (792)
210 KOG2139 WD40 repeat protein [G 99.6 7.5E-14 1.6E-18 108.6 18.3 194 48-260 100-308 (445)
211 KOG3881 Uncharacterized conser 99.6 1.3E-13 2.9E-18 108.1 19.2 219 11-242 117-342 (412)
212 KOG1538 Uncharacterized conser 99.6 3.2E-14 6.8E-19 118.8 14.8 195 48-263 14-213 (1081)
213 KOG1240 Protein kinase contain 99.6 1.3E-13 2.8E-18 121.9 19.3 218 37-261 1039-1273(1431)
214 KOG1272 WD40-repeat-containing 99.6 1.2E-14 2.5E-19 116.3 11.7 236 2-254 134-402 (545)
215 PRK03629 tolB translocation pr 99.6 4E-13 8.8E-18 113.3 21.6 212 2-241 203-427 (429)
216 KOG2111 Uncharacterized conser 99.6 4E-12 8.6E-17 97.5 24.1 180 18-216 74-257 (346)
217 PRK02889 tolB translocation pr 99.6 2.1E-12 4.6E-17 109.0 25.0 193 42-253 191-392 (427)
218 PRK05137 tolB translocation pr 99.6 4.1E-12 8.9E-17 107.6 25.9 215 19-262 182-413 (435)
219 PRK04922 tolB translocation pr 99.6 1.2E-12 2.6E-17 110.7 21.4 212 2-241 208-432 (433)
220 PRK03629 tolB translocation pr 99.6 5.2E-12 1.1E-16 106.6 25.1 216 20-263 180-408 (429)
221 KOG2139 WD40 repeat protein [G 99.6 2.1E-12 4.6E-17 100.7 20.4 234 3-254 104-368 (445)
222 KOG4497 Uncharacterized conser 99.6 7.3E-14 1.6E-18 107.6 12.1 221 3-258 14-237 (447)
223 PF02239 Cytochrom_D1: Cytochr 99.6 4E-11 8.6E-16 98.7 28.9 251 3-265 42-351 (369)
224 PF08662 eIF2A: Eukaryotic tra 99.6 1.5E-12 3.2E-17 97.7 18.7 154 2-173 10-183 (194)
225 KOG1354 Serine/threonine prote 99.5 8.3E-13 1.8E-17 102.3 17.2 253 2-260 30-358 (433)
226 PRK04922 tolB translocation pr 99.5 5.2E-12 1.1E-16 106.9 23.1 215 19-262 184-412 (433)
227 KOG1272 WD40-repeat-containing 99.5 2E-14 4.3E-19 115.0 7.8 195 50-265 133-327 (545)
228 PRK02889 tolB translocation pr 99.5 3E-12 6.4E-17 108.1 19.8 214 2-241 200-424 (427)
229 KOG1334 WD40 repeat protein [G 99.5 9.1E-13 2E-17 106.3 15.0 218 38-260 134-423 (559)
230 KOG0649 WD40 repeat protein [G 99.5 1E-12 2.2E-17 97.3 14.1 157 97-261 13-186 (325)
231 KOG2394 WD40 protein DMR-N9 [G 99.5 7.3E-13 1.6E-17 108.0 14.2 178 62-264 188-365 (636)
232 KOG0644 Uncharacterized conser 99.5 3.1E-14 6.6E-19 121.3 6.1 164 38-214 182-345 (1113)
233 KOG0974 WD-repeat protein WDR6 99.5 2.9E-12 6.3E-17 111.7 18.1 186 60-263 100-290 (967)
234 PRK05137 tolB translocation pr 99.5 1.1E-11 2.4E-16 105.0 20.6 211 2-241 206-432 (435)
235 TIGR02800 propeller_TolB tol-p 99.5 6.5E-11 1.4E-15 100.0 25.2 201 41-262 184-398 (417)
236 PF10282 Lactonase: Lactonase, 99.4 8.8E-10 1.9E-14 90.6 28.8 253 3-261 42-322 (345)
237 KOG1064 RAVE (regulator of V-A 99.4 1.1E-12 2.5E-17 119.8 12.4 193 44-264 2206-2401(2439)
238 KOG2321 WD40 repeat protein [G 99.4 3.3E-11 7.1E-16 99.3 19.1 236 2-260 56-301 (703)
239 KOG4547 WD40 repeat-containing 99.4 6.4E-11 1.4E-15 97.8 19.9 190 58-261 4-220 (541)
240 TIGR02800 propeller_TolB tol-p 99.4 8.6E-11 1.9E-15 99.3 20.1 190 2-214 194-396 (417)
241 KOG4497 Uncharacterized conser 99.4 3.7E-10 8E-15 87.5 21.0 240 3-263 54-393 (447)
242 KOG0974 WD-repeat protein WDR6 99.4 4.2E-11 9.1E-16 104.7 17.2 192 5-216 95-289 (967)
243 PRK04792 tolB translocation pr 99.4 3.9E-10 8.4E-15 95.7 21.8 212 2-241 222-446 (448)
244 PRK04792 tolB translocation pr 99.3 1.9E-09 4.1E-14 91.5 25.3 201 42-262 213-426 (448)
245 PRK00178 tolB translocation pr 99.3 1.6E-09 3.4E-14 91.9 24.5 201 42-262 194-407 (430)
246 PRK00178 tolB translocation pr 99.3 9.1E-10 2E-14 93.4 21.5 212 2-241 203-427 (430)
247 KOG0280 Uncharacterized conser 99.3 4.8E-10 1E-14 85.5 17.3 237 8-258 83-330 (339)
248 KOG0280 Uncharacterized conser 99.3 1E-10 2.2E-15 89.1 13.6 161 1-170 125-286 (339)
249 PF02239 Cytochrom_D1: Cytochr 99.3 2E-08 4.4E-13 82.8 28.3 190 11-219 8-206 (369)
250 KOG1064 RAVE (regulator of V-A 99.3 1.5E-11 3.3E-16 112.8 10.0 187 6-223 2217-2406(2439)
251 PLN02919 haloacid dehalogenase 99.3 2.5E-08 5.4E-13 92.5 30.7 258 3-263 573-890 (1057)
252 KOG1354 Serine/threonine prote 99.3 3E-10 6.5E-15 88.4 14.7 217 46-265 25-305 (433)
253 PRK01029 tolB translocation pr 99.3 7.4E-09 1.6E-13 87.4 23.7 216 3-242 190-425 (428)
254 KOG2315 Predicted translation 99.3 6.9E-09 1.5E-13 85.6 22.4 235 3-264 131-393 (566)
255 KOG4714 Nucleoporin [Nuclear s 99.2 1.6E-10 3.5E-15 86.6 11.8 192 8-213 100-316 (319)
256 KOG0309 Conserved WD40 repeat- 99.2 5.1E-11 1.1E-15 101.0 9.9 232 12-261 85-339 (1081)
257 KOG1409 Uncharacterized conser 99.2 1.6E-09 3.5E-14 84.4 16.6 196 3-215 74-270 (404)
258 KOG4190 Uncharacterized conser 99.2 1.2E-10 2.5E-15 96.1 10.4 161 8-174 746-912 (1034)
259 KOG4190 Uncharacterized conser 99.2 3.9E-11 8.4E-16 98.9 7.7 207 39-258 728-945 (1034)
260 KOG4547 WD40 repeat-containing 99.2 2.4E-08 5.1E-13 82.9 23.8 193 6-214 2-219 (541)
261 KOG2321 WD40 repeat protein [G 99.2 9.4E-10 2E-14 90.9 15.6 188 12-215 148-343 (703)
262 KOG2041 WD40 repeat protein [G 99.2 1.1E-09 2.4E-14 92.9 16.2 238 2-252 19-279 (1189)
263 PF10282 Lactonase: Lactonase, 99.2 1.4E-07 3E-12 77.7 28.0 234 19-260 13-274 (345)
264 KOG1409 Uncharacterized conser 99.2 1.3E-09 2.9E-14 84.8 14.8 219 37-264 15-273 (404)
265 KOG4532 WD40-like repeat conta 99.2 1.3E-08 2.9E-13 76.9 19.3 242 9-265 84-335 (344)
266 PRK01029 tolB translocation pr 99.2 4.4E-08 9.6E-13 82.7 25.0 202 45-262 183-404 (428)
267 COG5170 CDC55 Serine/threonine 99.1 4.2E-09 9E-14 81.2 14.8 253 2-259 31-365 (460)
268 KOG3914 WD repeat protein WDR4 99.1 1.9E-09 4.1E-14 85.5 12.4 161 4-175 69-230 (390)
269 TIGR02658 TTQ_MADH_Hv methylam 99.1 1.2E-06 2.6E-11 71.2 26.6 242 5-264 53-333 (352)
270 PLN02919 haloacid dehalogenase 99.0 3.1E-07 6.8E-12 85.4 26.2 215 3-219 629-892 (1057)
271 COG4946 Uncharacterized protei 99.0 2.5E-07 5.5E-12 75.4 21.7 224 4-249 273-506 (668)
272 COG2706 3-carboxymuconate cycl 99.0 3.3E-06 7.2E-11 66.7 26.7 251 3-261 45-321 (346)
273 COG5354 Uncharacterized protei 99.0 3.4E-07 7.4E-12 75.1 21.7 236 3-263 38-397 (561)
274 COG2706 3-carboxymuconate cycl 99.0 2.9E-06 6.3E-11 67.0 26.1 232 18-260 15-273 (346)
275 KOG4532 WD40-like repeat conta 99.0 2.6E-07 5.7E-12 70.1 19.4 192 60-263 85-284 (344)
276 KOG1832 HIV-1 Vpr-binding prot 99.0 3.8E-10 8.3E-15 97.7 4.5 201 38-264 1093-1294(1516)
277 PF04762 IKI3: IKI3 family; I 99.0 2.2E-07 4.7E-12 85.0 22.0 235 2-264 80-336 (928)
278 COG5170 CDC55 Serine/threonine 99.0 2.1E-08 4.6E-13 77.4 13.1 214 46-263 26-311 (460)
279 KOG2695 WD40 repeat protein [G 99.0 3.9E-09 8.4E-14 82.4 8.7 178 52-240 217-401 (425)
280 KOG2695 WD40 repeat protein [G 99.0 2E-09 4.4E-14 83.9 6.9 153 13-176 228-384 (425)
281 PRK04043 tolB translocation pr 98.9 2.7E-06 5.9E-11 71.6 25.7 194 48-263 189-402 (419)
282 PF00400 WD40: WD domain, G-be 98.9 7.5E-09 1.6E-13 56.2 6.0 37 130-166 3-39 (39)
283 PF15492 Nbas_N: Neuroblastoma 98.9 2E-06 4.3E-11 66.0 19.8 198 3-223 49-267 (282)
284 COG4946 Uncharacterized protei 98.8 8.8E-06 1.9E-10 66.7 23.9 193 55-263 275-479 (668)
285 KOG2314 Translation initiation 98.8 1.7E-06 3.7E-11 71.9 20.1 115 140-262 447-574 (698)
286 KOG2315 Predicted translation 98.8 2.4E-06 5.1E-11 71.1 20.3 180 15-215 190-390 (566)
287 KOG3914 WD repeat protein WDR4 98.8 1.2E-07 2.6E-12 75.4 12.2 102 113-221 128-229 (390)
288 PF00400 WD40: WD domain, G-be 98.8 1.8E-08 3.9E-13 54.7 5.2 32 228-259 8-39 (39)
289 KOG4714 Nucleoporin [Nuclear s 98.8 5E-08 1.1E-12 73.5 8.2 145 108-261 102-254 (319)
290 KOG2041 WD40 repeat protein [G 98.8 3.8E-07 8.3E-12 78.0 14.2 164 45-216 13-187 (1189)
291 KOG1275 PAB-dependent poly(A) 98.8 2.1E-07 4.5E-12 81.4 12.9 181 61-259 149-340 (1118)
292 PRK04043 tolB translocation pr 98.7 1.1E-05 2.5E-10 67.9 21.8 189 2-215 192-400 (419)
293 PF08450 SGL: SMP-30/Gluconola 98.7 7.2E-05 1.6E-09 58.6 29.3 224 3-249 5-243 (246)
294 KOG0309 Conserved WD40 repeat- 98.7 2.4E-07 5.2E-12 79.4 11.0 225 4-244 31-258 (1081)
295 PF15492 Nbas_N: Neuroblastoma 98.7 3.8E-05 8.2E-10 59.2 21.2 236 3-265 3-263 (282)
296 KOG1832 HIV-1 Vpr-binding prot 98.6 5.6E-08 1.2E-12 84.8 4.7 207 2-247 1106-1317(1516)
297 PF04762 IKI3: IKI3 family; I 98.6 6.9E-05 1.5E-09 69.0 24.1 228 2-260 214-455 (928)
298 KOG0882 Cyclophilin-related pe 98.5 1.8E-06 3.9E-11 70.1 11.9 202 8-220 19-236 (558)
299 TIGR03300 assembly_YfgL outer 98.5 4.4E-05 9.5E-10 63.8 20.1 178 61-258 192-376 (377)
300 KOG0882 Cyclophilin-related pe 98.5 4.2E-06 9.2E-11 68.0 12.5 208 44-261 7-231 (558)
301 KOG1920 IkappaB kinase complex 98.5 3.3E-05 7.2E-10 70.1 19.1 236 3-264 74-325 (1265)
302 PF13360 PQQ_2: PQQ-like domai 98.5 0.00031 6.7E-09 54.6 24.5 189 60-265 37-234 (238)
303 KOG1008 Uncharacterized conser 98.5 4E-08 8.7E-13 82.7 0.9 197 10-215 71-275 (783)
304 KOG2066 Vacuolar assembly/sort 98.5 3.9E-05 8.5E-10 66.8 18.6 179 9-215 49-233 (846)
305 KOG1912 WD40 repeat protein [G 98.5 6.6E-05 1.4E-09 65.3 19.6 237 3-259 21-302 (1062)
306 KOG1275 PAB-dependent poly(A) 98.5 8E-06 1.7E-10 71.9 14.4 183 8-213 146-340 (1118)
307 TIGR03300 assembly_YfgL outer 98.5 0.00037 8.1E-09 58.2 24.3 184 61-261 147-338 (377)
308 TIGR02658 TTQ_MADH_Hv methylam 98.4 0.0006 1.3E-08 55.8 27.0 233 19-265 27-291 (352)
309 KOG1645 RING-finger-containing 98.4 2E-05 4.3E-10 63.3 14.6 86 39-130 186-271 (463)
310 KOG1008 Uncharacterized conser 98.4 1.1E-07 2.4E-12 80.1 2.1 205 46-260 56-274 (783)
311 PF08450 SGL: SMP-30/Gluconola 98.4 0.00056 1.2E-08 53.6 26.0 194 52-263 5-215 (246)
312 PF11768 DUF3312: Protein of u 98.4 4.2E-05 9.1E-10 64.5 16.2 69 186-260 260-328 (545)
313 PF11768 DUF3312: Protein of u 98.4 0.00022 4.7E-09 60.4 20.0 74 136-216 257-330 (545)
314 KOG2114 Vacuolar assembly/sort 98.3 0.00057 1.2E-08 60.3 22.3 201 4-221 30-249 (933)
315 KOG2066 Vacuolar assembly/sort 98.3 1.8E-05 4E-10 68.7 13.2 147 96-266 41-192 (846)
316 KOG2114 Vacuolar assembly/sort 98.2 8.2E-05 1.8E-09 65.3 14.6 156 105-264 33-204 (933)
317 PF07433 DUF1513: Protein of u 98.2 0.0018 4E-08 51.4 23.1 201 51-260 9-246 (305)
318 PF08596 Lgl_C: Lethal giant l 98.2 0.0018 3.9E-08 54.1 21.8 249 3-259 7-333 (395)
319 PF07433 DUF1513: Protein of u 98.2 0.002 4.4E-08 51.1 24.5 228 3-252 10-277 (305)
320 PF06977 SdiA-regulated: SdiA- 98.1 0.002 4.3E-08 50.1 21.9 206 41-255 16-244 (248)
321 KOG1645 RING-finger-containing 98.1 0.00026 5.7E-09 57.1 15.3 70 2-79 198-268 (463)
322 COG5354 Uncharacterized protei 98.1 0.0017 3.6E-08 54.2 19.7 138 93-252 273-420 (561)
323 KOG3617 WD40 and TPR repeat-co 98.1 8E-06 1.7E-10 71.5 5.7 107 144-261 21-131 (1416)
324 PF13360 PQQ_2: PQQ-like domai 98.0 0.0039 8.5E-08 48.3 19.8 147 68-223 2-148 (238)
325 PF08553 VID27: VID27 cytoplas 98.0 0.00045 9.7E-09 61.9 15.1 140 64-214 499-646 (794)
326 KOG1912 WD40 repeat protein [G 97.9 0.00015 3.2E-09 63.3 11.2 248 3-263 236-553 (1062)
327 PF08553 VID27: VID27 cytoplas 97.9 0.0013 2.8E-08 59.1 16.0 146 106-260 492-646 (794)
328 KOG3621 WD40 repeat-containing 97.8 0.00046 9.9E-09 59.6 11.4 110 105-216 43-155 (726)
329 smart00320 WD40 WD40 repeats. 97.8 9.2E-05 2E-09 38.7 5.0 36 131-166 5-40 (40)
330 KOG3621 WD40 repeat-containing 97.7 0.00047 1E-08 59.5 10.7 114 145-262 40-155 (726)
331 smart00320 WD40 WD40 repeats. 97.7 0.0001 2.2E-09 38.6 4.1 31 229-259 10-40 (40)
332 KOG3617 WD40 and TPR repeat-co 97.6 0.00033 7.1E-09 61.9 8.6 108 52-169 21-132 (1416)
333 PRK02888 nitrous-oxide reducta 97.6 0.028 6.1E-07 49.2 19.6 98 116-216 295-405 (635)
334 PRK11138 outer membrane biogen 97.5 0.043 9.2E-07 46.3 22.1 179 61-259 207-392 (394)
335 PF12894 Apc4_WD40: Anaphase-p 97.5 0.00041 8.9E-09 38.7 5.3 33 230-262 10-42 (47)
336 KOG4640 Anaphase-promoting com 97.5 0.00094 2E-08 57.0 9.5 93 139-240 21-114 (665)
337 PF03178 CPSF_A: CPSF A subuni 97.5 0.037 8E-07 45.2 18.9 134 117-261 62-202 (321)
338 PRK11138 outer membrane biogen 97.5 0.048 1E-06 45.9 24.0 225 9-260 120-352 (394)
339 KOG2395 Protein involved in va 97.5 0.022 4.8E-07 48.2 16.7 143 109-259 348-498 (644)
340 KOG2314 Translation initiation 97.5 0.0038 8.2E-08 52.8 12.3 139 98-248 214-363 (698)
341 COG0823 TolB Periplasmic compo 97.4 0.01 2.2E-07 50.3 15.0 181 4-204 199-388 (425)
342 KOG2444 WD40 repeat protein [G 97.4 0.00041 8.8E-09 52.0 5.4 142 109-262 32-178 (238)
343 COG0823 TolB Periplasmic compo 97.4 0.02 4.4E-07 48.4 16.2 159 48-218 194-361 (425)
344 KOG4640 Anaphase-promoting com 97.3 0.0011 2.5E-08 56.6 8.1 71 187-262 22-93 (665)
345 PF14783 BBS2_Mid: Ciliary BBS 97.3 0.023 4.9E-07 38.0 14.1 97 53-163 9-109 (111)
346 PF03178 CPSF_A: CPSF A subuni 97.3 0.07 1.5E-06 43.6 21.3 185 59-258 42-262 (321)
347 KOG1920 IkappaB kinase complex 97.3 0.028 6E-07 52.1 16.4 163 95-265 69-278 (1265)
348 KOG2079 Vacuolar assembly/sort 97.2 0.0023 4.9E-08 58.1 9.0 104 149-259 98-201 (1206)
349 PF04841 Vps16_N: Vps16, N-ter 97.2 0.11 2.4E-06 44.0 24.6 33 186-218 217-249 (410)
350 PF04053 Coatomer_WDAD: Coatom 97.2 0.035 7.6E-07 47.3 15.6 138 96-260 34-172 (443)
351 KOG4649 PQQ (pyrrolo-quinoline 97.2 0.075 1.6E-06 41.1 15.8 106 109-222 25-130 (354)
352 PF04053 Coatomer_WDAD: Coatom 97.1 0.14 3E-06 43.7 20.1 213 2-260 37-261 (443)
353 PF08596 Lgl_C: Lethal giant l 97.1 0.13 2.8E-06 43.2 21.1 210 48-266 3-295 (395)
354 PF14783 BBS2_Mid: Ciliary BBS 97.0 0.051 1.1E-06 36.3 14.3 93 105-210 13-109 (111)
355 KOG2444 WD40 repeat protein [G 97.0 0.003 6.4E-08 47.5 6.4 106 59-169 70-178 (238)
356 COG3391 Uncharacterized conser 96.9 0.19 4.1E-06 42.2 23.6 199 51-261 78-283 (381)
357 PRK02888 nitrous-oxide reducta 96.8 0.06 1.3E-06 47.2 13.7 95 68-169 295-405 (635)
358 PF04841 Vps16_N: Vps16, N-ter 96.8 0.28 6E-06 41.6 21.2 170 70-259 62-244 (410)
359 PF12894 Apc4_WD40: Anaphase-p 96.7 0.0063 1.4E-07 34.0 4.9 33 138-171 11-43 (47)
360 PF06977 SdiA-regulated: SdiA- 96.7 0.2 4.3E-06 39.2 18.5 170 92-263 19-203 (248)
361 KOG2079 Vacuolar assembly/sort 96.6 0.012 2.5E-07 53.8 8.4 102 109-214 101-202 (1206)
362 PRK13616 lipoprotein LpqB; Pro 96.6 0.23 5E-06 44.1 16.0 158 96-259 351-523 (591)
363 PF14870 PSII_BNR: Photosynthe 96.3 0.24 5.2E-06 39.9 13.1 109 138-252 144-253 (302)
364 PF00930 DPPIV_N: Dipeptidyl p 96.2 0.6 1.3E-05 38.7 17.5 234 6-260 1-265 (353)
365 PHA02713 hypothetical protein; 96.2 0.87 1.9E-05 40.4 18.5 64 149-217 463-535 (557)
366 PF06433 Me-amine-dh_H: Methyl 95.9 0.76 1.6E-05 37.5 20.5 166 52-225 140-330 (342)
367 PF12234 Rav1p_C: RAVE protein 95.8 0.58 1.3E-05 41.6 14.5 110 142-259 33-154 (631)
368 PHA02713 hypothetical protein; 95.8 1.2 2.7E-05 39.4 17.6 181 60-260 305-532 (557)
369 KOG2395 Protein involved in va 95.7 0.3 6.4E-06 41.8 11.7 116 49-168 378-500 (644)
370 PF00780 CNH: CNH domain; Int 95.7 0.83 1.8E-05 36.3 23.1 233 6-263 4-257 (275)
371 PF02897 Peptidase_S9_N: Proly 95.6 0.68 1.5E-05 39.3 14.2 101 142-251 127-246 (414)
372 PF14655 RAB3GAP2_N: Rab3 GTPa 95.6 0.41 8.8E-06 40.4 12.3 94 143-241 6-118 (415)
373 KOG4441 Proteins containing BT 95.6 1.6 3.5E-05 38.8 22.2 221 8-254 284-534 (571)
374 PF14727 PHTB1_N: PTHB1 N-term 95.5 1.3 2.8E-05 37.6 25.4 151 8-167 36-203 (418)
375 PF00780 CNH: CNH domain; Int 95.5 1 2.2E-05 35.8 19.7 145 59-218 7-168 (275)
376 COG3386 Gluconolactonase [Carb 95.5 1.1 2.4E-05 36.3 21.7 114 130-251 154-275 (307)
377 PF12234 Rav1p_C: RAVE protein 95.3 1.7 3.7E-05 38.7 15.5 103 108-214 42-155 (631)
378 PF10647 Gmad1: Lipoprotein Lp 95.2 1.2 2.6E-05 35.1 16.6 153 96-254 25-188 (253)
379 KOG2377 Uncharacterized conser 95.1 0.99 2.1E-05 38.1 12.7 105 137-247 65-169 (657)
380 PF10313 DUF2415: Uncharacteri 95.1 0.13 2.8E-06 27.9 5.1 32 47-78 1-34 (43)
381 KOG3630 Nuclear pore complex, 94.9 0.31 6.6E-06 45.5 10.0 136 109-250 116-262 (1405)
382 PF00930 DPPIV_N: Dipeptidyl p 94.8 1.9 4.2E-05 35.7 20.7 155 46-206 183-348 (353)
383 KOG4441 Proteins containing BT 94.8 2.7 5.9E-05 37.4 16.8 147 8-172 332-503 (571)
384 cd00216 PQQ_DH Dehydrogenases 94.8 2.6 5.6E-05 36.8 20.6 158 61-223 63-272 (488)
385 KOG1916 Nuclear protein, conta 94.7 0.053 1.1E-06 49.0 4.8 124 41-168 127-265 (1283)
386 PF07569 Hira: TUP1-like enhan 94.6 0.33 7E-06 37.3 8.3 68 192-260 17-94 (219)
387 COG3391 Uncharacterized conser 94.5 2.6 5.5E-05 35.5 24.2 201 3-222 79-290 (381)
388 PF07995 GSDH: Glucose / Sorbo 94.4 2.4 5.3E-05 34.8 21.6 60 196-255 270-329 (331)
389 PF14655 RAB3GAP2_N: Rab3 GTPa 94.3 2.9 6.3E-05 35.4 21.0 80 187-266 309-403 (415)
390 PF15390 DUF4613: Domain of un 94.2 3.5 7.7E-05 36.1 15.1 150 96-259 21-184 (671)
391 PF06433 Me-amine-dh_H: Methyl 94.2 2.6 5.7E-05 34.4 20.4 148 108-261 148-320 (342)
392 COG3386 Gluconolactonase [Carb 94.1 2.6 5.7E-05 34.2 18.8 193 54-262 32-244 (307)
393 PRK13616 lipoprotein LpqB; Pro 93.2 6 0.00013 35.4 18.9 113 138-256 447-563 (591)
394 PF08728 CRT10: CRT10; InterP 93.1 6.6 0.00014 35.7 16.6 110 58-167 113-245 (717)
395 PF07995 GSDH: Glucose / Sorbo 93.1 4.1 8.8E-05 33.6 12.7 107 141-251 4-133 (331)
396 PF10168 Nup88: Nuclear pore c 92.9 6.3 0.00014 36.1 14.5 77 186-262 85-180 (717)
397 COG3204 Uncharacterized protei 92.8 4.1 8.9E-05 32.5 13.5 125 136-264 83-213 (316)
398 KOG1897 Damage-specific DNA bi 92.8 8.4 0.00018 36.0 18.3 153 109-262 501-660 (1096)
399 KOG4649 PQQ (pyrrolo-quinoline 92.8 3.9 8.4E-05 32.1 20.8 108 56-173 20-128 (354)
400 KOG3630 Nuclear pore complex, 92.8 3.3 7.2E-05 39.2 12.3 102 98-202 159-260 (1405)
401 TIGR03118 PEPCTERM_chp_1 conse 92.6 4.5 9.8E-05 32.5 21.2 231 3-241 28-307 (336)
402 PHA03098 kelch-like protein; P 92.6 6.8 0.00015 34.6 19.4 144 59-216 343-512 (534)
403 cd00216 PQQ_DH Dehydrogenases 92.6 6.6 0.00014 34.3 21.7 159 60-222 111-326 (488)
404 COG5167 VID27 Protein involved 92.5 6.3 0.00014 34.1 12.8 139 109-259 482-630 (776)
405 PF10313 DUF2415: Uncharacteri 92.3 0.67 1.4E-05 25.2 4.7 30 232-261 1-33 (43)
406 COG3490 Uncharacterized protei 91.9 5.4 0.00012 31.8 13.3 95 100-204 73-180 (366)
407 KOG4460 Nuclear pore complex, 91.8 7.2 0.00016 33.8 12.4 26 141-166 106-131 (741)
408 PF14870 PSII_BNR: Photosynthe 91.8 6 0.00013 32.1 17.7 154 95-258 145-301 (302)
409 PF07569 Hira: TUP1-like enhan 91.6 1.3 2.8E-05 34.0 7.6 74 4-79 17-97 (219)
410 PF10168 Nup88: Nuclear pore c 91.2 12 0.00026 34.5 14.1 77 140-217 86-181 (717)
411 KOG1900 Nuclear pore complex, 91.1 5.7 0.00012 38.2 12.2 147 113-262 95-273 (1311)
412 TIGR03606 non_repeat_PQQ dehyd 91.1 9.4 0.0002 32.9 13.8 110 140-251 31-165 (454)
413 PF08728 CRT10: CRT10; InterP 91.0 2.7 5.8E-05 38.0 9.8 109 149-260 113-245 (717)
414 PF11715 Nup160: Nucleoporin N 90.0 1.7 3.8E-05 38.4 8.0 78 7-84 156-255 (547)
415 KOG2377 Uncharacterized conser 89.2 11 0.00024 32.2 11.3 155 5-169 30-186 (657)
416 KOG1916 Nuclear protein, conta 89.0 1.5 3.2E-05 40.3 6.5 141 117-259 153-321 (1283)
417 PF10647 Gmad1: Lipoprotein Lp 88.6 10 0.00022 29.8 13.9 101 140-250 25-130 (253)
418 COG3204 Uncharacterized protei 88.3 12 0.00025 30.1 18.7 208 49-263 45-265 (316)
419 PF11715 Nup160: Nucleoporin N 88.2 3.6 7.8E-05 36.5 8.7 34 141-174 217-254 (547)
420 PF14761 HPS3_N: Hermansky-Pud 88.2 9.8 0.00021 29.0 11.2 57 151-212 29-92 (215)
421 KOG4460 Nuclear pore complex, 87.9 7.3 0.00016 33.8 9.6 80 3-82 109-203 (741)
422 PHA03098 kelch-like protein; P 87.9 19 0.0004 31.9 19.8 103 60-171 296-417 (534)
423 KOG4499 Ca2+-binding protein R 87.2 12 0.00026 29.0 17.7 105 139-248 158-271 (310)
424 PF02897 Peptidase_S9_N: Proly 87.0 18 0.00039 30.7 26.8 223 3-245 129-384 (414)
425 KOG1897 Damage-specific DNA bi 86.9 28 0.0006 32.9 21.5 241 4-264 590-859 (1096)
426 COG3823 Glutamine cyclotransfe 86.6 12 0.00026 28.4 14.5 181 59-249 56-247 (262)
427 PF12657 TFIIIC_delta: Transcr 86.6 9.5 0.00021 28.0 8.8 30 232-261 86-121 (173)
428 KOG4499 Ca2+-binding protein R 86.2 14 0.0003 28.7 11.2 100 99-203 162-272 (310)
429 PF14727 PHTB1_N: PTHB1 N-term 85.9 21 0.00046 30.5 18.4 146 106-260 36-203 (418)
430 TIGR02604 Piru_Ver_Nterm putat 85.8 20 0.00043 30.0 16.0 104 139-249 72-201 (367)
431 PF05096 Glu_cyclase_2: Glutam 85.2 17 0.00037 28.8 25.4 191 47-249 45-249 (264)
432 PHA02790 Kelch-like protein; P 85.0 26 0.00055 30.6 20.1 100 59-171 319-426 (480)
433 PF15390 DUF4613: Domain of un 84.7 28 0.00061 30.9 16.8 117 95-215 57-186 (671)
434 TIGR02604 Piru_Ver_Nterm putat 84.5 23 0.00049 29.7 14.9 52 197-248 282-337 (367)
435 KOG2247 WD40 repeat-containing 84.4 0.16 3.4E-06 43.0 -1.6 138 102-253 42-180 (615)
436 TIGR03075 PQQ_enz_alc_DH PQQ-d 84.2 29 0.00064 30.7 21.9 195 61-260 71-332 (527)
437 PHA02790 Kelch-like protein; P 83.5 30 0.00064 30.2 19.1 180 59-260 272-469 (480)
438 TIGR03075 PQQ_enz_alc_DH PQQ-d 83.0 33 0.00072 30.4 22.4 157 61-220 122-338 (527)
439 PF14583 Pectate_lyase22: Olig 82.9 27 0.00059 29.3 25.0 156 97-259 190-379 (386)
440 KOG1900 Nuclear pore complex, 82.3 41 0.0009 32.8 12.4 155 51-216 83-273 (1311)
441 PF12768 Rax2: Cortical protei 81.3 26 0.00057 28.1 11.4 94 159-258 15-118 (281)
442 PF08801 Nucleoporin_N: Nup133 81.0 34 0.00074 29.2 13.5 29 233-261 191-219 (422)
443 COG5167 VID27 Protein involved 81.0 38 0.00082 29.7 11.5 61 106-168 572-632 (776)
444 PLN00033 photosystem II stabil 80.8 34 0.00074 29.1 12.7 110 142-259 242-354 (398)
445 PLN00033 photosystem II stabil 80.8 34 0.00074 29.1 17.9 115 138-258 280-396 (398)
446 PF14761 HPS3_N: Hermansky-Pud 79.3 26 0.00056 26.8 15.5 48 107-156 29-77 (215)
447 PF12341 DUF3639: Protein of u 78.3 6.1 0.00013 19.0 4.0 26 232-259 2-27 (27)
448 PF13449 Phytase-like: Esteras 78.0 37 0.00081 27.9 14.2 112 139-251 20-166 (326)
449 KOG2247 WD40 repeat-containing 77.8 0.34 7.3E-06 41.1 -1.8 145 3-164 40-184 (615)
450 PF05096 Glu_cyclase_2: Glutam 77.5 34 0.00074 27.1 13.2 111 141-263 47-159 (264)
451 PF01436 NHL: NHL repeat; Int 77.4 5.6 0.00012 19.1 3.2 24 235-258 5-28 (28)
452 PF11635 Med16: Mediator compl 77.0 65 0.0014 30.1 21.4 70 187-256 261-345 (753)
453 PF12657 TFIIIC_delta: Transcr 74.4 32 0.00068 25.3 8.7 30 48-77 87-121 (173)
454 COG3490 Uncharacterized protei 73.8 46 0.00099 26.8 17.2 100 51-156 72-179 (366)
455 smart00564 PQQ beta-propeller 72.3 10 0.00022 18.6 3.6 23 199-221 8-30 (33)
456 PF07676 PD40: WD40-like Beta 72.1 12 0.00026 19.4 4.5 27 48-74 10-38 (39)
457 PF05694 SBP56: 56kDa selenium 71.3 66 0.0014 27.7 15.1 132 68-204 221-392 (461)
458 TIGR02608 delta_60_rpt delta-6 70.8 17 0.00037 21.0 4.5 19 233-251 2-20 (55)
459 PF05694 SBP56: 56kDa selenium 70.3 70 0.0015 27.5 13.9 35 95-129 312-346 (461)
460 TIGR03118 PEPCTERM_chp_1 conse 68.7 63 0.0014 26.3 12.7 123 141-264 25-172 (336)
461 PF14781 BBS2_N: Ciliary BBSom 68.4 38 0.00083 23.8 12.9 108 145-259 5-123 (136)
462 PF14781 BBS2_N: Ciliary BBSom 67.4 40 0.00087 23.6 10.9 113 4-125 5-125 (136)
463 PF01011 PQQ: PQQ enzyme repea 67.0 16 0.00035 18.9 4.0 25 199-223 2-26 (38)
464 KOG3616 Selective LIM binding 66.5 20 0.00043 32.8 6.1 69 187-262 16-84 (1636)
465 COG4590 ABC-type uncharacteriz 65.8 70 0.0015 27.7 8.7 110 149-264 279-389 (733)
466 KOG2280 Vacuolar assembly/sort 64.7 1.2E+02 0.0026 28.1 14.6 29 232-260 217-245 (829)
467 PF03088 Str_synth: Strictosid 63.8 37 0.0008 21.9 6.5 42 203-249 33-74 (89)
468 PF10214 Rrn6: RNA polymerase 62.3 1.4E+02 0.003 28.1 18.6 115 96-216 147-277 (765)
469 PF13570 PQQ_3: PQQ-like domai 61.9 16 0.00035 19.0 3.2 20 196-215 20-39 (40)
470 PF08801 Nucleoporin_N: Nup133 60.5 1.1E+02 0.0023 26.2 12.8 30 187-216 191-220 (422)
471 TIGR02276 beta_rpt_yvtn 40-res 60.1 23 0.0005 18.3 4.8 28 56-83 1-28 (42)
472 COG5276 Uncharacterized conser 60.1 93 0.002 25.3 23.9 147 9-171 96-244 (370)
473 PF01731 Arylesterase: Arylest 58.4 46 0.001 21.3 6.2 27 234-260 56-83 (86)
474 KOG3616 Selective LIM binding 58.2 33 0.00071 31.6 5.9 67 139-213 15-81 (1636)
475 PF14583 Pectate_lyase22: Olig 55.4 1.3E+02 0.0028 25.5 13.5 75 102-176 43-118 (386)
476 TIGR03548 mutarot_permut cycli 54.9 1.2E+02 0.0025 24.8 19.6 64 106-171 123-197 (323)
477 PF03088 Str_synth: Strictosid 54.1 57 0.0012 21.0 6.1 42 157-204 34-75 (89)
478 COG4590 ABC-type uncharacteriz 50.1 1.7E+02 0.0038 25.4 8.8 105 107-218 280-389 (733)
479 KOG1896 mRNA cleavage and poly 49.4 2.8E+02 0.006 27.5 14.2 146 59-214 1046-1212(1366)
480 PF06739 SBBP: Beta-propeller 48.0 41 0.00088 17.5 3.5 21 187-207 14-34 (38)
481 PRK13684 Ycf48-like protein; P 48.0 1.6E+02 0.0034 24.3 16.4 155 95-259 173-329 (334)
482 COG5276 Uncharacterized conser 47.9 1.5E+02 0.0033 24.2 19.8 144 60-216 97-242 (370)
483 TIGR03547 muta_rot_YjhT mutatr 47.7 1.6E+02 0.0034 24.3 19.5 12 69-80 168-179 (346)
484 PF12768 Rax2: Cortical protei 45.6 1.6E+02 0.0035 23.7 14.1 95 20-123 17-121 (281)
485 PF11635 Med16: Mediator compl 45.2 98 0.0021 29.0 7.2 72 139-210 260-345 (753)
486 PF10584 Proteasome_A_N: Prote 44.1 8.4 0.00018 17.8 0.1 8 4-11 7-14 (23)
487 KOG3522 Predicted guanine nucl 43.3 2.3E+02 0.0051 26.7 8.8 148 61-218 549-700 (925)
488 PF14779 BBS1: Ciliary BBSome 42.4 1.6E+02 0.0035 23.3 7.0 58 198-258 196-255 (257)
489 KOG1896 mRNA cleavage and poly 42.1 3.6E+02 0.0078 26.8 12.2 112 138-260 1097-1212(1366)
490 KOG1520 Predicted alkaloid syn 42.0 2.1E+02 0.0046 24.1 10.7 51 203-258 195-247 (376)
491 PF13449 Phytase-like: Esteras 40.1 2.1E+02 0.0045 23.5 16.4 120 140-260 86-248 (326)
492 KOG2280 Vacuolar assembly/sort 39.8 3.2E+02 0.0069 25.5 16.5 35 138-172 216-250 (829)
493 PF03022 MRJP: Major royal jel 38.5 2.1E+02 0.0046 23.1 21.8 64 187-250 187-254 (287)
494 PRK13684 Ycf48-like protein; P 38.0 2.3E+02 0.005 23.4 24.0 111 138-256 172-283 (334)
495 KOG2109 WD40 repeat protein [G 37.7 15 0.00032 33.0 0.7 80 128-207 305-390 (788)
496 KOG3522 Predicted guanine nucl 37.6 1.5E+02 0.0032 27.9 6.8 136 109-259 549-695 (925)
497 PF07250 Glyoxal_oxid_N: Glyox 35.3 2.2E+02 0.0048 22.4 11.2 135 120-256 49-194 (243)
498 PF07250 Glyoxal_oxid_N: Glyox 35.2 2.2E+02 0.0048 22.4 10.0 24 5-28 74-100 (243)
499 KOG1983 Tomosyn and related SN 33.8 4.7E+02 0.01 25.7 12.8 23 240-262 243-265 (993)
500 PF10214 Rrn6: RNA polymerase 33.3 4.2E+02 0.0091 25.0 23.1 117 140-261 147-276 (765)
No 1
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.2e-47 Score=284.59 Aligned_cols=243 Identities=57% Similarity=1.091 Sum_probs=218.9
Q ss_pred CceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451 1 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL 80 (267)
Q Consensus 1 ~~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 80 (267)
|+|||+|.|+.+++||.|+.+.||++..+ ..++..+..+.+.+|++++.||.|.++ .+|+++|.|.+..+||+++++
T Consensus 101 MtCA~sPSg~~VAcGGLdN~Csiy~ls~~-d~~g~~~v~r~l~gHtgylScC~f~dD--~~ilT~SGD~TCalWDie~g~ 177 (343)
T KOG0286|consen 101 MTCAYSPSGNFVACGGLDNKCSIYPLSTR-DAEGNVRVSRELAGHTGYLSCCRFLDD--NHILTGSGDMTCALWDIETGQ 177 (343)
T ss_pred EEEEECCCCCeEEecCcCceeEEEecccc-cccccceeeeeecCccceeEEEEEcCC--CceEecCCCceEEEEEcccce
Confidence 78999999999999999999999999853 235556788899999999999999874 579999999999999999999
Q ss_pred eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCC
Q 024451 81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG 160 (267)
Q Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~ 160 (267)
+...| .+|...|.++++.|.+.+.|++|+.|+..++||++.+ ...+.+.+|+..|+++.|+|+|.-|++|++|+
T Consensus 178 ~~~~f-----~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~-~c~qtF~ghesDINsv~ffP~G~afatGSDD~ 251 (343)
T KOG0286|consen 178 QTQVF-----HGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG-QCVQTFEGHESDINSVRFFPSGDAFATGSDDA 251 (343)
T ss_pred EEEEe-----cCCcccEEEEecCCCCCCeEEecccccceeeeeccCc-ceeEeecccccccceEEEccCCCeeeecCCCc
Confidence 88877 4899999999999888899999999999999999965 56788999999999999999999999999999
Q ss_pred cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEEC
Q 024451 161 TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS 240 (267)
Q Consensus 161 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~ 240 (267)
+.|+||++..+++..+.. .+...+|++++||..|++|++|+.|..+.+||....+.+..+ .+|+.+|.|+..+
T Consensus 252 tcRlyDlRaD~~~a~ys~---~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L----~GHeNRvScl~~s 324 (343)
T KOG0286|consen 252 TCRLYDLRADQELAVYSH---DSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVL----AGHENRVSCLGVS 324 (343)
T ss_pred eeEEEeecCCcEEeeecc---CcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEe----eccCCeeEEEEEC
Confidence 999999999888776542 344568999999999999999999999999998777766544 5799999999999
Q ss_pred CCCCeEEEeECCCcEEEEe
Q 024451 241 ADGSALCTGSWDTNLKIWA 259 (267)
Q Consensus 241 p~~~~l~sgs~dg~i~~w~ 259 (267)
|||..+++||+|..+|||.
T Consensus 325 ~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 325 PDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred CCCcEEEecchhHheeecC
Confidence 9999999999999999994
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=9.7e-45 Score=282.29 Aligned_cols=240 Identities=29% Similarity=0.501 Sum_probs=209.6
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecC-CCeeEEEeeCCCeEEEEeCCCCe
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD-EDTHLITSSGDQTCVLWDITTGL 80 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~ 80 (267)
.|.|++++++|+|||++|.+++|+.+. .+...++.||+..|.++.|+|. ++..++||+.||++++|++.+..
T Consensus 180 ~~~fS~ds~~laT~swsG~~kvW~~~~-------~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~ 252 (459)
T KOG0272|consen 180 GCSFSRDSKHLATGSWSGLVKVWSVPQ-------CNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET 252 (459)
T ss_pred eeEeecCCCeEEEeecCCceeEeecCC-------cceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc
Confidence 478999999999999999999999864 2467889999999999999997 46689999999999999998765
Q ss_pred eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCC
Q 024451 81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG 160 (267)
Q Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~ 160 (267)
.+..+ .+|...|..++|+| ++++++|++.|.+-++||+++.. ......||...|.+++|+|+|.++++||-|.
T Consensus 253 ~l~~l-----~gH~~RVs~VafHP-sG~~L~TasfD~tWRlWD~~tk~-ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~ 325 (459)
T KOG0272|consen 253 PLQDL-----EGHLARVSRVAFHP-SGKFLGTASFDSTWRLWDLETKS-ELLLQEGHSKGVFSIAFQPDGSLAATGGLDS 325 (459)
T ss_pred chhhh-----hcchhhheeeeecC-CCceeeecccccchhhcccccch-hhHhhcccccccceeEecCCCceeeccCccc
Confidence 55443 47999999999997 57899999999999999998644 4455679999999999999999999999999
Q ss_pred cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEEC
Q 024451 161 TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS 240 (267)
Q Consensus 161 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~ 240 (267)
.-||||++++.++..+.. +..+|.++.|+|+|..|++|+.|+.++|||++....+..+ ..|...|+.++|+
T Consensus 326 ~~RvWDlRtgr~im~L~g-----H~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~i----pAH~nlVS~Vk~~ 396 (459)
T KOG0272|consen 326 LGRVWDLRTGRCIMFLAG-----HIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTI----PAHSNLVSQVKYS 396 (459)
T ss_pred hhheeecccCcEEEEecc-----cccceeeEeECCCceEEeecCCCCcEEEeeecccccceec----ccccchhhheEec
Confidence 999999999998876533 3457999999999999999999999999999877765544 5799999999999
Q ss_pred C-CCCeEEEeECCCcEEEEecCceE
Q 024451 241 A-DGSALCTGSWDTNLKIWAFGGYR 264 (267)
Q Consensus 241 p-~~~~l~sgs~dg~i~~w~~~~~~ 264 (267)
| .|.+|+|+|.|++++||.-.+.+
T Consensus 397 p~~g~fL~TasyD~t~kiWs~~~~~ 421 (459)
T KOG0272|consen 397 PQEGYFLVTASYDNTVKIWSTRTWS 421 (459)
T ss_pred ccCCeEEEEcccCcceeeecCCCcc
Confidence 9 78999999999999999754443
No 3
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.3e-43 Score=293.29 Aligned_cols=244 Identities=34% Similarity=0.613 Sum_probs=214.5
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCC-----------C-------------CCCCCcccccccCCeeeEEEEEEecC
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPT-----------D-------------KDGNLPVSRMLSGHKGYVSCCQYVPD 57 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~-----------~-------------~~~~~~~~~~~~~h~~~v~~~~~~~~ 57 (267)
|+.|++|+++||.|..|..|++|.+.+.. + ........+++.||.++|+.++|+|+
T Consensus 383 ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd 462 (707)
T KOG0263|consen 383 CAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPD 462 (707)
T ss_pred eEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeeccc
Confidence 56799999999999999999999988410 0 01112245668999999999999997
Q ss_pred CCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeecc
Q 024451 58 EDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH 137 (267)
Q Consensus 58 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~ 137 (267)
. ++|+++|+|+++|+|.+.+......+ .+|..+|..+.|+| .+.+|+|++.|++.++|... ..++.+.+.+|
T Consensus 463 ~-rfLlScSED~svRLWsl~t~s~~V~y-----~GH~~PVwdV~F~P-~GyYFatas~D~tArLWs~d-~~~PlRifagh 534 (707)
T KOG0263|consen 463 R-RFLLSCSEDSSVRLWSLDTWSCLVIY-----KGHLAPVWDVQFAP-RGYYFATASHDQTARLWSTD-HNKPLRIFAGH 534 (707)
T ss_pred c-cceeeccCCcceeeeecccceeEEEe-----cCCCcceeeEEecC-CceEEEecCCCceeeeeecc-cCCchhhhccc
Confidence 5 69999999999999999998777666 47999999999995 68899999999999999986 46789999999
Q ss_pred ccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCcc
Q 024451 138 EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA 217 (267)
Q Consensus 138 ~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~ 217 (267)
.+.|.|+.|||+.+|+++||.|.++|+||..++.....+.. +..+|.+++|||+|++|++|+.||.|.+||+..+
T Consensus 535 lsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~G-----H~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~ 609 (707)
T KOG0263|consen 535 LSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTG-----HKGPVTALAFSPCGRYLASGDEDGLIKIWDLANG 609 (707)
T ss_pred ccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecC-----CCCceEEEEEcCCCceEeecccCCcEEEEEcCCC
Confidence 99999999999999999999999999999999998877643 4567999999999999999999999999999988
Q ss_pred ceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451 218 KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 218 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~ 262 (267)
+.+..+ ..|.+.|.++.|+.+|..||+||.|.+|++||+..
T Consensus 610 ~~v~~l----~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 610 SLVKQL----KGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred cchhhh----hcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 877665 57899999999999999999999999999999753
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.4e-42 Score=267.56 Aligned_cols=237 Identities=30% Similarity=0.526 Sum_probs=198.8
Q ss_pred CceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecC----CCeeEEEeeCCCeEEEEeC
Q 024451 1 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD----EDTHLITSSGDQTCVLWDI 76 (267)
Q Consensus 1 ~~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~~~l~s~~~d~~v~iwd~ 76 (267)
+|++|+|||+.|++|+.||+|++||..... +..+.+++|+..|++++|.|- +.++|++++.||+|+|||+
T Consensus 161 lcvawsPDgk~iASG~~dg~I~lwdpktg~------~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~ 234 (480)
T KOG0271|consen 161 LCVAWSPDGKKIASGSKDGSIRLWDPKTGQ------QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDT 234 (480)
T ss_pred EEEEECCCcchhhccccCCeEEEecCCCCC------cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEc
Confidence 478999999999999999999999976532 356789999999999999762 3468999999999999999
Q ss_pred CCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCC------------------------------
Q 024451 77 TTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV------------------------------ 126 (267)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~------------------------------ 126 (267)
..+..+..+ .+|+..|+|++|- ...++.+++.|++|++|+...
T Consensus 235 ~~~~~~~~l-----sgHT~~VTCvrwG--G~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf 307 (480)
T KOG0271|consen 235 KLGTCVRTL-----SGHTASVTCVRWG--GEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAF 307 (480)
T ss_pred cCceEEEEe-----ccCccceEEEEEc--CCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhcccc
Confidence 887766555 4688888888875 345677888888888886532
Q ss_pred ------------------------------------------------cccceEEeeccccceeEEEEecCCCEEEEeeC
Q 024451 127 ------------------------------------------------ASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD 158 (267)
Q Consensus 127 ------------------------------------------------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 158 (267)
..+++..+.+|..-|+.+.|+||++++|+++-
T Consensus 308 ~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSF 387 (480)
T KOG0271|consen 308 DHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASF 387 (480)
T ss_pred ccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeec
Confidence 11223345688889999999999999999999
Q ss_pred CCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEE
Q 024451 159 DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLG 238 (267)
Q Consensus 159 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~ 238 (267)
|+.|++||-++++-+..+.. +...|..++|+.|.+.|++|+.|..+++||+++.+....+ .+|.+.|.++.
T Consensus 388 DkSVkLW~g~tGk~lasfRG-----Hv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DL----pGh~DEVf~vD 458 (480)
T KOG0271|consen 388 DKSVKLWDGRTGKFLASFRG-----HVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDL----PGHADEVFAVD 458 (480)
T ss_pred ccceeeeeCCCcchhhhhhh-----ccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccC----CCCCceEEEEE
Confidence 99999999999987766533 4457999999999999999999999999999887766544 57999999999
Q ss_pred ECCCCCeEEEeECCCcEEEEe
Q 024451 239 LSADGSALCTGSWDTNLKIWA 259 (267)
Q Consensus 239 ~~p~~~~l~sgs~dg~i~~w~ 259 (267)
|+|||..+++|+.|+.+++|.
T Consensus 459 wspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 459 WSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ecCCCceeecCCCceEEEeec
Confidence 999999999999999999995
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.2e-42 Score=266.47 Aligned_cols=243 Identities=27% Similarity=0.468 Sum_probs=203.9
Q ss_pred CceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451 1 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL 80 (267)
Q Consensus 1 ~~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 80 (267)
+|.+|+|+|+.|++|+-|.++|+||+...+ ...+.++|+.-|.|++|+|++ ..|++|+.||+|++||..++.
T Consensus 119 l~~~fsp~g~~l~tGsGD~TvR~WD~~TeT-------p~~t~KgH~~WVlcvawsPDg-k~iASG~~dg~I~lwdpktg~ 190 (480)
T KOG0271|consen 119 LSVQFSPTGSRLVTGSGDTTVRLWDLDTET-------PLFTCKGHKNWVLCVAWSPDG-KKIASGSKDGSIRLWDPKTGQ 190 (480)
T ss_pred EEEEecCCCceEEecCCCceEEeeccCCCC-------cceeecCCccEEEEEEECCCc-chhhccccCCeEEEecCCCCC
Confidence 478899999999999999999999998744 467789999999999999986 589999999999999998886
Q ss_pred eEEEeCCccccCCccceEEEEEeC----CCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEe
Q 024451 81 RTSVFGGEFQSGHTADVLSVSISG----SNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTG 156 (267)
Q Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 156 (267)
+. +....+|...|.+++|.| +..+.+++++.||.++|||+.. ...+..+.+|..+|+|+.|--+ .+++++
T Consensus 191 ~~----g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~-~~~~~~lsgHT~~VTCvrwGG~-gliySg 264 (480)
T KOG0271|consen 191 QI----GRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKL-GTCVRTLSGHTASVTCVRWGGE-GLIYSG 264 (480)
T ss_pred cc----cccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccC-ceEEEEeccCccceEEEEEcCC-ceEEec
Confidence 54 244578999999999975 3356899999999999999974 4567788899999999999754 589999
Q ss_pred eCCCcEEEEeCCCCeeeEEEEeec--------------------------------------------------------
Q 024451 157 SDDGTCRLFDIRTGHQLQVYYQQH-------------------------------------------------------- 180 (267)
Q Consensus 157 ~~d~~i~iwd~~~~~~~~~~~~~~-------------------------------------------------------- 180 (267)
+.|++|++|+...+.....+..+.
T Consensus 265 S~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsD 344 (480)
T KOG0271|consen 265 SQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSD 344 (480)
T ss_pred CCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecC
Confidence 999999999987653221111000
Q ss_pred ------------------CCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCC
Q 024451 181 ------------------GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD 242 (267)
Q Consensus 181 ------------------~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 242 (267)
..++..-|..+.||||++++|+++-|..|++||.++++.+..+ .+|-++|..++|+.|
T Consensus 345 d~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasf----RGHv~~VYqvawsaD 420 (480)
T KOG0271|consen 345 DFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASF----RGHVAAVYQVAWSAD 420 (480)
T ss_pred CceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhh----hhccceeEEEEeccC
Confidence 0012234788999999999999999999999999999887665 579999999999999
Q ss_pred CCeEEEeECCCcEEEEecC
Q 024451 243 GSALCTGSWDTNLKIWAFG 261 (267)
Q Consensus 243 ~~~l~sgs~dg~i~~w~~~ 261 (267)
.++|++||.|.++++|++.
T Consensus 421 sRLlVS~SkDsTLKvw~V~ 439 (480)
T KOG0271|consen 421 SRLLVSGSKDSTLKVWDVR 439 (480)
T ss_pred ccEEEEcCCCceEEEEEee
Confidence 9999999999999999864
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.6e-42 Score=269.99 Aligned_cols=234 Identities=29% Similarity=0.515 Sum_probs=203.8
Q ss_pred ceeeCCC--CCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCC
Q 024451 2 TCAFSPT--GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG 79 (267)
Q Consensus 2 ~~~~~~~--g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~ 79 (267)
++.|+|. +..++|++.||++++|++.... +...+.+|...|..++|+|++ .+|+|++.|.+=++||++++
T Consensus 222 ~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~-------~l~~l~gH~~RVs~VafHPsG-~~L~TasfD~tWRlWD~~tk 293 (459)
T KOG0272|consen 222 AAVFHPVDSDLNLATASADGTVKLWKLSQET-------PLQDLEGHLARVSRVAFHPSG-KFLGTASFDSTWRLWDLETK 293 (459)
T ss_pred eEEEccCCCccceeeeccCCceeeeccCCCc-------chhhhhcchhhheeeeecCCC-ceeeecccccchhhcccccc
Confidence 4679997 6789999999999999987532 566789999999999999976 69999999999999999987
Q ss_pred eeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCC
Q 024451 80 LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD 159 (267)
Q Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 159 (267)
..... +.||...|.+++|.+ ++.+++||+.|..-+|||++++. .+..+.+|.++|.+++|+|+|..+||||.|
T Consensus 294 ~ElL~-----QEGHs~~v~~iaf~~-DGSL~~tGGlD~~~RvWDlRtgr-~im~L~gH~k~I~~V~fsPNGy~lATgs~D 366 (459)
T KOG0272|consen 294 SELLL-----QEGHSKGVFSIAFQP-DGSLAATGGLDSLGRVWDLRTGR-CIMFLAGHIKEILSVAFSPNGYHLATGSSD 366 (459)
T ss_pred hhhHh-----hcccccccceeEecC-CCceeeccCccchhheeecccCc-EEEEecccccceeeEeECCCceEEeecCCC
Confidence 54332 358999999999996 56789999999999999999654 678899999999999999999999999999
Q ss_pred CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEcc-CCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEE
Q 024451 160 GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI-SGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLG 238 (267)
Q Consensus 160 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~ 238 (267)
++++|||++..+.+..+.. +..-|+.|+|+| .|.+|++++.|+.++||......++..+ .+|++.|.+++
T Consensus 367 nt~kVWDLR~r~~ly~ipA-----H~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksL----aGHe~kV~s~D 437 (459)
T KOG0272|consen 367 NTCKVWDLRMRSELYTIPA-----HSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSL----AGHEGKVISLD 437 (459)
T ss_pred CcEEEeeecccccceeccc-----ccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhh----cCCccceEEEE
Confidence 9999999998776544332 223589999998 7889999999999999998877766555 57999999999
Q ss_pred ECCCCCeEEEeECCCcEEEEe
Q 024451 239 LSADGSALCTGSWDTNLKIWA 259 (267)
Q Consensus 239 ~~p~~~~l~sgs~dg~i~~w~ 259 (267)
++||+.+++|+|.|+++++|.
T Consensus 438 is~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 438 ISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred eccCCceEEEeccCceeeecc
Confidence 999999999999999999995
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.3e-38 Score=234.23 Aligned_cols=240 Identities=27% Similarity=0.426 Sum_probs=195.5
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
.+..++||++.+++++|+++++||+... ...+.+.||...|.+++|+|++ +.+++|+.|++|++||...+.+
T Consensus 68 dv~~s~dg~~alS~swD~~lrlWDl~~g-------~~t~~f~GH~~dVlsva~s~dn-~qivSGSrDkTiklwnt~g~ck 139 (315)
T KOG0279|consen 68 DVVLSSDGNFALSASWDGTLRLWDLATG-------ESTRRFVGHTKDVLSVAFSTDN-RQIVSGSRDKTIKLWNTLGVCK 139 (315)
T ss_pred ceEEccCCceEEeccccceEEEEEecCC-------cEEEEEEecCCceEEEEecCCC-ceeecCCCcceeeeeeecccEE
Confidence 3678999999999999999999999763 2567789999999999999976 5799999999999999987654
Q ss_pred EEEeCCccccCCccceEEEEEeCCC-CeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCC
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSN-SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG 160 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~ 160 (267)
..+.. .++.+-|.++.|+|.. ..++++++.|++||+||++. .+....+.+|.+.++.++++|||...++|++||
T Consensus 140 ~t~~~----~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~-~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg 214 (315)
T KOG0279|consen 140 YTIHE----DSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN-CQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDG 214 (315)
T ss_pred EEEec----CCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCC-cchhhccccccccEEEEEECCCCCEEecCCCCc
Confidence 43322 1237789999999875 67899999999999999974 445667889999999999999999999999999
Q ss_pred cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccc-----cCCccceEE
Q 024451 161 TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSL-----QNSHEGRIT 235 (267)
Q Consensus 161 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~-----~~~~~~~v~ 235 (267)
.+.+||++.++.+..+ . ....|.+++|+|+..+|+++...+ |+|||+...+.+..+... .+...-...
T Consensus 215 ~~~LwdL~~~k~lysl--~----a~~~v~sl~fspnrywL~~at~~s-IkIwdl~~~~~v~~l~~d~~g~s~~~~~~~cl 287 (315)
T KOG0279|consen 215 EAMLWDLNEGKNLYSL--E----AFDIVNSLCFSPNRYWLCAATATS-IKIWDLESKAVVEELKLDGIGPSSKAGDPICL 287 (315)
T ss_pred eEEEEEccCCceeEec--c----CCCeEeeEEecCCceeEeeccCCc-eEEEeccchhhhhhccccccccccccCCcEEE
Confidence 9999999988775332 1 234699999999998888886554 999999887665433211 011233467
Q ss_pred EEEECCCCCeEEEeECCCcEEEEecC
Q 024451 236 CLGLSADGSALCTGSWDTNLKIWAFG 261 (267)
Q Consensus 236 ~~~~~p~~~~l~sgs~dg~i~~w~~~ 261 (267)
+++|+++|..|.+|-.|+.|++|-+.
T Consensus 288 slaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 288 SLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEEEcCCCcEEEeeecCCcEEEEEee
Confidence 78999999999999999999999754
No 8
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.3e-38 Score=235.05 Aligned_cols=234 Identities=29% Similarity=0.421 Sum_probs=192.9
Q ss_pred CCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCc
Q 024451 9 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE 88 (267)
Q Consensus 9 g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~ 88 (267)
...|++++.|.++-+|++...+...+ .+.+.+.||...|..+..++++ ++.++++.|+++|+||+.+++....|.
T Consensus 28 ~~~l~sasrDk~ii~W~L~~dd~~~G--~~~r~~~GHsH~v~dv~~s~dg-~~alS~swD~~lrlWDl~~g~~t~~f~-- 102 (315)
T KOG0279|consen 28 SDILVSASRDKTIIVWKLTSDDIKYG--VPVRRLTGHSHFVSDVVLSSDG-NFALSASWDGTLRLWDLATGESTRRFV-- 102 (315)
T ss_pred CceEEEcccceEEEEEEeccCccccC--ceeeeeeccceEecceEEccCC-ceEEeccccceEEEEEecCCcEEEEEE--
Confidence 57899999999999999987643333 3567899999999999999975 689999999999999999987777664
Q ss_pred cccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecC--CCEEEEeeCCCcEEEEe
Q 024451 89 FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD--GNRFGTGSDDGTCRLFD 166 (267)
Q Consensus 89 ~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~iwd 166 (267)
+|...+.++++++ +++++++|+.|.+|++|++....+....-..|.+-|.|+.|+|+ ..++++++.|+++++||
T Consensus 103 ---GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWn 178 (315)
T KOG0279|consen 103 ---GHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWN 178 (315)
T ss_pred ---ecCCceEEEEecC-CCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEc
Confidence 7999999999996 45678999999999999987433222222233788999999997 68999999999999999
Q ss_pred CCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeE
Q 024451 167 IRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSAL 246 (267)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l 246 (267)
+++-+....+. ++...++.+++||||..+++|+.||++.+||+...+.+..+ .|...|.+++|+|+.-.|
T Consensus 179 l~~~~l~~~~~-----gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl-----~a~~~v~sl~fspnrywL 248 (315)
T KOG0279|consen 179 LRNCQLRTTFI-----GHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL-----EAFDIVNSLCFSPNRYWL 248 (315)
T ss_pred cCCcchhhccc-----cccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec-----cCCCeEeeEEecCCceeE
Confidence 99866554443 34457999999999999999999999999999988876544 588899999999986555
Q ss_pred EEeECCCcEEEEecCc
Q 024451 247 CTGSWDTNLKIWAFGG 262 (267)
Q Consensus 247 ~sgs~dg~i~~w~~~~ 262 (267)
+ ...+-.|+||++..
T Consensus 249 ~-~at~~sIkIwdl~~ 263 (315)
T KOG0279|consen 249 C-AATATSIKIWDLES 263 (315)
T ss_pred e-eccCCceEEEeccc
Confidence 5 45677899999753
No 9
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.8e-36 Score=239.26 Aligned_cols=233 Identities=25% Similarity=0.439 Sum_probs=198.2
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
+++|+.+|+.||+|+.||.+++|+... .+..++..|+++|+++.|+..+ .+|++++.|+++.+||..++..
T Consensus 240 ~L~Wn~~G~~LatG~~~G~~riw~~~G--------~l~~tl~~HkgPI~slKWnk~G-~yilS~~vD~ttilwd~~~g~~ 310 (524)
T KOG0273|consen 240 SLDWNNDGTLLATGSEDGEARIWNKDG--------NLISTLGQHKGPIFSLKWNKKG-TYILSGGVDGTTILWDAHTGTV 310 (524)
T ss_pred eEEecCCCCeEEEeecCcEEEEEecCc--------hhhhhhhccCCceEEEEEcCCC-CEEEeccCCccEEEEeccCceE
Confidence 689999999999999999999999764 2567888999999999999865 6999999999999999988877
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT 161 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 161 (267)
...+. -|+.....|.|.. ...|++.+.|+.|+++.+. ...+...+.+|.++|.++.|.|.+.+|++++.|++
T Consensus 311 ~q~f~-----~~s~~~lDVdW~~--~~~F~ts~td~~i~V~kv~-~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~T 382 (524)
T KOG0273|consen 311 KQQFE-----FHSAPALDVDWQS--NDEFATSSTDGCIHVCKVG-EDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGT 382 (524)
T ss_pred EEeee-----eccCCccceEEec--CceEeecCCCceEEEEEec-CCCcceeeecccCceEEEEECCCCceEEEecCCCe
Confidence 66653 2555556777863 4568999999999999886 45678889999999999999999999999999999
Q ss_pred EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCC---------CEEEEEEeCCeEEEEeCCccceeeecccccCCccc
Q 024451 162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG---------RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEG 232 (267)
Q Consensus 162 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---------~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 232 (267)
++||..........+. .+...|..+.|+|+| ..+++++.|+.|++||...+.++..+ ..|..
T Consensus 383 lkiWs~~~~~~~~~l~-----~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f----~kH~~ 453 (524)
T KOG0273|consen 383 LKIWSMGQSNSVHDLQ-----AHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTL----MKHQE 453 (524)
T ss_pred eEeeecCCCcchhhhh-----hhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEee----ccCCC
Confidence 9999976654433322 223358889999865 36899999999999999998888765 46999
Q ss_pred eEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451 233 RITCLGLSADGSALCTGSWDTNLKIWAF 260 (267)
Q Consensus 233 ~v~~~~~~p~~~~l~sgs~dg~i~~w~~ 260 (267)
+|.+++|+|+|+|+|+|+.||.|.+|+.
T Consensus 454 pVysvafS~~g~ylAsGs~dg~V~iws~ 481 (524)
T KOG0273|consen 454 PVYSVAFSPNGRYLASGSLDGCVHIWST 481 (524)
T ss_pred ceEEEEecCCCcEEEecCCCCeeEeccc
Confidence 9999999999999999999999999974
No 10
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.8e-35 Score=215.58 Aligned_cols=243 Identities=20% Similarity=0.341 Sum_probs=193.2
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
.+...|+++.|+.|+.- .||+||+..... .+..++.+|+..|++|.|..++ +.+++||+||++||||++....
T Consensus 45 rLeiTpdk~~LAaa~~q-hvRlyD~~S~np-----~Pv~t~e~h~kNVtaVgF~~dg-rWMyTgseDgt~kIWdlR~~~~ 117 (311)
T KOG0315|consen 45 RLEITPDKKDLAAAGNQ-HVRLYDLNSNNP-----NPVATFEGHTKNVTAVGFQCDG-RWMYTGSEDGTVKIWDLRSLSC 117 (311)
T ss_pred eEEEcCCcchhhhccCC-eeEEEEccCCCC-----CceeEEeccCCceEEEEEeecC-eEEEecCCCceEEEEeccCccc
Confidence 36788999999999876 699999976432 1467889999999999998864 7999999999999999987544
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT 161 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 161 (267)
...+ .|..+|+++..+| ++..++++..+|.|++||+.........+......|.++...|+|++++.+-..|.
T Consensus 118 qR~~------~~~spVn~vvlhp-nQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~ 190 (311)
T KOG0315|consen 118 QRNY------QHNSPVNTVVLHP-NQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGN 190 (311)
T ss_pred chhc------cCCCCcceEEecC-CcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCcc
Confidence 3333 4778999999996 45578899999999999998543333333334567899999999999999999999
Q ss_pred EEEEeCCCCeeeEEEEe-ecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCcc-ceeeecccccCCccceEEEEEE
Q 024451 162 CRLFDIRTGHQLQVYYQ-QHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA-KVVLNLGSLQNSHEGRITCLGL 239 (267)
Q Consensus 162 i~iwd~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~v~~~~~ 239 (267)
.-+|++-..+....+.. +....+...+..+.+||++++|+++++|..++||+.... +... ....|++.++..+|
T Consensus 191 cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~----~l~gh~rWvWdc~F 266 (311)
T KOG0315|consen 191 CYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLEL----VLTGHQRWVWDCAF 266 (311)
T ss_pred EEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEE----EeecCCceEEeeee
Confidence 99999876443222211 111234457889999999999999999999999997765 2222 23679999999999
Q ss_pred CCCCCeEEEeECCCcEEEEecCc
Q 024451 240 SADGSALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 240 ~p~~~~l~sgs~dg~i~~w~~~~ 262 (267)
|.||+||++||.|+.+++|++..
T Consensus 267 S~dg~YlvTassd~~~rlW~~~~ 289 (311)
T KOG0315|consen 267 SADGEYLVTASSDHTARLWDLSA 289 (311)
T ss_pred ccCccEEEecCCCCceeeccccc
Confidence 99999999999999999999743
No 11
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.1e-34 Score=216.81 Aligned_cols=242 Identities=23% Similarity=0.413 Sum_probs=199.3
Q ss_pred CceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451 1 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL 80 (267)
Q Consensus 1 ~~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 80 (267)
++..|++|+++|++++.||.+.|||.-..+ + ...++-...-|..|+|+|++ +++++|+.|+...||++.+..
T Consensus 59 ~~~~ws~Dsr~ivSaSqDGklIvWDs~Ttn-K------~haipl~s~WVMtCA~sPSg-~~VAcGGLdN~Csiy~ls~~d 130 (343)
T KOG0286|consen 59 YAMDWSTDSRRIVSASQDGKLIVWDSFTTN-K------VHAIPLPSSWVMTCAYSPSG-NFVACGGLDNKCSIYPLSTRD 130 (343)
T ss_pred eeeEecCCcCeEEeeccCCeEEEEEccccc-c------eeEEecCceeEEEEEECCCC-CeEEecCcCceeEEEeccccc
Confidence 367899999999999999999999975432 1 12233345779999999976 689999999999999998652
Q ss_pred eEEEe-CCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEec-CCCEEEEeeC
Q 024451 81 RTSVF-GGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSD 158 (267)
Q Consensus 81 ~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~ 158 (267)
..... ......+|...+.+..|.. +..++|++.|.++-+||++.+ +....+.+|.+.|.+++++| +++.|++|+-
T Consensus 131 ~~g~~~v~r~l~gHtgylScC~f~d--D~~ilT~SGD~TCalWDie~g-~~~~~f~GH~gDV~slsl~p~~~ntFvSg~c 207 (343)
T KOG0286|consen 131 AEGNVRVSRELAGHTGYLSCCRFLD--DNHILTGSGDMTCALWDIETG-QQTQVFHGHTGDVMSLSLSPSDGNTFVSGGC 207 (343)
T ss_pred ccccceeeeeecCccceeEEEEEcC--CCceEecCCCceEEEEEcccc-eEEEEecCCcccEEEEecCCCCCCeEEeccc
Confidence 11111 1122368999999999975 456899999999999999864 56788999999999999999 8999999999
Q ss_pred CCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEE
Q 024451 159 DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLG 238 (267)
Q Consensus 159 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~ 238 (267)
|+..++||++.+...+.|..+ ...|.+++|.|+|.-+++|+.|+..++||++....+..+.. ..-..+|++++
T Consensus 208 D~~aklWD~R~~~c~qtF~gh-----esDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~--~~~~~gitSv~ 280 (343)
T KOG0286|consen 208 DKSAKLWDVRSGQCVQTFEGH-----ESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSH--DSIICGITSVA 280 (343)
T ss_pred ccceeeeeccCcceeEeeccc-----ccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeecc--CcccCCceeEE
Confidence 999999999999888777543 34699999999999999999999999999988766654432 23456899999
Q ss_pred ECCCCCeEEEeECCCcEEEEec
Q 024451 239 LSADGSALCTGSWDTNLKIWAF 260 (267)
Q Consensus 239 ~~p~~~~l~sgs~dg~i~~w~~ 260 (267)
||..|++|..|..|.++.+||.
T Consensus 281 FS~SGRlLfagy~d~~c~vWDt 302 (343)
T KOG0286|consen 281 FSKSGRLLFAGYDDFTCNVWDT 302 (343)
T ss_pred EcccccEEEeeecCCceeEeec
Confidence 9999999999999999999985
No 12
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=3.9e-35 Score=219.95 Aligned_cols=240 Identities=27% Similarity=0.422 Sum_probs=190.4
Q ss_pred CceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451 1 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL 80 (267)
Q Consensus 1 ~~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 80 (267)
+++.|+|+|.+++|||.|..|.+|++.... +-...+++|++.|..+.|.+++ ..+++++.|++|+.||+++++
T Consensus 51 ~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc------eN~~~lkgHsgAVM~l~~~~d~-s~i~S~gtDk~v~~wD~~tG~ 123 (338)
T KOG0265|consen 51 YTIKFHPDGSCFASGGSDRAIVLWNVYGDC------ENFWVLKGHSGAVMELHGMRDG-SHILSCGTDKTVRGWDAETGK 123 (338)
T ss_pred EEEEECCCCCeEeecCCcceEEEEeccccc------cceeeeccccceeEeeeeccCC-CEEEEecCCceEEEEecccce
Confidence 368899999999999999999999975432 1234567999999999999976 589999999999999999998
Q ss_pred eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCc---------------------------------
Q 024451 81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA--------------------------------- 127 (267)
Q Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~--------------------------------- 127 (267)
+..-+ .+|..-++++.....+..++.+++.|+++++||++..
T Consensus 124 ~~rk~-----k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~i 198 (338)
T KOG0265|consen 124 RIRKH-----KGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDI 198 (338)
T ss_pred eeehh-----ccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCce
Confidence 76544 3566667766655445566777777777777777611
Q ss_pred -------ccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCC---e-eeEEEEeecCCCCCCcEEEEEEccC
Q 024451 128 -------SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG---H-QLQVYYQQHGENEIPHVTSIAFSIS 196 (267)
Q Consensus 128 -------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---~-~~~~~~~~~~~~~~~~v~~~~~s~~ 196 (267)
......+.||.++|+.+..+|+|.++.+-+.|.++++||++.- + ++..+ +.+..+-......++|+|+
T Consensus 199 kvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if-~g~~hnfeknlL~cswsp~ 277 (338)
T KOG0265|consen 199 KVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIF-QGHIHNFEKNLLKCSWSPN 277 (338)
T ss_pred eeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEe-ecchhhhhhhcceeeccCC
Confidence 1123466799999999999999999999999999999998752 2 23333 2222222234567889999
Q ss_pred CCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEE
Q 024451 197 GRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKI 257 (267)
Q Consensus 197 ~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~ 257 (267)
++++.+|+.|..+++||....+.+..+ .+|.+.|.++.|+|...+|.+++.|++|.+
T Consensus 278 ~~~i~ags~dr~vyvwd~~~r~~lykl----pGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 278 GTKITAGSADRFVYVWDTTSRRILYKL----PGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred CCccccccccceEEEeecccccEEEEc----CCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 999999999999999998777776655 579999999999999999999999999875
No 13
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=5.9e-37 Score=238.09 Aligned_cols=236 Identities=23% Similarity=0.432 Sum_probs=199.5
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
.+.|.|+|+.|++|+..|...+|+... .....++++|.++|.++.|++++ .+++||+.+|.|++|+.+....
T Consensus 101 ~v~WtPeGRRLltgs~SGEFtLWNg~~-------fnFEtilQaHDs~Vr~m~ws~~g-~wmiSgD~gG~iKyWqpnmnnV 172 (464)
T KOG0284|consen 101 VVRWTPEGRRLLTGSQSGEFTLWNGTS-------FNFETILQAHDSPVRTMKWSHNG-TWMISGDKGGMIKYWQPNMNNV 172 (464)
T ss_pred eEEEcCCCceeEeecccccEEEecCce-------eeHHHHhhhhcccceeEEEccCC-CEEEEcCCCceEEecccchhhh
Confidence 467999999999999999999999754 23455688999999999999965 6899999999999999865432
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT 161 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 161 (267)
.++ ...|...|.+++|+| ++..|++++.||.|+|||.... +..+.+.+|.-.|.+++|+|....++++|+|..
T Consensus 173 -k~~----~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~-kee~vL~GHgwdVksvdWHP~kgLiasgskDnl 245 (464)
T KOG0284|consen 173 -KII----QAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMP-KEERVLRGHGWDVKSVDWHPTKGLIASGSKDNL 245 (464)
T ss_pred -HHh----hHhhhhhhheeccCC-CCceeEEecCCCeEEEEeccCC-chhheeccCCCCcceeccCCccceeEEccCCce
Confidence 111 234568999999998 5567899999999999999754 456778999999999999999999999999999
Q ss_pred EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECC
Q 024451 162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA 241 (267)
Q Consensus 162 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p 241 (267)
|++||.++++++..+.. +...|..+.|++++++|++++.|..+++||.+.-+.+..+ ..|...|++++|+|
T Consensus 246 VKlWDprSg~cl~tlh~-----HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~----r~Hkkdv~~~~WhP 316 (464)
T KOG0284|consen 246 VKLWDPRSGSCLATLHG-----HKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTY----RGHKKDVTSLTWHP 316 (464)
T ss_pred eEeecCCCcchhhhhhh-----ccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHh----hcchhhheeecccc
Confidence 99999999998765432 2346999999999999999999999999998865554433 57999999999999
Q ss_pred -CCCeEEEeECCCcEEEEecC
Q 024451 242 -DGSALCTGSWDTNLKIWAFG 261 (267)
Q Consensus 242 -~~~~l~sgs~dg~i~~w~~~ 261 (267)
+..+|.+|+.||.|..|.+.
T Consensus 317 ~~~~lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 317 LNESLFTSGGSDGSVVHWVVG 337 (464)
T ss_pred ccccceeeccCCCceEEEecc
Confidence 56788999999999999865
No 14
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.3e-36 Score=236.15 Aligned_cols=234 Identities=31% Similarity=0.523 Sum_probs=196.3
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCC-eeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGH-KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL 80 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 80 (267)
+..|+++|.+++||+.+|.|+.|+..-+ ....+.+| .-.|++++|+|.+ ..++++|.|++|+|||.....
T Consensus 143 ~m~ws~~g~wmiSgD~gG~iKyWqpnmn--------nVk~~~ahh~eaIRdlafSpnD-skF~t~SdDg~ikiWdf~~~k 213 (464)
T KOG0284|consen 143 TMKWSHNGTWMISGDKGGMIKYWQPNMN--------NVKIIQAHHAEAIRDLAFSPND-SKFLTCSDDGTIKIWDFRMPK 213 (464)
T ss_pred eEEEccCCCEEEEcCCCceEEecccchh--------hhHHhhHhhhhhhheeccCCCC-ceeEEecCCCeEEEEeccCCc
Confidence 4579999999999999999999986532 33444454 4899999999954 679999999999999998765
Q ss_pred eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCC
Q 024451 81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG 160 (267)
Q Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~ 160 (267)
...++ .+|.-.+.+++|+| ...++++++.|..|++||.+.+. .+..+.+|...|..+.|.|++++|+++|+|.
T Consensus 214 ee~vL-----~GHgwdVksvdWHP-~kgLiasgskDnlVKlWDprSg~-cl~tlh~HKntVl~~~f~~n~N~Llt~skD~ 286 (464)
T KOG0284|consen 214 EERVL-----RGHGWDVKSVDWHP-TKGLIASGSKDNLVKLWDPRSGS-CLATLHGHKNTVLAVKFNPNGNWLLTGSKDQ 286 (464)
T ss_pred hhhee-----ccCCCCcceeccCC-ccceeEEccCCceeEeecCCCcc-hhhhhhhccceEEEEEEcCCCCeeEEccCCc
Confidence 54444 57999999999997 46689999999999999998654 6778889999999999999999999999999
Q ss_pred cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCC-CEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEE
Q 024451 161 TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG-RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGL 239 (267)
Q Consensus 161 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~ 239 (267)
.++++|+++-+++..+.. +...+.++.|+|-. .+|.+|+.||.|..|.+...+.+ ..++..|...|++++|
T Consensus 287 ~~kv~DiR~mkEl~~~r~-----Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~---~~i~~AHd~~iwsl~~ 358 (464)
T KOG0284|consen 287 SCKVFDIRTMKELFTYRG-----HKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPL---GEIPPAHDGEIWSLAY 358 (464)
T ss_pred eEEEEehhHhHHHHHhhc-----chhhheeeccccccccceeeccCCCceEEEeccccccc---cCCCcccccceeeeec
Confidence 999999997666555432 33468999999965 46778899999999998754443 3345689999999999
Q ss_pred CCCCCeEEEeECCCcEEEEe
Q 024451 240 SADGSALCTGSWDTNLKIWA 259 (267)
Q Consensus 240 ~p~~~~l~sgs~dg~i~~w~ 259 (267)
+|-|.+|++||.|.++++|.
T Consensus 359 hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 359 HPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred cccceeEeecCCCcceeeec
Confidence 99999999999999999996
No 15
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.1e-35 Score=243.30 Aligned_cols=244 Identities=23% Similarity=0.362 Sum_probs=204.8
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
++....+|.+|+|++.|+++++|.+.... ...-+.....+|++.|.+++++..+..+++++|.|+++++|++...+.
T Consensus 370 SL~~~~~g~llat~sKD~svilWr~~~~~---~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~ 446 (775)
T KOG0319|consen 370 SLDVWSSGDLLATGSKDKSVILWRLNNNC---SKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKE 446 (775)
T ss_pred eeeecccCcEEEEecCCceEEEEEecCCc---chhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCccc
Confidence 34434678899999999999999884321 122345567899999999999877778999999999999999975211
Q ss_pred ---EEEeCCc-cccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEee
Q 024451 82 ---TSVFGGE-FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS 157 (267)
Q Consensus 82 ---~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 157 (267)
...+..+ ....|...|+++++.| ++.+++||+.|++.+||+++ .......+.+|...+.++.|+|..+.++++|
T Consensus 447 ~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le-~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~S 524 (775)
T KOG0319|consen 447 TAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLE-QLRLLGVLSGHTRGVWCVSFSKNDQLLATCS 524 (775)
T ss_pred ccccceehhhHHHHhhcccccceEecC-CCceEEecccccceeeeccc-CceEEEEeeCCccceEEEEeccccceeEecc
Confidence 1111111 2346999999999996 57899999999999999998 4557788999999999999999999999999
Q ss_pred CCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEE
Q 024451 158 DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCL 237 (267)
Q Consensus 158 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~ 237 (267)
.|++|+||.+.+..++..+- ++...|..+.|-.++..|+++++||-+++|+..+.+.+.++ ..|++.|+++
T Consensus 525 gD~TvKIW~is~fSClkT~e-----GH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tl----D~H~DrvWaL 595 (775)
T KOG0319|consen 525 GDKTVKIWSISTFSCLKTFE-----GHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTL----DAHNDRVWAL 595 (775)
T ss_pred CCceEEEEEeccceeeeeec-----CccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhh----hhccceeEEE
Confidence 99999999999999887763 33456899999999999999999999999999999888766 5799999999
Q ss_pred EECCCCCeEEEeECCCcEEEEe
Q 024451 238 GLSADGSALCTGSWDTNLKIWA 259 (267)
Q Consensus 238 ~~~p~~~~l~sgs~dg~i~~w~ 259 (267)
+.+|...++++|+.||.|.+|.
T Consensus 596 ~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 596 SVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred eecCccceeEecCCCeEEEEee
Confidence 9999999999999999999994
No 16
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.2e-34 Score=244.48 Aligned_cols=241 Identities=28% Similarity=0.554 Sum_probs=201.4
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
+++|+|+|+++++++.|+++++||+..+ ....+++++|...|+++.|+|.+ +++++|+.|++|+|||+.++..
T Consensus 208 ~~~fs~d~~~l~s~s~D~tiriwd~~~~------~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~ 280 (456)
T KOG0266|consen 208 DVAFSPDGSYLLSGSDDKTLRIWDLKDD------GRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGEC 280 (456)
T ss_pred eeEECCCCcEEEEecCCceEEEeeccCC------CeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeE
Confidence 5899999999999999999999999432 23678899999999999999988 7899999999999999999887
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCccc-ceEEeeccccc--eeEEEEecCCCEEEEeeC
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR-AVRTFHGHEGD--VNTVKFFPDGNRFGTGSD 158 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~~--i~~~~~~~~~~~l~~~~~ 158 (267)
...+ .+|...|..+++++ +++++++++.|+.|++||+..... ....+.++... ++++.|+|+++++++++.
T Consensus 281 ~~~l-----~~hs~~is~~~f~~-d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~ 354 (456)
T KOG0266|consen 281 VRKL-----KGHSDGISGLAFSP-DGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL 354 (456)
T ss_pred EEee-----eccCCceEEEEECC-CCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC
Confidence 7766 47999999999986 567888999999999999975442 24455555544 899999999999999999
Q ss_pred CCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCc-cceEEEE
Q 024451 159 DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSH-EGRITCL 237 (267)
Q Consensus 159 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~v~~~ 237 (267)
|+.+++||++.++....+..+... ..++.+..+++.+.++++|+.|+.|++||..+...+..+ ..| ...+..+
T Consensus 355 d~~~~~w~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l----~~h~~~~~~~~ 428 (456)
T KOG0266|consen 355 DRTLKLWDLRSGKSVGTYTGHSNL--VRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRL----EGHSKAAVSDL 428 (456)
T ss_pred CCeEEEEEccCCcceeeecccCCc--ceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhh----cCCCCCceecc
Confidence 999999999988777665443221 134556667889999999999999999999876554433 457 7889999
Q ss_pred EECCCCCeEEEeE--CCCcEEEEecC
Q 024451 238 GLSADGSALCTGS--WDTNLKIWAFG 261 (267)
Q Consensus 238 ~~~p~~~~l~sgs--~dg~i~~w~~~ 261 (267)
+++|..+++++++ .|+.+++|...
T Consensus 429 ~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 429 SSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred ccCCCcCeeeecCcCCCceEEEecCC
Confidence 9999999999998 69999999864
No 17
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=4.9e-34 Score=240.72 Aligned_cols=241 Identities=33% Similarity=0.550 Sum_probs=200.9
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCC-Ce
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT-GL 80 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~-~~ 80 (267)
++.|+|+|+.+++++.|+++++|+...... ...+.+.+|...|+.++|+|++ .++++++.|++|+|||+.. +.
T Consensus 164 ~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-----~~~~~l~~h~~~v~~~~fs~d~-~~l~s~s~D~tiriwd~~~~~~ 237 (456)
T KOG0266|consen 164 CVDFSPDGRALAAASSDGLIRIWKLEGIKS-----NLLRELSGHTRGVSDVAFSPDG-SYLLSGSDDKTLRIWDLKDDGR 237 (456)
T ss_pred EEEEcCCCCeEEEccCCCcEEEeecccccc-----hhhccccccccceeeeEECCCC-cEEEEecCCceEEEeeccCCCe
Confidence 468999999999999999999999843210 2455668999999999999976 4899999999999999943 35
Q ss_pred eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCC
Q 024451 81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG 160 (267)
Q Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~ 160 (267)
...++ .+|...+++++|++.. +++++|+.|++|+|||++. .+..+.+.+|.+.|.+++|+++++++++++.|+
T Consensus 238 ~~~~l-----~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~-~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~ 310 (456)
T KOG0266|consen 238 NLKTL-----KGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRT-GECVRKLKGHSDGISGLAFSPDGNLLVSASYDG 310 (456)
T ss_pred EEEEe-----cCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccC-CeEEEeeeccCCceEEEEECCCCCEEEEcCCCc
Confidence 55555 4899999999999876 8999999999999999986 567889999999999999999999999999999
Q ss_pred cEEEEeCCCCee--eEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccc---eEE
Q 024451 161 TCRLFDIRTGHQ--LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEG---RIT 235 (267)
Q Consensus 161 ~i~iwd~~~~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~---~v~ 235 (267)
.|++||+.++.. ...+.. ..... .++.++|+|++.++++++.|+.+++||+...+...... .|.. ++.
T Consensus 311 ~i~vwd~~~~~~~~~~~~~~--~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~----~~~~~~~~~~ 383 (456)
T KOG0266|consen 311 TIRVWDLETGSKLCLKLLSG--AENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYT----GHSNLVRCIF 383 (456)
T ss_pred cEEEEECCCCceeeeecccC--CCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeec----ccCCcceeEe
Confidence 999999998873 233222 12222 68999999999999999999999999998777665543 3332 555
Q ss_pred EEEECCCCCeEEEeECCCcEEEEecCc
Q 024451 236 CLGLSADGSALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 236 ~~~~~p~~~~l~sgs~dg~i~~w~~~~ 262 (267)
....++.++++++|+.|+.|.+|++..
T Consensus 384 ~~~~~~~~~~i~sg~~d~~v~~~~~~s 410 (456)
T KOG0266|consen 384 SPTLSTGGKLIYSGSEDGSVYVWDSSS 410 (456)
T ss_pred cccccCCCCeEEEEeCCceEEEEeCCc
Confidence 666688999999999999999999764
No 18
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.4e-35 Score=216.45 Aligned_cols=240 Identities=23% Similarity=0.337 Sum_probs=200.0
Q ss_pred ceeeCCCC-CeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451 2 TCAFSPTG-QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL 80 (267)
Q Consensus 2 ~~~~~~~g-~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 80 (267)
.++|++.- +.+++++-||++++||...+. .+...++.|+.+|+++.|++.....++++|.|++||+|+...+.
T Consensus 65 dV~Wse~~e~~~~~a~GDGSLrl~d~~~~s------~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~ 138 (311)
T KOG0277|consen 65 DVAWSENHENQVIAASGDGSLRLFDLTMPS------KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN 138 (311)
T ss_pred EeeecCCCcceEEEEecCceEEEeccCCCC------cchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence 56788644 778899999999999976654 25678899999999999999877888899999999999999888
Q ss_pred eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEec-CCCEEEEeeCC
Q 024451 81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDD 159 (267)
Q Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d 159 (267)
.+.++ .+|...|....|+|....++++++.|+.+++||++...+.+. +..|...|.++.|+. +.+.+++|+.|
T Consensus 139 Sv~Tf-----~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd 212 (311)
T KOG0277|consen 139 SVQTF-----NGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVD 212 (311)
T ss_pred ceEee-----cCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEEecCCC
Confidence 88776 479999999999999999999999999999999997766554 788999999999988 56789999999
Q ss_pred CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCC-CEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEE
Q 024451 160 GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG-RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLG 238 (267)
Q Consensus 160 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~ 238 (267)
+.|+.||+++-+...... .++...|..++|||.. ..|++++.|-.++|||...+...... ...|.+-+..+.
T Consensus 213 ~~vr~wDir~~r~pl~eL----~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~---~~~HtEFv~g~D 285 (311)
T KOG0277|consen 213 NLVRGWDIRNLRTPLFEL----NGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIET---VDHHTEFVCGLD 285 (311)
T ss_pred ceEEEEehhhccccceee----cCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhh---hhccceEEeccc
Confidence 999999998765432111 2344579999999975 47788999999999998765543322 146888999999
Q ss_pred ECC-CCCeEEEeECCCcEEEEec
Q 024451 239 LSA-DGSALCTGSWDTNLKIWAF 260 (267)
Q Consensus 239 ~~p-~~~~l~sgs~dg~i~~w~~ 260 (267)
||+ ++.++|+++.|..+.||..
T Consensus 286 ws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 286 WSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred cccccCceeeecccccceeeecc
Confidence 997 5679999999999999974
No 19
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=7.4e-36 Score=236.39 Aligned_cols=239 Identities=26% Similarity=0.437 Sum_probs=197.7
Q ss_pred eeeCC-CCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 3 CAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 3 ~~~~~-~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
+.|.| .+.+|+++|.|+.|+||++-.. ..+.+++.+|+.+|..++|++++. .++|+|.|+.|++||.++|..
T Consensus 220 i~~fp~~~hLlLS~gmD~~vklW~vy~~------~~~lrtf~gH~k~Vrd~~~s~~g~-~fLS~sfD~~lKlwDtETG~~ 292 (503)
T KOG0282|consen 220 IQWFPKKGHLLLSGGMDGLVKLWNVYDD------RRCLRTFKGHRKPVRDASFNNCGT-SFLSASFDRFLKLWDTETGQV 292 (503)
T ss_pred hhhccceeeEEEecCCCceEEEEEEecC------cceehhhhcchhhhhhhhccccCC-eeeeeecceeeeeeccccceE
Confidence 45777 8899999999999999998642 248899999999999999999764 688999999999999999987
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT 161 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 161 (267)
...+. -...+.++.++|.+.++|++|+.|+.|+-||++. .+.+..+..|-+.|..+.|-++++.|++.++|++
T Consensus 293 ~~~f~------~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs-~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks 365 (503)
T KOG0282|consen 293 LSRFH------LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRS-GKVVQEYDRHLGAILDITFVDEGRRFISSSDDKS 365 (503)
T ss_pred EEEEe------cCCCceeeecCCCCCcEEEEecCCCcEEEEeccc-hHHHHHHHhhhhheeeeEEccCCceEeeeccCcc
Confidence 77653 2345678999998889999999999999999985 4567778889999999999999999999999999
Q ss_pred EEEEeCCCCeeeEEEEeecC-------------------------------------------CCCCCcEEEEEEccCCC
Q 024451 162 CRLFDIRTGHQLQVYYQQHG-------------------------------------------ENEIPHVTSIAFSISGR 198 (267)
Q Consensus 162 i~iwd~~~~~~~~~~~~~~~-------------------------------------------~~~~~~v~~~~~s~~~~ 198 (267)
++||+.+.+-.+........ ..-.+.-..+.|||+|+
T Consensus 366 ~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~ 445 (503)
T KOG0282|consen 366 VRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGR 445 (503)
T ss_pred EEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCC
Confidence 99999876422211100000 00013345788999999
Q ss_pred EEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCC-CCeEEEeECCCcEEEEe
Q 024451 199 LLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD-GSALCTGSWDTNLKIWA 259 (267)
Q Consensus 199 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~l~sgs~dg~i~~w~ 259 (267)
+|++|.+||.+++||..+-+.+..+ +.|.+++..+.|+|. ..-+|+|+.||.|++|+
T Consensus 446 ~l~SGdsdG~v~~wdwkt~kl~~~l----kah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 446 TLCSGDSDGKVNFWDWKTTKLVSKL----KAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred eEEeecCCccEEEeechhhhhhhcc----ccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 9999999999999999887776554 679999999999996 45789999999999995
No 20
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.5e-34 Score=240.46 Aligned_cols=251 Identities=21% Similarity=0.322 Sum_probs=197.7
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCC----------------------------CC---------------CCC----
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSP----------------------------TD---------------KDG---- 34 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~----------------------------~~---------------~~~---- 34 (267)
++.|++||++||+||+|+.|+||.+... .. ...
T Consensus 272 ~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p 351 (712)
T KOG0283|consen 272 AMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLP 351 (712)
T ss_pred EEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCccccCC
Confidence 6789999999999999999999998650 00 000
Q ss_pred ------CCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCe
Q 024451 35 ------NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSR 108 (267)
Q Consensus 35 ------~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 108 (267)
.-++.+.++||.+.|-.+.|+.+ ++|+++|.|++||+|++....++.+| .|.+.|+||+|+|.+++
T Consensus 352 ~~~f~f~ekP~~ef~GHt~DILDlSWSKn--~fLLSSSMDKTVRLWh~~~~~CL~~F------~HndfVTcVaFnPvDDr 423 (712)
T KOG0283|consen 352 LKAFVFSEKPFCEFKGHTADILDLSWSKN--NFLLSSSMDKTVRLWHPGRKECLKVF------SHNDFVTCVAFNPVDDR 423 (712)
T ss_pred CccccccccchhhhhccchhheecccccC--CeeEeccccccEEeecCCCcceeeEE------ecCCeeEEEEecccCCC
Confidence 01245678999999999999875 58999999999999999999888887 49999999999999999
Q ss_pred EEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeec--CCC-CC
Q 024451 109 MFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH--GEN-EI 185 (267)
Q Consensus 109 ~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~~-~~ 185 (267)
+|++|+-|+.||||++.. .+....... ..-|++++|.|+|++.+.|+-+|.+++|+++..+......-.. ..+ ..
T Consensus 424 yFiSGSLD~KvRiWsI~d-~~Vv~W~Dl-~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~ 501 (712)
T KOG0283|consen 424 YFISGSLDGKVRLWSISD-KKVVDWNDL-RDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQG 501 (712)
T ss_pred cEeecccccceEEeecCc-CeeEeehhh-hhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccC
Confidence 999999999999999863 334433333 3779999999999999999999999999998765432211111 111 11
Q ss_pred CcEEEEEEccCCC-EEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCceE
Q 024451 186 PHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGYR 264 (267)
Q Consensus 186 ~~v~~~~~s~~~~-~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~~ 264 (267)
..|+.+.|.|... -+++.++|..|+|||.+...++..+......+. -....|+.||++|+++|.|..|.+|++..+.
T Consensus 502 ~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~S--Q~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 502 KRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSS--QISASFSSDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred ceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCc--ceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence 2599999886544 577788999999999977777766654433332 3568899999999999999999999986554
No 21
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=7e-35 Score=242.93 Aligned_cols=197 Identities=30% Similarity=0.523 Sum_probs=173.2
Q ss_pred CceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451 1 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL 80 (267)
Q Consensus 1 ~~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 80 (267)
+.|.|+|+.++|++++.|+++|+|.+.... ..-.++||..+|++++|+|.+ -++||||.|++-++|......
T Consensus 455 yg~sFsPd~rfLlScSED~svRLWsl~t~s-------~~V~y~GH~~PVwdV~F~P~G-yYFatas~D~tArLWs~d~~~ 526 (707)
T KOG0263|consen 455 YGCSFSPDRRFLLSCSEDSSVRLWSLDTWS-------CLVIYKGHLAPVWDVQFAPRG-YYFATASHDQTARLWSTDHNK 526 (707)
T ss_pred eeeeecccccceeeccCCcceeeeecccce-------eEEEecCCCcceeeEEecCCc-eEEEecCCCceeeeeecccCC
Confidence 458899999999999999999999987632 455678999999999999975 589999999999999988766
Q ss_pred eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCC
Q 024451 81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG 160 (267)
Q Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~ 160 (267)
+..++ .+|-.++.|+.|+| +..++++|+.|.+||+||+..+ ..++.+.||.++|.+++|+|+|.+|++|+.|+
T Consensus 527 PlRif-----aghlsDV~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~G-~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~ 599 (707)
T KOG0263|consen 527 PLRIF-----AGHLSDVDCVSFHP-NSNYVATGSSDRTVRLWDVSTG-NSVRIFTGHKGPVTALAFSPCGRYLASGDEDG 599 (707)
T ss_pred chhhh-----cccccccceEEECC-cccccccCCCCceEEEEEcCCC-cEEEEecCCCCceEEEEEcCCCceEeecccCC
Confidence 65555 47999999999997 5678999999999999999754 46899999999999999999999999999999
Q ss_pred cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCcc
Q 024451 161 TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA 217 (267)
Q Consensus 161 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~ 217 (267)
.|++||+.+++.+..+..+ ...|.++.|+.+|..|++|+.|..|++||+...
T Consensus 600 ~I~iWDl~~~~~v~~l~~H-----t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 600 LIKIWDLANGSLVKQLKGH-----TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred cEEEEEcCCCcchhhhhcc-----cCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 9999999998876655443 346999999999999999999999999997643
No 22
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.6e-34 Score=219.72 Aligned_cols=238 Identities=24% Similarity=0.363 Sum_probs=202.7
Q ss_pred eeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe-e
Q 024451 3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL-R 81 (267)
Q Consensus 3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-~ 81 (267)
..|+|+-...++++.|+++++||....+ +.+.++||++.|..++|...+ .++++++.|=.+++||.++.. +
T Consensus 114 v~~hp~~~~v~~as~d~tikv~D~~tg~-------~e~~LrGHt~sv~di~~~a~G-k~l~tcSsDl~~~LWd~~~~~~c 185 (406)
T KOG0295|consen 114 VIFHPSEALVVSASEDATIKVFDTETGE-------LERSLRGHTDSVFDISFDASG-KYLATCSSDLSAKLWDFDTFFRC 185 (406)
T ss_pred eeeccCceEEEEecCCceEEEEEccchh-------hhhhhhccccceeEEEEecCc-cEEEecCCccchhheeHHHHHHH
Confidence 3578999999999999999999987633 578999999999999999876 689999999999999997632 1
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT 161 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 161 (267)
+. ...+|+..|.++.+.|.+ ..+++++.|.+|+.|++.+ ...+..+.+|...+..++.+.||..+++++.|.+
T Consensus 186 ~k-----s~~gh~h~vS~V~f~P~g-d~ilS~srD~tik~We~~t-g~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqt 258 (406)
T KOG0295|consen 186 IK-----SLIGHEHGVSSVFFLPLG-DHILSCSRDNTIKAWECDT-GYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQT 258 (406)
T ss_pred HH-----HhcCcccceeeEEEEecC-CeeeecccccceeEEeccc-ceeEEeccCchHhEEEEEecCCeeEEEecCCCce
Confidence 11 224788899999999765 6789999999999999975 5678899999999999999999999999999999
Q ss_pred EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccC---------------CCEEEEEEeCCeEEEEeCCccceeeecccc
Q 024451 162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS---------------GRLLFAGYSNGDCYVWDTLLAKVVLNLGSL 226 (267)
Q Consensus 162 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---------------~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~ 226 (267)
+++|-+.+.++...+..++ -++.+++|.|. ++++.+++.|+.|++||+.++..+..+
T Consensus 259 l~vW~~~t~~~k~~lR~hE-----h~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL--- 330 (406)
T KOG0295|consen 259 LRVWVVATKQCKAELREHE-----HPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTL--- 330 (406)
T ss_pred EEEEEeccchhhhhhhccc-----cceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEE---
Confidence 9999998876554443322 24677777552 358999999999999999999988776
Q ss_pred cCCccceEEEEEECCCCCeEEEeECCCcEEEEecCceE
Q 024451 227 QNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGYR 264 (267)
Q Consensus 227 ~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~~ 264 (267)
.+|...|..++|+|.|+||+|+..|+++++|++...+
T Consensus 331 -~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~ 367 (406)
T KOG0295|consen 331 -VGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQ 367 (406)
T ss_pred -ecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccce
Confidence 5799999999999999999999999999999987665
No 23
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.1e-34 Score=222.85 Aligned_cols=247 Identities=21% Similarity=0.372 Sum_probs=190.6
Q ss_pred eeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeE
Q 024451 3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT 82 (267)
Q Consensus 3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 82 (267)
|.|+++|++|||++.|.+.-+|.+.... ..++..++.+|..+|..+.|+|++ ++|++|+.|..+++||+.++...
T Consensus 230 l~FS~nGkyLAsaSkD~Taiiw~v~~d~----~~kl~~tlvgh~~~V~yi~wSPDd-ryLlaCg~~e~~~lwDv~tgd~~ 304 (519)
T KOG0293|consen 230 LQFSHNGKYLASASKDSTAIIWIVVYDV----HFKLKKTLVGHSQPVSYIMWSPDD-RYLLACGFDEVLSLWDVDTGDLR 304 (519)
T ss_pred EEEcCCCeeEeeccCCceEEEEEEecCc----ceeeeeeeecccCceEEEEECCCC-CeEEecCchHheeeccCCcchhh
Confidence 6799999999999999999999987532 366788899999999999999975 79999999999999999999877
Q ss_pred EEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeec-cccceeEEEEecCCCEEEEeeCCCc
Q 024451 83 SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG-HEGDVNTVKFFPDGNRFGTGSDDGT 161 (267)
Q Consensus 83 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~ 161 (267)
..++ .++...+.+++|.|. +..+++|+.|+.+..||... . ....-++ ....|.+++..+||+++++.+.|..
T Consensus 305 ~~y~----~~~~~S~~sc~W~pD-g~~~V~Gs~dr~i~~wdlDg-n-~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~ 377 (519)
T KOG0293|consen 305 HLYP----SGLGFSVSSCAWCPD-GFRFVTGSPDRTIIMWDLDG-N-ILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKK 377 (519)
T ss_pred hhcc----cCcCCCcceeEEccC-CceeEecCCCCcEEEecCCc-c-hhhcccccccceeEEEEEcCCCcEEEEEecccc
Confidence 7664 345678889999975 55689999999999999863 2 2222222 2356899999999999999999999
Q ss_pred EEEEeCCCCeeeEEEEeecC--------C------------------------------CCCCcEEEEEEcc-CCCEEEE
Q 024451 162 CRLFDIRTGHQLQVYYQQHG--------E------------------------------NEIPHVTSIAFSI-SGRLLFA 202 (267)
Q Consensus 162 i~iwd~~~~~~~~~~~~~~~--------~------------------------------~~~~~v~~~~~s~-~~~~l~~ 202 (267)
|++++..+..+......++. . .....+-.-||.- +..++++
T Consensus 378 i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaS 457 (519)
T KOG0293|consen 378 IRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIAS 457 (519)
T ss_pred eeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEe
Confidence 99998765322111100000 0 0011233445543 4478999
Q ss_pred EEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCC-CCeEEEeECCCcEEEEecCceEe
Q 024451 203 GYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD-GSALCTGSWDTNLKIWAFGGYRR 265 (267)
Q Consensus 203 g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~l~sgs~dg~i~~w~~~~~~~ 265 (267)
|++|+.|+||+..+++.+..+ .+|...|+|++|+|. ..++|+||.||+||||.....+|
T Consensus 458 GSED~kvyIWhr~sgkll~~L----sGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~~r 517 (519)
T KOG0293|consen 458 GSEDSKVYIWHRISGKLLAVL----SGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDNNR 517 (519)
T ss_pred cCCCceEEEEEccCCceeEee----cCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcccc
Confidence 999999999999888887665 579999999999995 56799999999999998765433
No 24
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.1e-33 Score=222.74 Aligned_cols=234 Identities=27% Similarity=0.428 Sum_probs=199.9
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
+..|..||++|+.|+.+|.|++||..+ ....+.+.+|..+|+.+.|.|++...+++|+.|+.+++||+.+...
T Consensus 73 s~~fR~DG~LlaaGD~sG~V~vfD~k~-------r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v 145 (487)
T KOG0310|consen 73 SVDFRSDGRLLAAGDESGHVKVFDMKS-------RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV 145 (487)
T ss_pred EEEeecCCeEEEccCCcCcEEEecccc-------HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE
Confidence 567899999999999999999999543 2367889999999999999999999999999999999999998763
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT 161 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 161 (267)
... ..+|++.|.+.+++|.++++++||+.||+||+||++.....+..+ .|..+|..+.+-|.|..+++++. ..
T Consensus 146 ~~~-----l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAgG-n~ 218 (487)
T KOG0310|consen 146 QAE-----LSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAGG-NS 218 (487)
T ss_pred EEE-----ecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcCC-Ce
Confidence 222 368999999999999999999999999999999998765555556 48899999999999999999885 49
Q ss_pred EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECC
Q 024451 162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA 241 (267)
Q Consensus 162 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p 241 (267)
+++||+.++.++..... ++...|+|+++..++..|++|+-||.+++||....+.+..+ ...++|.+++.+|
T Consensus 219 vkVWDl~~G~qll~~~~----~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~-----~~~~pvLsiavs~ 289 (487)
T KOG0310|consen 219 VKVWDLTTGGQLLTSMF----NHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSW-----KYPGPVLSIAVSP 289 (487)
T ss_pred EEEEEecCCceehhhhh----cccceEEEEEeecCCceEeecccccceEEEEccceEEEEee-----ecccceeeEEecC
Confidence 99999987665543322 23346999999999999999999999999998777877665 3568999999999
Q ss_pred CCCeEEEeECCCcEEEE
Q 024451 242 DGSALCTGSWDTNLKIW 258 (267)
Q Consensus 242 ~~~~l~sgs~dg~i~~w 258 (267)
+++.++.|-.||.+.+=
T Consensus 290 dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 290 DDQTVVIGMSNGLVSIR 306 (487)
T ss_pred CCceEEEecccceeeee
Confidence 99999999999987664
No 25
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=5e-33 Score=205.96 Aligned_cols=239 Identities=22% Similarity=0.379 Sum_probs=189.9
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
.++|+|.|++|++|+.|.++.||.=. .+.+.+..++.||.++|.|++|++++ .+||+++.|++|-||.+..+..
T Consensus 66 svAwsp~g~~La~aSFD~t~~Iw~k~-----~~efecv~~lEGHEnEVK~Vaws~sG-~~LATCSRDKSVWiWe~deddE 139 (312)
T KOG0645|consen 66 SVAWSPHGRYLASASFDATVVIWKKE-----DGEFECVATLEGHENEVKCVAWSASG-NYLATCSRDKSVWIWEIDEDDE 139 (312)
T ss_pred eeeecCCCcEEEEeeccceEEEeecC-----CCceeEEeeeeccccceeEEEEcCCC-CEEEEeeCCCeEEEEEecCCCc
Confidence 47999999999999999999999643 34466788999999999999999975 6999999999999999985433
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcc--cceEEeeccccceeEEEEecCCCEEEEeeCC
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS--RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD 159 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 159 (267)
.... ...+.|...|.-+.|+|. ..+|++++.|.+||+|.-.... .....+.+|...|.+++|+|.|..|+++++|
T Consensus 140 fec~--aVL~~HtqDVK~V~WHPt-~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD 216 (312)
T KOG0645|consen 140 FECI--AVLQEHTQDVKHVIWHPT-EDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDD 216 (312)
T ss_pred EEEE--eeeccccccccEEEEcCC-cceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCC
Confidence 2222 234689999999999975 4588999999999999754211 2467888999999999999999999999999
Q ss_pred CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCcc--ceeee-cccccCCccceEEE
Q 024451 160 GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA--KVVLN-LGSLQNSHEGRITC 236 (267)
Q Consensus 160 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~--~~~~~-~~~~~~~~~~~v~~ 236 (267)
++++||-..+.- . ..+...+..+.|. ...|++++.|+.|++|.-... .+..+ +......|+..|++
T Consensus 217 ~tv~Iw~~~~~~--~-------~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNs 285 (312)
T KOG0645|consen 217 GTVSIWRLYTDL--S-------GMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNS 285 (312)
T ss_pred cceEeeeeccCc--c-------hhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccce
Confidence 999999854311 0 1122357788887 668999999999999964321 11111 12234578999999
Q ss_pred EEECCC-CCeEEEeECCCcEEEEec
Q 024451 237 LGLSAD-GSALCTGSWDTNLKIWAF 260 (267)
Q Consensus 237 ~~~~p~-~~~l~sgs~dg~i~~w~~ 260 (267)
+.|+|. .+.|++|+.||.|++|.+
T Consensus 286 V~w~p~~~~~L~s~~DDG~v~~W~l 310 (312)
T KOG0645|consen 286 VQWNPKVSNRLASGGDDGIVNFWEL 310 (312)
T ss_pred EEEcCCCCCceeecCCCceEEEEEe
Confidence 999994 789999999999999975
No 26
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6e-33 Score=230.47 Aligned_cols=240 Identities=25% Similarity=0.371 Sum_probs=191.2
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
+++++|||++++||+.||.|+|||.... -+..++..|++.|+.+.|...+ +.++++|.||+||.||+.....
T Consensus 355 ~l~YSpDgq~iaTG~eDgKVKvWn~~Sg-------fC~vTFteHts~Vt~v~f~~~g-~~llssSLDGtVRAwDlkRYrN 426 (893)
T KOG0291|consen 355 SLAYSPDGQLIATGAEDGKVKVWNTQSG-------FCFVTFTEHTSGVTAVQFTARG-NVLLSSSLDGTVRAWDLKRYRN 426 (893)
T ss_pred eEEECCCCcEEEeccCCCcEEEEeccCc-------eEEEEeccCCCceEEEEEEecC-CEEEEeecCCeEEeeeecccce
Confidence 5789999999999999999999997642 2677899999999999999865 5799999999999999987665
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCC-eEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCC
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS-TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG 160 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~ 160 (267)
..++. .+......++++.|+ +.++++|+.|. .|.+|++++ .+.+..+.||+++|.++.|+|.++.|++++.|+
T Consensus 427 fRTft----~P~p~QfscvavD~s-GelV~AG~~d~F~IfvWS~qT-GqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDk 500 (893)
T KOG0291|consen 427 FRTFT----SPEPIQFSCVAVDPS-GELVCAGAQDSFEIFVWSVQT-GQLLDILSGHEGPVSGLSFSPDGSLLASGSWDK 500 (893)
T ss_pred eeeec----CCCceeeeEEEEcCC-CCEEEeeccceEEEEEEEeec-CeeeehhcCCCCcceeeEEccccCeEEeccccc
Confidence 55553 223344567888765 55777788777 499999975 567888999999999999999999999999999
Q ss_pred cEEEEeCCCCe-eeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccc-------------
Q 024451 161 TCRLFDIRTGH-QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSL------------- 226 (267)
Q Consensus 161 ~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~------------- 226 (267)
+||+||+-... ..+.+.. ...+..++|+|+|.-+++++.||+|.+||.+.......+...
T Consensus 501 TVRiW~if~s~~~vEtl~i------~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ 574 (893)
T KOG0291|consen 501 TVRIWDIFSSSGTVETLEI------RSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRI 574 (893)
T ss_pred eEEEEEeeccCceeeeEee------ccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhcccccccccee
Confidence 99999985432 2222211 124789999999999999999999999997655433221110
Q ss_pred c---CCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451 227 Q---NSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG 261 (267)
Q Consensus 227 ~---~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~ 261 (267)
. .......+++++++||+++++|+..+.|.||++.
T Consensus 575 ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~ 612 (893)
T KOG0291|consen 575 TAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVP 612 (893)
T ss_pred ehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECc
Confidence 0 0123578999999999999999999999999863
No 27
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=4e-35 Score=224.28 Aligned_cols=221 Identities=25% Similarity=0.479 Sum_probs=184.5
Q ss_pred CCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCC
Q 024451 8 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGG 87 (267)
Q Consensus 8 ~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 87 (267)
|...+++|..|++|++||... ..+.+++.||++.|.|++|. .+.+++||.|.+|++||+++++.+.++
T Consensus 206 DD~kiVSGlrDnTikiWD~n~-------~~c~~~L~GHtGSVLCLqyd---~rviisGSSDsTvrvWDv~tge~l~tl-- 273 (499)
T KOG0281|consen 206 DDEKIVSGLRDNTIKIWDKNS-------LECLKILTGHTGSVLCLQYD---ERVIVSGSSDSTVRVWDVNTGEPLNTL-- 273 (499)
T ss_pred cchhhhcccccCceEEecccc-------HHHHHhhhcCCCcEEeeecc---ceEEEecCCCceEEEEeccCCchhhHH--
Confidence 456799999999999999765 34778899999999999984 358999999999999999999877665
Q ss_pred ccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcc--cceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEE
Q 024451 88 EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS--RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLF 165 (267)
Q Consensus 88 ~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw 165 (267)
-+|.+.+..+.|+. .++++++.|.++.+||+..+. ...+.+.||...|+.+.|+ .+++++++.|++|++|
T Consensus 274 ---ihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW 345 (499)
T KOG0281|consen 274 ---IHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVW 345 (499)
T ss_pred ---hhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEE
Confidence 36899999999963 478999999999999986543 2345677999999999995 4699999999999999
Q ss_pred eCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCe
Q 024451 166 DIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSA 245 (267)
Q Consensus 166 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 245 (267)
++.+.+.+..+.. +...|.++.+ .++++++|++|..|++||...++.+.-+ .+|++-|.|+.|. .+-
T Consensus 346 ~~st~efvRtl~g-----HkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvL----eGHEeLvRciRFd--~kr 412 (499)
T KOG0281|consen 346 STSTCEFVRTLNG-----HKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVL----EGHEELVRCIRFD--NKR 412 (499)
T ss_pred eccceeeehhhhc-----ccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHH----hchHHhhhheeec--Cce
Confidence 9998876654432 2334666654 6789999999999999999988876543 6899999999996 578
Q ss_pred EEEeECCCcEEEEecC
Q 024451 246 LCTGSWDTNLKIWAFG 261 (267)
Q Consensus 246 l~sgs~dg~i~~w~~~ 261 (267)
+++|+.||.|++|++.
T Consensus 413 IVSGaYDGkikvWdl~ 428 (499)
T KOG0281|consen 413 IVSGAYDGKIKVWDLQ 428 (499)
T ss_pred eeeccccceEEEEecc
Confidence 9999999999999974
No 28
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.8e-32 Score=246.50 Aligned_cols=240 Identities=20% Similarity=0.338 Sum_probs=191.2
Q ss_pred ceeeCC-CCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451 2 TCAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL 80 (267)
Q Consensus 2 ~~~~~~-~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 80 (267)
+++|+| ++.+|++++.|++|++||+... .....+.+|.+.|++++|+|.++.+|++|+.|++|++||+.++.
T Consensus 537 ~l~~~~~~~~~las~~~Dg~v~lWd~~~~-------~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~ 609 (793)
T PLN00181 537 GICWNSYIKSQVASSNFEGVVQVWDVARS-------QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV 609 (793)
T ss_pred eEEeccCCCCEEEEEeCCCeEEEEECCCC-------eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc
Confidence 456775 5789999999999999998642 24566789999999999998656789999999999999999876
Q ss_pred eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCC
Q 024451 81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG 160 (267)
Q Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~ 160 (267)
....+. +...+.++.|.++++.++++|+.|+.|++||++........+.+|...|.++.|. ++.++++++.|+
T Consensus 610 ~~~~~~------~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~ 682 (793)
T PLN00181 610 SIGTIK------TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDN 682 (793)
T ss_pred EEEEEe------cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCC
Confidence 655542 2346888999777788999999999999999975544566677899999999997 678999999999
Q ss_pred cEEEEeCCCC------eeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeec--c------c-
Q 024451 161 TCRLFDIRTG------HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL--G------S- 225 (267)
Q Consensus 161 ~i~iwd~~~~------~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~--~------~- 225 (267)
+|++||++.. +.+..+. .+...+..++|++++.+|++|+.||.+++|+.......... . .
T Consensus 683 ~ikiWd~~~~~~~~~~~~l~~~~-----gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~ 757 (793)
T PLN00181 683 TLKLWDLSMSISGINETPLHSFM-----GHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGL 757 (793)
T ss_pred EEEEEeCCCCccccCCcceEEEc-----CCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCccccc
Confidence 9999999753 2222221 22345788999999999999999999999997544322111 0 0
Q ss_pred ccCCccceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451 226 LQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF 260 (267)
Q Consensus 226 ~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~ 260 (267)
....|...|.+++|+|++.+|++|+.||.|+||++
T Consensus 758 ~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 758 EVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred ccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 01235678999999999999999999999999986
No 29
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.2e-33 Score=215.47 Aligned_cols=236 Identities=26% Similarity=0.450 Sum_probs=203.4
Q ss_pred CceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451 1 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL 80 (267)
Q Consensus 1 ~~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 80 (267)
++++|+..|++|++++.|-.+++||.+.. ..+.+.+.+|.-.|.++.|.|.+ .+++|++.|.+|++|+..++.
T Consensus 154 ~di~~~a~Gk~l~tcSsDl~~~LWd~~~~------~~c~ks~~gh~h~vS~V~f~P~g-d~ilS~srD~tik~We~~tg~ 226 (406)
T KOG0295|consen 154 FDISFDASGKYLATCSSDLSAKLWDFDTF------FRCIKSLIGHEHGVSSVFFLPLG-DHILSCSRDNTIKAWECDTGY 226 (406)
T ss_pred eEEEEecCccEEEecCCccchhheeHHHH------HHHHHHhcCcccceeeEEEEecC-CeeeecccccceeEEecccce
Confidence 46889999999999999999999998642 23667889999999999999986 589999999999999999999
Q ss_pred eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecC----------C
Q 024451 81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD----------G 150 (267)
Q Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~----------~ 150 (267)
.+.++. +|..-+..+.++. ++.++++++.|.++++|-+.. ......+..|+-+|.+++|.|. +
T Consensus 227 cv~t~~-----~h~ewvr~v~v~~-DGti~As~s~dqtl~vW~~~t-~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~ 299 (406)
T KOG0295|consen 227 CVKTFP-----GHSEWVRMVRVNQ-DGTIIASCSNDQTLRVWVVAT-KQCKAELREHEHPVECIAWAPESSYPSISEATG 299 (406)
T ss_pred eEEecc-----CchHhEEEEEecC-CeeEEEecCCCceEEEEEecc-chhhhhhhccccceEEEEecccccCcchhhccC
Confidence 988874 6888888888874 678999999999999998864 3344567788888999988653 1
Q ss_pred -----CEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeeccc
Q 024451 151 -----NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS 225 (267)
Q Consensus 151 -----~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~ 225 (267)
.++++++.|++||+||+.++.++..+.. +...|..++|+|.|+||+++..|+.+++||++..+.....
T Consensus 300 ~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~g-----hdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~-- 372 (406)
T KOG0295|consen 300 STNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVG-----HDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTL-- 372 (406)
T ss_pred CCCCccEEEeecccceEEEEeccCCeEEEEEec-----ccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeecc--
Confidence 4789999999999999999988776543 2347999999999999999999999999999887766554
Q ss_pred ccCCccceEEEEEECCCCCeEEEeECCCcEEEEe
Q 024451 226 LQNSHEGRITCLGLSADGSALCTGSWDTNLKIWA 259 (267)
Q Consensus 226 ~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~ 259 (267)
..|+.-+++++|+.+..++++|+-|.++++|-
T Consensus 373 --~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 373 --EAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred --CCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 46888999999999999999999999999994
No 30
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=2.6e-32 Score=245.50 Aligned_cols=242 Identities=19% Similarity=0.312 Sum_probs=188.4
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCC--CCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCC
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDK--DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG 79 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~--~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~ 79 (267)
+++|+|+|+++++||.|++|++|+....... ....+ ...+. +...|.++.|+|....+|++++.|++|++||+.++
T Consensus 488 ~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~-~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~ 565 (793)
T PLN00181 488 AIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYP-VVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARS 565 (793)
T ss_pred EEEECCCCCEEEEEeCCCEEEEEECCcccccccccccc-eEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCC
Confidence 4789999999999999999999997532110 00011 11222 34678999999866678999999999999999987
Q ss_pred eeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEe-cCCCEEEEeeC
Q 024451 80 LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFF-PDGNRFGTGSD 158 (267)
Q Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~ 158 (267)
.....+ .+|...|.+++|++.++.++++++.|+.|++||++.. .....+..+ ..+.++.|+ +++.++++|+.
T Consensus 566 ~~~~~~-----~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~-~~~~~~~~~-~~v~~v~~~~~~g~~latgs~ 638 (793)
T PLN00181 566 QLVTEM-----KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQG-VSIGTIKTK-ANICCVQFPSESGRSLAFGSA 638 (793)
T ss_pred eEEEEe-----cCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCC-cEEEEEecC-CCeEEEEEeCCCCCEEEEEeC
Confidence 665554 4689999999999777788999999999999999753 345555544 578999995 46899999999
Q ss_pred CCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCcc------ceeeecccccCCccc
Q 024451 159 DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA------KVVLNLGSLQNSHEG 232 (267)
Q Consensus 159 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~------~~~~~~~~~~~~~~~ 232 (267)
|+.|++||+++.+...... ..+...|.++.|. ++.++++++.|+.|++||+... +.+..+ ..|..
T Consensus 639 dg~I~iwD~~~~~~~~~~~----~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~----~gh~~ 709 (793)
T PLN00181 639 DHKVYYYDLRNPKLPLCTM----IGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSF----MGHTN 709 (793)
T ss_pred CCeEEEEECCCCCccceEe----cCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEE----cCCCC
Confidence 9999999998765322111 1234568999997 7789999999999999998643 222222 46888
Q ss_pred eEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451 233 RITCLGLSADGSALCTGSWDTNLKIWAFG 261 (267)
Q Consensus 233 ~v~~~~~~p~~~~l~sgs~dg~i~~w~~~ 261 (267)
.+.+++|+|++++||+|+.|+.|++|+..
T Consensus 710 ~i~~v~~s~~~~~lasgs~D~~v~iw~~~ 738 (793)
T PLN00181 710 VKNFVGLSVSDGYIATGSETNEVFVYHKA 738 (793)
T ss_pred CeeEEEEcCCCCEEEEEeCCCEEEEEECC
Confidence 89999999999999999999999999853
No 31
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.4e-33 Score=215.06 Aligned_cols=233 Identities=24% Similarity=0.434 Sum_probs=199.2
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
|+++.|...+++||+.|++++|||+... .+..++.||..-|..+++++. ..|+++++.|+.|+.||++..+.
T Consensus 156 ~vavdP~n~wf~tgs~DrtikIwDlatg-------~LkltltGhi~~vr~vavS~r-HpYlFs~gedk~VKCwDLe~nkv 227 (460)
T KOG0285|consen 156 SVAVDPGNEWFATGSADRTIKIWDLATG-------QLKLTLTGHIETVRGVAVSKR-HPYLFSAGEDKQVKCWDLEYNKV 227 (460)
T ss_pred EEeeCCCceeEEecCCCceeEEEEcccC-------eEEEeecchhheeeeeeeccc-CceEEEecCCCeeEEEechhhhh
Confidence 5789999999999999999999999763 256788999999999999985 46999999999999999987654
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT 161 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 161 (267)
+..+ -||-..|.+++.+|. ...+++++.|.++|+||++. +..+..+.+|..+|.++.+.|....+++|+.|++
T Consensus 228 IR~Y-----hGHlS~V~~L~lhPT-ldvl~t~grDst~RvWDiRt-r~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~t 300 (460)
T KOG0285|consen 228 IRHY-----HGHLSGVYCLDLHPT-LDVLVTGGRDSTIRVWDIRT-RASVHVLSGHTNPVASVMCQPTDPQVITGSHDST 300 (460)
T ss_pred HHHh-----ccccceeEEEecccc-ceeEEecCCcceEEEeeecc-cceEEEecCCCCcceeEEeecCCCceEEecCCce
Confidence 4332 478899999999975 45789999999999999985 4567889999999999999998889999999999
Q ss_pred EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECC
Q 024451 162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA 241 (267)
Q Consensus 162 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p 241 (267)
|++||++.++.+..+.. +...+.+++.+|....+++++.| .++-|++..+..+.++ ..|.+-|++++.+.
T Consensus 301 vrlWDl~agkt~~tlt~-----hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nl----sgh~~iintl~~ns 370 (460)
T KOG0285|consen 301 VRLWDLRAGKTMITLTH-----HKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNL----SGHNAIINTLSVNS 370 (460)
T ss_pred EEEeeeccCceeEeeec-----ccceeeEEecCCchhhhhccCCc-cceeccCCccchhhcc----ccccceeeeeeecc
Confidence 99999999987765532 23458999999999889988777 4789998887777664 57899999999987
Q ss_pred CCCeEEEeECCCcEEEEec
Q 024451 242 DGSALCTGSWDTNLKIWAF 260 (267)
Q Consensus 242 ~~~~l~sgs~dg~i~~w~~ 260 (267)
|| ++++|+..|.+-+||.
T Consensus 371 D~-v~~~G~dng~~~fwdw 388 (460)
T KOG0285|consen 371 DG-VLVSGGDNGSIMFWDW 388 (460)
T ss_pred Cc-eEEEcCCceEEEEEec
Confidence 65 7788999999999986
No 32
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3.7e-32 Score=217.59 Aligned_cols=248 Identities=24% Similarity=0.413 Sum_probs=189.9
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
|.-|+|||..++|+|.||++.+||-...+ . +.....-.+|++.|++++|+|+. ..++++|.|.++||||+.+...
T Consensus 195 ~VRysPDG~~Fat~gsDgki~iyDGktge-~---vg~l~~~~aHkGsIfalsWsPDs-~~~~T~SaDkt~KIWdVs~~sl 269 (603)
T KOG0318|consen 195 CVRYSPDGSRFATAGSDGKIYIYDGKTGE-K---VGELEDSDAHKGSIFALSWSPDS-TQFLTVSADKTIKIWDVSTNSL 269 (603)
T ss_pred eEEECCCCCeEEEecCCccEEEEcCCCcc-E---EEEecCCCCccccEEEEEECCCC-ceEEEecCCceEEEEEeeccce
Confidence 56799999999999999999999976532 1 11122245899999999999986 4799999999999999987654
Q ss_pred EEEeCC--------------------------------------ccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEe
Q 024451 82 TSVFGG--------------------------------------EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWD 123 (267)
Q Consensus 82 ~~~~~~--------------------------------------~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd 123 (267)
+..+.. ....+|...|+++..++. +..+.+|+.||.|.-|+
T Consensus 270 v~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d-~~~i~SgsyDG~I~~W~ 348 (603)
T KOG0318|consen 270 VSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPD-GKTIYSGSYDGHINSWD 348 (603)
T ss_pred EEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCC-CCEEEeeccCceEEEEe
Confidence 443321 112589999999999975 47889999999999998
Q ss_pred CCCccc-----------------------------------------------------c-------------------e
Q 024451 124 TRVASR-----------------------------------------------------A-------------------V 131 (267)
Q Consensus 124 ~~~~~~-----------------------------------------------------~-------------------~ 131 (267)
...+.. + +
T Consensus 349 ~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~i 428 (603)
T KOG0318|consen 349 SGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDI 428 (603)
T ss_pred cCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcE
Confidence 632100 0 0
Q ss_pred EEeeccc--------cceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEE
Q 024451 132 RTFHGHE--------GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG 203 (267)
Q Consensus 132 ~~~~~~~--------~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g 203 (267)
..++.+. -...+++++|+++.++.|++|++++||.+........... ..+..+++.++|||++.+|++|
T Consensus 429 v~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~---~~h~a~iT~vaySpd~~yla~~ 505 (603)
T KOG0318|consen 429 VLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKL---LEHRAAITDVAYSPDGAYLAAG 505 (603)
T ss_pred EEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeee---ecccCCceEEEECCCCcEEEEe
Confidence 0111111 1135688899999999999999999999976543322111 2234679999999999999999
Q ss_pred EeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451 204 YSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG 261 (267)
Q Consensus 204 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~ 261 (267)
...+.+.+||....+...+ ++ .-|...|.|++|+|+.+++|+||.|..|.||.+.
T Consensus 506 Da~rkvv~yd~~s~~~~~~--~w-~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~ 560 (603)
T KOG0318|consen 506 DASRKVVLYDVASREVKTN--RW-AFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVK 560 (603)
T ss_pred ccCCcEEEEEcccCceecc--ee-eeeeeeEEEEEeCCCceEEEeccccceEEEEEcc
Confidence 9999999999988776322 22 2389999999999999999999999999999864
No 33
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.3e-33 Score=201.21 Aligned_cols=233 Identities=25% Similarity=0.399 Sum_probs=193.8
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
+..|+-+|++.+++|.|++|++|+.... .+.+++.+|..+|..++.+.++ ..+++|+.|+.+.+||+++++.
T Consensus 22 avryN~dGnY~ltcGsdrtvrLWNp~rg-------~liktYsghG~EVlD~~~s~Dn-skf~s~GgDk~v~vwDV~TGkv 93 (307)
T KOG0316|consen 22 AVRYNVDGNYCLTCGSDRTVRLWNPLRG-------ALIKTYSGHGHEVLDAALSSDN-SKFASCGGDKAVQVWDVNTGKV 93 (307)
T ss_pred EEEEccCCCEEEEcCCCceEEeeccccc-------ceeeeecCCCceeeeccccccc-cccccCCCCceEEEEEcccCee
Confidence 3568999999999999999999997542 3788999999999999888765 4699999999999999999987
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcc-cceEEeeccccceeEEEEecCCCEEEEeeCCC
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS-RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG 160 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~ 160 (267)
...+ .+|...|+.+.|++. ...+++|+.|.++++||.+... +++..+..-.+.|.++... +..+++|+.||
T Consensus 94 ~Rr~-----rgH~aqVNtV~fNee-sSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DG 165 (307)
T KOG0316|consen 94 DRRF-----RGHLAQVNTVRFNEE-SSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDG 165 (307)
T ss_pred eeec-----ccccceeeEEEecCc-ceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCC
Confidence 7766 479999999999964 5688999999999999988543 4666666667889988875 45799999999
Q ss_pred cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccc--eEEEEE
Q 024451 161 TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEG--RITCLG 238 (267)
Q Consensus 161 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--~v~~~~ 238 (267)
++|.||++.++...-++ ..+|++++|++++++.++++.|+.+++.|..+++.+.... +|.. .-...+
T Consensus 166 tvRtydiR~G~l~sDy~-------g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYk----Ghkn~eykldc~ 234 (307)
T KOG0316|consen 166 TVRTYDIRKGTLSSDYF-------GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYK----GHKNMEYKLDCC 234 (307)
T ss_pred cEEEEEeecceeehhhc-------CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhc----ccccceeeeeee
Confidence 99999999987654332 2369999999999999999999999999999998876553 3432 223456
Q ss_pred ECCCCCeEEEeECCCcEEEEecC
Q 024451 239 LSADGSALCTGSWDTNLKIWAFG 261 (267)
Q Consensus 239 ~~p~~~~l~sgs~dg~i~~w~~~ 261 (267)
++....++++||+||.+.+|++-
T Consensus 235 l~qsdthV~sgSEDG~Vy~wdLv 257 (307)
T KOG0316|consen 235 LNQSDTHVFSGSEDGKVYFWDLV 257 (307)
T ss_pred ecccceeEEeccCCceEEEEEec
Confidence 67777899999999999999973
No 34
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=3.2e-31 Score=223.40 Aligned_cols=251 Identities=18% Similarity=0.203 Sum_probs=184.2
Q ss_pred eCCCCCeEEEccCCCeEEEeecCCC-----CCCCCCCc-ccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCC
Q 024451 5 FSPTGQSVACGGLDSVCSIFNLNSP-----TDKDGNLP-VSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT 78 (267)
Q Consensus 5 ~~~~g~~l~~~~~d~~v~~w~~~~~-----~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 78 (267)
.++++..+++++.+.....|+.... ....+..+ ....+.+|.+.|++++|+|.++.+|++|+.|++|++||+.+
T Consensus 28 ~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~ 107 (493)
T PTZ00421 28 ALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPE 107 (493)
T ss_pred ccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCC
Confidence 4577777888888888888875431 11112211 12347899999999999995556899999999999999976
Q ss_pred CeeEEE--eCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEe
Q 024451 79 GLRTSV--FGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTG 156 (267)
Q Consensus 79 ~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 156 (267)
+..... -......+|...|.+++|+|....++++++.|+.|++||++.. .....+.+|...|.+++|+|++++|+++
T Consensus 108 ~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg-~~~~~l~~h~~~V~sla~spdG~lLatg 186 (493)
T PTZ00421 108 EGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERG-KAVEVIKCHSDQITSLEWNLDGSLLCTT 186 (493)
T ss_pred CccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCC-eEEEEEcCCCCceEEEEEECCCCEEEEe
Confidence 421100 0001225799999999999876678999999999999999754 4566778899999999999999999999
Q ss_pred eCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEE----eCCeEEEEeCCccceeeecccccCCccc
Q 024451 157 SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY----SNGDCYVWDTLLAKVVLNLGSLQNSHEG 232 (267)
Q Consensus 157 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~----~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 232 (267)
+.|++|++||+++++.+..+.. +. ......+.|.+++..+++++ .|+.|++||++.......... ..+..
T Consensus 187 s~Dg~IrIwD~rsg~~v~tl~~-H~---~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~--~d~~~ 260 (493)
T PTZ00421 187 SKDKKLNIIDPRDGTIVSSVEA-HA---SAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVD--LDQSS 260 (493)
T ss_pred cCCCEEEEEECCCCcEEEEEec-CC---CCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEec--cCCCC
Confidence 9999999999998876554332 21 12245677888877776643 479999999876543222211 12334
Q ss_pred eEEEEEECCCCCeEEEeEC-CCcEEEEecCc
Q 024451 233 RITCLGLSADGSALCTGSW-DTNLKIWAFGG 262 (267)
Q Consensus 233 ~v~~~~~~p~~~~l~sgs~-dg~i~~w~~~~ 262 (267)
.+....|+|++++|++|+. |+.|++|++..
T Consensus 261 ~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~ 291 (493)
T PTZ00421 261 ALFIPFFDEDTNLLYIGSKGEGNIRCFELMN 291 (493)
T ss_pred ceEEEEEcCCCCEEEEEEeCCCeEEEEEeeC
Confidence 5666789999999998885 99999999854
No 35
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=4.9e-32 Score=198.62 Aligned_cols=232 Identities=26% Similarity=0.448 Sum_probs=184.8
Q ss_pred CeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee--EEEeCC
Q 024451 10 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR--TSVFGG 87 (267)
Q Consensus 10 ~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~--~~~~~~ 87 (267)
-+|+++|.|-+||.|..... .+.++++-..+.|..+...|++ ..|++| ....||+||+++... +..|
T Consensus 11 viLvsA~YDhTIRfWqa~tG-------~C~rTiqh~dsqVNrLeiTpdk-~~LAaa-~~qhvRlyD~~S~np~Pv~t~-- 79 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTG-------ICSRTIQHPDSQVNRLEITPDK-KDLAAA-GNQHVRLYDLNSNNPNPVATF-- 79 (311)
T ss_pred eEEEeccCcceeeeeehhcC-------eEEEEEecCccceeeEEEcCCc-chhhhc-cCCeeEEEEccCCCCCceeEE--
Confidence 57999999999999987642 3677776566789999999975 456555 456899999998654 3333
Q ss_pred ccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeC
Q 024451 88 EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDI 167 (267)
Q Consensus 88 ~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~ 167 (267)
.+|...|.++.|.. +++.+.+|+.||++||||++.. ...+.+ .|..+|+++..+|+...|++|.++|.|++||+
T Consensus 80 ---e~h~kNVtaVgF~~-dgrWMyTgseDgt~kIWdlR~~-~~qR~~-~~~spVn~vvlhpnQteLis~dqsg~irvWDl 153 (311)
T KOG0315|consen 80 ---EGHTKNVTAVGFQC-DGRWMYTGSEDGTVKIWDLRSL-SCQRNY-QHNSPVNTVVLHPNQTELISGDQSGNIRVWDL 153 (311)
T ss_pred ---eccCCceEEEEEee-cCeEEEecCCCceEEEEeccCc-ccchhc-cCCCCcceEEecCCcceEEeecCCCcEEEEEc
Confidence 36889999999985 6789999999999999999852 233444 47899999999999999999999999999999
Q ss_pred CCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceee---ecccccCCccceEEEEEECCCCC
Q 024451 168 RTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVL---NLGSLQNSHEGRITCLGLSADGS 244 (267)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~---~~~~~~~~~~~~v~~~~~~p~~~ 244 (267)
....+...+..+ ....+.++...|+|.+++++.+.|..++|++....... .... .+.|++-+..+-+||+++
T Consensus 154 ~~~~c~~~liPe----~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k-~~ah~~~il~C~lSPd~k 228 (311)
T KOG0315|consen 154 GENSCTHELIPE----DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHK-FQAHNGHILRCLLSPDVK 228 (311)
T ss_pred cCCccccccCCC----CCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhh-eecccceEEEEEECCCCc
Confidence 877554433222 22468999999999999999999999999986532211 1111 246899999999999999
Q ss_pred eEEEeECCCcEEEEecCce
Q 024451 245 ALCTGSWDTNLKIWAFGGY 263 (267)
Q Consensus 245 ~l~sgs~dg~i~~w~~~~~ 263 (267)
+||++|.|.+++||...++
T Consensus 229 ~lat~ssdktv~iwn~~~~ 247 (311)
T KOG0315|consen 229 YLATCSSDKTVKIWNTDDF 247 (311)
T ss_pred EEEeecCCceEEEEecCCc
Confidence 9999999999999987766
No 36
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=4.9e-34 Score=216.76 Aligned_cols=247 Identities=26% Similarity=0.377 Sum_probs=199.4
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCC-CCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPT-DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL 80 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~-~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 80 (267)
|.-|+|||++|++|+.||-+.+||+.... .++.+......+..+..+|.|+.|+.+. +.+++|+.||.|++|.++++.
T Consensus 218 cA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDs-EMlAsGsqDGkIKvWri~tG~ 296 (508)
T KOG0275|consen 218 CARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDS-EMLASGSQDGKIKVWRIETGQ 296 (508)
T ss_pred heeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccH-HHhhccCcCCcEEEEEEecch
Confidence 34599999999999999999999987531 1111112233455688999999999875 579999999999999999998
Q ss_pred eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCC
Q 024451 81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG 160 (267)
Q Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~ 160 (267)
+...| ..+|...|.++.|+..+ ..+++++.|.++|+.-++. .+..+.+++|..-|+.+.|.++|.++++++.||
T Consensus 297 ClRrF----drAHtkGvt~l~FSrD~-SqiLS~sfD~tvRiHGlKS-GK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDg 370 (508)
T KOG0275|consen 297 CLRRF----DRAHTKGVTCLSFSRDN-SQILSASFDQTVRIHGLKS-GKCLKEFRGHSSYVNEATFTDDGHHIISASSDG 370 (508)
T ss_pred HHHHh----hhhhccCeeEEEEccCc-chhhcccccceEEEecccc-chhHHHhcCccccccceEEcCCCCeEEEecCCc
Confidence 76654 35799999999999654 5678999999999999875 567888999999999999999999999999999
Q ss_pred cEEEEeCCCCeeeEEEEeecC------------------------------------------CCCCCcEEEEEEccCCC
Q 024451 161 TCRLFDIRTGHQLQVYYQQHG------------------------------------------ENEIPHVTSIAFSISGR 198 (267)
Q Consensus 161 ~i~iwd~~~~~~~~~~~~~~~------------------------------------------~~~~~~v~~~~~s~~~~ 198 (267)
+|++|+.++.+++..+..... ..+.+...+.+.||.|.
T Consensus 371 tvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGe 450 (508)
T KOG0275|consen 371 TVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGE 450 (508)
T ss_pred cEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCc
Confidence 999999988655433321100 00112234567899999
Q ss_pred EEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEe
Q 024451 199 LLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWA 259 (267)
Q Consensus 199 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~ 259 (267)
++.+.++|+.++-|...+++....+ ..|+..+..++-+|..+.||+-+.||.+++|.
T Consensus 451 wiYcigED~vlYCF~~~sG~LE~tl----~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 451 WIYCIGEDGVLYCFSVLSGKLERTL----PVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred EEEEEccCcEEEEEEeecCceeeee----ecccccccccccCcccchhhhhcccchhhhcC
Confidence 9999999999999999888776544 46888899999999999999999999999995
No 37
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-31 Score=197.98 Aligned_cols=241 Identities=22% Similarity=0.352 Sum_probs=193.8
Q ss_pred eeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeE
Q 024451 3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT 82 (267)
Q Consensus 3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 82 (267)
+.|+.+|.+|.++++|.+..+|-.... ....++.||++.|+||...-+. .++++|+.|.++++||+++++++
T Consensus 16 iKyN~eGDLlFscaKD~~~~vw~s~nG-------erlGty~GHtGavW~~Did~~s-~~liTGSAD~t~kLWDv~tGk~l 87 (327)
T KOG0643|consen 16 IKYNREGDLLFSCAKDSTPTVWYSLNG-------ERLGTYDGHTGAVWCCDIDWDS-KHLITGSADQTAKLWDVETGKQL 87 (327)
T ss_pred EEecCCCcEEEEecCCCCceEEEecCC-------ceeeeecCCCceEEEEEecCCc-ceeeeccccceeEEEEcCCCcEE
Confidence 578999999999999999999975332 3677899999999999998754 58999999999999999999887
Q ss_pred EEeCCccccCCccceEEEEEeCCCCeEEEEe----cCCCeEEEEeCCCcc------cceEEeeccccceeEEEEecCCCE
Q 024451 83 SVFGGEFQSGHTADVLSVSISGSNSRMFVSG----SCDSTARLWDTRVAS------RAVRTFHGHEGDVNTVKFFPDGNR 152 (267)
Q Consensus 83 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~----~~d~~i~iwd~~~~~------~~~~~~~~~~~~i~~~~~~~~~~~ 152 (267)
..+. -...+..+.|+..+...+++. +..+.|.++|++... .+...+..+...++.+.|.|-+++
T Consensus 88 a~~k------~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ 161 (327)
T KOG0643|consen 88 ATWK------TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGET 161 (327)
T ss_pred EEee------cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCE
Confidence 7663 345688888987655444432 456789999987432 345666677889999999999999
Q ss_pred EEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeec---------
Q 024451 153 FGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL--------- 223 (267)
Q Consensus 153 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~--------- 223 (267)
+++|.+||.|.+||.+++++.....+.| ...|+.++++++..++++|+.|..-++||..+...+..+
T Consensus 162 ii~Ghe~G~is~~da~~g~~~v~s~~~h----~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~a 237 (327)
T KOG0643|consen 162 IIAGHEDGSISIYDARTGKELVDSDEEH----SSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTA 237 (327)
T ss_pred EEEecCCCcEEEEEcccCceeeechhhh----ccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccce
Confidence 9999999999999999987665433333 336999999999999999999999999997554322110
Q ss_pred ------------------------------------------ccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451 224 ------------------------------------------GSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG 261 (267)
Q Consensus 224 ------------------------------------------~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~ 261 (267)
....++|-++|++++|+|+|+..+||+.||.||+..|.
T Consensus 238 aisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 238 AISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred ecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence 01123588999999999999999999999999998764
No 38
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=2.5e-32 Score=210.65 Aligned_cols=236 Identities=24% Similarity=0.385 Sum_probs=186.6
Q ss_pred CCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCC--CeeEEEeeCCCeEEEEeCCCCeeEEEeC
Q 024451 9 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE--DTHLITSSGDQTCVLWDITTGLRTSVFG 86 (267)
Q Consensus 9 g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~~l~s~~~d~~v~iwd~~~~~~~~~~~ 86 (267)
+++|+||++||++++||... +....+.||.++|.++++...+ ...++++|.|.++++|..+.+.......
T Consensus 115 ~~~IltgsYDg~~riWd~~G--------k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~ 186 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDLKG--------KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKAL 186 (423)
T ss_pred CceEEEeecCCeeEEEecCC--------ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHH
Confidence 68999999999999999864 3567788999999998886433 2358999999999999887664322111
Q ss_pred CccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCc------------------------ccceEEeecccccee
Q 024451 87 GEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA------------------------SRAVRTFHGHEGDVN 142 (267)
Q Consensus 87 ~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~------------------------~~~~~~~~~~~~~i~ 142 (267)
....||+..|.++...++ +..+++|+.|..|+||+.... +.++..+.+|..+|.
T Consensus 187 -~~~~GHk~~V~sVsv~~s-gtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs 264 (423)
T KOG0313|consen 187 -KVCRGHKRSVDSVSVDSS-GTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVS 264 (423)
T ss_pred -hHhcccccceeEEEecCC-CCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccccccee
Confidence 112489999999999865 557899999999999983211 124557789999999
Q ss_pred EEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeee
Q 024451 143 TVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLN 222 (267)
Q Consensus 143 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~ 222 (267)
++.|++ ...+.+++.|.+|+.||+.+++........ ....++..+|....|++|++|..+++||.+.+..-..
T Consensus 265 ~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~------ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v 337 (423)
T KOG0313|consen 265 SVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTN------KSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVV 337 (423)
T ss_pred eEEEcC-CCceEeecccceEEEEEeecccceeeeecC------cceeEeecccccceeeecCCCCceeecCCCCCCCcee
Confidence 999987 678999999999999999998876654321 2478999999999999999999999999876532111
Q ss_pred cccccCCccceEEEEEECCCCC-eEEEeECCCcEEEEecCc
Q 024451 223 LGSLQNSHEGRITCLGLSADGS-ALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 223 ~~~~~~~~~~~v~~~~~~p~~~-~l~sgs~dg~i~~w~~~~ 262 (267)
... ..+|...|.++.|+|... +|++||.|+++++||...
T Consensus 338 ~~s-~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS 377 (423)
T KOG0313|consen 338 SQS-LIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRS 377 (423)
T ss_pred EEe-eecchhhhhheecCCCCceEEEEEecCCeEEEEEecc
Confidence 111 147999999999999655 578999999999999754
No 39
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=6.5e-31 Score=201.97 Aligned_cols=240 Identities=24% Similarity=0.417 Sum_probs=196.1
Q ss_pred CceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451 1 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL 80 (267)
Q Consensus 1 ~~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 80 (267)
++++.+|+.++++|||.|....+|+.... +....+.+|+..|+|+.|+.++ .+||||+.+|.|+||+..++.
T Consensus 68 Favsl~P~~~l~aTGGgDD~AflW~~~~g-------e~~~eltgHKDSVt~~~Fshdg-tlLATGdmsG~v~v~~~stg~ 139 (399)
T KOG0296|consen 68 FAVSLHPNNNLVATGGGDDLAFLWDISTG-------EFAGELTGHKDSVTCCSFSHDG-TLLATGDMSGKVLVFKVSTGG 139 (399)
T ss_pred EEEEeCCCCceEEecCCCceEEEEEccCC-------cceeEecCCCCceEEEEEccCc-eEEEecCCCccEEEEEcccCc
Confidence 47889999999999999999999998653 2556788999999999999865 699999999999999999987
Q ss_pred eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCC
Q 024451 81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG 160 (267)
Q Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~ 160 (267)
....+. .--..+.-+.|+| ..++++.|+.||.+-+|.+... ...+.+.+|+.++++=.|.|+|+.++++..||
T Consensus 140 ~~~~~~-----~e~~dieWl~WHp-~a~illAG~~DGsvWmw~ip~~-~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dg 212 (399)
T KOG0296|consen 140 EQWKLD-----QEVEDIEWLKWHP-RAHILLAGSTDGSVWMWQIPSQ-ALCKVMSGHNSPCTCGEFIPDGKRILTGYDDG 212 (399)
T ss_pred eEEEee-----cccCceEEEEecc-cccEEEeecCCCcEEEEECCCc-ceeeEecCCCCCcccccccCCCceEEEEecCc
Confidence 665552 2234677888997 5788999999999999998743 56788899999999999999999999999999
Q ss_pred cEEEEeCCCCeeeEEEEeecC-CC--------------------------------------------------------
Q 024451 161 TCRLFDIRTGHQLQVYYQQHG-EN-------------------------------------------------------- 183 (267)
Q Consensus 161 ~i~iwd~~~~~~~~~~~~~~~-~~-------------------------------------------------------- 183 (267)
+|++||+++++++....+... ..
T Consensus 213 ti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~ 292 (399)
T KOG0296|consen 213 TIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESI 292 (399)
T ss_pred eEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhc
Confidence 999999998866543321000 00
Q ss_pred ---------------------------------CCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCc
Q 024451 184 ---------------------------------EIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSH 230 (267)
Q Consensus 184 ---------------------------------~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~ 230 (267)
+...|..+.|-+ ..+|++++.+|.|++||.+++...... .+|
T Consensus 293 ~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y----~GH 367 (399)
T KOG0296|consen 293 PSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTY----TGH 367 (399)
T ss_pred ccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEE----ecC
Confidence 112345566665 567888888888888888888776654 579
Q ss_pred cceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451 231 EGRITCLGLSADGSALCTGSWDTNLKIWAF 260 (267)
Q Consensus 231 ~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~ 260 (267)
...|.+++++|++++++++|.|++.++|..
T Consensus 368 ~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 368 QMGILDFALSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred chheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence 999999999999999999999999999974
No 40
>PTZ00420 coronin; Provisional
Probab=100.00 E-value=1.3e-30 Score=221.10 Aligned_cols=237 Identities=16% Similarity=0.199 Sum_probs=172.1
Q ss_pred EccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee-EEEe--CCccc
Q 024451 14 CGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR-TSVF--GGEFQ 90 (267)
Q Consensus 14 ~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~-~~~~--~~~~~ 90 (267)
+||.++.+++|+.... +....+.+|.+.|.+++|+|..+.+|++|+.|++|++||+.++.. ...+ .....
T Consensus 49 gGG~~gvI~L~~~~r~-------~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L 121 (568)
T PTZ00420 49 GGGLIGAIRLENQMRK-------PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCIL 121 (568)
T ss_pred CCCceeEEEeeecCCC-------ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEe
Confidence 3677888999986531 345678899999999999997667899999999999999976421 1000 00112
Q ss_pred cCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q 024451 91 SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG 170 (267)
Q Consensus 91 ~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 170 (267)
.+|...|.+++|+|....++++++.|+.|++||++... ....+. |...|.+++|+|+|++|++++.|+.|+|||++++
T Consensus 122 ~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~-~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg 199 (568)
T PTZ00420 122 KGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEK-RAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQ 199 (568)
T ss_pred ecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCc-EEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCC
Confidence 47889999999998766667899999999999998544 334443 5678999999999999999999999999999998
Q ss_pred eeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeC----CeEEEEeCCc-cceeeecccccCCccceEEEEEECCCCCe
Q 024451 171 HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN----GDCYVWDTLL-AKVVLNLGSLQNSHEGRITCLGLSADGSA 245 (267)
Q Consensus 171 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d----g~i~i~d~~~-~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 245 (267)
+.+..+..+........+....|++++.++++++.+ +.|+|||++. .+.+... .+ ..+.+.+......++|.+
T Consensus 200 ~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~-~l-d~~~~~L~p~~D~~tg~l 277 (568)
T PTZ00420 200 EIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTM-SI-DNASAPLIPHYDESTGLI 277 (568)
T ss_pred cEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEE-Ee-cCCccceEEeeeCCCCCE
Confidence 776554332211001122334567898888887765 4799999875 3333222 11 223445555555677999
Q ss_pred EEEeECCCcEEEEecC
Q 024451 246 LCTGSWDTNLKIWAFG 261 (267)
Q Consensus 246 l~sgs~dg~i~~w~~~ 261 (267)
+++|+.|+.|++|++.
T Consensus 278 ~lsGkGD~tIr~~e~~ 293 (568)
T PTZ00420 278 YLIGKGDGNCRYYQHS 293 (568)
T ss_pred EEEEECCCeEEEEEcc
Confidence 9999999999999873
No 41
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.4e-32 Score=219.65 Aligned_cols=233 Identities=23% Similarity=0.385 Sum_probs=197.4
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
+|.|-+-.+++++|+.|..||+|++.+. .....+.+|.+.|.|++.+|+. .+++|+|.|-+|++||.+..-.
T Consensus 60 a~kfiaRknWiv~GsDD~~IrVfnynt~-------ekV~~FeAH~DyIR~iavHPt~-P~vLtsSDDm~iKlW~we~~wa 131 (794)
T KOG0276|consen 60 AAKFIARKNWIVTGSDDMQIRVFNYNTG-------EKVKTFEAHSDYIRSIAVHPTL-PYVLTSSDDMTIKLWDWENEWA 131 (794)
T ss_pred hheeeeccceEEEecCCceEEEEecccc-------eeeEEeeccccceeeeeecCCC-CeEEecCCccEEEEeeccCcee
Confidence 4667778899999999999999998753 2456789999999999999975 6899999999999999987643
Q ss_pred -EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecC--CCEEEEeeC
Q 024451 82 -TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD--GNRFGTGSD 158 (267)
Q Consensus 82 -~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~ 158 (267)
..+| .+|+..|-++++.|.+...|++++-|++|++|++.. ..+...+.+|...|+|+.|-+. ..++++|+.
T Consensus 132 ~~qtf-----eGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs-~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaD 205 (794)
T KOG0276|consen 132 CEQTF-----EGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGS-PHPNFTLEGHEKGVNCVDYYTGGDKPYLISGAD 205 (794)
T ss_pred eeeEE-----cCcceEEEEEEecCCCccceeeeeccccEEEEEcCC-CCCceeeeccccCcceEEeccCCCcceEEecCC
Confidence 3333 489999999999999999999999999999999974 4467788999999999999874 469999999
Q ss_pred CCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEE
Q 024451 159 DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLG 238 (267)
Q Consensus 159 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~ 238 (267)
|.+++|||..+.++++.+. ++...|+.++|+|.-.++++|++||.++||+..+.+....+ ....++++|++
T Consensus 206 D~tiKvWDyQtk~CV~TLe-----GHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tL----n~gleRvW~I~ 276 (794)
T KOG0276|consen 206 DLTIKVWDYQTKSCVQTLE-----GHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTL----NYGLERVWCIA 276 (794)
T ss_pred CceEEEeecchHHHHHHhh-----cccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhh----hcCCceEEEEe
Confidence 9999999999988876542 33446999999999999999999999999998776654333 23557899999
Q ss_pred ECCCCCeEEEeECCCcEEE
Q 024451 239 LSADGSALCTGSWDTNLKI 257 (267)
Q Consensus 239 ~~p~~~~l~sgs~dg~i~~ 257 (267)
-.+.++.++.|..+|.|.+
T Consensus 277 ~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 277 AHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred ecCCCCeEEEeccCCcEEE
Confidence 9998888999988887654
No 42
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=2.6e-30 Score=205.25 Aligned_cols=237 Identities=35% Similarity=0.569 Sum_probs=195.1
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
+++|+|++++|++++.||.+++|+..... ....+.+|...+..+.|.|++ .++++++.|+.|++||+.++..
T Consensus 14 ~~~~~~~~~~l~~~~~~g~i~i~~~~~~~-------~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~~~~~~~~ 85 (289)
T cd00200 14 CVAFSPDGKLLATGSGDGTIKVWDLETGE-------LLRTLKGHTGPVRDVAASADG-TYLASGSSDKTIRLWDLETGEC 85 (289)
T ss_pred EEEEcCCCCEEEEeecCcEEEEEEeeCCC-------cEEEEecCCcceeEEEECCCC-CEEEEEcCCCeEEEEEcCcccc
Confidence 57899999999999999999999986532 345567899999999999976 5799999999999999987654
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT 161 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 161 (267)
...+ ..|...+.++.+.+. .+++++++.|+.+++||++. .+....+..|...+.++.|+|++.++++++.|+.
T Consensus 86 ~~~~-----~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~ 158 (289)
T cd00200 86 VRTL-----TGHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDVET-GKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGT 158 (289)
T ss_pred eEEE-----eccCCcEEEEEEcCC-CCEEEEecCCCeEEEEECCC-cEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCc
Confidence 4444 257778999999875 56777777799999999874 3456667788889999999999888888888999
Q ss_pred EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECC
Q 024451 162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA 241 (267)
Q Consensus 162 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p 241 (267)
+++||+++++....+.. +...+.+++|+|+++.+++++.+|.+++||....+....+ ..|...+.+++|+|
T Consensus 159 i~i~d~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~----~~~~~~i~~~~~~~ 229 (289)
T cd00200 159 IKLWDLRTGKCVATLTG-----HTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTL----RGHENGVNSVAFSP 229 (289)
T ss_pred EEEEEccccccceeEec-----CccccceEEECCCcCEEEEecCCCcEEEEECCCCceecch----hhcCCceEEEEEcC
Confidence 99999987766554431 2236899999999999999999999999998876655433 35777999999999
Q ss_pred CCCeEEEeECCCcEEEEecCc
Q 024451 242 DGSALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 242 ~~~~l~sgs~dg~i~~w~~~~ 262 (267)
++.++++++.||.+++|++..
T Consensus 230 ~~~~~~~~~~~~~i~i~~~~~ 250 (289)
T cd00200 230 DGYLLASGSEDGTIRVWDLRT 250 (289)
T ss_pred CCcEEEEEcCCCcEEEEEcCC
Confidence 999999998899999999763
No 43
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=2.3e-30 Score=205.60 Aligned_cols=234 Identities=38% Similarity=0.608 Sum_probs=192.7
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
.+.|+|+++.+++++.|+.+++|+.... .....+.+|...|.++.|.|+ ..++++++.|+.|++||+.++..
T Consensus 56 ~~~~~~~~~~l~~~~~~~~i~i~~~~~~-------~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~ 127 (289)
T cd00200 56 DVAASADGTYLASGSSDKTIRLWDLETG-------ECVRTLTGHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDVETGKC 127 (289)
T ss_pred EEEECCCCCEEEEEcCCCeEEEEEcCcc-------cceEEEeccCCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCcEE
Confidence 5789999999999999999999998752 134456688889999999997 45777777899999999987665
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT 161 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 161 (267)
...+. .|...+.++.+++. .+++++++.|+.+++||++. .+....+..|...+.++.|+|+++.+++++.|+.
T Consensus 128 ~~~~~-----~~~~~i~~~~~~~~-~~~l~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~ 200 (289)
T cd00200 128 LTTLR-----GHTDWVNSVAFSPD-GTFVASSSQDGTIKLWDLRT-GKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGT 200 (289)
T ss_pred EEEec-----cCCCcEEEEEEcCc-CCEEEEEcCCCcEEEEEccc-cccceeEecCccccceEEECCCcCEEEEecCCCc
Confidence 55442 57778999999875 56777777799999999874 3456667788889999999999999999999999
Q ss_pred EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECC
Q 024451 162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA 241 (267)
Q Consensus 162 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p 241 (267)
+++||++.++....+. .+...+.+++|++++.++++++.+|.+++||....+....+ ..|...+.+++|+|
T Consensus 201 i~i~d~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~----~~~~~~i~~~~~~~ 271 (289)
T cd00200 201 IKLWDLSTGKCLGTLR-----GHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTL----SGHTNSVTSLAWSP 271 (289)
T ss_pred EEEEECCCCceecchh-----hcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEc----cccCCcEEEEEECC
Confidence 9999998766544331 12236899999999888888888999999998876655444 36788999999999
Q ss_pred CCCeEEEeECCCcEEEEe
Q 024451 242 DGSALCTGSWDTNLKIWA 259 (267)
Q Consensus 242 ~~~~l~sgs~dg~i~~w~ 259 (267)
++++|++++.||.+++|+
T Consensus 272 ~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 272 DGKRLASGSADGTIRIWD 289 (289)
T ss_pred CCCEEEEecCCCeEEecC
Confidence 999999999999999995
No 44
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=5.1e-33 Score=203.98 Aligned_cols=241 Identities=25% Similarity=0.372 Sum_probs=193.5
Q ss_pred ceeeC---CCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCC
Q 024451 2 TCAFS---PTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT 78 (267)
Q Consensus 2 ~~~~~---~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 78 (267)
.++|+ |+|-.|++++.|+.--+=+-+. + ....++.||++.|+++..+.+ ....++++.|-+-++||.-+
T Consensus 19 dl~~s~itp~g~flisa~kd~~pmlr~g~t-----g--dwigtfeghkgavw~~~l~~n-a~~aasaaadftakvw~a~t 90 (334)
T KOG0278|consen 19 DLAFSPITPDGYFLISASKDGKPMLRNGDT-----G--DWIGTFEGHKGAVWSATLNKN-ATRAASAAADFTAKVWDAVT 90 (334)
T ss_pred EEeccCCCCCceEEEEeccCCCchhccCCC-----C--CcEEeeeccCcceeeeecCch-hhhhhhhcccchhhhhhhhh
Confidence 45665 6999999999998754443332 1 256789999999999888763 45678999999999999998
Q ss_pred CeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeC
Q 024451 79 GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD 158 (267)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 158 (267)
+..+..| .|..-|.+++|+. +.+.+++|+.++.+||||++....+...+.+|.+.|..+.|....+.+++...
T Consensus 91 gdelhsf------~hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSad 163 (334)
T KOG0278|consen 91 GDELHSF------EHKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSAD 163 (334)
T ss_pred hhhhhhh------hhhheeeeEEecc-cchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeecc
Confidence 8766554 3777888999986 45678999999999999998777778888999999999999998899999999
Q ss_pred CCcEEEEeCCCCeeeEEEEeecCCC----------------------------------CCCcEEEEEEccCCCEEEEEE
Q 024451 159 DGTCRLFDIRTGHQLQVYYQQHGEN----------------------------------EIPHVTSIAFSISGRLLFAGY 204 (267)
Q Consensus 159 d~~i~iwd~~~~~~~~~~~~~~~~~----------------------------------~~~~v~~~~~s~~~~~l~~g~ 204 (267)
|++||+||.+++...+.+...+... ....|.+.+++|+..++++|+
T Consensus 164 d~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGg 243 (334)
T KOG0278|consen 164 DKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGG 243 (334)
T ss_pred CCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCccccccccccCCCceEEecC
Confidence 9999999999988766543322110 012355667778888888888
Q ss_pred eCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451 205 SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF 260 (267)
Q Consensus 205 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~ 260 (267)
+|+.++-||..+++.+... .+.|.++|.|+.|+|+|+..|+||.||+|+||..
T Consensus 244 ed~~~~kfDy~TgeEi~~~---nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt 296 (334)
T KOG0278|consen 244 EDFKVYKFDYNTGEEIGSY---NKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQT 296 (334)
T ss_pred cceEEEEEeccCCceeeec---ccCCCCceEEEEECCCCceeeccCCCceEEEEEe
Confidence 8888888888877665432 3679999999999999999999999999999975
No 45
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-31 Score=217.46 Aligned_cols=239 Identities=22% Similarity=0.355 Sum_probs=203.6
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
++.|+|...+++++-..|.|.|||.++.. ..+.+.-..-+|.++.|.+.. +++++|+.|..||+|+.++.++
T Consensus 18 sVd~HPtePw~la~LynG~V~IWnyetqt-------mVksfeV~~~PvRa~kfiaRk-nWiv~GsDD~~IrVfnynt~ek 89 (794)
T KOG0276|consen 18 SVDFHPTEPWILAALYNGDVQIWNYETQT-------MVKSFEVSEVPVRAAKFIARK-NWIVTGSDDMQIRVFNYNTGEK 89 (794)
T ss_pred eeecCCCCceEEEeeecCeeEEEecccce-------eeeeeeecccchhhheeeecc-ceEEEecCCceEEEEeccccee
Confidence 46799999999999999999999987643 455666667889999999864 6999999999999999999999
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEec-CCCEEEEeeCCC
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDG 160 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~ 160 (267)
+..|. +|.+.|.+++++|. ..+++|++.|-.|++||-...=.....+.+|.--|.+++|.| |.+.||+++-|+
T Consensus 90 V~~Fe-----AH~DyIR~iavHPt-~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDr 163 (794)
T KOG0276|consen 90 VKTFE-----AHSDYIRSIAVHPT-LPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDR 163 (794)
T ss_pred eEEee-----ccccceeeeeecCC-CCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccc
Confidence 98884 69999999999974 568899999999999998754455677899999999999999 678999999999
Q ss_pred cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccC--CCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEE
Q 024451 161 TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS--GRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLG 238 (267)
Q Consensus 161 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~ 238 (267)
+|++|.+.+......+. .+...|.++++-+- ..+|++|+.|..+++||.++...+..+ .+|...|..+.
T Consensus 164 TVKVWslgs~~~nfTl~-----gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TL----eGHt~Nvs~v~ 234 (794)
T KOG0276|consen 164 TVKVWSLGSPHPNFTLE-----GHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTL----EGHTNNVSFVF 234 (794)
T ss_pred cEEEEEcCCCCCceeee-----ccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHh----hcccccceEEE
Confidence 99999998765544443 23346899998654 469999999999999999888777655 57889999999
Q ss_pred ECCCCCeEEEeECCCcEEEEecCce
Q 024451 239 LSADGSALCTGSWDTNLKIWAFGGY 263 (267)
Q Consensus 239 ~~p~~~~l~sgs~dg~i~~w~~~~~ 263 (267)
|+|.-.++++||.||++|||.-..+
T Consensus 235 fhp~lpiiisgsEDGTvriWhs~Ty 259 (794)
T KOG0276|consen 235 FHPELPIIISGSEDGTVRIWNSKTY 259 (794)
T ss_pred ecCCCcEEEEecCCccEEEecCcce
Confidence 9999999999999999999975443
No 46
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=6.4e-32 Score=203.95 Aligned_cols=250 Identities=26% Similarity=0.399 Sum_probs=199.9
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCC------C-----CCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCe
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNS------P-----TDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT 70 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~------~-----~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~ 70 (267)
+.+|+|||.+++||+.|.+|++.|++. + ......-|+.|++..|..+|.++.|+|.+ ..|++|+.|++
T Consensus 117 ~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre-~ILiS~srD~t 195 (430)
T KOG0640|consen 117 AAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE-TILISGSRDNT 195 (430)
T ss_pred eeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh-heEEeccCCCe
Confidence 357999999999999999999999872 1 11223347899999999999999999975 68999999999
Q ss_pred EEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccce--EEeeccccceeEEEEec
Q 024451 71 CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV--RTFHGHEGDVNTVKFFP 148 (267)
Q Consensus 71 v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~--~~~~~~~~~i~~~~~~~ 148 (267)
|+++|.........+. .......+.++.|+|. +.+++.|...-.+++||+++....+ ..-.+|.+.|+++.+++
T Consensus 196 vKlFDfsK~saKrA~K---~~qd~~~vrsiSfHPs-GefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~ 271 (430)
T KOG0640|consen 196 VKLFDFSKTSAKRAFK---VFQDTEPVRSISFHPS-GEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS 271 (430)
T ss_pred EEEEecccHHHHHHHH---HhhccceeeeEeecCC-CceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC
Confidence 9999997543222221 1124567899999975 5678888888999999997543211 12346889999999999
Q ss_pred CCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecc----
Q 024451 149 DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLG---- 224 (267)
Q Consensus 149 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~---- 224 (267)
.++..++++.||.|++||--+++++..+...|+. ..|.+..|+.+++++++.+.|..+++|.+.+++.+....
T Consensus 272 t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~g---sevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~ 348 (430)
T KOG0640|consen 272 TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGG---SEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGT 348 (430)
T ss_pred CccEEEEeccCCcEEeeccccHHHHHHHHhhcCC---ceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCc
Confidence 9999999999999999999888887766555543 468999999999999999999999999986655432210
Q ss_pred -----------------------------------------cccCCccceEEEEEECCCCCeEEEeECCCcEEEEe
Q 024451 225 -----------------------------------------SLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWA 259 (267)
Q Consensus 225 -----------------------------------------~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~ 259 (267)
.+.-+|++.+..+.-||.+.-+++||.|..+|+|.
T Consensus 349 tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 349 TGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWY 424 (430)
T ss_pred ccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeee
Confidence 11224899999999999999999999999999995
No 47
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8.4e-31 Score=217.80 Aligned_cols=239 Identities=23% Similarity=0.431 Sum_probs=198.2
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCC-CeEEEEeCCCCe
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD-QTCVLWDITTGL 80 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d-~~v~iwd~~~~~ 80 (267)
+++|++..++|++|-..|...+|.+..- .+...+.--..+|..+.|+..++ +|+.|+.. |.+-+|+.++..
T Consensus 270 aa~fH~~t~~lvvgFssG~f~LyelP~f-------~lih~LSis~~~I~t~~~N~tGD-WiA~g~~klgQLlVweWqsEs 341 (893)
T KOG0291|consen 270 AAAFHKGTNLLVVGFSSGEFGLYELPDF-------NLIHSLSISDQKILTVSFNSTGD-WIAFGCSKLGQLLVWEWQSES 341 (893)
T ss_pred eeeccCCceEEEEEecCCeeEEEecCCc-------eEEEEeecccceeeEEEecccCC-EEEEcCCccceEEEEEeeccc
Confidence 5779999999999999999999998652 24444444456788999988765 78877665 899999998764
Q ss_pred eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCC
Q 024451 81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG 160 (267)
Q Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~ 160 (267)
-+ + .+++|...+.+++++| ++++++||+.||+|||||... .-....+..|+..|+.+.|+..++.+++.+-||
T Consensus 342 YV--l---KQQgH~~~i~~l~YSp-Dgq~iaTG~eDgKVKvWn~~S-gfC~vTFteHts~Vt~v~f~~~g~~llssSLDG 414 (893)
T KOG0291|consen 342 YV--L---KQQGHSDRITSLAYSP-DGQLIATGAEDGKVKVWNTQS-GFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDG 414 (893)
T ss_pred ee--e---eccccccceeeEEECC-CCcEEEeccCCCcEEEEeccC-ceEEEEeccCCCceEEEEEEecCCEEEEeecCC
Confidence 32 2 1368999999999996 577899999999999999864 446778889999999999999999999999999
Q ss_pred cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCC-eEEEEeCCccceeeecccccCCccceEEEEEE
Q 024451 161 TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG-DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGL 239 (267)
Q Consensus 161 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~ 239 (267)
+||.||+........+.. .......+++.+|.|..+.+|..|. .|++|++++++.+..+ .+|++||.+++|
T Consensus 415 tVRAwDlkRYrNfRTft~----P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiL----sGHEgPVs~l~f 486 (893)
T KOG0291|consen 415 TVRAWDLKRYRNFRTFTS----PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDIL----SGHEGPVSGLSF 486 (893)
T ss_pred eEEeeeecccceeeeecC----CCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehh----cCCCCcceeeEE
Confidence 999999987666555433 2233568888999999999999886 8999999999877544 689999999999
Q ss_pred CCCCCeEEEeECCCcEEEEecCce
Q 024451 240 SADGSALCTGSWDTNLKIWAFGGY 263 (267)
Q Consensus 240 ~p~~~~l~sgs~dg~i~~w~~~~~ 263 (267)
+|++..||+||+|++||+|++.+.
T Consensus 487 ~~~~~~LaS~SWDkTVRiW~if~s 510 (893)
T KOG0291|consen 487 SPDGSLLASGSWDKTVRIWDIFSS 510 (893)
T ss_pred ccccCeEEeccccceEEEEEeecc
Confidence 999999999999999999997544
No 48
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=7.4e-31 Score=207.60 Aligned_cols=235 Identities=23% Similarity=0.375 Sum_probs=198.1
Q ss_pred CceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451 1 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL 80 (267)
Q Consensus 1 ~~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 80 (267)
+++.|+..|++|++++.|+++.+||..... ....+.-|..+--.|.|-.. ..+++++.|+.|+++.+....
T Consensus 280 ~slKWnk~G~yilS~~vD~ttilwd~~~g~-------~~q~f~~~s~~~lDVdW~~~--~~F~ts~td~~i~V~kv~~~~ 350 (524)
T KOG0273|consen 280 FSLKWNKKGTYILSGGVDGTTILWDAHTGT-------VKQQFEFHSAPALDVDWQSN--DEFATSSTDGCIHVCKVGEDR 350 (524)
T ss_pred EEEEEcCCCCEEEeccCCccEEEEeccCce-------EEEeeeeccCCccceEEecC--ceEeecCCCceEEEEEecCCC
Confidence 368899999999999999999999985432 34455667777567888654 358999999999999998776
Q ss_pred eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCC---------
Q 024451 81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN--------- 151 (267)
Q Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~--------- 151 (267)
+...+ .+|...|..+.|+|. +.+|++++.|++++||.... ......+++|...|..+.|+|.|.
T Consensus 351 P~~t~-----~GH~g~V~alk~n~t-g~LLaS~SdD~TlkiWs~~~-~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~ 423 (524)
T KOG0273|consen 351 PVKTF-----IGHHGEVNALKWNPT-GSLLASCSDDGTLKIWSMGQ-SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNL 423 (524)
T ss_pred cceee-----ecccCceEEEEECCC-CceEEEecCCCeeEeeecCC-CcchhhhhhhccceeeEeecCCCCccCCCcCCc
Confidence 66665 369999999999964 67899999999999999764 345777889999999999999764
Q ss_pred EEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCcc
Q 024451 152 RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHE 231 (267)
Q Consensus 152 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 231 (267)
.+++++.|++|++||...+.++..+.. +..+|.+++|+|+++++|+|+.||.|++|+.++++..... ...
T Consensus 424 ~l~sas~dstV~lwdv~~gv~i~~f~k-----H~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~-----~~~ 493 (524)
T KOG0273|consen 424 MLASASFDSTVKLWDVESGVPIHTLMK-----HQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSY-----QGT 493 (524)
T ss_pred eEEEeecCCeEEEEEccCCceeEeecc-----CCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEee-----cCC
Confidence 589999999999999999998877644 3347999999999999999999999999999998887654 245
Q ss_pred ceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451 232 GRITCLGLSADGSALCTGSWDTNLKIWAFG 261 (267)
Q Consensus 232 ~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~ 261 (267)
+.|..++|+.+|.+|..+-.|+.+.+-++.
T Consensus 494 ~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 494 GGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred CeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 679999999999999998899999998763
No 49
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4.2e-30 Score=190.52 Aligned_cols=238 Identities=21% Similarity=0.336 Sum_probs=188.3
Q ss_pred ceeeCCC-CCeEEEccCCCeEEEeecCCCCCCCCCCcccccc-cCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCC
Q 024451 2 TCAFSPT-GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRML-SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG 79 (267)
Q Consensus 2 ~~~~~~~-g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~ 79 (267)
.++|+|. |..|+|+|.|+.|++|+...+.. ..+...+ .+|+..|.+++|+|.+ ++|++||.|.++.||.-..+
T Consensus 19 ~~awhp~~g~ilAscg~Dk~vriw~~~~~~s----~~ck~vld~~hkrsVRsvAwsp~g-~~La~aSFD~t~~Iw~k~~~ 93 (312)
T KOG0645|consen 19 SVAWHPGKGVILASCGTDKAVRIWSTSSGDS----WTCKTVLDDGHKRSVRSVAWSPHG-RYLASASFDATVVIWKKEDG 93 (312)
T ss_pred EEEeccCCceEEEeecCCceEEEEecCCCCc----EEEEEeccccchheeeeeeecCCC-cEEEEeeccceEEEeecCCC
Confidence 3689998 89999999999999999874221 2233223 4899999999999976 69999999999999987655
Q ss_pred eeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCc--ccceEEeeccccceeEEEEecCCCEEEEee
Q 024451 80 LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA--SRAVRTFHGHEGDVNTVKFFPDGNRFGTGS 157 (267)
Q Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 157 (267)
.-..+- ...||+..|.+++|+. ++++|++++.|+.|-||.+... ......+++|...|..+.|||...+|++++
T Consensus 94 efecv~---~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~S 169 (312)
T KOG0645|consen 94 EFECVA---TLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCS 169 (312)
T ss_pred ceeEEe---eeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEec
Confidence 433221 2358999999999996 5789999999999999987622 245678899999999999999999999999
Q ss_pred CCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEE
Q 024451 158 DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCL 237 (267)
Q Consensus 158 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~ 237 (267)
-|.+|++|+-.....=...... .++...|.+++|++.|..|++++.|+.++||-... .+...|.+++..+
T Consensus 170 YDnTIk~~~~~~dddW~c~~tl--~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~--------~~~~~~sr~~Y~v 239 (312)
T KOG0645|consen 170 YDNTIKVYRDEDDDDWECVQTL--DGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYT--------DLSGMHSRALYDV 239 (312)
T ss_pred cCCeEEEEeecCCCCeeEEEEe--cCccceEEEEEecCCCceEEEecCCcceEeeeecc--------CcchhcccceEee
Confidence 9999999997633211111111 11223699999999999999999999999998542 2234588899999
Q ss_pred EECCCCCeEEEeECCCcEEEEec
Q 024451 238 GLSADGSALCTGSWDTNLKIWAF 260 (267)
Q Consensus 238 ~~~p~~~~l~sgs~dg~i~~w~~ 260 (267)
+|. ...||+++.|+.|+||.-
T Consensus 240 ~W~--~~~IaS~ggD~~i~lf~~ 260 (312)
T KOG0645|consen 240 PWD--NGVIASGGGDDAIRLFKE 260 (312)
T ss_pred eec--ccceEeccCCCEEEEEEe
Confidence 998 458999999999999964
No 50
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-31 Score=225.11 Aligned_cols=246 Identities=18% Similarity=0.281 Sum_probs=203.6
Q ss_pred eeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeE
Q 024451 3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT 82 (267)
Q Consensus 3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 82 (267)
++|+|.-.+++++--.|.|.+||+.-.. +...+.+|.++|..+.|+|+. .+++||+.|..|++|+..+....
T Consensus 15 lsFHP~rPwILtslHsG~IQlWDYRM~t-------li~rFdeHdGpVRgv~FH~~q-plFVSGGDDykIkVWnYk~rrcl 86 (1202)
T KOG0292|consen 15 LSFHPKRPWILTSLHSGVIQLWDYRMGT-------LIDRFDEHDGPVRGVDFHPTQ-PLFVSGGDDYKIKVWNYKTRRCL 86 (1202)
T ss_pred eecCCCCCEEEEeecCceeeeehhhhhh-------HHhhhhccCCccceeeecCCC-CeEEecCCccEEEEEecccceeh
Confidence 6899999999999999999999986432 667789999999999999975 58999999999999999877665
Q ss_pred EEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcE
Q 024451 83 SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTC 162 (267)
Q Consensus 83 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i 162 (267)
.++ .||-+.|.++.|++. -..+++++.|.+|+||+.. .++.+..+.||+--|.|..|+|....++++|-|.+|
T Consensus 87 ftL-----~GHlDYVRt~~FHhe-yPWIlSASDDQTIrIWNwq-sr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTV 159 (1202)
T KOG0292|consen 87 FTL-----LGHLDYVRTVFFHHE-YPWILSASDDQTIRIWNWQ-SRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTV 159 (1202)
T ss_pred hhh-----ccccceeEEeeccCC-CceEEEccCCCeEEEEecc-CCceEEEEecCceEEEeeccCCccceEEEecccceE
Confidence 544 589999999999864 5689999999999999986 466889999999999999999999999999999999
Q ss_pred EEEeCCCCeee------------------------EEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccc
Q 024451 163 RLFDIRTGHQL------------------------QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK 218 (267)
Q Consensus 163 ~iwd~~~~~~~------------------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~ 218 (267)
|+||+..-+.. ....+...+++...|..++|+|.-..+++|+.|+.|++|.+...+
T Consensus 160 RVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetK 239 (1202)
T KOG0292|consen 160 RVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK 239 (1202)
T ss_pred EEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecccc
Confidence 99998642110 001112223455678899999999999999999999999875433
Q ss_pred eeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCceEe
Q 024451 219 VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGYRR 265 (267)
Q Consensus 219 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~~~ 265 (267)
. ..... -.+|...|.++-|+|..++++|.|.|++|++||+..+..
T Consensus 240 a-WEvDt-crgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~ 284 (1202)
T KOG0292|consen 240 A-WEVDT-CRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTS 284 (1202)
T ss_pred c-eeehh-hhcccCCcceEEecCccceeEecCCCccEEEEecccccc
Confidence 2 22211 247999999999999999999999999999999876543
No 51
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.5e-31 Score=205.25 Aligned_cols=207 Identities=27% Similarity=0.486 Sum_probs=180.8
Q ss_pred CcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecC
Q 024451 36 LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC 115 (267)
Q Consensus 36 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~ 115 (267)
.++.+.+.+|.+-|.|+++.|. .+++++|+.|++++|||+.+++....+ .||...+..+++++.+ .++.+++.
T Consensus 141 wKl~rVi~gHlgWVr~vavdP~-n~wf~tgs~DrtikIwDlatg~Lkltl-----tGhi~~vr~vavS~rH-pYlFs~ge 213 (460)
T KOG0285|consen 141 WKLYRVISGHLGWVRSVAVDPG-NEWFATGSADRTIKIWDLATGQLKLTL-----TGHIETVRGVAVSKRH-PYLFSAGE 213 (460)
T ss_pred ceehhhhhhccceEEEEeeCCC-ceeEEecCCCceeEEEEcccCeEEEee-----cchhheeeeeeecccC-ceEEEecC
Confidence 4567889999999999999996 579999999999999999999877665 4789999999998654 47789999
Q ss_pred CCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEcc
Q 024451 116 DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI 195 (267)
Q Consensus 116 d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 195 (267)
|+.|+-||++. .+.++.+.+|-..|.|++.+|.-..+++|+.|.++|+||+++...+..+. ++..+|.++.+.|
T Consensus 214 dk~VKCwDLe~-nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~-----GH~~~V~~V~~~~ 287 (460)
T KOG0285|consen 214 DKQVKCWDLEY-NKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLS-----GHTNPVASVMCQP 287 (460)
T ss_pred CCeeEEEechh-hhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEec-----CCCCcceeEEeec
Confidence 99999999974 67899999999999999999999999999999999999999877665543 2345789999999
Q ss_pred CCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451 196 SGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF 260 (267)
Q Consensus 196 ~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~ 260 (267)
....+++|+.|+.|++||+..++..... ..|...|.+++.+|....+|++|.| .|+-|++
T Consensus 288 ~dpqvit~S~D~tvrlWDl~agkt~~tl----t~hkksvral~lhP~e~~fASas~d-nik~w~~ 347 (460)
T KOG0285|consen 288 TDPQVITGSHDSTVRLWDLRAGKTMITL----THHKKSVRALCLHPKENLFASASPD-NIKQWKL 347 (460)
T ss_pred CCCceEEecCCceEEEeeeccCceeEee----ecccceeeEEecCCchhhhhccCCc-cceeccC
Confidence 9999999999999999999888765443 4688999999999999999999986 6788875
No 52
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8.8e-31 Score=217.56 Aligned_cols=243 Identities=22% Similarity=0.414 Sum_probs=199.5
Q ss_pred CceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCC--
Q 024451 1 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT-- 78 (267)
Q Consensus 1 ~~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~-- 78 (267)
++++|-|.++++++|...|.+.+||+.... +..+.++|.+.|++++..|++. .+++||.|++|++||..-
T Consensus 416 l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~-------l~Eti~AHdgaIWsi~~~pD~~-g~vT~saDktVkfWdf~l~~ 487 (888)
T KOG0306|consen 416 LASKFVPGDRYIVLGTKNGELQVFDLASAS-------LVETIRAHDGAIWSISLSPDNK-GFVTGSADKTVKFWDFKLVV 487 (888)
T ss_pred EEEEecCCCceEEEeccCCceEEEEeehhh-------hhhhhhccccceeeeeecCCCC-ceEEecCCcEEEEEeEEEEe
Confidence 367788999999999999999999987633 4556779999999999999874 689999999999998742
Q ss_pred ---CeeEEEe--CCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEE
Q 024451 79 ---GLRTSVF--GGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRF 153 (267)
Q Consensus 79 ---~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 153 (267)
+.+...+ ....+..-.+.+.++.++| ++++++.+--|.+++||-+.+ -+..-.+-||.-+|.|+..+|+++.+
T Consensus 488 ~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflDt-lKFflsLYGHkLPV~smDIS~DSkli 565 (888)
T KOG0306|consen 488 SVPGTQKKVLSLKHTRTLELEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLDT-LKFFLSLYGHKLPVLSMDISPDSKLI 565 (888)
T ss_pred ccCcccceeeeeccceEEeccccEEEEEEcC-CCcEEEEEeccCeEEEEEecc-eeeeeeecccccceeEEeccCCcCeE
Confidence 1111111 1111112356789999996 678999999999999998764 34455677999999999999999999
Q ss_pred EEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccce
Q 024451 154 GTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGR 233 (267)
Q Consensus 154 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 233 (267)
+|||.|+.|++|-++-|.+...++.+ ...|+++.|-|....+++++.|+.++-||....+.++.+ ..|...
T Consensus 566 vTgSADKnVKiWGLdFGDCHKS~fAH-----dDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L----~~H~~e 636 (888)
T KOG0306|consen 566 VTGSADKNVKIWGLDFGDCHKSFFAH-----DDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKL----DGHHSE 636 (888)
T ss_pred EeccCCCceEEeccccchhhhhhhcc-----cCceeEEEEcccceeEEEecCcceEEeechhhhhhheee----ccchhe
Confidence 99999999999999988876655442 245999999999999999999999999998887777655 578899
Q ss_pred EEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451 234 ITCLGLSADGSALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 234 v~~~~~~p~~~~l~sgs~dg~i~~w~~~~ 262 (267)
|+|++.+|+|.+++++|+|.+|++|..+.
T Consensus 637 v~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 637 VWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred eeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 99999999999999999999999997554
No 53
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=2.2e-30 Score=218.72 Aligned_cols=237 Identities=21% Similarity=0.366 Sum_probs=196.5
Q ss_pred eeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeE
Q 024451 3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT 82 (267)
Q Consensus 3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 82 (267)
++|+|++.++++||.|-+|++|++... .+..++.||-+.|..+.|++. -.+++|+|.|.+|||||.+++..+
T Consensus 57 v~FH~~qplFVSGGDDykIkVWnYk~r-------rclftL~GHlDYVRt~~FHhe-yPWIlSASDDQTIrIWNwqsr~~i 128 (1202)
T KOG0292|consen 57 VDFHPTQPLFVSGGDDYKIKVWNYKTR-------RCLFTLLGHLDYVRTVFFHHE-YPWILSASDDQTIRIWNWQSRKCI 128 (1202)
T ss_pred eeecCCCCeEEecCCccEEEEEecccc-------eehhhhccccceeEEeeccCC-CceEEEccCCCeEEEEeccCCceE
Confidence 689999999999999999999998753 377889999999999999985 579999999999999999999888
Q ss_pred EEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCccc----------------------------ceEEe
Q 024451 83 SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR----------------------------AVRTF 134 (267)
Q Consensus 83 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~----------------------------~~~~~ 134 (267)
.++ .||...|-|..|+|.. .++++++-|.+|||||+..-++ ....+
T Consensus 129 avl-----tGHnHYVMcAqFhptE-DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VL 202 (1202)
T KOG0292|consen 129 AVL-----TGHNHYVMCAQFHPTE-DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVL 202 (1202)
T ss_pred EEE-----ecCceEEEeeccCCcc-ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeee
Confidence 876 4799999999999754 5789999999999999741100 12346
Q ss_pred eccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeC
Q 024451 135 HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT 214 (267)
Q Consensus 135 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~ 214 (267)
.||...|+-++|+|.-..+++|+.|+.|++|.....+- +....-.++...|+++-|+|..+.+++.++|+.|++||+
T Consensus 203 EGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa---WEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm 279 (1202)
T KOG0292|consen 203 EGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA---WEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDM 279 (1202)
T ss_pred cccccccceEEecCCcceEEecCCcceeeEEEeccccc---eeehhhhcccCCcceEEecCccceeEecCCCccEEEEec
Confidence 78999999999999999999999999999999864331 111111234557999999999999999999999999999
Q ss_pred CccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451 215 LLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG 261 (267)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~ 261 (267)
...+.+..+. ..+++-+.++-+|..+++|. ++|+-+.+|.+.
T Consensus 280 ~kRt~v~tfr----rendRFW~laahP~lNLfAA-gHDsGm~VFkle 321 (1202)
T KOG0292|consen 280 TKRTSVQTFR----RENDRFWILAAHPELNLFAA-GHDSGMIVFKLE 321 (1202)
T ss_pred ccccceeeee----ccCCeEEEEEecCCcceeee-ecCCceEEEEEc
Confidence 8888776653 23567899999999999985 578888888765
No 54
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.98 E-value=2e-30 Score=215.01 Aligned_cols=237 Identities=23% Similarity=0.366 Sum_probs=194.7
Q ss_pred eCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEE
Q 024451 5 FSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSV 84 (267)
Q Consensus 5 ~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~ 84 (267)
+.|+.++|+.++..+.+|+|++.... -..+.||+..|.++....++ -+|+|||.|+++++|.++.......
T Consensus 332 lG~e~~~laVATNs~~lr~y~~~~~~--------c~ii~GH~e~vlSL~~~~~g-~llat~sKD~svilWr~~~~~~~~~ 402 (775)
T KOG0319|consen 332 LGPEESHLAVATNSPELRLYTLPTSY--------CQIIPGHTEAVLSLDVWSSG-DLLATGSKDKSVILWRLNNNCSKSL 402 (775)
T ss_pred cCCccceEEEEeCCCceEEEecCCCc--------eEEEeCchhheeeeeecccC-cEEEEecCCceEEEEEecCCcchhh
Confidence 46899999999999999999876532 23789999999999944444 5899999999999998854332221
Q ss_pred eCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCccc---c-e----EEeeccccceeEEEEecCCCEEEEe
Q 024451 85 FGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR---A-V----RTFHGHEGDVNTVKFFPDGNRFGTG 156 (267)
Q Consensus 85 ~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~---~-~----~~~~~~~~~i~~~~~~~~~~~l~~~ 156 (267)
. .....+|...|.+++.+.....+|++++.|+++++|++..... + . .....|...|++++++|+.+.+|||
T Consensus 403 ~-~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~ 481 (775)
T KOG0319|consen 403 C-VAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATG 481 (775)
T ss_pred h-hhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEec
Confidence 1 1233689999999999877778999999999999999875111 1 1 1234799999999999999999999
Q ss_pred eCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEE
Q 024451 157 SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITC 236 (267)
Q Consensus 157 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~ 236 (267)
|.|++.+||++........+ .++...+.++.|+|..+.+++++.|..|+||.+.+...+..+ .+|...|..
T Consensus 482 SqDktaKiW~le~~~l~~vL-----sGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~----eGH~~aVlr 552 (775)
T KOG0319|consen 482 SQDKTAKIWDLEQLRLLGVL-----SGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTF----EGHTSAVLR 552 (775)
T ss_pred ccccceeeecccCceEEEEe-----eCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeee----cCccceeEe
Confidence 99999999999965544443 234457999999999999999999999999999888777666 579999999
Q ss_pred EEECCCCCeEEEeECCCcEEEEec
Q 024451 237 LGLSADGSALCTGSWDTNLKIWAF 260 (267)
Q Consensus 237 ~~~~p~~~~l~sgs~dg~i~~w~~ 260 (267)
+.|-.+|+.|+||+.||.++||++
T Consensus 553 a~F~~~~~qliS~~adGliKlWni 576 (775)
T KOG0319|consen 553 ASFIRNGKQLISAGADGLIKLWNI 576 (775)
T ss_pred eeeeeCCcEEEeccCCCcEEEEec
Confidence 999999999999999999999986
No 55
>PTZ00421 coronin; Provisional
Probab=99.98 E-value=1.6e-29 Score=213.07 Aligned_cols=228 Identities=15% Similarity=0.183 Sum_probs=172.5
Q ss_pred ceeeCC-CCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451 2 TCAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL 80 (267)
Q Consensus 2 ~~~~~~-~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 80 (267)
+++|+| ++++|++++.|++|++||+...............+.+|...|.+++|+|....+|++++.|++|+|||++++.
T Consensus 80 ~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~ 159 (493)
T PTZ00421 80 DVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGK 159 (493)
T ss_pred EEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCe
Confidence 678999 8899999999999999998653211111224556889999999999999866789999999999999999887
Q ss_pred eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccc-eeEEEEecCCCEEEEee--
Q 024451 81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGD-VNTVKFFPDGNRFGTGS-- 157 (267)
Q Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~-- 157 (267)
....+ .+|...|.+++|++ ++.++++++.|+.|++||++.. ..+..+.+|.+. ...+.|.+++..+++++
T Consensus 160 ~~~~l-----~~h~~~V~sla~sp-dG~lLatgs~Dg~IrIwD~rsg-~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s 232 (493)
T PTZ00421 160 AVEVI-----KCHSDQITSLEWNL-DGSLLCTTSKDKKLNIIDPRDG-TIVSSVEAHASAKSQRCLWAKRKDLIITLGCS 232 (493)
T ss_pred EEEEE-----cCCCCceEEEEEEC-CCCEEEEecCCCEEEEEECCCC-cEEEEEecCCCCcceEEEEcCCCCeEEEEecC
Confidence 65554 36888999999996 5678999999999999999864 456677788754 45678888877777654
Q ss_pred --CCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEE-eCCeEEEEeCCccceeeecccccCCccceE
Q 024451 158 --DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLLAKVVLNLGSLQNSHEGRI 234 (267)
Q Consensus 158 --~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v 234 (267)
.|+.|++||+++........... ....+....|+++++++++|+ .||.|++||+..++..... ...+..++
T Consensus 233 ~s~Dr~VklWDlr~~~~p~~~~~~d---~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~---~~~s~~~~ 306 (493)
T PTZ00421 233 KSQQRQIMLWDTRKMASPYSTVDLD---QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCS---SYSSVEPH 306 (493)
T ss_pred CCCCCeEEEEeCCCCCCceeEeccC---CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEe---eccCCCCC
Confidence 47999999998754332221111 122455667899999998887 4999999999877655432 12345567
Q ss_pred EEEEECCC
Q 024451 235 TCLGLSAD 242 (267)
Q Consensus 235 ~~~~~~p~ 242 (267)
..++|.|.
T Consensus 307 ~g~~~~pk 314 (493)
T PTZ00421 307 KGLCMMPK 314 (493)
T ss_pred cceEeccc
Confidence 78888874
No 56
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.98 E-value=1.2e-30 Score=205.58 Aligned_cols=251 Identities=23% Similarity=0.314 Sum_probs=197.4
Q ss_pred CCC-CeEEEccCCCeEEEeecCCCCCCCC---CCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeE
Q 024451 7 PTG-QSVACGGLDSVCSIFNLNSPTDKDG---NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT 82 (267)
Q Consensus 7 ~~g-~~l~~~~~d~~v~~w~~~~~~~~~~---~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 82 (267)
|+. .++++++..+.+.|||+........ .......+.||...-+.+.|++.....|++++.|++|.+||+......
T Consensus 134 PQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~ 213 (422)
T KOG0264|consen 134 PQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKE 213 (422)
T ss_pred CCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccC
Confidence 444 6788889999999999976432211 233445788999988999999988889999999999999999754321
Q ss_pred --EEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCC-cccceEEeeccccceeEEEEec-CCCEEEEeeC
Q 024451 83 --SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV-ASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSD 158 (267)
Q Consensus 83 --~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~ 158 (267)
..-+.....+|+..|..++|++.+..+|++++.|+.+.|||+|. ..++.....+|.++++|++|+| ++..||+||.
T Consensus 214 ~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~ 293 (422)
T KOG0264|consen 214 DKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSA 293 (422)
T ss_pred CccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccC
Confidence 11112234689999999999999999999999999999999996 4556677789999999999999 5678899999
Q ss_pred CCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCC-EEEEEEeCCeEEEEeCCcccee----------eeccccc
Q 024451 159 DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAKVV----------LNLGSLQ 227 (267)
Q Consensus 159 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~g~~dg~i~i~d~~~~~~~----------~~~~~~~ 227 (267)
|++|.+||+|+-+.....+ ..+...|..+.|||... .|++++.|+.+.+||+..-... ..+...+
T Consensus 294 D~tV~LwDlRnL~~~lh~~----e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~H 369 (422)
T KOG0264|consen 294 DKTVALWDLRNLNKPLHTF----EGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIH 369 (422)
T ss_pred CCcEEEeechhcccCceec----cCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEe
Confidence 9999999999866533222 34456799999999865 6788889999999997542211 1222355
Q ss_pred CCccceEEEEEECCCCCe-EEEeECCCcEEEEecC
Q 024451 228 NSHEGRITCLGLSADGSA-LCTGSWDTNLKIWAFG 261 (267)
Q Consensus 228 ~~~~~~v~~~~~~p~~~~-l~sgs~dg~i~~w~~~ 261 (267)
.+|...|....|+|+... ++|.+.|+.+.||.+.
T Consensus 370 gGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 370 GGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred cCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 789999999999998775 6789999999999875
No 57
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=2.8e-29 Score=201.17 Aligned_cols=244 Identities=22% Similarity=0.388 Sum_probs=194.5
Q ss_pred eeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCC---CeEEEEeCCCC
Q 024451 3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD---QTCVLWDITTG 79 (267)
Q Consensus 3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d---~~v~iwd~~~~ 79 (267)
..|+|.|-++++|...|+|||||....+ -.+...++.-.++|..++|.+++.+.++.|-.. |.+.+||.-+.
T Consensus 65 AkySPsG~yiASGD~sG~vRIWdtt~~~-----hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~S 139 (603)
T KOG0318|consen 65 AKYSPSGFYIASGDVSGKVRIWDTTQKE-----HILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNS 139 (603)
T ss_pred EEeCCCceEEeecCCcCcEEEEeccCcc-----eeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCc
Confidence 4699999999999999999999976421 113334556678999999999877655555322 45778876542
Q ss_pred eeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCC
Q 024451 80 LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD 159 (267)
Q Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 159 (267)
...+ .+|...++++.+-|.-...++|++.|+.|.+|+=. +.+....+..|..-|+++.|+|||+.|++.+.|
T Consensus 140 --vGei-----~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGP-PFKFk~s~r~HskFV~~VRysPDG~~Fat~gsD 211 (603)
T KOG0318|consen 140 --VGEI-----TGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGP-PFKFKSSFREHSKFVNCVRYSPDGSRFATAGSD 211 (603)
T ss_pred --ccee-----eccceeEeeeeccCCCceEEEeccCCCeEEEeeCC-CeeeeecccccccceeeEEECCCCCeEEEecCC
Confidence 3322 48999999999998777789999999999999743 334455677899999999999999999999999
Q ss_pred CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecc---------------
Q 024451 160 GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLG--------------- 224 (267)
Q Consensus 160 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~--------------- 224 (267)
|++.+||-.+++.+..+-. ...+.+.|.+++|+||+..+++.+.|..++|||..+.+.+..+.
T Consensus 212 gki~iyDGktge~vg~l~~--~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq 289 (603)
T KOG0318|consen 212 GKIYIYDGKTGEKVGELED--SDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ 289 (603)
T ss_pred ccEEEEcCCCccEEEEecC--CCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe
Confidence 9999999999887665532 34566789999999999999999999999999986654332110
Q ss_pred ------------------------cccCCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451 225 ------------------------SLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG 261 (267)
Q Consensus 225 ------------------------~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~ 261 (267)
....+|...|+++..+|++++|.+||.||.|.-|+.+
T Consensus 290 kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~ 350 (603)
T KOG0318|consen 290 KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSG 350 (603)
T ss_pred CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecC
Confidence 1123589999999999999999999999999999864
No 58
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=9.4e-30 Score=187.79 Aligned_cols=236 Identities=22% Similarity=0.343 Sum_probs=181.9
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
+++|+.+|..|++++.|+++++|++.... .......++|.+.|-.+.|.|.....+++++.|++|++||+.++++
T Consensus 25 Sv~wn~~g~~lasgs~dktv~v~n~e~~r-----~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~ 99 (313)
T KOG1407|consen 25 SVAWNCDGTKLASGSFDKTVSVWNLERDR-----FRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKC 99 (313)
T ss_pred EEEEcccCceeeecccCCceEEEEecchh-----hhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcE
Confidence 47899999999999999999999987531 1223356799999999999988778899999999999999998877
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCC-----------------------------------
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV----------------------------------- 126 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~----------------------------------- 126 (267)
....... ..-..+.|+|+ +.+++.++.|..|.+.|.+.
T Consensus 100 ~~~i~~~------~eni~i~wsp~-g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ 172 (313)
T KOG1407|consen 100 TARIETK------GENINITWSPD-GEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVE 172 (313)
T ss_pred EEEeecc------CcceEEEEcCC-CCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEE
Confidence 6654311 11123344433 33445555555555554431
Q ss_pred -----cccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEE
Q 024451 127 -----ASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLF 201 (267)
Q Consensus 127 -----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 201 (267)
.-+++..+++|...+.|+.|+|+|++||+|+.|-.+.+||++..-+...+... .-+|..++||.+|++||
T Consensus 173 ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRl-----dwpVRTlSFS~dg~~lA 247 (313)
T KOG1407|consen 173 ILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRL-----DWPVRTLSFSHDGRMLA 247 (313)
T ss_pred EEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccc-----cCceEEEEeccCcceee
Confidence 12356678899999999999999999999999999999999865555544321 23699999999999999
Q ss_pred EEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECC---------CcEEEEe
Q 024451 202 AGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD---------TNLKIWA 259 (267)
Q Consensus 202 ~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d---------g~i~~w~ 259 (267)
+|++|..|-|=+++++..+..+ .++++..+++|+|...+||-+..| |++++|-
T Consensus 248 SaSEDh~IDIA~vetGd~~~eI-----~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG 309 (313)
T KOG1407|consen 248 SASEDHFIDIAEVETGDRVWEI-----PCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFG 309 (313)
T ss_pred ccCccceEEeEecccCCeEEEe-----eccCCceeEEecCCCceeeEEecCCCCccccccceeEEec
Confidence 9999999999999998887665 578899999999999999876654 5677774
No 59
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=1.7e-30 Score=202.59 Aligned_cols=236 Identities=24% Similarity=0.411 Sum_probs=186.0
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
++.|.+++++++.++.|+.+++|++... ....++.||++.|+++.|..... .+++|+.|.+|++||+....+
T Consensus 224 ~~d~d~~~~~~iAas~d~~~r~Wnvd~~-------r~~~TLsGHtdkVt~ak~~~~~~-~vVsgs~DRtiK~WDl~k~~C 295 (459)
T KOG0288|consen 224 SIDFDSDNKHVIAASNDKNLRLWNVDSL-------RLRHTLSGHTDKVTAAKFKLSHS-RVVSGSADRTIKLWDLQKAYC 295 (459)
T ss_pred eeeecCCCceEEeecCCCceeeeeccch-------hhhhhhcccccceeeehhhcccc-ceeeccccchhhhhhhhhhhe
Confidence 4678999999999999999999998753 26678999999999999987654 499999999999999987655
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT 161 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 161 (267)
....- -...++.+... ...+++|-.|++||+||.+... .......+ +.|+++..++++..+.+++.|.+
T Consensus 296 ~kt~l------~~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs~~-~~~sv~~g-g~vtSl~ls~~g~~lLsssRDdt 364 (459)
T KOG0288|consen 296 SKTVL------PGSQCNDIVCS---ISDVISGHFDKKVRFWDIRSAD-KTRSVPLG-GRVTSLDLSMDGLELLSSSRDDT 364 (459)
T ss_pred ecccc------ccccccceEec---ceeeeecccccceEEEeccCCc-eeeEeecC-cceeeEeeccCCeEEeeecCCCc
Confidence 44321 11233444443 3467899999999999988543 45555544 58999999999999999999999
Q ss_pred EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECC
Q 024451 162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA 241 (267)
Q Consensus 162 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p 241 (267)
+++.|+++.+....+... ...-....+.+.|||++.|+++|+.||.|+||++.+++....... ......|++++|+|
T Consensus 365 l~viDlRt~eI~~~~sA~-g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~--s~s~~aI~s~~W~~ 441 (459)
T KOG0288|consen 365 LKVIDLRTKEIRQTFSAE-GFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSL--STSNAAITSLSWNP 441 (459)
T ss_pred eeeeecccccEEEEeecc-ccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEecc--CCCCcceEEEEEcC
Confidence 999999986655544322 111123478899999999999999999999999998887765432 11223799999999
Q ss_pred CCCeEEEeECCCcEEEEe
Q 024451 242 DGSALCTGSWDTNLKIWA 259 (267)
Q Consensus 242 ~~~~l~sgs~dg~i~~w~ 259 (267)
.|.+|++++.++.+.+|.
T Consensus 442 sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 442 SGSGLLSADKQKAVTLWT 459 (459)
T ss_pred CCchhhcccCCcceEecC
Confidence 999999999999999993
No 60
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.9e-31 Score=219.60 Aligned_cols=236 Identities=19% Similarity=0.274 Sum_probs=193.7
Q ss_pred CCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeC
Q 024451 7 PTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFG 86 (267)
Q Consensus 7 ~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~ 86 (267)
-+.++|+|++..|.|.+||+..+ ...+....+..|+..++++.|++....+|+|||.||+|++||++.......+.
T Consensus 98 ~~~NlIAT~s~nG~i~vWdlnk~----~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~ 173 (839)
T KOG0269|consen 98 LYSNLIATCSTNGVISVWDLNKS----IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFR 173 (839)
T ss_pred chhhhheeecCCCcEEEEecCcc----ccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccccc
Confidence 35688999999999999999763 22345667899999999999999888899999999999999998776555543
Q ss_pred CccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEe
Q 024451 87 GEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFD 166 (267)
Q Consensus 87 ~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd 166 (267)
+..+.|..|.|+|..+..|+++...|.+++||+++..+...++.+|+++|.|+.|+|++.+||+||.|++|+|||
T Consensus 174 -----~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd 248 (839)
T KOG0269|consen 174 -----SNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWD 248 (839)
T ss_pred -----ccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEe
Confidence 456789999999999999999999999999999988888888999999999999999999999999999999999
Q ss_pred CCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEE---eCCeEEEEeCCccceeeecccccCCccceEEEEEECC-C
Q 024451 167 IRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY---SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA-D 242 (267)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~ 242 (267)
..+.+...... .+...++.+++|-|..++.++.+ .|-.|++||++....+..+. ..|...++.++|.. |
T Consensus 249 ~t~~~~~~~~t----InTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~---~eH~~~vt~i~W~~~d 321 (839)
T KOG0269|consen 249 MTDSRAKPKHT----INTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATF---LEHTDSVTGIAWDSGD 321 (839)
T ss_pred ccCCCccceeE----EeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceee---eccCccccceeccCCC
Confidence 97654322221 22345789999999987655443 36799999998776654332 46888999999964 5
Q ss_pred CCeEEEeECCCcEEEE
Q 024451 243 GSALCTGSWDTNLKIW 258 (267)
Q Consensus 243 ~~~l~sgs~dg~i~~w 258 (267)
-..|.++|.||++..-
T Consensus 322 ~~~l~s~sKD~tv~qh 337 (839)
T KOG0269|consen 322 RINLWSCSKDGTVLQH 337 (839)
T ss_pred ceeeEeecCccHHHHh
Confidence 5678899999987543
No 61
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=4.2e-31 Score=202.35 Aligned_cols=233 Identities=25% Similarity=0.393 Sum_probs=185.2
Q ss_pred eeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeE
Q 024451 3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT 82 (267)
Q Consensus 3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 82 (267)
+++.-+.+.|++|+.|.+|++||+.... +..++-+|...|..+.|+. .+++++|.|.++.+||+.+...+
T Consensus 241 LCLqyd~rviisGSSDsTvrvWDv~tge-------~l~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~i 310 (499)
T KOG0281|consen 241 LCLQYDERVIVSGSSDSTVRVWDVNTGE-------PLNTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDI 310 (499)
T ss_pred EeeeccceEEEecCCCceEEEEeccCCc-------hhhHHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHH
Confidence 3445567799999999999999997632 5667789999999999965 48999999999999999876422
Q ss_pred EEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcE
Q 024451 83 SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTC 162 (267)
Q Consensus 83 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i 162 (267)
.. .....||...++.+.|+ .+++++++.|.+|++|++.+ ...++.+.+|...|-|+.+ .++++++|+.|.+|
T Consensus 311 t~--rrVLvGHrAaVNvVdfd---~kyIVsASgDRTikvW~~st-~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntI 382 (499)
T KOG0281|consen 311 TL--RRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWSTST-CEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTI 382 (499)
T ss_pred HH--HHHHhhhhhheeeeccc---cceEEEecCCceEEEEeccc-eeeehhhhcccccceehhc--cCeEEEecCCCceE
Confidence 11 12346899999999986 35899999999999999864 5578889999999999887 47899999999999
Q ss_pred EEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecc-----cccCCccceEEEE
Q 024451 163 RLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLG-----SLQNSHEGRITCL 237 (267)
Q Consensus 163 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~-----~~~~~~~~~v~~~ 237 (267)
++||+..|.++..+..+ ..-|.++.|+ ...+++|..||.|++||+.....+.... .....|.+.|..+
T Consensus 383 Rlwdi~~G~cLRvLeGH-----EeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrL 455 (499)
T KOG0281|consen 383 RLWDIECGACLRVLEGH-----EELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRL 455 (499)
T ss_pred EEEeccccHHHHHHhch-----HHhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEE
Confidence 99999999887655332 2347888884 5689999999999999986543221110 0113588999999
Q ss_pred EECCCCCeEEEeECCCcEEEEecCc
Q 024451 238 GLSADGSALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 238 ~~~p~~~~l~sgs~dg~i~~w~~~~ 262 (267)
.|. ...++++++|.+|.||+|..
T Consensus 456 QFD--~fqIvsssHddtILiWdFl~ 478 (499)
T KOG0281|consen 456 QFD--EFQIISSSHDDTILIWDFLN 478 (499)
T ss_pred eec--ceEEEeccCCCeEEEEEcCC
Confidence 985 57789999999999999854
No 62
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=7.9e-30 Score=187.56 Aligned_cols=242 Identities=25% Similarity=0.393 Sum_probs=183.1
Q ss_pred CceeeCC--CCCeEEEcc-------CCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeE
Q 024451 1 MTCAFSP--TGQSVACGG-------LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTC 71 (267)
Q Consensus 1 ~~~~~~~--~g~~l~~~~-------~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v 71 (267)
+++.|+| +++ |+.+. -.|.+.|-++..+. + ...... ..-.+.++.|+|++..+..+++++.||++
T Consensus 12 ysvqfSPf~~nr-LavAt~q~yGl~G~G~L~ile~~~~~---g-i~e~~s-~d~~D~LfdV~Wse~~e~~~~~a~GDGSL 85 (311)
T KOG0277|consen 12 YSVQFSPFVENR-LAVATAQHYGLAGNGRLFILEVTDPK---G-IQECQS-YDTEDGLFDVAWSENHENQVIAASGDGSL 85 (311)
T ss_pred ceeEecccccch-hheeehhhcccccCceEEEEecCCCC---C-eEEEEe-eecccceeEeeecCCCcceEEEEecCceE
Confidence 3567887 333 33322 26777787775211 1 111111 13457799999999888899999999999
Q ss_pred EEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEec-CC
Q 024451 72 VLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DG 150 (267)
Q Consensus 72 ~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~-~~ 150 (267)
+|||...... +....+-|...|.++.+++...+.+++++.|++||+|+...+ ..+..+.+|+..|....|+| ..
T Consensus 86 rl~d~~~~s~----Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~-~Sv~Tf~gh~~~Iy~a~~sp~~~ 160 (311)
T KOG0277|consen 86 RLFDLTMPSK----PIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP-NSVQTFNGHNSCIYQAAFSPHIP 160 (311)
T ss_pred EEeccCCCCc----chhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC-cceEeecCCccEEEEEecCCCCC
Confidence 9999653321 112224589999999999988889999999999999998753 46778999999999999999 58
Q ss_pred CEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEcc-CCCEEEEEEeCCeEEEEeCCccceeeecccccCC
Q 024451 151 NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI-SGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNS 229 (267)
Q Consensus 151 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~ 229 (267)
+.|++++.|+++++||++.......+. .|. ..+.++.|+. +...+++|+.|+.|+.||++..+.+.. .+ .+
T Consensus 161 nlfas~Sgd~~l~lwdvr~~gk~~~i~-ah~----~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~--eL-~g 232 (311)
T KOG0277|consen 161 NLFASASGDGTLRLWDVRSPGKFMSIE-AHN----SEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLF--EL-NG 232 (311)
T ss_pred CeEEEccCCceEEEEEecCCCceeEEE-ecc----ceeEeecccccCCcEEEecCCCceEEEEehhhccccce--ee-cC
Confidence 899999999999999998764443332 222 3588888986 456789999999999999887654422 12 57
Q ss_pred ccceEEEEEECCC-CCeEEEeECCCcEEEEecC
Q 024451 230 HEGRITCLGLSAD-GSALCTGSWDTNLKIWAFG 261 (267)
Q Consensus 230 ~~~~v~~~~~~p~-~~~l~sgs~dg~i~~w~~~ 261 (267)
|+-.|..++|||. ...||++|.|-+++||++.
T Consensus 233 h~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~ 265 (311)
T KOG0277|consen 233 HGLAVRKVKFSPHHASLLASASYDMTVRIWDPE 265 (311)
T ss_pred CceEEEEEecCcchhhHhhhccccceEEecccc
Confidence 9999999999996 5689999999999999875
No 63
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.7e-30 Score=187.74 Aligned_cols=242 Identities=19% Similarity=0.288 Sum_probs=187.0
Q ss_pred CCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEe-cCCCeeEEEeeCCCeEEEEeCCCCeeEEEeC
Q 024451 8 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYV-PDEDTHLITSSGDQTCVLWDITTGLRTSVFG 86 (267)
Q Consensus 8 ~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~ 86 (267)
-|+.|+|++.|++|+|+.+.... +..++..+.||.++|..++|. |.-+.+|++++.||.|.||.-+++.-....
T Consensus 22 ygkrlATcsSD~tVkIf~v~~n~----~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~- 96 (299)
T KOG1332|consen 22 YGKRLATCSSDGTVKIFEVRNNG----QSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAY- 96 (299)
T ss_pred hcceeeeecCCccEEEEEEcCCC----CceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhh-
Confidence 47899999999999999987533 234677899999999999995 555679999999999999998877322221
Q ss_pred CccccCCccceEEEEEeCC-CCeEEEEecCCCeEEEEeCCCcc--cceEEeeccccceeEEEEecC---C----------
Q 024451 87 GEFQSGHTADVLSVSISGS-NSRMFVSGSCDSTARLWDTRVAS--RAVRTFHGHEGDVNTVKFFPD---G---------- 150 (267)
Q Consensus 87 ~~~~~~~~~~i~~~~~~~~-~~~~~~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~i~~~~~~~~---~---------- 150 (267)
....|+..+++++|.|. .+-+|+.++.||.|.|.+.+... ...+....|.-.|+++.|.|. |
T Consensus 97 --e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~ 174 (299)
T KOG1332|consen 97 --EHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAK 174 (299)
T ss_pred --hhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccc
Confidence 22469999999999864 35578889999999999876541 123456789999999999986 4
Q ss_pred -CEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCC----CEEEEEEeCCeEEEEeCCccceeeeccc
Q 024451 151 -NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG----RLLFAGYSNGDCYVWDTLLAKVVLNLGS 225 (267)
Q Consensus 151 -~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~----~~l~~g~~dg~i~i~d~~~~~~~~~~~~ 225 (267)
+.|++|+.|..|+||+..+++-.. ......+...|..++|.|.- .+|++++.||.+.||.........+ ..
T Consensus 175 ~krlvSgGcDn~VkiW~~~~~~w~~---e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk-~t 250 (299)
T KOG1332|consen 175 VKRLVSGGCDNLVKIWKFDSDSWKL---ERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWK-KT 250 (299)
T ss_pred cceeeccCCccceeeeecCCcchhh---hhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCccc-cc
Confidence 469999999999999998753211 11123455689999999974 4899999999999998652211111 11
Q ss_pred ccCCccceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451 226 LQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF 260 (267)
Q Consensus 226 ~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~ 260 (267)
+.......+..+.||+.|++|+.++.|..+++|.-
T Consensus 251 ll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 251 LLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE 285 (299)
T ss_pred ccccCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence 22346678999999999999999999999999964
No 64
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.9e-29 Score=206.60 Aligned_cols=235 Identities=25% Similarity=0.428 Sum_probs=196.2
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccC-CeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSG-HKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL 80 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 80 (267)
++.|+++|++|+.|..+|.|.|||..... ..+.+.+ |...|.+++|.. ..+.+|+.|+.|..+|++...
T Consensus 222 Sv~ws~~G~~LavG~~~g~v~iwD~~~~k-------~~~~~~~~h~~rvg~laW~~---~~lssGsr~~~I~~~dvR~~~ 291 (484)
T KOG0305|consen 222 SVKWSPDGSHLAVGTSDGTVQIWDVKEQK-------KTRTLRGSHASRVGSLAWNS---SVLSSGSRDGKILNHDVRISQ 291 (484)
T ss_pred EEEECCCCCEEEEeecCCeEEEEehhhcc-------ccccccCCcCceeEEEeccC---ceEEEecCCCcEEEEEEecch
Confidence 56799999999999999999999987532 4556667 999999999973 468899999999999998764
Q ss_pred eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEec-CCCEEEEee--
Q 024451 81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGS-- 157 (267)
Q Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~-- 157 (267)
.... ...+|...|.-+.|++ +++++++|+.|+.+.|||.. ...+...+..|...|..++|+| ....||+|+
T Consensus 292 ~~~~----~~~~H~qeVCgLkws~-d~~~lASGgnDN~~~Iwd~~-~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs 365 (484)
T KOG0305|consen 292 HVVS----TLQGHRQEVCGLKWSP-DGNQLASGGNDNVVFIWDGL-SPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGS 365 (484)
T ss_pred hhhh----hhhcccceeeeeEECC-CCCeeccCCCccceEeccCC-CccccEEEeccceeeeEeeeCCCccCceEEcCCC
Confidence 3322 2467999999999996 56789999999999999985 3456777889999999999999 567888875
Q ss_pred CCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEE--EEeCCeEEEEeCCccceeeecccccCCccceEE
Q 024451 158 DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFA--GYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRIT 235 (267)
Q Consensus 158 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~--g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~ 235 (267)
.|++|++||+.++..+.... ....|.++.|++..+-|++ |..++.|.||+..+.+.+..+ .+|..+|.
T Consensus 366 ~D~~i~fwn~~~g~~i~~vd------tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l----~gH~~RVl 435 (484)
T KOG0305|consen 366 ADRCIKFWNTNTGARIDSVD------TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAEL----LGHTSRVL 435 (484)
T ss_pred cccEEEEEEcCCCcEecccc------cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeee----cCCcceeE
Confidence 79999999999988765432 2246999999999865555 567889999998876665554 57999999
Q ss_pred EEEECCCCCeEEEeECCCcEEEEecCc
Q 024451 236 CLGLSADGSALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 236 ~~~~~p~~~~l~sgs~dg~i~~w~~~~ 262 (267)
.++++|||..+++|+.|.++++|.+.+
T Consensus 436 ~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 436 YLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred EEEECCCCCEEEEecccCcEEeccccC
Confidence 999999999999999999999998765
No 65
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=6.7e-30 Score=219.93 Aligned_cols=257 Identities=23% Similarity=0.363 Sum_probs=197.0
Q ss_pred ceeeCCCCCeEEEcc--CCCeEEEeecCCCC----CCCC-CCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEE
Q 024451 2 TCAFSPTGQSVACGG--LDSVCSIFNLNSPT----DKDG-NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLW 74 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~--~d~~v~~w~~~~~~----~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iw 74 (267)
++..+|+|..++||| .|+.+++|+.+.-. +... .-+....+..|.+.|.|++|+|++ .+||+||.|+.|.||
T Consensus 18 SIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG-~~lAsGSDD~~v~iW 96 (942)
T KOG0973|consen 18 SIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDG-SYLASGSDDRLVMIW 96 (942)
T ss_pred EEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCC-CeEeeccCcceEEEe
Confidence 577899999999999 99999999976421 0111 123455678899999999999976 699999999999999
Q ss_pred eCCCCeeEEEeC-------------CccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccce
Q 024451 75 DITTGLRTSVFG-------------GEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDV 141 (267)
Q Consensus 75 d~~~~~~~~~~~-------------~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i 141 (267)
+.........+. .....+|..+|..++|+| ++.++++++.|++|.+|+.+.. ..++.+.+|.+.|
T Consensus 97 ~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~tF-~~~~vl~~H~s~V 174 (942)
T KOG0973|consen 97 ERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNAKTF-ELLKVLRGHQSLV 174 (942)
T ss_pred eecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEccccc-eeeeeeecccccc
Confidence 987310000110 011257999999999997 6789999999999999998865 6788999999999
Q ss_pred eEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecC-CCCCCcEEEEEEccCCCEEEEEEe----CCeEEEEeCCc
Q 024451 142 NTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG-ENEIPHVTSIAFSISGRLLFAGYS----NGDCYVWDTLL 216 (267)
Q Consensus 142 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~g~~----dg~i~i~d~~~ 216 (267)
-.+.|.|-|+|||+-+.|++|+||++.+-.....+.+... .........+.|||||.+|++..+ ...+.|.+..+
T Consensus 175 KGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~t 254 (942)
T KOG0973|consen 175 KGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGT 254 (942)
T ss_pred cceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCC
Confidence 9999999999999999999999999776444443333222 122345789999999999999743 23677777655
Q ss_pred cceeeecccccCCccceEEEEEECCC-----CC------------eEEEeECCCcEEEEecCceEec
Q 024451 217 AKVVLNLGSLQNSHEGRITCLGLSAD-----GS------------ALCTGSWDTNLKIWAFGGYRRV 266 (267)
Q Consensus 217 ~~~~~~~~~~~~~~~~~v~~~~~~p~-----~~------------~l~sgs~dg~i~~w~~~~~~~~ 266 (267)
.+.-..+ .+|.++++++.|+|- .+ .+|+||.|++|.||.. ++.|+
T Consensus 255 Wk~~~~L----vGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T-~~~RP 316 (942)
T KOG0973|consen 255 WKVDKDL----VGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNT-ALPRP 316 (942)
T ss_pred ceeeeee----ecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEec-CCCCc
Confidence 5544333 579999999999982 12 6899999999999985 55554
No 66
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.6e-28 Score=183.94 Aligned_cols=241 Identities=22% Similarity=0.316 Sum_probs=187.4
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeC--CCeEEEEeCCCC
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG--DQTCVLWDITTG 79 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~--d~~v~iwd~~~~ 79 (267)
++.|+++|.+|++++.|.++++||..... ..+++..++..+..+.|...... ++.++. |.+||.-++.+.
T Consensus 19 sl~fs~~G~~litss~dDsl~LYd~~~g~-------~~~ti~skkyG~~~~~Fth~~~~-~i~sStk~d~tIryLsl~dN 90 (311)
T KOG1446|consen 19 SLDFSDDGLLLITSSEDDSLRLYDSLSGK-------QVKTINSKKYGVDLACFTHHSNT-VIHSSTKEDDTIRYLSLHDN 90 (311)
T ss_pred EEEecCCCCEEEEecCCCeEEEEEcCCCc-------eeeEeecccccccEEEEecCCce-EEEccCCCCCceEEEEeecC
Confidence 57899999999999999999999987632 45667777778888888765443 455554 899999999988
Q ss_pred eeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCC
Q 024451 80 LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD 159 (267)
Q Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 159 (267)
+.+..| .||...|++++.+|.+ ..+++++.|++|++||++... ....+. ...-..++|.|.|-++|++...
T Consensus 91 kylRYF-----~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~-cqg~l~--~~~~pi~AfDp~GLifA~~~~~ 161 (311)
T KOG1446|consen 91 KYLRYF-----PGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKK-CQGLLN--LSGRPIAAFDPEGLIFALANGS 161 (311)
T ss_pred ceEEEc-----CCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCC-CceEEe--cCCCcceeECCCCcEEEEecCC
Confidence 877777 4899999999999876 578999999999999998533 333332 2334568999999999999988
Q ss_pred CcEEEEeCCCCe--eeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEE
Q 024451 160 GTCRLFDIRTGH--QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCL 237 (267)
Q Consensus 160 ~~i~iwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~ 237 (267)
+.|++||++.-. ....+.- ..+.......+.|||+|++|+.+...+.+++.|...+.....+...+....-+ ...
T Consensus 162 ~~IkLyD~Rs~dkgPF~tf~i--~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~-~~a 238 (311)
T KOG1446|consen 162 ELIKLYDLRSFDKGPFTTFSI--TDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLP-LSA 238 (311)
T ss_pred CeEEEEEecccCCCCceeEcc--CCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcc-eeE
Confidence 899999998642 1222211 12334568999999999999999999999999998887665554433333333 567
Q ss_pred EECCCCCeEEEeECCCcEEEEecCc
Q 024451 238 GLSADGSALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 238 ~~~p~~~~l~sgs~dg~i~~w~~~~ 262 (267)
+|+||++++++|+.||+|.+|.+..
T Consensus 239 ~ftPds~Fvl~gs~dg~i~vw~~~t 263 (311)
T KOG1446|consen 239 TFTPDSKFVLSGSDDGTIHVWNLET 263 (311)
T ss_pred EECCCCcEEEEecCCCcEEEEEcCC
Confidence 8999999999999999999998743
No 67
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=2.4e-29 Score=201.30 Aligned_cols=257 Identities=22% Similarity=0.273 Sum_probs=189.0
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccc-cCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRML-SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL 80 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 80 (267)
++++.|.|-.+++||.|.+|+.||+..-+ ..++..+.+ ...+..|.+++|++.+++ |+..+.....+++|-.--.
T Consensus 172 al~~Dp~GaR~~sGs~Dy~v~~wDf~gMd---as~~~fr~l~P~E~h~i~sl~ys~Tg~~-iLvvsg~aqakl~DRdG~~ 247 (641)
T KOG0772|consen 172 ALAVDPSGARFVSGSLDYTVKFWDFQGMD---ASMRSFRQLQPCETHQINSLQYSVTGDQ-ILVVSGSAQAKLLDRDGFE 247 (641)
T ss_pred EeeecCCCceeeeccccceEEEEeccccc---ccchhhhccCcccccccceeeecCCCCe-EEEEecCcceeEEccCCce
Confidence 57889999999999999999999987522 222233333 334567899999998875 4555566678889876433
Q ss_pred eEEEeCC-------ccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEee-----ccccceeEEEEec
Q 024451 81 RTSVFGG-------EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH-----GHEGDVNTVKFFP 148 (267)
Q Consensus 81 ~~~~~~~-------~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~-----~~~~~i~~~~~~~ 148 (267)
......+ ..+.||...+++.+|+|.+...|+|++.||++|+||+....+....++ +..-++.+++|+|
T Consensus 248 ~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nr 327 (641)
T KOG0772|consen 248 IVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNR 327 (641)
T ss_pred eeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCC
Confidence 2222222 235689999999999999999999999999999999976544333332 3344678999999
Q ss_pred CCCEEEEeeCCCcEEEEeCCCCeeeE--EEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeec-cc
Q 024451 149 DGNRFGTGSDDGTCRLFDIRTGHQLQ--VYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL-GS 225 (267)
Q Consensus 149 ~~~~l~~~~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~-~~ 225 (267)
+++.+|+|+.||.|.+|+..+..... .+...|. ....|++++||++|++|++-+.|+.+++||++..+..... ..
T Consensus 328 dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~--~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tg 405 (641)
T KOG0772|consen 328 DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHL--PGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTG 405 (641)
T ss_pred CcchhhhcccCCceeeeecCCcccccceEeeeccC--CCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcC
Confidence 99999999999999999975533222 2223332 2347999999999999999999999999999876654332 22
Q ss_pred ccCCccceEEEEEECCCCCeEEEeEC------CCcEEEEecCceEec
Q 024451 226 LQNSHEGRITCLGLSADGSALCTGSW------DTNLKIWAFGGYRRV 266 (267)
Q Consensus 226 ~~~~~~~~v~~~~~~p~~~~l~sgs~------dg~i~~w~~~~~~~~ 266 (267)
++.. .+-+.++|||+.+++++|+. .|.+.+|+-..|.++
T Consensus 406 L~t~--~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v 450 (641)
T KOG0772|consen 406 LPTP--FPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTV 450 (641)
T ss_pred CCcc--CCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeE
Confidence 2222 24477899999999999875 567888887666543
No 68
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.1e-27 Score=173.93 Aligned_cols=254 Identities=22% Similarity=0.352 Sum_probs=190.7
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCC------CCCCCCc--ccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEE
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPT------DKDGNLP--VSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVL 73 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~------~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~i 73 (267)
+.+|+|.|.+.+.|+..+++++-.+..-. +...+-| +....+-|++.|+|++|+|.+ +++++|+.|++|++
T Consensus 37 av~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~g-eliatgsndk~ik~ 115 (350)
T KOG0641|consen 37 AVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCG-ELIATGSNDKTIKV 115 (350)
T ss_pred eEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCcc-CeEEecCCCceEEE
Confidence 46899999999999999999987654211 0011111 223456799999999999976 58999999999998
Q ss_pred EeCCCCeeEEEeCCccccCCccceEEEEEeC---CCCeEEEEec-CCCeEEEEeCCCcccceEEeeccccceeEEEEecC
Q 024451 74 WDITTGLRTSVFGGEFQSGHTADVLSVSISG---SNSRMFVSGS-CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD 149 (267)
Q Consensus 74 wd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~ 149 (267)
...+......+-..-..+-|.+.|..++|.. ..+.++++++ .|..|.+-|... ......+.+|.+-|.++- +-+
T Consensus 116 l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~-g~~~~a~sghtghilaly-swn 193 (350)
T KOG0641|consen 116 LPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGR-GQGFHALSGHTGHILALY-SWN 193 (350)
T ss_pred EecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCC-CCcceeecCCcccEEEEE-Eec
Confidence 8665432211110011245889999999863 3456677655 466677777654 345677889998887653 446
Q ss_pred CCEEEEeeCCCcEEEEeCCCCeeeEEEEeec--CCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeeccccc
Q 024451 150 GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQH--GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ 227 (267)
Q Consensus 150 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~ 227 (267)
+-.|++|++|.+||+||++-..++..+-... ...+...|.+++..|.|+.|++|-.|....+||++.++++..+
T Consensus 194 ~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f---- 269 (350)
T KOG0641|consen 194 GAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRF---- 269 (350)
T ss_pred CcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeee----
Confidence 8899999999999999999776655432211 1223457899999999999999999999999999999988766
Q ss_pred CCccceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451 228 NSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 228 ~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~ 262 (267)
..|...|.|+.|+|...||++||.|..|++=|+-|
T Consensus 270 ~phsadir~vrfsp~a~yllt~syd~~ikltdlqg 304 (350)
T KOG0641|consen 270 HPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG 304 (350)
T ss_pred CCCccceeEEEeCCCceEEEEecccceEEEeeccc
Confidence 46999999999999999999999999999998754
No 69
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=1.5e-28 Score=189.95 Aligned_cols=236 Identities=22% Similarity=0.329 Sum_probs=180.8
Q ss_pred CeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee-----EE-
Q 024451 10 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR-----TS- 83 (267)
Q Consensus 10 ~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~-----~~- 83 (267)
..++++|.|.++++|..+.+... ......-+||+..|-+|+..+++ ..+++||.|.+|+||+.++... ..
T Consensus 160 ~~fvsas~Dqtl~Lw~~~~~~~~---~~~~~~~~GHk~~V~sVsv~~sg-tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~ 235 (423)
T KOG0313|consen 160 CLFVSASMDQTLRLWKWNVGENK---VKALKVCRGHKRSVDSVSVDSSG-TRFCSGSWDTMLKIWSVETDEEDELESSSN 235 (423)
T ss_pred ceEEEecCCceEEEEEecCchhh---hhHHhHhcccccceeEEEecCCC-CeEEeecccceeeecccCCCccccccccch
Confidence 46999999999999998764422 22333335999999999999876 4789999999999999432110 00
Q ss_pred ----------E----eCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecC
Q 024451 84 ----------V----FGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD 149 (267)
Q Consensus 84 ----------~----~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~ 149 (267)
. .+.....+|...|.++.|++ ...+.+++.|-+|+.||+..+. ....+.+ +..+++++++|.
T Consensus 236 ~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~-~~~~~~~-~ksl~~i~~~~~ 311 (423)
T KOG0313|consen 236 RRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGG-LKSTLTT-NKSLNCISYSPL 311 (423)
T ss_pred hhhhhhhhhhcccccCceEEecccccceeeEEEcC--CCceEeecccceEEEEEeeccc-ceeeeec-CcceeEeecccc
Confidence 0 00112358999999999986 3467899999999999998654 3333432 467899999999
Q ss_pred CCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCC-EEEEEEeCCeEEEEeCCccc-eeeeccccc
Q 024451 150 GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAK-VVLNLGSLQ 227 (267)
Q Consensus 150 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~g~~dg~i~i~d~~~~~-~~~~~~~~~ 227 (267)
.+++++|+.|..+++||.+++.-..... ...++...|.++.|+|... .|++|+.|+.+++||++..+ .+..+
T Consensus 312 ~~Ll~~gssdr~irl~DPR~~~gs~v~~--s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI---- 385 (423)
T KOG0313|consen 312 SKLLASGSSDRHIRLWDPRTGDGSVVSQ--SLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDI---- 385 (423)
T ss_pred cceeeecCCCCceeecCCCCCCCceeEE--eeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceee----
Confidence 9999999999999999999875332221 1234455899999999876 46778999999999998877 33333
Q ss_pred CCccceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451 228 NSHEGRITCLGLSADGSALCTGSWDTNLKIWAF 260 (267)
Q Consensus 228 ~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~ 260 (267)
..|.+.|.++.|+ ++.++++|+.|..|+|+..
T Consensus 386 ~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 386 AGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred ccCCceEEEEecc-CCceEEeccCcceEEEecc
Confidence 4699999999998 5789999999999999964
No 70
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=8.6e-29 Score=198.11 Aligned_cols=250 Identities=18% Similarity=0.288 Sum_probs=190.9
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCC-----CCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeC
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDK-----DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI 76 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~-----~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~ 76 (267)
++.|++.|.+|++.+-..+.+++|.....-. +.-..-+...+||...++|..|+|...+.+++++.|+++||||+
T Consensus 219 sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv 298 (641)
T KOG0772|consen 219 SLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDV 298 (641)
T ss_pred eeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEec
Confidence 4689999999999999999999997653210 00011123457999999999999999889999999999999999
Q ss_pred CCC-eeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcc--cceEEeecccc--ceeEEEEecCCC
Q 024451 77 TTG-LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS--RAVRTFHGHEG--DVNTVKFFPDGN 151 (267)
Q Consensus 77 ~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~--~i~~~~~~~~~~ 151 (267)
+.. .+..++......+..-.+.++.|++ ++..+++|+.||.|.+|+..... .....-++|.. .|+|+.|+++|+
T Consensus 299 ~~~k~q~qVik~k~~~g~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~ 377 (641)
T KOG0772|consen 299 NNTKSQLQVIKTKPAGGKRVPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGN 377 (641)
T ss_pred CCchhheeEEeeccCCCcccCceeeecCC-CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccc
Confidence 753 3344444344445666788888986 56679999999999999965322 12334457876 899999999999
Q ss_pred EEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEe------CCeEEEEeCCccceeeeccc
Q 024451 152 RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS------NGDCYVWDTLLAKVVLNLGS 225 (267)
Q Consensus 152 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~------dg~i~i~d~~~~~~~~~~~~ 225 (267)
+|++-+.|+++++||++.-+.....+. +.....+-+.++|||+.++|++|.+ .|.+.+||..+...+..+..
T Consensus 378 ~LlSRg~D~tLKvWDLrq~kkpL~~~t--gL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i 455 (641)
T KOG0772|consen 378 YLLSRGFDDTLKVWDLRQFKKPLNVRT--GLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDI 455 (641)
T ss_pred hhhhccCCCceeeeeccccccchhhhc--CCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecC
Confidence 999999999999999997654332221 1122234578899999999999864 57899999888777766532
Q ss_pred ccCCccceEEEEEECCCCCeEEEeECCCcEEEE
Q 024451 226 LQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 258 (267)
Q Consensus 226 ~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w 258 (267)
-...|..+.|+|-=+.+..|+.||++++|
T Consensus 456 ----~~aSvv~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 456 ----STASVVRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred ----CCceEEEEeecchhhheeeecCCCceEEE
Confidence 25568889999988888889999999998
No 71
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=2.6e-27 Score=201.05 Aligned_cols=228 Identities=17% Similarity=0.250 Sum_probs=165.2
Q ss_pred ceeeCCC-CCeEEEccCCCeEEEeecCCCCCC-CCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCC
Q 024451 2 TCAFSPT-GQSVACGGLDSVCSIFNLNSPTDK-DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG 79 (267)
Q Consensus 2 ~~~~~~~-g~~l~~~~~d~~v~~w~~~~~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~ 79 (267)
+++|+|+ +.+|++|+.|++|++||+...... .........+.+|...|.+++|+|++..++++++.|++|++||+.++
T Consensus 79 ~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg 158 (568)
T PTZ00420 79 DLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENE 158 (568)
T ss_pred EEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCC
Confidence 6889997 799999999999999998643211 00011234578999999999999987666789999999999999988
Q ss_pred eeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeE-----EEEecCCCEEE
Q 024451 80 LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNT-----VKFFPDGNRFG 154 (267)
Q Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~-----~~~~~~~~~l~ 154 (267)
.....+ .|...|.+++|++ ++.++++++.|+.|+|||++.. ..+..+.+|.+.+.+ ..|++++++++
T Consensus 159 ~~~~~i------~~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rsg-~~i~tl~gH~g~~~s~~v~~~~fs~d~~~Il 230 (568)
T PTZ00420 159 KRAFQI------NMPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRKQ-EIASSFHIHDGGKNTKNIWIDGLGGDDNYIL 230 (568)
T ss_pred cEEEEE------ecCCcEEEEEECC-CCCEEEEEecCCEEEEEECCCC-cEEEEEecccCCceeEEEEeeeEcCCCCEEE
Confidence 655443 1446799999996 4668888999999999999864 456778889876543 33458889999
Q ss_pred EeeCCC----cEEEEeCCCC-eeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCC
Q 024451 155 TGSDDG----TCRLFDIRTG-HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNS 229 (267)
Q Consensus 155 ~~~~d~----~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~ 229 (267)
+++.|+ +|+|||++.. +.+... .. ......+......+++.++++|..|+.|++|++.... +..+.. ..
T Consensus 231 TtG~d~~~~R~VkLWDlr~~~~pl~~~-~l--d~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~--~~ 304 (568)
T PTZ00420 231 STGFSKNNMREMKLWDLKNTTSALVTM-SI--DNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNE--YK 304 (568)
T ss_pred EEEcCCCCccEEEEEECCCCCCceEEE-Ee--cCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeecc--cc
Confidence 988764 7999999853 333222 11 1112233344445668899999999999999986653 222222 23
Q ss_pred ccceEEEEEECCCC
Q 024451 230 HEGRITCLGLSADG 243 (267)
Q Consensus 230 ~~~~v~~~~~~p~~ 243 (267)
+..++.+++|.|..
T Consensus 305 s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 305 SCSPFRSFGFLPKQ 318 (568)
T ss_pred cCCCccceEEcccc
Confidence 56788899999964
No 72
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=5e-28 Score=191.10 Aligned_cols=246 Identities=22% Similarity=0.343 Sum_probs=191.3
Q ss_pred CceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCC-----------CcccccccCCeeeEEEEEEecCCCeeEEEeeCCC
Q 024451 1 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGN-----------LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ 69 (267)
Q Consensus 1 ~~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~-----------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~ 69 (267)
++++++|++++..+++.|++|.-|++......... .|....-++|...+.+++.++++ .+|++|+.|.
T Consensus 146 ~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg-kylatgg~d~ 224 (479)
T KOG0299|consen 146 TSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG-KYLATGGRDR 224 (479)
T ss_pred eEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC-cEEEecCCCc
Confidence 36789999999999999999999997653211011 11111114899999999999975 6999999999
Q ss_pred eEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecC
Q 024451 70 TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD 149 (267)
Q Consensus 70 ~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~ 149 (267)
.|.||+.++...+..+ .+|.+.|.+++|-... ..+.+++.|+.+++|++... ..+..+.+|.+.|..+....-
T Consensus 225 ~v~Iw~~~t~ehv~~~-----~ghr~~V~~L~fr~gt-~~lys~s~Drsvkvw~~~~~-s~vetlyGHqd~v~~IdaL~r 297 (479)
T KOG0299|consen 225 HVQIWDCDTLEHVKVF-----KGHRGAVSSLAFRKGT-SELYSASADRSVKVWSIDQL-SYVETLYGHQDGVLGIDALSR 297 (479)
T ss_pred eEEEecCcccchhhcc-----cccccceeeeeeecCc-cceeeeecCCceEEEehhHh-HHHHHHhCCccceeeechhcc
Confidence 9999999998776664 4799999999998544 45679999999999998753 346677899999999998877
Q ss_pred CCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeeccccc--
Q 024451 150 GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ-- 227 (267)
Q Consensus 150 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~-- 227 (267)
++.+.+|+.|+++++|++.... +.++..+ ...+-+++|- +...+++|+.+|.|.+|++...+++......+
T Consensus 298 eR~vtVGgrDrT~rlwKi~ees--qlifrg~----~~sidcv~~I-n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv 370 (479)
T KOG0299|consen 298 ERCVTVGGRDRTVRLWKIPEES--QLIFRGG----EGSIDCVAFI-NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGV 370 (479)
T ss_pred cceEEeccccceeEEEeccccc--eeeeeCC----CCCeeeEEEe-cccceeeccCCceEEEeeecccCceeEeeccccc
Confidence 8888888899999999995433 2333222 2357788875 55789999999999999988777665432211
Q ss_pred ------CCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451 228 ------NSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG 261 (267)
Q Consensus 228 ------~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~ 261 (267)
..+...|++++..|...++|+||.+|.||+|.+.
T Consensus 371 ~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~ 410 (479)
T KOG0299|consen 371 IPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIE 410 (479)
T ss_pred cCCccccccccceeeeEecccCceEEecCCCCceEEEEec
Confidence 1233489999999999999999999999999863
No 73
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.96 E-value=3.2e-28 Score=182.91 Aligned_cols=206 Identities=27% Similarity=0.474 Sum_probs=170.5
Q ss_pred cccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCe
Q 024451 39 SRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST 118 (267)
Q Consensus 39 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~ 118 (267)
...+.+|++.|+.+.|+|++ ..++||+.|..|.+|++........ ...+|++.|..+.+.. ++..+++++.|.+
T Consensus 40 ~m~l~gh~geI~~~~F~P~g-s~~aSgG~Dr~I~LWnv~gdceN~~----~lkgHsgAVM~l~~~~-d~s~i~S~gtDk~ 113 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDG-SCFASGGSDRAIVLWNVYGDCENFW----VLKGHSGAVMELHGMR-DGSHILSCGTDKT 113 (338)
T ss_pred hhhcCCCcceEEEEEECCCC-CeEeecCCcceEEEEecccccccee----eeccccceeEeeeecc-CCCEEEEecCCce
Confidence 44578999999999999954 6999999999999999754332211 1258999999999996 5667899999999
Q ss_pred EEEEeCCCcccceEEeeccccceeEEEEecCCC-EEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCC
Q 024451 119 ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN-RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG 197 (267)
Q Consensus 119 i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 197 (267)
++.||.+++ +.++.+++|..-++.+.-..-|. ++.+++.|+++++||+++...++.+ .....++++.|..++
T Consensus 114 v~~wD~~tG-~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~------~~kyqltAv~f~d~s 186 (338)
T KOG0265|consen 114 VRGWDAETG-KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF------ENKYQLTAVGFKDTS 186 (338)
T ss_pred EEEEecccc-eeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcc------ccceeEEEEEecccc
Confidence 999999864 56888899999999888544454 4567889999999999976554432 123468999999999
Q ss_pred CEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451 198 RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG 261 (267)
Q Consensus 198 ~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~ 261 (267)
..+.+|.-|+.|++||++.+.....+ .+|.++|+.+..+|+|.++.+-+.|.++++|++.
T Consensus 187 ~qv~sggIdn~ikvWd~r~~d~~~~l----sGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~r 246 (338)
T KOG0265|consen 187 DQVISGGIDNDIKVWDLRKNDGLYTL----SGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVR 246 (338)
T ss_pred cceeeccccCceeeeccccCcceEEe----ecccCceeeEEeccCCCccccccccceEEEEEec
Confidence 99999999999999999887766554 6899999999999999999999999999999973
No 74
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=2.9e-27 Score=178.00 Aligned_cols=246 Identities=18% Similarity=0.241 Sum_probs=181.5
Q ss_pred ceeeCC-CCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451 2 TCAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL 80 (267)
Q Consensus 2 ~~~~~~-~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 80 (267)
+++|+| ...+++.+++|++||+|+++... .. ..+....|.++|.++.|+.++ ..+++|+.|+.+++||+.+++
T Consensus 32 ~l~FSP~~~~~~~A~SWD~tVR~wevq~~g----~~-~~ka~~~~~~PvL~v~Wsddg-skVf~g~~Dk~~k~wDL~S~Q 105 (347)
T KOG0647|consen 32 ALAFSPQADNLLAAGSWDGTVRIWEVQNSG----QL-VPKAQQSHDGPVLDVCWSDDG-SKVFSGGCDKQAKLWDLASGQ 105 (347)
T ss_pred eeEeccccCceEEecccCCceEEEEEecCC----cc-cchhhhccCCCeEEEEEccCC-ceEEeeccCCceEEEEccCCC
Confidence 578999 56777799999999999997631 11 225567899999999999876 679999999999999999985
Q ss_pred eEEEeCCccccCCccceEEEEEeCCC-CeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCC
Q 024451 81 RTSVFGGEFQSGHTADVLSVSISGSN-SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD 159 (267)
Q Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 159 (267)
...+ ..|...|.++.|.+.. ...++||+.|++||+||.+... ++..+.- ...++++..- ...++.+..+
T Consensus 106 ~~~v------~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~-pv~t~~L-PeRvYa~Dv~--~pm~vVata~ 175 (347)
T KOG0647|consen 106 VSQV------AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN-PVATLQL-PERVYAADVL--YPMAVVATAE 175 (347)
T ss_pred eeee------eecccceeEEEEecCCCcceeEecccccceeecccCCCC-eeeeeec-cceeeehhcc--CceeEEEecC
Confidence 4433 3599999999888543 3578999999999999998543 4554442 3567776653 3478888999
Q ss_pred CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeec----ccccC---Cccc
Q 024451 160 GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL----GSLQN---SHEG 232 (267)
Q Consensus 160 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~----~~~~~---~~~~ 232 (267)
+.|.+|+++.+.... +.......-.+.+++..++....+.|+-+|.+.+..+..+....++ .+... ..--
T Consensus 176 r~i~vynL~n~~te~---k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VY 252 (347)
T KOG0647|consen 176 RHIAVYNLENPPTEF---KRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVY 252 (347)
T ss_pred CcEEEEEcCCCcchh---hhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceE
Confidence 999999997654321 1111112235788888888888899999999988876543211111 11000 0123
Q ss_pred eEEEEEECCCCCeEEEeECCCcEEEEecCceEec
Q 024451 233 RITCLGLSADGSALCTGSWDTNLKIWAFGGYRRV 266 (267)
Q Consensus 233 ~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~~~~ 266 (267)
.|++++|+|.-..|++++.||+..+||-..++||
T Consensus 253 aVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kL 286 (347)
T KOG0647|consen 253 AVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKL 286 (347)
T ss_pred EecceEeecccceEEEecCCceEEEecchhhhhh
Confidence 6889999999999999999999999998887776
No 75
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.3e-27 Score=174.22 Aligned_cols=203 Identities=26% Similarity=0.417 Sum_probs=168.2
Q ss_pred ccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCC
Q 024451 38 VSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS 117 (267)
Q Consensus 38 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~ 117 (267)
..+++..|.++|.+++|+-++ +|.++++.|++||+||...+..+.++. +|...|..++.+..+ ..|++++.|.
T Consensus 9 r~~~l~~~qgaV~avryN~dG-nY~ltcGsdrtvrLWNp~rg~liktYs-----ghG~EVlD~~~s~Dn-skf~s~GgDk 81 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDG-NYCLTCGSDRTVRLWNPLRGALIKTYS-----GHGHEVLDAALSSDN-SKFASCGGDK 81 (307)
T ss_pred hceeecccccceEEEEEccCC-CEEEEcCCCceEEeecccccceeeeec-----CCCceeeeccccccc-cccccCCCCc
Confidence 455778999999999999875 699999999999999999988888774 687888888877544 4689999999
Q ss_pred eEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCC
Q 024451 118 TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG 197 (267)
Q Consensus 118 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 197 (267)
.+.+||+.+ .+..+.+.+|.+.|+.+.|..+...+++|+.|.++++||.++........- ......|.++.. .+
T Consensus 82 ~v~vwDV~T-Gkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQil---dea~D~V~Si~v--~~ 155 (307)
T KOG0316|consen 82 AVQVWDVNT-GKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQIL---DEAKDGVSSIDV--AE 155 (307)
T ss_pred eEEEEEccc-CeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchh---hhhcCceeEEEe--cc
Confidence 999999985 567899999999999999999999999999999999999987643221110 111235777765 45
Q ss_pred CEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEe
Q 024451 198 RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWA 259 (267)
Q Consensus 198 ~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~ 259 (267)
.-|++|+.||.++.||++.+..... ....+|+|++|+|++++.+.++.|+++++-|
T Consensus 156 heIvaGS~DGtvRtydiR~G~l~sD------y~g~pit~vs~s~d~nc~La~~l~stlrLlD 211 (307)
T KOG0316|consen 156 HEIVAGSVDGTVRTYDIRKGTLSSD------YFGHPITSVSFSKDGNCSLASSLDSTLRLLD 211 (307)
T ss_pred cEEEeeccCCcEEEEEeecceeehh------hcCCcceeEEecCCCCEEEEeeccceeeecc
Confidence 6899999999999999987765432 3456899999999999999999999999986
No 76
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=3e-27 Score=199.94 Aligned_cols=224 Identities=29% Similarity=0.409 Sum_probs=185.5
Q ss_pred CCeEEEccCCCeEEEeecCCCCCCCCCCccccc-ccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCC
Q 024451 9 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRM-LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGG 87 (267)
Q Consensus 9 g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 87 (267)
+..+++++.|+++++|+.... ...+. +.||.+.|+++++.. ++.++++|+.|.++++||..++....++.
T Consensus 218 ~~~~~~~s~~~tl~~~~~~~~-------~~i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~sg~C~~~l~- 288 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLNNG-------YLILTRLVGHFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCSTGECTHSLQ- 288 (537)
T ss_pred cCeEEecCCCceeEEeecccc-------eEEEeeccCCCCCceeEEEec-CCCEEEEEecCCcEEeEecCCCcEEEEec-
Confidence 567999999999999997642 23444 899999999999965 56789999999999999999999988874
Q ss_pred ccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeC
Q 024451 88 EFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDI 167 (267)
Q Consensus 88 ~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~ 167 (267)
+|...+.++...+ ..+++|+.|.+|++|++.. ...+..+.+|.+.|.++..+ +.++++|+.|++|++||.
T Consensus 289 ----gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n-~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~ 358 (537)
T KOG0274|consen 289 ----GHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTN-GACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDP 358 (537)
T ss_pred ----CCCceEEEEEccC---ceEeeccCCceEEEEeccC-cceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEh
Confidence 7999998887753 4677889999999999974 45677777899999999987 789999999999999999
Q ss_pred CCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCcc-ceeeecccccCCccceEEEEEECCCCCeE
Q 024451 168 RTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA-KVVLNLGSLQNSHEGRITCLGLSADGSAL 246 (267)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~v~~~~~~p~~~~l 246 (267)
.+++++..+.. +...|.++.+.+. ..+++|+.|+.|++||+.+. +.+..+ ..|.+.+..+. ..+++|
T Consensus 359 ~~~~cl~sl~g-----H~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl----~~h~~~v~~l~--~~~~~L 426 (537)
T KOG0274|consen 359 RTGKCLKSLSG-----HTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTL----QGHTSLVSSLL--LRDNFL 426 (537)
T ss_pred hhceeeeeecC-----CcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhh----cCCcccccccc--ccccee
Confidence 99888766543 3457899887765 89999999999999999887 554433 46777775554 457899
Q ss_pred EEeECCCcEEEEecCce
Q 024451 247 CTGSWDTNLKIWAFGGY 263 (267)
Q Consensus 247 ~sgs~dg~i~~w~~~~~ 263 (267)
++++.|++|++||....
T Consensus 427 vs~~aD~~Ik~WD~~~~ 443 (537)
T KOG0274|consen 427 VSSSADGTIKLWDAEEG 443 (537)
T ss_pred EeccccccEEEeecccC
Confidence 99999999999987443
No 77
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=4.7e-27 Score=184.57 Aligned_cols=231 Identities=22% Similarity=0.385 Sum_probs=184.3
Q ss_pred CCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEe
Q 024451 6 SPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVF 85 (267)
Q Consensus 6 ~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 85 (267)
.|....++|||.|.++.++|...+. ...+++||+-.|..+.++|+.. .+++++.|..|++|.........
T Consensus 228 ~~s~~~ilTGG~d~~av~~d~~s~q-------~l~~~~Gh~kki~~v~~~~~~~-~v~~aSad~~i~vws~~~~s~~~-- 297 (506)
T KOG0289|consen 228 IPSSSKILTGGEDKTAVLFDKPSNQ-------ILATLKGHTKKITSVKFHKDLD-TVITASADEIIRVWSVPLSSEPT-- 297 (506)
T ss_pred cCCCCcceecCCCCceEEEecchhh-------hhhhccCcceEEEEEEeccchh-heeecCCcceEEeeccccccCcc--
Confidence 3445789999999999999976532 6778999999999999999764 68999999999999987554222
Q ss_pred CCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeec--cccceeEEEEecCCCEEEEeeCCCcEE
Q 024451 86 GGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG--HEGDVNTVKFFPDGNRFGTGSDDGTCR 163 (267)
Q Consensus 86 ~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d~~i~ 163 (267)
....|+..|..+..++ ++.+|++++.|+...+.|.+.... +..... ..-.+++++|||||..|++|..|+.++
T Consensus 298 ---~~~~h~~~V~~ls~h~-tgeYllsAs~d~~w~Fsd~~~g~~-lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vk 372 (506)
T KOG0289|consen 298 ---SSRPHEEPVTGLSLHP-TGEYLLSASNDGTWAFSDISSGSQ-LTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVK 372 (506)
T ss_pred ---ccccccccceeeeecc-CCcEEEEecCCceEEEEEccCCcE-EEEEeeccccceeEEeeEcCCceEEeccCCCceEE
Confidence 2246999999999886 567899999999999999886543 332322 223478999999999999999999999
Q ss_pred EEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCC
Q 024451 164 LFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADG 243 (267)
Q Consensus 164 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 243 (267)
|||++++.....|. .+.++|..++|+-+|-+|+++..|+.|++||++..+....+. -....++.++.|.+.|
T Consensus 373 iwdlks~~~~a~Fp-----ght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~---l~~~~~v~s~~fD~SG 444 (506)
T KOG0289|consen 373 IWDLKSQTNVAKFP-----GHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQ---LDEKKEVNSLSFDQSG 444 (506)
T ss_pred EEEcCCccccccCC-----CCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceee---ccccccceeEEEcCCC
Confidence 99999877554442 355689999999999999999999999999998776544332 2233479999999999
Q ss_pred CeEEEeECCCcEEEEe
Q 024451 244 SALCTGSWDTNLKIWA 259 (267)
Q Consensus 244 ~~l~sgs~dg~i~~w~ 259 (267)
.+|+.++.|=.|.+++
T Consensus 445 t~L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 445 TYLGIAGSDLQVYICK 460 (506)
T ss_pred CeEEeecceeEEEEEe
Confidence 9999997765555554
No 78
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=5.5e-27 Score=184.17 Aligned_cols=237 Identities=23% Similarity=0.371 Sum_probs=192.0
Q ss_pred eeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeE
Q 024451 3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT 82 (267)
Q Consensus 3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 82 (267)
..|+|+...+++++.|..+++|...... .......|..+|+.+..+|.+ .|+++++.|++..+.|++++...
T Consensus 267 v~~~~~~~~v~~aSad~~i~vws~~~~s-------~~~~~~~h~~~V~~ls~h~tg-eYllsAs~d~~w~Fsd~~~g~~l 338 (506)
T KOG0289|consen 267 VKFHKDLDTVITASADEIIRVWSVPLSS-------EPTSSRPHEEPVTGLSLHPTG-EYLLSASNDGTWAFSDISSGSQL 338 (506)
T ss_pred EEeccchhheeecCCcceEEeecccccc-------CccccccccccceeeeeccCC-cEEEEecCCceEEEEEccCCcEE
Confidence 4689999999999999999999987643 223456899999999999976 59999999999999999998766
Q ss_pred EEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcE
Q 024451 83 SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTC 162 (267)
Q Consensus 83 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i 162 (267)
...... ...-.+.+..|+| ++.+|.+|..|+.++|||++.+. ....+.+|.++|..+.|+.+|-+++++++|+.|
T Consensus 339 t~vs~~---~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~-~~a~Fpght~~vk~i~FsENGY~Lat~add~~V 413 (506)
T KOG0289|consen 339 TVVSDE---TSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQT-NVAKFPGHTGPVKAISFSENGYWLATAADDGSV 413 (506)
T ss_pred EEEeec---cccceeEEeeEcC-CceEEeccCCCceEEEEEcCCcc-ccccCCCCCCceeEEEeccCceEEEEEecCCeE
Confidence 544311 1233578888886 67899999999999999998654 677889999999999999999999999999999
Q ss_pred EEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCC--ccceeeecccccCCccceEEEEEEC
Q 024451 163 RLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL--LAKVVLNLGSLQNSHEGRITCLGLS 240 (267)
Q Consensus 163 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~~v~~~~~~ 240 (267)
++||+|..+....+... +...+.+++|++.|.+|+.++++=.|++++-. .......+ ..|.+..+++.|.
T Consensus 414 ~lwDLRKl~n~kt~~l~----~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~----~~~sg~st~v~Fg 485 (506)
T KOG0289|consen 414 KLWDLRKLKNFKTIQLD----EKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKEL----ADHSGLSTGVRFG 485 (506)
T ss_pred EEEEehhhcccceeecc----ccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehh----hhcccccceeeec
Confidence 99999976654443321 22368999999999999999888888887732 22222222 3577889999999
Q ss_pred CCCCeEEEeECCCcEEEEec
Q 024451 241 ADGSALCTGSWDTNLKIWAF 260 (267)
Q Consensus 241 p~~~~l~sgs~dg~i~~w~~ 260 (267)
.+.++|+++|.|..++++.+
T Consensus 486 ~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 486 EHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ccceEEeeccchhheEEeec
Confidence 99999999999999999875
No 79
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=2.7e-27 Score=200.21 Aligned_cols=229 Identities=27% Similarity=0.510 Sum_probs=187.1
Q ss_pred eeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeE
Q 024451 3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT 82 (267)
Q Consensus 3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 82 (267)
++|...+..|++|+.|.++++||.... .+..++.+|.+.|.++..-+ .++++|+.|.+|++|+++++..+
T Consensus 255 l~~~~~~~~lvsgS~D~t~rvWd~~sg-------~C~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~l 324 (537)
T KOG0274|consen 255 LAFPSGGDKLVSGSTDKTERVWDCSTG-------ECTHSLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGACL 324 (537)
T ss_pred EEEecCCCEEEEEecCCcEEeEecCCC-------cEEEEecCCCceEEEEEccC---ceEeeccCCceEEEEeccCcceE
Confidence 455556789999999999999997653 37889999999999998755 46888999999999999999887
Q ss_pred EEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcE
Q 024451 83 SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTC 162 (267)
Q Consensus 83 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i 162 (267)
.++. +|...|.++... ..++++|+.|+.|++|++. ..+.++.+.+|...|.++.+.+. +.+++|+.|++|
T Consensus 325 ~l~~-----~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~-~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~I 394 (537)
T KOG0274|consen 325 NLLR-----GHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPR-TGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTI 394 (537)
T ss_pred EEec-----cccccEEEEEec---CCEEEEEecCceEEEEEhh-hceeeeeecCCcceEEEEEecCc-ceEEeeeeccce
Confidence 7763 499999999986 4588999999999999998 45678999999999999988665 899999999999
Q ss_pred EEEeCCCC-eeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECC
Q 024451 163 RLFDIRTG-HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA 241 (267)
Q Consensus 163 ~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p 241 (267)
++||+++. +++..+.. + ..-+.. +...+++|++++.||.|++||...++.+..+.. .|.+.|.++++.
T Consensus 395 kvWdl~~~~~c~~tl~~-h----~~~v~~--l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~---~~~~~v~~l~~~- 463 (537)
T KOG0274|consen 395 KVWDLRTKRKCIHTLQG-H----TSLVSS--LLLRDNFLVSSSADGTIKLWDAEEGECLRTLEG---RHVGGVSALALG- 463 (537)
T ss_pred EeecCCchhhhhhhhcC-C----cccccc--cccccceeEeccccccEEEeecccCceeeeecc---CCcccEEEeecC-
Confidence 99999988 66554432 1 122333 345678999999999999999988887765532 266788888876
Q ss_pred CCCeEEEeECCCcEEEEecCce
Q 024451 242 DGSALCTGSWDTNLKIWAFGGY 263 (267)
Q Consensus 242 ~~~~l~sgs~dg~i~~w~~~~~ 263 (267)
...+++++.||++++|++...
T Consensus 464 -~~~il~s~~~~~~~l~dl~~~ 484 (537)
T KOG0274|consen 464 -KEEILCSSDDGSVKLWDLRSG 484 (537)
T ss_pred -cceEEEEecCCeeEEEecccC
Confidence 567888999999999997544
No 80
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=9.6e-28 Score=196.76 Aligned_cols=240 Identities=19% Similarity=0.316 Sum_probs=195.8
Q ss_pred CCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe--eEEE
Q 024451 7 PTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL--RTSV 84 (267)
Q Consensus 7 ~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~--~~~~ 84 (267)
|.+++|.|||.||+|++|+..... .....+....++.|.+-|..+.....+ +.|+|+|.|-+|++|+...+. ...+
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~-~~~s~~~~asme~HsDWVNDiiL~~~~-~tlIS~SsDtTVK~W~~~~~~~~c~st 112 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDS-NEPSTPYIASMEHHSDWVNDIILCGNG-KTLISASSDTTVKVWNAHKDNTFCMST 112 (735)
T ss_pred CCCceEEecCCCceEEEecccccc-CCcccchhhhhhhhHhHHhhHHhhcCC-CceEEecCCceEEEeecccCcchhHhh
Confidence 677889999999999999986532 222234566788899888877665544 479999999999999998663 2222
Q ss_pred eCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCccc---------ceEEee-ccccceeEEEEecCCCEEE
Q 024451 85 FGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR---------AVRTFH-GHEGDVNTVKFFPDGNRFG 154 (267)
Q Consensus 85 ~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~---------~~~~~~-~~~~~i~~~~~~~~~~~l~ 154 (267)
...|.+.|.++++-..+..++++||-|+.|.+||+..... ....+. ++...|++++..+.|..++
T Consensus 113 -----ir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~iv 187 (735)
T KOG0308|consen 113 -----IRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIV 187 (735)
T ss_pred -----hhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEE
Confidence 2469999999999667788999999999999999975421 122333 7888999999999999999
Q ss_pred EeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceE
Q 024451 155 TGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRI 234 (267)
Q Consensus 155 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v 234 (267)
+|+..+-+++||.++.+.+..+.. +...|..+..+++|..++++++||.|++||+...+.+..+ ..|.+.|
T Consensus 188 sGgtek~lr~wDprt~~kimkLrG-----HTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~----~vH~e~V 258 (735)
T KOG0308|consen 188 SGGTEKDLRLWDPRTCKKIMKLRG-----HTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATY----IVHKEGV 258 (735)
T ss_pred ecCcccceEEeccccccceeeeec-----cccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeE----EeccCce
Confidence 999999999999999887766542 3346999999999999999999999999999888887664 3688889
Q ss_pred EEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451 235 TCLGLSADGSALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 235 ~~~~~~p~~~~l~sgs~dg~i~~w~~~~ 262 (267)
+++..+|+=.++.+|+.||.|..=++..
T Consensus 259 WaL~~~~sf~~vYsG~rd~~i~~Tdl~n 286 (735)
T KOG0308|consen 259 WALQSSPSFTHVYSGGRDGNIYRTDLRN 286 (735)
T ss_pred EEEeeCCCcceEEecCCCCcEEecccCC
Confidence 9999999999999999999998777654
No 81
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=5.1e-26 Score=165.32 Aligned_cols=246 Identities=25% Similarity=0.382 Sum_probs=186.7
Q ss_pred CceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEec---CCCeeEEEee-CCCeEEEEeC
Q 024451 1 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVP---DEDTHLITSS-GDQTCVLWDI 76 (267)
Q Consensus 1 ~~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~~l~s~~-~d~~v~iwd~ 76 (267)
+|.+|+|+|.+|++|+.|++|++--....+.+ -......+..|.+-|..++|.. .++..|++++ .|..|.+=|-
T Consensus 93 yc~~ws~~geliatgsndk~ik~l~fn~dt~~--~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc 170 (350)
T KOG0641|consen 93 YCTAWSPCGELIATGSNDKTIKVLPFNADTCN--ATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDC 170 (350)
T ss_pred EEEEecCccCeEEecCCCceEEEEeccccccc--ccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeec
Confidence 57899999999999999999998765432211 1122345677999999999963 2345677654 4667777777
Q ss_pred CCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEee--cc-----ccceeEEEEecC
Q 024451 77 TTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH--GH-----EGDVNTVKFFPD 149 (267)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~--~~-----~~~i~~~~~~~~ 149 (267)
.++.....+ .+|.+.|.++-- .++-++++|+.|.+|++||++... .+..+. -| ...|.+++..|.
T Consensus 171 ~~g~~~~a~-----sghtghilalys--wn~~m~~sgsqdktirfwdlrv~~-~v~~l~~~~~~~glessavaav~vdps 242 (350)
T KOG0641|consen 171 GRGQGFHAL-----SGHTGHILALYS--WNGAMFASGSQDKTIRFWDLRVNS-CVNTLDNDFHDGGLESSAVAAVAVDPS 242 (350)
T ss_pred CCCCcceee-----cCCcccEEEEEE--ecCcEEEccCCCceEEEEeeeccc-eeeeccCcccCCCcccceeEEEEECCC
Confidence 776655544 578888877632 356799999999999999998654 233332 12 245888999999
Q ss_pred CCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecc-cccC
Q 024451 150 GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLG-SLQN 228 (267)
Q Consensus 150 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~-~~~~ 228 (267)
|+++++|-.|....+||++.+.+++.+.. +...|.++.|+|.-.++++++.|..|++-|++.. ...++. ....
T Consensus 243 grll~sg~~dssc~lydirg~r~iq~f~p-----hsadir~vrfsp~a~yllt~syd~~ikltdlqgd-la~el~~~vv~ 316 (350)
T KOG0641|consen 243 GRLLASGHADSSCMLYDIRGGRMIQRFHP-----HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD-LAHELPIMVVA 316 (350)
T ss_pred cceeeeccCCCceEEEEeeCCceeeeeCC-----CccceeEEEeCCCceEEEEecccceEEEeecccc-hhhcCceEEEE
Confidence 99999999999999999999988877643 3346999999999999999999999999997532 111111 1224
Q ss_pred CccceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451 229 SHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 229 ~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~ 262 (267)
.|.+.+..+.|+|..--+++.|.|+++.+|.+++
T Consensus 317 ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~~ 350 (350)
T KOG0641|consen 317 EHKDKAIQCRWHPQDFSFISSSADKTATLWALNG 350 (350)
T ss_pred eccCceEEEEecCccceeeeccCcceEEEeccCC
Confidence 6888888999999999999999999999998764
No 82
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=9e-27 Score=175.73 Aligned_cols=241 Identities=19% Similarity=0.291 Sum_probs=178.6
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
++.|+|.+..|+.+++||++++|++.... .+..-.|..++.+|.|.+. ..+++|+.||.|+.+|+.++..
T Consensus 18 ~v~f~~~~~~LLvssWDgslrlYdv~~~~--------l~~~~~~~~plL~c~F~d~--~~~~~G~~dg~vr~~Dln~~~~ 87 (323)
T KOG1036|consen 18 SVKFSPSSSDLLVSSWDGSLRLYDVPANS--------LKLKFKHGAPLLDCAFADE--STIVTGGLDGQVRRYDLNTGNE 87 (323)
T ss_pred eEEEcCcCCcEEEEeccCcEEEEeccchh--------hhhheecCCceeeeeccCC--ceEEEeccCceEEEEEecCCcc
Confidence 36789999999999999999999987631 2233468899999999874 4689999999999999998764
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT 161 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 161 (267)
..+ ..|...+.++...+. ...+++|++|++|++||.+. ......+. -...|.++... ++.|+.|+.|..
T Consensus 88 ~~i------gth~~~i~ci~~~~~-~~~vIsgsWD~~ik~wD~R~-~~~~~~~d-~~kkVy~~~v~--g~~LvVg~~~r~ 156 (323)
T KOG1036|consen 88 DQI------GTHDEGIRCIEYSYE-VGCVISGSWDKTIKFWDPRN-KVVVGTFD-QGKKVYCMDVS--GNRLVVGTSDRK 156 (323)
T ss_pred eee------ccCCCceEEEEeecc-CCeEEEcccCccEEEEeccc-cccccccc-cCceEEEEecc--CCEEEEeecCce
Confidence 432 358899999999854 45689999999999999985 22233332 23478888864 678999999999
Q ss_pred EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCcc------ceeeeccccc---CCccc
Q 024451 162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA------KVVLNLGSLQ---NSHEG 232 (267)
Q Consensus 162 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~------~~~~~~~~~~---~~~~~ 232 (267)
+.+||+++..... +.....-.-.+.++++-|++.-.++++-||.|.+=..... +...+..+.. ..---
T Consensus 157 v~iyDLRn~~~~~---q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~y 233 (323)
T KOG1036|consen 157 VLIYDLRNLDEPF---QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIY 233 (323)
T ss_pred EEEEEcccccchh---hhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEE
Confidence 9999999754332 1112222345789999999999999999998876332222 1111111100 01123
Q ss_pred eEEEEEECCCCCeEEEeECCCcEEEEecCceEec
Q 024451 233 RITCLGLSADGSALCTGSWDTNLKIWAFGGYRRV 266 (267)
Q Consensus 233 ~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~~~~ 266 (267)
+|++++|+|-...||||+.||.|.+|+....+|+
T Consensus 234 PVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl 267 (323)
T KOG1036|consen 234 PVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRL 267 (323)
T ss_pred EeceeEeccccceEEecCCCceEEEccCcchhhh
Confidence 8999999999999999999999999998877765
No 83
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=4.7e-27 Score=185.66 Aligned_cols=235 Identities=26% Similarity=0.385 Sum_probs=181.3
Q ss_pred CceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451 1 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL 80 (267)
Q Consensus 1 ~~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 80 (267)
++++.++||++|++|+.|..+.||+...- .....+++|.+.|.++.|-. +...+++++.|++|++|+++...
T Consensus 206 l~~avS~Dgkylatgg~d~~v~Iw~~~t~-------ehv~~~~ghr~~V~~L~fr~-gt~~lys~s~Drsvkvw~~~~~s 277 (479)
T KOG0299|consen 206 LTLAVSSDGKYLATGGRDRHVQIWDCDTL-------EHVKVFKGHRGAVSSLAFRK-GTSELYSASADRSVKVWSIDQLS 277 (479)
T ss_pred EEEEEcCCCcEEEecCCCceEEEecCccc-------chhhcccccccceeeeeeec-CccceeeeecCCceEEEehhHhH
Confidence 47889999999999999999999998763 24556899999999999965 44579999999999999997543
Q ss_pred eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCC
Q 024451 81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG 160 (267)
Q Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~ 160 (267)
...+ ..+|.+.|..+..... .+.+-.|+.|+++++|++.. .....+.+|.+.+.|++|-. ..+|++|+.||
T Consensus 278 ~vet-----lyGHqd~v~~IdaL~r-eR~vtVGgrDrT~rlwKi~e--esqlifrg~~~sidcv~~In-~~HfvsGSdnG 348 (479)
T KOG0299|consen 278 YVET-----LYGHQDGVLGIDALSR-ERCVTVGGRDRTVRLWKIPE--ESQLIFRGGEGSIDCVAFIN-DEHFVSGSDNG 348 (479)
T ss_pred HHHH-----HhCCccceeeechhcc-cceEEeccccceeEEEeccc--cceeeeeCCCCCeeeEEEec-ccceeeccCCc
Confidence 3322 3589999999988743 45555566999999999853 34556788999999999974 57899999999
Q ss_pred cEEEEeCCCCeeeEEEEeecCCCCC-------CcEEEEEEccCCCEEEEEEeCCeEEEEeCCccc-eeeecccccCCccc
Q 024451 161 TCRLFDIRTGHQLQVYYQQHGENEI-------PHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK-VVLNLGSLQNSHEG 232 (267)
Q Consensus 161 ~i~iwd~~~~~~~~~~~~~~~~~~~-------~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~ 232 (267)
.|-+|++...+.+......|+.... .+|++++..|....+++|+.+|.|++|-...+- .+..+..+ ...+
T Consensus 349 ~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~l--s~~G 426 (479)
T KOG0299|consen 349 SIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSL--SLVG 426 (479)
T ss_pred eEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeec--cccc
Confidence 9999999887766555444443222 379999999999999999999999999876552 12112111 3567
Q ss_pred eEEEEEECCCCCeEEE-eECCCc
Q 024451 233 RITCLGLSADGSALCT-GSWDTN 254 (267)
Q Consensus 233 ~v~~~~~~p~~~~l~s-gs~dg~ 254 (267)
.|++++|+++|+.|++ .+....
T Consensus 427 fVNsl~f~~sgk~ivagiGkEhR 449 (479)
T KOG0299|consen 427 FVNSLAFSNSGKRIVAGIGKEHR 449 (479)
T ss_pred EEEEEEEccCCCEEEEecccccc
Confidence 8999999999995554 444433
No 84
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=7.7e-27 Score=185.64 Aligned_cols=240 Identities=25% Similarity=0.327 Sum_probs=185.2
Q ss_pred ceeeCCCCC-eEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451 2 TCAFSPTGQ-SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL 80 (267)
Q Consensus 2 ~~~~~~~g~-~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 80 (267)
.++|+|... .+++++.- .+.+|+.... ...+.+..-+.-|+++.|-.++ .++++|...|.|+++|..+..
T Consensus 31 sl~fsp~~P~d~aVt~S~-rvqly~~~~~-------~~~k~~srFk~~v~s~~fR~DG-~LlaaGD~sG~V~vfD~k~r~ 101 (487)
T KOG0310|consen 31 SLCFSPKHPYDFAVTSSV-RVQLYSSVTR-------SVRKTFSRFKDVVYSVDFRSDG-RLLAAGDESGHVKVFDMKSRV 101 (487)
T ss_pred eEecCCCCCCceEEeccc-EEEEEecchh-------hhhhhHHhhccceeEEEeecCC-eEEEccCCcCcEEEeccccHH
Confidence 478998663 34444433 5889987542 2344455667789999997765 688999999999999965532
Q ss_pred eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCC-EEEEeeCC
Q 024451 81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN-RFGTGSDD 159 (267)
Q Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d 159 (267)
-. +...+|+.++..+.|++.++.++++|+.|+.+++||+.... .+..+.+|++-|.|.+++|... .+++||-|
T Consensus 102 iL-----R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~-v~~~l~~htDYVR~g~~~~~~~hivvtGsYD 175 (487)
T KOG0310|consen 102 IL-----RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY-VQAELSGHTDYVRCGDISPANDHIVVTGSYD 175 (487)
T ss_pred HH-----HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE-EEEEecCCcceeEeeccccCCCeEEEecCCC
Confidence 22 22357999999999999999999999999999999997543 4667889999999999999655 78899999
Q ss_pred CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEE
Q 024451 160 GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGL 239 (267)
Q Consensus 160 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~ 239 (267)
|+||+||++...... .. .++..+|.++.+-|.|..+++++ ...+++||+..+...... ...|...|+|+.+
T Consensus 176 g~vrl~DtR~~~~~v-~e----lnhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~---~~~H~KtVTcL~l 246 (487)
T KOG0310|consen 176 GKVRLWDTRSLTSRV-VE----LNHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTS---MFNHNKTVTCLRL 246 (487)
T ss_pred ceEEEEEeccCCcee-EE----ecCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhh---hhcccceEEEEEe
Confidence 999999999763211 11 23345799999999999998874 457999998855443221 1349999999999
Q ss_pred CCCCCeEEEeECCCcEEEEecCceEe
Q 024451 240 SADGSALCTGSWDTNLKIWAFGGYRR 265 (267)
Q Consensus 240 ~p~~~~l~sgs~dg~i~~w~~~~~~~ 265 (267)
..++.-|++||-|+.+++|+++.++-
T Consensus 247 ~s~~~rLlS~sLD~~VKVfd~t~~Kv 272 (487)
T KOG0310|consen 247 ASDSTRLLSGSLDRHVKVFDTTNYKV 272 (487)
T ss_pred ecCCceEeecccccceEEEEccceEE
Confidence 99999999999999999999877653
No 85
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=6.3e-28 Score=185.62 Aligned_cols=231 Identities=20% Similarity=0.338 Sum_probs=179.1
Q ss_pred ceeeCCCC-CeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451 2 TCAFSPTG-QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL 80 (267)
Q Consensus 2 ~~~~~~~g-~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 80 (267)
|++-+|.. ..+++|+.||.|++||+... .+.+++.+|.+.|..+.+.. +.+++++.|++|+.|.++-.
T Consensus 71 ~lakhp~~ls~~aSGs~DG~VkiWnlsqR-------~~~~~f~AH~G~V~Gi~v~~---~~~~tvgdDKtvK~wk~~~~- 139 (433)
T KOG0268|consen 71 CLAKHPNKLSTVASGSCDGEVKIWNLSQR-------ECIRTFKAHEGLVRGICVTQ---TSFFTVGDDKTVKQWKIDGP- 139 (433)
T ss_pred hhhcCcchhhhhhccccCceEEEEehhhh-------hhhheeecccCceeeEEecc---cceEEecCCcceeeeeccCC-
Confidence 45556655 67999999999999998753 47788999999999999866 35899999999999987653
Q ss_pred eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecC-CCEEEEeeCC
Q 024451 81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD-GNRFGTGSDD 159 (267)
Q Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d 159 (267)
...++-+ ...+..++-+. ....++|+|. .|-|||... ..++.++.--.+.|.++.|+|. ...|++|+.|
T Consensus 140 p~~tilg------~s~~~gIdh~~-~~~~FaTcGe--~i~IWD~~R-~~Pv~smswG~Dti~svkfNpvETsILas~~sD 209 (433)
T KOG0268|consen 140 PLHTILG------KSVYLGIDHHR-KNSVFATCGE--QIDIWDEQR-DNPVSSMSWGADSISSVKFNPVETSILASCASD 209 (433)
T ss_pred cceeeec------ccccccccccc-ccccccccCc--eeeeccccc-CCccceeecCCCceeEEecCCCcchheeeeccC
Confidence 2233211 12233333332 2346777776 488999864 4577788766788999999995 4678888899
Q ss_pred CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEE
Q 024451 160 GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGL 239 (267)
Q Consensus 160 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~ 239 (267)
+.|-+||++.++.+....... .-..++|+|..-.+++|++|..++.||++........ ...|.+.|..++|
T Consensus 210 rsIvLyD~R~~~Pl~KVi~~m------RTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v---~~dhvsAV~dVdf 280 (433)
T KOG0268|consen 210 RSIVLYDLRQASPLKKVILTM------RTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNV---HKDHVSAVMDVDF 280 (433)
T ss_pred CceEEEecccCCccceeeeec------cccceecCccccceeeccccccceehhhhhhcccchh---hcccceeEEEecc
Confidence 999999999988776544322 2368899998888999999999999998765544433 4679999999999
Q ss_pred CCCCCeEEEeECCCcEEEEecCc
Q 024451 240 SADGSALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 240 ~p~~~~l~sgs~dg~i~~w~~~~ 262 (267)
||.|+.+++||.|++|+||..+.
T Consensus 281 sptG~EfvsgsyDksIRIf~~~~ 303 (433)
T KOG0268|consen 281 SPTGQEFVSGSYDKSIRIFPVNH 303 (433)
T ss_pred CCCcchhccccccceEEEeecCC
Confidence 99999999999999999998754
No 86
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=5.5e-27 Score=178.03 Aligned_cols=246 Identities=26% Similarity=0.413 Sum_probs=193.5
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeec------CCCCCC-------------------------CCC--CcccccccCCeee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNL------NSPTDK-------------------------DGN--LPVSRMLSGHKGY 48 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~------~~~~~~-------------------------~~~--~~~~~~~~~h~~~ 48 (267)
+++|++.+.++++++-|++..||.. ..+..+ ++. ..+...+.+|.+.
T Consensus 195 sikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~v 274 (481)
T KOG0300|consen 195 SIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAV 274 (481)
T ss_pred eEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccc
Confidence 5789999999999999999999972 221100 000 0123457899999
Q ss_pred EEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcc
Q 024451 49 VSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS 128 (267)
Q Consensus 49 v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~ 128 (267)
|.++.|...+ +.++++++|.+-.+||+++++.+..+ .||....+.++.+| .++++++.+.|.+.++||++...
T Consensus 275 V~a~dWL~gg-~Q~vTaSWDRTAnlwDVEtge~v~~L-----tGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFReaI 347 (481)
T KOG0300|consen 275 VSACDWLAGG-QQMVTASWDRTANLWDVETGEVVNIL-----TGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREAI 347 (481)
T ss_pred eEehhhhcCc-ceeeeeeccccceeeeeccCceeccc-----cCcchhccccccCC-cceEEEEeccCceeEeccchhhc
Confidence 9999998854 57999999999999999999877665 57888888887775 67899999999999999999766
Q ss_pred cceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeee-EEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCC
Q 024451 129 RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQL-QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG 207 (267)
Q Consensus 129 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg 207 (267)
..+..+++|...|+++.|..+ ..+++|+.|.+|++||+++-... ..+. ...++..++.+..+.+|+.-..+.
T Consensus 348 ~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRsplATIR------tdS~~NRvavs~g~~iIAiPhDNR 420 (481)
T KOG0300|consen 348 QSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSPLATIR------TDSPANRVAVSKGHPIIAIPHDNR 420 (481)
T ss_pred ceeeeecccccceeEEEEecC-CceeecCCCceEEEeeeccccCcceeee------cCCccceeEeecCCceEEeccCCc
Confidence 778889999999999999865 56899999999999999864432 2221 123578888888888999999999
Q ss_pred eEEEEeCCccceeeecccccCCccceEEEEEECCCC--CeEEEeECCCcEEEEecC
Q 024451 208 DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADG--SALCTGSWDTNLKIWAFG 261 (267)
Q Consensus 208 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~~l~sgs~dg~i~~w~~~ 261 (267)
.|++||+...+...-.......|..-|.|++|..+- .-|.+|+-|..+.=|.++
T Consensus 421 qvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in 476 (481)
T KOG0300|consen 421 QVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKIN 476 (481)
T ss_pred eEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEec
Confidence 999999876554432222345799999999997442 346788899999999875
No 87
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.6e-26 Score=173.83 Aligned_cols=239 Identities=18% Similarity=0.267 Sum_probs=177.4
Q ss_pred eEEEccCCCeEEEeecCCCCCC-----CCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEe
Q 024451 11 SVACGGLDSVCSIFNLNSPTDK-----DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVF 85 (267)
Q Consensus 11 ~l~~~~~d~~v~~w~~~~~~~~-----~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 85 (267)
.++.|+++..|--+++..+... +..+.....+..|.++|++++.+ ..+++|||.|.+|+|||+.+..+...+
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs---~~~~aSGssDetI~IYDm~k~~qlg~l 79 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS---GPYVASGSSDETIHIYDMRKRKQLGIL 79 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec---ceeEeccCCCCcEEEEeccchhhhcce
Confidence 3788899988888887654311 11223356778999999999984 369999999999999999876554443
Q ss_pred CCccccCCccceEEEEEeCCC-CeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEE
Q 024451 86 GGEFQSGHTADVLSVSISGSN-SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRL 164 (267)
Q Consensus 86 ~~~~~~~~~~~i~~~~~~~~~-~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i 164 (267)
..|.+.|+++.|.++. ...+++|+.||.|.+|+.... .....+++|.+.|+.++.+|.+++.++.+.|+.+++
T Consensus 80 -----l~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W-~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~ 153 (362)
T KOG0294|consen 80 -----LSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW-ELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRT 153 (362)
T ss_pred -----eccccceEEEEecCCcchhheeeecCCCcEEEEEcCCe-EEeeeecccccccceeEecCCCceEEEEcCCceeee
Confidence 4689999999998653 236789999999999998754 567889999999999999999999999999999999
Q ss_pred EeCCCCeeeEEEEeec--------CCC--------------------------CCCcEEEEEEccCCCEEEEEEeCCeEE
Q 024451 165 FDIRTGHQLQVYYQQH--------GEN--------------------------EIPHVTSIAFSISGRLLFAGYSNGDCY 210 (267)
Q Consensus 165 wd~~~~~~~~~~~~~~--------~~~--------------------------~~~~v~~~~~s~~~~~l~~g~~dg~i~ 210 (267)
||+-.++.-....-.+ ..+ ....+.++.|- ++..+++|..|+.+.
T Consensus 154 WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~ 232 (362)
T KOG0294|consen 154 WNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEWIS 232 (362)
T ss_pred ehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCceEE
Confidence 9987765322111000 000 00112233332 456788888888888
Q ss_pred EEeCCccceeeecccccCCccceEEEEEE--CCCCCeEEEeECCCcEEEEecCce
Q 024451 211 VWDTLLAKVVLNLGSLQNSHEGRITCLGL--SADGSALCTGSWDTNLKIWAFGGY 263 (267)
Q Consensus 211 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~p~~~~l~sgs~dg~i~~w~~~~~ 263 (267)
+||.........+ ..|..+|..+.+ .|++.+|+++|.||.|++|++..-
T Consensus 233 ~~D~ds~~~~~~~----~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 233 LKDTDSDTPLTEF----LAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred EeccCCCccceee----ecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 8887654443332 579999999884 578999999999999999998654
No 88
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=1.2e-27 Score=186.68 Aligned_cols=238 Identities=25% Similarity=0.350 Sum_probs=186.2
Q ss_pred eeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeE
Q 024451 3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT 82 (267)
Q Consensus 3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 82 (267)
..|-++...|++||.|..|++|++.... .....++.|..+.|+++.|.+++ .++++++.|+.+++|++.+....
T Consensus 181 v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-----~~~~~tLaGs~g~it~~d~d~~~-~~~iAas~d~~~r~Wnvd~~r~~ 254 (459)
T KOG0288|consen 181 VEFLRNSDTLATGGSDRIIKLWNVLGEK-----SELISTLAGSLGNITSIDFDSDN-KHVIAASNDKNLRLWNVDSLRLR 254 (459)
T ss_pred eEEccCcchhhhcchhhhhhhhhcccch-----hhhhhhhhccCCCcceeeecCCC-ceEEeecCCCceeeeeccchhhh
Confidence 4577777889999999999999986522 23566788999999999999876 47889999999999999987666
Q ss_pred EEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcE
Q 024451 83 SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTC 162 (267)
Q Consensus 83 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i 162 (267)
.++ .+|++.+.++.+...+.+ +++|+.|.+||.||+.. ....+.+. ....+..+... ...++++-.|++|
T Consensus 255 ~TL-----sGHtdkVt~ak~~~~~~~-vVsgs~DRtiK~WDl~k-~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~Dkkv 324 (459)
T KOG0288|consen 255 HTL-----SGHTDKVTAAKFKLSHSR-VVSGSADRTIKLWDLQK-AYCSKTVL-PGSQCNDIVCS--ISDVISGHFDKKV 324 (459)
T ss_pred hhh-----cccccceeeehhhccccc-eeeccccchhhhhhhhh-hheecccc-ccccccceEec--ceeeeecccccce
Confidence 555 579999999999865554 89999999999999864 23333332 23445666654 4578889999999
Q ss_pred EEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCC
Q 024451 163 RLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD 242 (267)
Q Consensus 163 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 242 (267)
|+||.++......... .+.|+++..++++..+.+.+-|..+.+.|+++.+....+.-........++.+.|||+
T Consensus 325 RfwD~Rs~~~~~sv~~------gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd 398 (459)
T KOG0288|consen 325 RFWDIRSADKTRSVPL------GGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPD 398 (459)
T ss_pred EEEeccCCceeeEeec------CcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCC
Confidence 9999998876544321 2369999999999999999999999999998876554432111122334889999999
Q ss_pred CCeEEEeECCCcEEEEecCc
Q 024451 243 GSALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 243 ~~~l~sgs~dg~i~~w~~~~ 262 (267)
+.|+|+||.||.|.||+..+
T Consensus 399 ~~YvaAGS~dgsv~iW~v~t 418 (459)
T KOG0288|consen 399 GSYVAAGSADGSVYIWSVFT 418 (459)
T ss_pred CceeeeccCCCcEEEEEccC
Confidence 99999999999999998644
No 89
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.95 E-value=7.2e-28 Score=191.30 Aligned_cols=212 Identities=28% Similarity=0.506 Sum_probs=166.2
Q ss_pred ccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCC-CeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCC
Q 024451 38 VSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT-GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD 116 (267)
Q Consensus 38 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d 116 (267)
....+.||+..|.++.|.|...-+|++++.|+.|+|||+-. +..+.+| .+|...|..++|+.. +..|++++.|
T Consensus 206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf-----~gH~k~Vrd~~~s~~-g~~fLS~sfD 279 (503)
T KOG0282|consen 206 LSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTF-----KGHRKPVRDASFNNC-GTSFLSASFD 279 (503)
T ss_pred heeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhh-----hcchhhhhhhhcccc-CCeeeeeecc
Confidence 45578899999999999996667899999999999999976 4555554 589999999999964 5668899999
Q ss_pred CeEEEEeCCCcccceEEeeccccceeEEEEecCC-CEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEcc
Q 024451 117 STARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG-NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI 195 (267)
Q Consensus 117 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 195 (267)
+.+++||++++. ....+. -...+.|+.|+|++ +.|++|+.|+.|+.||+++++.++.+- .+.+.|..+.|-+
T Consensus 280 ~~lKlwDtETG~-~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd-----~hLg~i~~i~F~~ 352 (503)
T KOG0282|consen 280 RFLKLWDTETGQ-VLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD-----RHLGAILDITFVD 352 (503)
T ss_pred eeeeeeccccce-EEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH-----hhhhheeeeEEcc
Confidence 999999998654 444443 23457899999987 889999999999999999988654432 2345799999999
Q ss_pred CCCEEEEEEeCCeEEEEeCCccceeeecc------------------------------------------cccCCcc--
Q 024451 196 SGRLLFAGYSNGDCYVWDTLLAKVVLNLG------------------------------------------SLQNSHE-- 231 (267)
Q Consensus 196 ~~~~l~~g~~dg~i~i~d~~~~~~~~~~~------------------------------------------~~~~~~~-- 231 (267)
+|..+++.+.|+.++||+...+-.+.... ....+|.
T Consensus 353 ~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~va 432 (503)
T KOG0282|consen 353 EGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVA 432 (503)
T ss_pred CCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceecc
Confidence 99999999999999999865432111000 0001232
Q ss_pred ceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451 232 GRITCLGLSADGSALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 232 ~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~ 262 (267)
+.-..+.|||||++|++|+.||.+.+|+...
T Consensus 433 Gys~~v~fSpDG~~l~SGdsdG~v~~wdwkt 463 (503)
T KOG0282|consen 433 GYSCQVDFSPDGRTLCSGDSDGKVNFWDWKT 463 (503)
T ss_pred CceeeEEEcCCCCeEEeecCCccEEEeechh
Confidence 3345689999999999999999999999643
No 90
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.95 E-value=1.3e-25 Score=166.64 Aligned_cols=208 Identities=26% Similarity=0.412 Sum_probs=172.0
Q ss_pred cccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEE
Q 024451 41 MLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 120 (267)
Q Consensus 41 ~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~ 120 (267)
.++||..+++-+.++.+++ +|++++.|.+..+|-..+++++.++ .+|.+.|++++++- ..+.+++|+.|.+++
T Consensus 5 ~l~GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGerlGty-----~GHtGavW~~Did~-~s~~liTGSAD~t~k 77 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGERLGTY-----DGHTGAVWCCDIDW-DSKHLITGSADQTAK 77 (327)
T ss_pred ccccCccccceEEecCCCc-EEEEecCCCCceEEEecCCceeeee-----cCCCceEEEEEecC-CcceeeeccccceeE
Confidence 4689999999999999765 8999999999999999889888877 48999999999985 456789999999999
Q ss_pred EEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeC-----CCcEEEEeCCCCe-------eeEEEEeecCCCCCCcE
Q 024451 121 LWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD-----DGTCRLFDIRTGH-------QLQVYYQQHGENEIPHV 188 (267)
Q Consensus 121 iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~~~-------~~~~~~~~~~~~~~~~v 188 (267)
+||++.+ +.+..++ -+.+|..+.|+++|++++...+ .+.|.++|++... +...+. .....+
T Consensus 78 LWDv~tG-k~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~-----t~~ski 150 (327)
T KOG0643|consen 78 LWDVETG-KQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP-----TPDSKI 150 (327)
T ss_pred EEEcCCC-cEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEec-----CCccce
Confidence 9999864 4555554 3578999999999998877654 3579999998432 122221 122468
Q ss_pred EEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCceEe
Q 024451 189 TSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGYRR 265 (267)
Q Consensus 189 ~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~~~ 265 (267)
+.+-|+|-+.+|++|.+||.|.+||+++++...... ..|...|+.+.++|+..+++++|.|.+.++||+..|..
T Consensus 151 t~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~---~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v 224 (327)
T KOG0643|consen 151 TSALWGPLGETIIAGHEDGSISIYDARTGKELVDSD---EEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEV 224 (327)
T ss_pred eeeeecccCCEEEEecCCCcEEEEEcccCceeeech---hhhccccccccccCCcceEEecccCccceeeeccceee
Confidence 889999999999999999999999999887665443 46888999999999999999999999999999877753
No 91
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.95 E-value=1.3e-26 Score=182.87 Aligned_cols=209 Identities=18% Similarity=0.359 Sum_probs=167.4
Q ss_pred ceeeCCCC-CeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451 2 TCAFSPTG-QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL 80 (267)
Q Consensus 2 ~~~~~~~g-~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 80 (267)
.++|++.. -.|++++.|+++++||+...............+.+|...|..|+|+|....++++++.|+.+.|||.++..
T Consensus 182 glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~ 261 (422)
T KOG0264|consen 182 GLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNT 261 (422)
T ss_pred ccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCC
Confidence 35676533 56999999999999999764332333455667899999999999999888899999999999999999631
Q ss_pred eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecC-CCEEEEeeCC
Q 024451 81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD-GNRFGTGSDD 159 (267)
Q Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d 159 (267)
... .....+|...+++++|+|-+..+|+||+.|++|++||+|...++...+.+|...|.++.|+|. ...||+++.|
T Consensus 262 -~~~--~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D 338 (422)
T KOG0264|consen 262 -SKP--SHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTD 338 (422)
T ss_pred -CCC--cccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccC
Confidence 110 112357999999999999999999999999999999999888888899999999999999995 5688999999
Q ss_pred CcEEEEeCCCCeee-----------EEEEeecCCCCCCcEEEEEEccCCCEEE-EEEeCCeEEEEeCC
Q 024451 160 GTCRLFDIRTGHQL-----------QVYYQQHGENEIPHVTSIAFSISGRLLF-AGYSNGDCYVWDTL 215 (267)
Q Consensus 160 ~~i~iwd~~~~~~~-----------~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~g~~dg~i~i~d~~ 215 (267)
+.+.+||+..-... ..++. | .++...|..+.|+|+..+.+ +...|+.+.||.+.
T Consensus 339 ~rl~vWDls~ig~eq~~eda~dgppEllF~-H-gGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 339 RRLNVWDLSRIGEEQSPEDAEDGPPELLFI-H-GGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred CcEEEEeccccccccChhhhccCCcceeEE-e-cCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 99999998653221 12222 2 23556799999999998764 56688999999864
No 92
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.9e-26 Score=192.29 Aligned_cols=208 Identities=27% Similarity=0.404 Sum_probs=159.6
Q ss_pred ccc-CCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEE------------------------------------
Q 024451 41 MLS-GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS------------------------------------ 83 (267)
Q Consensus 41 ~~~-~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~------------------------------------ 83 (267)
.+. +|++.|.++.|++++ .|||+||.|+.|+||.+...+...
T Consensus 261 e~~~ah~gaIw~mKFS~DG-KyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~ 339 (712)
T KOG0283|consen 261 EISNAHKGAIWAMKFSHDG-KYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS 339 (712)
T ss_pred ccccccCCcEEEEEeCCCC-ceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence 445 899999999999976 699999999999999875510000
Q ss_pred ---------Ee----------CCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEE
Q 024451 84 ---------VF----------GGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTV 144 (267)
Q Consensus 84 ---------~~----------~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~ 144 (267)
.+ +.....||...|..+.|+- .++|++++.|.+||+|.+.. ...++.+ .|.+-|+|+
T Consensus 340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK--n~fLLSSSMDKTVRLWh~~~-~~CL~~F-~HndfVTcV 415 (712)
T KOG0283|consen 340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK--NNFLLSSSMDKTVRLWHPGR-KECLKVF-SHNDFVTCV 415 (712)
T ss_pred ccccCCccccCCCccccccccchhhhhccchhheeccccc--CCeeEeccccccEEeecCCC-cceeeEE-ecCCeeEEE
Confidence 00 0011248999999999984 45889999999999999874 4455656 599999999
Q ss_pred EEec-CCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeec
Q 024451 145 KFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL 223 (267)
Q Consensus 145 ~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~ 223 (267)
+|+| |.+||++|+-|+++|||++...+.. .+...+ .-|+++||.|+|++.++|+-+|..++|+....+.....
T Consensus 416 aFnPvDDryFiSGSLD~KvRiWsI~d~~Vv-~W~Dl~-----~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~ 489 (712)
T KOG0283|consen 416 AFNPVDDRYFISGSLDGKVRLWSISDKKVV-DWNDLR-----DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDF 489 (712)
T ss_pred EecccCCCcEeecccccceEEeecCcCeeE-eehhhh-----hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEee
Confidence 9999 7899999999999999999765432 222211 35899999999999999999999999998766654432
Q ss_pred ccc-----cCCccceEEEEEECCCCC-eEEEeECCCcEEEEec
Q 024451 224 GSL-----QNSHEGRITCLGLSADGS-ALCTGSWDTNLKIWAF 260 (267)
Q Consensus 224 ~~~-----~~~~~~~v~~~~~~p~~~-~l~sgs~dg~i~~w~~ 260 (267)
.-. ...|. .|+.+.|.|... -+++.|.|-.||||+.
T Consensus 490 ~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~ 531 (712)
T KOG0283|consen 490 HIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDG 531 (712)
T ss_pred eEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEec
Confidence 110 11244 899999997543 4666789999999996
No 93
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=1.6e-26 Score=174.87 Aligned_cols=217 Identities=23% Similarity=0.418 Sum_probs=170.8
Q ss_pred ccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCC----eeEEEeCC---------ccccCCccceEEEEEeCCC
Q 024451 40 RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG----LRTSVFGG---------EFQSGHTADVLSVSISGSN 106 (267)
Q Consensus 40 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~----~~~~~~~~---------~~~~~~~~~i~~~~~~~~~ 106 (267)
..+..|++++.+.+|+|++ .++++|+.|.+|+|.|++.. +...+..+ +....|.+.|+.+.|+|.
T Consensus 106 ~ylt~HK~~cR~aafs~DG-~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr- 183 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDG-SLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR- 183 (430)
T ss_pred EEEeecccceeeeeeCCCC-cEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch-
Confidence 4567899999999999976 68999999999999999721 11111111 122468899999999975
Q ss_pred CeEEEEecCCCeEEEEeCCCccc--ceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCC
Q 024451 107 SRMFVSGSCDSTARLWDTRVASR--AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENE 184 (267)
Q Consensus 107 ~~~~~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 184 (267)
..++++++.|++|++||...... ..+.+ ....+|.++.|+|.|.+++.|.+--++++||+.+-++..... ....+
T Consensus 184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsan--Pd~qh 260 (430)
T KOG0640|consen 184 ETILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSAN--PDDQH 260 (430)
T ss_pred hheEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecC--ccccc
Confidence 56899999999999999864321 12222 235679999999999999999999999999999876643221 12334
Q ss_pred CCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCcc-ceEEEEEECCCCCeEEEeECCCcEEEEecCce
Q 024451 185 IPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHE-GRITCLGLSADGSALCTGSWDTNLKIWAFGGY 263 (267)
Q Consensus 185 ~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~ 263 (267)
...|.++.+++.++..++|+.||.|++||--.++.+..+. ..|. ..|.++.|..||+|+++.+.|..+++|.+..-
T Consensus 261 t~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~---~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~ 337 (430)
T KOG0640|consen 261 TGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIG---NAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTG 337 (430)
T ss_pred ccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHH---hhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCC
Confidence 5679999999999999999999999999988888776654 3454 57999999999999999999999999987543
Q ss_pred E
Q 024451 264 R 264 (267)
Q Consensus 264 ~ 264 (267)
+
T Consensus 338 R 338 (430)
T KOG0640|consen 338 R 338 (430)
T ss_pred c
Confidence 3
No 94
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=4.7e-26 Score=189.04 Aligned_cols=241 Identities=20% Similarity=0.312 Sum_probs=194.4
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecC--CCeeEEEeeCCCeEEEEeCCCC
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD--EDTHLITSSGDQTCVLWDITTG 79 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~~l~s~~~d~~v~iwd~~~~ 79 (267)
+++.+|+|++|++|..-|.+++|++..- .....+.+|..+|.|+.|+.. +..+|++|+.|.-|.+||+...
T Consensus 464 ~~~vSp~gqhLAsGDr~GnlrVy~Lq~l-------~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn 536 (1080)
T KOG1408|consen 464 ALAVSPDGQHLASGDRGGNLRVYDLQEL-------EYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN 536 (1080)
T ss_pred EEEECCCcceecccCccCceEEEEehhh-------hhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc
Confidence 5789999999999999999999998752 355678899999999999742 2357999999999999999654
Q ss_pred eeEEEeCCccccCCccceEEEEEeCCC-CeEEEEecCCCeEEEEeCCCcccceEEeecc-----ccceeEEEEecCCCEE
Q 024451 80 LRTSVFGGEFQSGHTADVLSVSISGSN-SRMFVSGSCDSTARLWDTRVASRAVRTFHGH-----EGDVNTVKFFPDGNRF 153 (267)
Q Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l 153 (267)
.... +...+|...|+++.|...+ +..+++++.|+.|.+ +..+.......+..| ...++.++..|..+++
T Consensus 537 y~l~----qtld~HSssITsvKFa~~gln~~MiscGADksimF-r~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v 611 (1080)
T KOG1408|consen 537 YDLV----QTLDGHSSSITSVKFACNGLNRKMISCGADKSIMF-RVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLV 611 (1080)
T ss_pred cchh----hhhcccccceeEEEEeecCCceEEEeccCchhhhe-ehhccccCceeccccccccccceEEEeeeCCCcceE
Confidence 3221 2335799999999998543 356789999987744 333211112222211 3468899999999999
Q ss_pred EEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccce
Q 024451 154 GTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGR 233 (267)
Q Consensus 154 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 233 (267)
+++++|+.|+|||+.++++...|++.+. +.+....+..+|.|.|+++.++|..+.++|..+++.+..+ .+|.+.
T Consensus 612 ~t~cQDrnirif~i~sgKq~k~FKgs~~--~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m----~GHsE~ 685 (1080)
T KOG1408|consen 612 VTVCQDRNIRIFDIESGKQVKSFKGSRD--HEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQM----TGHSEA 685 (1080)
T ss_pred EEEecccceEEEeccccceeeeeccccc--CCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhh----cCcchh
Confidence 9999999999999999999888776543 3345677889999999999999999999999999988766 579999
Q ss_pred EEEEEECCCCCeEEEeECCCcEEEEec
Q 024451 234 ITCLGLSADGSALCTGSWDTNLKIWAF 260 (267)
Q Consensus 234 v~~~~~~p~~~~l~sgs~dg~i~~w~~ 260 (267)
|+.+.|.+|.++|++.+.||-|.+|.+
T Consensus 686 VTG~kF~nDCkHlISvsgDgCIFvW~l 712 (1080)
T KOG1408|consen 686 VTGVKFLNDCKHLISVSGDGCIFVWKL 712 (1080)
T ss_pred eeeeeecccchhheeecCCceEEEEEC
Confidence 999999999999999999999999986
No 95
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=1.3e-27 Score=198.07 Aligned_cols=224 Identities=23% Similarity=0.428 Sum_probs=187.5
Q ss_pred CCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEe
Q 024451 6 SPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVF 85 (267)
Q Consensus 6 ~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 85 (267)
-..++.+++||+|-.+-+|....+. ..-.+.+|..+|-|+.|++.+ .+|++|+.+|+|++||++....+..
T Consensus 37 ~~s~r~~~~Gg~~~k~~L~~i~kp~-------~i~S~~~hespIeSl~f~~~E-~LlaagsasgtiK~wDleeAk~vrt- 107 (825)
T KOG0267|consen 37 RKSSRSLVTGGEDEKVNLWAIGKPN-------AITSLTGHESPIESLTFDTSE-RLLAAGSASGTIKVWDLEEAKIVRT- 107 (825)
T ss_pred eccceeeccCCCceeeccccccCCc-------hhheeeccCCcceeeecCcch-hhhcccccCCceeeeehhhhhhhhh-
Confidence 3467889999999999999987654 233588999999999999864 6899999999999999987654433
Q ss_pred CCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEE
Q 024451 86 GGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLF 165 (267)
Q Consensus 86 ~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw 165 (267)
..+|...+.++.|+| ...++++|+.|+.+++||.+.. .+...+.+|...+..+.|.|+|++++++++|.+++||
T Consensus 108 ----Ltgh~~~~~sv~f~P-~~~~~a~gStdtd~~iwD~Rk~-Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~ 181 (825)
T KOG0267|consen 108 ----LTGHLLNITSVDFHP-YGEFFASGSTDTDLKIWDIRKK-GCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIW 181 (825)
T ss_pred ----hhccccCcceeeecc-ceEEeccccccccceehhhhcc-CceeeecCCcceeEEEeecCCCceeeccCCcceeeee
Confidence 357999999999986 5677899999999999999843 4677888899999999999999999999999999999
Q ss_pred eCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCe
Q 024451 166 DIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSA 245 (267)
Q Consensus 166 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 245 (267)
|...++.+..|.. +.+.+.++.|+|..-.++.|+.|+.+++||+++.+.+... ......|.+++|+|+++.
T Consensus 182 d~~agk~~~ef~~-----~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~----~~~~~~v~~~~fn~~~~~ 252 (825)
T KOG0267|consen 182 DLTAGKLSKEFKS-----HEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSG----KPETDGVRSLAFNPDGKI 252 (825)
T ss_pred ccccccccccccc-----ccccccccccCchhhhhccCCCCceeeeeccceeEEeecc----CCccCCceeeeecCCcee
Confidence 9988876655432 2346888999999999999999999999999887776544 234678999999999999
Q ss_pred EEEeECCC
Q 024451 246 LCTGSWDT 253 (267)
Q Consensus 246 l~sgs~dg 253 (267)
+++|-.+.
T Consensus 253 ~~~G~q~s 260 (825)
T KOG0267|consen 253 VLSGEQIS 260 (825)
T ss_pred eecCchhh
Confidence 99887653
No 96
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.95 E-value=2.5e-26 Score=168.95 Aligned_cols=196 Identities=24% Similarity=0.481 Sum_probs=159.6
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
+|+|+.|.++|+|||.|..+|+||+..+.- ....+.+|.+.|..+.|...+ ..++|++.|++||+||..++..
T Consensus 105 ~~af~~ds~~lltgg~ekllrvfdln~p~A------pp~E~~ghtg~Ir~v~wc~eD-~~iLSSadd~tVRLWD~rTgt~ 177 (334)
T KOG0278|consen 105 AVAFSQDSNYLLTGGQEKLLRVFDLNRPKA------PPKEISGHTGGIRTVLWCHED-KCILSSADDKTVRLWDHRTGTE 177 (334)
T ss_pred eEEecccchhhhccchHHHhhhhhccCCCC------CchhhcCCCCcceeEEEeccC-ceEEeeccCCceEEEEeccCcE
Confidence 589999999999999999999999976542 234578999999999998754 5688889999999999999987
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT 161 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 161 (267)
+..+. -...+.++.+++. ++ +++-...+.|++||.+. ..+++.++- ...|.+..++|+...+++|++|..
T Consensus 178 v~sL~------~~s~VtSlEvs~d-G~-ilTia~gssV~Fwdaks-f~~lKs~k~-P~nV~SASL~P~k~~fVaGged~~ 247 (334)
T KOG0278|consen 178 VQSLE------FNSPVTSLEVSQD-GR-ILTIAYGSSVKFWDAKS-FGLLKSYKM-PCNVESASLHPKKEFFVAGGEDFK 247 (334)
T ss_pred EEEEe------cCCCCcceeeccC-CC-EEEEecCceeEEecccc-ccceeeccC-ccccccccccCCCceEEecCcceE
Confidence 76653 2456788888864 44 45666677899999874 335555542 356889999999999999999999
Q ss_pred EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccc
Q 024451 162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK 218 (267)
Q Consensus 162 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~ 218 (267)
+..||..++.++..+. ..+.++|.++.|+|+|...++|+.||.|+||.+...+
T Consensus 248 ~~kfDy~TgeEi~~~n----kgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 248 VYKFDYNTGEEIGSYN----KGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred EEEEeccCCceeeecc----cCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 9999999998877642 2344689999999999999999999999999875443
No 97
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.95 E-value=3.4e-25 Score=166.64 Aligned_cols=248 Identities=26% Similarity=0.387 Sum_probs=181.5
Q ss_pred CCCCeEEEccCCCeEEEeecCCCCCCCCC---C--c---ccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCC
Q 024451 7 PTGQSVACGGLDSVCSIFNLNSPTDKDGN---L--P---VSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT 78 (267)
Q Consensus 7 ~~g~~l~~~~~d~~v~~w~~~~~~~~~~~---~--~---~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 78 (267)
..|+++++|+.||.+.+||++..+..+.. . . ....-.+|+..|.++.|-|-+...+.+++.|.++++||.++
T Consensus 54 tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnT 133 (397)
T KOG4283|consen 54 TEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNT 133 (397)
T ss_pred ccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeeccc
Confidence 36899999999999999999875422111 0 0 12345689999999999998888899999999999999987
Q ss_pred CeeEEEeCC---------------------------------------ccccCCccceEEEEEeCCCCeEEEEecCCCeE
Q 024451 79 GLRTSVFGG---------------------------------------EFQSGHTADVLSVSISGSNSRMFVSGSCDSTA 119 (267)
Q Consensus 79 ~~~~~~~~~---------------------------------------~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i 119 (267)
.+....|.. ...++|...|.++.|+|.+.-.+++|+.||.|
T Consensus 134 lQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~i 213 (397)
T KOG4283|consen 134 LQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAI 213 (397)
T ss_pred ceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceE
Confidence 543332210 12368999999999999999999999999999
Q ss_pred EEEeCCCcccceEEe--------------eccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecC--CC
Q 024451 120 RLWDTRVASRAVRTF--------------HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG--EN 183 (267)
Q Consensus 120 ~iwd~~~~~~~~~~~--------------~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~ 183 (267)
|+||++......+.+ .+|.+.++.++|..++.++++++.|..+++|+..+++....-+.+.- ..
T Consensus 214 rlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~ 293 (397)
T KOG4283|consen 214 RLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQT 293 (397)
T ss_pred EEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCccccccccccccccc
Confidence 999998543222222 25677899999999999999999999999999988764332211110 10
Q ss_pred CCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451 184 EIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF 260 (267)
Q Consensus 184 ~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~ 260 (267)
....+. +. +.+...++---.++.+.++++..+..+..+ ..|...|.|.++-|+=+.+.+|+.|+.|..|..
T Consensus 294 ~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l----~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 294 TSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRL----STHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred ccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEee----ecccceeeEEeecCchhhhhccccCCccccccc
Confidence 011111 22 222233333335588899988777665443 568889999999999999999999999999964
No 98
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=2.4e-25 Score=192.07 Aligned_cols=244 Identities=23% Similarity=0.311 Sum_probs=186.4
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCC--C---------CCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCe
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSP--T---------DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT 70 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~--~---------~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~ 70 (267)
|.-|+|||++||+|+.|+.|-+|..... . .....++...++.+|.+.|..+.|+|+ +.++++++.|++
T Consensus 74 CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~-~~~lvS~s~Dns 152 (942)
T KOG0973|consen 74 CVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD-DSLLVSVSLDNS 152 (942)
T ss_pred EEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCC-ccEEEEecccce
Confidence 4559999999999999999999998731 0 001123466788999999999999995 579999999999
Q ss_pred EEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeecc------ccceeEE
Q 024451 71 CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH------EGDVNTV 144 (267)
Q Consensus 71 v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~------~~~i~~~ 144 (267)
|.|||..+-....++ .+|...|.-+.|+|. +++|++-+.|++|+||.+.... ..+.+.++ ..-+..+
T Consensus 153 Viiwn~~tF~~~~vl-----~~H~s~VKGvs~DP~-Gky~ASqsdDrtikvwrt~dw~-i~k~It~pf~~~~~~T~f~Rl 225 (942)
T KOG0973|consen 153 VIIWNAKTFELLKVL-----RGHQSLVKGVSWDPI-GKYFASQSDDRTLKVWRTSDWG-IEKSITKPFEESPLTTFFLRL 225 (942)
T ss_pred EEEEccccceeeeee-----ecccccccceEECCc-cCeeeeecCCceEEEEEcccce-eeEeeccchhhCCCcceeeec
Confidence 999999887666555 579999999999974 6899999999999999865322 22223222 2236789
Q ss_pred EEecCCCEEEEee----CCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccC-------------CC----EEEEE
Q 024451 145 KFFPDGNRFGTGS----DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS-------------GR----LLFAG 203 (267)
Q Consensus 145 ~~~~~~~~l~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-------------~~----~l~~g 203 (267)
.|+|||.+|++.- .-.++.|.+-.+-+....+.. +..++..+.|+|. .+ ++|+|
T Consensus 226 SWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvG-----H~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~Avg 300 (942)
T KOG0973|consen 226 SWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVG-----HSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVG 300 (942)
T ss_pred ccCCCcCeecchhhccCCcceeEEEecCCceeeeeeec-----CCCceEEEEeChHHhccccccCCccCCCcceEEEEEe
Confidence 9999999998763 234678877655443333332 3347899999872 11 67889
Q ss_pred EeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451 204 YSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG 261 (267)
Q Consensus 204 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~ 261 (267)
+.|+.|.||.....+++.... .-....|..++|+|||..|..||.||+|.+..|.
T Consensus 301 SqDrSlSVW~T~~~RPl~vi~---~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fe 355 (942)
T KOG0973|consen 301 SQDRSLSVWNTALPRPLFVIH---NLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFE 355 (942)
T ss_pred cCCccEEEEecCCCCchhhhh---hhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcc
Confidence 999999999987776655432 2345689999999999999999999999999873
No 99
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.8e-24 Score=162.89 Aligned_cols=235 Identities=19% Similarity=0.340 Sum_probs=175.8
Q ss_pred eeCCCCCeEEEccC--CCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 4 AFSPTGQSVACGGL--DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 4 ~~~~~g~~l~~~~~--d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
+|......++.++. |.+||.-++..+ +..|.+.||+..|.++..+|-+ ..++|++.|++|++||++....
T Consensus 63 ~Fth~~~~~i~sStk~d~tIryLsl~dN-------kylRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~c 134 (311)
T KOG1446|consen 63 CFTHHSNTVIHSSTKEDDTIRYLSLHDN-------KYLRYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKC 134 (311)
T ss_pred EEecCCceEEEccCCCCCceEEEEeecC-------ceEEEcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCC
Confidence 45444444555554 889999988753 3789999999999999999976 4689999999999999997655
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCc-ccceEEee---ccccceeEEEEecCCCEEEEee
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA-SRAVRTFH---GHEGDVNTVKFFPDGNRFGTGS 157 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~-~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~ 157 (267)
...+.. ..-...+++| .+-+++++.....|++||+|.. ..+...+. +.....+.+.|+|+|++++.+.
T Consensus 135 qg~l~~-------~~~pi~AfDp-~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT 206 (311)
T KOG1446|consen 135 QGLLNL-------SGRPIAAFDP-EGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLST 206 (311)
T ss_pred ceEEec-------CCCcceeECC-CCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEe
Confidence 544421 1112344664 5667777766669999999854 22333332 3456788999999999999999
Q ss_pred CCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEE
Q 024451 158 DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCL 237 (267)
Q Consensus 158 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~ 237 (267)
..+.+.+.|--+|..+..+..+...... ....+|+|+++++++|+.||.|++|++++++.+..+. ..+.+++.++
T Consensus 207 ~~s~~~~lDAf~G~~~~tfs~~~~~~~~--~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~---~~~~~~~~~~ 281 (311)
T KOG1446|consen 207 NASFIYLLDAFDGTVKSTFSGYPNAGNL--PLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLR---GPNGGPVSCV 281 (311)
T ss_pred CCCcEEEEEccCCcEeeeEeeccCCCCc--ceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEec---CCCCCCcccc
Confidence 9999999998888766655443332221 2567899999999999999999999999988776653 3378899999
Q ss_pred EECCCCCeEEEeECCCcEEEEecC
Q 024451 238 GLSADGSALCTGSWDTNLKIWAFG 261 (267)
Q Consensus 238 ~~~p~~~~l~sgs~dg~i~~w~~~ 261 (267)
.|+|--.+++++ +..+.+|-..
T Consensus 282 ~fnP~~~mf~sa--~s~l~fw~p~ 303 (311)
T KOG1446|consen 282 RFNPRYAMFVSA--SSNLVFWLPD 303 (311)
T ss_pred ccCCceeeeeec--CceEEEEecc
Confidence 999976666655 6789999543
No 100
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=3.1e-25 Score=184.82 Aligned_cols=232 Identities=21% Similarity=0.361 Sum_probs=186.5
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
+++++.+...+++|+. +++++|+... ..+.+++.. +.+.++.|.| ++.++++|...|.+.++|+.+...
T Consensus 378 sl~vS~d~~~~~Sga~-~SikiWn~~t-------~kciRTi~~--~y~l~~~Fvp-gd~~Iv~G~k~Gel~vfdlaS~~l 446 (888)
T KOG0306|consen 378 SLCVSSDSILLASGAG-ESIKIWNRDT-------LKCIRTITC--GYILASKFVP-GDRYIVLGTKNGELQVFDLASASL 446 (888)
T ss_pred EEEeecCceeeeecCC-CcEEEEEccC-------cceeEEecc--ccEEEEEecC-CCceEEEeccCCceEEEEeehhhh
Confidence 4678888887777654 5799999864 236666543 3888999999 567999999999999999987655
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcc-------cce-----EEeeccccceeEEEEecC
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS-------RAV-----RTFHGHEGDVNTVKFFPD 149 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~-------~~~-----~~~~~~~~~i~~~~~~~~ 149 (267)
...+ .+|++.|.+++..|. +..+++|+.|.+|++||..... +.+ +.+ .-...|.|+.++||
T Consensus 447 ~Eti-----~AHdgaIWsi~~~pD-~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtL-el~ddvL~v~~Spd 519 (888)
T KOG0306|consen 447 VETI-----RAHDGAIWSISLSPD-NKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTL-ELEDDVLCVSVSPD 519 (888)
T ss_pred hhhh-----hccccceeeeeecCC-CCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEE-eccccEEEEEEcCC
Confidence 4433 479999999999875 5678999999999999864211 111 111 23467899999999
Q ss_pred CCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCC
Q 024451 150 GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNS 229 (267)
Q Consensus 150 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~ 229 (267)
+++++.+--|.+++||-+++-+-...+ .++.-+|.++..||++..+++|+.|..|++|-+.-+....++ ..
T Consensus 520 gk~LaVsLLdnTVkVyflDtlKFflsL-----YGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~----fA 590 (888)
T KOG0306|consen 520 GKLLAVSLLDNTVKVYFLDTLKFFLSL-----YGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSF----FA 590 (888)
T ss_pred CcEEEEEeccCeEEEEEecceeeeeee-----cccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhh----hc
Confidence 999999999999999999876543333 345568999999999999999999999999998877766554 47
Q ss_pred ccceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451 230 HEGRITCLGLSADGSALCTGSWDTNLKIWAF 260 (267)
Q Consensus 230 ~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~ 260 (267)
|.+.|.++.|-|....+.++|.|+.|+-||-
T Consensus 591 HdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg 621 (888)
T KOG0306|consen 591 HDDSVMSVQFLPKTHLFFTCGKDGKVKQWDG 621 (888)
T ss_pred ccCceeEEEEcccceeEEEecCcceEEeech
Confidence 9999999999999999999999999999973
No 101
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.1e-24 Score=185.06 Aligned_cols=243 Identities=19% Similarity=0.339 Sum_probs=187.8
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
.++|.|+|..|.+++.||.|++|+.....+. | +++..|...|.+++-.. .++++|+.+++|.+|.+.++..
T Consensus 18 ~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~----P--~ti~~~g~~v~~ia~~s---~~f~~~s~~~tv~~y~fps~~~ 88 (933)
T KOG1274|consen 18 LICYDPDGEFICTCGSDGDIRKWKTNSDEEE----P--ETIDISGELVSSIACYS---NHFLTGSEQNTVLRYKFPSGEE 88 (933)
T ss_pred EEEEcCCCCEEEEecCCCceEEeecCCcccC----C--chhhccCceeEEEeecc---cceEEeeccceEEEeeCCCCCc
Confidence 3689999999999999999999997654211 1 22223777888877533 4799999999999999987654
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT 161 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 161 (267)
-.++. .-.-++..++++. ++.+++.|+.|-.|++-+... ....+.+.+|.++|.++.|+|.+++||+.+-||+
T Consensus 89 ~~iL~-----Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D-~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~ 161 (933)
T KOG1274|consen 89 DTILA-----RFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDD-SSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGK 161 (933)
T ss_pred cceee-----eeeccceEEEEec-CCcEEEeecCceeEEEEeccc-cchheeecccCCceeeeeEcCCCCEEEEEecCce
Confidence 32221 2234577788875 567889999999999999865 3457788999999999999999999999999999
Q ss_pred EEEEeCCCCeeeEEEEeecCCCC---CCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEE
Q 024451 162 CRLFDIRTGHQLQVYYQQHGENE---IPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLG 238 (267)
Q Consensus 162 i~iwd~~~~~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~ 238 (267)
|++||+.++.....+......++ ...+..++|+|++..+++-..|+.|.+|+.........+. ...+...+..+.
T Consensus 162 v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr--~~~~ss~~~~~~ 239 (933)
T KOG1274|consen 162 VQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLR--DKLSSSKFSDLQ 239 (933)
T ss_pred EEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeec--ccccccceEEEE
Confidence 99999998765443322211111 2346788999998888888899999999987776554442 234555599999
Q ss_pred ECCCCCeEEEeECCCcEEEEecCc
Q 024451 239 LSADGSALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 239 ~~p~~~~l~sgs~dg~i~~w~~~~ 262 (267)
|+|+|+|||+++.||.|.||+...
T Consensus 240 wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 240 WSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred EcCCCcEEeeeccCCcEEEEeccc
Confidence 999999999999999999999764
No 102
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=1.3e-25 Score=166.03 Aligned_cols=208 Identities=24% Similarity=0.374 Sum_probs=169.1
Q ss_pred ccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeE
Q 024451 40 RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTA 119 (267)
Q Consensus 40 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i 119 (267)
+.+++|...|.+++|+-++ ..|++|+.|+++++|+++........ ...+|.+.+..++++|.+..++++++.|.+|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g-~~lasgs~dktv~v~n~e~~r~~~~~---~~~gh~~svdql~w~~~~~d~~atas~dk~i 89 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDG-TKLASGSFDKTVSVWNLERDRFRKEL---VYRGHTDSVDQLCWDPKHPDLFATASGDKTI 89 (313)
T ss_pred HHhhhhhhcceEEEEcccC-ceeeecccCCceEEEEecchhhhhhh---cccCCCcchhhheeCCCCCcceEEecCCceE
Confidence 6678999999999999875 57999999999999999866332222 2357999999999999999999999999999
Q ss_pred EEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCE
Q 024451 120 RLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRL 199 (267)
Q Consensus 120 ~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 199 (267)
++||.+..+ +...... .+.=.-+.|+|+|++++.+..|..|.+.|.++.+...... ....+.-++|+-++.+
T Consensus 90 r~wd~r~~k-~~~~i~~-~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~------~~~e~ne~~w~~~nd~ 161 (313)
T KOG1407|consen 90 RIWDIRSGK-CTARIET-KGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ------FKFEVNEISWNNSNDL 161 (313)
T ss_pred EEEEeccCc-EEEEeec-cCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc------ccceeeeeeecCCCCE
Confidence 999998654 4444432 3333568899999999999999999999998766543221 1234678889988888
Q ss_pred EEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCce
Q 024451 200 LFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGY 263 (267)
Q Consensus 200 l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~ 263 (267)
++.....|.|.|......+.+..+ +.|.....|++|+|+|+|||+||.|-.+.|||+..+
T Consensus 162 Fflt~GlG~v~ILsypsLkpv~si----~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL 221 (313)
T KOG1407|consen 162 FFLTNGLGCVEILSYPSLKPVQSI----KAHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL 221 (313)
T ss_pred EEEecCCceEEEEecccccccccc----ccCCcceEEEEECCCCceEeeccccceeeccChhHh
Confidence 888888899999987777766554 679999999999999999999999999999997543
No 103
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2.9e-25 Score=182.32 Aligned_cols=241 Identities=23% Similarity=0.425 Sum_probs=184.6
Q ss_pred eeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee--
Q 024451 4 AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR-- 81 (267)
Q Consensus 4 ~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~-- 81 (267)
++..+|+.|++++.|-+|++|+..... .-+..++..|+++|.|+++...+..++||||.|+.|.+||++++..
T Consensus 80 iL~~~~~tlIS~SsDtTVK~W~~~~~~-----~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l 154 (735)
T KOG0308|consen 80 ILCGNGKTLISASSDTTVKVWNAHKDN-----TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATL 154 (735)
T ss_pred HhhcCCCceEEecCCceEEEeecccCc-----chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhh
Confidence 445678899999999999999986532 2367788999999999999555567899999999999999997732
Q ss_pred EEEeC----CccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEee
Q 024451 82 TSVFG----GEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS 157 (267)
Q Consensus 82 ~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 157 (267)
...+. .....++...|.+++.++ ++.++++|+..+.+++||.++. +.+..++||...|..+..+++|..+++++
T Consensus 155 ~~s~n~~t~~sl~sG~k~siYSLA~N~-t~t~ivsGgtek~lr~wDprt~-~kimkLrGHTdNVr~ll~~dDGt~~ls~s 232 (735)
T KOG0308|consen 155 VASFNNVTVNSLGSGPKDSIYSLAMNQ-TGTIIVSGGTEKDLRLWDPRTC-KKIMKLRGHTDNVRVLLVNDDGTRLLSAS 232 (735)
T ss_pred hhhccccccccCCCCCccceeeeecCC-cceEEEecCcccceEEeccccc-cceeeeeccccceEEEEEcCCCCeEeecC
Confidence 11111 112237888999998875 4578999999999999999864 45667889999999999999999999999
Q ss_pred CCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEE
Q 024451 158 DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCL 237 (267)
Q Consensus 158 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~ 237 (267)
.||+|++||+...+++..+.. |. ..+.++..+|+=..+.+|+.||.|+.=|++.......+ ..-+.+|..+
T Consensus 233 SDgtIrlWdLgqQrCl~T~~v-H~----e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tli----ck~daPv~~l 303 (735)
T KOG0308|consen 233 SDGTIRLWDLGQQRCLATYIV-HK----EGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLI----CKEDAPVLKL 303 (735)
T ss_pred CCceEEeeeccccceeeeEEe-cc----CceEEEeeCCCcceEEecCCCCcEEecccCCchhheEe----ecCCCchhhh
Confidence 999999999998888776533 22 24899998999999999999999999998774322111 1123355555
Q ss_pred EECCCCCeEEEeECCCcEEEEec
Q 024451 238 GLSADGSALCTGSWDTNLKIWAF 260 (267)
Q Consensus 238 ~~~p~~~~l~sgs~dg~i~~w~~ 260 (267)
..+.+.+-+=+++.|+.|+=|..
T Consensus 304 ~~~~~~~~~WvtTtds~I~rW~~ 326 (735)
T KOG0308|consen 304 HLHEHDNSVWVTTTDSSIKRWKL 326 (735)
T ss_pred hhccccCCceeeeccccceecCC
Confidence 55533333344667888888864
No 104
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.4e-24 Score=163.68 Aligned_cols=247 Identities=17% Similarity=0.311 Sum_probs=175.7
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccc--cccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCC
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSR--MLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG 79 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~ 79 (267)
+++|+.||+.|+|++.|++|++|++..-.+++-. ++| ...+| -+.|.|.|+-...+++.-...++++|.+..+
T Consensus 91 ~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr--~~R~nve~dh---pT~V~FapDc~s~vv~~~~g~~l~vyk~~K~ 165 (420)
T KOG2096|consen 91 DVAFSSDGKKLATISGDRSIRLWDVRDFENKEHR--CIRQNVEYDH---PTRVVFAPDCKSVVVSVKRGNKLCVYKLVKK 165 (420)
T ss_pred eeEEcCCCceeEEEeCCceEEEEecchhhhhhhh--HhhccccCCC---ceEEEECCCcceEEEEEccCCEEEEEEeeec
Confidence 5789999999999999999999998764332221 112 12234 4567899988888888888889999987532
Q ss_pred ee---EE-Ee---CCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCE
Q 024451 80 LR---TS-VF---GGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNR 152 (267)
Q Consensus 80 ~~---~~-~~---~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 152 (267)
.. .. .. ..++...|+..+.++-.. .+..++++++.|..|.+|+++ .+.+..+......-+..+.+|+|++
T Consensus 166 ~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA-~~~k~imsas~dt~i~lw~lk--Gq~L~~idtnq~~n~~aavSP~GRF 242 (420)
T KOG2096|consen 166 TDGSGSHHFVHIDNLEFERKHQVDIINIGIA-GNAKYIMSASLDTKICLWDLK--GQLLQSIDTNQSSNYDAAVSPDGRF 242 (420)
T ss_pred ccCCCCcccccccccccchhcccceEEEeec-CCceEEEEecCCCcEEEEecC--CceeeeeccccccccceeeCCCCcE
Confidence 11 00 00 112334566666666554 467889999999999999997 3456666655566678899999999
Q ss_pred EEEeeCCCcEEEEeCCCCe-----eeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccce-------e
Q 024451 153 FGTGSDDGTCRLFDIRTGH-----QLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV-------V 220 (267)
Q Consensus 153 l~~~~~d~~i~iwd~~~~~-----~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~-------~ 220 (267)
+++++----|++|.+--++ +....+ ...++...|.+++|+++...+++.+.||..++||...... +
T Consensus 243 ia~~gFTpDVkVwE~~f~kdG~fqev~rvf--~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~L 320 (420)
T KOG2096|consen 243 IAVSGFTPDVKVWEPIFTKDGTFQEVKRVF--SLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKIL 320 (420)
T ss_pred EEEecCCCCceEEEEEeccCcchhhhhhhh--eeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHh
Confidence 9999988889999964322 111111 1234556799999999999999999999999999632110 0
Q ss_pred ee------------------------------------------cccccCCccceEEEEEECCCCCeEEEeECCCcEEEE
Q 024451 221 LN------------------------------------------LGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 258 (267)
Q Consensus 221 ~~------------------------------------------~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w 258 (267)
.. ...+...|++.|.+++|+|+|+++|+++ |+.+++.
T Consensus 321 k~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~ 399 (420)
T KOG2096|consen 321 KEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVI 399 (420)
T ss_pred hcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeee
Confidence 00 0012234888999999999999999987 7888887
Q ss_pred e
Q 024451 259 A 259 (267)
Q Consensus 259 ~ 259 (267)
.
T Consensus 400 ~ 400 (420)
T KOG2096|consen 400 R 400 (420)
T ss_pred c
Confidence 4
No 105
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=1.1e-24 Score=180.02 Aligned_cols=222 Identities=26% Similarity=0.423 Sum_probs=174.8
Q ss_pred eeC-CCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeE
Q 024451 4 AFS-PTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT 82 (267)
Q Consensus 4 ~~~-~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 82 (267)
+|. .++-.|++|++|.++.+|.+.... +..+++||+..|-|++...++ .++|||+|.++++|-......
T Consensus 65 ~y~e~~~~~l~~g~~D~~i~v~~~~~~~-------P~~~LkgH~snVC~ls~~~~~--~~iSgSWD~TakvW~~~~l~~- 134 (745)
T KOG0301|consen 65 CYAESDKGRLVVGGMDTTIIVFKLSQAE-------PLYTLKGHKSNVCSLSIGEDG--TLISGSWDSTAKVWRIGELVY- 134 (745)
T ss_pred eeccccCcceEeecccceEEEEecCCCC-------chhhhhccccceeeeecCCcC--ceEecccccceEEecchhhhc-
Confidence 444 355569999999999999986543 567899999999998876543 489999999999998753221
Q ss_pred EEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcE
Q 024451 83 SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTC 162 (267)
Q Consensus 83 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i 162 (267)
...+|+..|..+...+.+ .++||+.|++||+|.- .+..+.+.+|++.|..+++-++ ..|++|+.||.|
T Consensus 135 ------~l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~---~~~l~tf~gHtD~VRgL~vl~~-~~flScsNDg~I 202 (745)
T KOG0301|consen 135 ------SLQGHTASVWAVASLPEN--TYVTGSADKTIKLWKG---GTLLKTFSGHTDCVRGLAVLDD-SHFLSCSNDGSI 202 (745)
T ss_pred ------ccCCcchheeeeeecCCC--cEEeccCcceeeeccC---CchhhhhccchhheeeeEEecC-CCeEeecCCceE
Confidence 136899999999888653 7899999999999964 4578889999999999999875 469999999999
Q ss_pred EEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccc-eEEEEEECC
Q 024451 163 RLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEG-RITCLGLSA 241 (267)
Q Consensus 163 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~v~~~~~~p 241 (267)
++|++ ++..+..... +...+.+++...++..++++++|+.++||+.. +....+ .|.. .|+++++-+
T Consensus 203 r~w~~-~ge~l~~~~g-----htn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I-----~lPttsiWsa~~L~ 269 (745)
T KOG0301|consen 203 RLWDL-DGEVLLEMHG-----HTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVI-----TLPTTSIWSAKVLL 269 (745)
T ss_pred EEEec-cCceeeeeec-----cceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEE-----ecCccceEEEEEee
Confidence 99999 4555544322 33468888888899999999999999999965 333322 2332 689999998
Q ss_pred CCCeEEEeECCCcEEEEecC
Q 024451 242 DGSALCTGSWDTNLKIWAFG 261 (267)
Q Consensus 242 ~~~~l~sgs~dg~i~~w~~~ 261 (267)
+|.+ ++|+.||.||||...
T Consensus 270 NgDI-vvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 270 NGDI-VVGGSDGRVRVFTVD 288 (745)
T ss_pred CCCE-EEeccCceEEEEEec
Confidence 8876 557789999999743
No 106
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.94 E-value=1.1e-24 Score=178.69 Aligned_cols=254 Identities=21% Similarity=0.306 Sum_probs=179.6
Q ss_pred ceeeCC---CCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCC
Q 024451 2 TCAFSP---TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT 78 (267)
Q Consensus 2 ~~~~~~---~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 78 (267)
++.|++ ....|+.+.+||.|.++|........ +.........|.+.|+.+.|.| ++..|++++.|.+++.||+.+
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~-ee~~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~ 131 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRL-EERQLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKT 131 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcch-hhhhhcccccccceeEeeccCC-CceeEEEccCCceeeeeeecc
Confidence 345653 33678899999999999986532110 0111244568999999999999 677899999999999999987
Q ss_pred CeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCccc-------------------c-------eE
Q 024451 79 GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR-------------------A-------VR 132 (267)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~-------------------~-------~~ 132 (267)
...... ....+|...+.+++|.+.+...|++|+.||.|.|||++.... + +.
T Consensus 132 s~l~G~---~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~ 208 (720)
T KOG0321|consen 132 SRLVGG---RLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIR 208 (720)
T ss_pred ceeecc---eeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccc
Confidence 654332 234589999999999999999999999999999999874320 0 11
Q ss_pred EeeccccceeE---EEEecCCCEEEEeeC-CCcEEEEeCCCCeeeEEEEe------ecCCCCCCcEEEEEEccCCCEEEE
Q 024451 133 TFHGHEGDVNT---VKFFPDGNRFGTGSD-DGTCRLFDIRTGHQLQVYYQ------QHGENEIPHVTSIAFSISGRLLFA 202 (267)
Q Consensus 133 ~~~~~~~~i~~---~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~------~~~~~~~~~v~~~~~s~~~~~l~~ 202 (267)
.-+++...|.+ +.+..|...||++|. |+.|+|||++..+..-.... .......-.+.+++.+..|.+|++
T Consensus 209 k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~A 288 (720)
T KOG0321|consen 209 KWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFA 288 (720)
T ss_pred ccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEE
Confidence 12344555666 777788999999987 99999999997653311100 000111234678888888999999
Q ss_pred EEeCCeEEEEeCCccceeeecccccCCc--cceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451 203 GYSNGDCYVWDTLLAKVVLNLGSLQNSH--EGRITCLGLSADGSALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 203 g~~dg~i~i~d~~~~~~~~~~~~~~~~~--~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~ 262 (267)
.+.|+.|++|++.....-..... ..+ ..--..-..+|++.+|++|+.|....+|.+..
T Consensus 289 sCtD~sIy~ynm~s~s~sP~~~~--sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~ 348 (720)
T KOG0321|consen 289 SCTDNSIYFYNMRSLSISPVAEF--SGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSS 348 (720)
T ss_pred EecCCcEEEEeccccCcCchhhc--cCcccceeeeeeecCCCCceEeccCCCcceeeeeecC
Confidence 99999999999865432111100 111 11122335689999999999999999998754
No 107
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.94 E-value=2e-25 Score=178.62 Aligned_cols=237 Identities=23% Similarity=0.407 Sum_probs=182.1
Q ss_pred eeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEE
Q 024451 4 AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS 83 (267)
Q Consensus 4 ~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~ 83 (267)
..+...+++.|||..+ |+|||+..+.+......+ .. ....++|.+|..+|++ +.|++|++-.++.|||+.......
T Consensus 426 tIS~~trhVyTgGkgc-VKVWdis~pg~k~PvsqL-dc-l~rdnyiRSckL~pdg-rtLivGGeastlsiWDLAapTpri 501 (705)
T KOG0639|consen 426 TISNPTRHVYTGGKGC-VKVWDISQPGNKSPVSQL-DC-LNRDNYIRSCKLLPDG-RTLIVGGEASTLSIWDLAAPTPRI 501 (705)
T ss_pred EecCCcceeEecCCCe-EEEeeccCCCCCCccccc-cc-cCcccceeeeEecCCC-ceEEeccccceeeeeeccCCCcch
Confidence 3567788999998765 999999876433211111 11 1245789999999976 578899999999999998764321
Q ss_pred EeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEE
Q 024451 84 VFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCR 163 (267)
Q Consensus 84 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~ 163 (267)
..+.. .....+..+++++ +.++..++..||.|.|||+.. ...++++++|.+.+.|+..+++|..|-+|+-|.+||
T Consensus 502 --kaelt-ssapaCyALa~sp-DakvcFsccsdGnI~vwDLhn-q~~VrqfqGhtDGascIdis~dGtklWTGGlDntvR 576 (705)
T KOG0639|consen 502 --KAELT-SSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHN-QTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVR 576 (705)
T ss_pred --hhhcC-CcchhhhhhhcCC-ccceeeeeccCCcEEEEEccc-ceeeecccCCCCCceeEEecCCCceeecCCCcccee
Confidence 11211 1223455677775 567888999999999999974 457899999999999999999999999999999999
Q ss_pred EEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCC
Q 024451 164 LFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADG 243 (267)
Q Consensus 164 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 243 (267)
-||++.+.++.. +.. ...|.++..+|++.+++.|-+++.+.+......+... ...|++.|.++.|.+-|
T Consensus 577 cWDlregrqlqq----hdF--~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyq-----lhlheScVLSlKFa~cG 645 (705)
T KOG0639|consen 577 CWDLREGRQLQQ----HDF--SSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQ-----LHLHESCVLSLKFAYCG 645 (705)
T ss_pred ehhhhhhhhhhh----hhh--hhhheecccCCCccceeeecccCcEEEEecCCcccee-----ecccccEEEEEEecccC
Confidence 999998876532 221 2358899999999999999999999888754333221 13589999999999999
Q ss_pred CeEEEeECCCcEEEEec
Q 024451 244 SALCTGSWDTNLKIWAF 260 (267)
Q Consensus 244 ~~l~sgs~dg~i~~w~~ 260 (267)
+++++.+.|..+..|..
T Consensus 646 kwfvStGkDnlLnawrt 662 (705)
T KOG0639|consen 646 KWFVSTGKDNLLNAWRT 662 (705)
T ss_pred ceeeecCchhhhhhccC
Confidence 99999999999999963
No 108
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=3.1e-25 Score=168.55 Aligned_cols=237 Identities=23% Similarity=0.347 Sum_probs=184.6
Q ss_pred CCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeC------CCC---
Q 024451 9 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI------TTG--- 79 (267)
Q Consensus 9 g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~------~~~--- 79 (267)
-..+.+++.|.+.++|.++.. .+...+.||.+.|.|+.|++++ .++++++.|++-.||.. .+.
T Consensus 160 qpi~gtASADhTA~iWs~Esg-------~CL~~Y~GH~GSVNsikfh~s~-~L~lTaSGD~taHIW~~av~~~vP~~~a~ 231 (481)
T KOG0300|consen 160 QPICGTASADHTARIWSLESG-------ACLATYTGHTGSVNSIKFHNSG-LLLLTASGDETAHIWKAAVNWEVPSNNAP 231 (481)
T ss_pred CcceeecccccceeEEeeccc-------cceeeecccccceeeEEecccc-ceEEEccCCcchHHHHHhhcCcCCCCCCC
Confidence 357899999999999999763 3778899999999999999975 58899999999999962 110
Q ss_pred -----eeE--------E-------------EeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEE
Q 024451 80 -----LRT--------S-------------VFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRT 133 (267)
Q Consensus 80 -----~~~--------~-------------~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~ 133 (267)
+.. . ..+.....+|...+.+..|.. +++.++++++|.+..+||++. ..++..
T Consensus 232 ~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTaSWDRTAnlwDVEt-ge~v~~ 309 (481)
T KOG0300|consen 232 SDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA-GGQQMVTASWDRTANLWDVET-GEVVNI 309 (481)
T ss_pred CCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc-Ccceeeeeeccccceeeeecc-Cceecc
Confidence 000 0 000011246777787777774 466789999999999999985 457888
Q ss_pred eeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEe
Q 024451 134 FHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD 213 (267)
Q Consensus 134 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d 213 (267)
+.+|....+-+.-+|..+++++.+.|.+.++||++..-.....++.| ...|+++.|..+ ..+++|+.|..|++||
T Consensus 310 LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGH----tdtVTS~vF~~d-d~vVSgSDDrTvKvWd 384 (481)
T KOG0300|consen 310 LTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGH----TDTVTSVVFNTD-DRVVSGSDDRTVKVWD 384 (481)
T ss_pred ccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeeccc----ccceeEEEEecC-CceeecCCCceEEEee
Confidence 99999999999999999999999999999999998654434444433 346999999865 5678999999999999
Q ss_pred CCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCceE
Q 024451 214 TLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGYR 264 (267)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~~ 264 (267)
++.-+.+.... ...++++-++++..+.++|.--.+..|++||++|-+
T Consensus 385 LrNMRsplATI----RtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~R 431 (481)
T KOG0300|consen 385 LRNMRSPLATI----RTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNR 431 (481)
T ss_pred eccccCcceee----ecCCccceeEeecCCceEEeccCCceEEEEecCCCc
Confidence 87655433221 235688999999988899998888899999997743
No 109
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=7e-24 Score=160.26 Aligned_cols=251 Identities=16% Similarity=0.252 Sum_probs=179.1
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEe-cCCCeeEEEeeCCCeEEEEeCCCC-
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYV-PDEDTHLITSSGDQTCVLWDITTG- 79 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~~l~s~~~d~~v~iwd~~~~- 79 (267)
+..|.+-|+++++++.|.+++|||...+ .+...+....+.|.+.|..+.|. |.=++.+|+++.|++++||.-...
T Consensus 18 dVs~D~~GRRmAtCSsDq~vkI~d~~~~---s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~ 94 (361)
T KOG2445|consen 18 DVSFDFYGRRMATCSSDQTVKIWDSTSD---SGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKS 94 (361)
T ss_pred eeeecccCceeeeccCCCcEEEEeccCC---CCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccc
Confidence 4568899999999999999999997543 34566777889999999999996 444678999999999999975211
Q ss_pred ----eeEEEeCCccccCCccceEEEEEeCCC-CeEEEEecCCCeEEEEeCCCccc-----ceEEee-------cccccee
Q 024451 80 ----LRTSVFGGEFQSGHTADVLSVSISGSN-SRMFVSGSCDSTARLWDTRVASR-----AVRTFH-------GHEGDVN 142 (267)
Q Consensus 80 ----~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~s~~~d~~i~iwd~~~~~~-----~~~~~~-------~~~~~i~ 142 (267)
.+..... .........+..+.|.|.. +-++++++.||.+|||+...... ....++ .+..+..
T Consensus 95 ~~~~~~~Wv~~-ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~ 173 (361)
T KOG2445|consen 95 EEAHGRRWVRR-TTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCF 173 (361)
T ss_pred cccccceeEEE-EEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcce
Confidence 0000000 1123456778999998764 45678999999999998653211 111111 3556788
Q ss_pred EEEEecC---CCEEEEeeCC-----CcEEEEeCCCCe-eeEEEEeecCCCCCCcEEEEEEccCC----CEEEEEEeCCeE
Q 024451 143 TVKFFPD---GNRFGTGSDD-----GTCRLFDIRTGH-QLQVYYQQHGENEIPHVTSIAFSISG----RLLFAGYSNGDC 209 (267)
Q Consensus 143 ~~~~~~~---~~~l~~~~~d-----~~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~----~~l~~g~~dg~i 209 (267)
|+.|+|. ..+||.|+.+ +.+.||....+. .-... .....+..+|..++|+|+- ..||+++.|| |
T Consensus 174 CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kv--a~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v 250 (361)
T KOG2445|consen 174 CVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKV--AELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-V 250 (361)
T ss_pred EEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeee--hhcCCCCCcceeeeeccccCCceeeEEEeecCc-E
Confidence 9999874 4578887765 478899865443 11111 1223455689999999973 4789999999 9
Q ss_pred EEEeCCccc-----------------eeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451 210 YVWDTLLAK-----------------VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF 260 (267)
Q Consensus 210 ~i~d~~~~~-----------------~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~ 260 (267)
+||.+.... .+..+ .....|++.|+.+.|+-.|..|++.+.||.||+|..
T Consensus 251 ~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~v-s~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 251 RIFKVKVARSAIEEEEVLAPDLMTDLPVEKV-SELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred EEEEEeeccchhhhhcccCCCCccccceEEe-eeccCCCCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence 999976311 01111 112569999999999999999999999999999963
No 110
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.9e-25 Score=186.61 Aligned_cols=247 Identities=17% Similarity=0.286 Sum_probs=179.6
Q ss_pred eeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCccc-ccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVS-RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
++.+++-..++.+|.. .+++|...+...... +... +.-..-...+..|.|..-.+++||+++..|.|.+||+....+
T Consensus 45 Is~nr~~~qiv~AGrs-~lklyai~~~~~~~~-~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~r 122 (839)
T KOG0269|consen 45 ISVNRDINQIVVAGRS-LLKLYAINPNDFSEK-CNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKSIR 122 (839)
T ss_pred EeecCCcceeEEeccc-ceeeEeeCcccCCcc-eeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCcccc
Confidence 4566788889998876 789998765432211 1111 111111233445778765567999999999999999976221
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEec-CCCEEEEeeCCC
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDG 160 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~ 160 (267)
...+ ....-|+..+++++|++....++++|+.||+||.||++.. +....+.+....|..+.|+| .+++|+++.+.|
T Consensus 123 nk~l--~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~-~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG 199 (839)
T KOG0269|consen 123 NKLL--TVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSK-KSKSTFRSNSESIRDVKFSPGYGNKFASIHDSG 199 (839)
T ss_pred chhh--hHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecc-cccccccccchhhhceeeccCCCceEEEecCCc
Confidence 1111 1124699999999999988899999999999999999853 34555666667899999999 578999999999
Q ss_pred cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEEC
Q 024451 161 TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS 240 (267)
Q Consensus 161 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~ 240 (267)
.+++||++....-...+ ..+.++|.++.|+|++.+||+|+.|+.++|||+...+.-... . -....+|.+++|-
T Consensus 200 ~lqlWDlRqp~r~~~k~----~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~-t--InTiapv~rVkWR 272 (839)
T KOG0269|consen 200 YLQLWDLRQPDRCEKKL----TAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKH-T--INTIAPVGRVKWR 272 (839)
T ss_pred eEEEeeccCchhHHHHh----hcccCceEEEeecCCCceeeecCCCccEEEEeccCCCcccee-E--Eeecceeeeeeec
Confidence 99999998754332222 234468999999999999999999999999998754432110 1 1234689999999
Q ss_pred CCCC-eEEEeEC--CCcEEEEecC
Q 024451 241 ADGS-ALCTGSW--DTNLKIWAFG 261 (267)
Q Consensus 241 p~~~-~l~sgs~--dg~i~~w~~~ 261 (267)
|... +||+++. |-.|.|||+.
T Consensus 273 P~~~~hLAtcsmv~dtsV~VWDvr 296 (839)
T KOG0269|consen 273 PARSYHLATCSMVVDTSVHVWDVR 296 (839)
T ss_pred cCccchhhhhhccccceEEEEeec
Confidence 9765 5777665 8889999964
No 111
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.8e-23 Score=165.65 Aligned_cols=245 Identities=18% Similarity=0.337 Sum_probs=184.5
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
++.|+|....|+++|.|+++++|.++...+ +....+.--+.+|.++.|.|++...+++++....+..||+.+.+.
T Consensus 218 sv~FHp~~plllvaG~d~~lrifqvDGk~N-----~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 218 SVQFHPTAPLLLVAGLDGTLRIFQVDGKVN-----PKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred EEEecCCCceEEEecCCCcEEEEEecCccC-----hhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 578999999999999999999999976443 233444445688999999999887899999999999999987653
Q ss_pred EEEeCCccccCC-ccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCC
Q 024451 82 TSVFGGEFQSGH-TADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG 160 (267)
Q Consensus 82 ~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~ 160 (267)
...-. ..++ +..+....+++ .+++++..|..|.|.+.-..+ ...+..++ -++.|..+.|+.+++.+++++.+|
T Consensus 293 ~k~~~---~~g~e~~~~e~FeVSh-d~~fia~~G~~G~I~lLhakT-~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~G 366 (514)
T KOG2055|consen 293 TKLKP---PYGVEEKSMERFEVSH-DSNFIAIAGNNGHIHLLHAKT-KELITSFK-IEGVVSDFTFSSDSKELLASGGTG 366 (514)
T ss_pred ccccC---CCCcccchhheeEecC-CCCeEEEcccCceEEeehhhh-hhhhheee-eccEEeeEEEecCCcEEEEEcCCc
Confidence 33211 1223 23455666775 456889999999999987653 34555554 357799999999999999999999
Q ss_pred cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCc------cceeeec-----------
Q 024451 161 TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL------AKVVLNL----------- 223 (267)
Q Consensus 161 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~------~~~~~~~----------- 223 (267)
.|.+||++...++..+...... .=+++|.|+++.++|+|+..|.|.|||... ++++..+
T Consensus 367 eV~v~nl~~~~~~~rf~D~G~v----~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~ 442 (514)
T KOG2055|consen 367 EVYVWNLRQNSCLHRFVDDGSV----HGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQ 442 (514)
T ss_pred eEEEEecCCcceEEEEeecCcc----ceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeee
Confidence 9999999988776665443221 247888899999999999999999999532 1111000
Q ss_pred ------------------------------ccccC--CccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451 224 ------------------------------GSLQN--SHEGRITCLGLSADGSALCTGSWDTNLKIWAFG 261 (267)
Q Consensus 224 ------------------------------~~~~~--~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~ 261 (267)
..++. .--+.|+|++|+|++.+||.|-.+|.+.+|.+.
T Consensus 443 Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 443 FNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 00100 122468999999999999999999999999864
No 112
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=3.3e-24 Score=169.97 Aligned_cols=228 Identities=19% Similarity=0.299 Sum_probs=173.2
Q ss_pred CCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccc
Q 024451 17 LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTAD 96 (267)
Q Consensus 17 ~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 96 (267)
.-..+.+|.+..+..-. ... --.++|.|++-+|.+ .+|+.|+..+.|++|.+.+|....++ .+|-..
T Consensus 59 ~rp~l~vw~i~k~~~~~----q~~---v~Pg~v~al~s~n~G-~~l~ag~i~g~lYlWelssG~LL~v~-----~aHYQ~ 125 (476)
T KOG0646|consen 59 KRPLLHVWEILKKDQVV----QYI---VLPGPVHALASSNLG-YFLLAGTISGNLYLWELSSGILLNVL-----SAHYQS 125 (476)
T ss_pred cCccccccccCchhhhh----hhc---ccccceeeeecCCCc-eEEEeecccCcEEEEEeccccHHHHH-----Hhhccc
Confidence 34466777765432110 011 124678999988865 57777779999999999999876655 467788
Q ss_pred eEEEEEeCCCCeEEEEecCCCeEEEEeCCC--------cccceEEeeccccceeEEEEecC--CCEEEEeeCCCcEEEEe
Q 024451 97 VLSVSISGSNSRMFVSGSCDSTARLWDTRV--------ASRAVRTFHGHEGDVNTVKFFPD--GNRFGTGSDDGTCRLFD 166 (267)
Q Consensus 97 i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~--------~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~iwd 166 (267)
|+++.|+. ++.+|+||+.||.|.+|++-. ..++...+..|.-+|+.+...+. ...++++|.|.++|+||
T Consensus 126 ITcL~fs~-dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wd 204 (476)
T KOG0646|consen 126 ITCLKFSD-DGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWD 204 (476)
T ss_pred eeEEEEeC-CCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEE
Confidence 99999985 677899999999999997521 23467788899999999887654 46899999999999999
Q ss_pred CCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCcccee-----------ee-cccccCCccc--
Q 024451 167 IRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVV-----------LN-LGSLQNSHEG-- 232 (267)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~-----------~~-~~~~~~~~~~-- 232 (267)
+..+..+..+... ..+.+++.+|.++.+.+|+++|.|.+.++...... .+ ......+|..
T Consensus 205 lS~g~LLlti~fp------~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~ 278 (476)
T KOG0646|consen 205 LSLGVLLLTITFP------SSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENES 278 (476)
T ss_pred eccceeeEEEecC------CcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCc
Confidence 9998776554322 25899999999999999999999999886432200 00 0011235666
Q ss_pred eEEEEEECCCCCeEEEeECCCcEEEEecCceE
Q 024451 233 RITCLGLSADGSALCTGSWDTNLKIWAFGGYR 264 (267)
Q Consensus 233 ~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~~ 264 (267)
+|+|++++-||..|++|+.||.+.||++..+|
T Consensus 279 ~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q 310 (476)
T KOG0646|consen 279 AITCLAISTDGTLLLSGDEDGKVCVWDIYSKQ 310 (476)
T ss_pred ceeEEEEecCccEEEeeCCCCCEEEEecchHH
Confidence 99999999999999999999999999987665
No 113
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.93 E-value=2.4e-24 Score=166.70 Aligned_cols=244 Identities=21% Similarity=0.306 Sum_probs=180.0
Q ss_pred CCCeEEEccCCCeEEEeecCCCC---------CCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCC
Q 024451 8 TGQSVACGGLDSVCSIFNLNSPT---------DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT 78 (267)
Q Consensus 8 ~g~~l~~~~~d~~v~~w~~~~~~---------~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 78 (267)
+..+.++=+..|.|.||++.... .+........++.+|++.=+.+.|+|-....|+||..-+.|++|...+
T Consensus 164 ~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~ 243 (440)
T KOG0302|consen 164 NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPST 243 (440)
T ss_pred CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeecc
Confidence 45667777889999999986531 112233456678899999999999997666788888889999999887
Q ss_pred CeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcc-cceEEeeccccceeEEEEecCCCEEEEee
Q 024451 79 GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS-RAVRTFHGHEGDVNTVKFFPDGNRFGTGS 157 (267)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 157 (267)
+.-. +...-..+|+..|-.+.|+|....+|++|+.||+|+|||+|... +.....++|++.|+-+.|+..-.+||+|+
T Consensus 244 g~W~--vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~ 321 (440)
T KOG0302|consen 244 GSWK--VDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGG 321 (440)
T ss_pred Ccee--ecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecC
Confidence 5321 22222346999999999999999999999999999999998652 33445589999999999999878999999
Q ss_pred CCCcEEEEeCCCCe---eeEEEEeecCCCCCCcEEEEEEccCC-CEEEEEEeCCeEEEEeCCccce--------eeec--
Q 024451 158 DDGTCRLFDIRTGH---QLQVYYQQHGENEIPHVTSIAFSISG-RLLFAGYSNGDCYVWDTLLAKV--------VLNL-- 223 (267)
Q Consensus 158 ~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~g~~dg~i~i~d~~~~~~--------~~~~-- 223 (267)
.||+++|||++.-+ .+..+ +. +..+|+++.|+|.. ..|++++.|.+|.+||+...+- ...+
T Consensus 322 DdGt~~iwDLR~~~~~~pVA~f-k~----Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~d 396 (440)
T KOG0302|consen 322 DDGTLSIWDLRQFKSGQPVATF-KY----HKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQD 396 (440)
T ss_pred CCceEEEEEhhhccCCCcceeE-Ee----ccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhc
Confidence 99999999998643 22333 22 23579999999875 5778888999999999743221 0000
Q ss_pred --ccccCCc--cceEEEEEECCC-CCeEEEeECCCcEEEE
Q 024451 224 --GSLQNSH--EGRITCLGLSAD-GSALCTGSWDTNLKIW 258 (267)
Q Consensus 224 --~~~~~~~--~~~v~~~~~~p~-~~~l~sgs~dg~i~~w 258 (267)
..+...| ...+..+.|++. ..+|++.+.||--.+.
T Consensus 397 lPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnVfk 436 (440)
T KOG0302|consen 397 LPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNVFK 436 (440)
T ss_pred CCceeEEEecchhHhhhheeccCCCCeEEEecccceeEEE
Confidence 0011224 346788999975 4477888888754433
No 114
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=2.7e-24 Score=177.76 Aligned_cols=225 Identities=22% Similarity=0.425 Sum_probs=178.2
Q ss_pred CCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEE-EEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeC
Q 024451 8 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSC-CQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFG 86 (267)
Q Consensus 8 ~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~ 86 (267)
++..++++|.||++++|+-.... .-....+.+|.+.|.+ +.+.+.+...+++|+.|.++.+|...+..+..++
T Consensus 24 ~~~~i~s~sRd~t~~vw~~~~~~-----~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~L- 97 (745)
T KOG0301|consen 24 DGVCIISGSRDGTVKVWAKKGKQ-----YLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTL- 97 (745)
T ss_pred CCeEEeecCCCCceeeeeccCcc-----cccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhh-
Confidence 45579999999999999854321 1122456788888877 8887655556999999999999999887766555
Q ss_pred CccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEe
Q 024451 87 GEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFD 166 (267)
Q Consensus 87 ~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd 166 (267)
.+|+..|.++..... ..+++|++|.++++|-.. .....+++|+..|..+.+-|.+ .++|||.|++|++|.
T Consensus 98 ----kgH~snVC~ls~~~~--~~~iSgSWD~TakvW~~~---~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk 167 (745)
T KOG0301|consen 98 ----KGHKSNVCSLSIGED--GTLISGSWDSTAKVWRIG---ELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWK 167 (745)
T ss_pred ----hccccceeeeecCCc--CceEecccccceEEecch---hhhcccCCcchheeeeeecCCC-cEEeccCcceeeecc
Confidence 589999999987643 237999999999999653 3556689999999999999987 899999999999997
Q ss_pred CCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeE
Q 024451 167 IRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSAL 246 (267)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l 246 (267)
- ++.+..+.. +...|..+++-+++ .++++++||.|++|++ .++.+..+ .+|..-|.+++..+++..+
T Consensus 168 ~--~~~l~tf~g-----HtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~----~ghtn~vYsis~~~~~~~I 234 (745)
T KOG0301|consen 168 G--GTLLKTFSG-----HTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEM----HGHTNFVYSISMALSDGLI 234 (745)
T ss_pred C--Cchhhhhcc-----chhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeee----eccceEEEEEEecCCCCeE
Confidence 5 344444432 34579999987664 4666779999999998 56666555 4788999999988889999
Q ss_pred EEeECCCcEEEEecC
Q 024451 247 CTGSWDTNLKIWAFG 261 (267)
Q Consensus 247 ~sgs~dg~i~~w~~~ 261 (267)
+|++.|++++||+.+
T Consensus 235 vs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 235 VSTGEDRTLRIWKKD 249 (745)
T ss_pred EEecCCceEEEeecC
Confidence 999999999999854
No 115
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.93 E-value=8.9e-25 Score=174.95 Aligned_cols=234 Identities=20% Similarity=0.378 Sum_probs=186.0
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
+|.+.|||+.|++||+-.++.|||+..++.. +...+....-..++++.+|+. ...+++..||.|.|||+.++..
T Consensus 470 SckL~pdgrtLivGGeastlsiWDLAapTpr-----ikaeltssapaCyALa~spDa-kvcFsccsdGnI~vwDLhnq~~ 543 (705)
T KOG0639|consen 470 SCKLLPDGRTLIVGGEASTLSIWDLAAPTPR-----IKAELTSSAPACYALAISPDA-KVCFSCCSDGNIAVWDLHNQTL 543 (705)
T ss_pred eeEecCCCceEEeccccceeeeeeccCCCcc-----hhhhcCCcchhhhhhhcCCcc-ceeeeeccCCcEEEEEccccee
Confidence 5889999999999999999999999876522 112222333456778899975 5788999999999999998877
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT 161 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 161 (267)
+..| ++|.+-..|+.++... ..+=||+-|.+||-||++...+.. +. .....|.++..+|++..++.|-+.+.
T Consensus 544 Vrqf-----qGhtDGascIdis~dG-tklWTGGlDntvRcWDlregrqlq-qh-dF~SQIfSLg~cP~~dWlavGMens~ 615 (705)
T KOG0639|consen 544 VRQF-----QGHTDGASCIDISKDG-TKLWTGGLDNTVRCWDLREGRQLQ-QH-DFSSQIFSLGYCPTGDWLAVGMENSN 615 (705)
T ss_pred eecc-----cCCCCCceeEEecCCC-ceeecCCCccceeehhhhhhhhhh-hh-hhhhhheecccCCCccceeeecccCc
Confidence 7666 5799999999998654 456799999999999998544322 11 13467999999999999999999999
Q ss_pred EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECC
Q 024451 162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA 241 (267)
Q Consensus 162 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p 241 (267)
+.+-.....+..+.. .+..+|.++.|++.|+++++.+.|.-+..|...-+..++.. .-.+.|.++.+|.
T Consensus 616 vevlh~skp~kyqlh------lheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqs-----kE~SsVlsCDIS~ 684 (705)
T KOG0639|consen 616 VEVLHTSKPEKYQLH------LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-----KESSSVLSCDISF 684 (705)
T ss_pred EEEEecCCccceeec------ccccEEEEEEecccCceeeecCchhhhhhccCccccceeec-----cccCcceeeeecc
Confidence 999887654332221 12357999999999999999999999999997766665543 3456899999999
Q ss_pred CCCeEEEeECCCcEEEEec
Q 024451 242 DGSALCTGSWDTNLKIWAF 260 (267)
Q Consensus 242 ~~~~l~sgs~dg~i~~w~~ 260 (267)
|.+|+++||.|+...+|.+
T Consensus 685 ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 685 DDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred CceEEEecCCCcceEEEEE
Confidence 9999999999999999864
No 116
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.93 E-value=1.7e-23 Score=161.34 Aligned_cols=206 Identities=20% Similarity=0.342 Sum_probs=170.7
Q ss_pred cccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCe
Q 024451 39 SRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST 118 (267)
Q Consensus 39 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~ 118 (267)
..++..|+.+|++|+.+| +.++++||+.|..-.+|++.++.....+ .+|++.|.++.|+. ++.+++||+.+|.
T Consensus 57 ~~tF~~H~~svFavsl~P-~~~l~aTGGgDD~AflW~~~~ge~~~el-----tgHKDSVt~~~Fsh-dgtlLATGdmsG~ 129 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHP-NNNLVATGGGDDLAFLWDISTGEFAGEL-----TGHKDSVTCCSFSH-DGTLLATGDMSGK 129 (399)
T ss_pred eeehhhcCCceEEEEeCC-CCceEEecCCCceEEEEEccCCcceeEe-----cCCCCceEEEEEcc-CceEEEecCCCcc
Confidence 346889999999999999 5679999999999999999998755443 58999999999996 5678999999999
Q ss_pred EEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCC
Q 024451 119 ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR 198 (267)
Q Consensus 119 i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 198 (267)
|+||+.... .....+......+.-+.|||.+..|+.|+.||.+.+|.+.++...+.+.. +..++++-+|.|+|+
T Consensus 130 v~v~~~stg-~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~G-----h~~~ct~G~f~pdGK 203 (399)
T KOG0296|consen 130 VLVFKVSTG-GEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSG-----HNSPCTCGEFIPDGK 203 (399)
T ss_pred EEEEEcccC-ceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecC-----CCCCcccccccCCCc
Confidence 999998643 34444544567788899999999999999999999999987655454433 334688899999999
Q ss_pred EEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451 199 LLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF 260 (267)
Q Consensus 199 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~ 260 (267)
.+++|+.||.|++||+.+..++..+... -..+..+++++.++..+..|+.|+.+.+-.-
T Consensus 204 r~~tgy~dgti~~Wn~ktg~p~~~~~~~---e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~ 262 (399)
T KOG0296|consen 204 RILTGYDDGTIIVWNPKTGQPLHKITQA---EGLELPCISLNLAGSTLTKGNSEGVACGVNN 262 (399)
T ss_pred eEEEEecCceEEEEecCCCceeEEeccc---ccCcCCccccccccceeEeccCCccEEEEcc
Confidence 9999999999999999998877666432 2456788999999999999999998887653
No 117
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=1e-23 Score=159.00 Aligned_cols=227 Identities=22% Similarity=0.353 Sum_probs=170.2
Q ss_pred CceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCC-CeeEEEeeCCCeEEEEeCCCC
Q 024451 1 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE-DTHLITSSGDQTCVLWDITTG 79 (267)
Q Consensus 1 ~~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~s~~~d~~v~iwd~~~~ 79 (267)
++++|+.||..+++|+.|+++++||+.... ...+..|.++|.+|.|.+.. .+.|++||+|++||.||.++.
T Consensus 76 L~v~WsddgskVf~g~~Dk~~k~wDL~S~Q--------~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~ 147 (347)
T KOG0647|consen 76 LDVCWSDDGSKVFSGGCDKQAKLWDLASGQ--------VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSS 147 (347)
T ss_pred EEEEEccCCceEEeeccCCceEEEEccCCC--------eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCC
Confidence 578999999999999999999999998632 34567899999999998743 247899999999999999987
Q ss_pred eeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEee-ccccceeEEEEecCCCEEEEeeC
Q 024451 80 LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH-GHEGDVNTVKFFPDGNRFGTGSD 158 (267)
Q Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~ 158 (267)
..+..+. --+++.+.++- ..+++.+..+..|.+++++......+... .-+-.+.|++..++.+..+.|+.
T Consensus 148 ~pv~t~~------LPeRvYa~Dv~---~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsi 218 (347)
T KOG0647|consen 148 NPVATLQ------LPERVYAADVL---YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSI 218 (347)
T ss_pred Ceeeeee------ccceeeehhcc---CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeee
Confidence 6655542 12345555443 24778888899999999864322111111 11234789999999888899999
Q ss_pred CCcEEEEeCCCCeeeEEE-EeecCC----C-CCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccc
Q 024451 159 DGTCRLFDIRTGHQLQVY-YQQHGE----N-EIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEG 232 (267)
Q Consensus 159 d~~i~iwd~~~~~~~~~~-~~~~~~----~-~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 232 (267)
.|.+-|..+..+.....+ ++-|.. . ....|.+++|+|.-..|++.++||.+.+||-.....+... ..|..
T Consensus 219 EGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s----~~~~q 294 (347)
T KOG0647|consen 219 EGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTS----ETHPQ 294 (347)
T ss_pred cceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhcc----CcCCC
Confidence 999999999876333222 222321 1 1345889999999999999999999999997655544433 46889
Q ss_pred eEEEEEECCCCCeEEE
Q 024451 233 RITCLGLSADGSALCT 248 (267)
Q Consensus 233 ~v~~~~~~p~~~~l~s 248 (267)
+|+|.+|+.+|.++|=
T Consensus 295 pItcc~fn~~G~ifaY 310 (347)
T KOG0647|consen 295 PITCCSFNRNGSIFAY 310 (347)
T ss_pred ccceeEecCCCCEEEE
Confidence 9999999999998873
No 118
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=1.6e-23 Score=158.29 Aligned_cols=228 Identities=24% Similarity=0.379 Sum_probs=169.6
Q ss_pred CceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451 1 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL 80 (267)
Q Consensus 1 ~~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 80 (267)
++|+|.+ ...+++|+.||.|+++|+.... ...+..|..+|.|+.+.+.. ..+++||+|++|++||.....
T Consensus 58 L~c~F~d-~~~~~~G~~dg~vr~~Dln~~~--------~~~igth~~~i~ci~~~~~~-~~vIsgsWD~~ik~wD~R~~~ 127 (323)
T KOG1036|consen 58 LDCAFAD-ESTIVTGGLDGQVRRYDLNTGN--------EDQIGTHDEGIRCIEYSYEV-GCVISGSWDKTIKFWDPRNKV 127 (323)
T ss_pred eeeeccC-CceEEEeccCceEEEEEecCCc--------ceeeccCCCceEEEEeeccC-CeEEEcccCccEEEEeccccc
Confidence 5788987 4569999999999999997632 23355699999999999854 579999999999999998643
Q ss_pred eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEE-eeccccceeEEEEecCCCEEEEeeCC
Q 024451 81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRT-FHGHEGDVNTVKFFPDGNRFGTGSDD 159 (267)
Q Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d 159 (267)
....+ .....|.++... +..|+.|+.|..+.+||++........ -..-+-.+.|+++.|++.-+++++-|
T Consensus 128 ~~~~~------d~~kkVy~~~v~---g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSie 198 (323)
T KOG1036|consen 128 VVGTF------DQGKKVYCMDVS---GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIE 198 (323)
T ss_pred ccccc------ccCceEEEEecc---CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeec
Confidence 33322 233478887764 346788999999999999854433311 11224568999999988889999999
Q ss_pred CcEEEEeCCCCee---eEEEEeecCCCC-----CCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCcc
Q 024451 160 GTCRLFDIRTGHQ---LQVYYQQHGENE-----IPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHE 231 (267)
Q Consensus 160 ~~i~iwd~~~~~~---~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 231 (267)
|.|-+=.++.... ..-.+..|.... .-+|.+++|+|--..+++|++||.|.+||+...+.+.++.. .+
T Consensus 199 GRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~----~~ 274 (323)
T KOG1036|consen 199 GRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAK----YE 274 (323)
T ss_pred ceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccC----CC
Confidence 9988755554311 111122232221 23689999999999999999999999999988887766532 34
Q ss_pred ceEEEEEECCCCCeEEEeEC
Q 024451 232 GRITCLGLSADGSALCTGSW 251 (267)
Q Consensus 232 ~~v~~~~~~p~~~~l~sgs~ 251 (267)
..|.+++|+-+|..||.++.
T Consensus 275 ~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 275 TSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred CceEEEEeccCCCeEEEEec
Confidence 57999999999999999875
No 119
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=4.1e-24 Score=160.84 Aligned_cols=213 Identities=22% Similarity=0.371 Sum_probs=167.1
Q ss_pred cccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe----------eEEEeCCccccCCccceEEEEEeCCCCeEE
Q 024451 41 MLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL----------RTSVFGGEFQSGHTADVLSVSISGSNSRMF 110 (267)
Q Consensus 41 ~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~----------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 110 (267)
....|.+.|.++++.+.+++++++|+.||.|.+||++... ..++...+...+|.-.|.++-|-|-+..+|
T Consensus 38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence 3457999999999999999999999999999999997532 122233344568899999999999888899
Q ss_pred EEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCC---CEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCc
Q 024451 111 VSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG---NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH 187 (267)
Q Consensus 111 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 187 (267)
.+++.|.++++||..+.. ....++ .++.|.+-+++|-. -++|+|..|-+|++.|+.++.....+ .++...
T Consensus 118 tssSFDhtlKVWDtnTlQ-~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~L-----sGHr~~ 190 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQ-EAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTL-----SGHRDG 190 (397)
T ss_pred ecccccceEEEeecccce-eeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeee-----ccccCc
Confidence 999999999999987533 233333 45778888888843 36788889999999999998765443 344567
Q ss_pred EEEEEEccCCCE-EEEEEeCCeEEEEeCCccc-eee----------ecccccCCccceEEEEEECCCCCeEEEeECCCcE
Q 024451 188 VTSIAFSISGRL-LFAGYSNGDCYVWDTLLAK-VVL----------NLGSLQNSHEGRITCLGLSADGSALCTGSWDTNL 255 (267)
Q Consensus 188 v~~~~~s~~~~~-l~~g~~dg~i~i~d~~~~~-~~~----------~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i 255 (267)
|.++.|+|...+ |++|+.||.+++||++..- ... ........|.+.+..++|+.++.++++++.|..+
T Consensus 191 vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~ 270 (397)
T KOG4283|consen 191 VLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRI 270 (397)
T ss_pred eEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccce
Confidence 999999999886 5778999999999986531 110 0001124689999999999999999999999999
Q ss_pred EEEec
Q 024451 256 KIWAF 260 (267)
Q Consensus 256 ~~w~~ 260 (267)
++|..
T Consensus 271 r~wn~ 275 (397)
T KOG4283|consen 271 RVWNM 275 (397)
T ss_pred EEeec
Confidence 99975
No 120
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.5e-23 Score=159.10 Aligned_cols=248 Identities=21% Similarity=0.287 Sum_probs=178.2
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
||.|++-|.+||.|+.||.|.+||..+.. ..+++.+|..+|.|+.|++++ +.|+|+|.|..|++||+..+..
T Consensus 28 ~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~-------iar~lsaH~~pi~sl~WS~dg-r~LltsS~D~si~lwDl~~gs~ 99 (405)
T KOG1273|consen 28 CCQFSRWGDYLAVGCANGRVVIYDFDTFR-------IARMLSAHVRPITSLCWSRDG-RKLLTSSRDWSIKLWDLLKGSP 99 (405)
T ss_pred eEEeccCcceeeeeccCCcEEEEEccccc-------hhhhhhccccceeEEEecCCC-CEeeeecCCceeEEEeccCCCc
Confidence 78999999999999999999999997632 677899999999999999976 6899999999999999998875
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeecc---ccceeEEEEecCCCEEEEeeC
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH---EGDVNTVKFFPDGNRFGTGSD 158 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~ 158 (267)
...+. -..+|....|+|...+.++..-.+..-.+-++.......-..... +....+..|++.|+++++|..
T Consensus 100 l~rir------f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGts 173 (405)
T KOG1273|consen 100 LKRIR------FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTS 173 (405)
T ss_pred eeEEE------ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecC
Confidence 55442 345788888888777777666555555555543211111111100 111234468899999999999
Q ss_pred CCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccC-------Ccc
Q 024451 159 DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQN-------SHE 231 (267)
Q Consensus 159 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~-------~~~ 231 (267)
.|.+.++|..+.++...+.... ...|..+.++..|++++.-++|+.|+.|+.+.--....-..... ...
T Consensus 174 KGkllv~~a~t~e~vas~rits----~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk 249 (405)
T KOG1273|consen 174 KGKLLVYDAETLECVASFRITS----VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNK 249 (405)
T ss_pred cceEEEEecchheeeeeeeech----heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhh
Confidence 9999999999887765544322 24588999999999999999999999999652110000000000 112
Q ss_pred ceEEEEEECCCCCeEEEeEC-CCcEEEE--ecCceEecC
Q 024451 232 GRITCLGLSADGSALCTGSW-DTNLKIW--AFGGYRRVL 267 (267)
Q Consensus 232 ~~v~~~~~~p~~~~l~sgs~-dg~i~~w--~~~~~~~~~ 267 (267)
-...+++|+-+|.|+..|+. -..+.|| .++.|.++|
T Consensus 250 ~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKIL 288 (405)
T KOG1273|consen 250 LQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKIL 288 (405)
T ss_pred hhhhheeecCCccEEEeccccceeEEEEecCCcceeeee
Confidence 34678999999999887664 4458999 456666654
No 121
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.1e-23 Score=173.01 Aligned_cols=235 Identities=21% Similarity=0.363 Sum_probs=180.2
Q ss_pred eeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEE
Q 024451 4 AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS 83 (267)
Q Consensus 4 ~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~ 83 (267)
.|+ ..+.|+.|. ...|.+|+..... +.....-+...|+++.|++++ .+|+.|..+|.|.|||..+.....
T Consensus 184 dWs-s~n~laVal-g~~vylW~~~s~~-------v~~l~~~~~~~vtSv~ws~~G-~~LavG~~~g~v~iwD~~~~k~~~ 253 (484)
T KOG0305|consen 184 DWS-SANVLAVAL-GQSVYLWSASSGS-------VTELCSFGEELVTSVKWSPDG-SHLAVGTSDGTVQIWDVKEQKKTR 253 (484)
T ss_pred hcc-cCCeEEEEe-cceEEEEecCCCc-------eEEeEecCCCceEEEEECCCC-CEEEEeecCCeEEEEehhhccccc
Confidence 355 344566554 3469999975421 222222337889999999976 589999999999999998876665
Q ss_pred EeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEE
Q 024451 84 VFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCR 163 (267)
Q Consensus 84 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~ 163 (267)
.+. ..|...|-+++|. ...+.+|+.|+.|..+|++........+.+|...|..+.|+++++++|+|+.|+.+.
T Consensus 254 ~~~----~~h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~ 326 (484)
T KOG0305|consen 254 TLR----GSHASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVF 326 (484)
T ss_pred ccc----CCcCceeEEEecc---CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceE
Confidence 543 1288999999996 457889999999999999876655555889999999999999999999999999999
Q ss_pred EEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCC-CEEEEE--EeCCeEEEEeCCccceeeecccccCCccceEEEEEEC
Q 024451 164 LFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG-RLLFAG--YSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS 240 (267)
Q Consensus 164 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~g--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~ 240 (267)
|||......+..+.+ +...|.+++|+|-. ..||+| +.|+.|++||..+++.+... .....|.+|.|+
T Consensus 327 Iwd~~~~~p~~~~~~-----H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~v-----dtgsQVcsL~Ws 396 (484)
T KOG0305|consen 327 IWDGLSPEPKFTFTE-----HTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSV-----DTGSQVCSLIWS 396 (484)
T ss_pred eccCCCccccEEEec-----cceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccc-----ccCCceeeEEEc
Confidence 999966555444332 34579999999964 566775 47999999999888776554 345679999999
Q ss_pred CCCCeEEE--eECCCcEEEEecCceEe
Q 024451 241 ADGSALCT--GSWDTNLKIWAFGGYRR 265 (267)
Q Consensus 241 p~~~~l~s--gs~dg~i~~w~~~~~~~ 265 (267)
|..+.|++ |-.++.|.||++-.+.+
T Consensus 397 k~~kEi~sthG~s~n~i~lw~~ps~~~ 423 (484)
T KOG0305|consen 397 KKYKELLSTHGYSENQITLWKYPSMKL 423 (484)
T ss_pred CCCCEEEEecCCCCCcEEEEeccccce
Confidence 98876665 44477899999855443
No 122
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.2e-23 Score=165.83 Aligned_cols=242 Identities=25% Similarity=0.354 Sum_probs=178.1
Q ss_pred CCCeEEEccCCCeEEEeecCCCCCCCCC--------------CcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEE
Q 024451 8 TGQSVACGGLDSVCSIFNLNSPTDKDGN--------------LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVL 73 (267)
Q Consensus 8 ~g~~l~~~~~d~~v~~w~~~~~~~~~~~--------------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~i 73 (267)
.|+++|.|.+|..|.|||+.-.+.-... .+......+|++.|-+++|+..-...|||||.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 4689999999999999998753211000 01111245799999999998877789999999999999
Q ss_pred EeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecC-CCE
Q 024451 74 WDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD-GNR 152 (267)
Q Consensus 74 wd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~ 152 (267)
||+.++.+..++. .|.+.|.++.|++.....+++|+.|++|++.|.|.....-...+ -.+.|..+.|.|. ...
T Consensus 271 WD~~~g~p~~s~~-----~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~se~~ 344 (463)
T KOG0270|consen 271 WDVDTGKPKSSIT-----HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPHSENS 344 (463)
T ss_pred EEcCCCCcceehh-----hcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccceEEEEecCCCcee
Confidence 9999998777653 58899999999999999999999999999999985333222222 2467899999885 467
Q ss_pred EEEeeCCCcEEEEeCCCCe-eeEEEEeecCCCCCCcEEEEEEccCC-CEEEEEEeCCeEEEEeCCccceeeecccccCCc
Q 024451 153 FGTGSDDGTCRLFDIRTGH-QLQVYYQQHGENEIPHVTSIAFSISG-RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSH 230 (267)
Q Consensus 153 l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~ 230 (267)
++++..||+++-+|+|... .+... +.| ..+|+++++++.. .++++++.++.+++|+......-....+ .--
T Consensus 345 f~~~tddG~v~~~D~R~~~~~vwt~-~AH----d~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~--~~~ 417 (463)
T KOG0270|consen 345 FFVSTDDGTVYYFDIRNPGKPVWTL-KAH----DDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEH--SFK 417 (463)
T ss_pred EEEecCCceEEeeecCCCCCceeEE-Eec----cCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccc--ccc
Confidence 8888999999999999864 33332 222 3469999988764 4678899999999999754322110000 001
Q ss_pred cceEEEEEECCCCC-eEEEeECCCcEEEEecCc
Q 024451 231 EGRITCLGLSADGS-ALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 231 ~~~v~~~~~~p~~~-~l~sgs~dg~i~~w~~~~ 262 (267)
-+...|.++.|+-. +||.|+..+.++||++..
T Consensus 418 ~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~ 450 (463)
T KOG0270|consen 418 LGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFT 450 (463)
T ss_pred ccceeecccCCCcceEEEecCccceEEEeeccc
Confidence 23477888888754 567788888999999743
No 123
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=1.4e-25 Score=186.23 Aligned_cols=228 Identities=24% Similarity=0.450 Sum_probs=183.2
Q ss_pred CCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeC
Q 024451 7 PTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFG 86 (267)
Q Consensus 7 ~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~ 86 (267)
|.+..++..-.+-.+++|+.. .+-.|...|.|+..-. ..+.+++|+.|..+.+|.+.....+-.
T Consensus 2 ~~~~~~m~~~~~t~Lr~~~~~-------------~~~~hsaav~~lk~~~-s~r~~~~Gg~~~k~~L~~i~kp~~i~S-- 65 (825)
T KOG0267|consen 2 PGMEFLMKTKRATKLRVWDTR-------------EFVAHSAAVGCLKIRK-SSRSLVTGGEDEKVNLWAIGKPNAITS-- 65 (825)
T ss_pred Ccccccceeeeeeccccccch-------------hhhhhhhhhceeeeec-cceeeccCCCceeeccccccCCchhhe--
Confidence 334444554445556667643 3446888888888744 446899999999999998865443322
Q ss_pred CccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEe
Q 024451 87 GEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFD 166 (267)
Q Consensus 87 ~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd 166 (267)
..+|+..|.++.++.. ..++++|+.+|+|++||+.. .+.++.+.+|...+.++.|+|.+.++++|+.|..+++||
T Consensus 66 ---~~~hespIeSl~f~~~-E~LlaagsasgtiK~wDlee-Ak~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD 140 (825)
T KOG0267|consen 66 ---LTGHESPIESLTFDTS-ERLLAAGSASGTIKVWDLEE-AKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWD 140 (825)
T ss_pred ---eeccCCcceeeecCcc-hhhhcccccCCceeeeehhh-hhhhhhhhccccCcceeeeccceEEeccccccccceehh
Confidence 2579999999999864 56889999999999999974 456778889999999999999999999999999999999
Q ss_pred CCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeE
Q 024451 167 IRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSAL 246 (267)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l 246 (267)
++...+...+.. +...+..+.|+|+|++++.|+.|..++|||...++....+ ..|++.+..+.|+|..-+|
T Consensus 141 ~Rk~Gc~~~~~s-----~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef----~~~e~~v~sle~hp~e~Ll 211 (825)
T KOG0267|consen 141 IRKKGCSHTYKS-----HTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEF----KSHEGKVQSLEFHPLEVLL 211 (825)
T ss_pred hhccCceeeecC-----CcceeEEEeecCCCceeeccCCcceeeeeccccccccccc----ccccccccccccCchhhhh
Confidence 986555544322 3345788899999999999999999999999888877665 5699999999999999999
Q ss_pred EEeECCCcEEEEecCceE
Q 024451 247 CTGSWDTNLKIWAFGGYR 264 (267)
Q Consensus 247 ~sgs~dg~i~~w~~~~~~ 264 (267)
++||.|+++++|++..|.
T Consensus 212 a~Gs~d~tv~f~dletfe 229 (825)
T KOG0267|consen 212 APGSSDRTVRFWDLETFE 229 (825)
T ss_pred ccCCCCceeeeeccceeE
Confidence 999999999999986554
No 124
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.92 E-value=4.4e-24 Score=162.68 Aligned_cols=246 Identities=24% Similarity=0.362 Sum_probs=182.4
Q ss_pred ceeeCC---C-CCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCC
Q 024451 2 TCAFSP---T-GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT 77 (267)
Q Consensus 2 ~~~~~~---~-g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~ 77 (267)
+|+|+- + ..+||.||.-|.|+|.|+... .+...+.+|.+.|..+.+.|...+++++||.|.+||+||++
T Consensus 94 tcsw~yd~~~~~p~la~~G~~GvIrVid~~~~-------~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 94 TCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSG-------QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred EEEEEecCCCCCeeEEeecceeEEEEEecchh-------hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 566652 2 468999999999999998753 25667889999999999999988899999999999999999
Q ss_pred CCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcc--------------cc-------------
Q 024451 78 TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS--------------RA------------- 130 (267)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~--------------~~------------- 130 (267)
+...+.++++. .+|.+.|.+++|+... ..++++|.|-++++|++.... +.
T Consensus 167 ~~~Cv~VfGG~--egHrdeVLSvD~~~~g-d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~ 243 (385)
T KOG1034|consen 167 TDVCVAVFGGV--EGHRDEVLSVDFSLDG-DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPD 243 (385)
T ss_pred CCeEEEEeccc--ccccCcEEEEEEcCCC-CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccc
Confidence 99999998765 5899999999999754 578999999999999986211 00
Q ss_pred eEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeC-CCCeeeEEE---------EeecC-CCCCCcEEEEEEccCCCE
Q 024451 131 VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDI-RTGHQLQVY---------YQQHG-ENEIPHVTSIAFSISGRL 199 (267)
Q Consensus 131 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~-~~~~~~~~~---------~~~~~-~~~~~~v~~~~~s~~~~~ 199 (267)
...-.-|...|.|+.|. |+++++=+-++.|..|-. +-++.+... ..+.. .+-..+-...+|++-++.
T Consensus 244 fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~ 321 (385)
T KOG1034|consen 244 FSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKM 321 (385)
T ss_pred ccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHH
Confidence 00123466667777775 578888888899999987 222211111 11000 000112334567788999
Q ss_pred EEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEe
Q 024451 200 LFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWA 259 (267)
Q Consensus 200 l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~ 259 (267)
|+.|...|.+++||+...+...............|...+|+.||.+|+....|++|-=|+
T Consensus 322 la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 322 LALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred HhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 999999999999999877654322212223356799999999999999999999887775
No 125
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.92 E-value=7.4e-25 Score=167.01 Aligned_cols=209 Identities=24% Similarity=0.368 Sum_probs=163.9
Q ss_pred CCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCc---cccCCccceEEEEEeCCCCeEEEEecCCCeEE
Q 024451 44 GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE---FQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 120 (267)
Q Consensus 44 ~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~ 120 (267)
+.++.+-|..|+|++ ++|++|+-||-|.+||..+++...-+..+ ...-+...+.+++|+. +..++++|+.||.|+
T Consensus 211 g~KSh~EcA~FSPDg-qyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSR-DsEMlAsGsqDGkIK 288 (508)
T KOG0275|consen 211 GQKSHVECARFSPDG-QYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSR-DSEMLASGSQDGKIK 288 (508)
T ss_pred ccccchhheeeCCCC-ceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecc-cHHHhhccCcCCcEE
Confidence 667788999999975 79999999999999999888543322211 1134778899999985 567899999999999
Q ss_pred EEeCCCcccceEEee-ccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCE
Q 024451 121 LWDTRVASRAVRTFH-GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRL 199 (267)
Q Consensus 121 iwd~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 199 (267)
+|.++++. .++.+. +|...|+|+.|+.|+..+.+++.|.++|+--+++++++..+.. +...|....|+++|..
T Consensus 289 vWri~tG~-ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrG-----HsSyvn~a~ft~dG~~ 362 (508)
T KOG0275|consen 289 VWRIETGQ-CLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRG-----HSSYVNEATFTDDGHH 362 (508)
T ss_pred EEEEecch-HHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcC-----ccccccceEEcCCCCe
Confidence 99998654 455554 8999999999999999999999999999999999998776543 3457899999999999
Q ss_pred EEEEEeCCeEEEEeCCccceeeeccc------------cc-------------------------------CCccceEEE
Q 024451 200 LFAGYSNGDCYVWDTLLAKVVLNLGS------------LQ-------------------------------NSHEGRITC 236 (267)
Q Consensus 200 l~~g~~dg~i~i~d~~~~~~~~~~~~------------~~-------------------------------~~~~~~v~~ 236 (267)
++++++||.|++|+..+.+.+..+.. ++ +.-.+...+
T Consensus 363 iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~ 442 (508)
T KOG0275|consen 363 IISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFIN 442 (508)
T ss_pred EEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEE
Confidence 99999999999999765442211100 00 001234456
Q ss_pred EEECCCCCeEEEeECCCcEEEEec
Q 024451 237 LGLSADGSALCTGSWDTNLKIWAF 260 (267)
Q Consensus 237 ~~~~p~~~~l~sgs~dg~i~~w~~ 260 (267)
.+.+|.|+++.+.+.|+.+.-|.+
T Consensus 443 ~~lSpkGewiYcigED~vlYCF~~ 466 (508)
T KOG0275|consen 443 AILSPKGEWIYCIGEDGVLYCFSV 466 (508)
T ss_pred EEecCCCcEEEEEccCcEEEEEEe
Confidence 778999999999999998888754
No 126
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.92 E-value=7e-24 Score=169.60 Aligned_cols=221 Identities=19% Similarity=0.284 Sum_probs=176.8
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
|++......++++||..+.|+|||+... -+.+.+++|++-|+++.++-. +.+|++++..|.|.|..+.++.+
T Consensus 84 Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k-------l~hr~lkdh~stvt~v~YN~~-DeyiAsvs~gGdiiih~~~t~~~ 155 (673)
T KOG4378|consen 84 CVACASQSLYEISGGQSGCVKIWDLRAK-------LIHRFLKDHQSTVTYVDYNNT-DEYIASVSDGGDIIIHGTKTKQK 155 (673)
T ss_pred HHhhhhcceeeeccCcCceeeehhhHHH-------HHhhhccCCcceeEEEEecCC-cceeEEeccCCcEEEEecccCcc
Confidence 3444456689999999999999998742 267789999999999999875 46999999999999999998876
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecC-CCEEEEeeCCC
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD-GNRFGTGSDDG 160 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~ 160 (267)
.-.|.. +....+.-+.+++....++.+++.+|.|.+||+............|..++..++|+|. ...|++.+.|+
T Consensus 156 tt~f~~----~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dk 231 (673)
T KOG4378|consen 156 TTTFTI----DSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDK 231 (673)
T ss_pred ccceec----CCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccc
Confidence 555431 2233456788998877888899999999999997544444455689999999999995 56789999999
Q ss_pred cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEEC
Q 024451 161 TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS 240 (267)
Q Consensus 161 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~ 240 (267)
+|.+||++.......+... .+.+.++|+++|.+|++|...|.|+.||++..+.+.... ..|...|++++|-
T Consensus 232 ki~~yD~~s~~s~~~l~y~------~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~---sah~~sVt~vafq 302 (673)
T KOG4378|consen 232 KINIYDIRSQASTDRLTYS------HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVR---SAHDASVTRVAFQ 302 (673)
T ss_pred eEEEeecccccccceeeec------CCcceeeecCCceEEEeecCCceEEEEecccCCCCceEe---eecccceeEEEee
Confidence 9999999876555444332 257899999999999999999999999998766654443 3588889999998
Q ss_pred CCC
Q 024451 241 ADG 243 (267)
Q Consensus 241 p~~ 243 (267)
|..
T Consensus 303 ~s~ 305 (673)
T KOG4378|consen 303 PSP 305 (673)
T ss_pred ecc
Confidence 754
No 127
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.92 E-value=5.6e-24 Score=164.72 Aligned_cols=214 Identities=22% Similarity=0.359 Sum_probs=159.4
Q ss_pred ccCCeeeEEEEEEecCC-CeeEEEeeCCCeEEEEeCCCCeeEE-----------EeCCccccCCccceEEEEEeCCCCeE
Q 024451 42 LSGHKGYVSCCQYVPDE-DTHLITSSGDQTCVLWDITTGLRTS-----------VFGGEFQSGHTADVLSVSISGSNSRM 109 (267)
Q Consensus 42 ~~~h~~~v~~~~~~~~~-~~~l~s~~~d~~v~iwd~~~~~~~~-----------~~~~~~~~~~~~~i~~~~~~~~~~~~ 109 (267)
.-+|.+.+.-++..+.+ ..+.++-+..|.|+|||+....... .-+.....+|...-..++|+|.....
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~ 226 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR 226 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence 34677777777766653 3456677888999999996421100 00001124677778899999866666
Q ss_pred EEEecCCCeEEEEeCCCccc--ceEEeeccccceeEEEEecC-CCEEEEeeCCCcEEEEeCCCCeeeEEE-EeecCCCCC
Q 024451 110 FVSGSCDSTARLWDTRVASR--AVRTFHGHEGDVNTVKFFPD-GNRFGTGSDDGTCRLFDIRTGHQLQVY-YQQHGENEI 185 (267)
Q Consensus 110 ~~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~ 185 (267)
+++|.+-+.|++|....+.- ....+.+|+..|..+.|+|. ...|++||-|++|+|||+|.+.....+ .+.+ .
T Consensus 227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh----~ 302 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAH----N 302 (440)
T ss_pred cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeecc----C
Confidence 88999999999998765321 23456689999999999995 568999999999999999998443332 2222 2
Q ss_pred CcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCC-CCeEEEeECCCcEEEEec
Q 024451 186 PHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD-GSALCTGSWDTNLKIWAF 260 (267)
Q Consensus 186 ~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~l~sgs~dg~i~~w~~ 260 (267)
..|..+.|+..-.+|++|+.||.++|||+++.+.-..+..+ +.|..+|+++.|+|. ...|++++.|..|.|||+
T Consensus 303 sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~f-k~Hk~pItsieW~p~e~s~iaasg~D~QitiWDl 377 (440)
T KOG0302|consen 303 SDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATF-KYHKAPITSIEWHPHEDSVIAASGEDNQITIWDL 377 (440)
T ss_pred CceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeE-EeccCCeeEEEeccccCceEEeccCCCcEEEEEe
Confidence 46999999999889999999999999999876544333333 569999999999986 456788889999999997
No 128
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.92 E-value=1.2e-21 Score=157.67 Aligned_cols=242 Identities=16% Similarity=0.180 Sum_probs=163.1
Q ss_pred ceeeCCCCCeE-EEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451 2 TCAFSPTGQSV-ACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL 80 (267)
Q Consensus 2 ~~~~~~~g~~l-~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 80 (267)
.++|+|+|+.+ ++++.++.+++||..... ....+..+.. +..+.|+|++..++++++.|+.|++||+.+..
T Consensus 35 ~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~-------~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~ 106 (300)
T TIGR03866 35 GITLSKDGKLLYVCASDSDTIQVIDLATGE-------VIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRK 106 (300)
T ss_pred ceEECCCCCEEEEEECCCCeEEEEECCCCc-------EEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCe
Confidence 47899999876 677889999999986421 2223333333 45678899876555566778999999998866
Q ss_pred eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCC-eEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEE-eeC
Q 024451 81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS-TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGT-GSD 158 (267)
Q Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~ 158 (267)
....+. +...+..+.+++ ++++++++..++ .+.+||.+... ...... .......+.|+|+++.++. +..
T Consensus 107 ~~~~~~------~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~-~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~ 177 (300)
T TIGR03866 107 VLAEIP------VGVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYE-IVDNVL-VDQRPRFAEFTADGKELWVSSEI 177 (300)
T ss_pred EEeEee------CCCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCe-EEEEEE-cCCCccEEEECCCCCEEEEEcCC
Confidence 554442 122346678876 455666666654 57778976432 222222 2234578999999998754 456
Q ss_pred CCcEEEEeCCCCeeeEEEEeecCC--CCCCcEEEEEEccCCCEEEEE-EeCCeEEEEeCCccceeeecccccCCccceEE
Q 024451 159 DGTCRLFDIRTGHQLQVYYQQHGE--NEIPHVTSIAFSISGRLLFAG-YSNGDCYVWDTLLAKVVLNLGSLQNSHEGRIT 235 (267)
Q Consensus 159 d~~i~iwd~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~g-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~ 235 (267)
++.|++||+++++....+...... ........++|+|++++++++ ..++.+.+||..+.+..... .+...+.
T Consensus 178 ~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~-----~~~~~~~ 252 (300)
T TIGR03866 178 GGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYL-----LVGQRVW 252 (300)
T ss_pred CCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE-----EeCCCcc
Confidence 999999999988765443211100 011123568899999986554 45678999998876655332 1334688
Q ss_pred EEEECCCCCeEEEe-ECCCcEEEEecCceEe
Q 024451 236 CLGLSADGSALCTG-SWDTNLKIWAFGGYRR 265 (267)
Q Consensus 236 ~~~~~p~~~~l~sg-s~dg~i~~w~~~~~~~ 265 (267)
+++|+|+|++|+++ +.+|.|++|++.+...
T Consensus 253 ~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~ 283 (300)
T TIGR03866 253 QLAFTPDEKYLLTTNGVSNDVSVIDVAALKV 283 (300)
T ss_pred eEEECCCCCEEEEEcCCCCeEEEEECCCCcE
Confidence 99999999999876 4699999999877553
No 129
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.92 E-value=2.2e-22 Score=161.31 Aligned_cols=237 Identities=20% Similarity=0.325 Sum_probs=177.4
Q ss_pred CceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451 1 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL 80 (267)
Q Consensus 1 ~~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 80 (267)
+|.+|.++|+ .+||..+|.+.||+..... ..+....|.+.|+++.-..++ .|+||+.|..|..||-.-..
T Consensus 250 l~v~F~engd-viTgDS~G~i~Iw~~~~~~-------~~k~~~aH~ggv~~L~~lr~G--tllSGgKDRki~~Wd~~y~k 319 (626)
T KOG2106|consen 250 LCVTFLENGD-VITGDSGGNILIWSKGTNR-------ISKQVHAHDGGVFSLCMLRDG--TLLSGGKDRKIILWDDNYRK 319 (626)
T ss_pred EEEEEcCCCC-EEeecCCceEEEEeCCCce-------EEeEeeecCCceEEEEEecCc--cEeecCccceEEeccccccc
Confidence 4678999988 8899999999999975421 333344899999999888764 47889999999999842111
Q ss_pred e------------EEEeC----------------Cc-------cccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCC
Q 024451 81 R------------TSVFG----------------GE-------FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTR 125 (267)
Q Consensus 81 ~------------~~~~~----------------~~-------~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~ 125 (267)
. ..+++ +. ..++|.+....++.+|+ ..+++|++.|+.+++|+-
T Consensus 320 ~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps-~~q~~T~gqdk~v~lW~~- 397 (626)
T KOG2106|consen 320 LRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPS-KNQLLTCGQDKHVRLWND- 397 (626)
T ss_pred cccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCC-hhheeeccCcceEEEccC-
Confidence 0 00000 00 12468888888888865 457899999999999982
Q ss_pred CcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEe
Q 024451 126 VASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS 205 (267)
Q Consensus 126 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~ 205 (267)
.++.-.. .-..++.|+.|+|.| .+|.|...|...+.|.++...+.. +.. ..+++.++|+|+|.+||.|+.
T Consensus 398 --~k~~wt~-~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~----~~d--~~~ls~v~ysp~G~~lAvgs~ 467 (626)
T KOG2106|consen 398 --HKLEWTK-IIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTI----HTD--NEQLSVVRYSPDGAFLAVGSH 467 (626)
T ss_pred --CceeEEE-EecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEE----Eec--CCceEEEEEcCCCCEEEEecC
Confidence 2222222 235789999999999 999999999999999988444332 222 346999999999999999999
Q ss_pred CCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451 206 NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG 261 (267)
Q Consensus 206 dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~ 261 (267)
|+.|+||-+........... ..+..+|+.+.||+|+++|.+-|-|-.|..|+.+
T Consensus 468 d~~iyiy~Vs~~g~~y~r~~--k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~ 521 (626)
T KOG2106|consen 468 DNHIYIYRVSANGRKYSRVG--KCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPS 521 (626)
T ss_pred CCeEEEEEECCCCcEEEEee--eecCceeEEeeecCCCceEEeccCceEEEEEccc
Confidence 99999998765443322211 3345899999999999999999999999999643
No 130
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=4.5e-24 Score=185.24 Aligned_cols=250 Identities=18% Similarity=0.281 Sum_probs=193.9
Q ss_pred ceeeCCCCCe----EEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCC
Q 024451 2 TCAFSPTGQS----VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT 77 (267)
Q Consensus 2 ~~~~~~~g~~----l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~ 77 (267)
.++|.+-|.. |+.|..||.|.+||...- ......++..+...|++.|..+.|++...++|++|+.||.|.|||+.
T Consensus 69 kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~-~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDln 147 (1049)
T KOG0307|consen 69 KLAWGSYGSHSHGLIAGGLEDGNIVLYDPASI-IANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLN 147 (1049)
T ss_pred eeeecccCCCccceeeccccCCceEEecchhh-ccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccC
Confidence 5778887766 999999999999997652 12344567778889999999999999888899999999999999998
Q ss_pred CCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccc--cceeEEEEecCC-CEEE
Q 024451 78 TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE--GDVNTVKFFPDG-NRFG 154 (267)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~--~~i~~~~~~~~~-~~l~ 154 (267)
......... ...-.+.|.+++|+....++|++++.+|.+.|||++.. +.+-.+..+. ..+..++|||+. ..++
T Consensus 148 n~~tP~~~~---~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~-~pii~ls~~~~~~~~S~l~WhP~~aTql~ 223 (1049)
T KOG0307|consen 148 KPETPFTPG---SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK-KPIIKLSDTPGRMHCSVLAWHPDHATQLL 223 (1049)
T ss_pred CcCCCCCCC---CCCCcccceEeccchhhhHHhhccCCCCCceeccccCC-CcccccccCCCccceeeeeeCCCCceeee
Confidence 754333322 12345789999999888889999999999999999854 4444444343 347889999975 4566
Q ss_pred EeeCCC---cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCC-CEEEEEEeCCeEEEEeCCccceeeecccccCCc
Q 024451 155 TGSDDG---TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG-RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSH 230 (267)
Q Consensus 155 ~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~ 230 (267)
++++|. .|.+||+|........++ .+...|.++.|++.+ .++++++.|+.+..|+..+++.+..+. ..
T Consensus 224 ~As~dd~~PviqlWDlR~assP~k~~~----~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p----~~ 295 (1049)
T KOG0307|consen 224 VASGDDSAPVIQLWDLRFASSPLKILE----GHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP----AQ 295 (1049)
T ss_pred eecCCCCCceeEeecccccCCchhhhc----ccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecC----CC
Confidence 676654 599999987654433332 233469999999877 788999999999999999988876653 34
Q ss_pred cceEEEEEECCCCC-eEEEeECCCcEEEEecCceE
Q 024451 231 EGRITCLGLSADGS-ALCTGSWDTNLKIWAFGGYR 264 (267)
Q Consensus 231 ~~~v~~~~~~p~~~-~l~sgs~dg~i~~w~~~~~~ 264 (267)
...+..+.|.|... .++.++-||.|.||.+.+..
T Consensus 296 ~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 296 GNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 56789999998655 78889999999999987654
No 131
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.1e-23 Score=154.61 Aligned_cols=214 Identities=17% Similarity=0.256 Sum_probs=160.5
Q ss_pred cccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEe-CCCCeEEEEecCCC
Q 024451 39 SRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS-GSNSRMFVSGSCDS 117 (267)
Q Consensus 39 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~s~~~d~ 117 (267)
..+...|++.|+.+...-.+ ..|++++.|++|||+.++...+...+ ..+.+|++++..+.|. |..+.+|++++.||
T Consensus 4 q~idt~H~D~IHda~lDyyg-krlATcsSD~tVkIf~v~~n~~s~ll--~~L~Gh~GPVwqv~wahPk~G~iLAScsYDg 80 (299)
T KOG1332|consen 4 QTIDTQHEDMIHDAQLDYYG-KRLATCSSDGTVKIFEVRNNGQSKLL--AELTGHSGPVWKVAWAHPKFGTILASCSYDG 80 (299)
T ss_pred eehhhhhhhhhhHhhhhhhc-ceeeeecCCccEEEEEEcCCCCceee--eEecCCCCCeeEEeecccccCcEeeEeecCc
Confidence 34556899999887766555 46999999999999999765431111 1236899999999986 45678999999999
Q ss_pred eEEEEeCCCcc-cceEEeeccccceeEEEEecC--CCEEEEeeCCCcEEEEeCCCCe--eeEEEEeecCCCCCCcEEEEE
Q 024451 118 TARLWDTRVAS-RAVRTFHGHEGDVNTVKFFPD--GNRFGTGSDDGTCRLFDIRTGH--QLQVYYQQHGENEIPHVTSIA 192 (267)
Q Consensus 118 ~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~v~~~~ 192 (267)
.|.||.-..+. ........|...|++++|.|. |-.|++++.||.|.|.+.+... ....+. ..+...+++++
T Consensus 81 kVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~----~aH~~GvnsVs 156 (299)
T KOG1332|consen 81 KVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIV----FAHEIGVNSVS 156 (299)
T ss_pred eEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhh----hccccccceee
Confidence 99999765332 123345678999999999884 6789999999999999987641 111122 22344689999
Q ss_pred EccC---C-----------CEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCC----CeEEEeECCCc
Q 024451 193 FSIS---G-----------RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADG----SALCTGSWDTN 254 (267)
Q Consensus 193 ~s~~---~-----------~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~----~~l~sgs~dg~ 254 (267)
|.|. | ..|++|+.|..|+||+..... ..+......|.+.|..++|.|.- .+||+||.||+
T Consensus 157 wapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~--w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~ 234 (299)
T KOG1332|consen 157 WAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS--WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGT 234 (299)
T ss_pred ecCcCCCccccccCcccccceeeccCCccceeeeecCCcc--hhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCc
Confidence 9886 4 469999999999999976542 11222236799999999999963 47999999999
Q ss_pred EEEEecC
Q 024451 255 LKIWAFG 261 (267)
Q Consensus 255 i~~w~~~ 261 (267)
+.||..+
T Consensus 235 viIwt~~ 241 (299)
T KOG1332|consen 235 VIIWTKD 241 (299)
T ss_pred EEEEEec
Confidence 9999754
No 132
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.91 E-value=4.1e-23 Score=169.45 Aligned_cols=250 Identities=19% Similarity=0.264 Sum_probs=170.8
Q ss_pred CceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451 1 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL 80 (267)
Q Consensus 1 ~~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 80 (267)
|++.|-|....|++++-|.+++.||+....- .-.+.+.||.+.|.++.|.|.+...+++|+.||.|.|||+....
T Consensus 104 fDl~wapge~~lVsasGDsT~r~Wdvk~s~l-----~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~ 178 (720)
T KOG0321|consen 104 FDLKWAPGESLLVSASGDSTIRPWDVKTSRL-----VGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNG 178 (720)
T ss_pred EeeccCCCceeEEEccCCceeeeeeecccee-----ecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccc
Confidence 4677889668899999999999999976331 11224789999999999999998899999999999999986321
Q ss_pred e-------EEEeCCc---------------cccCCccceEE---EEEeCCCCeEEEEecC-CCeEEEEeCCCcccc----
Q 024451 81 R-------TSVFGGE---------------FQSGHTADVLS---VSISGSNSRMFVSGSC-DSTARLWDTRVASRA---- 130 (267)
Q Consensus 81 ~-------~~~~~~~---------------~~~~~~~~i~~---~~~~~~~~~~~~s~~~-d~~i~iwd~~~~~~~---- 130 (267)
. ..+.... .-..+...|.+ +.+.. +...+++++. |+.|+|||++.....
T Consensus 179 ~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fk-De~tlaSaga~D~~iKVWDLRk~~~~~r~e 257 (720)
T KOG0321|consen 179 VDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFK-DESTLASAGAADSTIKVWDLRKNYTAYRQE 257 (720)
T ss_pred hhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEe-ccceeeeccCCCcceEEEeecccccccccC
Confidence 0 0000000 00134445544 44443 4456788776 999999999853221
Q ss_pred ---eEEeecc---ccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEE
Q 024451 131 ---VRTFHGH---EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY 204 (267)
Q Consensus 131 ---~~~~~~~---~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~ 204 (267)
...+.-| .-.+.++.....|.++.+.+.|+.|.+|++.+...-......+..+....+ .-..+|++.++++|+
T Consensus 258 p~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~v-ks~lSpd~~~l~SgS 336 (720)
T KOG0321|consen 258 PRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYV-KSELSPDDCSLLSGS 336 (720)
T ss_pred CCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeee-eeecCCCCceEeccC
Confidence 1122223 224667777777888888888999999999865432211111111111222 234689999999999
Q ss_pred eCCeEEEEeCCccceeeecccccCCccceEEEEEECCCC-CeEEEeECCCcEEEEec
Q 024451 205 SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADG-SALCTGSWDTNLKIWAF 260 (267)
Q Consensus 205 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~sgs~dg~i~~w~~ 260 (267)
.|...++|.+...+..... ...|...|++++|.|.. .-+|+++.|-++++|++
T Consensus 337 sd~~ayiw~vs~~e~~~~~---l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l 390 (720)
T KOG0321|consen 337 SDEQAYIWVVSSPEAPPAL---LLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRL 390 (720)
T ss_pred CCcceeeeeecCccCChhh---hhCcceEEEEEeeccccCCCceeeccCcceEEEec
Confidence 9999999997765543222 25788999999998742 23566699999999986
No 133
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.91 E-value=1.4e-22 Score=167.83 Aligned_cols=248 Identities=20% Similarity=0.254 Sum_probs=188.1
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
.+-|+|+++.+++-|.-|..++|.... ...........||.+.|..+.|.|.+ .+|++.|.|.+-|++-.-..+.
T Consensus 321 g~lw~~n~~~ii~~g~~Gg~hlWkt~d----~~~w~~~~~iSGH~~~V~dv~W~psG-eflLsvs~DQTTRlFa~wg~q~ 395 (764)
T KOG1063|consen 321 GGLWSPNSNVIIAHGRTGGFHLWKTKD----KTFWTQEPVISGHVDGVKDVDWDPSG-EFLLSVSLDQTTRLFARWGRQQ 395 (764)
T ss_pred eEEEcCCCCEEEEecccCcEEEEeccC----ccceeeccccccccccceeeeecCCC-CEEEEeccccceeeeccccccc
Confidence 467999999999999999999998322 22233455678999999999999976 4999999999999885541111
Q ss_pred E-EEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCc---------------------------------
Q 024451 82 T-SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA--------------------------------- 127 (267)
Q Consensus 82 ~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~--------------------------------- 127 (267)
. ..+. -.+-|.-++.|+++.+. ...|++|...+.+|+|+....
T Consensus 396 ~wHEia--RPQiHGyDl~c~~~vn~-~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnK 472 (764)
T KOG1063|consen 396 EWHEIA--RPQIHGYDLTCLSFVNE-DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNK 472 (764)
T ss_pred ceeeec--ccccccccceeeehccC-CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCC
Confidence 1 1111 12347778899998854 567899999999999975210
Q ss_pred ----------cc--------------------------------ceEEeeccccceeEEEEecCCCEEEEeeCCC-----
Q 024451 128 ----------SR--------------------------------AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG----- 160 (267)
Q Consensus 128 ----------~~--------------------------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~----- 160 (267)
.. .+..+-||...|++++.+|+++++|++++..
T Consensus 473 a~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehA 552 (764)
T KOG1063|consen 473 AFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHA 552 (764)
T ss_pred CCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccce
Confidence 00 0123458999999999999999999998654
Q ss_pred cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccce-eeecccccCCccceEEEEEE
Q 024451 161 TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV-VLNLGSLQNSHEGRITCLGL 239 (267)
Q Consensus 161 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~v~~~~~ 239 (267)
-|++|+..+-.....+. .+...|+.++|||++++|++.+.|+.+.+|..+.... ...+.. .+.|..-|+...|
T Consensus 553 vI~lw~t~~W~~~~~L~-----~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~-~k~HtRIIWdcsW 626 (764)
T KOG1063|consen 553 VIRLWNTANWLQVQELE-----GHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFAC-LKAHTRIIWDCSW 626 (764)
T ss_pred EEEEEeccchhhhheec-----ccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhcc-ccccceEEEEccc
Confidence 49999988766554332 2344699999999999999999999999998643221 222222 3679999999999
Q ss_pred CCCCCeEEEeECCCcEEEEecCce
Q 024451 240 SADGSALCTGSWDTNLKIWAFGGY 263 (267)
Q Consensus 240 ~p~~~~l~sgs~dg~i~~w~~~~~ 263 (267)
+|++.++|++|.|+.|++|.....
T Consensus 627 ~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 627 SPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred CcccceeEEecCCceEEEEeccCc
Confidence 999999999999999999986554
No 134
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.5e-22 Score=158.61 Aligned_cols=209 Identities=22% Similarity=0.299 Sum_probs=164.2
Q ss_pred cccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCe
Q 024451 39 SRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST 118 (267)
Q Consensus 39 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~ 118 (267)
..++..|+++|+.+.|++++ .+||||+.|.+..||++......... ....+|..+|..+.|+| +++++++++.|-.
T Consensus 217 ~qil~~htdEVWfl~FS~nG-kyLAsaSkD~Taiiw~v~~d~~~kl~--~tlvgh~~~V~yi~wSP-DdryLlaCg~~e~ 292 (519)
T KOG0293|consen 217 WQILQDHTDEVWFLQFSHNG-KYLASASKDSTAIIWIVVYDVHFKLK--KTLVGHSQPVSYIMWSP-DDRYLLACGFDEV 292 (519)
T ss_pred hhhHhhCCCcEEEEEEcCCC-eeEeeccCCceEEEEEEecCcceeee--eeeecccCceEEEEECC-CCCeEEecCchHh
Confidence 45688999999999999965 69999999999999988654432221 12247999999999997 5678899999999
Q ss_pred EEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCC
Q 024451 119 ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR 198 (267)
Q Consensus 119 i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 198 (267)
+++||+.++.....--.+|...+.+++|.|||..+++|+.|+++..||++. +.+..... -+.+.|.+++.++||.
T Consensus 293 ~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg-n~~~~W~g----vr~~~v~dlait~Dgk 367 (519)
T KOG0293|consen 293 LSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG-NILGNWEG----VRDPKVHDLAITYDGK 367 (519)
T ss_pred eeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCc-chhhcccc----cccceeEEEEEcCCCc
Confidence 999999765432222234557889999999999999999999999999974 33322211 1235799999999999
Q ss_pred EEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451 199 LLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG 261 (267)
Q Consensus 199 ~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~ 261 (267)
++++.+.|..+++|+.+....... ..-..+|++..+|.++++.++-=.+..+.+||+.
T Consensus 368 ~vl~v~~d~~i~l~~~e~~~dr~l-----ise~~~its~~iS~d~k~~LvnL~~qei~LWDl~ 425 (519)
T KOG0293|consen 368 YVLLVTVDKKIRLYNREARVDRGL-----ISEEQPITSFSISKDGKLALVNLQDQEIHLWDLE 425 (519)
T ss_pred EEEEEecccceeeechhhhhhhcc-----ccccCceeEEEEcCCCcEEEEEcccCeeEEeecc
Confidence 999999999999999765432211 1234589999999999999998899999999974
No 135
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.91 E-value=1.4e-22 Score=160.49 Aligned_cols=251 Identities=22% Similarity=0.291 Sum_probs=179.0
Q ss_pred ceeeCCCC--CeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCC
Q 024451 2 TCAFSPTG--QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG 79 (267)
Q Consensus 2 ~~~~~~~g--~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~ 79 (267)
+++|+|.. +++++|..-|+|-+||+...... .+-...+.+|..+|.++.|+|.+...+++.|.||+|++-|++..
T Consensus 191 ~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d---~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~ 267 (498)
T KOG4328|consen 191 SLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKD---KDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGN 267 (498)
T ss_pred EEEecccCcceEEEEccCCCcEEEEecCCCCCc---cCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecch
Confidence 67899866 58899999999999999632111 12234567899999999999998889999999999999998754
Q ss_pred eeEEE-----------------------eCC-----------------ccccCCccceEEEEEeCCCCeEEEEecCCCeE
Q 024451 80 LRTSV-----------------------FGG-----------------EFQSGHTADVLSVSISGSNSRMFVSGSCDSTA 119 (267)
Q Consensus 80 ~~~~~-----------------------~~~-----------------~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i 119 (267)
....+ +.. ....-|+..|.+++++|-...+++|++.|+++
T Consensus 268 i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~ 347 (498)
T KOG4328|consen 268 ISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTA 347 (498)
T ss_pred hhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcce
Confidence 21110 000 00124777999999999988999999999999
Q ss_pred EEEeCCCccc---ceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCC---CCeeeEEEEeecCCCCCCc--EEEE
Q 024451 120 RLWDTRVASR---AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR---TGHQLQVYYQQHGENEIPH--VTSI 191 (267)
Q Consensus 120 ~iwd~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~---~~~~~~~~~~~~~~~~~~~--v~~~ 191 (267)
+|||++.... +.-....|...|.++-|+|.+..+++.+.|..|+|||.. ..-+..... .|..-...+ ....
T Consensus 348 kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I-~Hn~~t~RwlT~fKA 426 (498)
T KOG4328|consen 348 KIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTI-PHNNRTGRWLTPFKA 426 (498)
T ss_pred eeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCcccee-eccCcccccccchhh
Confidence 9999985332 234455799999999999988779999999999999984 111111111 111111112 2345
Q ss_pred EEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEE-EEECCCCCeEEEe-ECCCcEEEEe
Q 024451 192 AFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITC-LGLSADGSALCTG-SWDTNLKIWA 259 (267)
Q Consensus 192 ~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~-~~~~p~~~~l~sg-s~dg~i~~w~ 259 (267)
.|.|+..++++|-.-..|-+||...++.+..+. ......|.+ .+|+|-+..+++| +..|.|.||.
T Consensus 427 ~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~---~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft 493 (498)
T KOG4328|consen 427 AWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELH---DPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFT 493 (498)
T ss_pred eeCCCccEEEEeccCcceeEEcCCCCEEeeecc---CccccccccceeecccccceeccCCccceEEEEe
Confidence 699999999999988999999988777665442 122223444 4889988855554 4467777774
No 136
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.91 E-value=2.1e-22 Score=167.54 Aligned_cols=242 Identities=17% Similarity=0.230 Sum_probs=185.7
Q ss_pred eEEEccCCCeEEEeecCCCCCCCC------------------C--------C----cccccccCCeeeEEEEEEecCCCe
Q 024451 11 SVACGGLDSVCSIFNLNSPTDKDG------------------N--------L----PVSRMLSGHKGYVSCCQYVPDEDT 60 (267)
Q Consensus 11 ~l~~~~~d~~v~~w~~~~~~~~~~------------------~--------~----~~~~~~~~h~~~v~~~~~~~~~~~ 60 (267)
.++|++.|++||+|+++...+..- . . +......+-+..+.+++.+|++ +
T Consensus 394 cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~g-q 472 (1080)
T KOG1408|consen 394 CFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDG-Q 472 (1080)
T ss_pred ceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCc-c
Confidence 388999999999999876221100 0 0 0111223445678999999965 7
Q ss_pred eEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCC--CCeEEEEecCCCeEEEEeCCCcccceEEeeccc
Q 024451 61 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS--NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE 138 (267)
Q Consensus 61 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 138 (267)
+|++|..-|++++|++........+ .+|+..|.++.++-+ ..+++++++.|..|.|+|+...-.++..+.+|.
T Consensus 473 hLAsGDr~GnlrVy~Lq~l~~~~~~-----eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HS 547 (1080)
T KOG1408|consen 473 HLASGDRGGNLRVYDLQELEYTCFM-----EAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHS 547 (1080)
T ss_pred eecccCccCceEEEEehhhhhhhhe-----ecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccc
Confidence 9999999999999999765433332 469999999999854 346889999999999999986666778889999
Q ss_pred cceeEEEEecCC--CEEEEeeCCCcEEEEeCCC-CeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCC
Q 024451 139 GDVNTVKFFPDG--NRFGTGSDDGTCRLFDIRT-GHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL 215 (267)
Q Consensus 139 ~~i~~~~~~~~~--~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~ 215 (267)
..|+++.|-.+| ..+++++.|+.|.+ +... ...-..+...+.......+..++..|+-.++++++.|+.|+|||.+
T Consensus 548 ssITsvKFa~~gln~~MiscGADksimF-r~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~ 626 (1080)
T KOG1408|consen 548 SSITSVKFACNGLNRKMISCGADKSIMF-RVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIE 626 (1080)
T ss_pred cceeEEEEeecCCceEEEeccCchhhhe-ehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEecc
Confidence 999999998776 67899999988764 4322 1112223333333344568889999999999999999999999999
Q ss_pred ccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451 216 LAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF 260 (267)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~ 260 (267)
.++....+... ..|++....+...|.|.|||+...|+++.++||
T Consensus 627 sgKq~k~FKgs-~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df 670 (1080)
T KOG1408|consen 627 SGKQVKSFKGS-RDHEGDLIKVILDPSGIYLATSCSDKTLCFVDF 670 (1080)
T ss_pred ccceeeeeccc-ccCCCceEEEEECCCccEEEEeecCCceEEEEe
Confidence 99888777554 357788888999999999999999999999997
No 137
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.90 E-value=3.4e-21 Score=154.54 Aligned_cols=235 Identities=20% Similarity=0.332 Sum_probs=174.3
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccC-CeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSG-HKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL 80 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 80 (267)
.+.|+|.+..|+...-.+.+..|++....- .+...++.. .+..|.|+.|.++++ +++|..+|.|.||+..+..
T Consensus 205 ~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l----~k~~~~fek~ekk~Vl~v~F~engd--viTgDS~G~i~Iw~~~~~~ 278 (626)
T KOG2106|consen 205 LATFHPTDPNLIITCGKGHLYFWTLRGGSL----VKRQGIFEKREKKFVLCVTFLENGD--VITGDSGGNILIWSKGTNR 278 (626)
T ss_pred EEEeccCCCcEEEEeCCceEEEEEccCCce----EEEeeccccccceEEEEEEEcCCCC--EEeecCCceEEEEeCCCce
Confidence 467999886666666677899998765321 112223332 247899999998764 8999999999999986543
Q ss_pred eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCccc-------------------------------
Q 024451 81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR------------------------------- 129 (267)
Q Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~------------------------------- 129 (267)
-... .. .|.+.|.+++... ++ .+++|+.|..|..||-.....
T Consensus 279 ~~k~----~~-aH~ggv~~L~~lr-~G-tllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~i 351 (626)
T KOG2106|consen 279 ISKQ----VH-AHDGGVFSLCMLR-DG-TLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFI 351 (626)
T ss_pred EEeE----ee-ecCCceEEEEEec-Cc-cEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceE
Confidence 2222 12 6999999998874 33 567899999999998321100
Q ss_pred --------ceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEE
Q 024451 130 --------AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLF 201 (267)
Q Consensus 130 --------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 201 (267)
.....++|......++.+|+.+++++++.|+.+++|+ ..+... .... ..+..++.|+|.| .++
T Consensus 352 L~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~w--t~~~----~d~~~~~~fhpsg-~va 422 (626)
T KOG2106|consen 352 LQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEW--TKII----EDPAECADFHPSG-VVA 422 (626)
T ss_pred EEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeE--EEEe----cCceeEeeccCcc-eEE
Confidence 0112357888888999999999999999999999999 333322 1111 1357899999999 999
Q ss_pred EEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCce
Q 024451 202 AGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGY 263 (267)
Q Consensus 202 ~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~ 263 (267)
.|+..|...+.|.++...+. ++.. ++++++++|+|+|.+||.||+|+.|.||.+..-
T Consensus 423 ~Gt~~G~w~V~d~e~~~lv~----~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~ 479 (626)
T KOG2106|consen 423 VGTATGRWFVLDTETQDLVT----IHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSAN 479 (626)
T ss_pred EeeccceEEEEecccceeEE----EEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCC
Confidence 99999999999988754442 2233 789999999999999999999999999987543
No 138
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=6.4e-22 Score=150.14 Aligned_cols=194 Identities=22% Similarity=0.366 Sum_probs=141.1
Q ss_pred eCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCC-CeeEEEeeCCCeEEEEeCCCCeeEE
Q 024451 5 FSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE-DTHLITSSGDQTCVLWDITTGLRTS 83 (267)
Q Consensus 5 ~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~s~~~d~~v~iwd~~~~~~~~ 83 (267)
..-+|.++++||.|.+|+|||+.... ....+..|.+.|+++.|.+.- ..+|++|+.||.|.+|+...=....
T Consensus 49 vAVs~~~~aSGssDetI~IYDm~k~~-------qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~ 121 (362)
T KOG0294|consen 49 LAVSGPYVASGSSDETIHIYDMRKRK-------QLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLK 121 (362)
T ss_pred EEecceeEeccCCCCcEEEEeccchh-------hhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEee
Confidence 44578999999999999999987632 345677899999999998642 2379999999999999987644443
Q ss_pred EeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccc----------------------------eEEee
Q 024451 84 VFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA----------------------------VRTFH 135 (267)
Q Consensus 84 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~----------------------------~~~~~ 135 (267)
.+ .+|...|+.++++|+ +++.++.+.|+.+++|++-.++.. +..++
T Consensus 122 sl-----K~H~~~Vt~lsiHPS-~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q 195 (362)
T KOG0294|consen 122 SL-----KAHKGQVTDLSIHPS-GKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQ 195 (362)
T ss_pred ee-----cccccccceeEecCC-CceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEe
Confidence 33 578889999999975 678899999999999997432110 00000
Q ss_pred ----------ccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEE--ccCCCEEEEE
Q 024451 136 ----------GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAF--SISGRLLFAG 203 (267)
Q Consensus 136 ----------~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~~g 203 (267)
.....+.++.|. ++.++++|+.|+.|++||.++......+..+ ...|..+.+ .|.+.+|++.
T Consensus 196 ~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH-----~~RVK~i~~~~~~~~~~lvTa 269 (362)
T KOG0294|consen 196 LDNASVFREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAH-----ENRVKDIASYTNPEHEYLVTA 269 (362)
T ss_pred cccHhHhhhhhccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecc-----hhheeeeEEEecCCceEEEEe
Confidence 001123444443 5667889999999999999875554443322 224666652 5678899999
Q ss_pred EeCCeEEEEeCCcc
Q 024451 204 YSNGDCYVWDTLLA 217 (267)
Q Consensus 204 ~~dg~i~i~d~~~~ 217 (267)
++||.|++||+...
T Consensus 270 SSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 270 SSDGFIKVWDIDME 283 (362)
T ss_pred ccCceEEEEEcccc
Confidence 99999999998665
No 139
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=6.2e-23 Score=166.25 Aligned_cols=248 Identities=20% Similarity=0.334 Sum_probs=175.3
Q ss_pred eeeCCCCCeEEEccCCCeEEEeecCCC-CCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCC--
Q 024451 3 CAFSPTGQSVACGGLDSVCSIFNLNSP-TDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG-- 79 (267)
Q Consensus 3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~-~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~-- 79 (267)
++|.|....|++++.|+++++|+++.. ...........++++|.++|-|+...+. ..++++|+.||+|+.|++...
T Consensus 300 l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n-~~~~ysgg~Dg~I~~w~~p~n~d 378 (577)
T KOG0642|consen 300 LAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSN-GEHCYSGGIDGTIRCWNLPPNQD 378 (577)
T ss_pred hhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCC-ceEEEeeccCceeeeeccCCCCC
Confidence 568888899999999999999999441 2233445567789999999999998775 468999999999999977521
Q ss_pred ----eeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEee---ccccceeEEEEecCC-C
Q 024451 80 ----LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH---GHEGDVNTVKFFPDG-N 151 (267)
Q Consensus 80 ----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~---~~~~~i~~~~~~~~~-~ 151 (267)
....++. ....||.+.+..+.+++... .+++++.||+++.|+..... + ..+. .|.. -.++++-... .
T Consensus 379 p~ds~dp~vl~-~~l~Ghtdavw~l~~s~~~~-~Llscs~DgTvr~w~~~~~~-~-~~f~~~~e~g~-Plsvd~~ss~~a 453 (577)
T KOG0642|consen 379 PDDSYDPSVLS-GTLLGHTDAVWLLALSSTKD-RLLSCSSDGTVRLWEPTEES-P-CTFGEPKEHGY-PLSVDRTSSRPA 453 (577)
T ss_pred cccccCcchhc-cceeccccceeeeeeccccc-ceeeecCCceEEeeccCCcC-c-cccCCccccCC-cceEeeccchhH
Confidence 1111222 22358999999999997654 47899999999999875322 2 2222 2221 2344443222 2
Q ss_pred EEEEeeCCCcEEEEeCCCCeeeEEEEeecC--CCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCC
Q 024451 152 RFGTGSDDGTCRLFDIRTGHQLQVYYQQHG--ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNS 229 (267)
Q Consensus 152 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~ 229 (267)
..++...-+.--+.+...++.+..+..... ......+..+.+.|.+.+.+++..|+.|+++|..+++.+..+ ..
T Consensus 454 ~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~----~a 529 (577)
T KOG0642|consen 454 HSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSM----VA 529 (577)
T ss_pred hhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchhe----ee
Confidence 333333333334444444444433322111 111235677888999999999999999999999888887665 46
Q ss_pred ccceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451 230 HEGRITCLGLSADGSALCTGSWDTNLKIWAF 260 (267)
Q Consensus 230 ~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~ 260 (267)
|...++++++.|+|.+|++++.||.+++|.+
T Consensus 530 ~~~svtslai~~ng~~l~s~s~d~sv~l~kl 560 (577)
T KOG0642|consen 530 HKDSVTSLAIDPNGPYLMSGSHDGSVRLWKL 560 (577)
T ss_pred ccceecceeecCCCceEEeecCCceeehhhc
Confidence 8899999999999999999999999999986
No 140
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.90 E-value=2.2e-22 Score=156.88 Aligned_cols=216 Identities=20% Similarity=0.286 Sum_probs=162.3
Q ss_pred cccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEe--CCccccCCccceEEEEEeCCCCeEEEEecCC
Q 024451 39 SRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVF--GGEFQSGHTADVLSVSISGSNSRMFVSGSCD 116 (267)
Q Consensus 39 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d 116 (267)
...+.||+++|-.++|.|.++..|||||+|.+|+||.+..+.....+ +.....+|...|-.+.|+|.-.+.+++++.|
T Consensus 74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D 153 (472)
T KOG0303|consen 74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD 153 (472)
T ss_pred CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCC
Confidence 34678999999999999999999999999999999999754321111 1122358999999999999888899999999
Q ss_pred CeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccC
Q 024451 117 STARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS 196 (267)
Q Consensus 117 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 196 (267)
.+|.+|++.++...+ .+. |.+.|.++.|+.+|.++++.+.|++|||||.++++.+..-..+ +......+.|-.+
T Consensus 154 n~v~iWnv~tgeali-~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~h----eG~k~~Raifl~~ 227 (472)
T KOG0303|consen 154 NTVSIWNVGTGEALI-TLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAH----EGAKPARAIFLAS 227 (472)
T ss_pred ceEEEEeccCCceee-ecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccc----cCCCcceeEEecc
Confidence 999999998655433 344 9999999999999999999999999999999998876543222 1223456678888
Q ss_pred CCEEEEEE---eCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeE-CCCcEEEEecCc
Q 024451 197 GRLLFAGY---SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGS-WDTNLKIWAFGG 262 (267)
Q Consensus 197 ~~~l~~g~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs-~dg~i~~w~~~~ 262 (267)
+.++.+|. +++++-+||.........+..+. ....|.--=+.||.+++..++ .|+.||-|-+..
T Consensus 228 g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD--tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~ 295 (472)
T KOG0303|consen 228 GKIFTTGFSRMSERQIALWDPNNLEEPIALQELD--TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITN 295 (472)
T ss_pred CceeeeccccccccceeccCcccccCcceeEEec--cCCceEEeeecCCCCEEEEEecCCcceEEEEecC
Confidence 88777775 46899999976544332222221 223344445678888776544 599999997644
No 141
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=6.1e-21 Score=157.75 Aligned_cols=241 Identities=18% Similarity=0.326 Sum_probs=183.9
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCC-eeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGH-KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL 80 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 80 (267)
++||+.+.+.||.+-.||.|.+|++...- -+...+.++ .+.|-+++|.+. ..|+|.+.+|+|.-||+.+.+
T Consensus 30 slA~s~kS~~lAvsRt~g~IEiwN~~~~w------~~~~vi~g~~drsIE~L~W~e~--~RLFS~g~sg~i~EwDl~~lk 101 (691)
T KOG2048|consen 30 SLAYSHKSNQLAVSRTDGNIEIWNLSNNW------FLEPVIHGPEDRSIESLAWAEG--GRLFSSGLSGSITEWDLHTLK 101 (691)
T ss_pred EEEEeccCCceeeeccCCcEEEEccCCCc------eeeEEEecCCCCceeeEEEccC--CeEEeecCCceEEEEecccCc
Confidence 68999999999999999999999986521 123344444 467899999853 469999999999999999987
Q ss_pred eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccc-eEEeeccccceeEEEEecCCCEEEEeeCC
Q 024451 81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA-VRTFHGHEGDVNTVKFFPDGNRFGTGSDD 159 (267)
Q Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 159 (267)
+...+. .-...|.+++.+|.+ ..++.|+.||.+.+++.....-. .+.+.--.+.+.++.|+|++..+++|+.|
T Consensus 102 ~~~~~d-----~~gg~IWsiai~p~~-~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~D 175 (691)
T KOG2048|consen 102 QKYNID-----SNGGAIWSIAINPEN-TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSID 175 (691)
T ss_pred eeEEec-----CCCcceeEEEeCCcc-ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccC
Confidence 766553 345689999999765 46778899998888876532211 12232235789999999999999999999
Q ss_pred CcEEEEeCCCCeeeEEEEeec---CCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEE
Q 024451 160 GTCRLFDIRTGHQLQVYYQQH---GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITC 236 (267)
Q Consensus 160 ~~i~iwd~~~~~~~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~ 236 (267)
|-|++||..+++.+....-.. ...+..-|.++.|- ....|++|.+.|.|.+||...+..+... ..|.+.|.+
T Consensus 176 g~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L-rd~tI~sgDS~G~V~FWd~~~gTLiqS~----~~h~adVl~ 250 (691)
T KOG2048|consen 176 GVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL-RDSTIASGDSAGTVTFWDSIFGTLIQSH----SCHDADVLA 250 (691)
T ss_pred ceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEe-ecCcEEEecCCceEEEEcccCcchhhhh----hhhhcceeE
Confidence 999999999887665221111 11122346677665 4468999999999999998887766544 568899999
Q ss_pred EEECCCCCeEEEeECCCcEEEEecC
Q 024451 237 LGLSADGSALCTGSWDTNLKIWAFG 261 (267)
Q Consensus 237 ~~~~p~~~~l~sgs~dg~i~~w~~~ 261 (267)
++.++++..+.+++.|+.|.-|...
T Consensus 251 Lav~~~~d~vfsaGvd~~ii~~~~~ 275 (691)
T KOG2048|consen 251 LAVADNEDRVFSAGVDPKIIQYSLT 275 (691)
T ss_pred EEEcCCCCeEEEccCCCceEEEEec
Confidence 9999999999999999999888653
No 142
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.90 E-value=1.5e-21 Score=148.70 Aligned_cols=248 Identities=22% Similarity=0.339 Sum_probs=171.7
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCC---C--Ccc---cccccCCeeeEEEEEEec------CCCeeEEEeeC
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDG---N--LPV---SRMLSGHKGYVSCCQYVP------DEDTHLITSSG 67 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~---~--~~~---~~~~~~h~~~v~~~~~~~------~~~~~l~s~~~ 67 (267)
.|.|+|||..|++-+.|..+++|++.......+ . .+. .+...| .-|+...|-+ .+..++++.+.
T Consensus 54 gckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg--~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 54 GCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEG--ETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred cceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccC--CEEEEEEeeeccccCCCccceeeeccc
Confidence 378999999999999999999999876432221 1 111 111122 3355555531 13468888999
Q ss_pred CCeEEEEeCCCCeeEEEeCCccccCCcc---ceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceE--Ee-----ecc
Q 024451 68 DQTCVLWDITTGLRTSVFGGEFQSGHTA---DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVR--TF-----HGH 137 (267)
Q Consensus 68 d~~v~iwd~~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~--~~-----~~~ 137 (267)
|..|++||.-+++....+.+. .|.+ ...++.|++...++ -++....|++||+..+..... .. .+-
T Consensus 132 ~~PIh~wdaftG~lraSy~~y---dh~de~taAhsL~Fs~DGeql--faGykrcirvFdt~RpGr~c~vy~t~~~~k~gq 206 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAY---DHQDEYTAAHSLQFSPDGEQL--FAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQ 206 (406)
T ss_pred cCceeeeeccccccccchhhh---hhHHhhhhheeEEecCCCCeE--eecccceEEEeeccCCCCCCcchhhhhcccccc
Confidence 999999999999877666432 2333 34689999765543 367788999999843332211 11 123
Q ss_pred ccceeEEEEec-CCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEe-CCeEEEEeCC
Q 024451 138 EGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS-NGDCYVWDTL 215 (267)
Q Consensus 138 ~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~-dg~i~i~d~~ 215 (267)
.+.+.+++|+| +.+.++.++-...+-|+.-.....+..+. ++...|+.++|.++|+.|++|.. +-.|..||++
T Consensus 207 ~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llg-----gh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR 281 (406)
T KOG2919|consen 207 KGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLG-----GHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIR 281 (406)
T ss_pred cceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeec-----ccCCCeeeEEeccCcCeecccccCCCeEEEEeeh
Confidence 56789999999 45689999988888888877666655543 23457999999999999999984 6789999987
Q ss_pred ccce-eeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451 216 LAKV-VLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 216 ~~~~-~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~ 262 (267)
..+. +..+.+-....+.+|. ....|.+++|++|+.||.|++|++.+
T Consensus 282 ~~~~pv~~L~rhv~~TNQRI~-FDld~~~~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 282 YSRDPVYALERHVGDTNQRIL-FDLDPKGEILASGDTDGSVRVWDLKD 328 (406)
T ss_pred hccchhhhhhhhccCccceEE-EecCCCCceeeccCCCccEEEEecCC
Confidence 6443 2223221111334443 56679999999999999999999754
No 143
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=2.7e-21 Score=146.38 Aligned_cols=219 Identities=20% Similarity=0.293 Sum_probs=154.4
Q ss_pred ccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCC-CCeEEEEecCCCeEE
Q 024451 42 LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS-NSRMFVSGSCDSTAR 120 (267)
Q Consensus 42 ~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~s~~~d~~i~ 120 (267)
..+|.+-|+++.|.+.+ +.+++|+.|++|+|||.+...........+ ..|.+.|..+.|.++ .++.+++++.|++++
T Consensus 9 ~s~h~DlihdVs~D~~G-RRmAtCSsDq~vkI~d~~~~s~~W~~Ts~W-rah~~Si~rV~WAhPEfGqvvA~cS~Drtv~ 86 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYG-RRMATCSSDQTVKIWDSTSDSGTWSCTSSW-RAHDGSIWRVVWAHPEFGQVVATCSYDRTVS 86 (361)
T ss_pred ccCCcceeeeeeecccC-ceeeeccCCCcEEEEeccCCCCceEEeeeE-EecCCcEEEEEecCccccceEEEEecCCcee
Confidence 46899999999999976 579999999999999975442222111122 368999999998754 578899999999999
Q ss_pred EEeCCCc--c------cceEEeeccccceeEEEEecC--CCEEEEeeCCCcEEEEeCCCCeeeEEEEeecC--------C
Q 024451 121 LWDTRVA--S------RAVRTFHGHEGDVNTVKFFPD--GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG--------E 182 (267)
Q Consensus 121 iwd~~~~--~------~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--------~ 182 (267)
||.-... . .....+....+.|..+.|.|. |-.+|+++.||.+|||+.-..-.+....-.+. .
T Consensus 87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~ 166 (361)
T KOG2445|consen 87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG 166 (361)
T ss_pred eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence 9975211 0 013345566788999999995 66899999999999999654322211111110 1
Q ss_pred CCCCcEEEEEEccC---CCEEEEEEeC-----CeEEEEeCCccc-eeeecccccCCccceEEEEEECCC----CCeEEEe
Q 024451 183 NEIPHVTSIAFSIS---GRLLFAGYSN-----GDCYVWDTLLAK-VVLNLGSLQNSHEGRITCLGLSAD----GSALCTG 249 (267)
Q Consensus 183 ~~~~~v~~~~~s~~---~~~l~~g~~d-----g~i~i~d~~~~~-~~~~~~~~~~~~~~~v~~~~~~p~----~~~l~sg 249 (267)
.......++.|+|. .++|++|+.+ +.++||...... .-.....+ ..|..+|+.++|.|+ ...||++
T Consensus 167 ~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L-~d~~dpI~di~wAPn~Gr~y~~lAvA 245 (361)
T KOG2445|consen 167 KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAEL-PDHTDPIRDISWAPNIGRSYHLLAVA 245 (361)
T ss_pred cccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhc-CCCCCcceeeeeccccCCceeeEEEe
Confidence 12234678888864 4578888765 478888643322 23333344 379999999999997 3479999
Q ss_pred ECCCcEEEEecCceE
Q 024451 250 SWDTNLKIWAFGGYR 264 (267)
Q Consensus 250 s~dg~i~~w~~~~~~ 264 (267)
+.|| |+||.+...+
T Consensus 246 ~kDg-v~I~~v~~~~ 259 (361)
T KOG2445|consen 246 TKDG-VRIFKVKVAR 259 (361)
T ss_pred ecCc-EEEEEEeecc
Confidence 9999 9999987543
No 144
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.1e-21 Score=149.35 Aligned_cols=211 Identities=21% Similarity=0.267 Sum_probs=148.6
Q ss_pred ccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee--EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCC
Q 024451 40 RMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR--TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS 117 (267)
Q Consensus 40 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~ 117 (267)
..+++|.+.|+++.|+.++ .+|++++.|++|++|++..=.. -..+......+| .+.+.|.|.-..++++.-...
T Consensus 80 ~~LKgH~~~vt~~~FsSdG-K~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dh---pT~V~FapDc~s~vv~~~~g~ 155 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDG-KKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDH---PTRVVFAPDCKSVVVSVKRGN 155 (420)
T ss_pred hhhhccCCceeeeEEcCCC-ceeEEEeCCceEEEEecchhhhhhhhHhhccccCCC---ceEEEECCCcceEEEEEccCC
Confidence 4689999999999999876 5899999999999999864110 001111122233 456778776666777777777
Q ss_pred eEEEEeCCCc---ccc-----eE---EeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCC
Q 024451 118 TARLWDTRVA---SRA-----VR---TFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIP 186 (267)
Q Consensus 118 ~i~iwd~~~~---~~~-----~~---~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 186 (267)
++++|.+... ... +. ...-|...+-.+.....++++++++.|.+|.+||++ |+.+..+-.. ..
T Consensus 156 ~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtn-----q~ 229 (420)
T KOG2096|consen 156 KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTN-----QS 229 (420)
T ss_pred EEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccc-----cc
Confidence 8999965311 111 11 112344556666666678999999999999999998 6665543221 12
Q ss_pred cEEEEEEccCCCEEEEEEeCCeEEEEeCCccc-----eeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451 187 HVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK-----VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG 261 (267)
Q Consensus 187 ~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~-----~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~ 261 (267)
.....+.||+|+++++++-.-.+++|..--.+ .+..... .++|.+.|..++|+|+.+.+++.|.||+++||+.+
T Consensus 230 ~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~-LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 230 SNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFS-LKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred cccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhhe-eccchhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence 34566789999999998888889999852211 1111112 26899999999999999999999999999999863
No 145
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=5.2e-22 Score=156.71 Aligned_cols=197 Identities=19% Similarity=0.256 Sum_probs=152.9
Q ss_pred CCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCc
Q 024451 9 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE 88 (267)
Q Consensus 9 g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~ 88 (267)
-+.|++||.|.+|++||+.... +..++.-|.+.|.++.|+|....+|++|+.|++|++.|.+...... ..
T Consensus 256 ~nVLaSgsaD~TV~lWD~~~g~-------p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~---~~ 325 (463)
T KOG0270|consen 256 RNVLASGSADKTVKLWDVDTGK-------PKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSG---KE 325 (463)
T ss_pred ceeEEecCCCceEEEEEcCCCC-------cceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccC---ce
Confidence 3689999999999999998643 5667778999999999999999999999999999999997421110 01
Q ss_pred cccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecC-CCEEEEeeCCCcEEEEeC
Q 024451 89 FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD-GNRFGTGSDDGTCRLFDI 167 (267)
Q Consensus 89 ~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~iwd~ 167 (267)
..-.+.|-.+.|.+.....++++..||.|+-+|+|...+++..+++|.++|.++.+++. ...+++++.|+.+++|++
T Consensus 326 --wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~ 403 (463)
T KOG0270|consen 326 --WKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKF 403 (463)
T ss_pred --EEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEee
Confidence 12345678889998888889999999999999999888899999999999999999875 457899999999999998
Q ss_pred CCCeeeEEEEeecCCCCCCcEEEEEEccCCC-EEEEEEeCCeEEEEeCCcccee
Q 024451 168 RTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAKVV 220 (267)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~g~~dg~i~i~d~~~~~~~ 220 (267)
...+.... .. + ....+...|.++.|+-. +++.|+..+.+++||..+...+
T Consensus 404 ~~~~~~~v-~~-~-~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 404 DVDSPKSV-KE-H-SFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred cCCCCccc-cc-c-cccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 75433211 11 1 11122345556666654 5677888889999998765544
No 146
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.89 E-value=3.9e-23 Score=159.40 Aligned_cols=160 Identities=23% Similarity=0.425 Sum_probs=134.5
Q ss_pred CeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeC
Q 024451 45 HKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDT 124 (267)
Q Consensus 45 h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~ 124 (267)
..+.|.++.|+|-+...|++|+.|++|.+||+.+...+.-.. -.-..+.++|+| +...|.+++.|..+..+|+
T Consensus 186 G~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi------~~mRTN~IswnP-eafnF~~a~ED~nlY~~Dm 258 (433)
T KOG0268|consen 186 GADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI------LTMRTNTICWNP-EAFNFVAANEDHNLYTYDM 258 (433)
T ss_pred CCCceeEEecCCCcchheeeeccCCceEEEecccCCccceee------eeccccceecCc-cccceeeccccccceehhh
Confidence 346789999999988889999999999999998775543321 123457889998 7778899999999999999
Q ss_pred CCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEE
Q 024451 125 RVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY 204 (267)
Q Consensus 125 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~ 204 (267)
+....++..+.+|...|.+++|+|.|+-|++||-|++||||..+.+.....+.. .....|.++.||.|.+++++|+
T Consensus 259 R~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht----kRMq~V~~Vk~S~Dskyi~SGS 334 (433)
T KOG0268|consen 259 RNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT----KRMQHVFCVKYSMDSKYIISGS 334 (433)
T ss_pred hhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhH----hhhheeeEEEEeccccEEEecC
Confidence 987788888999999999999999999999999999999999987654443322 2345699999999999999999
Q ss_pred eCCeEEEEeCC
Q 024451 205 SNGDCYVWDTL 215 (267)
Q Consensus 205 ~dg~i~i~d~~ 215 (267)
.|+.|++|...
T Consensus 335 dd~nvRlWka~ 345 (433)
T KOG0268|consen 335 DDGNVRLWKAK 345 (433)
T ss_pred CCcceeeeecc
Confidence 99999999864
No 147
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=3.8e-21 Score=152.71 Aligned_cols=224 Identities=23% Similarity=0.355 Sum_probs=168.0
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCC---
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT--- 78 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~--- 78 (267)
+++-+|.|.+|+.|+.-|.+.+|.+... .+...+.+|-..|+|+.|+.++ .+++|||.||.|.+|.+..
T Consensus 86 al~s~n~G~~l~ag~i~g~lYlWelssG-------~LL~v~~aHYQ~ITcL~fs~dg-s~iiTgskDg~V~vW~l~~lv~ 157 (476)
T KOG0646|consen 86 ALASSNLGYFLLAGTISGNLYLWELSSG-------ILLNVLSAHYQSITCLKFSDDG-SHIITGSKDGAVLVWLLTDLVS 157 (476)
T ss_pred eeecCCCceEEEeecccCcEEEEEeccc-------cHHHHHHhhccceeEEEEeCCC-cEEEecCCCccEEEEEEEeecc
Confidence 5667899999999989999999998753 3566778999999999999865 6899999999999997742
Q ss_pred ------CeeEEEeCCccccCCccceEEEEEeCC-CCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCC
Q 024451 79 ------GLRTSVFGGEFQSGHTADVLSVSISGS-NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN 151 (267)
Q Consensus 79 ------~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 151 (267)
..+...+ ..|.-.|..+.+... ....++|++.|.++|+||+.... .+..+. -...+.+++.+|.+.
T Consensus 158 a~~~~~~~p~~~f-----~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~-LLlti~-fp~si~av~lDpae~ 230 (476)
T KOG0646|consen 158 ADNDHSVKPLHIF-----SDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV-LLLTIT-FPSSIKAVALDPAER 230 (476)
T ss_pred cccCCCccceeee-----ccCcceeEEEEecCCCccceEEEecCCceEEEEEeccce-eeEEEe-cCCcceeEEEccccc
Confidence 1222222 478889998887643 34567899999999999997543 333332 346789999999999
Q ss_pred EEEEeeCCCcEEEEeCCCCe--eeEE-----------EEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccc
Q 024451 152 RFGTGSDDGTCRLFDIRTGH--QLQV-----------YYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK 218 (267)
Q Consensus 152 ~l~~~~~d~~i~iwd~~~~~--~~~~-----------~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~ 218 (267)
.+.+|+++|.|.+.++.... .... +....+......|++++.+.||..|++|+.||.+.+||.....
T Consensus 231 ~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q 310 (476)
T KOG0646|consen 231 VVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQ 310 (476)
T ss_pred EEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHH
Confidence 99999999999998875422 1100 0000011122479999999999999999999999999998776
Q ss_pred eeeecccccCCccceEEEEEECCCCC
Q 024451 219 VVLNLGSLQNSHEGRITCLGLSADGS 244 (267)
Q Consensus 219 ~~~~~~~~~~~~~~~v~~~~~~p~~~ 244 (267)
.+.... .-.++|+.+.+.|-.+
T Consensus 311 ~iRtl~----~~kgpVtnL~i~~~~~ 332 (476)
T KOG0646|consen 311 CIRTLQ----TSKGPVTNLQINPLER 332 (476)
T ss_pred HHHHHh----hhccccceeEeecccc
Confidence 665442 1457888888866433
No 148
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=6.9e-20 Score=147.40 Aligned_cols=232 Identities=13% Similarity=0.146 Sum_probs=157.4
Q ss_pred CCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCc
Q 024451 9 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE 88 (267)
Q Consensus 9 g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~ 88 (267)
++++++++.|+.+++||+.... ....+..|.. +.++.|+|++...+++++.++.|++||..++.....+.
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~-------~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-- 70 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLE-------VTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP-- 70 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCc-------eEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc--
Confidence 4678999999999999986421 3344444433 56789999876545677889999999998876554432
Q ss_pred cccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCC-cEEEEeC
Q 024451 89 FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG-TCRLFDI 167 (267)
Q Consensus 89 ~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-~i~iwd~ 167 (267)
.+ ..+..+.+++....++++++.++.+++||++. ...+..+. +...+.++.|+|+++.++++..++ .+.+||.
T Consensus 71 ---~~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~-~~~~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~ 144 (300)
T TIGR03866 71 ---SG-PDPELFALHPNGKILYIANEDDNLVTVIDIET-RKVLAEIP-VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDT 144 (300)
T ss_pred ---CC-CCccEEEECCCCCEEEEEcCCCCeEEEEECCC-CeEEeEee-CCCCcceEEECCCCCEEEEEecCCCeEEEEeC
Confidence 12 22456778876555666667789999999874 33444443 223468899999999999888765 5677898
Q ss_pred CCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEE-eCCeEEEEeCCccceeeecccc-cCCccc--eEEEEEECCCC
Q 024451 168 RTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLLAKVVLNLGSL-QNSHEG--RITCLGLSADG 243 (267)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~-~dg~i~i~d~~~~~~~~~~~~~-~~~~~~--~v~~~~~~p~~ 243 (267)
++++........ ..+..++|+++++++++++ .++.+++||+.+.+.+..+... ...+.. ....++|+|++
T Consensus 145 ~~~~~~~~~~~~------~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg 218 (300)
T TIGR03866 145 KTYEIVDNVLVD------QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDG 218 (300)
T ss_pred CCCeEEEEEEcC------CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCC
Confidence 876654332211 1246789999999886554 6899999999877654433110 001111 23468899999
Q ss_pred CeEEE-eECCCcEEEEecCc
Q 024451 244 SALCT-GSWDTNLKIWAFGG 262 (267)
Q Consensus 244 ~~l~s-gs~dg~i~~w~~~~ 262 (267)
++++. .+.++.+.+|+...
T Consensus 219 ~~~~~~~~~~~~i~v~d~~~ 238 (300)
T TIGR03866 219 KTAFVALGPANRVAVVDAKT 238 (300)
T ss_pred CEEEEEcCCCCeEEEEECCC
Confidence 98544 44567899998754
No 149
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.89 E-value=1.6e-21 Score=152.49 Aligned_cols=254 Identities=24% Similarity=0.330 Sum_probs=175.8
Q ss_pred ceeeCCCCC-eEEEccCCCeEEEeecCCCCCCCC--CCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCC-
Q 024451 2 TCAFSPTGQ-SVACGGLDSVCSIFNLNSPTDKDG--NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT- 77 (267)
Q Consensus 2 ~~~~~~~g~-~l~~~~~d~~v~~w~~~~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~- 77 (267)
.+.|.+.+. .|+|||.|..+++|.+.......+ .+.....+..|...|++|+|+|++ ..|+||+.+|.|.+|...
T Consensus 18 s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~g-elLASg~D~g~v~lWk~~~ 96 (434)
T KOG1009|consen 18 SVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDG-ELLASGGDGGEVFLWKQGD 96 (434)
T ss_pred EEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCc-CeeeecCCCceEEEEEecC
Confidence 345666554 999999999999999876544443 445566789999999999999976 589999999999999765
Q ss_pred -------CCe---eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEe
Q 024451 78 -------TGL---RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFF 147 (267)
Q Consensus 78 -------~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~ 147 (267)
+.. +..-.......+|.+.+..++|++ +++.+++++.|..+++||+..+ .....+.+|..-+..++|.
T Consensus 97 ~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G-~l~~~~~dh~~yvqgvawD 174 (434)
T KOG1009|consen 97 VRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAG-QLLAILDDHEHYVQGVAWD 174 (434)
T ss_pred cCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEeccc-eeEeeccccccccceeecc
Confidence 200 000000112346899999999996 5678899999999999999854 4677888999999999999
Q ss_pred cCCCEEEEeeCCCcEEEEeCCCCeeeEEEE----e--e--cC----------CCCCCcEEEEEEccCCCEEEEEE-----
Q 024451 148 PDGNRFGTGSDDGTCRLFDIRTGHQLQVYY----Q--Q--HG----------ENEIPHVTSIAFSISGRLLFAGY----- 204 (267)
Q Consensus 148 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~----~--~--~~----------~~~~~~v~~~~~s~~~~~l~~g~----- 204 (267)
|-++++++-+.|...+.+.....+...... . . +. .........++|+|+|..+++..
T Consensus 175 pl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~ 254 (434)
T KOG1009|consen 175 PLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKV 254 (434)
T ss_pred hhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeee
Confidence 999999999999877777765433222111 0 0 00 00011233456666666655532
Q ss_pred ----------------------------------------------------------------eCCeEEEEeCCcccee
Q 024451 205 ----------------------------------------------------------------SNGDCYVWDTLLAKVV 220 (267)
Q Consensus 205 ----------------------------------------------------------------~dg~i~i~d~~~~~~~ 220 (267)
....|++||.++.+++
T Consensus 255 g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~ 334 (434)
T KOG1009|consen 255 GGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPL 334 (434)
T ss_pred CCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccccccce
Confidence 1122333333322222
Q ss_pred eecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451 221 LNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG 261 (267)
Q Consensus 221 ~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~ 261 (267)
.- ....|..+|+.++|++||.+|+..|.||.+.+-.|.
T Consensus 335 ~~---v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe 372 (434)
T KOG1009|consen 335 AV---VDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFE 372 (434)
T ss_pred EE---EeeeeeeeecceeecCCCcEEEEeccCCceEEEEEc
Confidence 11 123488899999999999999999999998876653
No 150
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.88 E-value=1.1e-20 Score=159.60 Aligned_cols=247 Identities=21% Similarity=0.327 Sum_probs=183.3
Q ss_pred ceeeCCCC-CeEEEccCCCeEEEeecCCCCCCCCCCcccc-cccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCC
Q 024451 2 TCAFSPTG-QSVACGGLDSVCSIFNLNSPTDKDGNLPVSR-MLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG 79 (267)
Q Consensus 2 ~~~~~~~g-~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~ 79 (267)
+|+|..|| .++++|+..|.+.+||++... +.- ....|.+.|....|.|. ...+++++.|+++++|=.+++
T Consensus 249 slSFrtDG~p~las~~~~G~m~~wDLe~kk-------l~~v~~nah~~sv~~~~fl~~-epVl~ta~~DnSlk~~vfD~~ 320 (910)
T KOG1539|consen 249 SLSFRTDGNPLLASGRSNGDMAFWDLEKKK-------LINVTRNAHYGSVTGATFLPG-EPVLVTAGADNSLKVWVFDSG 320 (910)
T ss_pred EEEeccCCCeeEEeccCCceEEEEEcCCCe-------eeeeeeccccCCcccceecCC-CceEeeccCCCceeEEEeeCC
Confidence 57899899 567788888999999997632 222 33478888999999884 568999999999999955543
Q ss_pred eeE-EEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcc------------------------------
Q 024451 80 LRT-SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS------------------------------ 128 (267)
Q Consensus 80 ~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~------------------------------ 128 (267)
.-. ..+ +.-.||..+..++.+-..+++.+++++.|++.+.+++....
T Consensus 321 dg~pR~L--R~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i 398 (910)
T KOG1539|consen 321 DGVPRLL--RSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPI 398 (910)
T ss_pred CCcchhe--eeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcc
Confidence 211 111 22358999999999988888889999999988888642100
Q ss_pred ---------------------------------cce-EEeeccc------cceeEEEEecCCCEEEEeeCCCcEEEEeCC
Q 024451 129 ---------------------------------RAV-RTFHGHE------GDVNTVKFFPDGNRFGTGSDDGTCRLFDIR 168 (267)
Q Consensus 129 ---------------------------------~~~-~~~~~~~------~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~ 168 (267)
+.. +....+. ..+.+++.+++|++.+.|...|.|-+|++.
T Consensus 399 ~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQ 478 (910)
T KOG1539|consen 399 VEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQ 478 (910)
T ss_pred eeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcc
Confidence 000 0111122 457788999999999999999999999999
Q ss_pred CCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeee--------------------------
Q 024451 169 TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLN-------------------------- 222 (267)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~-------------------------- 222 (267)
+|-....+.+ ...+..+|..++.+..++.+++++.+|.+.+||.........
T Consensus 479 SGi~r~sf~~--~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf 556 (910)
T KOG1539|consen 479 SGIHRKSFGD--SPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDF 556 (910)
T ss_pred cCeeeccccc--CccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCce
Confidence 8865544421 123456799999999999999999999999999754331110
Q ss_pred -----------cccccCCccceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451 223 -----------LGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF 260 (267)
Q Consensus 223 -----------~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~ 260 (267)
+.+...+|...|+.++|||||++|++++.|++|++||+
T Consensus 557 ~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDl 605 (910)
T KOG1539|consen 557 SIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDL 605 (910)
T ss_pred eEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEec
Confidence 01112358999999999999999999999999999997
No 151
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=4.7e-21 Score=146.88 Aligned_cols=237 Identities=19% Similarity=0.323 Sum_probs=163.0
Q ss_pred CeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecC-CCeeEEEeeCCCeEEEEeCCCCeeEEEeCCc
Q 024451 10 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD-EDTHLITSSGDQTCVLWDITTGLRTSVFGGE 88 (267)
Q Consensus 10 ~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~ 88 (267)
+.++++...|+|++||.... ...+.+++|...+.-++|... ....+.+|+.||+||+||+++..+...+...
T Consensus 41 ~~vav~lSngsv~lyd~~tg-------~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~ 113 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTG-------QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWT 113 (376)
T ss_pred eeEEEEecCCeEEEEeccch-------hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheecc
Confidence 45888899999999997652 256677888888888888764 3346889999999999999887655444321
Q ss_pred cccCCc-cceEEEEEeCCCCeEEEEec----CCCeEEEEeCCCcccceEEe-eccccceeEEEEec-CCCEEEEeeCCCc
Q 024451 89 FQSGHT-ADVLSVSISGSNSRMFVSGS----CDSTARLWDTRVASRAVRTF-HGHEGDVNTVKFFP-DGNRFGTGSDDGT 161 (267)
Q Consensus 89 ~~~~~~-~~i~~~~~~~~~~~~~~s~~----~d~~i~iwd~~~~~~~~~~~-~~~~~~i~~~~~~~-~~~~l~~~~~d~~ 161 (267)
++. ....+++..- ..+++++|. .+-.|.+||+|...++++.+ ..|.+.|+++.|+| +.+.|++|+.||-
T Consensus 114 ---~~~~~~f~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGL 189 (376)
T KOG1188|consen 114 ---QQSGTPFICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGL 189 (376)
T ss_pred ---CCCCCcceEeeccC-cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccce
Confidence 233 3344554432 455666653 46689999999766645554 57999999999999 4689999999999
Q ss_pred EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCC-CEEEEEEeCCeEEEEeCCcccee--------------------
Q 024451 162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG-RLLFAGYSNGDCYVWDTLLAKVV-------------------- 220 (267)
Q Consensus 162 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~g~~dg~i~i~d~~~~~~~-------------------- 220 (267)
|.+||++...+...+. +..+....|..+.|..++ ..|.+-+..+...+|++..+...
T Consensus 190 vnlfD~~~d~EeDaL~--~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~d 267 (376)
T KOG1188|consen 190 VNLFDTKKDNEEDALL--HVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCD 267 (376)
T ss_pred EEeeecCCCcchhhHH--HhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhh
Confidence 9999997543221111 112333447777777665 34556666777777765322100
Q ss_pred --------------------------------------eecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEe
Q 024451 221 --------------------------------------LNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWA 259 (267)
Q Consensus 221 --------------------------------------~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~ 259 (267)
.....++..|..-|.++.|.-.+.++.||+.||.+.+|.
T Consensus 268 Y~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk 344 (376)
T KOG1188|consen 268 YVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWK 344 (376)
T ss_pred heeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEe
Confidence 011122334566677788877788999999999999998
No 152
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1.1e-19 Score=133.72 Aligned_cols=245 Identities=16% Similarity=0.233 Sum_probs=171.5
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCC----CCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCC
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPT----DKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT 77 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~----~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~ 77 (267)
+-+++|.+++|+.|..+|+|.+..+..-. +..++.+ .-..++|.++|+.++|.. .+|++|+ ||.|+=|..+
T Consensus 15 ~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~-iv~eqahdgpiy~~~f~d---~~Lls~g-dG~V~gw~W~ 89 (325)
T KOG0649|consen 15 AQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLK-IVPEQAHDGPIYYLAFHD---DFLLSGG-DGLVYGWEWN 89 (325)
T ss_pred HHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcc-eeeccccCCCeeeeeeeh---hheeecc-CceEEEeeeh
Confidence 34689999999999999999999986532 2233333 234589999999999973 4677665 5999988765
Q ss_pred CCeeE--------EEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecC
Q 024451 78 TGLRT--------SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD 149 (267)
Q Consensus 78 ~~~~~--------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~ 149 (267)
..... ...+.+....--..|+++.+.|..+.++ .++.|+.++-||++. .+..+.+++|.+-++++.-...
T Consensus 90 E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~-~AgGD~~~y~~dlE~-G~i~r~~rGHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 90 EEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSIL-FAGGDGVIYQVDLED-GRIQREYRGHTDYVHSVVGRNA 167 (325)
T ss_pred hhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEE-EecCCeEEEEEEecC-CEEEEEEcCCcceeeeeeeccc
Confidence 32210 0111111011234688888887776654 556899999999985 4567889999999999998666
Q ss_pred CCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCC-----CCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecc
Q 024451 150 GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGEN-----EIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLG 224 (267)
Q Consensus 150 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~ 224 (267)
...+.+|++||++|+||++++++...+-....++ ...+|.++ ..+..++++|. .-.+.+|.++..+....+.
T Consensus 168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigal--a~~edWlvCGg-Gp~lslwhLrsse~t~vfp 244 (325)
T KOG0649|consen 168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGAL--AVNEDWLVCGG-GPKLSLWHLRSSESTCVFP 244 (325)
T ss_pred CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEE--eccCceEEecC-CCceeEEeccCCCceEEEe
Confidence 7789999999999999999998876553221111 11234444 45677999885 4578999998776654432
Q ss_pred cccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCce
Q 024451 225 SLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGY 263 (267)
Q Consensus 225 ~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~ 263 (267)
...++.-+.|- ...+++++..+.+.-|.++|-
T Consensus 245 -----ipa~v~~v~F~--~d~vl~~G~g~~v~~~~l~Gv 276 (325)
T KOG0649|consen 245 -----IPARVHLVDFV--DDCVLIGGEGNHVQSYTLNGV 276 (325)
T ss_pred -----cccceeEeeee--cceEEEeccccceeeeeeccE
Confidence 33456667665 356777888888999988764
No 153
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.87 E-value=3.8e-20 Score=156.34 Aligned_cols=227 Identities=17% Similarity=0.307 Sum_probs=175.6
Q ss_pred cCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCcc
Q 024451 16 GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTA 95 (267)
Q Consensus 16 ~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~ 95 (267)
-.+..++.|+....+.....++. ..++.-...+++|..++.+ ++.+.|+..|+|-+||++++.....|.. .+.|..
T Consensus 419 ~~~~~~~tW~~~n~~~G~~~L~~-~~~~~~~~~~~av~vs~CG-NF~~IG~S~G~Id~fNmQSGi~r~sf~~--~~ah~~ 494 (910)
T KOG1539|consen 419 KGKRSAYTWNFRNKTSGRHVLDP-KRFKKDDINATAVCVSFCG-NFVFIGYSKGTIDRFNMQSGIHRKSFGD--SPAHKG 494 (910)
T ss_pred cCcceEEEEeccCcccccEEecC-ccccccCcceEEEEEeccC-ceEEEeccCCeEEEEEcccCeeeccccc--CccccC
Confidence 34667889998764422211111 1122234678889988875 6888999999999999999987776642 247999
Q ss_pred ceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEE
Q 024451 96 DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQV 175 (267)
Q Consensus 96 ~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 175 (267)
.|..++.+.. ++.+++++.+|.+++||.+. ......+. -...+..+.++.....++.+..|-.|+++|..+.+....
T Consensus 495 ~V~gla~D~~-n~~~vsa~~~Gilkfw~f~~-k~l~~~l~-l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~ 571 (910)
T KOG1539|consen 495 EVTGLAVDGT-NRLLVSAGADGILKFWDFKK-KVLKKSLR-LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVRE 571 (910)
T ss_pred ceeEEEecCC-CceEEEccCcceEEEEecCC-cceeeeec-cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHH
Confidence 9999998854 56789999999999999874 22344443 245678889998888999999999999999988766555
Q ss_pred EEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECC-Cc
Q 024451 176 YYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD-TN 254 (267)
Q Consensus 176 ~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d-g~ 254 (267)
+.. +...|++++|||+|++|++++.|+.|++||+.+...+..+ .-..+..++.|+|+|.+||+...| .-
T Consensus 572 f~g-----h~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~-----~vd~~~~sls~SPngD~LAT~Hvd~~g 641 (910)
T KOG1539|consen 572 FWG-----HGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGL-----LVDSPCTSLSFSPNGDFLATVHVDQNG 641 (910)
T ss_pred hhc-----cccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeE-----ecCCcceeeEECCCCCEEEEEEecCce
Confidence 433 3346999999999999999999999999999998877544 235678999999999999999998 55
Q ss_pred EEEEe
Q 024451 255 LKIWA 259 (267)
Q Consensus 255 i~~w~ 259 (267)
|.+|.
T Consensus 642 IylWs 646 (910)
T KOG1539|consen 642 IYLWS 646 (910)
T ss_pred EEEEE
Confidence 99995
No 154
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=8.8e-20 Score=155.62 Aligned_cols=227 Identities=14% Similarity=0.233 Sum_probs=170.5
Q ss_pred eCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEE
Q 024451 5 FSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSV 84 (267)
Q Consensus 5 ~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~ 84 (267)
....+.++++++.+++|.+|......+ ...+..-+-++.+++|+.++ .+++.||.|-.|++-++........
T Consensus 62 ia~~s~~f~~~s~~~tv~~y~fps~~~-------~~iL~Rftlp~r~~~v~g~g-~~iaagsdD~~vK~~~~~D~s~~~~ 133 (933)
T KOG1274|consen 62 IACYSNHFLTGSEQNTVLRYKFPSGEE-------DTILARFTLPIRDLAVSGSG-KMIAAGSDDTAVKLLNLDDSSQEKV 133 (933)
T ss_pred EeecccceEEeeccceEEEeeCCCCCc-------cceeeeeeccceEEEEecCC-cEEEeecCceeEEEEeccccchhee
Confidence 345667899999999999998876432 22344556788999998865 5899999999999999987655544
Q ss_pred eCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEee-------cc-ccceeEEEEecCCCEEEEe
Q 024451 85 FGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH-------GH-EGDVNTVKFFPDGNRFGTG 156 (267)
Q Consensus 85 ~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~-------~~-~~~i~~~~~~~~~~~l~~~ 156 (267)
+ .+|+.+|.++.++| .+.++++.+.||.|++||+.... ....+. .. ...+..++|+|++..++..
T Consensus 134 l-----rgh~apVl~l~~~p-~~~fLAvss~dG~v~iw~~~~~~-~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~ 206 (933)
T KOG1274|consen 134 L-----RGHDAPVLQLSYDP-KGNFLAVSSCDGKVQIWDLQDGI-LSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVP 206 (933)
T ss_pred e-----cccCCceeeeeEcC-CCCEEEEEecCceEEEEEcccch-hhhhcccCCccccccccceeeeeeecCCCCeEEee
Confidence 4 47999999999996 56789999999999999986432 221111 11 3456789999999899999
Q ss_pred eCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEE
Q 024451 157 SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITC 236 (267)
Q Consensus 157 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~ 236 (267)
+.|+.|++|+..+......+...+ ....+..+.|+|+|.|||+++.||.|.|||.++-+. ......|.+
T Consensus 207 ~~d~~Vkvy~r~~we~~f~Lr~~~---~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~--------~~~~~~Vc~ 275 (933)
T KOG1274|consen 207 PVDNTVKVYSRKGWELQFKLRDKL---SSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER--------HEFKRAVCC 275 (933)
T ss_pred ccCCeEEEEccCCceeheeecccc---cccceEEEEEcCCCcEEeeeccCCcEEEEecccchh--------ccccceeEE
Confidence 999999999998876554443322 223488999999999999999999999999876211 123468999
Q ss_pred EEECCCCCeEEEeECCCcEEE
Q 024451 237 LGLSADGSALCTGSWDTNLKI 257 (267)
Q Consensus 237 ~~~~p~~~~l~sgs~dg~i~~ 257 (267)
++|.|+.+-+-.-...|..-+
T Consensus 276 ~aw~p~~n~it~~~~~g~~~~ 296 (933)
T KOG1274|consen 276 EAWKPNANAITLITALGTLGV 296 (933)
T ss_pred EecCCCCCeeEEEeecccccc
Confidence 999999886654444444333
No 155
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.87 E-value=6.7e-21 Score=152.70 Aligned_cols=241 Identities=19% Similarity=0.261 Sum_probs=174.9
Q ss_pred eeeCCCC-CeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 3 CAFSPTG-QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 3 ~~~~~~g-~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
++|+... -..++.+.|..+++|.-.. +.+.+|+.+...+.+ -+|++..... .++++|+..+.|+|||++....
T Consensus 40 ~~w~~~n~lvvas~~gdk~~~~~~K~g---~~~~Vp~~~k~~gd~--~~Cv~~~s~S-~y~~sgG~~~~Vkiwdl~~kl~ 113 (673)
T KOG4378|consen 40 FNWQRRNFLVVASMAGDKVMRIKEKDG---KTPEVPRVRKLTGDN--AFCVACASQS-LYEISGGQSGCVKIWDLRAKLI 113 (673)
T ss_pred eeccccceEEEeecCCceeEEEecccC---CCCccceeeccccch--HHHHhhhhcc-eeeeccCcCceeeehhhHHHHH
Confidence 4565544 3445566789999996443 244566666666653 3455444433 6899999999999999974322
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEee-ccccceeEEEEecCCC-EEEEeeCC
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH-GHEGDVNTVKFFPDGN-RFGTGSDD 159 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~~i~~~~~~~~~~-~l~~~~~d 159 (267)
.++..+|+..|+++.++. .+.++++++..|.|.|..+....+ ...+. +.+..|.-+.|+|..+ +|.+++.+
T Consensus 114 -----hr~lkdh~stvt~v~YN~-~DeyiAsvs~gGdiiih~~~t~~~-tt~f~~~sgqsvRll~ys~skr~lL~~asd~ 186 (673)
T KOG4378|consen 114 -----HRFLKDHQSTVTYVDYNN-TDEYIASVSDGGDIIIHGTKTKQK-TTTFTIDSGQSVRLLRYSPSKRFLLSIASDK 186 (673)
T ss_pred -----hhhccCCcceeEEEEecC-CcceeEEeccCCcEEEEecccCcc-ccceecCCCCeEEEeecccccceeeEeeccC
Confidence 234468999999999985 567899999999999999875432 33343 2245567899999765 46678999
Q ss_pred CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCC-EEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEE
Q 024451 160 GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLG 238 (267)
Q Consensus 160 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~ 238 (267)
|.|.+||+........+... +..+...+||+|.+. +|++-+.|..|++||....+....+ ....+..+++
T Consensus 187 G~VtlwDv~g~sp~~~~~~~----HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l-----~y~~Plstva 257 (673)
T KOG4378|consen 187 GAVTLWDVQGMSPIFHASEA----HSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRL-----TYSHPLSTVA 257 (673)
T ss_pred CeEEEEeccCCCcccchhhh----ccCCcCcceecCCccceEEEecccceEEEeeccccccccee-----eecCCcceee
Confidence 99999999765554443322 345678999999776 5566789999999998765544322 2345789999
Q ss_pred ECCCCCeEEEeECCCcEEEEecCceEe
Q 024451 239 LSADGSALCTGSWDTNLKIWAFGGYRR 265 (267)
Q Consensus 239 ~~p~~~~l~sgs~dg~i~~w~~~~~~~ 265 (267)
|+|+|.+|+.|+..|.|..||+.+..-
T Consensus 258 f~~~G~~L~aG~s~G~~i~YD~R~~k~ 284 (673)
T KOG4378|consen 258 FSECGTYLCAGNSKGELIAYDMRSTKA 284 (673)
T ss_pred ecCCceEEEeecCCceEEEEecccCCC
Confidence 999999999999999999999977653
No 156
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.87 E-value=5.1e-20 Score=138.49 Aligned_cols=234 Identities=19% Similarity=0.278 Sum_probs=162.3
Q ss_pred eEEEeecCCCCCCCC--CCccccccc-CCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee-EEEeCCccccCCcc
Q 024451 20 VCSIFNLNSPTDKDG--NLPVSRMLS-GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR-TSVFGGEFQSGHTA 95 (267)
Q Consensus 20 ~v~~w~~~~~~~~~~--~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~-~~~~~~~~~~~~~~ 95 (267)
...||.+..+..+.. .+.+...+. .|-+.|.|+.|.|+.+ .+++- .|+.|.+|+++.... ...+.......+..
T Consensus 94 ~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~-klasm-~dn~i~l~~l~ess~~vaev~ss~s~e~~~ 171 (370)
T KOG1007|consen 94 GAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD-KLASM-DDNNIVLWSLDESSKIVAEVLSSESAEMRH 171 (370)
T ss_pred eEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC-eeEEe-ccCceEEEEcccCcchheeecccccccccc
Confidence 366999877544321 122333443 5567899999999765 45544 489999999987654 23332222234666
Q ss_pred ceEEEEEeCC-CCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCC-EEEEeeCCCcEEEEeCCCCeee
Q 024451 96 DVLSVSISGS-NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN-RFGTGSDDGTCRLFDIRTGHQL 173 (267)
Q Consensus 96 ~i~~~~~~~~-~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~ 173 (267)
..++-+|+|- +..++ ....|++++.||+++..+....-.+|...|..+.|.|+.. ++++|+.||.|+|||++..+..
T Consensus 172 ~ftsg~WspHHdgnqv-~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~p 250 (370)
T KOG1007|consen 172 SFTSGAWSPHHDGNQV-ATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFP 250 (370)
T ss_pred eecccccCCCCccceE-EEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcc
Confidence 7788889874 34444 4566889999999976665566678999999999999865 5789999999999999876543
Q ss_pred EEEEeecCCCCCCcEEEEEEccC-CCEEEEEEeCCeEEEEeCCccc------------------------eeee-ccccc
Q 024451 174 QVYYQQHGENEIPHVTSIAFSIS-GRLLFAGYSNGDCYVWDTLLAK------------------------VVLN-LGSLQ 227 (267)
Q Consensus 174 ~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~g~~dg~i~i~d~~~~~------------------------~~~~-~~~~~ 227 (267)
.. ....+.-++.++.|+|. .+.+++|++|..|.+|-...-- ++.. .....
T Consensus 251 v~----el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~ty 326 (370)
T KOG1007|consen 251 VQ----ELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETY 326 (370)
T ss_pred cc----ccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccc
Confidence 21 22334558999999986 5678899999999999642110 0000 00011
Q ss_pred CCccceEEEEEECC-CCCeEEEeECCCcEEEEec
Q 024451 228 NSHEGRITCLGLSA-DGSALCTGSWDTNLKIWAF 260 (267)
Q Consensus 228 ~~~~~~v~~~~~~p-~~~~l~sgs~dg~i~~w~~ 260 (267)
..|++.|.+++||. |.=++|+-|.||++.|=..
T Consensus 327 dehEDSVY~~aWSsadPWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 327 DEHEDSVYALAWSSADPWIFASLSYDGRVIISSV 360 (370)
T ss_pred cccccceEEEeeccCCCeeEEEeccCceEEeecC
Confidence 35899999999985 4446789999999988653
No 157
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.87 E-value=6.1e-21 Score=151.28 Aligned_cols=213 Identities=17% Similarity=0.187 Sum_probs=158.3
Q ss_pred ccCCeeeEEEEEEecCCC-eeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEE
Q 024451 42 LSGHKGYVSCCQYVPDED-THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 120 (267)
Q Consensus 42 ~~~h~~~v~~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~ 120 (267)
.+-|.+.|++++|+|... ..+++|..-|.|-+||+.++++...- ......|...|.++.|+|.+..++++.+.||+|+
T Consensus 182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~-v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR 260 (498)
T KOG4328|consen 182 AKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDG-VYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIR 260 (498)
T ss_pred eEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCc-eEEeccCCccccceEecCCChhheeeeccCceee
Confidence 445788999999999877 67788888999999999643221100 0111468999999999999999999999999999
Q ss_pred EEeCCCccc-ceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCC-
Q 024451 121 LWDTRVASR-AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR- 198 (267)
Q Consensus 121 iwd~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~- 198 (267)
.-|++.... .+..+......+..+.|+.+...++.+..=|...+||+++.+...... ..+...|.+++++|...
T Consensus 261 ~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~----~lh~kKI~sv~~NP~~p~ 336 (498)
T KOG4328|consen 261 LQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENL----RLHKKKITSVALNPVCPW 336 (498)
T ss_pred eeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhh----hhhhcccceeecCCCCch
Confidence 999874321 122222234556788888877777778877899999999876422111 22233799999999876
Q ss_pred EEEEEEeCCeEEEEeCCccceeee-cccccCCccceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451 199 LLFAGYSNGDCYVWDTLLAKVVLN-LGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF 260 (267)
Q Consensus 199 ~l~~g~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~ 260 (267)
+|++++.|+..+|||++....-.. +.+ ...|...|.++.|||.+.-|++.+.|.+|+||+.
T Consensus 337 ~laT~s~D~T~kIWD~R~l~~K~sp~ls-t~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~ds 398 (498)
T KOG4328|consen 337 FLATASLDQTAKIWDLRQLRGKASPFLS-TLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDS 398 (498)
T ss_pred heeecccCcceeeeehhhhcCCCCccee-cccccceeeeeEEcCCCCceEeeccCCceEEeec
Confidence 678899999999999875432221 111 2468999999999999888999999999999985
No 158
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.86 E-value=1.7e-19 Score=149.76 Aligned_cols=254 Identities=19% Similarity=0.246 Sum_probs=178.3
Q ss_pred ceeeCCCCC---eEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCC
Q 024451 2 TCAFSPTGQ---SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT 78 (267)
Q Consensus 2 ~~~~~~~g~---~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 78 (267)
|.+|-|+.+ .+++|+.|+.|.+|.+.... ......+.+|...+.|+.-.+. .......|+++.+||.+.
T Consensus 59 C~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~-----~~~i~~~~g~~~~~~cv~a~~~---~~~~~~ad~~v~vw~~~~ 130 (764)
T KOG1063|consen 59 CVHWLPTSEIVAEMVSGDSDGRVILWKLRDEY-----LIKIYTIQGHCKECVCVVARSS---VMTCKAADGTVSVWDKQQ 130 (764)
T ss_pred EEEEcccccccceEEEccCCCcEEEEEEeehh-----eEEEEeecCcceeEEEEEeeee---EEEeeccCceEEEeecCC
Confidence 445666666 79999999999999987321 2345567788888888765442 222337899999999944
Q ss_pred CeeEE--E-----------------------------------eCC--------ccccCCccceEEEEEeCCC--CeEEE
Q 024451 79 GLRTS--V-----------------------------------FGG--------EFQSGHTADVLSVSISGSN--SRMFV 111 (267)
Q Consensus 79 ~~~~~--~-----------------------------------~~~--------~~~~~~~~~i~~~~~~~~~--~~~~~ 111 (267)
.+... . +.. ....||.+.|.+++|.... .-+++
T Consensus 131 ~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~la 210 (764)
T KOG1063|consen 131 DEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLA 210 (764)
T ss_pred CceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEE
Confidence 33000 0 000 0124799999999887543 46788
Q ss_pred EecCCCeEEEEeCCCcc----------------c----ce----------EEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451 112 SGSCDSTARLWDTRVAS----------------R----AV----------RTFHGHEGDVNTVKFFPDGNRFGTGSDDGT 161 (267)
Q Consensus 112 s~~~d~~i~iwd~~~~~----------------~----~~----------~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 161 (267)
+++.|..||||.+.... . .. ..+.||.+.|+++.|+|.+..|.+++.|++
T Consensus 211 S~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDks 290 (764)
T KOG1063|consen 211 SSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKS 290 (764)
T ss_pred ecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcc
Confidence 99999999999653211 0 00 123489999999999999989999999999
Q ss_pred EEEEeCCCCeeeEEEEeecCC--CCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEE
Q 024451 162 CRLFDIRTGHQLQVYYQQHGE--NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGL 239 (267)
Q Consensus 162 i~iwd~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~ 239 (267)
+.+|...+..-+-.-.-..+. +........-|+|+++.+++-+..|..++|-.+... .........+|.+.|..++|
T Consensus 291 miiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~-~w~~~~~iSGH~~~V~dv~W 369 (764)
T KOG1063|consen 291 MIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKT-FWTQEPVISGHVDGVKDVDW 369 (764)
T ss_pred eEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCcc-ceeeccccccccccceeeee
Confidence 999998765322111111111 122345778899999999999999999999832221 11222234689999999999
Q ss_pred CCCCCeEEEeECCCcEEEEecCceE
Q 024451 240 SADGSALCTGSWDTNLKIWAFGGYR 264 (267)
Q Consensus 240 ~p~~~~l~sgs~dg~i~~w~~~~~~ 264 (267)
+|.|+||++.|.|.+-|+|+-.|.+
T Consensus 370 ~psGeflLsvs~DQTTRlFa~wg~q 394 (764)
T KOG1063|consen 370 DPSGEFLLSVSLDQTTRLFARWGRQ 394 (764)
T ss_pred cCCCCEEEEeccccceeeecccccc
Confidence 9999999999999999999866543
No 159
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.85 E-value=2.4e-19 Score=140.06 Aligned_cols=207 Identities=18% Similarity=0.269 Sum_probs=153.7
Q ss_pred CceeeCC-CCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCC
Q 024451 1 MTCAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG 79 (267)
Q Consensus 1 ~~~~~~~-~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~ 79 (267)
++++|+| +...||+||.|.+|.||+...+.-..........+.||...|..++|+|.-.+.|+|++.|++|.|||+.++
T Consensus 85 LDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tg 164 (472)
T KOG0303|consen 85 LDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTG 164 (472)
T ss_pred cccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCC
Confidence 4578887 447899999999999999876432222223455788999999999999987788999999999999999999
Q ss_pred eeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccc-eeEEEEecCCCEEEEee-
Q 024451 80 LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGD-VNTVKFFPDGNRFGTGS- 157 (267)
Q Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~- 157 (267)
+....+ .|.+.|.++.|+. ++.++++.+.|+.|||||.+.+. .+..-.+|.+. -..+.|-.+++.+.+|.
T Consensus 165 eali~l------~hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~~-~v~e~~~heG~k~~Raifl~~g~i~tTGfs 236 (472)
T KOG0303|consen 165 EALITL------DHPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRGT-VVSEGVAHEGAKPARAIFLASGKIFTTGFS 236 (472)
T ss_pred ceeeec------CCCCeEEEEEecc-CCceeeeecccceeEEEcCCCCc-EeeecccccCCCcceeEEeccCceeeeccc
Confidence 866554 3999999999995 56788999999999999998644 45445677653 45677888888666664
Q ss_pred --CCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEE-EEEEeCCeEEEEeCCccc
Q 024451 158 --DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLL-FAGYSNGDCYVWDTLLAK 218 (267)
Q Consensus 158 --~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~g~~dg~i~i~d~~~~~ 218 (267)
.++.+-+||...-+....+.. -..+ ..|.-=-|+++...+ ++|-.|+.|+-|......
T Consensus 237 r~seRq~aLwdp~nl~eP~~~~e-lDtS--nGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 237 RMSERQIALWDPNNLEEPIALQE-LDTS--NGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred cccccceeccCcccccCcceeEE-eccC--CceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 578999999876554322221 1111 123333467887766 556689999999875543
No 160
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=1.9e-19 Score=155.79 Aligned_cols=247 Identities=17% Similarity=0.273 Sum_probs=169.3
Q ss_pred CCCeEEEccCCCeEEEeecCCCCCCCCC-----CcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeE
Q 024451 8 TGQSVACGGLDSVCSIFNLNSPTDKDGN-----LPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT 82 (267)
Q Consensus 8 ~g~~l~~~~~d~~v~~w~~~~~~~~~~~-----~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 82 (267)
|..++++++.||.||||+--....++.+ .++...+.+..+.---+.|..+. .+|+++|.-..|+|||...+...
T Consensus 1122 D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~-G~Ll~tGd~r~IRIWDa~~E~~~ 1200 (1387)
T KOG1517|consen 1122 DDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQS-GHLLVTGDVRSIRIWDAHKEQVV 1200 (1387)
T ss_pred chhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhC-CeEEecCCeeEEEEEecccceeE
Confidence 4578999999999999974322111110 11111122222111235676655 46777777889999999987666
Q ss_pred EEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCccc--ceEEeeccccc--eeEEEEecCCC-EEEEee
Q 024451 83 SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR--AVRTFHGHEGD--VNTVKFFPDGN-RFGTGS 157 (267)
Q Consensus 83 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~~--i~~~~~~~~~~-~l~~~~ 157 (267)
.-++. +.+..++++..+..++.++++|-.||.|++||.+.... .+...+.|+.. |..+.+.+.|- .+++|+
T Consensus 1201 ~diP~----~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs 1276 (1387)
T KOG1517|consen 1201 ADIPY----GSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGS 1276 (1387)
T ss_pred eeccc----CCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeec
Confidence 55442 34455677777666678999999999999999986543 56667788877 99999988664 599999
Q ss_pred CCCcEEEEeCCCCeeeEEEEeecCCCCCC-cEEEEEEccCCCEEEEEEeCCeEEEEeCCccce--eeecccccCCccceE
Q 024451 158 DDGTCRLFDIRTGHQLQVYYQQHGENEIP-HVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV--VLNLGSLQNSHEGRI 234 (267)
Q Consensus 158 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~~v 234 (267)
.||.|++||++.. ....+.......+.+ ..+++..+++...+|+|+. +.|.||++..... +.....+...-.+.+
T Consensus 1277 ~~G~I~~~DlR~~-~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~ 1354 (1387)
T KOG1517|consen 1277 QDGDIQLLDLRMS-SKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSV 1354 (1387)
T ss_pred cCCeEEEEecccC-cccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCc
Confidence 9999999999974 222222211111112 4789999999999999988 9999999753321 111111212234567
Q ss_pred EEEEECCCCCeEEEeECCCcEEEEecC
Q 024451 235 TCLGLSADGSALCTGSWDTNLKIWAFG 261 (267)
Q Consensus 235 ~~~~~~p~~~~l~sgs~dg~i~~w~~~ 261 (267)
.|++|+|..-+||.|+.|.+|.||.-.
T Consensus 1355 scL~FHP~~~llAaG~~Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1355 SCLAFHPHRLLLAAGSADSTVSIYSCE 1381 (1387)
T ss_pred ceeeecchhHhhhhccCCceEEEeecC
Confidence 999999999999999999999999743
No 161
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.85 E-value=5e-19 Score=149.41 Aligned_cols=252 Identities=20% Similarity=0.213 Sum_probs=172.1
Q ss_pred CceeeCCC-CCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCC-eeEEEeeCCCeEEEEeCCC
Q 024451 1 MTCAFSPT-GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDED-THLITSSGDQTCVLWDITT 78 (267)
Q Consensus 1 ~~~~~~~~-g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~l~s~~~d~~v~iwd~~~ 78 (267)
++++|+|. ..+++.|..+|+|.+||+.....+. ..+.......|..++..+.|.++.. .-+++++.||.|..|+++.
T Consensus 246 ~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~-~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~ 324 (555)
T KOG1587|consen 246 TCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP-PSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDM 324 (555)
T ss_pred eEEEeccCCcceEEeeccCceEEEEEccCCCCCC-CcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccc
Confidence 47889974 4788889999999999997643211 2234445567999999999975432 3489999999999998763
Q ss_pred Cee-EEEeCCcc------ccCCccceEEEEEeCCCCeEEEEecCCCeEEEEe---CCCcc----cceEEeeccccceeEE
Q 024451 79 GLR-TSVFGGEF------QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWD---TRVAS----RAVRTFHGHEGDVNTV 144 (267)
Q Consensus 79 ~~~-~~~~~~~~------~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd---~~~~~----~~~~~~~~~~~~i~~~ 144 (267)
-.. ........ .......+.+++|.+.+...|+.|+.+|.|.-=+ .+... +....+..|.++|+++
T Consensus 325 l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v 404 (555)
T KOG1587|consen 325 LSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAV 404 (555)
T ss_pred cccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEee
Confidence 211 11110010 0122345678889888888899999999987632 22111 1233556788999999
Q ss_pred EEecCCC-EEEEeeCCCcEEEEeCC-CCeeeEEEEeecCCCCCCcEEEEEEccCCC-EEEEEEeCCeEEEEeCCccceee
Q 024451 145 KFFPDGN-RFGTGSDDGTCRLFDIR-TGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAKVVL 221 (267)
Q Consensus 145 ~~~~~~~-~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~g~~dg~i~i~d~~~~~~~~ 221 (267)
.++|-.. .|.+++ |.+++||... ....+. .+. .....+.+++|||... .++++..+|.|.+||+.......
T Consensus 405 ~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~-~~~----~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~P 478 (555)
T KOG1587|consen 405 SRNPFYPKNFLSVG-DWTVRIWSEDVIASPLL-SLD----SSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEP 478 (555)
T ss_pred ecCCCccceeeeec-cceeEeccccCCCCcch-hhh----hccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCC
Confidence 9999654 455555 9999999977 333221 111 1223589999999876 56667789999999986543211
Q ss_pred ecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451 222 NLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG 261 (267)
Q Consensus 222 ~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~ 261 (267)
... +..+......+.|+++|+.|++|...|++.+|++.
T Consensus 479 -v~s-~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 479 -VLS-QKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred -ccc-ccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 111 12235667888899999999999999999999974
No 162
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.84 E-value=2.7e-19 Score=148.36 Aligned_cols=232 Identities=16% Similarity=0.279 Sum_probs=164.1
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
.++|.|||..|+.+-.+ .+.+||..... ...++++|++-|+||+|+.+++ .++||+.|+.|.+|+..-.-
T Consensus 17 d~afkPDGsqL~lAAg~-rlliyD~ndG~-------llqtLKgHKDtVycVAys~dGk-rFASG~aDK~VI~W~~klEG- 86 (1081)
T KOG1538|consen 17 DIAFKPDGTQLILAAGS-RLLVYDTSDGT-------LLQPLKGHKDTVYCVAYAKDGK-RFASGSADKSVIIWTSKLEG- 86 (1081)
T ss_pred eeEECCCCceEEEecCC-EEEEEeCCCcc-------cccccccccceEEEEEEccCCc-eeccCCCceeEEEecccccc-
Confidence 57899999888887655 69999986532 6778999999999999999764 79999999999999864321
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT 161 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 161 (267)
++ ...|.+.|.++.|+|-+ +.+++++-. ..-+|...+ +.+...+ ....|.+++|..||.+++.|-.||+
T Consensus 87 --~L----kYSH~D~IQCMsFNP~~-h~LasCsLs-dFglWS~~q--K~V~K~k-ss~R~~~CsWtnDGqylalG~~nGT 155 (1081)
T KOG1538|consen 87 --IL----KYSHNDAIQCMSFNPIT-HQLASCSLS-DFGLWSPEQ--KSVSKHK-SSSRIICCSWTNDGQYLALGMFNGT 155 (1081)
T ss_pred --ee----eeccCCeeeEeecCchH-HHhhhcchh-hccccChhh--hhHHhhh-hheeEEEeeecCCCcEEEEeccCce
Confidence 22 23699999999999754 556776654 456897653 2222221 2356889999999999999999999
Q ss_pred EEEEeCCCCeeeEEEEeecCCCC--------------------------------------------CCcEEEEEEccCC
Q 024451 162 CRLFDIRTGHQLQVYYQQHGENE--------------------------------------------IPHVTSIAFSISG 197 (267)
Q Consensus 162 i~iwd~~~~~~~~~~~~~~~~~~--------------------------------------------~~~v~~~~~s~~~ 197 (267)
|.+-+-. +++...+....+.++ .....++.+-++|
T Consensus 156 IsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NG 234 (1081)
T KOG1538|consen 156 ISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNG 234 (1081)
T ss_pred EEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCC
Confidence 9987532 222211111111110 0012344555678
Q ss_pred CEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451 198 RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF 260 (267)
Q Consensus 198 ~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~ 260 (267)
.+++.|+.|+.+++|.... -.+-.. ......|++++..|++++.+.|+.||+|.-|.+
T Consensus 235 Ey~LiGGsdk~L~~fTR~G-vrLGTv----g~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 235 EYILLGGSDKQLSLFTRDG-VRLGTV----GEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred cEEEEccCCCceEEEeecC-eEEeec----cccceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence 8888888899898887432 222122 224568999999999999999999999988864
No 163
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=4.7e-19 Score=140.87 Aligned_cols=202 Identities=17% Similarity=0.226 Sum_probs=154.0
Q ss_pred eeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCC
Q 024451 46 KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTR 125 (267)
Q Consensus 46 ~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~ 125 (267)
.+.|++++|+|. ...+++|+.|++++||.+.-.....+.... -...+|.+.+|.+.+...+++++....+..||+.
T Consensus 213 ~~~I~sv~FHp~-~plllvaG~d~~lrifqvDGk~N~~lqS~~---l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle 288 (514)
T KOG2055|consen 213 HGGITSVQFHPT-APLLLVAGLDGTLRIFQVDGKVNPKLQSIH---LEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLE 288 (514)
T ss_pred cCCceEEEecCC-CceEEEecCCCcEEEEEecCccChhheeee---eccCccceeeecCCCceEEEecccceEEEEeecc
Confidence 467999999996 468999999999999988643222111111 1345788888988766688999999999999987
Q ss_pred Cccc-ceEEeeccc-cceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEE
Q 024451 126 VASR-AVRTFHGHE-GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG 203 (267)
Q Consensus 126 ~~~~-~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g 203 (267)
.... .+....++. ..+.....+|++++++..|..|.|.+....+++.+..+.. .+.+..++|+.++..|++.
T Consensus 289 ~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki------eG~v~~~~fsSdsk~l~~~ 362 (514)
T KOG2055|consen 289 TAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI------EGVVSDFTFSSDSKELLAS 362 (514)
T ss_pred ccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee------ccEEeeEEEecCCcEEEEE
Confidence 4321 223333443 3567888999999999999999999999888766544432 2358999999999999999
Q ss_pred EeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451 204 YSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF 260 (267)
Q Consensus 204 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~ 260 (267)
+.+|+|++||+.+...+..+. ....-.-++++.+++|.|||+||..|.|.||+.
T Consensus 363 ~~~GeV~v~nl~~~~~~~rf~---D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~ 416 (514)
T KOG2055|consen 363 GGTGEVYVWNLRQNSCLHRFV---DDGSVHGTSLCISLNGSYLATGSDSGIVNIYDG 416 (514)
T ss_pred cCCceEEEEecCCcceEEEEe---ecCccceeeeeecCCCceEEeccCcceEEEecc
Confidence 999999999999887665442 112223467888999999999999999999984
No 164
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.83 E-value=3e-19 Score=132.72 Aligned_cols=243 Identities=14% Similarity=0.240 Sum_probs=171.6
Q ss_pred eeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCccccccc-CCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLS-GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
..|..+++ |.+|..-|.|.+|++.... ....++ .|...|+.++..|++ .+.+-+.|..+.+|++.-...
T Consensus 20 ~~fqa~~r-L~sg~~~G~V~~w~lqt~r-------~~~~~r~~g~~~it~lq~~p~d--~l~tqgRd~~L~lw~ia~s~~ 89 (323)
T KOG0322|consen 20 VLFQANER-LMSGLSVGIVKMWVLQTER-------DLPLIRLFGRLFITNLQSIPND--SLDTQGRDPLLILWTIAYSAF 89 (323)
T ss_pred hhhccchh-hhcccccceEEEEEeecCc-------cchhhhhhccceeeceeecCCc--chhhcCCCceEEEEEccCcce
Confidence 34555555 9999999999999997632 223344 467889999988863 588999999999999865211
Q ss_pred EEE---------------------------eCCc---------------------cccCCccceEEEEEeC--CCCeEEE
Q 024451 82 TSV---------------------------FGGE---------------------FQSGHTADVLSVSISG--SNSRMFV 111 (267)
Q Consensus 82 ~~~---------------------------~~~~---------------------~~~~~~~~i~~~~~~~--~~~~~~~ 111 (267)
..+ +..+ ...+..+.+.+..+.. ...-+++
T Consensus 90 i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lll 169 (323)
T KOG0322|consen 90 ISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLL 169 (323)
T ss_pred EEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEE
Confidence 110 0000 0012233344433221 1223567
Q ss_pred EecCCCeEEEEeCCCcc---------cceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCC
Q 024451 112 SGSCDSTARLWDTRVAS---------RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE 182 (267)
Q Consensus 112 s~~~d~~i~iwd~~~~~---------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 182 (267)
+|..+|.+-+||+..+. +.......|..+|.++.|.+..+.=++|+.+..+..|.+........+.. ...
T Consensus 170 aGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~-e~~ 248 (323)
T KOG0322|consen 170 AGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRK-EIT 248 (323)
T ss_pred EeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccc-eEE
Confidence 78899999999987542 22334457889999999988766778888899999999864311111111 112
Q ss_pred CCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451 183 NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF 260 (267)
Q Consensus 183 ~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~ 260 (267)
.+.+.+..+.+-||++.+|+++-||.+++|..++...+.-+ +.|.+.|.+++|+|+.+.+|.+|.|++|.+|++
T Consensus 249 lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVL----kyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 249 LKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVL----KYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred ecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhh----hhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 23356888999999999999999999999999887765433 579999999999999999999999999999985
No 165
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1.7e-18 Score=135.48 Aligned_cols=253 Identities=17% Similarity=0.224 Sum_probs=175.2
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
++.|+.++++|++||.|..+++|+++...-..-..|....-..|.+.|+|+.|... .+.+++|+.+++|.+-|+++.+.
T Consensus 61 AlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~-N~~~~SG~~~~~VI~HDiEt~qs 139 (609)
T KOG4227|consen 61 ALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLE-NRFLYSGERWGTVIKHDIETKQS 139 (609)
T ss_pred eeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccC-CeeEecCCCcceeEeeeccccee
Confidence 46799999999999999999999986532111112233334567899999999874 46899999999999999999877
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEee--ccccceeEEEEecC-CCEEEEeeC
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH--GHEGDVNTVKFFPD-GNRFGTGSD 158 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~--~~~~~i~~~~~~~~-~~~l~~~~~ 158 (267)
+.++.- ....+.|..+..+|. +..|++.+.++.|.+||.+....++..+. ......+++.|+|. ..++++.+.
T Consensus 140 i~V~~~---~~~~~~VY~m~~~P~-DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~ 215 (609)
T KOG4227|consen 140 IYVANE---NNNRGDVYHMDQHPT-DNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSE 215 (609)
T ss_pred eeeecc---cCcccceeecccCCC-CceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccc
Confidence 666531 123447888888876 67889999999999999985443333322 22345788999995 467788888
Q ss_pred CCcEEEEeCCCCeeeE------------------------------------------------EEEeecCCC---CCCc
Q 024451 159 DGTCRLFDIRTGHQLQ------------------------------------------------VYYQQHGEN---EIPH 187 (267)
Q Consensus 159 d~~i~iwd~~~~~~~~------------------------------------------------~~~~~~~~~---~~~~ 187 (267)
.+-+.+||.+..+... ++...+..+ ....
T Consensus 216 ~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T 295 (609)
T KOG4227|consen 216 TGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKT 295 (609)
T ss_pred cCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeee
Confidence 8999999987532100 000000000 1112
Q ss_pred EEEEEEccCCCEEEEEEeCCeEEEEeCCccc-------------------eeeecccccCCccceEEEEEECCCCCeEEE
Q 024451 188 VTSIAFSISGRLLFAGYSNGDCYVWDTLLAK-------------------VVLNLGSLQNSHEGRITCLGLSADGSALCT 248 (267)
Q Consensus 188 v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~-------------------~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s 248 (267)
+.+++|.-+. -+++|+.+=.|++|.+.... .+..-....++|.+.+..+.|+|...+|++
T Consensus 296 ~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~S 374 (609)
T KOG4227|consen 296 IKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVS 374 (609)
T ss_pred eeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEec
Confidence 3455555443 38889888899999753211 011111123578888999999999999999
Q ss_pred eECCCcEEEEec
Q 024451 249 GSWDTNLKIWAF 260 (267)
Q Consensus 249 gs~dg~i~~w~~ 260 (267)
.+-.+.++||.-
T Consensus 375 SGVE~~~KlWS~ 386 (609)
T KOG4227|consen 375 SGVENSFKLWSD 386 (609)
T ss_pred cchhhheecccc
Confidence 999999999963
No 166
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.83 E-value=6.3e-19 Score=132.77 Aligned_cols=244 Identities=18% Similarity=0.324 Sum_probs=171.7
Q ss_pred CeEEEccC----CCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCC----eeEEEeeCCCeEEEEeCCCCee
Q 024451 10 QSVACGGL----DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDED----THLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 10 ~~l~~~~~----d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~----~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
-+|+.|+. .+.|.+-.+.... ++... ...-.|..+++.+.|.|+.. .+||+. +..+|+|.+.....
T Consensus 60 ~rla~gS~~Ee~~Nkvqiv~ld~~s---~e~~~-~a~fd~~YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~ 133 (364)
T KOG0290|consen 60 FRLAVGSFIEEYNNKVQIVQLDEDS---GELVE-DANFDHPYPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEES 133 (364)
T ss_pred eeEEEeeeccccCCeeEEEEEccCC---Cceec-cCCCCCCCCccceEecCCccccCcchhhcc--cCeEEEEeccCcCC
Confidence 34555552 4556666554321 11111 12247889999999999753 345443 44799999874321
Q ss_pred EE----EeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCc--ccceEEeeccccceeEEEEecCC-CEEE
Q 024451 82 TS----VFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA--SRAVRTFHGHEGDVNTVKFFPDG-NRFG 154 (267)
Q Consensus 82 ~~----~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~--~~~~~~~~~~~~~i~~~~~~~~~-~~l~ 154 (267)
.. .+.......+..++++..|+..+.+++.+.+-|-+..|||++.+ .....++-+|.++|+.++|...+ +.||
T Consensus 134 ~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FA 213 (364)
T KOG0290|consen 134 RVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFA 213 (364)
T ss_pred ceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEE
Confidence 11 22222334567789999999888899999999999999999864 22466788999999999998853 6899
Q ss_pred EeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCC-EEEEEE-eCCeEEEEeCCccceeeecccccCCccc
Q 024451 155 TGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGY-SNGDCYVWDTLLAKVVLNLGSLQNSHEG 232 (267)
Q Consensus 155 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~g~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 232 (267)
+.|.||.+|+||++.......+++.. ....+...++|+++.. ++|+=. ....|.|.|++....+. ..+ ..|.+
T Consensus 214 SvgaDGSvRmFDLR~leHSTIIYE~p--~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpv--a~L-~~H~a 288 (364)
T KOG0290|consen 214 SVGADGSVRMFDLRSLEHSTIIYEDP--SPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPV--ARL-RNHQA 288 (364)
T ss_pred EecCCCcEEEEEecccccceEEecCC--CCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcce--ehh-hcCcc
Confidence 99999999999999866554444322 2234678899987665 455533 34689999987665432 222 57999
Q ss_pred eEEEEEECCC-CCeEEEeECCCcEEEEecCceE
Q 024451 233 RITCLGLSAD-GSALCTGSWDTNLKIWAFGGYR 264 (267)
Q Consensus 233 ~v~~~~~~p~-~~~l~sgs~dg~i~~w~~~~~~ 264 (267)
.|+.++|.|. ...|++|+.|..+.+||+..-.
T Consensus 289 ~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~ 321 (364)
T KOG0290|consen 289 SVNGIAWAPHSSSHICTAGDDCQALIWDLQQMP 321 (364)
T ss_pred cccceEecCCCCceeeecCCcceEEEEeccccc
Confidence 9999999996 5689999999999999986543
No 167
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=2.3e-18 Score=131.11 Aligned_cols=199 Identities=18% Similarity=0.285 Sum_probs=147.1
Q ss_pred EEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcc
Q 024451 49 VSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS 128 (267)
Q Consensus 49 v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~ 128 (267)
-.||+|++-+ .+||.|+.||.|.|||+.|-..- ....+|..+|.+++|++ +++.++|++.|..|++||+..+.
T Consensus 26 a~~~~Fs~~G-~~lAvGc~nG~vvI~D~~T~~ia-----r~lsaH~~pi~sl~WS~-dgr~LltsS~D~si~lwDl~~gs 98 (405)
T KOG1273|consen 26 AECCQFSRWG-DYLAVGCANGRVVIYDFDTFRIA-----RMLSAHVRPITSLCWSR-DGRKLLTSSRDWSIKLWDLLKGS 98 (405)
T ss_pred cceEEeccCc-ceeeeeccCCcEEEEEccccchh-----hhhhccccceeEEEecC-CCCEeeeecCCceeEEEeccCCC
Confidence 6799999976 58999999999999999875432 33457999999999996 67889999999999999998665
Q ss_pred cceEEeeccccceeEEEEecC-CCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCC-CCcEEEEEEccCCCEEEEEEeC
Q 024451 129 RAVRTFHGHEGDVNTVKFFPD-GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENE-IPHVTSIAFSISGRLLFAGYSN 206 (267)
Q Consensus 129 ~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~g~~d 206 (267)
+...+. ...+|..+.|+|. .+.+++.-.+..-.+-++..++.. ......... .....+..|++.|+++++|.+.
T Consensus 99 -~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~--~Lp~d~d~dln~sas~~~fdr~g~yIitGtsK 174 (405)
T KOG1273|consen 99 -PLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS--VLPKDDDGDLNSSASHGVFDRRGKYIITGTSK 174 (405)
T ss_pred -ceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee--eccCCCccccccccccccccCCCCEEEEecCc
Confidence 455454 4688999999994 344444444444555555543221 111111111 0112344689999999999999
Q ss_pred CeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451 207 GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG 261 (267)
Q Consensus 207 g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~ 261 (267)
|.+.+||..+.+.+..+.. .-...|..+.++-.|++|+.-+.|+.||.|++.
T Consensus 175 Gkllv~~a~t~e~vas~ri---ts~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 175 GKLLVYDAETLECVASFRI---TSVQAIKQIIVSRKGRFLIINTSDRVIRTYEIS 226 (405)
T ss_pred ceEEEEecchheeeeeeee---chheeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence 9999999998887765421 123578899999999999999999999999864
No 168
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.82 E-value=1.2e-18 Score=133.07 Aligned_cols=232 Identities=19% Similarity=0.293 Sum_probs=166.3
Q ss_pred CCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeE---EEEEEecCCCeeEEEeeCCCeEEEEeC-CCCee
Q 024451 6 SPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYV---SCCQYVPDEDTHLITSSGDQTCVLWDI-TTGLR 81 (267)
Q Consensus 6 ~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v---~~~~~~~~~~~~l~s~~~d~~v~iwd~-~~~~~ 81 (267)
.|+..+.++.+.|.-|++||.-.. +.........|...+ ++++|+|+++ +|+ ++..+.|+++|. +.+..
T Consensus 120 qP~t~l~a~ssr~~PIh~wdaftG-----~lraSy~~ydh~de~taAhsL~Fs~DGe-qlf-aGykrcirvFdt~RpGr~ 192 (406)
T KOG2919|consen 120 QPSTNLFAVSSRDQPIHLWDAFTG-----KLRASYRAYDHQDEYTAAHSLQFSPDGE-QLF-AGYKRCIRVFDTSRPGRD 192 (406)
T ss_pred CCccceeeeccccCceeeeecccc-----ccccchhhhhhHHhhhhheeEEecCCCC-eEe-ecccceEEEeeccCCCCC
Confidence 488899999999999999997542 222222333454443 5799999876 444 678889999999 44433
Q ss_pred EEEeCCc--cccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEee-C
Q 024451 82 TSVFGGE--FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS-D 158 (267)
Q Consensus 82 ~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~ 158 (267)
...+... ...+..+-+.+++++|.+...++.++....+-|+.-. ...++..+.+|.+.|+.+.|+++|+.|.+|. .
T Consensus 193 c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~-~~~pl~llggh~gGvThL~~~edGn~lfsGaRk 271 (406)
T KOG2919|consen 193 CPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDD-GRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARK 271 (406)
T ss_pred CcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecC-CCCceeeecccCCCeeeEEeccCcCeecccccC
Confidence 2222110 0123456678899999888889999988888777643 3457777889999999999999999999998 4
Q ss_pred CCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEE--EccCCCEEEEEEeCCeEEEEeCCcc-ceeeecccccCCccceEE
Q 024451 159 DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIA--FSISGRLLFAGYSNGDCYVWDTLLA-KVVLNLGSLQNSHEGRIT 235 (267)
Q Consensus 159 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~--~s~~~~~l~~g~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~v~ 235 (267)
|-+|..||++....+.--.+.+... .-..+- ..|++++|++|+.+|.|++||++.. ..+.. ...|...++
T Consensus 272 ~dkIl~WDiR~~~~pv~~L~rhv~~---TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv----~~~~sd~vN 344 (406)
T KOG2919|consen 272 DDKILCWDIRYSRDPVYALERHVGD---TNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSV----TGNYSDTVN 344 (406)
T ss_pred CCeEEEEeehhccchhhhhhhhccC---ccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccc----ccccccccc
Confidence 7799999998765443222222221 123444 4689999999999999999998763 22222 246788999
Q ss_pred EEEECCCCCeEEEeECC
Q 024451 236 CLGLSADGSALCTGSWD 252 (267)
Q Consensus 236 ~~~~~p~~~~l~sgs~d 252 (267)
.++++|--.++|++|..
T Consensus 345 gvslnP~mpilatssGq 361 (406)
T KOG2919|consen 345 GVSLNPIMPILATSSGQ 361 (406)
T ss_pred ceecCcccceeeeccCc
Confidence 99999998889988754
No 169
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=1.1e-17 Score=138.62 Aligned_cols=240 Identities=18% Similarity=0.223 Sum_probs=175.7
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
.++|+ +|..|.+.+.+|+|.-||+..- +....+....+.|++++.+|.++ .++.|+.||.+...+...++-
T Consensus 74 ~L~W~-e~~RLFS~g~sg~i~EwDl~~l-------k~~~~~d~~gg~IWsiai~p~~~-~l~IgcddGvl~~~s~~p~~I 144 (691)
T KOG2048|consen 74 SLAWA-EGGRLFSSGLSGSITEWDLHTL-------KQKYNIDSNGGAIWSIAINPENT-ILAIGCDDGVLYDFSIGPDKI 144 (691)
T ss_pred eEEEc-cCCeEEeecCCceEEEEecccC-------ceeEEecCCCcceeEEEeCCccc-eEEeecCCceEEEEecCCceE
Confidence 36788 4666999999999999998752 23344556678999999999764 688899999777777766543
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccce---EEee----ccccceeEEEEecCCCEEE
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV---RTFH----GHEGDVNTVKFFPDGNRFG 154 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~---~~~~----~~~~~i~~~~~~~~~~~l~ 154 (267)
.... .....++++.+++|++. +..+++|+.||.|++||........ .++. .....|+++.|-.+ ..++
T Consensus 145 ~~~r---~l~rq~sRvLslsw~~~-~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~ 219 (691)
T KOG2048|consen 145 TYKR---SLMRQKSRVLSLSWNPT-GTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIA 219 (691)
T ss_pred EEEe---ecccccceEEEEEecCC-ccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEE
Confidence 2211 12234689999999975 4557899999999999997654322 0111 12334778888755 5799
Q ss_pred EeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceE
Q 024451 155 TGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRI 234 (267)
Q Consensus 155 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v 234 (267)
+|..-|+|.+||...+..++.+ ..+...|.+++.++++..+++++.|+.+..|...+.+...........|...|
T Consensus 220 sgDS~G~V~FWd~~~gTLiqS~-----~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdv 294 (691)
T KOG2048|consen 220 SGDSAGTVTFWDSIFGTLIQSH-----SCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDV 294 (691)
T ss_pred EecCCceEEEEcccCcchhhhh-----hhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccc
Confidence 9999999999999988765433 23345699999999999999999999999998766544221222234677789
Q ss_pred EEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451 235 TCLGLSADGSALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 235 ~~~~~~p~~~~l~sgs~dg~i~~w~~~~ 262 (267)
.+++..++ .|++|+.|+++.+-....
T Consensus 295 rs~av~~~--~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 295 RSMAVIEN--ALISGGRDFTLAICSSRE 320 (691)
T ss_pred eeeeeecc--eEEecceeeEEEEccccc
Confidence 99998876 899999999988866543
No 170
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.81 E-value=7.8e-19 Score=144.91 Aligned_cols=246 Identities=23% Similarity=0.346 Sum_probs=165.2
Q ss_pred eCCCCCeEEE--ccCCCeEEEeecCCCCC-CCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 5 FSPTGQSVAC--GGLDSVCSIFNLNSPTD-KDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 5 ~~~~g~~l~~--~~~d~~v~~w~~~~~~~-~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
|+.+....+. +|.-|.|.||++..+.. +++.++ .+ -....|+.+.|.|-+...|+.++.||.|++|.+..+-.
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p---~l-~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl 662 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMP---GL-FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGL 662 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCccccc---cc-ccCceeeecccCCCChHHeeecccCceEEEEEeccCCC
Confidence 3334444443 56789999999977532 222222 12 13456899999998888999999999999999875421
Q ss_pred --EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCC
Q 024451 82 --TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD 159 (267)
Q Consensus 82 --~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 159 (267)
..+-+......|.+.|.++.|+|-....+++++.|.+|++||++.. +....+.+|.+.|..++|+|+|+.+|+.+.|
T Consensus 663 ~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~-~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKD 741 (1012)
T KOG1445|consen 663 PENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANA-KLYSRLVGHTDQIFGIAWSPDGRRIATVCKD 741 (1012)
T ss_pred CcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhh-hhhheeccCcCceeEEEECCCCcceeeeecC
Confidence 1111112235799999999999877788999999999999999754 4566788999999999999999999999999
Q ss_pred CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEe----CCeEEEEeCCccce-eeecccccCCccceE
Q 024451 160 GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS----NGDCYVWDTLLAKV-VLNLGSLQNSHEGRI 234 (267)
Q Consensus 160 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~----dg~i~i~d~~~~~~-~~~~~~~~~~~~~~v 234 (267)
|++++|..+++.+.. +...+.- ...-..+.|.-+|+++++.+- .++|.+||.+.... ......+...- ..+
T Consensus 742 g~~rVy~Prs~e~pv--~Eg~gpv-gtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvap-s~L 817 (1012)
T KOG1445|consen 742 GTLRVYEPRSREQPV--YEGKGPV-GTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAP-SPL 817 (1012)
T ss_pred ceEEEeCCCCCCCcc--ccCCCCc-cCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccC-ccc
Confidence 999999998765431 1111111 112356778889998877543 46888998765321 11111110000 000
Q ss_pred EEEEECCCCC-eEEEeECCCcEEEEec
Q 024451 235 TCLGLSADGS-ALCTGSWDTNLKIWAF 260 (267)
Q Consensus 235 ~~~~~~p~~~-~l~sgs~dg~i~~w~~ 260 (267)
---+.+|.+ ++++|-.|..|.+|.+
T Consensus 818 -vP~YD~Ds~~lfltGKGD~~v~~yEv 843 (1012)
T KOG1445|consen 818 -VPHYDYDSNVLFLTGKGDRFVNMYEV 843 (1012)
T ss_pred -cccccCCCceEEEecCCCceEEEEEe
Confidence 011234443 5667777888888864
No 171
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.81 E-value=1.6e-16 Score=132.80 Aligned_cols=240 Identities=33% Similarity=0.574 Sum_probs=174.7
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCe-eeEEEEEE-ecCCCeeEEEeeC-CCeEEEEeCCC
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK-GYVSCCQY-VPDEDTHLITSSG-DQTCVLWDITT 78 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~-~~~~~~~l~s~~~-d~~v~iwd~~~ 78 (267)
++.|.+.+..++.++.|+.+.+|+..... .....+.++. ..+..+.+ .++....++..+. |+.+++||...
T Consensus 70 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 143 (466)
T COG2319 70 SIAFSPDGELLLSGSSDGTIKLWDLDNGE------KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLST 143 (466)
T ss_pred EEEECCCCcEEEEecCCCcEEEEEcCCCc------eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecC
Confidence 45688999999999999999999986532 1222333322 35555555 6655434555444 99999999987
Q ss_pred -CeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecC-CCeEEEEeCCCcccceEEeeccccceeEEEEecCCC-EEEE
Q 024451 79 -GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC-DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN-RFGT 155 (267)
Q Consensus 79 -~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~ 155 (267)
......+ ..|...+..+.+++... .+++++. |+.+++|+... ......+.+|...+.+++|+|++. .+++
T Consensus 144 ~~~~~~~~-----~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 216 (466)
T COG2319 144 PGKLIRTL-----EGHSESVTSLAFSPDGK-LLASGSSLDGTIKLWDLRT-GKPLSTLAGHTDPVSSLAFSPDGGLLIAS 216 (466)
T ss_pred CCeEEEEE-----ecCcccEEEEEECCCCC-EEEecCCCCCceEEEEcCC-CceEEeeccCCCceEEEEEcCCcceEEEE
Confidence 3333333 36888888999997544 6677775 99999999874 446677777999999999999987 5666
Q ss_pred eeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccce-eeecccccCCccceE
Q 024451 156 GSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV-VLNLGSLQNSHEGRI 234 (267)
Q Consensus 156 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~v 234 (267)
++.|+.+++||...+......... +.... ...|++++.++++++.++.+++||...... .... ..|...+
T Consensus 217 ~~~d~~i~~wd~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~----~~~~~~v 287 (466)
T COG2319 217 GSSDGTIRLWDLSTGKLLRSTLSG----HSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL----SGHSSSV 287 (466)
T ss_pred ecCCCcEEEEECCCCcEEeeecCC----CCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE----ecCCccE
Confidence 699999999998865544421111 11222 227999998999999999999999875554 2222 4578899
Q ss_pred EEEEECCCCCeEEEeECCCcEEEEecCce
Q 024451 235 TCLGLSADGSALCTGSWDTNLKIWAFGGY 263 (267)
Q Consensus 235 ~~~~~~p~~~~l~sgs~dg~i~~w~~~~~ 263 (267)
.++.|+|++..+++++.|+.+++|++...
T Consensus 288 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 316 (466)
T COG2319 288 LSVAFSPDGKLLASGSSDGTVRLWDLETG 316 (466)
T ss_pred EEEEECCCCCEEEEeeCCCcEEEEEcCCC
Confidence 99999999999998999999999986543
No 172
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=1.1e-17 Score=137.11 Aligned_cols=206 Identities=17% Similarity=0.273 Sum_probs=153.4
Q ss_pred cccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCe
Q 024451 39 SRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST 118 (267)
Q Consensus 39 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~ 118 (267)
...++||++.|.|++..|.+ .+|++|+.||+||||.+.++.++.... -.+.|.+++|+|....-++..+.+..
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G-~wlasGsdDGtvriWEi~TgRcvr~~~------~d~~I~~vaw~P~~~~~vLAvA~~~~ 465 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSG-EWLASGSDDGTVRIWEIATGRCVRTVQ------FDSEIRSVAWNPLSDLCVLAVAVGEC 465 (733)
T ss_pred eeeEeccCCeEEEEEecCCc-ceeeecCCCCcEEEEEeecceEEEEEe------ecceeEEEEecCCCCceeEEEEecCc
Confidence 44678999999999999965 699999999999999999998877653 34578899998866555555554444
Q ss_pred EEEEeCCCc------------------------------------ccceEEeeccccceeEEEEecCCCEEEEeeCC---
Q 024451 119 ARLWDTRVA------------------------------------SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD--- 159 (267)
Q Consensus 119 i~iwd~~~~------------------------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--- 159 (267)
+-|-+...+ ...++..-.|...|..+.||..|.||++...+
T Consensus 466 ~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~ 545 (733)
T KOG0650|consen 466 VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGN 545 (733)
T ss_pred eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCc
Confidence 444432211 00112233477889999999999999987654
Q ss_pred CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEE
Q 024451 160 GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGL 239 (267)
Q Consensus 160 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~ 239 (267)
..|-|.++...+...-+. ...+.+.++.|+|...+|++++ ...|++||+...+.+..+ ......|.++++
T Consensus 546 ~~VliHQLSK~~sQ~PF~-----kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL----~tg~kwiS~msi 615 (733)
T KOG0650|consen 546 KSVLIHQLSKRKSQSPFR-----KSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKL----LTGSKWISSMSI 615 (733)
T ss_pred ceEEEEecccccccCchh-----hcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHH----hcCCeeeeeeee
Confidence 568888887544322221 1234689999999999999885 567999998876665544 234567999999
Q ss_pred CCCCCeEEEeECCCcEEEEecC
Q 024451 240 SADGSALCTGSWDTNLKIWAFG 261 (267)
Q Consensus 240 ~p~~~~l~sgs~dg~i~~w~~~ 261 (267)
+|.|.-|+.|+.|+.+..||+.
T Consensus 616 hp~GDnli~gs~d~k~~WfDld 637 (733)
T KOG0650|consen 616 HPNGDNLILGSYDKKMCWFDLD 637 (733)
T ss_pred cCCCCeEEEecCCCeeEEEEcc
Confidence 9999999999999999999874
No 173
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=8.4e-19 Score=152.88 Aligned_cols=203 Identities=16% Similarity=0.252 Sum_probs=157.9
Q ss_pred ceeeCCCC-CeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451 2 TCAFSPTG-QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL 80 (267)
Q Consensus 2 ~~~~~~~g-~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 80 (267)
.+.|++.. +.|++|+.||.|.|||+..+..+ ....-..-...|.+++|+..-...|++++.+|.+.|||++..+
T Consensus 121 gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP-----~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~ 195 (1049)
T KOG0307|consen 121 GLDFNPFQGNLLASGADDGEILIWDLNKPETP-----FTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKK 195 (1049)
T ss_pred eeeccccCCceeeccCCCCcEEEeccCCcCCC-----CCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCC
Confidence 46788765 59999999999999999864422 1111223457899999998777789999999999999998764
Q ss_pred eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCC---eEEEEeCCCcccceEEeeccccceeEEEEecCC-CEEEEe
Q 024451 81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS---TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG-NRFGTG 156 (267)
Q Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~ 156 (267)
.+..+.. . +....+..+.|+|.+...+++++.|. .|.+||+|....+.+.+.+|...|.++.|++.. .+++++
T Consensus 196 pii~ls~--~-~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSs 272 (1049)
T KOG0307|consen 196 PIIKLSD--T-PGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSS 272 (1049)
T ss_pred ccccccc--C-CCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcc
Confidence 4333321 1 11244778999998877777776554 599999998888889999999999999999965 889999
Q ss_pred eCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCC-EEEEEEeCCeEEEEeCCcc
Q 024451 157 SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLA 217 (267)
Q Consensus 157 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~g~~dg~i~i~d~~~~ 217 (267)
+.|+.|.+|+..+++.+..+.. ...++..+.|.|... .+++.+-||.|-||.++..
T Consensus 273 gkD~~ii~wN~~tgEvl~~~p~-----~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 273 GKDNRIICWNPNTGEVLGELPA-----QGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred cCCCCeeEecCCCceEeeecCC-----CCcceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence 9999999999999877654422 234789999999877 7778889999999987643
No 174
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=1.3e-17 Score=144.65 Aligned_cols=250 Identities=18% Similarity=0.267 Sum_probs=161.1
Q ss_pred eeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccC---CeeeEEEEEEec-CCCeeEEEeeCCCeEEEEeCC-
Q 024451 3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSG---HKGYVSCCQYVP-DEDTHLITSSGDQTCVLWDIT- 77 (267)
Q Consensus 3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~---h~~~v~~~~~~~-~~~~~l~s~~~d~~v~iwd~~- 77 (267)
+.|+|-...++++.....+++||.+... ....+.. -...|+.+.+.. ++..++++|+.||.||||+--
T Consensus 1070 ~~~hpf~p~i~~ad~r~~i~vwd~e~~~-------~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~ 1142 (1387)
T KOG1517|consen 1070 LKFHPFEPQIAAADDRERIRVWDWEKGR-------LLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYA 1142 (1387)
T ss_pred eeecCCCceeEEcCCcceEEEEecccCc-------eeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccc
Confidence 4688888899999988899999987643 1112211 224567766653 445689999999999999653
Q ss_pred CC--eeEEEeCCcc----ccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEec-CC
Q 024451 78 TG--LRTSVFGGEF----QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DG 150 (267)
Q Consensus 78 ~~--~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~-~~ 150 (267)
.. ....+-.... ..+..+.-.-++|....+.+++ +|.-..|+|||............+-...++++.-+. .|
T Consensus 1143 ~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~-tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~g 1221 (1387)
T KOG1517|consen 1143 DKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLV-TGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHG 1221 (1387)
T ss_pred cccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEe-cCCeeEEEEEecccceeEeecccCCCccceeecccccCC
Confidence 21 1111100000 0112222234556655555554 444779999998754332222223344456665443 47
Q ss_pred CEEEEeeCCCcEEEEeCCCCee--eEEEEeecCCCCCCcEEEEEEccCCCE-EEEEEeCCeEEEEeCCccceeeeccccc
Q 024451 151 NRFGTGSDDGTCRLFDIRTGHQ--LQVYYQQHGENEIPHVTSIAFSISGRL-LFAGYSNGDCYVWDTLLAKVVLNLGSLQ 227 (267)
Q Consensus 151 ~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~g~~dg~i~i~d~~~~~~~~~~~~~~ 227 (267)
+.+++|..||.+++||.+.... ....+.+|. ...+|..+.+-++|-- |++|+.+|.|++||++... ..++..+.
T Consensus 1222 n~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~--~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~-~e~~~~iv 1298 (1387)
T KOG1517|consen 1222 NIIAAGFADGSVRVYDRRMAPPDSLVCVYREHN--DVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSS-KETFLTIV 1298 (1387)
T ss_pred ceEEEeecCCceEEeecccCCccccceeecccC--CcccceeEEeecCCCcceeeeccCCeEEEEecccCc-ccccceee
Confidence 9999999999999999886543 233333332 2234889999887765 9999999999999987642 11221111
Q ss_pred C--CccceEEEEEECCCCCeEEEeECCCcEEEEecCceE
Q 024451 228 N--SHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGYR 264 (267)
Q Consensus 228 ~--~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~~ 264 (267)
. ...+.++++..+++...+|+|+. +.|+||+..|-+
T Consensus 1299 ~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~ 1336 (1387)
T KOG1517|consen 1299 AHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQ 1336 (1387)
T ss_pred eccccCccceeeeeccCCCeeeecCc-ceEEEEecChhh
Confidence 1 11336999999999999999998 999999987643
No 175
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.80 E-value=8.9e-18 Score=126.55 Aligned_cols=207 Identities=18% Similarity=0.292 Sum_probs=150.1
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
|+.|.|++..|++.. |..|.+|+++.......+++... -.+|....++-+|+|..+..-+....|++++.||.++..+
T Consensus 128 cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~-s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~ 205 (370)
T KOG1007|consen 128 CVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSE-SAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKK 205 (370)
T ss_pred eEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccc-cccccceecccccCCCCccceEEEeCCCcEEEEEccchhh
Confidence 567999999999876 88899999986432222222221 2346777888999994333445566799999999998765
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecC-CCEEEEeeCCC
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD-GNRFGTGSDDG 160 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~ 160 (267)
...+. .+|...+..+.|+|.-..++++++.||.|+|||.+..+.++..+.+|.-.|.++.|+|. ..++.+++.|.
T Consensus 206 ~~sI~----dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs 281 (370)
T KOG1007|consen 206 NNSIE----DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDS 281 (370)
T ss_pred hcchh----hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCc
Confidence 44332 56888899999999888899999999999999999888889999999999999999995 46788999999
Q ss_pred cEEEEeCCCCeeeEEEEeecC------------------------CCCCCcEEEEEEccCCCEEEE-EEeCCeEEEEeC
Q 024451 161 TCRLFDIRTGHQLQVYYQQHG------------------------ENEIPHVTSIAFSISGRLLFA-GYSNGDCYVWDT 214 (267)
Q Consensus 161 ~i~iwd~~~~~~~~~~~~~~~------------------------~~~~~~v~~~~~s~~~~~l~~-g~~dg~i~i~d~ 214 (267)
.|.+|...+......+..... ..+...|.+++||....++++ -+.||.+.|=.+
T Consensus 282 ~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 282 AVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSV 360 (370)
T ss_pred eeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecC
Confidence 999998543221100000000 012235788899887777655 467887766553
No 176
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.80 E-value=5.4e-18 Score=129.71 Aligned_cols=217 Identities=18% Similarity=0.296 Sum_probs=157.4
Q ss_pred cccCCeeeEEEEEEec----CCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCC---CCeEEEEe
Q 024451 41 MLSGHKGYVSCCQYVP----DEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS---NSRMFVSG 113 (267)
Q Consensus 41 ~~~~h~~~v~~~~~~~----~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~s~ 113 (267)
...+|+.+|+.++|++ ++.+.+++++ .+.+.||+.....-...++......|.+....++|.-. .+.+++.+
T Consensus 33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~ 111 (385)
T KOG1034|consen 33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG 111 (385)
T ss_pred hhccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence 3467999999999984 2234455544 45788887765433333332222346677777777521 35678889
Q ss_pred cCCCeEEEEeCCCcccceEEeeccccceeEEEEecC-CCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEE
Q 024451 114 SCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD-GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIA 192 (267)
Q Consensus 114 ~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 192 (267)
|.-|.|+|.|+.. .+....+.+|...|+.+.++|+ .++++++++|.+||+|++++..++..+-. .+++...|.++.
T Consensus 112 G~~GvIrVid~~~-~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG--~egHrdeVLSvD 188 (385)
T KOG1034|consen 112 GYLGVIRVIDVVS-GQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGG--VEGHRDEVLSVD 188 (385)
T ss_pred cceeEEEEEecch-hhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecc--cccccCcEEEEE
Confidence 9999999999864 4567788999999999999996 47899999999999999999888776643 345677899999
Q ss_pred EccCCCEEEEEEeCCeEEEEeCCccceeeec---------------c----c-----ccCCccceEEEEEECCCCCeEEE
Q 024451 193 FSISGRLLFAGYSNGDCYVWDTLLAKVVLNL---------------G----S-----LQNSHEGRITCLGLSADGSALCT 248 (267)
Q Consensus 193 ~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~---------------~----~-----~~~~~~~~v~~~~~~p~~~~l~s 248 (267)
|++++.+|++++.|..|.+|++...+....+ . . -..-|...|-|+.|- |++++|
T Consensus 189 ~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilS 266 (385)
T KOG1034|consen 189 FSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILS 266 (385)
T ss_pred EcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheee
Confidence 9999999999999999999998632211000 0 0 111255555555554 689999
Q ss_pred eECCCcEEEEecCce
Q 024451 249 GSWDTNLKIWAFGGY 263 (267)
Q Consensus 249 gs~dg~i~~w~~~~~ 263 (267)
=|.++.|..|.++.+
T Consensus 267 kscenaI~~w~pgkl 281 (385)
T KOG1034|consen 267 KSCENAIVCWKPGKL 281 (385)
T ss_pred cccCceEEEEecchh
Confidence 999999999987643
No 177
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.79 E-value=7.1e-16 Score=128.81 Aligned_cols=237 Identities=36% Similarity=0.620 Sum_probs=174.8
Q ss_pred CCCCC-eEEEccC-CCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeC-CCeEEEEeCCCCeeE
Q 024451 6 SPTGQ-SVACGGL-DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG-DQTCVLWDITTGLRT 82 (267)
Q Consensus 6 ~~~g~-~l~~~~~-d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-d~~v~iwd~~~~~~~ 82 (267)
.+++. .++..+. |+.+.+|+.... ......+..|...|..+.|.|++. .+++++. |+.+++|+..++...
T Consensus 119 ~~~~~~~~~~~~~~d~~~~~~~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 191 (466)
T COG2319 119 SPDGNSILLASSSLDGTVKLWDLSTP------GKLIRTLEGHSESVTSLAFSPDGK-LLASGSSLDGTIKLWDLRTGKPL 191 (466)
T ss_pred CCCcceEEeccCCCCccEEEEEecCC------CeEEEEEecCcccEEEEEECCCCC-EEEecCCCCCceEEEEcCCCceE
Confidence 67777 5555455 999999998641 124566788999999999999765 6777775 999999999875555
Q ss_pred EEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceE-EeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451 83 SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVR-TFHGHEGDVNTVKFFPDGNRFGTGSDDGT 161 (267)
Q Consensus 83 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 161 (267)
..+ .+|...+..+.+.+.....+++++.|+.+++||... ..... .+.+|.... -..|+|++..+++++.|+.
T Consensus 192 ~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~ 264 (466)
T COG2319 192 STL-----AGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLST-GKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGT 264 (466)
T ss_pred Eee-----ccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCC-CcEEeeecCCCCcce-eEeECCCCCEEEEecCCCc
Confidence 544 348889999999954332555669999999998763 33444 577777765 4489999989999999999
Q ss_pred EEEEeCCCCee-eEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEEC
Q 024451 162 CRLFDIRTGHQ-LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS 240 (267)
Q Consensus 162 i~iwd~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~ 240 (267)
+++||.+.... .... . .+...+.++.|+|++..+++++.|+.+.+||........... ...|...+..+.+.
T Consensus 265 ~~~~~~~~~~~~~~~~-~----~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 337 (466)
T COG2319 265 IRLWDLRSSSSLLRTL-S----GHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT--LKGHEGPVSSLSFS 337 (466)
T ss_pred EEEeeecCCCcEEEEE-e----cCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee--ecccCCceEEEEEC
Confidence 99999987654 2222 1 224568899999988888888888889999887665544432 23566678999994
Q ss_pred CCCCeEEEe-ECCCcEEEEecCce
Q 024451 241 ADGSALCTG-SWDTNLKIWAFGGY 263 (267)
Q Consensus 241 p~~~~l~sg-s~dg~i~~w~~~~~ 263 (267)
+++..++.+ ..|+.+.+|+....
T Consensus 338 ~~~~~~~~~~~~d~~~~~~~~~~~ 361 (466)
T COG2319 338 PDGSLLVSGGSDDGTIRLWDLRTG 361 (466)
T ss_pred CCCCEEEEeecCCCcEEeeecCCC
Confidence 343455555 68899999986543
No 178
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=8.6e-18 Score=137.73 Aligned_cols=239 Identities=14% Similarity=0.209 Sum_probs=167.6
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
++...|.|.+|++|+.||+|+||.+.+.. +.++.. -.+.|.|++|+|....-++++..+..+.|-|..-+.+
T Consensus 405 ~iSvdp~G~wlasGsdDGtvriWEi~TgR-------cvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~ 476 (733)
T KOG0650|consen 405 SISVDPSGEWLASGSDDGTVRIWEIATGR-------CVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDR 476 (733)
T ss_pred EEEecCCcceeeecCCCCcEEEEEeecce-------EEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeCccccch
Confidence 45677999999999999999999987532 333322 2357999999997654444444444455554432211
Q ss_pred EEE---------e-----C----Cc--------------cccCCccceEEEEEeCCCCeEEEEecC---CCeEEEEeCCC
Q 024451 82 TSV---------F-----G----GE--------------FQSGHTADVLSVSISGSNSRMFVSGSC---DSTARLWDTRV 126 (267)
Q Consensus 82 ~~~---------~-----~----~~--------------~~~~~~~~i~~~~~~~~~~~~~~s~~~---d~~i~iwd~~~ 126 (267)
+.. . . .. ..-.|...|..+.|+.. +.+|++... ...|.|.++..
T Consensus 477 ~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrk-GDYlatV~~~~~~~~VliHQLSK 555 (733)
T KOG0650|consen 477 LEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRK-GDYLATVMPDSGNKSVLIHQLSK 555 (733)
T ss_pred hhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecC-CceEEEeccCCCcceEEEEeccc
Confidence 100 0 0 00 01136778889999964 556776544 34688888863
Q ss_pred cccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeC
Q 024451 127 ASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN 206 (267)
Q Consensus 127 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d 206 (267)
. +....+.-..+.+.++.|+|...+|+++++ ..|+|||+........+ ......+..++.+|.|..|+.|+.|
T Consensus 556 ~-~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL-----~tg~kwiS~msihp~GDnli~gs~d 628 (733)
T KOG0650|consen 556 R-KSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKL-----LTGSKWISSMSIHPNGDNLILGSYD 628 (733)
T ss_pred c-cccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHH-----hcCCeeeeeeeecCCCCeEEEecCC
Confidence 2 233445445677999999999888888775 59999999764433222 1223468999999999999999999
Q ss_pred CeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEe
Q 024451 207 GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWA 259 (267)
Q Consensus 207 g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~ 259 (267)
+.+..||+.....+.+.. ..|...+.+++|++.-.++++||.||++.||.
T Consensus 629 ~k~~WfDldlsskPyk~l---r~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 629 KKMCWFDLDLSSKPYKTL---RLHEKAVRSVAFHKRYPLFASGSDDGTVIVFH 678 (733)
T ss_pred CeeEEEEcccCcchhHHh---hhhhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence 999999987654333322 46899999999999999999999999999985
No 179
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.78 E-value=6.2e-17 Score=122.15 Aligned_cols=240 Identities=16% Similarity=0.231 Sum_probs=164.2
Q ss_pred eeeCCCC-----CeEEEccCCCeEEEeecCCCCCCCCCCcccc-----cccCCeeeEEEEEEecCCCeeEEEeeCCCeEE
Q 024451 3 CAFSPTG-----QSVACGGLDSVCSIFNLNSPTDKDGNLPVSR-----MLSGHKGYVSCCQYVPDEDTHLITSSGDQTCV 72 (267)
Q Consensus 3 ~~~~~~g-----~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~-----~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~ 72 (267)
+-|.|+. ++|||.| ..+|+|.+...+.+ ..+.. ....+..++++..|+.-+.+++.++|-|-+..
T Consensus 102 ~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~---~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCT 176 (364)
T KOG0290|consen 102 LMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESR---VELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCT 176 (364)
T ss_pred eEecCCccccCcchhhccc--CeEEEEeccCcCCc---eehhhhhccCcccccCCcccccccccCCcceeEeecccCeEE
Confidence 4466655 3566544 36999998753211 11111 23356678999999877778999999999999
Q ss_pred EEeCCCCee--EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeecc--ccceeEEEEec
Q 024451 73 LWDITTGLR--TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH--EGDVNTVKFFP 148 (267)
Q Consensus 73 iwd~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~i~~~~~~~ 148 (267)
|||++++.. +.+ + .-+|...|..++|...+.++|++.|.||.+|+||++......-.+... ..+...++|++
T Consensus 177 iWdie~~~~~~vkT---Q-LIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnk 252 (364)
T KOG0290|consen 177 IWDIETGVSGTVKT---Q-LIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNK 252 (364)
T ss_pred EEEEeeccccceee---E-EEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCc
Confidence 999998722 111 1 126999999999998778899999999999999998544333333322 24567788877
Q ss_pred -CCCEEEEeeCC-CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCC-CEEEEEEeCCeEEEEeCCccce-eeecc
Q 024451 149 -DGNRFGTGSDD-GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG-RLLFAGYSNGDCYVWDTLLAKV-VLNLG 224 (267)
Q Consensus 149 -~~~~l~~~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~g~~dg~i~i~d~~~~~~-~~~~~ 224 (267)
+-+++|+-..| ..|.|.|++....... ...++...|..++|.|.. ..|.+++.|.+..+||+.+.-. .....
T Consensus 253 qDpnymATf~~dS~~V~iLDiR~P~tpva----~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dP 328 (364)
T KOG0290|consen 253 QDPNYMATFAMDSNKVVILDIRVPCTPVA----RLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDP 328 (364)
T ss_pred CCchHHhhhhcCCceEEEEEecCCCccee----hhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCc
Confidence 45778876654 5799999987654332 123455689999999975 5788888999999999865322 11111
Q ss_pred cccCCccceEEEEEECC-CCCeEEEeECCCcEE
Q 024451 225 SLQNSHEGRITCLGLSA-DGSALCTGSWDTNLK 256 (267)
Q Consensus 225 ~~~~~~~~~v~~~~~~p-~~~~l~sgs~dg~i~ 256 (267)
.+...-+++|+.+.|+| .+..++.+.. +.+.
T Consensus 329 ilay~a~~EVNqi~Ws~~~~Dwiai~~~-kkle 360 (364)
T KOG0290|consen 329 ILAYTAGGEVNQIQWSSSQPDWIAICFG-KKLE 360 (364)
T ss_pred hhhhhccceeeeeeecccCCCEEEEEec-Ceee
Confidence 11123567899999996 4667887754 4433
No 180
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.78 E-value=4.9e-16 Score=127.01 Aligned_cols=245 Identities=11% Similarity=0.145 Sum_probs=150.1
Q ss_pred eeeCCCCCeEEEc-cCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEee-CCCeEEEEeCCCCe
Q 024451 3 CAFSPTGQSVACG-GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS-GDQTCVLWDITTGL 80 (267)
Q Consensus 3 ~~~~~~g~~l~~~-~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-~d~~v~iwd~~~~~ 80 (267)
++++|++++|..+ ..++.|.+|++... +......... ..+....+.|+|++. ++++++ .++.|.+|++++..
T Consensus 40 l~~spd~~~lyv~~~~~~~i~~~~~~~~----g~l~~~~~~~-~~~~p~~i~~~~~g~-~l~v~~~~~~~v~v~~~~~~g 113 (330)
T PRK11028 40 MVISPDKRHLYVGVRPEFRVLSYRIADD----GALTFAAESP-LPGSPTHISTDHQGR-FLFSASYNANCVSVSPLDKDG 113 (330)
T ss_pred EEECCCCCEEEEEECCCCcEEEEEECCC----CceEEeeeec-CCCCceEEEECCCCC-EEEEEEcCCCeEEEEEECCCC
Confidence 5789999988665 45888999998631 1111111111 112345688999875 455544 58999999996421
Q ss_pred ----eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccce----EEee-ccccceeEEEEecCCC
Q 024451 81 ----RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV----RTFH-GHEGDVNTVKFFPDGN 151 (267)
Q Consensus 81 ----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~----~~~~-~~~~~i~~~~~~~~~~ 151 (267)
....+ .+......+.++|....++++...++.|.+||+....... .... ........+.|+|+++
T Consensus 114 ~~~~~~~~~------~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~ 187 (330)
T PRK11028 114 IPVAPIQII------EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQ 187 (330)
T ss_pred CCCCceeec------cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCC
Confidence 11111 1222355677887655566677778999999986422111 0011 1123457899999999
Q ss_pred EEEEeeC-CCcEEEEeCCCC-eeeEEEEe--ecCC--CCCCcEEEEEEccCCCEEEEEEe-CCeEEEEeCCccceeee-c
Q 024451 152 RFGTGSD-DGTCRLFDIRTG-HQLQVYYQ--QHGE--NEIPHVTSIAFSISGRLLFAGYS-NGDCYVWDTLLAKVVLN-L 223 (267)
Q Consensus 152 ~l~~~~~-d~~i~iwd~~~~-~~~~~~~~--~~~~--~~~~~v~~~~~s~~~~~l~~g~~-dg~i~i~d~~~~~~~~~-~ 223 (267)
+++++.. +++|.+||++.. ..+..... .... ........+.++|++++++++.. ++.|.+|++........ .
T Consensus 188 ~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~ 267 (330)
T PRK11028 188 YAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFE 267 (330)
T ss_pred EEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEe
Confidence 9987775 899999999742 11111111 0100 11123346889999999998864 68999999754321111 1
Q ss_pred ccccCCccceEEEEEECCCCCeEEEeEC-CCcEEEEecC
Q 024451 224 GSLQNSHEGRITCLGLSADGSALCTGSW-DTNLKIWAFG 261 (267)
Q Consensus 224 ~~~~~~~~~~v~~~~~~p~~~~l~sgs~-dg~i~~w~~~ 261 (267)
..... . .....+.++|+|++|+++.. +++|.+|+++
T Consensus 268 ~~~~~-~-~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 268 GHQPT-E-TQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EEEec-c-ccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 11111 1 13346899999999998775 8999999874
No 181
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=1.1e-17 Score=131.75 Aligned_cols=201 Identities=20% Similarity=0.275 Sum_probs=145.0
Q ss_pred EEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCccc
Q 024451 50 SCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR 129 (267)
Q Consensus 50 ~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~ 129 (267)
.+++|++++ ..+++++.||++|+|+.++......+ ..|...|.++.|++ +++.+++-+.| ..+||+++...
T Consensus 148 k~vaf~~~g-s~latgg~dg~lRv~~~Ps~~t~l~e-----~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~- 218 (398)
T KOG0771|consen 148 KVVAFNGDG-SKLATGGTDGTLRVWEWPSMLTILEE-----IAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGA- 218 (398)
T ss_pred eEEEEcCCC-CEeeeccccceEEEEecCcchhhhhh-----HhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCc-
Confidence 568888865 58999999999999997654433222 46888999999996 56788999999 99999998653
Q ss_pred ceEEee--ccccceeEEEEecCC-----CEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEE
Q 024451 130 AVRTFH--GHEGDVNTVKFFPDG-----NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFA 202 (267)
Q Consensus 130 ~~~~~~--~~~~~i~~~~~~~~~-----~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 202 (267)
.+.... ........+.|..++ ..++....-+.|+.||+...+.-..............|++++.+.+|++++.
T Consensus 219 ~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~Al 298 (398)
T KOG0771|consen 219 ALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLAL 298 (398)
T ss_pred hhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEE
Confidence 222222 222335677887766 2334445667788877654322111111111112235899999999999999
Q ss_pred EEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451 203 GYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 203 g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~ 262 (267)
|+.||.|.|++...-+.+.- .+..|...|+.+.|+|+.+++++-|.|.++.+..+..
T Consensus 299 GT~dGsVai~~~~~lq~~~~---vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 299 GTMDGSVAIYDAKSLQRLQY---VKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred eccCCcEEEEEeceeeeeEe---ehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 99999999999876655443 3467999999999999999999999999999987654
No 182
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.77 E-value=1.4e-17 Score=135.07 Aligned_cols=208 Identities=19% Similarity=0.296 Sum_probs=151.8
Q ss_pred CCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCc
Q 024451 9 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE 88 (267)
Q Consensus 9 g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~ 88 (267)
...++..+.||.+.+-+-.. .+.+...+|.+.+.|-+|+|++. -|+++++||.|+||.- +|....++.
T Consensus 75 ~d~~~i~s~DGkf~il~k~~--------rVE~sv~AH~~A~~~gRW~~dGt-gLlt~GEDG~iKiWSr-sGMLRStl~-- 142 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNKSA--------RVERSISAHAAAISSGRWSPDGA-GLLTAGEDGVIKIWSR-SGMLRSTVV-- 142 (737)
T ss_pred cceEEEEcCCceEEEecccc--------hhhhhhhhhhhhhhhcccCCCCc-eeeeecCCceEEEEec-cchHHHHHh--
Confidence 35677778899988886432 36678889999999999999875 5889999999999974 444333321
Q ss_pred cccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCC
Q 024451 89 FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR 168 (267)
Q Consensus 89 ~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~ 168 (267)
.....|.|++|.|.+...+.+.+ +.+.|-.+....+ +-..++|.+.|.++.|++..+.+++|++|-..++||-.
T Consensus 143 ---Q~~~~v~c~~W~p~S~~vl~c~g--~h~~IKpL~~n~k-~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~ 216 (737)
T KOG1524|consen 143 ---QNEESIRCARWAPNSNSIVFCQG--GHISIKPLAANSK-IIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ 216 (737)
T ss_pred ---hcCceeEEEEECCCCCceEEecC--CeEEEeecccccc-eeEEeccCcEEEEeecCccccceeecCCceeEEeeccc
Confidence 24567999999987777665544 3555555554343 44567899999999999999999999999999999975
Q ss_pred CCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEE
Q 024451 169 TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCT 248 (267)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s 248 (267)
. ..+ +.. ..+..+|++++|.|+ ..++.|+.+ .++ +...-.+.|..++|||||..+++
T Consensus 217 G-~~L---f~S--~~~ey~ITSva~npd-~~~~v~S~n-t~R---------------~~~p~~GSifnlsWS~DGTQ~a~ 273 (737)
T KOG1524|consen 217 G-ANL---FTS--AAEEYAITSVAFNPE-KDYLLWSYN-TAR---------------FSSPRVGSIFNLSWSADGTQATC 273 (737)
T ss_pred C-ccc---ccC--Chhccceeeeeeccc-cceeeeeee-eee---------------ecCCCccceEEEEEcCCCceeec
Confidence 3 322 111 123357999999999 555555422 222 11334568999999999999999
Q ss_pred eECCCcEEE
Q 024451 249 GSWDTNLKI 257 (267)
Q Consensus 249 gs~dg~i~~ 257 (267)
|...|.+.+
T Consensus 274 gt~~G~v~~ 282 (737)
T KOG1524|consen 274 GTSTGQLIV 282 (737)
T ss_pred cccCceEEE
Confidence 998887654
No 183
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=3.4e-17 Score=133.21 Aligned_cols=222 Identities=23% Similarity=0.357 Sum_probs=155.2
Q ss_pred ccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeC-CCCeEEEEecCC
Q 024451 38 VSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISG-SNSRMFVSGSCD 116 (267)
Q Consensus 38 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~s~~~d 116 (267)
....+.||++.|.|+.|+.++ .+|++||.|-.+.|||.-..+.+..+. .+|...|+++.|.| .+++++++|..|
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG-~lL~SGSDD~r~ivWd~~~~KllhsI~----TgHtaNIFsvKFvP~tnnriv~sgAgD 116 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADG-ELLASGSDDTRLIVWDPFEYKLLHSIS----TGHTANIFSVKFVPYTNNRIVLSGAGD 116 (758)
T ss_pred hhhhhccccceecceeecCCC-CEEeecCCcceEEeecchhcceeeeee----cccccceeEEeeeccCCCeEEEeccCc
Confidence 455788999999999999876 589999999999999998666655543 58999999999987 467889999999
Q ss_pred CeEEEEeCCCc---------ccceEEeeccccceeEEEEecCC-CEEEEeeCCCcEEEEeCCCCeeeEE---EEee--cC
Q 024451 117 STARLWDTRVA---------SRAVRTFHGHEGDVNTVKFFPDG-NRFGTGSDDGTCRLFDIRTGHQLQV---YYQQ--HG 181 (267)
Q Consensus 117 ~~i~iwd~~~~---------~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~---~~~~--~~ 181 (267)
..|+++|+... ....+....|...|..++..|++ ..|.++++||+|+-+|++....-.. .... .-
T Consensus 117 k~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny 196 (758)
T KOG1310|consen 117 KLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNY 196 (758)
T ss_pred ceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHh
Confidence 99999998631 22344556788888889998987 7899999999999999986321100 0000 00
Q ss_pred CCCCCcEEEEEEccCCC-EEEEEEeCCeEEEEeCCccceee------e---------cccccCCcc-----------ceE
Q 024451 182 ENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAKVVL------N---------LGSLQNSHE-----------GRI 234 (267)
Q Consensus 182 ~~~~~~v~~~~~s~~~~-~l~~g~~dg~i~i~d~~~~~~~~------~---------~~~~~~~~~-----------~~v 234 (267)
........++..+|... +|++|++|-..++||.+...... . ...+...|. ..+
T Consensus 197 ~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~ 276 (758)
T KOG1310|consen 197 NPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCC 276 (758)
T ss_pred chhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeee
Confidence 00112356788888754 78889999999999942211000 0 000001111 135
Q ss_pred EEEEECCCCCeEEEeECCCcEEEEecCceE
Q 024451 235 TCLGLSADGSALCTGSWDTNLKIWAFGGYR 264 (267)
Q Consensus 235 ~~~~~~p~~~~l~sgs~dg~i~~w~~~~~~ 264 (267)
+-+.|+|+|..|+..=..-.|.+++++.-+
T Consensus 277 t~vtfnpNGtElLvs~~gEhVYlfdvn~~~ 306 (758)
T KOG1310|consen 277 TYVTFNPNGTELLVSWGGEHVYLFDVNEDK 306 (758)
T ss_pred EEEEECCCCcEEEEeeCCeEEEEEeecCCC
Confidence 678999999877654334578888876443
No 184
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=2.4e-17 Score=129.84 Aligned_cols=199 Identities=22% Similarity=0.276 Sum_probs=139.1
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
+.+|+++|..|++++.||++|+|+.+.. ........|...|.++.|+|++ .+|++-+.| ..++|+.+++..
T Consensus 149 ~vaf~~~gs~latgg~dg~lRv~~~Ps~-------~t~l~e~~~~~eV~DL~FS~dg-k~lasig~d-~~~VW~~~~g~~ 219 (398)
T KOG0771|consen 149 VVAFNGDGSKLATGGTDGTLRVWEWPSM-------LTILEEIAHHAEVKDLDFSPDG-KFLASIGAD-SARVWSVNTGAA 219 (398)
T ss_pred EEEEcCCCCEeeeccccceEEEEecCcc-------hhhhhhHhhcCccccceeCCCC-cEEEEecCC-ceEEEEeccCch
Confidence 5789999999999999999999997542 2344567899999999999976 589999999 999999998843
Q ss_pred EEEeCCccccCCccceEEEEEeCCC---C-eEEEEecCCCeEEEEeCCCccc----ceEEeeccccceeEEEEecCCCEE
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSN---S-RMFVSGSCDSTARLWDTRVASR----AVRTFHGHEGDVNTVKFFPDGNRF 153 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~---~-~~~~s~~~d~~i~iwd~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l 153 (267)
...... .........+.|...+ . ++++....-+.|+.|++..... ..++.......|.+++.+++|+++
T Consensus 220 ~a~~t~---~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~ 296 (398)
T KOG0771|consen 220 LARKTP---FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFL 296 (398)
T ss_pred hhhcCC---cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEE
Confidence 322210 1122223334443221 1 2222333444566655432221 122222233579999999999999
Q ss_pred EEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCc
Q 024451 154 GTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL 216 (267)
Q Consensus 154 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~ 216 (267)
+.|+.||.|.|++..+-+......+.| ...|+.+.|+|+.+++++-+.+....+..+..
T Consensus 297 AlGT~dGsVai~~~~~lq~~~~vk~aH----~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 297 ALGTMDGSVAIYDAKSLQRLQYVKEAH----LGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEeccCCcEEEEEeceeeeeEeehhhh----eeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999999999999998777665554433 34799999999999999988888888776543
No 185
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.76 E-value=1.1e-17 Score=138.23 Aligned_cols=207 Identities=17% Similarity=0.256 Sum_probs=147.6
Q ss_pred CceeeCC-CCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCC
Q 024451 1 MTCAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG 79 (267)
Q Consensus 1 ~~~~~~~-~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~ 79 (267)
++++|.| |...|+.++.||.|++|.+......+..+.....+.+|...|++++|+|--...|++++.|.+|++||+.+.
T Consensus 631 tDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~ 710 (1012)
T KOG1445|consen 631 TDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANA 710 (1012)
T ss_pred eecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhh
Confidence 4578887 558899999999999999987654555556677889999999999999966668999999999999999987
Q ss_pred eeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccc-cceeEEEEecCCCEEEEeeC
Q 024451 80 LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE-GDVNTVKFFPDGNRFGTGSD 158 (267)
Q Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~ 158 (267)
.....+ .+|.+.|..++|++ +++.+++.+.||+|++|+.+....++..-.+.. ..--.+.|--+|.++++.+.
T Consensus 711 ~~~~~l-----~gHtdqIf~~AWSp-dGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gf 784 (1012)
T KOG1445|consen 711 KLYSRL-----VGHTDQIFGIAWSP-DGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGF 784 (1012)
T ss_pred hhhhee-----ccCcCceeEEEECC-CCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecc
Confidence 654444 47999999999996 578899999999999999876555554333222 22345778789999888776
Q ss_pred CC----cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCC-EEEEEEeCCeEEEEeCC
Q 024451 159 DG----TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTL 215 (267)
Q Consensus 159 d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~g~~dg~i~i~d~~ 215 (267)
|+ .|.+||-.+.............. ..+.--.+++|.+ .+++|-.|..|++|.+.
T Consensus 785 dk~SeRQv~~Y~Aq~l~~~pl~t~~lDva--ps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~ 844 (1012)
T KOG1445|consen 785 DKSSERQVQMYDAQTLDLRPLYTQVLDVA--PSPLVPHYDYDSNVLFLTGKGDRFVNMYEVI 844 (1012)
T ss_pred cccchhhhhhhhhhhccCCcceeeeeccc--CccccccccCCCceEEEecCCCceEEEEEec
Confidence 54 58888865432111111100000 0000112344544 56778889999999864
No 186
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.73 E-value=1.4e-15 Score=128.38 Aligned_cols=214 Identities=14% Similarity=0.126 Sum_probs=139.0
Q ss_pred CCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCC---CeEEEEeCCCCeeEEEeCCccccCCc
Q 024451 18 DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD---QTCVLWDITTGLRTSVFGGEFQSGHT 94 (267)
Q Consensus 18 d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d---~~v~iwd~~~~~~~~~~~~~~~~~~~ 94 (267)
+..|.+||..... .+.+..|...+.+..|+|++. .|+..+.+ ..|++||+.++....... ..++
T Consensus 183 ~~~i~i~d~dg~~--------~~~lt~~~~~v~~p~wSPDG~-~la~~s~~~~~~~i~i~dl~tg~~~~l~~---~~g~- 249 (429)
T PRK01742 183 PYEVRVADYDGFN--------QFIVNRSSQPLMSPAWSPDGS-KLAYVSFENKKSQLVVHDLRSGARKVVAS---FRGH- 249 (429)
T ss_pred eEEEEEECCCCCC--------ceEeccCCCccccceEcCCCC-EEEEEEecCCCcEEEEEeCCCCceEEEec---CCCc-
Confidence 5789999876422 234567788899999999875 56655543 479999998875433321 1123
Q ss_pred cceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEee-CCCcEEEEeCCCCeee
Q 024451 95 ADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGHQL 173 (267)
Q Consensus 95 ~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~ 173 (267)
...+.|+|.+..++.+.+.+|.+.||.+.........+..+...+....|+|+|+.++..+ .++..+||++......
T Consensus 250 --~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~ 327 (429)
T PRK01742 250 --NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG 327 (429)
T ss_pred --cCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 2357788755444444557887666643222233455556666788999999999877655 5788899987542221
Q ss_pred EEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCC
Q 024451 174 QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT 253 (267)
Q Consensus 174 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg 253 (267)
..... . . . ....|+|+|+.|+..+.++ +.+||+..++...... .+ ....+.|+|||++|+.++.++
T Consensus 328 ~~~l~-~-~---~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~----~~--~~~~~~~sPdG~~i~~~s~~g 393 (429)
T PRK01742 328 ASLVG-G-R---G--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSS----TF--LDESPSISPNGIMIIYSSTQG 393 (429)
T ss_pred eEEec-C-C---C--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecC----CC--CCCCceECCCCCEEEEEEcCC
Confidence 11111 1 1 1 3467999999998887655 5669987665432111 11 224678999999999999999
Q ss_pred cEEEEec
Q 024451 254 NLKIWAF 260 (267)
Q Consensus 254 ~i~~w~~ 260 (267)
.+.+|.+
T Consensus 394 ~~~~l~~ 400 (429)
T PRK01742 394 LGKVLQL 400 (429)
T ss_pred CceEEEE
Confidence 8888764
No 187
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=3e-16 Score=120.79 Aligned_cols=193 Identities=22% Similarity=0.281 Sum_probs=138.9
Q ss_pred eeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCC-CCeEEEEecCCCeEEEEeCCCcccc-eEEeecc
Q 024451 60 THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS-NSRMFVSGSCDSTARLWDTRVASRA-VRTFHGH 137 (267)
Q Consensus 60 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~s~~~d~~i~iwd~~~~~~~-~~~~~~~ 137 (267)
..++++-..|+|++||..++.....+. ++...++.+.|... ..+.+.+++.||.||+||+|...+. .....++
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk-----~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~ 115 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFK-----GPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQ 115 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheec-----CCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCC
Confidence 457888889999999999987666664 45666667777643 4567889999999999999865443 2334444
Q ss_pred c-cceeEEEEecCCCEEEEee----CCCcEEEEeCCCCee-eEEEEeecCCCCCCcEEEEEEccCC-CEEEEEEeCCeEE
Q 024451 138 E-GDVNTVKFFPDGNRFGTGS----DDGTCRLFDIRTGHQ-LQVYYQQHGENEIPHVTSIAFSISG-RLLFAGYSNGDCY 210 (267)
Q Consensus 138 ~-~~i~~~~~~~~~~~l~~~~----~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~g~~dg~i~ 210 (267)
. .+..+++....++.+++|. .|-.+-+||.|..++ +..+.. .+...|++++|+|+. +.|++|+.||-+.
T Consensus 116 ~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~e----SH~DDVT~lrFHP~~pnlLlSGSvDGLvn 191 (376)
T KOG1188|consen 116 SGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNE----SHNDDVTQLRFHPSDPNLLLSGSVDGLVN 191 (376)
T ss_pred CCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhh----hccCcceeEEecCCCCCeEEeecccceEE
Confidence 4 3556777665677777775 366799999998876 333332 334579999999865 5889999999999
Q ss_pred EEeCCccceeeecccccCCccceEEEEEECCCC-CeEEEeECCCcEEEEecCc
Q 024451 211 VWDTLLAKVVLNLGSLQNSHEGRITCLGLSADG-SALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 211 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~sgs~dg~i~~w~~~~ 262 (267)
+||+........+.. .-.|...|.++.|..++ +-+.+-++..+..+|.+..
T Consensus 192 lfD~~~d~EeDaL~~-viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~ 243 (376)
T KOG1188|consen 192 LFDTKKDNEEDALLH-VINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELED 243 (376)
T ss_pred eeecCCCcchhhHHH-hhcccceeeeeeeecCCcceEEEEEccCceeEEEccC
Confidence 999865422111111 12467789999998665 4577888999999998753
No 188
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.73 E-value=9e-15 Score=119.59 Aligned_cols=237 Identities=14% Similarity=0.170 Sum_probs=145.6
Q ss_pred eEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEE-eeCCCeEEEEeCCC-CeeEEEeCCc
Q 024451 11 SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLIT-SSGDQTCVLWDITT-GLRTSVFGGE 88 (267)
Q Consensus 11 ~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s-~~~d~~v~iwd~~~-~~~~~~~~~~ 88 (267)
.+++...|+.|++|++... +.......+. +.+....+.++|++. +|+. +..++.|.+|++.. +... ... .
T Consensus 4 ~y~~~~~~~~I~~~~~~~~----g~l~~~~~~~-~~~~~~~l~~spd~~-~lyv~~~~~~~i~~~~~~~~g~l~-~~~-~ 75 (330)
T PRK11028 4 VYIASPESQQIHVWNLNHE----GALTLLQVVD-VPGQVQPMVISPDKR-HLYVGVRPEFRVLSYRIADDGALT-FAA-E 75 (330)
T ss_pred EEEEcCCCCCEEEEEECCC----CceeeeeEEe-cCCCCccEEECCCCC-EEEEEECCCCcEEEEEECCCCceE-Eee-e
Confidence 3566678999999999531 2222333332 234456788999765 4544 45578899999863 3211 111 1
Q ss_pred cccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCccc---ceEEeeccccceeEEEEecCCCEEEE-eeCCCcEEE
Q 024451 89 FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR---AVRTFHGHEGDVNTVKFFPDGNRFGT-GSDDGTCRL 164 (267)
Q Consensus 89 ~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d~~i~i 164 (267)
. ........+.+++.+..++++...++.|.+|++..... ....+. +....+.+.++|+++++++ ...++.|.+
T Consensus 76 ~--~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v 152 (330)
T PRK11028 76 S--PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRL 152 (330)
T ss_pred e--cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEE
Confidence 1 11223457888876555555555688999999863221 122222 2344678899999988854 456799999
Q ss_pred EeCCCCeeeEEE---EeecCCCCCCcEEEEEEccCCCEEEEEEe-CCeEEEEeCCc--c--ceeeecccccC--CccceE
Q 024451 165 FDIRTGHQLQVY---YQQHGENEIPHVTSIAFSISGRLLFAGYS-NGDCYVWDTLL--A--KVVLNLGSLQN--SHEGRI 234 (267)
Q Consensus 165 wd~~~~~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~g~~-dg~i~i~d~~~--~--~~~~~~~~~~~--~~~~~v 234 (267)
||+++...+... ...... ......+.|+|+++++++... ++.|.+||+.. + +........+. .+....
T Consensus 153 ~d~~~~g~l~~~~~~~~~~~~--g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 230 (330)
T PRK11028 153 FTLSDDGHLVAQEPAEVTTVE--GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWA 230 (330)
T ss_pred EEECCCCcccccCCCceecCC--CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccc
Confidence 999763322110 000001 123568899999999988876 89999999863 1 22222211111 122223
Q ss_pred EEEEECCCCCeEEEeEC-CCcEEEEec
Q 024451 235 TCLGLSADGSALCTGSW-DTNLKIWAF 260 (267)
Q Consensus 235 ~~~~~~p~~~~l~sgs~-dg~i~~w~~ 260 (267)
..+.++|++++|+++.. ++.|.+|++
T Consensus 231 ~~i~~~pdg~~lyv~~~~~~~I~v~~i 257 (330)
T PRK11028 231 ADIHITPDGRHLYACDRTASLISVFSV 257 (330)
T ss_pred eeEEECCCCCEEEEecCCCCeEEEEEE
Confidence 46889999999988754 789999987
No 189
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=5.4e-15 Score=126.27 Aligned_cols=242 Identities=17% Similarity=0.281 Sum_probs=180.2
Q ss_pred eeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCC--eeEEEeeCCCeEEEEeCCCCee
Q 024451 4 AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDED--THLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 4 ~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
.|++|++.++... +..|+||...... +...+.+|+.++..+.+.|... .++++++.||.|++||...+..
T Consensus 23 vfSnD~k~l~~~~-~~~V~VyS~~Tg~-------~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~L 94 (792)
T KOG1963|consen 23 VFSNDAKFLFLCT-GNFVKVYSTATGE-------CITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGEL 94 (792)
T ss_pred ccccCCcEEEEee-CCEEEEEecchHh-------hhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEE
Confidence 4889998887755 4589999986532 5668899999999999988766 5778999999999999876543
Q ss_pred EEEeCCc-------------------------------------------------------------------------
Q 024451 82 TSVFGGE------------------------------------------------------------------------- 88 (267)
Q Consensus 82 ~~~~~~~------------------------------------------------------------------------- 88 (267)
..++...
T Consensus 95 lkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~ 174 (792)
T KOG1963|consen 95 LKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEF 174 (792)
T ss_pred EEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceE
Confidence 3322100
Q ss_pred -------------------------cccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCC---cccceEEeeccccc
Q 024451 89 -------------------------FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV---ASRAVRTFHGHEGD 140 (267)
Q Consensus 89 -------------------------~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~---~~~~~~~~~~~~~~ 140 (267)
....|...+.+.+++| ++++++++..||.|.+|.--. .....+.+.-|-..
T Consensus 175 ~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~ 253 (792)
T KOG1963|consen 175 KGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSP-NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDE 253 (792)
T ss_pred EEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEecc-ccceEEEeccCCcEEEEeccccccccccceEEEecccc
Confidence 0012555567777875 578899999999999995321 12345567778899
Q ss_pred eeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCcccee
Q 024451 141 VNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVV 220 (267)
Q Consensus 141 i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~ 220 (267)
|.+++|+++|.++.+||..+-+-+|.+.+++. .+.. .-..+|..+.+|||+...+...+|..|++..+...+..
T Consensus 254 V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k--qfLP----RLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k 327 (792)
T KOG1963|consen 254 VNSLSFSSDGAYLLSGGREGVLVLWQLETGKK--QFLP----RLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIK 327 (792)
T ss_pred cceeEEecCCceEeecccceEEEEEeecCCCc--cccc----ccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhh
Confidence 99999999999999999999999999998762 2222 22347999999999999999999999999976443322
Q ss_pred eecccccC-------CccceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451 221 LNLGSLQN-------SHEGRITCLGLSADGSALCTGSWDTNLKIWAF 260 (267)
Q Consensus 221 ~~~~~~~~-------~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~ 260 (267)
..+.++.. .-.+-.+.++++|--+.++-.++.|.|.+|++
T Consensus 328 ~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl 374 (792)
T KOG1963|consen 328 STISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDL 374 (792)
T ss_pred hhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEec
Confidence 22222211 12445677899997778888899999999986
No 190
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.72 E-value=1.7e-17 Score=140.69 Aligned_cols=228 Identities=24% Similarity=0.401 Sum_probs=166.8
Q ss_pred CceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451 1 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL 80 (267)
Q Consensus 1 ~~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 80 (267)
+|.+|...|.++++|+.|..++||..+.. .+....+||.+.|+.++.+.. ...++++|.|..|++|.+.++.
T Consensus 194 yca~fDrtg~~Iitgsdd~lvKiwS~et~-------~~lAs~rGhs~ditdlavs~~-n~~iaaaS~D~vIrvWrl~~~~ 265 (1113)
T KOG0644|consen 194 YCAIFDRTGRYIITGSDDRLVKIWSMETA-------RCLASCRGHSGDITDLAVSSN-NTMIAAASNDKVIRVWRLPDGA 265 (1113)
T ss_pred eeeeeccccceEeecCccceeeeeeccch-------hhhccCCCCccccchhccchh-hhhhhhcccCceEEEEecCCCc
Confidence 57789999999999999999999996543 256778999999999998764 4578999999999999999987
Q ss_pred eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCccc--ceEEeec-cccceeEEEEecCCCEEEEee
Q 024451 81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR--AVRTFHG-HEGDVNTVKFFPDGNRFGTGS 157 (267)
Q Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~--~~~~~~~-~~~~i~~~~~~~~~~~l~~~~ 157 (267)
.+.++ .+|++.|++++|+|- .+.+.||++++||.+-... +-+.+.. ....+.++.|...+.-+++++
T Consensus 266 pvsvL-----rghtgavtaiafsP~-----~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs 335 (1113)
T KOG0644|consen 266 PVSVL-----RGHTGAVTAIAFSPR-----ASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGS 335 (1113)
T ss_pred hHHHH-----hccccceeeeccCcc-----ccCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccccccc
Confidence 76654 589999999999873 3778999999999872111 1111111 124466777777888899999
Q ss_pred CCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEE
Q 024451 158 DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCL 237 (267)
Q Consensus 158 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~ 237 (267)
.|+.-..|.+....... +....++.. +....+.++.-.+..+.+|++..+...+.. ..|...+..+
T Consensus 336 ~d~ea~n~e~~~l~~~~--------~~lif~t~s--sd~~~~~~~ar~~~~~~vwnl~~g~l~H~l----~ghsd~~yvL 401 (1113)
T KOG0644|consen 336 RDGEARNHEFEQLAWRS--------NLLIFVTRS--SDLSSIVVTARNDHRLCVWNLYTGQLLHNL----MGHSDEVYVL 401 (1113)
T ss_pred CCcccccchhhHhhhhc--------cceEEEecc--ccccccceeeeeeeEeeeeecccchhhhhh----cccccceeee
Confidence 99999988765321100 000001111 111234555556778889998877655544 5688899999
Q ss_pred EECCC-CCeEEEeECCCcEEEEec
Q 024451 238 GLSAD-GSALCTGSWDTNLKIWAF 260 (267)
Q Consensus 238 ~~~p~-~~~l~sgs~dg~i~~w~~ 260 (267)
.++|- .+...+++.||...|||+
T Consensus 402 d~Hpfn~ri~msag~dgst~iwdi 425 (1113)
T KOG0644|consen 402 DVHPFNPRIAMSAGYDGSTIIWDI 425 (1113)
T ss_pred eecCCCcHhhhhccCCCceEeeec
Confidence 99984 556678999999999997
No 191
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.72 E-value=5.2e-16 Score=125.97 Aligned_cols=198 Identities=22% Similarity=0.329 Sum_probs=131.2
Q ss_pred CCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccc----cCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeE
Q 024451 7 PTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRML----SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT 82 (267)
Q Consensus 7 ~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~----~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 82 (267)
|.|--|+-+-..|.+.+.|.... +..+.+ .-.+..|+|+.|.|-++..++.+-.+|.+.+||.+-...
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~-------~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~- 254 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINF-------EVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCG- 254 (636)
T ss_pred CCCcceEEeeccCceEEecchhh-------HHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccccc-
Confidence 45555666777778887775431 111111 112478999999998877888888999999998732100
Q ss_pred EEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcE
Q 024451 83 SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTC 162 (267)
Q Consensus 83 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i 162 (267)
.+.... ......+ .| .|..|--.....++....--++.|+..+|+|||++||+.++||.+
T Consensus 255 ----------~t~p~~--~~~k~~~-~f-------~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfL 314 (636)
T KOG2394|consen 255 ----------ATAPSY--QALKDGD-QF-------AILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFL 314 (636)
T ss_pred ----------CCCCcc--cccCCCC-ee-------EEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceE
Confidence 000000 0111111 12 122222122222333333335689999999999999999999999
Q ss_pred EEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECC
Q 024451 163 RLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA 241 (267)
Q Consensus 163 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p 241 (267)
||||..+.+.+-.... ..+...+++|||||++|++|++|--|.+|.+...+.+..- .+|.+.|..++|.|
T Consensus 315 RvF~fdt~eLlg~mkS-----YFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARG----qGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 315 RIFDFDTQELLGVMKS-----YFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARG----QGHKSWVSVVAFDP 384 (636)
T ss_pred EEeeccHHHHHHHHHh-----hccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEec----cccccceeeEeecc
Confidence 9999987554332221 2245899999999999999999999999999888877543 47999999999983
No 192
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.72 E-value=1.2e-16 Score=125.53 Aligned_cols=197 Identities=22% Similarity=0.322 Sum_probs=145.1
Q ss_pred eeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee-----EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEE
Q 024451 47 GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR-----TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARL 121 (267)
Q Consensus 47 ~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~-----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~i 121 (267)
.+|+++.|.+.....++||+.|..|+||.++.... ...+ ......|...++.+.|++ .+.++++|+.+|.+.+
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y-~s~Ls~H~~aVN~vRf~p-~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEY-LSSLSRHTRAVNVVRFSP-DGELLASGGDGGEVFL 91 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEE-eecccCCcceeEEEEEcC-CcCeeeecCCCceEEE
Confidence 46888999887666899999999999998864321 1111 123457999999999996 5678999999999999
Q ss_pred EeCCC------cc---------cceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCC
Q 024451 122 WDTRV------AS---------RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIP 186 (267)
Q Consensus 122 wd~~~------~~---------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 186 (267)
|.... .. ...+.+.+|...|..++|+|+++++++++-|..+++||+..++....+.. +..
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~d-----h~~ 166 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDD-----HEH 166 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccc-----ccc
Confidence 97540 01 12355678999999999999999999999999999999999886654322 234
Q ss_pred cEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecc-----cccC----------Ccc----ceEEEEEECCCCCeEE
Q 024451 187 HVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLG-----SLQN----------SHE----GRITCLGLSADGSALC 247 (267)
Q Consensus 187 ~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~-----~~~~----------~~~----~~v~~~~~~p~~~~l~ 247 (267)
.+..++|+|-++++++=+.|...+.++....+.+.... .... -|. .-...++|+|+|.+|+
T Consensus 167 yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llv 246 (434)
T KOG1009|consen 167 YVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLV 246 (434)
T ss_pred ccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEE
Confidence 68899999999999999999877877754433222111 0000 122 2245689999999999
Q ss_pred EeE
Q 024451 248 TGS 250 (267)
Q Consensus 248 sgs 250 (267)
+.+
T Consensus 247 tPa 249 (434)
T KOG1009|consen 247 TPA 249 (434)
T ss_pred ccc
Confidence 865
No 193
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.71 E-value=7.5e-14 Score=108.77 Aligned_cols=229 Identities=14% Similarity=0.130 Sum_probs=156.8
Q ss_pred eeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCC--CeEEEEeCCCCee
Q 024451 4 AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD--QTCVLWDITTGLR 81 (267)
Q Consensus 4 ~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d--~~v~iwd~~~~~~ 81 (267)
.|+-+...|..|+.|| -++|+..+... ..... ...-.|--..|+.+ ++|..+.+ +.+++.+......
T Consensus 12 ~~Nqd~~~lsvGs~~G-yk~~~~~~~~k------~~~~~-~~~~~IvEmLFSSS---LvaiV~~~qpr~Lkv~~~Kk~~~ 80 (391)
T KOG2110|consen 12 GFNQDSTLLSVGSKDG-YKIFSCSPFEK------CFSKD-TEGVSIVEMLFSSS---LVAIVSIKQPRKLKVVHFKKKTT 80 (391)
T ss_pred eeccceeEEEccCCCc-eeEEecCchHH------hhccc-CCCeEEEEeecccc---eeEEEecCCCceEEEEEcccCce
Confidence 4777888888888887 78888764221 11111 11233444556543 44444444 4599999876655
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEee---ccccceeEEEEecCCCEEEEee-
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH---GHEGDVNTVKFFPDGNRFGTGS- 157 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~- 157 (267)
++.+. ....|.+|..+- ++ ++..-.+ .|.|||++... .+..+. .+...+..+.+++.+.++|--+
T Consensus 81 ICe~~------fpt~IL~VrmNr--~R-LvV~Lee-~IyIydI~~Mk-lLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s 149 (391)
T KOG2110|consen 81 ICEIF------FPTSILAVRMNR--KR-LVVCLEE-SIYIYDIKDMK-LLHTIETTPPNPKGLCALSPNNANCYLAYPGS 149 (391)
T ss_pred EEEEe------cCCceEEEEEcc--ce-EEEEEcc-cEEEEecccce-eehhhhccCCCccceEeeccCCCCceEEecCC
Confidence 54432 235688888752 34 4444443 49999998543 333332 3444566666666677887533
Q ss_pred -CCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCC-eEEEEeCCccceeeecccccCCccceEE
Q 024451 158 -DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG-DCYVWDTLLAKVVLNLGSLQNSHEGRIT 235 (267)
Q Consensus 158 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~v~ 235 (267)
..|.|.+||..+.+....+.. +.+.+.+++|+++|.+||+++..| .|++|....+..+.++.+- .-...|.
T Consensus 150 ~t~GdV~l~d~~nl~~v~~I~a-----H~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG--~~~~~Iy 222 (391)
T KOG2110|consen 150 TTSGDVVLFDTINLQPVNTINA-----HKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRG--TYPVSIY 222 (391)
T ss_pred CCCceEEEEEcccceeeeEEEe-----cCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCC--ceeeEEE
Confidence 468999999988776555432 335799999999999999999988 6799999888887776542 2345799
Q ss_pred EEEECCCCCeEEEeECCCcEEEEecC
Q 024451 236 CLGLSADGSALCTGSWDTNLKIWAFG 261 (267)
Q Consensus 236 ~~~~~p~~~~l~sgs~dg~i~~w~~~ 261 (267)
+++|+|++.+|++.|.-++|.+|++.
T Consensus 223 SL~Fs~ds~~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 223 SLSFSPDSQFLAASSNTETVHIFKLE 248 (391)
T ss_pred EEEECCCCCeEEEecCCCeEEEEEec
Confidence 99999999999999999999999874
No 194
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=2.1e-15 Score=127.27 Aligned_cols=212 Identities=16% Similarity=0.215 Sum_probs=136.8
Q ss_pred ceeeCCCCCeEEEccCC---CeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEE--eC
Q 024451 2 TCAFSPTGQSVACGGLD---SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLW--DI 76 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d---~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iw--d~ 76 (267)
..+|+|||+.|+.++.+ ..|.+||+.... ......+.+|. ...+|+|++..++++.+.++.+.|| |+
T Consensus 208 ~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~-----~~~l~~~~g~~---~~~~wSPDG~~La~~~~~~g~~~Iy~~d~ 279 (429)
T PRK01742 208 SPAWSPDGSKLAYVSFENKKSQLVVHDLRSGA-----RKVVASFRGHN---GAPAFSPDGSRLAFASSKDGVLNIYVMGA 279 (429)
T ss_pred cceEcCCCCEEEEEEecCCCcEEEEEeCCCCc-----eEEEecCCCcc---CceeECCCCCEEEEEEecCCcEEEEEEEC
Confidence 46799999999988754 469999986421 11223344444 3579999876544455678876665 66
Q ss_pred CCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEe
Q 024451 77 TTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTG 156 (267)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 156 (267)
.++...... .+...+....|+|....++.+...++..+||++.........+ .+.. ....|+|+|++++..
T Consensus 280 ~~~~~~~lt------~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~ 350 (429)
T PRK01742 280 NGGTPSQLT------SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMI 350 (429)
T ss_pred CCCCeEeec------cCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEE
Confidence 555433221 2344566788987655555566678888899765433323333 3433 467899999999888
Q ss_pred eCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCC--ccceeeecccccCCccceE
Q 024451 157 SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL--LAKVVLNLGSLQNSHEGRI 234 (267)
Q Consensus 157 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~~v 234 (267)
+.++ +.+||+.+++.... .... ......|+|+|+.|+.++.+|...+|.+. .++....+ ..|.+.+
T Consensus 351 ~~~~-i~~~Dl~~g~~~~l-t~~~------~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l----~~~~g~~ 418 (429)
T PRK01742 351 NGDN-VVKQDLTSGSTEVL-SSTF------LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARL----PGSDGQV 418 (429)
T ss_pred cCCC-EEEEECCCCCeEEe-cCCC------CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEc----cCCCCCC
Confidence 7765 55599988764322 1111 12456799999999999988877777642 23333333 3567778
Q ss_pred EEEEECCC
Q 024451 235 TCLGLSAD 242 (267)
Q Consensus 235 ~~~~~~p~ 242 (267)
...+|+|-
T Consensus 419 ~~p~wsp~ 426 (429)
T PRK01742 419 KFPAWSPY 426 (429)
T ss_pred CCcccCCC
Confidence 88999984
No 195
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.69 E-value=9.3e-15 Score=109.60 Aligned_cols=114 Identities=31% Similarity=0.518 Sum_probs=87.4
Q ss_pred cccceeEEEEecCCCEEEEe--eCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEe---CCeEEE
Q 024451 137 HEGDVNTVKFFPDGNRFGTG--SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS---NGDCYV 211 (267)
Q Consensus 137 ~~~~i~~~~~~~~~~~l~~~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~---dg~i~i 211 (267)
..++|.+++|+|+++.|++. ..++.|.+||++ .+.+..+. ...+..+.|+|+|+++++++. .|.|.+
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~-------~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~ 129 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG-------TQPRNTISWSPDGRFLVLAGFGNLNGDLEF 129 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec-------CCCceEEEECCCCCEEEEEEccCCCcEEEE
Confidence 34579999999999987654 357899999997 33333221 124678999999999998763 478999
Q ss_pred EeCCccceeeecccccCCccceEEEEEECCCCCeEEEeEC------CCcEEEEecCceE
Q 024451 212 WDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW------DTNLKIWAFGGYR 264 (267)
Q Consensus 212 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~------dg~i~~w~~~~~~ 264 (267)
||....+.+... .|. .++.++|+|+|++|++++. |..++||++.|..
T Consensus 130 wd~~~~~~i~~~-----~~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~ 182 (194)
T PF08662_consen 130 WDVRKKKKISTF-----EHS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRL 182 (194)
T ss_pred EECCCCEEeecc-----ccC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeE
Confidence 999876665443 233 4689999999999998775 7889999998864
No 196
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.68 E-value=1.8e-13 Score=106.73 Aligned_cols=159 Identities=18% Similarity=0.278 Sum_probs=117.6
Q ss_pred eeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEE--ecCCCeEEEEe
Q 024451 46 KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVS--GSCDSTARLWD 123 (267)
Q Consensus 46 ~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s--~~~d~~i~iwd 123 (267)
..+|-+|+.+.+ .|+.+=++ .|.|||+.+.+.+.++. ....+...+..+.+++. +.+++. ....|.|.+||
T Consensus 87 pt~IL~VrmNr~---RLvV~Lee-~IyIydI~~MklLhTI~--t~~~n~~gl~AlS~n~~-n~ylAyp~s~t~GdV~l~d 159 (391)
T KOG2110|consen 87 PTSILAVRMNRK---RLVVCLEE-SIYIYDIKDMKLLHTIE--TTPPNPKGLCALSPNNA-NCYLAYPGSTTSGDVVLFD 159 (391)
T ss_pred CCceEEEEEccc---eEEEEEcc-cEEEEecccceeehhhh--ccCCCccceEeeccCCC-CceEEecCCCCCceEEEEE
Confidence 356888888763 35544444 49999999877666553 12234444555555543 234443 23468899999
Q ss_pred CCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCc-EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEE
Q 024451 124 TRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT-CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFA 202 (267)
Q Consensus 124 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 202 (267)
+.. -++...+.+|.+.+-+++|+++|.++|++++.|+ |||+.+.+++.+..+.... ....|.+++|+|++++|++
T Consensus 160 ~~n-l~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~---~~~~IySL~Fs~ds~~L~~ 235 (391)
T KOG2110|consen 160 TIN-LQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGT---YPVSIYSLSFSPDSQFLAA 235 (391)
T ss_pred ccc-ceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCc---eeeEEEEEEECCCCCeEEE
Confidence 864 4567788899999999999999999999999887 8999999998776654322 2346899999999999999
Q ss_pred EEeCCeEEEEeCC
Q 024451 203 GYSNGDCYVWDTL 215 (267)
Q Consensus 203 g~~dg~i~i~d~~ 215 (267)
.++.+.|++|.+.
T Consensus 236 sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 236 SSNTETVHIFKLE 248 (391)
T ss_pred ecCCCeEEEEEec
Confidence 9999999999764
No 197
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=1.6e-15 Score=123.68 Aligned_cols=208 Identities=25% Similarity=0.323 Sum_probs=139.7
Q ss_pred CceeeCCCCCeEEEccCCCeEEEeecCCCCCCC---CCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCC
Q 024451 1 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKD---GNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT 77 (267)
Q Consensus 1 ~~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~---~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~ 77 (267)
+|.+..+++.++.+||-||+|+.|++..+..+. ....+..++.||++.|+.+++++... .|++++.||++++|+..
T Consensus 348 l~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~-~Llscs~DgTvr~w~~~ 426 (577)
T KOG0642|consen 348 LCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD-RLLSCSSDGTVRLWEPT 426 (577)
T ss_pred EEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc-ceeeecCCceEEeeccC
Confidence 477889999999999999999999987432221 22245567899999999999998764 59999999999999987
Q ss_pred CCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEee-------ccccceeEEEEecCC
Q 024451 78 TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH-------GHEGDVNTVKFFPDG 150 (267)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~-------~~~~~i~~~~~~~~~ 150 (267)
.... .+|.... ..+...++++-.....+.++...-+.-.+.+..... ....+. .....+.-+.++|.+
T Consensus 427 ~~~~-~~f~~~~---e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s-~~~~~~s~~~~~~~~~~~in~vVs~~~~ 501 (577)
T KOG0642|consen 427 EESP-CTFGEPK---EHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVS-DLLIFESSASPGPRRYPQINKVVSHPTA 501 (577)
T ss_pred CcCc-cccCCcc---ccCCcceEeeccchhHhhhhhcccccccchhhhhhh-heeeccccCCCcccccCccceEEecCCC
Confidence 6544 3343221 112233444432221222222222222233322211 111111 011346778899999
Q ss_pred CEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccce
Q 024451 151 NRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV 219 (267)
Q Consensus 151 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~ 219 (267)
...+++..|+.|+++|..+++.+..... +...++++++.|+|.+|++|+.||.+++|.+.....
T Consensus 502 ~~~~~~hed~~Ir~~dn~~~~~l~s~~a-----~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~ 565 (577)
T KOG0642|consen 502 DITFTAHEDRSIRFFDNKTGKILHSMVA-----HKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTC 565 (577)
T ss_pred CeeEecccCCceecccccccccchheee-----ccceecceeecCCCceEEeecCCceeehhhccchhe
Confidence 9999999999999999998876543221 234589999999999999999999999998754433
No 198
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.67 E-value=1.1e-14 Score=123.27 Aligned_cols=233 Identities=23% Similarity=0.305 Sum_probs=157.4
Q ss_pred CCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee--EEEeCCccccCCcc
Q 024451 18 DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR--TSVFGGEFQSGHTA 95 (267)
Q Consensus 18 d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~--~~~~~~~~~~~~~~ 95 (267)
++.+.+|++..+..+. ..+ .-...|+|+.|+|....+++.|..+|.|.+||+..+.. ...+. .....|..
T Consensus 221 ~~~~~vW~~~~p~~Pe------~~~-~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls-~~~~sh~~ 292 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPE------LVL-ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLS-ALEVSHSE 292 (555)
T ss_pred CceEEEEecCCCCCce------EEE-ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccc-cccccCCc
Confidence 3478999998764221 111 23578999999998888999999999999999987654 22221 12246888
Q ss_pred ceEEEEEeCCC-CeEEEEecCCCeEEEEeCCCcccceEE-----ee------ccccceeEEEEec-CCCEEEEeeCCCcE
Q 024451 96 DVLSVSISGSN-SRMFVSGSCDSTARLWDTRVASRAVRT-----FH------GHEGDVNTVKFFP-DGNRFGTGSDDGTC 162 (267)
Q Consensus 96 ~i~~~~~~~~~-~~~~~s~~~d~~i~iwd~~~~~~~~~~-----~~------~~~~~i~~~~~~~-~~~~l~~~~~d~~i 162 (267)
.+..+.|.... +.-|++++.||.|..|+++.-..+... .. .....+++++|.+ +-+.|+.|+++|.|
T Consensus 293 ~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v 372 (555)
T KOG1587|consen 293 PVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKV 372 (555)
T ss_pred CeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEE
Confidence 99999887421 234789999999999988643321111 11 1123478899988 45679999999998
Q ss_pred EEEeCCCCeeeE-EEEee--cCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCC-ccceeeecccccCCccceEEEEE
Q 024451 163 RLFDIRTGHQLQ-VYYQQ--HGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL-LAKVVLNLGSLQNSHEGRITCLG 238 (267)
Q Consensus 163 ~iwd~~~~~~~~-~~~~~--~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~v~~~~ 238 (267)
.--+....+... ..++. ....+.++|.++.++|=+..++..+.|-.++||... ...++..+ ..+...|++++
T Consensus 373 ~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~----~~~~~~v~~va 448 (555)
T KOG1587|consen 373 YKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSL----DSSPDYVTDVA 448 (555)
T ss_pred EEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhh----hhccceeeeeE
Confidence 873322211111 11111 223455689999999877766665569999999976 33333322 34556799999
Q ss_pred ECCCC-CeEEEeECCCcEEEEecCc
Q 024451 239 LSADG-SALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 239 ~~p~~-~~l~sgs~dg~i~~w~~~~ 262 (267)
|||.- ..++++..||.+-+||+..
T Consensus 449 WSptrpavF~~~d~~G~l~iWDLl~ 473 (555)
T KOG1587|consen 449 WSPTRPAVFATVDGDGNLDIWDLLQ 473 (555)
T ss_pred EcCcCceEEEEEcCCCceehhhhhc
Confidence 99975 4678888899999999854
No 199
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=2.1e-15 Score=122.91 Aligned_cols=213 Identities=19% Similarity=0.286 Sum_probs=148.9
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecC-CCeeEEEeeCCCeEEEEeCCCCe
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPD-EDTHLITSSGDQTCVLWDITTGL 80 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~ 80 (267)
|++|+.+|.+|++|+.|-.+.|||.-.. .++..+-.||...|+|+.|.|. +++.+++|..|..|+++|+....
T Consensus 55 ~LeWn~dG~lL~SGSDD~r~ivWd~~~~------KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~ 128 (758)
T KOG1310|consen 55 CLEWNADGELLASGSDDTRLIVWDPFEY------KLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSK 128 (758)
T ss_pred ceeecCCCCEEeecCCcceEEeecchhc------ceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEeccccc
Confidence 6789999999999999999999997531 1244455799999999999984 45688999999999999997421
Q ss_pred eEEE-----eCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccce---------EEeeccccceeEEEE
Q 024451 81 RTSV-----FGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV---------RTFHGHEGDVNTVKF 146 (267)
Q Consensus 81 ~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~---------~~~~~~~~~i~~~~~ 146 (267)
...+ .....-..|...+..++.-|...+.+-+++.||+++=+|++.....- ..+...--...|+..
T Consensus 129 ~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~lti 208 (758)
T KOG1310|consen 129 EGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTI 208 (758)
T ss_pred ccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeee
Confidence 1100 00111246788888888877666889999999999999998532110 111111224568899
Q ss_pred ecC-CCEEEEeeCCCcEEEEeCCCC--------e----------eeEEEEeecCCCCC-------CcEEEEEEccCCCEE
Q 024451 147 FPD-GNRFGTGSDDGTCRLFDIRTG--------H----------QLQVYYQQHGENEI-------PHVTSIAFSISGRLL 200 (267)
Q Consensus 147 ~~~-~~~l~~~~~d~~i~iwd~~~~--------~----------~~~~~~~~~~~~~~-------~~v~~~~~s~~~~~l 200 (267)
+|. ..+|++|+.|-..++||.+.. . +..-+...+..+.. ..++-+.|+|+|.-|
T Consensus 209 sp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtEl 288 (758)
T KOG1310|consen 209 SPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTEL 288 (758)
T ss_pred cCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEE
Confidence 985 568999999999999995421 0 01111111111111 135678899999999
Q ss_pred EEEEeCCeEEEEeCCcccee
Q 024451 201 FAGYSNGDCYVWDTLLAKVV 220 (267)
Q Consensus 201 ~~g~~dg~i~i~d~~~~~~~ 220 (267)
+.......|+++|+...+.+
T Consensus 289 Lvs~~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 289 LVSWGGEHVYLFDVNEDKSP 308 (758)
T ss_pred EEeeCCeEEEEEeecCCCCc
Confidence 99988889999998765543
No 200
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=3.9e-14 Score=111.04 Aligned_cols=232 Identities=13% Similarity=0.207 Sum_probs=154.9
Q ss_pred CeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe-----eEEE
Q 024451 10 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL-----RTSV 84 (267)
Q Consensus 10 ~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-----~~~~ 84 (267)
..|...+.|..+.......+.- .....-..+....+.+|..+... + ..|++|-.+|.+.+|....+. ....
T Consensus 70 evl~~r~~~~~~~~~~~~E~~~-~s~~~~~~~~~l~~~~I~gl~~~--d-g~Litc~~sG~l~~~~~k~~d~hss~l~~l 145 (412)
T KOG3881|consen 70 EVLNARSADDDLPKFVIEEFEI-SSSLDDAKTVSLGTKSIKGLKLA--D-GTLITCVSSGNLQVRHDKSGDLHSSKLIKL 145 (412)
T ss_pred eEeeccccCcccccccccCCcc-ccccccccccccccccccchhhc--C-CEEEEEecCCcEEEEeccCCccccccceee
Confidence 4444444555555555443211 01111111233444555554432 2 368999999999999987432 2111
Q ss_pred eCCccccCCccceEEEEEeCCCCeEEEEecCC--CeEEEEeCCCcccceEEeeccc---------c--ceeEEEEecC--
Q 024451 85 FGGEFQSGHTADVLSVSISGSNSRMFVSGSCD--STARLWDTRVASRAVRTFHGHE---------G--DVNTVKFFPD-- 149 (267)
Q Consensus 85 ~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d--~~i~iwd~~~~~~~~~~~~~~~---------~--~i~~~~~~~~-- 149 (267)
. ....+..+.-++....++++||.. ..+++||+... +.+ +.+.+ - .++.+.|-+.
T Consensus 146 a-------~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~-~qi--w~aKNvpnD~L~LrVPvW~tdi~Fl~g~~ 215 (412)
T KOG3881|consen 146 A-------TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS-KQI--WSAKNVPNDRLGLRVPVWITDIRFLEGSP 215 (412)
T ss_pred e-------cCCceeeeccCCCCCceEecCchhcccceeeeecccc-eee--eeccCCCCccccceeeeeeccceecCCCC
Confidence 1 112233444444455677889988 88999998754 222 22221 1 2467889876
Q ss_pred CCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCC
Q 024451 150 GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNS 229 (267)
Q Consensus 150 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~ 229 (267)
...||+++.-+.+|+||++.+......+. .. ..+++++...|.++++++|...|.+..||.+..+.+... ...
T Consensus 216 ~~~fat~T~~hqvR~YDt~~qRRPV~~fd-~~---E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~---~kg 288 (412)
T KOG3881|consen 216 NYKFATITRYHQVRLYDTRHQRRPVAQFD-FL---ENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCG---LKG 288 (412)
T ss_pred CceEEEEecceeEEEecCcccCcceeEec-cc---cCcceeeeecCCCcEEEEecccchhheecccCceeeccc---cCC
Confidence 78999999999999999997655432222 11 235899999999999999999999999999887765431 245
Q ss_pred ccceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451 230 HEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 230 ~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~ 262 (267)
..+.|.++-.+|++++||+|+-|+.+||+|+-.
T Consensus 289 ~tGsirsih~hp~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 289 ITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred ccCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence 678899999999999999999999999999765
No 201
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=2e-15 Score=121.31 Aligned_cols=253 Identities=20% Similarity=0.374 Sum_probs=178.9
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCC------------------------------CCC-----------Ccccc
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDK------------------------------DGN-----------LPVSR 40 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~------------------------------~~~-----------~~~~~ 40 (267)
++.|+..|..|++++.|..+-+||....... +++ ..-..
T Consensus 147 tV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~ 226 (559)
T KOG1334|consen 147 TVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTK 226 (559)
T ss_pred eeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecce
Confidence 3678999999999999999999997642100 000 00123
Q ss_pred cccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCcc---ceEEEEEeCCCCeEEEEecCCC
Q 024451 41 MLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTA---DVLSVSISGSNSRMFVSGSCDS 117 (267)
Q Consensus 41 ~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~~s~~~d~ 117 (267)
.+..|.++|+.++..|.....+.+++.|+.+.=.|+.+......+... ..+.. ...+++..|.+..++++++.|.
T Consensus 227 rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr--~~~~~~~v~L~~Ia~~P~nt~~faVgG~dq 304 (559)
T KOG1334|consen 227 RLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCR--EADEKERVGLYTIAVDPRNTNEFAVGGSDQ 304 (559)
T ss_pred ecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeee--ccCCccceeeeeEecCCCCccccccCChhh
Confidence 456789999999998877777899999999999999876543333211 12333 5678888998888999999999
Q ss_pred eEEEEeCCCccc-----ceEEeecc------ccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCee------------eE
Q 024451 118 TARLWDTRVASR-----AVRTFHGH------EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ------------LQ 174 (267)
Q Consensus 118 ~i~iwd~~~~~~-----~~~~~~~~------~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~------------~~ 174 (267)
.+++||.+...+ ++.++..| ...|++++|+.++.-+.+...|-.|.++.-..+.. ..
T Consensus 305 f~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k 384 (559)
T KOG1334|consen 305 FARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVK 384 (559)
T ss_pred hhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccc
Confidence 999999763211 12222221 23489999998777777778888899885432211 11
Q ss_pred EEEeecCCCCCCcEEEEE-EccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCC
Q 024451 175 VYYQQHGENEIPHVTSIA-FSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT 253 (267)
Q Consensus 175 ~~~~~~~~~~~~~v~~~~-~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg 253 (267)
..++.|..+ ..|..+- |-|...++++|+.=|.|.||+-.+.+.+.-+. +....|+||.=+|.-..||+.+-|.
T Consensus 385 ~vYKGHrN~--~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~Me----gDr~VVNCLEpHP~~PvLAsSGid~ 458 (559)
T KOG1334|consen 385 RVYKGHRNS--RTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFME----GDRHVVNCLEPHPHLPVLASSGIDH 458 (559)
T ss_pred hhhcccccc--cccceeeeccCccceEEecCccceEEEEecchhHHHHHhh----cccceEeccCCCCCCchhhccCCcc
Confidence 112223222 2355665 57889999999988999999988877665443 2233899999999999999999999
Q ss_pred cEEEEecCc
Q 024451 254 NLKIWAFGG 262 (267)
Q Consensus 254 ~i~~w~~~~ 262 (267)
.||||...+
T Consensus 459 DVKIWTP~~ 467 (559)
T KOG1334|consen 459 DVKIWTPLT 467 (559)
T ss_pred ceeeecCCc
Confidence 999997633
No 202
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.66 E-value=6.4e-15 Score=119.87 Aligned_cols=174 Identities=21% Similarity=0.361 Sum_probs=126.6
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
+--|+|||.-|+|+|+||.|++|.... -+..++.....+|+|++|.|+....+++.+.--.|+ .+....+
T Consensus 109 ~gRW~~dGtgLlt~GEDG~iKiWSrsG--------MLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IK--pL~~n~k 178 (737)
T KOG1524|consen 109 SGRWSPDGAGLLTAGEDGVIKIWSRSG--------MLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIK--PLAANSK 178 (737)
T ss_pred hcccCCCCceeeeecCCceEEEEeccc--------hHHHHHhhcCceeEEEEECCCCCceEEecCCeEEEe--ecccccc
Confidence 345899999999999999999998643 123345566778999999998877676655433333 3332222
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT 161 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 161 (267)
... + .+|.+-|.+++|++. ..++++|+.|...++||.. ...+..-..|..+|++++|.|+ +.++.++- ++
T Consensus 179 ~i~----W-kAHDGiiL~~~W~~~-s~lI~sgGED~kfKvWD~~--G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt 248 (737)
T KOG1524|consen 179 IIR----W-RAHDGLVLSLSWSTQ-SNIIASGGEDFRFKIWDAQ--GANLFTSAAEEYAITSVAFNPE-KDYLLWSY-NT 248 (737)
T ss_pred eeE----E-eccCcEEEEeecCcc-ccceeecCCceeEEeeccc--CcccccCChhccceeeeeeccc-cceeeeee-ee
Confidence 211 2 369999999999975 4688999999999999964 3344445578999999999999 66665553 24
Q ss_pred EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEE
Q 024451 162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYV 211 (267)
Q Consensus 162 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i 211 (267)
.|+ + ....+.|..++||+||..+++|+..|.+.+
T Consensus 249 ~R~---~-------------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 249 ARF---S-------------SPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred eee---c-------------CCCccceEEEEEcCCCceeeccccCceEEE
Confidence 441 1 123346899999999999999999997654
No 203
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.66 E-value=7e-15 Score=109.76 Aligned_cols=165 Identities=23% Similarity=0.335 Sum_probs=121.8
Q ss_pred CCeeeEEEEEEecC-CC-eeEEEeeCCCeEEEEeCCCCeeEEEeCCcc-----ccCCccceEEEEEeCCCCeEEEEecCC
Q 024451 44 GHKGYVSCCQYVPD-ED-THLITSSGDQTCVLWDITTGLRTSVFGGEF-----QSGHTADVLSVSISGSNSRMFVSGSCD 116 (267)
Q Consensus 44 ~h~~~v~~~~~~~~-~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~~~~~s~~~d 116 (267)
+..+.+.|..+--. +. .+++.|-++|.+.+||+.++.....++..+ ...|+.++.++.+.+.-++ =++|+.+
T Consensus 148 ~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~r-Gisgga~ 226 (323)
T KOG0322|consen 148 SKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDR-GISGGAD 226 (323)
T ss_pred cccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcC-CcCCCcc
Confidence 34566777664322 22 345667789999999999885544443221 2358889999999864433 3678888
Q ss_pred CeEEEEeCCCccc--ceE-EeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEE
Q 024451 117 STARLWDTRVASR--AVR-TFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAF 193 (267)
Q Consensus 117 ~~i~iwd~~~~~~--~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~ 193 (267)
..+.+|++..... .++ .+.-.+..+..+...||++.+|+++.|+.||||..++.+.+..+..+. ..|.+++|
T Consensus 227 dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHs-----agvn~vAf 301 (323)
T KOG0322|consen 227 DKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHS-----AGVNAVAF 301 (323)
T ss_pred ccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhh-----cceeEEEe
Confidence 8899998764321 111 122234568899999999999999999999999999988877665432 46999999
Q ss_pred ccCCCEEEEEEeCCeEEEEeC
Q 024451 194 SISGRLLFAGYSNGDCYVWDT 214 (267)
Q Consensus 194 s~~~~~l~~g~~dg~i~i~d~ 214 (267)
+|+.+.+|+++.|+.|.+|++
T Consensus 302 spd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 302 SPDCELMAAASKDARISLWKL 322 (323)
T ss_pred CCCCchhhhccCCceEEeeec
Confidence 999999999999999999986
No 204
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.65 E-value=4.7e-14 Score=124.59 Aligned_cols=255 Identities=16% Similarity=0.162 Sum_probs=157.3
Q ss_pred eeeC-CCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCC--C
Q 024451 3 CAFS-PTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT--G 79 (267)
Q Consensus 3 ~~~~-~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~--~ 79 (267)
++.+ +.+.+++|||.||+|++|+...-....+......++....+.+.++...+.++ .+|.++.||.|++.+++. .
T Consensus 1054 ~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~-~~Av~t~DG~v~~~~id~~~~ 1132 (1431)
T KOG1240|consen 1054 LAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD-QFAVSTKDGSVRVLRIDHYNV 1132 (1431)
T ss_pred eeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC-eEEEEcCCCeEEEEEcccccc
Confidence 3444 56699999999999999998763322233334445544567778888777654 678889999999998875 2
Q ss_pred eeEEEeCCccccCC-ccceEEEE-EeCCCC-eEEEEecCCCeEEEEeCCCcccceE-EeeccccceeEEEEecCCCEEEE
Q 024451 80 LRTSVFGGEFQSGH-TADVLSVS-ISGSNS-RMFVSGSCDSTARLWDTRVASRAVR-TFHGHEGDVNTVKFFPDGNRFGT 155 (267)
Q Consensus 80 ~~~~~~~~~~~~~~-~~~i~~~~-~~~~~~-~~~~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~ 155 (267)
...........+.+ .+.+.++. +..... ..++.+..-+.|..||++......+ +.....+.|++++.+|.++.++.
T Consensus 1133 ~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~Wlvi 1212 (1431)
T KOG1240|consen 1133 SKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVI 1212 (1431)
T ss_pred ccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEE
Confidence 22222111211222 22232222 221122 3677888888999999985432211 22223467999999999999999
Q ss_pred eeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccC---CCEEEE-EE-eCCeEEEEeCCccceee--ecc----
Q 024451 156 GSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS---GRLLFA-GY-SNGDCYVWDTLLAKVVL--NLG---- 224 (267)
Q Consensus 156 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~-g~-~dg~i~i~d~~~~~~~~--~~~---- 224 (267)
|...|.+-+||++-+..+..+. .....++..++.+|- ....++ |+ ..+.|.+|++..+..-. ...
T Consensus 1213 Gts~G~l~lWDLRF~~~i~sw~----~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p 1288 (1431)
T KOG1240|consen 1213 GTSRGQLVLWDLRFRVPILSWE----HPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAP 1288 (1431)
T ss_pred ecCCceEEEEEeecCceeeccc----CcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCc
Confidence 9999999999998765443321 122245666666543 344444 44 57899999987652111 000
Q ss_pred ---cc-c-----CCccceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451 225 ---SL-Q-----NSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 225 ---~~-~-----~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~ 262 (267)
.. + +.+.-+....++..-+.++.+|+.|..||.||...
T Consensus 1289 ~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1289 ILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred chhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCC
Confidence 00 0 02222233344444466888999999999999743
No 205
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.65 E-value=3.5e-14 Score=108.71 Aligned_cols=213 Identities=18% Similarity=0.232 Sum_probs=154.8
Q ss_pred eeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCC
Q 024451 46 KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTR 125 (267)
Q Consensus 46 ~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~ 125 (267)
..+|+|-+|+++. ..++.+.....|.||.......-. .......|...++.++|.+... .+++++.|..-++|...
T Consensus 10 ~~pitchAwn~dr-t~iAv~~~~~evhiy~~~~~~~w~--~~htls~Hd~~vtgvdWap~sn-rIvtcs~drnayVw~~~ 85 (361)
T KOG1523|consen 10 LEPITCHAWNSDR-TQIAVSPNNHEVHIYSMLGADLWE--PAHTLSEHDKIVTGVDWAPKSN-RIVTCSHDRNAYVWTQP 85 (361)
T ss_pred cCceeeeeecCCC-ceEEeccCCceEEEEEecCCCCce--eceehhhhCcceeEEeecCCCC-ceeEccCCCCccccccC
Confidence 3579999999976 468888888899999876543110 1122356889999999997654 57899999999999874
Q ss_pred Ccc--cceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEE
Q 024451 126 VAS--RAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG 203 (267)
Q Consensus 126 ~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g 203 (267)
... ++.-.+..++..+.++.|+|.++.||+|+.-+.|.||-++..+.=-+. ++........|.++.|+|++-.+++|
T Consensus 86 ~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVs-KhikkPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 86 SGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVS-KHIKKPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred CCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehh-hhhCCccccceeeeeccCCcceeccc
Confidence 332 233345568889999999999999999999999999988754321110 11112233468999999999999999
Q ss_pred EeCCeEEEEeCCccce-------------eeecccccC-CccceEEEEEECCCCCeEEEeECCCcEEEEecCce
Q 024451 204 YSNGDCYVWDTLLAKV-------------VLNLGSLQN-SHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGY 263 (267)
Q Consensus 204 ~~dg~i~i~d~~~~~~-------------~~~~~~~~~-~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~ 263 (267)
+.|+..++|....... .+.....+. ...+.+..+.|+|+|+-|+=.++|..+.+=|..+-
T Consensus 165 s~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 165 STDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred ccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence 9999999997532111 000000011 34578999999999999999999999998876543
No 206
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.64 E-value=4.9e-13 Score=102.41 Aligned_cols=236 Identities=12% Similarity=0.206 Sum_probs=149.2
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEE-EeeCC------CeEEEE
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLI-TSSGD------QTCVLW 74 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~-s~~~d------~~v~iw 74 (267)
+++|+-|-..++.|..+| .+||++++-.+. ..+....-.-.+.-+.| .. ++++ .|+.+ +.|.||
T Consensus 10 svs~NQD~ScFava~~~G-friyn~~P~ke~-----~~r~~~~~G~~~veMLf-R~--N~laLVGGg~~pky~pNkviIW 80 (346)
T KOG2111|consen 10 SVSFNQDHSCFAVATDTG-FRIYNCDPFKES-----ASRQFIDGGFKIVEMLF-RS--NYLALVGGGSRPKYPPNKVIIW 80 (346)
T ss_pred EEEEccCCceEEEEecCc-eEEEecCchhhh-----hhhccccCchhhhhHhh-hh--ceEEEecCCCCCCCCCceEEEE
Confidence 467888888888887776 899998752111 00101000011111112 11 2333 33332 579999
Q ss_pred eCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeecc--ccceeEEEEecCCCE
Q 024451 75 DITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH--EGDVNTVKFFPDGNR 152 (267)
Q Consensus 75 d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~ 152 (267)
|-..+..+..+ .-..+|.++.+.. ++++ . -..+.|.||......+.++.+..- .....++.-..+..+
T Consensus 81 DD~k~~~i~el------~f~~~I~~V~l~r--~riV-v-vl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~ 150 (346)
T KOG2111|consen 81 DDLKERCIIEL------SFNSEIKAVKLRR--DRIV-V-VLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSL 150 (346)
T ss_pred ecccCcEEEEE------EeccceeeEEEcC--CeEE-E-EecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceE
Confidence 95544444333 2356788888864 3333 2 345689999886544555554322 223333332323445
Q ss_pred EEEee-CCCcEEEEeCCCCeee-EEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCC-eEEEEeCCccceeeecccccCC
Q 024451 153 FGTGS-DDGTCRLFDIRTGHQL-QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG-DCYVWDTLLAKVVLNLGSLQNS 229 (267)
Q Consensus 153 l~~~~-~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg-~i~i~d~~~~~~~~~~~~~~~~ 229 (267)
||.-| .-|.|+|-|+...+.- ..+... +...|.+++.+.+|..+|+++..| -|+|||.+.++.+.++.+ ..
T Consensus 151 LafPg~k~GqvQi~dL~~~~~~~p~~I~A----H~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RR--G~ 224 (346)
T KOG2111|consen 151 LAFPGFKTGQVQIVDLASTKPNAPSIINA----HDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRR--GV 224 (346)
T ss_pred EEcCCCccceEEEEEhhhcCcCCceEEEc----ccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeec--CC
Confidence 55433 5689999998765441 122222 234699999999999999999998 579999999988877643 33
Q ss_pred ccceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451 230 HEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 230 ~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~ 262 (267)
....|.+++|||+..+||+.|.-|++.||.+..
T Consensus 225 d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 225 DRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred chheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 456799999999999999999999999998743
No 207
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=2.3e-14 Score=112.66 Aligned_cols=212 Identities=15% Similarity=0.205 Sum_probs=149.7
Q ss_pred cccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCC------eeEEEeCCccccCCccceEEEEEeCCCCeEEEE
Q 024451 39 SRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG------LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVS 112 (267)
Q Consensus 39 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s 112 (267)
.+.+.+|.+.|.++.|+.. +++|++|+.|..+++|+++.. +++... ...|...|+++.|.. ..+.+.+
T Consensus 49 qKD~~~H~GCiNAlqFS~N-~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~----~~~H~SNIF~L~F~~-~N~~~~S 122 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHN-DRFLASGGDDMHGRVWNVDELMVRKTPKPIGVM----EHPHRSNIFSLEFDL-ENRFLYS 122 (609)
T ss_pred hhhhhhhccccceeeeccC-CeEEeecCCcceeeeechHHHHhhcCCCCceec----cCccccceEEEEEcc-CCeeEec
Confidence 3457899999999999986 689999999999999999643 222222 135778999999986 4567789
Q ss_pred ecCCCeEEEEeCCCcccceEEeeccc---cceeEEEEecCCCEEEEeeCCCcEEEEeCCCCe-eeEEEEeecCCCCCCcE
Q 024451 113 GSCDSTARLWDTRVASRAVRTFHGHE---GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH-QLQVYYQQHGENEIPHV 188 (267)
Q Consensus 113 ~~~d~~i~iwd~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~v 188 (267)
|+.+++|...|++. ...+..+ .|+ +.|+.+..+|..+.|++.+.++.|.+||.+..+ ....+.. .+.....
T Consensus 123 G~~~~~VI~HDiEt-~qsi~V~-~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~---AN~~~~F 197 (609)
T KOG4227|consen 123 GERWGTVIKHDIET-KQSIYVA-NENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLP---ANSGKNF 197 (609)
T ss_pred CCCcceeEeeeccc-ceeeeee-cccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeee---cCCCccc
Confidence 99999999999974 3334433 343 489999999999999999999999999998755 2222221 1222346
Q ss_pred EEEEEccCCC-EEEEEEeCCeEEEEeCCcccee-eec---ccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451 189 TSIAFSISGR-LLFAGYSNGDCYVWDTLLAKVV-LNL---GSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 189 ~~~~~s~~~~-~l~~g~~dg~i~i~d~~~~~~~-~~~---~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~ 262 (267)
..+-|+|... +|++.+..+.+.+||.+..... ... ..++. ......++.|+|+|+.|++--...--.+|++..
T Consensus 198 ~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~-~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S 275 (609)
T KOG4227|consen 198 YTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQ-ENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFIS 275 (609)
T ss_pred eeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcc-cchhhhheeeCCCCCeehhhhccCCCEEeeeec
Confidence 7888998765 5677778899999997644321 111 11111 122346788999999888755555556666644
No 208
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.63 E-value=2.1e-13 Score=104.50 Aligned_cols=241 Identities=15% Similarity=0.209 Sum_probs=166.1
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCC-e
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG-L 80 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~-~ 80 (267)
|-||++|++.++.+-....|.||.....+ ......++..|...|+.+.|+|.. +.|++++.|..-.+|....+ .
T Consensus 15 chAwn~drt~iAv~~~~~evhiy~~~~~~----~w~~~htls~Hd~~vtgvdWap~s-nrIvtcs~drnayVw~~~~~~~ 89 (361)
T KOG1523|consen 15 CHAWNSDRTQIAVSPNNHEVHIYSMLGAD----LWEPAHTLSEHDKIVTGVDWAPKS-NRIVTCSHDRNAYVWTQPSGGT 89 (361)
T ss_pred eeeecCCCceEEeccCCceEEEEEecCCC----CceeceehhhhCcceeEEeecCCC-CceeEccCCCCccccccCCCCe
Confidence 45799999999999999999999876432 234567889999999999999965 57999999999999988433 2
Q ss_pred eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccc---eEEeeccccceeEEEEecCCCEEEEee
Q 024451 81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA---VRTFHGHEGDVNTVKFFPDGNRFGTGS 157 (267)
Q Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~ 157 (267)
-..++. ...++....++.|+|.+ +.|++|+.-..|.||-.+....- ...-+.++..|.+++|+|++-++++|+
T Consensus 90 Wkptlv---LlRiNrAAt~V~WsP~e-nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs 165 (361)
T KOG1523|consen 90 WKPTLV---LLRINRAATCVKWSPKE-NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGS 165 (361)
T ss_pred ecccee---EEEeccceeeEeecCcC-ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccc
Confidence 222211 12467788999999754 56889999999999876643321 112235678899999999999999999
Q ss_pred CCCcEEEEeCCCCeeeEE---------------EEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccc-eee
Q 024451 158 DDGTCRLFDIRTGHQLQV---------------YYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK-VVL 221 (267)
Q Consensus 158 ~d~~i~iwd~~~~~~~~~---------------~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~-~~~ 221 (267)
.|++.|+|..-- +.+.. +..+. ....+.+..+.|+|+|..|+=.+.|+.+.+-|..... .+.
T Consensus 166 ~D~k~rVfSayI-K~Vdekpap~pWgsk~PFG~lm~E~-~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~ 243 (361)
T KOG1523|consen 166 TDGKCRVFSAYI-KGVDEKPAPTPWGSKMPFGQLMSEA-SSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQ 243 (361)
T ss_pred cCcceeEEEEee-eccccCCCCCCCccCCcHHHHHHhh-ccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhcc
Confidence 999999987421 00000 00000 0233579999999999999999999999999875543 122
Q ss_pred ecccccCCccceEEEEEECCCCCeEEEeECCCcEEEE
Q 024451 222 NLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 258 (267)
Q Consensus 222 ~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w 258 (267)
... ..+ -+..++.|-.+ +.++.+++|..-.++
T Consensus 244 ~~~---~~~-lP~ls~~~ise-~~vv~ag~~c~P~lf 275 (361)
T KOG1523|consen 244 SVA---TAQ-LPLLSVSWISE-NSVVAAGYDCGPVLF 275 (361)
T ss_pred chh---hcc-CCceeeEeecC-CceeecCCCCCceEE
Confidence 111 112 34555555432 334445555443333
No 209
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=2.9e-13 Score=115.90 Aligned_cols=249 Identities=18% Similarity=0.280 Sum_probs=154.3
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
|.+++|.++++++|..||.|.+|.--... .. .--...+.=|..+|.+++|++++ .+|+||+..+.+.+|.++++.+
T Consensus 210 ~~~~spn~~~~Aa~d~dGrI~vw~d~~~~-~~--~~t~t~lHWH~~~V~~L~fS~~G-~~LlSGG~E~VLv~Wq~~T~~k 285 (792)
T KOG1963|consen 210 CVALSPNERYLAAGDSDGRILVWRDFGSS-DD--SETCTLLHWHHDEVNSLSFSSDG-AYLLSGGREGVLVLWQLETGKK 285 (792)
T ss_pred eEEeccccceEEEeccCCcEEEEeccccc-cc--cccceEEEecccccceeEEecCC-ceEeecccceEEEEEeecCCCc
Confidence 46799999999999999999999743211 11 11223455688999999999976 5899999999999999999873
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcc--cceEEee--------ccccceeEEEEecCCC
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS--RAVRTFH--------GHEGDVNTVKFFPDGN 151 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~--~~~~~~~--------~~~~~i~~~~~~~~~~ 151 (267)
. .+ +.-...|..+.++|.+ ...+....|..|.+-...... ..+.-+. ...+-...+.++|.-+
T Consensus 286 q-fL-----PRLgs~I~~i~vS~ds-~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~ 358 (792)
T KOG1963|consen 286 Q-FL-----PRLGSPILHIVVSPDS-DLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTN 358 (792)
T ss_pred c-cc-----cccCCeeEEEEEcCCC-CeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCC
Confidence 2 22 3345678889898654 455666778888877542111 0011010 0122244566666555
Q ss_pred EEEEeeCCCcEEEEeCCCCeeeEEEE------------------------------------------------------
Q 024451 152 RFGTGSDDGTCRLFDIRTGHQLQVYY------------------------------------------------------ 177 (267)
Q Consensus 152 ~l~~~~~d~~i~iwd~~~~~~~~~~~------------------------------------------------------ 177 (267)
.++-.+..+.|.+||+-+.+.+..+.
T Consensus 359 ~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n 438 (792)
T KOG1963|consen 359 SLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYN 438 (792)
T ss_pred ceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEc
Confidence 56666666677777665432221110
Q ss_pred ---------eecCCCCCCcEEEEEE-ccCCC-EEEEEEeCCeEEEEeCCccceeee------cccccCCccceEEEEEEC
Q 024451 178 ---------QQHGENEIPHVTSIAF-SISGR-LLFAGYSNGDCYVWDTLLAKVVLN------LGSLQNSHEGRITCLGLS 240 (267)
Q Consensus 178 ---------~~~~~~~~~~v~~~~~-s~~~~-~l~~g~~dg~i~i~d~~~~~~~~~------~~~~~~~~~~~v~~~~~~ 240 (267)
......+.....+.++ ++... .+++++.||.+++|-....+...+ ...+...|..++.+++|+
T Consensus 439 ~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs 518 (792)
T KOG1963|consen 439 PNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFS 518 (792)
T ss_pred CCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhc
Confidence 0000001111222333 33333 677888999999997633221111 001112478899999999
Q ss_pred CCCCeEEEeECCCcEEEEecCc
Q 024451 241 ADGSALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 241 p~~~~l~sgs~dg~i~~w~~~~ 262 (267)
-||..|+ .|.|++|.+|++..
T Consensus 519 ~dGslla-~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 519 QDGSLLA-VSFDDTITIWDYDT 539 (792)
T ss_pred CCCcEEE-EecCCEEEEecCCC
Confidence 9997776 56799999999876
No 210
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=7.5e-14 Score=108.65 Aligned_cols=194 Identities=15% Similarity=0.217 Sum_probs=137.1
Q ss_pred eEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCc
Q 024451 48 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA 127 (267)
Q Consensus 48 ~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~ 127 (267)
.+.-++|++.- .-++.+..|-.|++||-...... .+ ....+..+.+++|-|.....++.|+. +.|.+|.....
T Consensus 100 dlr~~aWhqH~-~~fava~nddvVriy~ksst~pt-~L----ks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~t 172 (445)
T KOG2139|consen 100 DLRGVAWHQHI-IAFAVATNDDVVRIYDKSSTCPT-KL----KSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRT 172 (445)
T ss_pred ceeeEeechhh-hhhhhhccCcEEEEeccCCCCCc-ee----cchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcc
Confidence 45668888843 45778999999999998763322 22 12345679999999988777766665 46889975422
Q ss_pred cc-------------ceEEeeccccceeEEEEecCCCEEEEee-CCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEE
Q 024451 128 SR-------------AVRTFHGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAF 193 (267)
Q Consensus 128 ~~-------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~ 193 (267)
.. .+.+..+| ..|+++.|.+||..+++++ .|..|.|||.+++....... ...+.++-+.|
T Consensus 173 ln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~-----~glgg~slLkw 246 (445)
T KOG2139|consen 173 LNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIP-----KGLGGFSLLKW 246 (445)
T ss_pred cccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccc-----cCCCceeeEEE
Confidence 11 11223355 5799999999999999887 57899999999987665431 12346889999
Q ss_pred ccCCCEEEEEEeCCeEEEEeCCc-cceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451 194 SISGRLLFAGYSNGDCYVWDTLL-AKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF 260 (267)
Q Consensus 194 s~~~~~l~~g~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~ 260 (267)
||++.+|+++.-|+..++|+... ...... ....+.|...+|+|.|++|+-.. -|.-++|.+
T Consensus 247 SPdgd~lfaAt~davfrlw~e~q~wt~erw-----~lgsgrvqtacWspcGsfLLf~~-sgsp~lysl 308 (445)
T KOG2139|consen 247 SPDGDVLFAATCDAVFRLWQENQSWTKERW-----ILGSGRVQTACWSPCGSFLLFAC-SGSPRLYSL 308 (445)
T ss_pred cCCCCEEEEecccceeeeehhcccceecce-----eccCCceeeeeecCCCCEEEEEE-cCCceEEEE
Confidence 99999999999999999996433 222211 12445899999999999876443 255566653
No 211
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.62 E-value=1.3e-13 Score=108.08 Aligned_cols=219 Identities=16% Similarity=0.140 Sum_probs=156.2
Q ss_pred eEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCC--CeEEEEeCCCCeeEEEeCCc
Q 024451 11 SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD--QTCVLWDITTGLRTSVFGGE 88 (267)
Q Consensus 11 ~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d--~~v~iwd~~~~~~~~~~~~~ 88 (267)
.|+++-.+|.+.+|....+.-... ++ ..++-+ ..+..+.-.+.....+++|+.. +.++|||+++..++......
T Consensus 117 ~Litc~~sG~l~~~~~k~~d~hss--~l-~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNv 192 (412)
T KOG3881|consen 117 TLITCVSSGNLQVRHDKSGDLHSS--KL-IKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNV 192 (412)
T ss_pred EEEEEecCCcEEEEeccCCccccc--cc-eeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCC
Confidence 466677889999999875432111 11 122222 4456666667666677779999 88999999987544332110
Q ss_pred cc--cCCcc--ceEEEEEeCC-CCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEE
Q 024451 89 FQ--SGHTA--DVLSVSISGS-NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCR 163 (267)
Q Consensus 89 ~~--~~~~~--~i~~~~~~~~-~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~ 163 (267)
-. .+-.- .+..+.|.+. ..+.|+++..-+.+|+||.+.+++++..+.--+.+++++...|.++.+++|-.-+.+.
T Consensus 193 pnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~ 272 (412)
T KOG3881|consen 193 PNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLA 272 (412)
T ss_pred CCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhh
Confidence 00 01111 2345566643 2467899999999999999988888888887788999999999999999999999999
Q ss_pred EEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCC
Q 024451 164 LFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD 242 (267)
Q Consensus 164 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 242 (267)
.||++.++.....++. -.+.++++..+|+.+++++++-|+.|+|+|.++.+++.+. .-...++++-+.++
T Consensus 273 ~FD~r~~kl~g~~~kg----~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kv-----YvKs~lt~il~~~~ 342 (412)
T KOG3881|consen 273 KFDLRGGKLLGCGLKG----ITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKV-----YVKSRLTFILLRDD 342 (412)
T ss_pred eecccCceeeccccCC----ccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhh-----hhhccccEEEecCC
Confidence 9999988776553332 2346889999999999999999999999999987766543 22345566666544
No 212
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.60 E-value=3.2e-14 Score=118.77 Aligned_cols=195 Identities=16% Similarity=0.339 Sum_probs=147.4
Q ss_pred eEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCc
Q 024451 48 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA 127 (267)
Q Consensus 48 ~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~ 127 (267)
.|+.++|-|++.++++++ +..+.+||.+.+.....+ .+|.+.|.+++++. +++.|++|+.|+.|.+|..+-.
T Consensus 14 ci~d~afkPDGsqL~lAA--g~rlliyD~ndG~llqtL-----KgHKDtVycVAys~-dGkrFASG~aDK~VI~W~~klE 85 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA--GSRLLVYDTSDGTLLQPL-----KGHKDTVYCVAYAK-DGKRFASGSADKSVIIWTSKLE 85 (1081)
T ss_pred chheeEECCCCceEEEec--CCEEEEEeCCCccccccc-----ccccceEEEEEEcc-CCceeccCCCceeEEEeccccc
Confidence 788999999987766544 457899999988766655 58999999999995 5778999999999999986532
Q ss_pred ccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCC
Q 024451 128 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG 207 (267)
Q Consensus 128 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg 207 (267)
. +-.+ .|++.|.|+.|.|....+++|+-. ..-+|........ . +. ....+.+.+|..||++++.|-.+|
T Consensus 86 G--~LkY-SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~-K----~k--ss~R~~~CsWtnDGqylalG~~nG 154 (1081)
T KOG1538|consen 86 G--ILKY-SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVS-K----HK--SSSRIICCSWTNDGQYLALGMFNG 154 (1081)
T ss_pred c--eeee-ccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHH-h----hh--hheeEEEeeecCCCcEEEEeccCc
Confidence 2 1222 589999999999998899988753 4567876542211 1 11 123578889999999999999999
Q ss_pred eEEEEeCCccceeeecccccCCccceEEEEEECCCC-----CeEEEeECCCcEEEEecCce
Q 024451 208 DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADG-----SALCTGSWDTNLKIWAFGGY 263 (267)
Q Consensus 208 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-----~~l~sgs~dg~i~~w~~~~~ 263 (267)
.|.+-+....+.. .+. .+.+.+++|++++|+|+. ..++...+..++.++.+.|-
T Consensus 155 TIsiRNk~gEek~-~I~-Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~ 213 (1081)
T KOG1538|consen 155 TISIRNKNGEEKV-KIE-RPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK 213 (1081)
T ss_pred eEEeecCCCCcce-EEe-CCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce
Confidence 9998874332222 121 234567899999999973 47899999999999988764
No 213
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.60 E-value=1.3e-13 Score=121.87 Aligned_cols=218 Identities=18% Similarity=0.212 Sum_probs=144.6
Q ss_pred cccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeE-EEeCCcccc-CCccceEEEEEeCCCCeEEEEec
Q 024451 37 PVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT-SVFGGEFQS-GHTADVLSVSISGSNSRMFVSGS 114 (267)
Q Consensus 37 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~-~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~s~~ 114 (267)
.+..++..|...|..++.++....+++|||.||+||+||...-... ..+..+.+. ....++..+...+ ++..++.++
T Consensus 1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~-~~~~~Av~t 1117 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG-NGDQFAVST 1117 (1431)
T ss_pred eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc-CCCeEEEEc
Confidence 4566788999999988888766679999999999999998642111 111111111 1234555666654 345678889
Q ss_pred CCCeEEEEeCCCcc--c----ceEEeeccc-cc-eeEEEEec-CCC-EEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCC
Q 024451 115 CDSTARLWDTRVAS--R----AVRTFHGHE-GD-VNTVKFFP-DGN-RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENE 184 (267)
Q Consensus 115 ~d~~i~iwd~~~~~--~----~~~~~~~~~-~~-i~~~~~~~-~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 184 (267)
.||.|++..+.... + ..+....+. +. +..-+|.. .+. .++.+..-+.|..||+++......... ...
T Consensus 1118 ~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~---~~~ 1194 (1431)
T KOG1240|consen 1118 KDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN---QLR 1194 (1431)
T ss_pred CCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhc---Ccc
Confidence 99999999876411 1 112222222 22 33344433 234 677778889999999987654432221 222
Q ss_pred CCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCC---eEEE-eE-CCCcEEEEe
Q 024451 185 IPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS---ALCT-GS-WDTNLKIWA 259 (267)
Q Consensus 185 ~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~---~l~s-gs-~dg~i~~w~ 259 (267)
-+.|++++.+|.+++++.|++.|.+.+||++-+..+... ..++..++..++.+|-.. ..++ ++ ..+.|.+|.
T Consensus 1195 hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw---~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn 1271 (1431)
T KOG1240|consen 1195 HGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSW---EHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWN 1271 (1431)
T ss_pred ccceeEEEecCCceEEEEecCCceEEEEEeecCceeecc---cCcccCCcceEEeeccCCCCceEEEecccCCCceeeee
Confidence 346999999999999999999999999999877666544 345567888888877543 4444 44 478899998
Q ss_pred cC
Q 024451 260 FG 261 (267)
Q Consensus 260 ~~ 261 (267)
+.
T Consensus 1272 ~~ 1273 (1431)
T KOG1240|consen 1272 ME 1273 (1431)
T ss_pred cc
Confidence 73
No 214
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.60 E-value=1.2e-14 Score=116.35 Aligned_cols=236 Identities=17% Similarity=0.204 Sum_probs=156.8
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCC--------------------------------CCCcccccccCCeeeE
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKD--------------------------------GNLPVSRMLSGHKGYV 49 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~--------------------------------~~~~~~~~~~~h~~~v 49 (267)
.+.++.+|++|+-||.-|.|..+|.....-.. ........++.| ..|
T Consensus 134 ~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~~-~~v 212 (545)
T KOG1272|consen 134 HLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKRH-IRV 212 (545)
T ss_pred eeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehhhc-Cch
Confidence 45688899999999999999999876421000 000001111222 345
Q ss_pred EEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCccc
Q 024451 50 SCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR 129 (267)
Q Consensus 50 ~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~ 129 (267)
..+.|.|.. -+|++++..|-++--|+.+|..+..+. -..+.+..++-+|- +..+-+|..+|+|.+|.... ..
T Consensus 213 ~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~GklVa~~~-----t~~G~~~vm~qNP~-NaVih~GhsnGtVSlWSP~s-ke 284 (545)
T KOG1272|consen 213 ARLEFLPYH-FLLVAASEAGFLKYQDVSTGKLVASIR-----TGAGRTDVMKQNPY-NAVIHLGHSNGTVSLWSPNS-KE 284 (545)
T ss_pred hhhcccchh-heeeecccCCceEEEeechhhhhHHHH-----ccCCccchhhcCCc-cceEEEcCCCceEEecCCCC-cc
Confidence 557788854 478888999999999998887554442 12334445555554 44677899999999999865 44
Q ss_pred ceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeE
Q 024451 130 AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDC 209 (267)
Q Consensus 130 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i 209 (267)
++..+..|.++|.++++.++|.|++|.|.|+.++|||++.-.++..+... .+...+++|..| .||+ +..-.+
T Consensus 285 PLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp------~~a~~ls~Sqkg-lLA~-~~G~~v 356 (545)
T KOG1272|consen 285 PLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTP------HPASNLSLSQKG-LLAL-SYGDHV 356 (545)
T ss_pred hHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecC------CCcccccccccc-ceee-ecCCee
Confidence 66667789999999999999999999999999999999987665544332 235677777554 3444 455678
Q ss_pred EEEeCCcc-ceeeecccccCCccceEEEEEECCCCCeEEEeECCCc
Q 024451 210 YVWDTLLA-KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTN 254 (267)
Q Consensus 210 ~i~d~~~~-~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~ 254 (267)
.||.-... ........+.-...++|..+.|.|-...|-.|-..|-
T Consensus 357 ~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~ 402 (545)
T KOG1272|consen 357 QIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGI 402 (545)
T ss_pred eeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCc
Confidence 99952211 1111111111223458999999998777766655443
No 215
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=4e-13 Score=113.27 Aligned_cols=212 Identities=14% Similarity=0.103 Sum_probs=130.8
Q ss_pred ceeeCCCCCeEEEcc---CCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCC--eEEEEeC
Q 024451 2 TCAFSPTGQSVACGG---LDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ--TCVLWDI 76 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~---~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~--~v~iwd~ 76 (267)
..+|+|||+.|+..+ .+..+.+|++.... ......+.+| +....|+|++..++++.+.++ .|.+||+
T Consensus 203 ~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~-----~~~l~~~~~~---~~~~~~SPDG~~La~~~~~~g~~~I~~~d~ 274 (429)
T PRK03629 203 SPAWSPDGSKLAYVTFESGRSALVIQTLANGA-----VRQVASFPRH---NGAPAFSPDGSKLAFALSKTGSLNLYVMDL 274 (429)
T ss_pred eeEEcCCCCEEEEEEecCCCcEEEEEECCCCC-----eEEccCCCCC---cCCeEECCCCCEEEEEEcCCCCcEEEEEEC
Confidence 467999999998754 34578888875421 1122223344 345789998865555555555 5888999
Q ss_pred CCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEE--eCCCcccceEEeeccccceeEEEEecCCCEEE
Q 024451 77 TTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLW--DTRVASRAVRTFHGHEGDVNTVKFFPDGNRFG 154 (267)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iw--d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 154 (267)
+++....... +...+....|+|.+..++.+...++..++| |+.. .....+..+........|+|+|++++
T Consensus 275 ~tg~~~~lt~------~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~--g~~~~lt~~~~~~~~~~~SpDG~~Ia 346 (429)
T PRK03629 275 ASGQIRQVTD------GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNING--GAPQRITWEGSQNQDADVSSDGKFMV 346 (429)
T ss_pred CCCCEEEccC------CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCC--CCeEEeecCCCCccCEEECCCCCEEE
Confidence 8875443321 223456778887655454444445555555 5432 22333433344456789999999988
Q ss_pred EeeCC---CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCe---EEEEeCCccceeeecccccC
Q 024451 155 TGSDD---GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGD---CYVWDTLLAKVVLNLGSLQN 228 (267)
Q Consensus 155 ~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~---i~i~d~~~~~~~~~~~~~~~ 228 (267)
..+.+ ..|.+||+.+++... +... .......|+|+|+.|+..+.++. ++++++.. +....+ .
T Consensus 347 ~~~~~~g~~~I~~~dl~~g~~~~-Lt~~------~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G-~~~~~l----~ 414 (429)
T PRK03629 347 MVSSNGGQQHIAKQDLATGGVQV-LTDT------FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDG-RFKARL----P 414 (429)
T ss_pred EEEccCCCceEEEEECCCCCeEE-eCCC------CCCCCceECCCCCEEEEEEcCCCceEEEEEECCC-CCeEEC----c
Confidence 76543 358889998775432 2211 11235679999999999887753 67777632 222222 2
Q ss_pred CccceEEEEEECC
Q 024451 229 SHEGRITCLGLSA 241 (267)
Q Consensus 229 ~~~~~v~~~~~~p 241 (267)
.|.+.+...+|+|
T Consensus 415 ~~~~~~~~p~Wsp 427 (429)
T PRK03629 415 ATDGQVKFPAWSP 427 (429)
T ss_pred cCCCCcCCcccCC
Confidence 4667788888887
No 216
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.59 E-value=4e-12 Score=97.53 Aligned_cols=180 Identities=16% Similarity=0.196 Sum_probs=122.9
Q ss_pred CCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCC-CeeEEEeCCccccCCccc
Q 024451 18 DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT-GLRTSVFGGEFQSGHTAD 96 (267)
Q Consensus 18 d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~-~~~~~~~~~~~~~~~~~~ 96 (267)
-+.|-|||=.. .. +. ....-+.+|.+|.+.++ .|+.. .++.|.+|.... .++...+..... ...
T Consensus 74 pNkviIWDD~k----~~---~i-~el~f~~~I~~V~l~r~---riVvv-l~~~I~VytF~~n~k~l~~~et~~N---PkG 138 (346)
T KOG2111|consen 74 PNKVIIWDDLK----ER---CI-IELSFNSEIKAVKLRRD---RIVVV-LENKIYVYTFPDNPKLLHVIETRSN---PKG 138 (346)
T ss_pred CceEEEEeccc----Cc---EE-EEEEeccceeeEEEcCC---eEEEE-ecCeEEEEEcCCChhheeeeecccC---CCc
Confidence 46789998211 11 11 11234678999988774 34333 577899999873 344444432211 111
Q ss_pred eEEEEEeCCCCeEEEE-ecCCCeEEEEeCCCccc-ceEEeeccccceeEEEEecCCCEEEEeeCCCc-EEEEeCCCCeee
Q 024451 97 VLSVSISGSNSRMFVS-GSCDSTARLWDTRVASR-AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT-CRLFDIRTGHQL 173 (267)
Q Consensus 97 i~~~~~~~~~~~~~~s-~~~d~~i~iwd~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~-i~iwd~~~~~~~ 173 (267)
..+++-. .+..+++- |-.-|.|+|-|+..... .-..+.+|...|.|++...+|..+||+|..|+ |||||..++..+
T Consensus 139 lC~~~~~-~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l 217 (346)
T KOG2111|consen 139 LCSLCPT-SNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLL 217 (346)
T ss_pred eEeecCC-CCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEe
Confidence 2233222 22333333 33558999999864332 23667899999999999999999999999887 899999999888
Q ss_pred EEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCc
Q 024451 174 QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL 216 (267)
Q Consensus 174 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~ 216 (267)
..+... .....+.+++|||+..+|++++..|+|+||.++.
T Consensus 218 ~E~RRG---~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 218 QELRRG---VDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred eeeecC---CchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 776442 2345799999999999999999999999998754
No 217
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=2.1e-12 Score=109.01 Aligned_cols=193 Identities=20% Similarity=0.225 Sum_probs=122.7
Q ss_pred ccCCeeeEEEEEEecCCCeeEEEeeC-C--CeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCe
Q 024451 42 LSGHKGYVSCCQYVPDEDTHLITSSG-D--QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST 118 (267)
Q Consensus 42 ~~~h~~~v~~~~~~~~~~~~l~s~~~-d--~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~ 118 (267)
+..+...+.+.+|+|++. .|+..+. + ..|.+||+.++....... .........|+|...+++++.+.++.
T Consensus 191 l~~~~~~v~~p~wSPDG~-~la~~s~~~~~~~I~~~dl~~g~~~~l~~------~~g~~~~~~~SPDG~~la~~~~~~g~ 263 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGT-KLAYVSFESKKPVVYVHDLATGRRRVVAN------FKGSNSAPAWSPDGRTLAVALSRDGN 263 (427)
T ss_pred eccCCCCcccceEcCCCC-EEEEEEccCCCcEEEEEECCCCCEEEeec------CCCCccceEECCCCCEEEEEEccCCC
Confidence 445677888999999875 4554443 2 459999999876544321 12234567888766666567778887
Q ss_pred EEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeC-CCcEEEEeCC--CCeeeEEEEeecCCCCCCcEEEEEEcc
Q 024451 119 ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD-DGTCRLFDIR--TGHQLQVYYQQHGENEIPHVTSIAFSI 195 (267)
Q Consensus 119 i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~ 195 (267)
..+|.+.........+..+........|+|+|+.++..+. ++...+|.+. +++....... . .......|+|
T Consensus 264 ~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~--g----~~~~~~~~Sp 337 (427)
T PRK02889 264 SQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFT--G----SYNTSPRISP 337 (427)
T ss_pred ceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecC--C----CCcCceEECC
Confidence 7777543323334455445555667899999998876654 4666777653 3332222111 1 1234568999
Q ss_pred CCCEEEEEEeCC---eEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCC
Q 024451 196 SGRLLFAGYSNG---DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT 253 (267)
Q Consensus 196 ~~~~l~~g~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg 253 (267)
+|++|+..+.++ .|++||+..++... +. .. .......|+|||++|+..+.++
T Consensus 338 DG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt---~~--~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 338 DGKLLAYISRVGGAFKLYVQDLATGQVTA-LT---DT--TRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred CCCEEEEEEccCCcEEEEEEECCCCCeEE-cc---CC--CCccCceECCCCCEEEEEEecC
Confidence 999998776554 69999987665332 11 11 1235679999999988776544
No 218
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=4.1e-12 Score=107.63 Aligned_cols=215 Identities=15% Similarity=0.105 Sum_probs=136.0
Q ss_pred CeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEee---CCCeEEEEeCCCCeeEEEeCCccccCCcc
Q 024451 19 SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS---GDQTCVLWDITTGLRTSVFGGEFQSGHTA 95 (267)
Q Consensus 19 ~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~---~d~~v~iwd~~~~~~~~~~~~~~~~~~~~ 95 (267)
..|.++|.... ..+.+..|...+.+.+|+|++. .|+..+ .+..|.+||+.++...... .+..
T Consensus 182 ~~l~~~d~dg~--------~~~~lt~~~~~v~~p~wSpDG~-~lay~s~~~g~~~i~~~dl~~g~~~~l~------~~~g 246 (435)
T PRK05137 182 KRLAIMDQDGA--------NVRYLTDGSSLVLTPRFSPNRQ-EITYMSYANGRPRVYLLDLETGQRELVG------NFPG 246 (435)
T ss_pred eEEEEECCCCC--------CcEEEecCCCCeEeeEECCCCC-EEEEEEecCCCCEEEEEECCCCcEEEee------cCCC
Confidence 36777776432 1233556778899999999875 455544 2468999999887654332 2334
Q ss_pred ceEEEEEeCCCCeEEEEecCCCe--EEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeC-CC--cEEEEeCCCC
Q 024451 96 DVLSVSISGSNSRMFVSGSCDST--ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD-DG--TCRLFDIRTG 170 (267)
Q Consensus 96 ~i~~~~~~~~~~~~~~s~~~d~~--i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~i~iwd~~~~ 170 (267)
.+....|+|.+.+++++.+.++. |.+||+.. .....+..+........|+|+|+.++..+. ++ .|.++|+..+
T Consensus 247 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~--~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~ 324 (435)
T PRK05137 247 MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRS--GTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS 324 (435)
T ss_pred cccCcEECCCCCEEEEEEecCCCceEEEEECCC--CceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC
Confidence 45677888766666666666665 66667753 234555555555678999999998887663 33 5778887765
Q ss_pred eeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeC---CeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEE
Q 024451 171 HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN---GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALC 247 (267)
Q Consensus 171 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~ 247 (267)
+.... ... ........|+|+|+.|+....+ ..|.+||....... .+ . ....+....|+|||+.|+
T Consensus 325 ~~~~l-t~~-----~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~-~l---t--~~~~~~~p~~spDG~~i~ 392 (435)
T PRK05137 325 NPRRI-SFG-----GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGER-IL---T--SGFLVEGPTWAPNGRVIM 392 (435)
T ss_pred CeEEe-ecC-----CCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceE-ec---c--CCCCCCCCeECCCCCEEE
Confidence 43322 211 1234567899999999876543 36788886543321 11 1 112356789999999987
Q ss_pred EeECC-C-----cEEEEecCc
Q 024451 248 TGSWD-T-----NLKIWAFGG 262 (267)
Q Consensus 248 sgs~d-g-----~i~~w~~~~ 262 (267)
..+.+ + .+.++++.+
T Consensus 393 ~~~~~~~~~~~~~L~~~dl~g 413 (435)
T PRK05137 393 FFRQTPGSGGAPKLYTVDLTG 413 (435)
T ss_pred EEEccCCCCCcceEEEEECCC
Confidence 65543 2 355556544
No 219
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=1.2e-12 Score=110.74 Aligned_cols=212 Identities=16% Similarity=0.182 Sum_probs=128.4
Q ss_pred ceeeCCCCCeEEEccCC---CeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCC--eEEEEeC
Q 024451 2 TCAFSPTGQSVACGGLD---SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ--TCVLWDI 76 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d---~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~--~v~iwd~ 76 (267)
..+|+|||+.|+..+.+ ..|.+||+.... ...+..+.+...+.+|+|++..++++.+.++ .|.+||+
T Consensus 208 ~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~--------~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~ 279 (433)
T PRK04922 208 SPAWSPDGKKLAYVSFERGRSAIYVQDLATGQ--------RELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDL 279 (433)
T ss_pred cccCCCCCCEEEEEecCCCCcEEEEEECCCCC--------EEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEEC
Confidence 46799999999987743 468899985421 1112233344457899998876666666665 5999999
Q ss_pred CCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCe--EEEEeCCCcccceEEeeccccceeEEEEecCCCEEE
Q 024451 77 TTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST--ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFG 154 (267)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~--i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 154 (267)
.++...... .+........|++.+..++.+...++. |.++++... ....+..+.......+|+|+|++++
T Consensus 280 ~~g~~~~lt------~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g--~~~~lt~~g~~~~~~~~SpDG~~Ia 351 (433)
T PRK04922 280 GSRQLTRLT------NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGG--SAERLTFQGNYNARASVSPDGKKIA 351 (433)
T ss_pred CCCCeEECc------cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC--CeEEeecCCCCccCEEECCCCCEEE
Confidence 887543321 222233467788755444444445555 555565432 2222322333445789999999988
Q ss_pred EeeCCC---cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeC---CeEEEEeCCccceeeecccccC
Q 024451 155 TGSDDG---TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN---GDCYVWDTLLAKVVLNLGSLQN 228 (267)
Q Consensus 155 ~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d---g~i~i~d~~~~~~~~~~~~~~~ 228 (267)
..+.++ .|.+||+.+++.. .+.. . .......|+|+|+.++..+.+ +.|++++.... ....+ .
T Consensus 352 ~~~~~~~~~~I~v~d~~~g~~~-~Lt~--~----~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~-~~~~l----~ 419 (433)
T PRK04922 352 MVHGSGGQYRIAVMDLSTGSVR-TLTP--G----SLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR-VRQRL----V 419 (433)
T ss_pred EEECCCCceeEEEEECCCCCeE-ECCC--C----CCCCCceECCCCCEEEEEEecCCceEEEEEECCCC-ceEEc----c
Confidence 765433 6999999876543 2211 1 123456899999988777653 46888887432 22222 2
Q ss_pred CccceEEEEEECC
Q 024451 229 SHEGRITCLGLSA 241 (267)
Q Consensus 229 ~~~~~v~~~~~~p 241 (267)
.+.+.+...+|+|
T Consensus 420 ~~~g~~~~p~wsp 432 (433)
T PRK04922 420 SADGEVREPAWSP 432 (433)
T ss_pred cCCCCCCCCccCC
Confidence 2345566677776
No 220
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=5.2e-12 Score=106.57 Aligned_cols=216 Identities=15% Similarity=0.161 Sum_probs=133.9
Q ss_pred eEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEe--eCCCeEEEEeCCCCeeEEEeCCccccCCccce
Q 024451 20 VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITS--SGDQTCVLWDITTGLRTSVFGGEFQSGHTADV 97 (267)
Q Consensus 20 ~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~--~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i 97 (267)
.|.++|.+... .+.+..+...+.+.+|+|++..++++. +.+..|.+||+.++........ .++ .
T Consensus 180 ~l~~~d~dg~~--------~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~---~~~---~ 245 (429)
T PRK03629 180 ELRVSDYDGYN--------QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF---PRH---N 245 (429)
T ss_pred eEEEEcCCCCC--------CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCC---CCC---c
Confidence 67788765422 122334567788999999876443332 2345799999988754433211 122 3
Q ss_pred EEEEEeCCCCeEEEEecCCC--eEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCC-CcEEEE--eCCCCee
Q 024451 98 LSVSISGSNSRMFVSGSCDS--TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD-GTCRLF--DIRTGHQ 172 (267)
Q Consensus 98 ~~~~~~~~~~~~~~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-~~i~iw--d~~~~~~ 172 (267)
..+.|+|.+.+++.+.+.++ .|.+||+... ....+..+...+....|+|+|+.++..+.+ +...+| |+.+++.
T Consensus 246 ~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg--~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~ 323 (429)
T PRK03629 246 GAPAFSPDGSKLAFALSKTGSLNLYVMDLASG--QIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP 323 (429)
T ss_pred CCeEECCCCCEEEEEEcCCCCcEEEEEECCCC--CEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe
Confidence 35778876655555555555 5888898642 234444444567889999999988877654 445555 6655543
Q ss_pred eEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeC---CeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEe
Q 024451 173 LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN---GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTG 249 (267)
Q Consensus 173 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sg 249 (267)
... .. . ........|+|+|++++....+ ..|++||+..++... +. ..+ ......|+|||++|+..
T Consensus 324 ~~l-t~-~----~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt---~~~--~~~~p~~SpDG~~i~~~ 391 (429)
T PRK03629 324 QRI-TW-E----GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LT---DTF--LDETPSIAPNGTMVIYS 391 (429)
T ss_pred EEe-ec-C----CCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eC---CCC--CCCCceECCCCCEEEEE
Confidence 222 11 1 1124567899999998776543 368889987665322 11 111 22457899999999998
Q ss_pred ECCCc---EEEEecCce
Q 024451 250 SWDTN---LKIWAFGGY 263 (267)
Q Consensus 250 s~dg~---i~~w~~~~~ 263 (267)
+.++. +.+++++|.
T Consensus 392 s~~~~~~~l~~~~~~G~ 408 (429)
T PRK03629 392 SSQGMGSVLNLVSTDGR 408 (429)
T ss_pred EcCCCceEEEEEECCCC
Confidence 88775 566666553
No 221
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=2.1e-12 Score=100.68 Aligned_cols=234 Identities=20% Similarity=0.280 Sum_probs=146.3
Q ss_pred eeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccc-cCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe-
Q 024451 3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRML-SGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL- 80 (267)
Q Consensus 3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~- 80 (267)
++|++--..++++..|-+|++|+-.... + ..+ ..-...|+|++|-|-....|+.|+..| |.||......
T Consensus 104 ~aWhqH~~~fava~nddvVriy~ksst~------p--t~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln 174 (445)
T KOG2139|consen 104 VAWHQHIIAFAVATNDDVVRIYDKSSTC------P--TKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLN 174 (445)
T ss_pred EeechhhhhhhhhccCcEEEEeccCCCC------C--ceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccc
Confidence 4566655568889999999999854311 1 111 123456999999997777777777665 7789765321
Q ss_pred ---eEEEeC---Cc--cccCCccceEEEEEeCCCCeEEEEec-CCCeEEEEeCCCcccceEEeeccccceeEEEEecCCC
Q 024451 81 ---RTSVFG---GE--FQSGHTADVLSVSISGSNSRMFVSGS-CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN 151 (267)
Q Consensus 81 ---~~~~~~---~~--~~~~~~~~i~~~~~~~~~~~~~~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 151 (267)
.+.... .+ ...+| ..|.++.|.++.. .+++++ .|..|.|||+.++.+ +....--.+.+.-+.|+|++.
T Consensus 175 ~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt-~l~tAS~gsssi~iWdpdtg~~-~pL~~~glgg~slLkwSPdgd 251 (445)
T KOG2139|consen 175 ANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT-ILVTASFGSSSIMIWDPDTGQK-IPLIPKGLGGFSLLKWSPDGD 251 (445)
T ss_pred cccccccccccchhheeCCCC-ceeeEEEEcCCCC-EEeecccCcceEEEEcCCCCCc-ccccccCCCceeeEEEcCCCC
Confidence 101000 01 11344 6789999997654 556666 456899999875443 211112246788999999999
Q ss_pred EEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccc------------e
Q 024451 152 RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK------------V 219 (267)
Q Consensus 152 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~------------~ 219 (267)
+|.++.-|+..++|+.......+. -....+.|...+|+|+|++|+-.+.. .-++|.+.-.. .
T Consensus 252 ~lfaAt~davfrlw~e~q~wt~er-----w~lgsgrvqtacWspcGsfLLf~~sg-sp~lysl~f~~~~~~~~~~~~~k~ 325 (445)
T KOG2139|consen 252 VLFAATCDAVFRLWQENQSWTKER-----WILGSGRVQTACWSPCGSFLLFACSG-SPRLYSLTFDGEDSVFLRPQSIKR 325 (445)
T ss_pred EEEEecccceeeeehhcccceecc-----eeccCCceeeeeecCCCCEEEEEEcC-CceEEEEeecCCCccccCccccee
Confidence 999999999999996543221111 12223478999999999987665433 33455432110 0
Q ss_pred eeecccc--------cCCccceEEEEEECCCCCeEEEeECCCc
Q 024451 220 VLNLGSL--------QNSHEGRITCLGLSADGSALCTGSWDTN 254 (267)
Q Consensus 220 ~~~~~~~--------~~~~~~~v~~~~~~p~~~~l~sgs~dg~ 254 (267)
+.....+ +....++..+++|.|.|++||+--+.+.
T Consensus 326 ~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~ 368 (445)
T KOG2139|consen 326 VLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQS 368 (445)
T ss_pred eeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCc
Confidence 1000000 1112467899999999999998655443
No 222
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.56 E-value=7.3e-14 Score=107.56 Aligned_cols=221 Identities=19% Similarity=0.266 Sum_probs=139.9
Q ss_pred eeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeE
Q 024451 3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT 82 (267)
Q Consensus 3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 82 (267)
|+|+|+|+++++.+.- .+.|=|... ..+...+. --+.|.-+.|..+..-.|..+..|+.|.+|++...+--
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~t-------lq~~qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ 84 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSET-------LQLHQLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWY 84 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccch-------hhHHHHHH-HHHHhhheeeeccceeeeeeeeccceEEEEEeecceeE
Confidence 7899999999998766 455555432 11211111 12445556777765545556788899999999876544
Q ss_pred EEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCc-
Q 024451 83 SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT- 161 (267)
Q Consensus 83 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~- 161 (267)
..+. -....+.+++|+|++.+++.+...|-.|.+|.+.+.. ...++-....+..++|+|+|++.+.+++-..
T Consensus 85 ckId-----eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~--~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCk 157 (447)
T KOG4497|consen 85 CKID-----EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK--GYLLPHPKTNVKGYAFHPDGQFCAILSRRDCK 157 (447)
T ss_pred EEec-----cCCCcceeeeECCCcceEeeeecceeEEEEEEeccce--eEEecccccCceeEEECCCCceeeeeecccHH
Confidence 4332 2345678899998877888888999999999987533 2222222334678999999999988875322
Q ss_pred --EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEE
Q 024451 162 --CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGL 239 (267)
Q Consensus 162 --i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~ 239 (267)
+.|...+.-..+..+ .......+.+.|+|||+.|+ +||.-....+... ...-.+..++|
T Consensus 158 dyv~i~~c~~W~ll~~f-----~~dT~DltgieWsPdg~~la---------Vwd~~Leykv~aY-----e~~lG~k~v~w 218 (447)
T KOG4497|consen 158 DYVQISSCKAWILLKEF-----KLDTIDLTGIEWSPDGNWLA---------VWDNVLEYKVYAY-----ERGLGLKFVEW 218 (447)
T ss_pred HHHHHHhhHHHHHHHhc-----CCCcccccCceECCCCcEEE---------Eecchhhheeeee-----eeccceeEEEe
Confidence 222111111111111 11122457889999988776 4553222222111 11235788999
Q ss_pred CCCCCeEEEeECCCcEEEE
Q 024451 240 SADGSALCTGSWDTNLKIW 258 (267)
Q Consensus 240 ~p~~~~l~sgs~dg~i~~w 258 (267)
+|-+++|+.|+.|+.+|+-
T Consensus 219 sP~~qflavGsyD~~lrvl 237 (447)
T KOG4497|consen 219 SPCNQFLAVGSYDQMLRVL 237 (447)
T ss_pred ccccceEEeeccchhhhhh
Confidence 9999999999999998874
No 223
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.56 E-value=4e-11 Score=98.72 Aligned_cols=251 Identities=16% Similarity=0.133 Sum_probs=144.8
Q ss_pred eeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeE
Q 024451 3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT 82 (267)
Q Consensus 3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 82 (267)
.+|+|||+++..++.||.|.++|+.... ..+.++.... ...+++++++.-.+++...++.+.++|.++.+.+
T Consensus 42 ~~~s~Dgr~~yv~~rdg~vsviD~~~~~-------~v~~i~~G~~-~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v 113 (369)
T PF02239_consen 42 LKFSPDGRYLYVANRDGTVSVIDLATGK-------VVATIKVGGN-PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPV 113 (369)
T ss_dssp EE-TT-SSEEEEEETTSEEEEEETTSSS-------EEEEEE-SSE-EEEEEE--TTTEEEEEEEETTEEEEEETTT--EE
T ss_pred EEecCCCCEEEEEcCCCeEEEEECCccc-------EEEEEecCCC-cceEEEcCCCCEEEEEecCCCceeEeccccccce
Confidence 4689999999999999999999987532 4444433333 4668899987544445567899999999998777
Q ss_pred EEeCCccccC--CccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEe-eCC
Q 024451 83 SVFGGEFQSG--HTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTG-SDD 159 (267)
Q Consensus 83 ~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d 159 (267)
..++...... ...++..+..++....++++--..+.|-+-|.............-....+...|+|++++++.+ ..+
T Consensus 114 ~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~s 193 (369)
T PF02239_consen 114 KTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGS 193 (369)
T ss_dssp EEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGG
T ss_pred eecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeeccccc
Confidence 7664322111 3445667766665444444445557787777654322222222233456789999999987664 456
Q ss_pred CcEEEEeCCCCeeeEEEEee------------cCCC--------------------------------------CCCcEE
Q 024451 160 GTCRLFDIRTGHQLQVYYQQ------------HGEN--------------------------------------EIPHVT 189 (267)
Q Consensus 160 ~~i~iwd~~~~~~~~~~~~~------------~~~~--------------------------------------~~~~v~ 189 (267)
..|-++|.++++........ |... ...+ .
T Consensus 194 n~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-l 272 (369)
T PF02239_consen 194 NKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-L 272 (369)
T ss_dssp TEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--
T ss_pred ceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-c
Confidence 78999998877554332110 0000 0001 2
Q ss_pred EEEEccCCCEEEEE----EeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCC--cEEEEecCce
Q 024451 190 SIAFSISGRLLFAG----YSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT--NLKIWAFGGY 263 (267)
Q Consensus 190 ~~~~s~~~~~l~~g----~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg--~i~~w~~~~~ 263 (267)
-+..+|+++++.+. ...+.|.++|.++.+....+.. .-...+..+.|+++|+++....+++ .|.+||-..+
T Consensus 273 Fi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~---~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl 349 (369)
T PF02239_consen 273 FIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITP---GPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTL 349 (369)
T ss_dssp -EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHH---HHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTT
T ss_pred eeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEec---cCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCc
Confidence 24558999999887 3458999999988766654421 1123488899999999776555544 6999987665
Q ss_pred Ee
Q 024451 264 RR 265 (267)
Q Consensus 264 ~~ 265 (267)
..
T Consensus 350 ~~ 351 (369)
T PF02239_consen 350 KE 351 (369)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 224
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.55 E-value=1.5e-12 Score=97.74 Aligned_cols=154 Identities=22% Similarity=0.407 Sum_probs=102.9
Q ss_pred ceeeCCCCCeEEEccC----------CCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEE-EeeCCCe
Q 024451 2 TCAFSPTGQSVACGGL----------DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLI-TSSGDQT 70 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~----------d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~-s~~~d~~ 70 (267)
.+.|+|+|+.|+.-.. -+...+|.+..... +.........++|.+++|+|++..+++ .|..++.
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~-----~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~ 84 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNI-----PVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAK 84 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCC-----ccceeeccCCCceEEEEECcCCCEEEEEEccCCcc
Confidence 4679999987766433 23456666644321 122222234467999999998876543 3556789
Q ss_pred EEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecC---CCeEEEEeCCCcccceEEeeccccceeEEEEe
Q 024451 71 CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC---DSTARLWDTRVASRAVRTFHGHEGDVNTVKFF 147 (267)
Q Consensus 71 v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~ 147 (267)
|.+||++ ...+..+ +...++.+.|+|. +++++.++. .|.+.+||++. .+.+.... | ..+..++|+
T Consensus 85 v~lyd~~-~~~i~~~-------~~~~~n~i~wsP~-G~~l~~~g~~n~~G~l~~wd~~~-~~~i~~~~-~-~~~t~~~Ws 152 (194)
T PF08662_consen 85 VTLYDVK-GKKIFSF-------GTQPRNTISWSPD-GRFLVLAGFGNLNGDLEFWDVRK-KKKISTFE-H-SDATDVEWS 152 (194)
T ss_pred cEEEcCc-ccEeEee-------cCCCceEEEECCC-CCEEEEEEccCCCcEEEEEECCC-CEEeeccc-c-CcEEEEEEc
Confidence 9999997 3444433 2345678999975 566676653 46799999973 33344332 3 347899999
Q ss_pred cCCCEEEEeeC------CCcEEEEeCCCCeee
Q 024451 148 PDGNRFGTGSD------DGTCRLFDIRTGHQL 173 (267)
Q Consensus 148 ~~~~~l~~~~~------d~~i~iwd~~~~~~~ 173 (267)
|+|++|+++.. |..++||+.. |+.+
T Consensus 153 PdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l 183 (194)
T PF08662_consen 153 PDGRYLATATTSPRLRVDNGFKIWSFQ-GRLL 183 (194)
T ss_pred CCCCEEEEEEeccceeccccEEEEEec-CeEe
Confidence 99999998864 7889999985 5543
No 225
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.55 E-value=8.3e-13 Score=102.30 Aligned_cols=253 Identities=21% Similarity=0.362 Sum_probs=160.3
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCe------------eeEEEEEEecCC-CeeEEEeeCC
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK------------GYVSCCQYVPDE-DTHLITSSGD 68 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~------------~~v~~~~~~~~~-~~~l~s~~~d 68 (267)
++.|...|.+|+||..+|.|.++..+.... ++......++.|. -.|..++|.+++ ...++..+.|
T Consensus 30 ~vef~~~Ge~LatGdkgGRVv~f~r~~~~~--~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNd 107 (433)
T KOG1354|consen 30 AVEFDHYGERLATGDKGGRVVLFEREKLYK--GEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTND 107 (433)
T ss_pred eEEeecccceEeecCCCCeEEEeecccccc--cceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCC
Confidence 467899999999999999999997654221 1222222333332 246667887654 3456677889
Q ss_pred CeEEEEeCCCCeeEE--------------------EeC-----------CccccCCccceEEEEEeCCCCeEEEEecCCC
Q 024451 69 QTCVLWDITTGLRTS--------------------VFG-----------GEFQSGHTADVLSVSISGSNSRMFVSGSCDS 117 (267)
Q Consensus 69 ~~v~iwd~~~~~~~~--------------------~~~-----------~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~ 117 (267)
++|++|.+....... .+. ..+.++|.--|+++.++. +...+++ ..|-
T Consensus 108 ktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns-D~Et~lS-ADdL 185 (433)
T KOG1354|consen 108 KTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS-DKETFLS-ADDL 185 (433)
T ss_pred cceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC-ccceEee-ccce
Confidence 999999875321110 000 012357888899999984 4445554 5577
Q ss_pred eEEEEeCCCcccceE--Eeeccc-----cceeEEEEecC-CCEEEEeeCCCcEEEEeCCCCeeeE---EEEee-cCCC--
Q 024451 118 TARLWDTRVASRAVR--TFHGHE-----GDVNTVKFFPD-GNRFGTGSDDGTCRLFDIRTGHQLQ---VYYQQ-HGEN-- 183 (267)
Q Consensus 118 ~i~iwd~~~~~~~~~--~~~~~~-----~~i~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~---~~~~~-~~~~-- 183 (267)
.|.+|.+........ .++.++ .-|++..|+|. .+.|+-.+..|+|++-|++....-. .++.+ ....
T Consensus 186 RINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~r 265 (433)
T KOG1354|consen 186 RINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSR 265 (433)
T ss_pred eeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcch
Confidence 899998865433322 223332 24789999994 6888888899999999998432111 11111 1110
Q ss_pred -----CCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCc-cceeeecccccC---------Cccc---eEEEEEECCCCCe
Q 024451 184 -----EIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL-AKVVLNLGSLQN---------SHEG---RITCLGLSADGSA 245 (267)
Q Consensus 184 -----~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~-~~~~~~~~~~~~---------~~~~---~v~~~~~~p~~~~ 245 (267)
-...|+.+.|+++|+++++-.. -.|++||+.. .+++... ..+. .-.+ .-..++|+-++.+
T Consensus 266 sffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~-~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~ 343 (433)
T KOG1354|consen 266 SFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETY-PVHEYLRSKLCSLYENDAIFDKFECSWSGNDSY 343 (433)
T ss_pred hhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEE-eehHhHHHHHHHHhhccchhheeEEEEcCCcce
Confidence 1124788999999999997643 5799999833 2222111 0000 0111 2356889999999
Q ss_pred EEEeECCCcEEEEec
Q 024451 246 LCTGSWDTNLKIWAF 260 (267)
Q Consensus 246 l~sgs~dg~i~~w~~ 260 (267)
+++||.....++|+.
T Consensus 344 v~TGsy~n~frvf~~ 358 (433)
T KOG1354|consen 344 VMTGSYNNVFRVFNL 358 (433)
T ss_pred EecccccceEEEecC
Confidence 999999999999984
No 226
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=5.2e-12 Score=106.94 Aligned_cols=215 Identities=17% Similarity=0.134 Sum_probs=135.5
Q ss_pred CeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeC---CCeEEEEeCCCCeeEEEeCCccccCCcc
Q 024451 19 SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG---DQTCVLWDITTGLRTSVFGGEFQSGHTA 95 (267)
Q Consensus 19 ~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~---d~~v~iwd~~~~~~~~~~~~~~~~~~~~ 95 (267)
..|.+||..... .+.+..|...+.+.+|+|++. .|+..+. +..|.+||+.++....... ...
T Consensus 184 ~~l~i~D~~g~~--------~~~lt~~~~~v~~p~wSpDg~-~la~~s~~~~~~~l~~~dl~~g~~~~l~~------~~g 248 (433)
T PRK04922 184 YALQVADSDGYN--------PQTILRSAEPILSPAWSPDGK-KLAYVSFERGRSAIYVQDLATGQRELVAS------FRG 248 (433)
T ss_pred EEEEEECCCCCC--------ceEeecCCCccccccCCCCCC-EEEEEecCCCCcEEEEEECCCCCEEEecc------CCC
Confidence 468888875321 223445677888999999875 5665553 3469999998876543321 122
Q ss_pred ceEEEEEeCCCCeEEEEecCCC--eEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeC-CCc--EEEEeCCCC
Q 024451 96 DVLSVSISGSNSRMFVSGSCDS--TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD-DGT--CRLFDIRTG 170 (267)
Q Consensus 96 ~i~~~~~~~~~~~~~~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~--i~iwd~~~~ 170 (267)
......|+|.+.+++++.+.++ .|.+||+... ....+..+........|+|+|+.++..+. ++. |.++|+.++
T Consensus 249 ~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g--~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g 326 (433)
T PRK04922 249 INGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSR--QLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGG 326 (433)
T ss_pred CccCceECCCCCEEEEEEeCCCCceEEEEECCCC--CeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 2346778876666656666555 5889998643 34455555555567899999998887763 444 555666665
Q ss_pred eeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCC---eEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEE
Q 024451 171 HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG---DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALC 247 (267)
Q Consensus 171 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~ 247 (267)
+...... . . ......+|+|+|++|+..+.++ .|++||+..++.. .+. +........|+|||++++
T Consensus 327 ~~~~lt~-~-g----~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-----~~~~~~~p~~spdG~~i~ 394 (433)
T PRK04922 327 SAERLTF-Q-G----NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-----PGSLDESPSFAPNGSMVL 394 (433)
T ss_pred CeEEeec-C-C----CCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-----CCCCCCCceECCCCCEEE
Confidence 4322211 1 1 1234678999999998765433 6899998765543 221 122334578999999988
Q ss_pred EeECC-C--cEEEEecCc
Q 024451 248 TGSWD-T--NLKIWAFGG 262 (267)
Q Consensus 248 sgs~d-g--~i~~w~~~~ 262 (267)
..+.+ + .+.+++..|
T Consensus 395 ~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 395 YATREGGRGVLAAVSTDG 412 (433)
T ss_pred EEEecCCceEEEEEECCC
Confidence 76653 2 466666654
No 227
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.54 E-value=2e-14 Score=115.03 Aligned_cols=195 Identities=16% Similarity=0.275 Sum_probs=152.1
Q ss_pred EEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCccc
Q 024451 50 SCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR 129 (267)
Q Consensus 50 ~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~ 129 (267)
+.+.+..+ +++++.|+..|.|-..|..+......+. -...|..+.|... .+ +++......+.|||-. +.
T Consensus 133 Y~~~ytrn-GrhlllgGrKGHlAa~Dw~t~~L~~Ei~------v~Etv~Dv~~LHn-eq-~~AVAQK~y~yvYD~~-Gt- 201 (545)
T KOG1272|consen 133 YHLDYTRN-GRHLLLGGRKGHLAAFDWVTKKLHFEIN------VMETVRDVTFLHN-EQ-FFAVAQKKYVYVYDNN-GT- 201 (545)
T ss_pred eeeeecCC-ccEEEecCCccceeeeecccceeeeeee------hhhhhhhhhhhcc-hH-HHHhhhhceEEEecCC-Cc-
Confidence 45677665 4789999999999999999887665543 2456777777753 33 4456677789999964 33
Q ss_pred ceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeE
Q 024451 130 AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDC 209 (267)
Q Consensus 130 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i 209 (267)
.+.-++.| ..|..+.|-|.-=+|++++..|.++--|+.+|+.+..+... .+.+..++-.|-+-.+-.|..+|.|
T Consensus 202 ElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~-----~G~~~vm~qNP~NaVih~GhsnGtV 275 (545)
T KOG1272|consen 202 ELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTG-----AGRTDVMKQNPYNAVIHLGHSNGTV 275 (545)
T ss_pred EEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHcc-----CCccchhhcCCccceEEEcCCCceE
Confidence 33444433 56899999999888999999999999999999876544322 2346667778888899999999999
Q ss_pred EEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCceEe
Q 024451 210 YVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGYRR 265 (267)
Q Consensus 210 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~~~ 265 (267)
.+|.....+.+..+ -.|.++|.++++.|+|+|+|+.+.|..++|||+.++.-
T Consensus 276 SlWSP~skePLvKi----LcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~q 327 (545)
T KOG1272|consen 276 SLWSPNSKEPLVKI----LCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQ 327 (545)
T ss_pred EecCCCCcchHHHH----HhcCCCcceEEECCCCcEEeecccccceeEeeeccccc
Confidence 99998877776655 36999999999999999999999999999999877653
No 228
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=3e-12 Score=108.12 Aligned_cols=214 Identities=15% Similarity=0.203 Sum_probs=126.6
Q ss_pred ceeeCCCCCeEEEccCC---CeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeC--
Q 024451 2 TCAFSPTGQSVACGGLD---SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI-- 76 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d---~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~-- 76 (267)
+.+|+|||+.|+..+.+ ..|.+||+.... . ..+....+.+.+..|+|++..++++.+.++...||.+
T Consensus 200 ~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~-------~-~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~ 271 (427)
T PRK02889 200 SPAWSPDGTKLAYVSFESKKPVVYVHDLATGR-------R-RVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNA 271 (427)
T ss_pred cceEcCCCCEEEEEEccCCCcEEEEEECCCCC-------E-EEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEEC
Confidence 46799999999887643 458899986421 1 1122233445678999988765567788888777754
Q ss_pred CCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEe
Q 024451 77 TTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTG 156 (267)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 156 (267)
.++.... + ..+........|++.+..++.+...++...+|.+.........+..+........|+|+|++++..
T Consensus 272 ~~~~~~~-l-----t~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~ 345 (427)
T PRK02889 272 DGSGLRR-L-----TQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYI 345 (427)
T ss_pred CCCCcEE-C-----CCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEE
Confidence 4333221 1 112233445678876555544544556677775532222222222222334567899999999877
Q ss_pred eCCC---cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCC---eEEEEeCCccceeeecccccCCc
Q 024451 157 SDDG---TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG---DCYVWDTLLAKVVLNLGSLQNSH 230 (267)
Q Consensus 157 ~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg---~i~i~d~~~~~~~~~~~~~~~~~ 230 (267)
+.++ .|.+||+.+++... +.. . .......|+|+++.|+..+.++ .+++.+.. ++....+ ..+
T Consensus 346 s~~~g~~~I~v~d~~~g~~~~-lt~-~-----~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g~~~~~l----~~~ 413 (427)
T PRK02889 346 SRVGGAFKLYVQDLATGQVTA-LTD-T-----TRDESPSFAPNGRYILYATQQGGRSVLAAVSSD-GRIKQRL----SVQ 413 (427)
T ss_pred EccCCcEEEEEEECCCCCeEE-ccC-C-----CCccCceECCCCCEEEEEEecCCCEEEEEEECC-CCceEEe----ecC
Confidence 6554 69999998775432 211 1 1234668999999988877543 45555652 2222211 234
Q ss_pred cceEEEEEECC
Q 024451 231 EGRITCLGLSA 241 (267)
Q Consensus 231 ~~~v~~~~~~p 241 (267)
.+.+...+|+|
T Consensus 414 ~g~~~~p~wsp 424 (427)
T PRK02889 414 GGDVREPSWGP 424 (427)
T ss_pred CCCCCCCccCC
Confidence 45566677776
No 229
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=9.1e-13 Score=106.26 Aligned_cols=218 Identities=22% Similarity=0.365 Sum_probs=153.0
Q ss_pred ccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCC-CCeEEEEecCC
Q 024451 38 VSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS-NSRMFVSGSCD 116 (267)
Q Consensus 38 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~s~~~d 116 (267)
+...+.+|.+.|..|.|+..++ .|+++|.|..|.+||..++.....+ ..+|...+..-.|.|. +.+-+++++.|
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~f----~SGH~~NvfQaKFiP~s~d~ti~~~s~d 208 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKLSF----ESGHCNNVFQAKFIPFSGDRTIVTSSRD 208 (559)
T ss_pred hhhcccCCCCccceeeecccCc-eeeccCccceEEeehhhccCccccc----ccccccchhhhhccCCCCCcCceecccc
Confidence 4567889999999999998764 7999999999999999887665544 3688888888778764 45678899999
Q ss_pred CeEEEEeCCCcccc--eEEeeccccceeEEEEecC-CCEEEEeeCCCcEEEEeCCCCeeeEEEEe---------------
Q 024451 117 STARLWDTRVASRA--VRTFHGHEGDVNTVKFFPD-GNRFGTGSDDGTCRLFDIRTGHQLQVYYQ--------------- 178 (267)
Q Consensus 117 ~~i~iwd~~~~~~~--~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--------------- 178 (267)
|.+++=.+....+. ...+..|.+.|+-++.-|. .+.|.+++.|+.+.-+|++.......+..
T Consensus 209 gqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia 288 (559)
T KOG1334|consen 209 GQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIA 288 (559)
T ss_pred CceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEe
Confidence 99998776543332 2334568888888888775 45678888888888888775422111100
Q ss_pred ----------------------------------------ecCC-CCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCcc
Q 024451 179 ----------------------------------------QHGE-NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA 217 (267)
Q Consensus 179 ----------------------------------------~~~~-~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~ 217 (267)
.+.. ...-.|++++|+.++.-++++++|-.|++|....+
T Consensus 289 ~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~ 368 (559)
T KOG1334|consen 289 VDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMG 368 (559)
T ss_pred cCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccc
Confidence 0000 01124788999988888888899999999953222
Q ss_pred ce--e-------eecccccCCcc--ceEEEEEE-CCCCCeEEEeECCCcEEEEec
Q 024451 218 KV--V-------LNLGSLQNSHE--GRITCLGL-SADGSALCTGSWDTNLKIWAF 260 (267)
Q Consensus 218 ~~--~-------~~~~~~~~~~~--~~v~~~~~-~p~~~~l~sgs~dg~i~~w~~ 260 (267)
.. + .......++|. ..|..+-| -|..+|+++||.-|.|.||+-
T Consensus 369 ~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K 423 (559)
T KOG1334|consen 369 DGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDK 423 (559)
T ss_pred cCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEec
Confidence 11 0 00111123453 35777776 488999999999999999984
No 230
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=1e-12 Score=97.33 Aligned_cols=157 Identities=13% Similarity=0.215 Sum_probs=114.3
Q ss_pred eEEEEEeCCCCeEEEEecCCCeEEEEeCCC---------cccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeC
Q 024451 97 VLSVSISGSNSRMFVSGSCDSTARLWDTRV---------ASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDI 167 (267)
Q Consensus 97 i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~---------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~ 167 (267)
|.+-+++| ..++++.|..+|.|-++.++. +..++...++|.++|+.++|+. .++++|+ ||.|+=|..
T Consensus 13 vf~qa~sp-~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d--~~Lls~g-dG~V~gw~W 88 (325)
T KOG0649|consen 13 VFAQAISP-SKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD--DFLLSGG-DGLVYGWEW 88 (325)
T ss_pred HHHHhhCC-cceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh--hheeecc-CceEEEeee
Confidence 33344565 467899999999999998752 1234455689999999999983 4677766 599998876
Q ss_pred CCCeee---EEE-----EeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEE
Q 024451 168 RTGHQL---QVY-----YQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGL 239 (267)
Q Consensus 168 ~~~~~~---~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~ 239 (267)
+...+. +.+ ..+....+.+.|.++...|..+.++.+..|+.++-||++.++....+ ++|.+.|.++.-
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~----rGHtDYvH~vv~ 164 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREY----RGHTDYVHSVVG 164 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEE----cCCcceeeeeee
Confidence 542210 000 11112335567899999988777766669999999999998876655 689999999988
Q ss_pred CCCCCeEEEeECCCcEEEEecC
Q 024451 240 SADGSALCTGSWDTNLKIWAFG 261 (267)
Q Consensus 240 ~p~~~~l~sgs~dg~i~~w~~~ 261 (267)
-.....+.+|+.||++|+||.-
T Consensus 165 R~~~~qilsG~EDGtvRvWd~k 186 (325)
T KOG0649|consen 165 RNANGQILSGAEDGTVRVWDTK 186 (325)
T ss_pred cccCcceeecCCCccEEEEecc
Confidence 4445567889999999999863
No 231
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.50 E-value=7.3e-13 Score=108.01 Aligned_cols=178 Identities=18% Similarity=0.266 Sum_probs=115.1
Q ss_pred EEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccce
Q 024451 62 LITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDV 141 (267)
Q Consensus 62 l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i 141 (267)
++.|=.-|.|.+.|.....-...+.... .-.+..++++.|.+.+..+|+.+-.+|.+.++|..... ...-
T Consensus 188 llIGf~tGqvq~idp~~~~~sklfne~r-~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~---------~~t~ 257 (636)
T KOG2394|consen 188 LLIGFTTGQVQLIDPINFEVSKLFNEER-LINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVC---------GATA 257 (636)
T ss_pred eEEeeccCceEEecchhhHHHHhhhhcc-cccccceEEEEEEeCCCceEEEEEecCceEEeeccccc---------cCCC
Confidence 4556666777777765422111121111 12346799999999888899999999999999863110 0111
Q ss_pred eEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceee
Q 024451 142 NTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVL 221 (267)
Q Consensus 142 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~ 221 (267)
.+....+++..|+....-.. .+...+..+... ...|...+|+|||++||+.+.||.++|||..+.+.+-
T Consensus 258 p~~~~~k~~~~f~i~t~ksk------~~rNPv~~w~~~-----~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg 326 (636)
T KOG2394|consen 258 PSYQALKDGDQFAILTSKSK------KTRNPVARWHIG-----EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLG 326 (636)
T ss_pred CcccccCCCCeeEEeeeecc------ccCCccceeEec-----cccccceeEcCCCceEEEEecCceEEEeeccHHHHHH
Confidence 12223345555543221100 010112121111 1257899999999999999999999999987776554
Q ss_pred ecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCceE
Q 024451 222 NLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGYR 264 (267)
Q Consensus 222 ~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~~ 264 (267)
.+ +...+.+.|++|||||+|+++|++|..|.||.|...+
T Consensus 327 ~m----kSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erR 365 (636)
T KOG2394|consen 327 VM----KSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERR 365 (636)
T ss_pred HH----HhhccceEEEEEcCCccEEEecCCcceEEEEEeccce
Confidence 33 3455679999999999999999999999999976544
No 232
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.50 E-value=3.1e-14 Score=121.35 Aligned_cols=164 Identities=27% Similarity=0.467 Sum_probs=126.6
Q ss_pred ccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCC
Q 024451 38 VSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS 117 (267)
Q Consensus 38 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~ 117 (267)
..+.+.||.+.|+|+.|...+ .++++|+.|..++||..+++.+.... .||+..|..++++. +.-++++++.|.
T Consensus 182 ~ikrLlgH~naVyca~fDrtg-~~Iitgsdd~lvKiwS~et~~~lAs~-----rGhs~ditdlavs~-~n~~iaaaS~D~ 254 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFDRTG-RYIITGSDDRLVKIWSMETARCLASC-----RGHSGDITDLAVSS-NNTMIAAASNDK 254 (1113)
T ss_pred HHHHHHhhhhheeeeeecccc-ceEeecCccceeeeeeccchhhhccC-----CCCccccchhccch-hhhhhhhcccCc
Confidence 456678999999999998865 68999999999999999887665443 58999999998874 455788999999
Q ss_pred eEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCC
Q 024451 118 TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG 197 (267)
Q Consensus 118 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 197 (267)
.|++|-+.. ..++..+.+|++.|++++|+|-. +.+.||++++||-+-. ............+..-+.++-|-.++
T Consensus 255 vIrvWrl~~-~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~-~~~y~prp~~~~~~~~~~s~~~~~~~ 328 (1113)
T KOG0644|consen 255 VIRVWRLPD-GAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLE-PRIYVPRPLKFTEKDLVDSILFENNG 328 (1113)
T ss_pred eEEEEecCC-CchHHHHhccccceeeeccCccc----cCCCCCceEecccccc-ccccCCCCCCcccccceeeeeccccc
Confidence 999999874 45788899999999999999954 6789999999998711 11100011111222345667777788
Q ss_pred CEEEEEEeCCeEEEEeC
Q 024451 198 RLLFAGYSNGDCYVWDT 214 (267)
Q Consensus 198 ~~l~~g~~dg~i~i~d~ 214 (267)
.-+++|+.|+.-..|..
T Consensus 329 ~~f~Tgs~d~ea~n~e~ 345 (1113)
T KOG0644|consen 329 DRFLTGSRDGEARNHEF 345 (1113)
T ss_pred cccccccCCcccccchh
Confidence 88999999988877764
No 233
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.49 E-value=2.9e-12 Score=111.73 Aligned_cols=186 Identities=18% Similarity=0.257 Sum_probs=138.3
Q ss_pred eeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceE----EEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEee
Q 024451 60 THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVL----SVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH 135 (267)
Q Consensus 60 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~----~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~ 135 (267)
..++.+..++.+-+||...+...... .+..... .+.....+.-++++|+.-+.|.+|+.....++. .+.
T Consensus 100 k~i~l~~~~ns~~i~d~~~~~~~~~i------~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~-~l~ 172 (967)
T KOG0974|consen 100 KKIALVTSRNSLLIRDSKNSSVLSKI------QSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPI-RLK 172 (967)
T ss_pred ceEEEEEcCceEEEEecccCceehhc------CCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcc-eec
Confidence 46788888999999998755322211 1222221 122233445567888889999999987544444 577
Q ss_pred ccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCC
Q 024451 136 GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL 215 (267)
Q Consensus 136 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~ 215 (267)
+|.+.|..+.++.+|.++++.|+|+++|+|++++.+... ...-++...+..++|.|+ .+++++.|-..++|+..
T Consensus 173 GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~----~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~ 246 (967)
T KOG0974|consen 173 GHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG----CTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN 246 (967)
T ss_pred ccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC----cccccccceeEEEEeccc--eeEEeccceEEEEEecc
Confidence 999999999999999999999999999999999877654 123345567999999998 99999999999999643
Q ss_pred ccceeeecccccCCc-cceEEEEEECCCCCeEEEeECCCcEEEEecCce
Q 024451 216 LAKVVLNLGSLQNSH-EGRITCLGLSADGSALCTGSWDTNLKIWAFGGY 263 (267)
Q Consensus 216 ~~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~ 263 (267)
- +.+..+ ..| .+.|..++..++....++++.|+.+++|++.++
T Consensus 247 ~-~~l~~y----~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 247 G-TQLEVY----DEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred c-ceehhh----hhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 2 222211 234 356899999999999999999999999997665
No 234
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=1.1e-11 Score=105.01 Aligned_cols=211 Identities=15% Similarity=0.150 Sum_probs=129.6
Q ss_pred ceeeCCCCCeEEEccC---CCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCe--EEEEeC
Q 024451 2 TCAFSPTGQSVACGGL---DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT--CVLWDI 76 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~---d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~--v~iwd~ 76 (267)
..+|+|||+.|+..+. +..|.+||+.... .+.+..+.+.+.+.+|+|++..++++.+.++. |.+||+
T Consensus 206 ~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~--------~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~ 277 (435)
T PRK05137 206 TPRFSPNRQEITYMSYANGRPRVYLLDLETGQ--------RELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDL 277 (435)
T ss_pred eeEECCCCCEEEEEEecCCCCEEEEEECCCCc--------EEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEEC
Confidence 4679999999988764 4689999986421 12234455667788999988766667777765 667788
Q ss_pred CCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCC--eEEEEeCCCcccceEEeeccccceeEEEEecCCCEEE
Q 024451 77 TTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS--TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFG 154 (267)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 154 (267)
.++...... .+........|+|....++.+...++ .|.++|+.. . ..+.+..+...+....|+|+|+.++
T Consensus 278 ~~~~~~~Lt------~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g-~-~~~~lt~~~~~~~~~~~SpdG~~ia 349 (435)
T PRK05137 278 RSGTTTRLT------DSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADG-S-NPRRISFGGGRYSTPVWSPRGDLIA 349 (435)
T ss_pred CCCceEEcc------CCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCC-C-CeEEeecCCCcccCeEECCCCCEEE
Confidence 776543322 12333455778875544444443444 577777653 2 2333433345566789999999998
Q ss_pred EeeCC---CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeC------CeEEEEeCCccceeeeccc
Q 024451 155 TGSDD---GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN------GDCYVWDTLLAKVVLNLGS 225 (267)
Q Consensus 155 ~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d------g~i~i~d~~~~~~~~~~~~ 225 (267)
....+ ..|.+||+..+.. ..+.. . ..+....|+|+|+.|+....+ ..|+++|+..... ..+.
T Consensus 350 ~~~~~~~~~~i~~~d~~~~~~-~~lt~--~----~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~- 420 (435)
T PRK05137 350 FTKQGGGQFSIGVMKPDGSGE-RILTS--G----FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVP- 420 (435)
T ss_pred EEEcCCCceEEEEEECCCCce-EeccC--C----CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEcc-
Confidence 76543 3688888765432 22211 1 124667899999988765542 2578888754332 1211
Q ss_pred ccCCccceEEEEEECC
Q 024451 226 LQNSHEGRITCLGLSA 241 (267)
Q Consensus 226 ~~~~~~~~v~~~~~~p 241 (267)
..+.+...+|+|
T Consensus 421 ----~~~~~~~p~Wsp 432 (435)
T PRK05137 421 ----TPGDASDPAWSP 432 (435)
T ss_pred ----CCCCccCcccCC
Confidence 122355567766
No 235
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.48 E-value=6.5e-11 Score=100.03 Aligned_cols=201 Identities=18% Similarity=0.144 Sum_probs=126.1
Q ss_pred cccCCeeeEEEEEEecCCCeeEEEeeCC---CeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCC
Q 024451 41 MLSGHKGYVSCCQYVPDEDTHLITSSGD---QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS 117 (267)
Q Consensus 41 ~~~~h~~~v~~~~~~~~~~~~l~s~~~d---~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~ 117 (267)
.+..+...+.+..|+|++. +|+..+.+ ..|++||+.++...... .+.....+..|++.+..++++.+.++
T Consensus 184 ~l~~~~~~~~~p~~Spdg~-~la~~~~~~~~~~i~v~d~~~g~~~~~~------~~~~~~~~~~~spDg~~l~~~~~~~~ 256 (417)
T TIGR02800 184 TITRSREPILSPAWSPDGQ-KLAYVSFESGKPEIYVQDLATGQREKVA------SFPGMNGAPAFSPDGSKLAVSLSKDG 256 (417)
T ss_pred EeecCCCceecccCCCCCC-EEEEEEcCCCCcEEEEEECCCCCEEEee------cCCCCccceEECCCCCEEEEEECCCC
Confidence 3445666788899999875 55554433 47999999887543322 12334456778876555655655554
Q ss_pred --eEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeC-CC--cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEE
Q 024451 118 --TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD-DG--TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIA 192 (267)
Q Consensus 118 --~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 192 (267)
.|.+|++... ....+..+........|+|+++.++..+. ++ .|.++|+.+++.... .. . ........
T Consensus 257 ~~~i~~~d~~~~--~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l-~~-~----~~~~~~~~ 328 (417)
T TIGR02800 257 NPDIYVMDLDGK--QLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRL-TF-R----GGYNASPS 328 (417)
T ss_pred CccEEEEECCCC--CEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe-ec-C----CCCccCeE
Confidence 5888887632 33444444444557789999998876654 33 577778776543222 11 1 12356778
Q ss_pred EccCCCEEEEEEeCC---eEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCC---cEEEEecCc
Q 024451 193 FSISGRLLFAGYSNG---DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT---NLKIWAFGG 262 (267)
Q Consensus 193 ~s~~~~~l~~g~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg---~i~~w~~~~ 262 (267)
|+|++++++.+..++ .|++||+...... .+. .. .......|+|+|++|+..+.++ .+.+.+..+
T Consensus 329 ~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~----~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g 398 (417)
T TIGR02800 329 WSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLT----DT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTDG 398 (417)
T ss_pred ECCCCCEEEEEEccCCceEEEEEeCCCCCeE-Ecc----CC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECCC
Confidence 999999999887765 7889997664322 111 11 1234568999999988777754 344545444
No 236
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.45 E-value=8.8e-10 Score=90.58 Aligned_cols=253 Identities=16% Similarity=0.182 Sum_probs=148.4
Q ss_pred eeeCCCCCeEEEccC----CCeEEEeecCCCCCCCCCCccccccc-CCeeeEEEEEEecCCCeeEEEe-eCCCeEEEEeC
Q 024451 3 CAFSPTGQSVACGGL----DSVCSIFNLNSPTDKDGNLPVSRMLS-GHKGYVSCCQYVPDEDTHLITS-SGDQTCVLWDI 76 (267)
Q Consensus 3 ~~~~~~g~~l~~~~~----d~~v~~w~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~-~~d~~v~iwd~ 76 (267)
++++|++++|.++.+ ++.|..|++.... +.+....... .-..++ .+.+.|++. +|+++ -.+++|.++++
T Consensus 42 l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~---g~L~~~~~~~~~g~~p~-~i~~~~~g~-~l~vany~~g~v~v~~l 116 (345)
T PF10282_consen 42 LAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDT---GTLTLLNSVPSGGSSPC-HIAVDPDGR-FLYVANYGGGSVSVFPL 116 (345)
T ss_dssp EEE-TTSSEEEEEETTSSTTTEEEEEEEETTT---TEEEEEEEEEESSSCEE-EEEECTTSS-EEEEEETTTTEEEEEEE
T ss_pred EEEEeCCCEEEEEEccccCCCCEEEEEECCCc---ceeEEeeeeccCCCCcE-EEEEecCCC-EEEEEEccCCeEEEEEc
Confidence 578999999888876 5799999886531 2222222222 222333 477888765 55555 46899999999
Q ss_pred CCC-eeEEE---eCC--c---cccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccce---EEee-ccccceeE
Q 024451 77 TTG-LRTSV---FGG--E---FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV---RTFH-GHEGDVNT 143 (267)
Q Consensus 77 ~~~-~~~~~---~~~--~---~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~---~~~~-~~~~~i~~ 143 (267)
... ..... +.. . ..........++.++|....++++.-....|.+|++......+ ..+. .....-..
T Consensus 117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh 196 (345)
T PF10282_consen 117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRH 196 (345)
T ss_dssp CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEE
T ss_pred cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcE
Confidence 863 22111 100 0 0011234567888987666566555555589999886443212 1222 23345678
Q ss_pred EEEecCCCEEEEee-CCCcEEEEeCC--CCeeeEEEEeec---CCCCCCcEEEEEEccCCCEEEEEEe-CCeEEEEeCCc
Q 024451 144 VKFFPDGNRFGTGS-DDGTCRLFDIR--TGHQLQVYYQQH---GENEIPHVTSIAFSISGRLLFAGYS-NGDCYVWDTLL 216 (267)
Q Consensus 144 ~~~~~~~~~l~~~~-~d~~i~iwd~~--~~~~~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~g~~-dg~i~i~d~~~ 216 (267)
+.|+|+++++.... .+++|.++++. ++.......... ..........+.++|+|++|.++.. ...|.+|++..
T Consensus 197 ~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~ 276 (345)
T PF10282_consen 197 LAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDP 276 (345)
T ss_dssp EEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECT
T ss_pred EEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEec
Confidence 99999999886655 57889999988 332211111111 1111125789999999999988764 57899999732
Q ss_pred c-ceeeecccccCCccceEEEEEECCCCCeEEEeE-CCCcEEEEecC
Q 024451 217 A-KVVLNLGSLQNSHEGRITCLGLSADGSALCTGS-WDTNLKIWAFG 261 (267)
Q Consensus 217 ~-~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs-~dg~i~~w~~~ 261 (267)
. ..+........ ....-..++++|+|++|+++. .++.|.+|+++
T Consensus 277 ~~g~l~~~~~~~~-~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 277 ATGTLTLVQTVPT-GGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp TTTTEEEEEEEEE-SSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred CCCceEEEEEEeC-CCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 1 12222222211 222357899999999998776 46789999763
No 237
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.44 E-value=1.1e-12 Score=119.82 Aligned_cols=193 Identities=18% Similarity=0.284 Sum_probs=145.4
Q ss_pred CCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEe
Q 024451 44 GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWD 123 (267)
Q Consensus 44 ~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd 123 (267)
-|-..|.++.-+|.. .+.+||+.||.+++|....+..+..+.. .+ ..++....++.. +..+..+..||.+.+|+
T Consensus 2206 ~~v~~v~r~~sHp~~-~~Yltgs~dgsv~~~~w~~~~~v~~~rt---~g-~s~vtr~~f~~q-Gnk~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSD-PYYLTGSQDGSVRMFEWGHGQQVVCFRT---AG-NSRVTRSRFNHQ-GNKFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred cccCceeeecCCCCC-ceEEecCCCceEEEEeccCCCeEEEeec---cC-cchhhhhhhccc-CCceeeeccCCceeecc
Confidence 344556777777864 5788999999999999988877766542 12 266777777754 44567888999999999
Q ss_pred CCCcccceEEeeccccceeEEEEecCCCEEEEee---CCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEE
Q 024451 124 TRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS---DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLL 200 (267)
Q Consensus 124 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 200 (267)
.. .++....+.|+...+.+.|-. ..+++++ .++.+.+||..-......+. ..+...++++++.|..+.+
T Consensus 2280 ~~--pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~----~~H~~gaT~l~~~P~~qll 2351 (2439)
T KOG1064|consen 2280 AS--PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH----TCHDGGATVLAYAPKHQLL 2351 (2439)
T ss_pred cC--CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee----eecCCCceEEEEcCcceEE
Confidence 75 456777888999999999875 5666664 57899999975443333322 2344568999999999999
Q ss_pred EEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCceE
Q 024451 201 FAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGYR 264 (267)
Q Consensus 201 ~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~~ 264 (267)
++|+.+|.|++||++..+....+. . +. ...++++|+..|.++||++.++.
T Consensus 2352 isggr~G~v~l~D~rqrql~h~~~---------~----~~-~~~~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2352 ISGGRKGEVCLFDIRQRQLRHTFQ---------A----LD-TREYFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred EecCCcCcEEEeehHHHHHHHHhh---------h----hh-hhheeeccCcccceEEEEccccc
Confidence 999999999999998776554321 1 33 56789999999999999988764
No 238
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=3.3e-11 Score=99.34 Aligned_cols=236 Identities=19% Similarity=0.262 Sum_probs=145.4
Q ss_pred ceeeCCCCCeE-EEccCCCeEEEeecCCCCCCCCCCcccccccCCee-eEEEEEEecCCCeeEEEeeCCCeEEEEeCCCC
Q 024451 2 TCAFSPTGQSV-ACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKG-YVSCCQYVPDEDTHLITSSGDQTCVLWDITTG 79 (267)
Q Consensus 2 ~~~~~~~g~~l-~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~ 79 (267)
.+..+|||+++ +||-.--.|++||+.. +...+..|.. .+..+-+..++-..++--..|.+|.+-..- |
T Consensus 56 ~ik~s~DGqY~lAtG~YKP~ikvydlan---------LSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~-G 125 (703)
T KOG2321|consen 56 RIKVSPDGQYLLATGTYKPQIKVYDLAN---------LSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY-G 125 (703)
T ss_pred eeEecCCCcEEEEecccCCceEEEEccc---------ceeeeeecccccceeEEEeccchhhheEeecCceeeehhhc-C
Confidence 35679999875 5566788999999864 2222333332 222222222222223333455555433211 1
Q ss_pred eeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCC
Q 024451 80 LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD 159 (267)
Q Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 159 (267)
....+ . -...-..++++.++-.+++ ++....|.=+++.++ ..+..+....+.++++..++...++++|+.|
T Consensus 126 ~hy~~---R----IP~~GRDm~y~~~scDly~-~gsg~evYRlNLEqG-rfL~P~~~~~~~lN~v~in~~hgLla~Gt~~ 196 (703)
T KOG2321|consen 126 RHYRT---R----IPKFGRDMKYHKPSCDLYL-VGSGSEVYRLNLEQG-RFLNPFETDSGELNVVSINEEHGLLACGTED 196 (703)
T ss_pred eeeee---e----cCcCCccccccCCCccEEE-eecCcceEEEEcccc-ccccccccccccceeeeecCccceEEecccC
Confidence 00000 0 0011234445544444444 444446777777754 3566666666889999999999999999999
Q ss_pred CcEEEEeCCCCeeeEEEEe-ec-----CCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccce
Q 024451 160 GTCRLFDIRTGHQLQVYYQ-QH-----GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGR 233 (267)
Q Consensus 160 ~~i~iwd~~~~~~~~~~~~-~~-----~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 233 (267)
|.|..||.++.+....+.. .+ .....+.|+++.|+.+|-.+++|+++|.++|||++..+++..-. ....-+
T Consensus 197 g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kd---h~~e~p 273 (703)
T KOG2321|consen 197 GVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKD---HGYELP 273 (703)
T ss_pred ceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecc---cCCccc
Confidence 9999999987654433211 11 12233458999999999999999999999999998877654321 123458
Q ss_pred EEEEEECCC--CCeEEEeECCCcEEEEec
Q 024451 234 ITCLGLSAD--GSALCTGSWDTNLKIWAF 260 (267)
Q Consensus 234 v~~~~~~p~--~~~l~sgs~dg~i~~w~~ 260 (267)
|..+.|.+. ++.++|.. ...++||+-
T Consensus 274 i~~l~~~~~~~q~~v~S~D-k~~~kiWd~ 301 (703)
T KOG2321|consen 274 IKKLDWQDTDQQNKVVSMD-KRILKIWDE 301 (703)
T ss_pred eeeecccccCCCceEEecc-hHHhhhccc
Confidence 999999876 45666653 456899973
No 239
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.42 E-value=6.4e-11 Score=97.78 Aligned_cols=190 Identities=15% Similarity=0.231 Sum_probs=138.1
Q ss_pred CCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEe-------------------CCCCeEEEEecCCCe
Q 024451 58 EDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS-------------------GSNSRMFVSGSCDST 118 (267)
Q Consensus 58 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~-------------------~~~~~~~~s~~~d~~ 118 (267)
...++|....||.+|+||..+......|... ..-++...+..|. ..+..+++-|...|.
T Consensus 4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~--~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPI--ASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred hhheEeecCCCCeEEEEEccCceeeeeeccc--hhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 3468999999999999999877654444211 1112222222221 012345677888899
Q ss_pred EEEEeCCCcccceEEe--eccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccC
Q 024451 119 ARLWDTRVASRAVRTF--HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS 196 (267)
Q Consensus 119 i~iwd~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 196 (267)
|.++++.... ....+ ..|-+.|+++.++.+-..|.+++.|..+..|+....+....+.. ....+.+++.+|+
T Consensus 82 v~~ys~~~g~-it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~-----~~~~~~sl~is~D 155 (541)
T KOG4547|consen 82 VLLYSVAGGE-ITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKE-----QKPLVSSLCISPD 155 (541)
T ss_pred EEEEEecCCe-EEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeecc-----CCCccceEEEcCC
Confidence 9999986433 33333 46888999999998889999999999999999987665444322 2235899999999
Q ss_pred CCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCC-----CCeEE-EeECCCcEEEEecC
Q 024451 197 GRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD-----GSALC-TGSWDTNLKIWAFG 261 (267)
Q Consensus 197 ~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-----~~~l~-sgs~dg~i~~w~~~ 261 (267)
+..+++++ ++|.+||.++.+.+..+ .+|.++|.++.|.-+ |++++ +...+..+.+|-..
T Consensus 156 ~~~l~~as--~~ik~~~~~~kevv~~f----tgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 156 GKILLTAS--RQIKVLDIETKEVVITF----TGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred CCEEEecc--ceEEEEEccCceEEEEe----cCCCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence 99999886 88999999999888776 689999999999876 66655 45557778888653
No 240
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.39 E-value=8.6e-11 Score=99.28 Aligned_cols=190 Identities=18% Similarity=0.222 Sum_probs=118.6
Q ss_pred ceeeCCCCCeEEEccCC---CeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCC--eEEEEeC
Q 024451 2 TCAFSPTGQSVACGGLD---SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ--TCVLWDI 76 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d---~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~--~v~iwd~ 76 (267)
..+|+|+|+.|+.+..+ ..|.+||+.... ...+..+.+.+.++.|+|++..++++.+.++ .|.+||+
T Consensus 194 ~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~--------~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~ 265 (417)
T TIGR02800 194 SPAWSPDGQKLAYVSFESGKPEIYVQDLATGQ--------REKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDL 265 (417)
T ss_pred cccCCCCCCEEEEEEcCCCCcEEEEEECCCCC--------EEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEEC
Confidence 45799999999987654 479999986421 1122334455667899998766656666554 5888898
Q ss_pred CCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCC--eEEEEeCCCcccceEEeeccccceeEEEEecCCCEEE
Q 024451 77 TTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS--TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFG 154 (267)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 154 (267)
.++...... .+........|++.+..++.+...++ .|.++++... ....+..+........|+|++++++
T Consensus 266 ~~~~~~~l~------~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~--~~~~l~~~~~~~~~~~~spdg~~i~ 337 (417)
T TIGR02800 266 DGKQLTRLT------NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGG--EVRRLTFRGGYNASPSWSPDGDLIA 337 (417)
T ss_pred CCCCEEECC------CCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCC--CEEEeecCCCCccCeEECCCCCEEE
Confidence 876543322 12222334567765444444444444 4667776532 2333443455667889999999999
Q ss_pred EeeCCC---cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCC---eEEEEeC
Q 024451 155 TGSDDG---TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG---DCYVWDT 214 (267)
Q Consensus 155 ~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg---~i~i~d~ 214 (267)
....++ .|.+||+.++.. ..+.. .. ......|+|+++.|+..+.++ .+++.+.
T Consensus 338 ~~~~~~~~~~i~~~d~~~~~~-~~l~~-~~-----~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~ 396 (417)
T TIGR02800 338 FVHREGGGFNIAVMDLDGGGE-RVLTD-TG-----LDESPSFAPNGRMILYATTRGGRGVLGLVST 396 (417)
T ss_pred EEEccCCceEEEEEeCCCCCe-EEccC-CC-----CCCCceECCCCCEEEEEEeCCCcEEEEEEEC
Confidence 888776 788999877543 22211 11 123457999999988877654 4555553
No 241
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.39 E-value=3.7e-10 Score=87.47 Aligned_cols=240 Identities=16% Similarity=0.202 Sum_probs=151.6
Q ss_pred eeeCCCCCeEEE-ccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 3 CAFSPTGQSVAC-GGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 3 ~~~~~~g~~l~~-~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
+.|..|.-++++ +..|+.|.+|++..++ -...+......+.++.|+|++...|.+...|-.|.+|.+.++..
T Consensus 54 ieW~ads~~ilC~~yk~~~vqvwsl~Qpe-------w~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~ 126 (447)
T KOG4497|consen 54 IEWKADSCHILCVAYKDPKVQVWSLVQPE-------WYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG 126 (447)
T ss_pred eeeeccceeeeeeeeccceEEEEEeecce-------eEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEecccee
Confidence 346666655555 4568899999997653 34455556677889999999877788888999999999988653
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEe-----------------------------------cC-CCeEEEEeCC
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSG-----------------------------------SC-DSTARLWDTR 125 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~-----------------------------------~~-d~~i~iwd~~ 125 (267)
... + .-+..+.-++++++ +++.+.. +- +..+.+||.-
T Consensus 127 ~~~-~-----~pK~~~kg~~f~~d-g~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~ 199 (447)
T KOG4497|consen 127 YLL-P-----HPKTNVKGYAFHPD-GQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNV 199 (447)
T ss_pred EEe-c-----ccccCceeEEECCC-CceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecch
Confidence 322 1 01111233444432 2222111 11 2345667643
Q ss_pred CcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEE-----------------------------
Q 024451 126 VASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVY----------------------------- 176 (267)
Q Consensus 126 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----------------------------- 176 (267)
- ...+..+. -.-.+..++|+|.+++++.|+.|+.+|+-+--+-+....+
T Consensus 200 L-eykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cL 277 (447)
T KOG4497|consen 200 L-EYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCL 277 (447)
T ss_pred h-hheeeeee-eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhccccc
Confidence 2 12222221 2246889999999999999999999988552221110000
Q ss_pred ----------------------------Ee----ecCCCCCCcEEEEEEccCCCEEEEEEeC--CeEEEEeCCccceeee
Q 024451 177 ----------------------------YQ----QHGENEIPHVTSIAFSISGRLLFAGYSN--GDCYVWDTLLAKVVLN 222 (267)
Q Consensus 177 ----------------------------~~----~~~~~~~~~v~~~~~s~~~~~l~~g~~d--g~i~i~d~~~~~~~~~ 222 (267)
.. ....+....+.-++|++|..++++-..+ ..+.+||++..+...-
T Consensus 278 sf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~av 357 (447)
T KOG4497|consen 278 SFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAV 357 (447)
T ss_pred ccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhh
Confidence 00 0000112235678999999999987654 6899999987664432
Q ss_pred cccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCce
Q 024451 223 LGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGY 263 (267)
Q Consensus 223 ~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~ 263 (267)
+ ....+|....|+|...-|+.+...-++.+|...|-
T Consensus 358 L-----iQk~piraf~WdP~~prL~vctg~srLY~W~psg~ 393 (447)
T KOG4497|consen 358 L-----IQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGP 393 (447)
T ss_pred h-----hhccceeEEEeCCCCceEEEEcCCceEEEEcCCCc
Confidence 2 12347999999999888887777778999987763
No 242
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.38 E-value=4.2e-11 Score=104.67 Aligned_cols=192 Identities=21% Similarity=0.276 Sum_probs=140.1
Q ss_pred eCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEE---EEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 5 FSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSC---CQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 5 ~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~---~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
+.-+...++.+..++.+.+||..... ....+..+-....++ +.+++ ++-++++|+.-+.|.+|+......
T Consensus 95 l~~e~k~i~l~~~~ns~~i~d~~~~~------~~~~i~~~er~~l~~~~~~g~s~-~~~~i~~gsv~~~iivW~~~~dn~ 167 (967)
T KOG0974|consen 95 LFEENKKIALVTSRNSLLIRDSKNSS------VLSKIQSDERCTLYSSLIIGDSA-EELYIASGSVFGEIIVWKPHEDNK 167 (967)
T ss_pred hhhhcceEEEEEcCceEEEEecccCc------eehhcCCCceEEEEeEEEEeccC-cEEEEEeccccccEEEEeccccCC
Confidence 44566778888999999999976421 011111122222222 22334 346889999999999999862221
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT 161 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 161 (267)
.. ...+|++.|+++.++. +++++++.+.|.++|+|++..........-+|...+..+.|+|+ .++++++|-+
T Consensus 168 -p~----~l~GHeG~iF~i~~s~-dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedct 239 (967)
T KOG0974|consen 168 -PI----RLKGHEGSIFSIVTSL-DGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCT 239 (967)
T ss_pred -cc----eecccCCceEEEEEcc-CCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceE
Confidence 11 2368999999999985 57889999999999999998655444355689999999999988 9999999999
Q ss_pred EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCc
Q 024451 162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL 216 (267)
Q Consensus 162 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~ 216 (267)
.++|+.. +.++..+.++. ...+..+..+++...++++..||.+++||+..
T Consensus 240 crvW~~~-~~~l~~y~~h~----g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 240 CRVWGVN-GTQLEVYDEHS----GKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred EEEEecc-cceehhhhhhh----hcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 9999764 34444443322 23589999999999999999999999999643
No 243
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=3.9e-10 Score=95.75 Aligned_cols=212 Identities=15% Similarity=0.119 Sum_probs=119.8
Q ss_pred ceeeCCCCCeEEEccCC-C--eEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCe--EEEEeC
Q 024451 2 TCAFSPTGQSVACGGLD-S--VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT--CVLWDI 76 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d-~--~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~--v~iwd~ 76 (267)
...|+|||+.|+..+.+ + .|.+||+.... ......+.++ .....|+|++..++++.+.++. |.+||+
T Consensus 222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~-----~~~lt~~~g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl 293 (448)
T PRK04792 222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQV-----REKVTSFPGI---NGAPRFSPDGKKLALVLSKDGQPEIYVVDI 293 (448)
T ss_pred CceECCCCCEEEEEEecCCCcEEEEEECCCCC-----eEEecCCCCC---cCCeeECCCCCEEEEEEeCCCCeEEEEEEC
Confidence 45799999998876543 2 57777765421 1112222232 3467899988766666777775 777788
Q ss_pred CCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCe--EEEEeCCCcccceEEeeccccceeEEEEecCCCEEE
Q 024451 77 TTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST--ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFG 154 (267)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~--i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 154 (267)
+++...... .+........|++.+..++.+...++. |.++|+.... ...+..+........|+|+|++++
T Consensus 294 ~tg~~~~lt------~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~--~~~Lt~~g~~~~~~~~SpDG~~l~ 365 (448)
T PRK04792 294 ATKALTRIT------RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK--VSRLTFEGEQNLGGSITPDGRSMI 365 (448)
T ss_pred CCCCeEECc------cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC--EEEEecCCCCCcCeeECCCCCEEE
Confidence 776543322 122334566788765555555555554 5555654322 222221222234578999999987
Q ss_pred EeeC-CC--cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeC-C--eEEEEeCCccceeeecccccC
Q 024451 155 TGSD-DG--TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN-G--DCYVWDTLLAKVVLNLGSLQN 228 (267)
Q Consensus 155 ~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d-g--~i~i~d~~~~~~~~~~~~~~~ 228 (267)
..+. ++ .|.++|+.+++.. .+... .. .....|+|+|+.|+....+ | .+++++.. ++....+ .
T Consensus 366 ~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~-----d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G~~~~~l----~ 433 (448)
T PRK04792 366 MVNRTNGKFNIARQDLETGAMQ-VLTST-RL-----DESPSVAPNGTMVIYSTTYQGKQVLAAVSID-GRFKARL----P 433 (448)
T ss_pred EEEecCCceEEEEEECCCCCeE-EccCC-CC-----CCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEC----c
Confidence 7654 34 3555777766532 22111 11 1233699999988776543 3 47777753 3332222 2
Q ss_pred CccceEEEEEECC
Q 024451 229 SHEGRITCLGLSA 241 (267)
Q Consensus 229 ~~~~~v~~~~~~p 241 (267)
.+.+.+...+|+|
T Consensus 434 ~~~g~~~~p~Wsp 446 (448)
T PRK04792 434 AGQGEVKSPAWSP 446 (448)
T ss_pred CCCCCcCCCccCC
Confidence 2344566777776
No 244
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=1.9e-09 Score=91.55 Aligned_cols=201 Identities=15% Similarity=0.155 Sum_probs=118.3
Q ss_pred ccCCeeeEEEEEEecCCCeeEEEeeCCC--eEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCe-
Q 024451 42 LSGHKGYVSCCQYVPDEDTHLITSSGDQ--TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST- 118 (267)
Q Consensus 42 ~~~h~~~v~~~~~~~~~~~~l~s~~~d~--~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~- 118 (267)
+..+...+.+..|+|++..++++...++ .|.+||+.++....... .........|+|.+..++++.+.++.
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~------~~g~~~~~~wSPDG~~La~~~~~~g~~ 286 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTS------FPGINGAPRFSPDGKKLALVLSKDGQP 286 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecC------CCCCcCCeeECCCCCEEEEEEeCCCCe
Confidence 3445667888999998764444443343 58888998775433221 11122356788766656556666665
Q ss_pred -EEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeC-CC--cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEc
Q 024451 119 -ARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD-DG--TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFS 194 (267)
Q Consensus 119 -i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s 194 (267)
|.++|+... ....+..+........|+|+++.++..+. ++ .|.++|+.+++....... . ......+|+
T Consensus 287 ~Iy~~dl~tg--~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~--g----~~~~~~~~S 358 (448)
T PRK04792 287 EIYVVDIATK--ALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFE--G----EQNLGGSIT 358 (448)
T ss_pred EEEEEECCCC--CeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecC--C----CCCcCeeEC
Confidence 666777532 34444445555678899999998876553 34 466667766654332211 1 112346899
Q ss_pred cCCCEEEEEEe-CC--eEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeEC-CCc--EEEEecCc
Q 024451 195 ISGRLLFAGYS-NG--DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW-DTN--LKIWAFGG 262 (267)
Q Consensus 195 ~~~~~l~~g~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~-dg~--i~~w~~~~ 262 (267)
|+|++++.... ++ .|.++|+..++... +. ... ......|+|||+.|+..+. ++. +.+++..|
T Consensus 359 pDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt---~~~--~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G 426 (448)
T PRK04792 359 PDGRSMIMVNRTNGKFNIARQDLETGAMQV-LT---STR--LDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDG 426 (448)
T ss_pred CCCCEEEEEEecCCceEEEEEECCCCCeEE-cc---CCC--CCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 99998877654 34 45667776554321 11 111 1123479999998876554 444 44555554
No 245
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=1.6e-09 Score=91.95 Aligned_cols=201 Identities=16% Similarity=0.139 Sum_probs=121.9
Q ss_pred ccCCeeeEEEEEEecCCCeeEEEeeCC--CeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCC--
Q 024451 42 LSGHKGYVSCCQYVPDEDTHLITSSGD--QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS-- 117 (267)
Q Consensus 42 ~~~h~~~v~~~~~~~~~~~~l~s~~~d--~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~-- 117 (267)
+..+...+....|+|++..++++...+ ..|.+||+.++....... .........|+|.+.+++.+...++
T Consensus 194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~------~~g~~~~~~~SpDG~~la~~~~~~g~~ 267 (430)
T PRK00178 194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITN------FEGLNGAPAWSPDGSKLAFVLSKDGNP 267 (430)
T ss_pred EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccC------CCCCcCCeEECCCCCEEEEEEccCCCc
Confidence 345667788999999875433433333 368899998876543321 1122335778876555555655555
Q ss_pred eEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeC-CC--cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEc
Q 024451 118 TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD-DG--TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFS 194 (267)
Q Consensus 118 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s 194 (267)
.|.++|+... ....+..+........|+|+++.++..+. ++ .|.++|+.+++....... . .......|+
T Consensus 268 ~Iy~~d~~~~--~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~--~----~~~~~~~~S 339 (430)
T PRK00178 268 EIYVMDLASR--QLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFV--G----NYNARPRLS 339 (430)
T ss_pred eEEEEECCCC--CeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC--C----CCccceEEC
Confidence 5778887642 33445445555677899999998776553 33 466777776654332211 1 123456799
Q ss_pred cCCCEEEEEEeC-C--eEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECC-Cc--EEEEecCc
Q 024451 195 ISGRLLFAGYSN-G--DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD-TN--LKIWAFGG 262 (267)
Q Consensus 195 ~~~~~l~~g~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d-g~--i~~w~~~~ 262 (267)
|+++.++....+ + .|+++|+.+++... +. ... ......|+|||+.++..+.+ +. +.+.++.|
T Consensus 340 pdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt---~~~--~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 340 ADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LT---DTS--LDESPSVAPNGTMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred CCCCEEEEEEccCCceEEEEEECCCCCEEE-cc---CCC--CCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 999998876643 3 58888987654322 11 111 11245899999998876653 33 44555544
No 246
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=9.1e-10 Score=93.40 Aligned_cols=212 Identities=13% Similarity=0.111 Sum_probs=122.2
Q ss_pred ceeeCCCCCeEEEccCC---CeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCC--eEEEEeC
Q 024451 2 TCAFSPTGQSVACGGLD---SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ--TCVLWDI 76 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d---~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~--~v~iwd~ 76 (267)
...|+|||+.|+..+.+ ..|.+|++.... . ..+....+.+....|+|++..++++.+.++ .|.+||+
T Consensus 203 ~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~-----~---~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~ 274 (430)
T PRK00178 203 SPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGR-----R---EQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDL 274 (430)
T ss_pred eeeECCCCCEEEEEEcCCCCCEEEEEECCCCC-----E---EEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEEC
Confidence 34799999999876644 357788875421 1 111222233456789998766555666555 5888899
Q ss_pred CCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCC--eEEEEeCCCcccceEEeeccccceeEEEEecCCCEEE
Q 024451 77 TTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS--TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFG 154 (267)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 154 (267)
.++...... .+........|++.+..++.+...++ .|.++++.... ...+...........|+|+++.++
T Consensus 275 ~~~~~~~lt------~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~--~~~lt~~~~~~~~~~~Spdg~~i~ 346 (430)
T PRK00178 275 ASRQLSRVT------NHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR--AERVTFVGNYNARPRLSADGKTLV 346 (430)
T ss_pred CCCCeEEcc------cCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC--EEEeecCCCCccceEECCCCCEEE
Confidence 877543322 12223445678876555555555544 46666764322 222221122234578999999988
Q ss_pred EeeCC-C--cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeC---CeEEEEeCCccceeeecccccC
Q 024451 155 TGSDD-G--TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN---GDCYVWDTLLAKVVLNLGSLQN 228 (267)
Q Consensus 155 ~~~~d-~--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d---g~i~i~d~~~~~~~~~~~~~~~ 228 (267)
....+ + .|.++|+.+++... +... . ......|+|+|+.++..+.+ ..|++++..... ...+ .
T Consensus 347 ~~~~~~~~~~l~~~dl~tg~~~~-lt~~--~----~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~-~~~l----~ 414 (430)
T PRK00178 347 MVHRQDGNFHVAAQDLQRGSVRI-LTDT--S----LDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRV-RLPL----P 414 (430)
T ss_pred EEEccCCceEEEEEECCCCCEEE-ccCC--C----CCCCceECCCCCEEEEEEecCCceEEEEEECCCCc-eEEC----c
Confidence 76643 3 57889988765432 2211 1 11234799999988776654 356667764322 1111 1
Q ss_pred CccceEEEEEECC
Q 024451 229 SHEGRITCLGLSA 241 (267)
Q Consensus 229 ~~~~~v~~~~~~p 241 (267)
.+.+.+...+|+|
T Consensus 415 ~~~g~~~~p~ws~ 427 (430)
T PRK00178 415 TAQGEVREPSWSP 427 (430)
T ss_pred CCCCCcCCCccCC
Confidence 2344556667776
No 247
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.31 E-value=4.8e-10 Score=85.48 Aligned_cols=237 Identities=16% Similarity=0.135 Sum_probs=147.7
Q ss_pred CCC-eEEEccCCCeEEEeecCCCCCCCCCCcccccccCCee---eEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEE
Q 024451 8 TGQ-SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKG---YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS 83 (267)
Q Consensus 8 ~g~-~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~ 83 (267)
+|. .|+-+..+|.|.+|........ . ..+-+...+- .--++.|.+.+. .++++-.+|.+.+-+.....
T Consensus 83 ~g~~~l~~a~a~G~i~~~r~~~~~ss-~---~L~~ls~~ki~~~~~lslD~~~~~~-~i~vs~s~G~~~~v~~t~~~--- 154 (339)
T KOG0280|consen 83 DGDFNLLDAHARGQIQLYRNDEDESS-V---HLRGLSSKKISVVEALSLDISTSGT-KIFVSDSRGSISGVYETEMV--- 154 (339)
T ss_pred CccceeeeccccceEEEEeeccceee-e---eecccchhhhhheeeeEEEeeccCc-eEEEEcCCCcEEEEecceee---
Confidence 444 5677778888888876542111 0 1111111111 234677887665 47788888888744433221
Q ss_pred EeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEE-eeccccceeEEEEec-CCCEEEEeeCCCc
Q 024451 84 VFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRT-FHGHEGDVNTVKFFP-DGNRFGTGSDDGT 161 (267)
Q Consensus 84 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~~i~~~~~~~-~~~~l~~~~~d~~ 161 (267)
....+.-.+|+-.+....|+..+..++.+|+.|+.+..||+|.+...+.+ .+-|...|.++.-+| .+.++++|+-|..
T Consensus 155 le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~ 234 (339)
T KOG0280|consen 155 LEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDEC 234 (339)
T ss_pred eeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccc
Confidence 22223335788899999998777788899999999999999854433322 456788888888776 5779999999999
Q ss_pred EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCC--EEEEEEeCCeEEEEeCCcccee-eecccccCCccceEEEEE
Q 024451 162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR--LLFAGYSNGDCYVWDTLLAKVV-LNLGSLQNSHEGRITCLG 238 (267)
Q Consensus 162 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~g~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~v~~~~ 238 (267)
|++||+++-.+. ++. ....+.|..++++|.-. .++++-.+| .+|-+....... .......+.|.+-.....
T Consensus 235 i~~~DtRnm~kP--l~~---~~v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~D 308 (339)
T KOG0280|consen 235 IRVLDTRNMGKP--LFK---AKVGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGD 308 (339)
T ss_pred eeeeehhcccCc--ccc---CccccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccccceeeccc
Confidence 999999853321 111 22235799999988543 333333333 455554332111 111223356777777777
Q ss_pred ECCCCCeEEEeE-CCCcEE-EE
Q 024451 239 LSADGSALCTGS-WDTNLK-IW 258 (267)
Q Consensus 239 ~~p~~~~l~sgs-~dg~i~-~w 258 (267)
|.....+||+|| .|+.++ +|
T Consensus 309 Wd~~~~~lATCsFYDk~~~~~W 330 (339)
T KOG0280|consen 309 WDSKDSFLATCSFYDKKIRQLW 330 (339)
T ss_pred cccccceeeeeeccccceeeee
Confidence 755556788865 477766 78
No 248
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.31 E-value=1e-10 Score=89.11 Aligned_cols=161 Identities=19% Similarity=0.198 Sum_probs=118.2
Q ss_pred CceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe
Q 024451 1 MTCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL 80 (267)
Q Consensus 1 ~~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 80 (267)
+++.|++.|..++++-.+|.+.+-+.... .+.-....++|.-+.+.+.|+..+.+++++|+.|+.+..||++.+.
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~-----~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~ 199 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYETEM-----VLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK 199 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEeccee-----eeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc
Confidence 35678899999999999999995554321 2223347889999999999987777789999999999999998443
Q ss_pred eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCC-EEEEeeCC
Q 024451 81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN-RFGTGSDD 159 (267)
Q Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d 159 (267)
..++. ...-|..-|.++.-+++....++||+.|-.|++||.|...+++..-. -.+.|..+..+|.-. .+..++.-
T Consensus 200 -~~i~~--n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh 275 (339)
T KOG0280|consen 200 -TFIWH--NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMH 275 (339)
T ss_pred -ceeee--cceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHh
Confidence 22221 12357888999988888788999999999999999986666654432 247899999998532 23334444
Q ss_pred CcEEEEeCCCC
Q 024451 160 GTCRLFDIRTG 170 (267)
Q Consensus 160 ~~i~iwd~~~~ 170 (267)
+-.+|-+...+
T Consensus 276 ~G~ki~~~~~~ 286 (339)
T KOG0280|consen 276 NGAKILDSSDK 286 (339)
T ss_pred cCceEEEeccc
Confidence 55666666543
No 249
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.30 E-value=2e-08 Score=82.85 Aligned_cols=190 Identities=16% Similarity=0.167 Sum_probs=117.3
Q ss_pred eEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccc
Q 024451 11 SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ 90 (267)
Q Consensus 11 ~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~ 90 (267)
.+++-..++.|.+.|..... ....+......-..+.|+|++ ++++.++.|+.|.++|+.+.+....+..
T Consensus 8 ~~V~~~~~~~v~viD~~t~~-------~~~~i~~~~~~h~~~~~s~Dg-r~~yv~~rdg~vsviD~~~~~~v~~i~~--- 76 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNK-------VVARIPTGGAPHAGLKFSPDG-RYLYVANRDGTVSVIDLATGKVVATIKV--- 76 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-S-------EEEEEE-STTEEEEEE-TT-S-SEEEEEETTSEEEEEETTSSSEEEEEE----
T ss_pred EEEEecCCCEEEEEECCCCe-------EEEEEcCCCCceeEEEecCCC-CEEEEEcCCCeEEEEECCcccEEEEEec---
Confidence 44677788999999976522 344444332222335678865 5788888999999999999876665531
Q ss_pred cCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeec-------cccceeEEEEecCCCEEEEeeCC-CcE
Q 024451 91 SGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG-------HEGDVNTVKFFPDGNRFGTGSDD-GTC 162 (267)
Q Consensus 91 ~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~d-~~i 162 (267)
......+++++.+..++++...++.+.++|.++. ++++.+.. ....+..+..+|....++..-.| +.|
T Consensus 77 ---G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tl-e~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I 152 (369)
T PF02239_consen 77 ---GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETL-EPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEI 152 (369)
T ss_dssp ---SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT---EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEE
T ss_pred ---CCCcceEEEcCCCCEEEEEecCCCceeEeccccc-cceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeE
Confidence 2235678888655445555567899999998753 34444432 23456778888888867666655 788
Q ss_pred EEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEE-EeCCeEEEEeCCccce
Q 024451 163 RLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAG-YSNGDCYVWDTLLAKV 219 (267)
Q Consensus 163 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g-~~dg~i~i~d~~~~~~ 219 (267)
.+-|....+.+..-.... ........|+|++++++++ ..+..|-++|.++.+.
T Consensus 153 ~vVdy~d~~~~~~~~i~~----g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~ 206 (369)
T PF02239_consen 153 WVVDYSDPKNLKVTTIKV----GRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL 206 (369)
T ss_dssp EEEETTTSSCEEEEEEE------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE
T ss_pred EEEEeccccccceeeecc----cccccccccCcccceeeecccccceeEEEeeccceE
Confidence 888877654433221111 1246788999999988765 4567888888766543
No 250
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.29 E-value=1.5e-11 Score=112.77 Aligned_cols=187 Identities=17% Similarity=0.327 Sum_probs=134.8
Q ss_pred CCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEe
Q 024451 6 SPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVF 85 (267)
Q Consensus 6 ~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 85 (267)
+|...+.+||+.||.+++|....+. ++-+-++ .|. ..|+.+.|+.++. .+..+..||.+-+|.... ...+
T Consensus 2217 Hp~~~~Yltgs~dgsv~~~~w~~~~----~v~~~rt-~g~-s~vtr~~f~~qGn-k~~i~d~dg~l~l~q~~p---k~~~ 2286 (2439)
T KOG1064|consen 2217 HPSDPYYLTGSQDGSVRMFEWGHGQ----QVVCFRT-AGN-SRVTRSRFNHQGN-KFGIVDGDGDLSLWQASP---KPYT 2286 (2439)
T ss_pred CCCCceEEecCCCceEEEEeccCCC----eEEEeec-cCc-chhhhhhhcccCC-ceeeeccCCceeecccCC---ccee
Confidence 5777889999999999999876432 1112222 233 7788899988764 567788999999998862 1222
Q ss_pred CCccccCCccceEEEEEeCCCCeEEEEec---CCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcE
Q 024451 86 GGEFQSGHTADVLSVSISGSNSRMFVSGS---CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTC 162 (267)
Q Consensus 86 ~~~~~~~~~~~i~~~~~~~~~~~~~~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i 162 (267)
.. +.|......+.|-. ..+++++ .++.+.+||.............|.+.++++++-|....|++||++|.|
T Consensus 2287 s~---qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v 2360 (2439)
T KOG1064|consen 2287 SW---QCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEV 2360 (2439)
T ss_pred cc---ccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcE
Confidence 21 35777777777764 2455543 467899999765443333347899999999999999999999999999
Q ss_pred EEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeec
Q 024451 163 RLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL 223 (267)
Q Consensus 163 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~ 223 (267)
++||++..+....+.. ++ ...++++|+..|.++||++.....+..+
T Consensus 2361 ~l~D~rqrql~h~~~~--------------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~ 2406 (2439)
T KOG1064|consen 2361 CLFDIRQRQLRHTFQA--------------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTF 2406 (2439)
T ss_pred EEeehHHHHHHHHhhh--------------hh-hhheeeccCcccceEEEEccccchhhcC
Confidence 9999987654433211 34 5678999999999999998766544433
No 251
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.28 E-value=2.5e-08 Score=92.54 Aligned_cols=258 Identities=12% Similarity=0.144 Sum_probs=153.7
Q ss_pred eeeCC-CCCeEEEccCCCeEEEeecCCCCCC----CCCCcc-ccc-ccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEe
Q 024451 3 CAFSP-TGQSVACGGLDSVCSIFNLNSPTDK----DGNLPV-SRM-LSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWD 75 (267)
Q Consensus 3 ~~~~~-~g~~l~~~~~d~~v~~w~~~~~~~~----~~~~~~-~~~-~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd 75 (267)
+++++ +|+++++-...+.|.+||....... .+.... ... -.++-..-..+++.+++..++++-...+.|+.+|
T Consensus 573 vavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id 652 (1057)
T PLN02919 573 LAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREID 652 (1057)
T ss_pred EEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEe
Confidence 45665 4677888788889999987542100 000000 000 0011123456788876543344444567899999
Q ss_pred CCCCeeEEEeCCcccc-----CC-------ccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeecc------
Q 024451 76 ITTGLRTSVFGGEFQS-----GH-------TADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH------ 137 (267)
Q Consensus 76 ~~~~~~~~~~~~~~~~-----~~-------~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~------ 137 (267)
..++.. .++.+.... +. -.....+++++.++.++++...++.|++||..... +..+.+.
T Consensus 653 ~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~--v~~~~G~G~~~~~ 729 (1057)
T PLN02919 653 FVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV--TRVFSGDGYERNL 729 (1057)
T ss_pred cCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe--EEEEecCCccccC
Confidence 877643 222211000 00 11235688887677888888889999999975422 2222111
Q ss_pred ---------ccceeEEEEecCCC-EEEEeeCCCcEEEEeCCCCeeeEEEEe---------ecCCC-------CCCcEEEE
Q 024451 138 ---------EGDVNTVKFFPDGN-RFGTGSDDGTCRLFDIRTGHQLQVYYQ---------QHGEN-------EIPHVTSI 191 (267)
Q Consensus 138 ---------~~~i~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~---------~~~~~-------~~~~v~~~ 191 (267)
-.....++++|+++ .+++-+.++.|++||++++........ ..+.. .......+
T Consensus 730 ~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gv 809 (1057)
T PLN02919 730 NGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGV 809 (1057)
T ss_pred CCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCcee
Confidence 11235689999988 455666789999999987653211100 00000 01124688
Q ss_pred EEccCCCEEEEEEeCCeEEEEeCCccceeeeccc----c-----cCCccceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451 192 AFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS----L-----QNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 192 ~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~----~-----~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~ 262 (267)
+++++|..+++-+.++.|++||..++........ . ....-.....++++|+|+++++-+.++.|++|++..
T Consensus 810 avd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~ 889 (1057)
T PLN02919 810 LCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNK 889 (1057)
T ss_pred eEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence 9999999888888999999999876543321110 0 011112456899999999999888999999999865
Q ss_pred e
Q 024451 263 Y 263 (267)
Q Consensus 263 ~ 263 (267)
.
T Consensus 890 ~ 890 (1057)
T PLN02919 890 G 890 (1057)
T ss_pred C
Confidence 3
No 252
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.27 E-value=3e-10 Score=88.37 Aligned_cols=217 Identities=18% Similarity=0.223 Sum_probs=137.3
Q ss_pred eeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee-EEEeCCcccc-----------CCccceEEEEEeCC-CCeEEEE
Q 024451 46 KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR-TSVFGGEFQS-----------GHTADVLSVSISGS-NSRMFVS 112 (267)
Q Consensus 46 ~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~-~~~~~~~~~~-----------~~~~~i~~~~~~~~-~~~~~~s 112 (267)
..-|.++.|...+ .+|++|..+|.|.++.-+.... ...+...++. --...|+.+.|..+ +...++.
T Consensus 25 adiis~vef~~~G-e~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 25 ADIISAVEFDHYG-ERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hcceeeEEeeccc-ceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 3557889998876 5899999999999996543221 1111111110 12345677777753 4456778
Q ss_pred ecCCCeEEEEeCCCccc----------------------------------ceEEe-eccccceeEEEEecCCCEEEEee
Q 024451 113 GSCDSTARLWDTRVASR----------------------------------AVRTF-HGHEGDVNTVKFFPDGNRFGTGS 157 (267)
Q Consensus 113 ~~~d~~i~iwd~~~~~~----------------------------------~~~~~-~~~~~~i~~~~~~~~~~~l~~~~ 157 (267)
.+.|.+|++|.+..... +.+.+ .+|..-|+++.+..|+..+++ .
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lS-A 182 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLS-A 182 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEee-c
Confidence 89999999997642110 01111 367777899999999888876 4
Q ss_pred CCCcEEEEeCCCCeeeEEEEeecCCC---CCCcEEEEEEccCC-CEEEEEEeCCeEEEEeCCccceeeecc------ccc
Q 024451 158 DDGTCRLFDIRTGHQLQVYYQQHGEN---EIPHVTSIAFSISG-RLLFAGYSNGDCYVWDTLLAKVVLNLG------SLQ 227 (267)
Q Consensus 158 ~d~~i~iwd~~~~~~~~~~~~~~~~~---~~~~v~~~~~s~~~-~~l~~g~~dg~i~i~d~~~~~~~~~~~------~~~ 227 (267)
.|-.|.+|+++-..+-..+......+ -..-|++..|+|.. +.++=.++.|.|++-|++.......-. ..+
T Consensus 183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp 262 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP 262 (433)
T ss_pred cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence 57899999986543322222111111 11247888899864 566667789999999987543221110 000
Q ss_pred C------CccceEEEEEECCCCCeEEEeECCCcEEEEecCceEe
Q 024451 228 N------SHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGYRR 265 (267)
Q Consensus 228 ~------~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~~~ 265 (267)
. .--..|..+.|+++|+|+++-+. -+|++||++...+
T Consensus 263 ~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~ 305 (433)
T KOG1354|consen 263 SSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAK 305 (433)
T ss_pred cchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCC
Confidence 0 11235888999999999997654 6899999865443
No 253
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.25 E-value=7.4e-09 Score=87.39 Aligned_cols=216 Identities=14% Similarity=0.130 Sum_probs=120.2
Q ss_pred eeeCCCCCeE---EEccCCCe--EEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCC----eEEE
Q 024451 3 CAFSPTGQSV---ACGGLDSV--CSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ----TCVL 73 (267)
Q Consensus 3 ~~~~~~g~~l---~~~~~d~~--v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~----~v~i 73 (267)
=.|+|||+.+ .+...++. |.+.++.... .+.+....+.....+|+|++..++++...++ .+.+
T Consensus 190 P~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~--------~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~ 261 (428)
T PRK01029 190 PTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPA--------GKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQS 261 (428)
T ss_pred ceEccCCCceEEEEEEccCCCceEEEEECCCCC--------ceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEE
Confidence 3699999752 24444444 4444554321 1112222333456789998876555554333 3455
Q ss_pred EeCCCC---eeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEe--CCCcccceEEeeccccceeEEEEec
Q 024451 74 WDITTG---LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWD--TRVASRAVRTFHGHEGDVNTVKFFP 148 (267)
Q Consensus 74 wd~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd--~~~~~~~~~~~~~~~~~i~~~~~~~ 148 (267)
|++..+ ....... ..........|+|.+..++.+...+|...+|. +.........+..+...+....|+|
T Consensus 262 ~~~~~g~~g~~~~lt~-----~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSP 336 (428)
T PRK01029 262 FSLETGAIGKPRRLLN-----EAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSP 336 (428)
T ss_pred eecccCCCCcceEeec-----CCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECC
Confidence 776642 2222221 11122345678876555555555667655664 3211222333444445667889999
Q ss_pred CCCEEEEeeCC---CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEe---CCeEEEEeCCccceeee
Q 024451 149 DGNRFGTGSDD---GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS---NGDCYVWDTLLAKVVLN 222 (267)
Q Consensus 149 ~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~---dg~i~i~d~~~~~~~~~ 222 (267)
+|+.++..+.+ ..|.+||+.+++.... ... ...+....|+|+|+.|+.... ...|+++|+..++...-
T Consensus 337 DG~~Laf~~~~~g~~~I~v~dl~~g~~~~L-t~~-----~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~L 410 (428)
T PRK01029 337 DGKKIAFCSVIKGVRQICVYDLATGRDYQL-TTS-----PENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKI 410 (428)
T ss_pred CCCEEEEEEcCCCCcEEEEEECCCCCeEEc-cCC-----CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe
Confidence 99988876543 4699999988765332 111 123567889999998875433 35788889766543321
Q ss_pred cccccCCccceEEEEEECCC
Q 024451 223 LGSLQNSHEGRITCLGLSAD 242 (267)
Q Consensus 223 ~~~~~~~~~~~v~~~~~~p~ 242 (267)
. ...+.+...+|+|-
T Consensus 411 t-----~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 411 V-----IGSGEKRFPSWGAF 425 (428)
T ss_pred e-----cCCCcccCceecCC
Confidence 1 12344566777774
No 254
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=6.9e-09 Score=85.60 Aligned_cols=235 Identities=17% Similarity=0.262 Sum_probs=138.9
Q ss_pred eeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCC-eeEE-----EeeCCCeEEEEeC
Q 024451 3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDED-THLI-----TSSGDQTCVLWDI 76 (267)
Q Consensus 3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~l~-----s~~~d~~v~iwd~ 76 (267)
..|++|..+ +.--..+.+.+|+..... . .. -+-|...|....++|... ..++ ..|.-..||||..
T Consensus 131 ~qfs~dEsl-~arlv~nev~f~~~~~f~-----~-~~--~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~ 201 (566)
T KOG2315|consen 131 PQFSIDESL-AARLVSNEVQFYDLGSFK-----T-IQ--HKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKY 201 (566)
T ss_pred cccccchhh-hhhhhcceEEEEecCCcc-----c-ee--eeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecc
Confidence 345555543 222334678888876421 1 11 122566778888887532 2333 2455567999987
Q ss_pred CCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEec--C---------CCeEEEEeCCCcccceEEeeccccceeEEE
Q 024451 77 TTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS--C---------DSTARLWDTRVASRAVRTFHGHEGDVNTVK 145 (267)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~--~---------d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~ 145 (267)
..+..-....... --..+-..+.|+.....+|+.++ . ..++++.++. +....-.+ ...++|+++.
T Consensus 202 ~~~~~~~~~a~ks--FFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~-g~s~~V~L-~k~GPVhdv~ 277 (566)
T KOG2315|consen 202 PEEGQHQPVANKS--FFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ-GESVSVPL-LKEGPVHDVT 277 (566)
T ss_pred ccccccchhhhcc--ccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec-CceEEEec-CCCCCceEEE
Confidence 6221111000000 01112234556544444443322 2 2356677665 22222222 3578999999
Q ss_pred EecCCCEEEEe--eCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEE-EEe--CCeEEEEeCCcccee
Q 024451 146 FFPDGNRFGTG--SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFA-GYS--NGDCYVWDTLLAKVV 220 (267)
Q Consensus 146 ~~~~~~~l~~~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-g~~--dg~i~i~d~~~~~~~ 220 (267)
|+|+++-|+++ -.=-++.|||++- +.+..+. .++-.++-|+|.|++++. |.. .|.+-+||+...+.+
T Consensus 278 W~~s~~EF~VvyGfMPAkvtifnlr~-~~v~df~-------egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i 349 (566)
T KOG2315|consen 278 WSPSGREFAVVYGFMPAKVTIFNLRG-KPVFDFP-------EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLI 349 (566)
T ss_pred ECCCCCEEEEEEecccceEEEEcCCC-CEeEeCC-------CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhc
Confidence 99999887654 3556899999873 3332221 124578889999998765 443 489999999887766
Q ss_pred eecccccCCccceEEEEEECCCCCeEEEeEC------CCcEEEEecCceE
Q 024451 221 LNLGSLQNSHEGRITCLGLSADGSALCTGSW------DTNLKIWAFGGYR 264 (267)
Q Consensus 221 ~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~------dg~i~~w~~~~~~ 264 (267)
.++. -..-+-.+|+|||+++++++. |+-++||.+.|..
T Consensus 350 ~~~~------a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~ 393 (566)
T KOG2315|consen 350 AKFK------AANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSL 393 (566)
T ss_pred cccc------cCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCce
Confidence 5442 122355899999999998776 7889999998753
No 255
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.25 E-value=1.6e-10 Score=86.62 Aligned_cols=192 Identities=19% Similarity=0.239 Sum_probs=115.4
Q ss_pred CCCeEEEccCCCeEEEeecCCCCCCCCCCcccc-cccCCeeeEEEEEEecCCCeeEEEeeC-----CCeEEEEeCCCCee
Q 024451 8 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSR-MLSGHKGYVSCCQYVPDEDTHLITSSG-----DQTCVLWDITTGLR 81 (267)
Q Consensus 8 ~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~l~s~~~-----d~~v~iwd~~~~~~ 81 (267)
.++.+++++.||.+.+.+.+... .+.+ +-..|.+.-. ..+.... +.+.++.. =+..++|+++...
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~~------~~~~~i~~~~~~~as-~~~~~~~-~~i~s~~~g~~n~~d~~~a~~~~p~~- 170 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKDL------ALMSRIPSIHSGSAS-RKICRHG-NSILSGGCGNWNAQDNFYANTLDPIK- 170 (319)
T ss_pred cCCceEecCCCceEEEEechHHH------hhhhhcccccccccc-cceeecc-cEEecCCcceEeeccceeeecccccc-
Confidence 45679999999999999976411 1111 1111222111 1111112 22222211 1234556654321
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEec-CCCEEEEeeCCC
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDG 160 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~ 160 (267)
.+.... .....+.+++-+|..++++++|+.||.+-+||.+....+...+++|+.+++.+-|+| ++..|.++++||
T Consensus 171 --t~~~~~--~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedG 246 (319)
T KOG4714|consen 171 --TLIPSK--KALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDG 246 (319)
T ss_pred --cccccc--cccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCC
Confidence 111111 122337888888888888999999999999999876666777889999999999999 578899999999
Q ss_pred cEEEEeCCCCeeeEEEEeecCCC---CCCc--------------EEEE-EEccCCCEEEEEEeCCeEEEEe
Q 024451 161 TCRLFDIRTGHQLQVYYQQHGEN---EIPH--------------VTSI-AFSISGRLLFAGYSNGDCYVWD 213 (267)
Q Consensus 161 ~i~iwd~~~~~~~~~~~~~~~~~---~~~~--------------v~~~-~~s~~~~~l~~g~~dg~i~i~d 213 (267)
.+..||-.+ +.+..-.+..... ...+ ..++ .|+.-|..+++|+.-+-|++++
T Consensus 247 slw~wdas~-~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 247 SLWHWDAST-TFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred cEEEEcCCC-ceEEecCccccccccccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEec
Confidence 999999764 2211110000000 0000 1111 3555678888888888888775
No 256
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.24 E-value=5.1e-11 Score=100.99 Aligned_cols=232 Identities=17% Similarity=0.214 Sum_probs=150.1
Q ss_pred EEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCcccc
Q 024451 12 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQS 91 (267)
Q Consensus 12 l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~ 91 (267)
+++.+ .-.--+|++..+... .+...+.||...|+.+.|+|+....+++++.|-.+..||+.+.......- .
T Consensus 85 iVsts-~qkaiiwnlA~ss~~----aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~----~ 155 (1081)
T KOG0309|consen 85 IVSTS-NQKAIIWNLAKSSSN----AIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYST----S 155 (1081)
T ss_pred EEecC-cchhhhhhhhcCCcc----ceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeee----e
Confidence 44433 334558888765432 35567789999999999999888899999999999999998764322110 1
Q ss_pred CCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecC-CCEEEEeeCCCcEEEEeCCCC
Q 024451 92 GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD-GNRFGTGSDDGTCRLFDIRTG 170 (267)
Q Consensus 92 ~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~ 170 (267)
.-......|+|+-.+...+ +.+-...|++||.+.+..+...+++|...|+.++|..- -..+.+++.|++|++||-+..
T Consensus 156 ~w~s~asqVkwnyk~p~vl-asshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kS 234 (1081)
T KOG0309|consen 156 SWRSAASQVKWNYKDPNVL-ASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKS 234 (1081)
T ss_pred cccccCceeeecccCcchh-hhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccc
Confidence 1222345677776555543 44556679999999888889999999999999999763 346788999999999998653
Q ss_pred eeeEEEEeecCCCCCCcEEEEEEccCCC--EEEEEEeCCeEEEEeCCccc----------eeeecccccCCccceEEEEE
Q 024451 171 HQLQVYYQQHGENEIPHVTSIAFSISGR--LLFAGYSNGDCYVWDTLLAK----------VVLNLGSLQNSHEGRITCLG 238 (267)
Q Consensus 171 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~g~~dg~i~i~d~~~~~----------~~~~~~~~~~~~~~~v~~~~ 238 (267)
....... .....++..-++-|=|. ++.---.+..+.+++.+... .+..+ .+|.+.|...-
T Consensus 235 t~e~~~~----vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F----~GH~D~V~eFl 306 (1081)
T KOG0309|consen 235 TTESKRT----VTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTF----VGHDDVVLEFL 306 (1081)
T ss_pred cccccee----ccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeee----cCcchHHHHHh
Confidence 3221111 11223455556666443 22222222355555543321 22222 45766665444
Q ss_pred ECCCC----------CeEEEeECCCcEEEEecC
Q 024451 239 LSADG----------SALCTGSWDTNLKIWAFG 261 (267)
Q Consensus 239 ~~p~~----------~~l~sgs~dg~i~~w~~~ 261 (267)
|-..+ -.|++=|.|.++|+|.++
T Consensus 307 WR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 307 WRKRKECDGDYDSRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred hhhcccccCCCCccceeEEEeecCCceEeeecc
Confidence 43222 268999999999999874
No 257
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.23 E-value=1.6e-09 Score=84.37 Aligned_cols=196 Identities=16% Similarity=0.245 Sum_probs=129.0
Q ss_pred eeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeE
Q 024451 3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT 82 (267)
Q Consensus 3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 82 (267)
..+.++...|+.+-..|++.-+.+... -..+...+....|..+|+.+-|+-.. +++++.+.|..+.---.+.+...
T Consensus 74 ~~y~~e~~~L~vg~~ngtvtefs~sed---fnkm~~~r~~~~h~~~v~~~if~~~~-e~V~s~~~dk~~~~hc~e~~~~l 149 (404)
T KOG1409|consen 74 MEYVSESRRLYVGQDNGTVTEFALSED---FNKMTFLKDYLAHQARVSAIVFSLTH-EWVLSTGKDKQFAWHCTESGNRL 149 (404)
T ss_pred eeeeccceEEEEEEecceEEEEEhhhh---hhhcchhhhhhhhhcceeeEEecCCc-eeEEEeccccceEEEeeccCCcc
Confidence 457788889999999999999887652 22344567788999999999997643 58999999988764444443322
Q ss_pred EEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCC-cccceEEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451 83 SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRV-ASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT 161 (267)
Q Consensus 83 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 161 (267)
.-+... .........+ . ....|...|.|.+-.+.. .-.++..+.+|.+.+.++.|.|....+.+|..|..
T Consensus 150 g~Y~~~--~~~t~~~~d~----~---~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~ 220 (404)
T KOG1409|consen 150 GGYNFE--TPASALQFDA----L---YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHS 220 (404)
T ss_pred cceEee--ccCCCCceee----E---EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCc
Confidence 211100 0000000000 0 112333344444333221 23467788899999999999999999999999999
Q ss_pred EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCC
Q 024451 162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL 215 (267)
Q Consensus 162 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~ 215 (267)
+.+||+--.+-.....+. +...|..++..+.-+.+++...||.|-+||+.
T Consensus 221 vi~wdigg~~g~~~el~g----h~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 221 VIMWDIGGRKGTAYELQG----HNDKVQALSYAQHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred eEEEeccCCcceeeeecc----chhhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence 999998654433322221 22347777777777889999999999999973
No 258
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.21 E-value=1.2e-10 Score=96.14 Aligned_cols=161 Identities=17% Similarity=0.301 Sum_probs=111.7
Q ss_pred CCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCC
Q 024451 8 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGG 87 (267)
Q Consensus 8 ~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 87 (267)
+.+.+++++.|++|++|.+.......+...+..++..|+.+|+.+.|..+. +++ ++.|+-|.+||.--+........
T Consensus 746 NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~l-r~i--~ScD~giHlWDPFigr~Laq~~d 822 (1034)
T KOG4190|consen 746 NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADL-RSI--ASCDGGIHLWDPFIGRLLAQMED 822 (1034)
T ss_pred cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeecc-cee--eeccCcceeecccccchhHhhhc
Confidence 346689999999999999987554444455777899999999999998754 455 45688999999865544332211
Q ss_pred ccccCCccceEEEEEeCC-CCeEEEEe-cCCCeEEEEeCCCcccc--eEEe--eccccceeEEEEecCCCEEEEeeCCCc
Q 024451 88 EFQSGHTADVLSVSISGS-NSRMFVSG-SCDSTARLWDTRVASRA--VRTF--HGHEGDVNTVKFFPDGNRFGTGSDDGT 161 (267)
Q Consensus 88 ~~~~~~~~~i~~~~~~~~-~~~~~~s~-~~d~~i~iwd~~~~~~~--~~~~--~~~~~~i~~~~~~~~~~~l~~~~~d~~ 161 (267)
. ...+....+...++ +..+++.+ +...+|+++|.+..... .+.- .+.+..+.+++..+.|+.++.+-..|+
T Consensus 823 a---pk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGc 899 (1034)
T KOG4190|consen 823 A---PKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGC 899 (1034)
T ss_pred C---cccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCc
Confidence 1 11222223333333 33444444 67889999998754321 1111 244566889999999999999999999
Q ss_pred EEEEeCCCCeeeE
Q 024451 162 CRLFDIRTGHQLQ 174 (267)
Q Consensus 162 i~iwd~~~~~~~~ 174 (267)
|-+.|.++++.+.
T Consensus 900 i~~LDaR~G~vIN 912 (1034)
T KOG4190|consen 900 IAILDARNGKVIN 912 (1034)
T ss_pred EEEEecCCCceec
Confidence 9999999988654
No 259
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.21 E-value=3.9e-11 Score=98.86 Aligned_cols=207 Identities=21% Similarity=0.325 Sum_probs=132.6
Q ss_pred cccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCe-----eEEEeCCccccCCccceEEEEEeCCCCeEEEEe
Q 024451 39 SRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGL-----RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSG 113 (267)
Q Consensus 39 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~ 113 (267)
...+.||...|..+.... +++-+++++.|++|++|.+.... ..+.+ ..+.|+.+|.++-+... .+.+ +
T Consensus 728 L~nf~GH~~~iRai~Aid-NENSFiSASkDKTVKLWSik~EgD~~~tsaCQf---TY~aHkk~i~~igfL~~-lr~i--~ 800 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAID-NENSFISASKDKTVKLWSIKPEGDEIGTSACQF---TYQAHKKPIHDIGFLAD-LRSI--A 800 (1034)
T ss_pred eecccCcHHHhHHHHhcc-cccceeeccCCceEEEEEeccccCccccceeee---EhhhccCcccceeeeec-ccee--e
Confidence 345779998888876654 34568999999999999986431 11111 12469999999988754 3443 5
Q ss_pred cCCCeEEEEeCCCcccceEEe-e----ccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcE
Q 024451 114 SCDSTARLWDTRVASRAVRTF-H----GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHV 188 (267)
Q Consensus 114 ~~d~~i~iwd~~~~~~~~~~~-~----~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v 188 (267)
+.||.|.+||.-.++ +..++ . +-.+.|.|+.--...-.++.++...+|+++|.+...-.-.+..........-+
T Consensus 801 ScD~giHlWDPFigr-~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~ 879 (1034)
T KOG4190|consen 801 SCDGGIHLWDPFIGR-LLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALT 879 (1034)
T ss_pred eccCcceeecccccc-hhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchhe
Confidence 778999999975433 22222 1 11223444432111123344467889999999887544333333223333457
Q ss_pred EEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEE-E
Q 024451 189 TSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKI-W 258 (267)
Q Consensus 189 ~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~-w 258 (267)
.+++..+.|++++++-++|.+.+.|.++++.+.....+ +-.+..++ .|..+.|+....|.++.+ |
T Consensus 880 R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpm----ecdllqla-apsdq~L~~saldHslaVnW 945 (1034)
T KOG4190|consen 880 RAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPM----ECDLLQLA-APSDQALAQSALDHSLAVNW 945 (1034)
T ss_pred eEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcc----cchhhhhc-CchhHHHHhhcccceeEeee
Confidence 88999999999999999999999999999877654321 11222222 255666666666777766 6
No 260
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.21 E-value=2.4e-08 Score=82.94 Aligned_cols=193 Identities=17% Similarity=0.235 Sum_probs=136.8
Q ss_pred CCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEE------ec-------------CCCeeEEEee
Q 024451 6 SPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQY------VP-------------DEDTHLITSS 66 (267)
Q Consensus 6 ~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~------~~-------------~~~~~l~s~~ 66 (267)
.|.+.++|....||-+|+|+...+.......|.. .+. +..++..| +| .+...++-|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~-~~s---~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt 77 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIA-SLS---GTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGT 77 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccch-hcc---CcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeec
Confidence 4667899999999999999987654322222221 111 12222222 12 1234677788
Q ss_pred CCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEE
Q 024451 67 GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKF 146 (267)
Q Consensus 67 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~ 146 (267)
..|.|.+|+...++-...+.. ..|.+.++++..+. ....+-+++.|+.+..|+... ...++..++-...+.++..
T Consensus 78 ~~g~v~~ys~~~g~it~~~st---~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~-~~~~~~~~~~~~~~~sl~i 152 (541)
T KOG4547|consen 78 PQGSVLLYSVAGGEITAKLST---DKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKE-KVIIRIWKEQKPLVSSLCI 152 (541)
T ss_pred CCccEEEEEecCCeEEEEEec---CCCCCcceeeeccc-ccCceEecCCceeEEEEeccc-ceeeeeeccCCCccceEEE
Confidence 899999999988865555432 46888888887664 345677999999999999863 4567777777778999999
Q ss_pred ecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccC-----CCEEEEEE-eCCeEEEEeC
Q 024451 147 FPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS-----GRLLFAGY-SNGDCYVWDT 214 (267)
Q Consensus 147 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~~g~-~dg~i~i~d~ 214 (267)
+||++.+++++ ++|++||+++.+.+..|. ++..+|+++.|... |.+++++. .+..+.+|-.
T Consensus 153 s~D~~~l~~as--~~ik~~~~~~kevv~~ft-----gh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v 219 (541)
T KOG4547|consen 153 SPDGKILLTAS--RQIKVLDIETKEVVITFT-----GHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVV 219 (541)
T ss_pred cCCCCEEEecc--ceEEEEEccCceEEEEec-----CCCcceEEEEEEEeccccccceeeeccccccceeEEEE
Confidence 99999999887 499999999987766553 34457999998766 66666654 4566777754
No 261
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.21 E-value=9.4e-10 Score=90.94 Aligned_cols=188 Identities=13% Similarity=0.205 Sum_probs=127.8
Q ss_pred EEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccc-
Q 024451 12 VACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQ- 90 (267)
Q Consensus 12 l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~- 90 (267)
|.+++....|.-.+++... ....+.-..+.+++|..++.. .+|++|+.||.|..||..+......+.....
T Consensus 148 ly~~gsg~evYRlNLEqGr-------fL~P~~~~~~~lN~v~in~~h-gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v 219 (703)
T KOG2321|consen 148 LYLVGSGSEVYRLNLEQGR-------FLNPFETDSGELNVVSINEEH-GLLACGTEDGVVEFWDPRDKSRVGTLDAASSV 219 (703)
T ss_pred EEEeecCcceEEEEccccc-------cccccccccccceeeeecCcc-ceEEecccCceEEEecchhhhhheeeeccccc
Confidence 3444444456666765421 233344455789999999865 5788899999999999987665554432211
Q ss_pred cCC-----ccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecC--CCEEEEeeCCCcEE
Q 024451 91 SGH-----TADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD--GNRFGTGSDDGTCR 163 (267)
Q Consensus 91 ~~~-----~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~ 163 (267)
..| ...|+++.|.. ++-.++.|..+|.+.|||++........-++..-+|..+.|.+. ++.+++ .....++
T Consensus 220 ~s~pg~~~~~svTal~F~d-~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S-~Dk~~~k 297 (703)
T KOG2321|consen 220 NSHPGGDAAPSVTALKFRD-DGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVS-MDKRILK 297 (703)
T ss_pred CCCccccccCcceEEEecC-CceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEe-cchHHhh
Confidence 112 33488999984 36678999999999999998644322222233457889999775 344554 3456899
Q ss_pred EEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCC
Q 024451 164 LFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL 215 (267)
Q Consensus 164 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~ 215 (267)
|||-.+++.....-. ...+..+|+-|++..++++-.++.+..|=+.
T Consensus 298 iWd~~~Gk~~asiEp------t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 298 IWDECTGKPMASIEP------TSDLNDFCFVPGSGMFFTANESSKMHTYYIP 343 (703)
T ss_pred hcccccCCceeeccc------cCCcCceeeecCCceEEEecCCCcceeEEcc
Confidence 999999887654321 1247889999999999999888877776543
No 262
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.21 E-value=1.1e-09 Score=92.90 Aligned_cols=238 Identities=16% Similarity=0.170 Sum_probs=151.8
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCC---C-----CCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEE
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKD---G-----NLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVL 73 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~---~-----~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~i 73 (267)
|.+|+....++++||.||.+++-.+...+..- + .+..-.++.||+..|.-+.|+... +.|-+...+|-|.+
T Consensus 19 c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~-QKLTtSDt~GlIiV 97 (1189)
T KOG2041|consen 19 CAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENN-QKLTTSDTSGLIIV 97 (1189)
T ss_pred EEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccc-ccccccCCCceEEE
Confidence 56799999999999999999999887643211 1 122346789999999999998654 56888899999999
Q ss_pred EeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEE
Q 024451 74 WDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRF 153 (267)
Q Consensus 74 wd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 153 (267)
|-+-.+.-.... ..+...+.|.+++|...+ ..+...-.||.|.+=.+...+---+.++ ..-...+.|++|.+.+
T Consensus 98 WmlykgsW~EEM---iNnRnKSvV~SmsWn~dG-~kIcIvYeDGavIVGsvdGNRIwgKeLk--g~~l~hv~ws~D~~~~ 171 (1189)
T KOG2041|consen 98 WMLYKGSWCEEM---INNRNKSVVVSMSWNLDG-TKICIVYEDGAVIVGSVDGNRIWGKELK--GQLLAHVLWSEDLEQA 171 (1189)
T ss_pred EeeecccHHHHH---hhCcCccEEEEEEEcCCC-cEEEEEEccCCEEEEeeccceecchhcc--hheccceeecccHHHH
Confidence 987655321111 112345567888888644 4456666777766555432111011111 1123467899998888
Q ss_pred EEeeCCCcEEEEeCCCCeee-------EEEEeecCCCCCCcEEEEEE--------ccCCCEEEEEEeCCeEEEEeCCccc
Q 024451 154 GTGSDDGTCRLFDIRTGHQL-------QVYYQQHGENEIPHVTSIAF--------SISGRLLFAGYSNGDCYVWDTLLAK 218 (267)
Q Consensus 154 ~~~~~d~~i~iwd~~~~~~~-------~~~~~~~~~~~~~~v~~~~~--------s~~~~~l~~g~~dg~i~i~d~~~~~ 218 (267)
..+-..|.+.++|-...-.+ ...... ..+....+..++| -|+...++.++.+|.+.|-.-....
T Consensus 172 Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~-~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~ 250 (1189)
T KOG2041|consen 172 LFKKANGETHLYDNQGNFERKLEKDCEVNGTGI-FSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDP 250 (1189)
T ss_pred HhhhcCCcEEEecccccHHHhhhhceEEeeeee-ecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCC
Confidence 88888899999997543111 111110 0111123455555 2578899999999988765432222
Q ss_pred eeeecccccCCccceEEEEEECCCCCeEEEeECC
Q 024451 219 VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD 252 (267)
Q Consensus 219 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d 252 (267)
.+.-+ ...-.+..+.|+|+|..||.++.|
T Consensus 251 ~Pvv~-----dtgm~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 251 EPVVV-----DTGMKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred CCeEE-----ecccEeecceecCCCcEEEEccCc
Confidence 11111 122468889999999999998875
No 263
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.20 E-value=1.4e-07 Score=77.70 Aligned_cols=234 Identities=13% Similarity=0.154 Sum_probs=133.3
Q ss_pred CeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeC----CCeEEEEeCCCC-eeEEEeCCccccCC
Q 024451 19 SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG----DQTCVLWDITTG-LRTSVFGGEFQSGH 93 (267)
Q Consensus 19 ~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~----d~~v~iwd~~~~-~~~~~~~~~~~~~~ 93 (267)
+.|.+|+++..+ +.+........ ......+.++|++. +|.+..+ ++.|..|++... .....+..... .
T Consensus 13 ~gI~~~~~d~~~---g~l~~~~~~~~-~~~Ps~l~~~~~~~-~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~--~ 85 (345)
T PF10282_consen 13 GGIYVFRFDEET---GTLTLVQTVAE-GENPSWLAVSPDGR-RLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPS--G 85 (345)
T ss_dssp TEEEEEEEETTT---TEEEEEEEEEE-SSSECCEEE-TTSS-EEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEE--S
T ss_pred CcEEEEEEcCCC---CCceEeeeecC-CCCCceEEEEeCCC-EEEEEEccccCCCCEEEEEECCCcceeEEeeeecc--C
Confidence 789999985422 22222222211 12223467788764 5666555 578999988753 12222211110 1
Q ss_pred ccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEE--eec-----------cccceeEEEEecCCCEEEEee-CC
Q 024451 94 TADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRT--FHG-----------HEGDVNTVKFFPDGNRFGTGS-DD 159 (267)
Q Consensus 94 ~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~--~~~-----------~~~~i~~~~~~~~~~~l~~~~-~d 159 (267)
......+++++....++++...+|.+.++++......... ... .....+++.++|+++++++.. ..
T Consensus 86 g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~ 165 (345)
T PF10282_consen 86 GSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGA 165 (345)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTT
T ss_pred CCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCC
Confidence 2234567788766656666667999999998753322111 111 123468999999999887653 34
Q ss_pred CcEEEEeCCCCee-eEEEEeecCCCCCCcEEEEEEccCCCEEEEEE-eCCeEEEEeCC--cc--ceeeecccccCCc--c
Q 024451 160 GTCRLFDIRTGHQ-LQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTL--LA--KVVLNLGSLQNSH--E 231 (267)
Q Consensus 160 ~~i~iwd~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~-~dg~i~i~d~~--~~--~~~~~~~~~~~~~--~ 231 (267)
..|.+|+++.... +....... .........+.|+|+++++.+.. .++.|.+|+.. .+ +.......++... .
T Consensus 166 D~v~~~~~~~~~~~l~~~~~~~-~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~ 244 (345)
T PF10282_consen 166 DRVYVYDIDDDTGKLTPVDSIK-VPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGE 244 (345)
T ss_dssp TEEEEEEE-TTS-TEEEEEEEE-CSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSS
T ss_pred CEEEEEEEeCCCceEEEeeccc-cccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccccccc
Confidence 4899999976542 21111111 11223578999999999887665 46889999876 22 1222222221111 2
Q ss_pred ceEEEEEECCCCCeEEEeEC-CCcEEEEec
Q 024451 232 GRITCLGLSADGSALCTGSW-DTNLKIWAF 260 (267)
Q Consensus 232 ~~v~~~~~~p~~~~l~sgs~-dg~i~~w~~ 260 (267)
.....++++|||++|.++.. ++.|.+|++
T Consensus 245 ~~~~~i~ispdg~~lyvsnr~~~sI~vf~~ 274 (345)
T PF10282_consen 245 NAPAEIAISPDGRFLYVSNRGSNSISVFDL 274 (345)
T ss_dssp SSEEEEEE-TTSSEEEEEECTTTEEEEEEE
T ss_pred CCceeEEEecCCCEEEEEeccCCEEEEEEE
Confidence 25778999999999876554 678999998
No 264
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.20 E-value=1.3e-09 Score=84.78 Aligned_cols=219 Identities=17% Similarity=0.240 Sum_probs=150.2
Q ss_pred cccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeC-CCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecC
Q 024451 37 PVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI-TTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC 115 (267)
Q Consensus 37 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~ 115 (267)
.+.+.++||.+.|+.....|.++ -+++.+.|.++|+|-- ++++.-..+. ..-...+.++.+.+ ..+.+..+-.
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~-gv~~~s~drtvrv~lkrds~q~wpsI~----~~mP~~~~~~~y~~-e~~~L~vg~~ 88 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEE-GVISVSEDRTVRVWLKRDSGQYWPSIY----HYMPSPCSAMEYVS-ESRRLYVGQD 88 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCC-CeEEccccceeeeEEeccccccCchhh----hhCCCCceEeeeec-cceEEEEEEe
Confidence 35667899999999988888654 5899999999999943 2332111110 11233456666664 4566777888
Q ss_pred CCeEEEEeCCCc---ccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEe--------------
Q 024451 116 DSTARLWDTRVA---SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQ-------------- 178 (267)
Q Consensus 116 d~~i~iwd~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-------------- 178 (267)
.|++.-+.+... ....+....|...+..+.|+.....+++.+.|+.+.---.+.++.+..+.-
T Consensus 89 ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~ 168 (404)
T KOG1409|consen 89 NGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYA 168 (404)
T ss_pred cceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEE
Confidence 888887765321 123455668889999999988888888888887765322333221111000
Q ss_pred ----------------------ecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEE
Q 024451 179 ----------------------QHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITC 236 (267)
Q Consensus 179 ----------------------~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~ 236 (267)
.....+..++.+++|.+....+++|.+|..+.+||+-..+...-. ...|...|..
T Consensus 169 fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~e---l~gh~~kV~~ 245 (404)
T KOG1409|consen 169 FVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYE---LQGHNDKVQA 245 (404)
T ss_pred EecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeee---eccchhhhhh
Confidence 001224457889999999999999999999999997654433211 2468888888
Q ss_pred EEECCCCCeEEEeECCCcEEEEecCceE
Q 024451 237 LGLSADGSALCTGSWDTNLKIWAFGGYR 264 (267)
Q Consensus 237 ~~~~p~~~~l~sgs~dg~i~~w~~~~~~ 264 (267)
+..-+.-+.|.+++.||.|-+|+++--+
T Consensus 246 l~~~~~t~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 246 LSYAQHTRQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred hhhhhhheeeeeccCCCeEEEEecccee
Confidence 8888888899999999999999986543
No 265
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.19 E-value=1.3e-08 Score=76.86 Aligned_cols=242 Identities=15% Similarity=0.058 Sum_probs=147.0
Q ss_pred CCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCc
Q 024451 9 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE 88 (267)
Q Consensus 9 g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~ 88 (267)
..+|+.||.-|...+|.....+. ....-..|+..|.-+.=.-+....+..++.|.++++.+++-+......
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~------h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~--- 154 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDG------HLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAV--- 154 (344)
T ss_pred ccEEEeccccceeeeecccCccc------ceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccccee---
Confidence 35689999999999999875321 111112233333222111122234667888999998888654322211
Q ss_pred cccCCcc--ceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccc-eEEee-ccccceeEEEEecCCCEEEEeeCCCcEEE
Q 024451 89 FQSGHTA--DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA-VRTFH-GHEGDVNTVKFFPDGNRFGTGSDDGTCRL 164 (267)
Q Consensus 89 ~~~~~~~--~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~-~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~i 164 (267)
|.. ..+++.+++ +.++.++.+....|-.|.+...... .+... .-.+.-.+..|+.....||++.+||++.|
T Consensus 155 ----h~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I 229 (344)
T KOG4532|consen 155 ----HNQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAI 229 (344)
T ss_pred ----eccccceeeeEEcC-CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEE
Confidence 222 266777875 5677788888888888887654332 22222 22334568889988899999999999999
Q ss_pred EeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCC--EEEEEEeCCeEEEEeCCccceeeecc---cccCCccc-eEEEEE
Q 024451 165 FDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR--LLFAGYSNGDCYVWDTLLAKVVLNLG---SLQNSHEG-RITCLG 238 (267)
Q Consensus 165 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~g~~dg~i~i~d~~~~~~~~~~~---~~~~~~~~-~v~~~~ 238 (267)
||++.............+.+.+.+..+.|++-|. .|+-.-.=+.+++.|++..+....+. .....|.. .|....
T Consensus 230 ~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~ 309 (344)
T KOG4532|consen 230 YDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTN 309 (344)
T ss_pred EEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCcccccccccccccccc
Confidence 9998755443333333344667899999998664 45555455789999988765433221 11123433 378888
Q ss_pred ECCCCCeEEEeECCCcEEEEecCceEe
Q 024451 239 LSADGSALCTGSWDTNLKIWAFGGYRR 265 (267)
Q Consensus 239 ~~p~~~~l~sgs~dg~i~~w~~~~~~~ 265 (267)
|+.++.-..+.+.+ .+.=|.+...+|
T Consensus 310 f~~~n~s~~v~~e~-~~ae~ni~srsR 335 (344)
T KOG4532|consen 310 FNNENESNDVKNEL-QGAEYNILSRSR 335 (344)
T ss_pred ccCCCcccccccch-hhheeeccccce
Confidence 88776665554443 344454444444
No 266
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.19 E-value=4.4e-08 Score=82.72 Aligned_cols=202 Identities=12% Similarity=0.091 Sum_probs=114.5
Q ss_pred CeeeEEEEEEecCCCe--eEEEeeCCC--eEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCC---
Q 024451 45 HKGYVSCCQYVPDEDT--HLITSSGDQ--TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS--- 117 (267)
Q Consensus 45 h~~~v~~~~~~~~~~~--~l~s~~~d~--~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~--- 117 (267)
....+.+=+|+|++.. ++++...++ .|.+.++.++....+.. .........|+|.+.+++.+...+|
T Consensus 183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~------~~g~~~~p~wSPDG~~Laf~s~~~g~~d 256 (428)
T PRK01029 183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA------LQGNQLMPTFSPRKKLLAFISDRYGNPD 256 (428)
T ss_pred CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeec------CCCCccceEECCCCCEEEEEECCCCCcc
Confidence 3444566789998764 333444443 47777888775444321 1222335678876555555443333
Q ss_pred -eEEEEeCCCc--ccceEEeeccccceeEEEEecCCCEEEEee-CCCcEEEEeC--CC-CeeeEEEEeecCCCCCCcEEE
Q 024451 118 -TARLWDTRVA--SRAVRTFHGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDI--RT-GHQLQVYYQQHGENEIPHVTS 190 (267)
Q Consensus 118 -~i~iwd~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~--~~-~~~~~~~~~~~~~~~~~~v~~ 190 (267)
.+..|++... .........+........|+|+|+.|+..+ .++...+|.. .. +.....+.. ....+..
T Consensus 257 i~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~-----~~~~~~~ 331 (428)
T PRK01029 257 LFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTK-----KYRNSSC 331 (428)
T ss_pred eeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEecc-----CCCCccc
Confidence 3444665431 122222322223446789999999887665 4666666643 32 121222211 1123567
Q ss_pred EEEccCCCEEEEEEeC---CeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeEC-C--CcEEEEecCc
Q 024451 191 IAFSISGRLLFAGYSN---GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW-D--TNLKIWAFGG 262 (267)
Q Consensus 191 ~~~s~~~~~l~~g~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~-d--g~i~~w~~~~ 262 (267)
..|||+|+.|+....+ ..|++||+..++...-. .....+....|+|||+.|+..+. + ..|.++++.+
T Consensus 332 p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt-----~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~ 404 (428)
T PRK01029 332 PAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLT-----TSPENKESPSWAIDSLHLVYSAGNSNESELYLISLIT 404 (428)
T ss_pred eeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEcc-----CCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 7899999988776543 47999998776543211 12234567899999998875433 3 3466666643
No 267
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.13 E-value=4.2e-09 Score=81.23 Aligned_cols=253 Identities=19% Similarity=0.340 Sum_probs=154.3
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCe------------eeEEEEEEe-cCCCeeEEEeeCC
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHK------------GYVSCCQYV-PDEDTHLITSSGD 68 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~------------~~v~~~~~~-~~~~~~l~s~~~d 68 (267)
+..|...|.+|+||...|.|.+|...... .-+.+....+++|. -.|..+.|. +.+...++..+.|
T Consensus 31 aVefd~tg~YlatGDkgGRVvlfer~~s~--~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNd 108 (460)
T COG5170 31 AVEFDETGLYLATGDKGGRVVLFEREKSY--GCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTND 108 (460)
T ss_pred EEEeccccceEeecCCCceEEEeeccccc--ccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCC
Confidence 35688899999999999999999754321 11111222344443 235566665 3444567778899
Q ss_pred CeEEEEeCCCCeeEE-------------------------------------EeCCc-cccCCccceEEEEEeCCCCeEE
Q 024451 69 QTCVLWDITTGLRTS-------------------------------------VFGGE-FQSGHTADVLSVSISGSNSRMF 110 (267)
Q Consensus 69 ~~v~iwd~~~~~~~~-------------------------------------~~~~~-~~~~~~~~i~~~~~~~~~~~~~ 110 (267)
++|++|.+....... ..+.+ ..+.|.--++++.+.. +...+
T Consensus 109 ktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns-D~et~ 187 (460)
T COG5170 109 KTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS-DKETL 187 (460)
T ss_pred ceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC-chhee
Confidence 999999875321000 00000 1246777788888874 34444
Q ss_pred EEecCCCeEEEEeCCCcccc--eEEeeccc-----cceeEEEEecC-CCEEEEeeCCCcEEEEeCCCCeeeEE---EEee
Q 024451 111 VSGSCDSTARLWDTRVASRA--VRTFHGHE-----GDVNTVKFFPD-GNRFGTGSDDGTCRLFDIRTGHQLQV---YYQQ 179 (267)
Q Consensus 111 ~s~~~d~~i~iwd~~~~~~~--~~~~~~~~-----~~i~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~---~~~~ 179 (267)
+ .+.|-.|.+|++...... +..++.|+ .-|++..|+|. .++|.-.+..|.|++-|++....-.. ++..
T Consensus 188 l-SaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~ 266 (460)
T COG5170 188 L-SADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFEL 266 (460)
T ss_pred e-eccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhh
Confidence 4 456778999987643322 23334443 23789999995 57777778899999999984321100 0000
Q ss_pred --cC------CCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccC---------CccceE---EEEEE
Q 024451 180 --HG------ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQN---------SHEGRI---TCLGL 239 (267)
Q Consensus 180 --~~------~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~---------~~~~~v---~~~~~ 239 (267)
.+ ..-...|+.+.|+++|+++++-.. -.+++||+...+.+.....++. .-.+.| ..+.|
T Consensus 267 ~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisf 345 (460)
T COG5170 267 TIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISF 345 (460)
T ss_pred ccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEe
Confidence 00 001234788999999999998643 4799999865443322110100 112222 45788
Q ss_pred CCCCCeEEEeECCCcEEEEe
Q 024451 240 SADGSALCTGSWDTNLKIWA 259 (267)
Q Consensus 240 ~p~~~~l~sgs~dg~i~~w~ 259 (267)
|-|.+.+++||.....-+|.
T Consensus 346 Sgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 346 SGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred cCCcccccccccccceeeec
Confidence 88899999999988777775
No 268
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.11 E-value=1.9e-09 Score=85.45 Aligned_cols=161 Identities=18% Similarity=0.214 Sum_probs=107.1
Q ss_pred eeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEE
Q 024451 4 AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS 83 (267)
Q Consensus 4 ~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~ 83 (267)
.++|++++++++..+....++++....+ ..+.-....+......+..+...... ...-.++....+.+|....+....
T Consensus 69 ~~s~~~~llAv~~~~K~~~~f~~~~~~~-~~kl~~~~~v~~~~~ai~~~~~~~sv-~v~dkagD~~~~di~s~~~~~~~~ 146 (390)
T KOG3914|consen 69 LTSDSGRLVAVATSSKQRAVFDYRENPK-GAKLLDVSCVPKRPTAISFIREDTSV-LVADKAGDVYSFDILSADSGRCEP 146 (390)
T ss_pred ccCCCceEEEEEeCCCceEEEEEecCCC-cceeeeEeecccCcceeeeeeccceE-EEEeecCCceeeeeecccccCcch
Confidence 3678999999999999988888765332 11111111222222333333332211 112234556677788776544333
Q ss_pred EeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEE-eeccccceeEEEEecCCCEEEEeeCCCcE
Q 024451 84 VFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRT-FHGHEGDVNTVKFFPDGNRFGTGSDDGTC 162 (267)
Q Consensus 84 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d~~i 162 (267)
..||...+..|.+++ ++++++++..|..||+-..... ..+.. ..||..-|..++.-++ ..|+++|.|+++
T Consensus 147 ------~lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~-f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tl 217 (390)
T KOG3914|consen 147 ------ILGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPAT-FVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTL 217 (390)
T ss_pred ------hhhhhhhhheeeecC-CCCEEEEecCCceEEEEecCcc-cchhhhccccHhheeeeeeccC-ceeeecCCCCcE
Confidence 357999999999996 4588999999999998765432 23333 3589999999998754 568999999999
Q ss_pred EEEeCCCCeeeEE
Q 024451 163 RLFDIRTGHQLQV 175 (267)
Q Consensus 163 ~iwd~~~~~~~~~ 175 (267)
++||+++++++..
T Consensus 218 r~Wd~~sgk~L~t 230 (390)
T KOG3914|consen 218 RLWDITSGKLLDT 230 (390)
T ss_pred EEEecccCCcccc
Confidence 9999999987643
No 269
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.05 E-value=1.2e-06 Score=71.23 Aligned_cols=242 Identities=11% Similarity=0.101 Sum_probs=131.6
Q ss_pred eCCCCCeEEEccC----------CCeEEEeecCCCCCCCCCCcc--cccccCCeeeEEEEEEecCCCeeEEEee-C-CCe
Q 024451 5 FSPTGQSVACGGL----------DSVCSIFNLNSPTDKDGNLPV--SRMLSGHKGYVSCCQYVPDEDTHLITSS-G-DQT 70 (267)
Q Consensus 5 ~~~~g~~l~~~~~----------d~~v~~w~~~~~~~~~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~l~s~~-~-d~~ 70 (267)
++|||+.|..+.. +..|.+||...... ..+.+. ...+. ....-..++++|++. +|+... . +..
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~-~~~i~~p~~p~~~-~~~~~~~~~ls~dgk-~l~V~n~~p~~~ 129 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP-IADIELPEGPRFL-VGTYPWMTSLTPDNK-TLLFYQFSPSPA 129 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE-EeEEccCCCchhh-ccCccceEEECCCCC-EEEEecCCCCCE
Confidence 7899977766665 78999999876321 111111 00000 011223567788775 455443 3 789
Q ss_pred EEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccce----EEeecccccee-EEE
Q 024451 71 CVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV----RTFHGHEGDVN-TVK 145 (267)
Q Consensus 71 v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~----~~~~~~~~~i~-~~~ 145 (267)
|-+.|+.+++.+..+.. +....+. ..+ +... ..-+.||...........+.. ..+.+....+. .-.
T Consensus 130 V~VvD~~~~kvv~ei~v----p~~~~vy---~t~-e~~~-~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~ 200 (352)
T TIGR02658 130 VGVVDLEGKAFVRMMDV----PDCYHIF---PTA-NDTF-FMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPA 200 (352)
T ss_pred EEEEECCCCcEEEEEeC----CCCcEEE---Eec-CCcc-EEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCc
Confidence 99999999876665532 1111111 111 1111 122334443332222111100 11111011110 013
Q ss_pred Eec-CCCEEEEeeCCCcEEEEeCCCCee-----eEEEEeecC--CCCCCcEEEEEEccCCCEEEEEE----------eCC
Q 024451 146 FFP-DGNRFGTGSDDGTCRLFDIRTGHQ-----LQVYYQQHG--ENEIPHVTSIAFSISGRLLFAGY----------SNG 207 (267)
Q Consensus 146 ~~~-~~~~l~~~~~d~~i~iwd~~~~~~-----~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~g~----------~dg 207 (267)
|.+ +++++....+ |+|.+.|+..... ...+..... .-.......++++++++.+++.. ..+
T Consensus 201 ~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~ 279 (352)
T TIGR02658 201 YSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASR 279 (352)
T ss_pred eEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCC
Confidence 455 7877776666 9999999644321 111111000 00122344589999999887742 125
Q ss_pred eEEEEeCCccceeeecccccCCccceEEEEEECCCCC-eEEEeE-CCCcEEEEecCceE
Q 024451 208 DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS-ALCTGS-WDTNLKIWAFGGYR 264 (267)
Q Consensus 208 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~sgs-~dg~i~~w~~~~~~ 264 (267)
.|.++|..+.+.+..+. -...+..++++||++ .|.+.. .++.|.+.|...++
T Consensus 280 ~V~ViD~~t~kvi~~i~-----vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k 333 (352)
T TIGR02658 280 FLFVVDAKTGKRLRKIE-----LGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGK 333 (352)
T ss_pred EEEEEECCCCeEEEEEe-----CCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCe
Confidence 89999999888776542 234788999999999 777555 57889999976554
No 270
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.05 E-value=3.1e-07 Score=85.41 Aligned_cols=215 Identities=16% Similarity=0.181 Sum_probs=129.8
Q ss_pred eeeCCCCCeE-EEccCCCeEEEeecCCCCCCC--CCCcccccccCC-------eeeEEEEEEecCCCeeEEEeeCCCeEE
Q 024451 3 CAFSPTGQSV-ACGGLDSVCSIFNLNSPTDKD--GNLPVSRMLSGH-------KGYVSCCQYVPDEDTHLITSSGDQTCV 72 (267)
Q Consensus 3 ~~~~~~g~~l-~~~~~d~~v~~w~~~~~~~~~--~~~~~~~~~~~h-------~~~v~~~~~~~~~~~~l~s~~~d~~v~ 72 (267)
++++++++.| ++-...+.|+++|.....-.. +.........+. -..-+.++++|+++.++++.+.++.|+
T Consensus 629 Iavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~ 708 (1057)
T PLN02919 629 LAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIW 708 (1057)
T ss_pred EEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEE
Confidence 5677777654 444455778888864321000 000000000000 012246888886666777778889999
Q ss_pred EEeCCCCeeEEEeCCcc----ccCC------ccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceE----------
Q 024451 73 LWDITTGLRTSVFGGEF----QSGH------TADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVR---------- 132 (267)
Q Consensus 73 iwd~~~~~~~~~~~~~~----~~~~------~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~---------- 132 (267)
+||..++.... +.+.. ..++ -.....+++++.+..++++...++.|++||+........
T Consensus 709 v~d~~~g~v~~-~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~ 787 (1057)
T PLN02919 709 EYNISDGVTRV-FSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDN 787 (1057)
T ss_pred EEECCCCeEEE-EecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcc
Confidence 99998764322 21110 0011 123456888876666888888889999999864321110
Q ss_pred --Eeecc--------ccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecC---------CCCCCcEEEEEE
Q 024451 133 --TFHGH--------EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG---------ENEIPHVTSIAF 193 (267)
Q Consensus 133 --~~~~~--------~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~---------~~~~~~v~~~~~ 193 (267)
.+..+ -..-..++++++|+.+++-..++.|++||..++...... .... .........+++
T Consensus 788 l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tia-G~G~~G~~dG~~~~a~l~~P~GIav 866 (1057)
T PLN02919 788 LFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLA-GTGKAGFKDGKALKAQLSEPAGLAL 866 (1057)
T ss_pred cccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEe-ccCCcCCCCCcccccccCCceEEEE
Confidence 00000 011357889999999999999999999999876543322 1100 011124678999
Q ss_pred ccCCCEEEEEEeCCeEEEEeCCccce
Q 024451 194 SISGRLLFAGYSNGDCYVWDTLLAKV 219 (267)
Q Consensus 194 s~~~~~l~~g~~dg~i~i~d~~~~~~ 219 (267)
+++|+.+++-+.++.|++||+.+.+.
T Consensus 867 d~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 867 GENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred eCCCCEEEEECCCCEEEEEECCCCcc
Confidence 99999888888899999999876543
No 271
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.03 E-value=2.5e-07 Score=75.45 Aligned_cols=224 Identities=15% Similarity=0.176 Sum_probs=138.5
Q ss_pred eeCCCCCeEEEccCCCeEEEeecCCCCCCCCC--CcccccccCCe--eeEEEE-EEecCCCeeEEEeeCCCeEEEEeCCC
Q 024451 4 AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGN--LPVSRMLSGHK--GYVSCC-QYVPDEDTHLITSSGDQTCVLWDITT 78 (267)
Q Consensus 4 ~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~--~~~~~~~~~h~--~~v~~~-~~~~~~~~~l~s~~~d~~v~iwd~~~ 78 (267)
..+.||+.++- ..-|.|.+||.+...-.... +|+.+.-+..+ .+..-+ .|++.++.+++..|.. ...|.+...
T Consensus 273 ~~nsDGkrIvF-q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRG-kaFi~~~~~ 350 (668)
T COG4946 273 NANSDGKRIVF-QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRG-KAFIMRPWD 350 (668)
T ss_pred ccCCCCcEEEE-ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecC-cEEEECCCC
Confidence 35678877665 34567999987653211111 12221111111 111111 1444445566666543 444444433
Q ss_pred CeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCC-eEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEee
Q 024451 79 GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS-TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS 157 (267)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 157 (267)
+..+. .++...|.-..+..... -++.|..|| .+-|+|.+.. ..+.+...-+.|.++..+|+|++++.+-
T Consensus 351 ~~~iq-------v~~~~~VrY~r~~~~~e-~~vigt~dgD~l~iyd~~~~--e~kr~e~~lg~I~av~vs~dGK~~vvaN 420 (668)
T COG4946 351 GYSIQ-------VGKKGGVRYRRIQVDPE-GDVIGTNDGDKLGIYDKDGG--EVKRIEKDLGNIEAVKVSPDGKKVVVAN 420 (668)
T ss_pred CeeEE-------cCCCCceEEEEEccCCc-ceEEeccCCceEEEEecCCc--eEEEeeCCccceEEEEEcCCCcEEEEEc
Confidence 33222 24555566555553333 567888888 8999998642 3455555667899999999999999988
Q ss_pred CCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCC----eEEEEeCCccceeeecccccCCccce
Q 024451 158 DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG----DCYVWDTLLAKVVLNLGSLQNSHEGR 233 (267)
Q Consensus 158 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~ 233 (267)
....+.+.|+++++....- .++.+-|+...|+|+++++|=+.-+| .|++||+..++...... +..|.
T Consensus 421 dr~el~vididngnv~~id-----kS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT--~ta~D-- 491 (668)
T COG4946 421 DRFELWVIDIDNGNVRLID-----KSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT--PTAYD-- 491 (668)
T ss_pred CceEEEEEEecCCCeeEec-----ccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC--Ccccc--
Confidence 8889999999998754322 22334689999999999999876655 78999998776553221 12222
Q ss_pred EEEEEECCCCCeEEEe
Q 024451 234 ITCLGLSADGSALCTG 249 (267)
Q Consensus 234 v~~~~~~p~~~~l~sg 249 (267)
.+-+|.|++++|.--
T Consensus 492 -fsPaFD~d~ryLYfL 506 (668)
T COG4946 492 -FSPAFDPDGRYLYFL 506 (668)
T ss_pred -cCcccCCCCcEEEEE
Confidence 567899999987543
No 272
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.02 E-value=3.3e-06 Score=66.73 Aligned_cols=251 Identities=13% Similarity=0.165 Sum_probs=144.7
Q ss_pred eeeCCCCCeEEEccC---CCeEEEeecCCCCCCCCCCcc--cccccCCeeeEEEEEEecCCCeeEEEeeC-CCeEEEEeC
Q 024451 3 CAFSPTGQSVACGGL---DSVCSIFNLNSPTDKDGNLPV--SRMLSGHKGYVSCCQYVPDEDTHLITSSG-DQTCVLWDI 76 (267)
Q Consensus 3 ~~~~~~g~~l~~~~~---d~~v~~w~~~~~~~~~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-d~~v~iwd~ 76 (267)
++|+|+.++|.++-. +|.+.-|..+..+ +.+.. .....++. -.-++.++++ ++++++.. -+.|.++.+
T Consensus 45 l~~~~~~~~LY~v~~~~~~ggvaay~iD~~~---G~Lt~ln~~~~~g~~--p~yvsvd~~g-~~vf~AnY~~g~v~v~p~ 118 (346)
T COG2706 45 LAVNPDQRHLYVVNEPGEEGGVAAYRIDPDD---GRLTFLNRQTLPGSP--PCYVSVDEDG-RFVFVANYHSGSVSVYPL 118 (346)
T ss_pred EEECCCCCEEEEEEecCCcCcEEEEEEcCCC---CeEEEeeccccCCCC--CeEEEECCCC-CEEEEEEccCceEEEEEc
Confidence 578999988887654 5778888876531 11111 11222322 1446777765 57777765 488999988
Q ss_pred CC-CeeE---EEeCCccccCC----ccceEEEEEeCCCCeEEEEec-CCCeEEEEeCCCcccc---eEEeeccccceeEE
Q 024451 77 TT-GLRT---SVFGGEFQSGH----TADVLSVSISGSNSRMFVSGS-CDSTARLWDTRVASRA---VRTFHGHEGDVNTV 144 (267)
Q Consensus 77 ~~-~~~~---~~~~~~~~~~~----~~~i~~~~~~~~~~~~~~s~~-~d~~i~iwd~~~~~~~---~~~~~~~~~~i~~~ 144 (267)
+. +... .........+| ..-+....+.|. ++++++.+ .-..|.+|++..+... ...+ .....-.-+
T Consensus 119 ~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~-~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v-~~G~GPRHi 196 (346)
T COG2706 119 QADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPD-GRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV-KPGAGPRHI 196 (346)
T ss_pred ccCCccccceeeeecCCCCCCccccCCccceeeeCCC-CCEEEEeecCCceEEEEEcccCcccccccccc-CCCCCcceE
Confidence 65 3211 11110000011 112666777764 45555543 2336889988733211 1112 233456789
Q ss_pred EEecCCCEEEEeeC-CCcEEEEeCCCC-eeeEEEEee----cCCCCCCcEEEEEEccCCCEEEEEEe-CCeEEEEeCCcc
Q 024451 145 KFFPDGNRFGTGSD-DGTCRLFDIRTG-HQLQVYYQQ----HGENEIPHVTSIAFSISGRLLFAGYS-NGDCYVWDTLLA 217 (267)
Q Consensus 145 ~~~~~~~~l~~~~~-d~~i~iwd~~~~-~~~~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~g~~-dg~i~i~d~~~~ 217 (267)
.|+|++++.....+ +++|.+|..... .....+... ..........++..+++|++|.++.. ...|.+|.+...
T Consensus 197 ~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~ 276 (346)
T COG2706 197 VFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD 276 (346)
T ss_pred EEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence 99999999877774 889999998773 222222111 11122335678899999999998853 236777765432
Q ss_pred ceeeecccccCCccceEEEEEECCCCCeEEEeECC-CcEEEEecC
Q 024451 218 KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD-TNLKIWAFG 261 (267)
Q Consensus 218 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d-g~i~~w~~~ 261 (267)
.....+......+...=....|+|+|++|+.+.+| ..|.+|..+
T Consensus 277 ~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d 321 (346)
T COG2706 277 GGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERD 321 (346)
T ss_pred CCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEc
Confidence 21112222222333334667889999999887774 468888764
No 273
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.01 E-value=3.4e-07 Score=75.13 Aligned_cols=236 Identities=22% Similarity=0.313 Sum_probs=144.5
Q ss_pred eeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCC--------------
Q 024451 3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD-------------- 68 (267)
Q Consensus 3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d-------------- 68 (267)
.+|+|-|++|++....+ |.+|...... .+.+. .| ..|+-+.|+|.+ .+|.+-+..
T Consensus 38 ~~~SP~G~~l~~~~~~~-V~~~~g~~~~------~l~~~--~~-~~V~~~~fSP~~-kYL~tw~~~pi~~pe~e~sp~~~ 106 (561)
T COG5354 38 VSESPLGTYLFSEHAAG-VECWGGPSKA------KLVRF--RH-PDVKYLDFSPNE-KYLVTWSREPIIEPEIEISPFTS 106 (561)
T ss_pred eeecCcchheehhhccc-eEEccccchh------heeee--ec-CCceecccCccc-ceeeeeccCCccChhhccCCccc
Confidence 46899999999999886 8899765321 12221 12 447788899864 588776653
Q ss_pred -CeEEEEeCCCCeeEEEeCCcccc--------------------C-----C---------------ccceEEEEEeCC-C
Q 024451 69 -QTCVLWDITTGLRTSVFGGEFQS--------------------G-----H---------------TADVLSVSISGS-N 106 (267)
Q Consensus 69 -~~v~iwd~~~~~~~~~~~~~~~~--------------------~-----~---------------~~~i~~~~~~~~-~ 106 (267)
+.+.+||..++.-+..+....+. + | ...+....++|. +
T Consensus 107 ~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n 186 (561)
T COG5354 107 KNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGN 186 (561)
T ss_pred cCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhccccceeeEEecCCCC
Confidence 34999999988655443321100 0 0 123444555554 2
Q ss_pred CeEEEE-----ecCCCeEEEEeCCCccc---------------------------------------------------c
Q 024451 107 SRMFVS-----GSCDSTARLWDTRVASR---------------------------------------------------A 130 (267)
Q Consensus 107 ~~~~~s-----~~~d~~i~iwd~~~~~~---------------------------------------------------~ 130 (267)
...++. .+.++.+++|.+..... .
T Consensus 187 ~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~ 266 (561)
T COG5354 187 HDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS 266 (561)
T ss_pred CceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc
Confidence 222332 45667777776532100 0
Q ss_pred eEEeeccccceeEEEEecCCCEEEEee--CCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEE---e
Q 024451 131 VRTFHGHEGDVNTVKFFPDGNRFGTGS--DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY---S 205 (267)
Q Consensus 131 ~~~~~~~~~~i~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~---~ 205 (267)
+.....-.++|+...|.|.++.|++.+ .+-.+.++|++.. +..+..+. .-..+.|+|.+++++.++ .
T Consensus 267 i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~------~rNT~~fsp~~r~il~agF~nl 338 (561)
T COG5354 267 IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQ------KRNTIFFSPHERYILFAGFDNL 338 (561)
T ss_pred cceeccccccceeeeecccCCceeEEecccccceeecccccc--eEEecCCc------ccccccccCcccEEEEecCCcc
Confidence 001112356789999999888776654 7888999999864 22222111 235667999999887743 3
Q ss_pred CCeEEEEeCCccceee-ecccccCCccceEEEEEECCCCCeEEEeEC------CCcEEEEecCce
Q 024451 206 NGDCYVWDTLLAKVVL-NLGSLQNSHEGRITCLGLSADGSALCTGSW------DTNLKIWAFGGY 263 (267)
Q Consensus 206 dg~i~i~d~~~~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~------dg~i~~w~~~~~ 263 (267)
.|.+-+||........ .+. .....-+.|+|+++++.+... |..|+||++.|.
T Consensus 339 ~gni~i~~~~~rf~~~~~~~------~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~ 397 (561)
T COG5354 339 QGNIEIFDPAGRFKVAGAFN------GLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA 397 (561)
T ss_pred ccceEEeccCCceEEEEEee------cCCceEeeccCCceEEEecCCCcccccCcceEEEEecCc
Confidence 4899999976544332 221 112344689999999876543 888999998764
No 274
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.01 E-value=2.9e-06 Score=67.03 Aligned_cols=232 Identities=19% Similarity=0.275 Sum_probs=138.8
Q ss_pred CCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeC---CCeEEEEeCCC--CeeEEEeCCccccC
Q 024451 18 DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG---DQTCVLWDITT--GLRTSVFGGEFQSG 92 (267)
Q Consensus 18 d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~---d~~v~iwd~~~--~~~~~~~~~~~~~~ 92 (267)
+.-|.+|++.... +.+.... +-.+.+..+-+.|+|+. +.|.++-. ++.|-.|.++. +... .+......+
T Consensus 15 s~gI~v~~ld~~~---g~l~~~~-~v~~~~nptyl~~~~~~-~~LY~v~~~~~~ggvaay~iD~~~G~Lt-~ln~~~~~g 88 (346)
T COG2706 15 SQGIYVFNLDTKT---GELSLLQ-LVAELGNPTYLAVNPDQ-RHLYVVNEPGEEGGVAAYRIDPDDGRLT-FLNRQTLPG 88 (346)
T ss_pred CCceEEEEEeCcc---cccchhh-hccccCCCceEEECCCC-CEEEEEEecCCcCcEEEEEEcCCCCeEE-EeeccccCC
Confidence 5679999998533 2222222 22455667778999865 45666544 46677776653 4322 222222222
Q ss_pred CccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccc--eEEeeccccc----------eeEEEEecCCCEEEEee--C
Q 024451 93 HTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRA--VRTFHGHEGD----------VNTVKFFPDGNRFGTGS--D 158 (267)
Q Consensus 93 ~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~--~~~~~~~~~~----------i~~~~~~~~~~~l~~~~--~ 158 (267)
+ ....+++++....++.+.-.-|.|.++.++..... ..+...|.+. ++...+.|+++++++.. .
T Consensus 89 ~--~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~ 166 (346)
T COG2706 89 S--PPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGT 166 (346)
T ss_pred C--CCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCC
Confidence 2 22677788654444444445678999987643322 1122335444 89999999999988774 4
Q ss_pred CCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEE-eCCeEEEEeCCcc----ceeeecccccCCc--c
Q 024451 159 DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTLLA----KVVLNLGSLQNSH--E 231 (267)
Q Consensus 159 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~-~dg~i~i~d~~~~----~~~~~~~~~~~~~--~ 231 (267)
| .|.+|++..++......... ........+.|+|++++...-. -++.|-+|..... +.+.....++... .
T Consensus 167 D-ri~~y~~~dg~L~~~~~~~v--~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~ 243 (346)
T COG2706 167 D-RIFLYDLDDGKLTPADPAEV--KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGT 243 (346)
T ss_pred c-eEEEEEcccCcccccccccc--CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCC
Confidence 4 79999998765432111111 2223468999999999987665 5889999986542 2222222333332 3
Q ss_pred ceEEEEEECCCCCeEEEeEC-CCcEEEEec
Q 024451 232 GRITCLGLSADGSALCTGSW-DTNLKIWAF 260 (267)
Q Consensus 232 ~~v~~~~~~p~~~~l~sgs~-dg~i~~w~~ 260 (267)
....++.++|||++|..+-+ ...|.+|.+
T Consensus 244 ~~~aaIhis~dGrFLYasNRg~dsI~~f~V 273 (346)
T COG2706 244 NWAAAIHISPDGRFLYASNRGHDSIAVFSV 273 (346)
T ss_pred CceeEEEECCCCCEEEEecCCCCeEEEEEE
Confidence 34667888999999986543 235666655
No 275
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.00 E-value=2.6e-07 Score=70.06 Aligned_cols=192 Identities=15% Similarity=0.079 Sum_probs=120.9
Q ss_pred eeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccce---EEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeec
Q 024451 60 THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADV---LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG 136 (267)
Q Consensus 60 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i---~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~ 136 (267)
.+|+.|+.-|...+|...+...-..+. ..|...| ...+.. ..-+..++.|.++++.++.-... . ...
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~c----d~snn~v~~~~r~cd~---~~~~~i~sndht~k~~~~~~~s~-~--~~~ 154 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQC----DVSNNDVTLVKRYCDL---KFPLNIASNDHTGKTMVVSGDSN-K--FAV 154 (344)
T ss_pred cEEEeccccceeeeecccCcccceeee----cccccchhhhhhhccc---ccceeeccCCcceeEEEEecCcc-c--cee
Confidence 578999999999999987643211111 1121111 111111 12345678888999888753221 1 122
Q ss_pred ccc--ceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeC
Q 024451 137 HEG--DVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT 214 (267)
Q Consensus 137 ~~~--~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~ 214 (267)
|.. ...++.++++++++++.+....|-.|.+........-.... ... ..--+..|+.....+|+++.||.+.|||+
T Consensus 155 h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a-~t~-D~gF~~S~s~~~~~FAv~~Qdg~~~I~DV 232 (344)
T KOG4532|consen 155 HNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEA-PTS-DHGFYNSFSENDLQFAVVFQDGTCAIYDV 232 (344)
T ss_pred eccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEec-ccC-CCceeeeeccCcceEEEEecCCcEEEEEe
Confidence 433 37899999999999999999999999987654322111111 111 12357789999999999999999999998
Q ss_pred Cccceeeecc-cccCCccceEEEEEECCCCC--eEEEeECCCcEEEEecCce
Q 024451 215 LLAKVVLNLG-SLQNSHEGRITCLGLSADGS--ALCTGSWDTNLKIWAFGGY 263 (267)
Q Consensus 215 ~~~~~~~~~~-~~~~~~~~~v~~~~~~p~~~--~l~sgs~dg~i~~w~~~~~ 263 (267)
+....+.... .....|.+.+..+.|+|.|. +|.-.-.=+.+.+-|+..+
T Consensus 233 R~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~ 284 (344)
T KOG4532|consen 233 RNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNY 284 (344)
T ss_pred cccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccC
Confidence 7655443221 22345899999999998654 2333333455666665443
No 276
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.99 E-value=3.8e-10 Score=97.74 Aligned_cols=201 Identities=19% Similarity=0.350 Sum_probs=137.1
Q ss_pred ccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCC
Q 024451 38 VSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS 117 (267)
Q Consensus 38 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~ 117 (267)
.-+.+..|+..-+|++|+.. +++|+.|+..|.|+++++.+|..... .++|...++.+..+-...-++.+++...
T Consensus 1093 ~w~~frd~~~~fTc~afs~~-~~hL~vG~~~Geik~~nv~sG~~e~s-----~ncH~SavT~vePs~dgs~~Ltsss~S~ 1166 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGG-TNHLAVGSHAGEIKIFNVSSGSMEES-----VNCHQSAVTLVEPSVDGSTQLTSSSSSS 1166 (1516)
T ss_pred cchhhhccccceeeEEeecC-CceEEeeeccceEEEEEccCcccccc-----ccccccccccccccCCcceeeeeccccC
Confidence 34567889999999999984 57999999999999999999865433 3679999988877654444444444443
Q ss_pred -eEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccC
Q 024451 118 -TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS 196 (267)
Q Consensus 118 -~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 196 (267)
...+|+..........+. .-.++.|+.....-+.|..-....+||+.++..+..++.....+.. .-....|+|+
T Consensus 1167 PlsaLW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y-~~n~a~FsP~ 1241 (1516)
T KOG1832|consen 1167 PLSALWDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSY-SNNLAHFSPC 1241 (1516)
T ss_pred chHHHhccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhh-hccccccCCC
Confidence 567898764333343343 3567888765444444555568899999998877664432222211 2367789999
Q ss_pred CCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCceE
Q 024451 197 GRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGYR 264 (267)
Q Consensus 197 ~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~~ 264 (267)
...++ .|| .+||.+....+..+..+... -.-.|+|+|..++.-| -|||+..++
T Consensus 1242 D~LIl---ndG--vLWDvR~~~aIh~FD~ft~~-----~~G~FHP~g~eVIINS-----EIwD~RTF~ 1294 (1516)
T KOG1832|consen 1242 DTLIL---NDG--VLWDVRIPEAIHRFDQFTDY-----GGGGFHPSGNEVIINS-----EIWDMRTFK 1294 (1516)
T ss_pred cceEe---eCc--eeeeeccHHHHhhhhhheec-----ccccccCCCceEEeec-----hhhhhHHHH
Confidence 98887 677 46999887766655433211 1235899999988776 488876654
No 277
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.98 E-value=2.2e-07 Score=85.02 Aligned_cols=235 Identities=14% Similarity=0.146 Sum_probs=131.5
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
++.|.++...++.+..+|.|-+...+... ......+.. .-...|.|++|+|+++ .|+..+.++++.+.... -..
T Consensus 80 s~~yl~d~~~l~~~~~~Gdi~~~~~~~~~-~~~~~E~VG---~vd~GI~a~~WSPD~E-lla~vT~~~~l~~mt~~-fd~ 153 (928)
T PF04762_consen 80 SFQYLADSESLCIALASGDIILVREDPDP-DEDEIEIVG---SVDSGILAASWSPDEE-LLALVTGEGNLLLMTRD-FDP 153 (928)
T ss_pred EEEeccCCCcEEEEECCceEEEEEccCCC-CCceeEEEE---EEcCcEEEEEECCCcC-EEEEEeCCCEEEEEecc-ceE
Confidence 45677888888889999999988433211 111122222 2346799999999864 67778888888766432 111
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEE-------------EEeCCCcccceEEeeccccceeEEEEec
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR-------------LWDTRVASRAVRTFHGHEGDVNTVKFFP 148 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~-------------iwd~~~~~~~~~~~~~~~~~i~~~~~~~ 148 (267)
+...... .-. ......++.|+.++=. .-|..........+. +...-..++|..
T Consensus 154 i~E~~l~----------~~~---~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRG 219 (928)
T PF04762_consen 154 ISEVPLD----------SDD---FGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRG 219 (928)
T ss_pred EEEeecC----------ccc---cCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECC
Confidence 1111100 000 0111223333322100 001000000011122 334557899999
Q ss_pred CCCEEEEeeC----C--CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEe---CCeEEEEeCCccce
Q 024451 149 DGNRFGTGSD----D--GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS---NGDCYVWDTLLAKV 219 (267)
Q Consensus 149 ~~~~l~~~~~----d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~---dg~i~i~d~~~~~~ 219 (267)
||++||+.+- + +.+|||+-+ |.. ...- + ...+--.+++|-|.|++||+.-. ...|.+|.....+
T Consensus 220 DG~yFAVss~~~~~~~~R~iRVy~Re-G~L-~stS-E---~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLr- 292 (928)
T PF04762_consen 220 DGEYFAVSSVEPETGSRRVIRVYSRE-GEL-QSTS-E---PVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLR- 292 (928)
T ss_pred CCcEEEEEEEEcCCCceeEEEEECCC-ceE-Eecc-c---cCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcE-
Confidence 9999998763 2 579999864 432 2111 1 11112357899999999998764 3567777632211
Q ss_pred eeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCceE
Q 024451 220 VLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGYR 264 (267)
Q Consensus 220 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~~ 264 (267)
...+..........|..++|++|+..||.--.|. |.+|..++.+
T Consensus 293 hgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH 336 (928)
T PF04762_consen 293 HGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYH 336 (928)
T ss_pred eeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCE
Confidence 1111111123456899999999999999977655 9999877654
No 278
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.98 E-value=2.1e-08 Score=77.41 Aligned_cols=214 Identities=16% Similarity=0.208 Sum_probs=133.4
Q ss_pred eeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee-EEEeCCccccC------------CccceEEEEEeCC-CCeEEE
Q 024451 46 KGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR-TSVFGGEFQSG------------HTADVLSVSISGS-NSRMFV 111 (267)
Q Consensus 46 ~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~-~~~~~~~~~~~------------~~~~i~~~~~~~~-~~~~~~ 111 (267)
...|++|.|...+ .++++|...|.|.++.-+...- ...+-.++ ++ -...|+.+.|..+ +...++
T Consensus 26 ad~ItaVefd~tg-~YlatGDkgGRVvlfer~~s~~ceykf~teF-Qshe~EFDYLkSleieEKin~I~w~~~t~r~hFL 103 (460)
T COG5170 26 ADKITAVEFDETG-LYLATGDKGGRVVLFEREKSYGCEYKFFTEF-QSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL 103 (460)
T ss_pred cceeeEEEecccc-ceEeecCCCceEEEeecccccccchhhhhhh-cccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence 4568899997754 5899998889999997654321 01010011 11 2345677777643 334677
Q ss_pred EecCCCeEEEEeCCCc------------------c-----------------------cceEEe-eccccceeEEEEecC
Q 024451 112 SGSCDSTARLWDTRVA------------------S-----------------------RAVRTF-HGHEGDVNTVKFFPD 149 (267)
Q Consensus 112 s~~~d~~i~iwd~~~~------------------~-----------------------~~~~~~-~~~~~~i~~~~~~~~ 149 (267)
..+.|.+|++|.+... . ++.+.+ .+|..-|+++.|..+
T Consensus 104 lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD 183 (460)
T COG5170 104 LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSD 183 (460)
T ss_pred EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCc
Confidence 7889999999976421 0 011222 456667889999888
Q ss_pred CCEEEEeeCCCcEEEEeCCCCeeeEEEEe--ecCCC-CCCcEEEEEEccCCC-EEEEEEeCCeEEEEeCCccceeeeccc
Q 024451 150 GNRFGTGSDDGTCRLFDIRTGHQLQVYYQ--QHGEN-EIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAKVVLNLGS 225 (267)
Q Consensus 150 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~~-~~~~v~~~~~s~~~~-~l~~g~~dg~i~i~d~~~~~~~~~~~~ 225 (267)
...+++ ..|-.|.+|+++.......+.. ++... -..-|++..|+|... .+.-.++.|.|++-|+++.....+...
T Consensus 184 ~et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k 262 (460)
T COG5170 184 KETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK 262 (460)
T ss_pred hheeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh
Confidence 777765 5678999999865432222211 11111 112467888998754 455567889999999875433221110
Q ss_pred ------ccCC------ccceEEEEEECCCCCeEEEeECCCcEEEEecCce
Q 024451 226 ------LQNS------HEGRITCLGLSADGSALCTGSWDTNLKIWAFGGY 263 (267)
Q Consensus 226 ------~~~~------~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~ 263 (267)
.+.. -.+.|..+.|+|+|+|+++-+. -+++|||.+.-
T Consensus 263 lfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~ 311 (460)
T COG5170 263 LFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMA 311 (460)
T ss_pred hhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccc
Confidence 0011 1246788999999999998765 58999997654
No 279
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.96 E-value=3.9e-09 Score=82.37 Aligned_cols=178 Identities=13% Similarity=0.193 Sum_probs=115.2
Q ss_pred EEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcc---
Q 024451 52 CQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS--- 128 (267)
Q Consensus 52 ~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~--- 128 (267)
|+|+-....+-++.+.+..|-+-|++++..... ..+.+|.++.|.. .+.++..|+.+|.|...|++...
T Consensus 217 CawSlni~gyhfs~G~sqqv~L~nvetg~~qsf-------~sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG~ 288 (425)
T KOG2695|consen 217 CAWSLNIMGYHFSVGLSQQVLLTNVETGHQQSF-------QSKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQGN 288 (425)
T ss_pred hhhhhccceeeecccccceeEEEEeeccccccc-------ccchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecccCC
Confidence 344432223346677777788888887743221 2456777777774 35688899999999999998541
Q ss_pred cceEEeeccccceeEEEEec-CCCEEEEeeCCCcEEEEeCCCCee---eEEEEeecCCCCCCcEEEEEEccCCCEEEEEE
Q 024451 129 RAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQ---LQVYYQQHGENEIPHVTSIAFSISGRLLFAGY 204 (267)
Q Consensus 129 ~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~ 204 (267)
.-..+-.-|...|+++..-. ++.+|++.+.+|+|++||++..++ +..+..+.. ...+ .-+-..+....+++++
T Consensus 289 ~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN--~~a~-l~~~v~~eeg~I~s~G 365 (425)
T KOG2695|consen 289 GWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVN--LSAY-LPAHVKEEEGSIFSVG 365 (425)
T ss_pred CcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccc--cccc-cccccccccceEEEcc
Confidence 11122223788888887766 678899999999999999988776 333322211 1111 1223456778899999
Q ss_pred eCCeEEEEeCCccceeeecccccCCccceEEEEEEC
Q 024451 205 SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS 240 (267)
Q Consensus 205 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~ 240 (267)
.|-..+||.+..+..+.........-+..+.+++|.
T Consensus 366 dDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 366 DDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred CeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence 999999999987766554433222223356666664
No 280
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.96 E-value=2e-09 Score=83.90 Aligned_cols=153 Identities=16% Similarity=0.201 Sum_probs=107.7
Q ss_pred EEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccC
Q 024451 13 ACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSG 92 (267)
Q Consensus 13 ~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~ 92 (267)
++.|-+-.+-+-|++.. ....+. .++.|++.+|... +++++.|+..|.|...|+++..+-....... ..
T Consensus 228 fs~G~sqqv~L~nvetg--------~~qsf~-sksDVfAlQf~~s-~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r-ly 296 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETG--------HQQSFQ-SKSDVFALQFAGS-DNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR-LY 296 (425)
T ss_pred ecccccceeEEEEeecc--------cccccc-cchhHHHHHhccc-CCeeEecccCCcEEEEEeeecccCCCcceEE-EE
Confidence 56666777778777652 222232 5677888899875 4688999999999999998652100000000 13
Q ss_pred CccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCccc--ceEEeeccccceeE--EEEecCCCEEEEeeCCCcEEEEeCC
Q 024451 93 HTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR--AVRTFHGHEGDVNT--VKFFPDGNRFGTGSDDGTCRLFDIR 168 (267)
Q Consensus 93 ~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~~i~~--~~~~~~~~~l~~~~~d~~i~iwd~~ 168 (267)
|...++++.....+++.+++.+.+|+|++||.+.... .+.++.||...-.- +-.++....++++++|-..|||.++
T Consensus 297 h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~ 376 (425)
T KOG2695|consen 297 HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLD 376 (425)
T ss_pred cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecc
Confidence 7888888877755677888999999999999985432 37788888654332 3345666788889999999999999
Q ss_pred CCeeeEEE
Q 024451 169 TGHQLQVY 176 (267)
Q Consensus 169 ~~~~~~~~ 176 (267)
.+..+..+
T Consensus 377 ~ghLl~ti 384 (425)
T KOG2695|consen 377 SGHLLCTI 384 (425)
T ss_pred cCceeecc
Confidence 98766544
No 281
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.94 E-value=2.7e-06 Score=71.62 Aligned_cols=194 Identities=16% Similarity=0.169 Sum_probs=115.9
Q ss_pred eEEEEEEecCCCeeEEEeeC---CCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCC--eEEEE
Q 024451 48 YVSCCQYVPDEDTHLITSSG---DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS--TARLW 122 (267)
Q Consensus 48 ~v~~~~~~~~~~~~l~s~~~---d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~--~i~iw 122 (267)
.+..-.|+|++...++..+. +..|.++|+.+++...... .........|+|.+.+++++.+.++ .|.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~------~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~ 262 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS------SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLY 262 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec------CCCcEEeeEECCCCCEEEEEEccCCCcEEEEE
Confidence 56778999987643443333 3568899998887655432 1223445668876666666655454 56677
Q ss_pred eCCCcccceEEeeccccceeEEEEecCCCEEEEeeC-CC--cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCE
Q 024451 123 DTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD-DG--TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRL 199 (267)
Q Consensus 123 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 199 (267)
|+... ..+.+..+........|+|+|+.++-.+. .+ .|.+.|+.+++....... .. . ...|+|+|+.
T Consensus 263 dl~~g--~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~--g~----~--~~~~SPDG~~ 332 (419)
T PRK04043 263 DTNTK--TLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH--GK----N--NSSVSTYKNY 332 (419)
T ss_pred ECCCC--cEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC--CC----c--CceECCCCCE
Confidence 76532 23444333333345689999987776553 33 577778876654332211 11 1 2379999998
Q ss_pred EEEEEeC---------CeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECC-Cc--EEEEecCce
Q 024451 200 LFAGYSN---------GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD-TN--LKIWAFGGY 263 (267)
Q Consensus 200 l~~g~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d-g~--i~~w~~~~~ 263 (267)
++..... ..|++.|+..++... +. . . +......|+|||+.++-.+.+ +. +.+.+++|.
T Consensus 333 Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT---~-~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 333 IVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LT---A-N-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred EEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CC---C-C-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 8776543 368888876654322 21 1 1 122357899999988765543 33 444466553
No 282
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.90 E-value=7.5e-09 Score=56.16 Aligned_cols=37 Identities=49% Similarity=0.942 Sum_probs=34.9
Q ss_pred ceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEe
Q 024451 130 AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFD 166 (267)
Q Consensus 130 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd 166 (267)
++..+.+|.+.|.+++|+|++++|++++.|+.|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4677889999999999999999999999999999997
No 283
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.86 E-value=2e-06 Score=66.02 Aligned_cols=198 Identities=14% Similarity=0.200 Sum_probs=105.2
Q ss_pred eeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCccccccc-CCeeeEEEEEEecCC-----CeeEEEeeCCCeEEEEeC
Q 024451 3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLS-GHKGYVSCCQYVPDE-----DTHLITSSGDQTCVLWDI 76 (267)
Q Consensus 3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~-----~~~l~s~~~d~~v~iwd~ 76 (267)
++|+||+.+||.+...|+|++||+....- ...+...... .-...|..+.|.+.. ...|+.-..+|.++-|-+
T Consensus 49 l~WSpD~tlLa~a~S~G~i~vfdl~g~~l--f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~v 126 (282)
T PF15492_consen 49 LAWSPDCTLLAYAESTGTIRVFDLMGSEL--FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLV 126 (282)
T ss_pred EEECCCCcEEEEEcCCCeEEEEeccccee--EEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEE
Confidence 68999999999999999999999875210 0011111111 123455556665322 123556667788877765
Q ss_pred CCC-----eeEEEeCCccccCCccceEEEEEeCCCCeEEEEecC-CCeEEEEeCCCcccceEEeeccccceeEEEE---e
Q 024451 77 TTG-----LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC-DSTARLWDTRVASRAVRTFHGHEGDVNTVKF---F 147 (267)
Q Consensus 77 ~~~-----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~---~ 147 (267)
..+ .....+ .+...+...|.++.+++.+. +|+.||. ...-..+. +....+++-.. .
T Consensus 127 s~gt~q~y~e~hsf--sf~~~yp~Gi~~~vy~p~h~-LLlVgG~~~~~~~~s~------------a~~~GLtaWRiL~~~ 191 (282)
T PF15492_consen 127 SVGTNQGYQENHSF--SFSSHYPHGINSAVYHPKHR-LLLVGGCEQNQDGMSK------------ASSCGLTAWRILSDS 191 (282)
T ss_pred EcccCCcceeeEEE--EecccCCCceeEEEEcCCCC-EEEEeccCCCCCcccc------------ccccCceEEEEcCCC
Confidence 321 111122 12233456788999997654 5555543 32211110 01111222111 1
Q ss_pred cCCCEEEEeeCCCc------EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceee
Q 024451 148 PDGNRFGTGSDDGT------CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVL 221 (267)
Q Consensus 148 ~~~~~l~~~~~d~~------i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~ 221 (267)
|..+. ++..+|+. ..+|.+-+.+ ++... ..+...|..++.||+|+.|++...+|.|.+|++...+...
T Consensus 192 Pyyk~-v~~~~~~~~~~~~~~~~~~~~~~~----~fs~~-~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~ 265 (282)
T PF15492_consen 192 PYYKQ-VTSSEDDITASSKRRGLLRIPSFK----FFSRQ-GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQR 265 (282)
T ss_pred CcEEE-ccccCccccccccccceeecccee----eeecc-ccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhc
Confidence 22121 12222211 1223222111 11111 1234579999999999999999999999999987665544
Q ss_pred ec
Q 024451 222 NL 223 (267)
Q Consensus 222 ~~ 223 (267)
..
T Consensus 266 ~W 267 (282)
T PF15492_consen 266 SW 267 (282)
T ss_pred cc
Confidence 33
No 284
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.84 E-value=8.8e-06 Score=66.72 Aligned_cols=193 Identities=16% Similarity=0.162 Sum_probs=125.0
Q ss_pred ecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCC-ccccCCc--cce---EEEE-EeCCCCeEEEEecCCCeEEEEeCCCc
Q 024451 55 VPDEDTHLITSSGDQTCVLWDITTGLRTSVFGG-EFQSGHT--ADV---LSVS-ISGSNSRMFVSGSCDSTARLWDTRVA 127 (267)
Q Consensus 55 ~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~-~~~~~~~--~~i---~~~~-~~~~~~~~~~s~~~d~~i~iwd~~~~ 127 (267)
+.++.+.+++ ..|.|.+||.++......--+ ......+ ..+ .-+. ++..++.+++..+. |+.-+.+.-.
T Consensus 275 nsDGkrIvFq--~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~- 350 (668)
T COG4946 275 NSDGKRIVFQ--NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWD- 350 (668)
T ss_pred CCCCcEEEEe--cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCC-
Confidence 3455554544 456699999887643322111 1100000 000 0111 33345556666665 3455554321
Q ss_pred ccceEEeeccccceeEEEEecCCCEEEEeeCCC-cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeC
Q 024451 128 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG-TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN 206 (267)
Q Consensus 128 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d 206 (267)
.. .- ..+|.+.|.-..+.-+++-++.|..|| .+-|+|.++++.... ....+.|.++..+++|.+++++...
T Consensus 351 ~~-~i-qv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~------e~~lg~I~av~vs~dGK~~vvaNdr 422 (668)
T COG4946 351 GY-SI-QVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRI------EKDLGNIEAVKVSPDGKKVVVANDR 422 (668)
T ss_pred Ce-eE-EcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEe------eCCccceEEEEEcCCCcEEEEEcCc
Confidence 21 22 235677788777777778899999999 999999988764322 1233568999999999999999999
Q ss_pred CeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCC----cEEEEecCce
Q 024451 207 GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT----NLKIWAFGGY 263 (267)
Q Consensus 207 g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg----~i~~w~~~~~ 263 (267)
.++.++|+.++.... +.+.-.+-|+...|+|+++++|=+--+| .|+++++.+.
T Consensus 423 ~el~vididngnv~~----idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~ 479 (668)
T COG4946 423 FELWVIDIDNGNVRL----IDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGG 479 (668)
T ss_pred eEEEEEEecCCCeeE----ecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCC
Confidence 999999998876532 2244567899999999999999776665 5899998764
No 285
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=1.7e-06 Score=71.94 Aligned_cols=115 Identities=23% Similarity=0.358 Sum_probs=75.2
Q ss_pred ceeEEEEecCCCEEEEeeC---CCcEEEEeCCCC-eeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEE---eCCeEEEE
Q 024451 140 DVNTVKFFPDGNRFGTGSD---DGTCRLFDIRTG-HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY---SNGDCYVW 212 (267)
Q Consensus 140 ~i~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~---~dg~i~i~ 212 (267)
.|...+|-|.|+.|++-+. ..++++|.+++. ...... . .........+-|+|.|++++++. ..|.+.++
T Consensus 447 ~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lV-k---~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~ 522 (698)
T KOG2314|consen 447 SVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLV-K---ELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFY 522 (698)
T ss_pred heeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhh-h---hhcccccceEEEcCCCcEEEEEEecccccceEEE
Confidence 4566788999988876553 357888888742 211111 1 11123467899999999998764 57899999
Q ss_pred eCCccceeeecccccCCccceEEEEEECCCCCeEEEeEC------CCcEEEEecCc
Q 024451 213 DTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW------DTNLKIWAFGG 262 (267)
Q Consensus 213 d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~------dg~i~~w~~~~ 262 (267)
|+..... ..+.. ..|. ..+.+.|.|.|+|++++|. |.--+||.|-|
T Consensus 523 D~~~a~~-k~~~~--~eh~-~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqG 574 (698)
T KOG2314|consen 523 DTDYADL-KDTAS--PEHF-AATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG 574 (698)
T ss_pred ecchhhh-hhccC--cccc-ccccceECCCCCEEEEeeehhhhccccceEEEEeec
Confidence 9764211 11111 2343 3567999999999999886 45567787755
No 286
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=2.4e-06 Score=71.05 Aligned_cols=180 Identities=17% Similarity=0.221 Sum_probs=115.4
Q ss_pred ccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeC--CC---------eEEEEeCCCCeeEE
Q 024451 15 GGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG--DQ---------TCVLWDITTGLRTS 83 (267)
Q Consensus 15 ~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~--d~---------~v~iwd~~~~~~~~ 83 (267)
.|+=+.|++|.+.... ..... ..+++- ..+.| .+.|++-+..+|+.++. |+ ++.+.+++......
T Consensus 190 kGaPa~vri~~~~~~~-~~~~~-a~ksFF-kadkv-qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V 265 (566)
T KOG2315|consen 190 KGAPASVRIYKYPEEG-QHQPV-ANKSFF-KADKV-QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSV 265 (566)
T ss_pred CCCCcEEEEecccccc-ccchh-hhcccc-cccee-EEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEE
Confidence 6777889999876321 11111 111111 11222 35677766655554443 33 46666665222221
Q ss_pred EeCCccccCCccceEEEEEeCCCCeEE-EEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCC---
Q 024451 84 VFGGEFQSGHTADVLSVSISGSNSRMF-VSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD--- 159 (267)
Q Consensus 84 ~~~~~~~~~~~~~i~~~~~~~~~~~~~-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--- 159 (267)
. ....++|.++.|+++...+. +.|-+-..+.|+|++. .++..+ .+++=+++-|+|.|++++.+|-+
T Consensus 266 ~------L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~--~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~ 335 (566)
T KOG2315|consen 266 P------LLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG--KPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLP 335 (566)
T ss_pred e------cCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC--CEeEeC--CCCCccceEECCCCCEEEEeecCCCC
Confidence 1 23578999999998654443 3456778899999873 445444 35677899999999999888754
Q ss_pred CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEe------CCeEEEEeCC
Q 024451 160 GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS------NGDCYVWDTL 215 (267)
Q Consensus 160 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~------dg~i~i~d~~ 215 (267)
|.+.|||..+.+++..+. ....+-+.|+|+|+++++++. |+.++||+..
T Consensus 336 G~mEvwDv~n~K~i~~~~-------a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 336 GDMEVWDVPNRKLIAKFK-------AANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred CceEEEeccchhhccccc-------cCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 789999998865544321 223467789999999999875 6789999963
No 287
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.81 E-value=1.2e-07 Score=75.45 Aligned_cols=102 Identities=16% Similarity=0.194 Sum_probs=75.9
Q ss_pred ecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEE
Q 024451 113 GSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIA 192 (267)
Q Consensus 113 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 192 (267)
++....+.+|.... .....+.||...+..++++||.++++++..|..||+-.......+..+. -++...|+.++
T Consensus 128 agD~~~~di~s~~~--~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfc----lGH~eFVS~is 201 (390)
T KOG3914|consen 128 AGDVYSFDILSADS--GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFC----LGHKEFVSTIS 201 (390)
T ss_pred cCCceeeeeecccc--cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhc----cccHhheeeee
Confidence 34445566776542 3455667999999999999999999999999999997765444443332 23445788888
Q ss_pred EccCCCEEEEEEeCCeEEEEeCCccceee
Q 024451 193 FSISGRLLFAGYSNGDCYVWDTLLAKVVL 221 (267)
Q Consensus 193 ~s~~~~~l~~g~~dg~i~i~d~~~~~~~~ 221 (267)
.-++ ..|++|+.|++|++||..+++.+.
T Consensus 202 l~~~-~~LlS~sGD~tlr~Wd~~sgk~L~ 229 (390)
T KOG3914|consen 202 LTDN-YLLLSGSGDKTLRLWDITSGKLLD 229 (390)
T ss_pred eccC-ceeeecCCCCcEEEEecccCCccc
Confidence 7655 458999999999999998877653
No 288
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.79 E-value=1.8e-08 Score=54.65 Aligned_cols=32 Identities=31% Similarity=0.675 Sum_probs=30.5
Q ss_pred CCccceEEEEEECCCCCeEEEeECCCcEEEEe
Q 024451 228 NSHEGRITCLGLSADGSALCTGSWDTNLKIWA 259 (267)
Q Consensus 228 ~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~ 259 (267)
..|.++|.+++|+|++++|++|+.|+.|++|+
T Consensus 8 ~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 8 RGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp ESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred cCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 47999999999999999999999999999996
No 289
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.76 E-value=5e-08 Score=73.51 Aligned_cols=145 Identities=18% Similarity=0.225 Sum_probs=90.3
Q ss_pred eEEEEecCCCeEEEEeCCCcccceEEee-ccccceeEEEEecCCCEEEEee-----CCCcEEEEeCCCCeeeEEEEeecC
Q 024451 108 RMFVSGSCDSTARLWDTRVASRAVRTFH-GHEGDVNTVKFFPDGNRFGTGS-----DDGTCRLFDIRTGHQLQVYYQQHG 181 (267)
Q Consensus 108 ~~~~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~-----~d~~i~iwd~~~~~~~~~~~~~~~ 181 (267)
.-+++++.||.+-+++.+......+++. .|.+ -.+..+...++.+.++. .-+....|+++..+.+ .....
T Consensus 102 t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~---~~~~~ 177 (319)
T KOG4714|consen 102 NRVCIGYADGSLAVFSTDKDLALMSRIPSIHSG-SASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTL---IPSKK 177 (319)
T ss_pred CceEecCCCceEEEEechHHHhhhhhccccccc-ccccceeecccEEecCCcceEeeccceeeecccccccc---ccccc
Confidence 3578899999999998763211111111 1111 11222222344443332 1234556666543322 11111
Q ss_pred CCCCCcEEEEEEccCCC-EEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECC-CCCeEEEeECCCcEEEEe
Q 024451 182 ENEIPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA-DGSALCTGSWDTNLKIWA 259 (267)
Q Consensus 182 ~~~~~~v~~~~~s~~~~-~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~sgs~dg~i~~w~ 259 (267)
. ...+++++-+|..+ .+++|+.||.+-+||.+....+.. ....|+.+++.+-|+| ++..|.++++||.+--|+
T Consensus 178 ~--~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S---~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wd 252 (319)
T KOG4714|consen 178 A--LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVS---LLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWD 252 (319)
T ss_pred c--cccchhhhCCcccccEEEEecCCCeEEEEEcccccchHH---HHHHhhhhhhheeccCCCchheeEecCCCcEEEEc
Confidence 1 12388888888765 567788899999999987754433 3467999999999997 678999999999999998
Q ss_pred cC
Q 024451 260 FG 261 (267)
Q Consensus 260 ~~ 261 (267)
-.
T Consensus 253 as 254 (319)
T KOG4714|consen 253 AS 254 (319)
T ss_pred CC
Confidence 65
No 290
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.75 E-value=3.8e-07 Score=77.97 Aligned_cols=164 Identities=12% Similarity=0.174 Sum_probs=117.1
Q ss_pred CeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeC----------CccccCCccceEEEEEeCCCCeEEEEec
Q 024451 45 HKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFG----------GEFQSGHTADVLSVSISGSNSRMFVSGS 114 (267)
Q Consensus 45 h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~----------~~~~~~~~~~i~~~~~~~~~~~~~~s~~ 114 (267)
.+....|+.|+.. ..+++.|+.||.+++-.+.+...-.... .+...||+..|.-+.|+..+ +.+-|..
T Consensus 13 nnvkL~c~~WNke-~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~-QKLTtSD 90 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKE-SGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENN-QKLTTSD 90 (1189)
T ss_pred CCceEEEEEEccc-CCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccc-ccccccC
Confidence 4566889999985 4699999999999999887642111110 12345899999999999755 4567888
Q ss_pred CCCeEEEEeCCCcccceEEee-ccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEE
Q 024451 115 CDSTARLWDTRVASRAVRTFH-GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAF 193 (267)
Q Consensus 115 ~d~~i~iwd~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~ 193 (267)
.+|.|-+|=+-.++-....+. -..+.|.++.|..+|..+.....||.|.+=.++.+. + +... .+......+.|
T Consensus 91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNR-I---wgKe--Lkg~~l~hv~w 164 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNR-I---WGKE--LKGQLLAHVLW 164 (1189)
T ss_pred CCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccce-e---cchh--cchheccceee
Confidence 999999997643221111111 124568899999999999999999999987775432 2 2211 12233567889
Q ss_pred ccCCCEEEEEEeCCeEEEEeCCc
Q 024451 194 SISGRLLFAGYSNGDCYVWDTLL 216 (267)
Q Consensus 194 s~~~~~l~~g~~dg~i~i~d~~~ 216 (267)
++|.+.++.+-.+|..++||.+.
T Consensus 165 s~D~~~~Lf~~ange~hlydnqg 187 (1189)
T KOG2041|consen 165 SEDLEQALFKKANGETHLYDNQG 187 (1189)
T ss_pred cccHHHHHhhhcCCcEEEecccc
Confidence 99999999999999999999654
No 291
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.75 E-value=2.1e-07 Score=81.38 Aligned_cols=181 Identities=22% Similarity=0.277 Sum_probs=119.3
Q ss_pred eEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccc
Q 024451 61 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGD 140 (267)
Q Consensus 61 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 140 (267)
.++-|+.-..+.-+|+++........ .....+. +...+++.+.+|...|+|.+-|.+. .+.+..+.+|.+.
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~-----v~a~~v~---imR~Nnr~lf~G~t~G~V~LrD~~s-~~~iht~~aHs~s 219 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTN-----VSASGVT---IMRYNNRNLFCGDTRGTVFLRDPNS-FETIHTFDAHSGS 219 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeee-----ccCCceE---EEEecCcEEEeecccceEEeecCCc-Cceeeeeeccccc
Confidence 45566666666677777654433321 1111232 3334668889999999999999874 5678899999999
Q ss_pred eeEEEEecCCCEEEEeeC---------CCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccC-CCEEEEEEeCCeEE
Q 024451 141 VNTVKFFPDGNRFGTGSD---------DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS-GRLLFAGYSNGDCY 210 (267)
Q Consensus 141 i~~~~~~~~~~~l~~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~g~~dg~i~ 210 (267)
|..++. .|+.|++||. |.-|+|||++.-+.+.-+.-.. ...=+.|.|. ...+++.+..|...
T Consensus 220 iSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~------~P~flrf~Psl~t~~~V~S~sGq~q 291 (1118)
T KOG1275|consen 220 ISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPY------GPQFLRFHPSLTTRLAVTSQSGQFQ 291 (1118)
T ss_pred eeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCccccc------CchhhhhcccccceEEEEeccccee
Confidence 987776 5788888874 4569999998755432111110 1133456665 34677788899999
Q ss_pred EEeCCcc-ceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEe
Q 024451 211 VWDTLLA-KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWA 259 (267)
Q Consensus 211 i~d~~~~-~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~ 259 (267)
+-|..+. .....+... ......+.+++++++|+.||.|..+|.|.+|.
T Consensus 292 ~vd~~~lsNP~~~~~~v-~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 292 FVDTATLSNPPAGVKMV-NPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred eccccccCCCccceeEE-ccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 9983321 111111111 12334589999999999999999999999996
No 292
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.70 E-value=1.1e-05 Score=67.90 Aligned_cols=189 Identities=13% Similarity=0.042 Sum_probs=106.0
Q ss_pred ceeeCCCCCe-EEEccCC---CeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCC--CeEEEEe
Q 024451 2 TCAFSPTGQS-VACGGLD---SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD--QTCVLWD 75 (267)
Q Consensus 2 ~~~~~~~g~~-l~~~~~d---~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d--~~v~iwd 75 (267)
.-.|+|||+. ++..+.+ ..|.++|+.... .+.+....+......|+|++...+++.+.+ ..|.++|
T Consensus 192 ~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~--------~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d 263 (419)
T PRK04043 192 FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGK--------KEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYD 263 (419)
T ss_pred eEEECCCCCcEEEEEEccCCCCEEEEEECCCCc--------EEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEE
Confidence 3579999984 6644433 456677764321 111222334455677999887766666555 4577778
Q ss_pred CCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCC--eEEEEeCCCcccceEEeeccccceeEEEEecCCCEE
Q 024451 76 ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS--TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRF 153 (267)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 153 (267)
+.++....... +........|+|.+.+++.+....+ .|.+.|+.... .+.+... +. ....|+|+|+.+
T Consensus 264 l~~g~~~~LT~------~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~--~~rlt~~-g~-~~~~~SPDG~~I 333 (419)
T PRK04043 264 TNTKTLTQITN------YPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGS--VEQVVFH-GK-NNSSVSTYKNYI 333 (419)
T ss_pred CCCCcEEEccc------CCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCC--eEeCccC-CC-cCceECCCCCEE
Confidence 87765443221 1111223458876666666665555 46666665322 2222211 11 224899999988
Q ss_pred EEeeCC---------CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeC-C--eEEEEeCC
Q 024451 154 GTGSDD---------GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN-G--DCYVWDTL 215 (267)
Q Consensus 154 ~~~~~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d-g--~i~i~d~~ 215 (267)
+-.+.. ..|.+.|+.++.... +.. .. ......|+|+|+.++..... + .+.+.++.
T Consensus 334 a~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~-~~-----~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~ 400 (419)
T PRK04043 334 VYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTA-NG-----VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN 400 (419)
T ss_pred EEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCC-CC-----CcCCeEECCCCCEEEEEEccCCcEEEEEEecC
Confidence 766543 257778887765422 221 11 12346799999987665543 2 35555553
No 293
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.69 E-value=7.2e-05 Score=58.58 Aligned_cols=224 Identities=17% Similarity=0.163 Sum_probs=133.8
Q ss_pred eeeCC-CCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCee
Q 024451 3 CAFSP-TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 3 ~~~~~-~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
..|.+ +|.++.+--..+.|..|+..... .....+.+ ...+.+...++. ++.+..++ +.++|..++..
T Consensus 5 p~~d~~~g~l~~~D~~~~~i~~~~~~~~~------~~~~~~~~----~~G~~~~~~~g~-l~v~~~~~-~~~~d~~~g~~ 72 (246)
T PF08450_consen 5 PVWDPRDGRLYWVDIPGGRIYRVDPDTGE------VEVIDLPG----PNGMAFDRPDGR-LYVADSGG-IAVVDPDTGKV 72 (246)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTTTE------EEEEESSS----EEEEEEECTTSE-EEEEETTC-EEEEETTTTEE
T ss_pred eEEECCCCEEEEEEcCCCEEEEEECCCCe------EEEEecCC----CceEEEEccCCE-EEEEEcCc-eEEEecCCCcE
Confidence 46777 78888887789999999876421 01111111 445566633344 55555544 45559888754
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCC--------CeEEEEeCCCcccceEEeeccccceeEEEEecCCCEE
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD--------STARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRF 153 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d--------~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 153 (267)
................+.+++.+. ++++++.... |.|..++.. .+ ...+.......+.++|+|+++.|
T Consensus 73 ~~~~~~~~~~~~~~~~ND~~vd~~-G~ly~t~~~~~~~~~~~~g~v~~~~~~--~~-~~~~~~~~~~pNGi~~s~dg~~l 148 (246)
T PF08450_consen 73 TVLADLPDGGVPFNRPNDVAVDPD-GNLYVTDSGGGGASGIDPGSVYRIDPD--GK-VTVVADGLGFPNGIAFSPDGKTL 148 (246)
T ss_dssp EEEEEEETTCSCTEEEEEEEE-TT-S-EEEEEECCBCTTCGGSEEEEEEETT--SE-EEEEEEEESSEEEEEEETTSSEE
T ss_pred EEEeeccCCCcccCCCceEEEcCC-CCEEEEecCCCccccccccceEEECCC--Ce-EEEEecCcccccceEECCcchhe
Confidence 444322111113456788888864 5677765433 456666654 22 23333334556899999999876
Q ss_pred E-EeeCCCcEEEEeCCCCee-e---EEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccC
Q 024451 154 G-TGSDDGTCRLFDIRTGHQ-L---QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQN 228 (267)
Q Consensus 154 ~-~~~~d~~i~iwd~~~~~~-~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~ 228 (267)
+ +-+..+.|..+++..... + ..+.. ........-.++++.+|++.++....+.|.++|.. ++.+..+. .
T Consensus 149 yv~ds~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~---~ 222 (246)
T PF08450_consen 149 YVADSFNGRIWRFDLDADGGELSNRRVFID--FPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIE---L 222 (246)
T ss_dssp EEEETTTTEEEEEEEETTTCCEEEEEEEEE---SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE----
T ss_pred eecccccceeEEEeccccccceeeeeeEEE--cCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEc---C
Confidence 5 567788899999864322 1 12211 11112346789999999999998889999999976 66554432 1
Q ss_pred CccceEEEEEE-CCCCCeEEEe
Q 024451 229 SHEGRITCLGL-SADGSALCTG 249 (267)
Q Consensus 229 ~~~~~v~~~~~-~p~~~~l~sg 249 (267)
. ...+++++| -|+.+.|...
T Consensus 223 p-~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 223 P-VPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp S-SSSEEEEEEESTTSSEEEEE
T ss_pred C-CCCEEEEEEECCCCCEEEEE
Confidence 2 236889999 4776655443
No 294
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.68 E-value=2.4e-07 Score=79.37 Aligned_cols=225 Identities=15% Similarity=0.248 Sum_probs=142.5
Q ss_pred eeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCC--CeeEEEeeCCCeEEEEeCCCCee
Q 024451 4 AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE--DTHLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 4 ~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
..+|.|+-++.++.-| +.+-|+..+-.+.. ..+.+ ..-.|-.++|+|.. +..+++-+.-+ -.+|++.....
T Consensus 31 si~p~grdi~lAsr~g-l~i~dld~p~~ppr---~l~h~--tpw~vad~qws~h~a~~~wiVsts~qk-aiiwnlA~ss~ 103 (1081)
T KOG0309|consen 31 SINPSGRDIVLASRQG-LYIIDLDDPFTPPR---WLHHI--TPWQVADVQWSPHPAKPYWIVSTSNQK-AIIWNLAKSSS 103 (1081)
T ss_pred eeccccchhhhhhhcC-eEEEeccCCCCCce---eeecc--CcchhcceecccCCCCceeEEecCcch-hhhhhhhcCCc
Confidence 4678888888888776 66777766432210 11111 12345567777542 34555544444 34798864322
Q ss_pred EEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451 82 TSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGT 161 (267)
Q Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 161 (267)
..+. ...-+|...++.+.|++.+...+++++.|-.+..||++....++.+..........+.|+-....+.+.+..+-
T Consensus 104 ~aIe--f~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~ 181 (1081)
T KOG0309|consen 104 NAIE--FVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGND 181 (1081)
T ss_pred cceE--EEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCc
Confidence 1111 11247899999999998888899999999999999998776677666655667788999865444555577788
Q ss_pred EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEcc-CCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEEC
Q 024451 162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI-SGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS 240 (267)
Q Consensus 162 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~ 240 (267)
|++||++.+.......+. +...+..+.|.. ....+.+.+.||.|++||......... +. .....+|.--.+.
T Consensus 182 i~vwd~r~gs~pl~s~K~----~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~--~~-vtt~~piw~~r~~ 254 (1081)
T KOG0309|consen 182 IFVWDLRKGSTPLCSLKG----HVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESK--RT-VTTNFPIWRGRYL 254 (1081)
T ss_pred eEEEeccCCCcceEEecc----cceeeehHHHhhhhhhhhcccCCCCceeeecccccccccc--ee-ccccCcceecccc
Confidence 999999988766544432 223456666643 234577788999999999754332211 00 1233455555566
Q ss_pred CCCC
Q 024451 241 ADGS 244 (267)
Q Consensus 241 p~~~ 244 (267)
|-|+
T Consensus 255 Pfg~ 258 (1081)
T KOG0309|consen 255 PFGE 258 (1081)
T ss_pred ccCc
Confidence 6443
No 295
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.66 E-value=3.8e-05 Score=59.17 Aligned_cols=236 Identities=16% Similarity=0.140 Sum_probs=119.7
Q ss_pred eeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeE
Q 024451 3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT 82 (267)
Q Consensus 3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 82 (267)
++.+.+|+.||. -.|..|.+=.....- ..-..++ ..-+.-.-.=.-++|+|++ .+||.+...|+|+++|+.... .
T Consensus 3 ~~~~~~Gk~lAi-~qd~~iEiRsa~Ddf-~si~~kc-qVpkD~~PQWRkl~WSpD~-tlLa~a~S~G~i~vfdl~g~~-l 77 (282)
T PF15492_consen 3 LALSSDGKLLAI-LQDQCIEIRSAKDDF-SSIIGKC-QVPKDPNPQWRKLAWSPDC-TLLAYAESTGTIRVFDLMGSE-L 77 (282)
T ss_pred eeecCCCcEEEE-EeccEEEEEeccCCc-hheeEEE-ecCCCCCchheEEEECCCC-cEEEEEcCCCeEEEEecccce-e
Confidence 356788887765 345556654433211 0000000 0111112223458899976 589999999999999997533 2
Q ss_pred EEeCCcc-ccC-CccceEEEEEeCCC-----CeEEEEecCCCeEEEEeCCC--cc--c--ceEEeec-cccceeEEEEec
Q 024451 83 SVFGGEF-QSG-HTADVLSVSISGSN-----SRMFVSGSCDSTARLWDTRV--AS--R--AVRTFHG-HEGDVNTVKFFP 148 (267)
Q Consensus 83 ~~~~~~~-~~~-~~~~i~~~~~~~~~-----~~~~~s~~~d~~i~iwd~~~--~~--~--~~~~~~~-~~~~i~~~~~~~ 148 (267)
..++... ..+ -...|..+.|.+.. ...++.-..+|.++-+-+.. .. . ...++.. +...|.++.++|
T Consensus 78 f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p 157 (282)
T PF15492_consen 78 FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP 157 (282)
T ss_pred EEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcC
Confidence 2332111 111 12344455554332 22455556677766554311 11 1 1122322 356799999999
Q ss_pred CCCEEEEeeCC-Cc----------EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCcc
Q 024451 149 DGNRFGTGSDD-GT----------CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA 217 (267)
Q Consensus 149 ~~~~l~~~~~d-~~----------i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~ 217 (267)
..++|+.||.. .. +.-|.+-++.. ....+. +-+...-......+ +|.+...
T Consensus 158 ~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~P--------------yyk~v~-~~~~~~~~~~~~~~---~~~~~~~ 219 (282)
T PF15492_consen 158 KHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSP--------------YYKQVT-SSEDDITASSKRRG---LLRIPSF 219 (282)
T ss_pred CCCEEEEeccCCCCCccccccccCceEEEEcCCCC--------------cEEEcc-ccCccccccccccc---eeeccce
Confidence 98888777632 21 22222221111 000000 11111111111111 2222111
Q ss_pred ceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCceEe
Q 024451 218 KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGYRR 265 (267)
Q Consensus 218 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~~~ 265 (267)
+.. ..+..-...|..+..||||+.||+...+|.|.+|++-.++.
T Consensus 220 ~~f----s~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~ 263 (282)
T PF15492_consen 220 KFF----SRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRL 263 (282)
T ss_pred eee----eccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchh
Confidence 111 11122456799999999999999999999999999866653
No 296
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.58 E-value=5.6e-08 Score=84.76 Aligned_cols=207 Identities=22% Similarity=0.294 Sum_probs=132.9
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCC-eEEEEeCCCC-
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQ-TCVLWDITTG- 79 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~-~v~iwd~~~~- 79 (267)
||+|+-+.++|+.|+-.|.|++|++.... ......+|..+|+-+..+.++...|.+++... -..+|++.+.
T Consensus 1106 c~afs~~~~hL~vG~~~Geik~~nv~sG~-------~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~ 1178 (1516)
T KOG1832|consen 1106 CIAFSGGTNHLAVGSHAGEIKIFNVSSGS-------MEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTG 1178 (1516)
T ss_pred eEEeecCCceEEeeeccceEEEEEccCcc-------ccccccccccccccccccCCcceeeeeccccCchHHHhcccccc
Confidence 68899999999999999999999987643 34567899999999998888877676666665 4678998642
Q ss_pred eeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEee---ccccceeEEEEecCCCEEEEe
Q 024451 80 LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH---GHEGDVNTVKFFPDGNRFGTG 156 (267)
Q Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~ 156 (267)
.....| ..-.++.|+...... +.|..-....+||+.+......-+. +....=+++.|+|+.+++.
T Consensus 1179 ~~~Hsf---------~ed~~vkFsn~~q~r-~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl-- 1246 (1516)
T KOG1832|consen 1179 GPRHSF---------DEDKAVKFSNSLQFR-ALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL-- 1246 (1516)
T ss_pred Cccccc---------cccceeehhhhHHHH-HhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe--
Confidence 222221 122456666432222 3344445788999976443222222 2222337789999877664
Q ss_pred eCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEE
Q 024451 157 SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITC 236 (267)
Q Consensus 157 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~ 236 (267)
.|| -+||.+..+.+..+-+ .... -.-.|+|+|.-++.-+ -|||+++.+.+..+..+.. ..
T Consensus 1247 -ndG--vLWDvR~~~aIh~FD~-ft~~-----~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~Ldq------c~ 1306 (1516)
T KOG1832|consen 1247 -NDG--VLWDVRIPEAIHRFDQ-FTDY-----GGGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPSLDQ------CA 1306 (1516)
T ss_pred -eCc--eeeeeccHHHHhhhhh-heec-----ccccccCCCceEEeec-----hhhhhHHHHHHhcCccccc------eE
Confidence 344 4699987654433321 1111 1225899998888765 5899999887766543321 34
Q ss_pred EEECCCCCeEE
Q 024451 237 LGLSADGSALC 247 (267)
Q Consensus 237 ~~~~p~~~~l~ 247 (267)
+.|+..|..+.
T Consensus 1307 VtFNstG~VmY 1317 (1516)
T KOG1832|consen 1307 VTFNSTGDVMY 1317 (1516)
T ss_pred EEeccCccchh
Confidence 66776666543
No 297
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.56 E-value=6.9e-05 Score=69.04 Aligned_cols=228 Identities=16% Similarity=0.212 Sum_probs=135.9
Q ss_pred ceeeCCCCCeEEEccC------CCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeC---CCeEE
Q 024451 2 TCAFSPTGQSVACGGL------DSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG---DQTCV 72 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~------d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~---d~~v~ 72 (267)
.++|..||.++|+.+. -..+|||+.+... ..+-..-.+--.+++|-|++ +++|+... ...|.
T Consensus 214 ~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L--------~stSE~v~gLe~~l~WrPsG-~lIA~~q~~~~~~~Vv 284 (928)
T PF04762_consen 214 RISWRGDGEYFAVSSVEPETGSRRVIRVYSREGEL--------QSTSEPVDGLEGALSWRPSG-NLIASSQRLPDRHDVV 284 (928)
T ss_pred EEEECCCCcEEEEEEEEcCCCceeEEEEECCCceE--------EeccccCCCccCCccCCCCC-CEEEEEEEcCCCcEEE
Confidence 4789999999998775 2689999976321 11111112223467899976 56766543 34566
Q ss_pred EEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccce---EEee-ccccceeEEEEec
Q 024451 73 LWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV---RTFH-GHEGDVNTVKFFP 148 (267)
Q Consensus 73 iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~---~~~~-~~~~~i~~~~~~~ 148 (267)
+|.-+ |.+-..|...+ ......+..+.|++. ..+++..-.| .|++|-.. .... ..+. .....+..+.|+|
T Consensus 285 FfErN-GLrhgeF~l~~-~~~~~~v~~l~Wn~d-s~iLAv~~~~-~vqLWt~~--NYHWYLKqei~~~~~~~~~~~~Wdp 358 (928)
T PF04762_consen 285 FFERN-GLRHGEFTLRF-DPEEEKVIELAWNSD-SEILAVWLED-RVQLWTRS--NYHWYLKQEIRFSSSESVNFVKWDP 358 (928)
T ss_pred EEecC-CcEeeeEecCC-CCCCceeeEEEECCC-CCEEEEEecC-CceEEEee--CCEEEEEEEEEccCCCCCCceEECC
Confidence 67643 44444444333 235667899999964 4566655544 49999754 2221 1121 1223355599999
Q ss_pred C-CCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeeccccc
Q 024451 149 D-GNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ 227 (267)
Q Consensus 149 ~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~ 227 (267)
. ...|...+.++.+..+++.-. .. ... ..+|+..-+++.-....+.+-+.+..-.+..+....
T Consensus 359 e~p~~L~v~t~~g~~~~~~~~~~----v~---~s~---------~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~ 422 (928)
T PF04762_consen 359 EKPLRLHVLTSNGQYEIYDFAWD----VS---RSP---------GSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYE 422 (928)
T ss_pred CCCCEEEEEecCCcEEEEEEEEE----EE---ecC---------CCCccCceEEEEEeCCeEEEecccccCCCchHhceE
Confidence 5 455777777778777765310 00 000 012233333344344566666665544444444333
Q ss_pred CCccceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451 228 NSHEGRITCLGLSADGSALCTGSWDTNLKIWAF 260 (267)
Q Consensus 228 ~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~ 260 (267)
-....+|.+++|++++..+|+-..||.+.+|..
T Consensus 423 l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~ 455 (928)
T PF04762_consen 423 LELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEW 455 (928)
T ss_pred EcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEe
Confidence 345678999999999888888889999999984
No 298
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=1.8e-06 Score=70.08 Aligned_cols=202 Identities=12% Similarity=0.039 Sum_probs=131.9
Q ss_pred CCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeC-CCeEEEEeCCCCeeEEEeC
Q 024451 8 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG-DQTCVLWDITTGLRTSVFG 86 (267)
Q Consensus 8 ~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-d~~v~iwd~~~~~~~~~~~ 86 (267)
-.+++.+++.||.++-|--..-. + ......+..|.+.|.++..+.++ .++.|.+. |..+|++|+++-.-...+.
T Consensus 19 ka~fiiqASlDGh~KFWkKs~is---G-vEfVKhFraHL~~I~sl~~S~dg-~L~~Sv~d~Dhs~KvfDvEn~DminmiK 93 (558)
T KOG0882|consen 19 KAKFIIQASLDGHKKFWKKSRIS---G-VEFVKHFRAHLGVILSLAVSYDG-WLFRSVEDPDHSVKVFDVENFDMINMIK 93 (558)
T ss_pred hhheEEeeecchhhhhcCCCCcc---c-eeehhhhHHHHHHHHhhhccccc-eeEeeccCcccceeEEEeeccchhhhcc
Confidence 34789999999999999643211 1 23456678899999888877654 56777676 9999999987543222222
Q ss_pred CccccCCccceEEEEEeCCCC----eEEEEecCCCeEEEEeCCCcccce-EEeeccccceeEEEEecCCCEEEEeeCCCc
Q 024451 87 GEFQSGHTADVLSVSISGSNS----RMFVSGSCDSTARLWDTRVASRAV-RTFHGHEGDVNTVKFFPDGNRFGTGSDDGT 161 (267)
Q Consensus 87 ~~~~~~~~~~i~~~~~~~~~~----~~~~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 161 (267)
....++. +.|....+ .+.++.-.++.+.++|-....... ..-.-|..+|..+.+.|.+..+++.-..|.
T Consensus 94 L~~lPg~------a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gm 167 (558)
T KOG0882|consen 94 LVDLPGF------AEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGM 167 (558)
T ss_pred cccCCCc------eEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccce
Confidence 2221111 11221111 233444567889999876544222 233458899999999999999999989999
Q ss_pred EEEEeCCCC-e---eeEEEEeecC------CCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCcccee
Q 024451 162 CRLFDIRTG-H---QLQVYYQQHG------ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVV 220 (267)
Q Consensus 162 i~iwd~~~~-~---~~~~~~~~~~------~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~ 220 (267)
|.-|..... + ....+.-.+. ..-.....++.|+|++..+.+-..|..|++++..+++..
T Consensus 168 VEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklv 236 (558)
T KOG0882|consen 168 VEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLV 236 (558)
T ss_pred eEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhh
Confidence 999987631 0 0000000000 001234689999999999999889999999998777654
No 299
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.51 E-value=4.4e-05 Score=63.79 Aligned_cols=178 Identities=18% Similarity=0.135 Sum_probs=101.2
Q ss_pred eEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCcc-----ce-EEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEe
Q 024451 61 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTA-----DV-LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF 134 (267)
Q Consensus 61 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~-----~i-~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~ 134 (267)
.++.+..++.+..+|.+++............+... .+ .+..+. + ..+..++.+|.+..+|.+.... .-..
T Consensus 192 ~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~--~-~~vy~~~~~g~l~a~d~~tG~~-~W~~ 267 (377)
T TIGR03300 192 GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVD--G-GQVYAVSYQGRVAALDLRSGRV-LWKR 267 (377)
T ss_pred EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEE--C-CEEEEEEcCCEEEEEECCCCcE-EEee
Confidence 46777888999999998886554322110000000 00 011121 2 3455677789999999875432 2222
Q ss_pred eccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeC
Q 024451 135 HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT 214 (267)
Q Consensus 135 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~ 214 (267)
. .. ...... ..+..++.++.||.+..+|..+++.+..... .. .....+.. ..+..+++++.+|.|+++|.
T Consensus 268 ~-~~-~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~--~~--~~~~ssp~--i~g~~l~~~~~~G~l~~~d~ 337 (377)
T TIGR03300 268 D-AS-SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDE--LK--YRQLTAPA--VVGGYLVVGDFEGYLHWLSR 337 (377)
T ss_pred c-cC-CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEcccc--cc--CCccccCE--EECCEEEEEeCCCEEEEEEC
Confidence 1 11 111122 2456788888999999999998875432211 01 01111111 14678899999999999999
Q ss_pred CccceeeecccccCCccceEEE-EEECCCCCeEEEeECCCcEEEE
Q 024451 215 LLAKVVLNLGSLQNSHEGRITC-LGLSADGSALCTGSWDTNLKIW 258 (267)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~v~~-~~~~p~~~~l~sgs~dg~i~~w 258 (267)
.+++.+.... .+...+.. ..+ .+ +.|..++.||.|..|
T Consensus 338 ~tG~~~~~~~----~~~~~~~~sp~~-~~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 338 EDGSFVARLK----TDGSGIASPPVV-VG-DGLLVQTRDGDLYAF 376 (377)
T ss_pred CCCCEEEEEE----cCCCccccCCEE-EC-CEEEEEeCCceEEEe
Confidence 8888765542 22222221 222 23 457778899988765
No 300
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=4.2e-06 Score=67.99 Aligned_cols=208 Identities=14% Similarity=0.133 Sum_probs=132.4
Q ss_pred CCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecC-CCeEEEE
Q 024451 44 GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSC-DSTARLW 122 (267)
Q Consensus 44 ~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~-d~~i~iw 122 (267)
.|++.|+.|.... ..++++++.||.++.|.-..-. ...+... ...|-..+.+++.+- ++.++.|.+. |..+|++
T Consensus 7 mhrd~i~hv~~tk--a~fiiqASlDGh~KFWkKs~is-GvEfVKh-FraHL~~I~sl~~S~-dg~L~~Sv~d~Dhs~Kvf 81 (558)
T KOG0882|consen 7 MHRDVITHVFPTK--AKFIIQASLDGHKKFWKKSRIS-GVEFVKH-FRAHLGVILSLAVSY-DGWLFRSVEDPDHSVKVF 81 (558)
T ss_pred cccceeeeEeeeh--hheEEeeecchhhhhcCCCCcc-ceeehhh-hHHHHHHHHhhhccc-cceeEeeccCcccceeEE
Confidence 4888888876544 4689999999999999753211 1112111 135777777777663 4567788676 9999999
Q ss_pred eCCCcccceEEee-ccccceeEEEEecCC--CEE-EEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCC
Q 024451 123 DTRVASRAVRTFH-GHEGDVNTVKFFPDG--NRF-GTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR 198 (267)
Q Consensus 123 d~~~~~~~~~~~~-~~~~~i~~~~~~~~~--~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 198 (267)
|+.... .+..++ ..-...-+...+|.. ..+ ++.-.++.+.++|-....+...++. ..+..+|..+.+.+.+.
T Consensus 82 DvEn~D-minmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fk---klH~sPV~~i~y~qa~D 157 (558)
T KOG0882|consen 82 DVENFD-MINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFK---KLHFSPVKKIRYNQAGD 157 (558)
T ss_pred Eeeccc-hhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceec---ccccCceEEEEeecccc
Confidence 986422 111111 111112222223321 123 3345789999999876554333332 23445799999999999
Q ss_pred EEEEEEeCCeEEEEeCCc-cc-----eeeec------ccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451 199 LLFAGYSNGDCYVWDTLL-AK-----VVLNL------GSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG 261 (267)
Q Consensus 199 ~l~~g~~dg~i~i~d~~~-~~-----~~~~~------~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~ 261 (267)
.+++....|.|.-|.... .+ ...++ ... ........++.|+|+|..+.+-+.|..|+++.+-
T Consensus 158 s~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f-~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~K 231 (558)
T KOG0882|consen 158 SAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGF-PKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFK 231 (558)
T ss_pred ceeeccccceeEeecCCCcccCccccccccccccchhhcc-cccccCccceEEccccCcccccCcccEEEEEEec
Confidence 999999999999998763 11 11111 011 1123456889999999999998999999999763
No 301
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.48 E-value=3.3e-05 Score=70.09 Aligned_cols=236 Identities=14% Similarity=0.197 Sum_probs=125.7
Q ss_pred eeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCC----C
Q 024451 3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDIT----T 78 (267)
Q Consensus 3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~----~ 78 (267)
..|..++..+..+...|.+.+-|.... .....-.-.+.|.+.+|+|++ +.++..+.++++.+-... .
T Consensus 74 ~~fl~d~~~i~v~~~~G~iilvd~et~--------~~eivg~vd~GI~aaswS~De-e~l~liT~~~tll~mT~~f~~i~ 144 (1265)
T KOG1920|consen 74 VQFLADTNSICVITALGDIILVDPETL--------ELEIVGNVDNGISAASWSPDE-ELLALITGRQTLLFMTKDFEPIA 144 (1265)
T ss_pred EEEecccceEEEEecCCcEEEEccccc--------ceeeeeeccCceEEEeecCCC-cEEEEEeCCcEEEEEeccccchh
Confidence 456667777888888888888876541 112222335678999999976 477778888887655431 1
Q ss_pred CeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEee-
Q 024451 79 GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS- 157 (267)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~- 157 (267)
.++. ..+ .-.......+-|-....++ -| ..|.....+.....+.......+. .=.++.|.-||++||+..
T Consensus 145 E~~L---~~d--~~~~sk~v~VGwGrkeTqf--rg-s~gr~~~~~~~~~ek~~~~~~~~~-~~~~IsWRgDg~~fAVs~~ 215 (1265)
T KOG1920|consen 145 EKPL---DAD--DERKSKFVNVGWGRKETQF--RG-SEGRQAARQKIEKEKALEQIEQDD-HKTSISWRGDGEYFAVSFV 215 (1265)
T ss_pred cccc---ccc--cccccccceecccccceee--ec-chhhhcccccccccccccchhhcc-CCceEEEccCCcEEEEEEE
Confidence 1111 000 0000111112221111111 11 111111111111111111111111 124689999999998732
Q ss_pred ---CC-CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEE---eCCeEEEEeCCccceeeeccccc-CC
Q 024451 158 ---DD-GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY---SNGDCYVWDTLLAKVVLNLGSLQ-NS 229 (267)
Q Consensus 158 ---~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~---~dg~i~i~d~~~~~~~~~~~~~~-~~ 229 (267)
.+ ++|++||.+ +.. ... ......--.+++|-|.|..+++-. +++.|.+|.....+ +.-..++ ..
T Consensus 216 ~~~~~~RkirV~drE-g~L-ns~----se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~--hg~f~l~~p~ 287 (1265)
T KOG1920|consen 216 ESETGTRKIRVYDRE-GAL-NST----SEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLR--HGEFVLPFPL 287 (1265)
T ss_pred eccCCceeEEEeccc-chh-hcc----cCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcc--ccccccCCcc
Confidence 34 899999976 321 111 111112236889999999998853 45678888742211 1100111 12
Q ss_pred ccceEEEEEECCCCCeEEE---eECCCcEEEEecCceE
Q 024451 230 HEGRITCLGLSADGSALCT---GSWDTNLKIWAFGGYR 264 (267)
Q Consensus 230 ~~~~v~~~~~~p~~~~l~s---gs~dg~i~~w~~~~~~ 264 (267)
...++..++|+.++..||. ......|++|.+++++
T Consensus 288 de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 288 DEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred cccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence 2344999999999999997 4444559999987765
No 302
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.47 E-value=0.00031 Score=54.55 Aligned_cols=189 Identities=17% Similarity=0.151 Sum_probs=109.3
Q ss_pred eeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeecccc
Q 024451 60 THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEG 139 (267)
Q Consensus 60 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 139 (267)
..+++++.++.|..||..+++....+.... ..... ... .+++ ++.+..++.+..+|.+.+............
T Consensus 37 ~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~--~~~~~---~~~--~~~~-v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~ 108 (238)
T PF13360_consen 37 GRVYVASGDGNLYALDAKTGKVLWRFDLPG--PISGA---PVV--DGGR-VYVGTSDGSLYALDAKTGKVLWSIYLTSSP 108 (238)
T ss_dssp TEEEEEETTSEEEEEETTTSEEEEEEECSS--CGGSG---EEE--ETTE-EEEEETTSEEEEEETTTSCEEEEEEE-SSC
T ss_pred CEEEEEcCCCEEEEEECCCCCEEEEeeccc--cccce---eee--cccc-cccccceeeeEecccCCcceeeeecccccc
Confidence 357777899999999999998766554211 11111 112 2333 445557779999997765543332222211
Q ss_pred ---ceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCc------EEEEEEccCCCEEEEEEeCCeEE
Q 024451 140 ---DVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPH------VTSIAFSISGRLLFAGYSNGDCY 210 (267)
Q Consensus 140 ---~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~------v~~~~~s~~~~~l~~g~~dg~i~ 210 (267)
..........++.++.+..++.+..+|.++++.+....... ...... +..-....++ .++.+..+|.+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~ 186 (238)
T PF13360_consen 109 PAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGE-PRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVV 186 (238)
T ss_dssp TCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESST-T-SS--EEEETTEEEEEECCTT-EEEEECCTSSEE
T ss_pred ccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCC-CCCCcceeeecccccceEEECC-EEEEEcCCCeEE
Confidence 11222233347888888889999999999998866543311 111111 1122222344 676777777533
Q ss_pred EEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCceEe
Q 024451 211 VWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGYRR 265 (267)
Q Consensus 211 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~~~ 265 (267)
-+|..+++...... ...+..+ ..+++..|+.++.++.+..||...-+.
T Consensus 187 ~~d~~tg~~~w~~~------~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 187 AVDLATGEKLWSKP------ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp EEETTTTEEEEEEC------SS-ECEC-EECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred EEECCCCCEEEEec------CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence 34988887553221 1112221 346778888888999999999765543
No 303
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.47 E-value=4e-08 Score=82.69 Aligned_cols=197 Identities=17% Similarity=0.227 Sum_probs=122.2
Q ss_pred CeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEee----CCCeEEEEeCCCCeeEEEe
Q 024451 10 QSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS----GDQTCVLWDITTGLRTSVF 85 (267)
Q Consensus 10 ~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~----~d~~v~iwd~~~~~~~~~~ 85 (267)
-.++.|..+|.|.+=.+..+... -.....+|..+.++++|++-+..+||.|- .|..+.|||+.++.....-
T Consensus 71 cIlavG~atG~I~l~s~r~~hdS-----s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke 145 (783)
T KOG1008|consen 71 CILAVGSATGNISLLSVRHPHDS-----SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKE 145 (783)
T ss_pred hhhhhccccCceEEeecCCcccc-----cceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCcc
Confidence 46778888999998887653322 12345678889999999987666666552 2556999999876221111
Q ss_pred CCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEec-CCCEEEEeeCCCcEEE
Q 024451 86 GGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP-DGNRFGTGSDDGTCRL 164 (267)
Q Consensus 86 ~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i 164 (267)
...+..+......+++|. .+.+++++|.....+.++|++........+ ....+..+...| .++|+++-. |+.|-+
T Consensus 146 ~~~fs~~~l~gqns~cwl-rd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs~~-dg~iAi 221 (783)
T KOG1008|consen 146 SPLFSSSTLDGQNSVCWL-RDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCSNS-DGDIAI 221 (783)
T ss_pred ccccccccccCccccccc-cCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceeccc-cCceee
Confidence 111111233345578887 567888888888899999998533222222 233456677788 677887655 999999
Q ss_pred EeC-CCCeeeEEEEeecCCCCCCcEEEEEEccCCCEE-EEEE-eCCeEEEEeCC
Q 024451 165 FDI-RTGHQLQVYYQQHGENEIPHVTSIAFSISGRLL-FAGY-SNGDCYVWDTL 215 (267)
Q Consensus 165 wd~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~g~-~dg~i~i~d~~ 215 (267)
||. +.-+.......+........+..++|.|...-+ ++.. ..+.|++||+.
T Consensus 222 wD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 222 WDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred ccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 994 321111111111111122357889999876533 3333 45799999864
No 304
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.47 E-value=3.9e-05 Score=66.75 Aligned_cols=179 Identities=15% Similarity=0.166 Sum_probs=115.2
Q ss_pred CCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCc
Q 024451 9 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE 88 (267)
Q Consensus 9 g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~ 88 (267)
+++++-|.-+|.+++++.... . ++...|... ..++.+++|||.||+|.|-.+.+......+.
T Consensus 49 ~~~~~~GtH~g~v~~~~~~~~--------~-~~~~~~s~~-------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-- 110 (846)
T KOG2066|consen 49 DKFFALGTHRGAVYLTTCQGN--------P-KTNFDHSSS-------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-- 110 (846)
T ss_pred cceeeeccccceEEEEecCCc--------c-ccccccccc-------ccCCceEEEecCCCcEEEeeccCCccceeEe--
Confidence 578899999999999987642 1 223334332 2345799999999999998887765444332
Q ss_pred cccCCccceEEEEEeCC----CCeEEEEecCCCeEEEEeCCCccc-ceEEeeccccceeEEEEecCCCEEEEeeCCCcEE
Q 024451 89 FQSGHTADVLSVSISGS----NSRMFVSGSCDSTARLWDTRVASR-AVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCR 163 (267)
Q Consensus 89 ~~~~~~~~i~~~~~~~~----~~~~~~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~ 163 (267)
-..++.+++++|. ..+++++||.-| +.++.-+-.+. ....+..-.++|.++.|. |+++|=+. |--|+
T Consensus 111 ----f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWan-d~Gv~ 182 (846)
T KOG2066|consen 111 ----FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWAN-DDGVK 182 (846)
T ss_pred ----cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEec-CCCcE
Confidence 3457888888875 346789999988 77776432221 112344557899999996 55666544 55799
Q ss_pred EEeCCCCeeeEEEEeecCCCC-CCcEEEEEEccCCCEEEEEEeCCeEEEEeCC
Q 024451 164 LFDIRTGHQLQVYYQQHGENE-IPHVTSIAFSISGRLLFAGYSNGDCYVWDTL 215 (267)
Q Consensus 164 iwd~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~ 215 (267)
+||+.+.+.+..+...+.... ......+.|.++ ..|+.|..| .|++...+
T Consensus 183 vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~-~~LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 183 VYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDE-DRLVIGWGD-SVKICSIK 233 (846)
T ss_pred EEeccccceeeccCCCCCCCCcccCCCceEecCC-CeEEEecCC-eEEEEEEe
Confidence 999988877655433322111 112346677654 456667655 45666554
No 305
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.46 E-value=6.6e-05 Score=65.31 Aligned_cols=237 Identities=18% Similarity=0.203 Sum_probs=145.6
Q ss_pred eeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCC-----------CeeEEEeeCCCeE
Q 024451 3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDE-----------DTHLITSSGDQTC 71 (267)
Q Consensus 3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-----------~~~l~s~~~d~~v 71 (267)
..|+|.|- ++-|+- ..|.+-|... ......+.-|...|+.++|.|.. ...|+++.-.|.|
T Consensus 21 ~Dw~~~GL-iAygsh-slV~VVDs~s-------~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrI 91 (1062)
T KOG1912|consen 21 ADWSPSGL-IAYGSH-SLVSVVDSRS-------LQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRI 91 (1062)
T ss_pred cccCccce-EEEecC-ceEEEEehhh-------hhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcE
Confidence 45777665 555553 3577777653 23556677899999999997631 2356777778999
Q ss_pred EEEeCCCCeeEEEeCCccccCCccceEEEEEeCC--CC-eEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEec
Q 024451 72 VLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS--NS-RMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFP 148 (267)
Q Consensus 72 ~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~-~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~ 148 (267)
.+||...+..+.-+ +.|.+.+..++|.+. .. .+++.-.....+.+|+..++.+..+.--+| ....|+.+.|
T Consensus 92 il~d~~~~s~~~~l-----~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~-~iLs~f~~DP 165 (1062)
T KOG1912|consen 92 ILVDFVLASVINWL-----SHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSH-EILSCFRVDP 165 (1062)
T ss_pred EEEEehhhhhhhhh-----cCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCC-cceeeeeeCC
Confidence 99999876544333 457777888887653 22 344554556689999987666544433333 3567788888
Q ss_pred -CCCEEEEeeCCCcEEEEeCCCC-------eeeEEEEeecCC-----------C-CCC---------cEEEEEEccCCCE
Q 024451 149 -DGNRFGTGSDDGTCRLFDIRTG-------HQLQVYYQQHGE-----------N-EIP---------HVTSIAFSISGRL 199 (267)
Q Consensus 149 -~~~~l~~~~~d~~i~iwd~~~~-------~~~~~~~~~~~~-----------~-~~~---------~v~~~~~s~~~~~ 199 (267)
+..+|..-+..|.+.+-+.... +..+.. ..+.. + ... ....++|+|.-+.
T Consensus 166 fd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~-sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn 244 (1062)
T KOG1912|consen 166 FDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQIT-SDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRN 244 (1062)
T ss_pred CCcceEEEEccCceEEEEeccCCCCCCCCceeEEEe-cCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhc
Confidence 5667766666777776664321 222111 11100 0 000 1224567887665
Q ss_pred EEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCC--CCeEEEeECCCcEEEEe
Q 024451 200 LFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD--GSALCTGSWDTNLKIWA 259 (267)
Q Consensus 200 l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~l~sgs~dg~i~~w~ 259 (267)
++--.-.+.+.++|++....+.... ++ .+.+.-+.+-|+ ...|.+.-.||.+.+|.
T Consensus 245 ~lfi~~prellv~dle~~~~l~vvp-ie---r~~akfv~vlP~~~rd~LfclH~nG~ltirv 302 (1062)
T KOG1912|consen 245 ILFITFPRELLVFDLEYECCLAVVP-IE---RGGAKFVDVLPDPRRDALFCLHSNGRLTIRV 302 (1062)
T ss_pred eEEEEeccceEEEcchhhceeEEEE-ec---cCCcceeEeccCCCcceEEEEecCCeEEEEE
Confidence 5555567889999987665543331 11 122334556665 45788889999999995
No 306
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.46 E-value=8e-06 Score=71.87 Aligned_cols=183 Identities=18% Similarity=0.294 Sum_probs=119.8
Q ss_pred CCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCC
Q 024451 8 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGG 87 (267)
Q Consensus 8 ~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 87 (267)
++..++-||--..+..+|+.... ..+...-..+.|+-++. +.+++++|...|+|.+=|..+-+.+..+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~-------e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~-- 213 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEK-------ETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTF-- 213 (1118)
T ss_pred CCcceeecchhhheeeeecccce-------eeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeee--
Confidence 34455555555556666664311 22222112223544443 4468999999999999999887777766
Q ss_pred ccccCCccceEEEEEeCCCCeEEEEecC---------CCeEEEEeCCCcccceEEeeccccceeEEEEecC-CCEEEEee
Q 024451 88 EFQSGHTADVLSVSISGSNSRMFVSGSC---------DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD-GNRFGTGS 157 (267)
Q Consensus 88 ~~~~~~~~~i~~~~~~~~~~~~~~s~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~ 157 (267)
..|++.+..+++. +++++++|. |..|+|||+|+.+ .+..+.-+.++ .-+.|+|. ...+++++
T Consensus 214 ---~aHs~siSDfDv~---GNlLitCG~S~R~~~l~~D~FvkVYDLRmmr-al~PI~~~~~P-~flrf~Psl~t~~~V~S 285 (1118)
T KOG1275|consen 214 ---DAHSGSISDFDVQ---GNLLITCGYSMRRYNLAMDPFVKVYDLRMMR-ALSPIQFPYGP-QFLRFHPSLTTRLAVTS 285 (1118)
T ss_pred ---eccccceeeeecc---CCeEEEeecccccccccccchhhhhhhhhhh-ccCCcccccCc-hhhhhcccccceEEEEe
Confidence 3688888887764 456777653 7789999998643 23333333333 45778885 56788889
Q ss_pred CCCcEEEEeCCCCeee--EEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEe
Q 024451 158 DDGTCRLFDIRTGHQL--QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD 213 (267)
Q Consensus 158 ~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d 213 (267)
..|...+-|..+.... ..+.. + .....+..+++|++++.++.|..+|.|.+|-
T Consensus 286 ~sGq~q~vd~~~lsNP~~~~~~v-~--p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 286 QSGQFQFVDTATLSNPPAGVKMV-N--PNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cccceeeccccccCCCccceeEE-c--cCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 9999999994332111 11111 1 1223489999999999999999999999997
No 307
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.45 E-value=0.00037 Score=58.23 Aligned_cols=184 Identities=16% Similarity=0.141 Sum_probs=103.1
Q ss_pred eEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccc-c
Q 024451 61 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE-G 139 (267)
Q Consensus 61 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~ 139 (267)
.++.++.++.|..||.++++.+..+.............+..+. + ..++.+..++.+..+|.+.+......-.... +
T Consensus 147 ~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g 223 (377)
T TIGR03300 147 LVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKG 223 (377)
T ss_pred EEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--C-CEEEEECCCCEEEEEEccCCCEeeeeccccCCC
Confidence 5667778999999999988765554321100000000111122 2 2456677788899888765432221100000 0
Q ss_pred --ce---eEEEEec--CCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEE
Q 024451 140 --DV---NTVKFFP--DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVW 212 (267)
Q Consensus 140 --~i---~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~ 212 (267)
.+ ..+.-+| .+..+..++.++.+..+|.++++...... . .. ... ....+..+++++.+|.++.+
T Consensus 224 ~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~--~-~~----~~~--p~~~~~~vyv~~~~G~l~~~ 294 (377)
T TIGR03300 224 RTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRD--A-SS----YQG--PAVDDNRLYVTDADGVVVAL 294 (377)
T ss_pred CCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeec--c-CC----ccC--ceEeCCEEEEECCCCeEEEE
Confidence 00 0011111 24577778889999999999887553321 1 11 111 12346678888899999999
Q ss_pred eCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451 213 DTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG 261 (267)
Q Consensus 213 d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~ 261 (267)
|..+++.+.+...+. .....+... .+..|++++.||.+.+++..
T Consensus 295 d~~tG~~~W~~~~~~---~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~ 338 (377)
T TIGR03300 295 DRRSGSELWKNDELK---YRQLTAPAV--VGGYLVVGDFEGYLHWLSRE 338 (377)
T ss_pred ECCCCcEEEcccccc---CCccccCEE--ECCEEEEEeCCCEEEEEECC
Confidence 998887665432111 111111122 36688889999999998863
No 308
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.43 E-value=0.0006 Score=55.77 Aligned_cols=233 Identities=13% Similarity=0.008 Sum_probs=115.5
Q ss_pred CeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEee---------CCCeEEEEeCCCCeeEEEeCCcc
Q 024451 19 SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS---------GDQTCVLWDITTGLRTSVFGGEF 89 (267)
Q Consensus 19 ~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~---------~d~~v~iwd~~~~~~~~~~~~~~ 89 (267)
+++.+.|.... +...++..-..+-. + ++|++..+.++.+ .+..|.+||..+.+....+....
T Consensus 27 ~~v~ViD~~~~-------~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~ 97 (352)
T TIGR02658 27 TQVYTIDGEAG-------RVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPE 97 (352)
T ss_pred ceEEEEECCCC-------EEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCC
Confidence 88999997652 12232222122222 3 7888776666666 68999999999987766554210
Q ss_pred c--cCCccceEEEEEeCCCCeEEEEecC-CCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEe
Q 024451 90 Q--SGHTADVLSVSISGSNSRMFVSGSC-DSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFD 166 (267)
Q Consensus 90 ~--~~~~~~i~~~~~~~~~~~~~~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd 166 (267)
. ...-.....+.+++.+..++++--. +..|.+.|+.. .+.+..+.-. +...-...+ +.. +..-+.||......
T Consensus 98 ~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~-~kvv~ei~vp-~~~~vy~t~-e~~-~~~~~~Dg~~~~v~ 173 (352)
T TIGR02658 98 GPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEG-KAFVRMMDVP-DCYHIFPTA-NDT-FFMHCRDGSLAKVG 173 (352)
T ss_pred CchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCC-CcEEEEEeCC-CCcEEEEec-CCc-cEEEeecCceEEEE
Confidence 0 0011122355667654444444423 78899999874 4445444321 111111111 111 11224455544433
Q ss_pred CCCCeeeEEEEeecCCCCCCcE-EEEEEcc-CCCEEEEEEeCCeEEEEeCCcc-----ceeeeccccc---CCccceEEE
Q 024451 167 IRTGHQLQVYYQQHGENEIPHV-TSIAFSI-SGRLLFAGYSNGDCYVWDTLLA-----KVVLNLGSLQ---NSHEGRITC 236 (267)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~v-~~~~~s~-~~~~l~~g~~dg~i~i~d~~~~-----~~~~~~~~~~---~~~~~~v~~ 236 (267)
+.+......-..........++ ..-.|++ ++..+.+.++ |.|++.|+... +....+..-. .-..+.+.-
T Consensus 174 ~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ 252 (352)
T TIGR02658 174 YGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQ 252 (352)
T ss_pred ecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCccee
Confidence 3322111100000000000000 0003455 8888888877 99999995332 2111110000 001233445
Q ss_pred EEECCCCCeEEEeEC----------CCcEEEEecCceEe
Q 024451 237 LGLSADGSALCTGSW----------DTNLKIWAFGGYRR 265 (267)
Q Consensus 237 ~~~~p~~~~l~sgs~----------dg~i~~w~~~~~~~ 265 (267)
++++|+++.+..... .+.|.++|...+++
T Consensus 253 ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kv 291 (352)
T TIGR02658 253 VAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKR 291 (352)
T ss_pred EEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeE
Confidence 999999988776432 24688888766654
No 309
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=2e-05 Score=63.32 Aligned_cols=86 Identities=15% Similarity=0.198 Sum_probs=70.3
Q ss_pred cccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCe
Q 024451 39 SRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST 118 (267)
Q Consensus 39 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~ 118 (267)
...+.+|...|..++|+|.+..++..++.++.|+|.|+++......+. .+ ..+.+++|...+.+.+-.|..+|.
T Consensus 186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~-----a~-~~~wSC~wDlde~h~IYaGl~nG~ 259 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYI-----AY-NQIWSCCWDLDERHVIYAGLQNGM 259 (463)
T ss_pred hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehee-----cc-CCceeeeeccCCcceeEEeccCce
Confidence 346778899999999999887788999999999999999876555542 23 678999999877777777889999
Q ss_pred EEEEeCCCcccc
Q 024451 119 ARLWDTRVASRA 130 (267)
Q Consensus 119 i~iwd~~~~~~~ 130 (267)
|.|||++....+
T Consensus 260 VlvyD~R~~~~~ 271 (463)
T KOG1645|consen 260 VLVYDMRQPEGP 271 (463)
T ss_pred EEEEEccCCCch
Confidence 999999876543
No 310
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.41 E-value=1.1e-07 Score=80.14 Aligned_cols=205 Identities=18% Similarity=0.260 Sum_probs=128.9
Q ss_pred eeeEEEEEEecCCC-eeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEe----cCCCeEE
Q 024451 46 KGYVSCCQYVPDED-THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSG----SCDSTAR 120 (267)
Q Consensus 46 ~~~v~~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~----~~d~~i~ 120 (267)
...+.|+++....+ -.++.|..+|.|-+-.+...... ..++.+++...+++++|++-+...+++| -.|..++
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS---s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~ 132 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS---SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLK 132 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccc---cceecccccccccccccccccHHHHHhhhhhhcccCCcc
Confidence 34577777765444 46778889999988877644222 2345577888999999998766666655 3467899
Q ss_pred EEeCCCccc-c--eEEeec-cccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEcc-
Q 024451 121 LWDTRVASR-A--VRTFHG-HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI- 195 (267)
Q Consensus 121 iwd~~~~~~-~--~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~- 195 (267)
|||....-. + --.+.+ ......+++|..+.+.+.+|...+.++++|++......... ....+..+..+|
T Consensus 133 Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv------nTk~vqG~tVdp~ 206 (783)
T KOG1008|consen 133 IWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV------NTKYVQGITVDPF 206 (783)
T ss_pred ceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh------hhhhcccceecCC
Confidence 999864310 1 111222 33456688888888999999999999999998422111000 011355666677
Q ss_pred CCCEEEEEEeCCeEEEEeC-Cccce-eeecccccCCccceEEEEEECCCCC-eEEEeEC-CCcEEEEec
Q 024451 196 SGRLLFAGYSNGDCYVWDT-LLAKV-VLNLGSLQNSHEGRITCLGLSADGS-ALCTGSW-DTNLKIWAF 260 (267)
Q Consensus 196 ~~~~l~~g~~dg~i~i~d~-~~~~~-~~~~~~~~~~~~~~v~~~~~~p~~~-~l~sgs~-dg~i~~w~~ 260 (267)
...++++- .||.+.+||. +.-+. +....+-+......+..++|.|... .|++.+. .++|+++++
T Consensus 207 ~~nY~cs~-~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi 274 (783)
T KOG1008|consen 207 SPNYFCSN-SDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDI 274 (783)
T ss_pred CCCceecc-ccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecc
Confidence 55566555 5999999994 22221 1112111222334689999999643 4455555 467888875
No 311
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.38 E-value=0.00056 Score=53.56 Aligned_cols=194 Identities=18% Similarity=0.184 Sum_probs=115.8
Q ss_pred EEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCccc-c
Q 024451 52 CQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR-A 130 (267)
Q Consensus 52 ~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~-~ 130 (267)
..|.+..+.++++--..+.|..|+..++....... .....+.+...+++++++ ..++ +.++|...... .
T Consensus 5 p~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~--------~~~~G~~~~~~~g~l~v~-~~~~-~~~~d~~~g~~~~ 74 (246)
T PF08450_consen 5 PVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDL--------PGPNGMAFDRPDGRLYVA-DSGG-IAVVDPDTGKVTV 74 (246)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTTTEEEEEES--------SSEEEEEEECTTSEEEEE-ETTC-EEEEETTTTEEEE
T ss_pred eEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEec--------CCCceEEEEccCCEEEEE-EcCc-eEEEecCCCcEEE
Confidence 45677555677777778999999998876543211 115666676445555544 4444 45558764321 1
Q ss_pred eEEee--c-cccceeEEEEecCCCEEEEeeCC--------CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCE
Q 024451 131 VRTFH--G-HEGDVNTVKFFPDGNRFGTGSDD--------GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRL 199 (267)
Q Consensus 131 ~~~~~--~-~~~~i~~~~~~~~~~~l~~~~~d--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 199 (267)
+.... . .....+.+++.|+|++.++.... +.+..++.. ++. ...... ......++|+|+++.
T Consensus 75 ~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~-~~~~~~-----~~~pNGi~~s~dg~~ 147 (246)
T PF08450_consen 75 LADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV-TVVADG-----LGFPNGIAFSPDGKT 147 (246)
T ss_dssp EEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEE-EEEEEE-----ESSEEEEEEETTSSE
T ss_pred EeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeE-EEEecC-----cccccceEECCcchh
Confidence 11121 1 23457899999999977776543 345556655 333 222221 124689999999997
Q ss_pred EEE-EEeCCeEEEEeCCccce-ee---ecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCce
Q 024451 200 LFA-GYSNGDCYVWDTLLAKV-VL---NLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGY 263 (267)
Q Consensus 200 l~~-g~~dg~i~i~d~~~~~~-~~---~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~ 263 (267)
|+. -+..+.|+.|+...... +. .+..+ ....+..-.+++..+|++.++.-..+.|.+++..|.
T Consensus 148 lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~ 215 (246)
T PF08450_consen 148 LYVADSFNGRIWRFDLDADGGELSNRRVFIDF-PGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGK 215 (246)
T ss_dssp EEEEETTTTEEEEEEEETTTCCEEEEEEEEE--SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSC
T ss_pred eeecccccceeEEEeccccccceeeeeeEEEc-CCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCcc
Confidence 764 45678899998753222 11 11111 112235778999999999888777889999987653
No 312
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.37 E-value=4.2e-05 Score=64.53 Aligned_cols=69 Identities=25% Similarity=0.274 Sum_probs=57.0
Q ss_pred CcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451 186 PHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAF 260 (267)
Q Consensus 186 ~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~ 260 (267)
..+.+.+++|+...++.|+.||.|.+||...+-.... ...-..+.++|+|+|.++++|+.-|.+.+||+
T Consensus 260 s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~------ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ 328 (545)
T PF11768_consen 260 SQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA------KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDM 328 (545)
T ss_pred CcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee------eecccceEEEEcCCCcEEEEEcCCceEEEEEe
Confidence 4688999999999999999999999999765432221 12334678999999999999999999999995
No 313
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.36 E-value=0.00022 Score=60.36 Aligned_cols=74 Identities=23% Similarity=0.333 Sum_probs=60.3
Q ss_pred ccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCC
Q 024451 136 GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL 215 (267)
Q Consensus 136 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~ 215 (267)
..+..+.+++++|+.+.++.|+.||+|.+||...+... ..+.. ..++.++|+|+|.++++|+..|++.+||+.
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~-----~~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAE-----FIPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeec-----ccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 45678999999999999999999999999998765322 21111 235889999999999999999999999974
Q ss_pred c
Q 024451 216 L 216 (267)
Q Consensus 216 ~ 216 (267)
.
T Consensus 330 L 330 (545)
T PF11768_consen 330 L 330 (545)
T ss_pred c
Confidence 4
No 314
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.32 E-value=0.00057 Score=60.33 Aligned_cols=201 Identities=13% Similarity=0.127 Sum_probs=120.4
Q ss_pred eeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeee-EEEEEEecCCCeeEEEeeCCC-----eEEEEeCC
Q 024451 4 AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGY-VSCCQYVPDEDTHLITSSGDQ-----TCVLWDIT 77 (267)
Q Consensus 4 ~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~~l~s~~~d~-----~v~iwd~~ 77 (267)
++++.+..++-|+.||.|.+++-.. ...+.++++... |..+- .-.+..+|++-++|+ .|+||+++
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s~--------~~~~~fqa~~~siv~~L~-~~~~~~~L~sv~Ed~~~np~llkiw~le 100 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSSF--------QLIRGFQAYEQSIVQFLY-ILNKQNFLFSVGEDEQGNPVLLKIWDLE 100 (933)
T ss_pred EEcCCCceEEEeeccccEEEecccc--------eeeehheecchhhhhHhh-cccCceEEEEEeecCCCCceEEEEeccc
Confidence 5889999999999999988887432 234556666655 33332 333446888877775 49999996
Q ss_pred CC------eeE---EEeCCccccC-CccceEEEEEeCCCCeEEEEecCCCeEEEEe--CCCcccc-eEEeeccccceeEE
Q 024451 78 TG------LRT---SVFGGEFQSG-HTADVLSVSISGSNSRMFVSGSCDSTARLWD--TRVASRA-VRTFHGHEGDVNTV 144 (267)
Q Consensus 78 ~~------~~~---~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd--~~~~~~~-~~~~~~~~~~i~~~ 144 (267)
.. ... .++.. ..+ -..++.+++++.. -+.++.|-.+|.|..+. +...+.. ......-+.+|+.+
T Consensus 101 k~~~n~sP~c~~~~ri~~~--~np~~~~p~s~l~Vs~~-l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL 177 (933)
T KOG2114|consen 101 KVDKNNSPQCLYEHRIFTI--KNPTNPSPASSLAVSED-LKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGL 177 (933)
T ss_pred ccCCCCCcceeeeeeeecc--CCCCCCCcceEEEEEcc-ccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceee
Confidence 42 111 11111 122 2345567777754 66788888999988873 2111111 11122235689999
Q ss_pred EEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceee
Q 024451 145 KFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVL 221 (267)
Q Consensus 145 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~ 221 (267)
.+..+++.+.-...-..|.+|.+.......... .++.....+..|++....++++. +..+++||....+...
T Consensus 178 ~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~l----d~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cf 249 (933)
T KOG2114|consen 178 ALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVL----DNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCF 249 (933)
T ss_pred EEecCCceeEEEEecceeEEEEecCCCcceeee----ccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceee
Confidence 998887763333344589999987433112212 23334577888887666444443 4568999976544433
No 315
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.32 E-value=1.8e-05 Score=68.71 Aligned_cols=147 Identities=16% Similarity=0.222 Sum_probs=99.4
Q ss_pred ceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEE
Q 024451 96 DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQV 175 (267)
Q Consensus 96 ~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 175 (267)
.+.+.+++ +++++-|.-+|.+++.+.... + +....|... ..+|.++++|+.||+|.|..+-+.+....
T Consensus 41 ~is~~av~---~~~~~~GtH~g~v~~~~~~~~--~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 41 AISCCAVH---DKFFALGTHRGAVYLTTCQGN--P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred HHHHHHhh---cceeeeccccceEEEEecCCc--c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 34444443 467888999999999987532 2 333334332 56799999999999999998877654432
Q ss_pred EEeecCCCCCCcEEEEEEccC-----CCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeE
Q 024451 176 YYQQHGENEIPHVTSIAFSIS-----GRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGS 250 (267)
Q Consensus 176 ~~~~~~~~~~~~v~~~~~s~~-----~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs 250 (267)
+- -..++.+++++|+ .+.+++|+..| +.++.-.-....... ......++|.+++|. |+++|=++
T Consensus 109 ~d------f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v--~l~~~eG~I~~i~W~--g~lIAWan 177 (846)
T KOG2066|consen 109 YD------FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV--VLSEGEGPIHSIKWR--GNLIAWAN 177 (846)
T ss_pred Ee------cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce--eeecCccceEEEEec--CcEEEEec
Confidence 21 1235789999997 45788888888 888763221111011 113457899999996 78888876
Q ss_pred CCCcEEEEecCceEec
Q 024451 251 WDTNLKIWAFGGYRRV 266 (267)
Q Consensus 251 ~dg~i~~w~~~~~~~~ 266 (267)
.+ -|++|+....+|+
T Consensus 178 d~-Gv~vyd~~~~~~l 192 (846)
T KOG2066|consen 178 DD-GVKVYDTPTRQRL 192 (846)
T ss_pred CC-CcEEEecccccee
Confidence 55 5799998777765
No 316
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.20 E-value=8.2e-05 Score=65.34 Aligned_cols=156 Identities=15% Similarity=0.256 Sum_probs=99.2
Q ss_pred CCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecC-CCEEEEeeCCCc-----EEEEeCCCCe--e-eEE
Q 024451 105 SNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPD-GNRFGTGSDDGT-----CRLFDIRTGH--Q-LQV 175 (267)
Q Consensus 105 ~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~-----i~iwd~~~~~--~-~~~ 175 (267)
+++..++.|+.+|.|-+.+-. .+..+.++++...+...-+.-+ .+++++.++|+. ++|||++..+ . .+.
T Consensus 33 s~~~~vvigt~~G~V~~Ln~s--~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c 110 (933)
T KOG2114|consen 33 SSTGSVVIGTADGRVVILNSS--FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQC 110 (933)
T ss_pred CCCceEEEeeccccEEEeccc--ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcce
Confidence 345677889999998887643 3344667777665433333333 368888887764 9999986531 1 111
Q ss_pred E-----EeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCc--cceeeecccccCCccceEEEEEECCCCCeEEE
Q 024451 176 Y-----YQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL--AKVVLNLGSLQNSHEGRITCLGLSADGSALCT 248 (267)
Q Consensus 176 ~-----~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~--~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~s 248 (267)
+ .....+.+..++++++.+.+-..+++|..+|.|..+.... .+.... .......++|+.+++..+++.++-
T Consensus 111 ~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~--~~~~~~~~pITgL~~~~d~~s~lF 188 (933)
T KOG2114|consen 111 LYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQ--DYSHRGKEPITGLALRSDGKSVLF 188 (933)
T ss_pred eeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccce--eeeccCCCCceeeEEecCCceeEE
Confidence 1 1211223455788899999999999999999999985322 111111 111235679999999888876332
Q ss_pred eECCCcEEEEecCceE
Q 024451 249 GSWDTNLKIWAFGGYR 264 (267)
Q Consensus 249 gs~dg~i~~w~~~~~~ 264 (267)
...-..|.+|.+.|..
T Consensus 189 v~Tt~~V~~y~l~gr~ 204 (933)
T KOG2114|consen 189 VATTEQVMLYSLSGRT 204 (933)
T ss_pred EEecceeEEEEecCCC
Confidence 3334678888876544
No 317
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.19 E-value=0.0018 Score=51.37 Aligned_cols=201 Identities=17% Similarity=0.226 Sum_probs=119.6
Q ss_pred EEEEecCCCeeEEEeeCCCe-EEEEeCCCCeeEEEeCCc---cccCCccceEEEEEeCCCCeEEEE----ecCCCeEEEE
Q 024451 51 CCQYVPDEDTHLITSSGDQT-CVLWDITTGLRTSVFGGE---FQSGHTADVLSVSISGSNSRMFVS----GSCDSTARLW 122 (267)
Q Consensus 51 ~~~~~~~~~~~l~s~~~d~~-v~iwd~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~s----~~~d~~i~iw 122 (267)
.+..+|.....++.+-.-|+ ..+||..++.....+... ...+| ..|++....++.| ....|.|-||
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~IgVy 82 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGH------GVFSPDGRLLYTTENDYETGRGVIGVY 82 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecC------EEEcCCCCEEEEeccccCCCcEEEEEE
Confidence 45667766666777777765 668899888766554321 11233 3366544444433 3456889999
Q ss_pred eCCCcccceEEeeccccceeEEEEecCCCEEEEe--e-----CCC-----------cEEEEeCCCCeeeEEEEeecCCCC
Q 024451 123 DTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTG--S-----DDG-----------TCRLFDIRTGHQLQVYYQQHGENE 184 (267)
Q Consensus 123 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~-----~d~-----------~i~iwd~~~~~~~~~~~~~~~~~~ 184 (267)
|....-..+..+..|.-.-+.+.+.|+|+.|+.+ + +.| .+-..|..+++.+....-. ...+
T Consensus 83 d~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp-~~~~ 161 (305)
T PF07433_consen 83 DAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELP-PDLH 161 (305)
T ss_pred ECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecC-cccc
Confidence 9974445567777777667899999999777654 1 112 2444555666554432110 0112
Q ss_pred CCcEEEEEEccCCCEEEEEEeCCe-------EEEEeCCccceeeeccc---ccCCccceEEEEEECCCCCeE-EEeECCC
Q 024451 185 IPHVTSIAFSISGRLLFAGYSNGD-------CYVWDTLLAKVVLNLGS---LQNSHEGRITCLGLSADGSAL-CTGSWDT 253 (267)
Q Consensus 185 ~~~v~~~~~s~~~~~l~~g~~dg~-------i~i~d~~~~~~~~~~~~---~~~~~~~~v~~~~~~p~~~~l-~sgs~dg 253 (267)
.-.+..++++++|..++..-..|. |.+++.. +.+..+.. ........+-+|++++++.++ +|+-..+
T Consensus 162 ~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg 239 (305)
T PF07433_consen 162 QLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGG 239 (305)
T ss_pred ccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCC
Confidence 235888999999887776644442 2223211 11111100 001234568899999999877 4566688
Q ss_pred cEEEEec
Q 024451 254 NLKIWAF 260 (267)
Q Consensus 254 ~i~~w~~ 260 (267)
.+.+|+.
T Consensus 240 ~~~~~d~ 246 (305)
T PF07433_consen 240 RVAVWDA 246 (305)
T ss_pred EEEEEEC
Confidence 8999974
No 318
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.18 E-value=0.0018 Score=54.15 Aligned_cols=249 Identities=12% Similarity=0.162 Sum_probs=126.6
Q ss_pred eeeCCCCCeEEEccCCCeEEEeecCCCCCCC---------------------CCC---------------cccccccCCe
Q 024451 3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKD---------------------GNL---------------PVSRMLSGHK 46 (267)
Q Consensus 3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~---------------------~~~---------------~~~~~~~~h~ 46 (267)
+.|+++..-|+.+...|.|.+|....+.... +.. .....+....
T Consensus 7 vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~~~~ 86 (395)
T PF08596_consen 7 VSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLDAKQ 86 (395)
T ss_dssp EEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE---S
T ss_pred EEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhheeccC
Confidence 5678888889999999999999765421110 000 0111233447
Q ss_pred eeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCcc---ccCCccceEEEEEe----CCCC---eEEEEecCC
Q 024451 47 GYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEF---QSGHTADVLSVSIS----GSNS---RMFVSGSCD 116 (267)
Q Consensus 47 ~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~---~~~~~~~i~~~~~~----~~~~---~~~~s~~~d 116 (267)
++|++++.+.- .+++.|.++|.+.|-|++...-+....... .......+.++.|. ..+. -.++.|...
T Consensus 87 g~vtal~~S~i--GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~ 164 (395)
T PF08596_consen 87 GPVTALKNSDI--GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNS 164 (395)
T ss_dssp -SEEEEEE-BT--SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETT
T ss_pred CcEeEEecCCC--cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCC
Confidence 88999988643 489999999999999998765444321111 11123345566654 1111 356778888
Q ss_pred CeEEEEeCCC-ccc-----ceEEeeccccceeEEE-EecC-C-------------------CEEEEeeCCCcEEEEeCCC
Q 024451 117 STARLWDTRV-ASR-----AVRTFHGHEGDVNTVK-FFPD-G-------------------NRFGTGSDDGTCRLFDIRT 169 (267)
Q Consensus 117 ~~i~iwd~~~-~~~-----~~~~~~~~~~~i~~~~-~~~~-~-------------------~~l~~~~~d~~i~iwd~~~ 169 (267)
|.+.+|.+.. ... .......+.++|..+. +..+ | +.++....+..+|++..-+
T Consensus 165 G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~ 244 (395)
T PF08596_consen 165 GNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPK 244 (395)
T ss_dssp SEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT-
T ss_pred CCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCC
Confidence 9999997642 111 1111123445555443 2111 0 1244555678999999887
Q ss_pred CeeeEEEEeecCCCCCCcEEEEEEc-----cCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCC
Q 024451 170 GHQLQVYYQQHGENEIPHVTSIAFS-----ISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS 244 (267)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~v~~~~~s-----~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 244 (267)
.+.....+. . ......+++- ..+..|++-..+|.+++|.+...+.+.............+....++++|.
T Consensus 245 ~k~~~K~~~---~--~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gd 319 (395)
T PF08596_consen 245 SKGAHKSFD---D--PFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGD 319 (395)
T ss_dssp --EEEEE-S---S---EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-
T ss_pred Ccccceeec---c--ccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCC
Confidence 666544331 1 1123344442 35667788889999999998877766554332222333445567789999
Q ss_pred eEEEeECCCcEEEEe
Q 024451 245 ALCTGSWDTNLKIWA 259 (267)
Q Consensus 245 ~l~sgs~dg~i~~w~ 259 (267)
.++-.|. ..+.++.
T Consensus 320 i~~~~gp-sE~~l~s 333 (395)
T PF08596_consen 320 IFYWTGP-SEIQLFS 333 (395)
T ss_dssp EEEE-SS-SEEEEEE
T ss_pred EEEEeCc-ccEEEEE
Confidence 8876543 3444443
No 319
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.17 E-value=0.002 Score=51.13 Aligned_cols=228 Identities=18% Similarity=0.202 Sum_probs=120.3
Q ss_pred eeeCC-CCCeEEEccCCCe-EEEeecCCCCCC-CCCCcccccccCCeeeEEEEEEecCCCeeEEEe-----eCCCeEEEE
Q 024451 3 CAFSP-TGQSVACGGLDSV-CSIFNLNSPTDK-DGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITS-----SGDQTCVLW 74 (267)
Q Consensus 3 ~~~~~-~g~~l~~~~~d~~-v~~w~~~~~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~-----~~d~~v~iw 74 (267)
++.+| .+..++.+-.-|+ ..+||....... ....+.-+.+.||. .|+|++. +|++. ...|.|-+|
T Consensus 10 ~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg------~fs~dG~-~LytTEnd~~~g~G~IgVy 82 (305)
T PF07433_consen 10 VAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHG------VFSPDGR-LLYTTENDYETGRGVIGVY 82 (305)
T ss_pred eeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCE------EEcCCCC-EEEEeccccCCCcEEEEEE
Confidence 45667 4455666665544 446776543211 11223456777774 6788765 55543 335789999
Q ss_pred eCC-CCeeEEEeCCccccCCccceEEEEEeCCCCeEEEE-e----------------cCCCeEEEEeCCCcccceEE--e
Q 024451 75 DIT-TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVS-G----------------SCDSTARLWDTRVASRAVRT--F 134 (267)
Q Consensus 75 d~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s-~----------------~~d~~i~iwd~~~~~~~~~~--~ 134 (267)
|.. +-.++..+...-...| .+.+.+....+++. | .++-.+.+.|.+.+ ..+.+ +
T Consensus 83 d~~~~~~ri~E~~s~GIGPH-----el~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG-~ll~q~~L 156 (305)
T PF07433_consen 83 DAARGYRRIGEFPSHGIGPH-----ELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG-ALLEQVEL 156 (305)
T ss_pred ECcCCcEEEeEecCCCcChh-----hEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCC-ceeeeeec
Confidence 998 4455555543222223 34455433222222 1 12223333333322 22222 2
Q ss_pred --eccccceeEEEEecCCCEEEEeeCCCc-------EEEEeCCCCeeeEEEEeec--CCCCCCcEEEEEEccCCCEEEEE
Q 024451 135 --HGHEGDVNTVKFFPDGNRFGTGSDDGT-------CRLFDIRTGHQLQVYYQQH--GENEIPHVTSIAFSISGRLLFAG 203 (267)
Q Consensus 135 --~~~~~~i~~~~~~~~~~~l~~~~~d~~-------i~iwd~~~~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~g 203 (267)
.-|...|.-+++.++|..+...-..+. +-+++. ++.+..+.... ...-..++-+++++.++..+++.
T Consensus 157 p~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~t 234 (305)
T PF07433_consen 157 PPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVT 234 (305)
T ss_pred CccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEE
Confidence 235566778888888765554433222 222322 12111111000 01122468999999999988877
Q ss_pred Ee-CCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECC
Q 024451 204 YS-NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD 252 (267)
Q Consensus 204 ~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d 252 (267)
+- .|.+.+||..+++.+.... -..+..++-.+++ +++|.+..
T Consensus 235 sPrGg~~~~~d~~tg~~~~~~~------l~D~cGva~~~~~-f~~ssG~G 277 (305)
T PF07433_consen 235 SPRGGRVAVWDAATGRLLGSVP------LPDACGVAPTDDG-FLVSSGQG 277 (305)
T ss_pred CCCCCEEEEEECCCCCEeeccc------cCceeeeeecCCc-eEEeCCCc
Confidence 74 5789999998887764331 1234556666665 66665543
No 320
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.15 E-value=0.002 Score=50.14 Aligned_cols=206 Identities=17% Similarity=0.191 Sum_probs=110.4
Q ss_pred cccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEE
Q 024451 41 MLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTAR 120 (267)
Q Consensus 41 ~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~ 120 (267)
.+.+-...+..+.|+|+.+.+++.....+.|...+.+ +..+..+... -....-.+++.. +++++++.-.++.+.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~----g~~D~EgI~y~g-~~~~vl~~Er~~~L~ 89 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLD----GFGDYEGITYLG-NGRYVLSEERDQRLY 89 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-S----S-SSEEEEEE-S-TTEEEEEETTTTEEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCC----CCCCceeEEEEC-CCEEEEEEcCCCcEE
Confidence 3445556689999999877777778888999888875 4444433211 134556677764 567777777789999
Q ss_pred EEeCCCcccc-----eEEe-----eccccceeEEEEecCCCEEEEeeCCCcEEEEeCCC---CeeeEEEEe-ec--CCCC
Q 024451 121 LWDTRVASRA-----VRTF-----HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT---GHQLQVYYQ-QH--GENE 184 (267)
Q Consensus 121 iwd~~~~~~~-----~~~~-----~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~---~~~~~~~~~-~~--~~~~ 184 (267)
++++...... ...+ ..++..+..++|+|.++.|..+-+....+++.++. ...+..... .. ....
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (248)
T PF06977_consen 90 IFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLF 169 (248)
T ss_dssp EEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--
T ss_pred EEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccce
Confidence 8887322211 1111 13456689999999888887777777777877654 222211111 00 1112
Q ss_pred CCcEEEEEEccCCC-EEEEEEeCCeEEEEeCCccceeeecccccCC-c-----cceEEEEEECCCCCeEEEeECCCcE
Q 024451 185 IPHVTSIAFSISGR-LLFAGYSNGDCYVWDTLLAKVVLNLGSLQNS-H-----EGRITCLGLSADGSALCTGSWDTNL 255 (267)
Q Consensus 185 ~~~v~~~~~s~~~~-~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~-~-----~~~v~~~~~~p~~~~l~sgs~dg~i 255 (267)
...++++.++|... +++.+..+..|..+|. .++....+ .+... | -..-..++|.|+|++.++. .-+..
T Consensus 170 ~~d~S~l~~~p~t~~lliLS~es~~l~~~d~-~G~~~~~~-~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlf 244 (248)
T PF06977_consen 170 VRDLSGLSYDPRTGHLLILSDESRLLLELDR-QGRVVSSL-SLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLF 244 (248)
T ss_dssp SS---EEEEETTTTEEEEEETTTTEEEEE-T-T--EEEEE-E-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEE
T ss_pred eccccceEEcCCCCeEEEEECCCCeEEEECC-CCCEEEEE-EeCCcccCcccccCCccEEEECCCCCEEEEc-CCceE
Confidence 33578999998754 5566667788888984 44443322 11111 1 1235789999999877754 44433
No 321
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=0.00026 Score=57.08 Aligned_cols=70 Identities=17% Similarity=0.273 Sum_probs=57.6
Q ss_pred ceeeCCCCC-eEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCC
Q 024451 2 TCAFSPTGQ-SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTG 79 (267)
Q Consensus 2 ~~~~~~~g~-~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~ 79 (267)
.++|+|..+ +|..++-+++|+|.|++... +...+..| ..+++|.|..++..++..|-..|.|.+||++..
T Consensus 198 dlafSp~~~GLl~~asl~nkiki~dlet~~-------~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~ 268 (463)
T KOG1645|consen 198 DLAFSPFNEGLLGLASLGNKIKIMDLETSC-------VVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQP 268 (463)
T ss_pred hhccCccccceeeeeccCceEEEEecccce-------eeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCC
Confidence 478999877 78999999999999997632 33444555 789999999888888889999999999999754
No 322
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.11 E-value=0.0017 Score=54.16 Aligned_cols=138 Identities=21% Similarity=0.264 Sum_probs=91.9
Q ss_pred CccceEEEEEeCCCCeEE-EEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCC---CcEEEEeCC
Q 024451 93 HTADVLSVSISGSNSRMF-VSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD---GTCRLFDIR 168 (267)
Q Consensus 93 ~~~~i~~~~~~~~~~~~~-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~i~iwd~~ 168 (267)
-.+.|..++|.|.+.++. ++|-.+..+-++|++. . ++.+ ...+.=+.+.|+|.+++++.++-| |.+-+||..
T Consensus 273 ~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~-N--l~~~-~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~ 348 (561)
T COG5354 273 LKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG-N--LRFY-FPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPA 348 (561)
T ss_pred ccccceeeeecccCCceeEEecccccceeeccccc-c--eEEe-cCCcccccccccCcccEEEEecCCccccceEEeccC
Confidence 467899999987665543 4457888999999873 2 3322 234555788999999999988765 679999987
Q ss_pred CCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEe------CCeEEEEeCCccceeeecccccCCccceEEEEEECCC
Q 024451 169 TGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS------NGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD 242 (267)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 242 (267)
.......-+. . ...+-+.|+|+++++.+... |..+.|||....+.. ..+.+.|.|.
T Consensus 349 ~rf~~~~~~~--~----~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f------------el~~~~W~p~ 410 (561)
T COG5354 349 GRFKVAGAFN--G----LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF------------ELTNITWDPS 410 (561)
T ss_pred CceEEEEEee--c----CCceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh------------hhhhccccCC
Confidence 6543321111 1 12455679999999988653 678999997543221 3445666666
Q ss_pred CCeEEEeECC
Q 024451 243 GSALCTGSWD 252 (267)
Q Consensus 243 ~~~l~sgs~d 252 (267)
|++..+.|.+
T Consensus 411 ~~~~ttsSs~ 420 (561)
T COG5354 411 GQYVTTSSSC 420 (561)
T ss_pred cccceeeccC
Confidence 6665554443
No 323
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.05 E-value=8e-06 Score=71.48 Aligned_cols=107 Identities=22% Similarity=0.332 Sum_probs=81.8
Q ss_pred EEEecCCCEEEEee----CCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccce
Q 024451 144 VKFFPDGNRFGTGS----DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKV 219 (267)
Q Consensus 144 ~~~~~~~~~l~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~ 219 (267)
..|+|...+|++++ ..|.|-||- ++|++-... .....++++||+|..-.|+.|..-|.+.+|.....+.
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V------t~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ 93 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV------TYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET 93 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccc------ccceehhhhccChHHHHHhhccccceeEEEecCCcee
Confidence 57889888888775 457788774 444421111 1122467899999999999999999999999665443
Q ss_pred eeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451 220 VLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG 261 (267)
Q Consensus 220 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~ 261 (267)
. .....|..+|..+.|||+|..|+++..-|.+.+|.++
T Consensus 94 h----tv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 94 H----TVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred e----eeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 2 2235799999999999999999999999999999875
No 324
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.00 E-value=0.0039 Score=48.32 Aligned_cols=147 Identities=21% Similarity=0.260 Sum_probs=86.4
Q ss_pred CCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEe
Q 024451 68 DQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFF 147 (267)
Q Consensus 68 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~ 147 (267)
+++|..||..+++.+...... ......+.. .+. .++ .+++++.++.+..||...+.. .-.... .+.+.... .
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~--~~~~~~~~~-~~~-~~~-~v~~~~~~~~l~~~d~~tG~~-~W~~~~-~~~~~~~~-~ 73 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLG--PGIGGPVAT-AVP-DGG-RVYVASGDGNLYALDAKTGKV-LWRFDL-PGPISGAP-V 73 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECS--SSCSSEEET-EEE-ETT-EEEEEETTSEEEEEETTTSEE-EEEEEC-SSCGGSGE-E
T ss_pred CCEEEEEECCCCCEEEEEECC--CCCCCccce-EEE-eCC-EEEEEcCCCEEEEEECCCCCE-EEEeec-ccccccee-e
Confidence 678899999888776655321 111222211 221 233 455667899999999865543 333322 22222212 2
Q ss_pred cCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeec
Q 024451 148 PDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL 223 (267)
Q Consensus 148 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~ 223 (267)
..+..++.++.|+.+..+|..+++.+........+. ............+..++++..++.|+.+|..+++.+...
T Consensus 74 ~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~ 148 (238)
T PF13360_consen 74 VDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPP-AGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKY 148 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCT-CSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEE
T ss_pred ecccccccccceeeeEecccCCcceeeeeccccccc-cccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEe
Confidence 235566777788899999999998876532211111 111122223334788888888999999999988876554
No 325
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.97 E-value=0.00045 Score=61.90 Aligned_cols=140 Identities=15% Similarity=0.195 Sum_probs=87.6
Q ss_pred EeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCC----CCeEEEEecCCCeEEEEeCCCcccceEEee----
Q 024451 64 TSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGS----NSRMFVSGSCDSTARLWDTRVASRAVRTFH---- 135 (267)
Q Consensus 64 s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~---- 135 (267)
.....+.|.-.|++.|+-+..... ....++..+.-... .......|-.+..+.-||.|.....+..-.
T Consensus 499 ~~~~~~~ly~mDLe~GKVV~eW~~----~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y 574 (794)
T PF08553_consen 499 DPNNPNKLYKMDLERGKVVEEWKV----HDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQY 574 (794)
T ss_pred cCCCCCceEEEecCCCcEEEEeec----CCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccccc
Confidence 344567788889988876655431 22233555433211 112234677778899999986542221111
Q ss_pred ccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeC
Q 024451 136 GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT 214 (267)
Q Consensus 136 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~ 214 (267)
.......|++-..+| ++|.|+.+|.||+||- .++.... ..++-..+|..+..+.||+++++.+ +-.|.|++.
T Consensus 575 ~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT----~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 575 SSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKT----ALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred ccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhh----cCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 123456777776554 7999999999999993 4433222 2223345899999999999998875 556777774
No 326
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.94 E-value=0.00015 Score=63.27 Aligned_cols=248 Identities=16% Similarity=0.185 Sum_probs=140.4
Q ss_pred eeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCC-eeEEEeeCCCeEEEEeCCCCee
Q 024451 3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDED-THLITSSGDQTCVLWDITTGLR 81 (267)
Q Consensus 3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~ 81 (267)
.+|+|.-+.++-...-..+.++|++... +.....-..+.+..+++.|+.. ..|+..-.||.+.+|--.....
T Consensus 236 faf~p~~rn~lfi~~prellv~dle~~~-------~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~ 308 (1062)
T KOG1912|consen 236 FAFSPHWRNILFITFPRELLVFDLEYEC-------CLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPT 308 (1062)
T ss_pred hhcChhhhceEEEEeccceEEEcchhhc-------eeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCc
Confidence 4678877666666677789999986521 1122222234455667777543 3577888999999996543211
Q ss_pred EEEeC-CccccCCccceEEEEEe-----------CCCCeEEEEecCCCeEEEEeCCCcccc-------------------
Q 024451 82 TSVFG-GEFQSGHTADVLSVSIS-----------GSNSRMFVSGSCDSTARLWDTRVASRA------------------- 130 (267)
Q Consensus 82 ~~~~~-~~~~~~~~~~i~~~~~~-----------~~~~~~~~s~~~d~~i~iwd~~~~~~~------------------- 130 (267)
....+ +.+...-...+..++.. |.+...++.--.+|.+.+|+++.++..
T Consensus 309 ~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~ 388 (1062)
T KOG1912|consen 309 EFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLS 388 (1062)
T ss_pred cccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCc
Confidence 11110 00000111112222221 221222222344667777876522100
Q ss_pred -----------eEEeeccccceeEEEEec-----------CCC-------EEEEeeCCCcEEEEeCCCCeeeEEEEeecC
Q 024451 131 -----------VRTFHGHEGDVNTVKFFP-----------DGN-------RFGTGSDDGTCRLFDIRTGHQLQVYYQQHG 181 (267)
Q Consensus 131 -----------~~~~~~~~~~i~~~~~~~-----------~~~-------~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 181 (267)
+..-.+|.....+...+| .++ ++|.|.+.|+|.++|+.++.....+
T Consensus 389 ~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~f----- 463 (1062)
T KOG1912|consen 389 TKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASF----- 463 (1062)
T ss_pred eeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhh-----
Confidence 001123444444433332 222 4788899999999999876533222
Q ss_pred CCCCCcEEEEEEccCCCEEEEEE---------eCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECC
Q 024451 182 ENEIPHVTSIAFSISGRLLFAGY---------SNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD 252 (267)
Q Consensus 182 ~~~~~~v~~~~~s~~~~~l~~g~---------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d 252 (267)
.-+...|.++.|-.+.+++-.++ --+.+.+-|++++... .+...++..+.+|..+..|..|+||+..-.|
T Consensus 464 svht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk-~fR~l~~~despI~~irvS~~~~yLai~Fr~ 542 (1062)
T KOG1912|consen 464 SVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSK-RFRGLQKPDESPIRAIRVSSSGRYLAILFRR 542 (1062)
T ss_pred cccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEccccccc-ccccCCCCCcCcceeeeecccCceEEEEecc
Confidence 11223466777766555554443 2346677787765432 3444556778899999999999999999999
Q ss_pred CcEEEEecCce
Q 024451 253 TNLKIWAFGGY 263 (267)
Q Consensus 253 g~i~~w~~~~~ 263 (267)
.-+.+|++.+.
T Consensus 543 ~plEiwd~kt~ 553 (1062)
T KOG1912|consen 543 EPLEIWDLKTL 553 (1062)
T ss_pred cchHHHhhccc
Confidence 99999997544
No 327
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.85 E-value=0.0013 Score=59.08 Aligned_cols=146 Identities=18% Similarity=0.176 Sum_probs=87.5
Q ss_pred CCeEEEEe-cCCCeEEEEeCCCcccceEEeeccccc-eeEEEEecCC-------CEEEEeeCCCcEEEEeCCCCeeeEEE
Q 024451 106 NSRMFVSG-SCDSTARLWDTRVASRAVRTFHGHEGD-VNTVKFFPDG-------NRFGTGSDDGTCRLFDIRTGHQLQVY 176 (267)
Q Consensus 106 ~~~~~~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~-i~~~~~~~~~-------~~l~~~~~d~~i~iwd~~~~~~~~~~ 176 (267)
+..+++-. .....|+-.|+.. .+.+.....|... |..+ .|+. ..-..|-.+..+..||.|-.....+.
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~-GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~ 568 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLER-GKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVD 568 (794)
T ss_pred ccceEeecCCCCCceEEEecCC-CcEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCceee
Confidence 34444433 3456777788874 4456666655433 4443 3432 23456777889999999864311111
Q ss_pred EeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEE
Q 024451 177 YQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLK 256 (267)
Q Consensus 177 ~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~ 256 (267)
.+.+........++++-+ ...+||+|+.+|.|++||. .++.... ...+...+|..|..+.||++++..+ +..+.
T Consensus 569 ~~~k~Y~~~~~Fs~~aTt-~~G~iavgs~~G~IRLyd~-~g~~AKT---~lp~lG~pI~~iDvt~DGkwilaTc-~tyLl 642 (794)
T PF08553_consen 569 SQSKQYSSKNNFSCFATT-EDGYIAVGSNKGDIRLYDR-LGKRAKT---ALPGLGDPIIGIDVTADGKWILATC-KTYLL 642 (794)
T ss_pred ccccccccCCCceEEEec-CCceEEEEeCCCcEEeecc-cchhhhh---cCCCCCCCeeEEEecCCCcEEEEee-cceEE
Confidence 111111222345666544 4458999999999999994 3322111 1134578999999999999987544 67777
Q ss_pred EEec
Q 024451 257 IWAF 260 (267)
Q Consensus 257 ~w~~ 260 (267)
|.+.
T Consensus 643 Li~t 646 (794)
T PF08553_consen 643 LIDT 646 (794)
T ss_pred EEEE
Confidence 7763
No 328
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.78 E-value=0.00046 Score=59.58 Aligned_cols=110 Identities=16% Similarity=0.261 Sum_probs=79.5
Q ss_pred CCCeEEEEecCCCeEEEEeCCCcccceEEee--ccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeE-EEEeecC
Q 024451 105 SNSRMFVSGSCDSTARLWDTRVASRAVRTFH--GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQ-VYYQQHG 181 (267)
Q Consensus 105 ~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~ 181 (267)
....+++-|+.-|.+.+|+-.. .. .+.++ +-.+.+.....+++..++|.|+..|.|.++.+..+.... .+.....
T Consensus 43 st~~~l~~GsS~G~lyl~~R~~-~~-~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d 120 (726)
T KOG3621|consen 43 ATEEYLAMGSSAGSVYLYNRHT-GE-MRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCD 120 (726)
T ss_pred cCCceEEEecccceEEEEecCc-hh-hhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeecccc
Confidence 3566888899999999998542 22 22222 233456677778888889999999999999987644332 2223333
Q ss_pred CCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCc
Q 024451 182 ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL 216 (267)
Q Consensus 182 ~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~ 216 (267)
..+...|++++|++++..+.+|...|.|..-.+..
T Consensus 121 ~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 121 KSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 33456799999999999999999999998877655
No 329
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.77 E-value=9.2e-05 Score=38.71 Aligned_cols=36 Identities=47% Similarity=0.903 Sum_probs=31.7
Q ss_pred eEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEe
Q 024451 131 VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFD 166 (267)
Q Consensus 131 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd 166 (267)
...+..|...|.++.|++.+..+++++.|+.+++||
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 445567888999999999999999999999999996
No 330
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.72 E-value=0.00047 Score=59.49 Aligned_cols=114 Identities=18% Similarity=0.184 Sum_probs=83.1
Q ss_pred EEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCcccee--ee
Q 024451 145 KFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVV--LN 222 (267)
Q Consensus 145 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~--~~ 222 (267)
.++..+++++.|+.-|.+-+|+-..++.. .+... .....+...+.+++..++|+|+..|.|.++-+...... ..
T Consensus 40 c~dst~~~l~~GsS~G~lyl~~R~~~~~~-~~~~~---~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~ 115 (726)
T KOG3621|consen 40 CVDATEEYLAMGSSAGSVYLYNRHTGEMR-KLKNE---GATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDY 115 (726)
T ss_pred EeecCCceEEEecccceEEEEecCchhhh-ccccc---CccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCccee
Confidence 34456889999999999999997655443 22211 12234566678999999999999999999976542221 12
Q ss_pred cccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451 223 LGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 223 ~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~ 262 (267)
+....+.|...|++++|++|+..+.+|..-|.|.+-.++.
T Consensus 116 ~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 116 VTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred eccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 2333456889999999999999999999999988776654
No 331
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.66 E-value=0.0001 Score=38.55 Aligned_cols=31 Identities=35% Similarity=0.689 Sum_probs=28.4
Q ss_pred CccceEEEEEECCCCCeEEEeECCCcEEEEe
Q 024451 229 SHEGRITCLGLSADGSALCTGSWDTNLKIWA 259 (267)
Q Consensus 229 ~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~ 259 (267)
.|...|.++.|+|+++++++++.|+.+++|+
T Consensus 10 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 10 GHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred ecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4677899999999999999999999999995
No 332
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.63 E-value=0.00033 Score=61.86 Aligned_cols=108 Identities=13% Similarity=0.177 Sum_probs=74.8
Q ss_pred EEEecCCCeeEEEee----CCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCc
Q 024451 52 CQYVPDEDTHLITSS----GDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA 127 (267)
Q Consensus 52 ~~~~~~~~~~l~s~~----~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~ 127 (267)
.+|+|.. .+++.++ ..|+|.|| .++|++..-.. ..-.+.+++|+| ..-.++.|-.-|.+.+|....
T Consensus 21 ~SWHPse-PlfAVA~fS~er~GSVtIf-adtGEPqr~Vt------~P~hatSLCWHp-e~~vLa~gwe~g~~~v~~~~~- 90 (1416)
T KOG3617|consen 21 SSWHPSE-PLFAVASFSPERGGSVTIF-ADTGEPQRDVT------YPVHATSLCWHP-EEFVLAQGWEMGVSDVQKTNT- 90 (1416)
T ss_pred cccCCCC-ceeEEEEecCCCCceEEEE-ecCCCCCcccc------cceehhhhccCh-HHHHHhhccccceeEEEecCC-
Confidence 4677865 4566554 35778877 33443221110 112345789996 445667788889999998753
Q ss_pred ccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCC
Q 024451 128 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT 169 (267)
Q Consensus 128 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 169 (267)
.+.......|..+|..+.|+|+|+.++++..=|.+.+|....
T Consensus 91 ~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 91 TETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred ceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 333444557899999999999999999999999999998763
No 333
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.59 E-value=0.028 Score=49.17 Aligned_cols=98 Identities=19% Similarity=0.167 Sum_probs=64.8
Q ss_pred CCeEEEEeCCC----cccceEEeeccccceeEEEEecCCCEEEEee-CCCcEEEEeCCCCeee--------EEEEeecCC
Q 024451 116 DSTARLWDTRV----ASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRTGHQL--------QVYYQQHGE 182 (267)
Q Consensus 116 d~~i~iwd~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~--------~~~~~~~~~ 182 (267)
++.|.+.|.+. .......+. -....+.+.++|||+++++++ .+.++.|.|+.+.+.. ..+..+. .
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaev-e 372 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEP-E 372 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEee-c
Confidence 35678888764 122233232 234568899999999987665 5899999999875421 0111111 1
Q ss_pred CCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCc
Q 024451 183 NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL 216 (267)
Q Consensus 183 ~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~ 216 (267)
. .......+|+++|....+-.-|..|.-||+..
T Consensus 373 v-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 373 L-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred c-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 1 11245778999999888888999999999765
No 334
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.52 E-value=0.043 Score=46.27 Aligned_cols=179 Identities=14% Similarity=0.054 Sum_probs=96.9
Q ss_pred eEEEeeCCCeEEEEeCCCCeeEEEeCCccccC-Cc----cce-EEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEe
Q 024451 61 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSG-HT----ADV-LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF 134 (267)
Q Consensus 61 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~-~~----~~i-~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~ 134 (267)
.++.++.++.+...|.+++............+ +. ..+ .+..+. ++ .+..++.++.+..+|...+....+.-
T Consensus 207 ~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~--~~-~vy~~~~~g~l~ald~~tG~~~W~~~ 283 (394)
T PRK11138 207 GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVV--GG-VVYALAYNGNLVALDLRSGQIVWKRE 283 (394)
T ss_pred EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEE--CC-EEEEEEcCCeEEEEECCCCCEEEeec
Confidence 35556778888888888776544322110000 00 000 011111 23 34456678889888887544332211
Q ss_pred eccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeC
Q 024451 135 HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT 214 (267)
Q Consensus 135 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~ 214 (267)
. .....+. ..+..+..++.|+.+..+|.++++.+... ..... ....+... .+..++.++.+|.|+.+|.
T Consensus 284 ~---~~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~---~~~~~-~~~~sp~v--~~g~l~v~~~~G~l~~ld~ 352 (394)
T PRK11138 284 Y---GSVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQ---SDLLH-RLLTAPVL--YNGYLVVGDSEGYLHWINR 352 (394)
T ss_pred C---CCccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcc---cccCC-CcccCCEE--ECCEEEEEeCCCEEEEEEC
Confidence 1 1111122 24567777888999999999988754321 11000 01111111 3567888899999999999
Q ss_pred CccceeeecccccCCccceEEE-EEECCCCCeEEEeECCCcEEEEe
Q 024451 215 LLAKVVLNLGSLQNSHEGRITC-LGLSADGSALCTGSWDTNLKIWA 259 (267)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~v~~-~~~~p~~~~l~sgs~dg~i~~w~ 259 (267)
.+++.+..... ....+.+ ..+ .+..|..++.||.+..++
T Consensus 353 ~tG~~~~~~~~----~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 353 EDGRFVAQQKV----DSSGFLSEPVV--ADDKLLIQARDGTVYAIT 392 (394)
T ss_pred CCCCEEEEEEc----CCCcceeCCEE--ECCEEEEEeCCceEEEEe
Confidence 88877654321 1111221 112 245677789999888765
No 335
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.52 E-value=0.00041 Score=38.72 Aligned_cols=33 Identities=12% Similarity=0.330 Sum_probs=29.4
Q ss_pred ccceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451 230 HEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 230 ~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~ 262 (267)
...+|.+++|+|...+||.|+.||.|.+|.+++
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLNW 42 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence 345799999999999999999999999999844
No 336
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.00094 Score=57.04 Aligned_cols=93 Identities=17% Similarity=0.232 Sum_probs=68.7
Q ss_pred cceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcE-EEEEEccCCCEEEEEEeCCeEEEEeCCcc
Q 024451 139 GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHV-TSIAFSISGRLLFAGYSNGDCYVWDTLLA 217 (267)
Q Consensus 139 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v-~~~~~s~~~~~l~~g~~dg~i~i~d~~~~ 217 (267)
..+.-+.|+|.-..+|.+..+|.+.+..+. .+.+..+.. ++ ..+ .+++|.|||+.|+.|..||.|++-|...+
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~-p~----~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~ 94 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPI-PG----ENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKG 94 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccC-CC----CccceeeeecCCCCEEEEEecCCeEEEEEccCC
Confidence 346788999999999999999999998876 444443321 11 134 49999999999999999999999999887
Q ss_pred ceeeecccccCCccceEEEEEEC
Q 024451 218 KVVLNLGSLQNSHEGRITCLGLS 240 (267)
Q Consensus 218 ~~~~~~~~~~~~~~~~v~~~~~~ 240 (267)
..+.... ..-+.+|.++-|.
T Consensus 95 ~~l~~~~---~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 95 GRLVSFL---FSVETDISKGIWD 114 (665)
T ss_pred Cceeccc---cccccchheeecc
Confidence 7665421 1234456666665
No 337
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.51 E-value=0.037 Score=45.23 Aligned_cols=134 Identities=12% Similarity=0.179 Sum_probs=79.4
Q ss_pred CeEEEEeCCCc---ccceEEe--eccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCe-eeEEEEeecCCCCCCcEEE
Q 024451 117 STARLWDTRVA---SRAVRTF--HGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH-QLQVYYQQHGENEIPHVTS 190 (267)
Q Consensus 117 ~~i~iwd~~~~---~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~ 190 (267)
|.|.++++... ...+..+ ....++|+++.-. .+ .++.+. .+.|.+|++...+ ...... ... ...+.+
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~-~~~---~~~i~s 134 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAF-YDS---PFYITS 134 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEE-E-B---SSSEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhhe-ecc---eEEEEE
Confidence 88999988752 0112211 2346778888766 33 444433 4799999998776 332221 111 124555
Q ss_pred EEEccCCCEEEEEEeCCeEEEEeCCc-cceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451 191 IAFSISGRLLFAGYSNGDCYVWDTLL-AKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFG 261 (267)
Q Consensus 191 ~~~s~~~~~l~~g~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~ 261 (267)
+. ..++++++|.....+.++.... .+.+...... .....+++++|-++++.++.+..+|.+.++.+.
T Consensus 135 l~--~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d--~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 135 LS--VFKNYILVGDAMKSVSLLRYDEENNKLILVARD--YQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EE--EETTEEEEEESSSSEEEEEEETTTE-EEEEEEE--SS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred Ee--ccccEEEEEEcccCEEEEEEEccCCEEEEEEec--CCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 54 3466999998888777764322 2222222221 234568888888777799999999999999875
No 338
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.48 E-value=0.048 Score=45.94 Aligned_cols=225 Identities=13% Similarity=0.076 Sum_probs=115.0
Q ss_pred CCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCc
Q 024451 9 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE 88 (267)
Q Consensus 9 g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~ 88 (267)
+..++.++.++.+..+|..... ..-...+. +.+.+--.. .++ .++.++.++.+..+|.++++....+...
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~-----~~W~~~~~---~~~~ssP~v-~~~-~v~v~~~~g~l~ald~~tG~~~W~~~~~ 189 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGE-----VAWQTKVA---GEALSRPVV-SDG-LVLVHTSNGMLQALNESDGAVKWTVNLD 189 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCC-----CcccccCC---CceecCCEE-ECC-EEEEECCCCEEEEEEccCCCEeeeecCC
Confidence 4556677788999888875422 11111111 112211011 123 4666788899999999999876655321
Q ss_pred cccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccc-c-----ceeEEEEec--CCCEEEEeeCCC
Q 024451 89 FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE-G-----DVNTVKFFP--DGNRFGTGSDDG 160 (267)
Q Consensus 89 ~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~-----~i~~~~~~~--~~~~l~~~~~d~ 160 (267)
..........+-.+. ++ .++.+..++.+...|...+......-.... + ....+..+| .+..++.++.++
T Consensus 190 ~~~~~~~~~~sP~v~--~~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g 266 (394)
T PRK11138 190 VPSLTLRGESAPATA--FG-GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNG 266 (394)
T ss_pred CCcccccCCCCCEEE--CC-EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCC
Confidence 100000000011111 22 344566778888777764432221100000 0 001111122 245677778899
Q ss_pred cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEEC
Q 024451 161 TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS 240 (267)
Q Consensus 161 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~ 240 (267)
.+.-+|..+++.+... ... ....+ ...+..++.++.+|.++.+|..+++.+.+..... + ....+..+
T Consensus 267 ~l~ald~~tG~~~W~~---~~~----~~~~~--~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~--~-~~~~sp~v- 333 (394)
T PRK11138 267 NLVALDLRSGQIVWKR---EYG----SVNDF--AVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLL--H-RLLTAPVL- 333 (394)
T ss_pred eEEEEECCCCCEEEee---cCC----CccCc--EEECCEEEEEcCCCeEEEEECCCCcEEEcccccC--C-CcccCCEE-
Confidence 9999999998765322 111 01111 2245677778889999999998877654332111 0 01111111
Q ss_pred CCCCeEEEeECCCcEEEEec
Q 024451 241 ADGSALCTGSWDTNLKIWAF 260 (267)
Q Consensus 241 p~~~~l~sgs~dg~i~~w~~ 260 (267)
.+..|..++.||.+...+.
T Consensus 334 -~~g~l~v~~~~G~l~~ld~ 352 (394)
T PRK11138 334 -YNGYLVVGDSEGYLHWINR 352 (394)
T ss_pred -ECCEEEEEeCCCEEEEEEC
Confidence 2455666777887776654
No 339
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.47 E-value=0.022 Score=48.21 Aligned_cols=143 Identities=16% Similarity=0.201 Sum_probs=85.6
Q ss_pred EEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCC--EE-----EEeeCCCcEEEEeCCCCee-eEEEEeec
Q 024451 109 MFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN--RF-----GTGSDDGTCRLFDIRTGHQ-LQVYYQQH 180 (267)
Q Consensus 109 ~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l-----~~~~~d~~i~iwd~~~~~~-~~~~~~~~ 180 (267)
++.++.....++=.|++. .+.+....-|.. |+-+.+.|+.+ .+ +.|-.|..|.-||.+-... .....+.+
T Consensus 348 il~~~~~~~~l~klDIE~-GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~k 425 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIER-GKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSK 425 (644)
T ss_pred EeeCCCCcCcceeeeccc-ceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecc
Confidence 444555555677677764 344555544443 77788887654 22 3455788888899875332 11122222
Q ss_pred CCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEe
Q 024451 181 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWA 259 (267)
Q Consensus 181 ~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~ 259 (267)
.....-...|.+- ....++++|+.+|.|++||. ..+.... ..++...+|..+..+.+|++++..+ +.++.|-+
T Consensus 426 qy~~k~nFsc~aT-T~sG~IvvgS~~GdIRLYdr-i~~~AKT---AlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~ 498 (644)
T KOG2395|consen 426 QYSTKNNFSCFAT-TESGYIVVGSLKGDIRLYDR-IGRRAKT---ALPGLGDAIKHVDVTADGKWILATC-KTYLLLID 498 (644)
T ss_pred ccccccccceeee-cCCceEEEeecCCcEEeehh-hhhhhhh---cccccCCceeeEEeeccCcEEEEec-ccEEEEEE
Confidence 2222222344443 34458999999999999995 3322211 1145678999999999999988544 55555543
No 340
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.46 E-value=0.0038 Score=52.76 Aligned_cols=139 Identities=15% Similarity=0.130 Sum_probs=87.1
Q ss_pred EEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeC-----------CCcEEEEe
Q 024451 98 LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD-----------DGTCRLFD 166 (267)
Q Consensus 98 ~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----------d~~i~iwd 166 (267)
+-+.|+|. +.+++|--.. -|.+|-=..-. .++.+ .|. .|.-+.|+|+.+||++-+. ...++|||
T Consensus 214 tyv~wSP~-GTYL~t~Hk~-GI~lWGG~~f~-r~~RF-~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWD 288 (698)
T KOG2314|consen 214 TYVRWSPK-GTYLVTFHKQ-GIALWGGESFD-RIQRF-YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWD 288 (698)
T ss_pred eeEEecCC-ceEEEEEecc-ceeeecCccHH-HHHhc-cCC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEE
Confidence 45678864 4566554443 47788533212 22223 354 4788999999999998652 25799999
Q ss_pred CCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeE
Q 024451 167 IRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSAL 246 (267)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l 246 (267)
+++|.....+... ......-.-+.||.++.++|.-.. ..|.||+.....++.. . ...-+.|....|+|.++.|
T Consensus 289 I~tG~lkrsF~~~--~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~-K---slki~gIr~FswsP~~~ll 361 (698)
T KOG2314|consen 289 IATGLLKRSFPVI--KSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDK-K---SLKISGIRDFSWSPTSNLL 361 (698)
T ss_pred ccccchhcceecc--CCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecc-c---ccCCccccCcccCCCcceE
Confidence 9999776554321 111223355789999999987655 5688998655332211 1 1123457778889988777
Q ss_pred EE
Q 024451 247 CT 248 (267)
Q Consensus 247 ~s 248 (267)
|=
T Consensus 362 AY 363 (698)
T KOG2314|consen 362 AY 363 (698)
T ss_pred EE
Confidence 63
No 341
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.44 E-value=0.01 Score=50.26 Aligned_cols=181 Identities=19% Similarity=0.277 Sum_probs=97.5
Q ss_pred eeCCCCCeEEEcc---CC-CeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEE--eCC
Q 024451 4 AFSPTGQSVACGG---LD-SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLW--DIT 77 (267)
Q Consensus 4 ~~~~~g~~l~~~~---~d-~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iw--d~~ 77 (267)
+|+|++..++-.. .. ..+.++++.... .+......+++. .-+|+|++..++++...|+...|| |+.
T Consensus 199 ~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~-----~~~i~~~~g~~~---~P~fspDG~~l~f~~~rdg~~~iy~~dl~ 270 (425)
T COG0823 199 AWSPDGKKLAYVSFELGGCPRIYYLDLNTGK-----RPVILNFNGNNG---APAFSPDGSKLAFSSSRDGSPDIYLMDLD 270 (425)
T ss_pred ccCcCCCceEEEEEecCCCceEEEEeccCCc-----cceeeccCCccC---CccCCCCCCEEEEEECCCCCccEEEEcCC
Confidence 5788887655542 22 346666765422 122223344443 347899988888888888875555 666
Q ss_pred CCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEee
Q 024451 78 TGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS 157 (267)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 157 (267)
++........ .+... .-.|+|.+..++.+.+..|.-.||-..........+....+.-..-.++|+|++++..+
T Consensus 271 ~~~~~~Lt~~---~gi~~---~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~ 344 (425)
T COG0823 271 GKNLPRLTNG---FGINT---SPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFES 344 (425)
T ss_pred CCcceecccC---Ccccc---CccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEe
Confidence 5543221111 11111 33467666666667777776555543333333333433333333778899999998776
Q ss_pred CC-Cc--EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEE
Q 024451 158 DD-GT--CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY 204 (267)
Q Consensus 158 ~d-~~--i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~ 204 (267)
.. |. |.+.|+.++.....+... .....-+|++++..++-.+
T Consensus 345 ~~~g~~~i~~~~~~~~~~~~~lt~~------~~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 345 SSGGQWDIDKNDLASGGKIRILTST------YLNESPSWAPNGRMIMFSS 388 (425)
T ss_pred ccCCceeeEEeccCCCCcEEEcccc------ccCCCCCcCCCCceEEEec
Confidence 43 44 556666554432222111 1123345677777665443
No 342
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.39 E-value=0.00041 Score=52.01 Aligned_cols=142 Identities=16% Similarity=0.143 Sum_probs=84.2
Q ss_pred EEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeee-EEEEeecCCCCCCc
Q 024451 109 MFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQL-QVYYQQHGENEIPH 187 (267)
Q Consensus 109 ~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~ 187 (267)
.+...+.|+.|+-++++......++..-|... ......+..+++|+.||.|.+|...-.... ..+ ......
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~-----~s~~e~ 103 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRV-----CSGEES 103 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhh-----hccccc
Confidence 34566778888877765322222222112111 122234567999999999999987521111 000 000011
Q ss_pred E-EEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCcc-ceEEEEEECCCCCeEEEe--ECCCcEEEEecCc
Q 024451 188 V-TSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHE-GRITCLGLSADGSALCTG--SWDTNLKIWAFGG 262 (267)
Q Consensus 188 v-~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~v~~~~~~p~~~~l~sg--s~dg~i~~w~~~~ 262 (267)
+ ..+.-..++.+..++..+|.++.|+.+..+.+-.. ..|+ .++..+..+-.+++++.. |.|..++.|++..
T Consensus 104 i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~----g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 104 IDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYV----GQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ceeccccccccceeEEeccCCceeeeccccCceeeee----ccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 1 12222234457888999999999999887765433 3455 566666667777888887 8888888888643
No 343
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.39 E-value=0.02 Score=48.43 Aligned_cols=159 Identities=18% Similarity=0.224 Sum_probs=85.6
Q ss_pred eEEEEEEecCCCeeEEEe--eCC-CeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeC
Q 024451 48 YVSCCQYVPDEDTHLITS--SGD-QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDT 124 (267)
Q Consensus 48 ~v~~~~~~~~~~~~l~s~--~~d-~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~ 124 (267)
.+..-.|+|++....... ... ..+.+++++++........ .++.. .-.|+|...+++.+...||...||-.
T Consensus 194 ~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~---~g~~~---~P~fspDG~~l~f~~~rdg~~~iy~~ 267 (425)
T COG0823 194 LILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNF---NGNNG---APAFSPDGSKLAFSSSRDGSPDIYLM 267 (425)
T ss_pred ceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeecc---CCccC---CccCCCCCCEEEEEECCCCCccEEEE
Confidence 344455666654422221 112 3588889988765554431 12222 23477767777778888887665533
Q ss_pred CCcccceEEeeccccceeEEEEecCCCEEEEee-CCCc--EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEE
Q 024451 125 RVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS-DDGT--CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLF 201 (267)
Q Consensus 125 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 201 (267)
....+....+..-.+.-..=.|+|+|++++-.+ ..|. |-+.|.+...... +..... .-..-.|+|+|.+++
T Consensus 268 dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~r-iT~~~~-----~~~~p~~SpdG~~i~ 341 (425)
T COG0823 268 DLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTR-LTFSGG-----GNSNPVWSPDGDKIV 341 (425)
T ss_pred cCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeE-eeccCC-----CCcCccCCCCCCEEE
Confidence 222222333332223334668899999887655 4444 5555665544322 211111 112456899999988
Q ss_pred EEEe-CCe--EEEEeCCccc
Q 024451 202 AGYS-NGD--CYVWDTLLAK 218 (267)
Q Consensus 202 ~g~~-dg~--i~i~d~~~~~ 218 (267)
..+. +|. |.+.|.....
T Consensus 342 ~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 342 FESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred EEeccCCceeeEEeccCCCC
Confidence 7664 454 5555554433
No 344
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.0011 Score=56.57 Aligned_cols=71 Identities=14% Similarity=0.199 Sum_probs=57.0
Q ss_pred cEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEE-EEEECCCCCeEEEeECCCcEEEEecCc
Q 024451 187 HVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRIT-CLGLSADGSALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 187 ~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~-~~~~~p~~~~l~sgs~dg~i~~w~~~~ 262 (267)
.+..+.|+|.-..+|.+..+|+|.+.-.. ...+..+ ..++..++ +++|.|||+.||.|=.||+|++-|...
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwti----p~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~ 93 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTI----PIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEK 93 (665)
T ss_pred ceEEEEEcCccchhheeccCCcEEEEEec-cceeEec----cCCCCccceeeeecCCCCEEEEEecCCeEEEEEccC
Confidence 57788999999999999999999888765 3333333 22455566 999999999999999999999998743
No 345
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.30 E-value=0.023 Score=38.01 Aligned_cols=97 Identities=19% Similarity=0.286 Sum_probs=61.6
Q ss_pred EEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceE
Q 024451 53 QYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVR 132 (267)
Q Consensus 53 ~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~ 132 (267)
.|..++...|+.||.|..||+|+-+.-. ..+ .-.+.+.++..... ..|+.+-.+|+|-+|+-. .+..+
T Consensus 9 d~d~dg~~eLlvGs~D~~IRvf~~~e~~--~Ei------~e~~~v~~L~~~~~--~~F~Y~l~NGTVGvY~~~--~RlWR 76 (111)
T PF14783_consen 9 DFDGDGENELLVGSDDFEIRVFKGDEIV--AEI------TETDKVTSLCSLGG--GRFAYALANGTVGVYDRS--QRLWR 76 (111)
T ss_pred ecCCCCcceEEEecCCcEEEEEeCCcEE--EEE------ecccceEEEEEcCC--CEEEEEecCCEEEEEeCc--ceeee
Confidence 3444555789999999999999876322 211 12345677766543 568999999999999853 33344
Q ss_pred EeeccccceeEEEEec-CC---CEEEEeeCCCcEE
Q 024451 133 TFHGHEGDVNTVKFFP-DG---NRFGTGSDDGTCR 163 (267)
Q Consensus 133 ~~~~~~~~i~~~~~~~-~~---~~l~~~~~d~~i~ 163 (267)
.-..| .+.++.+.. ++ .-|++|-.+|.|-
T Consensus 77 iKSK~--~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 77 IKSKN--QVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eccCC--CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 33222 255554432 32 3688888888764
No 346
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.29 E-value=0.07 Score=43.59 Aligned_cols=185 Identities=12% Similarity=0.195 Sum_probs=102.2
Q ss_pred CeeEEEeeC----------CCeEEEEeCCCC----eeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeC
Q 024451 59 DTHLITSSG----------DQTCVLWDITTG----LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDT 124 (267)
Q Consensus 59 ~~~l~s~~~----------d~~v~iwd~~~~----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~ 124 (267)
..+++.|.. .|.|.++++... .+..... .....+.|.+++.. ++++++ +.++.|.+|++
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~---~~~~~g~V~ai~~~--~~~lv~--~~g~~l~v~~l 114 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIH---STEVKGPVTAICSF--NGRLVV--AVGNKLYVYDL 114 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEE---EEEESS-EEEEEEE--TTEEEE--EETTEEEEEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEE---EEeecCcceEhhhh--CCEEEE--eecCEEEEEEc
Confidence 467776654 288999999873 1222111 11245678888776 345443 33478999998
Q ss_pred CCcccceEEeeccc--cceeEEEEecCCCEEEEeeCCCcEEEEeCCC-CeeeEEEEeecCCCCCCcEEEEEEccCCCEEE
Q 024451 125 RVASRAVRTFHGHE--GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT-GHQLQVYYQQHGENEIPHVTSIAFSISGRLLF 201 (267)
Q Consensus 125 ~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 201 (267)
..... +.....+. ..+.++... +++++.|...+.+.++..+. .+.+..+.... ....+.++.|-++++.++
T Consensus 115 ~~~~~-l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~---~~~~v~~~~~l~d~~~~i 188 (321)
T PF03178_consen 115 DNSKT-LLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDY---QPRWVTAAEFLVDEDTII 188 (321)
T ss_dssp ETTSS-EEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEES---S-BEEEEEEEE-SSSEEE
T ss_pred cCccc-chhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecC---CCccEEEEEEecCCcEEE
Confidence 75441 22221222 245555544 66999998888888875543 23233333222 234688888876667999
Q ss_pred EEEeCCeEEEEeCCcc-------c-eeeecccccCCccceEEEE---EECC--CCC------eEEEeECCCcEEEE
Q 024451 202 AGYSNGDCYVWDTLLA-------K-VVLNLGSLQNSHEGRITCL---GLSA--DGS------ALCTGSWDTNLKIW 258 (267)
Q Consensus 202 ~g~~dg~i~i~d~~~~-------~-~~~~~~~~~~~~~~~v~~~---~~~p--~~~------~l~sgs~dg~i~~w 258 (267)
++..+|.+.++..... . .+.....+ ...+.|+++ .+.| .+. .++-++.+|.|-..
T Consensus 189 ~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f--~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 189 VGDKDGNLFVLRYNPEIPNSRDGDPKLERISSF--HLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEE--E-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EEcCCCeEEEEEECCCCcccccccccceeEEEE--ECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 9999999999875421 1 11111111 234567777 5556 222 37778889988743
No 347
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.28 E-value=0.028 Score=52.08 Aligned_cols=163 Identities=15% Similarity=0.219 Sum_probs=100.5
Q ss_pred cceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeC----CCC
Q 024451 95 ADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDI----RTG 170 (267)
Q Consensus 95 ~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~----~~~ 170 (267)
..|.++.+... ...++.+..+|.|.+-|.... .......-...|.+++|+||++.++....++++-+-.- -..
T Consensus 69 ~~i~s~~fl~d-~~~i~v~~~~G~iilvd~et~--~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E 145 (1265)
T KOG1920|consen 69 DEIVSVQFLAD-TNSICVITALGDIILVDPETL--ELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAE 145 (1265)
T ss_pred cceEEEEEecc-cceEEEEecCCcEEEEccccc--ceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhc
Confidence 67888888854 344566777888888876532 22222223467999999999999988888777765321 111
Q ss_pred eee-----------EEEEee-----cCCC-------------------CCCcEEEEEEccCCCEEEEEE----eC-CeEE
Q 024451 171 HQL-----------QVYYQQ-----HGEN-------------------EIPHVTSIAFSISGRLLFAGY----SN-GDCY 210 (267)
Q Consensus 171 ~~~-----------~~~~~~-----~~~~-------------------~~~~v~~~~~s~~~~~l~~g~----~d-g~i~ 210 (267)
+.+ ..-+.. ++.. ....-++++|--+|.++++.. .+ +.++
T Consensus 146 ~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rkir 225 (1265)
T KOG1920|consen 146 KPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIR 225 (1265)
T ss_pred cccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEE
Confidence 111 000000 0000 001124589999999998843 23 7999
Q ss_pred EEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeEC---CCcEEEEecCceEe
Q 024451 211 VWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW---DTNLKIWAFGGYRR 265 (267)
Q Consensus 211 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~---dg~i~~w~~~~~~~ 265 (267)
+||.+ ..+..... .-.+.=.+++|-|.|..+|+-.. |+.|.+|--+|+++
T Consensus 226 V~drE--g~Lns~se---~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~h 278 (1265)
T KOG1920|consen 226 VYDRE--GALNSTSE---PVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRH 278 (1265)
T ss_pred Eeccc--chhhcccC---cccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccc
Confidence 99965 22222221 12223367999999999987433 66799998888875
No 348
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.22 E-value=0.0023 Score=58.14 Aligned_cols=104 Identities=27% Similarity=0.364 Sum_probs=71.6
Q ss_pred CCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccC
Q 024451 149 DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQN 228 (267)
Q Consensus 149 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~ 228 (267)
.+..++.|+..|.+-..|....-. . -..+.....+|++++|+.+|+.++.|..+|.|.+||..+.+....+.....
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~-~---~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLG-P---LHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGA 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccc-h---hhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCC
Confidence 345678888888999888764311 1 122334456899999999999999999999999999988777655533333
Q ss_pred CccceEEEEEECCCCCeEEEeECCCcEEEEe
Q 024451 229 SHEGRITCLGLSADGSALCTGSWDTNLKIWA 259 (267)
Q Consensus 229 ~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~ 259 (267)
.+.+.+. +.+..++..+.++...|. +|.
T Consensus 174 p~t~vi~-v~~t~~nS~llt~D~~Gs--f~~ 201 (1206)
T KOG2079|consen 174 PVTGVIF-VGRTSQNSKLLTSDTGGS--FWK 201 (1206)
T ss_pred ccceEEE-EEEeCCCcEEEEccCCCc--eEE
Confidence 4444444 344444557777777776 554
No 349
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.20 E-value=0.11 Score=44.04 Aligned_cols=33 Identities=18% Similarity=0.267 Sum_probs=27.4
Q ss_pred CcEEEEEEccCCCEEEEEEeCCeEEEEeCCccc
Q 024451 186 PHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK 218 (267)
Q Consensus 186 ~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~ 218 (267)
.++..++.||+++++|.-..+|.+.+.+....+
T Consensus 217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~ 249 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSE 249 (410)
T ss_pred CCeEEEEECCCCCEEEEEECCCCEEEEECcccc
Confidence 468999999999999998889999888754433
No 350
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.20 E-value=0.035 Score=47.26 Aligned_cols=138 Identities=15% Similarity=0.178 Sum_probs=73.7
Q ss_pred ceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEE-eCCCCeeeE
Q 024451 96 DVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLF-DIRTGHQLQ 174 (267)
Q Consensus 96 ~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw-d~~~~~~~~ 174 (267)
...++.++| +++.++. +.||.-.++.....+ .. ..+....+.|.+.+ .+|+--..++|+|+ +++.. ...
T Consensus 34 ~p~~ls~np-ngr~v~V-~g~geY~iyt~~~~r---~k---~~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~-~~k 103 (443)
T PF04053_consen 34 YPQSLSHNP-NGRFVLV-CGDGEYEIYTALAWR---NK---AFGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNE-VVK 103 (443)
T ss_dssp --SEEEE-T-TSSEEEE-EETTEEEEEETTTTE---EE---EEEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE--TT-
T ss_pred CCeeEEECC-CCCEEEE-EcCCEEEEEEccCCc---cc---ccCceeEEEEecCc-cEEEEECCCeEEEEEcCccc-cce
Confidence 356777886 4565555 667777777633111 11 12456778998854 56666668899996 33221 111
Q ss_pred EEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCc
Q 024451 175 VYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTN 254 (267)
Q Consensus 175 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~ 254 (267)
.+.. . ..+..+ |. |..|...+ ++.|.+||+.+.+.+..+. -.+|..+.|+++|+++|..+.+ .
T Consensus 104 ~i~~---~---~~~~~I-f~--G~LL~~~~-~~~i~~yDw~~~~~i~~i~------v~~vk~V~Ws~~g~~val~t~~-~ 166 (443)
T PF04053_consen 104 SIKL---P---FSVEKI-FG--GNLLGVKS-SDFICFYDWETGKLIRRID------VSAVKYVIWSDDGELVALVTKD-S 166 (443)
T ss_dssp -------S---S-EEEE-E---SSSEEEEE-TTEEEEE-TTT--EEEEES------S-E-EEEEE-TTSSEEEEE-S--S
T ss_pred EEcC---C---cccceE-Ec--CcEEEEEC-CCCEEEEEhhHcceeeEEe------cCCCcEEEEECCCCEEEEEeCC-e
Confidence 1110 0 113333 22 67666664 4589999999998887652 2248899999999999988755 6
Q ss_pred EEEEec
Q 024451 255 LKIWAF 260 (267)
Q Consensus 255 i~~w~~ 260 (267)
+.|+++
T Consensus 167 i~il~~ 172 (443)
T PF04053_consen 167 IYILKY 172 (443)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 666654
No 351
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.15 E-value=0.075 Score=41.13 Aligned_cols=106 Identities=18% Similarity=0.249 Sum_probs=67.6
Q ss_pred EEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcE
Q 024451 109 MFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHV 188 (267)
Q Consensus 109 ~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v 188 (267)
++..|+-.+.+.--|...++...+.+.+ ..+.+-+.- -|++++.|+..|.+-+.+.+++.+...+..... -.+
T Consensus 25 ~v~igSHs~~~~avd~~sG~~~We~ilg--~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~----vk~ 97 (354)
T KOG4649|consen 25 LVVIGSHSGIVIAVDPQSGNLIWEAILG--VRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILET----VKV 97 (354)
T ss_pred EEEEecCCceEEEecCCCCcEEeehhhC--ceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhh----hcc
Confidence 3444454555555554433322222222 233332222 577899999999999999999987766543221 122
Q ss_pred EEEEEccCCCEEEEEEeCCeEEEEeCCccceeee
Q 024451 189 TSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLN 222 (267)
Q Consensus 189 ~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~ 222 (267)
. ...++++..+..|+.|++++..|.++...+.+
T Consensus 98 ~-a~~d~~~glIycgshd~~~yalD~~~~~cVyk 130 (354)
T KOG4649|consen 98 R-AQCDFDGGLIYCGSHDGNFYALDPKTYGCVYK 130 (354)
T ss_pred c-eEEcCCCceEEEecCCCcEEEecccccceEEe
Confidence 2 23578999999999999999999988776654
No 352
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.12 E-value=0.14 Score=43.70 Aligned_cols=213 Identities=12% Similarity=0.124 Sum_probs=103.6
Q ss_pred ceeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEE-eCCCCe
Q 024451 2 TCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLW-DITTGL 80 (267)
Q Consensus 2 ~~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iw-d~~~~~ 80 (267)
.+.++|+|+.++. +.||.-.+|.... ... ...+.-....|.+.+ .+|.-...++|+|+ ++....
T Consensus 37 ~ls~npngr~v~V-~g~geY~iyt~~~---------~r~---k~~G~g~~~vw~~~n--~yAv~~~~~~I~I~kn~~~~~ 101 (443)
T PF04053_consen 37 SLSHNPNGRFVLV-CGDGEYEIYTALA---------WRN---KAFGSGLSFVWSSRN--RYAVLESSSTIKIYKNFKNEV 101 (443)
T ss_dssp EEEE-TTSSEEEE-EETTEEEEEETTT---------TEE---EEEEE-SEEEE-TSS--EEEEE-TTS-EEEEETTEE-T
T ss_pred eEEECCCCCEEEE-EcCCEEEEEEccC---------Ccc---cccCceeEEEEecCc--cEEEEECCCeEEEEEcCcccc
Confidence 4678999998887 6688888887321 111 112344456777743 36666668889996 332211
Q ss_pred eEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCC
Q 024451 81 RTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDG 160 (267)
Q Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~ 160 (267)
...+. ... .+.. +.+ +.+++..+. +.|.+||..+ .+.++.+.. .+|..+.|++++++++..+.+
T Consensus 102 -~k~i~----~~~--~~~~--If~--G~LL~~~~~-~~i~~yDw~~-~~~i~~i~v--~~vk~V~Ws~~g~~val~t~~- 165 (443)
T PF04053_consen 102 -VKSIK----LPF--SVEK--IFG--GNLLGVKSS-DFICFYDWET-GKLIRRIDV--SAVKYVIWSDDGELVALVTKD- 165 (443)
T ss_dssp -T---------SS---EEE--EE---SSSEEEEET-TEEEEE-TTT---EEEEESS---E-EEEEE-TTSSEEEEE-S--
T ss_pred -ceEEc----CCc--ccce--EEc--CcEEEEECC-CCEEEEEhhH-cceeeEEec--CCCcEEEEECCCCEEEEEeCC-
Confidence 11111 111 1122 221 445555444 4899999975 456666653 348999999999999988866
Q ss_pred cEEEEeCCCC-----------eeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCC
Q 024451 161 TCRLFDIRTG-----------HQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNS 229 (267)
Q Consensus 161 ~i~iwd~~~~-----------~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~ 229 (267)
.+.|.+.+.. ....... +. ...|.+.+|.-+ -++.+. .. .++-+- .++.. .+. .
T Consensus 166 ~i~il~~~~~~~~~~~~~g~e~~f~~~~-E~----~~~IkSg~W~~d-~fiYtT-~~-~lkYl~--~Ge~~-~i~----~ 230 (443)
T PF04053_consen 166 SIYILKYNLEAVAAIPEEGVEDAFELIH-EI----SERIKSGCWVED-CFIYTT-SN-HLKYLV--NGETG-IIA----H 230 (443)
T ss_dssp SEEEEEE-HHHHHHBTTTB-GGGEEEEE-EE-----S--SEEEEETT-EEEEE--TT-EEEEEE--TTEEE-EEE----E
T ss_pred eEEEEEecchhcccccccCchhceEEEE-Ee----cceeEEEEEEcC-EEEEEc-CC-eEEEEE--cCCcc-eEE----E
Confidence 6666654322 0111111 10 124677778765 333333 23 554432 22111 111 1
Q ss_pred ccceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451 230 HEGRITCLGLSADGSALCTGSWDTNLKIWAF 260 (267)
Q Consensus 230 ~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~ 260 (267)
-..++.=+...|..+.+.....|+.+..+.+
T Consensus 231 ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~l 261 (443)
T PF04053_consen 231 LDKPLYLLGYLPKENRLYLIDRDGNVISYEL 261 (443)
T ss_dssp -SS--EEEEEETTTTEEEEE-TT--EEEEE-
T ss_pred cCCceEEEEEEccCCEEEEEECCCCEEEEEE
Confidence 2345666777787777887888888888764
No 353
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.12 E-value=0.13 Score=43.25 Aligned_cols=210 Identities=13% Similarity=0.131 Sum_probs=108.4
Q ss_pred eEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEE------E--------------------------------eCCcc
Q 024451 48 YVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS------V--------------------------------FGGEF 89 (267)
Q Consensus 48 ~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~------~--------------------------------~~~~~ 89 (267)
.|+.+.|.++.. .|+.|...|.|.||......... . .+...
T Consensus 3 ~v~~vs~a~~t~-Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETL-ELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTT-EEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCc-eEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 578888988654 58888889998888653211000 0 00001
Q ss_pred ccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEE--eec------cccceeEEEEec-----CC---CEE
Q 024451 90 QSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRT--FHG------HEGDVNTVKFFP-----DG---NRF 153 (267)
Q Consensus 90 ~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~--~~~------~~~~i~~~~~~~-----~~---~~l 153 (267)
.....+.|.+++.+ +-.+++.|..+|.+.|.|+|.. ..+.. +.. ....+.++.|.- |+ -.+
T Consensus 82 ~~~~~g~vtal~~S--~iGFvaigy~~G~l~viD~RGP-avI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L 158 (395)
T PF08596_consen 82 LDAKQGPVTALKNS--DIGFVAIGYESGSLVVIDLRGP-AVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICL 158 (395)
T ss_dssp E---S-SEEEEEE---BTSEEEEEETTSEEEEEETTTT-EEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEE
T ss_pred eeccCCcEeEEecC--CCcEEEEEecCCcEEEEECCCC-eEEeeccccccccccccccCeeEEEEEEEecCCCcccceEE
Confidence 12346778888775 4457889999999999999743 22221 111 123467777752 22 357
Q ss_pred EEeeCCCcEEEEeCCC--CeeeE-EEEeecCCCCCCcEEEEE-EccC--------------------CCEEEEEEeCCeE
Q 024451 154 GTGSDDGTCRLFDIRT--GHQLQ-VYYQQHGENEIPHVTSIA-FSIS--------------------GRLLFAGYSNGDC 209 (267)
Q Consensus 154 ~~~~~d~~i~iwd~~~--~~~~~-~~~~~~~~~~~~~v~~~~-~s~~--------------------~~~l~~g~~dg~i 209 (267)
.+|...|.+.+|.+.. +.... .+.... .....++..+. |+.+ -+.++...++..+
T Consensus 159 ~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~-~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~i 237 (395)
T PF08596_consen 159 LVGTNSGNVLTFKILPSSNGRFSVQFAGAT-TNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDI 237 (395)
T ss_dssp EEEETTSEEEEEEEEE-GGG-EEEEEEEEE---SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEE
T ss_pred EEEeCCCCEEEEEEecCCCCceEEEEeecc-ccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccce
Confidence 8889999999998752 11111 111111 11223344333 3211 1224444567889
Q ss_pred EEEeCCccceeeecccccCCccceEEEEEE-----CCCCCeEEEeECCCcEEEEecCceEec
Q 024451 210 YVWDTLLAKVVLNLGSLQNSHEGRITCLGL-----SADGSALCTGSWDTNLKIWAFGGYRRV 266 (267)
Q Consensus 210 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~-----~p~~~~l~sgs~dg~i~~w~~~~~~~~ 266 (267)
+++.....+...+.. ...-....+.+ ...+..|++-..+|.|++|.+=+|+.+
T Consensus 238 rv~~~~~~k~~~K~~----~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei 295 (395)
T PF08596_consen 238 RVFKPPKSKGAHKSF----DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEI 295 (395)
T ss_dssp EEE-TT---EEEEE-----SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EE
T ss_pred EEEeCCCCcccceee----ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHh
Confidence 999987766554432 11112233344 235678888889999999998777653
No 354
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.98 E-value=0.051 Score=36.34 Aligned_cols=93 Identities=25% Similarity=0.371 Sum_probs=59.8
Q ss_pred CCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCC
Q 024451 105 SNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENE 184 (267)
Q Consensus 105 ~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 184 (267)
.....|+.|+.|..||+|+-. ..+..+.. ...|.++.-... ..|+-+-.+|+|-+|+-.. .+..... .
T Consensus 13 dg~~eLlvGs~D~~IRvf~~~---e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~--RlWRiKS---K-- 80 (111)
T PF14783_consen 13 DGENELLVGSDDFEIRVFKGD---EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ--RLWRIKS---K-- 80 (111)
T ss_pred CCcceEEEecCCcEEEEEeCC---cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCcc--eeeeecc---C--
Confidence 344678999999999999743 34555543 456777776554 6799999999999997532 2222211 1
Q ss_pred CCcEEEEE-EccCC---CEEEEEEeCCeEE
Q 024451 185 IPHVTSIA-FSISG---RLLFAGYSNGDCY 210 (267)
Q Consensus 185 ~~~v~~~~-~s~~~---~~l~~g~~dg~i~ 210 (267)
..+.++. ++.++ .-|++|.++|.|-
T Consensus 81 -~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 81 -NQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred -CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 1244444 44443 3688999998774
No 355
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.98 E-value=0.003 Score=47.53 Aligned_cols=106 Identities=10% Similarity=0.129 Sum_probs=60.3
Q ss_pred CeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccc
Q 024451 59 DTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE 138 (267)
Q Consensus 59 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 138 (267)
...++.|+.||.|.+|+....-...- .. ..-...|.+.......+.+..+++.|+.|+.|+.+. .+.......|+
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d---~~-~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p-~k~~g~~g~h~ 144 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSD---RV-CSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKP-NKVLGYVGQHN 144 (238)
T ss_pred CceEEeecccceEEEecCCccchHHH---hh-hcccccceeccccccccceeEEeccCCceeeecccc-Cceeeeecccc
Confidence 34688999999999998762110000 00 011122322222222334778899999999999864 44444444565
Q ss_pred -cceeEEEEecCCCEEEEe--eCCCcEEEEeCCC
Q 024451 139 -GDVNTVKFFPDGNRFGTG--SDDGTCRLFDIRT 169 (267)
Q Consensus 139 -~~i~~~~~~~~~~~l~~~--~~d~~i~iwd~~~ 169 (267)
.++..+.....+..++.+ |.|..++.|++..
T Consensus 145 ~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 145 FESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred CCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 444445444455555555 6666666666653
No 356
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.94 E-value=0.19 Score=42.17 Aligned_cols=199 Identities=14% Similarity=0.129 Sum_probs=120.4
Q ss_pred EEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEec--CCCeEEEEeCCCcc
Q 024451 51 CCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGS--CDSTARLWDTRVAS 128 (267)
Q Consensus 51 ~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~--~d~~i~iwd~~~~~ 128 (267)
.++.++.+.+..+....++.|.+.|..+........ .+. ....+.+++....++++-. .++.+.+.|.....
T Consensus 78 ~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~----vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~ 151 (381)
T COG3391 78 GVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIP----VGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK 151 (381)
T ss_pred ceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEee----ecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCe
Confidence 456666666556666667899999977655444332 112 3456777777767777766 46888888876433
Q ss_pred cceEEeeccccceeEEEEecCCCEEEEe-eCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeC-
Q 024451 129 RAVRTFHGHEGDVNTVKFFPDGNRFGTG-SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN- 206 (267)
Q Consensus 129 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d- 206 (267)
.......-..+ ..+++.|+|+.+... ..++.+.+.|........ -..............+.+++++..+.+....
T Consensus 152 -~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~ 228 (381)
T COG3391 152 -VTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGS 228 (381)
T ss_pred -EEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccC
Confidence 33333222234 789999999865544 578999999977654331 1000001111234677899999977665443
Q ss_pred --CeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeEC-CCcEEEEecC
Q 024451 207 --GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW-DTNLKIWAFG 261 (267)
Q Consensus 207 --g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~-dg~i~~w~~~ 261 (267)
+.+...|............. .-. .-..++++|+|+++.+... .+.+.+-+..
T Consensus 229 ~~~~v~~id~~~~~v~~~~~~~--~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~ 283 (381)
T COG3391 229 GSNNVLKIDTATGNVTATDLPV--GSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGA 283 (381)
T ss_pred CCceEEEEeCCCceEEEecccc--ccC-CCCceeECCCCCEEEEEecCCCeEEEEeCC
Confidence 58888998776655431111 111 2345788999998877633 3556555543
No 357
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.81 E-value=0.06 Score=47.22 Aligned_cols=95 Identities=17% Similarity=0.074 Sum_probs=63.4
Q ss_pred CCeEEEEeCCC----C-eeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCccc-----------ce
Q 024451 68 DQTCVLWDITT----G-LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR-----------AV 131 (267)
Q Consensus 68 d~~v~iwd~~~----~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~-----------~~ 131 (267)
++.|.+.|..+ + .....++ -.....-+.++|....+++++..+.++.|.|+..... ..
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIP------VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vv 368 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVP------VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVV 368 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEE------CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEE
Confidence 67899999887 2 2222222 1233456778887777777888899999999864321 11
Q ss_pred EEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCC
Q 024451 132 RTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT 169 (267)
Q Consensus 132 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 169 (267)
....- ...-...+|.++|+...+..-|..|-.||+..
T Consensus 369 aevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 369 AEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred Eeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 11111 11123568889999899999999999999875
No 358
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.77 E-value=0.28 Score=41.64 Aligned_cols=170 Identities=15% Similarity=0.105 Sum_probs=84.5
Q ss_pred eEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEee--cccccee-----
Q 024451 70 TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH--GHEGDVN----- 142 (267)
Q Consensus 70 ~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~--~~~~~i~----- 142 (267)
.|+||+.. |..+..+.. .+ +.+..+.|... ..++.-..||.++++|+.. .. ...+. .....|.
T Consensus 62 ~I~iys~s-G~ll~~i~w----~~-~~iv~~~wt~~--e~LvvV~~dG~v~vy~~~G-~~-~fsl~~~i~~~~v~e~~i~ 131 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPW----DS-GRIVGMGWTDD--EELVVVQSDGTVRVYDLFG-EF-QFSLGEEIEEEKVLECRIF 131 (410)
T ss_pred EEEEECCC-CCEeEEEEE----CC-CCEEEEEECCC--CeEEEEEcCCEEEEEeCCC-ce-eechhhhccccCccccccc
Confidence 58888875 333443321 12 68889999753 3456778999999999852 22 11110 0111222
Q ss_pred EEEEecCCCEEEEeeCCCcEEEEeCCCCe-eeEEEEeecCCCC----CCcEEE-EEEccCCCEEEEEEeCCeEEEEeCCc
Q 024451 143 TVKFFPDGNRFGTGSDDGTCRLFDIRTGH-QLQVYYQQHGENE----IPHVTS-IAFSISGRLLFAGYSNGDCYVWDTLL 216 (267)
Q Consensus 143 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~----~~~v~~-~~~s~~~~~l~~g~~dg~i~i~d~~~ 216 (267)
...+..+| ++.-..++.+.+..--... ............. ...... ..++.+....+....++.+++.+...
T Consensus 132 ~~~~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~ 209 (410)
T PF04841_consen 132 AIWFYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENS 209 (410)
T ss_pred ccccCCCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccc
Confidence 22333344 2222333443333211111 0001100000000 000011 23444555555555556666444322
Q ss_pred cceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEe
Q 024451 217 AKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWA 259 (267)
Q Consensus 217 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~ 259 (267)
.+. ....+++..+++||+|+++|.-..+|.+.+..
T Consensus 210 ~~~--------i~~~~~i~~iavSpng~~iAl~t~~g~l~v~s 244 (410)
T PF04841_consen 210 FKQ--------IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVS 244 (410)
T ss_pred ccc--------ccCCCCeEEEEECCCCCEEEEEECCCCEEEEE
Confidence 111 11245899999999999999999999988875
No 359
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.73 E-value=0.0063 Score=33.97 Aligned_cols=33 Identities=15% Similarity=0.396 Sum_probs=29.0
Q ss_pred ccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCe
Q 024451 138 EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH 171 (267)
Q Consensus 138 ~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 171 (267)
...|.++.|+|..+++|.+..||.|.++.+ +++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 356899999999999999999999999998 443
No 360
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.72 E-value=0.2 Score=39.21 Aligned_cols=170 Identities=11% Similarity=0.082 Sum_probs=94.1
Q ss_pred CCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeecc-ccceeEEEEecCCCEEEEeeCCCcEEEEeCCCC
Q 024451 92 GHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH-EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG 170 (267)
Q Consensus 92 ~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 170 (267)
+-...+..+++.+..+.++++....+.|...+.. .+.++.+.-. .+....+++..++.++++--.++.+.++++...
T Consensus 19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~--G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~ 96 (248)
T PF06977_consen 19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD--GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDD 96 (248)
T ss_dssp T--S-EEEEEEETTTTEEEEEETTTTEEEEEETT----EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE---
T ss_pred CccCCccccEEcCCCCeEEEEECCCCEEEEEcCC--CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEecc
Confidence 3344588899998888899999999999888864 3455554322 355788999877766666556889999888432
Q ss_pred ee---e---EEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCc---cceeee--cccc--cCCccceEEEE
Q 024451 171 HQ---L---QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL---AKVVLN--LGSL--QNSHEGRITCL 237 (267)
Q Consensus 171 ~~---~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~---~~~~~~--~~~~--~~~~~~~v~~~ 237 (267)
.. . ..+.-..........-.++|++.++.|+++-...-..+|.... ...+.. ...+ .......+.++
T Consensus 97 ~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l 176 (248)
T PF06977_consen 97 TTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGL 176 (248)
T ss_dssp -TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EE
T ss_pred ccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccce
Confidence 11 1 1111111111223578999999988888887777666766543 111100 0000 11233457889
Q ss_pred EECCC-CCeEEEeECCCcEEEEecCce
Q 024451 238 GLSAD-GSALCTGSWDTNLKIWAFGGY 263 (267)
Q Consensus 238 ~~~p~-~~~l~sgs~dg~i~~w~~~~~ 263 (267)
+++|. +.+++.......+..++..|.
T Consensus 177 ~~~p~t~~lliLS~es~~l~~~d~~G~ 203 (248)
T PF06977_consen 177 SYDPRTGHLLILSDESRLLLELDRQGR 203 (248)
T ss_dssp EEETTTTEEEEEETTTTEEEEE-TT--
T ss_pred EEcCCCCeEEEEECCCCeEEEECCCCC
Confidence 99986 456666666777777776554
No 361
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.63 E-value=0.012 Score=53.78 Aligned_cols=102 Identities=22% Similarity=0.322 Sum_probs=70.2
Q ss_pred EEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcE
Q 024451 109 MFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHV 188 (267)
Q Consensus 109 ~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v 188 (267)
.++.|+..|.+-..|....-.+..+-..-.++|.+++|+.+|..++.|-.+|.|.+||...++....+.. +...+. .+
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e-~~ap~t-~v 178 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITE-HGAPVT-GV 178 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeee-cCCccc-eE
Confidence 4667778888888877532222111112247899999999999999999999999999998887766544 222222 34
Q ss_pred EEEEEccCCCEEEEEEeCCeEEEEeC
Q 024451 189 TSIAFSISGRLLFAGYSNGDCYVWDT 214 (267)
Q Consensus 189 ~~~~~s~~~~~l~~g~~dg~i~i~d~ 214 (267)
--+.+..++..++++...|. +|.+
T Consensus 179 i~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 179 IFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEEeCCCcEEEEccCCCc--eEEE
Confidence 44555666678888888886 5553
No 362
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.57 E-value=0.23 Score=44.09 Aligned_cols=158 Identities=15% Similarity=0.118 Sum_probs=80.3
Q ss_pred ceEEEEEeCCCCeEEEEec-----CCC--eEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCC-CcEEEEeC
Q 024451 96 DVLSVSISGSNSRMFVSGS-----CDS--TARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD-GTCRLFDI 167 (267)
Q Consensus 96 ~i~~~~~~~~~~~~~~s~~-----~d~--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-~~i~iwd~ 167 (267)
.+.+..+++...+...+.. .|. .|.+++.. ........+ .....-.|+|+|+.+++.... ...++.+.
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g--g~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG--GVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC--CcceeeecC--CCCCCceECCCCCceEEEecCcceEEEecc
Confidence 4567777875554433331 243 44444532 222222222 237788999998887776543 22333322
Q ss_pred CCCeeeEEEEeecCC---CCCCcEEEEEEccCCCEEEEEEeCCeEEE---EeCCccc-eeeecccccCCccceEEEEEEC
Q 024451 168 RTGHQLQVYYQQHGE---NEIPHVTSIAFSISGRLLFAGYSNGDCYV---WDTLLAK-VVLNLGSLQNSHEGRITCLGLS 240 (267)
Q Consensus 168 ~~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~g~~dg~i~i---~d~~~~~-~~~~~~~~~~~~~~~v~~~~~~ 240 (267)
....++....-.... .....|..+.|||||..++.-. +|.|++ -....++ .+.....+...-...+..+.|.
T Consensus 427 ~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~ 505 (591)
T PRK13616 427 PATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWR 505 (591)
T ss_pred CCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEe
Confidence 111111111100000 1123589999999999888765 577777 3322222 1111111112223345789999
Q ss_pred CCCCeEEEeECCCcEEEEe
Q 024451 241 ADGSALCTGSWDTNLKIWA 259 (267)
Q Consensus 241 p~~~~l~sgs~dg~i~~w~ 259 (267)
+++.++ .+..++...+|.
T Consensus 506 ~~~~L~-V~~~~~~~~v~~ 523 (591)
T PRK13616 506 TGDSLV-VGRSDPEHPVWY 523 (591)
T ss_pred cCCEEE-EEecCCCCceEE
Confidence 988855 555555555553
No 363
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.25 E-value=0.24 Score=39.92 Aligned_cols=109 Identities=17% Similarity=0.164 Sum_probs=58.7
Q ss_pred ccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeC-Cc
Q 024451 138 EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT-LL 216 (267)
Q Consensus 138 ~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~-~~ 216 (267)
.+.+..+.-.++|++++++..-.-..-||.-... +..+.......+.++.|+|++...+++ ..|.|++=+. ..
T Consensus 144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~-----w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~ 217 (302)
T PF14870_consen 144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT-----WQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDD 217 (302)
T ss_dssp ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS------EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTE
T ss_pred cceeEeEEECCCCcEEEEECcccEEEEecCCCcc-----ceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCC
Confidence 4567888888999999888777777788754211 111222233569999999998876655 7888888762 22
Q ss_pred cceeeecccccCCccceEEEEEECCCCCeEEEeECC
Q 024451 217 AKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD 252 (267)
Q Consensus 217 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d 252 (267)
.+.-.........-.-.+..+++.++++..|+|+..
T Consensus 218 ~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G 253 (302)
T PF14870_consen 218 GETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG 253 (302)
T ss_dssp EEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT
T ss_pred ccccccccCCcccCceeeEEEEecCCCCEEEEeCCc
Confidence 211111000011222348899999999888877654
No 364
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.18 E-value=0.6 Score=38.75 Aligned_cols=234 Identities=15% Similarity=0.178 Sum_probs=107.1
Q ss_pred CCCCCeEEEc---------cCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeC
Q 024451 6 SPTGQSVACG---------GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI 76 (267)
Q Consensus 6 ~~~g~~l~~~---------~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~ 76 (267)
|||+++++.. +..+...+||+.... ...+......+....|+|++. .++-. .++.|.+++.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~--------~~~l~~~~~~~~~~~~sP~g~-~~~~v-~~~nly~~~~ 70 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGE--------ITPLTPPPPKLQDAKWSPDGK-YIAFV-RDNNLYLRDL 70 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTE--------EEESS-EETTBSEEEE-SSST-EEEEE-ETTEEEEESS
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCc--------eEECcCCccccccceeecCCC-eeEEE-ecCceEEEEC
Confidence 5788877763 234567788876521 111111245677789999865 44444 4678999998
Q ss_pred CCCeeEEEeC-Ccc--ccCC-----c----cceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeecccc---ce
Q 024451 77 TTGLRTSVFG-GEF--QSGH-----T----ADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEG---DV 141 (267)
Q Consensus 77 ~~~~~~~~~~-~~~--~~~~-----~----~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~---~i 141 (267)
.++.....-. +.. ..|- + +.-..+-|+|.+.+++...-.+..|+.+.+. ....... .+
T Consensus 71 ~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~-------~~~~~~~~yp~~ 143 (353)
T PF00930_consen 71 ATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLP-------DYSPPDSQYPEV 143 (353)
T ss_dssp TTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEE-------EESSSTESS-EE
T ss_pred CCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEee-------ccCCccccCCcc
Confidence 7764433211 100 0000 0 1123466776544333222233333333221 1111111 34
Q ss_pred eEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCC-----eEEEEeCCc
Q 024451 142 NTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG-----DCYVWDTLL 216 (267)
Q Consensus 142 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg-----~i~i~d~~~ 216 (267)
..+.+-..|..-. .-.+.|+|+.+++....-...........+..+.|++++..++....++ .+.++|..+
T Consensus 144 ~~~~YPk~G~~np----~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~t 219 (353)
T PF00930_consen 144 ESIRYPKAGDPNP----RVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDAST 219 (353)
T ss_dssp EEEE--BTTS-------EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECT
T ss_pred cccccCCCCCcCC----ceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCC
Confidence 5555533333221 1157778888776542221110112234688999999999555544432 566677655
Q ss_pred cceeeecccccCCccceEEEEEEC-CCCC-eEEEeECCCcEEEEec
Q 024451 217 AKVVLNLGSLQNSHEGRITCLGLS-ADGS-ALCTGSWDTNLKIWAF 260 (267)
Q Consensus 217 ~~~~~~~~~~~~~~~~~v~~~~~~-p~~~-~l~sgs~dg~i~~w~~ 260 (267)
++............-..-....+. +++. +|.....||.-.||.+
T Consensus 220 g~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~ 265 (353)
T PF00930_consen 220 GETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLY 265 (353)
T ss_dssp TTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEE
T ss_pred CceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEE
Confidence 433211111111111111234443 5544 4545557787666643
No 365
>PHA02713 hypothetical protein; Provisional
Probab=96.15 E-value=0.87 Score=40.37 Aligned_cols=64 Identities=5% Similarity=0.003 Sum_probs=32.5
Q ss_pred CCCEEEEeeCC------CcEEEEeCCC-CeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCC--eEEEEeCCcc
Q 024451 149 DGNRFGTGSDD------GTCRLFDIRT-GHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG--DCYVWDTLLA 217 (267)
Q Consensus 149 ~~~~l~~~~~d------~~i~iwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg--~i~i~d~~~~ 217 (267)
+++..+.||.+ ..+..||.++ .+-... .. ..........+ .-++.+.++|+.+| .+..||..+.
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~--~~-m~~~r~~~~~~--~~~~~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELI--TT-TESRLSALHTI--LHDNTIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEc--cc-cCcccccceeE--EECCEEEEEeeecceeehhhcCcccc
Confidence 46666777654 2467788876 332110 00 00011111222 23677888888777 5566665543
No 366
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=95.89 E-value=0.76 Score=37.46 Aligned_cols=166 Identities=17% Similarity=0.222 Sum_probs=85.7
Q ss_pred EEEecCCCeeEEEeeCCCeEEEEeCCC-CeeEEEeCCccccCCccceE-EEEEeCCCCeEEEEecCCCeEEEEeCCCccc
Q 024451 52 CQYVPDEDTHLITSSGDQTCVLWDITT-GLRTSVFGGEFQSGHTADVL-SVSISGSNSRMFVSGSCDSTARLWDTRVASR 129 (267)
Q Consensus 52 ~~~~~~~~~~l~s~~~d~~v~iwd~~~-~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~ 129 (267)
...-|.+.+-+.+-+.||++.-..+.. ++........+. ...+.+. .-.+....+++ .--+.+|.|+--|+.....
T Consensus 140 ~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~-~~~dp~f~~~~~~~~~~~~-~F~Sy~G~v~~~dlsg~~~ 217 (342)
T PF06433_consen 140 WLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFD-PDDDPLFEHPAYSRDGGRL-YFVSYEGNVYSADLSGDSA 217 (342)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESS-TTTS-B-S--EEETTTTEE-EEEBTTSEEEEEEETTSSE
T ss_pred EEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccC-CCCcccccccceECCCCeE-EEEecCCEEEEEeccCCcc
Confidence 333455545688889999998888763 322211100111 1122222 22233233333 2356677777766643221
Q ss_pred -ceEEee---c-------cccceeEEEEecCCCEEEEe---eCCC-------cEEEEeCCCCeeeEEEEeecCCCCCCcE
Q 024451 130 -AVRTFH---G-------HEGDVNTVKFFPDGNRFGTG---SDDG-------TCRLFDIRTGHQLQVYYQQHGENEIPHV 188 (267)
Q Consensus 130 -~~~~~~---~-------~~~~i~~~~~~~~~~~l~~~---~~d~-------~i~iwd~~~~~~~~~~~~~~~~~~~~~v 188 (267)
...... . -.+.-.-+++++..+.|... +.++ .|.++|+.+++.+..+.-.+ ++
T Consensus 218 ~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~------~~ 291 (342)
T PF06433_consen 218 KFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEH------PI 291 (342)
T ss_dssp EEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEE------EE
T ss_pred cccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCC------cc
Confidence 011110 0 01122347777765554432 2222 48999999988876654322 35
Q ss_pred EEEEEccCCC-EEEEEE-eCCeEEEEeCCccceeeeccc
Q 024451 189 TSIAFSISGR-LLFAGY-SNGDCYVWDTLLAKVVLNLGS 225 (267)
Q Consensus 189 ~~~~~s~~~~-~l~~g~-~dg~i~i~d~~~~~~~~~~~~ 225 (267)
.++..+.+.. .|++.+ .++.|.+||..+++.+..+..
T Consensus 292 ~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 292 DSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp SEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred ceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 6888887765 565544 578999999999988776643
No 367
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.84 E-value=0.58 Score=41.57 Aligned_cols=110 Identities=14% Similarity=0.131 Sum_probs=65.4
Q ss_pred eEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEc--cCCCEEEEEEeCCeEEEEeCCccc-
Q 024451 142 NTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFS--ISGRLLFAGYSNGDCYVWDTLLAK- 218 (267)
Q Consensus 142 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~~g~~dg~i~i~d~~~~~- 218 (267)
.-+.-+.-++..++-+....+.|||.+.+... +... ..+...|..+.|. |+++.+++-+-.+.|.+|......
T Consensus 33 ~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE--~~~~--f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 33 SLISGSSIKKIAVVDSSRSELTIWDTRSGVLE--YEES--FSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred ceEeecccCcEEEEECCCCEEEEEEcCCcEEE--Eeee--ecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 33444444555455455568999999876522 1111 1234568899885 788888877778888898643211
Q ss_pred --------eeeecccccCCcc-ceEEEEEECCCCCeEEEeECCCcEEEEe
Q 024451 219 --------VVLNLGSLQNSHE-GRITCLGLSADGSALCTGSWDTNLKIWA 259 (267)
Q Consensus 219 --------~~~~~~~~~~~~~-~~v~~~~~~p~~~~l~sgs~dg~i~~w~ 259 (267)
.+..+. + ..|. .+|....|.++|.+++.+ ++.+.|++
T Consensus 109 ~~~~p~w~~i~~i~-i-~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~d 154 (631)
T PF12234_consen 109 TNKGPSWAPIRKID-I-SSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFD 154 (631)
T ss_pred hcCCcccceeEEEE-e-ecCCCCCccceeEecCCeEEEEe--CCEEEEEC
Confidence 111110 1 1122 468889999998776643 35666664
No 368
>PHA02713 hypothetical protein; Provisional
Probab=95.83 E-value=1.2 Score=39.44 Aligned_cols=181 Identities=7% Similarity=0.031 Sum_probs=84.4
Q ss_pred eeEEEeeCC------CeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCC-----eEEEEeCCCcc
Q 024451 60 THLITSSGD------QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS-----TARLWDTRVAS 128 (267)
Q Consensus 60 ~~l~s~~~d------~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~-----~i~iwd~~~~~ 128 (267)
...+.||.+ ..+..||..+..-...-+ .. ....-..++.. ++++++.||.++ .+..||....
T Consensus 305 ~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~--m~--~~R~~~~~~~~--~g~IYviGG~~~~~~~~sve~Ydp~~~- 377 (557)
T PHA02713 305 EIIIAGGYNFNNPSLNKVYKINIENKIHVELPP--MI--KNRCRFSLAVI--DDTIYAIGGQNGTNVERTIECYTMGDD- 377 (557)
T ss_pred EEEEEcCCCCCCCccceEEEEECCCCeEeeCCC--Cc--chhhceeEEEE--CCEEEEECCcCCCCCCceEEEEECCCC-
Confidence 456666653 347778877654322111 10 11111222232 467888888764 3677887632
Q ss_pred cceEEeeccccce--eEEEEecCCCEEEEeeCCC-----------------------cEEEEeCCCCeeeEEEEeecCCC
Q 024451 129 RAVRTFHGHEGDV--NTVKFFPDGNRFGTGSDDG-----------------------TCRLFDIRTGHQLQVYYQQHGEN 183 (267)
Q Consensus 129 ~~~~~~~~~~~~i--~~~~~~~~~~~l~~~~~d~-----------------------~i~iwd~~~~~~~~~~~~~~~~~ 183 (267)
.......-..+. .++. .-+++..+.||.++ .+..||+++.+-.. ....
T Consensus 378 -~W~~~~~mp~~r~~~~~~-~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~-----v~~m 450 (557)
T PHA02713 378 -KWKMLPDMPIALSSYGMC-VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWET-----LPNF 450 (557)
T ss_pred -eEEECCCCCcccccccEE-EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEee-----cCCC
Confidence 122221111111 1122 22567777777553 46678877653211 1111
Q ss_pred CCCcEEEEEEccCCCEEEEEEeC------CeEEEEeCCc-c--ceeeecccccCCccceEEEEEECCCCCeEEEeECCC-
Q 024451 184 EIPHVTSIAFSISGRLLFAGYSN------GDCYVWDTLL-A--KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT- 253 (267)
Q Consensus 184 ~~~~v~~~~~s~~~~~l~~g~~d------g~i~i~d~~~-~--~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg- 253 (267)
..+........-++.+.+.|+.+ ..+..||..+ . ..+..+.. .....-.+. -+|++.+.|+.|+
T Consensus 451 ~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~----~r~~~~~~~--~~~~iyv~Gg~~~~ 524 (557)
T PHA02713 451 WTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTES----RLSALHTIL--HDNTIMMLHCYESY 524 (557)
T ss_pred CcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCc----ccccceeEE--ECCEEEEEeeecce
Confidence 11111111123356666666543 2467788765 2 22222211 111111122 2688889999888
Q ss_pred -cEEEEec
Q 024451 254 -NLKIWAF 260 (267)
Q Consensus 254 -~i~~w~~ 260 (267)
.+-.|+.
T Consensus 525 ~~~e~yd~ 532 (557)
T PHA02713 525 MLQDTFNV 532 (557)
T ss_pred eehhhcCc
Confidence 4444443
No 369
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.73 E-value=0.3 Score=41.77 Aligned_cols=116 Identities=16% Similarity=0.194 Sum_probs=70.4
Q ss_pred EEEEEEecCCCe------eEEEeeCCCeEEEEeCCCCeeEEEeCCcccc-CCccceEEEEEeCCCCeEEEEecCCCeEEE
Q 024451 49 VSCCQYVPDEDT------HLITSSGDQTCVLWDITTGLRTSVFGGEFQS-GHTADVLSVSISGSNSRMFVSGSCDSTARL 121 (267)
Q Consensus 49 v~~~~~~~~~~~------~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~s~~~d~~i~i 121 (267)
|.-+.+.|+... .=+.|=.|+.|.-||.+-+........+..+ .......|.+. .....++.|+.+|.||+
T Consensus 378 i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aT--T~sG~IvvgS~~GdIRL 455 (644)
T KOG2395|consen 378 INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFAT--TESGYIVVGSLKGDIRL 455 (644)
T ss_pred cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceeee--cCCceEEEeecCCcEEe
Confidence 556666664321 1123556888999998743221111011111 11222334433 34457899999999999
Q ss_pred EeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCC
Q 024451 122 WDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR 168 (267)
Q Consensus 122 wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~ 168 (267)
||- ........+.+-..+|.-+..+.+|+.+++.+ +..+.+.++.
T Consensus 456 Ydr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 456 YDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred ehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 996 34444455667788999999999999887655 5577777754
No 370
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=95.67 E-value=0.83 Score=36.27 Aligned_cols=233 Identities=12% Similarity=0.164 Sum_probs=116.8
Q ss_pred CCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEe
Q 024451 6 SPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVF 85 (267)
Q Consensus 6 ~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 85 (267)
...++.|+.|..+| +.+|+...+.. ..+. .+...|..+...|+-+.+++- .|+.+.++++..-......
T Consensus 4 ~~~~~~L~vGt~~G-l~~~~~~~~~~------~~~i--~~~~~I~ql~vl~~~~~llvL--sd~~l~~~~L~~l~~~~~~ 72 (275)
T PF00780_consen 4 DSWGDRLLVGTEDG-LYVYDLSDPSK------PTRI--LKLSSITQLSVLPELNLLLVL--SDGQLYVYDLDSLEPVSTS 72 (275)
T ss_pred ccCCCEEEEEECCC-EEEEEecCCcc------ceeE--eecceEEEEEEecccCEEEEE--cCCccEEEEchhhcccccc
Confidence 34678899998888 88888832111 1111 233348888888865443333 3599999998753322210
Q ss_pred C-----C----ccccCCccceEEEE-EeCCCCeEEEEecCCCeEEEEeCCCcc----cceEEeeccccceeEEEEecCCC
Q 024451 86 G-----G----EFQSGHTADVLSVS-ISGSNSRMFVSGSCDSTARLWDTRVAS----RAVRTFHGHEGDVNTVKFFPDGN 151 (267)
Q Consensus 86 ~-----~----~~~~~~~~~i~~~~-~~~~~~~~~~s~~~d~~i~iwd~~~~~----~~~~~~~~~~~~i~~~~~~~~~~ 151 (267)
. . .........+...+ .....+...+.......|.+|...... +..+.+. -...+.++.|. ++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~ 149 (275)
T PF00780_consen 73 APLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GN 149 (275)
T ss_pred ccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CC
Confidence 0 0 00011222344433 112223333445555588888765421 2333333 23678888988 45
Q ss_pred EEEEeeCCCcEEEEeCCCCeeeEEEEeecCC-------CCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecc
Q 024451 152 RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE-------NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLG 224 (267)
Q Consensus 152 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~ 224 (267)
.++.+..+ ...+.|+.++.....+...... ....++..+... ++.+|++- +..-.+.|. .++... ..
T Consensus 150 ~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~-~G~~~r-~~ 223 (275)
T PF00780_consen 150 KICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNK-NGEPSR-KS 223 (275)
T ss_pred EEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcC-CCCcCc-cc
Confidence 67776654 5777898866544332111100 011223333333 45666543 233333443 222221 00
Q ss_pred cccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCce
Q 024451 225 SLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGY 263 (267)
Q Consensus 225 ~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~ 263 (267)
.+ .......++++. ..||+.-+ ++.|.||++...
T Consensus 224 ~i--~W~~~p~~~~~~--~pyli~~~-~~~iEV~~~~~~ 257 (275)
T PF00780_consen 224 TI--QWSSAPQSVAYS--SPYLIAFS-SNSIEVRSLETG 257 (275)
T ss_pred EE--EcCCchhEEEEE--CCEEEEEC-CCEEEEEECcCC
Confidence 11 123344556654 34776554 466999987543
No 371
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.63 E-value=0.68 Score=39.31 Aligned_cols=101 Identities=25% Similarity=0.291 Sum_probs=59.2
Q ss_pred eEEEEecCCCEEEEe-eCC----CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCC---------
Q 024451 142 NTVKFFPDGNRFGTG-SDD----GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG--------- 207 (267)
Q Consensus 142 ~~~~~~~~~~~l~~~-~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg--------- 207 (267)
....++|++++++-+ +.. -.++++|+++++.+....... ....+.|.++++.++-...+.
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~------~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~ 200 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP------KFSSVSWSDDGKGFFYTRFDEDQRTSDSGY 200 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE------ESEEEEECTTSSEEEEEECSTTTSS-CCGC
T ss_pred eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc------ccceEEEeCCCCEEEEEEeCcccccccCCC
Confidence 457889999988754 333 359999999987654322211 113489999988765554322
Q ss_pred --eEEEEeCCcccee--eecccccCCccc-eEEEEEECCCCCeEEEeEC
Q 024451 208 --DCYVWDTLLAKVV--LNLGSLQNSHEG-RITCLGLSADGSALCTGSW 251 (267)
Q Consensus 208 --~i~i~d~~~~~~~--~~~~~~~~~~~~-~v~~~~~~p~~~~l~sgs~ 251 (267)
.|+.|.+-+.... .-+. ..... ....+..++++++|+..+.
T Consensus 201 ~~~v~~~~~gt~~~~d~lvfe---~~~~~~~~~~~~~s~d~~~l~i~~~ 246 (414)
T PF02897_consen 201 PRQVYRHKLGTPQSEDELVFE---EPDEPFWFVSVSRSKDGRYLFISSS 246 (414)
T ss_dssp CEEEEEEETTS-GGG-EEEEC----TTCTTSEEEEEE-TTSSEEEEEEE
T ss_pred CcEEEEEECCCChHhCeeEEe---ecCCCcEEEEEEecCcccEEEEEEE
Confidence 3677775443211 1111 11222 2567889999999875444
No 372
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.62 E-value=0.41 Score=40.41 Aligned_cols=94 Identities=17% Similarity=0.229 Sum_probs=57.5
Q ss_pred EEEEecCCCEEEEeeCCCcEEE---EeCCC-C---eeeEEEEe-ecCCCCCCcEEEEEEc-----------cCCCEEEEE
Q 024451 143 TVKFFPDGNRFGTGSDDGTCRL---FDIRT-G---HQLQVYYQ-QHGENEIPHVTSIAFS-----------ISGRLLFAG 203 (267)
Q Consensus 143 ~~~~~~~~~~l~~~~~d~~i~i---wd~~~-~---~~~~~~~~-~~~~~~~~~v~~~~~s-----------~~~~~l~~g 203 (267)
.++.+|+++++|.+..++.+.+ |+... + ........ .-.......|+++.+- ++...+++|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4677889999998888877666 64421 1 11111111 1111111456666542 345789999
Q ss_pred EeCCeEEEEeCCccceeeecccccCCccceEEEEEECC
Q 024451 204 YSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA 241 (267)
Q Consensus 204 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p 241 (267)
.++|.|++|.. ++..+.. +.-|+++|..+.+..
T Consensus 86 ~ssG~vrfyte-~G~LL~~----Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 86 TSSGYVRFYTE-NGVLLLS----QLLHEEPVLKIKCRS 118 (415)
T ss_pred ecccEEEEEec-cchHHHH----HhcCccceEEEEecc
Confidence 99999999985 4444432 235888898888753
No 373
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.55 E-value=1.6 Score=38.80 Aligned_cols=221 Identities=13% Similarity=0.195 Sum_probs=105.3
Q ss_pred CCCeEEEccCCC------eEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCC------CeEEEEe
Q 024451 8 TGQSVACGGLDS------VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGD------QTCVLWD 75 (267)
Q Consensus 8 ~g~~l~~~~~d~------~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d------~~v~iwd 75 (267)
.+.+++.||.++ ++..||..... ......+. +...-.++.... +...++||.| .++-.||
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~-----w~~~a~m~-~~r~~~~~~~~~--~~lYv~GG~~~~~~~l~~ve~YD 355 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNE-----WSSLAPMP-SPRCRVGVAVLN--GKLYVVGGYDSGSDRLSSVERYD 355 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCc-----EeecCCCC-cccccccEEEEC--CEEEEEccccCCCcccceEEEec
Confidence 356778888874 66777765431 11111111 112233444444 3567788888 3466788
Q ss_pred CCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCe-----EEEEeCCCcccceEEeeccccceeEEEE-ecC
Q 024451 76 ITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST-----ARLWDTRVASRAVRTFHGHEGDVNTVKF-FPD 149 (267)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~-----i~iwd~~~~~~~~~~~~~~~~~i~~~~~-~~~ 149 (267)
..+..-....+ ... ...-..++.. ++.+++.||.||. +-.||..... ................ .-+
T Consensus 356 ~~~~~W~~~a~--M~~--~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~--W~~va~m~~~r~~~gv~~~~ 427 (571)
T KOG4441|consen 356 PRTNQWTPVAP--MNT--KRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNK--WTPVAPMLTRRSGHGVAVLG 427 (571)
T ss_pred CCCCceeccCC--ccC--ccccceeEEE--CCEEEEEeccccccccccEEEecCCCCc--ccccCCCCcceeeeEEEEEC
Confidence 77654322111 100 0111122222 5678899999865 4455554221 1111111112222222 226
Q ss_pred CCEEEEeeCCC------cEEEEeCCCCeeeEEEEeecCCCCCCc-EEEEEEccCCCEEEEEEeCC-----eEEEEeCCcc
Q 024451 150 GNRFGTGSDDG------TCRLFDIRTGHQLQVYYQQHGENEIPH-VTSIAFSISGRLLFAGYSNG-----DCYVWDTLLA 217 (267)
Q Consensus 150 ~~~l~~~~~d~------~i~iwd~~~~~~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~g~~dg-----~i~i~d~~~~ 217 (267)
|...++||.|+ ++..||..+++-... .+..... -..+ -.-++.+.+.|+.|+ .+..||..+.
T Consensus 428 g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~-----~~M~~~R~~~g~-a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~ 501 (571)
T KOG4441|consen 428 GKLYIIGGGDGSSNCLNSVECYDPETNTWTLI-----APMNTRRSGFGV-AVLNGKIYVVGGFDGTSALSSVERYDPETN 501 (571)
T ss_pred CEEEEEcCcCCCccccceEEEEcCCCCceeec-----CCcccccccceE-EEECCEEEEECCccCCCccceEEEEcCCCC
Confidence 77788888554 467788877543211 1111111 1112 234667777777666 3667887654
Q ss_pred ceeeecccccCCccceEEEEEECCCCCeEEEeECCCc
Q 024451 218 KVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTN 254 (267)
Q Consensus 218 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~ 254 (267)
+-..- ... ......+-... -+++..+.|+.||.
T Consensus 502 ~W~~v-~~m-~~~rs~~g~~~--~~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 502 QWTMV-APM-TSPRSAVGVVV--LGGKLYAVGGFDGN 534 (571)
T ss_pred ceeEc-ccC-ccccccccEEE--ECCEEEEEecccCc
Confidence 32211 100 11111111111 25677788888775
No 374
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=95.54 E-value=1.3 Score=37.57 Aligned_cols=151 Identities=10% Similarity=0.156 Sum_probs=79.4
Q ss_pred CCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEE---EecCCCeeEEEeeCCCeEEEEeCCCCe----
Q 024451 8 TGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQ---YVPDEDTHLITSSGDQTCVLWDITTGL---- 80 (267)
Q Consensus 8 ~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~---~~~~~~~~l~s~~~d~~v~iwd~~~~~---- 80 (267)
+...|+.|+.+|.++||+...........-+. ..-+.+|-.+. |.+..+...++-=.-+.+.+|.+....
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE---~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~ 112 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLE---TQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVE 112 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEE---EecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcc
Confidence 34789999999999999975432221111111 12234454443 323222223333456667777762110
Q ss_pred -----eE-EEeCCccccCCccceEEEEEe---CCC-CeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCC
Q 024451 81 -----RT-SVFGGEFQSGHTADVLSVSIS---GSN-SRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG 150 (267)
Q Consensus 81 -----~~-~~~~~~~~~~~~~~i~~~~~~---~~~-~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~ 150 (267)
.. ..+...+ .....++++- ... ..++..-+.||.+.+++-+. .....+....----.+.|.+..
T Consensus 113 ~g~~~~L~~~yeh~l----~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~--~~f~~~lp~~llPgPl~Y~~~t 186 (418)
T PF14727_consen 113 HGNQYQLELIYEHSL----QRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQES--FAFSRFLPDFLLPGPLCYCPRT 186 (418)
T ss_pred cCcEEEEEEEEEEec----ccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCc--EEEEEEcCCCCCCcCeEEeecC
Confidence 11 1111000 1112222222 222 35677889999999998642 2222222221112357888888
Q ss_pred CEEEEeeCCCcEEEEeC
Q 024451 151 NRFGTGSDDGTCRLFDI 167 (267)
Q Consensus 151 ~~l~~~~~d~~i~iwd~ 167 (267)
+.|++++.+..+.-|..
T Consensus 187 Dsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 187 DSFVTASSSWTLECYKY 203 (418)
T ss_pred CEEEEecCceeEEEecH
Confidence 88999998888888775
No 375
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=95.46 E-value=1 Score=35.80 Aligned_cols=145 Identities=14% Similarity=0.151 Sum_probs=78.7
Q ss_pred CeeEEEeeCCCeEEEEeCCC-CeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEE----
Q 024451 59 DTHLITSSGDQTCVLWDITT-GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRT---- 133 (267)
Q Consensus 59 ~~~l~s~~~d~~v~iwd~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~---- 133 (267)
++.|+.|+.+| +.+++... ....... +...|..+.+.+..+.+++- .|+.+.++++..-......
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~-------~~~~I~ql~vl~~~~~llvL--sd~~l~~~~L~~l~~~~~~~~~~ 76 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDPSKPTRIL-------KLSSITQLSVLPELNLLLVL--SDGQLYVYDLDSLEPVSTSAPLA 76 (275)
T ss_pred CCEEEEEECCC-EEEEEecCCccceeEe-------ecceEEEEEEecccCEEEEE--cCCccEEEEchhhcccccccccc
Confidence 35688889999 88998832 2222221 23348888888765544443 3489999997532211100
Q ss_pred ---------eeccccceeEEE--EecCCCEEEEeeCCCcEEEEeCCCCeeeE-EEEeecCCCCCCcEEEEEEccCCCEEE
Q 024451 134 ---------FHGHEGDVNTVK--FFPDGNRFGTGSDDGTCRLFDIRTGHQLQ-VYYQQHGENEIPHVTSIAFSISGRLLF 201 (267)
Q Consensus 134 ---------~~~~~~~i~~~~--~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~ 201 (267)
.......+...+ -.+.+...++....++|.+|......... ...++.. -...+..++|. ++.++
T Consensus 77 ~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~--lp~~~~~i~~~--~~~i~ 152 (275)
T PF00780_consen 77 FPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS--LPDPPSSIAFL--GNKIC 152 (275)
T ss_pred ccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE--cCCCcEEEEEe--CCEEE
Confidence 111222344444 11233444444555699998876531111 1111111 12357888887 56777
Q ss_pred EEEeCCeEEEEeCCccc
Q 024451 202 AGYSNGDCYVWDTLLAK 218 (267)
Q Consensus 202 ~g~~dg~i~i~d~~~~~ 218 (267)
.|..++ ..+.|+.+..
T Consensus 153 v~~~~~-f~~idl~~~~ 168 (275)
T PF00780_consen 153 VGTSKG-FYLIDLNTGS 168 (275)
T ss_pred EEeCCc-eEEEecCCCC
Confidence 776554 6788877543
No 376
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.45 E-value=1.1 Score=36.32 Aligned_cols=114 Identities=19% Similarity=0.189 Sum_probs=65.8
Q ss_pred ceEEeeccccceeEEEEecCCCEEEEee-CCCcEEEEeCCC--Ce---eeEEEEeecCCCCCCcEEEEEEccCCCEEEEE
Q 024451 130 AVRTFHGHEGDVNTVKFFPDGNRFGTGS-DDGTCRLFDIRT--GH---QLQVYYQQHGENEIPHVTSIAFSISGRLLFAG 203 (267)
Q Consensus 130 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~iwd~~~--~~---~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g 203 (267)
..+.+..+-..-+.++|+|+++.|..+- ..+.|.-|++.. +. ....+.. ..+.+..-.++.+.+|.+-+++
T Consensus 154 ~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~---~~~~G~PDG~~vDadG~lw~~a 230 (307)
T COG3386 154 VVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDF---DEEPGLPDGMAVDADGNLWVAA 230 (307)
T ss_pred EEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEc---cCCCCCCCceEEeCCCCEEEec
Confidence 3444444455568899999998776654 457788887752 11 1111111 1112233456677788877555
Q ss_pred EeCC-eEEEEeCCccceeeecccccCCccceEEEEEEC-CCCCeEEEeEC
Q 024451 204 YSNG-DCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLS-ADGSALCTGSW 251 (267)
Q Consensus 204 ~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~l~sgs~ 251 (267)
..+| .|..|+.. ++.+.... + ....+++++|- |+.+.|...+.
T Consensus 231 ~~~g~~v~~~~pd-G~l~~~i~-l---P~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 231 VWGGGRVVRFNPD-GKLLGEIK-L---PVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred ccCCceEEEECCC-CcEEEEEE-C---CCCCCccceEeCCCcCEEEEEec
Confidence 4444 89999977 66554432 1 11456777774 66666654443
No 377
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.31 E-value=1.7 Score=38.74 Aligned_cols=103 Identities=15% Similarity=0.231 Sum_probs=62.1
Q ss_pred eEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEe--cCCCEEEEeeCCCcEEEEeCCC-----C----eeeEEE
Q 024451 108 RMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFF--PDGNRFGTGSDDGTCRLFDIRT-----G----HQLQVY 176 (267)
Q Consensus 108 ~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~d~~i~iwd~~~-----~----~~~~~~ 176 (267)
+..+..+....+.|||.+.........-...+.|..++|. |+++.+.+.|-.+.|.++--.. . ..+..+
T Consensus 42 k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i 121 (631)
T PF12234_consen 42 KIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKI 121 (631)
T ss_pred cEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEE
Confidence 3333444445799999875432111111346789999994 6888888888889999986321 0 111111
Q ss_pred EeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeC
Q 024451 177 YQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDT 214 (267)
Q Consensus 177 ~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~ 214 (267)
.-. .....+|.+.+|-++|..+++. +.++.++|-
T Consensus 122 ~i~--~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 122 DIS--SHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred Eee--cCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 111 1122357888999888777654 467888874
No 378
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.20 E-value=1.2 Score=35.11 Aligned_cols=153 Identities=16% Similarity=0.149 Sum_probs=84.9
Q ss_pred ceEEEEEeCCCCeEEEEe--cCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEe-CCCCee
Q 024451 96 DVLSVSISGSNSRMFVSG--SCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFD-IRTGHQ 172 (267)
Q Consensus 96 ~i~~~~~~~~~~~~~~s~--~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd-~~~~~~ 172 (267)
.+.+.++++....+.+.. .....+.++... ......+. ...+..-.|++++...+....+...+++. ..+++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~--g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLT--GGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeecc--CCccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence 456677776555444444 233355555433 22222222 23677789999987777766666777764 333332
Q ss_pred eEEEEeecCCCCCCcEEEEEEccCCCEEEEEE---eCCeEEEEeCCcc-----ceeeecccccCCccceEEEEEECCCCC
Q 024451 173 LQVYYQQHGENEIPHVTSIAFSISGRLLFAGY---SNGDCYVWDTLLA-----KVVLNLGSLQNSHEGRITCLGLSADGS 244 (267)
Q Consensus 173 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~---~dg~i~i~d~~~~-----~~~~~~~~~~~~~~~~v~~~~~~p~~~ 244 (267)
........ . ....|.++.+||+|..++.-. .++.|++=-+... ..+.............+..++|.+++.
T Consensus 101 ~~~~v~~~-~-~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~ 178 (253)
T PF10647_consen 101 EPVEVDWP-G-LRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDST 178 (253)
T ss_pred eeEEeccc-c-cCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCE
Confidence 22111111 1 111699999999999887765 3467766543211 111111111122345789999999998
Q ss_pred eEEEeECCCc
Q 024451 245 ALCTGSWDTN 254 (267)
Q Consensus 245 ~l~sgs~dg~ 254 (267)
+++.+...+.
T Consensus 179 L~V~~~~~~~ 188 (253)
T PF10647_consen 179 LVVLGRSAGG 188 (253)
T ss_pred EEEEeCCCCC
Confidence 8776655443
No 379
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.15 E-value=0.99 Score=38.13 Aligned_cols=105 Identities=13% Similarity=0.200 Sum_probs=63.2
Q ss_pred cccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCc
Q 024451 137 HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL 216 (267)
Q Consensus 137 ~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~ 216 (267)
.+++|.++.|++|.+.+|..=.|.+|.+++....+.......++ ......|...+|+.+....+..... +-+|....
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~c-k~k~~~IlGF~W~~s~e~A~i~~~G--~e~y~v~p 141 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQEC-KTKNANILGFCWTSSTEIAFITDQG--IEFYQVLP 141 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHh-ccCcceeEEEEEecCeeEEEEecCC--eEEEEEch
Confidence 45789999999999999999999999999984333222111111 1123358888998775544443333 34444322
Q ss_pred cceeeecccccCCccceEEEEEECCCCCeEE
Q 024451 217 AKVVLNLGSLQNSHEGRITCLGLSADGSALC 247 (267)
Q Consensus 217 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~ 247 (267)
.+. ..++.+.|.-.|.--.|.|+-+.+.
T Consensus 142 ekr---slRlVks~~~nvnWy~yc~et~v~L 169 (657)
T KOG2377|consen 142 EKR---SLRLVKSHNLNVNWYMYCPETAVIL 169 (657)
T ss_pred hhh---hhhhhhhcccCccEEEEccccceEe
Confidence 111 1122245666677777777766543
No 380
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.10 E-value=0.13 Score=27.93 Aligned_cols=32 Identities=22% Similarity=0.492 Sum_probs=25.5
Q ss_pred eeEEEEEEecCCC--eeEEEeeCCCeEEEEeCCC
Q 024451 47 GYVSCCQYVPDED--THLITSSGDQTCVLWDITT 78 (267)
Q Consensus 47 ~~v~~~~~~~~~~--~~l~s~~~d~~v~iwd~~~ 78 (267)
+.|.+|.|+|.+. .+|+-+-.-+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4688999998655 5777777778999999985
No 381
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.91 E-value=0.31 Score=45.48 Aligned_cols=136 Identities=15% Similarity=0.055 Sum_probs=82.3
Q ss_pred EEEEecCCCeEEEEeCCCcccc----eEEeecc------ccceeEEEEecC-CCEEEEeeCCCcEEEEeCCCCeeeEEEE
Q 024451 109 MFVSGSCDSTARLWDTRVASRA----VRTFHGH------EGDVNTVKFFPD-GNRFGTGSDDGTCRLFDIRTGHQLQVYY 177 (267)
Q Consensus 109 ~~~s~~~d~~i~iwd~~~~~~~----~~~~~~~------~~~i~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 177 (267)
.++..+.+-.|..||++.-... .+.+.-| ..-..++.|.|. -...+.+..|+.|++.-+....... .
T Consensus 116 ~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v--~ 193 (1405)
T KOG3630|consen 116 VVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNV--T 193 (1405)
T ss_pred EEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhh--c
Confidence 3444455557889998632211 1111111 122456778775 2346677889999998765322110 0
Q ss_pred eecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeE
Q 024451 178 QQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGS 250 (267)
Q Consensus 178 ~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs 250 (267)
. ..-....++++|+|.|..++.|-.+|.+..|..... ....+.+.+..-..+|.+++|--...+|++-+
T Consensus 194 s---~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le-ik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy~ 262 (1405)
T KOG3630|consen 194 S---FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE-IKSEIPEPPVEENYRVLSVTWLSTQEFLVVYG 262 (1405)
T ss_pred c---cCcccceeeEEeccccceeeEecCCCeEEEeecccc-eeecccCCCcCCCcceeEEEEecceeEEEEec
Confidence 0 011124689999999999999999999999975432 22222333333357899999988788887644
No 382
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=94.84 E-value=1.9 Score=35.74 Aligned_cols=155 Identities=20% Similarity=0.255 Sum_probs=73.6
Q ss_pred eeeEEEEEEecCCCeeEE-EeeCCC---eEEEEeCCCCeeEEEeCCccccCCccceEEEEEe-CCCCeEEEEecCCCeEE
Q 024451 46 KGYVSCCQYVPDEDTHLI-TSSGDQ---TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSIS-GSNSRMFVSGSCDSTAR 120 (267)
Q Consensus 46 ~~~v~~~~~~~~~~~~l~-s~~~d~---~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~s~~~d~~i~ 120 (267)
...+..+.|.+++..+++ ....+. .+.+.|..++....... +...+.-.......+. +.+..++.....||.-+
T Consensus 183 ~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~-e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~h 261 (353)
T PF00930_consen 183 DYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLE-ETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRH 261 (353)
T ss_dssp SEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEE-EESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEE
T ss_pred ccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEE-ecCCcceeeecccccccCCCCEEEEEEEcCCCcE
Confidence 456777888887642333 333333 25566776654333221 1111111111233333 44555555555777655
Q ss_pred EEeCCCcccceEEeeccccceeE-EEEecCCCEEE-EeeCC--CcEEEE--eCCCCeeeEEEEeecCCCCCCcEEEEEEc
Q 024451 121 LWDTRVASRAVRTFHGHEGDVNT-VKFFPDGNRFG-TGSDD--GTCRLF--DIRTGHQLQVYYQQHGENEIPHVTSIAFS 194 (267)
Q Consensus 121 iwd~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~-~~~~d--~~i~iw--d~~~~~~~~~~~~~~~~~~~~~v~~~~~s 194 (267)
++-+.......+.+....-.|.. +.++++++.+. ++..+ ..-.+| +++.+.....+.. .. .....+.||
T Consensus 262 ly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~----~~-~~~~~~~~S 336 (353)
T PF00930_consen 262 LYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTC----ED-GDHYSASFS 336 (353)
T ss_dssp EEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESST----TS-STTEEEEE-
T ss_pred EEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccC----CC-CCceEEEEC
Confidence 55433333334445433445644 67777766543 44432 234444 4441222222211 11 111688999
Q ss_pred cCCCEEEEEEeC
Q 024451 195 ISGRLLFAGYSN 206 (267)
Q Consensus 195 ~~~~~l~~g~~d 206 (267)
|++++++..++.
T Consensus 337 pdg~y~v~~~s~ 348 (353)
T PF00930_consen 337 PDGKYYVDTYSG 348 (353)
T ss_dssp TTSSEEEEEEES
T ss_pred CCCCEEEEEEcC
Confidence 999998876543
No 383
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=94.84 E-value=2.7 Score=37.41 Aligned_cols=147 Identities=14% Similarity=0.201 Sum_probs=71.2
Q ss_pred CCCeEEEccCC------CeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCe-----EEEEeC
Q 024451 8 TGQSVACGGLD------SVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQT-----CVLWDI 76 (267)
Q Consensus 8 ~g~~l~~~~~d------~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~-----v~iwd~ 76 (267)
+|...++||.| .++..||..... ......+.........+.. ++...+.||.||. |-.||.
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~-----W~~~a~M~~~R~~~~v~~l---~g~iYavGG~dg~~~l~svE~YDp 403 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQ-----WTPVAPMNTKRSDFGVAVL---DGKLYAVGGFDGEKSLNSVECYDP 403 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCc-----eeccCCccCccccceeEEE---CCEEEEEeccccccccccEEEecC
Confidence 56889999999 345566654321 1111112111111211222 3456778888864 667777
Q ss_pred CCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCe------EEEEeCCCcccceEEeec---cccceeEEEEe
Q 024451 77 TTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDST------ARLWDTRVASRAVRTFHG---HEGDVNTVKFF 147 (267)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~------i~iwd~~~~~~~~~~~~~---~~~~i~~~~~~ 147 (267)
.+.+-.... ... ....-..++. -++++++.||.++. +..||..... ...... .... ..++.
T Consensus 404 ~~~~W~~va--~m~--~~r~~~gv~~--~~g~iYi~GG~~~~~~~l~sve~YDP~t~~--W~~~~~M~~~R~~-~g~a~- 473 (571)
T KOG4441|consen 404 VTNKWTPVA--PML--TRRSGHGVAV--LGGKLYIIGGGDGSSNCLNSVECYDPETNT--WTLIAPMNTRRSG-FGVAV- 473 (571)
T ss_pred CCCcccccC--CCC--cceeeeEEEE--ECCEEEEEcCcCCCccccceEEEEcCCCCc--eeecCCccccccc-ceEEE-
Confidence 654322111 000 0111122222 35788888886654 4566654321 221111 1111 11222
Q ss_pred cCCCEEEEeeCCC-----cEEEEeCCCCee
Q 024451 148 PDGNRFGTGSDDG-----TCRLFDIRTGHQ 172 (267)
Q Consensus 148 ~~~~~l~~~~~d~-----~i~iwd~~~~~~ 172 (267)
-++...+.||.|+ ++..+|..+.+-
T Consensus 474 ~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W 503 (571)
T KOG4441|consen 474 LNGKIYVVGGFDGTSALSSVERYDPETNQW 503 (571)
T ss_pred ECCEEEEECCccCCCccceEEEEcCCCCce
Confidence 2567778888776 377788876543
No 384
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=94.75 E-value=2.6 Score=36.77 Aligned_cols=158 Identities=18% Similarity=0.249 Sum_probs=85.0
Q ss_pred eEEEeeCCCeEEEEeCCCCeeEEEeCCccc-cCCccceE--EEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeecc
Q 024451 61 HLITSSGDQTCVLWDITTGLRTSVFGGEFQ-SGHTADVL--SVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGH 137 (267)
Q Consensus 61 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~-~~~~~~i~--~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~ 137 (267)
.++.++.++.|.-.|..+++.+..+..... ......+. .+.+. +...++.++.++.|.-+|.++.+...+ +...
T Consensus 63 ~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~--~~~~V~v~~~~g~v~AlD~~TG~~~W~-~~~~ 139 (488)
T cd00216 63 DMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW--DPRKVFFGTFDGRLVALDAETGKQVWK-FGNN 139 (488)
T ss_pred EEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc--cCCeEEEecCCCeEEEEECCCCCEeee-ecCC
Confidence 466778889999999998876654432110 00000110 11111 213456677899999999876543332 2211
Q ss_pred cc-----cee-EEEEecCCCEEEEee---------CCCcEEEEeCCCCeeeEEEEeecCCCCC---------------Cc
Q 024451 138 EG-----DVN-TVKFFPDGNRFGTGS---------DDGTCRLFDIRTGHQLQVYYQQHGENEI---------------PH 187 (267)
Q Consensus 138 ~~-----~i~-~~~~~~~~~~l~~~~---------~d~~i~iwd~~~~~~~~~~~~~~~~~~~---------------~~ 187 (267)
.. .+. +..+. +..++.++ .++.+.-+|..+++.+-.+......... ..
T Consensus 140 ~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 217 (488)
T cd00216 140 DQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT 217 (488)
T ss_pred CCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence 11 011 11222 23444443 3678889999998876544321110000 00
Q ss_pred E-EEEEEccCCCEEEEEEeCC------------------eEEEEeCCccceeeec
Q 024451 188 V-TSIAFSISGRLLFAGYSNG------------------DCYVWDTLLAKVVLNL 223 (267)
Q Consensus 188 v-~~~~~s~~~~~l~~g~~dg------------------~i~i~d~~~~~~~~~~ 223 (267)
+ .+.++++.+..++.++.++ .|+-+|..+++.....
T Consensus 218 vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~ 272 (488)
T cd00216 218 SWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFY 272 (488)
T ss_pred ccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEe
Confidence 1 1234455667788887665 6888999888877654
No 385
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.74 E-value=0.053 Score=48.99 Aligned_cols=124 Identities=19% Similarity=0.184 Sum_probs=66.6
Q ss_pred cccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCC--CeeEEEeCCccccCCccceEEEEEeC--CCCeEEEEecCC
Q 024451 41 MLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITT--GLRTSVFGGEFQSGHTADVLSVSISG--SNSRMFVSGSCD 116 (267)
Q Consensus 41 ~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~s~~~d 116 (267)
..+|-.+.|-.++|...+-..+. -.-|.+.+||++. |+-...+...........+.-|.|.+ .+.-++..+-.+
T Consensus 127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~ 204 (1283)
T KOG1916|consen 127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG 204 (1283)
T ss_pred HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence 34566677777777543322222 2336788998863 21111110000011112223333332 233455666777
Q ss_pred CeEEEEeCCCcccceEEeeccccceeE-----------EEEecCCCEEEEeeCCCcEEEEeCC
Q 024451 117 STARLWDTRVASRAVRTFHGHEGDVNT-----------VKFFPDGNRFGTGSDDGTCRLFDIR 168 (267)
Q Consensus 117 ~~i~iwd~~~~~~~~~~~~~~~~~i~~-----------~~~~~~~~~l~~~~~d~~i~iwd~~ 168 (267)
+.+++....... ...+.+|...+.. ...+|||+.|+.++.||.+++|.+-
T Consensus 205 ~~i~lL~~~ra~--~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 205 GEIRLLNINRAL--RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred CceeEeeechHH--HHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence 888876654222 2333445444332 2468999999999999999999864
No 386
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.58 E-value=0.33 Score=37.31 Aligned_cols=68 Identities=31% Similarity=0.346 Sum_probs=50.2
Q ss_pred EEccCCCEEEEEEeCCeEEEEeCCccceeeeccc---ccC-------CccceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451 192 AFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGS---LQN-------SHEGRITCLGLSADGSALCTGSWDTNLKIWAF 260 (267)
Q Consensus 192 ~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~---~~~-------~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~ 260 (267)
.+..++.++++-+.+|.+++||+...+.+....+ +.. .....|..+.++.+|.-+++-+ +|....|+.
T Consensus 17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 17 FLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence 3567888999999999999999988776543311 111 3456789999999998888766 477777763
No 387
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=94.49 E-value=2.6 Score=35.50 Aligned_cols=201 Identities=21% Similarity=0.256 Sum_probs=123.1
Q ss_pred eeeCCCCC-eEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEee--CCCeEEEEeCCCC
Q 024451 3 CAFSPTGQ-SVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS--GDQTCVLWDITTG 79 (267)
Q Consensus 3 ~~~~~~g~-~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~--~d~~v~iwd~~~~ 79 (267)
++.++.+. .+++...++.+.+.|...... ......+. .-..+++.|+++...++-. .++++.+-|..+.
T Consensus 79 i~v~~~~~~vyv~~~~~~~v~vid~~~~~~------~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~ 150 (381)
T COG3391 79 VAVNPAGNKVYVTTGDSNTVSVIDTATNTV------LGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN 150 (381)
T ss_pred eeeCCCCCeEEEecCCCCeEEEEcCcccce------eeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCC
Confidence 45667775 677777778999999544221 11111122 3345788887755444444 3688888888776
Q ss_pred eeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceE-E---eeccccceeEEEEecCCCEEEE
Q 024451 80 LRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVR-T---FHGHEGDVNTVKFFPDGNRFGT 155 (267)
Q Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~-~---~~~~~~~i~~~~~~~~~~~l~~ 155 (267)
........ +. .+ ..+++.+...+.+++...++.|.+.|.... ...+ . ...-...-..+.+.|+++++..
T Consensus 151 ~~~~~~~v----G~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~-~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV 223 (381)
T COG3391 151 KVTATIPV----GN-TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGN-SVVRGSVGSLVGVGTGPAGIAVDPDGNRVYV 223 (381)
T ss_pred eEEEEEec----CC-Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCc-ceeccccccccccCCCCceEEECCCCCEEEE
Confidence 65544321 11 12 667788777767777778899999996532 1221 0 0111122357889999986655
Q ss_pred eeCC---CcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEe-CCeEEEEeCCccceeee
Q 024451 156 GSDD---GTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYS-NGDCYVWDTLLAKVVLN 222 (267)
Q Consensus 156 ~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~-dg~i~i~d~~~~~~~~~ 222 (267)
.-.. +.+...|..++.....-.. .... ....+..+|+|.++.+... .+.+.+.|..+.+....
T Consensus 224 ~~~~~~~~~v~~id~~~~~v~~~~~~---~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~ 290 (381)
T COG3391 224 ANDGSGSNNVLKIDTATGNVTATDLP---VGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKT 290 (381)
T ss_pred EeccCCCceEEEEeCCCceEEEeccc---cccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeee
Confidence 4433 5899999887765432111 1111 2456788999999888754 48999999877665543
No 388
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=94.38 E-value=2.4 Score=34.84 Aligned_cols=60 Identities=20% Similarity=0.268 Sum_probs=38.3
Q ss_pred CCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcE
Q 024451 196 SGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNL 255 (267)
Q Consensus 196 ~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i 255 (267)
.+.++++....+.|....+.....+.....+......++..+++.|||.+.++-+.+|.|
T Consensus 270 ~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~i 329 (331)
T PF07995_consen 270 RGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKI 329 (331)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTE
T ss_pred cCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeE
Confidence 345666666667777777654433322222224455689999999999999988778876
No 389
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=94.30 E-value=2.9 Score=35.43 Aligned_cols=80 Identities=24% Similarity=0.181 Sum_probs=47.2
Q ss_pred cEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECC--------------CCCeEE-EeEC
Q 024451 187 HVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSA--------------DGSALC-TGSW 251 (267)
Q Consensus 187 ~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p--------------~~~~l~-sgs~ 251 (267)
.+.+++.+|++++.++..+=|.|.++|+.....+.-..+.....-+.+....-.. ...+|+ =+-.
T Consensus 309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyapr 388 (415)
T PF14655_consen 309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPR 388 (415)
T ss_pred eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEecc
Confidence 3678899999998888777799999998776554333221111111111111100 012333 3566
Q ss_pred CCcEEEEecCceEec
Q 024451 252 DTNLKIWAFGGYRRV 266 (267)
Q Consensus 252 dg~i~~w~~~~~~~~ 266 (267)
-|.|.||.+..-+|+
T Consensus 389 Rg~lEvW~~~~g~Rv 403 (415)
T PF14655_consen 389 RGILEVWSMRQGPRV 403 (415)
T ss_pred CCeEEEEecCCCCEE
Confidence 889999998665554
No 390
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.24 E-value=3.5 Score=36.13 Aligned_cols=150 Identities=11% Similarity=0.123 Sum_probs=81.3
Q ss_pred ceEEEEEeCCCCeEEEEec--CCCeEEEEeCCCcccceEEeeccccceeEEEEecCC----CEEEEeeCCCcEEEEeCCC
Q 024451 96 DVLSVSISGSNSRMFVSGS--CDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG----NRFGTGSDDGTCRLFDIRT 169 (267)
Q Consensus 96 ~i~~~~~~~~~~~~~~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~l~~~~~d~~i~iwd~~~ 169 (267)
++.-++|. .+.+.++|.- .+|.+++=|. ..+.++ .-|..+.|.|-+ ..+.+..-.+.|.+|.+..
T Consensus 21 PvhGlaWT-DGkqVvLT~L~l~~gE~kfGds----~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 21 PVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS----KVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred cccceEec-CCCEEEEEeeeeeCCccccCCc----cEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 45566665 2344444432 3344443322 234444 347889998853 2445556678999999752
Q ss_pred C-----eeeEEEEeecCCCCCCc--EEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCC
Q 024451 170 G-----HQLQVYYQQHGENEIPH--VTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD 242 (267)
Q Consensus 170 ~-----~~~~~~~~~~~~~~~~~--v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 242 (267)
. +.+....-+.. +..+ ...+.|+|....|++=.....-.+++++......+.. -...+.|.|.+|.+|
T Consensus 92 s~~e~~K~l~sQtcEi~--e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaD---i~~~G~IhCACWT~D 166 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIR--EPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKAD---IKTSGLIHCACWTKD 166 (671)
T ss_pred Cccccccceeeeeeecc--CCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEe---ccCCceEEEEEecCc
Confidence 1 21111111111 1111 2355699999888876655554566654332211110 134678999999999
Q ss_pred CCeEEEeEC-CCcEEEEe
Q 024451 243 GSALCTGSW-DTNLKIWA 259 (267)
Q Consensus 243 ~~~l~sgs~-dg~i~~w~ 259 (267)
|+-|+.+-. .=.-.+||
T Consensus 167 G~RLVVAvGSsLHSyiWd 184 (671)
T PF15390_consen 167 GQRLVVAVGSSLHSYIWD 184 (671)
T ss_pred CCEEEEEeCCeEEEEEec
Confidence 998765432 22355665
No 391
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=94.18 E-value=2.6 Score=34.45 Aligned_cols=148 Identities=16% Similarity=0.129 Sum_probs=80.0
Q ss_pred eEEEEecCCCeEEEEeCCCcccceE----Eeeccccce-eEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCC
Q 024451 108 RMFVSGSCDSTARLWDTRVASRAVR----TFHGHEGDV-NTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE 182 (267)
Q Consensus 108 ~~~~s~~~d~~i~iwd~~~~~~~~~----~~~~~~~~i-~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 182 (267)
+-|.+-|.||.+.-..+....+... .+.....++ ..-.+...+..++--+-.|.|.--|+....... .......
T Consensus 148 ~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~-~~~~~~~ 226 (342)
T PF06433_consen 148 RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKF-GKPWSLL 226 (342)
T ss_dssp TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEE-EEEEESS
T ss_pred CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccc-cCccccc
Confidence 4467888899888777654333221 122222222 233444444445445778888888876543211 1111000
Q ss_pred -------C-CCCcEEEEEEccCCCEEEEEEe--------C--CeEEEEeCCccceeeecccccCCccceEEEEEECCCCC
Q 024451 183 -------N-EIPHVTSIAFSISGRLLFAGYS--------N--GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGS 244 (267)
Q Consensus 183 -------~-~~~~v~~~~~s~~~~~l~~g~~--------d--g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 244 (267)
+ ..+.-.-+++++..+.|.+--. + -+|.+||+.+.+.+..+. -+.++.+++++-+.+
T Consensus 227 t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~-----l~~~~~Si~Vsqd~~ 301 (342)
T PF06433_consen 227 TDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIP-----LEHPIDSIAVSQDDK 301 (342)
T ss_dssp -HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEE-----EEEEESEEEEESSSS
T ss_pred CccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEe-----CCCccceEEEccCCC
Confidence 0 0112234667765554444211 1 278888998888776542 234677899987665
Q ss_pred -eEEEe-ECCCcEEEEecC
Q 024451 245 -ALCTG-SWDTNLKIWAFG 261 (267)
Q Consensus 245 -~l~sg-s~dg~i~~w~~~ 261 (267)
+|... ..++.+.+||..
T Consensus 302 P~L~~~~~~~~~l~v~D~~ 320 (342)
T PF06433_consen 302 PLLYALSAGDGTLDVYDAA 320 (342)
T ss_dssp -EEEEEETTTTEEEEEETT
T ss_pred cEEEEEcCCCCeEEEEeCc
Confidence 55443 457899999863
No 392
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=94.11 E-value=2.6 Score=34.21 Aligned_cols=193 Identities=16% Similarity=0.183 Sum_probs=95.6
Q ss_pred EecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEE
Q 024451 54 YVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRT 133 (267)
Q Consensus 54 ~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~ 133 (267)
|.+....++.+--..+.|.-|+..++.... +. +...+.++...... ..++++.. .+.+++.+.... +..
T Consensus 32 w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~-~~------~p~~~~~~~~~d~~-g~Lv~~~~--g~~~~~~~~~~~-~t~ 100 (307)
T COG3386 32 WDPDRGALLWVDILGGRIHRLDPETGKKRV-FP------SPGGFSSGALIDAG-GRLIACEH--GVRLLDPDTGGK-ITL 100 (307)
T ss_pred CcCCCCEEEEEeCCCCeEEEecCCcCceEE-EE------CCCCcccceeecCC-CeEEEEcc--ccEEEeccCCce-eEE
Confidence 445544455555667788888887664322 21 11122333333233 33444333 244555432221 121
Q ss_pred ee----cc-ccceeEEEEecCCCEEEEeeC---------CCcEEEEeCC-CCeeeEEEEeecCCCCCCcEEEEEEccCCC
Q 024451 134 FH----GH-EGDVNTVKFFPDGNRFGTGSD---------DGTCRLFDIR-TGHQLQVYYQQHGENEIPHVTSIAFSISGR 198 (267)
Q Consensus 134 ~~----~~-~~~i~~~~~~~~~~~l~~~~~---------d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 198 (267)
+. +. ...-+.+...|+|.+.++... -..-.+|.+. .+........ .......++|||+++
T Consensus 101 ~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~-----~~~~~NGla~SpDg~ 175 (307)
T COG3386 101 LAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDD-----DLTIPNGLAFSPDGK 175 (307)
T ss_pred eccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecC-----cEEecCceEECCCCC
Confidence 11 11 133567888899887665433 1123455555 3333222211 112347899999998
Q ss_pred EEEEEEe-CCeEEEEeCCc--cceeee-cccccCCccceEEEEEECCCCCeEEEeECCC-cEEEEecCc
Q 024451 199 LLFAGYS-NGDCYVWDTLL--AKVVLN-LGSLQNSHEGRITCLGLSADGSALCTGSWDT-NLKIWAFGG 262 (267)
Q Consensus 199 ~l~~g~~-dg~i~i~d~~~--~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg-~i~~w~~~~ 262 (267)
.+....+ .+.|+-|+... ...... .........+.--.++...+|++.+++-.+| .|..|+..|
T Consensus 176 tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pdG 244 (307)
T COG3386 176 TLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPDG 244 (307)
T ss_pred EEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCCC
Confidence 8877765 47888887652 110000 0000011233444566667777776544444 777776654
No 393
>PRK13616 lipoprotein LpqB; Provisional
Probab=93.22 E-value=6 Score=35.44 Aligned_cols=113 Identities=15% Similarity=0.174 Sum_probs=57.8
Q ss_pred ccceeEEEEecCCCEEEEeeCCCcEEE---EeCCCCeeeEE-EEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEe
Q 024451 138 EGDVNTVKFFPDGNRFGTGSDDGTCRL---FDIRTGHQLQV-YYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD 213 (267)
Q Consensus 138 ~~~i~~~~~~~~~~~l~~~~~d~~i~i---wd~~~~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d 213 (267)
.+.|..+.|+|||+.++... ++.|.+ -....+. ... ....-.......+.++.|..++.++ ++..++.-.+|-
T Consensus 447 ~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~-~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~ 523 (591)
T PRK13616 447 PGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ-YALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWY 523 (591)
T ss_pred CCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc-eeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEE
Confidence 45799999999999887655 467766 3333333 111 0000011111235788999998855 555555444554
Q ss_pred CCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEE
Q 024451 214 TLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLK 256 (267)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~ 256 (267)
+.......... .......++.+++=+|+ . +.....++.+.
T Consensus 524 v~vDG~~~~~~-~~~n~~~~v~~vaa~~~-~-iyv~~~~g~~~ 563 (591)
T PRK13616 524 VNLDGSNSDAL-PSRNLSAPVVAVAASPS-T-VYVTDARAVLQ 563 (591)
T ss_pred EecCCcccccc-CCCCccCceEEEecCCc-e-EEEEcCCceEE
Confidence 32221111110 00112456777777763 3 33345555443
No 394
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=93.13 E-value=6.6 Score=35.68 Aligned_cols=110 Identities=16% Similarity=0.181 Sum_probs=66.1
Q ss_pred CCeeEEEeeCCCeEEEEeCCCC------e----e----EEEeCCccccCCccceEEEEEe-CCCCeEEEEecCCCeEEEE
Q 024451 58 EDTHLITSSGDQTCVLWDITTG------L----R----TSVFGGEFQSGHTADVLSVSIS-GSNSRMFVSGSCDSTARLW 122 (267)
Q Consensus 58 ~~~~l~s~~~d~~v~iwd~~~~------~----~----~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~s~~~d~~i~iw 122 (267)
+++.|+.|..||.|.+|..++- . . .....-.+...-...++.++++ ....+++|.++....|.||
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 3468889999999999976320 0 0 0000001111234467888887 1245677778888888888
Q ss_pred eCCCc--ccceEEeeccccceeEEEEecCC---C---EEEEeeCCCcEEEEeC
Q 024451 123 DTRVA--SRAVRTFHGHEGDVNTVKFFPDG---N---RFGTGSDDGTCRLFDI 167 (267)
Q Consensus 123 d~~~~--~~~~~~~~~~~~~i~~~~~~~~~---~---~l~~~~~d~~i~iwd~ 167 (267)
-.... +.....-..|..-|.++.|-++. . .+++++-.|.+.+|++
T Consensus 193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 55421 11111111234458889997643 2 6788899999999887
No 395
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=93.06 E-value=4.1 Score=33.55 Aligned_cols=107 Identities=18% Similarity=0.253 Sum_probs=54.7
Q ss_pred eeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEe--ecCCCCCCcEEEEEEccC---CCEEEEEEe-C--------
Q 024451 141 VNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQ--QHGENEIPHVTSIAFSIS---GRLLFAGYS-N-------- 206 (267)
Q Consensus 141 i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~~---~~~l~~g~~-d-------- 206 (267)
-..++|.|+|.++++ -+.|.|++++ ..+.....+.. ............++++|+ +.+|.+.+. .
T Consensus 4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp EEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred ceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 468999999988775 5599999999 44443122211 111223346789999994 344444333 1
Q ss_pred CeEEEEeCCcc-------ceee-eccc-ccCCccceEEEEEECCCCCeEEEeEC
Q 024451 207 GDCYVWDTLLA-------KVVL-NLGS-LQNSHEGRITCLGLSADGSALCTGSW 251 (267)
Q Consensus 207 g~i~i~d~~~~-------~~~~-~~~~-~~~~~~~~v~~~~~~p~~~~l~sgs~ 251 (267)
..|.-|..... +.+. .... ....|.+ ..|+|.|||.+.++.+.
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g--~~l~fgpDG~LYvs~G~ 133 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNG--GGLAFGPDGKLYVSVGD 133 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-E--EEEEE-TTSEEEEEEB-
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCC--ccccCCCCCcEEEEeCC
Confidence 13333332211 1111 1111 1123543 56999999977666544
No 396
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.91 E-value=6.3 Score=36.12 Aligned_cols=77 Identities=16% Similarity=0.069 Sum_probs=51.0
Q ss_pred CcEEEEEEccCCCEEEEEEeCCeEEEEeCCc-c--------ce--e-ee--c--ccccCCccceEEEEEECCC---CCeE
Q 024451 186 PHVTSIAFSISGRLLFAGYSNGDCYVWDTLL-A--------KV--V-LN--L--GSLQNSHEGRITCLGLSAD---GSAL 246 (267)
Q Consensus 186 ~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~-~--------~~--~-~~--~--~~~~~~~~~~v~~~~~~p~---~~~l 246 (267)
..|..+.++++|.+++..+..|...+.=.+. + +. . .. + ..+...+...|..+.|+|. +.+|
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 3588999999999998888777544432111 0 10 0 00 0 0111234568999999997 4788
Q ss_pred EEeECCCcEEEEecCc
Q 024451 247 CTGSWDTNLKIWAFGG 262 (267)
Q Consensus 247 ~sgs~dg~i~~w~~~~ 262 (267)
+.=..|+++|+|++..
T Consensus 165 ~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISD 180 (717)
T ss_pred EEEecCCEEEEEecCC
Confidence 8888899999999853
No 397
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.82 E-value=4.1 Score=32.50 Aligned_cols=125 Identities=10% Similarity=0.142 Sum_probs=81.7
Q ss_pred ccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCC
Q 024451 136 GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL 215 (267)
Q Consensus 136 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~ 215 (267)
+-...+.++.|+|+.+.|.+......-.++=...|+.+..+.-.. ......+.+..+|++.++--.++.++++.+.
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g----~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTG----FSDPETIEYIGGNQFVIVDERDRALYLFTVD 158 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccc----cCChhHeEEecCCEEEEEehhcceEEEEEEc
Confidence 444559999999999888887777777776666677665443211 1123456777788888777778888888654
Q ss_pred ccceeeeccc----c-cCCc-cceEEEEEECCCCCeEEEeECCCcEEEEecCceE
Q 024451 216 LAKVVLNLGS----L-QNSH-EGRITCLGLSADGSALCTGSWDTNLKIWAFGGYR 264 (267)
Q Consensus 216 ~~~~~~~~~~----~-~~~~-~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~~ 264 (267)
....+..... + ...+ +.....++|.|....|..+=.-.-+.||...+..
T Consensus 159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~ 213 (316)
T COG3204 159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSP 213 (316)
T ss_pred CCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCC
Confidence 4322211110 0 0112 5567889999998888887777778888765543
No 398
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=92.80 E-value=8.4 Score=36.01 Aligned_cols=153 Identities=14% Similarity=0.044 Sum_probs=75.9
Q ss_pred EEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCC---C---EEEEeeCCCcEEEEeCCCCeeeEEEEeecCC
Q 024451 109 MFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDG---N---RFGTGSDDGTCRLFDIRTGHQLQVYYQQHGE 182 (267)
Q Consensus 109 ~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~---~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 182 (267)
.++.++.++.+...++............-...|.|++++|-+ + +++.|..+..+.+.-....-.+....+...+
T Consensus 501 qVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~ 580 (1096)
T KOG1897|consen 501 QVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGE 580 (1096)
T ss_pred EEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCC
Confidence 455566666666666554331111112235678999999742 2 6788876665554433222222222111111
Q ss_pred CCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCC-CCeEEEeECCCcEEEEecC
Q 024451 183 NEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD-GSALCTGSWDTNLKIWAFG 261 (267)
Q Consensus 183 ~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~l~sgs~dg~i~~w~~~ 261 (267)
.-...|.-.+|-.+..+|.++..||.+.-|-+........-..-..-...|+.--.|+.. ..++.++ .|+-..+|..+
T Consensus 581 ~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~-sdrP~viY~~n 659 (1096)
T KOG1897|consen 581 IIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFAL-SDRPTVIYSSN 659 (1096)
T ss_pred ccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEe-CCCCEEEEecC
Confidence 111224444555668899999999998877654332221111000112234444445433 3344433 46666666544
Q ss_pred c
Q 024451 262 G 262 (267)
Q Consensus 262 ~ 262 (267)
+
T Consensus 660 ~ 660 (1096)
T KOG1897|consen 660 G 660 (1096)
T ss_pred C
Confidence 3
No 399
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.79 E-value=3.9 Score=32.10 Aligned_cols=108 Identities=18% Similarity=0.083 Sum_probs=70.6
Q ss_pred cCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEee
Q 024451 56 PDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH 135 (267)
Q Consensus 56 ~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~ 135 (267)
++...+++.||..+.+..-|..++....... -..++.+-+.. - +.+++.|+..|.+.+.+.+++.+... +.
T Consensus 20 ~dskT~v~igSHs~~~~avd~~sG~~~We~i------lg~RiE~sa~v-v-gdfVV~GCy~g~lYfl~~~tGs~~w~-f~ 90 (354)
T KOG4649|consen 20 NDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI------LGVRIECSAIV-V-GDFVVLGCYSGGLYFLCVKTGSQIWN-FV 90 (354)
T ss_pred cCCceEEEEecCCceEEEecCCCCcEEeehh------hCceeeeeeEE-E-CCEEEEEEccCcEEEEEecchhheee-ee
Confidence 4556788889999999888888876443211 11223222221 1 23578899999999999886644332 22
Q ss_pred ccccce-eEEEEecCCCEEEEeeCCCcEEEEeCCCCeee
Q 024451 136 GHEGDV-NTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQL 173 (267)
Q Consensus 136 ~~~~~i-~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 173 (267)
.- +.| ......+++..+.+++.|+.....|.++..++
T Consensus 91 ~~-~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cV 128 (354)
T KOG4649|consen 91 IL-ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCV 128 (354)
T ss_pred eh-hhhccceEEcCCCceEEEecCCCcEEEecccccceE
Confidence 21 222 23344678899999999999999999886654
No 400
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.75 E-value=3.3 Score=39.15 Aligned_cols=102 Identities=16% Similarity=0.130 Sum_probs=66.4
Q ss_pred EEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEE
Q 024451 98 LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYY 177 (267)
Q Consensus 98 ~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 177 (267)
.++.|+|.-....+....|+.|++..+.........+. -...++++.|+|.|+.++.|-..|++.-|-..- +....+.
T Consensus 159 ~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l-eik~~ip 236 (1405)
T KOG3630|consen 159 LKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL-EIKSEIP 236 (1405)
T ss_pred ccccccCCccchhhhhccccchhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeeccc-ceeeccc
Confidence 45566654444567778899999987764433333322 345679999999999999999999998887542 2111111
Q ss_pred eecCCCCCCcEEEEEEccCCCEEEE
Q 024451 178 QQHGENEIPHVTSIAFSISGRLLFA 202 (267)
Q Consensus 178 ~~~~~~~~~~v~~~~~s~~~~~l~~ 202 (267)
.. ...+...|.+++|-....++++
T Consensus 237 ~P-p~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 237 EP-PVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred CC-CcCCCcceeEEEEecceeEEEE
Confidence 11 1112356899999877776655
No 401
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=92.65 E-value=4.5 Score=32.53 Aligned_cols=231 Identities=15% Similarity=0.210 Sum_probs=116.3
Q ss_pred eeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccC-----CeeeEEEEEEecCC-----------CeeEEEee
Q 024451 3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSG-----HKGYVSCCQYVPDE-----------DTHLITSS 66 (267)
Q Consensus 3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~-----h~~~v~~~~~~~~~-----------~~~l~s~~ 66 (267)
++|+|.+..-++....+...+||.......--..++.-.+.. .....+-+.|+... ...++.++
T Consensus 28 ia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif~t 107 (336)
T TIGR03118 28 LSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLFVT 107 (336)
T ss_pred eEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEEEe
Confidence 578999998898888999999998632211111122222221 11234445554321 12367789
Q ss_pred CCCeEEEEeCCCCee-----EEEeCCccccCCccce---EEEEEeCCCCeEEEEecCCCeEEEEeCCCcccce-EEeecc
Q 024451 67 GDQTCVLWDITTGLR-----TSVFGGEFQSGHTADV---LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAV-RTFHGH 137 (267)
Q Consensus 67 ~d~~v~iwd~~~~~~-----~~~~~~~~~~~~~~~i---~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~-~~~~~~ 137 (267)
+||+|.-|...-... ..++. .+....+ ..+.-......++++-=.+++|.++|-....... ..+...
T Consensus 108 EdGTisaW~p~v~~t~~~~~~~~~d----~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP 183 (336)
T TIGR03118 108 EDGTLSGWAPALGTTRMTRAEIVVD----ASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP 183 (336)
T ss_pred CCceEEeecCcCCcccccccEEEEc----cCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence 999999998643221 11221 1111222 2222223345666666678899999854321100 001000
Q ss_pred --------------ccc--eeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEcc------
Q 024451 138 --------------EGD--VNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSI------ 195 (267)
Q Consensus 138 --------------~~~--i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~------ 195 (267)
.+. |+-..-.+++..=+.+-.-|.|-+||+. ++.++.+... ..... ...++..|
T Consensus 184 ~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~-g~LNa--PWG~a~APa~FG~~ 259 (336)
T TIGR03118 184 ALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASS-GRLNA--PWGLAIAPESFGSL 259 (336)
T ss_pred CCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccC-CcccC--CceeeeChhhhCCC
Confidence 000 0111111222222333344689999985 4544444221 11222 23444433
Q ss_pred CCCEEEEEEeCCeEEEEeCCccceeeeccccc--CCccceEEEEEECC
Q 024451 196 SGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ--NSHEGRITCLGLSA 241 (267)
Q Consensus 196 ~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~~v~~~~~~p 241 (267)
.+.+|+.-..||.|..||..+++.+-.+.... ..-...++.|+|-.
T Consensus 260 sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 260 SGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 46677777789999999987776543332110 01123578888865
No 402
>PHA03098 kelch-like protein; Provisional
Probab=92.64 E-value=6.8 Score=34.58 Aligned_cols=144 Identities=10% Similarity=0.025 Sum_probs=64.6
Q ss_pred CeeEEEeeCC-----CeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCC------CeEEEEeCCCc
Q 024451 59 DTHLITSSGD-----QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCD------STARLWDTRVA 127 (267)
Q Consensus 59 ~~~l~s~~~d-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d------~~i~iwd~~~~ 127 (267)
+...+.||.+ ..+..||..+..-...-+ ...+. .-.+++.. ++++++.||.+ ..+..||....
T Consensus 343 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~--lp~~r--~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~ 416 (534)
T PHA03098 343 NRIYVIGGIYNSISLNTVESWKPGESKWREEPP--LIFPR--YNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTN 416 (534)
T ss_pred CEEEEEeCCCCCEecceEEEEcCCCCceeeCCC--cCcCC--ccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCC
Confidence 3456667655 346778877654322111 10111 11122222 45777877742 35777887532
Q ss_pred ccceEEeeccccc--eeEEEEecCCCEEEEeeCCC--------cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCC
Q 024451 128 SRAVRTFHGHEGD--VNTVKFFPDGNRFGTGSDDG--------TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISG 197 (267)
Q Consensus 128 ~~~~~~~~~~~~~--i~~~~~~~~~~~l~~~~~d~--------~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 197 (267)
..........+ -.++. ..+++.++.||.+. .+.+||+.+.+-... ..... .......+. .++
T Consensus 417 --~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~--~~~~~-~r~~~~~~~--~~~ 488 (534)
T PHA03098 417 --KWSKGSPLPISHYGGCAI-YHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTEL--SSLNF-PRINASLCI--FNN 488 (534)
T ss_pred --eeeecCCCCccccCceEE-EECCEEEEECCccCCCCCcccceEEEecCCCCceeeC--CCCCc-ccccceEEE--ECC
Confidence 12222111100 11222 23556667776432 378888876542211 00000 011111222 256
Q ss_pred CEEEEEEeC-----CeEEEEeCCc
Q 024451 198 RLLFAGYSN-----GDCYVWDTLL 216 (267)
Q Consensus 198 ~~l~~g~~d-----g~i~i~d~~~ 216 (267)
..++.|+.+ ..+..||..+
T Consensus 489 ~iyv~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 489 KIYVVGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred EEEEEcCCcCCcccceeEEEeCCC
Confidence 666666543 4677777654
No 403
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=92.61 E-value=6.6 Score=34.32 Aligned_cols=159 Identities=20% Similarity=0.252 Sum_probs=84.0
Q ss_pred eeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceE-EEEEeCCCCeEEEEec---------CCCeEEEEeCCCccc
Q 024451 60 THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVL-SVSISGSNSRMFVSGS---------CDSTARLWDTRVASR 129 (267)
Q Consensus 60 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~s~~---------~d~~i~iwd~~~~~~ 129 (267)
..++.++.++.|..+|.++++.+..+...........+. +..+. ++. ++.++ .++.+.-+|..+...
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~~-v~vg~~~~~~~~~~~~g~v~alD~~TG~~ 187 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--KKL-VIIGSSGAEFFACGVRGALRAYDVETGKL 187 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--CCE-EEEeccccccccCCCCcEEEEEECCCCce
Confidence 357778899999999999998776654221000000011 11122 122 33332 357778888765443
Q ss_pred ceEEeeccc-------------------cce-eEEEEecCCCEEEEeeCCC------------------cEEEEeCCCCe
Q 024451 130 AVRTFHGHE-------------------GDV-NTVKFFPDGNRFGTGSDDG------------------TCRLFDIRTGH 171 (267)
Q Consensus 130 ~~~~~~~~~-------------------~~i-~~~~~~~~~~~l~~~~~d~------------------~i~iwd~~~~~ 171 (267)
..+.-.... ..+ ....+.+.+..++.++.++ .+.-+|.++++
T Consensus 188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence 322111110 011 1234455556677776554 68888999988
Q ss_pred eeEEEEeecCCC-----C-CCcEEEEEEccCCC---EEEEEEeCCeEEEEeCCccceeee
Q 024451 172 QLQVYYQQHGEN-----E-IPHVTSIAFSISGR---LLFAGYSNGDCYVWDTLLAKVVLN 222 (267)
Q Consensus 172 ~~~~~~~~~~~~-----~-~~~v~~~~~s~~~~---~l~~g~~dg~i~i~d~~~~~~~~~ 222 (267)
..-.+....... . .+.+..+. ..++. .+++++.+|.++.+|.++++.+..
T Consensus 268 ~~W~~~~~~~~~~~~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~ 326 (488)
T cd00216 268 VKWFYQTTPHDLWDYDGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISA 326 (488)
T ss_pred EEEEeeCCCCCCcccccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeE
Confidence 765442211100 0 00111111 12333 677888899999999888776543
No 404
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.45 E-value=6.3 Score=34.09 Aligned_cols=139 Identities=14% Similarity=0.180 Sum_probs=73.9
Q ss_pred EEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCC-------EEEEeeCCCcEEEEeCCCCe-eeEEE--Ee
Q 024451 109 MFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGN-------RFGTGSDDGTCRLFDIRTGH-QLQVY--YQ 178 (267)
Q Consensus 109 ~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~l~~~~~d~~i~iwd~~~~~-~~~~~--~~ 178 (267)
++..++....+.-.|++. .+.+.....|..- -+.|.|+.+ .-+.|-.|..|.-.|.+-.. .+... ..
T Consensus 482 i~~dg~~~~kLykmDIEr-GkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKd 558 (776)
T COG5167 482 IYLDGGERDKLYKMDIER-GKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKD 558 (776)
T ss_pred EEecCCCcccceeeeccc-ceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehh
Confidence 334455555566566653 3344444444432 456666432 12334455566556765432 22111 11
Q ss_pred ecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEE
Q 024451 179 QHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 258 (267)
Q Consensus 179 ~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w 258 (267)
....+ ..++ .......++++++..|.|++||....+.-.. .++....|..+..+.+|+++++.+. .++.+-
T Consensus 559 Y~tKn---~Fss-~~tTesGyIa~as~kGDirLyDRig~rAKta----lP~lG~aIk~idvta~Gk~ilaTCk-~yllL~ 629 (776)
T COG5167 559 YKTKN---KFSS-GMTTESGYIAAASRKGDIRLYDRIGKRAKTA----LPGLGDAIKHIDVTANGKHILATCK-NYLLLT 629 (776)
T ss_pred ccccc---cccc-cccccCceEEEecCCCceeeehhhcchhhhc----CcccccceeeeEeecCCcEEEEeec-ceEEEE
Confidence 11111 1112 2234567999999999999999532221111 1345678999999999999876554 455444
Q ss_pred e
Q 024451 259 A 259 (267)
Q Consensus 259 ~ 259 (267)
+
T Consensus 630 d 630 (776)
T COG5167 630 D 630 (776)
T ss_pred e
Confidence 4
No 405
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=92.25 E-value=0.67 Score=25.16 Aligned_cols=30 Identities=17% Similarity=0.268 Sum_probs=24.9
Q ss_pred ceEEEEEECCCC---CeEEEeECCCcEEEEecC
Q 024451 232 GRITCLGLSADG---SALCTGSWDTNLKIWAFG 261 (267)
Q Consensus 232 ~~v~~~~~~p~~---~~l~sgs~dg~i~~w~~~ 261 (267)
+.+.+++|+|+. .+|+-.-.-|.|-|+|..
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R 33 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTR 33 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcc
Confidence 368899999854 488888888999999976
No 406
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.90 E-value=5.4 Score=31.77 Aligned_cols=95 Identities=23% Similarity=0.314 Sum_probs=55.6
Q ss_pred EEEeCCCCeEEEEecCCCe-EEEEeCCCcccc-------eEEeeccccceeEEEEecCCCEEEEeeCC-----CcEEEEe
Q 024451 100 VSISGSNSRMFVSGSCDST-ARLWDTRVASRA-------VRTFHGHEGDVNTVKFFPDGNRFGTGSDD-----GTCRLFD 166 (267)
Q Consensus 100 ~~~~~~~~~~~~s~~~d~~-i~iwd~~~~~~~-------~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~iwd 166 (267)
+.++|...+-++-+-.-|+ ..++|......+ -+.+-+|. .|+|+|.+|...=.| |-|-|||
T Consensus 73 i~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG------vfs~dG~~LYATEndfd~~rGViGvYd 146 (366)
T COG3490 73 IAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG------VFSPDGRLLYATENDFDPNRGVIGVYD 146 (366)
T ss_pred eecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeeccc------ccCCCCcEEEeecCCCCCCCceEEEEe
Confidence 4455555555555555554 456776533322 23445564 689999998765333 5699999
Q ss_pred CCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEE
Q 024451 167 IRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY 204 (267)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~ 204 (267)
.+.+-...--+. ........+.+.+||+.++...
T Consensus 147 ~r~~fqrvgE~~----t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 147 AREGFQRVGEFS----THGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred cccccceecccc----cCCcCcceeEEecCCcEEEEeC
Confidence 875422211111 1222357788999999988763
No 407
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.81 E-value=7.2 Score=33.85 Aligned_cols=26 Identities=19% Similarity=0.097 Sum_probs=20.4
Q ss_pred eeEEEEecCCCEEEEeeCCCcEEEEe
Q 024451 141 VNTVKFFPDGNRFGTGSDDGTCRLFD 166 (267)
Q Consensus 141 i~~~~~~~~~~~l~~~~~d~~i~iwd 166 (267)
|..+..++.|..++-.|.+|-+.+.=
T Consensus 106 V~~vl~s~~GS~VaL~G~~Gi~vMeL 131 (741)
T KOG4460|consen 106 VYQVLLSPTGSHVALIGIKGLMVMEL 131 (741)
T ss_pred EEEEEecCCCceEEEecCCeeEEEEc
Confidence 56778889999999888888766643
No 408
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=91.80 E-value=6 Score=32.06 Aligned_cols=154 Identities=15% Similarity=0.149 Sum_probs=73.1
Q ss_pred cceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEee-ccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeee
Q 024451 95 ADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFH-GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQL 173 (267)
Q Consensus 95 ~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 173 (267)
..+..+... +++++++++.......-||.-. .....+. .-...|..+.|.|++...+. .+.+.|++=+... ..
T Consensus 145 gs~~~~~r~-~dG~~vavs~~G~~~~s~~~G~--~~w~~~~r~~~~riq~~gf~~~~~lw~~-~~Gg~~~~s~~~~--~~ 218 (302)
T PF14870_consen 145 GSINDITRS-SDGRYVAVSSRGNFYSSWDPGQ--TTWQPHNRNSSRRIQSMGFSPDGNLWML-ARGGQIQFSDDPD--DG 218 (302)
T ss_dssp --EEEEEE--TTS-EEEEETTSSEEEEE-TT---SS-EEEE--SSS-EEEEEE-TTS-EEEE-ETTTEEEEEE-TT--EE
T ss_pred ceeEeEEEC-CCCcEEEEECcccEEEEecCCC--ccceEEccCccceehhceecCCCCEEEE-eCCcEEEEccCCC--Cc
Confidence 445555555 4566666666655667787532 1222222 23467999999999877664 4888888876211 11
Q ss_pred EEEEeecC--CCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeEC
Q 024451 174 QVYYQQHG--ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW 251 (267)
Q Consensus 174 ~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~ 251 (267)
..+.+... ......+..++|.+++...++|.. |.+.. ....++.=.+.... ..-...+..+.|.++.+-++.| .
T Consensus 219 ~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l~~-S~DgGktW~~~~~~-~~~~~n~~~i~f~~~~~gf~lG-~ 294 (302)
T PF14870_consen 219 ETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTLLV-STDGGKTWQKDRVG-ENVPSNLYRIVFVNPDKGFVLG-Q 294 (302)
T ss_dssp EEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T-EEE-ESSTTSS-EE-GGG-TTSSS---EEEEEETTEEEEE--S
T ss_pred cccccccCCcccCceeeEEEEecCCCCEEEEeCC-ccEEE-eCCCCccceECccc-cCCCCceEEEEEcCCCceEEEC-C
Confidence 22221111 112234789999999888887754 44432 22222211111000 1223457788887666677765 6
Q ss_pred CCcEEEE
Q 024451 252 DTNLKIW 258 (267)
Q Consensus 252 dg~i~~w 258 (267)
+|.+.=|
T Consensus 295 ~G~ll~~ 301 (302)
T PF14870_consen 295 DGVLLRY 301 (302)
T ss_dssp TTEEEEE
T ss_pred CcEEEEe
Confidence 7877655
No 409
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=91.59 E-value=1.3 Score=34.02 Aligned_cols=74 Identities=11% Similarity=0.177 Sum_probs=47.3
Q ss_pred eeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCccccccc-------CCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeC
Q 024451 4 AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLS-------GHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDI 76 (267)
Q Consensus 4 ~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~ 76 (267)
.+...+.+|++...+|.+.+||+......-....+...+. .....|..+.+..++. -+++-+ +|....|+.
T Consensus 17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~-PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 17 FLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGV-PIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCC-EEEEEe-CCCEEEecc
Confidence 3567889999999999999999976322111112222232 3556788888876554 344443 467788877
Q ss_pred CCC
Q 024451 77 TTG 79 (267)
Q Consensus 77 ~~~ 79 (267)
.-+
T Consensus 95 ~L~ 97 (219)
T PF07569_consen 95 DLG 97 (219)
T ss_pred ccc
Confidence 644
No 410
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.17 E-value=12 Score=34.45 Aligned_cols=77 Identities=13% Similarity=0.215 Sum_probs=50.2
Q ss_pred ceeEEEEecCCCEEEEeeCCCcEEEEeC-CC---------Cee-eEE--EE---eecCCCCCCcEEEEEEccC---CCEE
Q 024451 140 DVNTVKFFPDGNRFGTGSDDGTCRLFDI-RT---------GHQ-LQV--YY---QQHGENEIPHVTSIAFSIS---GRLL 200 (267)
Q Consensus 140 ~i~~~~~~~~~~~l~~~~~d~~i~iwd~-~~---------~~~-~~~--~~---~~~~~~~~~~v~~~~~s~~---~~~l 200 (267)
.|..+.++|+|.+++..|..+- .|-.+ +. ++. +.+ +. ..+..+....|..+.|+|. +..|
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 4788999999999998887554 33333 11 111 110 00 0111233456889999987 5789
Q ss_pred EEEEeCCeEEEEeCCcc
Q 024451 201 FAGYSNGDCYVWDTLLA 217 (267)
Q Consensus 201 ~~g~~dg~i~i~d~~~~ 217 (267)
++=++|+.+++||+...
T Consensus 165 ~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEEecCCEEEEEecCCC
Confidence 99999999999998643
No 411
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.11 E-value=5.7 Score=38.16 Aligned_cols=147 Identities=18% Similarity=0.289 Sum_probs=78.2
Q ss_pred ecCCCeEEEEeCCCcccceEEeeccccceeEEEE-ec-------CCCEEEEeeCCCcEEEEeCC----CCeeeEEEEeec
Q 024451 113 GSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKF-FP-------DGNRFGTGSDDGTCRLFDIR----TGHQLQVYYQQH 180 (267)
Q Consensus 113 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~-~~-------~~~~l~~~~~d~~i~iwd~~----~~~~~~~~~~~~ 180 (267)
-+.|..+.+|+.+... ....+.+-...|..+.. .| .=+++..-..--.|.++-+. ++.. ..+....
T Consensus 95 iTiDn~L~lWny~~~~-e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~-~~f~~~~ 172 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYESDN-ELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGEL-SIFNTSF 172 (1311)
T ss_pred EEeCCeEEEEEcCCCC-ccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcc-cccccce
Confidence 3567789999987533 33344443444544433 12 22333333333344443322 1111 0000000
Q ss_pred -CCCCCCcEEEEEEccCCCEEEEEEeCCeEEEE--eCC-------ccc----------eeeecccccCCccceEEEEEEC
Q 024451 181 -GENEIPHVTSIAFSISGRLLFAGYSNGDCYVW--DTL-------LAK----------VVLNLGSLQNSHEGRITCLGLS 240 (267)
Q Consensus 181 -~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~--d~~-------~~~----------~~~~~~~~~~~~~~~v~~~~~~ 240 (267)
-......|.++....+|+.+++| .||.|+=. ... ..+ .+..+..+...+.++|..+++.
T Consensus 173 ~i~~dg~~V~~I~~t~nGRIF~~G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID 251 (1311)
T KOG1900|consen 173 KISVDGVSVNCITYTENGRIFFAG-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITID 251 (1311)
T ss_pred eeecCCceEEEEEeccCCcEEEee-cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEec
Confidence 00112357788877888888887 55544322 111 011 0111222333567899999999
Q ss_pred CCCCeEEEeECCCcEEEEecCc
Q 024451 241 ADGSALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 241 p~~~~l~sgs~dg~i~~w~~~~ 262 (267)
..-+.|.+-+.-|+|..|++++
T Consensus 252 ~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 252 NSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cccceeeeeccCceEEEEEccC
Confidence 8888999999999999999865
No 412
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=91.06 E-value=9.4 Score=32.91 Aligned_cols=110 Identities=15% Similarity=0.096 Sum_probs=58.2
Q ss_pred ceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEE--EEeecCCCCCCcEEEEEEccCC------CEEEEEEe------
Q 024451 140 DVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQV--YYQQHGENEIPHVTSIAFSISG------RLLFAGYS------ 205 (267)
Q Consensus 140 ~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~--~~~~~~~~~~~~v~~~~~s~~~------~~l~~g~~------ 205 (267)
.-..++|.|++++|++--..|.|++++..++..... +..............++++|+- .+|...++
T Consensus 31 ~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~~ 110 (454)
T TIGR03606 31 KPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGDK 110 (454)
T ss_pred CceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCCC
Confidence 457899999998887655569999998654432111 1100001123457899999873 35555431
Q ss_pred ----CCeEEEEeCCc-------cceeeecccccCCccceEEEEEECCCCCeEEEeEC
Q 024451 206 ----NGDCYVWDTLL-------AKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW 251 (267)
Q Consensus 206 ----dg~i~i~d~~~-------~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~ 251 (267)
...|.-|.+.. .+.+.........|.+ ..|+|.|||++.++-+.
T Consensus 111 ~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~G--grI~FgPDG~LYVs~GD 165 (454)
T TIGR03606 111 ELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNG--GRLVFGPDGKIYYTIGE 165 (454)
T ss_pred CccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCC--ceEEECCCCcEEEEECC
Confidence 22343344321 1111111000123554 45779999987665443
No 413
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=91.05 E-value=2.7 Score=38.03 Aligned_cols=109 Identities=11% Similarity=0.084 Sum_probs=67.2
Q ss_pred CCCEEEEeeCCCcEEEEeCCCCe--------eeEEEEee------cCCCCCCcEEEEEEc--cCCCEEEEEEeCCeEEEE
Q 024451 149 DGNRFGTGSDDGTCRLFDIRTGH--------QLQVYYQQ------HGENEIPHVTSIAFS--ISGRLLFAGYSNGDCYVW 212 (267)
Q Consensus 149 ~~~~l~~~~~d~~i~iwd~~~~~--------~~~~~~~~------~~~~~~~~v~~~~~s--~~~~~l~~g~~dg~i~i~ 212 (267)
....|+.|.+||.|.+|.++.-- ........ ...........++++ ...++||++++...|.+|
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 45678899999999999864210 00000000 000011246778887 778899999888888887
Q ss_pred eCCcc--ceeeecccccCCccceEEEEEECCCC---C---eEEEeECCCcEEEEec
Q 024451 213 DTLLA--KVVLNLGSLQNSHEGRITCLGLSADG---S---ALCTGSWDTNLKIWAF 260 (267)
Q Consensus 213 d~~~~--~~~~~~~~~~~~~~~~v~~~~~~p~~---~---~l~sgs~dg~i~~w~~ 260 (267)
-.... +.... .. ..|...|.+++|-++. . .+++++-.|.+.+|++
T Consensus 193 af~l~~~r~~~~-~s--~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVDERFYHV-PS--HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEeccccccccc-cc--cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 54331 11111 01 1244568889997653 2 7888999999999887
No 414
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=90.00 E-value=1.7 Score=38.44 Aligned_cols=78 Identities=17% Similarity=0.211 Sum_probs=41.6
Q ss_pred CCCCeEEEccCCCeEEEeecCCCCCCCCCCc------------ccccc-------cCCeeeEEEEEEec---CCCeeEEE
Q 024451 7 PTGQSVACGGLDSVCSIFNLNSPTDKDGNLP------------VSRML-------SGHKGYVSCCQYVP---DEDTHLIT 64 (267)
Q Consensus 7 ~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~------------~~~~~-------~~h~~~v~~~~~~~---~~~~~l~s 64 (267)
++...++.+..||.+................ +...+ ..-.+.+......+ .+..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3566788888999988887764110000000 00000 01122333344433 23468999
Q ss_pred eeCCCeEEEEeCCCCeeEEE
Q 024451 65 SSGDQTCVLWDITTGLRTSV 84 (267)
Q Consensus 65 ~~~d~~v~iwd~~~~~~~~~ 84 (267)
-+.|+++|+||+.++..+..
T Consensus 236 l~~D~~LRiW~l~t~~~~~~ 255 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLAT 255 (547)
T ss_dssp EETTSEEEEEETTTTCEEEE
T ss_pred EeCCCeEEEEECCCCeEEEE
Confidence 99999999999999877443
No 415
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.24 E-value=11 Score=32.16 Aligned_cols=155 Identities=13% Similarity=0.178 Sum_probs=87.3
Q ss_pred eCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEE
Q 024451 5 FSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSV 84 (267)
Q Consensus 5 ~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~ 84 (267)
|.-..+.|++.. .|.+.-|-+..++ ..+|..... ..+++|.++.|++++ ..+|.--.|++|.+.+....+....
T Consensus 30 fDDaNkqlfavr-Sggatgvvvkgpn---dDVpiSfdm-~d~G~I~SIkFSlDn-kilAVQR~~~~v~f~nf~~d~~~l~ 103 (657)
T KOG2377|consen 30 FDDANKQLFAVR-SGGATGVVVKGPN---DDVPISFDM-DDKGEIKSIKFSLDN-KILAVQRTSKTVDFCNFIPDNSQLE 103 (657)
T ss_pred eccCcceEEEEe-cCCeeEEEEeCCC---CCCCceeee-cCCCceeEEEeccCc-ceEEEEecCceEEEEecCCCchhhH
Confidence 333344444433 3445666665543 122322222 245699999999976 5788889999999998843222211
Q ss_pred eCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEee--CCCcE
Q 024451 85 FGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGS--DDGTC 162 (267)
Q Consensus 85 ~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~d~~i 162 (267)
+. ......+..|.-..|..+ ..++--... .+-+|.+.......+..+.|...|.-..|.++.+.+.-++ ..+.+
T Consensus 104 ~~-~~ck~k~~~IlGF~W~~s--~e~A~i~~~-G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~l 179 (657)
T KOG2377|consen 104 YT-QECKTKNANILGFCWTSS--TEIAFITDQ-GIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVL 179 (657)
T ss_pred HH-HHhccCcceeEEEEEecC--eeEEEEecC-CeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeecccccccc
Confidence 11 111223445777778754 333333332 3566665444445666677888888889988876543332 44444
Q ss_pred EEEeCCC
Q 024451 163 RLFDIRT 169 (267)
Q Consensus 163 ~iwd~~~ 169 (267)
.=+.+++
T Consensus 180 npf~~~~ 186 (657)
T KOG2377|consen 180 NPFHFRA 186 (657)
T ss_pred ccEEEee
Confidence 4444444
No 416
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=89.04 E-value=1.5 Score=40.34 Aligned_cols=141 Identities=17% Similarity=0.223 Sum_probs=70.8
Q ss_pred CeEEEEeCCCcc-c-----ceEEeeccccceeEEEEec---CCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCC---
Q 024451 117 STARLWDTRVAS-R-----AVRTFHGHEGDVNTVKFFP---DGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENE--- 184 (267)
Q Consensus 117 ~~i~iwd~~~~~-~-----~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~--- 184 (267)
|.+.||++..-. + .+.........+.-+.|.| +..++-.+-.++.+++........ ..+.. |....
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rs-Hs~~~~d~ 230 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRS-HSQRVTDM 230 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHh-cCCCcccH
Confidence 567788764311 1 1222223334456667766 333444444677888766543221 11111 21110
Q ss_pred ----CCcEEEEEEccCCCEEEEEEeCCeEEEEeCCcc-ceeeecccccCCcc-ceEEEEEECCCC---------CeEEEe
Q 024451 185 ----IPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLA-KVVLNLGSLQNSHE-GRITCLGLSADG---------SALCTG 249 (267)
Q Consensus 185 ----~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~-~~~~~~~~~~~~~~-~~v~~~~~~p~~---------~~l~sg 249 (267)
.+.+.--..||||..++..+.||.+.+|..... +........-+.|. .+-.|.-++.+. .+++++
T Consensus 231 a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itt 310 (1283)
T KOG1916|consen 231 AFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITT 310 (1283)
T ss_pred HHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEec
Confidence 011112237999999999999999999875432 22111111123444 344444344332 245555
Q ss_pred EC-CCcEEEEe
Q 024451 250 SW-DTNLKIWA 259 (267)
Q Consensus 250 s~-dg~i~~w~ 259 (267)
+. +..+++|.
T Consensus 311 td~nre~k~w~ 321 (1283)
T KOG1916|consen 311 TDVNREEKFWA 321 (1283)
T ss_pred ccCCcceeEee
Confidence 44 55688886
No 417
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=88.63 E-value=10 Score=29.83 Aligned_cols=101 Identities=19% Similarity=0.195 Sum_probs=59.1
Q ss_pred ceeEEEEecCCCEEEEee---CCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEe-CC
Q 024451 140 DVNTVKFFPDGNRFGTGS---DDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD-TL 215 (267)
Q Consensus 140 ~i~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d-~~ 215 (267)
.+.+.+.+++++.++... ....+.++... ........ ...+..-+|++++...++...+....++. ..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~------g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~ 96 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLT------GGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSA 96 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeecc------CCccccccccCCCCEEEEEcCCCceEEEEecC
Confidence 578899999998776655 23345555433 32222211 12456778999988777776666666663 22
Q ss_pred cccee-eecccccCCccceEEEEEECCCCCeEEEeE
Q 024451 216 LAKVV-LNLGSLQNSHEGRITCLGLSADGSALCTGS 250 (267)
Q Consensus 216 ~~~~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs 250 (267)
.++.. .... .. .-.+.|..+.+||||.-+|.-.
T Consensus 97 ~g~~~~~~v~-~~-~~~~~I~~l~vSpDG~RvA~v~ 130 (253)
T PF10647_consen 97 SGTGEPVEVD-WP-GLRGRITALRVSPDGTRVAVVV 130 (253)
T ss_pred CCcceeEEec-cc-ccCCceEEEEECCCCcEEEEEE
Confidence 22211 1111 11 1112899999999999777654
No 418
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.34 E-value=12 Score=30.07 Aligned_cols=208 Identities=13% Similarity=0.088 Sum_probs=110.5
Q ss_pred EEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcc
Q 024451 49 VSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS 128 (267)
Q Consensus 49 v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~ 128 (267)
++-++|.+.+..+...+..+ .-+|..+-.. . +.+.-..+-...+.++.|+|...-+|++....-.|-=-+. ..
T Consensus 45 ~f~~a~~k~~~~~~~~~~r~--~~~~l~~y~~--~-i~akpi~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~--~G 117 (316)
T COG3204 45 VFPCAWFKAGQTNGLDLSRY--IARYLLEYRA--R-IDAKPILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTK--EG 117 (316)
T ss_pred eeeeEEEeccccccccccch--hhhccCCceE--E-EeccccccccccccceeeCCCcceEEEecCCCceEEEEec--CC
Confidence 34455555444333333333 4455543221 1 1122123445558899999866555555444434332232 33
Q ss_pred cceEEeecc-ccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEe-----ecCCCCCCcEEEEEEccCCCEEEE
Q 024451 129 RAVRTFHGH-EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQ-----QHGENEIPHVTSIAFSISGRLLFA 202 (267)
Q Consensus 129 ~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-----~~~~~~~~~v~~~~~s~~~~~l~~ 202 (267)
..++.+.-. -.....+++..+++++++-=.++.+-++.+........... ............++|+|.+..+..
T Consensus 118 dlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~ 197 (316)
T COG3204 118 DLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFV 197 (316)
T ss_pred ceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEE
Confidence 445443211 23346678887777777666788888887765432211111 011111234678999999999998
Q ss_pred EEeCCeEEEEeCCccceeeec--ccccC----CccceEEEEEECCC-CCeEEEeECCCcEEEEecCce
Q 024451 203 GYSNGDCYVWDTLLAKVVLNL--GSLQN----SHEGRITCLGLSAD-GSALCTGSWDTNLKIWAFGGY 263 (267)
Q Consensus 203 g~~dg~i~i~d~~~~~~~~~~--~~~~~----~~~~~v~~~~~~p~-~~~l~sgs~dg~i~~w~~~~~ 263 (267)
.-+..-+.||........... ...+. -.-..|.++.|++. +.+|+.+..++.+.-.+..|-
T Consensus 198 aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 198 AKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred EEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence 888887888765433211111 00000 11235788888864 555666666766666665443
No 419
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=88.25 E-value=3.6 Score=36.46 Aligned_cols=34 Identities=26% Similarity=0.297 Sum_probs=26.3
Q ss_pred eeEEEEec----CCCEEEEeeCCCcEEEEeCCCCeeeE
Q 024451 141 VNTVKFFP----DGNRFGTGSDDGTCRLFDIRTGHQLQ 174 (267)
Q Consensus 141 i~~~~~~~----~~~~l~~~~~d~~i~iwd~~~~~~~~ 174 (267)
+..+..++ +..++++.+.|+++|+||+.+++++.
T Consensus 217 ~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~ 254 (547)
T PF11715_consen 217 AASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLA 254 (547)
T ss_dssp EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEE
T ss_pred cceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEE
Confidence 44555555 66889999999999999999988744
No 420
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=88.17 E-value=9.8 Score=28.99 Aligned_cols=57 Identities=9% Similarity=0.158 Sum_probs=36.3
Q ss_pred CEEEEeeCCCcEEEEeCCCCeee-EEEEeecCCCCCCcEEEEEEccCCCEEEEEEeC---C---eEEEE
Q 024451 151 NRFGTGSDDGTCRLFDIRTGHQL-QVYYQQHGENEIPHVTSIAFSISGRLLFAGYSN---G---DCYVW 212 (267)
Q Consensus 151 ~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d---g---~i~i~ 212 (267)
+.+..+.....|.+|++...... ..-+. ..+.|..+.++..|+++++=-.+ . .+++|
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-----Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y 92 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS-----TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAY 92 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc-----chhheeEEEeccccceEEEEEeecCCccceEEEEE
Confidence 44444466678999999833222 21111 12468899999999999995432 2 66775
No 421
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.95 E-value=7.3 Score=33.81 Aligned_cols=80 Identities=20% Similarity=0.325 Sum_probs=49.3
Q ss_pred eeeCCCCCeEEEccCCCeEEEee---cCCCC-CCCCC--Ccc-----c-ccc-cCCeeeEEEEEEecCC--CeeEEEeeC
Q 024451 3 CAFSPTGQSVACGGLDSVCSIFN---LNSPT-DKDGN--LPV-----S-RML-SGHKGYVSCCQYVPDE--DTHLITSSG 67 (267)
Q Consensus 3 ~~~~~~g~~l~~~~~d~~v~~w~---~~~~~-~~~~~--~~~-----~-~~~-~~h~~~v~~~~~~~~~--~~~l~s~~~ 67 (267)
+..++.|..++-+|.+|.+.++= ..... ..++. ..+ . +.+ ....-.+.-++|+|+. +..|..-+.
T Consensus 109 vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~iL~s 188 (741)
T KOG4460|consen 109 VLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLVLLTS 188 (741)
T ss_pred EEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEEEEec
Confidence 34689999999999999887763 11111 11111 111 0 011 1111234557899986 678888899
Q ss_pred CCeEEEEeCCCCeeE
Q 024451 68 DQTCVLWDITTGLRT 82 (267)
Q Consensus 68 d~~v~iwd~~~~~~~ 82 (267)
|+++|+||+......
T Consensus 189 dnviRiy~lS~~tel 203 (741)
T KOG4460|consen 189 DNVIRIYSLSEPTEL 203 (741)
T ss_pred CcEEEEEecCCcchh
Confidence 999999999765433
No 422
>PHA03098 kelch-like protein; Provisional
Probab=87.86 E-value=19 Score=31.87 Aligned_cols=103 Identities=17% Similarity=0.144 Sum_probs=48.7
Q ss_pred eeEEEeeCCC------eEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCC-----eEEEEeCCCcc
Q 024451 60 THLITSSGDQ------TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS-----TARLWDTRVAS 128 (267)
Q Consensus 60 ~~l~s~~~d~------~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~-----~i~iwd~~~~~ 128 (267)
..++.|+.++ .+..||..+..-...- ..... .. -.++... ++++++.||.++ .+..||....
T Consensus 296 ~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~--~~~~~-R~-~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~- 368 (534)
T PHA03098 296 VIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVP--ELIYP-RK-NPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGES- 368 (534)
T ss_pred EEEEECCCcCCCCeeccEEEEeCCCCeeeECC--CCCcc-cc-cceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCC-
Confidence 4566666542 4677887765432211 11001 11 1122222 457788887652 4566776532
Q ss_pred cceEEeecc--ccceeEEEEecCCCEEEEeeCC------CcEEEEeCCCCe
Q 024451 129 RAVRTFHGH--EGDVNTVKFFPDGNRFGTGSDD------GTCRLFDIRTGH 171 (267)
Q Consensus 129 ~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~ 171 (267)
........ ...-.+++ .-+++..+.||.+ ..+..||+.+.+
T Consensus 369 -~W~~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~ 417 (534)
T PHA03098 369 -KWREEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNK 417 (534)
T ss_pred -ceeeCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCe
Confidence 22222111 11111222 2356667777732 357888887654
No 423
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=87.18 E-value=12 Score=29.00 Aligned_cols=105 Identities=18% Similarity=0.205 Sum_probs=66.5
Q ss_pred cceeEEEEecCCCEEE-EeeCCCcEEEEe--CCCCee-----eEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEE
Q 024451 139 GDVNTVKFFPDGNRFG-TGSDDGTCRLFD--IRTGHQ-----LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCY 210 (267)
Q Consensus 139 ~~i~~~~~~~~~~~l~-~~~~d~~i~iwd--~~~~~~-----~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~ 210 (267)
+.-+.++|+.+.+.|. +-+.+-+|.-|| ..++.. +-.+.... ..+....-.++.+..|...++..+.|.|.
T Consensus 158 ~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~-~~e~~~PDGm~ID~eG~L~Va~~ng~~V~ 236 (310)
T KOG4499|consen 158 GISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQ-PFESLEPDGMTIDTEGNLYVATFNGGTVQ 236 (310)
T ss_pred cCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCC-CcCCCCCCcceEccCCcEEEEEecCcEEE
Confidence 3346788887776654 456677887788 555432 11111111 11111223455577889999999999999
Q ss_pred EEeCCccceeeecccccCCccceEEEEEEC-CCCCeEEE
Q 024451 211 VWDTLLAKVVLNLGSLQNSHEGRITCLGLS-ADGSALCT 248 (267)
Q Consensus 211 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~l~s 248 (267)
..|..+++.+..+.. -...|+|++|- |+-..|.+
T Consensus 237 ~~dp~tGK~L~eikl----Pt~qitsccFgGkn~d~~yv 271 (310)
T KOG4499|consen 237 KVDPTTGKILLEIKL----PTPQITSCCFGGKNLDILYV 271 (310)
T ss_pred EECCCCCcEEEEEEc----CCCceEEEEecCCCccEEEE
Confidence 999999998876632 24578999996 55445443
No 424
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=87.02 E-value=18 Score=30.73 Aligned_cols=223 Identities=17% Similarity=0.153 Sum_probs=104.5
Q ss_pred eeeCCCCCeEEEc-----cCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeC----------
Q 024451 3 CAFSPTGQSVACG-----GLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSG---------- 67 (267)
Q Consensus 3 ~~~~~~g~~l~~~-----~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~---------- 67 (267)
.+++|+|++++-+ +...++++.|+.... .+...+.. ..-..+.|.+++..++.+.-.
T Consensus 129 ~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~------~l~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~ 200 (414)
T PF02897_consen 129 FSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGK------FLPDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGY 200 (414)
T ss_dssp EEETTTSSEEEEEEEETTSSEEEEEEEETTTTE------EEEEEEEE--EESEEEEECTTSSEEEEEECSTTTSS-CCGC
T ss_pred eeECCCCCEEEEEecCCCCceEEEEEEECCCCc------CcCCcccc--cccceEEEeCCCCEEEEEEeCcccccccCCC
Confidence 4689999988753 334568999987531 11111111 111238899987665555432
Q ss_pred CCeEEEEeCCCCeeE--EEeCCccccCCccc-eEEEEEeCCCCeEEEEecCC---CeEEEEeCCCc---ccceEEeeccc
Q 024451 68 DQTCVLWDITTGLRT--SVFGGEFQSGHTAD-VLSVSISGSNSRMFVSGSCD---STARLWDTRVA---SRAVRTFHGHE 138 (267)
Q Consensus 68 d~~v~iwd~~~~~~~--~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~s~~~d---~~i~iwd~~~~---~~~~~~~~~~~ 138 (267)
...|+.|++.+.... .++... .... ...+..+.....+++..... ..+.+.+.... ......+..+.
T Consensus 201 ~~~v~~~~~gt~~~~d~lvfe~~----~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~ 276 (414)
T PF02897_consen 201 PRQVYRHKLGTPQSEDELVFEEP----DEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRE 276 (414)
T ss_dssp CEEEEEEETTS-GGG-EEEEC-T----TCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESS
T ss_pred CcEEEEEECCCChHhCeeEEeec----CCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCC
Confidence 234788888776432 344321 2222 45666776544444444333 34777777642 22344444444
Q ss_pred cceeEEEEecCCCEEEEe---eCCCcEEEEeCCCCee---eEEEEeecCCCCCCcEEEEEEccCCCEEEEEE-eCC--eE
Q 024451 139 GDVNTVKFFPDGNRFGTG---SDDGTCRLFDIRTGHQ---LQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNG--DC 209 (267)
Q Consensus 139 ~~i~~~~~~~~~~~l~~~---~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~-~dg--~i 209 (267)
..+....-+..+.+++.. ...+.|.-.++..... ...+.. +.. ...+..+ ...+.+|+... .++ .|
T Consensus 277 ~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~-~~~--~~~l~~~--~~~~~~Lvl~~~~~~~~~l 351 (414)
T PF02897_consen 277 DGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIP-EDE--DVSLEDV--SLFKDYLVLSYRENGSSRL 351 (414)
T ss_dssp SS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE---SS--SEEEEEE--EEETTEEEEEEEETTEEEE
T ss_pred CceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcC-CCC--ceeEEEE--EEECCEEEEEEEECCccEE
Confidence 444333333333333322 2345666677766542 112222 111 1123333 44455565554 444 78
Q ss_pred EEEeCCccceeeecccccCCccceEEEEEECCCCCe
Q 024451 210 YVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSA 245 (267)
Q Consensus 210 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 245 (267)
++++........... ..-.+.|..+...++++.
T Consensus 352 ~v~~~~~~~~~~~~~---~p~~g~v~~~~~~~~~~~ 384 (414)
T PF02897_consen 352 RVYDLDDGKESREIP---LPEAGSVSGVSGDFDSDE 384 (414)
T ss_dssp EEEETT-TEEEEEEE---SSSSSEEEEEES-TT-SE
T ss_pred EEEECCCCcEEeeec---CCcceEEeccCCCCCCCE
Confidence 888877222222221 112344556655555543
No 425
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=86.92 E-value=28 Score=32.86 Aligned_cols=241 Identities=14% Similarity=0.122 Sum_probs=109.3
Q ss_pred eeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEE
Q 024451 4 AFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTS 83 (267)
Q Consensus 4 ~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~ 83 (267)
+|--|..+|.++..||.+.-|.+...+.+ ..-.+...--+.++.--.|...+.+.++++ .|+...+|-.+.. ...
T Consensus 590 ~~e~d~~yLlvalgdG~l~~fv~d~~tg~---lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~-sdrP~viY~~n~k-Lv~ 664 (1096)
T KOG1897|consen 590 TFEGDIHYLLVALGDGALLYFVLDINTGQ---LSDRKKVTLGTQPISLRTFSSKSRTAVFAL-SDRPTVIYSSNGK-LVY 664 (1096)
T ss_pred EeeccceEEEEEcCCceEEEEEEEcccce---EccccccccCCCCcEEEEEeeCCceEEEEe-CCCCEEEEecCCc-EEE
Confidence 34456789999999999998877653221 111111111234444445555455555544 4555555544321 111
Q ss_pred EeCCccccCCccceEEEE-EeCC-CCeEEEEecCCCeEEEEeCCCc-ccceEEeeccccceeEEEEecCCCEEEEeeC--
Q 024451 84 VFGGEFQSGHTADVLSVS-ISGS-NSRMFVSGSCDSTARLWDTRVA-SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSD-- 158 (267)
Q Consensus 84 ~~~~~~~~~~~~~i~~~~-~~~~-~~~~~~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-- 158 (267)
-+. .-..+..++ ++.+ ...-+++ ...+.+++..+..- +..++...- ......+++.+....+.+.+.
T Consensus 665 -spl-----s~kev~~~c~f~s~a~~d~l~~-~~~~~l~i~tid~iqkl~irtvpl-~~~prrI~~q~~sl~~~v~s~r~ 736 (1096)
T KOG1897|consen 665 -SPL-----SLKEVNHMCPFNSDAYPDSLAS-ANGGALTIGTIDEIQKLHIRTVPL-GESPRRICYQESSLTFGVLSNRI 736 (1096)
T ss_pred -ecc-----chHHhhhhcccccccCCceEEE-ecCCceEEEEecchhhcceeeecC-CCChhheEecccceEEEEEeccc
Confidence 000 000111111 1111 1122333 33445666654321 112333222 233455666653333333321
Q ss_pred ---------C---CcEEEEeCCCCeeeEEEEeecCCCC-CCcEEEEEEccC-CCEEEEEEe----------CCeEEEEeC
Q 024451 159 ---------D---GTCRLFDIRTGHQLQVYYQQHGENE-IPHVTSIAFSIS-GRLLFAGYS----------NGDCYVWDT 214 (267)
Q Consensus 159 ---------d---~~i~iwd~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~-~~~l~~g~~----------dg~i~i~d~ 214 (267)
. ..++++|-.+-+.+.... ....+ ...+.++.|..+ +.++++|.. .|.|.+|..
T Consensus 737 e~~~~~~~ee~~~s~l~vlD~nTf~vl~~he--f~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~ 814 (1096)
T KOG1897|consen 737 ESSAEYYGEEYEVSFLRVLDQNTFEVLSSHE--FERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEF 814 (1096)
T ss_pred ccchhhcCCcceEEEEEEecCCceeEEeecc--ccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEE
Confidence 1 136666665543332111 11111 123445558766 778888864 466666655
Q ss_pred CccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCceE
Q 024451 215 LLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGYR 264 (267)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~~ 264 (267)
.....+..... ..-.+.+.++.. .+|++||. -+..|++|+...-+
T Consensus 815 ~e~~~L~~v~e--~~v~Gav~aL~~-fngkllA~--In~~vrLye~t~~~ 859 (1096)
T KOG1897|consen 815 EELNSLELVAE--TVVKGAVYALVE-FNGKLLAG--INQSVRLYEWTTER 859 (1096)
T ss_pred ecCCceeeeee--eeeccceeehhh-hCCeEEEe--cCcEEEEEEccccc
Confidence 44222211111 112344444432 46888774 56789999876543
No 426
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=86.63 E-value=12 Score=28.45 Aligned_cols=181 Identities=14% Similarity=0.094 Sum_probs=77.7
Q ss_pred CeeEEEeeCC--CeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeec
Q 024451 59 DTHLITSSGD--QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHG 136 (267)
Q Consensus 59 ~~~l~s~~~d--~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~ 136 (267)
+.++.+.+.- ..|+.||+.+++..............+-+.. ..+.+..-.-.+|....+|.+.-. .+..+.
T Consensus 56 g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~-----~gd~~y~LTw~egvaf~~d~~t~~-~lg~~~- 128 (262)
T COG3823 56 GHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITK-----LGDYFYQLTWKEGVAFKYDADTLE-ELGRFS- 128 (262)
T ss_pred CEEEEeccccccceeEEEeccCceEEEEeecCCccccccceee-----ccceEEEEEeccceeEEEChHHhh-hhcccc-
Confidence 3455565543 4699999998765443221100000011111 122333444556666677654321 122111
Q ss_pred cccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCc
Q 024451 137 HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL 216 (267)
Q Consensus 137 ~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~ 216 (267)
.++.=..+. .+++.++.+....++..-|.++-.......-.........+.-+.| .+|...|=-..+-.|...|..+
T Consensus 129 y~GeGWgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~-VdG~lyANVw~t~~I~rI~p~s 205 (262)
T COG3823 129 YEGEGWGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW-VDGELYANVWQTTRIARIDPDS 205 (262)
T ss_pred cCCcceeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceee-eccEEEEeeeeecceEEEcCCC
Confidence 122234444 3444455544445666666654322211111100000011222222 1333333333333333334444
Q ss_pred cceeee--------cccccCCccceEEEEEECCCC-CeEEEe
Q 024451 217 AKVVLN--------LGSLQNSHEGRITCLGLSADG-SALCTG 249 (267)
Q Consensus 217 ~~~~~~--------~~~~~~~~~~~v~~~~~~p~~-~~l~sg 249 (267)
++.... .......+....+.+++.|++ +++++|
T Consensus 206 GrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 206 GRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred CcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 433211 112234466678899999987 677776
No 427
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=86.57 E-value=9.5 Score=28.03 Aligned_cols=30 Identities=13% Similarity=0.202 Sum_probs=24.7
Q ss_pred ceEEEEEECCCC------CeEEEeECCCcEEEEecC
Q 024451 232 GRITCLGLSADG------SALCTGSWDTNLKIWAFG 261 (267)
Q Consensus 232 ~~v~~~~~~p~~------~~l~sgs~dg~i~~w~~~ 261 (267)
..+..++|||-| -+||+.+.++.+.||.-.
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 478999999954 378889999999999644
No 428
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=86.19 E-value=14 Score=28.70 Aligned_cols=100 Identities=16% Similarity=0.234 Sum_probs=61.2
Q ss_pred EEEEeCCCCeEEEEecCCCeEEEEeCCCcc------cceEEee---ccccc-eeEEEEecCCCEEEEeeCCCcEEEEeCC
Q 024451 99 SVSISGSNSRMFVSGSCDSTARLWDTRVAS------RAVRTFH---GHEGD-VNTVKFFPDGNRFGTGSDDGTCRLFDIR 168 (267)
Q Consensus 99 ~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~------~~~~~~~---~~~~~-i~~~~~~~~~~~l~~~~~d~~i~iwd~~ 168 (267)
.+.|+.....+..+-+.+-.|.-||..... +.+..++ ..... -..++...+|++.+++-..++|...|+.
T Consensus 162 gl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~ 241 (310)
T KOG4499|consen 162 GLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPT 241 (310)
T ss_pred cccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCC
Confidence 455665555666777778788888733211 1111111 11111 1234445678899999999999999999
Q ss_pred CCeeeEEEEeecCCCCCCcEEEEEEcc-CCCEEEEE
Q 024451 169 TGHQLQVYYQQHGENEIPHVTSIAFSI-SGRLLFAG 203 (267)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~g 203 (267)
+++.+..+.-. ...++++||-- +-..+.+.
T Consensus 242 tGK~L~eiklP-----t~qitsccFgGkn~d~~yvT 272 (310)
T KOG4499|consen 242 TGKILLEIKLP-----TPQITSCCFGGKNLDILYVT 272 (310)
T ss_pred CCcEEEEEEcC-----CCceEEEEecCCCccEEEEE
Confidence 99988766432 34689999963 33344433
No 429
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=85.92 E-value=21 Score=30.49 Aligned_cols=146 Identities=12% Similarity=0.144 Sum_probs=80.0
Q ss_pred CCeEEEEecCCCeEEEEeCCCcccce-EEe--eccccceeEEEEec-----CCCEEEEeeCCCcEEEEeCCCC-------
Q 024451 106 NSRMFVSGSCDSTARLWDTRVASRAV-RTF--HGHEGDVNTVKFFP-----DGNRFGTGSDDGTCRLFDIRTG------- 170 (267)
Q Consensus 106 ~~~~~~s~~~d~~i~iwd~~~~~~~~-~~~--~~~~~~i~~~~~~~-----~~~~l~~~~~d~~i~iwd~~~~------- 170 (267)
+...++.|+..|.++|++........ ..+ ..-+.+|-.++.-+ ....||. =.-+++.+|.+...
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccC
Confidence 34578899999999999875432111 111 11245666665432 1223333 23356666766211
Q ss_pred --eeeEEEEeecCCCCCCcEEEEE---Ec-cC-CCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCC
Q 024451 171 --HQLQVYYQQHGENEIPHVTSIA---FS-IS-GRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADG 243 (267)
Q Consensus 171 --~~~~~~~~~~~~~~~~~v~~~~---~s-~~-~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 243 (267)
-.+...++++... ....++ |- .. ..++.+-+.||.+.+|+.........+.. ....+| +++.|.-
T Consensus 115 ~~~~L~~~yeh~l~~---~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~--~llPgP---l~Y~~~t 186 (418)
T PF14727_consen 115 NQYQLELIYEHSLQR---TAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD--FLLPGP---LCYCPRT 186 (418)
T ss_pred cEEEEEEEEEEeccc---ceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC--CCCCcC---eEEeecC
Confidence 1222333332211 112222 22 12 35788889999999999665432222211 223343 4577777
Q ss_pred CeEEEeECCCcEEEEec
Q 024451 244 SALCTGSWDTNLKIWAF 260 (267)
Q Consensus 244 ~~l~sgs~dg~i~~w~~ 260 (267)
..|++++.+..+.-|++
T Consensus 187 Dsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 187 DSFVTASSSWTLECYKY 203 (418)
T ss_pred CEEEEecCceeEEEecH
Confidence 88888888888888876
No 430
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=85.75 E-value=20 Score=30.03 Aligned_cols=104 Identities=13% Similarity=0.133 Sum_probs=52.3
Q ss_pred cceeEEEEecCCCEEEEeeCCCcEEEEeCCCCe----eeEEEEeecCCC---CCCcEEEEEEccCCCEEEEEEeC-----
Q 024451 139 GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH----QLQVYYQQHGEN---EIPHVTSIAFSISGRLLFAGYSN----- 206 (267)
Q Consensus 139 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~----~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~g~~d----- 206 (267)
.....+++.+++ ++++ ....-.++.|..... ....+....... .......++|.|+|.+.++-+..
T Consensus 72 ~~p~Gi~~~~~G-lyV~-~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~ 149 (367)
T TIGR02604 72 SMVTGLAVAVGG-VYVA-TPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKV 149 (367)
T ss_pred CCccceeEecCC-EEEe-CCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCcee
Confidence 345778888888 5554 444433444543210 112222211111 11235688999998866653311
Q ss_pred --------------CeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEe
Q 024451 207 --------------GDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTG 249 (267)
Q Consensus 207 --------------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sg 249 (267)
|.+.-+|....+... + ... ......++|+|+|+++++-
T Consensus 150 ~~~~~~~~~~~~~~g~i~r~~pdg~~~e~-~---a~G-~rnp~Gl~~d~~G~l~~td 201 (367)
T TIGR02604 150 TRPGTSDESRQGLGGGLFRYNPDGGKLRV-V---AHG-FQNPYGHSVDSWGDVFFCD 201 (367)
T ss_pred ccCCCccCcccccCceEEEEecCCCeEEE-E---ecC-cCCCccceECCCCCEEEEc
Confidence 344445543322211 1 111 2234679999999988763
No 431
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=85.23 E-value=17 Score=28.79 Aligned_cols=191 Identities=13% Similarity=0.162 Sum_probs=102.4
Q ss_pred eeEEEEEEecCCCeeEEEeeCCC--eEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeC
Q 024451 47 GYVSCCQYVPDEDTHLITSSGDQ--TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDT 124 (267)
Q Consensus 47 ~~v~~~~~~~~~~~~l~s~~~d~--~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~ 124 (267)
.....+.|..++ .++-|.+.-| .|+.+|+.+++........ ..-.-.-++.. +++++.-.-.++...+||.
T Consensus 45 aFTQGL~~~~~g-~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~----~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~ 117 (264)
T PF05096_consen 45 AFTQGLEFLDDG-TLYESTGLYGQSSLRKVDLETGKVLQSVPLP----PRYFGEGITIL--GDKLYQLTWKEGTGFVYDP 117 (264)
T ss_dssp -EEEEEEEEETT-EEEEEECSTTEEEEEEEETTTSSEEEEEE-T----TT--EEEEEEE--TTEEEEEESSSSEEEEEET
T ss_pred ccCccEEecCCC-EEEEeCCCCCcEEEEEEECCCCcEEEEEECC----ccccceeEEEE--CCEEEEEEecCCeEEEEcc
Confidence 444556675543 5666766655 6999999998654433211 11112233343 4566666778889999998
Q ss_pred CCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEE
Q 024451 125 RVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY 204 (267)
Q Consensus 125 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~ 204 (267)
.. -+.+..+. ..+.=..++ .+++.|+.......+.++|..+-+....+.-.........+.-+.+- +|...|=-.
T Consensus 118 ~t-l~~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW 192 (264)
T PF05096_consen 118 NT-LKKIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVW 192 (264)
T ss_dssp TT-TEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEET
T ss_pred cc-ceEEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeC
Confidence 64 33444443 233445555 45666665555668999998776554443322222222345566664 565555556
Q ss_pred eCCeEEEEeCCccceeeecc--cc---------cCCccceEEEEEECCCCC-eEEEe
Q 024451 205 SNGDCYVWDTLLAKVVLNLG--SL---------QNSHEGRITCLGLSADGS-ALCTG 249 (267)
Q Consensus 205 ~dg~i~i~d~~~~~~~~~~~--~~---------~~~~~~~v~~~~~~p~~~-~l~sg 249 (267)
....|...|..+++....+. .+ ........+.+|+.|..+ +++||
T Consensus 193 ~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 193 QTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp TSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred CCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 66777777877776543221 00 011246789999988655 45554
No 432
>PHA02790 Kelch-like protein; Provisional
Probab=84.96 E-value=26 Score=30.64 Aligned_cols=100 Identities=8% Similarity=0.008 Sum_probs=47.7
Q ss_pred CeeEEEeeCC--CeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCC---eEEEEeCCCcccceEE
Q 024451 59 DTHLITSSGD--QTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS---TARLWDTRVASRAVRT 133 (267)
Q Consensus 59 ~~~l~s~~~d--~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~---~i~iwd~~~~~~~~~~ 133 (267)
+...+.||.+ .++..||..+..-...-+ .. ....-.++... ++++++.||.++ .+..||.+... ...
T Consensus 319 ~~iYviGG~~~~~sve~ydp~~n~W~~~~~--l~--~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~--W~~ 390 (480)
T PHA02790 319 NKLYVVGGLPNPTSVERWFHGDAAWVNMPS--LL--KPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQ--WQF 390 (480)
T ss_pred CEEEEECCcCCCCceEEEECCCCeEEECCC--CC--CCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCE--EEe
Confidence 3455666653 457788876543222111 11 11111122222 467888888654 35677765321 221
Q ss_pred eec---cccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCe
Q 024451 134 FHG---HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH 171 (267)
Q Consensus 134 ~~~---~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 171 (267)
... .... .+++ .-+++..+.|+ .+.+||.++.+
T Consensus 391 ~~~m~~~r~~-~~~~-~~~~~IYv~GG---~~e~ydp~~~~ 426 (480)
T PHA02790 391 GPSTYYPHYK-SCAL-VFGRRLFLVGR---NAEFYCESSNT 426 (480)
T ss_pred CCCCCCcccc-ceEE-EECCEEEEECC---ceEEecCCCCc
Confidence 111 1111 1222 23556666664 57789887654
No 433
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=84.70 E-value=28 Score=30.90 Aligned_cols=117 Identities=10% Similarity=0.146 Sum_probs=67.3
Q ss_pred cceEEEEEeCCC---CeEEEEecCCCeEEEEeCCCc----ccceEEeec-ccc--ce--eEEEEecCCCEEEEeeCCCcE
Q 024451 95 ADVLSVSISGSN---SRMFVSGSCDSTARLWDTRVA----SRAVRTFHG-HEG--DV--NTVKFFPDGNRFGTGSDDGTC 162 (267)
Q Consensus 95 ~~i~~~~~~~~~---~~~~~s~~~d~~i~iwd~~~~----~~~~~~~~~-~~~--~i--~~~~~~~~~~~l~~~~~d~~i 162 (267)
+.|..+.|.|.. ..-+++..-.+.|.||.+... .+....... ... ++ ..+.|||....++.-.....-
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS 136 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS 136 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence 346777787642 223455666778999987521 111111111 111 11 357899988888776655444
Q ss_pred EEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEE-eCCeEEEEeCC
Q 024451 163 RLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY-SNGDCYVWDTL 215 (267)
Q Consensus 163 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~-~dg~i~i~d~~ 215 (267)
.+++++........ .....+.|.+.||.+||+.|+++- +.=+-++||-.
T Consensus 137 V~~sV~~d~srVka----Di~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 137 VLPSVHCDSSRVKA----DIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred EeeeeeeCCceEEE----eccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 45555433221111 122345799999999999876654 34577899843
No 434
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=84.46 E-value=23 Score=29.65 Aligned_cols=52 Identities=13% Similarity=0.056 Sum_probs=26.8
Q ss_pred CCEEEEEEeCCeEEEEeCCccc-eee-ecccccCCcc--ceEEEEEECCCCCeEEE
Q 024451 197 GRLLFAGYSNGDCYVWDTLLAK-VVL-NLGSLQNSHE--GRITCLGLSADGSALCT 248 (267)
Q Consensus 197 ~~~l~~g~~dg~i~i~d~~~~~-~~~-~~~~~~~~~~--~~v~~~~~~p~~~~l~s 248 (267)
+.++++....+.|..+.+.... ... ....+..... .+...+.+.|||.+.++
T Consensus 282 g~~fv~~~~~~~v~~~~l~~~g~~~~~~~~~~l~~~~~~~rp~dv~~~pDG~Lyv~ 337 (367)
T TIGR02604 282 GLLLVGDAHGQLIVRYSLEPKGAGFKGERPEFLRSNDTWFRPVNVTVGPDGALYVS 337 (367)
T ss_pred CCEEeeeccCCEEEEEEeecCCCccEeecCceEecCCCcccccceeECCCCCEEEE
Confidence 5566666666666666553211 010 1011111111 35677999999987765
No 435
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=84.42 E-value=0.16 Score=42.98 Aligned_cols=138 Identities=12% Similarity=0.225 Sum_probs=87.2
Q ss_pred EeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEE-eeCCCcEEEEeCCCCeeeEEEEeec
Q 024451 102 ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGT-GSDDGTCRLFDIRTGHQLQVYYQQH 180 (267)
Q Consensus 102 ~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~ 180 (267)
|-+.+.. ++.++.+-.+..||-. ....... ...+....++|..++..++. +-..+.+-+||+.+...-+.-
T Consensus 42 w~~e~~n-lavaca~tiv~~YD~a--gq~~le~-n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE---- 113 (615)
T KOG2247|consen 42 WRPEGHN-LAVACANTIVIYYDKA--GQVILEL-NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLE---- 113 (615)
T ss_pred EecCCCc-eehhhhhhHHHhhhhh--cceeccc-CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHh----
Confidence 4433333 6677778888888853 2222222 23445667788777766544 456789999999764321110
Q ss_pred CCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCC
Q 024451 181 GENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDT 253 (267)
Q Consensus 181 ~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg 253 (267)
.+....-.-+.|++....++.|...|.+.+|+..+.+....+ ..|..+++++++.+.+. .+.++.|.
T Consensus 114 -~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~----Gkh~RRgtq~av~lEd~-vil~dcd~ 180 (615)
T KOG2247|consen 114 -SGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVM----GKHQRRGTQIAVTLEDY-VILCDCDN 180 (615)
T ss_pred -ccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhh----cccccceeEEEecccce-eeecCcHH
Confidence 011111122568888899999999999999998776655433 34888999999998764 44455544
No 436
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=84.22 E-value=29 Score=30.72 Aligned_cols=195 Identities=15% Similarity=0.163 Sum_probs=100.2
Q ss_pred eEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccc-----e-EEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEe
Q 024451 61 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTAD-----V-LSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTF 134 (267)
Q Consensus 61 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~-----i-~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~ 134 (267)
.++.++.++.|.-.|..+++.+..+........... + ..+.+. ++ .++.++.|+.+.-.|.++.+...+.-
T Consensus 71 ~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~~-~v~v~t~dg~l~ALDa~TGk~~W~~~ 147 (527)
T TIGR03075 71 VMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--DG-KVFFGTLDARLVALDAKTGKVVWSKK 147 (527)
T ss_pred EEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE--CC-EEEEEcCCCEEEEEECCCCCEEeecc
Confidence 567777788899999999877665532211000000 0 012222 23 34567778888888877554332211
Q ss_pred eccccceeEEEEec--CCCEEEEee------CCCcEEEEeCCCCeeeEEEEeecCCC-----------------------
Q 024451 135 HGHEGDVNTVKFFP--DGNRFGTGS------DDGTCRLFDIRTGHQLQVYYQQHGEN----------------------- 183 (267)
Q Consensus 135 ~~~~~~i~~~~~~~--~~~~l~~~~------~d~~i~iwd~~~~~~~~~~~~~~~~~----------------------- 183 (267)
......-..+.-.| .+..++.+. .++.|.-+|.++++.+-.+.......
T Consensus 148 ~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~ 227 (527)
T TIGR03075 148 NGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDA 227 (527)
T ss_pred cccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCc
Confidence 11100001111112 123444443 26889999999998765432211100
Q ss_pred ---CCCcE-EEEEEccCCCEEEEEEeC-----C-----------eEEEEeCCccceeeecccccCCcc-------ceEEE
Q 024451 184 ---EIPHV-TSIAFSISGRLLFAGYSN-----G-----------DCYVWDTLLAKVVLNLGSLQNSHE-------GRITC 236 (267)
Q Consensus 184 ---~~~~v-~~~~~s~~~~~l~~g~~d-----g-----------~i~i~d~~~~~~~~~~~~~~~~~~-------~~v~~ 236 (267)
....+ ...++++....+..+..+ + .|.-.|+++++....+... .|. ..-.-
T Consensus 228 ~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~--~~D~wD~d~~~~p~l 305 (527)
T TIGR03075 228 WKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTT--PHDEWDYDGVNEMIL 305 (527)
T ss_pred cccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCC--CCCCccccCCCCcEE
Confidence 00111 234667777777666533 2 4555677777765443221 121 11112
Q ss_pred EEECCCCC---eEEEeECCCcEEEEec
Q 024451 237 LGLSADGS---ALCTGSWDTNLKIWAF 260 (267)
Q Consensus 237 ~~~~p~~~---~l~sgs~dg~i~~w~~ 260 (267)
+.+..+|+ .++.+.++|.+.+.|-
T Consensus 306 ~d~~~~G~~~~~v~~~~K~G~~~vlDr 332 (527)
T TIGR03075 306 FDLKKDGKPRKLLAHADRNGFFYVLDR 332 (527)
T ss_pred EEeccCCcEEEEEEEeCCCceEEEEEC
Confidence 33335666 7888999998888874
No 437
>PHA02790 Kelch-like protein; Provisional
Probab=83.53 E-value=30 Score=30.25 Aligned_cols=180 Identities=12% Similarity=0.081 Sum_probs=81.9
Q ss_pred CeeEEEeeCCC-----eEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCC--eEEEEeCCCcccce
Q 024451 59 DTHLITSSGDQ-----TCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDS--TARLWDTRVASRAV 131 (267)
Q Consensus 59 ~~~l~s~~~d~-----~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~--~i~iwd~~~~~~~~ 131 (267)
+..++.||.++ ++..||..+..-...-+.. ....-.++... ++++++.||.++ .+..||.... ..
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~----~~r~~~~~v~~--~~~iYviGG~~~~~sve~ydp~~n--~W 343 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMN----SPRLYASGVPA--NNKLYVVGGLPNPTSVERWFHGDA--AW 343 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCC----chhhcceEEEE--CCEEEEECCcCCCCceEEEECCCC--eE
Confidence 34566676543 4667887765432221110 11111122222 467888888643 4677776432 12
Q ss_pred EEeeccccce-eEEEEecCCCEEEEeeCCC---cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCC
Q 024451 132 RTFHGHEGDV-NTVKFFPDGNRFGTGSDDG---TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG 207 (267)
Q Consensus 132 ~~~~~~~~~i-~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg 207 (267)
.....-..+. ......-+++..+.||.++ .+..||.++.+-.. ......+.....+..-++...+.| |
T Consensus 344 ~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~-----~~~m~~~r~~~~~~~~~~~IYv~G---G 415 (480)
T PHA02790 344 VNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQF-----GPSTYYPHYKSCALVFGRRLFLVG---R 415 (480)
T ss_pred EECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEe-----CCCCCCccccceEEEECCEEEEEC---C
Confidence 2221111111 1111223577777777553 46778887643211 111111111111123456666666 3
Q ss_pred eEEEEeCCccc--eeeecccccCCccceEEEEEECCCCCeEEEeECC-----CcEEEEec
Q 024451 208 DCYVWDTLLAK--VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD-----TNLKIWAF 260 (267)
Q Consensus 208 ~i~i~d~~~~~--~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d-----g~i~~w~~ 260 (267)
.+..||..+.+ .+..+. ..... .+++. .+|++.+.|+.+ ..+..||.
T Consensus 416 ~~e~ydp~~~~W~~~~~m~---~~r~~--~~~~v-~~~~IYviGG~~~~~~~~~ve~Yd~ 469 (480)
T PHA02790 416 NAEFYCESSNTWTLIDDPI---YPRDN--PELII-VDNKLLLIGGFYRGSYIDTIEVYNN 469 (480)
T ss_pred ceEEecCCCCcEeEcCCCC---CCccc--cEEEE-ECCEEEEECCcCCCcccceEEEEEC
Confidence 46678865432 222221 11111 12222 367888888765 24556654
No 438
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=82.97 E-value=33 Score=30.40 Aligned_cols=157 Identities=17% Similarity=0.129 Sum_probs=83.9
Q ss_pred eEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceE-EEEEeCCCCeEEEEec-----CCCeEEEEeCCCcccceEEe
Q 024451 61 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVL-SVSISGSNSRMFVSGS-----CDSTARLWDTRVASRAVRTF 134 (267)
Q Consensus 61 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~s~~-----~d~~i~iwd~~~~~~~~~~~ 134 (267)
.++.++.|+.|.-.|..+++.+......... ....+. +-.+. ++.+++..+ .+|.|.-+|.++++...+..
T Consensus 122 ~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~-~~~~~tssP~v~--~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 122 KVFFGTLDARLVALDAKTGKVVWSKKNGDYK-AGYTITAAPLVV--KGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred EEEEEcCCCEEEEEECCCCCEEeeccccccc-ccccccCCcEEE--CCEEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 4677888999999999999876554321000 000111 11111 234433221 36788888876544322211
Q ss_pred ec-----------------------------c-cccee-EEEEecCCCEEEEee-C----CC-----------cEEEEeC
Q 024451 135 HG-----------------------------H-EGDVN-TVKFFPDGNRFGTGS-D----DG-----------TCRLFDI 167 (267)
Q Consensus 135 ~~-----------------------------~-~~~i~-~~~~~~~~~~l~~~~-~----d~-----------~i~iwd~ 167 (267)
.. + ...+. ...+.|..+++..+. . ++ +|.-.|.
T Consensus 199 ~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~ 278 (527)
T TIGR03075 199 TVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDP 278 (527)
T ss_pred CcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcc
Confidence 10 0 01121 346666555555443 1 12 5667788
Q ss_pred CCCeeeEEEEeecCCCCC----CcEEEEEEccCCC---EEEEEEeCCeEEEEeCCcccee
Q 024451 168 RTGHQLQVYYQQHGENEI----PHVTSIAFSISGR---LLFAGYSNGDCYVWDTLLAKVV 220 (267)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~----~~v~~~~~s~~~~---~l~~g~~dg~i~i~d~~~~~~~ 220 (267)
++++..-.+...+..... ....-+....+|+ .++.+..+|.+++.|..+++.+
T Consensus 279 ~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 279 DTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred ccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 888876655432221110 1112223335665 7788999999999999888765
No 439
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=82.86 E-value=27 Score=29.33 Aligned_cols=156 Identities=17% Similarity=0.248 Sum_probs=68.8
Q ss_pred eEEEEEeCCCCeEEEE---ecCCCe-EEEEeCCCcccceEEeeccc--cceeEEEEecCCCEEEE-----eeCCCcEEEE
Q 024451 97 VLSVSISGSNSRMFVS---GSCDST-ARLWDTRVASRAVRTFHGHE--GDVNTVKFFPDGNRFGT-----GSDDGTCRLF 165 (267)
Q Consensus 97 i~~~~~~~~~~~~~~s---~~~d~~-i~iwd~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~-----~~~d~~i~iw 165 (267)
+.-+-++|.+..++.- |-.+.. -|||=++......+.+..+. ..+.-=-|.|+|+.+.- ++.+..|.-+
T Consensus 190 lgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~ 269 (386)
T PF14583_consen 190 LGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGY 269 (386)
T ss_dssp EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE
T ss_pred ccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEee
Confidence 4456677766555544 334442 47886654443333333222 22333456888876542 2345567778
Q ss_pred eCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCC----------------eEEEEeCCccceeeecc---cc
Q 024451 166 DIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNG----------------DCYVWDTLLAKVVLNLG---SL 226 (267)
Q Consensus 166 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg----------------~i~i~d~~~~~~~~~~~---~~ 226 (267)
|+.+++.... ... +....+--+++|.+++.=+.|. .|++++.+..+...-.. ++
T Consensus 270 d~~t~~~~~~-~~~------p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw 342 (386)
T PF14583_consen 270 DPDTGERRRL-MEM------PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSW 342 (386)
T ss_dssp -TTT--EEEE-EEE-------SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-----
T ss_pred CCCCCCceEE-EeC------CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcc
Confidence 8887754332 111 1344555578888776533331 45667776544321000 00
Q ss_pred --cCCccc-eEEEEEECCCCCeEEE-eECCCcEEEEe
Q 024451 227 --QNSHEG-RITCLGLSADGSALCT-GSWDTNLKIWA 259 (267)
Q Consensus 227 --~~~~~~-~v~~~~~~p~~~~l~s-gs~dg~i~~w~ 259 (267)
...+.. .=....|+|||++++- ...+|...||.
T Consensus 343 ~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~ 379 (386)
T PF14583_consen 343 KVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYL 379 (386)
T ss_dssp --BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEE
T ss_pred eeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEE
Confidence 000100 1134789999998764 55588888875
No 440
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.28 E-value=41 Score=32.82 Aligned_cols=155 Identities=13% Similarity=0.181 Sum_probs=82.3
Q ss_pred EEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCC-------CeEEEEecCCCeEEEEe
Q 024451 51 CCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSN-------SRMFVSGSCDSTARLWD 123 (267)
Q Consensus 51 ~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------~~~~~s~~~d~~i~iwd 123 (267)
.+.+.|.-.+ +=.+-|+.+.+|+.+++.....+. +-+..|..|...-+. -++++.-+.--.|.++-
T Consensus 83 ~mGiFpeI~R--aWiTiDn~L~lWny~~~~e~~~~d-----~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilg 155 (1311)
T KOG1900|consen 83 DMGIFPEIGR--AWITIDNNLFLWNYESDNELAEYD-----GLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILG 155 (1311)
T ss_pred eeccchhhcc--eEEEeCCeEEEEEcCCCCcccccc-----chhhhheeeeeecCCCCcchhhhheeEEecccceEEEEE
Confidence 3455564332 223569999999999865444443 223344444433111 11222223333444443
Q ss_pred CCCcc--cceE------EeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCe--------ee-------------E
Q 024451 124 TRVAS--RAVR------TFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH--------QL-------------Q 174 (267)
Q Consensus 124 ~~~~~--~~~~------~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--------~~-------------~ 174 (267)
+.... .... .+...+..|.++....+|+.|.+| .|| .+|.+.... +. .
T Consensus 156 V~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G-~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvP 232 (1311)
T KOG1900|consen 156 VSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAG-RDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVP 232 (1311)
T ss_pred EEeccccCcccccccceeeecCCceEEEEEeccCCcEEEee-cCC--CEEEEEEeccCchhhcccccccCchhHHHHhhh
Confidence 22111 0111 111224557888877788877764 455 555543210 00 0
Q ss_pred EEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCc
Q 024451 175 VYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL 216 (267)
Q Consensus 175 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~ 216 (267)
.+.+.. ..+..+|..+..+...+.+.+-+..|.+..||...
T Consensus 233 s~~~~~-~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 233 SLLSVP-GSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred hhhcCC-CCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 000100 12345788999998889999999999999999755
No 441
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=81.34 E-value=26 Score=28.12 Aligned_cols=94 Identities=19% Similarity=0.229 Sum_probs=52.8
Q ss_pred CCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEE------eCCeEEEEeCCccceeeeccc-ccCCcc
Q 024451 159 DGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY------SNGDCYVWDTLLAKVVLNLGS-LQNSHE 231 (267)
Q Consensus 159 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~------~dg~i~i~d~~~~~~~~~~~~-~~~~~~ 231 (267)
-..|++||..+.+- .....+-.+.|.++.|..+.+.+++|. ....+..||.....-. .+.. ....-.
T Consensus 15 C~~lC~yd~~~~qW-----~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~s~~ip 88 (281)
T PF12768_consen 15 CPGLCLYDTDNSQW-----SSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGSSNSIP 88 (281)
T ss_pred CCEEEEEECCCCEe-----ecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee-ecCCcccccCC
Confidence 34699999876542 222233445799999987777888875 3457888987654321 1111 001234
Q ss_pred ceEEEEEEC-CC-CCeEEEeE-CCCcEEEE
Q 024451 232 GRITCLGLS-AD-GSALCTGS-WDTNLKIW 258 (267)
Q Consensus 232 ~~v~~~~~~-p~-~~~l~sgs-~dg~i~~w 258 (267)
++|..+.+. .| .++.+.|. .+|...|.
T Consensus 89 gpv~a~~~~~~d~~~~~~aG~~~~g~~~l~ 118 (281)
T PF12768_consen 89 GPVTALTFISNDGSNFWVAGRSANGSTFLM 118 (281)
T ss_pred CcEEEEEeeccCCceEEEeceecCCCceEE
Confidence 677777763 23 33444443 34443333
No 442
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=80.96 E-value=34 Score=29.20 Aligned_cols=29 Identities=21% Similarity=0.478 Sum_probs=24.8
Q ss_pred eEEEEEECCCCCeEEEeECCCcEEEEecC
Q 024451 233 RITCLGLSADGSALCTGSWDTNLKIWAFG 261 (267)
Q Consensus 233 ~v~~~~~~p~~~~l~sgs~dg~i~~w~~~ 261 (267)
.|..++..+..+.|.+-+.+|.|.+|+++
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~ 219 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLG 219 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE-
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEEe
Confidence 49999999988999999999999999985
No 443
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=80.95 E-value=38 Score=29.67 Aligned_cols=61 Identities=18% Similarity=0.265 Sum_probs=44.7
Q ss_pred CCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCC
Q 024451 106 NSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR 168 (267)
Q Consensus 106 ~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~ 168 (267)
...+++.++..|.||+||-- +......+.+-...|-.+....+|+++++.+.. .+.+-|++
T Consensus 572 esGyIa~as~kGDirLyDRi-g~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL~d~~ 632 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRI-GKRAKTALPGLGDAIKHIDVTANGKHILATCKN-YLLLTDVP 632 (776)
T ss_pred cCceEEEecCCCceeeehhh-cchhhhcCcccccceeeeEeecCCcEEEEeecc-eEEEEecc
Confidence 34578999999999999953 333334455666778889999999988776653 67777764
No 444
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=80.82 E-value=34 Score=29.08 Aligned_cols=110 Identities=16% Similarity=0.186 Sum_probs=56.9
Q ss_pred eEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCcccee-
Q 024451 142 NTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVV- 220 (267)
Q Consensus 142 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~- 220 (267)
..+...+++.+++.+..-.-++-||-- +.. ++.........+.++.|.+++..++++ ..|.+..-+ ..++.-
T Consensus 242 ~~v~~~~dG~~~~vg~~G~~~~s~d~G--~~~---W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~S~-d~G~~~~ 314 (398)
T PLN00033 242 STVNRSPDGDYVAVSSRGNFYLTWEPG--QPY---WQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYVSK-GTGLTEE 314 (398)
T ss_pred eeEEEcCCCCEEEEECCccEEEecCCC--Ccc---eEEecCCCccceeeeeEcCCCCEEEEe-CCceEEEec-CCCCccc
Confidence 344556677666665544334444432 111 111112223457889999999988877 555554322 222110
Q ss_pred -eecccccCC-ccceEEEEEECCCCCeEEEeECCCcEEEEe
Q 024451 221 -LNLGSLQNS-HEGRITCLGLSADGSALCTGSWDTNLKIWA 259 (267)
Q Consensus 221 -~~~~~~~~~-~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~ 259 (267)
..+...... -...+..+.|.+++..+++| .+|.+....
T Consensus 315 ~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~ 354 (398)
T PLN00033 315 DFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST 354 (398)
T ss_pred ccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC
Confidence 011111111 12358889999888877765 567766653
No 445
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=80.79 E-value=34 Score=29.07 Aligned_cols=115 Identities=11% Similarity=0.050 Sum_probs=62.7
Q ss_pred ccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeE--EEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCC
Q 024451 138 EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQ--VYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTL 215 (267)
Q Consensus 138 ~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~ 215 (267)
...+..+.+.+++..++++ .+|.+. +....++.-. .+...........+.++.|.+++..+++| .+|.+.... .
T Consensus 280 ~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D 355 (398)
T PLN00033 280 ARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-D 355 (398)
T ss_pred ccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-C
Confidence 3457888998888877654 556644 3333332110 11111111112347888999888877777 566655543 1
Q ss_pred ccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEE
Q 024451 216 LAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIW 258 (267)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w 258 (267)
.++.-..... ...-...+..+.|.++++.+++| .+|.|.-|
T Consensus 356 ~G~tW~~~~~-~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 356 GGKSWKRDKG-ADNIAANLYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred CCcceeEccc-cCCCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence 2221111100 01224567899998888888865 57776554
No 446
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=79.29 E-value=26 Score=26.78 Aligned_cols=48 Identities=19% Similarity=0.288 Sum_probs=33.0
Q ss_pred CeEEEEecCCCeEEEEeCCCcc-cceEEeeccccceeEEEEecCCCEEEEe
Q 024451 107 SRMFVSGSCDSTARLWDTRVAS-RAVRTFHGHEGDVNTVKFFPDGNRFGTG 156 (267)
Q Consensus 107 ~~~~~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 156 (267)
+.+|++ .....|.+|++.... .....+. --+.|..+.++..|+|+++-
T Consensus 29 d~Lfva-~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTl 77 (215)
T PF14761_consen 29 DALFVA-ASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVTL 77 (215)
T ss_pred ceEEEE-cCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEEE
Confidence 444444 555679999987322 2334443 34789999999999999986
No 447
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=78.35 E-value=6.1 Score=19.04 Aligned_cols=26 Identities=15% Similarity=0.238 Sum_probs=20.2
Q ss_pred ceEEEEEECCCCCeEEEeECCCcEEEEe
Q 024451 232 GRITCLGLSADGSALCTGSWDTNLKIWA 259 (267)
Q Consensus 232 ~~v~~~~~~p~~~~l~sgs~dg~i~~w~ 259 (267)
+.|.+++..+ .+++.+..-+.+|+|.
T Consensus 2 E~i~aia~g~--~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 2 EEIEAIAAGD--SWVAVATSAGYLRIFS 27 (27)
T ss_pred ceEEEEEccC--CEEEEEeCCCeEEecC
Confidence 4578888765 5888888889999883
No 448
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=77.95 E-value=37 Score=27.88 Aligned_cols=112 Identities=19% Similarity=0.255 Sum_probs=59.9
Q ss_pred cceeEEEEecCCCEEEEeeCCCc------EEEEeCCCC----eeeEE-----EEeecCCC---CCCcEEEEEEccCCCEE
Q 024451 139 GDVNTVKFFPDGNRFGTGSDDGT------CRLFDIRTG----HQLQV-----YYQQHGEN---EIPHVTSIAFSISGRLL 200 (267)
Q Consensus 139 ~~i~~~~~~~~~~~l~~~~~d~~------i~iwd~~~~----~~~~~-----~~~~~~~~---~~~~v~~~~~s~~~~~l 200 (267)
+.+..+.+.|++..+++.+.++. +..+++... ..+.. +....+.. .....-++++.+++.++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 45677777765556666676666 444444320 00000 00000000 00123467777788777
Q ss_pred EEEEeC------CeEEEEeCCccceeeec---cc--------ccCCccceEEEEEECCCCCeEEEeEC
Q 024451 201 FAGYSN------GDCYVWDTLLAKVVLNL---GS--------LQNSHEGRITCLGLSADGSALCTGSW 251 (267)
Q Consensus 201 ~~g~~d------g~i~i~d~~~~~~~~~~---~~--------~~~~~~~~v~~~~~~p~~~~l~sgs~ 251 (267)
++.-.+ -.|+-++.. ++....+ .. .....+....+++++|+|+.|.++.+
T Consensus 100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 776666 678888854 3332211 00 11124567999999999996655444
No 449
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=77.78 E-value=0.34 Score=41.09 Aligned_cols=145 Identities=11% Similarity=0.173 Sum_probs=86.8
Q ss_pred eeeCCCCCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeE
Q 024451 3 CAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRT 82 (267)
Q Consensus 3 ~~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 82 (267)
..|.|.+.-++.++.+..+..||-...-..+. .-++..-.++|..+++..++.+-..+.+.+||+.+....
T Consensus 40 ~~w~~e~~nlavaca~tiv~~YD~agq~~le~---------n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq 110 (615)
T KOG2247|consen 40 HRWRPEGHNLAVACANTIVIYYDKAGQVILEL---------NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ 110 (615)
T ss_pred eeEecCCCceehhhhhhHHHhhhhhcceeccc---------CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH
Confidence 45778887799999999999998543211111 112223345666666666777788899999999865321
Q ss_pred EEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcE
Q 024451 83 SVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTC 162 (267)
Q Consensus 83 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i 162 (267)
.. +....|.... +.|++ ....++.+...+.+.|++-...+. +-....|...+.++++.+.+ +.+.++.|..+
T Consensus 111 qL---E~gg~~s~sl--l~wsK-g~~el~ig~~~gn~viynhgtsR~-iiv~Gkh~RRgtq~av~lEd-~vil~dcd~~L 182 (615)
T KOG2247|consen 111 QL---ESGGTSSKSL--LAWSK-GTPELVIGNNAGNIVIYNHGTSRR-IIVMGKHQRRGTQIAVTLED-YVILCDCDNTL 182 (615)
T ss_pred HH---hccCcchHHH--Hhhcc-CCccccccccccceEEEeccchhh-hhhhcccccceeEEEecccc-eeeecCcHHHH
Confidence 11 1111122222 33543 334556677888999998764332 22222277888999998764 45555656554
Q ss_pred EE
Q 024451 163 RL 164 (267)
Q Consensus 163 ~i 164 (267)
.+
T Consensus 183 ~v 184 (615)
T KOG2247|consen 183 SV 184 (615)
T ss_pred HH
Confidence 43
No 450
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=77.48 E-value=34 Score=27.15 Aligned_cols=111 Identities=19% Similarity=0.205 Sum_probs=64.6
Q ss_pred eeEEEEecCCCEEEEeeCCC--cEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccc
Q 024451 141 VNTVKFFPDGNRFGTGSDDG--TCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK 218 (267)
Q Consensus 141 i~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~ 218 (267)
...+.|..++.++-+.|.-| .|+.+|+.+++......-.. ...--.++.. ++........++...+||..+.+
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~----~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~ 121 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPP----RYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLK 121 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TT----T--EEEEEEE-TTEEEEEESSSSEEEEEETTTTE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCc----cccceeEEEE-CCEEEEEEecCCeEEEEccccce
Confidence 34677767788888888766 69999999987654322111 1111233322 44556667789999999998877
Q ss_pred eeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCce
Q 024451 219 VVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGY 263 (267)
Q Consensus 219 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~ 263 (267)
.+..+.. .. .=+.++ .+++.|+.......+..+|...+
T Consensus 122 ~~~~~~y---~~--EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f 159 (264)
T PF05096_consen 122 KIGTFPY---PG--EGWGLT--SDGKRLIMSDGSSRLYFLDPETF 159 (264)
T ss_dssp EEEEEE----SS--S--EEE--ECSSCEEEE-SSSEEEEE-TTT-
T ss_pred EEEEEec---CC--cceEEE--cCCCEEEEECCccceEEECCccc
Confidence 6655422 22 335666 45666665544455666665443
No 451
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=77.38 E-value=5.6 Score=19.13 Aligned_cols=24 Identities=13% Similarity=0.361 Sum_probs=14.5
Q ss_pred EEEEECCCCCeEEEeECCCcEEEE
Q 024451 235 TCLGLSADGSALCTGSWDTNLKIW 258 (267)
Q Consensus 235 ~~~~~~p~~~~l~sgs~dg~i~~w 258 (267)
..++++++|+++++=+....|++|
T Consensus 5 ~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 5 HGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEETTSEEEEEECCCTEEEEE
T ss_pred cEEEEeCCCCEEEEECCCCEEEEC
Confidence 456666777776665555555543
No 452
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=76.97 E-value=65 Score=30.11 Aligned_cols=70 Identities=16% Similarity=0.035 Sum_probs=49.6
Q ss_pred cEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeec----c-----------cccCCccceEEEEEECCCCCeEEEeEC
Q 024451 187 HVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNL----G-----------SLQNSHEGRITCLGLSADGSALCTGSW 251 (267)
Q Consensus 187 ~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~----~-----------~~~~~~~~~v~~~~~~p~~~~l~sgs~ 251 (267)
.|.++....-+.+++....||.|.++|..+.+.+... . ++...+..++..++|||++..++.-..
T Consensus 261 ~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~~ 340 (753)
T PF11635_consen 261 RVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQIDE 340 (753)
T ss_pred eEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEec
Confidence 4667776667788999999999999997665433222 0 111122234556899999999999899
Q ss_pred CCcEE
Q 024451 252 DTNLK 256 (267)
Q Consensus 252 dg~i~ 256 (267)
||.+.
T Consensus 341 ~~~~~ 345 (753)
T PF11635_consen 341 DGKTK 345 (753)
T ss_pred CCCce
Confidence 99866
No 453
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=74.36 E-value=32 Score=25.26 Aligned_cols=30 Identities=13% Similarity=0.180 Sum_probs=20.7
Q ss_pred eEEEEEEecCC-----CeeEEEeeCCCeEEEEeCC
Q 024451 48 YVSCCQYVPDE-----DTHLITSSGDQTCVLWDIT 77 (267)
Q Consensus 48 ~v~~~~~~~~~-----~~~l~s~~~d~~v~iwd~~ 77 (267)
.|..++|+|.+ .-+|+.-+.++.|.||...
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 57778888743 2357777778888888654
No 454
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.80 E-value=46 Score=26.84 Aligned_cols=100 Identities=14% Similarity=0.191 Sum_probs=59.7
Q ss_pred EEEEecCCCeeEEEeeCCCe-EEEEeCCCCeeEEEeCCcc---ccCCccceEEEEEeCCCCeEEEEe----cCCCeEEEE
Q 024451 51 CCQYVPDEDTHLITSSGDQT-CVLWDITTGLRTSVFGGEF---QSGHTADVLSVSISGSNSRMFVSG----SCDSTARLW 122 (267)
Q Consensus 51 ~~~~~~~~~~~l~s~~~d~~-v~iwd~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~~s~----~~d~~i~iw 122 (267)
.+.|+|....-++-+-.-|+ ..++|.+......++.... ..+|. .|+++..-+++|- ..-|.|-||
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG------vfs~dG~~LYATEndfd~~rGViGvY 145 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG------VFSPDGRLLYATENDFDPNRGVIGVY 145 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeeccc------ccCCCCcEEEeecCCCCCCCceEEEE
Confidence 35666665555666666655 4567777654444432211 12232 2454333233332 234678899
Q ss_pred eCCCcccceEEeeccccceeEEEEecCCCEEEEe
Q 024451 123 DTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTG 156 (267)
Q Consensus 123 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 156 (267)
|.+..-..+..+..|.-.-+.+.+.+||..++.+
T Consensus 146 d~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvva 179 (366)
T COG3490 146 DAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVA 179 (366)
T ss_pred ecccccceecccccCCcCcceeEEecCCcEEEEe
Confidence 9875545566777787777899999999988765
No 455
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=72.33 E-value=10 Score=18.63 Aligned_cols=23 Identities=17% Similarity=0.497 Sum_probs=17.7
Q ss_pred EEEEEEeCCeEEEEeCCccceee
Q 024451 199 LLFAGYSNGDCYVWDTLLAKVVL 221 (267)
Q Consensus 199 ~l~~g~~dg~i~i~d~~~~~~~~ 221 (267)
.+++++.+|.++.+|..+++...
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W 30 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILW 30 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEE
Confidence 57777888999999987766543
No 456
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=72.10 E-value=12 Score=19.36 Aligned_cols=27 Identities=15% Similarity=0.175 Sum_probs=18.4
Q ss_pred eEEEEEEecCCCeeEEEeeCC--CeEEEE
Q 024451 48 YVSCCQYVPDEDTHLITSSGD--QTCVLW 74 (267)
Q Consensus 48 ~v~~~~~~~~~~~~l~s~~~d--~~v~iw 74 (267)
.-....|+|++..+++++..+ |.-.||
T Consensus 10 ~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 10 DDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 455678999988777777776 666555
No 457
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=71.31 E-value=66 Score=27.66 Aligned_cols=132 Identities=14% Similarity=0.106 Sum_probs=59.0
Q ss_pred CCeEEEEeCCCCeeEEEeCCccccCCcc-ceEEEEEeCC--CCeEEEEecCCCeEEEEeC-CCcc----cceEEeec---
Q 024451 68 DQTCVLWDITTGLRTSVFGGEFQSGHTA-DVLSVSISGS--NSRMFVSGSCDSTARLWDT-RVAS----RAVRTFHG--- 136 (267)
Q Consensus 68 d~~v~iwd~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~--~~~~~~s~~~d~~i~iwd~-~~~~----~~~~~~~~--- 136 (267)
-.++.+||+.+.+.++++.. +.+. ....+.|... ...-|+.+.-.++|-.|-. .... +.+. +..
T Consensus 221 G~~l~vWD~~~r~~~Q~idL----g~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~-ip~~~v 295 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTIDL----GEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVID-IPAKKV 295 (461)
T ss_dssp --EEEEEETTTTEEEEEEES-----TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEE-E--EE-
T ss_pred cCeEEEEECCCCcEeeEEec----CCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEE-CCCccc
Confidence 56899999999887777642 2222 3456666532 2333444444444444421 1111 1111 110
Q ss_pred --------------cccceeEEEEecCCCEEEEe-eCCCcEEEEeCCCCeeeEEEEeecCC--------------CCCCc
Q 024451 137 --------------HEGDVNTVKFFPDGNRFGTG-SDDGTCRLFDIRTGHQLQVYYQQHGE--------------NEIPH 187 (267)
Q Consensus 137 --------------~~~~i~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~--------------~~~~~ 187 (267)
-..-|+.+..+.|.++|... --+|.+|-||+.........-+.... .-.+.
T Consensus 296 ~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~Gg 375 (461)
T PF05694_consen 296 EGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGG 375 (461)
T ss_dssp -SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S-
T ss_pred CcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCC
Confidence 02346889999999988654 47999999999875443322211100 00112
Q ss_pred EEEEEEccCCCEEEEEE
Q 024451 188 VTSIAFSISGRLLFAGY 204 (267)
Q Consensus 188 v~~~~~s~~~~~l~~g~ 204 (267)
...+..|.||+.|...+
T Consensus 376 PqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 376 PQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp ---EEE-TTSSEEEEE-
T ss_pred CCeEEEccCCeEEEEEe
Confidence 45677788888776654
No 458
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=70.80 E-value=17 Score=20.98 Aligned_cols=19 Identities=26% Similarity=0.443 Sum_probs=14.8
Q ss_pred eEEEEEECCCCCeEEEeEC
Q 024451 233 RITCLGLSADGSALCTGSW 251 (267)
Q Consensus 233 ~v~~~~~~p~~~~l~sgs~ 251 (267)
...++++.|||++|+.|..
T Consensus 2 ~~~~~~~q~DGkIlv~G~~ 20 (55)
T TIGR02608 2 RAYAVAVQSDGKILVAGYV 20 (55)
T ss_pred ceEEEEECCCCcEEEEEEe
Confidence 3567888899999988853
No 459
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=70.26 E-value=70 Score=27.52 Aligned_cols=35 Identities=17% Similarity=0.161 Sum_probs=22.2
Q ss_pred cceEEEEEeCCCCeEEEEecCCCeEEEEeCCCccc
Q 024451 95 ADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASR 129 (267)
Q Consensus 95 ~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~ 129 (267)
.-++.+.++..+..+++++-.+|.++-||+.....
T Consensus 312 ~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~ 346 (461)
T PF05694_consen 312 PLITDILISLDDRFLYVSNWLHGDVRQYDISDPFN 346 (461)
T ss_dssp -----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS
T ss_pred CceEeEEEccCCCEEEEEcccCCcEEEEecCCCCC
Confidence 34678888877777788889999999999875543
No 460
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=68.72 E-value=63 Score=26.35 Aligned_cols=123 Identities=16% Similarity=0.210 Sum_probs=64.8
Q ss_pred eeEEEEecCCCEEEEeeCCCcEEEEeCC------CCeeeEE-EEeecCCCCCCcEEEEEEccCCCE------------EE
Q 024451 141 VNTVKFFPDGNRFGTGSDDGTCRLFDIR------TGHQLQV-YYQQHGENEIPHVTSIAFSISGRL------------LF 201 (267)
Q Consensus 141 i~~~~~~~~~~~l~~~~~d~~i~iwd~~------~~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~------------l~ 201 (267)
-+.++++|.+..-++...-+...+||.. ..+.+.. +............+.+.|+....+ ++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 4679999988888877778899999986 1222221 111111112234566666643333 46
Q ss_pred EEEeCCeEEEEeCCccce--eeecccccCCccce-EEEEEECC--CCCeEE-EeECCCcEEEEecCceE
Q 024451 202 AGYSNGDCYVWDTLLAKV--VLNLGSLQNSHEGR-ITCLGLSA--DGSALC-TGSWDTNLKIWAFGGYR 264 (267)
Q Consensus 202 ~g~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~~-v~~~~~~p--~~~~l~-sgs~dg~i~~w~~~~~~ 264 (267)
.+++||.|.-|....... ..........-.+. -..+++.. .+.+|. +=-..++|.+|| ..++
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd-~~f~ 172 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFK-GSFR 172 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEec-Cccc
Confidence 667899999998432211 00000001111122 23345543 345554 334578899887 4444
No 461
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=68.44 E-value=38 Score=23.76 Aligned_cols=108 Identities=10% Similarity=0.080 Sum_probs=55.6
Q ss_pred EEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEe-e-cCCCCCCcEEEEE---Ec--cCCCEEEEEEeCCeEEEEeCCcc
Q 024451 145 KFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQ-Q-HGENEIPHVTSIA---FS--ISGRLLFAGYSNGDCYVWDTLLA 217 (267)
Q Consensus 145 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~-~~~~~~~~v~~~~---~s--~~~~~l~~g~~dg~i~i~d~~~~ 217 (267)
.|......|++++.-++|.|.+............ . ..-+-...|++++ |. .+...|+.|+. ..|..||...+
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~N 83 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENN 83 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcccC
Confidence 4545555788888888999988754321110000 0 0001112456654 43 24567888854 46789998776
Q ss_pred ceeeecccccCCccceEEEEEEC---C-CCCeEEEeECCCcEEEEe
Q 024451 218 KVVLNLGSLQNSHEGRITCLGLS---A-DGSALCTGSWDTNLKIWA 259 (267)
Q Consensus 218 ~~~~~~~~~~~~~~~~v~~~~~~---p-~~~~l~sgs~dg~i~~w~ 259 (267)
.-+.. +.-.+.|.++.+- . ...+++.|+ +..|.=|+
T Consensus 84 ~d~Fy-----ke~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd 123 (136)
T PF14781_consen 84 SDLFY-----KEVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFD 123 (136)
T ss_pred chhhh-----hhCccceeEEEEEecCCCCCcEEEECc-eEEEEEeC
Confidence 54321 2233456666552 2 244555554 34444443
No 462
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=67.42 E-value=40 Score=23.64 Aligned_cols=113 Identities=14% Similarity=0.148 Sum_probs=58.4
Q ss_pred eeCCCCCeEEEccCCCeEEEeecCCCCCCCC-CCcccccccCCeeeEEEEEEe---cCCCe-eEEEeeCCCeEEEEeCCC
Q 024451 4 AFSPTGQSVACGGLDSVCSIFNLNSPTDKDG-NLPVSRMLSGHKGYVSCCQYV---PDEDT-HLITSSGDQTCVLWDITT 78 (267)
Q Consensus 4 ~~~~~g~~l~~~~~d~~v~~w~~~~~~~~~~-~~~~~~~~~~h~~~v~~~~~~---~~~~~-~l~s~~~d~~v~iwd~~~ 78 (267)
.|......|+++..-|+|-|++......... .....+ +..-+..|+++.-- |+.+. .|+.| ...++..||+..
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~-~LNin~~italaaG~l~~~~~~D~LliG-t~t~llaYDV~~ 82 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDIS-FLNINQEITALAAGRLKPDDGRDCLLIG-TQTSLLAYDVEN 82 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCcee-EEECCCceEEEEEEecCCCCCcCEEEEe-ccceEEEEEccc
Confidence 4666777899999999999998765332211 111111 22234456665443 33222 34444 456788999976
Q ss_pred CeeEEEeCCccccCCccceEEEEEe---CCCCeEEEEecCCCeEEEEeCC
Q 024451 79 GLRTSVFGGEFQSGHTADVLSVSIS---GSNSRMFVSGSCDSTARLWDTR 125 (267)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~s~~~d~~i~iwd~~ 125 (267)
..... ..+ -.+-++++.+- ..... ++..+.+..|.-||..
T Consensus 83 N~d~F--yke----~~DGvn~i~~g~~~~~~~~-l~ivGGncsi~Gfd~~ 125 (136)
T PF14781_consen 83 NSDLF--YKE----VPDGVNAIVIGKLGDIPSP-LVIVGGNCSIQGFDYE 125 (136)
T ss_pred Cchhh--hhh----CccceeEEEEEecCCCCCc-EEEECceEEEEEeCCC
Confidence 43221 111 12334444442 11223 3344445666666643
No 463
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=66.98 E-value=16 Score=18.90 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=19.6
Q ss_pred EEEEEEeCCeEEEEeCCccceeeec
Q 024451 199 LLFAGYSNGDCYVWDTLLAKVVLNL 223 (267)
Q Consensus 199 ~l~~g~~dg~i~i~d~~~~~~~~~~ 223 (267)
.+.+++.+|.|+-.|..+++.+...
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~ 26 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKF 26 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEE
T ss_pred EEEEeCCCCEEEEEECCCCCEEEee
Confidence 3556688999999999998877654
No 464
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=66.53 E-value=20 Score=32.84 Aligned_cols=69 Identities=16% Similarity=0.230 Sum_probs=44.0
Q ss_pred cEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEEEecCc
Q 024451 187 HVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 187 ~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~ 262 (267)
.++++.-+|.++.++.+..||.|.+|+....+... +.. -..|-..+-|...| |++...|+.+.-|.-+|
T Consensus 16 ~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qsk-i~~----~~~p~~nlv~tnhg--l~~~tsdrr~la~~~dg 84 (1636)
T KOG3616|consen 16 FTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSK-ICE----EAKPKENLVFTNHG--LVTATSDRRALAWKEDG 84 (1636)
T ss_pred eeeeeeecCCCceEEEEecCCcEEEEeecccchhh-hhh----hcCCccceeeeccc--eEEEeccchhheeeccC
Confidence 46788888999999999999999999975443211 110 11122334455444 45555677777776544
No 465
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=65.84 E-value=70 Score=27.66 Aligned_cols=110 Identities=13% Similarity=0.111 Sum_probs=59.1
Q ss_pred CCCEEEEeeCCCcEEEE-eCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeeccccc
Q 024451 149 DGNRFGTGSDDGTCRLF-DIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQ 227 (267)
Q Consensus 149 ~~~~l~~~~~d~~i~iw-d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~ 227 (267)
.|.-+..+..||-|.-| |.+...................+.-+.-..+.+-+++=+.+|++..+.....+.+.. .
T Consensus 279 Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~-~--- 354 (733)
T COG4590 279 GGFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLF-E--- 354 (733)
T ss_pred CceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceeh-h---
Confidence 45567778888887766 444332211100000011111222222223344566667788887776444333321 1
Q ss_pred CCccceEEEEEECCCCCeEEEeECCCcEEEEecCceE
Q 024451 228 NSHEGRITCLGLSADGSALCTGSWDTNLKIWAFGGYR 264 (267)
Q Consensus 228 ~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~w~~~~~~ 264 (267)
.-.....-+++||++.+|++- ..|.++++.+.+..
T Consensus 355 -~~~~~~~~~~~Sp~~~~Ll~e-~~gki~~~~l~Nr~ 389 (733)
T COG4590 355 -RAYQAPQLVAMSPNQAYLLSE-DQGKIRLAQLENRN 389 (733)
T ss_pred -hhhcCcceeeeCcccchheee-cCCceEEEEecCCC
Confidence 112245568999999999974 46789998876543
No 466
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.68 E-value=1.2e+02 Score=28.07 Aligned_cols=29 Identities=7% Similarity=0.057 Sum_probs=24.6
Q ss_pred ceEEEEEECCCCCeEEEeECCCcEEEEec
Q 024451 232 GRITCLGLSADGSALCTGSWDTNLKIWAF 260 (267)
Q Consensus 232 ~~v~~~~~~p~~~~l~sgs~dg~i~~w~~ 260 (267)
+.+..+.+||+.++||.-...|.|.+-+.
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~ 245 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSI 245 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEec
Confidence 56788999999999999999998887654
No 467
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=63.78 E-value=37 Score=21.89 Aligned_cols=42 Identities=21% Similarity=0.212 Sum_probs=24.8
Q ss_pred EEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEe
Q 024451 203 GYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTG 249 (267)
Q Consensus 203 g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sg 249 (267)
+..+|.+.-||..+++...-+..+. --+.++++||+.+++.+
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~L~-----fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDGLY-----FPNGVALSPDESFVLVA 74 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEEES-----SEEEEEE-TTSSEEEEE
T ss_pred CCCCcCEEEEECCCCeEEEehhCCC-----ccCeEEEcCCCCEEEEE
Confidence 3456788889987765432222221 23789999999987764
No 468
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=62.33 E-value=1.4e+02 Score=28.06 Aligned_cols=115 Identities=13% Similarity=0.170 Sum_probs=68.8
Q ss_pred ceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcc----cceEEeecccc----------ceeEEEEecCCCEEEEeeCCCc
Q 024451 96 DVLSVSISGSNSRMFVSGSCDSTARLWDTRVAS----RAVRTFHGHEG----------DVNTVKFFPDGNRFGTGSDDGT 161 (267)
Q Consensus 96 ~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~----~~~~~~~~~~~----------~i~~~~~~~~~~~l~~~~~d~~ 161 (267)
....++|+|.+.+.|+.-...|...||++.... ........+.+ .-..+.|.++.+.|+.+.. ..
T Consensus 147 ~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~ 225 (765)
T PF10214_consen 147 PHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SK 225 (765)
T ss_pred ccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-Cc
Confidence 456788999888899999999999999992111 11111111112 2236778777777776654 57
Q ss_pred EEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccC--CCEEEEEEeCCeEEEEeCCc
Q 024451 162 CRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSIS--GRLLFAGYSNGDCYVWDTLL 216 (267)
Q Consensus 162 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~g~~dg~i~i~d~~~ 216 (267)
+.++|+++......+.. ......|..+.-++. +..++. +...|...|...
T Consensus 226 l~~~d~~~~~~~~~l~~---~~~~~~IlDv~~~~~~~~~~FiL--Ts~eiiw~~~~~ 277 (765)
T PF10214_consen 226 LMLIDFESNWQTEYLVT---AKTWSWILDVKRSPDNPSHVFIL--TSKEIIWLDVKS 277 (765)
T ss_pred eEEEECCCCCccchhcc---CCChhheeeEEecCCccceEEEE--ecCeEEEEEccC
Confidence 88899987655332111 122345777777766 233332 225566666554
No 469
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=61.95 E-value=16 Score=19.04 Aligned_cols=20 Identities=25% Similarity=0.624 Sum_probs=15.8
Q ss_pred CCCEEEEEEeCCeEEEEeCC
Q 024451 196 SGRLLFAGYSNGDCYVWDTL 215 (267)
Q Consensus 196 ~~~~l~~g~~dg~i~i~d~~ 215 (267)
.+..++.++.||.++.+|.+
T Consensus 20 ~~g~vyv~~~dg~l~ald~~ 39 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAA 39 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT
T ss_pred ECCEEEEEcCCCEEEEEeCC
Confidence 46688889999999999864
No 470
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=60.50 E-value=1.1e+02 Score=26.19 Aligned_cols=30 Identities=33% Similarity=0.486 Sum_probs=24.9
Q ss_pred cEEEEEEccCCCEEEEEEeCCeEEEEeCCc
Q 024451 187 HVTSIAFSISGRLLFAGYSNGDCYVWDTLL 216 (267)
Q Consensus 187 ~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~ 216 (267)
.+.+++..+..+.+++-..+|.|.+|++..
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 388899999899999999999999999864
No 471
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=60.13 E-value=23 Score=18.35 Aligned_cols=28 Identities=29% Similarity=0.379 Sum_probs=18.4
Q ss_pred cCCCeeEEEeeCCCeEEEEeCCCCeeEE
Q 024451 56 PDEDTHLITSSGDQTCVLWDITTGLRTS 83 (267)
Q Consensus 56 ~~~~~~l~s~~~d~~v~iwd~~~~~~~~ 83 (267)
|++..++++...+++|.++|..+.....
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~ 28 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIA 28 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEE
Confidence 3444455555668899999987765443
No 472
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=60.09 E-value=93 Score=25.31 Aligned_cols=147 Identities=13% Similarity=0.117 Sum_probs=83.0
Q ss_pred CCeEEEccCCCeEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEeeCCCeEEEEeCCCCeeEEEeCCc
Q 024451 9 GQSVACGGLDSVCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSSGDQTCVLWDITTGLRTSVFGGE 88 (267)
Q Consensus 9 g~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~ 88 (267)
+++...+.++.-+++.|...|+++.. .-+....+.-+++..+ +++...+..|.-.-+.|+.+..... +.++
T Consensus 96 e~yvyvad~ssGL~IvDIS~P~sP~~-----~~~lnt~gyaygv~vs---Gn~aYVadlddgfLivdvsdpssP~-lagr 166 (370)
T COG5276 96 EEYVYVADWSSGLRIVDISTPDSPTL-----IGFLNTDGYAYGVYVS---GNYAYVADLDDGFLIVDVSDPSSPQ-LAGR 166 (370)
T ss_pred ccEEEEEcCCCceEEEeccCCCCcce-----eccccCCceEEEEEec---CCEEEEeeccCcEEEEECCCCCCce-eeee
Confidence 44566677788899999988765422 1122222444555543 3577778877777789987654322 2222
Q ss_pred cccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceE--EeeccccceeEEEEecCCCEEEEeeCCCcEEEEe
Q 024451 89 FQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVR--TFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFD 166 (267)
Q Consensus 89 ~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd 166 (267)
... .......+.++. +..-.+..|+-+++-|+.....+.. +.. -...+.++..+++-.+++... .-+.+-|
T Consensus 167 ya~-~~~d~~~v~ISG---n~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~vsdnr~y~vvy~--egvlivd 239 (370)
T COG5276 167 YAL-PGGDTHDVAISG---NYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSVSDNRAYLVVYD--EGVLIVD 239 (370)
T ss_pred ecc-CCCCceeEEEec---CeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEEEEecCCeeEEEEcc--cceEEEe
Confidence 111 112224455543 2334567888999999865443322 221 123678888887766665433 3566666
Q ss_pred CCCCe
Q 024451 167 IRTGH 171 (267)
Q Consensus 167 ~~~~~ 171 (267)
....+
T Consensus 240 ~s~~s 244 (370)
T COG5276 240 VSGPS 244 (370)
T ss_pred cCCCC
Confidence 65544
No 473
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=58.37 E-value=46 Score=21.27 Aligned_cols=27 Identities=15% Similarity=0.224 Sum_probs=20.8
Q ss_pred EEEEEECCCCCeEEEeEC-CCcEEEEec
Q 024451 234 ITCLGLSADGSALCTGSW-DTNLKIWAF 260 (267)
Q Consensus 234 v~~~~~~p~~~~l~sgs~-dg~i~~w~~ 260 (267)
-+.+.++|++++|..++. .+.|.+|..
T Consensus 56 aNGI~~s~~~k~lyVa~~~~~~I~vy~~ 83 (86)
T PF01731_consen 56 ANGIAISPDKKYLYVASSLAHSIHVYKR 83 (86)
T ss_pred CceEEEcCCCCEEEEEeccCCeEEEEEe
Confidence 367899999998876554 678988864
No 474
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=58.25 E-value=33 Score=31.57 Aligned_cols=67 Identities=19% Similarity=0.390 Sum_probs=41.0
Q ss_pred cceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEe
Q 024451 139 GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWD 213 (267)
Q Consensus 139 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d 213 (267)
..+.++.-+|.+.-++.+..||+|++|+.....+... ... ..+...+.|...| +++..+|+.+.-|.
T Consensus 15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski-~~~-----~~p~~nlv~tnhg--l~~~tsdrr~la~~ 81 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKI-CEE-----AKPKENLVFTNHG--LVTATSDRRALAWK 81 (1636)
T ss_pred ceeeeeeecCCCceEEEEecCCcEEEEeecccchhhh-hhh-----cCCccceeeeccc--eEEEeccchhheee
Confidence 3467788889999999999999999999865433211 111 1122344454433 44555555555554
No 475
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=55.44 E-value=1.3e+02 Score=25.51 Aligned_cols=75 Identities=13% Similarity=0.188 Sum_probs=38.4
Q ss_pred EeCCCCeEEEEecCCCeEEEEeCCCcccceEEeeccc-cceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEE
Q 024451 102 ISGSNSRMFVSGSCDSTARLWDTRVASRAVRTFHGHE-GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVY 176 (267)
Q Consensus 102 ~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 176 (267)
|.+...+++..+..||.-.+|-+......+.++.... .......++|+.+.++-....+.++-.|+++.+....+
T Consensus 43 ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy 118 (386)
T PF14583_consen 43 FTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVY 118 (386)
T ss_dssp B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEE
T ss_pred cCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEE
Confidence 4445557777777777655554333344566665433 22335666787777765555678999999987654443
No 476
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=54.91 E-value=1.2e+02 Score=24.81 Aligned_cols=64 Identities=11% Similarity=0.166 Sum_probs=33.0
Q ss_pred CCeEEEEecCC-----CeEEEEeCCCcccceEEeec-c-ccceeEEEEecCCCEEEEeeCCCc----EEEEeCCCCe
Q 024451 106 NSRMFVSGSCD-----STARLWDTRVASRAVRTFHG-H-EGDVNTVKFFPDGNRFGTGSDDGT----CRLFDIRTGH 171 (267)
Q Consensus 106 ~~~~~~s~~~d-----~~i~iwd~~~~~~~~~~~~~-~-~~~i~~~~~~~~~~~l~~~~~d~~----i~iwd~~~~~ 171 (267)
++++++.|+.. ..+..||++.. ....+.. . ...........+++..+.|+.++. +..||+++.+
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQ--EWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCC--CeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 35677777742 35677777532 2332221 1 111122222335677777776543 4578887654
No 477
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=54.10 E-value=57 Score=21.02 Aligned_cols=42 Identities=12% Similarity=0.067 Sum_probs=26.4
Q ss_pred eCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEE
Q 024451 157 SDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGY 204 (267)
Q Consensus 157 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~ 204 (267)
..+|.+.-||+.+++.....-.- .....+++++++.+++.+-
T Consensus 34 ~~~GRll~ydp~t~~~~vl~~~L------~fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 34 RPTGRLLRYDPSTKETTVLLDGL------YFPNGVALSPDESFVLVAE 75 (89)
T ss_dssp ---EEEEEEETTTTEEEEEEEEE------SSEEEEEE-TTSSEEEEEE
T ss_pred CCCcCEEEEECCCCeEEEehhCC------CccCeEEEcCCCCEEEEEe
Confidence 44567888999887643332221 2468999999999887764
No 478
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=50.09 E-value=1.7e+02 Score=25.43 Aligned_cols=105 Identities=15% Similarity=0.153 Sum_probs=61.3
Q ss_pred CeEEEEecCCCeEEEE-eCCCcccc----eEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecC
Q 024451 107 SRMFVSGSCDSTARLW-DTRVASRA----VRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHG 181 (267)
Q Consensus 107 ~~~~~s~~~d~~i~iw-d~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 181 (267)
+.-++.+..||.|.=| |++....+ ++.++-...++.-+.--.+.+.|++-...|++.++.....+.+ +.+...
T Consensus 280 g~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~l--L~~~~~ 357 (733)
T COG4590 280 GFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLL--LFERAY 357 (733)
T ss_pred ceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcce--ehhhhh
Confidence 4456778889988876 55533221 1111111122222222223467888889999998876544332 121111
Q ss_pred CCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccc
Q 024451 182 ENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAK 218 (267)
Q Consensus 182 ~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~ 218 (267)
..+..+++||++.++++- ..|.++++.+.+..
T Consensus 358 ----~~~~~~~~Sp~~~~Ll~e-~~gki~~~~l~Nr~ 389 (733)
T COG4590 358 ----QAPQLVAMSPNQAYLLSE-DQGKIRLAQLENRN 389 (733)
T ss_pred ----cCcceeeeCcccchheee-cCCceEEEEecCCC
Confidence 235678899999998864 56788998876544
No 479
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=49.35 E-value=2.8e+02 Score=27.53 Aligned_cols=146 Identities=12% Similarity=0.045 Sum_probs=73.0
Q ss_pred CeeEEEeeC---------CCeEEEEeCCC----------CeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeE
Q 024451 59 DTHLITSSG---------DQTCVLWDITT----------GLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTA 119 (267)
Q Consensus 59 ~~~l~s~~~---------d~~v~iwd~~~----------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i 119 (267)
..+|+.|.. .|.+.|+|+-. ..+...+..+ -.+++|..++=. .+++ ++ +...+|
T Consensus 1046 k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~e---E~KGtVsavceV--~G~l-~~-~~GqKI 1118 (1366)
T KOG1896|consen 1046 KPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIE---EQKGTVSAVCEV--RGHL-LS-SQGQKI 1118 (1366)
T ss_pred cceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehh---hcccceEEEEEe--ccEE-EE-ccCcEE
Confidence 356776653 47788998732 1112221111 134455555433 3444 33 334578
Q ss_pred EEEeCCCcccceEEeeccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCC-
Q 024451 120 RLWDTRVASRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGR- 198 (267)
Q Consensus 120 ~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~- 198 (267)
.+|++......+-.-- -.-++......--++++..|.--+.|.+.-....--...+... ..+...+.+..|-.+|.
T Consensus 1119 ~v~~l~r~~~ligVaF-iD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~sr--d~~~l~v~s~EFLVdg~~ 1195 (1366)
T KOG1896|consen 1119 IVRKLDRDSELIGVAF-IDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSR--DFEPLNVYSTEFLVDGSN 1195 (1366)
T ss_pred EEEEeccCCcceeeEE-eccceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeec--CCchhhceeeeeEEcCCe
Confidence 8998843332221100 0112222222223456666665566666555432211112221 22234578888877766
Q ss_pred -EEEEEEeCCeEEEEeC
Q 024451 199 -LLFAGYSNGDCYVWDT 214 (267)
Q Consensus 199 -~l~~g~~dg~i~i~d~ 214 (267)
.++++..++.|++|-.
T Consensus 1196 L~flvsDa~rNi~vy~Y 1212 (1366)
T KOG1896|consen 1196 LSFLVSDADRNIHVYMY 1212 (1366)
T ss_pred eEEEEEcCCCcEEEEEe
Confidence 5677888999888754
No 480
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=47.96 E-value=41 Score=17.55 Aligned_cols=21 Identities=33% Similarity=0.607 Sum_probs=18.4
Q ss_pred cEEEEEEccCCCEEEEEEeCC
Q 024451 187 HVTSIAFSISGRLLFAGYSNG 207 (267)
Q Consensus 187 ~v~~~~~s~~~~~l~~g~~dg 207 (267)
....++++++|+..++|..++
T Consensus 14 ~~~~IavD~~GNiYv~G~T~~ 34 (38)
T PF06739_consen 14 YGNGIAVDSNGNIYVTGYTNG 34 (38)
T ss_pred eEEEEEECCCCCEEEEEeecC
Confidence 468899999999999998876
No 481
>PRK13684 Ycf48-like protein; Provisional
Probab=47.95 E-value=1.6e+02 Score=24.35 Aligned_cols=155 Identities=15% Similarity=0.111 Sum_probs=76.4
Q ss_pred cceEEEEEeCCCCeEEEEecCCCeEE-EEeCCCcccceEEee-ccccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCee
Q 024451 95 ADVLSVSISGSNSRMFVSGSCDSTAR-LWDTRVASRAVRTFH-GHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ 172 (267)
Q Consensus 95 ~~i~~~~~~~~~~~~~~s~~~d~~i~-iwd~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 172 (267)
..+..+.+.+ ++.+ +..+..|.+. .++ ........+. .-...+..+.+.++++.++. +..|.+.+=..+.+..
T Consensus 173 g~~~~i~~~~-~g~~-v~~g~~G~i~~s~~--~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~v-g~~G~~~~~s~d~G~s 247 (334)
T PRK13684 173 GVVRNLRRSP-DGKY-VAVSSRGNFYSTWE--PGQTAWTPHQRNSSRRLQSMGFQPDGNLWML-ARGGQIRFNDPDDLES 247 (334)
T ss_pred ceEEEEEECC-CCeE-EEEeCCceEEEEcC--CCCCeEEEeeCCCcccceeeeEcCCCCEEEE-ecCCEEEEccCCCCCc
Confidence 3456666664 3344 3444455443 222 1222222222 22356788999998887665 4567665322333322
Q ss_pred eEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECC
Q 024451 173 LQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWD 252 (267)
Q Consensus 173 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~d 252 (267)
-... ..........+.++.+.+++..+++| .+|.+.. ....++.-..... ...-......+.|..+++.+++| ..
T Consensus 248 W~~~-~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~~-S~d~G~tW~~~~~-~~~~~~~~~~~~~~~~~~~~~~G-~~ 322 (334)
T PRK13684 248 WSKP-IIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLLV-SKDGGKTWEKDPV-GEEVPSNFYKIVFLDPEKGFVLG-QR 322 (334)
T ss_pred cccc-cCCccccccceeeEEEcCCCCEEEEc-CCCeEEE-eCCCCCCCeECCc-CCCCCcceEEEEEeCCCceEEEC-CC
Confidence 1111 00001112346788899888776666 5665543 2222221111100 00112346777777777777765 56
Q ss_pred CcEEEEe
Q 024451 253 TNLKIWA 259 (267)
Q Consensus 253 g~i~~w~ 259 (267)
|.|.-|+
T Consensus 323 G~il~~~ 329 (334)
T PRK13684 323 GVLLRYV 329 (334)
T ss_pred ceEEEec
Confidence 8887775
No 482
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=47.95 E-value=1.5e+02 Score=24.15 Aligned_cols=144 Identities=17% Similarity=0.104 Sum_probs=80.1
Q ss_pred eeEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCcccceE--Eeecc
Q 024451 60 THLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVASRAVR--TFHGH 137 (267)
Q Consensus 60 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~~~~~~--~~~~~ 137 (267)
+++..+.++.=++|.|+.+......+. .... ..--..+.++ ++..-.+..|.-+-+.|+.....+.- .+...
T Consensus 97 ~yvyvad~ssGL~IvDIS~P~sP~~~~-~lnt--~gyaygv~vs---Gn~aYVadlddgfLivdvsdpssP~lagrya~~ 170 (370)
T COG5276 97 EYVYVADWSSGLRIVDISTPDSPTLIG-FLNT--DGYAYGVYVS---GNYAYVADLDDGFLIVDVSDPSSPQLAGRYALP 170 (370)
T ss_pred cEEEEEcCCCceEEEeccCCCCcceec-cccC--CceEEEEEec---CCEEEEeeccCcEEEEECCCCCCceeeeeeccC
Confidence 577778888889999998765433322 1111 1222334443 23433444444555778765554432 22223
Q ss_pred ccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCc
Q 024451 138 EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL 216 (267)
Q Consensus 138 ~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~ 216 (267)
....+.++.+ |++-..+..|+-+.+-|+........ .... +..+.+.++..+++.-+++... .-+.+-|...
T Consensus 171 ~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvl-i~~~--n~g~g~~sv~vsdnr~y~vvy~--egvlivd~s~ 242 (370)
T COG5276 171 GGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVL-IGSY--NTGPGTYSVSVSDNRAYLVVYD--EGVLIVDVSG 242 (370)
T ss_pred CCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeE-EEEE--ecCCceEEEEecCCeeEEEEcc--cceEEEecCC
Confidence 3334566665 67777788999999999977554332 2222 1223577777777665655543 2244555433
No 483
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=47.70 E-value=1.6e+02 Score=24.27 Aligned_cols=12 Identities=17% Similarity=0.299 Sum_probs=8.5
Q ss_pred CeEEEEeCCCCe
Q 024451 69 QTCVLWDITTGL 80 (267)
Q Consensus 69 ~~v~iwd~~~~~ 80 (267)
+.+.+||..+..
T Consensus 168 ~~v~~YDp~t~~ 179 (346)
T TIGR03547 168 KNVLSYDPSTNQ 179 (346)
T ss_pred ceEEEEECCCCc
Confidence 467888887654
No 484
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=45.58 E-value=1.6e+02 Score=23.74 Aligned_cols=95 Identities=16% Similarity=0.280 Sum_probs=50.9
Q ss_pred eEEEeecCCCCCCCCCCcccccccCCeeeEEEEEEecCCCeeEEEee------CCCeEEEEeCCCCeeEEEeCCccccCC
Q 024451 20 VCSIFNLNSPTDKDGNLPVSRMLSGHKGYVSCCQYVPDEDTHLITSS------GDQTCVLWDITTGLRTSVFGGEFQSGH 93 (267)
Q Consensus 20 ~v~~w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~------~d~~v~iwd~~~~~~~~~~~~~~~~~~ 93 (267)
.|++||..... -.+.-.+-.+.|+.+.|..+ .++++.|. ....+..||..++.-.. +.......-
T Consensus 17 ~lC~yd~~~~q-------W~~~g~~i~G~V~~l~~~~~-~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~-~~~~~s~~i 87 (281)
T PF12768_consen 17 GLCLYDTDNSQ-------WSSPGNGISGTVTDLQWASN-NQLLVGGNFTLNGTNSSNLATYDFKNQTWSS-LGGGSSNSI 87 (281)
T ss_pred EEEEEECCCCE-------eecCCCCceEEEEEEEEecC-CEEEEEEeeEECCCCceeEEEEecCCCeeee-cCCcccccC
Confidence 58999976421 11222235688999999853 45666664 34568899988764322 221110112
Q ss_pred ccceEEEEEeCCC-CeEEEEec-C--CCeEEEEe
Q 024451 94 TADVLSVSISGSN-SRMFVSGS-C--DSTARLWD 123 (267)
Q Consensus 94 ~~~i~~~~~~~~~-~~~~~s~~-~--d~~i~iwd 123 (267)
..++..+.+...+ .++++.|. . +..|..||
T Consensus 88 pgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~d 121 (281)
T PF12768_consen 88 PGPVTALTFISNDGSNFWVAGRSANGSTFLMKYD 121 (281)
T ss_pred CCcEEEEEeeccCCceEEEeceecCCCceEEEEc
Confidence 3456666654333 34444443 2 23466665
No 485
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=45.23 E-value=98 Score=28.98 Aligned_cols=72 Identities=17% Similarity=0.011 Sum_probs=47.6
Q ss_pred cceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEE-EeecCC-------------CCCCcEEEEEEccCCCEEEEEE
Q 024451 139 GDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVY-YQQHGE-------------NEIPHVTSIAFSISGRLLFAGY 204 (267)
Q Consensus 139 ~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~-------------~~~~~v~~~~~s~~~~~l~~g~ 204 (267)
+.|.++....-+.+++....||+|.++|-.+-+.+... ...... .....+..++|||++..++.-.
T Consensus 260 ~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~ 339 (753)
T PF11635_consen 260 KRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQID 339 (753)
T ss_pred CeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEe
Confidence 34666776666778899999999999998775443322 000000 0011234588999999999888
Q ss_pred eCCeEE
Q 024451 205 SNGDCY 210 (267)
Q Consensus 205 ~dg~i~ 210 (267)
.+|.+.
T Consensus 340 ~~~~~~ 345 (753)
T PF11635_consen 340 EDGKTK 345 (753)
T ss_pred cCCCce
Confidence 888855
No 486
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=44.07 E-value=8.4 Score=17.76 Aligned_cols=8 Identities=50% Similarity=0.974 Sum_probs=6.0
Q ss_pred eeCCCCCe
Q 024451 4 AFSPTGQS 11 (267)
Q Consensus 4 ~~~~~g~~ 11 (267)
-|||+|++
T Consensus 7 ~FSp~Grl 14 (23)
T PF10584_consen 7 TFSPDGRL 14 (23)
T ss_dssp SBBTTSSB
T ss_pred eECCCCeE
Confidence 38888875
No 487
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=43.31 E-value=2.3e+02 Score=26.69 Aligned_cols=148 Identities=13% Similarity=0.067 Sum_probs=73.0
Q ss_pred eEEEeeCCCeEEEEeCCCCeeEEEeCCccccCCccceEEEEEeCCCCeEEEEecCCCeEEEEeCCCc----ccceEEeec
Q 024451 61 HLITSSGDQTCVLWDITTGLRTSVFGGEFQSGHTADVLSVSISGSNSRMFVSGSCDSTARLWDTRVA----SRAVRTFHG 136 (267)
Q Consensus 61 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~d~~i~iwd~~~~----~~~~~~~~~ 136 (267)
.+..|+.++.+-|+.-.++.......-...+ -...+.++.+++. -+..|..||++-.+--... ..+...+..
T Consensus 549 Tic~gtq~ssisissss~~s~ke~~~~~~sp-e~~~v~~l~~ss~---Slgagl~dgt~a~y~rap~gSwd~ep~~~~~~ 624 (925)
T KOG3522|consen 549 TICLGTQTSSISISSSSLDSIKEVTSEPPSP-EHESVKLLLFSSG---SLGAGLIDGTLAVYGRAPSGSWDGEPNISIPT 624 (925)
T ss_pred cccccCccceeEEeeccCCcccceeccCCCC-chhhhhhhhcccc---ccccCccCCccccccCCCCCCCCCCCcccccc
Confidence 4677888999999876533222111111111 2233444444321 2334555665554421100 001112222
Q ss_pred cccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCc
Q 024451 137 HEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL 216 (267)
Q Consensus 137 ~~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~ 216 (267)
-..+|.+.++..+ ++-++.||.|.++...+......... + ..+...|+++...-++-+++-.+.+ .+++++.++
T Consensus 625 g~lPvrsla~~ed---~~was~gG~V~vi~~tt~~~~~~lea-h-qee~~~Vthm~~~~~gVwvafasG~-~~rlfhtet 698 (925)
T KOG3522|consen 625 GSLPVRSLAFQED---FVWASEGGCVHVIPSTTFIRSWDLEA-H-QEEAHSVTHMLYLDNGVWVAFASGD-EERLFHTET 698 (925)
T ss_pred CCccccchhhhhc---eeeeecCCceEEEechhccccchhHH-H-HhhcceEEEEEeeCCceEEEEcCCC-EEEEecccc
Confidence 2356777776544 66678899999998765432211110 1 1122357888777666666655433 344456544
Q ss_pred cc
Q 024451 217 AK 218 (267)
Q Consensus 217 ~~ 218 (267)
..
T Consensus 699 l~ 700 (925)
T KOG3522|consen 699 LW 700 (925)
T ss_pred cC
Confidence 43
No 488
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=42.36 E-value=1.6e+02 Score=23.34 Aligned_cols=58 Identities=17% Similarity=0.181 Sum_probs=32.8
Q ss_pred CEEEEEEeCCeEEEEeCCccceeeecccccCCccceE-EEEEEC-CCCCeEEEeECCCcEEEE
Q 024451 198 RLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRI-TCLGLS-ADGSALCTGSWDTNLKIW 258 (267)
Q Consensus 198 ~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v-~~~~~~-p~~~~l~sgs~dg~i~~w 258 (267)
..|+.|.++|.|+|.|.+......++. ++ .-...| ..-.|. -|.+ ++.+++||.|.+-
T Consensus 196 scLViGTE~~~i~iLd~~af~il~~~~-lp-svPv~i~~~G~~devdyR-I~Va~Rdg~iy~i 255 (257)
T PF14779_consen 196 SCLVIGTESGEIYILDPQAFTILKQVQ-LP-SVPVFISVSGQYDEVDYR-IVVACRDGKIYTI 255 (257)
T ss_pred ceEEEEecCCeEEEECchhheeEEEEe-cC-CCceEEEEEeeeeccceE-EEEEeCCCEEEEE
Confidence 489999999999999987665544331 11 011111 111222 2333 4456788887653
No 489
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=42.08 E-value=3.6e+02 Score=26.80 Aligned_cols=112 Identities=13% Similarity=0.122 Sum_probs=57.5
Q ss_pred ccceeEEEEecCCCEEEEeeCCCcEEEEeCCC-CeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCc
Q 024451 138 EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT-GHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL 216 (267)
Q Consensus 138 ~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~ 216 (267)
.++|..++= =+|. |+++ ..-+|.+|+++. ...+..-+- . .++.-.....-.++|+.|.--..|.+.-.+.
T Consensus 1097 KGtVsavce-V~G~-l~~~-~GqKI~v~~l~r~~~ligVaFi---D---~~~yv~s~~~vknlIl~gDV~ksisfl~fqe 1167 (1366)
T KOG1896|consen 1097 KGTVSAVCE-VRGH-LLSS-QGQKIIVRKLDRDSELIGVAFI---D---LPLYVHSMKVVKNLILAGDVMKSISFLGFQE 1167 (1366)
T ss_pred ccceEEEEE-eccE-EEEc-cCcEEEEEEeccCCcceeeEEe---c---cceeEEehhhhhhheehhhhhhceEEEEEcc
Confidence 345554442 2344 4443 334899999943 333222221 0 1122222333456777776655565544322
Q ss_pred -cceeeecccccCCccceEEEEEECCCCC--eEEEeECCCcEEEEec
Q 024451 217 -AKVVLNLGSLQNSHEGRITCLGLSADGS--ALCTGSWDTNLKIWAF 260 (267)
Q Consensus 217 -~~~~~~~~~~~~~~~~~v~~~~~~p~~~--~l~sgs~dg~i~~w~~ 260 (267)
......+.+.. -.-.+.++.|--||. +++++..|+.|.+|.+
T Consensus 1168 ep~rlsL~srd~--~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y 1212 (1366)
T KOG1896|consen 1168 EPYRLSLLSRDF--EPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMY 1212 (1366)
T ss_pred CceEEEEeecCC--chhhceeeeeEEcCCeeEEEEEcCCCcEEEEEe
Confidence 11111111111 122467788876665 5788899999999976
No 490
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=42.01 E-value=2.1e+02 Score=24.11 Aligned_cols=51 Identities=24% Similarity=0.268 Sum_probs=28.4
Q ss_pred EEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeEC--CCcEEEE
Q 024451 203 GYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSW--DTNLKIW 258 (267)
Q Consensus 203 g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~--dg~i~~w 258 (267)
+..+|.+.-||..+.....-+..+ .--+.++.|||+.+++.+-. -+.-|.|
T Consensus 195 g~~~GRl~~YD~~tK~~~VLld~L-----~F~NGlaLS~d~sfvl~~Et~~~ri~ryw 247 (376)
T KOG1520|consen 195 GDPTGRLFRYDPSTKVTKVLLDGL-----YFPNGLALSPDGSFVLVAETTTARIKRYW 247 (376)
T ss_pred CCCccceEEecCcccchhhhhhcc-----cccccccCCCCCCEEEEEeeccceeeeeE
Confidence 334677777876543321111111 12467899999999876532 3334566
No 491
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=40.14 E-value=2.1e+02 Score=23.52 Aligned_cols=120 Identities=20% Similarity=0.299 Sum_probs=64.2
Q ss_pred ceeEEEEecCCCEEEEeeCC------CcEEEEeCCCCeeeEEEEeec----------CCCCCCcEEEEEEccCCCEEEEE
Q 024451 140 DVNTVKFFPDGNRFGTGSDD------GTCRLFDIRTGHQLQVYYQQH----------GENEIPHVTSIAFSISGRLLFAG 203 (267)
Q Consensus 140 ~i~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~----------~~~~~~~v~~~~~s~~~~~l~~g 203 (267)
...++++.+++.++++.=.+ -.|..++.. ++....+.-.. ........-+++++|+|+.|++.
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~ 164 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA 164 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence 34578886777777655445 578888865 55433331111 01122357899999999966665
Q ss_pred Ee-----CC--e-------EEE--EeCCc-cceeeecccccCC-----ccceEEEEEECCCCCeEEE-eE----CCCcEE
Q 024451 204 YS-----NG--D-------CYV--WDTLL-AKVVLNLGSLQNS-----HEGRITCLGLSADGSALCT-GS----WDTNLK 256 (267)
Q Consensus 204 ~~-----dg--~-------i~i--~d~~~-~~~~~~~~~~~~~-----~~~~v~~~~~~p~~~~l~s-gs----~dg~i~ 256 (267)
.+ |+ . +++ ||... .+....+...... ....+..+.+-|++++|+. -+ ....++
T Consensus 165 ~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~r 244 (326)
T PF13449_consen 165 MESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKR 244 (326)
T ss_pred ECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEE
Confidence 43 22 1 444 45433 2122221111111 3346777888888887764 11 234566
Q ss_pred EEec
Q 024451 257 IWAF 260 (267)
Q Consensus 257 ~w~~ 260 (267)
|+.+
T Consensus 245 i~~v 248 (326)
T PF13449_consen 245 IYRV 248 (326)
T ss_pred EEEE
Confidence 6643
No 492
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.83 E-value=3.2e+02 Score=25.53 Aligned_cols=35 Identities=11% Similarity=0.187 Sum_probs=28.4
Q ss_pred ccceeEEEEecCCCEEEEeeCCCcEEEEeCCCCee
Q 024451 138 EGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQ 172 (267)
Q Consensus 138 ~~~i~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 172 (267)
.+.+..+..+|+.++++--..+|.|.+-+.+..+.
T Consensus 216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~ 250 (829)
T KOG2280|consen 216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQI 250 (829)
T ss_pred CceEEEEEEcCCcceEEEEecCCcEEEEecchhhh
Confidence 35677889999999999889999999988765443
No 493
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=38.50 E-value=2.1e+02 Score=23.07 Aligned_cols=64 Identities=17% Similarity=0.180 Sum_probs=37.9
Q ss_pred cEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccC--CccceEEEEEECC--CCCeEEEeE
Q 024451 187 HVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQN--SHEGRITCLGLSA--DGSALCTGS 250 (267)
Q Consensus 187 ~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~~v~~~~~~p--~~~~l~sgs 250 (267)
....++++++|..+++--+.+.|..|+........++..+.. ..-.....+++.+ +|.+.+...
T Consensus 187 ~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 187 QSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSN 254 (287)
T ss_dssp SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-
T ss_pred CCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEEC
Confidence 345677889898888888999999999765221111111111 1123567888888 776666543
No 494
>PRK13684 Ycf48-like protein; Provisional
Probab=38.02 E-value=2.3e+02 Score=23.39 Aligned_cols=111 Identities=17% Similarity=0.144 Sum_probs=58.0
Q ss_pred ccceeEEEEecCCCEEEEeeCCCcEE-EEeCCCCeeeEEEEeecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCc
Q 024451 138 EGDVNTVKFFPDGNRFGTGSDDGTCR-LFDIRTGHQLQVYYQQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLL 216 (267)
Q Consensus 138 ~~~i~~~~~~~~~~~l~~~~~d~~i~-iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~ 216 (267)
.+.+..+.+.|++.+++++. .|.+. .+|- .++.-.. ........+.++.+.++++.+++| ..|.+++=....
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~-gg~tW~~----~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~ 244 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEP-GQTAWTP----HQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDD 244 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcCC-CCCeEEE----eeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCC
Confidence 45678899999877665544 44433 2221 1111111 111223457888999999887776 457664322222
Q ss_pred cceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEE
Q 024451 217 AKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLK 256 (267)
Q Consensus 217 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~ 256 (267)
++.-.........-...+..+.+.|++..++.| .+|.+.
T Consensus 245 G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~ 283 (334)
T PRK13684 245 LESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL 283 (334)
T ss_pred CCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE
Confidence 211110000000012347888999988876655 566544
No 495
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=37.68 E-value=15 Score=32.96 Aligned_cols=80 Identities=20% Similarity=0.218 Sum_probs=47.7
Q ss_pred ccceEEeeccccceeEEEEecCCCEEEEeeCC-CcEEEEeCCCCeeeEE-EEe----ecCCCCCCcEEEEEEccCCCEEE
Q 024451 128 SRAVRTFHGHEGDVNTVKFFPDGNRFGTGSDD-GTCRLFDIRTGHQLQV-YYQ----QHGENEIPHVTSIAFSISGRLLF 201 (267)
Q Consensus 128 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-~~i~iwd~~~~~~~~~-~~~----~~~~~~~~~v~~~~~s~~~~~l~ 201 (267)
...++++++|..++..+.|.+.+..+++++-. ..|.++.+-..-+... -.+ .+..+....+..+||+...++++
T Consensus 305 ~a~i~QfkAhkspiSaLcfdqsgsllViasi~g~nVnvfRimet~~t~~~~~qs~~~s~ra~t~aviqdicfs~~s~~r~ 384 (788)
T KOG2109|consen 305 FADIRQFKAHKSPISALCFDQSGSLLVIASITGRNVNVFRIMETVCTVNVSDQSLVVSPRANTAAVIQDICFSEVSTIRT 384 (788)
T ss_pred hhhhhheeeecCcccccccccCceEEEEEeeccceeeeEEeccccccccccccccccchhcchHHHHHHHhhhhhcceEe
Confidence 34577889999999999999999999888754 4566665432111000 000 00111112234567777777777
Q ss_pred EEEeCC
Q 024451 202 AGYSNG 207 (267)
Q Consensus 202 ~g~~dg 207 (267)
.|+.+|
T Consensus 385 ~gsc~G 390 (788)
T KOG2109|consen 385 AGSCEG 390 (788)
T ss_pred ecccCC
Confidence 776655
No 496
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=37.57 E-value=1.5e+02 Score=27.86 Aligned_cols=136 Identities=17% Similarity=0.144 Sum_probs=70.2
Q ss_pred EEEEecCCCeEEEEeCCCcccceEE---eeccccceeEEEEecCCCEEEEeeCCCcEEE--------EeCCCCeeeEEEE
Q 024451 109 MFVSGSCDSTARLWDTRVASRAVRT---FHGHEGDVNTVKFFPDGNRFGTGSDDGTCRL--------FDIRTGHQLQVYY 177 (267)
Q Consensus 109 ~~~s~~~d~~i~iwd~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i--------wd~~~~~~~~~~~ 177 (267)
.+..++.++.+.++.-......... .......+.++.+++. -+..|..||++-. ||......+
T Consensus 549 Tic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~--Slgagl~dgt~a~y~rap~gSwd~ep~~~~---- 622 (925)
T KOG3522|consen 549 TICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSG--SLGAGLIDGTLAVYGRAPSGSWDGEPNISI---- 622 (925)
T ss_pred cccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhcccc--ccccCccCCccccccCCCCCCCCCCCcccc----
Confidence 3566788888888865422221111 1111234555555432 2333444444433 554421111
Q ss_pred eecCCCCCCcEEEEEEccCCCEEEEEEeCCeEEEEeCCccceeeecccccCCccceEEEEEECCCCCeEEEeECCCcEEE
Q 024451 178 QQHGENEIPHVTSIAFSISGRLLFAGYSNGDCYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSADGSALCTGSWDTNLKI 257 (267)
Q Consensus 178 ~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~sgs~dg~i~~ 257 (267)
.....++.+..|..+ ++.++.+|.+.++...+........ ....|...|+++...-+|=+++-.+.| .+++
T Consensus 623 ----~~g~lPvrsla~~ed---~~was~gG~V~vi~~tt~~~~~~le-ahqee~~~Vthm~~~~~gVwvafasG~-~~rl 693 (925)
T KOG3522|consen 623 ----PTGSLPVRSLAFQED---FVWASEGGCVHVIPSTTFIRSWDLE-AHQEEAHSVTHMLYLDNGVWVAFASGD-EERL 693 (925)
T ss_pred ----ccCCccccchhhhhc---eeeeecCCceEEEechhccccchhH-HHHhhcceEEEEEeeCCceEEEEcCCC-EEEE
Confidence 111234566655433 5667789999999876544332221 123455678888888777666655433 4555
Q ss_pred Ee
Q 024451 258 WA 259 (267)
Q Consensus 258 w~ 259 (267)
+.
T Consensus 694 fh 695 (925)
T KOG3522|consen 694 FH 695 (925)
T ss_pred ec
Confidence 54
No 497
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=35.31 E-value=2.2e+02 Score=22.39 Aligned_cols=135 Identities=19% Similarity=0.216 Sum_probs=63.4
Q ss_pred EEEeCCCcccceEEeec-cccceeEEEEecCCCEEEEeeC-C--CcEEEEeCCCCeeeEEEEeecC-CCCCCcEEEEEEc
Q 024451 120 RLWDTRVASRAVRTFHG-HEGDVNTVKFFPDGNRFGTGSD-D--GTCRLFDIRTGHQLQVYYQQHG-ENEIPHVTSIAFS 194 (267)
Q Consensus 120 ~iwd~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~-d--~~i~iwd~~~~~~~~~~~~~~~-~~~~~~v~~~~~s 194 (267)
.+||+... ..+.+.. ...-+.+-.+.++|+.+.+|+. | ..+++++...........+... .....+=.+...=
T Consensus 49 ~~yD~~tn--~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L 126 (243)
T PF07250_consen 49 VEYDPNTN--TFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTL 126 (243)
T ss_pred EEEecCCC--cEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceEC
Confidence 36776532 2333322 2223445567789999999874 3 4588888654000000111000 0011111233344
Q ss_pred cCCCEEEEEEeCC-eEEEEeCCcc-ceeeecccccC---CccceE-EEEEECCCCCeEEEeECCCcEE
Q 024451 195 ISGRLLFAGYSNG-DCYVWDTLLA-KVVLNLGSLQN---SHEGRI-TCLGLSADGSALCTGSWDTNLK 256 (267)
Q Consensus 195 ~~~~~l~~g~~dg-~i~i~d~~~~-~~~~~~~~~~~---~~~~~v-~~~~~~p~~~~l~sgs~dg~i~ 256 (267)
+||+.|+.|+.+. ...+|+.... .....+..+.. ...... --+-..|+|++++.+..+..|.
T Consensus 127 ~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~i~ 194 (243)
T PF07250_consen 127 PDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSIIY 194 (243)
T ss_pred CCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcEEE
Confidence 7899999988764 3444543211 11111110100 001111 1244569999999887654433
No 498
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=35.17 E-value=2.2e+02 Score=22.38 Aligned_cols=24 Identities=29% Similarity=0.540 Sum_probs=17.9
Q ss_pred eCCCCCeEEEccC---CCeEEEeecCC
Q 024451 5 FSPTGQSVACGGL---DSVCSIFNLNS 28 (267)
Q Consensus 5 ~~~~g~~l~~~~~---d~~v~~w~~~~ 28 (267)
|.+||++|.+||. ...+++++...
T Consensus 74 ~L~dG~ll~tGG~~~G~~~ir~~~p~~ 100 (243)
T PF07250_consen 74 FLPDGRLLQTGGDNDGNKAIRIFTPCT 100 (243)
T ss_pred CCCCCCEEEeCCCCccccceEEEecCC
Confidence 6789999999886 34577887543
No 499
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.77 E-value=4.7e+02 Score=25.68 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=21.4
Q ss_pred CCCCCeEEEeECCCcEEEEecCc
Q 024451 240 SADGSALCTGSWDTNLKIWAFGG 262 (267)
Q Consensus 240 ~p~~~~l~sgs~dg~i~~w~~~~ 262 (267)
++++..++++-.||.+..|++++
T Consensus 243 ~~~~~~~v~~h~Dgs~~fWd~s~ 265 (993)
T KOG1983|consen 243 SRDGSHFVSYHTDGSYAFWDVSS 265 (993)
T ss_pred ccCCceEEEEEecCCEEeeecCC
Confidence 78899999999999999999876
No 500
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=33.28 E-value=4.2e+02 Score=25.00 Aligned_cols=117 Identities=15% Similarity=0.124 Sum_probs=68.9
Q ss_pred ceeEEEEec-CCCEEEEeeCCCcEEEEeCCCCeee--EEE--E-eec-----CCCCCCcEEEEEEccCCCEEEEEEeCCe
Q 024451 140 DVNTVKFFP-DGNRFGTGSDDGTCRLFDIRTGHQL--QVY--Y-QQH-----GENEIPHVTSIAFSISGRLLFAGYSNGD 208 (267)
Q Consensus 140 ~i~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~--~~~--~-~~~-----~~~~~~~v~~~~~s~~~~~l~~g~~dg~ 208 (267)
+...++|+| +.+.||.....|...|||+...... ..+ . ... ...+...-..+.|.++...|++. +...
T Consensus 147 ~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~-~r~~ 225 (765)
T PF10214_consen 147 PHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVC-NRSK 225 (765)
T ss_pred ccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEE-cCCc
Confidence 456799998 4678999999999999999211110 000 0 000 01112234578898887777776 4567
Q ss_pred EEEEeCCccceeeecccccCCccceEEEEEECCC--CCeEEEeECCCcEEEEecC
Q 024451 209 CYVWDTLLAKVVLNLGSLQNSHEGRITCLGLSAD--GSALCTGSWDTNLKIWAFG 261 (267)
Q Consensus 209 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~l~sgs~dg~i~~w~~~ 261 (267)
+.++|+........+ ........|..+.-+|. +..++..+ ..|.+.+..
T Consensus 226 l~~~d~~~~~~~~~l--~~~~~~~~IlDv~~~~~~~~~~FiLTs--~eiiw~~~~ 276 (765)
T PF10214_consen 226 LMLIDFESNWQTEYL--VTAKTWSWILDVKRSPDNPSHVFILTS--KEIIWLDVK 276 (765)
T ss_pred eEEEECCCCCccchh--ccCCChhheeeEEecCCccceEEEEec--CeEEEEEcc
Confidence 889998766542211 11234456888888876 44444433 445544543
Done!